BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (231 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AA45 Ribosomal small subunit pseudouridine synthase A... 479 e-134 UniRef50_Q8ZGM2 Ribosomal small subunit pseudouridine synthase A... 402 e-111 UniRef50_Q2NSN0 Pseudouridine synthase n=7 Tax=Gammaproteobacter... 346 4e-94 UniRef50_Q1YVK2 Pseudouridine synthase n=3 Tax=Gammaproteobacter... 222 9e-57 UniRef50_Q21JF0 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 213 3e-54 UniRef50_C5BI29 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 208 1e-52 UniRef50_A1U6Q2 Pseudouridine synthase n=4 Tax=Gammaproteobacter... 207 3e-52 UniRef50_B7VP37 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 204 2e-51 UniRef50_Q9I5J6 Ribosomal small subunit pseudouridine synthase A... 197 2e-49 UniRef50_A6D701 Pseudouridine synthase (Fragment) n=2 Tax=Vibrio... 194 2e-48 UniRef50_B1KQS3 Pseudouridine synthase n=20 Tax=Gammaproteobacte... 191 2e-47 UniRef50_B9MRL6 Pseudouridine synthase n=2 Tax=Clostridia RepID=... 189 5e-47 UniRef50_A6DMJ6 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 189 6e-47 UniRef50_A3JEU2 Pseudouridine synthase n=2 Tax=Marinobacter RepI... 189 6e-47 UniRef50_C0FY58 Pseudouridine synthase n=3 Tax=Clostridiales Rep... 185 1e-45 UniRef50_UPI0001745920 putative pseudouridylate synthase n=1 Tax... 184 2e-45 UniRef50_Q4FVR0 Pseudouridine synthase n=4 Tax=Moraxellaceae Rep... 180 4e-44 UniRef50_B2V6W2 Pseudouridine synthase n=5 Tax=Bacteria RepID=B2... 178 1e-43 UniRef50_B8KTF1 Pseudouridine synthase n=1 Tax=gamma proteobacte... 174 2e-42 UniRef50_D1PIW4 Pseudouridine synthase n=1 Tax=Subdoligranulum v... 174 2e-42 UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium ... 174 3e-42 UniRef50_A5KLG0 Pseudouridine synthase n=8 Tax=Bacteria RepID=A5... 173 4e-42 UniRef50_B5JX71 Pseudouridine synthase n=1 Tax=gamma proteobacte... 172 1e-41 UniRef50_D1AL84 Pseudouridine synthase n=1 Tax=Sebaldella termit... 172 1e-41 UniRef50_A6WK95 Pseudouridine synthase n=12 Tax=Gammaproteobacte... 171 1e-41 UniRef50_Q2W4E4 Pseudouridine synthase n=20 Tax=cellular organis... 169 8e-41 UniRef50_Q0VQK2 Pseudouridine synthase n=2 Tax=Alcanivorax RepID... 168 1e-40 UniRef50_B0S303 Pseudouridine synthase n=2 Tax=Finegoldia magna ... 167 2e-40 UniRef50_Q21EB0 Pseudouridine synthase n=14 Tax=Gammaproteobacte... 167 2e-40 UniRef50_C7H4Z6 Pseudouridine synthase n=1 Tax=Faecalibacterium ... 167 2e-40 UniRef50_C8P302 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 166 4e-40 UniRef50_C0EB54 Pseudouridine synthase n=1 Tax=Clostridium methy... 166 6e-40 UniRef50_A9KNY1 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 163 5e-39 UniRef50_A2RP35 Pseudouridine synthase n=172 Tax=Firmicutes RepI... 163 5e-39 UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapol... 160 3e-38 UniRef50_A8SIK9 Pseudouridine synthase n=1 Tax=Parvimonas micra ... 160 3e-38 UniRef50_Q15Q67 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q1... 159 6e-38 UniRef50_O66829 Uncharacterized RNA pseudouridine synthase aq_55... 159 7e-38 UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae Re... 158 1e-37 UniRef50_C7REA2 Pseudouridine synthase n=4 Tax=Anaerococcus RepI... 156 6e-37 UniRef50_C5CED2 Pseudouridine synthase n=1 Tax=Kosmotoga olearia... 155 1e-36 UniRef50_A8SYF2 Pseudouridine synthase n=1 Tax=Coprococcus eutac... 155 1e-36 UniRef50_Q1LJQ9 Pseudouridine synthase n=3 Tax=Burkholderiales R... 154 2e-36 UniRef50_UPI0001C37AA4 16s pseudouridylate synthase n=2 Tax=Rumi... 154 3e-36 UniRef50_Q6F9V5 Pseudouridine synthase n=17 Tax=Acinetobacter Re... 154 3e-36 UniRef50_Q49YI4 Pseudouridine synthase n=2 Tax=Staphylococcus Re... 153 4e-36 UniRef50_Q6G8H4 Pseudouridine synthase n=61 Tax=Firmicutes RepID... 153 4e-36 UniRef50_C2KV26 Pseudouridylate synthase n=1 Tax=Oribacterium si... 153 4e-36 UniRef50_B7J5G3 Pseudouridine synthase n=3 Tax=Acidithiobacillus... 153 4e-36 UniRef50_B8ET33 Pseudouridine synthase n=29 Tax=Proteobacteria R... 152 9e-36 UniRef50_B2TQQ1 Pseudouridine synthase n=8 Tax=Clostridium RepID... 151 2e-35 UniRef50_A4J9G8 Pseudouridine synthase n=47 Tax=Bacteria RepID=A... 150 2e-35 UniRef50_A0Z9D8 Pseudouridine synthase, Rsu n=1 Tax=marine gamma... 150 3e-35 UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=... 150 3e-35 UniRef50_D2MQD6 Pseudouridylate synthase n=1 Tax=Bulleidia extru... 150 4e-35 UniRef50_Q042N1 Pseudouridine synthase n=3 Tax=Lactobacillus gas... 150 4e-35 UniRef50_C7NBL1 Pseudouridine synthase n=3 Tax=Leptotrichia RepI... 149 8e-35 UniRef50_C5WHE9 Pseudouridine synthase n=3 Tax=Lactobacillales R... 149 1e-34 UniRef50_Q6LQS3 Pseudouridine synthase n=1 Tax=Photobacterium pr... 149 1e-34 UniRef50_Q1J642 Pseudouridine synthase n=51 Tax=Streptococcus Re... 148 1e-34 UniRef50_C4FUC8 Pseudouridine synthase n=1 Tax=Catonella morbi A... 147 3e-34 UniRef50_A5TW76 Pseudouridine synthase n=11 Tax=Fusobacterium Re... 146 5e-34 UniRef50_Q0F0K3 Pseudouridine synthase n=1 Tax=Mariprofundus fer... 145 8e-34 UniRef50_C4Z9Y4 Pseudouridine synthase n=16 Tax=Bacteria RepID=C... 145 9e-34 UniRef50_A7VSS7 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 145 9e-34 UniRef50_B2UKZ1 Pseudouridine synthase n=1 Tax=Akkermansia mucin... 145 9e-34 UniRef50_Q73PD9 Pseudouridine synthase n=1 Tax=Treponema dentico... 145 1e-33 UniRef50_A7HJ83 RNA-binding S4 domain protein n=3 Tax=Thermotoga... 145 1e-33 UniRef50_D0SE82 Pseudouridine synthase n=1 Tax=Acinetobacter joh... 145 1e-33 UniRef50_A5Z4I7 Pseudouridine synthase n=1 Tax=Eubacterium ventr... 144 2e-33 UniRef50_C8PTK2 Pseudouridine synthase n=1 Tax=Treponema vincent... 144 2e-33 UniRef50_C7HRX2 Ribosomal small subunit pseudouridine synthase A... 144 2e-33 UniRef50_C9LMF3 Ribosomal small subunit pseudouridine synthase A... 144 2e-33 UniRef50_Q30NZ7 Pseudouridine synthase n=3 Tax=Campylobacterales... 144 2e-33 UniRef50_A6LLC7 RNA-binding S4 domain protein n=1 Tax=Thermosiph... 144 2e-33 UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 144 2e-33 UniRef50_UPI0001698CBA hypothetical protein Epers_16024 n=1 Tax=... 144 3e-33 UniRef50_O32068 Uncharacterized RNA pseudouridine synthase ytzG ... 143 4e-33 UniRef50_Q38VQ0 Pseudouridine synthase n=6 Tax=Lactobacillus Rep... 143 5e-33 UniRef50_UPI0001BC42E2 ribosomal small subunit pseudouridine syn... 142 7e-33 UniRef50_B9XS61 Pseudouridine synthase n=1 Tax=bacterium Ellin51... 142 7e-33 UniRef50_D0BMY5 Pseudouridine synthase n=1 Tax=Granulicatella el... 142 9e-33 UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q2... 142 1e-32 UniRef50_C6XLQ6 Pseudouridine synthase n=1 Tax=Hirschia baltica ... 142 1e-32 UniRef50_C1D9V0 Pseudouridine synthase n=1 Tax=Laribacter hongko... 141 2e-32 UniRef50_Q4A5Z2 Pseudouridine synthase n=2 Tax=Mycoplasma synovi... 140 3e-32 UniRef50_Q5SLZ5 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q5... 139 7e-32 UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum ter... 138 2e-31 UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B... 138 2e-31 UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadale... 138 2e-31 UniRef50_C1XNC4 Pseudouridine synthase n=1 Tax=Meiothermus ruber... 136 4e-31 UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0... 136 5e-31 UniRef50_C9KIR7 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 136 6e-31 UniRef50_B0N857 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0... 136 6e-31 UniRef50_Q47QM5 Pseudouridine synthase n=3 Tax=Actinomycetales R... 135 8e-31 UniRef50_A9BZ50 Pseudouridine synthase n=49 Tax=Betaproteobacter... 135 8e-31 UniRef50_A3CLN2 Pseudouridine synthase n=59 Tax=Lactobacillales ... 134 2e-30 UniRef50_B7A9J5 Pseudouridine synthase n=1 Tax=Thermus aquaticus... 134 3e-30 UniRef50_D1BMI6 Pseudouridine synthase n=3 Tax=Veillonella RepID... 134 3e-30 UniRef50_C0ACE6 Pseudouridine synthase n=1 Tax=Opitutaceae bacte... 132 6e-30 UniRef50_Q5WE78 Pseudouridine synthase n=10 Tax=Firmicutes RepID... 132 7e-30 UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3... 132 7e-30 UniRef50_Q54RS0 Putative uncharacterized protein n=1 Tax=Dictyos... 132 8e-30 UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales ... 132 1e-29 UniRef50_A1TM39 Pseudouridine synthase n=3 Tax=Comamonadaceae Re... 131 1e-29 UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyr... 131 1e-29 UniRef50_Q73PC4 Pseudouridine synthase n=1 Tax=Treponema dentico... 131 2e-29 UniRef50_Q04F57 Pseudouridine synthase n=2 Tax=Oenococcus oeni R... 131 2e-29 UniRef50_C5WHS2 Pseudouridine synthase n=41 Tax=Firmicutes RepID... 130 3e-29 UniRef50_Q13UY7 Pseudouridine synthase n=45 Tax=root RepID=Q13UY... 130 3e-29 UniRef50_C7GZ55 Pseudouridine synthase n=1 Tax=Eubacterium saphe... 130 4e-29 UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_14... 130 4e-29 UniRef50_A8U4V7 Pseudouridine synthase n=10 Tax=Lactobacillales ... 129 5e-29 UniRef50_B0SBU8 Pseudouridine synthase n=2 Tax=Leptospira biflex... 129 6e-29 UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vaden... 128 1e-28 UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=... 127 2e-28 UniRef50_C6VP86 Pseudouridine synthase n=4 Tax=Lactobacillaceae ... 127 3e-28 UniRef50_B1C6T1 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 127 4e-28 UniRef50_A4S9F7 Predicted protein n=3 Tax=cellular organisms Rep... 127 4e-28 UniRef50_Q01Z61 Pseudouridine synthase n=1 Tax=Candidatus Soliba... 126 5e-28 UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae... 126 7e-28 UniRef50_C9RMP5 Pseudouridine synthase n=1 Tax=Fibrobacter succi... 126 7e-28 UniRef50_UPI000196C3BC hypothetical protein CATMIT_02354 n=1 Tax... 125 8e-28 UniRef50_Q2LSY4 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 125 9e-28 UniRef50_A1KUC7 Pseudouridine synthase n=29 Tax=Neisseriaceae Re... 125 1e-27 UniRef50_Q03AT5 Pseudouridine synthase n=8 Tax=Lactobacillus Rep... 125 1e-27 UniRef50_B5YJH7 Pseudouridine synthase n=1 Tax=Thermodesulfovibr... 125 2e-27 UniRef50_UPI0001693918 pseudouridylate synthase n=1 Tax=Paenibac... 124 2e-27 UniRef50_C0QWY7 Pseudouridine synthase n=2 Tax=Brachyspira RepID... 124 2e-27 UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 124 2e-27 UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wo... 124 3e-27 UniRef50_D0U645 Pseudouridine synthase n=1 Tax=uncultured actino... 124 3e-27 UniRef50_C7LZX4 Pseudouridine synthase n=1 Tax=Acidimicrobium fe... 124 4e-27 UniRef50_Q55578 Uncharacterized RNA pseudouridine synthase slr03... 123 4e-27 UniRef50_B1XJP9 Pseudouridine synthase n=3 Tax=Chroococcales Rep... 123 4e-27 UniRef50_B0SGV7 Pseudouridylate synthase n=2 Tax=Leptospira bifl... 123 5e-27 UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteracea... 122 8e-27 UniRef50_C8P160 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 122 1e-26 UniRef50_C8QZD4 Pseudouridine synthase n=1 Tax=Desulfurivibrio a... 122 1e-26 UniRef50_C8WGQ8 Pseudouridine synthase n=1 Tax=Eggerthella lenta... 121 2e-26 UniRef50_C5EVC9 Pseudouridine synthase n=6 Tax=Clostridiales Rep... 121 2e-26 UniRef50_A7HC79 Pseudouridine synthase n=1 Tax=Anaeromyxobacter ... 121 2e-26 UniRef50_A6GU42 Pseudouridine synthase n=1 Tax=Limnobacter sp. M... 121 2e-26 UniRef50_B4D966 Pseudouridine synthase n=1 Tax=Chthoniobacter fl... 120 2e-26 UniRef50_A5IYZ4 16S rRNA uridine 516 pseudouridylate synthaseand... 120 4e-26 UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus mari... 120 5e-26 UniRef50_B8G2X0 Pseudouridine synthase n=3 Tax=Bacteria RepID=B8... 119 6e-26 UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodi... 119 8e-26 UniRef50_UPI0001BCEF2E pseudouridine synthase n=1 Tax=Selenomona... 119 1e-25 UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae Rep... 119 1e-25 UniRef50_B9KY92 Pseudouridine synthase n=1 Tax=Thermomicrobium r... 119 1e-25 UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0... 118 1e-25 UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6... 118 2e-25 UniRef50_A5V220 Pseudouridine synthase n=5 Tax=Bacteria RepID=A5... 118 2e-25 UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytop... 118 2e-25 UniRef50_C4V2S0 Pseudouridine synthase n=1 Tax=Selenomonas flueg... 118 2e-25 UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter ferme... 117 2e-25 UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organism... 117 2e-25 UniRef50_A4J3M3 Pseudouridine synthase n=167 Tax=Bacteria RepID=... 117 3e-25 UniRef50_D1C7P2 Pseudouridine synthase n=1 Tax=Sphaerobacter the... 117 3e-25 UniRef50_A8SLU4 Pseudouridine synthase n=1 Tax=Parvimonas micra ... 117 3e-25 UniRef50_C1F236 Pseudouridine synthase n=8 Tax=Bacteria RepID=C1... 117 4e-25 UniRef50_C1MMY3 Predicted protein n=1 Tax=Micromonas pusilla CCM... 115 8e-25 UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B... 115 1e-24 UniRef50_A9SG51 Predicted protein n=3 Tax=Embryophyta RepID=A9SG... 115 1e-24 UniRef50_Q3AVD5 Pseudouridine synthase n=3 Tax=Cyanobacteria Rep... 115 1e-24 UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marin... 115 2e-24 UniRef50_C7NDY8 Pseudouridine synthase n=5 Tax=Fusobacteriaceae ... 114 2e-24 UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pine... 114 2e-24 UniRef50_B0VG32 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 114 2e-24 UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia ... 114 3e-24 UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q0... 114 3e-24 UniRef50_Q1D9N8 Pseudouridine synthase n=4 Tax=Cystobacterineae ... 114 3e-24 UniRef50_Q04T62 Pseudouridine synthase n=4 Tax=Leptospira RepID=... 114 3e-24 UniRef50_Q2SRP5 Ribosomal large subunit pseudouridine synthase B... 114 4e-24 UniRef50_C8WAL4 Pseudouridine synthase n=7 Tax=Coriobacteriaceae... 113 4e-24 UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 113 4e-24 UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax... 113 5e-24 UniRef50_B0S1L0 Pseudouridine synthase n=2 Tax=Finegoldia magna ... 113 5e-24 UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3... 113 5e-24 UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroid... 112 8e-24 UniRef50_Q1MQ05 Pseudouridine synthase n=1 Tax=Lawsonia intracel... 112 8e-24 UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium c... 112 1e-23 UniRef50_A1S9T3 Pseudouridine synthase n=1 Tax=Shewanella amazon... 112 1e-23 UniRef50_B6W7S5 Pseudouridine synthase n=2 Tax=Anaerococcus RepI... 112 1e-23 UniRef50_D1R854 Pseudouridine synthase n=4 Tax=Chlamydiales RepI... 111 2e-23 UniRef50_B3E104 Pseudouridine synthase n=1 Tax=Methylacidiphilum... 111 2e-23 UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium R... 111 2e-23 UniRef50_A6EPE0 Pseudouridine synthase n=1 Tax=unidentified euba... 110 3e-23 UniRef50_C8PSZ6 Ribosomal large subunit pseudouridine synthase B... 110 3e-23 UniRef50_Q3MC44 Pseudouridine synthase n=21 Tax=Cyanobacteria Re... 110 4e-23 UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1... 110 4e-23 UniRef50_D2VWU1 Predicted protein n=1 Tax=Naegleria gruberi RepI... 110 4e-23 UniRef50_Q1Q1Q0 Pseudouridine synthase n=1 Tax=Candidatus Kuenen... 110 4e-23 UniRef50_A0PYR9 Pseudouridine synthase n=9 Tax=Clostridium RepID... 109 7e-23 UniRef50_Q11U12 Pseudouridine synthase n=1 Tax=Cytophaga hutchin... 109 9e-23 UniRef50_O05668 Uncharacterized RNA pseudouridine synthase ML137... 109 9e-23 UniRef50_B0B8U9 Pseudouridine synthase n=10 Tax=Chlamydiales Rep... 109 9e-23 UniRef50_UPI00016C3D27 ribosomal large subunit pseudouridine syn... 109 9e-23 UniRef50_B3L0G1 Pseudouridine synthetase, putative n=1 Tax=Plasm... 109 9e-23 UniRef50_Q4AAG8 Pseudouridine synthase n=6 Tax=Mycoplasma RepID=... 109 1e-22 UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 108 1e-22 UniRef50_B3PMD0 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=... 108 1e-22 UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter rube... 108 2e-22 UniRef50_A6BG46 Putative uncharacterized protein n=2 Tax=Clostri... 108 2e-22 UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter hepari... 108 2e-22 UniRef50_C7RHU0 Pseudouridine synthase n=3 Tax=Anaerococcus RepI... 108 2e-22 UniRef50_A0JV58 Pseudouridine synthase n=37 Tax=Actinobacteridae... 108 2e-22 UniRef50_Q6SI36 Pseudouridine synthase n=1 Tax=uncultured marine... 108 2e-22 UniRef50_A3HY40 Pseudouridine synthase n=1 Tax=Algoriphagus sp. ... 107 2e-22 UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae Re... 107 2e-22 UniRef50_C9L6I1 Pseudouridine synthase n=1 Tax=Blautia hansenii ... 107 2e-22 UniRef50_B3DRY9 Pseudouridine synthase n=7 Tax=Bifidobacterium R... 107 3e-22 UniRef50_B9HLH3 Predicted protein n=5 Tax=Magnoliophyta RepID=B9... 107 3e-22 UniRef50_Q4Z2R8 Pseudouridine synthetase, putative n=3 Tax=Plasm... 107 3e-22 UniRef50_A0M7H0 Ribosomal large subunit pseudouridine synthase F... 107 3e-22 UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3... 107 3e-22 UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes Rep... 107 3e-22 UniRef50_Q14P18 Pseudouridine synthase n=2 Tax=Mollicutes RepID=... 107 3e-22 UniRef50_A9NFY3 Pseudouridine synthase n=1 Tax=Acholeplasma laid... 107 3e-22 UniRef50_A9NHG2 Ribosomal small subunit pseudouridine synthase n... 107 4e-22 UniRef50_D1B9Q8 Pseudouridine synthase n=1 Tax=Thermanaerovibrio... 107 5e-22 UniRef50_D0MUX7 Ribosomal large subunit pseudouridine synthase F... 107 5e-22 UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1... 107 5e-22 UniRef50_UPI00016B2405 pseudouridine synthase n=6 Tax=candidate ... 106 5e-22 UniRef50_A5TWE7 Pseudouridine synthase n=10 Tax=Fusobacterium Re... 106 6e-22 UniRef50_C6JI84 Pseudouridine synthase n=2 Tax=Fusobacterium Rep... 106 7e-22 UniRef50_C8NZC3 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 105 9e-22 UniRef50_C7H5G4 Pseudouridine synthase n=8 Tax=Clostridiales Rep... 105 1e-21 UniRef50_C6HYA4 Pseudouridine synthase n=1 Tax=Leptospirillum fe... 105 1e-21 UniRef50_B8DUD9 Pseudouridine synthase n=8 Tax=Bifidobacterium R... 105 1e-21 UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 105 1e-21 UniRef50_C9RK28 Pseudouridine synthase n=1 Tax=Fibrobacter succi... 105 2e-21 UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9... 104 2e-21 UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterinea... 104 3e-21 UniRef50_O96270 Pseudouridine synthase, putative n=2 Tax=Plasmod... 104 3e-21 UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes Rep... 103 4e-21 UniRef50_A8G0B7 Pseudouridine synthase n=19 Tax=Shewanella RepID... 103 5e-21 UniRef50_A7HJ21 Pseudouridine synthase n=3 Tax=Thermotogaceae Re... 103 5e-21 UniRef50_UPI0001C337CA ribosomal large subunit pseudouridine syn... 103 5e-21 UniRef50_D2B9T7 Pseudouridine synthase n=18 Tax=Actinobacteria (... 103 5e-21 UniRef50_A1K3P0 Pseudouridylate synthase n=3 Tax=Betaproteobacte... 102 1e-20 UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae... 102 1e-20 UniRef50_Q0F269 Pseudouridine synthase n=1 Tax=Mariprofundus fer... 102 1e-20 UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gin... 102 1e-20 UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uen... 102 1e-20 UniRef50_A9KPL1 Pseudouridine synthase n=63 Tax=Bacteria RepID=A... 102 1e-20 UniRef50_A5ZYR1 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 101 2e-20 UniRef50_C2KPR0 Pseudouridine synthase n=3 Tax=Mobiluncus RepID=... 101 2e-20 UniRef50_Q1IJT7 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 101 2e-20 >UniRef50_P0AA45 Ribosomal small subunit pseudouridine synthase A n=156 Tax=Gammaproteobacteria RepID=RSUA_ECO57 Length = 231 Score = 479 bits (1232), Expect = e-134, Method: Compositional matrix adjust. Identities = 231/231 (100%), Positives = 231/231 (100%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP Sbjct: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR Sbjct: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE Sbjct: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV Sbjct: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 >UniRef50_Q8ZGM2 Ribosomal small subunit pseudouridine synthase A n=134 Tax=Gammaproteobacteria RepID=RSUA_YERPE Length = 235 Score = 402 bits (1034), Expect = e-111, Method: Compositional matrix adjust. Identities = 189/230 (82%), Positives = 208/230 (90%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF++QQLGVSRA+ RE+R RVT+DGE+V++ A KL PE DV +DGNPL Q GP Sbjct: 1 MRLDKFLSQQLGVSRALVARELRAKRVTIDGEVVKSGAIKLTPEQDVRFDGNPLQQMVGP 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 RYFMLNKPQGYVCST+DPDHPTVLYFLDEPVA+KLHAAGRLDIDTTGLVLMTDDGQWSHR Sbjct: 61 RYFMLNKPQGYVCSTEDPDHPTVLYFLDEPVAYKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +TSPRHHCEKTYLVTLE P++DDTA+QFA GVQL+NEK LTKPA L+VI P +VRLTISE Sbjct: 121 VTSPRHHCEKTYLVTLEHPLSDDTAQQFADGVQLYNEKSLTKPAQLDVIEPQRVRLTISE 180 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GRYHQVKRMFAAVGN V+ELHRERIG ITLD DLAPGEYRPLT EEIASV Sbjct: 181 GRYHQVKRMFAAVGNRVIELHRERIGDITLDDDLAPGEYRPLTTEEIASV 230 >UniRef50_Q2NSN0 Pseudouridine synthase n=7 Tax=Gammaproteobacteria RepID=Q2NSN0_SODGM Length = 235 Score = 346 bits (887), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 165/229 (72%), Positives = 186/229 (81%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF++QQLGVSRA+ RE+R RVTVDGEI++ AF+L PEH V +DGN L Q Sbjct: 1 MRLDKFLSQQLGVSRALVARELRAKRVTVDGEIIKQGAFQLRPEHQVRFDGNLLHQILTA 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 RYFMLNKPQGYVCSTDDPDHPT+LYF+DEPV KLHAAGRLDIDTTGLVL+TDDGQWS+R Sbjct: 61 RYFMLNKPQGYVCSTDDPDHPTILYFIDEPVPDKLHAAGRLDIDTTGLVLLTDDGQWSYR 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +TSPRHHCEK YLVTLE P+A + QFA G+ L EK T+PA L ++P +VRLTISE Sbjct: 121 LTSPRHHCEKDYLVTLEQPLAAEITAQFAAGILLRGEKLPTRPARLATLSPLKVRLTISE 180 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 GRYHQVKRMFAAVGN VV LHRERIG I LDA L PGEYR LT E+A Sbjct: 181 GRYHQVKRMFAAVGNRVVALHRERIGAIVLDAHLQPGEYRALTAGEVAG 229 >UniRef50_Q1YVK2 Pseudouridine synthase n=3 Tax=Gammaproteobacteria RepID=Q1YVK2_9GAMM Length = 235 Score = 222 bits (565), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 114/231 (49%), Positives = 152/231 (65%), Gaps = 1/231 (0%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RLDK+I+ +SR R I+ VT+D E N A K+ + + +G+ ++ Sbjct: 2 LRLDKYISNATDLSRVEVKRYIKYGDVTIDDEKAINGAQKVSGDETICIEGSAISFAEN- 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 RYFMLNKP G V +T D ++ T L + E + +L AGRLDIDTTGL+L+TDDGQW+HR Sbjct: 61 RYFMLNKPAGVVSATKDSNNSTALDLIFEHRSDELQIAGRLDIDTTGLLLITDDGQWNHR 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +TSPR C+K Y VTL P+ D AE+ A GV L EK PA +E I V L+I+E Sbjct: 121 LTSPRSDCQKIYRVTLGIPITPDYAEKLANGVWLKGEKHPCLPATMEQIDDETVLLSIAE 180 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 G+YHQVKRMFAA+GNHV LHR ++GGI LD L PG+YR LT+ E+AS++ Sbjct: 181 GKYHQVKRMFAALGNHVEALHRTQVGGIILDESLEPGDYRALTDAEVASIM 231 >UniRef50_Q21JF0 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q21JF0_SACD2 Length = 242 Score = 213 bits (543), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 113/242 (46%), Positives = 146/242 (60%), Gaps = 13/242 (5%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKFIA SR R I+ V VD +I + +F + + V DG + + P Sbjct: 1 MRLDKFIANNSSYSRTEVKRLIKNKTVCVDKKITTDPSFTVTNLNTVRIDGE-IIEAIKP 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEP------------VAWKLHAAGRLDIDTTGL 108 Y MLNKP GYVC+ D H V+ + E A L AGRLD+DTTGL Sbjct: 60 LYIMLNKPTGYVCANKDNIHSPVVDLITEQHARQSDQTPPKYRAQSLQIAGRLDVDTTGL 119 Query: 109 VLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEV 168 VL+TD+G+W+HR+TSP C K Y V LE P+ D + ++GV LH EK T PA +E+ Sbjct: 120 VLLTDNGEWNHRVTSPNKACFKRYRVKLEKPLDDAAIKLLSEGVMLHGEKAATLPATVEL 179 Query: 169 ITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 I+ T+V L+I EGR+HQVKRMF VG VV+LHRE IG I LD +L PG++R LT EEI Sbjct: 180 ISNTEVLLSIQEGRFHQVKRMFVKVGTCVVKLHREAIGAIELDTNLKPGQWRHLTNEEIE 239 Query: 229 SV 230 ++ Sbjct: 240 AI 241 >UniRef50_C5BI29 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=C5BI29_TERTT Length = 238 Score = 208 bits (529), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 108/234 (46%), Positives = 143/234 (61%), Gaps = 9/234 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF+A SR+ ++ R+ V+G+ + L + +V D PL Q Sbjct: 1 MRLDKFVADNTSYSRSQVRGLLKAKRIRVNGQTALAPSAALKSDDEVTLDDAPL-QARSD 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVL-------YFLDEPVAWKLHAAGRLDIDTTGLVLMTD 113 Y ML+KP GYVC+ D +HPTV + + +A +L AGRLD+DTTGLVL+T Sbjct: 60 VYLMLHKPAGYVCANTDAEHPTVFDLPGFSARYSNADIA-RLQIAGRLDLDTTGLVLITS 118 Query: 114 DGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ 173 DGQW+HRITSPR C K Y V +P+A +T FA+GV LH EK T PA LE+++ Sbjct: 119 DGQWNHRITSPRQKCRKAYYVECAAPIAAETKSAFAEGVLLHGEKRPTLPAELELLSANT 178 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 L I +G YHQVKRMFA+ GN V+ LHR +IG + L+ DL PG+ R LT +EI Sbjct: 179 ANLYIEQGIYHQVKRMFASTGNKVLRLHRFQIGALALETDLLPGDMRALTSDEI 232 >UniRef50_A1U6Q2 Pseudouridine synthase n=4 Tax=Gammaproteobacteria RepID=A1U6Q2_MARAV Length = 231 Score = 207 bits (526), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 110/231 (47%), Positives = 139/231 (60%), Gaps = 1/231 (0%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLD++++ +SR A + + RV VDGE R A ++ E V DG P+ G Sbjct: 1 MRLDQYLSNGTELSRKEAKKVVSAGRVKVDGETCRQANRQVEAEQSVHLDGKPV-NPPGD 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y M++KP G + +T D PT L L +A ++H AGRLD DTTGL+L+T DGQWSH Sbjct: 60 IYLMMHKPAGVLSATTDSSQPTALDLLPRGLASRVHIAGRLDKDTTGLLLLTSDGQWSHA 119 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +TSPR C K+Y V L + + KGV L+ E T+PA + V + LTI E Sbjct: 120 VTSPRRECRKSYRVWLAEAIPEQACRALEKGVMLNGETTETRPAEVRVHNNQLIDLTIGE 179 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 GRYHQVKRM AAVGN V LHR RIG I LD LAPGE+R LT +EI SV Sbjct: 180 GRYHQVKRMLAAVGNRVEALHRFRIGSIELDDKLAPGEFRALTYQEIRSVT 230 >UniRef50_B7VP37 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=B7VP37_VIBSL Length = 241 Score = 204 bits (519), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 102/229 (44%), Positives = 152/229 (66%), Gaps = 3/229 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDK++ + +++ A + I+ V+V+ +V + + ++ + + +G+ L + Sbjct: 10 MRLDKYLCKSTELTKLEAVQRIQNGEVSVNSVVVLDESTQVHESNAILLNGDALTLRE-F 68 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 RY +++KP G +CS D +P++ +L+ A +LH AGRLD DTTGLVL+TDDG+WS Sbjct: 69 RYILMHKPAGTICSNIDEVYPSLFNYLELEKASELHIAGRLDADTTGLVLITDDGRWSFN 128 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 IT P C+K Y V L + DD A++F G+QL E+ LT+PA LEVIT +V LTI+E Sbjct: 129 ITLPTKSCKKVYRVILSRDIKDDVADKFKAGIQLQGEQKLTRPAELEVITSKEVLLTITE 188 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 G++HQVKRMFAAVGN VV LHRE+IG + LD + G++R LT+ E+ S Sbjct: 189 GKFHQVKRMFAAVGNRVVGLHREQIGDVRLDVE--AGQWRYLTKAEVDS 235 >UniRef50_Q9I5J6 Ribosomal small subunit pseudouridine synthase A n=25 Tax=Gammaproteobacteria RepID=RSUA_PSEAE Length = 230 Score = 197 bits (502), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 108/230 (46%), Positives = 136/230 (59%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLD+F+A +SR A I G + VDG++VR+ ++ V D L Sbjct: 1 MRLDRFLANLPELSRRDAQMLIAGGHLRVDGQVVRDGTHEVRVFSRVELDERLLQAGKPA 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 RY+ML+KP G V +T DP HPTVL E + LH GRLD +TTGL+L+T+DGQWS R Sbjct: 61 RYYMLHKPMGCVSATRDPQHPTVLDLFPEDLRDDLHIGGRLDYNTTGLMLLTNDGQWSRR 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +T P +K Y V E+P+ + FA G+ E +T PA LE I P RLT+ E Sbjct: 121 LTLPGSRRDKVYYVETEAPIDQRYVDAFAAGLHFRFEDLVTLPAQLEPIGPRCARLTLHE 180 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GRYHQVKRMF N V+ LHRER+G I LD L PG +RPL EEI SV Sbjct: 181 GRYHQVKRMFGHFDNKVLRLHRERMGDICLDPQLPPGAWRPLNAEEICSV 230 >UniRef50_A6D701 Pseudouridine synthase (Fragment) n=2 Tax=Vibrionaceae RepID=A6D701_9VIBR Length = 164 Score = 194 bits (492), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 98/161 (60%), Positives = 115/161 (71%) Query: 70 GYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCE 129 G+VCS +D + T LDE LH AGRLD+DTTGLVL+TDDGQWSHRITSP+H C Sbjct: 1 GFVCSHEDGFNHTAFVLLDEVKMENLHFAGRLDVDTTGLVLITDDGQWSHRITSPKHKCA 60 Query: 130 KTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEGRYHQVKRM 189 KTY V L PV D+ + F +G++L NEK T PA LE+I +V LTI EG+YHQVKRM Sbjct: 61 KTYRVWLADPVQDNYIKAFEEGIELRNEKAPTLPAQLEIIDEKEVLLTIHEGKYHQVKRM 120 Query: 190 FAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 FAA+GN V LHRE +G I LD L PGEYR LT+EEI SV Sbjct: 121 FAALGNKVEGLHRESVGDIVLDEMLEPGEYRYLTQEEIDSV 161 >UniRef50_B1KQS3 Pseudouridine synthase n=20 Tax=Gammaproteobacteria RepID=B1KQS3_SHEWM Length = 239 Score = 191 bits (485), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 102/238 (42%), Positives = 145/238 (60%), Gaps = 10/238 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF+ + ++R A I +V V+GE V + + ++ + + +G Sbjct: 1 MRLDKFLCKSTQLTRHEACELILAGKVLVNGESVVSPSAQVHENNHIRLEGGQRLTARAS 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 RY ML+KP + S D DHP+V F++ +LH AGRLD DTTGL+L+TDDG+WS Sbjct: 61 RYIMLHKPADTLSSNVDGDHPSVFNFINLEHTSELHIAGRLDADTTGLLLITDDGRWSFN 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTA--------EQFAKGVQLHNEKDLTKPAVLEVITPT 172 + +P++HCEK Y V L + + A +F +G+ L E+ LT PA LE ++P Sbjct: 121 VFNPKYHCEKVYRVYLRDSIEGEIAGEIDAELKARFKQGLDLQGEQALTLPAKLEFVSPK 180 Query: 173 QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +V LTI+EGRYHQ+KRMFA VGN V LHRE++G I L D+ G++R LT EEI S+ Sbjct: 181 EVLLTITEGRYHQMKRMFARVGNRVNALHREQVGKIKL--DMPVGQWRYLTREEIDSI 236 >UniRef50_B9MRL6 Pseudouridine synthase n=2 Tax=Clostridia RepID=B9MRL6_ANATD Length = 233 Score = 189 bits (481), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 99/227 (43%), Positives = 138/227 (60%), Gaps = 2/227 (0%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF+ SR+ + IR VTV+G+ + FK+ PE D+ +A+ Sbjct: 1 MRLDKFLTHCGFGSRSQVKKLIREGIVTVNGKQIVEVDFKINPEEDIIEVDGRVAKFSKQ 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWSH 119 Y M+NKP+GYVCS ++ TV + + + ++ LH GRLD D GL+++TDDG+++H Sbjct: 61 IYIMMNKPKGYVCSNEELASLTVFSLISDDLKYRDLHTVGRLDKDAEGLLIITDDGEYTH 120 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 R+ SP+ EK YLV LE V ++ +F G+ L + T PA +I T V+L I Sbjct: 121 RVISPKKRIEKEYLVRLEKEVDEEKLNEFENGIILDDGYK-TLPAKYTIIDSTTVKLCIY 179 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 EG+YHQVKRMF A+GN VV+L R RIGG+ LD L PGEYR + EE Sbjct: 180 EGKYHQVKRMFEAIGNKVVDLKRLRIGGLNLDQSLKPGEYRVMKVEE 226 >UniRef50_A6DMJ6 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DMJ6_9BACT Length = 239 Score = 189 bits (480), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 106/230 (46%), Positives = 142/230 (61%), Gaps = 5/230 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDG--EIVRNAAFKLLPEHDVAYDGNPLAQQH 58 +RLDK IA+ ++R+ A R ++ V V+ + V + L + V +DG L + Sbjct: 8 IRLDKMIAKCTDLTRSEATRALKNGFVKVNDIPQKVGKSTIDLANDV-VTFDGEVLEYRE 66 Query: 59 GPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKL-HAAGRLDIDTTGLVLMTDDGQW 117 YFMLNKP+GYVC+ D TVL L +A + + GRLDIDTTGLV++TDDG W Sbjct: 67 TI-YFMLNKPKGYVCAAKDERLKTVLDLLPPALASREPFSCGRLDIDTTGLVILTDDGTW 125 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT 177 +H ITSP+ CEK+YLV S ++D+ +GV L + +T PA +E I RL Sbjct: 126 AHGITSPKRKCEKSYLVGSVSELSDEDMRNLEQGVYLDGDDKITAPAKIEKIDEKTYRLK 185 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 I+EGRYHQVKRMF AV N V LHRE+IGG++LD DL G +R LT EE+ Sbjct: 186 ITEGRYHQVKRMFEAVDNMVKSLHREQIGGLSLDDDLDEGNWRDLTAEEV 235 >UniRef50_A3JEU2 Pseudouridine synthase n=2 Tax=Marinobacter RepID=A3JEU2_9ALTE Length = 250 Score = 189 bits (480), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 101/226 (44%), Positives = 138/226 (61%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 M+L + ++ Q +SR A I +V V+ R A + V+ +G L Q H Sbjct: 16 MKLSRIVSNQPDISRKQANWLIATGQVYVNDLSCRTADADVDEFAAVSVNGKTLQQGHCA 75 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y ML+KP GY+ +T+D HPTVL L ++ LH AGRLD TTGL+++T++G WS + Sbjct: 76 HYIMLHKPAGYLSATEDDTHPTVLQLLPPGLSQCLHIAGRLDRATTGLMILTNNGTWSRQ 135 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +T P K Y VT P+ DT ++FA+G+ E+ T PA LE++ PT RLTI E Sbjct: 136 LTLPGMGIAKVYRVTTAYPIGPDTPQRFAEGIWFEYEQLTTAPATLELLEPTLARLTIYE 195 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 GRYHQVKRMF AVGN V+ LHRE+IG + L++DLA G +R LT E Sbjct: 196 GRYHQVKRMFHAVGNRVIALHREQIGHLQLNSDLAEGNFRMLTGSE 241 >UniRef50_C0FY58 Pseudouridine synthase n=3 Tax=Clostridiales RepID=C0FY58_9FIRM Length = 261 Score = 185 bits (469), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 100/234 (42%), Positives = 143/234 (61%), Gaps = 6/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 MRLDKF+ + +R+ + ++ ++TV+GEIV K+ PE+D ++Y G P+ Sbjct: 25 MRLDKFLTEMGLGTRSEVKKILKTKQITVNGEIVTKPETKVAPENDQISYKGEPVTYCE- 83 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y++ KP G V +T+D H TV+ +L + V L GRLDIDT GL+L+T+DG +H Sbjct: 84 YEYYLFYKPAGCVTATEDQLHKTVMDYLTDTVRSDLFPVGRLDIDTEGLLLITNDGALAH 143 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP---TQVRL 176 + SP H EKTY ++ V + F GV + EK LTKP L ++ +++ L Sbjct: 144 DLLSPAKHVEKTYYAVIDGVVTEKDVNSFENGVDIGEEK-LTKPGKLRILKSEPESEIEL 202 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 TI+EGR+HQVKRMF AVG V+ L R +G + L DL PGEYRPLTEEEI ++ Sbjct: 203 TITEGRFHQVKRMFEAVGKKVLYLKRISMGPLQLTDDLKPGEYRPLTEEEITAL 256 >UniRef50_UPI0001745920 putative pseudouridylate synthase n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745920 Length = 235 Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 94/229 (41%), Positives = 134/229 (58%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 M L + IA+ G+ R A + I G RV V+ ++V + ++ V D + + Sbjct: 1 MFLSRLIARHKGMGRTAAMQAIAGKRVKVEDQVVTDGQHEVDRFSTVWLDDTLVQEGESA 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y ML+KP GY+ +T DP HPTV+ +D P LH AGRLD ++GL+L+T+DG+WS R Sbjct: 61 LYIMLHKPVGYLSATRDPQHPTVIDLIDHPARETLHIAGRLDRSSSGLLLLTNDGRWSRR 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +T P +K YLV P+A + E FAKG H E T PA L ++ R+T+ E Sbjct: 121 LTEPGEKVDKVYLVETAEPIAPEAVELFAKGFYFHTEDLTTLPAELGILGERLARVTLHE 180 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 GRYHQ+KRMF VGN V+ LHRE IG + L +L PG++R + + + S Sbjct: 181 GRYHQIKRMFHRVGNRVISLHRESIGSLVLPVELFPGQWREIRRDVLRS 229 >UniRef50_Q4FVR0 Pseudouridine synthase n=4 Tax=Moraxellaceae RepID=Q4FVR0_PSYA2 Length = 239 Score = 180 bits (456), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 95/232 (40%), Positives = 140/232 (60%), Gaps = 6/232 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKL-LPEHDVAYDGNPLAQQHG 59 MRLDKF+++ +SR + + + VTV+ +++++ + + DV + G PL+ G Sbjct: 6 MRLDKFLSKATELSRKESKKILHAGEVTVNEQVIKDPGVHVDIVNDDVQWAGEPLSVATG 65 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 RY +L+KP+G+ C+ ++P V + P L AGRLD+DTTG +L++DDG W H Sbjct: 66 NRYILLHKPEGFECTLKAKEYPIVTDLIAVPELGSLRIAGRLDVDTTGALLISDDGGWLH 125 Query: 120 RITSPRHHCEKTYLVTLESPVADDTA----EQFAKGVQLHNEKDLTKPAVLEVITPTQVR 175 R+TSP+H K Y +TL + D ++ A+G+ L + + TKPA LE I T R Sbjct: 126 RVTSPKHEHAKVYELTLADAMDSDAQANAIKEVAEGILLEGDHEETKPATLEFIDETHAR 185 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 LT+ +G+YHQVKRM GN VVELHR +G ITLD L G+ R LT EE+ Sbjct: 186 LTLEQGKYHQVKRMMGYFGNRVVELHRASVGHITLDG-LEKGDSRFLTPEEV 236 >UniRef50_B2V6W2 Pseudouridine synthase n=5 Tax=Bacteria RepID=B2V6W2_SULSY Length = 244 Score = 178 bits (452), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 98/237 (41%), Positives = 149/237 (62%), Gaps = 8/237 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 MRLDKF++ Q SR+ + I+ V V+ EIV++ ++ + P D V + + + Sbjct: 1 MRLDKFLSNQGFGSRSQVQKLIKKGFVKVNDEIVKDPSYHIDPMKDKVELEDEEILYKEN 60 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVL-YFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 YFMLNKP GY+ +T+D ++PTVL F D P+A KL GRLDIDT GL+++T DGQ+ Sbjct: 61 -HYFMLNKPAGYITATEDEEYPTVLDLFSDLPIASKLFPVGRLDIDTEGLLILTTDGQFG 119 Query: 119 HRITSPRHHCEKTYLVTLESPVAD-DTAEQFAKGVQLHNEKDLTKPAVLEVIT----PTQ 173 HR++ P+ + EK Y +E +++ D +E KG+ L EK TKP ++V+ ++ Sbjct: 120 HRLSHPKWNIEKEYYAIVEGDISNIDFSESENKGIYLKKEKYQTKPFKVKVLNTSKDKSE 179 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + +T++EG+YH VKR+ +G V+ L R RIG + LD DL PGE+R LTE+EI + Sbjct: 180 ILITLTEGKYHIVKRIMQELGYPVLYLKRIRIGNLKLDEDLLPGEFRELTEKEIKDL 236 >UniRef50_B8KTF1 Pseudouridine synthase n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KTF1_9GAMM Length = 311 Score = 174 bits (442), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 94/222 (42%), Positives = 130/222 (58%), Gaps = 2/222 (0%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RLDK +++Q GV R + RVT+DG + R+AA + P +A DG L + P Sbjct: 91 RLDKHLSKQTGVPRKAVRLMLAQARVTIDGVLARDAAEVINPFSRIAVDGVGLPT-NTPH 149 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y MLNKP G VC+T D H TV+ LD P LH GRLDI +TGLVL+T+DGQWS R+ Sbjct: 150 YIMLNKPSGVVCATRDARHRTVIDILDLPFQHTLHIVGRLDIQSTGLVLLTNDGQWSRRL 209 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEG 181 + P+ K Y VT E + + F G+ E T+PA L +I + +T++EG Sbjct: 210 SLPQSKFAKHYRVTTEQAITSEQIAGFEAGIFFAYEGLTTRPARLHLINSHEANVTLTEG 269 Query: 182 RYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLT 223 RYHQ++RMF GN V+ +HR G L ++L PG+YR ++ Sbjct: 270 RYHQIRRMFGRYGNRVLSIHRYATGPYVL-SNLRPGQYREIS 310 >UniRef50_D1PIW4 Pseudouridine synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIW4_9FIRM Length = 237 Score = 174 bits (441), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 98/232 (42%), Positives = 141/232 (60%), Gaps = 5/232 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDK+++++ G++R+ + + I RV V+G + R A ++ + +A DG PLA + Sbjct: 2 MRLDKYLSERTGLTRSESRKAITKGRVAVNGMVCRKADTQVAEDAAIAVDGTPLAGSYQK 61 Query: 61 R-YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWS 118 Y MLNKP+G V ++ D TV+ + + L AGRLD +TG VL+TDDG + Sbjct: 62 YVYIMLNKPEGVVSASRDKRDTTVVDLVAADFPRRALFPAGRLDKTSTGFVLLTDDGALA 121 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT--PTQVRL 176 H + SP HH +K YLVTL++P+ D FA GV L + + + PA E P V++ Sbjct: 122 HDLLSPAHHVDKQYLVTLDTPLTDAMRAGFAAGVTLADGETMA-PAEAEPAGEDPCVVKV 180 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 T+ +G YHQ+KRMF G V LHR IGG+ LDA LAPG++R LT EE+A Sbjct: 181 TLHQGVYHQIKRMFGVYGAGVNALHRYAIGGVALDAALAPGQWRELTAEELA 232 >UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8D3_9FIRM Length = 233 Score = 174 bits (440), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 97/233 (41%), Positives = 139/233 (59%), Gaps = 5/233 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDK++A+ +R+ A + RV V+G + + +L VA DG L Q Sbjct: 1 MRLDKYLAETAQCTRSEAKTMLAKGRVQVNGAVCKKGDTQLKDTDTVAVDGALLTYQKFV 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWSH 119 Y MLNKP+G V ++ D TV+ + + + L AGRLD +TG VL+TDDG ++H Sbjct: 61 -YLMLNKPEGVVSASTDKRDTTVVDLVGDAYPRRELFPAGRLDKTSTGFVLLTDDGGFAH 119 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP--TQVRLT 177 I SPRHH KTY VT+++P+ + FA GV L + L+ PA + ++P VR+ Sbjct: 120 DILSPRHHVSKTYTVTIDTPLTQEMCTGFAAGVTLADGTALS-PAEVTALSPDGLTVRVV 178 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + +G YHQ+KRMF G V LHRE IGG+ LDA LAPG++R L++EE+A + Sbjct: 179 LRQGVYHQIKRMFGVYGAGVNALHREAIGGLALDAQLAPGQWRELSDEEVAKI 231 >UniRef50_A5KLG0 Pseudouridine synthase n=8 Tax=Bacteria RepID=A5KLG0_9FIRM Length = 261 Score = 173 bits (438), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 100/260 (38%), Positives = 143/260 (55%), Gaps = 32/260 (12%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +RLDK++ + +R+ +EI V+V+GEI + A K+ E D + + G + G Sbjct: 3 LRLDKYLTEMGCGTRSQVKKEILKGSVSVNGEIAKKAERKVDTEKDEIIFKGEKIFYA-G 61 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 YFMLNKP G V +T+D TV+ + E L AGRLD DT GL+L+T+DGQ +H Sbjct: 62 YEYFMLNKPAGVVSATEDKKERTVIDLIKESKRKDLFPAGRLDKDTEGLLLITNDGQLAH 121 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP-------- 171 R+ SP+ H +K Y ++ V ++ F KGV + +EK T PA LE+++ Sbjct: 122 RLLSPKKHVDKIYYAKIKGIVTEEDVRLFEKGVHIGDEKP-TMPAALEILSVQKERRKEK 180 Query: 172 ---------------------TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITL 210 +++ LTI EGR+HQVKRMF AVG VV L R + G +TL Sbjct: 181 IKEQKILPETKNETDEKEDGYSEIYLTIKEGRFHQVKRMFRAVGKEVVYLKRIQFGTLTL 240 Query: 211 DADLAPGEYRPLTEEEIASV 230 D L PG+YR LTEEE+ + Sbjct: 241 DPSLKPGQYRKLTEEEVEQL 260 >UniRef50_B5JX71 Pseudouridine synthase n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JX71_9GAMM Length = 231 Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 100/227 (44%), Positives = 134/227 (59%), Gaps = 1/227 (0%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RLD++I ++R ++ +TV+ E+ L E DV + + P Sbjct: 3 LRLDRYIGNNTELTRREVKFLLKAGEITVNDEVPSKPGLHL-KEGDVVAVQGRVVEPRQP 61 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 RYFML+KP + + +H L ++EP +LH GRLD+DTTGL+L+TDDGQWS R Sbjct: 62 RYFMLHKPPECISARSTEEHLGALDLIEEPFHDELHIVGRLDLDTTGLLLVTDDGQWSQR 121 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 + SPRH K Y VT P+A A +F G+ L E T PA L+V+ + RLTI+E Sbjct: 122 LRSPRHKVPKVYWVTTAKPIASTVAARFEAGIYLKTEDHTTAPAQLDVVAECRARLTITE 181 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 G++HQVKRMFAAV N V LHR +G I LD DL PGEYR LT +EI Sbjct: 182 GKFHQVKRMFAAVDNEVTALHRASVGEIVLDEDLEPGEYRALTAQEI 228 >UniRef50_D1AL84 Pseudouridine synthase n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AL84_SEBTE Length = 233 Score = 172 bits (435), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 98/232 (42%), Positives = 141/232 (60%), Gaps = 5/232 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 MR+DKF+A +R ++ R++V+ E+V A + ++D VA+DG + + Sbjct: 1 MRIDKFLANSGIGTRKEVKELLKKKRISVNDEVVTEAKTHIDEDNDFVAFDGKRIEFKEF 60 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAW-KLHAAGRLDIDTTGLVLMTDDGQWS 118 Y MLNKPQ + +TDD H TVL L+EP+ L GRLD DT GL+++T+DG+ + Sbjct: 61 L-YIMLNKPQDVISATDDERHRTVLDLLEEPLTKVGLFPVGRLDKDTEGLLVLTNDGKMA 119 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 H + SP+ H K Y V L+ ++ + A GV+L E TKPA +E IT +V + I Sbjct: 120 HELLSPKKHVPKRYYVELKKTLSKEEAAILENGVEL--ETFTTKPAKVEFITEDKVYIII 177 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 SEG+YHQVKRMF VGN V+ L R +G + LD +LAPGEYR LT +E+ + Sbjct: 178 SEGKYHQVKRMFKCVGNRVLFLKRTGMGNLGLDENLAPGEYRELTSDELEQL 229 >UniRef50_A6WK95 Pseudouridine synthase n=12 Tax=Gammaproteobacteria RepID=A6WK95_SHEB8 Length = 256 Score = 171 bits (434), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 94/229 (41%), Positives = 134/229 (58%), Gaps = 1/229 (0%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RLD+++ QL R + RV VDG IV++ ++ + D + L Q + P Sbjct: 28 RLDRYLCTQLHTHRKAVRELLLSGRVRVDGLIVKDMDRQVDEFSHIQLDEHIL-QANAPV 86 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y ML+KP G V +T D H TV+ LD +LH AGRLD++++GL+L+T+D +WS + Sbjct: 87 YVMLHKPIGVVSATKDIQHKTVIDLLDCEARDELHIAGRLDLNSSGLLLLTNDSRWSDAL 146 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEG 181 SP H +K Y VTL +P+ ++ FA+G+ E T+PA L ++ +T+ EG Sbjct: 147 MSPTHKVDKVYRVTLANPITEEYIAAFAEGMYFGFEDITTQPAKLVILADNVAEVTLHEG 206 Query: 182 RYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +YHQ+KRMF N VV LHR IG I LD LAPGE R LT E+AS+ Sbjct: 207 KYHQIKRMFGRFRNPVVGLHRLSIGDIVLDEKLAPGESRALTAAEVASI 255 >UniRef50_Q2W4E4 Pseudouridine synthase n=20 Tax=cellular organisms RepID=Q2W4E4_MAGSA Length = 247 Score = 169 bits (427), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 108/235 (45%), Positives = 136/235 (57%), Gaps = 10/235 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTV-DGEIVRNAAFKLLPEHDVAYDGNPLAQQHG 59 MRL + IA S+ I+ RVT+ DG ++ + D+ DG PL G Sbjct: 15 MRLIRLIANLGYGSQRDVKAMIKAGRVTLADGTVLDDGTKAA--HDDIRVDGEPLDPPPG 72 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK---LHAAGRLDIDTTGLVLMTDDGQ 116 ML+KP+GY CST DP V L E + + GRLD D+TGL+L+TDDG Sbjct: 73 -LVLMLHKPEGYTCSTSDPGR-IVYELLPERFMHRNPIVAPVGRLDRDSTGLLLLTDDGP 130 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKG-VQLHNEKDLTKPAVLEVITPTQVR 175 +HRITSP+ H KTY VTL P++ + FA G + L +E PA L V P R Sbjct: 131 LAHRITSPKRHVPKTYEVTLARPLSGEEGAVFASGTLMLRSESTPLAPAELVVSGPQTAR 190 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +TI+EGRYHQVKRMFAAVGNHV LHR IGG+ L DLA G++RPL+ EIA V Sbjct: 191 ITITEGRYHQVKRMFAAVGNHVERLHRAAIGGLDL-GDLAEGQWRPLSPAEIALV 244 >UniRef50_Q0VQK2 Pseudouridine synthase n=2 Tax=Alcanivorax RepID=Q0VQK2_ALCBS Length = 248 Score = 168 bits (426), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 92/225 (40%), Positives = 134/225 (59%), Gaps = 1/225 (0%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RLD+F++ +L +SR+ + RV V+G++ R+ ++ V DG L Q + PR Sbjct: 14 RLDRFLSARLQMSRSNLRLLLAAGRVRVNGQVERDRQRRIGLFDAVVCDGEIL-QANRPR 72 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y M+NKP G V +T D HPTVL L LH AGRLD ++TGLVL+T+DG WS R+ Sbjct: 73 YLMINKPAGVVSATRDEHHPTVLELLPRGQREGLHLAGRLDFNSTGLVLLTNDGAWSRRL 132 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEG 181 + P K Y V+++ P++D+ F++ + E+ T+PA L + + + + + EG Sbjct: 133 SLPETGLWKHYRVSVDKPLSDEDVVSFSQRMWFDFEQIYTQPARLTIRSSFEADVWLHEG 192 Query: 182 RYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 +YHQ+KRMF G V LHR +G I LDA LAPGE R LT+ E Sbjct: 193 KYHQIKRMFGRTGKKVTALHRLAVGRIQLDAYLAPGESRELTQAE 237 >UniRef50_B0S303 Pseudouridine synthase n=2 Tax=Finegoldia magna RepID=B0S303_FINM2 Length = 235 Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 86/227 (37%), Positives = 135/227 (59%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLD+ +++ +R + ++ +TV+ V+ ++ + +DV + + + Sbjct: 1 MRLDRMLSEMKIATRKEIKQMVKKGIITVNDVTVKKSSEHIDENNDVVKIYDEVIEYRKF 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 YF++NK +G + DP H TV+ + E + L+ GRLD+DTTGL+++T+DG+++H Sbjct: 61 LYFVMNKRKGVTSHSKDPMHKTVIDDMGELCVFDLNPVGRLDLDTTGLLIITNDGKFAHN 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 + SP+ K Y VTL V + + F KG++L E +TKPA +E+I LTI E Sbjct: 121 LISPKKDVSKKYKVTLRDKVDEKYNDTFEKGIKLMPEDIVTKPAKMEIIDDYNCYLTIKE 180 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 G+YHQVKRMF VGN VVEL R +IG L DL G++R LT+EE+ Sbjct: 181 GKYHQVKRMFEKVGNEVVELQRVQIGDFKLPEDLEEGDFRELTDEEL 227 >UniRef50_Q21EB0 Pseudouridine synthase n=14 Tax=Gammaproteobacteria RepID=Q21EB0_SACD2 Length = 249 Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 92/230 (40%), Positives = 131/230 (56%), Gaps = 5/230 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RLD+FI+ ++R I R+ V+G+ + + +D L Q + P Sbjct: 7 RLDRFISLNSNLNRRDVRLAIAQKRILVNGKHASTIHQVVSQFCHITFDNQTL-QANAPV 65 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y MLNKP G V +T D HPTV+ L + + +H GRLD ++TGL+L+T++G WS + Sbjct: 66 YIMLNKPAGRVSATKDSTHPTVVGCLPQQLQANIHIVGRLDFNSTGLMLLTNNGAWSRHL 125 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQ----FAKGVQLHNEKDLTKPAVLEVITPTQVRLT 177 TSP + K Y V LE + DD Q FA G+ E T+PA LE +T T+ R+T Sbjct: 126 TSPENKVNKIYEVELERTINDDEWPQYISAFASGMYFAFEDLTTQPAKLERLTATRARVT 185 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 + EGRYHQ+KRMF N V+ LHR ++G + LD L PGE+R L ++EI Sbjct: 186 LVEGRYHQIKRMFGRFRNKVIALHRTQLGALPLDPALQPGEHRLLNDDEI 235 >UniRef50_C7H4Z6 Pseudouridine synthase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H4Z6_9FIRM Length = 235 Score = 167 bits (424), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 92/233 (39%), Positives = 140/233 (60%), Gaps = 5/233 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDK++A+ +R+ A + RVTV+G + + +L VA DG PLA + Sbjct: 1 MRLDKYLAETAQCTRSEAKTLLNRGRVTVNGAVCKKGDTQLREGDSVAVDGAPLAYRQFV 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWSH 119 Y MLNKP+G V ++ D TV+ + + + L GRLD +TG VL+TDDG ++H Sbjct: 61 -YLMLNKPEGVVSASTDKRDTTVVDLIGDAYPRRELFPVGRLDKTSTGFVLLTDDGGFAH 119 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP--TQVRLT 177 I +P+ H KTY V +++P+ ++ FA+GV L + L+ PA +E +TP V++ Sbjct: 120 EILAPKRHVSKTYTVVIDTPLTEEMRRGFAEGVTLADGTALS-PAEVEALTPDGLTVKVR 178 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + +G YHQ+KRMF G V LHR+ IGG+ LD LAPG++R L+ EE+ ++ Sbjct: 179 LRQGVYHQIKRMFGVYGAGVNALHRDAIGGLALDPALAPGQWRELSAEEVTAI 231 >UniRef50_C8P302 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P302_ERYRH Length = 229 Score = 166 bits (421), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 94/227 (41%), Positives = 128/227 (56%), Gaps = 3/227 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF+A +R ++ VTV+ ++VR+A L E D + Sbjct: 1 MRLDKFLAHNGFGTRKDVKILVKKGMVTVNHDVVRDAGMVLNLEKDEVFVKGESVSYQKD 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 YFM+NKP GY+C + +P+VL + E L GRLD DT GL+L+T+DGQ+SHR Sbjct: 61 IYFMMNKPAGYICEHNPEMYPSVLELI-ESYHRDLVFVGRLDADTEGLLLITNDGQFSHR 119 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 + + + K Y V L+ P E+ KG+ L +E L KPA +EV+ + LTI E Sbjct: 120 VAHSKSNVHKQYYVELDKPFDLRFCEELEKGMMLGDE--LLKPAQVEVVGERAIHLTIGE 177 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 G+YHQVKRM A N V L R +IG + LD+ L PG YR L+EEEI Sbjct: 178 GKYHQVKRMMHACDNEVTYLKRIKIGALELDSSLQPGAYRDLSEEEI 224 >UniRef50_C0EB54 Pseudouridine synthase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EB54_9CLOT Length = 248 Score = 166 bits (420), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 98/224 (43%), Positives = 135/224 (60%), Gaps = 9/224 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLA-QQH 58 +R+DKF++ Q +R+ A +R RV V+G V+ A K+ PE D + DG Q+H Sbjct: 3 IRIDKFLSTQAIATRSQAKEMLRAGRVLVNGTPVKAADLKVDPEGDEIRVDGRVYGYQEH 62 Query: 59 GPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQW 117 Y MLNKPQG V +TDD H TVL + + + L AGRLD DT G VL+TDDG++ Sbjct: 63 --LYLMLNKPQGVVSATDDKVHRTVLDLVPPELRRRGLFPAGRLDRDTVGFVLITDDGEF 120 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ---V 174 +H I SPRHH KTY L+ P+ ++ A+GV L + +PA L V+ + + Sbjct: 121 AHNILSPRHHVPKTYEAGLDGPIGENELSVLAQGVVLGDGTK-CRPAELTVLQSGERPLI 179 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGE 218 ++ I EGRYHQ+KRMFAAVG V+ L R +IGG+ LD L G+ Sbjct: 180 QIVIVEGRYHQIKRMFAAVGRRVLTLKRTKIGGLALDPSLKEGD 223 >UniRef50_A9KNY1 Pseudouridine synthase n=3 Tax=Firmicutes RepID=A9KNY1_CLOPH Length = 240 Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 88/230 (38%), Positives = 131/230 (56%), Gaps = 1/230 (0%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RLDK++A +R + IR RV V+G + K+ HD + + Sbjct: 8 LRLDKYLADLSVGTRTEVKQMIRKGRVMVNGNTETSPETKVDSNHDKIFVDSRELSYVTL 67 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 YFMLNKP G V +++D TV+ +DE L GRLD DT GL+++T+DG +H+ Sbjct: 68 EYFMLNKPAGVVSASNDKKQTTVVDLIDEAKRKDLFPVGRLDKDTEGLLIITNDGDLAHQ 127 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 + SP+ H +K Y L P+ + E FA G+++ +E+ PA LE I+ + +TI E Sbjct: 128 LLSPKKHVDKVYFAKLRDPLKKEDEEAFAAGLKI-DEEFTALPAKLERISEQEAYVTIRE 186 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G++HQ+KRMF A N V+ L R +G + LD L+ GEYR LTEEEI ++ Sbjct: 187 GKFHQIKRMFEATRNEVIYLKRISMGSLVLDESLSLGEYRELTEEEIEAL 236 >UniRef50_A2RP35 Pseudouridine synthase n=172 Tax=Firmicutes RepID=A2RP35_LACLM Length = 328 Score = 163 bits (412), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 98/242 (40%), Positives = 140/242 (57%), Gaps = 14/242 (5%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKL-LPEHDVAYDGNPLAQQHG 59 MRLDKF+A+ SR+ ++ RVTV GEI R+ F++ VA+DG L Q Sbjct: 87 MRLDKFLAESGLGSRSEVKVLLKKGRVTVAGEIQRDGRFQVDKNSRQVAFDGQILDYQE- 145 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWS 118 Y++LNKPQG V +T D TV+ L E K + GRLD +T GL+++T+DG Sbjct: 146 YYYYLLNKPQGVVSATKDNVFKTVVQLLSEKDFRKDIFPVGRLDKNTEGLLILTNDGALG 205 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP------- 171 H +T P+ H EK Y ++ V D+ +FA+G+ L N + +P L V Sbjct: 206 HDLTQPKKHVEKEYFARIDGKVTDEIINKFAEGLTLKNGEK-ARPGELFVEKTYKGDSQS 264 Query: 172 ---TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 +++R+ I EG++HQVKRMF AV +V+ L R R+G + LD+DLA G YRPLT EEI Sbjct: 265 GWVSEIRVIIHEGKFHQVKRMFEAVEMYVLYLKRIRMGNLALDSDLALGAYRPLTIEEIE 324 Query: 229 SV 230 ++ Sbjct: 325 NL 326 >UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9KC52_THENN Length = 240 Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 92/230 (40%), Positives = 134/230 (58%), Gaps = 4/230 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLD++++ + +R I+ RVTV+ V + A+KL + V DG + Sbjct: 1 MRLDRYLSNRGIGTRKEVRALIKHGRVTVNDRTVLDPAYKLSDKDVVKVDGKVIDLPEKV 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y + KP GYV ST DP T++ FL P + GRLD D GL+L+T+DG+++HR Sbjct: 61 -YILFYKPAGYVTSTRDPHSETIMEFL--PDIKGIFPVGRLDKDAEGLLLVTNDGEFAHR 117 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 + SPR EK Y+V +E + +D E+ +GV L + K +E I+ V++ I+E Sbjct: 118 VISPRWKVEKEYVVKVEGEITEDKLEKLRRGVSLRD-GFFAKAKHVEKISNDTVKIVITE 176 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G+YHQVKRM AAVG + L R RIGG+ L ++ PGEYR L+EEE+ V Sbjct: 177 GKYHQVKRMMAAVGLKTIHLKRVRIGGLRLPQEMKPGEYRFLSEEEVRQV 226 >UniRef50_A8SIK9 Pseudouridine synthase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SIK9_9FIRM Length = 235 Score = 160 bits (406), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 83/232 (35%), Positives = 135/232 (58%), Gaps = 3/232 (1%) Query: 1 MRLDKFIAQQLGV-SRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG 59 +R+D+F+ +G+ SR+ + ++ RV ++G+ +N+ ++ E D + + Sbjct: 3 IRIDRFLCH-MGIGSRSEIKKYLKTCRVKLNGKFEKNSNTQVDIEKDEILFDDEIVIYKE 61 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVA-WKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y MLNKP+ ++ +T D PTVL L+ P + +L GRLDIDTTG +++T+DG++S Sbjct: 62 FTYLMLNKPKDFISATFDTKLPTVLDLLEFPYSNMELFPVGRLDIDTTGFLILTNDGKFS 121 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 + +T+P+ K Y VTL + + E+ G+ E T+ A +E I+ ++ LTI Sbjct: 122 YNVTNPKKKVNKKYFVTLRDEIISEQIEKLENGIYFEKEDFTTENAKVEKISEKEINLTI 181 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 SEG++HQVKRM V N VVEL + IG + LD L GEYR +T E+ + Sbjct: 182 SEGKFHQVKRMLEYVENEVVELKKVCIGNLNLDDSLKLGEYREITNSELEEI 233 >UniRef50_Q15Q67 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q15Q67_PSEA6 Length = 241 Score = 159 bits (403), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 93/224 (41%), Positives = 132/224 (58%), Gaps = 10/224 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RLD+ ++ SR A ++G RVTV GE ++ A K+ P V DG L G Sbjct: 15 RLDQLLSNLGYCSRKEARYLLKGKRVTVKGEFAKSPALKVDPA-TVRVDGEALDAPDG-I 72 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAW-----KLHAAGRLDIDTTGLVLMTDDGQ 116 MLNKP GYVCS D+ + + L P W K+ + GRLD DT+GL+L+TDD + Sbjct: 73 LVMLNKPLGYVCSHDNNEGMRIYDLL--PERWEFRNPKIVSVGRLDKDTSGLILVTDDTK 130 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRL 176 H++TSP+HH +K Y V+++ P+ D + FAKGV L + PA +E+++ + Sbjct: 131 LVHQLTSPKHHVDKVYQVSVDCPLQSDIIDSFAKGVVLGEGAEQCLPAKIEIVSENVANV 190 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYR 220 T++EG+YHQV+RMFAA G HV LHR + G L DLA GE++ Sbjct: 191 TLNEGKYHQVRRMFAACGYHVEALHRSQFGQYRLQ-DLAQGEWQ 233 >UniRef50_O66829 Uncharacterized RNA pseudouridine synthase aq_554 n=1 Tax=Aquifex aeolicus RepID=Y554_AQUAE Length = 238 Score = 159 bits (402), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 89/232 (38%), Positives = 144/232 (62%), Gaps = 6/232 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDK++++ L +SR A IR RV V G++V+ A +++ +V +G + + Sbjct: 1 MRLDKYLSKSLHISRKEAKELIREGRVKVSGKVVKQAEYRVKEGEEVEVEGKSVKPKKNV 60 Query: 61 RYFMLNKPQGYVCSTD-DPDHPTVLYFLDEPV-AWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y ML KP+GY+ +T+ D +P+ L + E + KL +AGRLD+D GL+L+TDDG+ + Sbjct: 61 -YLMLYKPKGYLSTTEEDKKYPSFLELIREHFPSRKLFSAGRLDVDAEGLLLITDDGELA 119 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 HR+T P+ EK Y+V L+ + D E+ K ++ E+ + E ++ V+ + Sbjct: 120 HRLTHPKWKVEKEYIVRLDRDIGD---EELKKLYEVKLEEKPVQLVKAEKLSGDTVKAIL 176 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +EGR+H VKR+F AVG++VV L R R+G + LD ++ PGE+R LTEEE+ + Sbjct: 177 TEGRHHVVKRLFKAVGHNVVYLKRTRVGNLRLDENMEPGEWRELTEEEVKEL 228 >UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae RepID=A5IKF7_THEP1 Length = 239 Score = 158 bits (399), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 87/230 (37%), Positives = 129/230 (56%), Gaps = 4/230 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLD++++ +R + I+ RVTV+G +V + + E+DV H Sbjct: 1 MRLDRYLSNSGVGTRKEVKKLIKQGRVTVNGRVVLDPGHSV-SENDVVVLDGETVNFHRK 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y + +KP GYV ST DP T++ FL P + GRLD D GL+++T DG ++HR Sbjct: 60 VYILFHKPSGYVTSTKDPHSETIMEFL--PPLKGIFPVGRLDKDAEGLLIITSDGDFAHR 117 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 + SP+ EK Y+V +E V +D E+ GV L + K +E ++ +++ I+E Sbjct: 118 VISPKWSVEKEYIVKVEGEVTEDKIEKLKNGVTLRD-GFFAKAKCVEKLSNDTLKIVITE 176 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G+YHQ+KRM AVG V L R RIG + L D+ PGEYR L+EEE+ V Sbjct: 177 GKYHQIKRMTVAVGLRTVHLKRTRIGRLVLPEDMKPGEYRFLSEEEVKKV 226 >UniRef50_C7REA2 Pseudouridine synthase n=4 Tax=Anaerococcus RepID=C7REA2_ANAPD Length = 232 Score = 156 bits (394), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 84/229 (36%), Positives = 133/229 (58%), Gaps = 2/229 (0%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDK I +R + + + V+GE+V++ A ++ PE D Y Sbjct: 1 MRLDKMIGNSGLDTRKNIKKNAKKGAILVNGEVVKDTATQVDPEVDEVYYMGHFVDYFEN 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPV-AWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y M+NKP G++ +T+D D PTV+ LD+ L AGRLD DTTGL+L++ DG++ H Sbjct: 61 IYVMMNKPAGFLSATEDKD-PTVIDLLDDFYKVIDLSIAGRLDKDTTGLLLLSTDGKFIH 119 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 ++TSP + EKTYLV + + + F +GV + + + A LE++ + + ++ Sbjct: 120 KVTSPNSNIEKTYLVECRDKIDESLIDLFKEGVYIKEDDYTARSAKLEILEEKKAIVKVT 179 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 EG++H VKR+F+ N V +L R IG ++LD LA GEYR L+++EI+ Sbjct: 180 EGKFHLVKRLFSNCCNKVEKLKRIAIGDLSLDEHLAEGEYRELSDDEIS 228 >UniRef50_C5CED2 Pseudouridine synthase n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CED2_KOSOT Length = 235 Score = 155 bits (392), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 84/230 (36%), Positives = 135/230 (58%), Gaps = 3/230 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLD F+++ G+SR + + I+ RV V+G +RN FK+ + DGN + +G Sbjct: 1 MRLDTFLSRFGGISRRQSRKLIKTGRVEVNGAKIRNPEFKIPENSSIFLDGNRIVP-YGK 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +NKP GYVCS + +V ++E + KL AGRLD ++ GL+L+++DG + H Sbjct: 60 LYIAMNKPVGYVCSKSRTEGLSVYDLINEVFSSKLSIAGRLDKNSRGLLLLSNDGNFVHE 119 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 I SPR EK Y+V +E + + + + V + + + + ++ I + ++E Sbjct: 120 IISPRKKIEKEYIVKVEEKILPEQLQILLQHVDI-GKGEYARAESVQFIDIVTFSIVLTE 178 Query: 181 GRYHQVKRMF-AAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 G+YH+++RM +A+ N+VV+L R RIGG L DL GE+R LTEEEI + Sbjct: 179 GKYHEIRRMVKSALKNNVVDLKRIRIGGYHLPGDLHEGEWRILTEEEIKA 228 >UniRef50_A8SYF2 Pseudouridine synthase n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SYF2_9FIRM Length = 239 Score = 155 bits (391), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 90/237 (37%), Positives = 136/237 (57%), Gaps = 9/237 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 MRLDKF+ + SR+ + I+ V+V+G ++ K+ + D + Y+G L Sbjct: 1 MRLDKFLVEMNIGSRSQVKQYIKKGMVSVNGTNAASSDMKINEDTDTIKYNGKQLCYSK- 59 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 RYF+LNKP G V +T D H TV+ L+ L GRLD+DT GL+++T+DG+ +H Sbjct: 60 YRYFLLNKPAGCVSATKDNVHQTVIDLLNGENTKDLFPVGRLDLDTEGLLIITNDGRLAH 119 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT------PTQ 173 + SP HH KTY ++ V D T F +G+ + ++ T PA L++I ++ Sbjct: 120 HLLSPAHHIAKTYYADIDGYVDDQTISLFKQGIDIGDDTP-TLPASLKIIEADRSTGSSR 178 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + LTI+EGR+HQVKRMF AV V L R +G + + DL G YR LT EE++++ Sbjct: 179 IELTITEGRFHQVKRMFQAVNMSVTFLKRISMGNLHIADDLPTGSYRELTPEEVSAL 235 >UniRef50_Q1LJQ9 Pseudouridine synthase n=3 Tax=Burkholderiales RepID=Q1LJQ9_RALME Length = 238 Score = 154 bits (390), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 97/233 (41%), Positives = 127/233 (54%), Gaps = 9/233 (3%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD---VAYDGNP-LAQQH 58 LD+ + Q +R G + V V+GE+ + + E D + DG LA Sbjct: 5 LDRILQSQGFGTRRYCGDLVAAGLVEVNGELCEDPGARF--EVDGLRLMVDGEEWLACTK 62 Query: 59 GPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQW 117 Y MLNKP GY CS HP+V L P+ + + A GRLD DTTGL+L+TDDGQ+ Sbjct: 63 A--YVMLNKPTGYECSQRPRHHPSVYNLLPVPLRQREVQAVGRLDHDTTGLLLLTDDGQF 120 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT 177 H TSP+ K Y VT PV + E GV+L +E E +RLT Sbjct: 121 IHAQTSPKKQVPKIYEVTTFDPVTPEQVEALRTGVKLDDEPAPIAADACEATGERSLRLT 180 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + +G+YHQVKRM AAVGNHV LHR IGG+ LD L PGE+R LT E++A++ Sbjct: 181 LLQGKYHQVKRMVAAVGNHVTALHRSAIGGLVLDPALGPGEWRWLTPEDLAAL 233 >UniRef50_UPI0001C37AA4 16s pseudouridylate synthase n=2 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37AA4 Length = 255 Score = 154 bits (389), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 94/230 (40%), Positives = 129/230 (56%), Gaps = 4/230 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKL-LPEHDVAYDGNPLAQQHG 59 +RLDKFI+++ +R+ VTV+G V+ + K+ DV GN ++ + Sbjct: 4 IRLDKFISERTEYTRSQIKSLCAKGSVTVNGSPVKRSDTKIDTGADDVTVCGNAISSERF 63 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWS 118 RY +LNKP+GYV STDD D TV+ + + K L AGRLD D+TG +L+TDDG + Sbjct: 64 -RYILLNKPKGYVSSTDDKDGETVIKLVPPEMRSKGLFPAGRLDKDSTGALLITDDGALA 122 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT- 177 HRI SP +H K Y L P + E+FAKG+ L N + + V + + Sbjct: 123 HRICSPNNHISKIYAAELSRPFEQEYVEKFAKGIVLANGEACSPCKVQKAENADNLAFVE 182 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 + EG YHQVKRMFAAVGNHV L R IGG+ L DL G+ L ++I Sbjct: 183 LHEGMYHQVKRMFAAVGNHVENLKRISIGGLILPKDLPLGKCMYLLPKDI 232 >UniRef50_Q6F9V5 Pseudouridine synthase n=17 Tax=Acinetobacter RepID=Q6F9V5_ACIAD Length = 239 Score = 154 bits (388), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 90/231 (38%), Positives = 131/231 (56%), Gaps = 9/231 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVA-YDGNPLAQQHG 59 M L+K + Q SR + I+ V++ EI ++ +++ HD+ ++ Q + Sbjct: 5 MLLEKMLQSQGFGSRKYCQQLIKNGAVSIQDEIQKDLKYRI---HDLTDFNFQVFDQNYV 61 Query: 60 PR---YFMLNKPQGYVCSTDDPDHPTVLYFL-DEPVAWKLHAAGRLDIDTTGLVLMTDDG 115 R Y +LNKP+G+ CS H +V L D + + A GRLD DTTGL+L+TDDG Sbjct: 62 YREKVYIILNKPKGFECSHQPHHHQSVFSLLPDLLIQRNIAAVGRLDQDTTGLLLLTDDG 121 Query: 116 QWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVR 175 Q+ H +T P+ H K Y V P+ D Q +GV+LHNEK + + ++ TQ+ Sbjct: 122 QYLHTLTHPKKHVPKVYHVATIDPITVDQMHQLEQGVELHNEKGVFAATNVTLLNETQLS 181 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 +TI +G YHQVKRM AAVGN V LHR +IG + L +LA GE+ LTE + Sbjct: 182 MTIHQGVYHQVKRMIAAVGNKVTALHRHKIGQLEL-PNLAEGEWMYLTETQ 231 >UniRef50_Q49YI4 Pseudouridine synthase n=2 Tax=Staphylococcus RepID=Q49YI4_STAS1 Length = 232 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 88/229 (38%), Positives = 134/229 (58%), Gaps = 5/229 (2%) Query: 1 MRLDKFIAQQLGV-SRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG 59 MRLDKF++ +GV +R + ++ +VT+D ++ + ++ PE ++ + Sbjct: 1 MRLDKFLSN-MGVGTRTEVKQRLKKKQVTIDDKVETSPKKQINPELEIVKVNDQKIDFVN 59 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y MLNKP+ Y+ +T D H TVL +++ L GRLD DT GL+L+T+DGQ++H Sbjct: 60 KVYLMLNKPKDYISATTDEQHKTVLDLIEDYRYLDLFPVGRLDKDTEGLLLITNDGQFNH 119 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL-EVITPTQVRLTI 178 + SP H KTY V + + + F G++L+ + L KPA L + + +TI Sbjct: 120 ELMSPGKHVAKTYEVISQKNITKNDINAFKVGIELN--EGLAKPAKLVQGDELNKSFVTI 177 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 EGRYHQVKRMF A+ N V+ L R RIG + LD+ LA GEYR LT+++ Sbjct: 178 YEGRYHQVKRMFHAIDNEVLALKRIRIGDLQLDSTLASGEYRHLTQQDF 226 >UniRef50_Q6G8H4 Pseudouridine synthase n=61 Tax=Firmicutes RepID=Q6G8H4_STAAS Length = 231 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 85/228 (37%), Positives = 131/228 (57%), Gaps = 4/228 (1%) Query: 1 MRLDKFIAQQLGV-SRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG 59 MR+DKF+A +GV +R + ++ V V+ +++++ + PE+D L + Sbjct: 1 MRIDKFLAN-MGVGTRNEVKQLLKKGLVNVNEQVIKSPKTHIEPENDKITVRGELIEYIE 59 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y MLNKP+ Y+ +T+D TV+ + E + GRLD DT GL+L+T+DG ++H Sbjct: 60 NVYIMLNKPKDYISATEDHHSKTVIDLIPEYQHLNIFTVGRLDKDTEGLLLITNDGDFNH 119 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 + SP H K Y V +P+ +D + F +GV L + K KPA+L I +TI Sbjct: 120 ELMSPNKHVSKKYEVISANPITEDDIQAFKEGVTLSDGK--VKPAILTYIDNQTSHVTIY 177 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 EG+YHQVKRMF ++ N V+ L R +I + LD++L GEYR LTE + Sbjct: 178 EGKYHQVKRMFHSIQNEVLHLRRIKIADLELDSNLDSGEYRLLTENDF 225 >UniRef50_C2KV26 Pseudouridylate synthase n=1 Tax=Oribacterium sinus F0268 RepID=C2KV26_9FIRM Length = 239 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 83/237 (35%), Positives = 140/237 (59%), Gaps = 9/237 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 MRLDK+++ SR++ REIR V ++GEIV++ + ++ P ++ Y P+ + Sbjct: 1 MRLDKYLSDMGVESRSVLKREIRKGLVKINGEIVKDPSMEVQPGNSEIVYKDEPIHYEEF 60 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y+M+NKP G + ST+D TVL + L GRLD D+ GL+L+ +DG +H Sbjct: 61 S-YYMMNKPVGVLSSTEDRKQKTVLDLFSDKHRKDLFPVGRLDKDSEGLLLIMNDGALAH 119 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ----VR 175 ++ SP+ H EK YLV + ++++ ++ +G+Q ++ + PA ++ T+ V Sbjct: 120 KLLSPKMHIEKKYLVEIPGKISEEELDRLRQGIQ-YDTDLIAMPAKARCLSSTEEGSRVE 178 Query: 176 LTISEGRYHQVKRMFAAVGNH--VVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + I EG++HQ+K+MF A+ V +L R +G + LD LAPGEYR L+EEE+ ++ Sbjct: 179 VIIMEGKFHQIKKMFLALSTDYVVTKLQRLSMGPLHLDPALAPGEYRKLSEEEVQAL 235 >UniRef50_B7J5G3 Pseudouridine synthase n=3 Tax=Acidithiobacillus RepID=B7J5G3_ACIF2 Length = 251 Score = 153 bits (387), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 93/231 (40%), Positives = 133/231 (57%), Gaps = 13/231 (5%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+D +++ SR+ +R RV V GE++R A+ K+ +V D P+ H Sbjct: 21 RMDHLLSRLGYCSRSEVRDLLREGRVRVAGELLRKASAKV-NAAEVWVDEEPIDHPHA-F 78 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-----LHAAGRLDIDTTGLVLMTDDGQ 116 Y + +KP G VC+ DDP + D P+ W+ L + GRLD +T+G++L+TDDG Sbjct: 79 YLLYHKPLGKVCAHDDPR----AIYQDFPLRWRYRRPALSSVGRLDRETSGVLLLTDDGD 134 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKG-VQLHNEKDLTKPAVLEVITPTQVR 175 W H TSPR + Y VTL+ P+ D A+ A G + L E +PA L +T +VR Sbjct: 135 WLHHWTSPRRAIPRVYRVTLQEPLRSDAADILAAGTLMLDGEDTPCRPAALHCLTEREVR 194 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 LT++EGRYH+V+RMFAA+ N V+ LHRE G LD DL G++R LT E Sbjct: 195 LTLTEGRYHEVRRMFAALDNLVLTLHREAYGPFLLD-DLPAGQWRELTVAE 244 >UniRef50_B8ET33 Pseudouridine synthase n=29 Tax=Proteobacteria RepID=B8ET33_METSB Length = 255 Score = 152 bits (384), Expect = 9e-36, Method: Compositional matrix adjust. Identities = 94/241 (39%), Positives = 130/241 (53%), Gaps = 14/241 (5%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKL--LPEHDVAYDGNPLAQQH 58 +RLD+ +A +R R+ +DG +R+ A ++ PE N A Sbjct: 11 LRLDRLLANLGYGTRTQMQAMAHAGRIKLDGAALRDPALRVAATPEFCARLSINGEALDP 70 Query: 59 GPRYFM-LNKPQGYVCSTDDPDHPTVL------YFLDEPVAWKLHAAGRLDIDTTGLVLM 111 P + LNKP+G CS + P V + L EP L GRLD DT+GL+L+ Sbjct: 71 PPGMVIALNKPRGVTCSRKEAG-PLVFDLLPPRFRLREPA---LSTVGRLDKDTSGLLLI 126 Query: 112 TDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKG-VQLHNEKDLTKPAVLEVIT 170 TDDG HR+ SP+H+ K Y L P+ D AE FA G + L +E PAVL V++ Sbjct: 127 TDDGALLHRLISPKHNIAKRYCAKLARPLRGDEAEIFASGEMMLDDEAKPLLPAVLRVLS 186 Query: 171 PTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 PT+ ++++EGRYHQ++RMFAA GNHV+ELHR IG L LAPG++ L E + Sbjct: 187 PTEAEVSVTEGRYHQIRRMFAATGNHVLELHRMSIGDFALPLTLAPGDFLLLRASEAEAA 246 Query: 231 V 231 V Sbjct: 247 V 247 >UniRef50_B2TQQ1 Pseudouridine synthase n=8 Tax=Clostridium RepID=B2TQQ1_CLOBB Length = 264 Score = 151 bits (382), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 93/254 (36%), Positives = 134/254 (52%), Gaps = 26/254 (10%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 MRLDKF+A+ R I I+ V V+GEI+ + + + DV Y + G Sbjct: 1 MRLDKFLAESAVGRRKIVRTYIKDGMVKVNGEIITEPSIDINEKLDDVEYLEKKVVHT-G 59 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y+M NKP G + +T D H TV + DE + H GRLD DT GL+L+T+DG++ H Sbjct: 60 KVYYMFNKPSGCITATKDNIHRTVFDYFDEDMNGVFHV-GRLDKDTEGLLLLTNDGEFEH 118 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEV----------- 168 ++ P H EKTY + D+ +Q +GV + + + LTKPA +++ Sbjct: 119 KVMHPEKHVEKTYFFWALGSLDDEDKKQLQEGVFIGSNEALTKPAKIDIHKSGSYIEFKE 178 Query: 169 ---ITPTQVR---------LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAP 216 I + + LTISEG+ HQVKRM AVG +V+ L R IGG+ LD L Sbjct: 179 EIPINSLKNKDHQPVVSGYLTISEGQKHQVKRMLKAVGCYVIYLKRISIGGLKLDESLKM 238 Query: 217 GEYRPLTEEEIASV 230 G+YR LT++EI + Sbjct: 239 GDYRDLTKKEIKRI 252 >UniRef50_A4J9G8 Pseudouridine synthase n=47 Tax=Bacteria RepID=A4J9G8_DESRM Length = 249 Score = 150 bits (380), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 87/233 (37%), Positives = 135/233 (57%), Gaps = 7/233 (3%) Query: 1 MRLDKFIAQQ-LGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG 59 +RLD+ + LG + I + I+ +V V+GE+ + + P+ D + + Sbjct: 7 LRLDRLLNHMGLGTRKEIK-KLIKAKQVMVNGELAMDPGLHIFPQRDHIEVQGEVIEYRE 65 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPV-AWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y MLNKPQ + +T+D V+ LD ++ GRLD DT GL+L+T++G+ + Sbjct: 66 YIYLMLNKPQDVLSATEDASDKVVIDLLDPTYHSFNPFPVGRLDKDTEGLLLLTNNGKLA 125 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP---TQVR 175 H++ SP+ H KTY ++ V ++ FA+GV+L ++ T P L++I +++ Sbjct: 126 HQLLSPKKHVPKTYYALVQGLVTEEDVAAFARGVEL-DDGYRTLPGQLKIIRSAPQSEIE 184 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 LTI EG+YHQVKRMF AVG V+ L R +G + LD +L PGEYR LT+EEIA Sbjct: 185 LTIYEGKYHQVKRMFEAVGKRVIYLKRLSMGPLVLDNNLKPGEYRELTDEEIA 237 >UniRef50_A0Z9D8 Pseudouridine synthase, Rsu n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z9D8_9GAMM Length = 229 Score = 150 bits (380), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 84/205 (40%), Positives = 115/205 (56%), Gaps = 2/205 (0%) Query: 26 RVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLY 85 R+ +DG + + + P V D L Q PRY MLNKP G V +T D H TVL Sbjct: 9 RILLDGLAAESISQVVGPFTHVVLDQRVL-QAEQPRYIMLNKPPGMVSATCDEQHSTVLD 67 Query: 86 FLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTA 145 + P A LH GRLD ++TGL+L+T+DG+WS ++SP+ KTY V LE P D Sbjct: 68 LVSAPNAKSLHIVGRLDFNSTGLLLLTNDGRWSRGVSSPQKGVVKTYRVQLEQPFRSDYR 127 Query: 146 EQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERI 205 E FA G+ E T+PA + ++ ++ EGRYHQ+KRMF N V+ LHR I Sbjct: 128 EAFAAGLYFAFENITTRPAEIRRLSDLSRGRSV-EGRYHQIKRMFGYFNNRVLNLHRLSI 186 Query: 206 GGITLDADLAPGEYRPLTEEEIASV 230 G ++LD L G +R LT E+ ++ Sbjct: 187 GALSLDPKLHQGAWRELTLSELNAL 211 >UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=B2A4P2_NATTJ Length = 238 Score = 150 bits (379), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 84/234 (35%), Positives = 140/234 (59%), Gaps = 9/234 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 MRL KF+++ SR + I+ RVTV+G+++ K+ P+ D V DG P+ Q+ Sbjct: 1 MRLQKFMSRAGIASRRKSEELIQQGRVTVNGQVITRLGTKINPDTDTVKVDGEPITQEES 60 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y MLNKP+ Y+ S DDP TV+ + V +++ GRLD D+ GLVL+T+DG+ + Sbjct: 61 NVYIMLNKPKDYITSKDDPQGRKTVMDLI--QVKERVYPVGRLDYDSRGLVLLTNDGELA 118 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ--VRL 176 +R+ P+++ KTY+V ++ D + G+ L E+ L K +E++ +++ Sbjct: 119 NRLMHPKYNIPKTYMVKVDKLPLQDKLDNLVNGIYL--EEGLCKADHVEILDTKNNILKI 176 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +SEGR Q++RM A++G V +L R+ +G +TL DL+ G YR LT++EI ++ Sbjct: 177 ILSEGRKRQIRRMLASLGIEVKDLKRDSLGTLTL-KDLSEGNYRKLTKDEIDNI 229 >UniRef50_D2MQD6 Pseudouridylate synthase n=1 Tax=Bulleidia extructa W1219 RepID=D2MQD6_9FIRM Length = 231 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 83/230 (36%), Positives = 127/230 (55%), Gaps = 4/230 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLD+ +A SR ++ RV+V+G+I ++ + P DV + + Q Sbjct: 1 MRLDRVLANASVGSRTQVKNMVKNGRVSVNGKIALASSMMVDPNQDVIRIDDEILQYAKY 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 +Y ML KP GY+ +T+ PTVL + P L GRLD DT GL+LMT+DG+ +H Sbjct: 61 QYLMLYKPAGYISATEGRYDPTVLELV--PNYKGLFPCGRLDKDTEGLLLMTNDGRLAHN 118 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 + SP+ H EK Y V + P++ + +G++ N K A L+++ Q + + E Sbjct: 119 LLSPKKHVEKEYYVEHQLPLSQEDVLCIERGIRYKNIT--YKGAKLKILDDLQCTIILQE 176 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G+YH++K +F A+ N V L R R+ + LD L GEYRPL+EEEI + Sbjct: 177 GKYHEIKNIFLAIDNKVTYLKRIRMKNLILDETLKKGEYRPLSEEEIGDL 226 >UniRef50_Q042N1 Pseudouridine synthase n=3 Tax=Lactobacillus gasseri RepID=Q042N1_LACGA Length = 245 Score = 150 bits (378), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 90/234 (38%), Positives = 134/234 (57%), Gaps = 9/234 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR+DK++A SR I+ VTV+GE+V ++ VA DGN +A Q Sbjct: 13 MRIDKYLANMNVGSRKEVHSLIKKKVVTVNGELVTIPKQQVKETDLVAVDGNKIAYQQ-Y 71 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWSH 119 YF+LNKP+G + +T+D TV+ L ++ + GRLD DTTGL+L+T+DG +H Sbjct: 72 HYFLLNKPKGVISATEDRSQQTVISLLKTKDRYQGIAPVGRLDKDTTGLLLLTNDGALAH 131 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP------TQ 173 + +P H K Y + +TA++FA+G+ L + L KPA L+++ +Q Sbjct: 132 ELLAPNKHVAKVYRAKIAGVPDPETAKKFAQGLILGDGTKL-KPAKLKILKQDQDNNLSQ 190 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 + + I EG+YHQ+KRMF AVG V+EL R +G + L ADL GEY+ + EI Sbjct: 191 IEIQIQEGKYHQIKRMFGAVGMKVLELDRVSMGKLHLPADLKRGEYKEIDLAEI 244 >UniRef50_C7NBL1 Pseudouridine synthase n=3 Tax=Leptotrichia RepID=C7NBL1_LEPBD Length = 252 Score = 149 bits (376), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 88/248 (35%), Positives = 134/248 (54%), Gaps = 22/248 (8%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF+A +R ++ +V+V+ V++ + E D+ N + Sbjct: 1 MRLDKFLANSGIGTRKEVKEILKNKKVSVNNVFVKDGKIHVDEEKDIVKYENKIINYKPF 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFL-DEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y M+NKP G + +T+D H TV+ L DE + + GRLDIDT GL+L+T+DG SH Sbjct: 61 VYIMMNKPAGVISATEDSHHKTVIDLLNDEYRTYDIFPVGRLDIDTEGLILLTNDGILSH 120 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ------ 173 + SP+ H +K Y V + +++D + G++L E +TK A +E+I Sbjct: 121 NLLSPKKHVDKKYYVKITKSLSEDDIKTLENGIKLE-ENFITKNAKVEIICNNSEKESED 179 Query: 174 --------------VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEY 219 V +TISEG++HQVKRMF AVGN V+ L R ++G + LD +L G Y Sbjct: 180 FDFGENENNKNENSVYITISEGKFHQVKRMFKAVGNEVLYLKRVKMGNLLLDENLELGGY 239 Query: 220 RPLTEEEI 227 R LT++E+ Sbjct: 240 RELTQKEL 247 >UniRef50_C5WHE9 Pseudouridine synthase n=3 Tax=Lactobacillales RepID=C5WHE9_STRDG Length = 245 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 134/238 (56%), Gaps = 11/238 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDV-AYDGNPLAQQHG 59 MRLDKF+ + SR+ ++ + V+ E+ + ++ DV Y G PL + Sbjct: 3 MRLDKFLVETGVGSRSQVKSLLKKKAILVNQEVETSPKVQINEHKDVVTYLGKPLTYE-A 61 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWS 118 Y++LNKP G++ +T D TV+ LDE K + GRLD DT GL+L+T++GQ + Sbjct: 62 FVYYILNKPAGFLSATKDRAQATVIDLLDETARQKDVFPVGRLDKDTRGLLLLTNNGQLA 121 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP------T 172 H + SP+ H K YL + + D + FAKG+ L + + L PA LEV+ Sbjct: 122 HDLLSPKKHVTKEYLAKVAGIMTDADKDDFAKGISLKDHQCL--PAKLEVLDKDLSQETC 179 Query: 173 QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 V +TI EG++HQVKRM AA G V+EL R +G + LD LA G++R LT +E+ S+ Sbjct: 180 VVSITIQEGKFHQVKRMVAACGKEVLELQRLSMGPLRLDPGLAEGDFRRLTSDELQSL 237 >UniRef50_Q6LQS3 Pseudouridine synthase n=1 Tax=Photobacterium profundum RepID=Q6LQS3_PHOPR Length = 240 Score = 149 bits (375), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 80/190 (42%), Positives = 109/190 (57%), Gaps = 1/190 (0%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RLD+FI+Q S + I R+ VDG + + K+ V DGN L Q + P Sbjct: 34 RLDRFISQNSTFSISDTRLLIAQKRILVDGHVAHSNQQKVTKFTYVELDGNCL-QDNNPV 92 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y +LNKP+G V +T D H TVL + +LH GRLD +TTGLVL+T+DG WS +I Sbjct: 93 YIVLNKPKGVVSATKDIKHSTVLDLIQHSQKNELHIVGRLDFNTTGLVLLTNDGAWSRKI 152 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEG 181 + P K Y VTL P++D+ F +G+ E TKPA LE+++ RL++ EG Sbjct: 153 SLPETKLAKVYEVTLSKPLSDEYITVFREGIYFGYEDITTKPACLEILSEYTARLSLVEG 212 Query: 182 RYHQVKRMFA 191 +YHQVKRMF Sbjct: 213 KYHQVKRMFG 222 >UniRef50_Q1J642 Pseudouridine synthase n=51 Tax=Streptococcus RepID=Q1J642_STRPF Length = 244 Score = 148 bits (374), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 89/238 (37%), Positives = 135/238 (56%), Gaps = 11/238 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 MRLDKF+ +R+ ++ + V+ ++ +A + D V Y G PL + Sbjct: 2 MRLDKFLVATGVGTRSQVKLLLKKKAIFVNQKVETSAKAHIDEYKDLVTYQGTPLVYESF 61 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWS 118 Y++LNKP GYV +T D TV+ LD+ K + GRLD DT GL+L+T++GQ + Sbjct: 62 V-YYLLNKPSGYVSATQDRQQATVMELLDDTARQKTVFPVGRLDKDTRGLLLLTNNGQLA 120 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP------T 172 H + SP+ H K YL + + + + FA+G+ L + + L PA LEV+ + Sbjct: 121 HDLLSPKKHVTKEYLAKVAGIMTEADKDYFARGISLKDHQCL--PAHLEVLASDLQQQTS 178 Query: 173 QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 V++TI EG++HQVKRM AA G V++L R +G + LD LA GE+R LT EE+ S+ Sbjct: 179 LVKITIQEGKFHQVKRMVAACGKEVLDLQRLSMGPLKLDPSLAEGEFRRLTPEELQSL 236 >UniRef50_C4FUC8 Pseudouridine synthase n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUC8_9FIRM Length = 243 Score = 147 bits (371), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 135/237 (56%), Gaps = 9/237 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++K++A SR + + VT++ ++ ++ P D G L Sbjct: 1 MRIEKYLADTGWGSRKDIKQLLAQKIVTINDQVCSKGGTQVTPGSDCVAVGGQLVPYQRY 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVA-WKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y++LNKP+G + +T+D H TV+ +L E L GRLDIDTTGL+L+T++GQ +H Sbjct: 61 HYYLLNKPEGILSATEDRHHQTVIDWLGEGYQHLDLFPVGRLDIDTTGLLLLTNNGQLAH 120 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT------PTQ 173 ++ SP+ +KTY T+ V F G+ L + L PA L V++ +Q Sbjct: 121 QLLSPKKKVDKTYTATIRGLVDQADIAAFEAGLDLGDFTSL--PAELTVLSQDVDQGTSQ 178 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +++ I EG++HQVKRMF AVG V+ LHR +G + L++DLA G++R LTE+E ++ Sbjct: 179 IQVIIQEGKFHQVKRMFQAVGKEVLSLHRLAMGPLRLESDLAHGQWRSLTEQEAQAL 235 >UniRef50_A5TW76 Pseudouridine synthase n=11 Tax=Fusobacterium RepID=A5TW76_FUSNP Length = 226 Score = 146 bits (369), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 87/229 (37%), Positives = 133/229 (58%), Gaps = 6/229 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDV-AYDGNPLAQQHG 59 MRLDKF+ + SR + I + +TV+G +A + D+ Y+G L + Sbjct: 1 MRLDKFLVECGIGSRKEVKKLISNDEITVNGFNDISAKDNIDENSDIIEYNGEKLEYKE- 59 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWS 118 RY+++NK GY+ +T+D TV+ L E V K L GRLD DT GL+L T+DG+ + Sbjct: 60 FRYYIMNKKAGYITATEDFKENTVMDLLPEWVIRKDLAPVGRLDKDTEGLLLFTNDGKLN 119 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 HR+ SP++H +K Y + +E+ + D + +GV + N +T+PA +E I+ ++ LTI Sbjct: 120 HRLLSPKNHIDKVYYIEIENNILDKDILKLEQGVDIGNY--ITQPAKVEKISDNKIYLTI 177 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 EG++HQVK+M AV N V L R G + LD DLA GE + + E+I Sbjct: 178 KEGKFHQVKKMLEAVNNKVCYLKRVSFGKLKLD-DLALGEVKEVNLEDI 225 >UniRef50_Q0F0K3 Pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F0K3_9PROT Length = 249 Score = 145 bits (367), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 94/237 (39%), Positives = 126/237 (53%), Gaps = 12/237 (5%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RLDK ++ +R I+ +TV GE + A K+ DV +G PL G Sbjct: 8 RLDKLLSNLGYGARKDVRHWIKAGWITVQGEAAESPAQKVFAS-DVLLEGEPLDHPDG-L 65 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAW-----KLHAAGRLDIDTTGLVLMTDDGQ 116 + +KP VCS + L + D P W GRLD DT+GL+++TDDGQ Sbjct: 66 TIIYHKPLDTVCSRKEGGR---LIYDDLPARWLDRKPPFSPVGRLDKDTSGLLIVTDDGQ 122 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKG-VQLHNEKDLTKPAVLEVITPTQVR 175 +H +TSP+ H KTY VTL P+ AE A G + L N+ PA L V +PTQ Sbjct: 123 LNHCLTSPKQHISKTYSVTLAEPLQGREAEIMAAGTLLLENDDRPCLPAELIVHSPTQAS 182 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITL-DADLAPGEYRPLTEEEIASVV 231 LT+ EGRYHQ +RMF A+GNHV L R IG + L D L PGEY+ T E+ +++ Sbjct: 183 LTLHEGRYHQARRMFVALGNHVTALQRTHIGALALKDTGLKPGEYQVTTSAELMAMI 239 >UniRef50_C4Z9Y4 Pseudouridine synthase n=16 Tax=Bacteria RepID=C4Z9Y4_EUBR3 Length = 250 Score = 145 bits (367), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 85/230 (36%), Positives = 133/230 (57%), Gaps = 6/230 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +RLDKF+++ +R+ + I+ ++ ++G + K+ + D V+ +G + Q Sbjct: 12 IRLDKFLSEMGLGTRSEVKKLIKTGQIAINGTVAAKPETKVDTDADEVSVNGRIVKYQR- 70 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y++ NKP G V +T D H TV+ ++ + V L GRLDIDT GL+L+T+DG SH Sbjct: 71 YEYYLFNKPSGCVSATCDNVHDTVMDYITDAVHDDLFPVGRLDIDTEGLLLITNDGALSH 130 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI---TPTQVRL 176 + SP H KTY ++ V D +F +G+ + EK TKPA L + + +++ L Sbjct: 131 ELLSPSKHVAKTYYARIDGEVTLDDIIRFKEGIDIGEEKP-TKPAELVIKKSGSVSEIEL 189 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 TI+EG++HQVKRMF A+G V+ L R +G + L DL G YR LT+ E Sbjct: 190 TITEGKFHQVKRMFEALGKRVIYLKRISMGPLKLPDDLKTGTYRALTQAE 239 >UniRef50_A7VSS7 Pseudouridine synthase n=2 Tax=Clostridiales RepID=A7VSS7_9CLOT Length = 256 Score = 145 bits (367), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 98/235 (41%), Positives = 138/235 (58%), Gaps = 9/235 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLA-QQHG 59 RLDK ++ Q SR AG IR V V+G + K PE D + +G PL Q+H Sbjct: 7 RLDKILSSQGVGSRKEAGILIRRGLVHVNGILATRPETKTDPERDQITIEGKPLRFQRH- 65 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWS 118 Y M+NKP G V ++ D TV+ + ++ + L AGRLD DTTGL+++TDDG+ + Sbjct: 66 -VYLMMNKPAGVVSASRDSREKTVVDLVPPVLSRRDLFPAGRLDRDTTGLLILTDDGELA 124 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI---TPTQVR 175 HR+ SP+ H K Y +++ PV + E+FA GV L + + PA L V+ T + Sbjct: 125 HRMLSPKKHVYKLYEASVDGPVGAEEIEKFAAGVALED-GTVCLPAGLTVVKQGTAWETL 183 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + I EG++HQVK+MF AVG V+ L R RIGG+ LD L GE R LT+EE+A + Sbjct: 184 VEIREGKFHQVKKMFLAVGRRVLRLKRVRIGGLELDKTLKEGECRELTKEELALI 238 >UniRef50_B2UKZ1 Pseudouridine synthase n=1 Tax=Akkermansia muciniphila ATCC BAA-835 RepID=B2UKZ1_AKKM8 Length = 230 Score = 145 bits (366), Expect = 9e-34, Method: Compositional matrix adjust. Identities = 89/229 (38%), Positives = 130/229 (56%), Gaps = 11/229 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLD +++ SR A I+ + +T G+ + K+ E + DG P+ G Sbjct: 1 MRLDALLSRYGYCSRREAPGWIKRHSITFKGKPCSSPTDKVQAE-GILLDGEPVEFPDG- 58 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-----LHAAGRLDIDTTGLVLMTDDG 115 Y L KP+GY CS DD + + L P W+ + + GRLD +T+GL+L+TDDG Sbjct: 59 LYAALYKPEGYTCSHDDGEGNLIYDLL--PFQWRHRNPAVSSVGRLDKETSGLLLLTDDG 116 Query: 116 QWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKG-VQLHNEKDLTKPAVLEVITPTQV 174 ++ HR+TSPRHH K Y E + + E FA G + L+ E PA+LE+ P + Sbjct: 117 KFIHRMTSPRHHVAKVYEAVTEEDIPTEAVELFASGTLTLNGETRPCAPALLEIREPRRA 176 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDA-DLAPGEYRPL 222 LT++EG+YHQV+RM AAVG V+ L R IG + LD+ +L PGE+ P+ Sbjct: 177 LLTLTEGKYHQVRRMLAAVGAPVLSLCRVSIGSLHLDSLNLKPGEWAPI 225 >UniRef50_Q73PD9 Pseudouridine synthase n=1 Tax=Treponema denticola RepID=Q73PD9_TREDE Length = 245 Score = 145 bits (366), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 92/241 (38%), Positives = 129/241 (53%), Gaps = 14/241 (5%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RLD+ +A SR+ + IR VDG + + +F L + + + DG PL + Sbjct: 4 RLDRILALSGLGSRSDVKKMIRKKNCCVDGVRIVSPSFILDTDLNKITIDGEPLVLRTNV 63 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPV-AWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y M NKPQG V ST DP H TV+ ++ P L GRLDIDT GL+++TDDG+ +H Sbjct: 64 -YLMFNKPQGCVTSTSDPVHKTVMDYIKAPFDRMTLFPIGRLDIDTEGLLIITDDGEITH 122 Query: 120 RITSPRHHCEKTYLVTLESPVADDT----AEQFAKGVQLHNEKDLTKPAVLEVITP---- 171 +ITSP+ KTY + L +D+ E+F KG+ L N PA E Sbjct: 123 KITSPKSGTVKTYYLELSREPSDEEFKNYCEEFEKGIVLKNGYKCL-PAKFEKCENKTGS 181 Query: 172 --TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 + + I+EG++HQVK+M + GN + L R +G I LD L GEYR L+ EEI S Sbjct: 182 FRSGFLMHITEGKFHQVKKMCLSAGNELCYLRRIAVGSIVLDETLKTGEYRELSAEEIDS 241 Query: 230 V 230 + Sbjct: 242 L 242 >UniRef50_A7HJ83 RNA-binding S4 domain protein n=3 Tax=Thermotogaceae RepID=A7HJ83_FERNB Length = 245 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 80/233 (34%), Positives = 138/233 (59%), Gaps = 6/233 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RLDKF++ +R + I+ RV+V+ EI+RN F + + + DGN + + H Sbjct: 15 IRLDKFLSNAHIGTRNEVKKIIKEGRVSVNFEIIRNPDFHVKLDDIIELDGNRI-EPHKN 73 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y + +KP G+V +T D + P+VL +D P +LH AGRLD D GL+++T+DG+++H Sbjct: 74 VYIIFHKPSGFVSTTSDRE-PSVLNLIDHPYLNELHIAGRLDKDVEGLLILTNDGEFTHN 132 Query: 121 ITSPRHHCEKTYLVTLES--PVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 + SP+ H EK Y + + V + + ++G++L T P + ++ + LTI Sbjct: 133 LISPKKHIEKEYWIYTKENVEVTQNMVKMVSEGIELEKGTK-TLPGKIRKVSEKIISLTI 191 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 EG+YHQVK+M ++G ++ R RIG +TL+ L G+++ L++EEI+ + Sbjct: 192 VEGKYHQVKKMCISLGIEWEKIVRVRIGNLTLEG-LEKGKWKELSKEEISKFI 243 >UniRef50_D0SE82 Pseudouridine synthase n=1 Tax=Acinetobacter johnsonii SH046 RepID=D0SE82_ACIJO Length = 244 Score = 145 bits (365), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 84/232 (36%), Positives = 126/232 (54%), Gaps = 5/232 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKL-LPEHDVAYDGNPLAQQHG 59 M L+K + Q SR + I+ + +DG+I+ + +KL L + G + Sbjct: 1 MLLEKMLQSQGFGSRKHCQQLIKNAAIEIDGQIITDPKYKLKLDALNYKVHGKSFEYRE- 59 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWS 118 Y LNKPQGY CS H +V D+ + + + GRLD DTTGL+L+TDDGQ+ Sbjct: 60 KVYIALNKPQGYECSHQATHHFSVFDLFDDVLLNRGIQCVGRLDQDTTGLLLLTDDGQFL 119 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 +T P+ H K Y + PV D+ +Q +GV+L NEK ++ + ++++T+ Sbjct: 120 QALTHPKKHVAKVYRMKTADPVTDEQVQQLEQGVELRNEKGSFAATDVKRLAECELQMTV 179 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDA--DLAPGEYRPLTEEEIA 228 +G YHQVKRM AAVGN V LHR++IG + L DL G + L E++A Sbjct: 180 HQGVYHQVKRMLAAVGNKVESLHRQQIGALDLTGIPDLVEGHWIYLNAEQVA 231 >UniRef50_A5Z4I7 Pseudouridine synthase n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z4I7_9FIRM Length = 175 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 77/169 (45%), Positives = 105/169 (62%), Gaps = 2/169 (1%) Query: 64 MLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRITS 123 MLNKP G + + D + TV+ LD L GRLD DT GL+L+T+DG+ SH + S Sbjct: 1 MLNKPAGVLSAVSDNNCKTVIDLLDVTPKKGLFPVGRLDKDTEGLLLITNDGELSHNLLS 60 Query: 124 PRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRL-TISEGR 182 P H +KTY V L + D E F KG+ + EK+LTKPA+L+++ L TI+EG+ Sbjct: 61 PAKHVDKTYYVELNGDLIDSDIELFEKGLDI-GEKNLTKPAILKILEKRSTALITITEGK 119 Query: 183 YHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 YHQVKRMF A+G V L R +G + LD +L PGEYR LT E+ +++ Sbjct: 120 YHQVKRMFQAIGLTVTFLKRLTMGPLKLDENLKPGEYRKLTVSEVEALL 168 >UniRef50_C8PTK2 Pseudouridine synthase n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PTK2_9SPIO Length = 246 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 94/239 (39%), Positives = 128/239 (53%), Gaps = 12/239 (5%) Query: 1 MRLDKFIAQQ-LGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG 59 +R+DK +A LG + I R +R ++G V +A L PEHD Sbjct: 3 VRIDKILAANGLGSQKDIR-RLLRKEDFRINGTRVTDAGTLLDPEHDALSRNGETLHLRT 61 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPV-AWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y MLNKP G V ST DP H TV+ L P A +L GRLD+DT GL+++T+DG + Sbjct: 62 CCYLMLNKPAGVVTSTADPLHSTVMELLPPPFPAMELFPIGRLDLDTEGLLIITNDGALT 121 Query: 119 HRITSPRHHCEKTYLVTLESPVADDT--AEQFAKGVQLHNEKDLTK-PAVLEVITPTQVR 175 HR+T+P+ C K+Y + P + T A + A L K+ T PA E T +V+ Sbjct: 122 HRLTAPKSACIKSYYLETAEPFTESTFTAARIACAEGLPLGKNFTCLPATFERTTSQRVK 181 Query: 176 ------LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 + I EG+YHQVK+M A+GN VV L R +GG+TLD L G R LT +EI+ Sbjct: 182 TEWAFLMHICEGKYHQVKKMVKALGNEVVYLKRIAMGGVTLDPKLPAGSCRELTPDEIS 240 >UniRef50_C7HRX2 Ribosomal small subunit pseudouridine synthase A n=1 Tax=Anaerococcus vaginalis ATCC 51170 RepID=C7HRX2_9FIRM Length = 236 Score = 144 bits (364), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 84/228 (36%), Positives = 129/228 (56%), Gaps = 4/228 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 MR+DK I +R + + + ++GEI+++++ K+ P D V Y G L Sbjct: 3 MRVDKMIGNANLDTRKNIKKNAKKGGLVINGEIIKDSSVKVDPNIDEVIYMG-ELVDYFE 61 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDE-PVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y M+NK +G +C +++ D TV+ LDE + L AGRLD DTTGL+LM+ DG++ Sbjct: 62 NIYIMMNKREGLICQSNELD-GTVMSDLDEFYLNLDLAIAGRLDKDTTGLLLMSTDGKFI 120 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 HR+ SP + K Y V + D E F +GV + + + A LE+I + + + Sbjct: 121 HRVISPNSNIWKKYEVETSKKIDPDLVEIFKEGVYIKEDDYYARSAKLEIIEDKKAYVYV 180 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 +EG++H VKR+F+ N VV+L R IG + LD L PG+YR LT+EE Sbjct: 181 TEGKFHLVKRLFSNNDNEVVKLKRLAIGKLQLDKTLNPGDYRELTQEE 228 >UniRef50_C9LMF3 Ribosomal small subunit pseudouridine synthase A n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMF3_9FIRM Length = 277 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 87/256 (33%), Positives = 132/256 (51%), Gaps = 28/256 (10%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF++ +R R+IR V V+GE + + F + ++ + G P+ Sbjct: 18 MRLDKFLSDMNMGTRTELKRDIRKGAVQVNGEKITDPGFMVNENDEIIFAGEPVPYFR-Y 76 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y+MLNKP G + +T+D TVL F E L GRLD DT GL+L+T+DG + HR Sbjct: 77 EYYMLNKPAGVITATEDRYQKTVLDFFGERRRKDLSPVGRLDKDTVGLLLVTNDGGFHHR 136 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEV------------ 168 + SP+ H +K Y ++ V + E+F KG+ + +E PA L + Sbjct: 137 LLSPKKHIDKEYYARIDGRVDEADREKFEKGIYV-DEIFTALPAKLMIDGYRENALESDF 195 Query: 169 --------------ITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADL 214 +++R+ + EG++HQ+KRMF A+G V+ L R RIG + LD L Sbjct: 196 MDLANSRAPKSALENGVSEIRVVVQEGKFHQIKRMFHALGKEVIYLKRIRIGSVVLDPTL 255 Query: 215 APGEYRPLTEEEIASV 230 G YR LT E+A++ Sbjct: 256 EEGTYRRLTAGEVAAL 271 >UniRef50_Q30NZ7 Pseudouridine synthase n=3 Tax=Campylobacterales RepID=Q30NZ7_SULDN Length = 228 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 90/228 (39%), Positives = 127/228 (55%), Gaps = 13/228 (5%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+D ++ +R+ A R + N V+V E + + K + ++ +G L + Sbjct: 7 RVDAHLSSLGYCTRSEAKRFLTTNNVSVYNERIFDVT-KKVHHSEIRVNGELLDAER--L 63 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAW-----KLHAAGRLDIDTTGLVLMTDDGQ 116 ++NKP G VCS D VL + P W K+ GRLDIDTTG +L++DDG Sbjct: 64 VILMNKPHGVVCSHSDSG---VLIYSLLPPRWQRRNPKVSTIGRLDIDTTGAILLSDDGA 120 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKG-VQLHNEKDLTKPAVLEVITPTQVR 175 +H++TSP+ K Y VTL + D AE FA G + L+ EK PA +EVI P VR Sbjct: 121 LNHKLTSPKSEVTKIYEVTLAQALRGDEAEIFASGELLLNGEKKPLLPAKMEVIGPIHVR 180 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLT 223 + I EGRYHQVKRMFA+VGN V LHR G +++ DL P E+R ++ Sbjct: 181 VEICEGRYHQVKRMFASVGNRVTALHRASFGDFSVE-DLKPSEFREIS 227 >UniRef50_A6LLC7 RNA-binding S4 domain protein n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LLC7_THEM4 Length = 230 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 77/223 (34%), Positives = 125/223 (56%), Gaps = 4/223 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF++ SR R I+ V ++GEI+ N FK+ V + P+ H Sbjct: 1 MRLDKFLSNAKVGSRKEVKRLIKFGIVKINGEIITNVDFKVKENDIVTVNNTPITPYHNV 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y + NKP GY S + + + F+D P LH AGRLD D GL+L+T+DG ++H+ Sbjct: 61 -YIIFNKPTGYTSSKSEFER-NIFEFIDHPYVENLHIAGRLDKDVEGLLLITNDGIFTHK 118 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 ITSP+ EK Y+V ++ ++D+ ++ G+ L N KPA+++ + + +TI+E Sbjct: 119 ITSPKSKIEKEYIVKVDKEISDEMIQKAKDGIVLKNGTRF-KPAIIKRLKDNFISITITE 177 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITL-DADLAPGEYRPL 222 G+YH++K + +G ++ R RIG + L D +L GE+ + Sbjct: 178 GKYHEIKLIVKFLGLSYKKIERIRIGKLKLEDFNLKRGEWSEI 220 >UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=A3CPQ5_STRSV Length = 242 Score = 144 bits (363), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 85/237 (35%), Positives = 139/237 (58%), Gaps = 12/237 (5%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++K+IA SR A IR +V+++G++VR A + V +G P+ + Sbjct: 1 MRINKYIAHAGIASRRKAEELIRQGKVSINGQVVRELATNVKSGDRVEVEGQPIYNEEKV 60 Query: 61 RYFMLNKPQGYVCS-TDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y++LNKP+G + S +DD TV+ L + V +++ GRLD DT+G++++T+DG ++ Sbjct: 61 -YYLLNKPRGVISSVSDDKGRKTVVELLPQ-VKERIYPVGRLDWDTSGILILTNDGDFTD 118 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT--PTQ---- 173 + PR+ +K Y+ ++ + +G+++ K TKPAV E+I P + Sbjct: 119 EMIHPRNEIDKVYVARVKGLANKEVLRPLTRGIEIEGRK--TKPAVYEIIKVDPAKNRSV 176 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 V+LTI EGR HQVK+MF AVG V +L R R G + L L PGEYR L+++E++ + Sbjct: 177 VQLTIHEGRNHQVKKMFQAVGLQVDKLSRTRFGHLDLTG-LKPGEYRKLSKKEVSQL 232 >UniRef50_UPI0001698CBA hypothetical protein Epers_16024 n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698CBA Length = 145 Score = 144 bits (363), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 67/121 (55%), Positives = 87/121 (71%) Query: 110 LMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI 169 L+TDDG WSHRI +P C K YLVTL +++ AE+ +G+ L +E TKP L+++ Sbjct: 5 LITDDGAWSHRILAPARKCSKRYLVTLAESLSERDAERLRQGILLCSEARPTKPVQLQLV 64 Query: 170 TPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 + RLTI+E RYHQVKRMFAA+GN VV LHRERIG + LD DL+PG YR LTE+EI+ Sbjct: 65 SSNSCRLTITEDRYHQVKRMFAALGNRVVVLHRERIGALQLDPDLSPGNYRALTEDEISG 124 Query: 230 V 230 + Sbjct: 125 I 125 >UniRef50_O32068 Uncharacterized RNA pseudouridine synthase ytzG n=68 Tax=Bacteria RepID=YTZG_BACSU Length = 239 Score = 143 bits (361), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 90/227 (39%), Positives = 129/227 (56%), Gaps = 8/227 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 MRLDK +A SR ++ V +DG+ ++ + P+ +V G P+ + Sbjct: 1 MRLDKLLANSGYGSRKEVKAVVKAGAVMIDGKPAKDVKEHVDPDTQEVTVYGEPVDYREF 60 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLD-EPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y M+NKPQG + +T+D TV+ L E + ++ AGRLD DT G +L+T+DGQ + Sbjct: 61 -IYLMMNKPQGVLSATEDSRQQTVVDLLTPEEMRFEPFPAGRLDKDTEGFLLLTNDGQLA 119 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP----TQV 174 HR+ SP+ H KTY V L+S ++ + GV + TKPA E+ T T + Sbjct: 120 HRLLSPKKHVPKTYEVHLKSQISREDISDLETGVYIEGGYK-TKPAKAEIKTNDSGNTVI 178 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRP 221 LTI+EG+YHQVK+M AVGN VV L R +G ++LD LAPGEYR Sbjct: 179 YLTITEGKYHQVKQMAKAVGNEVVYLKRLSMGRVSLDPALAPGEYRE 225 >UniRef50_Q38VQ0 Pseudouridine synthase n=6 Tax=Lactobacillus RepID=Q38VQ0_LACSS Length = 239 Score = 143 bits (360), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 84/236 (35%), Positives = 128/236 (54%), Gaps = 9/236 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR+D+F++ +R ++ RV V ++++ A +++ PE V D P+ Q Sbjct: 1 MRIDRFLSHMNVGTRKTLKPLLKAGRVRVADKVIKEAKYQVTPETVVYVDDEPIRYQTN- 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y++LNKP G + +T DP + F L GRLD DTTGL+L+T+DG +H Sbjct: 60 FYWLLNKPAGVISATTDPQKTVMDLFAPADYREDLFPVGRLDKDTTGLLLITNDGDLAHD 119 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVR----- 175 + SP+ H KTY + V QFA G++L + +PA L ++ R Sbjct: 120 LLSPKKHVAKTYRAKIAGVVTAADQAQFAAGLKLRDFD--AQPAQLTILRTDTARQESLI 177 Query: 176 -LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + I EG++HQVKRMF AVG V+ L R ++G ++L ADL G+YR LT EI ++ Sbjct: 178 EVEIHEGKFHQVKRMFHAVGKEVLTLERIKMGPLSLPADLKRGQYRALTTTEIDAL 233 >UniRef50_UPI0001BC42E2 ribosomal small subunit pseudouridine synthase A n=3 Tax=Fusobacterium RepID=UPI0001BC42E2 Length = 235 Score = 142 bits (359), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 84/230 (36%), Positives = 127/230 (55%), Gaps = 4/230 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR+DKF+ + SR ++ ++ V+G + + + E D Y G Sbjct: 1 MRIDKFLVECGVGSRKEVKELLKSRKIRVNGLFITSPKENIEEEKDEVYYGEKKLSYQEF 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWSH 119 RY++L+K GYV + +D TV+ L E V K L GRLD DT GL+L T+DG+ +H Sbjct: 61 RYYILHKKAGYVTALEDSREATVMDLLPEWVIKKDLAPVGRLDKDTEGLLLFTNDGKLNH 120 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 R+ SP+ H +KTY +LE + ++ E+ +GV + K L PA E + ++ LTI Sbjct: 121 RLLSPKSHVDKTYHASLECDITEEALEKLREGVMIGEYKTL--PAKAEKLEDRKIALTIR 178 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 EG++HQVK+M AVGN V+ L R G + L DL GE + ++ E+I S Sbjct: 179 EGKFHQVKKMLEAVGNKVIYLKRISFGKLVL-GDLELGEVKEVSLEDIIS 227 >UniRef50_B9XS61 Pseudouridine synthase n=1 Tax=bacterium Ellin514 RepID=B9XS61_9BACT Length = 235 Score = 142 bits (359), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 91/235 (38%), Positives = 134/235 (57%), Gaps = 7/235 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +RL KF+A+ SR + R I G RV+V+G+ VR K+ P HD +A DG PL + Sbjct: 2 VRLQKFLAEAGVASRRASERIILGGRVSVNGDTVRELGTKVDPIHDSIALDGAPLRLKR- 60 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAW-KLHAAGRLDIDTTGLVLMTDDGQWS 118 Y LNKP+GYVCS D V+ L P W L++ GRLD D+ GL+ +T+DG++S Sbjct: 61 KLYVALNKPRGYVCSRKDDRKRKVIGDL-LPAEWDNLYSVGRLDSDSEGLIFLTNDGEFS 119 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEK-DLTKPAVLEVITPTQ-VRL 176 +T PR+ K YL T+E V + ++F G+ EK + + L V T V L Sbjct: 120 LHLTHPRYRVLKKYLATVEGRVEQEMLQRFKHGIVHEGEKLKVDRARTLSVQNSTSLVEL 179 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 ++EG+ +++R+F + G V L R +IG I L +L G++R LTE EI S++ Sbjct: 180 ELTEGKNREIRRLFESQGLTVSRLVRMQIGKIKL-GELRSGKWRMLTEAEIKSLL 233 >UniRef50_D0BMY5 Pseudouridine synthase n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BMY5_9LACT Length = 237 Score = 142 bits (358), Expect = 9e-33, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 123/231 (53%), Gaps = 5/231 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL+ + + +SR + I V +D + + + P+ V + + Sbjct: 1 MRLEHLLMKHFDISRKQMKKLISSGEVLIDSTPATHVSNNVDPQIQVITVQGSRMEDNSQ 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 +Y++LNKP+G + +T D PTV+ L+ GRLD DT GL+++T++G +R Sbjct: 61 KYYLLNKPKGVITATTDSQLPTVIDLFKNENIEGLYPIGRLDRDTEGLLIITNNGPLGYR 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TPTQVRL 176 + +P H EK Y V + P+ + ++F G+ H + + KPA L ++ + ++ + Sbjct: 121 LLNPIQHIEKEYYVEVNGPLDNSCIQRFYDGIMFH-DGTICKPAKLSILESSPSFSKATV 179 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 TISEG++HQ+K+MF VG V L R R G LD L+PGEYRPL E+ Sbjct: 180 TISEGKFHQIKKMFLCVGVKVTFLKRIRFGEFLLDESLSPGEYRPLNFSEL 230 >UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q24V73_DESHY Length = 257 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 86/233 (36%), Positives = 127/233 (54%), Gaps = 9/233 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLA-QQHGP 60 RL K +AQ SR A I RV V+GE++R K++ + DG L+ Q+ Sbjct: 17 RLQKVLAQAGIASRRHAEEIILQGRVKVNGEVIRTLGTKVVSTDRIVVDGRLLSIPQNDY 76 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y++L+KP GY+ S DP + L + +++ GRLD DT+GL+L+T+DG +HR Sbjct: 77 AYYLLHKPTGYITSVTDPQGRKTVMELMPKIPRRVYPVGRLDYDTSGLLLLTNDGDLAHR 136 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT------QV 174 + P + EKTY V + + + ++ KGV L + K T PA + ++P Sbjct: 137 LMHPSYGVEKTYRVEVGEKIPEQALKRLEKGVLLEDGK--TAPARIREVSPKGRGSLPTY 194 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 +TI EGR QV+RMF AVG + L R R G + LD LAPG +R L++ EI Sbjct: 195 EITIHEGRNRQVRRMFKAVGFPLSTLKRLRFGPLELDPSLAPGAFRTLSKTEI 247 >UniRef50_C6XLQ6 Pseudouridine synthase n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XLQ6_HIRBI Length = 247 Score = 142 bits (357), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 90/240 (37%), Positives = 128/240 (53%), Gaps = 14/240 (5%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDV----AYDGNPLAQ 56 +RLDK ++ +R R R+ + + ++ + K+ P D+ D P+ Sbjct: 8 VRLDKLLSNMGYGTRKEIDALARYQRILLGDKGFKSGSDKVTPNEDLQNRLTIDDKPVDP 67 Query: 57 QHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-----LHAAGRLDIDTTGLVLM 111 G MLNKP G CS D F P W L GRLD +T+GL+L+ Sbjct: 68 LPG-FAVMLNKPAGVTCSRKDSGTLITELF---PSRWDKRDPLLSPIGRLDKETSGLLLL 123 Query: 112 TDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKG-VQLHNEKDLTKPAVLEVIT 170 TDDGQ +HR++SP+ K Y V L+ + D FA G + L +E PA L + Sbjct: 124 TDDGQLNHRVSSPKTQTPKRYHVILDRDLNGDEDSIFAAGELMLESETKPLLPAELSALG 183 Query: 171 PTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + LT+ EGRYHQV+RMFAAVGNHV LHRE IGG+TL DL G++R ++E +I+++ Sbjct: 184 KREAILTLHEGRYHQVRRMFAAVGNHVNALHRESIGGLTLPEDLQQGQWRIMSETDISAI 243 >UniRef50_C1D9V0 Pseudouridine synthase n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9V0_LARHH Length = 231 Score = 141 bits (355), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 89/232 (38%), Positives = 127/232 (54%), Gaps = 8/232 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAY---DGNPLAQQ 57 M+L++ + ++ SR I RV V GE+ + ++ PE +AY D +A++ Sbjct: 1 MQLERLLHREGWSSRKGCRILINQGRVCVAGEVADDPGLEVEPE-GLAYSVDDEAAIARE 59 Query: 58 HGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQ 116 H Y +LNKP CS VL + + + GRLD DT+GL+L++DDGQ Sbjct: 60 H--LYLILNKPLDLECSRKPTVRTGVLTLFPPRYSERGVQPVGRLDADTSGLLLLSDDGQ 117 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRL 176 + HRITSP+H KTY+ T PV + Q GV L+++ + + L Sbjct: 118 FIHRITSPKHLVPKTYVATCARPVEPEHLRQLLAGVVLNDDPAPVVARSARTLDEHTLEL 177 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 ++EGRYHQV+RM AAVGNH LHR RIG + LD LAPG++R LT E+A Sbjct: 178 VVTEGRYHQVRRMIAAVGNHCDALHRSRIGELVLDG-LAPGQWRELTAAELA 228 >UniRef50_Q4A5Z2 Pseudouridine synthase n=2 Tax=Mycoplasma synoviae 53 RepID=Q4A5Z2_MYCS5 Length = 234 Score = 140 bits (353), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 81/230 (35%), Positives = 128/230 (55%), Gaps = 6/230 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAY-DGNPLAQQHG 59 +R++KFIA +R + I V V+ I++ + + P+ D Y +G L + Sbjct: 3 IRIEKFIADSTLYTRNEIKKLISKGLVKVNDLIIKKSQ-SIDPKLDKIYLEGILLEAREE 61 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVL-YFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQW 117 Y M+NKP GY+C+ D + V LD + K GRLDIDT GL+++T+DG+ Sbjct: 62 FSYIMMNKPAGYICANFDWNKQVVFELLLDLEMNLKDFFTIGRLDIDTEGLLIITNDGKL 121 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT 177 SH + SP+ H KTY V L+ P+ + E K + + K K ++L I+ + +T Sbjct: 122 SHNLLSPKKHIPKTYYVELDKPLEKNIKELLEKELLIDEIK--YKKSILNNISNNKWEIT 179 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 I EG++HQ+K +FA G V L R ++ ++LD +L PGEY+ LT+EE+ Sbjct: 180 IFEGKFHQIKIIFAHFGYKVTYLKRIKMNNLSLDENLKPGEYKFLTKEEL 229 >UniRef50_Q5SLZ5 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q5SLZ5_THET8 Length = 243 Score = 139 bits (350), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 91/227 (40%), Positives = 125/227 (55%), Gaps = 9/227 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPL-AQQHGP 60 RLDK +A+ SR R +R +V V G++V++ F++ + +G PL ++H Sbjct: 5 RLDKVLARLGLGSRKEVARLVRQGKVRVLGQVVKDPGFRVPEGAALEVEGRPLEVRRH-- 62 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 + +L+KP G+V S + P+V L L GRLD D GL+L T DG HR Sbjct: 63 LHVLLHKPPGFVTSRTE--GPSVYALLQGFPTRDLSPVGRLDKDAEGLLLFTTDGLLLHR 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT-PTQVRLTIS 179 +T PRH K YLV LE PV E F +G+ L +K L PA L + PT + + Sbjct: 121 LTHPRHKVAKRYLVHLERPVGPKDQEAFREGILLDGKKTL--PAELTPLEDPTWAEVVLK 178 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 EGR+HQ+KRMF A GN V+ L R +G + L DL PG+ RPLTE E Sbjct: 179 EGRFHQIKRMFRARGNRVLRLKRLALGPLEL-GDLPPGKARPLTEAE 224 >UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFA0_THET1 Length = 253 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 84/231 (36%), Positives = 133/231 (57%), Gaps = 10/231 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL K +AQ SR A R I RV+V+G IV PE ++ DG + QQ Sbjct: 5 IRLHKLLAQMGVASRRAAERMIAEGRVSVNGRIVNTPGAMASPEDEIRVDGKLVRQQPKM 64 Query: 61 RYFMLNKPQGYVCST-DDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 RY +LNKP G + + D+ TV+ L + + +++ GRLD D+ GL+L+T+DG+ + Sbjct: 65 RYILLNKPAGVLSTAKDERGRKTVIDLLGQ--SNRVYPVGRLDKDSEGLMLLTNDGELAQ 122 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT----PTQVR 175 RIT PR+ K Y+V +E +D + + +GV+L E +KP ++I+ +++ Sbjct: 123 RITHPRYGVHKQYMVEVEGYFSDRSLQDLLQGVEL--EDGFSKPLDAKIISRSRDKSKLL 180 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 +T+ EGR QV+R AA+G V L R +G ++L +L PGEYR L+++E Sbjct: 181 ITMGEGRKRQVRRTLAALGYKVKRLTRVALGPLSL-GNLKPGEYRELSDQE 230 >UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B0TFD8_HELMI Length = 333 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 88/235 (37%), Positives = 127/235 (54%), Gaps = 8/235 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDV-AYDGNPLAQQHG 59 +RL K +A SR A IR RV ++G +VR ++ DV DG L ++ Sbjct: 6 VRLQKLLAAHGVASRREAEAMIRAGRVRINGTVVREQGVRVDGARDVIEVDGRILKRREA 65 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 P Y+ L KP+G V + DP + L V +++ GRLD DT GL+L+T+DGQ + Sbjct: 66 PLYYALYKPRGVVTTCKDPQGRQTVIGLLSGVNERVYPVGRLDRDTEGLLLLTNDGQLAF 125 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT----PTQVR 175 R+T PR EKTY L V+ + A+GVQL E +T PA + ++ T + Sbjct: 126 RLTHPRFGVEKTYRARLRGDVSAGALKALAEGVQL--EDGVTAPAQVRLLRREGDATWIE 183 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + I EGR Q++RM A+G+ V++L R G ITL L PGE RPLT E+ ++ Sbjct: 184 IKIHEGRKRQIRRMGDAIGHPVIDLERIAFGPITL-GKLKPGEVRPLTSAELRAL 237 >UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadales RepID=B3E7C4_GEOLS Length = 274 Score = 138 bits (347), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 89/234 (38%), Positives = 125/234 (53%), Gaps = 8/234 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 RL K I+ SR A I RVTV+G++V K P D +A DG P+ Sbjct: 4 RLQKIISAAGITSRRAAEEMILAGRVTVNGQVVTELGSKADPAKDLIALDGQPVKPAETF 63 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +L+KP GYV S DP ++ L + V +L GRLD ++ GL+L+T+DG W++R Sbjct: 64 YYVLLHKPAGYVTSLKDPQGRQLVTELVKDVGERLFPVGRLDYNSEGLLLLTNDGAWANR 123 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ----VRL 176 + PRH +K Y V + + ++ A GV+L E T + ++ Q + + Sbjct: 124 LMHPRHQVDKEYHVRVRGKIDPQQIKKLADGVEL--EDGPTGATTVRLLKNDQSNDWLSV 181 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 TI EGR QV+RM AAVG VV L R R G +TL L PGEYR L+ EE ++ Sbjct: 182 TIREGRNRQVRRMCAAVGLFVVRLRRIRYGNLTL-GGLQPGEYRLLSREEAQAL 234 >UniRef50_C1XNC4 Pseudouridine synthase n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XNC4_MEIRU Length = 257 Score = 136 bits (343), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 98/234 (41%), Positives = 125/234 (53%), Gaps = 9/234 (3%) Query: 2 RLDKFIAQQLGV-SRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 RLDK + LGV SR R R +T++G+IV +A FK P + G PL Q Sbjct: 20 RLDKVLGH-LGVGSRKEIHRLARAGLITINGKIVADAGFKFDPSQAHIEVAGEPLVYQKF 78 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK--LHAAGRLDIDTTGLVLMTDDGQW 117 Y +LNKP GY+ ST DP + L E W+ GRLD DT GL+L+T DG+ Sbjct: 79 -FYLLLNKPAGYITSTKDPSGTPITALLPEEF-WRNDWMPVGRLDKDTEGLLLLTTDGEL 136 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEV-ITPTQVRL 176 HR+T PR K Y V L SP + FA G L E + +PA L + P +V L Sbjct: 137 LHRLTHPRWKVTKRYYVELASPATPEDVAVFAAGT-LELEGEPLQPAELYLGPDPRKVEL 195 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EGR+HQVKRMFAA GN V L R G + L +L PG R LT +EI ++ Sbjct: 196 VLREGRFHQVKRMFAARGNQVTYLKRLAFGPLQLPPNLPPGASRQLTPDEIKAL 249 >UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0N6F1_9FIRM Length = 241 Score = 136 bits (343), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 84/236 (35%), Positives = 129/236 (54%), Gaps = 12/236 (5%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K IA SR A I +V V+G++V K+ + +G PL ++ Sbjct: 3 RLQKAIAASGYTSRRKAEDLIVQGKVEVNGKVVTELGTKVKQGDLITVEGKPLVGEN-KV 61 Query: 62 YFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y++ KP+G VC+ DD D P + + E V +++ GRLD DTTGL++M++DG++++ Sbjct: 62 YYVFYKPKGCVCTLDDEFDRPIITDYFTE-VKERIYPVGRLDFDTTGLIIMSNDGEFANM 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI------TPTQV 174 I PR H EK Y V+++ + T + KGV L K L P ++V+ T + Sbjct: 121 IMHPRSHLEKIYEVSIKGLITGPTLNKLEKGVYLEGVKTL--PCKIKVVDKDTEHKTTML 178 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 ++ + EG+ QVK+MF +VG+ V LHR IGGI L L PG YR L +E+ + Sbjct: 179 KIKLVEGKNRQVKKMFESVGHPVKRLHRVSIGGINLKG-LTPGRYRILKPQEVKDL 233 >UniRef50_C9KIR7 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KIR7_9FIRM Length = 250 Score = 136 bits (343), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 91/241 (37%), Positives = 132/241 (54%), Gaps = 16/241 (6%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL K I+Q SR A + I RV VDG++VR K+ P H + DG +A + Sbjct: 6 RLQKIISQAGIASRRAAEKMILEGRVRVDGQVVRELGTKVDPAAHTILVDGKKIAGEEQH 65 Query: 61 RYFMLNKPQGYVCST-DDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+GY+ + DD TVL L E V +++ GRLD +T GL+L+T+DG + Sbjct: 66 VYLLLNKPKGYLSTAKDDRGRRTVLDLLPE-VRERVYPVGRLDNNTEGLLLITNDGALMN 124 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP-------- 171 + PR EKTY + + ++ + G+ L E +T PA + ++ Sbjct: 125 GLLHPRFEVEKTYHAGVTGKLTEEKLQMLRDGLLL--EDGMTAPAKVSLLPEREPGERVR 182 Query: 172 --TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 T+ +TI EGR QV+RMFAAVG V L R R G+TL +A G++R LTEEE++S Sbjct: 183 GLTRAAITIHEGRNRQVRRMFAAVGCDVKSLKRVRFAGLTLKG-VARGQHRALTEEEVSS 241 Query: 230 V 230 + Sbjct: 242 L 242 >UniRef50_B0N857 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0N857_9FIRM Length = 235 Score = 136 bits (342), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 75/230 (32%), Positives = 123/230 (53%), Gaps = 16/230 (6%) Query: 6 FIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAF-----KLLPEHDVAYDGNPLAQQHGP 60 + +LG + I IR + V+ +++ + + ++ H + + P Sbjct: 13 LMKNKLG-NHKICKTLIRHGEIRVNDQVITDVRYPVKADDIIMYHHIQLNAQPFV----- 66 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y+M+NKP Y+C+ D H V+ + + L GRLDIDTTGL+++T+D S + Sbjct: 67 -YYMMNKPADYLCANHDKYHQCVIDLIGREDCYCL---GRLDIDTTGLLIITNDTSLSKK 122 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 + P++H K Y VT + P+ D+ ++F GV + + K P++LE++ +TI+E Sbjct: 123 LLLPQNHVNKKYYVTTKFPLKDELIKKFFDGVVI-DHKVQCLPSLLEILDEYHCLVTINE 181 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GRYHQ+K+MF + N V L R GI LD LA GEYR LT E+ ++ Sbjct: 182 GRYHQIKKMFKSCQNEVCTLKRIAFAGIELDQKLALGEYRDLTSTELITL 231 >UniRef50_Q47QM5 Pseudouridine synthase n=3 Tax=Actinomycetales RepID=Q47QM5_THEFY Length = 375 Score = 135 bits (341), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 87/236 (36%), Positives = 133/236 (56%), Gaps = 7/236 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEH-DVAYDGNPLAQQHG 59 +RL K +AQ SR I RV+VDG+IVR ++ PE ++ DG + Sbjct: 135 IRLQKALAQAGVASRRACEELIAAGRVSVDGQIVRRFGARVDPEKSEIRVDGMRVVTSQN 194 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDE--PVAWKLHAAGRLDIDTTGLVLMTDDGQ 116 RY+ LNKP+G V + DP+ PT+ + + P+ +L GRLD DT GL+L+T+DG+ Sbjct: 195 LRYYALNKPRGVVSTMFDPEGRPTIGDYAAQIGPIEERLFHVGRLDTDTEGLILLTNDGE 254 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNE-KDLTKPAVLEVITPTQ-V 174 ++R+T PR+ KTYL + PV D Q KGV+L + + V++ I P V Sbjct: 255 LANRLTHPRYKVTKTYLAKVPGPVPRDVIRQIRKGVELDDGFVKVDSFRVIDNIEPKALV 314 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + + EGR H V+R+ AVG+ V +L R +IG + L+ +L G R LT +E++ + Sbjct: 315 EIRLHEGRKHIVRRLMKAVGHPVSDLARTQIGPVGLN-NLKSGTIRALTSQEVSEL 369 >UniRef50_A9BZ50 Pseudouridine synthase n=49 Tax=Betaproteobacteria RepID=A9BZ50_DELAS Length = 249 Score = 135 bits (341), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 73/181 (40%), Positives = 106/181 (58%), Gaps = 8/181 (4%) Query: 58 HGPRYFMLNKPQGYVCSTDDPDHPTVL--------YFLDEPVAWKLHAAGRLDIDTTGLV 109 H Y +L+KP G CS +P++ ++ + A GRLD DTTGL+ Sbjct: 66 HALGYVLLHKPAGTECSQKPSTYPSIYSLLPLPLRLRPNKGAVQGVQAVGRLDQDTTGLL 125 Query: 110 LMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI 169 L++DDGQ+ HR++SP+ H K Y VT + PV ++ GV L ++ K A E + Sbjct: 126 LLSDDGQFIHRMSSPKKHVPKIYRVTTKHPVDASQVQRLLDGVVLDDDPKPVKAAACEQV 185 Query: 170 TPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 + + LT++EG+YHQVKRM AAVGN V LHR +IG + L DL PG++R LT E++A Sbjct: 186 SEHVLDLTLTEGKYHQVKRMIAAVGNRVEGLHRWKIGELELTEDLQPGQWRWLTAEDLAK 245 Query: 230 V 230 + Sbjct: 246 L 246 >UniRef50_A3CLN2 Pseudouridine synthase n=59 Tax=Lactobacillales RepID=A3CLN2_STRSV Length = 241 Score = 134 bits (338), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 85/236 (36%), Positives = 131/236 (55%), Gaps = 15/236 (6%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQH-- 58 MRLD+ +A +SR + + ++ VDG+ A+KL D +H Sbjct: 1 MRLDQLLAAN-HISRKKMKQSLLQKQILVDGK----PAYKLSQNVDTGLQQITFQGKHVS 55 Query: 59 GP--RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDG 115 GP RY+MLNKP G V + D + TVL LD+ + + L++ GRLD DT GL+L+TD+G Sbjct: 56 GPAHRYYMLNKPSGAVTANRDAEKLTVLDLLDKEIEKENLYSIGRLDRDTEGLLLITDNG 115 Query: 116 QWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPA----VLEVITP 171 ++ P++H EKTY V + P+ F +G++ + + +PA + + Sbjct: 116 PLGFQLLHPQYHVEKTYYVEVNGPLTSQDKIAFQEGIRFLD-GTICQPAQLSILSSSSSL 174 Query: 172 TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 ++ + ISEG++HQ+K+MF AVG V L R + G TLD DLA G+YR L +EE+ Sbjct: 175 SRATVKISEGKFHQIKKMFLAVGVKVTYLKRIQFGDFTLDPDLAKGDYRALNQEEL 230 >UniRef50_B7A9J5 Pseudouridine synthase n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A9J5_THEAQ Length = 245 Score = 134 bits (337), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 99/227 (43%), Positives = 127/227 (55%), Gaps = 9/227 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLA-QQHGP 60 RLDK +A+ SR GR IR +V V G +V + F + + +G PLA ++H Sbjct: 14 RLDKLLARLGLGSRKEVGRLIRSGKVRVGGGVVLDPGFHVPEGAALEVEGRPLAVRRH-- 71 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 + +L+KP GYV S + P+V L+ L GRLD DT GL+L T DG+ HR Sbjct: 72 LHLLLHKPAGYVTSRKE--GPSVYALLEGFPTRDLSPVGRLDKDTEGLLLFTTDGELLHR 129 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT-PTQVRLTIS 179 +T PRH EK YLV L P F +G+ L EK L PA L + PT V LT+ Sbjct: 130 LTHPRHKVEKRYLVHLLHPATAADVRAFQEGILLSGEKTL--PARLHLGEDPTWVELTLL 187 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 EGR+HQVKRMF A GN V+ L R +G +TL+ DL G RPLT EE Sbjct: 188 EGRFHQVKRMFQARGNQVLYLKRLALGPLTLE-DLPLGAARPLTPEE 233 >UniRef50_D1BMI6 Pseudouridine synthase n=3 Tax=Veillonella RepID=D1BMI6_VEIPT Length = 232 Score = 134 bits (336), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 85/229 (37%), Positives = 120/229 (52%), Gaps = 4/229 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 MRLDK +A + SR + I+ RVT++G I + + D VA DG ++ Sbjct: 1 MRLDKLLANKAYGSRKEVHQIIKDRRVTINGSITTKKDTHIDIDVDIVAVDGKVVSTTQ- 59 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLD-EPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y +KP+GYV + +D +HP V+ L E + + GRLD DT GL+L+T+DG W Sbjct: 60 LYYVKFHKPKGYVTAVEDSNHPVVMDLLPPEFIKMGVVPVGRLDKDTEGLLLLTNDGVWG 119 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 H I + H K Y V E ++D+ ++ KG+ L + KPA +E ++ V +TI Sbjct: 120 HSIINGNKHVPKIYYVEFEGTLSDEGIQRIKKGILL-GDGTQCKPAEIEFVSLHSVHVTI 178 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 EG+YHQVKRM A G V L R IG I L G LT E+I Sbjct: 179 EEGKYHQVKRMIGAAGGTVTYLKRLTIGHIDLSGIEEVGSAMELTVEQI 227 >UniRef50_C0ACE6 Pseudouridine synthase n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0ACE6_9BACT Length = 253 Score = 132 bits (333), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 98/254 (38%), Positives = 129/254 (50%), Gaps = 32/254 (12%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVD---------GEIVRNAAFKLLPEHDVAYDGN 52 RLD+ ++ SR A +R + VT+ G V N + L P D + N Sbjct: 4 RLDQLLSSLGYCSRREARDFLRAHTVTISPPPPPPPSAGNSV-NVSVGLQPLRDPSAKVN 62 Query: 53 PL-----------AQQH-GPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-----L 95 PL A H G ML+KP G+VCS D+ + P V L P W+ + Sbjct: 63 PLDPARPVFVDGEALDHPGGLLLMLHKPTGFVCSHDEREGPRVYDLL--PPRWRARNPQV 120 Query: 96 HAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKG-VQL 154 + GRLD DT+GL+++TD + H TSPRH K Y TL+ V + FA G +QL Sbjct: 121 TSIGRLDKDTSGLLILTDRTELVHTYTSPRHKVPKLYRATLDRDVPASLVDLFAAGTLQL 180 Query: 155 HNEKDLTKPAVLEVITPTQVRLTISEGRYHQVKRMF-AAVGNHVVELHRERIGGITLDAD 213 EK PA L + P L + EG+YHQV+RMF AA G V+ LHRE G +TL D Sbjct: 181 DGEKAPCAPATLRLPAPRVAELVLVEGKYHQVRRMFAAAAGATVLTLHRECFGRLTL-GD 239 Query: 214 LAPGEYRPLTEEEI 227 L PGEYR ++E EI Sbjct: 240 LKPGEYREISESEI 253 >UniRef50_Q5WE78 Pseudouridine synthase n=10 Tax=Firmicutes RepID=Q5WE78_BACSK Length = 243 Score = 132 bits (333), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 95/232 (40%), Positives = 130/232 (56%), Gaps = 7/232 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 MRLDK +A +R + ++ V VDG +V++ + PE V Y G P+ + Sbjct: 1 MRLDKMLANAGYGTRNEVKKALKQGVVEVDGAVVKDGKLHVQPERQSVCYAGTPV-RYKA 59 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFL-DEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y MLNKP G V +T+D TVL + +E K GRLD DTTGL+L+T DG +S Sbjct: 60 ELYLMLNKPAGVVTATEDARQKTVLDLMKNEWGHMKPFPVGRLDKDTTGLLLLTTDGAFS 119 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP---TQVR 175 H + +P+ H K Y +E V E F GV L ++ TKPA LE+ + + Sbjct: 120 HELMAPKKHIAKEYRALVEGKVTQADVEAFKNGVVL-DDGYCTKPAQLEIEESGPLSAIS 178 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 L ++EG++HQVKRMFAAVG V++L R RIG + LD+ L G YR LT EI Sbjct: 179 LELTEGKFHQVKRMFAAVGKKVIKLERIRIGSLLLDSSLPKGGYRELTPAEI 230 >UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3U4L2_9BACT Length = 420 Score = 132 bits (333), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 90/232 (38%), Positives = 129/232 (55%), Gaps = 10/232 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +RL K IA SR A I RVT++G +V+ K+ P D V DG L Sbjct: 3 VRLQKLIAGTGLASRRKAEELITSGRVTINGSVVKELGTKVDPARDHVKVDGKHLRAAQP 62 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y +LNKP+ + + DDP+ PTV L V ++ GRLD D+ GL+L+T+ G + Sbjct: 63 YVYLILNKPKNVMSTLDDPEGRPTVKDLLHG-VTVRVFPVGRLDFDSEGLMLLTNHGDLA 121 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ----V 174 + PR+H KTYL+ ++ + D E +GV+L E T PA ++ ++ + + Sbjct: 122 QALLHPRYHVPKTYLIKVKGVLDDAKIEALERGVKL--EDGFTAPAKVKKVSRAESNSWL 179 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 +TI EGR HQVKRM AVG+ V++L R R+G + L DLAP EYR LT+ E Sbjct: 180 EVTIHEGRKHQVKRMVEAVGHSVIKLVRVRMGPLLL-GDLAPREYRFLTDRE 230 >UniRef50_Q54RS0 Putative uncharacterized protein n=1 Tax=Dictyostelium discoideum RepID=Q54RS0_DICDI Length = 571 Score = 132 bits (333), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 91/242 (37%), Positives = 137/242 (56%), Gaps = 20/242 (8%) Query: 1 MRLDKFIAQQLGV-SRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG 59 +R+++ ++ LGV R+ + +R RVTV G+ V A + D+ DG P+ + Sbjct: 9 LRIERILSN-LGVCERSRVPQFLRDKRVTVLGKKVTPATKANIK--DIQIDGEPI-ENGE 64 Query: 60 PRYFMLNKPQGYVCST-DDPDHPTVL------YFLDEPVAWKLHAAGRLDIDTTGLVLMT 112 + ++KP GY+CST +D DH + +F +P L AGRLD TGLV+++ Sbjct: 65 TLHIAVHKPSGYICSTVNDHDHKIIYDILPKEFFKRKPT---LSIAGRLDKWVTGLVVLS 121 Query: 113 DDGQWSHRITSPRHH-CEKTYLVTLESPVADDTAEQFAKG-VQLHNEKDLTKPAVLEVI- 169 DG+ RI SP+ C K Y V L+ + D AE F G + L E KPA L+V+ Sbjct: 122 QDGKLVDRIISPKDDGCGKDYEVVLKDKLVGDEAEVFESGKIMLRGESTPCKPAKLQVLD 181 Query: 170 -TPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 +V++T+ EGRYHQ++RMFA+ N VE+HR RIG + L DL G++R LTE+E+ Sbjct: 182 KEKNKVKVTLYEGRYHQIRRMFASTENKAVEIHRTRIGPVEL-GDLGLGKWRHLTEQELK 240 Query: 229 SV 230 + Sbjct: 241 EL 242 >UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales RepID=B4U4Q4_STREM Length = 266 Score = 132 bits (331), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 82/237 (34%), Positives = 139/237 (58%), Gaps = 12/237 (5%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++K+IA SR A I+ VT++G++V + A + V +G+P+ + Sbjct: 27 MRINKYIAHAGVASRRKAEELIKRGLVTLNGQVVTDLATTVKSGDLVEIEGSPIYNEEKV 86 Query: 61 RYFMLNKPQGYVCS-TDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y++LNKP+G + S +DD TV+ L + V +++ GRLD DT+GL+++T+DG ++ Sbjct: 87 -YYLLNKPRGVISSVSDDKGRQTVIDLLPQ-VKERIYPVGRLDWDTSGLLILTNDGDFTD 144 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI------TPTQ 173 ++ PR+ +K YL ++ V ++ +GV + +K TKPA +I + Sbjct: 145 KMIHPRNEIDKVYLARVKGVVTKESLRPLTRGVVIDGKK--TKPARYRIIRVEPDKNRSI 202 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 V LTI EGR+HQVK+MF AVG+ V +L R + G + + L PGE R L+++E++ + Sbjct: 203 VELTIHEGRHHQVKKMFEAVGHLVDKLSRTQFGSLDVRG-LKPGEARRLSKKEVSQL 258 >UniRef50_A1TM39 Pseudouridine synthase n=3 Tax=Comamonadaceae RepID=A1TM39_ACIAC Length = 253 Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 87/244 (35%), Positives = 126/244 (51%), Gaps = 20/244 (8%) Query: 4 DKFIAQQLGVSRAIAGR------EIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQ 57 D +Q G R AG ++R +A + PE Y Q Sbjct: 10 DILYSQGFGTRRVCAGLIQHGHVQLREKGDAGGAWTCTDAGLDVDPEGLTFYVQGTAWQW 69 Query: 58 HGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK--------LHAAGRLDIDTTGLV 109 H Y M+NKP CS +P+V L +P+ + + GRLD DTTGL+ Sbjct: 70 HERAYVMMNKPAAVECSQKPSTYPSVYTLLPDPLRQRPGPGKILGVQTIGRLDQDTTGLL 129 Query: 110 LMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKP--AVLE 167 L++DDG + HR++SP+ +KTY V + ++ +Q KGV L+++ KP AV Sbjct: 130 LLSDDGSFIHRVSSPKKQIQKTYRVHAKYDLSQQQKDQLLKGVVLNDD---PKPVIAVDC 186 Query: 168 VITPTQV-RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 V+ V LT++EG+YHQ+KRM AAVGN V +LHR RIGG+ L DL G++R L EE+ Sbjct: 187 VLQEGPVFDLTVTEGKYHQIKRMVAAVGNRVEQLHRIRIGGLHLPDDLQAGDWRWLREED 246 Query: 227 IASV 230 + + Sbjct: 247 VRRI 250 >UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7ICF2_9CLOT Length = 235 Score = 131 bits (330), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 126/231 (54%), Gaps = 7/231 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL K++A SR A I+ RV V+ I+ N + V DG P+ + Sbjct: 4 IRLQKYLAHAGVASRRKAEEMIKQGRVAVNNVIIENMGATVTCNDVVTVDGKPVTTEEAK 63 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y MLNKP GYV ++ D + L + +L+ GRLD DT+GL+L+T+DG +++R Sbjct: 64 VYIMLNKPVGYVSTSKDQFGRPAVIDLVKDAGKRLYPVGRLDYDTSGLILLTNDGDFTYR 123 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP----TQVRL 176 +T P+H K Y + + +F G+++ + + T PA EV+ T VR+ Sbjct: 124 LTHPKHEVNKVYEAVISGFPDKNEITRFETGLKIDDYQ--TSPAEFEVLNKKGINTLVRI 181 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 TI EG+ QV++M A+G+ V+ L R +IG I L+ +L G++R L++ E+ Sbjct: 182 TIHEGKNRQVRKMCEAIGHKVLTLKRIQIGPIALE-NLPEGKWRHLSDNEV 231 >UniRef50_Q73PC4 Pseudouridine synthase n=1 Tax=Treponema denticola RepID=Q73PC4_TREDE Length = 234 Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 124/232 (53%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL ++A+ SR + I RV+VDG+I+ K+ + + DG + + Sbjct: 5 IRLQVYLARCGVASRRASENLILNGRVSVDGKIITELGIKVSGKEKICLDGKQIFPEAEK 64 Query: 61 RYFMLNKPQGYVCS-TDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 RY +LNKP+GYVCS D+ D P L + +L+ GRLD+ + G +L T+DG +S Sbjct: 65 RYILLNKPEGYVCSLADEKDRPIAASLLKDTYTERLYNIGRLDMLSGGAILFTNDGDFSA 124 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 ++ P EK Y V D+ ++F +GV++ E K E I+ ++R+ + Sbjct: 125 KVEHPSSEIEKEYEVITVFEYPDEILQKFLRGVRI--EGVFYKALSAERISKNKMRIVLI 182 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 EG+ +++R+ + +L R RIG + L ADL G++RPLT EEI ++ Sbjct: 183 EGKNREIRRVLKFFNIKIKKLTRVRIGCVYL-ADLPSGKHRPLTSEEIKGLL 233 >UniRef50_Q04F57 Pseudouridine synthase n=2 Tax=Oenococcus oeni RepID=Q04F57_OENOB Length = 237 Score = 131 bits (329), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 76/234 (32%), Positives = 133/234 (56%), Gaps = 9/234 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K IAQ SR A I +V V+G+I+ K + D+ Y N + Sbjct: 6 RLQKRIAQAGVASRRKAEEMIVNGQVKVNGKIITKLG-KKVSSDDIVYVDNKKINEESFE 64 Query: 62 YFMLNKPQGYVCSTDD-PDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y++LNKP GYV S P+ P+V+ + ++ + GRLD DTTG++L+T+DG+ + + Sbjct: 65 YYLLNKPAGYVSSNRSYPNQPSVIELI--KTKTRIFSVGRLDQDTTGVLLLTNDGELTQK 122 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPA-VLEVITPTQ---VRL 176 +T P+H ++TY ++ V +D EQ K ++ E + A +L+V Q + + Sbjct: 123 LTHPKHRIKRTYAAWVKGIVNEDEIEQLTKPIRFDGEIYFPQAARILKVDQKRQESLIEI 182 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 TI+EG+ H++K++ +G+ V++L+R+ GIT+ +L G++R L+E+E+ + Sbjct: 183 TIAEGKNHEIKKILDFIGHPVIKLNRDMFDGITI-GNLKKGQHRALSEQEVEKI 235 >UniRef50_C5WHS2 Pseudouridine synthase n=41 Tax=Firmicutes RepID=C5WHS2_STRDG Length = 238 Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 90/238 (37%), Positives = 122/238 (51%), Gaps = 21/238 (8%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDK + SR + I+G V +D EI + + P G L + G Sbjct: 1 MRLDKLLEVVTDGSRRQVKQLIKGQDVRIDHEIAWSGRQNVDP-------GLQLIEISGK 53 Query: 61 R-------YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAW-KLHAAGRLDIDTTGLVLMT 112 R YF+LNKP G V + D +H TVL L E L+ GRLD DT GLVL+T Sbjct: 54 RISHPKHSYFILNKPAGVVSARSDINHVTVLDQLSEKDRHPDLYPVGRLDRDTEGLVLLT 113 Query: 113 DDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP- 171 D+G R+ P HH KTY+VT+ + D + FA G++ + +PA L ++ Sbjct: 114 DNGPLGFRMLHPSHHVAKTYMVTVNGFLDADAPDFFAAGIKFPTGEQ-CRPAQLTILQAS 172 Query: 172 ---TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 +Q RL ISEG++HQVK+MF G V+ L R G+ L +LA G YR LT+ E Sbjct: 173 QEKSQARLVISEGKFHQVKKMFLTYGLKVISLKRASFAGLEL-GELASGAYRSLTDAE 229 >UniRef50_Q13UY7 Pseudouridine synthase n=45 Tax=root RepID=Q13UY7_BURXL Length = 261 Score = 130 bits (327), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 86/236 (36%), Positives = 119/236 (50%), Gaps = 9/236 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAY----DG-NPLA 55 M L+ + Q SR I RV++ G + +A P D + DG + Sbjct: 26 MNLESILFTQGFGSRRQCRALIADARVSIGGAVCTDADADF-PTGDTTFSFTVDGVDWPY 84 Query: 56 QQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDD 114 ++H Y +LNKP GY CS D H +V L A + + GRLD DTTGL+L++DD Sbjct: 85 REHA--YLLLNKPAGYECSRDPQHHLSVFSLLPPQFAGRGVQCVGRLDQDTTGLLLLSDD 142 Query: 115 GQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQV 174 G++ H TSP+ K Y+ T P+ D GV L+ E +E + Sbjct: 143 GKFVHLFTSPKRKVPKVYVATTRHPIDDAQLSALRDGVLLNGEARPIAAVDVEARGDHTL 202 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 LT+ EG+YHQVKRM AA GN LHRERIGG+ L LA G ++ L E ++ S+ Sbjct: 203 ALTVMEGKYHQVKRMIAAAGNRCEALHRERIGGLALPEALARGAWQWLDETDLGSL 258 >UniRef50_C7GZ55 Pseudouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ55_9FIRM Length = 250 Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 80/249 (32%), Positives = 127/249 (51%), Gaps = 19/249 (7%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++K+IA+ SR A I+ RVTV G + + + +A DG P+ Q Sbjct: 1 MRINKYIAKCGICSRRKADELIKEGRVTVGGIPLLECGVNVDEDAVIAIDGRPIEIQKKT 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +NKP GYVC+ D +Y L + +L GRLD D+ GL+L+T+DG + + Sbjct: 61 VYIAMNKPCGYVCTVSDELGRRTVYDLLTDIDERLFTIGRLDKDSEGLILLTNDGDLAQK 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNE--------------KDLTKPAVL 166 + SP+ EK Y V + + ++ + G+ + E K TKPA + Sbjct: 121 LLSPKRKIEKNYEVVVRGVPGANDIKKLSGGITIDVEISQTKQNKPVKSIVKYHTKPAKI 180 Query: 167 EVITPTQ----VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPL 222 I Q + + I EG+ Q+++MF +G+ V++L R + GI L DL PGE+R L Sbjct: 181 FEIGQKQGDMKLSMIIKEGKKRQIRKMFDVIGHEVIKLKRVKFAGIEL-GDLRPGEFRHL 239 Query: 223 TEEEIASVV 231 +E+E+ S+ Sbjct: 240 SEDEVRSLC 248 >UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_1464 n=4 Tax=Bacteria RepID=Y1464_AQUAE Length = 249 Score = 130 bits (326), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 83/236 (35%), Positives = 129/236 (54%), Gaps = 10/236 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +R++KF+++ SR A + I RV V+GE+VR+ K+ PE D V DG P+ Q Sbjct: 4 VRINKFLSEAGVASRRKAEKLILEGRVKVNGEVVRSLGVKVNPEVDIVEVDGKPVKPQR- 62 Query: 60 PRYFMLNKPQGYVCSTD-DPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 RY +LNKP Y+ PD + L + + ++ GRLD +T GL+++T+DG+ + Sbjct: 63 KRYIILNKPCCYLTQLGRSPDGRKTIEELIKDIPERVFPVGRLDYNTEGLLILTNDGELA 122 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TPTQV 174 +RI PR+ K YL +E V T ++ +G++L E KP + ++ T + Sbjct: 123 NRILHPRYKLPKVYLALVEGKVDQKTLKRMKQGIEL--EDGFAKPDNIRIVRYEGKNTLL 180 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +T EGR H VKR A G+ V L R IG I L L+PG++R L + E+A + Sbjct: 181 EITFHEGRKHLVKRFLGAFGHKVKRLKRIAIGPIKL-GKLSPGKWRELNQGELAQL 235 >UniRef50_A8U4V7 Pseudouridine synthase n=10 Tax=Lactobacillales RepID=A8U4V7_9LACT Length = 239 Score = 129 bits (325), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 84/238 (35%), Positives = 131/238 (55%), Gaps = 12/238 (5%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 MRLDK + + SR R ++ +V V+G+ + + + P+ +V G P+ Q Sbjct: 1 MRLDKLLFETGFGSRRTVKRLLKSKQVQVNGQTIMVDSLNVDPQLQEVTVAGVPIDYQ-- 58 Query: 60 PR-YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAW--KLHAAGRLDIDTTGLVLMTDDGQ 116 P Y+ML+KP G V + D + TV+ + EP L GRLD DT GL+L+T++GQ Sbjct: 59 PHVYYMLHKPAGVVSAVSDAVNQTVIDLI-EPSQRVPGLFPVGRLDKDTEGLLLLTNNGQ 117 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TPT 172 +++ P+ K Y V + V DD F G+ + + + KPA L ++ T + Sbjct: 118 LGYQLLIPKKEVTKCYEVVVNERVTDDDQLAFTAGI-VFDGGVICKPAQLTILSQSDTES 176 Query: 173 QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +V L ISEG++HQVK+MF +VG V+ L R +G + LD L+ G YRPL EE+ ++ Sbjct: 177 RVLLEISEGKFHQVKKMFLSVGKKVIYLKRLSMGPLQLDKTLSLGSYRPLHAEELVAL 234 >UniRef50_B0SBU8 Pseudouridine synthase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SBU8_LEPBA Length = 243 Score = 129 bits (325), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 81/229 (35%), Positives = 119/229 (51%), Gaps = 6/229 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RLDK + +R+ +EI V V+G +V++ +K+ V Y L ++ Sbjct: 5 RLDKVLGNYGFGTRSDVKKEIYQGNVKVNGLVVKDPGYKITLTDIVVYYDETLNRKEF-Y 63 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEP-VAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 YFM+NK + +T+DP TV+ +L E L GRLD +T GL+L T DG +H Sbjct: 64 YFMMNKAPDCITATEDPREKTVMDYLSERHRNMNLFPIGRLDKETEGLLLFTTDGTLAHY 123 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT--- 177 TSP+H EK Y + +PV QF G+ L + T PA L + P+ + Sbjct: 124 YTSPKHFVEKEYYAEISAPVTAFDISQFESGITLDDGYK-TLPARLAIPDPSNPHIATVW 182 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 + EG+Y Q++RMF ++G V L R ++G + LD DL G YR LTE E Sbjct: 183 LREGKYRQIRRMFQSLGKEVQYLKRVKMGNLELDRDLEVGSYRELTEAE 231 >UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N1S2_9BACT Length = 241 Score = 128 bits (322), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 86/230 (37%), Positives = 121/230 (52%), Gaps = 8/230 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K ++ SR AG I+ RVTV+GE V F++ P V YDG P+ + Sbjct: 8 RLVKILSAAGIASRRGAGDLIKAGRVTVNGETVFEPGFRVAPGDRVEYDGVPVLAEERKV 67 Query: 62 YFMLNKPQGYVCSTDDP--DHPTV-LYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y MLNKP+GYVC+ DP D V L L P+ +L +AGRLD D+ GL+L ++DG + Sbjct: 68 YIMLNKPRGYVCTNADPHADLKAVDLIRLTPPL--RLFSAGRLDKDSEGLILFSNDGDYV 125 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 R+T PRH K Y V + EQ +GV E L K + +T+ Sbjct: 126 ARLTHPRHEILKVYQVRVRREFKPAELEQMRRGVLERGE--LLKVHAVSRCGDCTYLITL 183 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 +EG+ +++R+ AA+G+ L R +IG + L L G +R LT EIA Sbjct: 184 NEGKNREIRRLTAALGSPTRRLKRLQIGALRL-GGLPVGNWRELTPAEIA 232 >UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=Q65HX7_BACLD Length = 244 Score = 127 bits (320), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 130/233 (55%), Gaps = 12/233 (5%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K IA SR A I+ RVTV+G+ VR K+ + +G L + P Sbjct: 3 RLQKVIAHAGIASRRKAEELIKEGRVTVNGKTVRELGVKVSSSDRIEVNGVQLESEE-PV 61 Query: 62 YFMLNKPQGYVCST-DDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 YF+L KP+G + + DD V F E V +++ GRLD DT+GL+L+T+DG ++++ Sbjct: 62 YFLLYKPRGVISAVKDDKGRKVVTDFFTE-VEERIYPIGRLDYDTSGLLLLTNDGDFANK 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT------PTQV 174 + P++ KTY+ L+ + ++ +GV+L + K T PA +++++ + V Sbjct: 121 LMHPKYEINKTYVAKLKGIPLKENLKKLERGVRLEDGK--TAPAKVKLLSLDKKKQTSIV 178 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 ++TI EGR QV+RMF A+G+ V++L RE + L A L GE R LT E+ Sbjct: 179 QITIHEGRNRQVRRMFEAIGHEVLKLKREEYAFLNL-AGLKTGEKRELTPHEV 230 >UniRef50_C6VP86 Pseudouridine synthase n=4 Tax=Lactobacillaceae RepID=C6VP86_LACPJ Length = 246 Score = 127 bits (320), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 124/238 (52%), Gaps = 10/238 (4%) Query: 1 MRLDKFI-AQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG 59 MR+DKF+ A ++G +R R I+ +T +GE V + ++ P D + + + Sbjct: 1 MRVDKFLHAMRIG-TRTQVRRLIKDGHITANGEPVISGKQQINPGSDTVFLDDVQVRYQQ 59 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVL-YFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y+++NKP G + +T D TV+ F L GRLD DT G++++T+DG S Sbjct: 60 YFYYVMNKPVGVITATTDSAAKTVMDLFNTTDFRDDLFPVGRLDKDTEGILVITNDGALS 119 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI------TPT 172 H + SP HH K Y + + F G+ L + +L +PA E++ T Sbjct: 120 HDLLSPNHHVTKVYEAEVTGEITAAQLANFNDGITLKDGTEL-QPAQAEIVQFHEIENFT 178 Query: 173 QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +R+ I EG+YHQVKRM +G VV L R + G +TL L G YR LT++E+ ++ Sbjct: 179 TIRIMIHEGKYHQVKRMVGTLGERVVGLRRIKFGSLTLPVGLLAGNYRALTDDELTAL 236 >UniRef50_B1C6T1 Pseudouridine synthase n=2 Tax=Clostridiales RepID=B1C6T1_9FIRM Length = 238 Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 134/235 (57%), Gaps = 6/235 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 MR++K++A SR I +VTV+GE+VR + E D V G ++ Sbjct: 5 MRINKYLASCGVASRRKCEEIISRGKVTVNGEVVRELGTIINVEKDLVKVYGKEVSLDTK 64 Query: 60 PRYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y+MLNKPQG + ++ TV+ L + +L GRLD DTTGL+++T+DG ++ Sbjct: 65 KVYYMLNKPQGVISASKSKYGEETVVDLLGKK-EHRLFPVGRLDKDTTGLIILTNDGDFA 123 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEK-DLTKPAVLEVI-TPTQVRL 176 +++T P++ EKTY ++ V + ++ +GV + +K K ++++I + V + Sbjct: 124 YKLTHPKYEKEKTYEALVKGKVDSKSLDKLKQGVVIDGKKTSRAKVRLVKMIGVNSLVEI 183 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 T+ EGR QVK+M VG+ V++L+R G++L DL GEYR LT+ E++ ++ Sbjct: 184 TLIEGRKRQVKKMCEKVGHKVIKLNRTMENGLSL-GDLEIGEYRKLTKNEVSKLL 237 >UniRef50_A4S9F7 Predicted protein n=3 Tax=cellular organisms RepID=A4S9F7_OSTLU Length = 287 Score = 127 bits (318), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 90/233 (38%), Positives = 127/233 (54%), Gaps = 15/233 (6%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIV--RNAAFKLLPEH-DVAYDGNPLAQQH 58 RLD +++ SRA A R I VT DG R + KL DV DG L Sbjct: 49 RLDALLSRLGLTSRADAARFIAERVVTTDGARATERATSGKLKARAADVRVDGETLEDVD 108 Query: 59 GPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-----LHAAGRLDIDTTGLVLMTD 113 G +++K +G VCS D + +V L P W+ + + GRLD DT+GL+L+TD Sbjct: 109 GL-LIVMHKARGVVCSHDVREGTSVYDAL--PERWRRRKPSIESVGRLDKDTSGLLLLTD 165 Query: 114 DGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKG-VQLHNEKDLTKPAVLEVI-TP 171 DG H +T+P+ K Y V + P+ D E FA G + L E KPAV E++ Sbjct: 166 DGALVHALTTPKKEIGKWYRVKTDRPIPRDAVEVFASGELTLDGETRACKPAVCELMDDE 225 Query: 172 TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLD-ADLA-PGEYRPL 222 T+ RL ++EG++HQVKRMFA G V+ LHRE G +TL+ A ++ PG+++ L Sbjct: 226 TEARLRLTEGKFHQVKRMFAFFGCTVIGLHRESFGSLTLERAGVSEPGDFKTL 278 >UniRef50_Q01Z61 Pseudouridine synthase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Z61_SOLUE Length = 264 Score = 126 bits (317), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 81/231 (35%), Positives = 134/231 (58%), Gaps = 11/231 (4%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGPR 61 L++ ++ SR A + I G +V V+G++V N + P+HD V +G PL + Sbjct: 16 LERVFSKAGAGSRTDARKWISGGKVRVNGKVVLNPDHWVDPDHDKVTLEGKPL-KAATKS 74 Query: 62 YFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +L KP+GY+ + DP+ PTV L + W L GRLD+DT+GL+++T+D ++ R Sbjct: 75 YILLYKPKGYLTTYRDPEGRPTVYALLGDVGKW-LSPVGRLDLDTSGLLVLTNDNDFAER 133 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP----TQVRL 176 IT+P H KTY + + ++D+ E+ GV+L + T+PA ++ + T + + Sbjct: 134 ITNPEHKVPKTYQIKAATVLSDEQIERLRAGVELSD--GPTRPAEVKRLRDGPKHTFLEM 191 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 TI+EGR QV+RM AV + V +L R IG + + +L G++R LT +E+ Sbjct: 192 TITEGRNRQVRRMLEAVESKVSKLVRTAIGPVRI-GELPIGKWRNLTADEV 241 >UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7I2_9ACTN Length = 285 Score = 126 bits (316), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 80/252 (31%), Positives = 123/252 (48%), Gaps = 27/252 (10%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 MRL +F+A+ SR + + I RV V+G+ VR K++P++D V DG + Sbjct: 25 MRLQRFLARAGVASRRGSEKLISAGRVCVNGKQVRVLGTKVMPQYDHVTVDGKEYVLGND 84 Query: 60 PRYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y +LNKP + + DP P V + L GRLD DTTG++L T +G Sbjct: 85 HVYLLLNKPSQVLTTMSDPFGFPCVASLVPCDDYPGLFPVGRLDSDTTGVLLFTTNGNMG 144 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT-------- 170 +R+ P HH KTY+ +E + ++ ++G+ L E +T P + IT Sbjct: 145 NRLLHPSHHVWKTYVALIEGKLTSSQMQKLSQGIML--EDGMTSPCFIRTITQDEPCTHL 202 Query: 171 ---------------PTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLA 215 + L I EGR HQVKRM +G+ V++LHR + G + L+A + Sbjct: 203 DKNHSLFDDMRLNAASSLCELKIHEGRNHQVKRMLQEIGHPVIKLHRFQFGPLCLNAQIP 262 Query: 216 PGEYRPLTEEEI 227 G +R T++EI Sbjct: 263 LGSWRMCTQQEI 274 >UniRef50_C9RMP5 Pseudouridine synthase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RMP5_FIBSS Length = 234 Score = 126 bits (316), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 85/233 (36%), Positives = 124/233 (53%), Gaps = 6/233 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRN--AAFKLLPEHDVAYDGNPLAQQH 58 + L++ +A SR A +R V +DG+++ + FK PE + +G A Sbjct: 4 LTLERLLASMGFGSRKDARGLVRMGLVELDGKVLDDPFMEFKTRPEF-ITVNGEE-APTV 61 Query: 59 GPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEP-VAWKLHAAGRLDIDTTGLVLMTDDGQW 117 Y ML KP CS + DH V L E A + + GRLD D++GL+L+++ G + Sbjct: 62 EKLYVMLYKPTDVECSHNARDHKPVYDLLPERFTAMGIQSVGRLDADSSGLLLLSNQGDF 121 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT 177 H++ SP+ K Y VTL P D + GV L +E+ +EV + V ++ Sbjct: 122 IHKVESPKKGLWKKYRVTLARPFTDAQKAELLAGVMLKDERRPVLAREIEV-SGDAVDIS 180 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I EG YHQV+RMFAAVGNHV L R IG + LD L G +R LT+EE+A++ Sbjct: 181 IGEGLYHQVRRMFAAVGNHVETLERIAIGPVVLDRTLGEGGWRFLTDEEVAAL 233 >UniRef50_UPI000196C3BC hypothetical protein CATMIT_02354 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196C3BC Length = 234 Score = 125 bits (315), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 80/228 (35%), Positives = 125/228 (54%), Gaps = 12/228 (5%) Query: 1 MRL-DKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG 59 MRL D F+ + G + +G + V+ EIV + + V YD L H Sbjct: 1 MRLIDIFVLNKCGSKKQAKKAIKKG-LIQVNNEIVDEDMD--ITDETVIYDSKIL-DPHP 56 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 +Y++++KP GYVC+ D P ++ L + LH GRLD +TTGLV++T+D + Sbjct: 57 LKYYIIHKPSGYVCANKDSHDPCLISLLPDD---NLHYVGRLDRNTTGLVILTNDLKLRK 113 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 R+T P H +TY T +P+ D T F +G+ + + PA++E+ + + +T+ Sbjct: 114 RLTLPEFHIPRTYAFTCLNPLKDITP--FKEGITIDGDVKCL-PAIVEMTSEYEGVITLE 170 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 EGRYH++K+MF ++ N + LHR G I+L DL G YR LT+EEI Sbjct: 171 EGRYHEIKKMFLSLNNKITSLHRIMYGDISL-GDLPSGTYRTLTQEEI 217 >UniRef50_Q2LSY4 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSY4_SYNAS Length = 251 Score = 125 bits (315), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 83/234 (35%), Positives = 122/234 (52%), Gaps = 6/234 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 RL K +A+ SR A IR RV+V+ EIVR K E D + DG + + Sbjct: 4 RLQKILARSGVASRRKAEEMIREGRVSVNSEIVRELGSKADIERDEIRVDGKLICAEETK 63 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y MLNKP+GYV + DP P V++ L E + +L GRLD D+ GL+L+T+DG ++ Sbjct: 64 VYVMLNKPRGYVTALSDPQKRPLVIHLLPE-LGVRLFPVGRLDYDSEGLLLLTNDGGFAQ 122 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT-- 177 R+ PR+ KTY V + + + KG++L + K LE I P LT Sbjct: 123 RVQHPRYRISKTYRVKISGRLNAAEFNRLQKGLELEDGKFAPDEVALEEINPKSSWLTMK 182 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 ISEGR ++R F +G+ V+ L R + + L +L G+YR L E+ ++ Sbjct: 183 ISEGRNRVIRRAFEQLGHEVLRLIRTAVADLHL-GNLREGDYRLLKGWEVQQLL 235 >UniRef50_A1KUC7 Pseudouridine synthase n=29 Tax=Neisseriaceae RepID=A1KUC7_NEIMF Length = 230 Score = 125 bits (314), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 84/225 (37%), Positives = 117/225 (52%), Gaps = 7/225 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIV--RNAAFKLLPEHDVAYDGNPLAQQH 58 M+L K++ Q SR I G V ++G + +A + DG + Sbjct: 1 MKLIKYLQYQGIGSRKQCQWLIAGGYVFINGTCMDDTDADIDSSSVETLDIDGEAVTVVP 60 Query: 59 GPR-YFMLNKPQGYVCSTDDPDHPTVLY--FLDEPVAWKLHAAGRLDIDTTGLVLMTDDG 115 P Y MLNKP+ Y S P H ++ F D + A GRLD DTTG++L+T+DG Sbjct: 61 EPYFYIMLNKPEDYETS-HKPKHYRSVFSLFPDNMRNIDMQAVGRLDADTTGVLLITNDG 119 Query: 116 QWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVR 175 + +H +TSP K Y VTL+ P + E GV LH+E + A + PT + Sbjct: 120 KLNHNLTSPSRKIPKLYEVTLKHPTGETLCETLKNGVLLHDENETVCAADAVLENPTTLL 179 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYR 220 LTI+EG+YHQVKRM AAVGN V LHR R + + +L PGE++ Sbjct: 180 LTITEGKYHQVKRMIAAVGNRVQHLHRRRFAHLETE-NLKPGEWK 223 >UniRef50_Q03AT5 Pseudouridine synthase n=8 Tax=Lactobacillus RepID=Q03AT5_LACC3 Length = 236 Score = 125 bits (313), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 92/234 (39%), Positives = 133/234 (56%), Gaps = 15/234 (6%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDK+++ SR IR RV V G+++ + + +LP +A + N AQ GP Sbjct: 1 MRLDKYLSHLQFGSRKEVKALIRDKRVRVAGDLITDPGYNVLP--GIAVEVND-AQADGP 57 Query: 61 RY--FMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK--LHAAGRLDIDTTGLVLMTDDGQ 116 +++NKP G + +T+DP TVL + P ++ L+ GRLD DTTGL+L+T DG Sbjct: 58 LEVDYLMNKPAGVITATEDPTQSTVLDLI-RPHDYRPGLYPVGRLDKDTTGLLLLTTDGN 116 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP----T 172 H + SP H KTY TL + D ++ G+ L KD T V+ P Sbjct: 117 LGHALLSPNRHIAKTYAATLAKTLTADMKQRLETGIDL---KDFTTAPAQVVVLPDTDGK 173 Query: 173 QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 ++++TI+EG++HQVKRM AV N V L R +G ++L ADLA GEYR LT++E Sbjct: 174 RIQITITEGKFHQVKRMLLAVDNEVTALTRIAMGPLSLPADLAAGEYRALTDDE 227 >UniRef50_B5YJH7 Pseudouridine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJH7_THEYD Length = 237 Score = 125 bits (313), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/235 (33%), Positives = 131/235 (55%), Gaps = 11/235 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 RL K ++ SR A I+ RVTV+G+I K PE D + DG L + Sbjct: 4 RLQKILSDYGIASRRHAEELIKEGRVTVNGQIA-VIGQKADPEKDYIKVDGKLLIKPEPK 62 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y+ KP+ + + DP PT+ F+ + + ++++ GRLD D+ GL+L+T+DG+ ++ Sbjct: 63 VYYAFYKPRKVITALLDPQGRPTIRDFI-KGIKFRIYPVGRLDFDSEGLLLLTNDGELAY 121 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ----VR 175 ++ P EKTY+V ++ V +T E+ KG+++ E L P + ++ + ++ Sbjct: 122 KVMHPSSQIEKTYMVKVDGIVEPETIEKLRKGIKI--EGKLAVPVSVHLVKKLKANSWIK 179 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +T+ EGR Q+++M VG+ V+ L R I G+ L DL PG+ RPLT+EEI + Sbjct: 180 ITLHEGRKRQIRKMLERVGHPVIRLIRIAIDGVKL-GDLKPGQLRPLTKEEIEKL 233 >UniRef50_UPI0001693918 pseudouridylate synthase n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693918 Length = 249 Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 81/237 (34%), Positives = 127/237 (53%), Gaps = 11/237 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDV-AYDGNPLAQQHGP 60 RL K +A SR I RV V+ ++V K+ P DV DG + Q Sbjct: 4 RLQKVLAAAGVASRRKCEEIILAGRVEVNDKVVSTLGVKVNPHQDVIKVDGRAIQNQEKI 63 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y + NKP+G + S DP+ V+ + + +++ GRLD DT GL+++T+DG++++ Sbjct: 64 -YILFNKPKGVITSVSDPEGRRVVGDFLKGIKERVYPVGRLDYDTEGLLILTNDGEFANM 122 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEV--ITPTQ----V 174 +T PRHH KTY T++ E+ +GV+L E +T PA +E I P + + Sbjct: 123 VTHPRHHVSKTYHATVKGVPHGSVLEKLREGVKL--EDGMTAPAEVEYHDIDPDKKQSVI 180 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 +TI EG+ QV+RMF AVG V L R + G I L L G++R + +EE+ +++ Sbjct: 181 SITIYEGKNRQVRRMFEAVGYPVTRLKRVKFGSIPL-VGLPRGKFRRMRKEEVQALL 236 >UniRef50_C0QWY7 Pseudouridine synthase n=2 Tax=Brachyspira RepID=C0QWY7_BRAHW Length = 229 Score = 124 bits (312), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 78/231 (33%), Positives = 127/231 (54%), Gaps = 6/231 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL+K+IA SR A R I+ V V+G I N A ++ E+D + + + Sbjct: 1 MRLNKYIASLNLASRREADRLIQNGNVKVNGIINTNPATQV-DEND-KIECSIEQYKENK 58 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y LNKP+GYV S++ + + Y L + ++ GRLD D++GL+L T+DG ++ + Sbjct: 59 IYIKLNKPRGYVVSSNKNEGKPI-YNLIKKDFDNIYPVGRLDKDSSGLILFTNDGVFAKQ 117 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 I +CEK Y V ++ + D ++ G+ L +K KPA ++ + + ++E Sbjct: 118 IIGENTNCEKEYYVRVDDNIPDGALQKLEYGISLDGQK--LKPAKVKRVNKNSFHIILTE 175 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 G+ Q++RM VG V+ L R RI GI L+ DL G ++ LT+EEI S++ Sbjct: 176 GKNRQIRRMCQKVGFEVIILKRLRISGILLE-DLKEGTFKSLTKEEIESIL 225 >UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=C8WXC0_ALIAD Length = 273 Score = 124 bits (311), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 85/233 (36%), Positives = 120/233 (51%), Gaps = 12/233 (5%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 RL K +A SR I RV+VDGEIV K+ P +A DG P+ + P Sbjct: 3 RLQKVLAHAGVASRRKCEELILAGRVSVDGEIVTQLGAKVDPSRQRIAVDGVPIELEQ-P 61 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 +LNKP Y+ + DP + L P+ +++ GRLD DT+GL+L T+DG+ + R Sbjct: 62 VVLVLNKPVAYLSTVSDPLGRRTVMQLLPPIRERVYPVGRLDYDTSGLLLFTNDGELTQR 121 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ------- 173 + P EK Y V++ V +T +GV+L E +T PA +EV+ Sbjct: 122 LLHPSREIEKVYRVSVRGIVDRETRRALMEGVEL--EDGVTAPAKVEVLRQADREDGVAV 179 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 V L I EGR QV+RMF +G V+ L R G ++L L GE+R LT+EE Sbjct: 180 VHLAIHEGRNRQVRRMFERLGLPVLRLKRIAFGPVSL-GHLKTGEWRALTQEE 231 >UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX41_SYNWW Length = 239 Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 82/236 (34%), Positives = 130/236 (55%), Gaps = 10/236 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL K++A+ SR A R I +V V+ + + AF L P V + G + +Q Sbjct: 1 MRLAKYLAESGISSRRQAERLITQGKVKVNDKTITELAFTLKPGDRVEFAGK-IIEQTDK 59 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +L+KP GY+ S DP P V+ L V ++ GRLD DT GL+L+++DG++S+ Sbjct: 60 IYLLLHKPAGYISSLADPQGRPRVIDLLS-AVNTRVFPVGRLDYDTEGLLLLSNDGEFSN 118 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ----VR 175 +T PR+ K Y ++ V DT Q +GV L E +T PA + +++ + + Sbjct: 119 LMTHPRYLIPKKYEAWVQGLVKPDTIRQLEQGVAL--EDGITAPARVRLLSSKKGQSLLE 176 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 L I EG+ Q+KRM AVG+ V +L R + +TL+ + G++R LT E+ S++ Sbjct: 177 LEIHEGKKRQIKRMCLAVGHRVTKLKRTALAFLTLEG-VPRGQFRFLTASEVESLI 231 >UniRef50_D0U645 Pseudouridine synthase n=1 Tax=uncultured actinobacterium RepID=D0U645_9ACTN Length = 237 Score = 124 bits (311), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 124/232 (53%), Gaps = 6/232 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 MRL+K IA SR A I RV V+G IVR K PE D V DG + + Sbjct: 4 MRLNKIIADAGITSRRGADELIEDGRVAVNGIIVREMGSKFDPEMDKVMVDGETITRTLT 63 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y L+KP+G + + DP+ P++ F+D +L GRLD D+ GL+L+T+DG + Sbjct: 64 KSYLALHKPKGVLSTMFDPEGRPSLDDFIDLR-KERLFHVGRLDKDSEGLILLTNDGDLT 122 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 R T P EKTY++ + + + KGV+L E + + + ++P + ++I Sbjct: 123 FRATHPSFGLEKTYIIEFDGILPTGVDKVLLKGVEL--EDGMGRVLTFKQLSPKWIEVSI 180 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EGRYH ++R+ AVG +V+ L R + G I+L D G +R L + E+ ++ Sbjct: 181 HEGRYHIIRRLMEAVGVNVLRLIRTKFGPISL-GDTPEGRWRDLNDGELMNL 231 >UniRef50_C7LZX4 Pseudouridine synthase n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZX4_ACIFD Length = 254 Score = 124 bits (310), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 123/217 (56%), Gaps = 8/217 (3%) Query: 14 SRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGPRYFMLNKPQGYV 72 SR + IR RV ++GE+ A ++ P D V +DG +A + Y++LNKP+G V Sbjct: 19 SRRVLEDAIRDGRVRINGEVATIGA-RVRPGVDRVEFDGLEIATEEQREYWLLNKPRGVV 77 Query: 73 CSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKT 131 S DP+ PTV + +++ GRLD+D+ GL+++T+DG ++++T PR H K Sbjct: 78 SSVVDPEGRPTVRSLV--ATTSRVYPVGRLDVDSEGLLILTNDGPLTYQLTHPRFHVPKE 135 Query: 132 YLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEGRYHQVKRMFA 191 YLV ++ PV + +GV++ E L + + + + P VR+ ++EGR Q++RM Sbjct: 136 YLVWVDRPVPRRLGRELREGVEVDGE--LLRASSVGTVGPRLVRIVLTEGRNRQIRRMVG 193 Query: 192 AVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 AVG V L R RIG + +D L PG R L E+A Sbjct: 194 AVGLSVERLVRVRIGPL-VDPHLPPGVARRLEPRELA 229 >UniRef50_Q55578 Uncharacterized RNA pseudouridine synthase slr0361 n=21 Tax=Cyanobacteria RepID=Y361_SYNY3 Length = 249 Score = 123 bits (309), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 85/239 (35%), Positives = 135/239 (56%), Gaps = 16/239 (6%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 R+ K ++Q SR A I RV+V+G++ N K P+ D ++ DG + + P Sbjct: 4 RIQKLLSQWGIASRRHAEEMILAGRVSVNGKVA-NLGDKADPQQDFLSVDGKQIKADNRP 62 Query: 61 R--YFMLNKPQGYVCSTDDP-DHPTVLYFLDEPV--AWKLHAAGRLDIDTTGLVLMTDDG 115 R Y ++NKP+ + + DDP TVL L + + LH GRLD ++TG +L+T+DG Sbjct: 63 RDIYLLVNKPRDVLSTCDDPRGRKTVLDLLPQDLQRGKGLHPVGRLDRNSTGALLLTNDG 122 Query: 116 QWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ-- 173 + + R+T PR+H KTY V LE +D+ E++ G+ L +K L PA LEVI+ + Sbjct: 123 ELTLRLTHPRYHLPKTYDVWLEGNPSDEDLEKWRSGMMLDGKKTL--PATLEVISENKDQ 180 Query: 174 --VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDAD---LAPGEYRPLTEEEI 227 + +T++EGR Q++R+ +G V++LHR IG + L L G++R L+ EI Sbjct: 181 IHLLVTLTEGRNRQIRRLAEELGLTVLKLHRRTIGPLQLHTRGKVLGSGQFRFLSPAEI 239 >UniRef50_B1XJP9 Pseudouridine synthase n=3 Tax=Chroococcales RepID=B1XJP9_SYNP2 Length = 259 Score = 123 bits (309), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 86/237 (36%), Positives = 133/237 (56%), Gaps = 10/237 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 R+ K +A+ SR A + I RVT++G+ V+ + PE D + DG PL P Sbjct: 4 RVQKILARWGIASRRGAEKLILAGRVTLNGKPVQ-LGDQADPEGDRLCVDGKPLKATERP 62 Query: 61 R--YFMLNKPQGYVCSTDDPD-HPTVLYFLDEPV--AWKLHAAGRLDIDTTGLVLMTDDG 115 R Y++++KP+G V + DP TVL L P+ +H GRLD +TG +L+T+DG Sbjct: 63 RHYYYLIHKPKGVVSTCADPKGRSTVLDLLPPPLRQGKGIHPIGRLDAQSTGALLLTNDG 122 Query: 116 QWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT--PTQ 173 ++ +T PR+H KTY V L+ V + +Q+ +GV L + + L L+ IT T Sbjct: 123 NFTLALTHPRYHIPKTYRVWLKGKVPEHVLDQWRQGVMLGDRRTLPTQIHLKTITQDKTC 182 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + + ++EGR Q++R+ +G VV+LHR IG + L DL G+ RPLT+ EI + Sbjct: 183 IDIMLTEGRNRQIRRVAEQLGFPVVKLHRLAIGNLHL-GDLQRGQARPLTKAEIKQL 238 >UniRef50_B0SGV7 Pseudouridylate synthase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SGV7_LEPBA Length = 247 Score = 123 bits (308), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 76/242 (31%), Positives = 136/242 (56%), Gaps = 16/242 (6%) Query: 1 MRLDKFIAQ-QLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG 59 MR++ F+A+ LG R + + G RV ++G + + +F++ E + +DG P+ ++ G Sbjct: 1 MRINAFLAKLGLGSRRKVEELVLAG-RVKINGSTITDLSFQVNEEDSILFDGKPVTKEEG 59 Query: 60 ----PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDG 115 P+ NKP G++ S +D H ++ L K + AGRLD+D+ GL+L++ DG Sbjct: 60 SDSRPKIIAFNKPPGFLTSHEDKHHENTIFTLLPESFQKYNYAGRLDLDSRGLILLSIDG 119 Query: 116 QWSHRITSPRHHCEKTYLVTLESPVA-DDTAEQFAKGVQLHNEK---DLTKPA-VLEVIT 170 + ++T P++ +K Y+++L+ PV+ AE+F GV+ E KPA V T Sbjct: 120 NFIQKVTHPKNKIDKEYIISLKQPVSWKKIAEEFMLGVREGGETLRALAVKPANVFPEKT 179 Query: 171 P----TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITL-DADLAPGEYRPLTEE 225 P + + + + EG+ Q++RM V++L+R RIG + L + DL G+Y+ +TEE Sbjct: 180 PPGFTSYLSIVLKEGKKRQIRRMCKTKDLVVLDLYRIRIGKLDLRNFDLLEGKYKVVTEE 239 Query: 226 EI 227 ++ Sbjct: 240 QV 241 >UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteraceae RepID=A8ZRV1_DESOH Length = 241 Score = 122 bits (307), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 83/232 (35%), Positives = 122/232 (52%), Gaps = 6/232 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +RL KF++ SR A I RV V+G++V K+ PE D V +DG+ + Sbjct: 10 IRLQKFLSGAGVCSRRRAEVYIAEGRVAVNGQVVTELGTKVDPESDDVMFDGHRVTLAES 69 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y LNKP GYV S TV+ + V ++ GRLD + GL+LMT DG Sbjct: 70 HVYIALNKPPGYVTSCLQKQETTVMELV--AVDQRVFPVGRLDKPSCGLLLMTSDGGLHQ 127 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 R++ P EK Y V + PV+D + +G+ + K T+PA ++ ++ + + + Sbjct: 128 RLSHPSFDHEKEYDVACDRPVSDADLDAMRRGMVITGRK--TRPAKVKRLSDRRFLIILQ 185 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 EGR Q++RM +GN VV L R RI I L DLA G +R LTEEE +++ Sbjct: 186 EGRNRQIRRMAEMLGNRVVLLRRIRIAHIHL-GDLAEGRWRYLTEEEKKALL 236 >UniRef50_C8P160 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P160_ERYRH Length = 262 Score = 122 bits (306), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 73/231 (31%), Positives = 125/231 (54%), Gaps = 8/231 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+K+I+ SR A R I V +DG + ++LP V +GN + Sbjct: 26 LRLNKYISDSGYCSRRQADRFIAEGVVAIDG-VTATVGQQVLPGQRVTVEGNHVTIDDEK 84 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y LNKP+G C+TD + F++ P + GRLD D++GL+L+T+DG ++ Sbjct: 85 VYIALNKPRGITCTTDGAIEGNISDFMNYPKM--IFPIGRLDKDSSGLILLTNDGDIVNK 142 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEK----DLTKPAVLEVITPTQVRL 176 I + +K Y+V++ + +D + +KGV+++N++ +T P+ +E + P R+ Sbjct: 143 ILREEYGHDKEYIVSVNKTIDEDFITKMSKGVEIYNQQTHRMQVTNPSDVEQVAPKTFRI 202 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 +++G Q++RM A+G V L+R RI I L DL GE+R L+ E+ Sbjct: 203 VLNQGLNRQIRRMTKALGFKVTTLNRVRIMNINL-GDLKVGEWRYLSVHEL 252 >UniRef50_C8QZD4 Pseudouridine synthase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZD4_9DELT Length = 240 Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 80/232 (34%), Positives = 118/232 (50%), Gaps = 10/232 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL KF+A+ SR A I RV VDG V + PE V +DG P+ Sbjct: 4 RLQKFLARAGIASRRKAEEYIAQGRVQVDGRPVAQMGLTIDPERQQVTFDGQPVLPPSRK 63 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 +LNKP GYV + DP P V ++EP +L GRLD+DT G +L+T+DG+ + Sbjct: 64 LTVLLNKPAGYVTTMADPQGRPIVTSLINEP-GLRLFPVGRLDLDTEGALLLTNDGELAQ 122 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ----VR 175 I P +TY T++ + +Q +G+ L + T PA + + Q + Sbjct: 123 NILHPSRQINRTYHATVKGRPNREALQQLRRGIMLEGRR--TWPARIRELRRNQESTTLE 180 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 + I EGR QV++MFAA+ + V++L R GG+ L L G YR L+ E++ Sbjct: 181 VIIHEGRKRQVRKMFAAINHPVLQLKRVAYGGLRL-GSLPTGRYRRLSPEDL 231 >UniRef50_C8WGQ8 Pseudouridine synthase n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGQ8_EGGLE Length = 282 Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/265 (33%), Positives = 126/265 (47%), Gaps = 36/265 (13%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 MRL KF+A+ SR + + RVTV+G++V K+ P D VA DG + G Sbjct: 11 MRLQKFLARAGAASRRGSENLMTAGRVTVNGKVVTELGSKVDPLVDEVAVDGAVVRLADG 70 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 P ML+KP G+V + DP TV + L GRLD DTTGL+L + DG+ Sbjct: 71 PVTIMLHKPAGFVTTMSDPQGRRTVAELVPTERYPGLFPIGRLDFDTTGLLLFSTDGELG 130 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQL-------------------HNEKD 159 + + P+HH K YL +E + +G++L H E+ Sbjct: 131 NGLLHPKHHVTKRYLACVEGRPTERDLALLRRGIELDDGPTQPADVRVVEGGAARHAERL 190 Query: 160 LTKPAVLEVITPTQ--------------VRLTISEGRYHQVKRMFAAVGNHVVELHRERI 205 L PA + + + VRL I EGR QVKRM AAVG+ V+ LHR+ Sbjct: 191 LEIPAAVPPRSSKEYAAVCEGRATRRSIVRLGIREGRKRQVKRMLAAVGHPVLALHRDSF 250 Query: 206 GGITLDADLAPGEYRPLTEEEIASV 230 G + L DL G +R L EE+A++ Sbjct: 251 GPLEL-GDLPRGAWRALDAEEVAAL 274 >UniRef50_C5EVC9 Pseudouridine synthase n=6 Tax=Clostridiales RepID=C5EVC9_9FIRM Length = 294 Score = 121 bits (304), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 122/232 (52%), Gaps = 12/232 (5%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG--- 59 L+K+++Q SR A R I +V VDG K+ P V DG P+ G Sbjct: 36 LNKWLSQMGVCSRREADRLIEAGKVWVDGSPA-AMGQKVKPGQKVVCDGVPVNGGSGADS 94 Query: 60 ----PRYFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDD 114 P ++NKP+G VC+T D D ++ +LD P +++ GRLD D+ GL+LMT+ Sbjct: 95 RKPKPVLLVVNKPRGIVCTTSDKDRAMNIVEYLDYP--ERIYPVGRLDKDSEGLLLMTNQ 152 Query: 115 GQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQV 174 G ++I + EK Y+VT++ P+ DD ++ AKG+ L + +T+P ++ + Sbjct: 153 GDLVNKIMRSGNAHEKEYIVTVDRPLTDDAMDRMAKGIYLRELETVTRPCKVKRVDGKTF 212 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 + +++G Q++RM A G HV L R RI I LD L G R + +EE Sbjct: 213 SIILTQGLNRQIRRMCEACGCHVERLVRVRIMNIRLDG-LETGASREVGQEE 263 >UniRef50_A7HC79 Pseudouridine synthase n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HC79_ANADF Length = 354 Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 82/234 (35%), Positives = 121/234 (51%), Gaps = 6/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +RL K++A+ SR A I RV V+ V K+ P D V DG +++ Sbjct: 12 VRLQKYLAEAGVASRRKAEELILAGRVKVNARAVTVLGSKVDPARDLVTVDGRLVSRSET 71 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y++L KP G V + DP+ PT L +L V ++ + GRLD D G VL TDDG+ + Sbjct: 72 RSYYLLYKPPGCVTTASDPEGRPTALEYL-RGVKERVFSVGRLDFDAEGAVLFTDDGELA 130 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQV--RL 176 +R+ PR+ +TYLV + E+ GV+L + AV V R+ Sbjct: 131 NRLAHPRYGHRRTYLVKVRGEPPPAALERLVAGVRLEDGPARALEAVPHERAERNVWIRV 190 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EGR+H VKR+ AVG V L+R GGIT++ L PG++RPL E+ ++ Sbjct: 191 VVGEGRFHLVKRLCEAVGLQVQRLYRPEFGGITVEG-LRPGQFRPLAPVEVRAL 243 >UniRef50_A6GU42 Pseudouridine synthase n=1 Tax=Limnobacter sp. MED105 RepID=A6GU42_9BURK Length = 214 Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 68/164 (41%), Positives = 97/164 (59%), Gaps = 5/164 (3%) Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEP-VAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 +Y +++KP GY S +P+V L + + L AAGRLD+DTTGL+L +DDGQ+ H Sbjct: 34 KYVLMHKPAGYETSHLPSHNPSVFDLLPKHYIKRGLQAAGRLDVDTTGLLLFSDDGQFIH 93 Query: 120 RITS----PRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVR 175 R+ S + EK Y VT P +D ++ +GV L +E ++ + ++ ++ Sbjct: 94 RLISGKVGTKQEIEKIYEVTGARPFSDLQLQRLLEGVDLDDEPEIIYASRATLLADGRLE 153 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEY 219 L I+ G+YHQVKRM AAVGNHV LHR +G L ADLA G Y Sbjct: 154 LGITTGKYHQVKRMVAAVGNHVDGLHRRSVGPYELPADLAAGSY 197 >UniRef50_B4D966 Pseudouridine synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D966_9BACT Length = 237 Score = 120 bits (302), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 78/233 (33%), Positives = 130/233 (55%), Gaps = 10/233 (4%) Query: 1 MRLDKFIAQQ-LGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG 59 MRL++F+A LG R + I +V ++G++V + + ++ P D G+ L + Sbjct: 1 MRLNRFLASAGLGSRRGVE-ELITSGQVRINGQVVTDLSTQVGPT-DAVKVGSRLLRTEQ 58 Query: 60 PRYFMLNKPQGYVCS-TDDPDHPTVLYFLDEPVAW-KLHAAGRLDIDTTGLVLMTDDGQW 117 +LNKP GYVC+ +D+ D T+ L P W +++ GRLD D+ GL+L+T+DG Sbjct: 59 KITVLLNKPAGYVCTASDERDRKTIFDLL--PANWPRVYHVGRLDKDSEGLLLVTNDGDL 116 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT 177 S +T PR+ EK Y V L+ P E+ KG + + K +E++ PT + LT Sbjct: 117 SLALTHPRYKIEKEYEVLLDKPFNPQDREKLLKGFHIIGGR--AKAERVEILNPTHLSLT 174 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +++G Q++ M +G V L R R+G + + ++ PGE+R LT +EIA++ Sbjct: 175 LTQGIKRQIRLMLYDLGYEVERLARIRLGPLKI-GEMRPGEWRLLTSKEIAAL 226 >UniRef50_A5IYZ4 16S rRNA uridine 516 pseudouridylate synthaseand related pseudouridylate synthase n=1 Tax=Mycoplasma agalactiae PG2 RepID=A5IYZ4_MYCAP Length = 232 Score = 120 bits (301), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 123/227 (54%), Gaps = 4/227 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +R++K+IA +SR +++ + V+ ++ K+ E DV N + + Sbjct: 4 IRIEKYIADLTNLSRNEVKNKLKKKAIKVN-RVILTKLIKIDSEKDVVELDNSILKYEKF 62 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 +Y+M NKP ++C+ D + T+ + P A K + GRLD DT GL+++++DGQ HR Sbjct: 63 QYYMFNKPANFICANSDSEEATIFDIVGLP-AEKFFSFGRLDKDTEGLLILSNDGQMCHR 121 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 + SP++H K Y V ++ + D+ N+ + +LE+I LTI E Sbjct: 122 LLSPKNHVPKKYYVKVDKKI--DSEILLNHSPIKINDDFIVSKYILELIDDKGCFLTIYE 179 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 G++HQ+KRMF ++G V+ L R G + LD +L G+ R L+E+E+ Sbjct: 180 GKFHQIKRMFGSLGFSVLYLKRVEFGKLKLDNNLKLGQVRKLSEDEV 226 >UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIA1_RHOM4 Length = 268 Score = 120 bits (300), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 78/232 (33%), Positives = 127/232 (54%), Gaps = 8/232 (3%) Query: 1 MRLDKFIAQQLGV--SRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQH 58 +RL++++A+ GV SR A I +V V+G++ + ++ P+ V +G + Q Sbjct: 10 IRLNRYLARA-GVCPSRRKADELIASGQVRVNGQVAQ-LGMRVGPDDIVEVNGVRVVPQT 67 Query: 59 GPRYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWK--LHAAGRLDIDTTGLVLMTDDG 115 Y ++NKP + + DD TVL ++ P K L GRLD +TTG++L+T+DG Sbjct: 68 QALYILMNKPHDTITTCDDERGRRTVLDLINLPPEQKNGLFPVGRLDRNTTGVLLLTNDG 127 Query: 116 QWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVR 175 + ++R+ PR+ EK Y+ PV + AEQ +GVQL + + P ++ Sbjct: 128 ELANRLMHPRYRVEKIYVARTARPVKPEEAEQLRRGVQLEDGPARAVQVAVNPADPHEIA 187 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 L I EGR QV+RM A+G+ VV+L R G+T + PG++R LT+ E+ Sbjct: 188 LMIYEGRNRQVRRMLEAIGHEVVQLKRTHYAGLTTKG-VRPGKWRRLTDAEV 238 >UniRef50_B8G2X0 Pseudouridine synthase n=3 Tax=Bacteria RepID=B8G2X0_CHLAD Length = 567 Score = 119 bits (299), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 86/235 (36%), Positives = 125/235 (53%), Gaps = 11/235 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 RL K +A SR I RVTV+G +V ++ EHD V DG PL Sbjct: 5 RLQKVLASAGIASRRDCEELIAAGRVTVNGRVVTVPGTRVDLEHDEVLVDGQPLRMPAKR 64 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y ML+KP G V + +DP PTV+ +D P ++ GRLD+D+ GL+L+TDDG+ ++ Sbjct: 65 TYIMLHKPAGVVSTAEDPHGRPTVVDLVDVPA--RVFPVGRLDLDSEGLILLTDDGELAY 122 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT----QVR 175 +T P EK Y V L+ + D + GV L E +T PA +E++ T VR Sbjct: 123 ALTHPSFEVEKEYRVLLDRALTPDALRSWRNGVLLEGE--MTAPAWVELLETTPEGVWVR 180 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + + EGR Q++ + +G V L R R G + L DL P +R LT+EE+A++ Sbjct: 181 IVLREGRKRQIRAVAKLLGYEVRRLVRVREGPLQL-GDLPPRAWRHLTDEEVAAL 234 >UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodictyon group RepID=Q3B289_PELLD Length = 250 Score = 119 bits (298), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 72/231 (31%), Positives = 129/231 (55%), Gaps = 7/231 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +R+++++A SR A + + RVT++G + K++P D V DG+ AQ G Sbjct: 13 VRINRYLAMCGIASRRAADQMVLEGRVTINGVLASEPGVKVVPGKDEVIVDGSKFAQPEG 72 Query: 60 PR-YFMLNKPQGYVC-STDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 + Y + NKP+ + S+D+ + VL F+D V +++ GRLD TTG++L+T+DG Sbjct: 73 RKIYILFNKPRNVITTSSDERNREMVLDFID--VNERVYPVGRLDRKTTGVLLLTNDGML 130 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP-TQVRL 176 ++++ P + +K Y+ L++P + G++L + + P +++ +QV + Sbjct: 131 ANKLMHPSSNVKKEYIAVLDAPFPQASLPLLTGGMRLSDTGEKVSPCQAKIMGDGSQVWI 190 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 +I EG+ HQV+RMF +G V L R G+T+ DL G++R LT E+ Sbjct: 191 SIHEGKNHQVRRMFKTLGFEVTRLDRPTYAGLTV-GDLRRGQWRHLTRTEV 240 >UniRef50_UPI0001BCEF2E pseudouridine synthase n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCEF2E Length = 296 Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 85/233 (36%), Positives = 116/233 (49%), Gaps = 12/233 (5%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHGP 60 RL K ++ SR A IR RV VDG V K P H + D P+ Sbjct: 4 RLQKILSNAGVASRRAAEDLIRAGRVAVDGVAVTELGRKFDPANHTITVDSKPIHSDEKR 63 Query: 61 RYFMLNKPQGYVCST-DDPDHPTVLYFL-DEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y +LNKP+GY+ + DD TVL L D P +L+ GRLD DT G++L+T+DG + Sbjct: 64 FYILLNKPRGYLSTARDDRGRKTVLDLLPDFPA--RLYPVGRLDADTEGVLLITNDGAIT 121 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP----TQV 174 + PR +K Y + PV + + +G+ L E +T A L ++ T V Sbjct: 122 QGLLHPRFEIDKVYHAEVAGPVTEGGLTRLRRGILL--EDGMTASAKLRILRADKGYTVV 179 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 I EGR QV+RMFAA+G V L R R +TL L+ G +R LT +EI Sbjct: 180 ETIIHEGRNRQVRRMFAAIGCRVCALRRVRFAMLTLRG-LSCGSFRHLTRDEI 231 >UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae RepID=Q7MMX9_VIBVY Length = 347 Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 125/230 (54%), Gaps = 6/230 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL+K+I++ SR A + I RVT++G+ K+LP DV DG P+A + P Sbjct: 8 RLNKYISETGFCSRREADKLIEQGRVTINGKQP-EMGTKVLPGDDVCVDGKPVAAKEKPV 66 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y LNKP G C+T+ ++ F+ ++ GRLD + GL+ +T+DG ++I Sbjct: 67 YIALNKPTGITCTTERNIPGNIVDFIGH--KKRIFPIGRLDKPSDGLIFLTNDGDIVNKI 124 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEG 181 +H EK Y+V ++ P+ + + + GV + + +T P + T R+ +++G Sbjct: 125 LRAGNHHEKEYVVRVDKPITPEFIKAMSSGVNILDT--VTLPCKVTQETKFSFRIVLTQG 182 Query: 182 RYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 Q++RM A+G V +L R RI I+LD + G++R LT++E+ ++ Sbjct: 183 LNRQIRRMCEALGYEVFKLRRVRIMNISLDG-IPNGKWRYLTDDEVTEIL 231 >UniRef50_B9KY92 Pseudouridine synthase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KY92_THERP Length = 282 Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/233 (36%), Positives = 124/233 (53%), Gaps = 8/233 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL + +A SR A I RVTVDG +VR K+ PE ++ DG PL + Sbjct: 9 RLQRVLAAHGVASRRKAEELILAGRVTVDGVVVRELGRKVDPERQEICVDGKPLHSEPR- 67 Query: 61 RYFMLNKPQGYVCST-DDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 RY +L+KP GY+ +T D+ TVL + P ++ GRLD D++GL+L+T+DG + Sbjct: 68 RYIVLHKPVGYITTTADEYGRKTVLDLVQVP--ERVVPVGRLDRDSSGLLLLTNDGDLIY 125 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP--TQVRLT 177 RIT PR+ EK Y V ++ + E +GV + + + P T R+ Sbjct: 126 RITHPRYELEKEYEVLVDGFPPPEVEEALRRGVPVDGRPVRIRRLEAIRVEPQGTVYRVV 185 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I EGR ++R+F VG V+ L R R+G + L DL PG +R LT E+A++ Sbjct: 186 IHEGRNRIIRRVFERVGYPVLRLQRVRVGPLRL-GDLPPGRWRDLTASEVAAL 237 >UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0LG91_HALO1 Length = 553 Score = 118 bits (296), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 133/234 (56%), Gaps = 11/234 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +RL ++++Q +R A I V+V+G+ V K++P D V+ G + + Sbjct: 5 IRLQRYLSQCGVAARRKAEELITSGVVSVNGQRVTELGTKVVPGRDRVSVRGEAVYPEE- 63 Query: 60 PRYFMLNKPQGYVCSTDDPDH-PTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 P Y +LNKP+G + + DP++ PTV+ +L + ++ GRLD + G++L+T+DG S Sbjct: 64 PFYVLLNKPKGCLTAVTDPENRPTVMEYL-HGLPARVVPVGRLDFYSEGVLLLTNDGDLS 122 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVR--- 175 R+ SPRHH EKTY V + V + E +GV+L + +T+PA ++++ T+ R Sbjct: 123 ARLQSPRHHVEKTYHVKVRDQVTERHLEVLRQGVRLED-GTVTRPAQIDMLGGTKSRHDW 181 Query: 176 --LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 +T++EG+ Q+ RM +G V++L R GG+T L G+ R LT+ E+ Sbjct: 182 LVITLTEGKSRQIHRMLGVLGYTVMKLQRVAFGGLTFHG-LRVGDARELTQAEV 234 >UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6G735_9DELT Length = 300 Score = 118 bits (296), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 82/241 (34%), Positives = 127/241 (52%), Gaps = 14/241 (5%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +RL KF+A SR A I V V+G++VR ++ PE D V G P+ Q Sbjct: 31 VRLQKFMASAGVASRRKAEELITAGVVRVNGQVVRELGTRVFPERDRVTVRGEPI-QAES 89 Query: 60 PRYFMLNKPQGYVCST----DDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDG 115 Y++LNKP G V S D+ PTV+ L V+ +L+ GRLD + G++L+T+DG Sbjct: 90 KVYYVLNKPDGVVSSAAGSVDERGRPTVISLL-HGVSERLYPVGRLDFHSRGVLLLTNDG 148 Query: 116 QWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKP-----AVLEVIT 170 + +T PRH KTY V + + ++ + GV+L ++ +T+P A E T Sbjct: 149 GLAEALTHPRHGVVKTYHVKFQGKLTEEQEQLLRDGVEL-DDGAITRPVAELFAFRETAT 207 Query: 171 PTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 ++ I EG Q++RM A+G+ V++L R IG IT D + GE+R L E+ + Sbjct: 208 NVWYQIGIREGLNRQIRRMGEAIGHPVLKLIRVAIGDITADG-VPEGEFRALNATEVGQL 266 Query: 231 V 231 + Sbjct: 267 L 267 >UniRef50_A5V220 Pseudouridine synthase n=5 Tax=Bacteria RepID=A5V220_ROSS1 Length = 624 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 87/232 (37%), Positives = 126/232 (54%), Gaps = 11/232 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 RL K +A SR I RV V+G++VR ++ PEHD + DG P+ + H Sbjct: 5 RLQKVLASAGIASRRDCEEYIAAGRVMVNGKVVRIPGTRVDPEHDEILVDGRPIGKIHHR 64 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y ML+KP G V +TDDP PTV+ ++ + +L GRLD D+ GL+L+TDDG+ + Sbjct: 65 TYVMLHKPAGVVSTTDDPQGRPTVIDLVN--LEQRLFPVGRLDYDSEGLLLLTDDGELTQ 122 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ----VR 175 ++T P + EK Y V L + + GV+L K T PA +E+I T VR Sbjct: 123 KLTHPSYQVEKEYRVLLNEAPSPAALRAWRTGVELDGVK--TAPAWVELIERTPDGAWVR 180 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 + + EGR Q++ + +G V L R R G +TL DL G +R LT+EE+ Sbjct: 181 VILHEGRKRQIREVARVLGYEVRRLIRVREGPLTL-GDLPSGTWRFLTDEEV 231 >UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytoplasma RepID=Q2NIZ3_AYWBP Length = 245 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 74/237 (31%), Positives = 124/237 (52%), Gaps = 11/237 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K +A SR A I R+ V+G+I+ K+ + D P+ + Sbjct: 3 RLQKVLAYANVASRRKAEILILEKRIKVNGKIISELGTKVSSSDIITLDDKPITKATYS- 61 Query: 62 YFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 YF+LNKP G++ + D + PTVL ++E +L+ GRLD +TTGL+L+T+DG + + Sbjct: 62 YFLLNKPNGFLSTAKDKKNRPTVLDLIEEASIQRLYPIGRLDFNTTGLLLITNDGDLTQK 121 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT-------PTQ 173 +T P K Y V + + + F KG+ + ++K L ++++ T Sbjct: 122 LTHPSFCIPKEYHVKINACLQKKDLSTFCKGI-IIDKKYLAVCKEIDILKISYMPKPSTW 180 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 ++L I+EG+ QV++M A+G V++L R R +T++ +L G YRPL EI + Sbjct: 181 LKLVITEGKNRQVRKMMQALGYQVLKLKRYRYSFLTIE-NLTIGAYRPLKIHEIKKL 236 >UniRef50_C4V2S0 Pseudouridine synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V2S0_9FIRM Length = 290 Score = 118 bits (295), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 86/232 (37%), Positives = 118/232 (50%), Gaps = 10/232 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKL-LPEHDVAYDGNPLAQQHGP 60 RL K I+ SR A IR RVTVDG V K H++A DG P+ + Sbjct: 4 RLQKIISNAGAASRRAAEALIRAGRVTVDGLPVTALGGKYDAARHEIAVDGTPIRRNERR 63 Query: 61 RYFMLNKPQGYVCST-DDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +L+KP+G + + DD TVL L A +L+ GRLD DT GL+++T+DG + Sbjct: 64 FYILLHKPRGCLSTAYDDRGRRTVLDLLPHFPA-RLYPVGRLDADTEGLLIITNDGAMTQ 122 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TPTQVR 175 + PR +K Y + V +D G+ L + + T PA L V+ T V Sbjct: 123 GLLHPRFEIDKVYRAEVTGNVTEDGLTALRNGILLDDGR--TAPARLRVLHREGERTVVE 180 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 I EGR QV+RMFAA+G V L R R +TLD ++ G +R LT +EI Sbjct: 181 TIIHEGRKRQVRRMFAAIGCRVQRLCRVRFAMLTLDG-VSCGSFRHLTSDEI 231 >UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VXU0_DYAFD Length = 555 Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 126/230 (54%), Gaps = 7/230 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+++IA SR A I +++V+G+IV +K+ P V Y L + Sbjct: 323 IRLNRYIANAGICSRREADDLISSGQISVNGKIVTEMGYKVRPTDVVKYGKKALNPEKMV 382 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y ++NKP+ Y+ +TDDP+ TVL + + +++ GRLD +TTGL+L+T+DG+ + Sbjct: 383 -YILINKPKDYITTTDDPEERKTVLDIIAGACSERVYPVGRLDRNTTGLLLLTNDGELAE 441 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ--VRLT 177 ++T P +K Y L+ P+ + EQ GV+L E +P + ++TP V L Sbjct: 442 KLTHPSSGIKKIYQAELDKPITTEDFEQLKAGVEL--EDGFIRPDEVGLVTPDAQVVGLE 499 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 I GR V+RMF +G V +L R G+ DL G++R LTE+E+ Sbjct: 500 IHSGRNRIVRRMFEHLGYEVQKLDRTVFAGLNK-KDLPRGKWRFLTEKEV 548 >UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organisms RepID=A4CJ52_9FLAO Length = 303 Score = 117 bits (294), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 72/232 (31%), Positives = 128/232 (55%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+K+IA SR A I VTV+G+ + +K+ P +V +DG L Q+ Sbjct: 70 IRLNKYIANAGICSRREADTYIAAGNVTVNGKTITEMGYKVQPTDEVRFDGR-LLQRERK 128 Query: 61 RYFMLNKPQGYVCST-DDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ ++ +T D+ TV+ + +L GRLD +TTGL+L T+DG+ + Sbjct: 129 EYVLLNKPRNFITTTRDEKGRRTVMELISRASNARLVPVGRLDRNTTGLLLFTNDGELAK 188 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEK-DLTKPAVLEVITPTQVRLTI 178 ++T P+H K Y V L+ + +G++L + + ++ + + ++ + +V + + Sbjct: 189 KLTHPKHGVRKIYHVELDKTFKSADLGKLREGLELEDGRIEVDEASYIDGASKKEVGVEL 248 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+R+F +G VV+L R + G+T DL G +R LTE+E+ ++ Sbjct: 249 HSGRNRIVRRIFEHLGYQVVKLDRVVLAGLT-KKDLPRGHWRHLTEQEVINL 299 >UniRef50_A4J3M3 Pseudouridine synthase n=167 Tax=Bacteria RepID=A4J3M3_DESRM Length = 309 Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 83/239 (34%), Positives = 128/239 (53%), Gaps = 13/239 (5%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 RL K +A+ SR + I +V V+G+ V K+ P D + G PL Sbjct: 4 RLQKILAKAGVASRRHSEELIISGQVKVNGKTVTEMGLKVDPTKDKIEVKGKPLPPLEKK 63 Query: 61 RYFMLNKPQGYVCS-TDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y ++NKP+GYV + +D+ D TV+ L + V +++ GRLD D+ GL+L+T+DG+ + Sbjct: 64 VYLLMNKPRGYVTTLSDERDRKTVVDLL-KGVEQRVYPVGRLDYDSEGLLLLTNDGELTQ 122 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVR---- 175 +T P+H +KTYL ++ + + AKG+ L E T PA + + R Sbjct: 123 ALTHPKHKVKKTYLAKVDGIPETEELKAMAKGLVL--EDGPTAPADVRLAGTGDNRALLE 180 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEE---EIASVV 231 ++I EGR QV+RM +G V+ L R RIG + L L GE R LT++ E+AS+V Sbjct: 181 ISIHEGRNRQVRRMCEHIGYKVLRLRRTRIGTLEL-GSLKSGEVRALTKKELRELASLV 238 >UniRef50_D1C7P2 Pseudouridine synthase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C7P2_SPHTD Length = 337 Score = 117 bits (294), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 88/235 (37%), Positives = 124/235 (52%), Gaps = 16/235 (6%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL + +A SR A I RVTVDG++VR ++ PE ++ DG L + Sbjct: 3 RLQRVLAAHGVASRRKAEELITAGRVTVDGQVVRELGVRVDPERQEIRVDGKRLRPERR- 61 Query: 61 RYFMLNKPQGYVCS-TDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 RY MLNKP GY+ + +D+ TV+ + V ++ AGRLD T GL+L+T+DG Sbjct: 62 RYIMLNKPPGYITTVSDERGRRTVMDLVQ--VPERVVPAGRLDRPTAGLLLLTNDGDLLF 119 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEK---DLTKPAVLEVITPTQVRL 176 RIT PR+ EK Y V ++ + +Q +GV + E+ D +P +E T +R+ Sbjct: 120 RITHPRYELEKEYEVLVDGHPPPEVLDQLRRGVTVDGERVVPDQVRPLRIEEAG-TVLRI 178 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIG-----GITLDA--DLAPGEYRPLTE 224 I EGR V+RM VG V++L R RIG G+ L A DL PGE L E Sbjct: 179 VIHEGRNRIVRRMMDRVGYPVLKLTRTRIGPIHVRGVPLGAWRDLTPGEVMQLLE 233 >UniRef50_A8SLU4 Pseudouridine synthase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLU4_9FIRM Length = 230 Score = 117 bits (293), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 9/230 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++KFIA SR A + +V V+G++ + +V +G + + Sbjct: 1 MRINKFIANSGYCSRRNADLLLEQGKVFVNGKLA-TKGIDISENDEVLVEGKKIKLEEAK 59 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 +Y++LNKP GY + VL +D +++ GRLD D+ GL+L+T+DG + Sbjct: 60 KYYLLNKPIGYSSTAKAQFQEKIVLDLIDSK--ERIYPVGRLDKDSFGLLLLTNDGDLAF 117 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI--TPTQVRLT 177 R+T P H+ EK Y+V ++ + + ++ + G+ L E +T+ A E++ V++ Sbjct: 118 RLTHPSHNVEKEYIVKVDKTLKESDLKKLSSGIML--EGKITRKARFEMLDFKSNIVKVF 175 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 + EGR Q+++MF + +V+ L R G I L L G YR L++EEI Sbjct: 176 LKEGRNRQIRKMFKTLDYNVISLERIAFGKIKL-GKLKVGNYRELSKEEI 224 >UniRef50_C1F236 Pseudouridine synthase n=8 Tax=Bacteria RepID=C1F236_ACIC5 Length = 406 Score = 117 bits (292), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 88/245 (35%), Positives = 121/245 (49%), Gaps = 22/245 (8%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 RL K +A SR A I RV V+G++V FK D + DG L Sbjct: 25 RLQKILASAGVASRRKAEELILAGRVQVNGQVVTEMGFKADAASDHIRVDGKLLQGPEKL 84 Query: 61 RYFMLNKPQGYVCSTDDPD--HPTVLYFLDEPVAW-KLHAAGRLDIDTTGLVLMTDDGQW 117 RYFMLNKP+GYV + DP+ H + +F +L+ GRLD + GL+LMT+DG Sbjct: 85 RYFMLNKPKGYVTTVSDPEGRHTVMEFFHGRGKGGERLYPVGRLDYASEGLLLMTNDGAL 144 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT-PTQVR- 175 ++ +T H EK YLV + ++ EQ G+ + D +P V+T P VR Sbjct: 145 ANTLTKASSHVEKVYLVKVSGRPTEEQLEQIRAGIMI----DRGRPGEGRVMTAPAGVRM 200 Query: 176 ----------LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEE 225 LT+ EGR ++++MF G H VE R RIG L D+ PGE R L E Sbjct: 201 VRDAENPWFELTLIEGRNREIRKMFEETG-HFVEKIR-RIGYGPLVLDVEPGEVRELNPE 258 Query: 226 EIASV 230 E+ S+ Sbjct: 259 EVDSL 263 >UniRef50_C1MMY3 Predicted protein n=1 Tax=Micromonas pusilla CCMP1545 RepID=C1MMY3_9CHLO Length = 305 Score = 115 bits (289), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 93/236 (39%), Positives = 128/236 (54%), Gaps = 16/236 (6%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RLD+ +++ +RA A R R RV + GE V A K+ P DV DG P G Sbjct: 56 RLDRLLSRLGYCTRAEAKRWARDGRVLLHGEPVARAEAKVTP-RDVLIDGEPAEAPDG-L 113 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-----LHAAGRLDIDTTGLVLMTDDGQ 116 +++KP+G VC D + P+V L P W+ + GRLD DTTGL+L+TDDG Sbjct: 114 LALMHKPRGRVCGHDASEGPSVYDLL--PERWRARRPGVETIGRLDKDTTGLLLLTDDGD 171 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKG-VQLHNEKDLTKPAVLEVI-----T 170 HR+ SP+ EK Y + +++P+ D + FA G + L EK PA L V Sbjct: 172 LLHRLASPKKRVEKVYELVVDAPIPRDAVDLFASGSLTLTGEKKPCLPAKLIVSERADHN 231 Query: 171 PTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLD-ADLAPGEYRPLTEE 225 T+ L+++EG++HQVKRM AVG V LHRE GG+ L +L GE R L+ E Sbjct: 232 RTRASLSVTEGKFHQVKRMMRAVGCEVTALHRESFGGMALSRMELREGEVRVLSRE 287 >UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B n=200 Tax=Bacteria RepID=RLUB_BACSU Length = 244 Score = 115 bits (289), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 70/235 (29%), Positives = 128/235 (54%), Gaps = 10/235 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K IA SR A I+ +V V+G++V K+ + +G + ++ P Sbjct: 3 RLQKVIAHAGVASRRKAEELIKEGKVKVNGKVVTELGVKVTGSDQIEVNGLKVEREE-PV 61 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 YF+L KP+G + + D V+ + + +++ GRLD DT+GL+L+T+DG++++++ Sbjct: 62 YFLLYKPRGVISAAQDDKGRKVVTDFFKNIPQRIYPIGRLDYDTSGLLLLTNDGEFANKL 121 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT------PTQVR 175 P++ +KTY+ ++ + + +G++L K T PA ++++ + ++ Sbjct: 122 MHPKYEIDKTYVAKVKGIPPKELLRKLERGIRLEEGK--TAPAKAKLLSLDKKKQTSIIQ 179 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 LTI EGR QV+RMF A+G+ V++L RE + L L G+ R LT E+ + Sbjct: 180 LTIHEGRNRQVRRMFEAIGHEVIKLKREEYAFLNLRG-LHTGDARELTPHEVKRL 233 >UniRef50_A9SG51 Predicted protein n=3 Tax=Embryophyta RepID=A9SG51_PHYPA Length = 560 Score = 115 bits (288), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 75/244 (30%), Positives = 123/244 (50%), Gaps = 21/244 (8%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAY-DGNPLAQQHGP 60 RL K +A SR + I RV V+G++ + P D + DG L ++ P Sbjct: 243 RLSKVLAAAGVASRRGSEDIIFAGRVKVNGKVCTVPQTPVNPLKDTIFLDGRSLPKKPPP 302 Query: 61 R-YFMLNKPQGYVCST-DDPDHPTVLYFLDEPVAW----------KLHAAGRLDIDTTGL 108 + YF LNKP+GY+CS+ D P + D W +L GRLD+ T+GL Sbjct: 303 KFYFALNKPKGYICSSAKDAPKPALSLLEDYWKIWDKKNPGVSRPRLFTVGRLDVATSGL 362 Query: 109 VLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEV 168 +L+T+DG ++ R++ P K Y+ T+ V + A G ++ + + P +E+ Sbjct: 363 LLITNDGDFAQRVSHPSSGLTKEYIATVTERVTKRQLQLIAGGTKVQDVHCV--PTEVEL 420 Query: 169 ITP------TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPL 222 + P ++R+ + EGR +V+ + A G V+ L R RIGG++L L+PG++ L Sbjct: 421 LPPEPGDARNRIRIVVCEGRNREVRELVANAGLEVLALKRVRIGGLSLSRKLSPGKFEVL 480 Query: 223 TEEE 226 TE + Sbjct: 481 TETQ 484 >UniRef50_Q3AVD5 Pseudouridine synthase n=3 Tax=Cyanobacteria RepID=Q3AVD5_SYNS9 Length = 247 Score = 115 bits (287), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 79/235 (33%), Positives = 118/235 (50%), Gaps = 8/235 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K +A SR ++ RVTVDG + + DG PL PR Sbjct: 5 RLQKLMAAAGLCSRRRGEDWLQAGRVTVDGRVASLGDQADPNSQLIEVDGVPLISVQEPR 64 Query: 62 YFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 F+LNKP G +CS DP TVL L LH GRLD D+ G +L+TD G+ + R Sbjct: 65 VFLLNKPVGVICSCRDPQGRATVLDCLPHQERSGLHPVGRLDADSRGALLLTDQGELTLR 124 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TPTQVRL 176 +T PR++ KTY V + + ++ G+ L LT+PA + + + + + Sbjct: 125 LTHPRYNHAKTYRVLVRGIPSSQALRRWRDGLLLDGR--LTRPARVHCLRSRGASSLLEV 182 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 + EGR Q++R+ +G+ V++L R I GI LD DLA G +R L E ++++ Sbjct: 183 ELKEGRNRQIRRVAELLGHPVIDLQRVAIDGIRLD-DLAEGCWRRLDAREWSTIL 236 >UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZI67_9SPHI Length = 391 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 72/230 (31%), Positives = 127/230 (55%), Gaps = 7/230 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL++FI+ SR A + I ++V+G+++ F++ P V Y G L ++ Sbjct: 159 MRLNRFISNSGVCSRREADKLIEMGMISVNGKVITEMGFQVSPTDTVKY-GKRLLKREKF 217 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ ++ +T+DP D TV+ + +++ GRLD +TTGL+L T+DG+ + Sbjct: 218 VYVLLNKPKDFITTTNDPQDRKTVMDLIKNSCDERIYPVGRLDRNTTGLLLFTNDGEVAK 277 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP--TQVRLT 177 +++ P H +K Y V L+ P+ D+ + A+GV L E + ++ P T V + Sbjct: 278 KLSHPSHDVKKVYQVELDKPLKDEDLDSIAEGVIL--EDGYAAVDEIAILNPERTLVGVE 335 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 I GR V+R+F + VV+L R G+ ++ G++R L+E+E+ Sbjct: 336 IHIGRNRIVRRIFNHLDYEVVKLDRTMYAGLN-KKNIDRGDWRYLSEKEV 384 >UniRef50_C7NDY8 Pseudouridine synthase n=5 Tax=Fusobacteriaceae RepID=C7NDY8_LEPBD Length = 228 Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/229 (32%), Positives = 119/229 (51%), Gaps = 9/229 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDG-EIVRNAAFKLLPEHDVAYDGNPLAQQHG 59 MRL+KFIA+ SR A I RVTV+ E + + PE V DG + Sbjct: 1 MRLNKFIAETGFCSRRKADELINEGRVTVNKHEAI--IGMDVKPEDVVRIDGERVKLNTR 58 Query: 60 PRYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y++LNKP+ +CS +D + F+ +L GRLD T GL+++++DG+ Sbjct: 59 YEYYILNKPKRVLCSNEDKFGRRLAVDFIKSRA--RLFTYGRLDFMTEGLIIISNDGEVY 116 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 + + PR K+Y+ + + D E GV + ++ T PA ++ I ++R+ I Sbjct: 117 NHVMHPRKKLYKSYIAKVSREIEDKDIEALQHGVVIDGKR--TAPAKVKKIDKKELRIAI 174 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 EGR Q+++M +G +V L R ++G +TL +L GEYR L E+EI Sbjct: 175 FEGRNRQIRKMLETLGYNVNSLKRIKVGELTL-GNLQVGEYRALNEDEI 222 >UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PP04_CHIPD Length = 516 Score = 114 bits (286), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 75/231 (32%), Positives = 129/231 (55%), Gaps = 5/231 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 M L+K+IA SR A ++ +VTV+GE++ AFK+ + +VA + + Q Sbjct: 280 MPLNKYIAHSGLCSRRKAVDFVKEGKVTVNGELITEPAFKVTAKDEVAINNRKINIQKNL 339 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVA--WKLHAAGRLDIDTTGLVLMTDDGQW 117 Y +LNKP+GY+ +TDDP+ TV+ + + +++ GRLD +T+GL+L+T+DG+ Sbjct: 340 VYILLNKPKGYITTTDDPEGRKTVMELIQDATTEEQRVYPVGRLDRNTSGLLLLTNDGEL 399 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNE-KDLTKPAVLEVITPTQVRL 176 + ++ P+H+ +K Y V L P+ E +GV L + ++ +E TQV + Sbjct: 400 AQKLAHPKHNIKKIYHVGLNKPLTKAHFENILQGVTLEDGVANVDALGYVEAGDKTQVGI 459 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 I G+ V+R+F + V +L R G+T ++ G++R LTE+EI Sbjct: 460 EIHSGKNRIVRRIFEHLEYEVEKLDRVTYAGLTK-KNINRGKWRFLTEKEI 509 >UniRef50_B0VG32 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VG32_9BACT Length = 279 Score = 114 bits (285), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 74/236 (31%), Positives = 123/236 (52%), Gaps = 8/236 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +RL++++A SR I R+ V+G +V++ + +++P D V DG P+ Sbjct: 40 LRLNRYLADCGLGSRRKVEEFITTGRIAVNGNLVQDLSRQIIPGKDKVTLDGKPIQPAKE 99 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+GYV S +D +Y L P +L AGRLD ++ GL+ T+D + Sbjct: 100 KFYLILNKPRGYVVSQNDELGRKTVYSLLPPKGKQLAYAGRLDKESEGLLFFTNDTALIN 159 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT----QVR 175 +T P++ EK Y V + P+ + KGV++ K L PA + V + ++ Sbjct: 160 LLTHPKNKVEKVYRVDINRPLNNMELNMLRKGVEIEGGKTL--PAGIFVKSKNANGMTLK 217 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 + I+EGR Q+++M AVG V L R + G + L DL G +R L E+ +++ Sbjct: 218 IVITEGRKRQIRQMIEAVGAKVTYLKRLQFGPLKLK-DLPVGRWRLLEPGEVKALL 272 >UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia JCVIHMP010 RepID=D1Y0J0_9BACT Length = 555 Score = 114 bits (285), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 74/231 (32%), Positives = 127/231 (54%), Gaps = 8/231 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+KF+A SR A I +VTV+GE++ K+L +V + + L Sbjct: 320 LRLNKFLANAGVCSRREADDFILAGQVTVNGEVINELGTKILRTDEVKFQ-DKLVSLEKK 378 Query: 61 RYFMLNKPQGYVCSTDDPDH-PTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ YV ++DDP TV+ + + +++ GRLD +TTG++L T+DG + Sbjct: 379 VYVLLNKPKDYVTTSDDPQQRKTVMDLVKDACPERIYPVGRLDRNTTGVLLFTNDGDLAS 438 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP---TQVRL 176 ++T P+ +K Y V L+ P+ + ++ + G++L E K +E P QV + Sbjct: 439 KLTHPKFLKKKVYHVFLDKPITANELQKISDGIEL--EDGEIKADAIEYANPEDQAQVGI 496 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 I G+ V+R+F ++G VV+L R G+T ++ G++R LTE+E+ Sbjct: 497 EIHSGKNRIVRRIFESLGYRVVKLDRVMFAGLT-KKNVRRGDWRFLTEKEV 546 >UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q01SF5_SOLUE Length = 249 Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/233 (33%), Positives = 123/233 (52%), Gaps = 7/233 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 RL K ++Q SR A + ++ RVTV+G ++ K + D + DG L Sbjct: 5 RLQKILSQAGVSSRRQAEKLMQEGRVTVNGSVITELGSKADLDRDHIKVDGRLLKAPKHQ 64 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y LNKP+G V + DP+ + L V +++ GRLD + GL+L+T+DG+ ++ Sbjct: 65 IYIALNKPKGTVTTVHDPEGRETVMDLLHRVKERVYPVGRLDYHSEGLLLLTNDGELANS 124 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ---VRLT 177 I S H EKTY+V + + + E+F GV L + L PA L++++ + + Sbjct: 125 IMSAATHLEKTYVVKVTGTLTAEQEEKFRTGVPLSGRRTL--PAGLKLLSRAENPWYEVK 182 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 ++EGR +Q++ MF G V +L R RIG I L L G +R L EE++A + Sbjct: 183 LTEGRNNQIRMMFRHFGKLVEKLKRVRIGPIEL-GTLKTGAFRYLDEEDVAKL 234 >UniRef50_Q1D9N8 Pseudouridine synthase n=4 Tax=Cystobacterineae RepID=Q1D9N8_MYXXD Length = 268 Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 72/213 (33%), Positives = 113/213 (53%), Gaps = 10/213 (4%) Query: 22 IRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP-RYFMLNKPQGYVCSTDDPDH 80 IR RV+++G + + A + P V DG ++ + P R +KP G + ST+ Sbjct: 45 IRAGRVSINGRVAKMALTPVPPGATVKVDGLVVSLEAPPTRVLAFHKPAGLLSSTERQHR 104 Query: 81 PTVLY------FLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLV 134 ++ E + HA GRLD+D+TGL+L T+D + TSP H K Y+ Sbjct: 105 TGTVFEALLPQLPPELAGYTWHAVGRLDVDSTGLLLFTNDDKLVAHATSPDAHLPKRYVA 164 Query: 135 TLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEGRYHQVKRMFAAVG 194 T+ S +D+ E +G+ L + +PA + V V +T++EGR+HQVKRM AVG Sbjct: 165 TVFSTASDERVEPLRRGMTLDDGP--ARPAKVNVRDEHTVEVTLTEGRHHQVKRMLGAVG 222 Query: 195 NHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 V LHRE +G + L+ + G +R LT++E+ Sbjct: 223 LPVRALHREAVGSVDLEG-IPEGTFRLLTDDEV 254 >UniRef50_Q04T62 Pseudouridine synthase n=4 Tax=Leptospira RepID=Q04T62_LEPBJ Length = 244 Score = 114 bits (284), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 77/216 (35%), Positives = 119/216 (55%), Gaps = 7/216 (3%) Query: 1 MRLDKFIAQ-QLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDV-AYDGNPLAQQH 58 +RL++F+A LG R +RG ++T++G+ V + K+ P DV +Y GN + Sbjct: 13 IRLNRFLADCGLGSRRKTEELILRG-QITINGKRVTDLGTKIKPGSDVVSYLGNVVEPTR 71 Query: 59 GP-RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQ 116 P R +LNKP GY+CS D H ++ L P+ +K AGRLD+++ GL+++T+DG+ Sbjct: 72 KPKRILILNKPVGYLCSHGDRFHEKTVFSL-LPLTYKNFKIAGRLDLNSRGLLILTNDGE 130 Query: 117 WSHRITSPRHHCEKTYLVTLE-SPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVR 175 + +I+ P + EK YLVTL P F KG+ E K L R Sbjct: 131 LAQKISHPSNGSEKEYLVTLNHDPGEKWIQAAFQKGILDAGEILRAKMVKLVPGKNCVYR 190 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLD 211 + ++EG+ Q++RMF A G V++L R RIG I L+ Sbjct: 191 VILAEGKKRQIRRMFHASGASVIDLQRIRIGSIQLE 226 >UniRef50_Q2SRP5 Ribosomal large subunit pseudouridine synthase B n=3 Tax=Mollicutes RepID=Q2SRP5_MYCCT Length = 252 Score = 114 bits (284), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 75/239 (31%), Positives = 123/239 (51%), Gaps = 14/239 (5%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K I+ + SR A + I NRV V+ +I+ K+ P+ ++ D + + Sbjct: 5 RLQKVISSRGYCSRRTAEKLILENRVKVNNQIINKLGVKIDPKAEIIIDNKLVTSDSNNQ 64 Query: 62 --YFMLNKPQGYVCSTDDPDHPTVL--YFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 Y++ KP+ + + DP + YF D + +++ GRLD D +GL++MT+DG+ Sbjct: 65 KYYYLFYKPRLVLTTMYDPKKRKTVADYFKD--LNHRVYPVGRLDYDVSGLLIMTNDGEL 122 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ---- 173 S+ I P++ KTY + V Q KGV + N LTK ++I + Sbjct: 123 SNFIMHPKYEFLKTYQGLCQGQVNKQQVNQLIKGVYIDNNY-LTKAYSSKLIKYDKLKNV 181 Query: 174 --VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 V LTI+EG+ H VK+MF ++ +++L R RI + +D +L PG+YR L EI + Sbjct: 182 SIVELTINEGKKHHVKKMFESIQAQLLKLKRTRIEFLEID-NLKPGQYRELKVHEIKKL 239 >UniRef50_C8WAL4 Pseudouridine synthase n=7 Tax=Coriobacteriaceae RepID=C8WAL4_ATOPD Length = 279 Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 127/254 (50%), Gaps = 27/254 (10%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 MRL +F+A+ SR + R + RVTV+G++V K+ P VA DG + Sbjct: 9 MRLQRFLARAGVASRRGSERLMTSGRVTVNGQVVTELGSKVDPLVDVVAVDGVVCSIAEK 68 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 P Y MLNKP GY+ + DP PT++ + L GRLD+DTTGL+ T DGQ + Sbjct: 69 PVYLMLNKPAGYLTTMKDPQGRPTIVDMVPTDTYPGLFPVGRLDMDTTGLLFFTTDGQMA 128 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT-------- 170 + P H K Y+ + ++ + +G++L E PA +E+I+ Sbjct: 129 QELLHPSKHVWKHYVAHVVGTPTEEQLNRLREGIEL--EDGPAAPAEVEIISDDVKMKNL 186 Query: 171 -------------PTQ-VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAP 216 P V +TI EGR HQVK+M A+ + V+ LHR+ G + L + Sbjct: 187 LAPQGLGKTGGGEPNALVSVTIREGRKHQVKKMLLAIHHRVLALHRDTFGPLHL-TRVKE 245 Query: 217 GEYRPLTEEEIASV 230 GE+R LTEEE+ ++ Sbjct: 246 GEWRLLTEEEVTAL 259 >UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales RepID=C6J9Y4_9FIRM Length = 323 Score = 113 bits (283), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 71/227 (31%), Positives = 125/227 (55%), Gaps = 7/227 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +R++K++++ SR A R I R+TV+G+ + K+ E ++ D P+ + Sbjct: 14 IRINKYLSEAGICSRREADRMIEEGRITVNGKKAESGQ-KVSLEDEICADNIPVHKNEKK 72 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 + NKP+G VCST D TV +LD P+ +++ GRLD ++ GL+L+T++G + Sbjct: 73 VLLLFNKPRGIVCSTKQQFDETTVTDYLDYPL--RVYPVGRLDKESQGLLLLTNEGDLVN 130 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 +I ++ EK Y VT+ PV + + +KGV + + +T+P + R+ ++ Sbjct: 131 KIMRAGNYHEKEYFVTVNKPVDREFVRRMSKGVPVLD--TVTRPCRVVQTGECSFRIILT 188 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 +G Q++RM +G V +L R RI +TLD + GEYR +T +E Sbjct: 189 QGLNRQIRRMCRYLGYEVQKLKRIRIMNLTLDG-IREGEYREITAQE 234 >UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BAD7 Length = 247 Score = 113 bits (283), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 116/234 (49%), Gaps = 14/234 (5%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K IAQ SR A I+ +VTV+GE+V K+ + + +G L + Sbjct: 4 RLQKVIAQSGYTSRRKAEELIQQGKVTVNGEVVTVLGTKVTKKDTICVNGK-LINKEDKV 62 Query: 62 YFMLNKPQGYVCSTDDPDHPTVL--YFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y++ KP+ VC+ D T + YF D +++ GRLD DTTG + MT+DG++++ Sbjct: 63 YYLFYKPEKCVCTMSDEHDRTCVADYFADS--NERVYPVGRLDYDTTGALFMTNDGEFAN 120 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI------TPTQ 173 I P H EK Y V+++ + Q KG+ L K L P + + T Sbjct: 121 LIMHPSSHLEKVYEVSVKGLLTKAEKNQLEKGIYLEGVKTL--PCEIAITGNDEEHGTTM 178 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 + + + EG+ Q+K+MF VG+ V L R IG I L L PG YR L E+ Sbjct: 179 LLIRLVEGKNRQIKKMFEEVGHPVKRLRRIMIGPIDLKG-LTPGTYRRLKPHEV 231 >UniRef50_B0S1L0 Pseudouridine synthase n=2 Tax=Finegoldia magna RepID=B0S1L0_FINM2 Length = 242 Score = 113 bits (283), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 70/237 (29%), Positives = 124/237 (52%), Gaps = 19/237 (8%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++KFIAQ SR A I+ ++V V+G I+ + ++++ V +G + + Sbjct: 1 MRINKFIAQSGYCSRRNADELIKNSKVYVNGTILLDLSYQVNDTDIVEVEGKKINLKEDK 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVA------WKLHAAGRLDIDTTGLVLMTDD 114 Y +NKP GY + D F D+ V +++ GRLD D+ GL+++T+D Sbjct: 61 IYIAINKPIGYASTVKDK-------FADKKVVDLIKSDTRVYPVGRLDKDSHGLLILTND 113 Query: 115 GQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----T 170 G++++ +T P+ +K Y V ++ +Q G+ L K K + +E I Sbjct: 114 GEFTYELTHPKFEHKKIYEVLVKGKPNKTEIKQLKDGILLDGYK--LKKSKIEFIENVKN 171 Query: 171 PTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 T+ R+TI EGR Q++RMF + + V++L R +IG ++ L GEY+ L +++ Sbjct: 172 DTKYRVTIFEGRNRQIRRMFDFINHPVLDLKRVQIGNYKMENSLKSGEYKLLKSKDL 228 >UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3JBA6_9PORP Length = 459 Score = 113 bits (282), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 74/232 (31%), Positives = 128/232 (55%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+KF+A SR +A + I V+V+GEIV + E ++ DG P++ + Sbjct: 224 LRLNKFLASSGVCSRRVADQLIVDGHVSVNGEIVTQLGKHVTREDFISVDGKPVSIEKKI 283 Query: 61 RYFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ V ++ DP+ T + + +++ GRLD +TTGL+L+T+DG + Sbjct: 284 -YVLLNKPRNCVTTSSDPEKRLTAIDLVRNACNERIYPVGRLDRNTTGLLLLTNDGDLAA 342 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHN-EKDLTKPAVLEVITPTQVRLTI 178 ++ P++ +K Y VTL+ PV+ + +Q A G++L + E + ++ V + I Sbjct: 343 KLMHPKYEKKKIYQVTLDKPVSVEHMQQIASGIELEDGEIHADAISYVDENNLAIVGIEI 402 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+R+F +G V +L R G+T DL G +R LTE+E+ ++ Sbjct: 403 HSGRNRIVRRIFKHLGYRVYKLDRVYFAGLT-KKDLPRGRWRYLTEDEVRNL 453 >UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroidetes RepID=D2QMI8_9SPHI Length = 638 Score = 112 bits (281), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 127/233 (54%), Gaps = 7/233 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 RL++FIA SR A I ++V+G+IV +K+ V Y G + Sbjct: 405 TRLNRFIANSGVCSRREADELIAHGDISVNGKIVTEMGYKVKEGDTVKY-GTKVLNPERF 463 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ Y+ +T+DP+ TV+ + + ++++ GRLD +TTGL+L+T+DG+ + Sbjct: 464 VYVLLNKPKDYITTTEDPEERKTVMELVADAGKFRMYPVGRLDRNTTGLLLITNDGELAD 523 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ--VRLT 177 ++T P ++ K Y V L+ P+ D+ E KG++L E KP + ++TP V + Sbjct: 524 KLTHPSNNIRKIYQVELDKPITDEHFEAIKKGIEL--EDGPIKPDAISIVTPDAYVVGIE 581 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I GR V+R+F + G V +L R G+T +L G++R L +E+ + Sbjct: 582 IHSGRNRIVRRIFESFGYEVTKLDRTTYAGLTK-KELPRGKWRFLDPKEVVKL 633 >UniRef50_Q1MQ05 Pseudouridine synthase n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQ05_LAWIP Length = 270 Score = 112 bits (281), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 79/240 (32%), Positives = 127/240 (52%), Gaps = 16/240 (6%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDV-AYDGNPL-AQQH 58 +R++K +A SR + I VT++G+ V + P+ D+ A G + Q Sbjct: 24 IRINKALANAGVCSRRNVDKYILNGEVTINGKSVTQPGIYIHPDKDIIALHGRRVDIQLK 83 Query: 59 GPRYFMLN--KPQGYVCSTDDP-DHPTVLYFLDEPVAWK---LHAAGRLDIDTTGLVLMT 112 +Y+ L+ KP + S DP + TVL F+ P WK L+ GRLD + GL+L+T Sbjct: 84 NKKYYYLSMYKPIKVISSVKDPQNRLTVLDFI--PFPWKNYRLYPVGRLDFFSEGLLLIT 141 Query: 113 DDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDL--TKPAVLEVIT 170 +DG+ + R+T PR+H K Y V + + + T + +KG+ L + L K VL IT Sbjct: 142 NDGELTQRLTHPRYHISKVYHVLIRERILNTTLKNISKGITLSDGTKLPPAKVRVLSSIT 201 Query: 171 PTQ---VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 T + +T+ +G Q++RM +G +++L R + G I L ++L PGE RPL +EI Sbjct: 202 ETNTTWLEITLQQGINRQIRRMCKELGLTILKLIRVKQGNINL-SNLQPGEVRPLKNDEI 260 >UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MNA2_CRYCD Length = 296 Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 83/234 (35%), Positives = 113/234 (48%), Gaps = 9/234 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +RL KF+A+ SR + R I RV V+G ++ K+ P D V DG + Sbjct: 50 LRLQKFLARAGVASRRGSERLISAGRVAVNGIVITELGTKVDPLVDEVCVDGAIVTWGAP 109 Query: 60 PRYFMLNKPQGYVCSTDD-PDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 LNKP G + + D V + L GRLD DTTGL+L + DG Sbjct: 110 AVTLALNKPAGIITTMKDLRGRRCVADIMPTEQYPGLFPIGRLDQDTTGLLLFSTDGNLG 169 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ----V 174 + + P H K Y T+E + EQ A G+ L + +T PA + V+ + + Sbjct: 170 NALLHPSHGVSKVYRATIEGSIGQAALEQLASGILL--DDGMTAPARVSVVQAGKKHSVI 227 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 L + EGR HQVKRM AVG+ VV+LHR G I L A LA G YR L E++ Sbjct: 228 ELELHEGRKHQVKRMCQAVGHPVVKLHRASFGPIDL-AGLATGAYRRLEGAELS 280 >UniRef50_A1S9T3 Pseudouridine synthase n=1 Tax=Shewanella amazonensis SB2B RepID=A1S9T3_SHEAM Length = 254 Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 77/237 (32%), Positives = 123/237 (51%), Gaps = 18/237 (7%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K++A+ SR A R I RV +DG+ ++ ++ + V DG PL Sbjct: 11 RLCKYLAEAGVASRRGASRLIETGRVCIDGQQASHSD-RVFDSNRVTVDGAPLCPAQAKA 69 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 YF+ +KP G C D ++++ L P +L AGRLD D+ GL+L+T+DG+ + R+ Sbjct: 70 YFLYHKPVGIDCRLRAEDPHSLIHCL--PGDLRLFPAGRLDKDSRGLLLLTNDGELTQRL 127 Query: 122 TSPRHHCEKTYLVTL-ESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----------T 170 P H +K YL+TL ++P DD A A + T+P V+E Sbjct: 128 MHPDFHHQKGYLITLNKAPQPDDIA---AIAAGFDYGEGPTRPCVVEAAIDCGYATEDGN 184 Query: 171 PTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 P ++R+ ++EG+ Q++R++ A G V++L RE I + + L GE R LT E+ Sbjct: 185 PRKLRMRLTEGKKRQIRRLWRARGYRVLDLLRESIQQLNI-GKLEQGEIRSLTASEL 240 >UniRef50_B6W7S5 Pseudouridine synthase n=2 Tax=Anaerococcus RepID=B6W7S5_9FIRM Length = 231 Score = 112 bits (279), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 125/230 (54%), Gaps = 8/230 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++K+IA+ SR + I+ V V+G+ + + ++++ E+D L + Sbjct: 1 MRINKYIAKAGLASRRKSEEYIKKGLVFVNGKKLDDLSYQV-KENDQVKVMGKLLEIKEK 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y+ LNKP G++ S DP + L L + + AGRLD D+ GL+L+T+DG+ +++ Sbjct: 60 FYYKLNKPIGFISSNYDPHNKKDLNSL-VKIDHRFFCAGRLDKDSHGLMLITNDGKITNK 118 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLH-NEKDLTKPAVLEVITPTQ--VRLT 177 + P EKTY+V ++ + D F KG++L NEK T A + +I + Sbjct: 119 LIHPSKKIEKTYIVKVDKLLNKDDEALFRKGIKLSVNEK--TSDAKINLIDENSKIYEVI 176 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 I +G QV+RMF G+ V++L R +IG I L L G+Y+ L ++E+ Sbjct: 177 IHQGFNRQVRRMFLYFGSKVIDLKRIKIGQIEL-GKLEDGKYKKLNKKEL 225 >UniRef50_D1R854 Pseudouridine synthase n=4 Tax=Chlamydiales RepID=D1R854_9CHLA Length = 261 Score = 111 bits (278), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 71/226 (31%), Positives = 116/226 (51%), Gaps = 5/226 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDV-AYDGNPLAQQHGP 60 RL K +A SR I VTV+GE+ L+ E+DV G + ++ Sbjct: 34 RLSKVMAAAGVASRRACEMLIFDGCVTVNGEVTL-VPQTLVDENDVITCKGQSVGKKQNK 92 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y++LNKP GY+CS ++ L + V +L GRLD DT+GL+++T+DG +++R Sbjct: 93 VYYILNKPIGYICSNKRNKDSKIVLDLFDTVEERLFTVGRLDKDTSGLIIVTNDGHFANR 152 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 + P + K YLV V + + G + EK +P + + +++TI+E Sbjct: 153 VIHPSANIHKEYLVKTNEEVEAEHLSALSSGTLV--EKTFVRPIRVSKVRRGTLKITIAE 210 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 G+ +++ + + V+EL R RIGG+ L L PGE+R +T E Sbjct: 211 GKKREIRLLMESAKLPVLELTRIRIGGLHL-GPLQPGEWREMTARE 255 >UniRef50_B3E104 Pseudouridine synthase n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3E104_METI4 Length = 256 Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 74/230 (32%), Positives = 121/230 (52%), Gaps = 3/230 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +R+++++A SR +R R+ V+G+IVR K+ E V DG L + Sbjct: 11 IRINRYLASCGLGSRRSCEDLVREGRIKVNGQIVRTLGQKISAEDKVEIDGFLLLRPQQK 70 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 +YF+ KP+G VCS DP +Y L L + GRLD D+ GL+L+T+DG ++ Sbjct: 71 QYFLFYKPRGIVCSRKDPFGGKTIYDLLPSSLHHLFSVGRLDKDSEGLLLLTNDGLLANA 130 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 + PR+H KTY+VTL + + KG+ + ++ ++E +++ +S+ Sbjct: 131 VLHPRYHFAKTYIVTLCPSFEEKHQKDLLKGMYIEGKRAKADKVIIE--NKNTLKIVLSQ 188 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G Q++ M + +G V L R +G +TL + PGE R LTE EI S+ Sbjct: 189 GMKRQIRTMLSLLGYKVNRLRRVALGPLTLK-RMKPGELRSLTEREIKSL 237 >UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium RepID=C8NNL7_COREF Length = 329 Score = 111 bits (277), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/238 (34%), Positives = 118/238 (49%), Gaps = 11/238 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDV-AYDGNPLAQQHG 59 +RL K +AQ SR A I RV V+G IV ++ P DV DG + Sbjct: 89 IRLQKVLAQAGVASRRHAEILIDNGRVEVNGRIVTTQGTRVNPNSDVIRVDGVRININED 148 Query: 60 PRYFMLNKPQG-YVCSTDDPDHPTVLYFLDEPVA--WKLHAAGRLDIDTTGLVLMTDDGQ 116 YF+LNKP+G + +DD P V + E A +L GRLD DT GL+L+T+DG+ Sbjct: 149 LEYFVLNKPRGMHSTMSDDLGRPCVGDLVSEKTASGQRLFHVGRLDADTEGLLLLTNDGE 208 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ--- 173 ++R+ P++ KTYL T+ + KG++L E K +++I Q Sbjct: 209 LANRLMHPKYEVRKTYLATVRGEAGPNLVTTLRKGIEL--EDGPAKADYVQIIDTFQGKS 266 Query: 174 -VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +RL I EGR H V+RM G V L R ++ + L + PG R L E+AS+ Sbjct: 267 LIRLEIHEGRKHIVRRMLDEAGFPVERLVRTKLHTVQL-GEQKPGSLRALNASELASL 323 >UniRef50_A6EPE0 Pseudouridine synthase n=1 Tax=unidentified eubacterium SCB49 RepID=A6EPE0_9BACT Length = 291 Score = 110 bits (276), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 71/229 (31%), Positives = 120/229 (52%), Gaps = 4/229 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL+K I+ SR A + I +VT++G V + + +P+ + +GN + + + Sbjct: 9 RLNKAISDSGYCSRRQADKLIEEGKVTLNGNPV-SLGDRAMPDDVIHVEGNLITENNNLV 67 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y +LNKP G C+TD V+ ++D ++ GRLD + GL+LMT+DG ++I Sbjct: 68 YIILNKPVGITCTTDLRVEGNVVDYIDH--KERIFHVGRLDKPSEGLLLMTNDGDIVNKI 125 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEG 181 + EK Y V ++ P+ + + G+ L + TK +E ++ R+ + +G Sbjct: 126 LRAGNSHEKEYFVKVDRPITTEFIRRMGNGIPLEELETTTKKCFVEQVSRFVFRIILVQG 185 Query: 182 RYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 Q++RM + V+EL RERI I L DL GE+R LT+EE+ + Sbjct: 186 LNRQIRRMCEYLDYEVMELKRERIMNIEL-GDLPYGEWRDLTKEELQGL 233 >UniRef50_C8PSZ6 Ribosomal large subunit pseudouridine synthase B n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PSZ6_9SPIO Length = 252 Score = 110 bits (275), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 65/227 (28%), Positives = 115/227 (50%), Gaps = 4/227 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL ++A SR + I RV+V+G +V K+ V +DG P+ + Sbjct: 15 MRLQVYLAHAGVASRRACEKIIEEGRVSVNGTVVTGMGSKVCAGDTVLFDGKPVHPEARK 74 Query: 61 RYFMLNKPQGYVCS-TDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP G+VC+ +D+ PT L E + +L+ GRLD+ ++G +L T+DG ++ Sbjct: 75 CYVLLNKPAGFVCTLSDEKGRPTAADLLKEAYSERLYNIGRLDMFSSGAILFTNDGDFAA 134 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 +I P EK Y++ + +F +G+++ + K + ++R+ + Sbjct: 135 KIEHPSAQIEKEYVIETTQDFPPELLTRFERGIRV--DGIFYKCRSAAAVNRRKLRIVLV 192 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 EG+ +++R+ + + L R RIG + L L GE+R LT +E Sbjct: 193 EGKNREIRRVLDSFNCTIKRLVRVRIGNLEL-GTLKAGEFRDLTVQE 238 >UniRef50_Q3MC44 Pseudouridine synthase n=21 Tax=Cyanobacteria RepID=Q3MC44_ANAVT Length = 288 Score = 110 bits (275), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 81/241 (33%), Positives = 126/241 (52%), Gaps = 13/241 (5%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDV-AYDGNPLAQQ--H 58 RL K +AQ SR A IR +RV ++G + K+ PE D+ DG ++ Q H Sbjct: 30 RLQKVLAQWGIASRREAEEMIRRSRVQINGTLA-ELGQKVNPERDIITVDGKSVSAQRHH 88 Query: 59 GPRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPV--AWKLHAAGRLDIDTTGLVLMTDDG 115 Y +LNKP G V + DP TVL L E + LH GRLD +TG +++T+DG Sbjct: 89 RLTYLLLNKPTGVVSTCYDPQGRKTVLDLLPEELRKGSGLHPVGRLDAYSTGALILTNDG 148 Query: 116 QWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDL-TKPAVLEVIT-PTQ 173 + ++T P H+ KTY + ++ + + + +GV L K K ++LE + ++ Sbjct: 149 DLTFKLTHPSHNIPKTYQILVKGHPPEAVLKMWREGVLLDGRKTRKAKVSLLESLAEKSR 208 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAP----GEYRPLTEEEIAS 229 + + + EGR Q++R+ +G V++LHR IG I L P G YR L ++EI S Sbjct: 209 LEIVLQEGRNRQIRRVAEQLGYPVIKLHRTAIGSIQLQTSKQPLLRAGNYRILRDDEIRS 268 Query: 230 V 230 + Sbjct: 269 L 269 >UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1DTU8_SULAA Length = 247 Score = 110 bits (275), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 72/238 (30%), Positives = 129/238 (54%), Gaps = 11/238 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVA-YDGNPLAQQHGP 60 RL+K+IA+ SR A I +V V+G+ V+N K+ P+ DV +G + Sbjct: 3 RLNKYIAKSGICSRRKADELILEGKVKVNGKTVKNLGLKIDPKKDVVEVEGKIVKPTEKK 62 Query: 61 RYFMLNKPQGYVCST--DDPDHPTVLYFLDE-PVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 Y + KP GY+ + D T+ FL+E + +KL GRLD ++ GL+++T+DG++ Sbjct: 63 IYLAIYKPVGYLSAVGKDRFGRKTLTDFLNELKIPYKLFPVGRLDYNSEGLLILTNDGEF 122 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT----PTQ 173 ++++ PR+ +K Y V + V+ +T ++ +G L E KP ++++ T Sbjct: 123 ANKVAHPRNEIKKVYKVKVAGEVSQETLKKMEEGTIL--EDGFFKPDKIKMLKREEDGTW 180 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 + + I G+ ++R + G+ V L R +IG I + +L P +YR L+E+EI S++ Sbjct: 181 LLVEIHSGKKRIIRRFMDSFGHRVKRLIRVKIGSIDI-GNLKPFDYRYLSEKEIRSIL 237 >UniRef50_D2VWU1 Predicted protein n=1 Tax=Naegleria gruberi RepID=D2VWU1_NAEGR Length = 244 Score = 110 bits (275), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 80/229 (34%), Positives = 115/229 (50%), Gaps = 20/229 (8%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRV--TVDGEIVRNAAFKLLPEH---DVAYDGNPLA 55 +R+D+ ++ SR+ IR N V T+ + + + K+ EH + +G P Sbjct: 2 LRIDRVLSGMGICSRSDVIHYIRKNEVMDTIKKQRILSLKHKI-SEHQLESLMVNGKPFP 60 Query: 56 QQHGPRYFMLNKPQGYVCSTD-DPDHPTVLYFLDEPVAWK----LHAAGRLDIDTTGLVL 110 LNKP+ Y+CST + + ++Y L P L GRLD+D+ GL++ Sbjct: 61 FPTLNLTIALNKPESYLCSTQRESSNHKIIYDLLPPEFLNRNPTLGNVGRLDLDSCGLLI 120 Query: 111 MTDDGQWSHRITSPRHHCEKTYLVTLESPVADDT-----AEQFAKG-VQLHNEKDLTKPA 164 MT DG HRI S EKTYLV P+ D E F G +QL +E KP Sbjct: 121 MTQDGDLHHRILSA--DVEKTYLVEFVPPIESDVELNQMKELFFSGDLQLRSEDSTLKPI 178 Query: 165 V-LEVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDA 212 E I P+ + ++I EG+YHQV+RMFAA VV L R +IG +TL+ Sbjct: 179 TNFEYINPSTISISIVEGKYHQVRRMFAACSKRVVGLKRIKIGDLTLEG 227 >UniRef50_Q1Q1Q0 Pseudouridine synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1Q0_9BACT Length = 260 Score = 110 bits (275), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 73/234 (31%), Positives = 124/234 (52%), Gaps = 9/234 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAY-DGNPLAQQHGP 60 RL K +A SR I RVTVDGE V + V Y DG P+ + Sbjct: 4 RLQKVLASAGIGSRRECENVILAGRVTVDGERVTALGATVDAGKSVIYCDGMPI-RPEAK 62 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y++LNKP+ +C+ D + + + V +L+ GRLD + GL+++T+DG+ S++ Sbjct: 63 IYYLLNKPKDCLCTNYDELNRLRAIDIIKNVKQRLYTIGRLDKQSEGLIIITNDGELSNK 122 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TPTQVRL 176 ++ P++ KTY + ++ ++++T GV L K T+P ++ + ++ + Sbjct: 123 LSHPKYEVNKTYFIEIDGYLSNETITALQSGVWLAFGK--TQPVRIKKMHRSFKKSRFEM 180 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EG+ +++RM A G+ V L R +IG + D DL G+YR LTE+EI S+ Sbjct: 181 ILCEGKNREIRRMLADHGHKVRTLRRIKIGSLC-DPDLKVGKYRKLTEQEIKSL 233 >UniRef50_A0PYR9 Pseudouridine synthase n=9 Tax=Clostridium RepID=A0PYR9_CLONN Length = 229 Score = 109 bits (273), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 67/232 (28%), Positives = 120/232 (51%), Gaps = 11/232 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++K ++ SR A R I NR+ V+G++ + + E D N + Sbjct: 1 MRINKLLSNYGICSRKEANRIIEQNRIIVNGKLCIPGQW--VEESDEILLDNKRIKPKKK 58 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK--LHAAGRLDIDTTGLVLMTDDGQWS 118 Y +LNKP G C++ ++ F V ++ + GRLD + GL+++T+DG+ S Sbjct: 59 VYILLNKPVGITCTSSKDIKANIIDF----VNYRDYIFPVGRLDKKSEGLIILTNDGELS 114 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 ++I + EK Y+V ++ P D+ E +KGVQL K T+ ++ I ++ + Sbjct: 115 NKILESENMHEKEYVVKVDKPFDDEFIENMSKGVQLKGVK--TRTCIVRRIDECTFKIIL 172 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 ++G Q+++M A G VV+L R RI + +D + G +R TE+E+ ++ Sbjct: 173 TQGLNRQIRKMTRAFGYTVVKLKRIRIMNLKIDG-IDIGSFRHFTEDELNNI 223 >UniRef50_Q11U12 Pseudouridine synthase n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11U12_CYTH3 Length = 281 Score = 109 bits (272), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 70/229 (30%), Positives = 120/229 (52%), Gaps = 10/229 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDG--EIVRNAAFKLLPEHDVAYDGNPLAQQH 58 M +++F+ ++ +S+ A + N+V ++G + RN K +H V +G L + Sbjct: 59 MNINEFLIKRFHISKDKASNMVLENQVFINGVKALQRNDVLK--SDHIVV-NGEVLQEGR 115 Query: 59 GPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y+ KP+G C+ + +L+ L P ++ GRLD ++ GL+L+T+DG+ Sbjct: 116 NFTYYAYYKPRGIECTLNAAIENNLLHTL--PFGEHVYPVGRLDKESEGLLLLTNDGKLY 173 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 I + EK YLV ++ P+ D+ EQ + G+ + +K T+PA + ++T R+ + Sbjct: 174 KDIAFSDNFKEKEYLVEVDKPLTDEAVEQLSSGIVIMGQK--TRPARVSMVTEHSFRIIL 231 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 ++G Q++RM + V L R RI I L DL PG YR LT EI Sbjct: 232 TQGLNRQIRRMCYKLRYEVTMLKRIRITSIEL-GDLKPGAYRVLTRAEI 279 >UniRef50_O05668 Uncharacterized RNA pseudouridine synthase ML1370 n=49 Tax=Actinomycetales RepID=Y1370_MYCLE Length = 256 Score = 109 bits (272), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 82/233 (35%), Positives = 119/233 (51%), Gaps = 7/233 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL K +++ SR A + I RV VDG++VR ++ P+ V Sbjct: 16 VRLQKILSRAGIASRRAAEKLIIEGRVEVDGQLVRELGTRVDPDVSVVRVDGVKVVVDDS 75 Query: 61 R-YFMLNKPQG-YVCSTDDPDHPTVLYFLDEPVAW--KLHAAGRLDIDTTGLVLMTDDGQ 116 Y LNKP+G Y +DD P V ++ V KL GRLD DT GL+L+T+DG+ Sbjct: 76 LVYLALNKPRGMYSTMSDDRGRPCVGDLIERRVRGNKKLFHVGRLDADTEGLILLTNDGE 135 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNE-KDLTKPAVLEVI-TPTQV 174 +HR+ P H KTYL T++ V ++ + G++L + + AV++ I T V Sbjct: 136 LAHRLMHPSHEVSKTYLATVKGAVPRGLGKKLSVGLELDDGPAHVDDFAVVDAIPGKTLV 195 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 RLT+ EGR V+R+ A G V L R IG ++L D PG R L +EI Sbjct: 196 RLTLHEGRKRIVRRLLTAAGFPVEMLVRTDIGAVSL-GDQRPGCLRALLRDEI 247 >UniRef50_B0B8U9 Pseudouridine synthase n=10 Tax=Chlamydiales RepID=B0B8U9_CHLT2 Length = 241 Score = 109 bits (272), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 68/233 (29%), Positives = 117/233 (50%), Gaps = 6/233 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+KF+A SR I VTV+G + + E D G Sbjct: 4 VRLNKFLASAGVASRRKCDEIIFAGSVTVNGRVATGPFVTVDEEFDSVEVGGQRIGAEKK 63 Query: 61 RYFMLNKPQGYVCSTDD--PDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 YFM++KP GY+CS++ P V+ L ++L GRLD +T+GL+L+T+DG+++ Sbjct: 64 VYFMVHKPLGYLCSSERKFPGSKLVIDLLSH-CPYRLFTVGRLDKETSGLILVTNDGEFA 122 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 +R+ P K YL+ + V E G + + + +P ++ + +++ + Sbjct: 123 NRVIHPSFGITKEYLLKVSRDVTARDLETLMAGTVIDGK--VVRPVSVKKVRRGTIKIIV 180 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 +EG+ H+++ A G ++EL R RIG + L L G+YR LT+ E+ S + Sbjct: 181 NEGKKHEIRLFAEAAGLQLLELKRIRIGSLVL-GGLPYGKYRELTDSELDSCL 232 >UniRef50_UPI00016C3D27 ribosomal large subunit pseudouridine synthase B n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3D27 Length = 271 Score = 109 bits (272), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 75/233 (32%), Positives = 121/233 (51%), Gaps = 7/233 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL+K++A SR + I RV V+G V K+ P H +A D P+ + Sbjct: 3 RLNKYLAHAGVGSRRHCDKLISAGRVKVNGVKVTELGLKIDPSAHQIAVDDQPVRAEK-L 61 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y+ +NKP G++C+ DP P + L V +++ GRLD + GL+LMT+DG + Sbjct: 62 VYWAVNKPVGHLCTNHDPAGRPRAVDLLPH-VEQRVYTVGRLDEGSDGLLLMTNDGDLAQ 120 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPA--VLEVITPTQVRLT 177 +T PR+ K Y V + DD ++ GV L + K K A + T VR+ Sbjct: 121 GLTHPRYGVPKMYFVLVAGRPTDDDLQKLMDGVWLSDGKVRAKSAKRIKAQGNGTWVRVV 180 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 ++EG+ +++RM A G+ V+ L R IG + LD L G+ R +++EE+ ++ Sbjct: 181 LTEGKNREIRRMLAKFGHKVMRLKRVAIGPVKLD-KLPKGKARRISDEELKAL 232 >UniRef50_B3L0G1 Pseudouridine synthetase, putative n=1 Tax=Plasmodium knowlesi strain H RepID=B3L0G1_PLAKH Length = 328 Score = 109 bits (272), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 65/268 (24%), Positives = 132/268 (49%), Gaps = 38/268 (14%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQ---- 56 +RL+K I+ + +SR + I+ V ++ ++V+N + D L Sbjct: 56 VRLNKIISMEKKISRRKSDEFIKDGNVKLNNKVVKNPGTHIDVSKDKIKISGKLVNIVRT 115 Query: 57 --------QHGPRYFMLNKPQGYVCSTDDPDHPTVLYFL---DEPVAWKLHAAGRLDIDT 105 + ++F+L+KP+G++C+++D +Y L D ++L + GRLD +T Sbjct: 116 QKMINRNDNNFYKWFVLHKPKGFLCTSNDEKDRASIYSLFPQDIMDNYRLVSVGRLDRNT 175 Query: 106 TGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEK------- 158 +G++L+T++ W +++T P++ +TY V +E P +Q A G+ L ++ Sbjct: 176 SGVLLLTNEYAWVNKLTHPKYQRIRTYRVHIEGPAQMKVLKQLATGIYLQDDNRGKENKK 235 Query: 159 ----DLTKPAVLEVITPTQVR------------LTISEGRYHQVKRMFAAVGNHVVELHR 202 T+PA +E++ ++ +++ EGR Q+++MF + V+++ R Sbjct: 236 IVKKKRTQPAFIEILREETIKVKDQVKKVSVLNISVREGRNRQIRKMFEQINQPVIKIKR 295 Query: 203 ERIGGITLDADLAPGEYRPLTEEEIASV 230 ITL P +YR LT+ EI+++ Sbjct: 296 TAFENITLKDVFFPKQYRELTQREISNL 323 >UniRef50_Q4AAG8 Pseudouridine synthase n=6 Tax=Mycoplasma RepID=Q4AAG8_MYCHJ Length = 240 Score = 109 bits (272), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 65/233 (27%), Positives = 128/233 (54%), Gaps = 11/233 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDV-AYDGNPLAQQHG 59 +R++KF+++ SR + + I R+ ++ E + +++ ++DV D + ++ Sbjct: 4 IRINKFLSEMGVCSRRQSEKLILQGRIKINNETAKIG--QIISQNDVIELDQQKITKKPP 61 Query: 60 PRYFMLNKPQGYVCSTDDPDH-PTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 ++ LNKP+ Y+ S DP++ PT++ F + L GRLD TTGL+L+T+DG+ + Sbjct: 62 IFWYALNKPKNYITSRFDPENRPTIMEFFSKNEY--LFPVGRLDFQTTGLILITNDGKTT 119 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFA-KGVQLHNEKDLTKPAVLEVITPTQVRLT 177 +++ P E+TYLV + ++D +QL + K + K ++ + +T Sbjct: 120 NKLLHPSSKIERTYLVKTDFSLSDKEIRFLNDNKIQLDSVKSIQK---IKKCSSRTYLVT 176 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + +G H +K++F ++ V++L R I LD +++ G+YR LT +EI S+ Sbjct: 177 VWQGSNHHIKKLFLSISKKVLKLKRVSFANIKLD-NISEGKYRKLTNQEIKSL 228 >UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C4P7_9PLAN Length = 352 Score = 108 bits (271), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 75/241 (31%), Positives = 121/241 (50%), Gaps = 21/241 (8%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +RL KF+A SR I RV+VDG+++ K+ PE + DG + Q Sbjct: 23 IRLQKFLAATGLGSRRHCEEYIETGRVSVDGDVITELGAKIDPETQFIEVDGERVRLQP- 81 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 RY++LNKP G++C+ +DP + L +L GRLD ++ GL+L+T+DG+ + Sbjct: 82 RRYYLLNKPSGFLCTNNDPAGRRRVVDLFPNDGQRLFTVGRLDENSEGLILVTNDGELAQ 141 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNE----------KDLTKPAVLEVI 169 R+ PR+ +TY V + + ++ KGV+ K K A LE Sbjct: 142 RLAHPRYRVARTYHVQVVGNPPREKLDELRKGVRFKEGVFRVSGLKYLKKQGKSAFLE-- 199 Query: 170 TPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 LT+ EG+ +++RM A +G+ V++L R R G + L L GE R L++ E+ Sbjct: 200 ------LTLHEGQNREIRRMMARIGHKVIQLVRIRFGPLNL-GKLKTGESRRLSDTELKK 252 Query: 230 V 230 + Sbjct: 253 L 253 >UniRef50_B3PMD0 Pseudouridine synthase n=2 Tax=Mycoplasma RepID=B3PMD0_MYCA5 Length = 251 Score = 108 bits (270), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 68/232 (29%), Positives = 122/232 (52%), Gaps = 9/232 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +++ K I+Q SR A I+ R+ ++ ++ ++L + + DG L + Sbjct: 12 IKIQKAISQVGYCSRRQAEELIKQKRIKINHQVA-TLGQRVLADDQIFIDGKKLNIKPPK 70 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHA--AGRLDIDTTGLVLMTDDGQWS 118 Y + NKP+ +C+ DP+ +Y E + K +A GRLD ++TG++L+T+DG ++ Sbjct: 71 FYLVFNKPKNTICTLKDPEKRKTIY---EYMGLKEYAYSVGRLDFNSTGIILVTNDGDFA 127 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 + I P + ++ Y V LE +++ + N K ++ L + P + +++ Sbjct: 128 NLIAHPSANIKRVYEVVLEKELSEGDFNYLNSNKVILNGKKSSQS--LSKLAPFKYSVSL 185 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EGR H VK +F V N+V ELHR G IT DA+L G+ R L+E E+ ++ Sbjct: 186 YEGRNHHVKNLFLLVNNYVKELHRVSYGPIT-DANLKIGKTRHLSESEVQNL 236 >UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2G3_SALRD Length = 249 Score = 108 bits (270), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/236 (33%), Positives = 121/236 (51%), Gaps = 16/236 (6%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGN---PLAQQ 57 MR++K+IA SR A + RV +DGE V + V DG PL + Sbjct: 11 MRINKYIAHAGVCSRRDADDLVEQGRVHIDGERVDQHGTCVREGQTVTVDGEEVYPLEFE 70 Query: 58 HGPRYFMLNKPQGYVCSTDDP-DHPTVLYFL----DEPVAWKLHAAGRLDIDTTGLVLMT 112 Y +LNKP+ + +TDDP D TVL + D P L GRLD +TTG++L++ Sbjct: 71 ----YLLLNKPKDTISTTDDPKDRRTVLDAIGVPEDNPSG--LFPVGRLDRNTTGVLLVS 124 Query: 113 DDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHN-EKDLTKPAVLEVITP 171 +DG +HR+ PR+ K Y V ++ V +Q +GV+L + + A L+ Sbjct: 125 NDGDLAHRLMHPRYEIPKIYYVRVQDDVKPHQLDQLKRGVELSDGAAAADQVAYLDPQRK 184 Query: 172 TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 T + L + EGR Q++RM A+G+ +V+L R + +T L GE+R L EE+ Sbjct: 185 TDIALELHEGRNRQIRRMMEALGHTIVQLERAKYATLTT-GRLQRGEWRRLEPEEV 239 >UniRef50_A6BG46 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A6BG46_9FIRM Length = 216 Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 66/188 (35%), Positives = 97/188 (51%), Gaps = 27/188 (14%) Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 P Y+M +KP G V + D +PTV+ + +E +L GRLD +TTGL+L+TDDG ++ Sbjct: 23 PHYYMFHKPFGCVTARRDDRYPTVMDYFEELQNDRLSPVGRLDRETTGLLLITDDGIFNQ 82 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEV----------- 168 ++T P +H EKTY TL + + + GV L LT PA + V Sbjct: 83 KLTHPSYHKEKTYEFTLLGDLTPELVHKLETGVILKGADTLTAPAKITVTGHAVMSDILS 142 Query: 169 ITPTQVR----------------LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDA 212 P +++ +TISEG+ Q++RM +V V+EL R IG I LD Sbjct: 143 TLPEEIQKDIHKNRPDHPITYGIITISEGKKRQIRRMMKSVHCCVIELKRISIGDIVLDK 202 Query: 213 DLAPGEYR 220 L PGE++ Sbjct: 203 ALCPGEWK 210 >UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y027_PEDHD Length = 472 Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/235 (31%), Positives = 127/235 (54%), Gaps = 9/235 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +RL+++I+ SR A I V+V+GE+V K+ P D V Y+G L ++ Sbjct: 237 IRLNRYISNSGICSRRKADELIEAGVVSVNGEVVSELGHKIDPVKDQVRYNGE-LLKREK 295 Query: 60 PRYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y +LNKP+ Y+ +TDDP + TV+ +++ +++ GRLD +TTGL+LMT+DG + Sbjct: 296 KIYVLLNKPKDYITTTDDPQERRTVMQLVEKASRERIYPVGRLDRNTTGLLLMTNDGDLA 355 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT---PTQVR 175 +++ P++ K Y V L ++ + G++L E + KP + +T +V Sbjct: 356 DKLSHPKNGITKIYHVELSRSLSQGDLNKIQFGLEL--EDGIIKPDSVSYVTGGSKREVG 413 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + I G+ V+R+F +G VV+L R G +T DL G +R L E E+ + Sbjct: 414 IQIHSGKNRIVRRIFEHLGYDVVKLDRVVYGNLTK-KDLPRGRWRYLEEHELIQI 467 >UniRef50_C7RHU0 Pseudouridine synthase n=3 Tax=Anaerococcus RepID=C7RHU0_ANAPD Length = 233 Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 73/232 (31%), Positives = 119/232 (51%), Gaps = 6/232 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++K+IA SR A ++ +V V+GE + V DG L + Sbjct: 1 MRINKYIASSGYTSRRKADDLVKKGKVKVNGETTHELGLDIKDSDVVEIDGKVLEIEEKI 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y L KP+GY+ S DP + L L + + AAGRLD D+ GL+++T+DG ++++ Sbjct: 61 -YIKLYKPRGYITSNFDPYNDRDLNDL-VKLDQRFFAAGRLDKDSEGLLIITNDGIFTNQ 118 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ--VRLTI 178 I P +KTY+V + + + +QF G+ + + ++T + +E+I T ++TI Sbjct: 119 IIHPSKKLDKTYIVRVSRLLNKEECQQFESGIDI-GDSEMTSDSRIELIDKTSKTYKVTI 177 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +G Q++RMFA + V L R IG I LD + P E R + E+ V Sbjct: 178 HQGYNRQIRRMFAYFSSEVKMLKRISIGPIKLDG-MKPYEKRNFDQAEMDFV 228 >UniRef50_A0JV58 Pseudouridine synthase n=37 Tax=Actinobacteridae RepID=A0JV58_ARTS2 Length = 406 Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 75/232 (32%), Positives = 115/232 (49%), Gaps = 5/232 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAY-DGNPLAQQHG 59 +RL K +A SR + I RV VDG++V ++ P+ V + DG + Sbjct: 168 IRLQKVMASAGVASRRVCEEMISEGRVEVDGKVVTELGVRVDPKTAVIHVDGLRIQLDEN 227 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y + NKP+G V + +DPD P + F+ +L GRLD+ T GL+L+T+DG+ + Sbjct: 228 MVYMVFNKPKGVVSTMEDPDGRPCISDFVRNTHGERLFHVGRLDVATEGLLLLTNDGELA 287 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQV--RL 176 +R+T P + KTYLV + P Q GV+L + L TP V + Sbjct: 288 NRLTHPSYEVPKTYLVQVRGPFPQGIGAQLKAGVELEDGMASVDSFKLVDSTPGHVLIEV 347 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 + G+ V+R+F AVG V+ L R ++G I L D G R L ++E+ Sbjct: 348 VLHSGKNRIVRRLFDAVGFPVLRLVRVKVGPIGL-GDQRQGSIRNLGKQEVG 398 >UniRef50_Q6SI36 Pseudouridine synthase n=1 Tax=uncultured marine bacterium 105 RepID=Q6SI36_9BACT Length = 255 Score = 108 bits (269), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/240 (30%), Positives = 123/240 (51%), Gaps = 12/240 (5%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL K +A SR A R I RVTV+G V K P+ D+ DG + Sbjct: 6 VRLQKVLASAGISSRRAAERLIEVGRVTVNGRSVTKLGAKADPDLDDIRVDGRKVKTGRP 65 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y ++ KP+GYV + DP+ + L V ++ GRLD D+ GLV++T+DG + Sbjct: 66 RIYLLVCKPRGYVTTRFDPEGRRTILNLISNVREYVYPVGRLDYDSEGLVILTNDGTLAA 125 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ------ 173 R+T PR+ E+ Y V + + + GV ++ + T + ++ + + Sbjct: 126 RLTHPRYGVERVYEVRVRGVPSQAAIDSLRHGVLINGRR--TASSSVKFLRRLKAKSSEN 183 Query: 174 --VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 +R+ I EGR QV++M A+G+ V+ L R +IG + D+ L G++R LT E+A+++ Sbjct: 184 ALLRVAIREGRNRQVRKMCEAIGHPVIRLRRTQIGPLR-DSSLKVGKHRLLTTSEVAALM 242 >UniRef50_A3HY40 Pseudouridine synthase n=1 Tax=Algoriphagus sp. PR1 RepID=A3HY40_9SPHI Length = 434 Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 74/229 (32%), Positives = 121/229 (52%), Gaps = 5/229 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 RL+K+IA SR A I V+V+G++V K+ V Y G + + P Sbjct: 202 FRLNKYIANSGICSRREADDLIAKGLVSVNGKVVTELGLKVSKFDRVVYQGKKINPEK-P 260 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ ++ +TDDP + TV+ + ++ GRLD +TTGL+L T+DG+ + Sbjct: 261 VYVLLNKPKDFITTTDDPLERKTVMALVGNACEERIFPVGRLDRNTTGLLLFTNDGELAA 320 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHN-EKDLTKPAVLEVITPTQVRLTI 178 +++ P + +K Y VTL+ P+ + + +G+ L + E ++ VL V + L I Sbjct: 321 KLSHPSNQIKKIYQVTLDKPLTHNDEKDILEGLTLEDGEVEVDDMQVLSVDRKI-LGLEI 379 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 G+ V+R+FA +G V L R G+ DL G YR L+E+E+ Sbjct: 380 HVGKNRIVRRIFAHLGYEVTALDRVMYAGLD-KKDLKRGNYRFLSEQEV 427 >UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae RepID=B3QY10_CHLT3 Length = 297 Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 122/233 (52%), Gaps = 6/233 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +RL+KFIA SR A I V V+G++V +K+ D V +G L + Sbjct: 43 IRLNKFIALCGEASRRKADEMIEQGEVMVNGKVVMELGYKVDRRADEVVVNGKKLHENTQ 102 Query: 60 PRYFMLNKPQGYVC-STDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y +LNKP+ V S+D+ TV+ + + ++ GRLD DTTG++L+T+DG + Sbjct: 103 KIYILLNKPKDVVTTSSDEKSRKTVVELVG--LKDRVFPVGRLDRDTTGVLLLTNDGDLT 160 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT-QVRLT 177 +R+T P +K Y+ TL+ + + KG +L + + P ++ + + Sbjct: 161 YRLTHPTFGVQKQYVATLDKKITSVDLQNIKKGFRLKDTGEKVSPCNARILDDGYTIWVA 220 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I EG+ HQ+ RMF + G +V +L R GG+ + + GE+R LT+ E++ + Sbjct: 221 IHEGKNHQIHRMFWSFGYNVKKLVRVAYGGLEV-GTMRRGEWRFLTQLEVSKL 272 >UniRef50_C9L6I1 Pseudouridine synthase n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L6I1_RUMHA Length = 271 Score = 107 bits (268), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 123/227 (54%), Gaps = 6/227 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL+K+++ SR A R I RV VDG+ ++ ++ DG + ++ Sbjct: 1 MRLNKYLSDAGVCSRREADRLIEEKRVLVDGKPA-VQGMQVEDFQEIKVDGKAIKREEKK 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 + +KP+G C+ + V+ +++ P+ +++ AGRLD D+ GL+L+T+ G+ ++ Sbjct: 60 VLLVFHKPKGIECTANPNVKKNVISYINYPI--RVYYAGRLDKDSEGLLLLTNQGELVNQ 117 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 I + EK YLVT++ PV ++ + +GV + +T+ +E + R+T+++ Sbjct: 118 IMKAGSYHEKEYLVTVDKPVTEEFLQSMREGVPVLG--TITRKCKVEKESEKVFRITLTQ 175 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 G Q++RM +G VV+L R RI I L +L G YR T+EE+ Sbjct: 176 GLNRQIRRMCNYLGYEVVKLKRIRIMNIEL-GNLPIGSYREATKEEL 221 >UniRef50_B3DRY9 Pseudouridine synthase n=7 Tax=Bifidobacterium RepID=B3DRY9_BIFLD Length = 256 Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 77/234 (32%), Positives = 119/234 (50%), Gaps = 5/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 +RL K +AQ SR I RV VDGE+V ++ P + V DG+ + Sbjct: 18 IRLQKLLAQAGFGSRRKCEDMITEGRVEVDGELVTELGTRVDPHKQQVRVDGSRVRVNPN 77 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 LNKP+ + + DDP L + ++ GRLD D+ GL+LMT+DG+ S Sbjct: 78 HVTLALNKPRKVLSAMDDPKGRYTLRDIVGDKYERIFHMGRLDYDSEGLILMTNDGELSQ 137 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQF-AKGVQLHNE-KDLTKPAVLEVITP-TQVRL 176 + P++ EKTY+ TLE ++ + GVQL + L A+++ T V++ Sbjct: 138 HVMHPKYEVEKTYVATLEGKISGTVCRRLVTTGVQLDDGWIKLDHCAIIDSSRDHTMVKV 197 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + G+ V+R+F ++G V L R +IG I L DL PG YR L++ E+ S+ Sbjct: 198 VLHSGKNRIVRRIFGSIGFPVKRLVRTQIGPIKL-GDLKPGSYRVLSQTEVRSL 250 >UniRef50_B9HLH3 Predicted protein n=5 Tax=Magnoliophyta RepID=B9HLH3_POPTR Length = 397 Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/249 (28%), Positives = 128/249 (51%), Gaps = 23/249 (9%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAY-DGNPLAQQHGP 60 RL K +A SR + I +VTV+G + ++ P D Y +GN L ++ P Sbjct: 148 RLSKVLAAAGVASRRSSEALIFEGKVTVNGSVCNTPQTRVDPGRDSIYVNGNRLPKKLPP 207 Query: 61 R-YFMLNKPQGYVCSTDDPDHPTVLYFLDEPV-AW----------KLHAAGRLDIDTTGL 108 + Y LNKP+GY+CS + + +V+ LD+ +W +L GRLD+ TTGL Sbjct: 208 KIYIALNKPKGYICSLGEKESKSVMCLLDDYFQSWDKRNPGLPKPRLFTVGRLDVATTGL 267 Query: 109 VLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEV 168 +++T+DG ++ +I P + K Y+ T++ V+ ++G + + + P +E+ Sbjct: 268 IIVTNDGDFAQQIAHPSSNLSKEYIATVDGVVSKRHLFAVSEGTVIEGVRCV--PDSVEL 325 Query: 169 ITPTQ-------VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRP 221 + P Q +R+ + EGR H+V+ + G + L R RIGG L +DL G++ Sbjct: 326 L-PQQPDRPRPRLRIVVHEGRNHEVRELVKNAGLEIHSLKRVRIGGFRLPSDLGLGKHAE 384 Query: 222 LTEEEIASV 230 L + ++ ++ Sbjct: 385 LKQTDLKTL 393 >UniRef50_Q4Z2R8 Pseudouridine synthetase, putative n=3 Tax=Plasmodium (Vinckeia) RepID=Q4Z2R8_PLABE Length = 318 Score = 107 bits (268), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 65/268 (24%), Positives = 133/268 (49%), Gaps = 38/268 (14%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKL------LPEHDVAYDGNPL 54 +RL+K I+ +SR + + I+ + ++ ++V N + + HD D + Sbjct: 46 IRLNKLISINNNISRRKSDKFIQNANIKINNKVVLNPGTHVDITKDQIKVHDKKIDIENI 105 Query: 55 AQ-----------QHGPRYFMLNKPQGYVCST-DDPDHPTVLYFL--DEPVAWKLHAAGR 100 + + ++ +++KP+G +C+ D+ D ++ D +++ + GR Sbjct: 106 KKILNNYNISNTNHNSYKWIVMHKPKGLICTNQDEKDRKSIFSIFPDDLLQKYRIVSVGR 165 Query: 101 LDIDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKD- 159 LD +T+G++L T++ W +++T P++ + Y++ +E PV D + A GV L +E + Sbjct: 166 LDRNTSGVLLFTNEYTWVNKLTHPKYERVRKYMIHIEGPVRMDALKMLANGVYLKDEDNN 225 Query: 160 -----LTKPAVLEVITPTQVR------------LTISEGRYHQVKRMFAAVGNHVVELHR 202 T+PA +EV+ V+ ++I EGR Q+++MF + +V++ R Sbjct: 226 KKKKKKTQPAFIEVLREENVKIQNQIKKITVLNISIKEGRNRQIRKMFQQINQPIVKIKR 285 Query: 203 ERIGGITLDADLAPGEYRPLTEEEIASV 230 ITL P +YR LT++EI ++ Sbjct: 286 TAFENITLKNIHLPKQYRELTKKEIINL 313 >UniRef50_A0M7H0 Ribosomal large subunit pseudouridine synthase F n=4 Tax=Flavobacteriales RepID=A0M7H0_GRAFK Length = 295 Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 72/233 (30%), Positives = 119/233 (51%), Gaps = 6/233 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+K+IA SR A I VTV+G+ + +++ E DV +DG L + P Sbjct: 63 IRLNKYIANSGVCSRRDADMYIAAGNVTVNGKSITEMGYRVKLEDDVRFDGRRLNPEK-P 121 Query: 61 RYFMLNKPQGYVCSTDDPDH--PTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y +LNKP G+ T +P+ TV+ + + K+ G+LD GL+L T+DG + Sbjct: 122 EYILLNKPAGFFV-TGNPEKGGKTVMELVARTTSAKVSPVGKLDNQAKGLLLFTNDGTLA 180 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDL-TKPAVLEVITPTQVRLT 177 ++ P++ + Y VTL + + E KGV + K L T + +E +V + Sbjct: 181 KKLAKPKNGIRQIYQVTLNKNLTKEDLEGIEKGVYIEGSKVLITSISFIEDKPHNEVGIE 240 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + + H V R+F ++G V L R GG+T DL G +R LT++E+ ++ Sbjct: 241 LYSIKEHIVTRIFKSLGYEVESLDRVVFGGLT-KKDLPRGRHRNLTKQEVINL 292 >UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3ESK0_9BACT Length = 616 Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 86/236 (36%), Positives = 126/236 (53%), Gaps = 14/236 (5%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +RL K +A + SR A IRG V V+G +V K+ PE D V DG + + Sbjct: 18 IRLQKLLAHRGLASRRNAEEMIRGGLVKVNGIVVTVPGTKVHPETDRVTVDGKTVPVEPE 77 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVL--YFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 P F+ KP+G V + DPD T L +F P L GRLDI + G++L+T++G Sbjct: 78 PFLFLFYKPKGIVSTLHDPDEKTTLKDFF---PQINPLIHVGRLDIQSEGVLLLTNNGDL 134 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKG-VQLHNEKDLTKPAVLE----VITPT 172 + RI PR+ +TYLV ++ V + ++ G V+L +P LE T + Sbjct: 135 AQRILHPRYEIPRTYLVKVQGVVKPEHLDRLRSGKVRLDGRP--VQPLELEQERLTETNS 192 Query: 173 QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 R+T++EGR +V+R+F A+ V++L R G + L A L PGEYR +T EEIA Sbjct: 193 WYRITLTEGRNREVRRLFDALHYFVLKLTRIAFGNLDL-AGLEPGEYRLVTPEEIA 247 >UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes RepID=C7M7R0_CAPOD Length = 387 Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 123/234 (52%), Gaps = 8/234 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+K+IA SR A I VTV+GE++ +++ P +V +DG L+ + Sbjct: 154 VRLNKYIADAGICSRRNADMYISAGNVTVNGEVMTTLGYRVKPTDEVRFDGKLLSSEK-K 212 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+G++ +T+D TV+ + ++ GRLD TTGL+L+T+DG+ + Sbjct: 213 EYILLNKPKGFITTTNDEKGRKTVMDLVANATNVRILPVGRLDRATTGLLLLTNDGELTK 272 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT---PTQVRL 176 ++T P H K Y V L+ + + G++L E L + + + ++ + Sbjct: 273 KLTHPTHGVRKIYHVILDRKLDYKDFMKVQDGLEL--EDGLIEVDEISYVNDKPKNEIGI 330 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I GR V+R+F +G V +L R G+T DL G +R LT++E+ ++ Sbjct: 331 KIHSGRNRIVRRIFEHLGYQVEKLDRVVFAGLT-KKDLPRGHWRRLTQQEVINL 383 >UniRef50_Q14P18 Pseudouridine synthase n=2 Tax=Mollicutes RepID=Q14P18_SPICI Length = 267 Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 65/174 (37%), Positives = 101/174 (58%), Gaps = 11/174 (6%) Query: 62 YFMLNKPQGYVCSTDDPDH-PTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y MLNK + V + DP H TVL ++ + ++ +++ GRLD DT+GL+L+T+DG++++ Sbjct: 62 YLMLNKRRNCVSTMYDPQHRKTVLTYV-KGISERIYPVGRLDYDTSGLLLLTNDGEFTNI 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQL-------HNEKDLTKPAVLEVITPTQ 173 IT P H KTY V L ++ +Q A G+++ + L K EV + Sbjct: 121 ITHPSHIINKTYHVLLSGYLSKQQLQQLATGIEIEPGIIRSQAQAKLVKYE--EVKNVSI 178 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 + LTI E HQVK+M ++G+ V++L R IG + LD L PGE+R L +EI Sbjct: 179 LLLTIHEVTKHQVKKMIQSLGHEVIKLKRIAIGFLQLDETLKPGEWRYLKPKEI 232 >UniRef50_A9NFY3 Pseudouridine synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFY3_ACHLI Length = 236 Score = 107 bits (267), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 74/234 (31%), Positives = 118/234 (50%), Gaps = 8/234 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL+ +I++ SR A I R+ V+G + ++ V D N + Sbjct: 1 MRLNLYISKTGVASRRGADSLIEHGRIKVNG-VTAVLGMQITKNDVVTLDNNIIEPLEEK 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +LNKP G V +T+ ++ F++ K+ GRLD D+ GL+L+T+DG ++ Sbjct: 60 FYILLNKPVGIVSTTNTAISGNMITFMN--FKEKIFPVGRLDKDSHGLILLTNDGSIVNK 117 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHN----EKDLTKPAVLEVITPTQVRL 176 I + +K Y VTL P D E GV+++N EK +T P++L+ + L Sbjct: 118 ILRVENGHDKEYHVTLNKPYDDYFIETMTSGVEIYNPVAHEKQMTMPSILKPLDERTFSL 177 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 TI +G Q++RM ++G V L R RI +TL DL G +R LT +E+ + Sbjct: 178 TIRQGLNRQIRRMADSLGYRVESLERVRIMHLTL-GDLPVGYWRYLTSDELKEL 230 >UniRef50_A9NHG2 Ribosomal small subunit pseudouridine synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NHG2_ACHLI Length = 231 Score = 107 bits (266), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 71/230 (30%), Positives = 112/230 (48%), Gaps = 5/230 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF++ SR ++ V V V+++ K+ P +D + Sbjct: 1 MRLDKFLSNLNYGSRKEIKLMVKNGLVKVGNLTVKSSDVKIDPNYDKIFVNGTEVIYKEN 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPV-AWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 KP GY+ S +P++ + P + L AGRLD D+ GLV++T G H Sbjct: 61 VILSFYKPAGYLSSHKAEIYPSLFELIGAPYNQYDLKIAGRLDYDSEGLVILTTSGDLVH 120 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAV-LEVITPTQV-RLT 177 +IT P+ K Y L+ + + + +GV++ E + + L++ V +T Sbjct: 121 QITHPKKKIRKVYEAKLDKHFNESSKLKLLQGVEIMGEDGMPYIGIALDLHYKEDVAYIT 180 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 I EG++HQVK+MF VG V L R +IG +TL DL PG Y+ + E +I Sbjct: 181 IDEGKFHQVKKMFLEVGFLVTNLKRIQIGALTL--DLEPGTYKEIEENDI 228 >UniRef50_D1B9Q8 Pseudouridine synthase n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B9Q8_THEAS Length = 234 Score = 107 bits (266), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 70/215 (32%), Positives = 122/215 (56%), Gaps = 12/215 (5%) Query: 1 MRLDKFIAQ-QLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDG---NPLAQ 56 MRL++++A+ LG R + + G RV ++G +V + ++ V DG +PL + Sbjct: 1 MRLNQYLARCGLGSRRKVEALIVTG-RVKLNGLVVSDLGCRVEEGDHVEVDGCSVHPLDK 59 Query: 57 QHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPV-AWKLHAAGRLDIDTTGLVLMTDDG 115 Y ++NKP+G VC+ +D + TVL L + A + GRLD ++ GL+++T+DG Sbjct: 60 I----YIVMNKPRGVVCAVEDRRYRTVLDLLPPQIRALRPFPVGRLDKESQGLLILTNDG 115 Query: 116 QWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVR 175 + I PR KTY VT++ V ++ ++ GV ++ ++ +P ++ ++ P VR Sbjct: 116 DFCDAILHPRRGIIKTYEVTVDRDVPSESLDRLKGGVW--SDGEILEPLMVSLMGPRTVR 173 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITL 210 + I EG+ +V+RM AA+G V+ L R RIG + L Sbjct: 174 VDIQEGKKREVRRMMAALGFKVLSLLRRRIGKMEL 208 >UniRef50_D0MUX7 Ribosomal large subunit pseudouridine synthase F, putative n=1 Tax=Phytophthora infestans T30-4 RepID=D0MUX7_PHYIN Length = 293 Score = 107 bits (266), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 79/246 (32%), Positives = 120/246 (48%), Gaps = 26/246 (10%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL K +AQ+ SR A I+ V VDGE V+ K+ + DV+ D Q+ Sbjct: 44 VRLAKLMAQKGLCSRREAEAYIQAGDVLVDGERVQADWLKVPVDSDVSLDFRAQRHQNKK 103 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLD-----------------EPVA-WKLHAAGRLD 102 +LNKP GYV S + + + L EPVA WK+ GRLD Sbjct: 104 VTLVLNKPLGYVSSQPELNKTPAVRLLTFENECQELSRVKPRQNVEPVALWKMAVCGRLD 163 Query: 103 IDTTGLVLMTDDGQWSHRITSPRHHCEKTYLVTLE---SPVADD---TAEQFAKGVQLHN 156 +++TGL+L T DG + ++ P+ EK YLV ++ P+ D E GV + Sbjct: 164 VNSTGLLLFTQDGTVAKKLLDPKGGIEKEYLVRVDLNLDPLTDKIRRKIEVLQAGVT-SD 222 Query: 157 EKDLTKPAVLEVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAP 216 E + +E++ Q+R+ ++EG+ ++RM VG V+ L R RIGG+ L L Sbjct: 223 EGITYRAKSVEILNANQLRVVLTEGKNRHIRRMCEHVGLRVMALKRVRIGGVKL-GSLPV 281 Query: 217 GEYRPL 222 G++R L Sbjct: 282 GQWRYL 287 >UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1D5Q2_MYXXD Length = 745 Score = 107 bits (266), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 79/232 (34%), Positives = 117/232 (50%), Gaps = 10/232 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 RL K++A+ SR A I RV V+ + V ++ P D V DG + Sbjct: 5 RLQKYLARAGVASRRHAEELITAGRVAVNNKTVTELGSRVEPGTDLVTVDGTLVTPPDES 64 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 YF+L KP G V + DP PTV +++E +L GRLD D G +L TDDG +H Sbjct: 65 SYFLLYKPVGVVTTLSDPQGRPTVANYVEE-TGKRLFPVGRLDYDAEGALLFTDDGALAH 123 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP----TQVR 175 ++T P +TYL ++ T ++ GV+L E + P + V T ++ Sbjct: 124 KLTHPSFQVPRTYLAKVKGAPDTATLDKLRGGVRL--EDGMATPVSVSVFEAAERNTWLK 181 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 + ++EGR H +KR+ AAVG+ VV L R G+ ++ L PGE RPL E+ Sbjct: 182 IVVAEGRPHLIKRLCAAVGHPVVRLFRPSYAGVGVEG-LRPGELRPLKTSEV 232 >UniRef50_UPI00016B2405 pseudouridine synthase n=6 Tax=candidate division TM7 RepID=UPI00016B2405 Length = 237 Score = 106 bits (265), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 75/223 (33%), Positives = 116/223 (52%), Gaps = 11/223 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL+KF+A QLGVSR A I +V ++ + + A ++ + + + + + Sbjct: 16 RLNKFLAFQLGVSRRQADNLIAKQKVYINNQPAQLGA-RIGESDTITINNHIVGGRSSYT 74 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y MLNKP YVCS +Y L L GRLD +++GL+L+T+DG ++ R+ Sbjct: 75 YLMLNKPINYVCSRKQQGKTPTIYSLLPDKFHNLKPVGRLDANSSGLLLLTNDGDFAFRM 134 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAK-GVQLHNEKDLTKPAVLEVITPTQVR----L 176 T P+ K Y VTL+ +A + A G+QL++ L+K + Q R + Sbjct: 135 THPKFKKNKQYNVTLDKELAPLHQQMIADFGIQLND--GLSKLGLSR--QSNQDRHNWIV 190 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEY 219 T+SEGR Q++R FAA+G V++LHR G L L G+Y Sbjct: 191 TMSEGRNRQIRRTFAALGYTVIKLHRTHFGTYKL-GTLGAGDY 232 >UniRef50_A5TWE7 Pseudouridine synthase n=10 Tax=Fusobacterium RepID=A5TWE7_FUSNP Length = 234 Score = 106 bits (265), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 74/235 (31%), Positives = 120/235 (51%), Gaps = 15/235 (6%) Query: 1 MRLDKFIAQQLGV-SRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG 59 MR++KF++ LG+ SR + I R+TV+G + ++ DG + Sbjct: 1 MRINKFLST-LGIASRRAIDKYIEEGRITVNGNTA-TTGMDINENDNIFIDGKKIKTSIN 58 Query: 60 PR--YFMLNKP-QGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQ 116 YFMLNKP + S+DD TV+ + ++ GRLD T+GL+L+T+DG+ Sbjct: 59 EEKVYFMLNKPLEVLSSSSDDRGRKTVVDLI--KTDKRIFPIGRLDYMTSGLILLTNDGE 116 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TPT 172 +R+ P+ K Y + + + + ++ KGV L + K L PA + I T Sbjct: 117 LFNRVVHPKSEIYKKYYIKILGELKKEEIDELKKGVLLDDGKTL--PAKISGIKYDKNKT 174 Query: 173 QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 + ++I EGR Q++RM V+ L RE+IG + L DL G+YR LT++E+ Sbjct: 175 SMFISIREGRNRQIRRMIEKFEYKVLMLRREKIGELAL-GDLPEGKYRELTKQEV 228 >UniRef50_C6JI84 Pseudouridine synthase n=2 Tax=Fusobacterium RepID=C6JI84_FUSVA Length = 236 Score = 106 bits (264), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 71/234 (30%), Positives = 127/234 (54%), Gaps = 14/234 (5%) Query: 1 MRLDKFIAQQLGV-SRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG 59 MR++K++A LG+ SR + I + ++GE K+ + ++ G + + Sbjct: 4 MRINKYLAS-LGIASRREVDKMIEEGSIKINGEKA-TPGIKVSDKDEIYIRGKKIEKHTE 61 Query: 60 PR-YFMLNKPQGYVCST-DDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 + Y++LNKP + S+ DD TV+ ++ ++ GRLD +T+GL+++T+DG+ Sbjct: 62 KKVYYILNKPLEVLSSSKDDRGRKTVVDLIN--CKERIFPIGRLDYNTSGLIILTNDGEL 119 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT----PTQ 173 +RI P+ K Y V + + ++ E GV+L + +T PA + ++ T+ Sbjct: 120 FNRIIHPKAEIFKEYYVKVLGEIKENNVELLKNGVELDD--GITLPANVRILRREKGKTE 177 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 + + I EGR QV+RM + + V+ L RE+IG ++L +L GEYR LT +EI Sbjct: 178 LLVAIREGRNRQVRRMMDKINHPVITLRREKIGNLSL-GNLKLGEYRELTNDEI 230 >UniRef50_C8NZC3 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZC3_ERYRH Length = 246 Score = 105 bits (263), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 69/236 (29%), Positives = 124/236 (52%), Gaps = 8/236 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL KFIA SR A I +V V+G V K+ E V +G + + Sbjct: 7 IRLQKFIAMSGYCSRRKAEVLINEGKVKVNGIKVTEQGLKVSTEDRVMVNGILINVEEKK 66 Query: 61 RYFMLNKPQGYVCS-TDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y++LNKP+G V S DD D +V+ + P ++ GRLD +TTG +++T+DG +++ Sbjct: 67 VYYILNKPRGIVSSANDDKDRESVVDLV--PNDIRVFPVGRLDRETTGALILTNDGDFAY 124 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQL----HNEKDLTKPAVLEVITPTQVR 175 +T P+ K Y V++ ++ + +G+ + + ++++ TQ Sbjct: 125 YMTHPKFDLSKIYRVSVRGRLSYEVTNSLKEGITIEGVEYKGVEISRVKYDAAKDKTQFS 184 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 +T+ EG+ Q++++FA G V++LHR +IG + +D +L G+YR L E+ ++ Sbjct: 185 ITLHEGKNRQIRKIFAHFGLPVLKLHRYQIGYLDID-ELKIGQYRELKPFEVKKLL 239 >UniRef50_C7H5G4 Pseudouridine synthase n=8 Tax=Clostridiales RepID=C7H5G4_9FIRM Length = 294 Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 81/238 (34%), Positives = 131/238 (55%), Gaps = 14/238 (5%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAY--DGNPLAQQHG 59 R+ K +A+Q SR A + I RV V+G V+ K+ P DV + D Q++ Sbjct: 22 RIQKIMAEQGLCSRRAAEQIIAEGRVKVNGHPVK-VGDKMDPNRDVLHVDDERIYIQKNQ 80 Query: 60 PRYFM-LNKPQGYVCS-TDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 Y++ L KP+GYV + +D+ TV+ + + + +L+ GRLD D+ GL+LMT+DG + Sbjct: 81 QLYYLALYKPRGYVTTASDELGRKTVMELVSD-IPARLYPVGRLDKDSEGLLLMTNDGAF 139 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTA-EQFAKGVQLHNEKDLTKPAVLEVITP----T 172 + +T P K Y VT++ P AD++ + + GV L ++ T P + V+T T Sbjct: 140 AQAVTHPSGGISKLYRVTVQ-PRADESQILKMSSGVVL-DDGTKTMPCAINVVTDEPGRT 197 Query: 173 QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + +T+ EG+ +++RM AVG VV L R G + L L PG YR LT+ E++ + Sbjct: 198 VMEMTLKEGKNREIRRMCEAVGLEVVRLKRNAEGVVKLGM-LKPGTYRELTKAEVSGL 254 >UniRef50_C6HYA4 Pseudouridine synthase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYA4_9BACT Length = 638 Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 81/232 (34%), Positives = 123/232 (53%), Gaps = 8/232 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAY-DGNPLAQQHG 59 +RL K +A + SR + + I VTVDGE+V ++ P+H V DG PL ++ Sbjct: 26 LRLHKILAHRGVASRRKSEQLIAAGSVTVDGEVVTEPGTRVDPKHQVILVDGRPLPREPE 85 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 F+ KP+G V + DP+ PT+ + P L GRLD T G +L+T++G S Sbjct: 86 TFLFLFYKPKGVVSTLFDPEGRPTLRDYF--PGIDPLLHIGRLDFQTEGALLLTNNGDLS 143 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKG-VQLHNEKDLTKPAVLEVITPTQV--R 175 RI PR +TYLV ++ ++ E+ A+G ++L + V E T T R Sbjct: 144 QRILHPRFEIPRTYLVKIQGGMSPAHLERMARGEIRLDGRPVVPLELVPERQTSTNAWYR 203 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 +T++EGR +V+R+F + V++L R G +TL A L PGEYR +T E Sbjct: 204 ITLTEGRNREVRRLFETLNYFVLKLVRTAFGPLTL-AGLEPGEYRTVTPHET 254 >UniRef50_B8DUD9 Pseudouridine synthase n=8 Tax=Bifidobacterium RepID=B8DUD9_BIFA0 Length = 257 Score = 105 bits (262), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/236 (32%), Positives = 124/236 (52%), Gaps = 9/236 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL K +AQ SR I RV VDGE+V ++ P+ V DG+ + + Sbjct: 19 IRLQKLLAQAGFGSRRKCEEMITDGRVEVDGELVTELGTRVDPKRQQVRVDGSRI--RLN 76 Query: 60 PRY--FMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 PR+ LNKP+ + + DDP L + ++ GRLD D+ GL+LMT+DG+ Sbjct: 77 PRHITLALNKPRKVLSTMDDPKGRYTLRDIVGDKYERIFHMGRLDYDSEGLILMTNDGEL 136 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAK-GVQLHNE-KDLTKPAVLEVIT-PTQV 174 S + P++ EKTY+ TLE ++ + + GVQL + L ++++ T V Sbjct: 137 SQHVMHPKYEVEKTYIATLEGHMSGTVCRRLVRTGVQLDDGWIKLDHCSIIDSNRDQTIV 196 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 ++ + GR V+R+F A+G V L R +IG I L D+ G YR L+++E+ ++ Sbjct: 197 KVVLHSGRNRIVRRIFGAIGFPVKRLVRTQIGPIKL-GDIKSGSYRVLSQDEVRAL 251 >UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=C4ZJR2_THASP Length = 379 Score = 105 bits (261), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 77/241 (31%), Positives = 119/241 (49%), Gaps = 17/241 (7%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGN--PLA-QQH 58 RL K +AQ SR + R++V+G + + K+ P V +G PL Q Sbjct: 118 RLQKVLAQAGVASRREIEEWVVAGRISVNG-LPASLGQKIGPGDRVKVNGKLVPLRFTQR 176 Query: 59 GPRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 PR + +KP+G + S DDP+ PTV L + A GRLD +T+GL+L T+DG Sbjct: 177 SPRVLIYHKPEGEIVSRDDPEGRPTVFERLPILRKGRWLAVGRLDFNTSGLLLFTNDGDL 236 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ---- 173 ++++ PR+ E+ Y V + + ++ + G+QL + PA ++ Sbjct: 237 ANKLMHPRYELEREYAVRILGELTEEQVKSLTDGIQLED-----GPAKFNLLRDEGGEGA 291 Query: 174 ---VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 R+TISEGR +V+RMF AVG V L R R G + L A L G + + E E ++ Sbjct: 292 NHWYRVTISEGRNREVRRMFEAVGLTVSRLMRVRYGSVELPARLKRGMWMEMPEAEACAL 351 Query: 231 V 231 Sbjct: 352 A 352 >UniRef50_C9RK28 Pseudouridine synthase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RK28_FIBSS Length = 243 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 72/240 (30%), Positives = 114/240 (47%), Gaps = 13/240 (5%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGN--PLAQQ 57 MR++K+I+ SR A + RV V+GE + + ++ D V DG L Sbjct: 1 MRINKYISLSGFASRRAADELVADGRVQVNGETISDLGHQVDETKDQVTVDGKLLKLPTN 60 Query: 58 HGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 + M +KP G VC+ DDP +Y P GRLD+ + GL+L TDDG+ Sbjct: 61 KKTKVIMFHKPAGCVCTKDDPQGRRTVYDYLPPGYHNFKYVGRLDLQSRGLLLFTDDGEL 120 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQV--- 174 +R+T P ++Y V P+++ A++ GV + + +D A E+ T V Sbjct: 121 LYRLTHPSFEVPRSYYVWTTRPLSESAAQRLVDGVDIRDPED--PDAQEEIAFATDVYLE 178 Query: 175 ----RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 L + EG+ +++RM A+G + +L R I L DL GE+R LT E+ + Sbjct: 179 NGFAELVLIEGKNREIRRMMRAIGYEIRDLKRVSYCQIQL-GDLPAGEFRELTPNELNKL 237 >UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9GX03_SORC5 Length = 399 Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 77/232 (33%), Positives = 124/232 (53%), Gaps = 11/232 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 RL K IA+ SR + I RV V+G +V K + D + DG L + P Sbjct: 4 RLQKIIARAGVASRRASEELILAGRVRVNGRVVTELGLKADRQKDRIEVDGKRLVSE-AP 62 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y L+KP+ V + DP+ PTV + A +L+ GRLD T+G++LMT+DG +++ Sbjct: 63 VYVALHKPRNVVSTLRDPEGRPTVADHVRGTGA-RLYPVGRLDFATSGILLMTNDGDFAN 121 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT----PTQVR 175 + PR KTY++ ++ ++DD + +G++L E +T PA ++ T + Sbjct: 122 ALLHPRGGVPKTYVLKVQGVMSDDDLTPWREGIRL--EDGVTLPAEARLLRHEGDKTWLE 179 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 +T+ EGR Q++RM A G V+ L R G++ + L PGE+R LT +E+ Sbjct: 180 VTLREGRNQQIRRMGEATGWPVMRLARTTFAGVSSEG-LRPGEWRALTVDEL 230 >UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterineae RepID=A4QE19_CORGB Length = 320 Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 79/238 (33%), Positives = 117/238 (49%), Gaps = 11/238 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVA-YDGNPLAQQHG 59 +RL K +AQ SR A I RV V+ IV ++ P +DV DG + Sbjct: 80 VRLQKVLAQAGVASRRHAEILIDQGRVEVNDRIVTTQGVRVNPNNDVIRVDGVRIHINED 139 Query: 60 PRYFMLNKPQG-YVCSTDDPDHPTVLYFLDEPVA--WKLHAAGRLDIDTTGLVLMTDDGQ 116 YF+LNKP+G + +D+ P V + E A +L GRLD DT GL+L+T+DG+ Sbjct: 140 LEYFVLNKPRGMHSTMSDELGRPCVGDLVSEKTASGQRLFHVGRLDADTEGLLLLTNDGE 199 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ--- 173 ++R+ P++ KTYL T+ + GV+L E K ++I Q Sbjct: 200 LANRLMHPKYEVSKTYLATVRGEATNKLVSALRDGVEL--EDGPAKADFAQIIDVFQGKS 257 Query: 174 -VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +R+ I EGR H V+R+F +G V L R ++ + L D PG R L E+ S+ Sbjct: 258 LLRIEIHEGRKHIVRRLFDELGFPVERLVRTKLHTVQL-GDQKPGSLRALNSSELTSL 314 >UniRef50_O96270 Pseudouridine synthase, putative n=2 Tax=Plasmodium RepID=O96270_PLAF7 Length = 338 Score = 104 bits (259), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 68/285 (23%), Positives = 138/285 (48%), Gaps = 58/285 (20%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDV--AYDG------- 51 +RL+K I+ + +SR + I+ +V ++ +I+ N + D YD Sbjct: 46 IRLNKLISMKRNISRRKSDEFIKDGKVKINNKIITNPGTHVHIGKDSLRIYDKKIKLTNI 105 Query: 52 -NPLAQQHGP--RYFMLNKPQGYVCSTDDPDHPTVLY--FLDEPV-AWKLHAAGRLDIDT 105 N + Q ++ +L+KP+G +C+++D + +Y F +E + ++L GRLD +T Sbjct: 106 INMIKQNENKLHKWIVLHKPKGLLCTSNDEKNRKSIYTLFPEEMLQKYRLVTVGRLDRNT 165 Query: 106 TGLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGV-----------QL 154 +G++L+T+D W +++T P++ +TY V +E PV + ++ A+G+ ++ Sbjct: 166 SGVLLLTNDYAWVNKLTHPKYQRIRTYRVHIEGPVKMNALKELARGIYLEEDEKTQPKKI 225 Query: 155 HNEKD--------------------LTKPAVLEVITPTQVR------------LTISEGR 182 +N K+ T PA +E++ +++ ++I EGR Sbjct: 226 YNYKESREKSNIDDKKKKKMSKMKKKTNPAFIEILREEKIKIKEDTKKITVLNISIKEGR 285 Query: 183 YHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 Q+++MF + V+++ R ITL P +YR L ++E+ Sbjct: 286 NRQIRKMFQQINQPVIKIKRTSFENITLKNIYFPKQYRELNQKEV 330 >UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes RepID=Q11YT0_CYTH3 Length = 562 Score = 103 bits (258), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 73/235 (31%), Positives = 126/235 (53%), Gaps = 10/235 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+K+I+ SR A + I V V+G +V +K+ P V Y+ N + Sbjct: 329 IRLNKYISNSGICSRREADQLIIEGTVKVNGIVVTELGYKVKPGDSVKYN-NKVLNPEKS 387 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ ++ + +D D TV+ + +++ GRLD +TTGL+L T+DG+ + Sbjct: 388 VYVLLNKPKDFITTMEDENDRKTVMQLVANATKERIYPVGRLDRNTTGLLLFTNDGELAQ 447 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGV--QLHNEKDLTKPAVLEVITPTQ--VR 175 ++T P + +K Y V L+ P+ TAE F K V ++H K +I+P++ + Sbjct: 448 KLTHPSNKVKKIYEVELDKPI---TAEDFDKIVDGKIHLFDGPVKVDEAAIISPSKKIIG 504 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + I EGR V+R+F ++G V++L R G+T ++ G +R LT E+ + Sbjct: 505 IEIHEGRNRIVRRIFESLGYDVLKLDRVMYAGLT-KKNIPRGSWRYLTATEVNKI 558 >UniRef50_A8G0B7 Pseudouridine synthase n=19 Tax=Shewanella RepID=A8G0B7_SHESH Length = 261 Score = 103 bits (257), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 71/235 (30%), Positives = 120/235 (51%), Gaps = 13/235 (5%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGE--------IVRNAAFKLLPEHDVAYDGN 52 +RL K++A SR A R IR + ++G + + L+ + + +DG Sbjct: 23 IRLAKYLALTGLCSRRAATRYIRDGLIMIEGRQANHIDTVTLIESPDGLICKELLLFDGM 82 Query: 53 PLAQQHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMT 112 + +Y MLNK G C D ++L+ L P + +L+ GRLD D+ GL+L+T Sbjct: 83 AVEGIEPKQYRMLNKCVGTDCRLLPDDSDSLLHLL--PASPRLYPVGRLDKDSRGLLLLT 140 Query: 113 DDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT 172 +DG+ + + P KTY V ++ P D+ ++ A+GV + L P + ++ Sbjct: 141 NDGELTQHLMHPDFGHTKTYRVRVDRPYGDEFLQKMAQGVSYRDVTTL--PCTMTRLSED 198 Query: 173 QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 Q + +++G Q++RM A+G V++L R +I + L+ DL GE R LT EEI Sbjct: 199 QFEIVLTQGLNRQIRRMSQALGFKVIDLKRVKIQTLMLE-DLNEGEMRELTVEEI 252 >UniRef50_A7HJ21 Pseudouridine synthase n=3 Tax=Thermotogaceae RepID=A7HJ21_FERNB Length = 265 Score = 103 bits (257), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 124/222 (55%), Gaps = 10/222 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 ++L K++ Q G +R A I RV V+G+ V F++ + +V DG L Sbjct: 26 IKLQKYL-QLCGFARRKADEYITSKRVIVNGKTVDEPWFEVNEDDNVLVDGKILKPNQF- 83 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y++L+KP+ YV + DP + L + + L AGRLD D TG++++T+DG+ Sbjct: 84 EYYVLHKPKDYVTTLFDPKQKKTIGELIKHIKTPLKPAGRLDKDATGVLILTNDGELIDI 143 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ----VRL 176 +T+ ++ +K Y+V ++S V+ + + KG+ +++ + K ++I + VR+ Sbjct: 144 LTNAKYRVKKEYIVKVKSVVSAEELVKLKKGI--YDKGEFLKLEHFKIIEKSSEYSIVRV 201 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGE 218 + +G+ H++KR+F+++G++V+EL R G I++ L P E Sbjct: 202 ELIKGKKHEIKRLFSSIGHNVLELKRISHGPISI--SLVPNE 241 >UniRef50_UPI0001C337CA ribosomal large subunit pseudouridine synthase B n=1 Tax=cyanobacterium UCYN-A RepID=UPI0001C337CA Length = 254 Score = 103 bits (257), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 74/239 (30%), Positives = 122/239 (51%), Gaps = 18/239 (7%) Query: 7 IAQQLGV-SRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR---Y 62 I QLG+ SR A I R+ ++G+IV K P HD+ + + H Y Sbjct: 8 ILSQLGIASRRHAEILILEKRLKLNGQIVL-LGDKADPNHDLLELDGKIIKSHKKTQLFY 66 Query: 63 FMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK---LHAAGRLDIDTTGLVLMTDDGQWSH 119 ++NKP G +CS D + +++ L K +H GRLD++++G +L+T+DG + Sbjct: 67 ILVNKPVGIICSCKDSQNRSIVMDLLPSNLRKGMGIHPVGRLDMNSSGALLLTNDGNLTL 126 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP----TQVR 175 R+T PR+H K Y V + + + +GV L +K L PA LEVI T ++ Sbjct: 127 RLTHPRYHLPKIYEVLVRGNFTQAILKDWRQGVVLDGKKTL--PAYLEVINNNRQYTNLK 184 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDA----DLAPGEYRPLTEEEIASV 230 + ++EG+ ++R+ V++LHR IG I+L ++ G YR L+ EI ++ Sbjct: 185 IILTEGKNRHIRRIAQKFELDVIKLHRTAIGPISLSTSKVDNVKLGHYRLLSSSEINTL 243 >UniRef50_D2B9T7 Pseudouridine synthase n=18 Tax=Actinobacteria (class) RepID=D2B9T7_STRRD Length = 621 Score = 103 bits (256), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 78/234 (33%), Positives = 118/234 (50%), Gaps = 6/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAY-DGNPLAQQHG 59 +RL K +AQ SR I RVTVDG++VR ++ P V + DG L Sbjct: 384 VRLQKVLAQAGVASRRACEDMIGDGRVTVDGQVVRRFGARVDPAKQVIHVDGKRLPTMPD 443 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y +NKP G V + DPD P++ F+ + H GRLD +T GL+L+T+DG+ + Sbjct: 444 LVYLAINKPIGVVSTMSDPDGRPSLADFVADRTERLFHV-GRLDTETEGLILLTNDGELA 502 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHN--EKDLTKPAVLEVITPTQVRL 176 +R+T P + +K Y + + D + KG++L + K + V E V + Sbjct: 503 NRLTHPSYGVQKKYWAKVPGRIERDLGRRLKKGIELEDGIAKADSFTLVQEHGQQALVEV 562 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EGR H V+RM VG+ V++L R G + L L PG R LT +E+ + Sbjct: 563 VLHEGRKHIVRRMLEEVGHPVIDLARIEFGPVKL-GRLKPGTVRALTVKEVGEL 615 >UniRef50_A1K3P0 Pseudouridylate synthase n=3 Tax=Betaproteobacteria RepID=A1K3P0_AZOSB Length = 500 Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/241 (34%), Positives = 118/241 (48%), Gaps = 17/241 (7%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL K +A + SR A I V VDG V ++ P+ V Q Sbjct: 262 VRLSKVMADRGICSRREADELIERGWVFVDGRRVSELGTRIDPDARVVLAPEAKKAQAQR 321 Query: 61 RYFMLNKPQGYVCSTDDPDH-PTVLYF-----LDEPVAWKLHA--------AGRLDIDTT 106 +L+KP GYV +P + P V D VA + H AGRLDID+T Sbjct: 322 VTILLHKPVGYVSGQPEPGYEPAVTLIGGDNQFDRDVAQRFHPSQLKGLAPAGRLDIDST 381 Query: 107 GLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL 166 GL+++T DG+ + ++ EK YLV +E + DD G+ L ++K L +PA + Sbjct: 382 GLLVLTQDGRIARQLIGDDSKVEKEYLVRVEGELVDDGLALLNHGLSL-DDKPL-RPAKV 439 Query: 167 EVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 E I Q+R + EGR Q++RM VG VV L R RIG + L DL GE+R L ++E Sbjct: 440 EWINEDQLRFVLKEGRKRQIRRMCELVGLRVVGLKRVRIGRVKL-GDLPLGEWRYLRDDE 498 Query: 227 I 227 + Sbjct: 499 V 499 >UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae RepID=A4BW35_9FLAO Length = 305 Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 66/232 (28%), Positives = 120/232 (51%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+K+IA SR A I V V+G +V +K+ P+ V +DG + + Sbjct: 72 IRLNKYIANSGVCSRREADTYIEHGSVEVNGNLVTEMGYKVQPDDVVRFDGTGITPEQ-K 130 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 +Y +LNKP+ Y+ + DD TV+ + +++ GRLD +TTGL+L T+DG+ + Sbjct: 131 KYILLNKPKNYITTMDDDRGRKTVMDLISNATKERIYPVGRLDRNTTGLLLFTNDGELAK 190 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKP-AVLEVITPTQVRLTI 178 ++T P+H K Y +L+ + E+ V + +K + ++ ++V + I Sbjct: 191 KLTHPKHDVRKLYHASLDKKLELKDLEKLRGEVLIEGKKVFIDAVSYVDGQPKSEVGIEI 250 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+++F +G V +L R +T +L G +R LT +E++++ Sbjct: 251 HSGRNRIVRKIFEHLGYKVSKLDRVIFAELT-KRNLPRGRWRELTNQELSNL 301 >UniRef50_Q0F269 Pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F269_9PROT Length = 289 Score = 102 bits (254), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 68/231 (29%), Positives = 111/231 (48%), Gaps = 7/231 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+++++A SR A R I+ RV+++G+++ + V D + Q G Sbjct: 44 RINRYLAHCGLCSRREADRWIQAGRVSINGQLIEAPGVIVKSGDTVMVDDKLVEPQQGHT 103 Query: 62 YFMLNKPQGYVCST-DDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y + NKP+G +CS D P + F+D VA + + GRLD+DT GL+++TDDG + Sbjct: 104 YILYNKPKGQLCSRLDKKKRPLIYDFID--VAPNVQSIGRLDMDTEGLLMLTDDGALTRA 161 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP----TQVRL 176 +T P + Y + V +T + +G D + + V + T + + Sbjct: 162 LTHPAAKVPREYRARVAGIVELETLAKLRRGGMDIGRGDTSDAWEVTVDSESAGHTWLNI 221 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 I GR+ +V+R G+ V L R R G I LD D+ G +R L EI Sbjct: 222 IILRGRWREVRRTLEECGHPVRRLMRTRFGPIKLDEDMPKGTWRALNRGEI 272 >UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gingivalis ATCC 33277 RepID=B2RK43_PORG3 Length = 439 Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 71/233 (30%), Positives = 127/233 (54%), Gaps = 6/233 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+KF++ SR A I +TV+GE+V ++ + +V Y + + Sbjct: 204 IRLNKFLSNAGVCSRREADLLIEKGEITVNGEVVTELGRRITRQDEVIYK-DKRVEIESK 262 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ V ++DDP+ TV+ + +++ GRLD +TTG++L+T+DG + Sbjct: 263 VYVLLNKPKNCVTTSDDPECRTTVMDIVRYACPERIYPVGRLDRNTTGVLLITNDGDLAS 322 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP--TQVRLT 177 ++T P +K Y V L V+ + ++ A GV+L ++ ++ A+ V +QV + Sbjct: 323 KLTHPSFKKKKIYHVWLNKDVSIEDMQKIADGVEL-DDGEIHADAISYVKEDDLSQVGIE 381 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I GR V+R+F +G VV+L R G+T +L G++R L E+E+ ++ Sbjct: 382 IHSGRNRIVRRLFEHLGYRVVKLDRVYFAGLT-KKNLPRGKWRYLNEQEVNNL 433 >UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MA52_9PORP Length = 472 Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 73/230 (31%), Positives = 118/230 (51%), Gaps = 6/230 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+KF++ SR A + I RV V+G +V ++LP V D P+ + Sbjct: 206 IRLNKFLSNSGLCSRRTADQYIAAGRVKVNGAVVSELGSQVLPTDQVMVDDKPVTLE-AK 264 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ V + DP+ TV+ + +++ GRLD +TTG++L+T+DG + Sbjct: 265 VYVLLNKPKNCVTTLTDPEGRRTVMDLVHNACTERIYPIGRLDRNTTGILLLTNDGDLAV 324 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT--QVRLT 177 R+ P +K Y V L+ V + + A G +L + ++ A+ + T +V + Sbjct: 325 RLMHPAFRKKKIYEVALDKEVTVEHMQMIAHGFELED-GEIHADAISYITGQTHDKVGIE 383 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 I GR V+R+F +G VV L R G+T DL G +R LT EE+ Sbjct: 384 IHSGRNRIVRRIFEHLGYRVVHLDRVYYAGLT-KKDLPRGRWRYLTPEEV 432 >UniRef50_A9KPL1 Pseudouridine synthase n=63 Tax=Bacteria RepID=A9KPL1_CLOPH Length = 477 Score = 102 bits (253), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/230 (28%), Positives = 120/230 (52%), Gaps = 6/230 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +R++K++++ SR A I VT+DGE+ + K+LP V ++++ Sbjct: 19 VRINKYLSESGICSRREADTRIAKGEVTIDGEVAVMGS-KVLPGQKVVLGKKEVSREEKM 77 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 +KP+G VC+T+ + ++ ++ + +++ GRLD D+ GL+ +T++G ++ Sbjct: 78 VLIAFHKPKGIVCTTEKREPDNIIDYI--KYSQRIYPIGRLDKDSEGLIFLTNNGDIVNK 135 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 I +H EK Y+VT+ P+ + A GV + + +TKP LE I R+ +++ Sbjct: 136 ILRAGNHHEKEYIVTVNKPITAAFLKGMAGGVPILD--TVTKPCTLEAIDKVTFRIILTQ 193 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G Q++RM V +L R RI + L L G YR LT++E+ + Sbjct: 194 GLNRQIRRMCEHFDYKVTKLVRIRIMNVNL-GRLKVGGYRNLTDKELEGI 242 >UniRef50_A5ZYR1 Pseudouridine synthase n=2 Tax=Clostridiales RepID=A5ZYR1_9FIRM Length = 315 Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 69/227 (30%), Positives = 116/227 (51%), Gaps = 7/227 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +R++K+++ SR A + RVTV G+ + ++ + +V DG P+ + Sbjct: 13 IRINKYLSAAGVCSRREADQLTDAGRVTVAGKEI-GTGERIPADAEVFLDGRPVKAETRQ 71 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 + KP+G VCST TV FLD PV +++ GRLD D+ GL+L+T+ G + Sbjct: 72 VLLLFYKPRGIVCSTKKQRQETTVTEFLDYPV--RVYPVGRLDKDSEGLLLLTNQGDLVN 129 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 RI ++ EK Y VT++ + + + + GV + +T+P + + ++ Sbjct: 130 RIMRAGNYHEKEYEVTVDKKITETFIRKMSSGVPILG--TVTRPCTVYKTGDKSFSIILT 187 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 +G Q++RM +G HV L R RI +TLD L GEYR + +E Sbjct: 188 QGLNRQIRRMCEYLGYHVCTLKRIRIMNLTLDG-LKCGEYREICGDE 233 >UniRef50_C2KPR0 Pseudouridine synthase n=3 Tax=Mobiluncus RepID=C2KPR0_9ACTO Length = 278 Score = 101 bits (252), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 68/234 (29%), Positives = 115/234 (49%), Gaps = 7/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL K ++Q SR + I+ RV VDGE V K+LP + +G + Sbjct: 42 VRLQKLLSQAGVASRRASEDLIKRGRVQVDGETVTEMGLKVLPSARITVNGQRIHTDAAL 101 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 + + NKP G V + D L + ++ GRLD+ T GL+L+T++G ++R Sbjct: 102 QVWAFNKPVGTVSTMQPEDDRPCLGDWATKLPQRVFHVGRLDVATAGLILLTNNGDLANR 161 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT----PTQVRL 176 + PR+ KTY+ ++ V + +GV+L E +TK +++ + V+L Sbjct: 162 LVHPRYEVPKTYVAMVQGQVKPGLGKVLRRGVEL--EDGVTKVDTFKLVEVRRGSSIVQL 219 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 T+ G+ V+R+ + VG+ V L R IG + L DL G +R LT ++ + Sbjct: 220 TLHSGKNRVVRRLLSEVGHPVSALTRTAIGTLRL-GDLKEGHFRLLTGSDLVKL 272 >UniRef50_Q1IJT7 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJT7_ACIBL Length = 680 Score = 101 bits (251), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 78/255 (30%), Positives = 123/255 (48%), Gaps = 29/255 (11%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL K IA SR A + RVTV+GE+ K PE D+ DG PL + Sbjct: 5 RLQKIIAAAGMASRRKAEELVTAGRVTVNGEVKNELGSKADPETDDIRVDGKPLKAEQLV 64 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +L+KP+GYV + DP+ + L + + +L+ GRLD + GL+L+T+DG+ + + Sbjct: 65 -YVLLHKPKGYVTTVSDPEGRETVMDLVKGIPARLYPVGRLDYLSEGLLLLTNDGEMAAK 123 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKD--------------------- 159 +T H K YLV + ++ ++ GVQL E+ Sbjct: 124 LTHASTHVPKKYLVKVSGEPTEEQIQELRNGVQLPPEQGHIHADPREGGRFGGEKRRSTA 183 Query: 160 -LTKPAVLEVITPTQ---VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLA 215 T P +E+ +T++EGR Q++RMF +G+HV ++ R G + LD + Sbjct: 184 VKTAPCKIELTREGDNPWYEVTLNEGRNRQIRRMFDFIGHHVEKIKRVEYGPLKLDVEN- 242 Query: 216 PGEYRPLTEEEIASV 230 GE+R L E+A + Sbjct: 243 -GEFRLLNPAEVARL 256 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AA45 Ribosomal small subunit pseudouridine synthase A... 351 1e-95 UniRef50_Q8ZGM2 Ribosomal small subunit pseudouridine synthase A... 327 1e-88 UniRef50_Q2NSN0 Pseudouridine synthase n=7 Tax=Gammaproteobacter... 300 2e-80 UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyr... 297 2e-79 UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadale... 294 1e-78 UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae Rep... 287 2e-76 UniRef50_C0FY58 Pseudouridine synthase n=3 Tax=Clostridiales Rep... 287 2e-76 UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales Re... 285 9e-76 UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q2... 285 9e-76 UniRef50_B8G2X0 Pseudouridine synthase n=3 Tax=Bacteria RepID=B8... 285 1e-75 UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3... 285 1e-75 UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gin... 285 1e-75 UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes Rep... 284 2e-75 UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae Re... 284 2e-75 UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter ferme... 284 2e-75 UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroid... 283 2e-75 UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia ... 283 3e-75 UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uen... 282 4e-75 UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B... 282 5e-75 UniRef50_A3HY40 Pseudouridine synthase n=1 Tax=Algoriphagus sp. ... 282 6e-75 UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3... 282 8e-75 UniRef50_B2V6W2 Pseudouridine synthase n=5 Tax=Bacteria RepID=B2... 281 1e-74 UniRef50_A4J3M3 Pseudouridine synthase n=167 Tax=Bacteria RepID=... 281 2e-74 UniRef50_UPI0001693918 pseudouridylate synthase n=1 Tax=Paenibac... 281 2e-74 UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapol... 280 2e-74 UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organism... 280 2e-74 UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes Rep... 279 4e-74 UniRef50_C9KIR7 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 278 1e-73 UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae... 278 1e-73 UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter hepari... 277 1e-73 UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteracea... 277 2e-73 UniRef50_A9KNY1 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 276 3e-73 UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=... 276 5e-73 UniRef50_Q1YVK2 Pseudouridine synthase n=3 Tax=Gammaproteobacter... 276 5e-73 UniRef50_A8SYF2 Pseudouridine synthase n=1 Tax=Coprococcus eutac... 275 7e-73 UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium c... 275 7e-73 UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marin... 274 1e-72 UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B... 274 2e-72 UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=... 274 2e-72 UniRef50_C4Z9Y4 Pseudouridine synthase n=16 Tax=Bacteria RepID=C... 274 2e-72 UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum ter... 273 3e-72 UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 273 4e-72 UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wo... 272 4e-72 UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3... 272 7e-72 UniRef50_A1U6Q2 Pseudouridine synthase n=4 Tax=Gammaproteobacter... 272 8e-72 UniRef50_C8QZD4 Pseudouridine synthase n=1 Tax=Desulfurivibrio a... 272 8e-72 UniRef50_C1F236 Pseudouridine synthase n=8 Tax=Bacteria RepID=C1... 272 9e-72 UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae... 272 9e-72 UniRef50_A0JV58 Pseudouridine synthase n=37 Tax=Actinobacteridae... 271 1e-71 UniRef50_A2RP35 Pseudouridine synthase n=172 Tax=Firmicutes RepI... 271 1e-71 UniRef50_B9MRL6 Pseudouridine synthase n=2 Tax=Clostridia RepID=... 271 2e-71 UniRef50_C6X4T2 Pseudouridine synthase n=2 Tax=Flavobacteriaceae... 271 2e-71 UniRef50_UPI00016C3D27 ribosomal large subunit pseudouridine syn... 270 3e-71 UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 269 4e-71 UniRef50_C8WGQ8 Pseudouridine synthase n=1 Tax=Eggerthella lenta... 269 5e-71 UniRef50_Q21JF0 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 269 7e-71 UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pine... 268 8e-71 UniRef50_Q9I5J6 Ribosomal small subunit pseudouridine synthase A... 268 9e-71 UniRef50_C7GZ55 Pseudouridine synthase n=1 Tax=Eubacterium saphe... 268 1e-70 UniRef50_A9KPL1 Pseudouridine synthase n=63 Tax=Bacteria RepID=A... 268 1e-70 UniRef50_C8PSZ6 Ribosomal large subunit pseudouridine synthase B... 267 1e-70 UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax... 267 2e-70 UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0... 267 2e-70 UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium ... 267 2e-70 UniRef50_C4FUC8 Pseudouridine synthase n=1 Tax=Catonella morbi A... 266 3e-70 UniRef50_A3JEU2 Pseudouridine synthase n=2 Tax=Marinobacter RepI... 266 3e-70 UniRef50_A4J9G8 Pseudouridine synthase n=47 Tax=Bacteria RepID=A... 266 4e-70 UniRef50_B5YJH7 Pseudouridine synthase n=1 Tax=Thermodesulfovibr... 266 4e-70 UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus mari... 266 4e-70 UniRef50_A5V220 Pseudouridine synthase n=5 Tax=Bacteria RepID=A5... 266 5e-70 UniRef50_Q6G8H4 Pseudouridine synthase n=61 Tax=Firmicutes RepID... 265 8e-70 UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae Re... 265 9e-70 UniRef50_Q38VQ0 Pseudouridine synthase n=6 Tax=Lactobacillus Rep... 265 1e-69 UniRef50_D1AL84 Pseudouridine synthase n=1 Tax=Sebaldella termit... 265 1e-69 UniRef50_B4D966 Pseudouridine synthase n=1 Tax=Chthoniobacter fl... 264 1e-69 UniRef50_C2KV26 Pseudouridylate synthase n=1 Tax=Oribacterium si... 264 2e-69 UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales ... 264 2e-69 UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 264 2e-69 UniRef50_D0U645 Pseudouridine synthase n=1 Tax=uncultured actino... 264 2e-69 UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter rube... 263 3e-69 UniRef50_C9L6I1 Pseudouridine synthase n=1 Tax=Blautia hansenii ... 263 3e-69 UniRef50_Q1LLR3 Pseudouridine synthase n=15 Tax=Proteobacteria R... 263 3e-69 UniRef50_C8NZC3 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 263 3e-69 UniRef50_D1PIW4 Pseudouridine synthase n=1 Tax=Subdoligranulum v... 263 4e-69 UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodi... 263 4e-69 UniRef50_UPI0001BCEF2E pseudouridine synthase n=1 Tax=Selenomona... 262 5e-69 UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytop... 262 5e-69 UniRef50_B9KY92 Pseudouridine synthase n=1 Tax=Thermomicrobium r... 262 5e-69 UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1... 262 6e-69 UniRef50_A4SY81 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 262 6e-69 UniRef50_C1ZE67 Pseudouridine synthase n=1 Tax=Planctomyces limn... 262 6e-69 UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 262 6e-69 UniRef50_Q2W4E4 Pseudouridine synthase n=20 Tax=cellular organis... 262 7e-69 UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_14... 262 8e-69 UniRef50_A9ITY6 Pseudouridine synthase n=6 Tax=Betaproteobacteri... 261 1e-68 UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vaden... 261 1e-68 UniRef50_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula m... 261 1e-68 UniRef50_B3DRY9 Pseudouridine synthase n=7 Tax=Bifidobacterium R... 261 1e-68 UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6... 261 1e-68 UniRef50_D1C7P2 Pseudouridine synthase n=1 Tax=Sphaerobacter the... 261 1e-68 UniRef50_Q6SI36 Pseudouridine synthase n=1 Tax=uncultured marine... 261 1e-68 UniRef50_Q2LSY4 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 261 2e-68 UniRef50_A5KLG0 Pseudouridine synthase n=8 Tax=Bacteria RepID=A5... 261 2e-68 UniRef50_C0W3E8 Pseudouridine synthase n=1 Tax=Actinomyces uroge... 261 2e-68 UniRef50_B1XJP9 Pseudouridine synthase n=3 Tax=Chroococcales Rep... 261 2e-68 UniRef50_C5BI29 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 260 2e-68 UniRef50_C4XSY8 Pseudouridine synthase n=11 Tax=Desulfovibrional... 260 3e-68 UniRef50_Q140U9 Pseudouridine synthase n=80 Tax=Proteobacteria R... 260 3e-68 UniRef50_A0L6G3 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 260 4e-68 UniRef50_D2R7V9 Pseudouridine synthase n=1 Tax=Pirellula staleyi... 259 5e-68 UniRef50_Q3IC94 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q3... 259 5e-68 UniRef50_Q47QM5 Pseudouridine synthase n=3 Tax=Actinomycetales R... 259 6e-68 UniRef50_Q042N1 Pseudouridine synthase n=3 Tax=Lactobacillus gas... 259 6e-68 UniRef50_C7H4Z6 Pseudouridine synthase n=1 Tax=Faecalibacterium ... 259 6e-68 UniRef50_C4V2S0 Pseudouridine synthase n=1 Tax=Selenomonas flueg... 259 6e-68 UniRef50_A1K7C2 Pseudouridine synthase n=1 Tax=Azoarcus sp. BH72... 259 7e-68 UniRef50_Q12AB3 Pseudouridine synthase n=8 Tax=Proteobacteria Re... 259 7e-68 UniRef50_D2B9T7 Pseudouridine synthase n=18 Tax=Actinobacteria (... 259 7e-68 UniRef50_A8SLU4 Pseudouridine synthase n=1 Tax=Parvimonas micra ... 259 7e-68 UniRef50_A6EPE0 Pseudouridine synthase n=1 Tax=unidentified euba... 258 1e-67 UniRef50_C8WAL4 Pseudouridine synthase n=7 Tax=Coriobacteriaceae... 258 1e-67 UniRef50_A6DMJ6 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 258 1e-67 UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 258 1e-67 UniRef50_B9XS61 Pseudouridine synthase n=1 Tax=bacterium Ellin51... 258 1e-67 UniRef50_B1KQS3 Pseudouridine synthase n=20 Tax=Gammaproteobacte... 258 1e-67 UniRef50_C8P160 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 258 1e-67 UniRef50_C5EVC9 Pseudouridine synthase n=6 Tax=Clostridiales Rep... 257 1e-67 UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9... 257 2e-67 UniRef50_C9LMF3 Ribosomal small subunit pseudouridine synthase A... 257 2e-67 UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q0... 257 2e-67 UniRef50_D2RB61 Pseudouridylate synthase n=2 Tax=Gardnerella vag... 257 2e-67 UniRef50_B0RHF4 Pseudouridine synthase n=3 Tax=Actinobacteria (c... 257 2e-67 UniRef50_C9RK28 Pseudouridine synthase n=1 Tax=Fibrobacter succi... 257 2e-67 UniRef50_B0VG32 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 257 2e-67 UniRef50_C7I043 Pseudouridine synthase n=4 Tax=Proteobacteria Re... 257 2e-67 UniRef50_UPI0001C37AA4 16s pseudouridylate synthase n=2 Tax=Rumi... 257 2e-67 UniRef50_C5WHE9 Pseudouridine synthase n=3 Tax=Lactobacillales R... 257 3e-67 UniRef50_A6WK95 Pseudouridine synthase n=12 Tax=Gammaproteobacte... 256 4e-67 UniRef50_Q1J642 Pseudouridine synthase n=51 Tax=Streptococcus Re... 256 4e-67 UniRef50_B0S1L0 Pseudouridine synthase n=2 Tax=Finegoldia magna ... 256 6e-67 UniRef50_O32068 Uncharacterized RNA pseudouridine synthase ytzG ... 255 8e-67 UniRef50_C3X1E1 Pseudouridine synthase n=2 Tax=Oxalobacter formi... 255 1e-66 UniRef50_C5CXG1 Pseudouridine synthase n=4 Tax=Comamonadaceae Re... 254 1e-66 UniRef50_A1WE21 Pseudouridine synthase n=1 Tax=Verminephrobacter... 254 1e-66 UniRef50_A1K3P0 Pseudouridylate synthase n=3 Tax=Betaproteobacte... 254 2e-66 UniRef50_B8DUD9 Pseudouridine synthase n=8 Tax=Bifidobacterium R... 254 2e-66 UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1... 254 2e-66 UniRef50_Q1IJT7 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 254 2e-66 UniRef50_B2TQQ1 Pseudouridine synthase n=8 Tax=Clostridium RepID... 254 2e-66 UniRef50_B0MSS4 Pseudouridine synthase n=1 Tax=Alistipes putredi... 254 2e-66 UniRef50_C0QWY7 Pseudouridine synthase n=2 Tax=Brachyspira RepID... 254 2e-66 UniRef50_Q1GFA6 Pseudouridine synthase n=3 Tax=Rhodobacteraceae ... 253 3e-66 UniRef50_C1DA59 Pseudouridine synthase n=6 Tax=Betaproteobacteri... 253 3e-66 UniRef50_Q0F269 Pseudouridine synthase n=1 Tax=Mariprofundus fer... 253 3e-66 UniRef50_Q83IR6 Ribosomal large subunit pseudouridine synthase F... 253 3e-66 UniRef50_A5EVQ2 Pseudouridine synthase n=1 Tax=Dichelobacter nod... 253 3e-66 UniRef50_Q1LJQ9 Pseudouridine synthase n=3 Tax=Burkholderiales R... 253 3e-66 UniRef50_C6HYA4 Pseudouridine synthase n=1 Tax=Leptospirillum fe... 253 4e-66 UniRef50_Q21MN5 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q2... 252 5e-66 UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterinea... 252 6e-66 UniRef50_B1C6T1 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 252 6e-66 UniRef50_C0EB54 Pseudouridine synthase n=1 Tax=Clostridium methy... 252 7e-66 UniRef50_C1XV14 Pseudouridine synthase n=2 Tax=Meiothermus RepID... 252 8e-66 UniRef50_Q49YI4 Pseudouridine synthase n=2 Tax=Staphylococcus Re... 252 8e-66 UniRef50_A0M7H0 Ribosomal large subunit pseudouridine synthase F... 252 9e-66 UniRef50_C7PFL3 Pseudouridine synthase n=3 Tax=Bacteria RepID=C7... 251 1e-65 UniRef50_Q55578 Uncharacterized RNA pseudouridine synthase slr03... 251 1e-65 UniRef50_B6IXC3 Pseudouridine synthase n=2 Tax=Alphaproteobacter... 251 1e-65 UniRef50_Q3J464 Pseudouridine synthase n=15 Tax=Bacteria RepID=Q... 251 1e-65 UniRef50_Q3MC44 Pseudouridine synthase n=21 Tax=Cyanobacteria Re... 251 1e-65 UniRef50_Q7UUP0 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 251 1e-65 UniRef50_B1M661 Pseudouridine synthase n=2 Tax=Alphaproteobacter... 251 1e-65 UniRef50_B0S303 Pseudouridine synthase n=2 Tax=Finegoldia magna ... 251 2e-65 UniRef50_C7NBL1 Pseudouridine synthase n=3 Tax=Leptotrichia RepI... 251 2e-65 UniRef50_C6BUF1 RNA-binding S4 domain protein n=1 Tax=Desulfovib... 251 2e-65 UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium R... 251 2e-65 UniRef50_Q9HZ55 Ribosomal large subunit pseudouridine synthase B... 251 2e-65 UniRef50_B0SBU8 Pseudouridine synthase n=2 Tax=Leptospira biflex... 251 2e-65 UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0... 250 2e-65 UniRef50_Q15Q67 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q1... 250 2e-65 UniRef50_C6XB83 RNA-binding S4 domain protein n=2 Tax=Methylophi... 250 3e-65 UniRef50_Q0G3T3 Pseudouridine synthase n=4 Tax=Alphaproteobacter... 250 4e-65 UniRef50_A6GNL7 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 249 4e-65 UniRef50_C8P302 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 249 4e-65 UniRef50_Q1H048 Pseudouridine synthase n=4 Tax=Betaproteobacteri... 249 6e-65 UniRef50_B2IHU4 Pseudouridine synthase n=1 Tax=Beijerinckia indi... 249 7e-65 UniRef50_C7NDY8 Pseudouridine synthase n=5 Tax=Fusobacteriaceae ... 248 9e-65 UniRef50_C7H5G4 Pseudouridine synthase n=8 Tax=Clostridiales Rep... 248 1e-64 UniRef50_Q5F8V3 Pseudouridine synthase n=21 Tax=Proteobacteria R... 248 1e-64 UniRef50_Q1Q1Q0 Pseudouridine synthase n=1 Tax=Candidatus Kuenen... 248 1e-64 UniRef50_Q8Z1V3 Ribosomal large subunit pseudouridine synthase F... 248 1e-64 UniRef50_C6JI84 Pseudouridine synthase n=2 Tax=Fusobacterium Rep... 247 1e-64 UniRef50_B7L142 Pseudouridine synthase n=9 Tax=Alphaproteobacter... 247 1e-64 UniRef50_A8SIK9 Pseudouridine synthase n=1 Tax=Parvimonas micra ... 247 1e-64 UniRef50_A5TWE7 Pseudouridine synthase n=10 Tax=Fusobacterium Re... 247 2e-64 UniRef50_Q21EB0 Pseudouridine synthase n=14 Tax=Gammaproteobacte... 247 2e-64 UniRef50_B4RM91 Pseudouridine synthase n=8 Tax=Betaproteobacteri... 247 2e-64 UniRef50_B6R892 Pseudouridine synthase n=1 Tax=Pseudovibrio sp. ... 247 2e-64 UniRef50_C0BLA3 Pseudouridine synthase n=1 Tax=Flavobacteria bac... 247 2e-64 UniRef50_Q04F57 Pseudouridine synthase n=2 Tax=Oenococcus oeni R... 247 2e-64 UniRef50_A9NFY3 Pseudouridine synthase n=1 Tax=Acholeplasma laid... 247 2e-64 UniRef50_D0SB72 Pseudouridine synthase n=5 Tax=Acinetobacter Rep... 247 2e-64 UniRef50_A7HC79 Pseudouridine synthase n=1 Tax=Anaeromyxobacter ... 247 2e-64 UniRef50_Q4FVR0 Pseudouridine synthase n=4 Tax=Moraxellaceae Rep... 247 3e-64 UniRef50_A1UU09 Pseudouridine synthase n=4 Tax=Bartonella RepID=... 247 3e-64 UniRef50_Q1J0B9 Pseudouridine synthase n=5 Tax=Deinococci RepID=... 247 3e-64 UniRef50_A0NV51 Pseudouridine synthase n=2 Tax=cellular organism... 246 3e-64 UniRef50_A5ZYR1 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 246 3e-64 UniRef50_Q1MQ05 Pseudouridine synthase n=1 Tax=Lawsonia intracel... 246 4e-64 UniRef50_D2MQD6 Pseudouridylate synthase n=1 Tax=Bulleidia extru... 246 4e-64 UniRef50_C5CED2 Pseudouridine synthase n=1 Tax=Kosmotoga olearia... 246 5e-64 UniRef50_A8U4V7 Pseudouridine synthase n=10 Tax=Lactobacillales ... 246 5e-64 UniRef50_A8U325 Pseudouridine synthase n=1 Tax=alpha proteobacte... 246 5e-64 UniRef50_P45104 Ribosomal large subunit pseudouridine synthase B... 246 6e-64 UniRef50_A9MDW0 Pseudouridine synthase n=43 Tax=Rhizobiales RepI... 246 6e-64 UniRef50_A3JIZ1 Pseudouridine synthase n=1 Tax=Marinobacter sp. ... 246 6e-64 UniRef50_C6VP86 Pseudouridine synthase n=4 Tax=Lactobacillaceae ... 246 7e-64 UniRef50_UPI0001745920 putative pseudouridylate synthase n=1 Tax... 246 7e-64 UniRef50_A7HJ83 RNA-binding S4 domain protein n=3 Tax=Thermotoga... 245 9e-64 UniRef50_Q73PC4 Pseudouridine synthase n=1 Tax=Treponema dentico... 245 1e-63 UniRef50_Q31GA0 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 244 2e-63 UniRef50_UPI0001BC42E2 ribosomal small subunit pseudouridine syn... 244 2e-63 UniRef50_D1R854 Pseudouridine synthase n=4 Tax=Chlamydiales RepI... 244 2e-63 UniRef50_A3UFV9 Pseudouridine synthase n=1 Tax=Oceanicaulis alex... 243 3e-63 UniRef50_Q3AVD5 Pseudouridine synthase n=3 Tax=Cyanobacteria Rep... 243 3e-63 UniRef50_B7VP37 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 243 3e-63 UniRef50_Q01Z61 Pseudouridine synthase n=1 Tax=Candidatus Soliba... 243 3e-63 UniRef50_B9JSE7 Ribosomal large subunit pseudouridine synthase B... 243 3e-63 UniRef50_D0BMY5 Pseudouridine synthase n=1 Tax=Granulicatella el... 243 3e-63 UniRef50_Q8X4Q8 Ribosomal large subunit pseudouridine synthase B... 243 4e-63 UniRef50_Q0VQK2 Pseudouridine synthase n=2 Tax=Alcanivorax RepID... 243 4e-63 UniRef50_C1XNC4 Pseudouridine synthase n=1 Tax=Meiothermus ruber... 243 4e-63 UniRef50_C2KPR0 Pseudouridine synthase n=3 Tax=Mobiluncus RepID=... 242 5e-63 UniRef50_B8KTF1 Pseudouridine synthase n=1 Tax=gamma proteobacte... 242 5e-63 UniRef50_B2HUK5 Pseudouridine synthase n=9 Tax=Gammaproteobacter... 242 5e-63 UniRef50_Q13BM8 Pseudouridine synthase n=55 Tax=Alphaproteobacte... 242 5e-63 UniRef50_B0T1Z8 Pseudouridine synthase n=1 Tax=Caulobacter sp. K... 242 7e-63 UniRef50_D0J8G4 Pseudouridine synthase, Rsu n=96 Tax=Bacteria Re... 242 8e-63 UniRef50_A8I6C3 Pseudouridine synthase n=6 Tax=Alphaproteobacter... 242 9e-63 UniRef50_A6LLC7 RNA-binding S4 domain protein n=1 Tax=Thermosiph... 242 9e-63 UniRef50_Q73PD9 Pseudouridine synthase n=1 Tax=Treponema dentico... 242 1e-62 UniRef50_C8WBY9 Pseudouridine synthase n=3 Tax=Zymomonas mobilis... 242 1e-62 UniRef50_B6W7S5 Pseudouridine synthase n=2 Tax=Anaerococcus RepI... 241 1e-62 UniRef50_A0LG30 Pseudouridine synthase n=1 Tax=Syntrophobacter f... 241 1e-62 UniRef50_B8ETE9 Pseudouridine synthase n=1 Tax=Methylocella silv... 241 1e-62 UniRef50_Q0BE12 Pseudouridine synthase, Rsu n=7 Tax=Burkholderia... 241 1e-62 UniRef50_Q31H34 Pseudouridine synthase n=1 Tax=Thiomicrospira cr... 241 1e-62 UniRef50_Q0AS26 Pseudouridine synthase n=1 Tax=Maricaulis maris ... 241 2e-62 UniRef50_Q5SLZ5 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q5... 241 2e-62 UniRef50_A7VSS7 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 241 2e-62 Sequences not found previously or not previously below threshold: >UniRef50_P0AA45 Ribosomal small subunit pseudouridine synthase A n=156 Tax=Gammaproteobacteria RepID=RSUA_ECO57 Length = 231 Score = 351 bits (901), Expect = 1e-95, Method: Composition-based stats. Identities = 231/231 (100%), Positives = 231/231 (100%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP Sbjct: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR Sbjct: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE Sbjct: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV Sbjct: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 >UniRef50_Q8ZGM2 Ribosomal small subunit pseudouridine synthase A n=134 Tax=Gammaproteobacteria RepID=RSUA_YERPE Length = 235 Score = 327 bits (840), Expect = 1e-88, Method: Composition-based stats. Identities = 189/230 (82%), Positives = 208/230 (90%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF++QQLGVSRA+ RE+R RVT+DGE+V++ A KL PE DV +DGNPL Q GP Sbjct: 1 MRLDKFLSQQLGVSRALVARELRAKRVTIDGEVVKSGAIKLTPEQDVRFDGNPLQQMVGP 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 RYFMLNKPQGYVCST+DPDHPTVLYFLDEPVA+KLHAAGRLDIDTTGLVLMTDDGQWSHR Sbjct: 61 RYFMLNKPQGYVCSTEDPDHPTVLYFLDEPVAYKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +TSPRHHCEKTYLVTLE P++DDTA+QFA GVQL+NEK LTKPA L+VI P +VRLTISE Sbjct: 121 VTSPRHHCEKTYLVTLEHPLSDDTAQQFADGVQLYNEKSLTKPAQLDVIEPQRVRLTISE 180 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GRYHQVKRMFAAVGN V+ELHRERIG ITLD DLAPGEYRPLT EEIASV Sbjct: 181 GRYHQVKRMFAAVGNRVIELHRERIGDITLDDDLAPGEYRPLTTEEIASV 230 >UniRef50_Q2NSN0 Pseudouridine synthase n=7 Tax=Gammaproteobacteria RepID=Q2NSN0_SODGM Length = 235 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 165/228 (72%), Positives = 186/228 (81%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF++QQLGVSRA+ RE+R RVTVDGEI++ AF+L PEH V +DGN L Q Sbjct: 1 MRLDKFLSQQLGVSRALVARELRAKRVTVDGEIIKQGAFQLRPEHQVRFDGNLLHQILTA 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 RYFMLNKPQGYVCSTDDPDHPT+LYF+DEPV KLHAAGRLDIDTTGLVL+TDDGQWS+R Sbjct: 61 RYFMLNKPQGYVCSTDDPDHPTILYFIDEPVPDKLHAAGRLDIDTTGLVLLTDDGQWSYR 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +TSPRHHCEK YLVTLE P+A + QFA G+ L EK T+PA L ++P +VRLTISE Sbjct: 121 LTSPRHHCEKDYLVTLEQPLAAEITAQFAAGILLRGEKLPTRPARLATLSPLKVRLTISE 180 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 GRYHQVKRMFAAVGN VV LHRERIG I LDA L PGEYR LT E+A Sbjct: 181 GRYHQVKRMFAAVGNRVVALHRERIGAIVLDAHLQPGEYRALTAGEVA 228 >UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7ICF2_9CLOT Length = 235 Score = 297 bits (761), Expect = 2e-79, Method: Composition-based stats. Identities = 78/234 (33%), Positives = 126/234 (53%), Gaps = 7/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL K++A SR A I+ RV V+ I+ N + V DG P+ + Sbjct: 4 IRLQKYLAHAGVASRRKAEEMIKQGRVAVNNVIIENMGATVTCNDVVTVDGKPVTTEEAK 63 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y MLNKP GYV ++ D + L + +L+ GRLD DT+GL+L+T+DG +++R Sbjct: 64 VYIMLNKPVGYVSTSKDQFGRPAVIDLVKDAGKRLYPVGRLDYDTSGLILLTNDGDFTYR 123 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT----PTQVRL 176 +T P+H K Y + + +F G+++ + T PA EV+ T VR+ Sbjct: 124 LTHPKHEVNKVYEAVISGFPDKNEITRFETGLKIDD--YQTSPAEFEVLNKKGINTLVRI 181 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 TI EG+ QV++M A+G+ V+ L R +IG I L+ +L G++R L++ E+ + Sbjct: 182 TIHEGKNRQVRKMCEAIGHKVLTLKRIQIGPIALE-NLPEGKWRHLSDNEVKIL 234 >UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadales RepID=B3E7C4_GEOLS Length = 274 Score = 294 bits (755), Expect = 1e-78, Method: Composition-based stats. Identities = 87/232 (37%), Positives = 122/232 (52%), Gaps = 4/232 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 RL K I+ SR A I RVTV+G++V K P D +A DG P+ Sbjct: 4 RLQKIISAAGITSRRAAEEMILAGRVTVNGQVVTELGSKADPAKDLIALDGQPVKPAETF 63 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +L+KP GYV S DP ++ L + V +L GRLD ++ GL+L+T+DG W++R Sbjct: 64 YYVLLHKPAGYVTSLKDPQGRQLVTELVKDVGERLFPVGRLDYNSEGLLLLTNDGAWANR 123 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRLTI 178 + PRH +K Y V + + ++ A GV+L + L + + +TI Sbjct: 124 LMHPRHQVDKEYHVRVRGKIDPQQIKKLADGVELEDGPTGATTVRLLKNDQSNDWLSVTI 183 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EGR QV+RM AAVG VV L R R G +TL L PGEYR L+ EE ++ Sbjct: 184 REGRNRQVRRMCAAVGLFVVRLRRIRYGNLTL-GGLQPGEYRLLSREEAQAL 234 >UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae RepID=Q7MMX9_VIBVY Length = 347 Score = 287 bits (736), Expect = 2e-76, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 125/230 (54%), Gaps = 6/230 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL+K+I++ SR A + I RVT++G+ K+LP DV DG P+A + P Sbjct: 8 RLNKYISETGFCSRREADKLIEQGRVTINGK-QPEMGTKVLPGDDVCVDGKPVAAKEKPV 66 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y LNKP G C+T+ ++ F+ ++ GRLD + GL+ +T+DG ++I Sbjct: 67 YIALNKPTGITCTTERNIPGNIVDFI--GHKKRIFPIGRLDKPSDGLIFLTNDGDIVNKI 124 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEG 181 +H EK Y+V ++ P+ + + + GV + + +T P + T R+ +++G Sbjct: 125 LRAGNHHEKEYVVRVDKPITPEFIKAMSSGVNILD--TVTLPCKVTQETKFSFRIVLTQG 182 Query: 182 RYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 Q++RM A+G V +L R RI I+LD + G++R LT++E+ ++ Sbjct: 183 LNRQIRRMCEALGYEVFKLRRVRIMNISLDG-IPNGKWRYLTDDEVTEIL 231 >UniRef50_C0FY58 Pseudouridine synthase n=3 Tax=Clostridiales RepID=C0FY58_9FIRM Length = 261 Score = 287 bits (735), Expect = 2e-76, Method: Composition-based stats. Identities = 99/234 (42%), Positives = 143/234 (61%), Gaps = 6/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 MRLDKF+ + +R+ + ++ ++TV+GEIV K+ PE+D ++Y G P+ Sbjct: 25 MRLDKFLTEMGLGTRSEVKKILKTKQITVNGEIVTKPETKVAPENDQISYKGEPVTYCE- 83 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y++ KP G V +T+D H TV+ +L + V L GRLDIDT GL+L+T+DG +H Sbjct: 84 YEYYLFYKPAGCVTATEDQLHKTVMDYLTDTVRSDLFPVGRLDIDTEGLLLITNDGALAH 143 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT---PTQVRL 176 + SP H EKTY ++ V + F GV + E+ LTKP L ++ +++ L Sbjct: 144 DLLSPAKHVEKTYYAVIDGVVTEKDVNSFENGVDI-GEEKLTKPGKLRILKSEPESEIEL 202 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 TI+EGR+HQVKRMF AVG V+ L R +G + L DL PGEYRPLTEEEI ++ Sbjct: 203 TITEGRFHQVKRMFEAVGKKVLYLKRISMGPLQLTDDLKPGEYRPLTEEEITAL 256 >UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales RepID=A6LIA0_PARD8 Length = 495 Score = 285 bits (730), Expect = 9e-76, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 123/232 (53%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+KF++ SR A I+ V V+ +V K+ + V ++ P+ Q Sbjct: 260 IRLNKFLSNAGVCSRREADEFIQKGAVKVNDVVVTELGTKITRQDVVTFNEKPV-QIESK 318 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ V ++DDP + TV+ + +++ GRLD +TTG++L+T+DG + Sbjct: 319 VYIVLNKPKNCVTTSDDPQERLTVMDLVKNACQERIYPVGRLDRNTTGVLLLTNDGDLAS 378 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLT-KPAVLEVITPTQVRLTI 178 ++T P +K Y V L+ VA + E+ A G++L + + + +QV + I Sbjct: 379 KLTHPSFKKKKIYHVWLDKNVAIEDMEKIANGLELEDGEIHADAISYASEDDKSQVGIEI 438 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+R+F ++G HV +L R G+T +L G++R L E E+ ++ Sbjct: 439 HSGRNRIVRRIFESLGYHVTKLDRVYFAGLT-KKNLGRGKWRYLNEREVNAL 489 >UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q24V73_DESHY Length = 257 Score = 285 bits (730), Expect = 9e-76, Method: Composition-based stats. Identities = 86/236 (36%), Positives = 128/236 (54%), Gaps = 9/236 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLA-QQHGP 60 RL K +AQ SR A I RV V+GE++R K++ + DG L+ Q+ Sbjct: 17 RLQKVLAQAGIASRRHAEEIILQGRVKVNGEVIRTLGTKVVSTDRIVVDGRLLSIPQNDY 76 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y++L+KP GY+ S DP + L + +++ GRLD DT+GL+L+T+DG +HR Sbjct: 77 AYYLLHKPTGYITSVTDPQGRKTVMELMPKIPRRVYPVGRLDYDTSGLLLLTNDGDLAHR 136 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT------QV 174 + P + EKTY V + + + ++ KGV L + K T PA + ++P Sbjct: 137 LMHPSYGVEKTYRVEVGEKIPEQALKRLEKGVLLEDGK--TAPARIREVSPKGRGSLPTY 194 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +TI EGR QV+RMF AVG + L R R G + LD LAPG +R L++ EI + Sbjct: 195 EITIHEGRNRQVRRMFKAVGFPLSTLKRLRFGPLELDPSLAPGAFRTLSKTEIQHL 250 >UniRef50_B8G2X0 Pseudouridine synthase n=3 Tax=Bacteria RepID=B8G2X0_CHLAD Length = 567 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 86/235 (36%), Positives = 125/235 (53%), Gaps = 11/235 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 RL K +A SR I RVTV+G +V ++ EHD V DG PL Sbjct: 5 RLQKVLASAGIASRRDCEELIAAGRVTVNGRVVTVPGTRVDLEHDEVLVDGQPLRMPAKR 64 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y ML+KP G V + +DP PTV+ +D P ++ GRLD+D+ GL+L+TDDG+ ++ Sbjct: 65 TYIMLHKPAGVVSTAEDPHGRPTVVDLVDVPA--RVFPVGRLDLDSEGLILLTDDGELAY 122 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT----QVR 175 +T P EK Y V L+ + D + GV L E +T PA +E++ T VR Sbjct: 123 ALTHPSFEVEKEYRVLLDRALTPDALRSWRNGVLLEGE--MTAPAWVELLETTPEGVWVR 180 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + + EGR Q++ + +G V L R R G + L DL P +R LT+EE+A++ Sbjct: 181 IVLREGRKRQIRAVAKLLGYEVRRLVRVREGPLQL-GDLPPRAWRHLTDEEVAAL 234 >UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3U4L2_9BACT Length = 420 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 86/235 (36%), Positives = 128/235 (54%), Gaps = 8/235 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +RL K IA SR A I RVT++G +V+ K+ P D V DG L Sbjct: 3 VRLQKLIAGTGLASRRKAEELITSGRVTINGSVVKELGTKVDPARDHVKVDGKHLRAAQP 62 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ + + DDP+ + L V ++ GRLD D+ GL+L+T+ G + Sbjct: 63 YVYLILNKPKNVMSTLDDPEGRPTVKDLLHGVTVRVFPVGRLDFDSEGLMLLTNHGDLAQ 122 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TPTQVR 175 + PR+H KTYL+ ++ + D E +GV+L + T PA ++ + + + + Sbjct: 123 ALLHPRYHVPKTYLIKVKGVLDDAKIEALERGVKLEDG--FTAPAKVKKVSRAESNSWLE 180 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +TI EGR HQVKRM AVG+ V++L R R+G + L DLAP EYR LT+ E + Sbjct: 181 VTIHEGRKHQVKRMVEAVGHSVIKLVRVRMGPLLL-GDLAPREYRFLTDREANRL 234 >UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gingivalis ATCC 33277 RepID=B2RK43_PORG3 Length = 439 Score = 285 bits (730), Expect = 1e-75, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 125/232 (53%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+KF++ SR A I +TV+GE+V ++ + +V Y + + Sbjct: 204 IRLNKFLSNAGVCSRREADLLIEKGEITVNGEVVTELGRRITRQDEVIYKDKRV-EIESK 262 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ V ++DDP+ TV+ + +++ GRLD +TTG++L+T+DG + Sbjct: 263 VYVLLNKPKNCVTTSDDPECRTTVMDIVRYACPERIYPVGRLDRNTTGVLLITNDGDLAS 322 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLT-KPAVLEVITPTQVRLTI 178 ++T P +K Y V L V+ + ++ A GV+L + + + ++ +QV + I Sbjct: 323 KLTHPSFKKKKIYHVWLNKDVSIEDMQKIADGVELDDGEIHADAISYVKEDDLSQVGIEI 382 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+R+F +G VV+L R G+T +L G++R L E+E+ ++ Sbjct: 383 HSGRNRIVRRLFEHLGYRVVKLDRVYFAGLT-KKNLPRGKWRYLNEQEVNNL 433 >UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes RepID=C7M7R0_CAPOD Length = 387 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 123/232 (53%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+K+IA SR A I VTV+GE++ +++ P +V +DG L+ Sbjct: 154 VRLNKYIADAGICSRRNADMYISAGNVTVNGEVMTTLGYRVKPTDEVRFDGKLLSS-EKK 212 Query: 61 RYFMLNKPQGYVCSTDD-PDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+G++ +T+D TV+ + ++ GRLD TTGL+L+T+DG+ + Sbjct: 213 EYILLNKPKGFITTTNDEKGRKTVMDLVANATNVRILPVGRLDRATTGLLLLTNDGELTK 272 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNE-KDLTKPAVLEVITPTQVRLTI 178 ++T P H K Y V L+ + + G++L + ++ + + + ++ + I Sbjct: 273 KLTHPTHGVRKIYHVILDRKLDYKDFMKVQDGLELEDGLIEVDEISYVNDKPKNEIGIKI 332 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+R+F +G V +L R G+T DL G +R LT++E+ ++ Sbjct: 333 HSGRNRIVRRIFEHLGYQVEKLDRVVFAGLT-KKDLPRGHWRRLTQQEVINL 383 >UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae RepID=A5IKF7_THEP1 Length = 239 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 86/230 (37%), Positives = 128/230 (55%), Gaps = 4/230 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLD++++ +R + I+ RVTV+G +V + + V DG + H Sbjct: 1 MRLDRYLSNSGVGTRKEVKKLIKQGRVTVNGRVVLDPGHSVSENDVVVLDGETVNF-HRK 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y + +KP GYV ST DP T++ FL + GRLD D GL+++T DG ++HR Sbjct: 60 VYILFHKPSGYVTSTKDPHSETIMEFLPP--LKGIFPVGRLDKDAEGLLIITSDGDFAHR 117 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 + SP+ EK Y+V +E V +D E+ GV L + K +E ++ +++ I+E Sbjct: 118 VISPKWSVEKEYIVKVEGEVTEDKIEKLKNGVTLRDG-FFAKAKCVEKLSNDTLKIVITE 176 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G+YHQ+KRM AVG V L R RIG + L D+ PGEYR L+EEE+ V Sbjct: 177 GKYHQIKRMTVAVGLRTVHLKRTRIGRLVLPEDMKPGEYRFLSEEEVKKV 226 >UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VXU0_DYAFD Length = 555 Score = 284 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 120/231 (51%), Gaps = 3/231 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+++IA SR A I +++V+G+IV +K+ P V Y G Sbjct: 323 IRLNRYIANAGICSRREADDLISSGQISVNGKIVTEMGYKVRPTDVVKY-GKKALNPEKM 381 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y ++NKP+ Y+ +TDDP+ TVL + + +++ GRLD +TTGL+L+T+DG+ + Sbjct: 382 VYILINKPKDYITTTDDPEERKTVLDIIAGACSERVYPVGRLDRNTTGLLLLTNDGELAE 441 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 ++T P +K Y L+ P+ + EQ GV+L + L V L I Sbjct: 442 KLTHPSSGIKKIYQAELDKPITTEDFEQLKAGVELEDGFIRPDEVGLVTPDAQVVGLEIH 501 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+RMF +G V +L R G+ DL G++R LTE+E+ + Sbjct: 502 SGRNRIVRRMFEHLGYEVQKLDRTVFAGLN-KKDLPRGKWRFLTEKEVIKL 551 >UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroidetes RepID=D2QMI8_9SPHI Length = 638 Score = 283 bits (726), Expect = 2e-75, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 3/230 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL++FIA SR A I ++V+G+IV +K+ V Y G + Sbjct: 406 RLNRFIANSGVCSRREADELIAHGDISVNGKIVTEMGYKVKEGDTVKY-GTKVLNPERFV 464 Query: 62 YFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +LNKP+ Y+ +T+DP+ TV+ + + ++++ GRLD +TTGL+L+T+DG+ + + Sbjct: 465 YVLLNKPKDYITTTEDPEERKTVMELVADAGKFRMYPVGRLDRNTTGLLLITNDGELADK 524 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +T P ++ K Y V L+ P+ D+ E KG++L + + V + I Sbjct: 525 LTHPSNNIRKIYQVELDKPITDEHFEAIKKGIELEDGPIKPDAISIVTPDAYVVGIEIHS 584 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+R+F + G V +L R G+T +L G++R L +E+ + Sbjct: 585 GRNRIVRRIFESFGYEVTKLDRTTYAGLT-KKELPRGKWRFLDPKEVVKL 633 >UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia JCVIHMP010 RepID=D1Y0J0_9BACT Length = 555 Score = 283 bits (726), Expect = 3e-75, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 129/234 (55%), Gaps = 8/234 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+KF+A SR A I +VTV+GE++ K+L +V + ++ Sbjct: 320 LRLNKFLANAGVCSRREADDFILAGQVTVNGEVINELGTKILRTDEVKFQDKLVSL-EKK 378 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ YV ++DDP TV+ + + +++ GRLD +TTG++L T+DG + Sbjct: 379 VYVLLNKPKDYVTTSDDPQQRKTVMDLVKDACPERIYPVGRLDRNTTGVLLFTNDGDLAS 438 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP---TQVRL 176 ++T P+ +K Y V L+ P+ + ++ + G++L + + K +E P QV + Sbjct: 439 KLTHPKFLKKKVYHVFLDKPITANELQKISDGIELEDGE--IKADAIEYANPEDQAQVGI 496 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I G+ V+R+F ++G VV+L R G+T ++ G++R LTE+E+ + Sbjct: 497 EIHSGKNRIVRRIFESLGYRVVKLDRVMFAGLT-KKNVRRGDWRFLTEKEVEML 549 >UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MA52_9PORP Length = 472 Score = 282 bits (724), Expect = 4e-75, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 116/232 (50%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+KF++ SR A + I RV V+G +V ++LP V D P+ Sbjct: 206 IRLNKFLSNSGLCSRRTADQYIAAGRVKVNGAVVSELGSQVLPTDQVMVDDKPVTL-EAK 264 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ V + DP+ TV+ + +++ GRLD +TTG++L+T+DG + Sbjct: 265 VYVLLNKPKNCVTTLTDPEGRRTVMDLVHNACTERIYPIGRLDRNTTGILLLTNDGDLAV 324 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLT-KPAVLEVITPTQVRLTI 178 R+ P +K Y V L+ V + + A G +L + + + + T +V + I Sbjct: 325 RLMHPAFRKKKIYEVALDKEVTVEHMQMIAHGFELEDGEIHADAISYITGQTHDKVGIEI 384 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+R+F +G VV L R G+T DL G +R LT EE+ + Sbjct: 385 HSGRNRIVRRIFEHLGYRVVHLDRVYYAGLT-KKDLPRGRWRYLTPEEVRYL 435 >UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B0TFD8_HELMI Length = 333 Score = 282 bits (724), Expect = 5e-75, Method: Composition-based stats. Identities = 87/235 (37%), Positives = 127/235 (54%), Gaps = 8/235 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDV-AYDGNPLAQQHG 59 +RL K +A SR A IR RV ++G +VR ++ DV DG L ++ Sbjct: 6 VRLQKLLAAHGVASRREAEAMIRAGRVRINGTVVREQGVRVDGARDVIEVDGRILKRREA 65 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 P Y+ L KP+G V + DP + L V +++ GRLD DT GL+L+T+DGQ + Sbjct: 66 PLYYALYKPRGVVTTCKDPQGRQTVIGLLSGVNERVYPVGRLDRDTEGLLLLTNDGQLAF 125 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TPTQVR 175 R+T PR EKTY L V+ + A+GVQL + +T PA + ++ T + Sbjct: 126 RLTHPRFGVEKTYRARLRGDVSAGALKALAEGVQLEDG--VTAPAQVRLLRREGDATWIE 183 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + I EGR Q++RM A+G+ V++L R G ITL L PGE RPLT E+ ++ Sbjct: 184 IKIHEGRKRQIRRMGDAIGHPVIDLERIAFGPITL-GKLKPGEVRPLTSAELRAL 237 >UniRef50_A3HY40 Pseudouridine synthase n=1 Tax=Algoriphagus sp. PR1 RepID=A3HY40_9SPHI Length = 434 Score = 282 bits (723), Expect = 6e-75, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 3/230 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL+K+IA SR A I V+V+G++V K+ V Y G + P Sbjct: 203 RLNKYIANSGICSRREADDLIAKGLVSVNGKVVTELGLKVSKFDRVVYQGKKINP-EKPV 261 Query: 62 YFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +LNKP+ ++ +TDDP + TV+ + ++ GRLD +TTGL+L T+DG+ + + Sbjct: 262 YVLLNKPKDFITTTDDPLERKTVMALVGNACEERIFPVGRLDRNTTGLLLFTNDGELAAK 321 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 ++ P + +K Y VTL+ P+ + + +G+ L + + + + + L I Sbjct: 322 LSHPSNQIKKIYQVTLDKPLTHNDEKDILEGLTLEDGEVEVDDMQVLSVDRKILGLEIHV 381 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G+ V+R+FA +G V L R G+ DL G YR L+E+E+ + Sbjct: 382 GKNRIVRRIFAHLGYEVTALDRVMYAGLD-KKDLKRGNYRFLSEQEVIKL 430 >UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3JBA6_9PORP Length = 459 Score = 282 bits (722), Expect = 8e-75, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 126/232 (54%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+KF+A SR +A + I V+V+GEIV + E ++ DG P+ Sbjct: 224 LRLNKFLASSGVCSRRVADQLIVDGHVSVNGEIVTQLGKHVTREDFISVDGKPV-SIEKK 282 Query: 61 RYFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ V ++ DP+ T + + +++ GRLD +TTGL+L+T+DG + Sbjct: 283 IYVLLNKPRNCVTTSSDPEKRLTAIDLVRNACNERIYPVGRLDRNTTGLLLLTNDGDLAA 342 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLT-KPAVLEVITPTQVRLTI 178 ++ P++ +K Y VTL+ PV+ + +Q A G++L + + + ++ V + I Sbjct: 343 KLMHPKYEKKKIYQVTLDKPVSVEHMQQIASGIELEDGEIHADAISYVDENNLAIVGIEI 402 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+R+F +G V +L R G+T DL G +R LTE+E+ ++ Sbjct: 403 HSGRNRIVRRIFKHLGYRVYKLDRVYFAGLT-KKDLPRGRWRYLTEDEVRNL 453 >UniRef50_B2V6W2 Pseudouridine synthase n=5 Tax=Bacteria RepID=B2V6W2_SULSY Length = 244 Score = 281 bits (720), Expect = 1e-74, Method: Composition-based stats. Identities = 96/237 (40%), Positives = 148/237 (62%), Gaps = 8/237 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 MRLDKF++ Q SR+ + I+ V V+ EIV++ ++ + P + V + + + Sbjct: 1 MRLDKFLSNQGFGSRSQVQKLIKKGFVKVNDEIVKDPSYHIDPMKDKVELEDEEILYKEN 60 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFL-DEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 YFMLNKP GY+ +T+D ++PTVL D P+A KL GRLDIDT GL+++T DGQ+ Sbjct: 61 H-YFMLNKPAGYITATEDEEYPTVLDLFSDLPIASKLFPVGRLDIDTEGLLILTTDGQFG 119 Query: 119 HRITSPRHHCEKTYLVTLESPVAD-DTAEQFAKGVQLHNEKDLTKPAVLEVIT----PTQ 173 HR++ P+ + EK Y +E +++ D +E KG+ L EK TKP ++V+ ++ Sbjct: 120 HRLSHPKWNIEKEYYAIVEGDISNIDFSESENKGIYLKKEKYQTKPFKVKVLNTSKDKSE 179 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + +T++EG+YH VKR+ +G V+ L R RIG + LD DL PGE+R LTE+EI + Sbjct: 180 ILITLTEGKYHIVKRIMQELGYPVLYLKRIRIGNLKLDEDLLPGEFRELTEKEIKDL 236 >UniRef50_A4J3M3 Pseudouridine synthase n=167 Tax=Bacteria RepID=A4J3M3_DESRM Length = 309 Score = 281 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 117/232 (50%), Gaps = 4/232 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 RL K +A+ SR + I +V V+G+ V K+ P D + G PL Sbjct: 4 RLQKILAKAGVASRRHSEELIISGQVKVNGKTVTEMGLKVDPTKDKIEVKGKPLPPLEKK 63 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y ++NKP+GYV + D + L + V +++ GRLD D+ GL+L+T+DG+ + Sbjct: 64 VYLLMNKPRGYVTTLSDERDRKTVVDLLKGVEQRVYPVGRLDYDSEGLLLLTNDGELTQA 123 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ--VRLTI 178 +T P+H +KTYL ++ + + AKG+ L + L + + ++I Sbjct: 124 LTHPKHKVKKTYLAKVDGIPETEELKAMAKGLVLEDGPTAPADVRLAGTGDNRALLEISI 183 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EGR QV+RM +G V+ L R RIG + L L GE R LT++E+ + Sbjct: 184 HEGRNRQVRRMCEHIGYKVLRLRRTRIGTLEL-GSLKSGEVRALTKKELREL 234 >UniRef50_UPI0001693918 pseudouridylate synthase n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693918 Length = 249 Score = 281 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 78/237 (32%), Positives = 125/237 (52%), Gaps = 11/237 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVA-YDGNPLAQQHGP 60 RL K +A SR I RV V+ ++V K+ P DV DG + Q Sbjct: 4 RLQKVLAAAGVASRRKCEEIILAGRVEVNDKVVSTLGVKVNPHQDVIKVDGRAIQNQE-K 62 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y + NKP+G + S DP+ V+ + + +++ GRLD DT GL+++T+DG++++ Sbjct: 63 IYILFNKPKGVITSVSDPEGRRVVGDFLKGIKERVYPVGRLDYDTEGLLILTNDGEFANM 122 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT------PTQV 174 +T PRHH KTY T++ E+ +GV+L + +T PA +E + + Sbjct: 123 VTHPRHHVSKTYHATVKGVPHGSVLEKLREGVKLEDG--MTAPAEVEYHDIDPDKKQSVI 180 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 +TI EG+ QV+RMF AVG V L R + G I L L G++R + +EE+ +++ Sbjct: 181 SITIYEGKNRQVRRMFEAVGYPVTRLKRVKFGSIPLVG-LPRGKFRRMRKEEVQALL 236 >UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9KC52_THENN Length = 240 Score = 280 bits (718), Expect = 2e-74, Method: Composition-based stats. Identities = 91/230 (39%), Positives = 134/230 (58%), Gaps = 4/230 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLD++++ + +R I+ RVTV+ V + A+KL + V DG + Sbjct: 1 MRLDRYLSNRGIGTRKEVRALIKHGRVTVNDRTVLDPAYKLSDKDVVKVDGKVIDLPE-K 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y + KP GYV ST DP T++ FL + + GRLD D GL+L+T+DG+++HR Sbjct: 60 VYILFYKPAGYVTSTRDPHSETIMEFLPD--IKGIFPVGRLDKDAEGLLLVTNDGEFAHR 117 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 + SPR EK Y+V +E + +D E+ +GV L + K +E I+ V++ I+E Sbjct: 118 VISPRWKVEKEYVVKVEGEITEDKLEKLRRGVSLRDG-FFAKAKHVEKISNDTVKIVITE 176 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G+YHQVKRM AAVG + L R RIGG+ L ++ PGEYR L+EEE+ V Sbjct: 177 GKYHQVKRMMAAVGLKTIHLKRVRIGGLRLPQEMKPGEYRFLSEEEVRQV 226 >UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organisms RepID=A4CJ52_9FLAO Length = 303 Score = 280 bits (718), Expect = 2e-74, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 127/232 (54%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+K+IA SR A I VTV+G+ + +K+ P +V +DG L Q+ Sbjct: 70 IRLNKYIANAGICSRREADTYIAAGNVTVNGKTITEMGYKVQPTDEVRFDGRLL-QRERK 128 Query: 61 RYFMLNKPQGYVCSTDD-PDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ ++ +T D TV+ + +L GRLD +TTGL+L T+DG+ + Sbjct: 129 EYVLLNKPRNFITTTRDEKGRRTVMELISRASNARLVPVGRLDRNTTGLLLFTNDGELAK 188 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEK-DLTKPAVLEVITPTQVRLTI 178 ++T P+H K Y V L+ + +G++L + + ++ + + ++ + +V + + Sbjct: 189 KLTHPKHGVRKIYHVELDKTFKSADLGKLREGLELEDGRIEVDEASYIDGASKKEVGVEL 248 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+R+F +G VV+L R + G+T DL G +R LTE+E+ ++ Sbjct: 249 HSGRNRIVRRIFEHLGYQVVKLDRVVLAGLT-KKDLPRGHWRHLTEQEVINL 299 >UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes RepID=Q11YT0_CYTH3 Length = 562 Score = 279 bits (716), Expect = 4e-74, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 120/232 (51%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+K+I+ SR A + I V V+G +V +K+ P V Y+ L + Sbjct: 329 IRLNKYISNSGICSRREADQLIIEGTVKVNGIVVTELGYKVKPGDSVKYNNKVLNPEKS- 387 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ ++ + +D D TV+ + +++ GRLD +TTGL+L T+DG+ + Sbjct: 388 VYVLLNKPKDFITTMEDENDRKTVMQLVANATKERIYPVGRLDRNTTGLLLFTNDGELAQ 447 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKG-VQLHNEKDLTKPAVLEVITPTQVRLTI 178 ++T P + +K Y V L+ P+ + ++ G + L + A + + + + I Sbjct: 448 KLTHPSNKVKKIYEVELDKPITAEDFDKIVDGKIHLFDGPVKVDEAAIISPSKKIIGIEI 507 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EGR V+R+F ++G V++L R G+T ++ G +R LT E+ + Sbjct: 508 HEGRNRIVRRIFESLGYDVLKLDRVMYAGLT-KKNIPRGSWRYLTATEVNKI 558 >UniRef50_C9KIR7 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KIR7_9FIRM Length = 250 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 90/241 (37%), Positives = 132/241 (54%), Gaps = 16/241 (6%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL K I+Q SR A + I RV VDG++VR K+ P H + DG +A + Sbjct: 6 RLQKIISQAGIASRRAAEKMILEGRVRVDGQVVRELGTKVDPAAHTILVDGKKIAGEEQH 65 Query: 61 RYFMLNKPQGYVCST-DDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+GY+ + DD TVL L E V +++ GRLD +T GL+L+T+DG + Sbjct: 66 VYLLLNKPKGYLSTAKDDRGRRTVLDLLPE-VRERVYPVGRLDNNTEGLLLITNDGALMN 124 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP-------- 171 + PR EKTY + + ++ + G+ L + +T PA + ++ Sbjct: 125 GLLHPRFEVEKTYHAGVTGKLTEEKLQMLRDGLLLEDG--MTAPAKVSLLPEREPGERVR 182 Query: 172 --TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 T+ +TI EGR QV+RMFAAVG V L R R G+TL +A G++R LTEEE++S Sbjct: 183 GLTRAAITIHEGRNRQVRRMFAAVGCDVKSLKRVRFAGLTLKG-VARGQHRALTEEEVSS 241 Query: 230 V 230 + Sbjct: 242 L 242 >UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae RepID=A4BW35_9FLAO Length = 305 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 119/232 (51%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+K+IA SR A I V V+G +V +K+ P+ V +DG + + Sbjct: 72 IRLNKYIANSGVCSRREADTYIEHGSVEVNGNLVTEMGYKVQPDDVVRFDGTGITPEQ-K 130 Query: 61 RYFMLNKPQGYVCSTDD-PDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 +Y +LNKP+ Y+ + DD TV+ + +++ GRLD +TTGL+L T+DG+ + Sbjct: 131 KYILLNKPKNYITTMDDDRGRKTVMDLISNATKERIYPVGRLDRNTTGLLLFTNDGELAK 190 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPA-VLEVITPTQVRLTI 178 ++T P+H K Y +L+ + E+ V + +K ++ ++V + I Sbjct: 191 KLTHPKHDVRKLYHASLDKKLELKDLEKLRGEVLIEGKKVFIDAVSYVDGQPKSEVGIEI 250 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+++F +G V +L R +T +L G +R LT +E++++ Sbjct: 251 HSGRNRIVRKIFEHLGYKVSKLDRVIFAELT-KRNLPRGRWRELTNQELSNL 301 >UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y027_PEDHD Length = 472 Score = 277 bits (711), Expect = 1e-73, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 124/233 (53%), Gaps = 5/233 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 +RL+++I+ SR A I V+V+GE+V K+ P + V Y+G L ++ Sbjct: 237 IRLNRYISNSGICSRRKADELIEAGVVSVNGEVVSELGHKIDPVKDQVRYNGELL-KREK 295 Query: 60 PRYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y +LNKP+ Y+ +TDDP + TV+ +++ +++ GRLD +TTGL+LMT+DG + Sbjct: 296 KIYVLLNKPKDYITTTDDPQERRTVMQLVEKASRERIYPVGRLDRNTTGLLLMTNDGDLA 355 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNE-KDLTKPAVLEVITPTQVRLT 177 +++ P++ K Y V L ++ + G++L + + + + +V + Sbjct: 356 DKLSHPKNGITKIYHVELSRSLSQGDLNKIQFGLELEDGIIKPDSVSYVTGGSKREVGIQ 415 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I G+ V+R+F +G VV+L R G +T DL G +R L E E+ + Sbjct: 416 IHSGKNRIVRRIFEHLGYDVVKLDRVVYGNLT-KKDLPRGRWRYLEEHELIQI 467 >UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteraceae RepID=A8ZRV1_DESOH Length = 241 Score = 277 bits (710), Expect = 2e-73, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 122/232 (52%), Gaps = 6/232 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL KF++ SR A I RV V+G++V K+ PE DV +DG+ + Sbjct: 10 IRLQKFLSGAGVCSRRRAEVYIAEGRVAVNGQVVTELGTKVDPESDDVMFDGHRVTLAES 69 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y LNKP GYV S TV+ + V ++ GRLD + GL+LMT DG Sbjct: 70 HVYIALNKPPGYVTSCLQKQETTVMELV--AVDQRVFPVGRLDKPSCGLLLMTSDGGLHQ 127 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 R++ P EK Y V + PV+D + +G+ + K T+PA ++ ++ + + + Sbjct: 128 RLSHPSFDHEKEYDVACDRPVSDADLDAMRRGMVITGRK--TRPAKVKRLSDRRFLIILQ 185 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 EGR Q++RM +GN VV L R RI I L DLA G +R LTEEE +++ Sbjct: 186 EGRNRQIRRMAEMLGNRVVLLRRIRIAHIHL-GDLAEGRWRYLTEEEKKALL 236 >UniRef50_A9KNY1 Pseudouridine synthase n=3 Tax=Firmicutes RepID=A9KNY1_CLOPH Length = 240 Score = 276 bits (708), Expect = 3e-73, Method: Composition-based stats. Identities = 88/230 (38%), Positives = 131/230 (56%), Gaps = 1/230 (0%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RLDK++A +R + IR RV V+G + K+ HD + + Sbjct: 8 LRLDKYLADLSVGTRTEVKQMIRKGRVMVNGNTETSPETKVDSNHDKIFVDSRELSYVTL 67 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 YFMLNKP G V +++D TV+ +DE L GRLD DT GL+++T+DG +H+ Sbjct: 68 EYFMLNKPAGVVSASNDKKQTTVVDLIDEAKRKDLFPVGRLDKDTEGLLIITNDGDLAHQ 127 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 + SP+ H +K Y L P+ + E FA G+++ +E+ PA LE I+ + +TI E Sbjct: 128 LLSPKKHVDKVYFAKLRDPLKKEDEEAFAAGLKI-DEEFTALPAKLERISEQEAYVTIRE 186 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G++HQ+KRMF A N V+ L R +G + LD L+ GEYR LTEEEI ++ Sbjct: 187 GKFHQIKRMFEATRNEVIYLKRISMGSLVLDESLSLGEYRELTEEEIEAL 236 >UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=B2A4P2_NATTJ Length = 238 Score = 276 bits (707), Expect = 5e-73, Method: Composition-based stats. Identities = 83/234 (35%), Positives = 139/234 (59%), Gaps = 9/234 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 MRL KF+++ SR + I+ RVTV+G+++ K+ P+ V DG P+ Q+ Sbjct: 1 MRLQKFMSRAGIASRRKSEELIQQGRVTVNGQVITRLGTKINPDTDTVKVDGEPITQEES 60 Query: 60 PRYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y MLNKP+ Y+ S DDP TV+ + V +++ GRLD D+ GLVL+T+DG+ + Sbjct: 61 NVYIMLNKPKDYITSKDDPQGRKTVMDLIQ--VKERVYPVGRLDYDSRGLVLLTNDGELA 118 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT--PTQVRL 176 +R+ P+++ KTY+V ++ D + G+ L E+ L K +E++ +++ Sbjct: 119 NRLMHPKYNIPKTYMVKVDKLPLQDKLDNLVNGIYL--EEGLCKADHVEILDTKNNILKI 176 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +SEGR Q++RM A++G V +L R+ +G +TL DL+ G YR LT++EI ++ Sbjct: 177 ILSEGRKRQIRRMLASLGIEVKDLKRDSLGTLTL-KDLSEGNYRKLTKDEIDNI 229 >UniRef50_Q1YVK2 Pseudouridine synthase n=3 Tax=Gammaproteobacteria RepID=Q1YVK2_9GAMM Length = 235 Score = 276 bits (707), Expect = 5e-73, Method: Composition-based stats. Identities = 114/231 (49%), Positives = 152/231 (65%), Gaps = 1/231 (0%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RLDK+I+ +SR R I+ VT+D E N A K+ + + +G+ ++ Sbjct: 2 LRLDKYISNATDLSRVEVKRYIKYGDVTIDDEKAINGAQKVSGDETICIEGSAISFAEN- 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 RYFMLNKP G V +T D ++ T L + E + +L AGRLDIDTTGL+L+TDDGQW+HR Sbjct: 61 RYFMLNKPAGVVSATKDSNNSTALDLIFEHRSDELQIAGRLDIDTTGLLLITDDGQWNHR 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +TSPR C+K Y VTL P+ D AE+ A GV L EK PA +E I V L+I+E Sbjct: 121 LTSPRSDCQKIYRVTLGIPITPDYAEKLANGVWLKGEKHPCLPATMEQIDDETVLLSIAE 180 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 G+YHQVKRMFAA+GNHV LHR ++GGI LD L PG+YR LT+ E+AS++ Sbjct: 181 GKYHQVKRMFAALGNHVEALHRTQVGGIILDESLEPGDYRALTDAEVASIM 231 >UniRef50_A8SYF2 Pseudouridine synthase n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SYF2_9FIRM Length = 239 Score = 275 bits (705), Expect = 7e-73, Method: Composition-based stats. Identities = 89/237 (37%), Positives = 134/237 (56%), Gaps = 9/237 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 MRLDKF+ + SR+ + I+ V+V+G ++ K+ + + Y+G L Sbjct: 1 MRLDKFLVEMNIGSRSQVKQYIKKGMVSVNGTNAASSDMKINEDTDTIKYNGKQLCYS-K 59 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 RYF+LNKP G V +T D H TV+ L+ L GRLD+DT GL+++T+DG+ +H Sbjct: 60 YRYFLLNKPAGCVSATKDNVHQTVIDLLNGENTKDLFPVGRLDLDTEGLLIITNDGRLAH 119 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI------TPTQ 173 + SP HH KTY ++ V D T F +G+ + + T PA L++I ++ Sbjct: 120 HLLSPAHHIAKTYYADIDGYVDDQTISLFKQGIDI-GDDTPTLPASLKIIEADRSTGSSR 178 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + LTI+EGR+HQVKRMF AV V L R +G + + DL G YR LT EE++++ Sbjct: 179 IELTITEGRFHQVKRMFQAVNMSVTFLKRISMGNLHIADDLPTGSYRELTPEEVSAL 235 >UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MNA2_CRYCD Length = 296 Score = 275 bits (705), Expect = 7e-73, Method: Composition-based stats. Identities = 81/236 (34%), Positives = 113/236 (47%), Gaps = 9/236 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 +RL KF+A+ SR + R I RV V+G ++ K+ P +V DG + Sbjct: 50 LRLQKFLARAGVASRRGSERLISAGRVAVNGIVITELGTKVDPLVDEVCVDGAIVTWGAP 109 Query: 60 PRYFMLNKPQGYVCSTDD-PDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 LNKP G + + D V + L GRLD DTTGL+L + DG Sbjct: 110 AVTLALNKPAGIITTMKDLRGRRCVADIMPTEQYPGLFPIGRLDQDTTGLLLFSTDGNLG 169 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT----PTQV 174 + + P H K Y T+E + EQ A G+ L + +T PA + V+ + + Sbjct: 170 NALLHPSHGVSKVYRATIEGSIGQAALEQLASGILLDDG--MTAPARVSVVQAGKKHSVI 227 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 L + EGR HQVKRM AVG+ VV+LHR G I L LA G YR L E++ + Sbjct: 228 ELELHEGRKHQVKRMCQAVGHPVVKLHRASFGPIDLAG-LATGAYRRLEGAELSVL 282 >UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZI67_9SPHI Length = 391 Score = 274 bits (703), Expect = 1e-72, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 125/231 (54%), Gaps = 3/231 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL++FI+ SR A + I ++V+G+++ F++ P V Y G L ++ Sbjct: 159 MRLNRFISNSGVCSRREADKLIEMGMISVNGKVITEMGFQVSPTDTVKY-GKRLLKREKF 217 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ ++ +T+DP D TV+ + +++ GRLD +TTGL+L T+DG+ + Sbjct: 218 VYVLLNKPKDFITTTNDPQDRKTVMDLIKNSCDERIYPVGRLDRNTTGLLLFTNDGEVAK 277 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 +++ P H +K Y V L+ P+ D+ + A+GV L + + T V + I Sbjct: 278 KLSHPSHDVKKVYQVELDKPLKDEDLDSIAEGVILEDGYAAVDEIAILNPERTLVGVEIH 337 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+R+F + VV+L R G+ ++ G++R L+E+E+ + Sbjct: 338 IGRNRIVRRIFNHLDYEVVKLDRTMYAGLN-KKNIDRGDWRYLSEKEVIRL 387 >UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B n=200 Tax=Bacteria RepID=RLUB_BACSU Length = 244 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 124/233 (53%), Gaps = 6/233 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K IA SR A I+ +V V+G++V K+ + +G + ++ P Sbjct: 3 RLQKVIAHAGVASRRKAEELIKEGKVKVNGKVVTELGVKVTGSDQIEVNGLKVEREE-PV 61 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 YF+L KP+G + + D V+ + + +++ GRLD DT+GL+L+T+DG++++++ Sbjct: 62 YFLLYKPRGVISAAQDDKGRKVVTDFFKNIPQRIYPIGRLDYDTSGLLLLTNDGEFANKL 121 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ----VRLT 177 P++ +KTY+ ++ + + +G++L K A L + + ++LT Sbjct: 122 MHPKYEIDKTYVAKVKGIPPKELLRKLERGIRLEEGKTAPAKAKLLSLDKKKQTSIIQLT 181 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I EGR QV+RMF A+G+ V++L RE + L L G+ R LT E+ + Sbjct: 182 IHEGRNRQVRRMFEAIGHEVIKLKREEYAFLNLRG-LHTGDARELTPHEVKRL 233 >UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=Q65HX7_BACLD Length = 244 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 78/235 (33%), Positives = 128/235 (54%), Gaps = 10/235 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K IA SR A I+ RVTV+G+ VR K+ + +G L + P Sbjct: 3 RLQKVIAHAGIASRRKAEELIKEGRVTVNGKTVRELGVKVSSSDRIEVNGVQLESEE-PV 61 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 YF+L KP+G + + D V+ V +++ GRLD DT+GL+L+T+DG +++++ Sbjct: 62 YFLLYKPRGVISAVKDDKGRKVVTDFFTEVEERIYPIGRLDYDTSGLLLLTNDGDFANKL 121 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT------PTQVR 175 P++ KTY+ L+ + ++ +GV+L + K T PA +++++ + V+ Sbjct: 122 MHPKYEINKTYVAKLKGIPLKENLKKLERGVRLEDGK--TAPAKVKLLSLDKKKQTSIVQ 179 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +TI EGR QV+RMF A+G+ V++L RE + L L GE R LT E+ + Sbjct: 180 ITIHEGRNRQVRRMFEAIGHEVLKLKREEYAFLNLAG-LKTGEKRELTPHEVKRL 233 >UniRef50_C4Z9Y4 Pseudouridine synthase n=16 Tax=Bacteria RepID=C4Z9Y4_EUBR3 Length = 250 Score = 274 bits (701), Expect = 2e-72, Method: Composition-based stats. Identities = 82/235 (34%), Positives = 134/235 (57%), Gaps = 6/235 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RLDKF+++ +R+ + I+ ++ ++G + K+ + +V+ +G + + Sbjct: 12 IRLDKFLSEMGLGTRSEVKKLIKTGQIAINGTVAAKPETKVDTDADEVSVNGR-IVKYQR 70 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y++ NKP G V +T D H TV+ ++ + V L GRLDIDT GL+L+T+DG SH Sbjct: 71 YEYYLFNKPSGCVSATCDNVHDTVMDYITDAVHDDLFPVGRLDIDTEGLLLITNDGALSH 130 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP---TQVRL 176 + SP H KTY ++ V D +F +G+ + E+ TKPA L + +++ L Sbjct: 131 ELLSPSKHVAKTYYARIDGEVTLDDIIRFKEGIDI-GEEKPTKPAELVIKKSGSVSEIEL 189 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 TI+EG++HQVKRMF A+G V+ L R +G + L DL G YR LT+ E ++ Sbjct: 190 TITEGKFHQVKRMFEALGKRVIYLKRISMGPLKLPDDLKTGTYRALTQAETDMLM 244 >UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFA0_THET1 Length = 253 Score = 273 bits (699), Expect = 3e-72, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 127/233 (54%), Gaps = 6/233 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL K +AQ SR A R I RV+V+G IV PE ++ DG + QQ Sbjct: 5 IRLHKLLAQMGVASRRAAERMIAEGRVSVNGRIVNTPGAMASPEDEIRVDGKLVRQQPKM 64 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 RY +LNKP G + + D TV+ L + +++ GRLD D+ GL+L+T+DG+ + Sbjct: 65 RYILLNKPAGVLSTAKDERGRKTVIDLLGQSN--RVYPVGRLDKDSEGLMLLTNDGELAQ 122 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRLT 177 RIT PR+ K Y+V +E +D + + +GV+L + A + +++ +T Sbjct: 123 RITHPRYGVHKQYMVEVEGYFSDRSLQDLLQGVELEDGFSKPLDAKIISRSRDKSKLLIT 182 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EGR QV+R AA+G V L R +G ++L +L PGEYR L+++E + Sbjct: 183 MGEGRKRQVRRTLAALGYKVKRLTRVALGPLSL-GNLKPGEYRELSDQEAKWL 234 >UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=C8WXC0_ALIAD Length = 273 Score = 273 bits (699), Expect = 4e-72, Method: Composition-based stats. Identities = 86/238 (36%), Positives = 124/238 (52%), Gaps = 14/238 (5%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL K +A SR I RV+VDGEIV K+ P +A DG P+ + P Sbjct: 3 RLQKVLAHAGVASRRKCEELILAGRVSVDGEIVTQLGAKVDPSRQRIAVDGVPIELEQ-P 61 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 +LNKP Y+ + DP TV+ L P+ +++ GRLD DT+GL+L T+DG+ + Sbjct: 62 VVLVLNKPVAYLSTVSDPLGRRTVMQLLP-PIRERVYPVGRLDYDTSGLLLFTNDGELTQ 120 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ------ 173 R+ P EK Y V++ V +T +GV+L + +T PA +EV+ Sbjct: 121 RLLHPSREIEKVYRVSVRGIVDRETRRALMEGVELEDG--VTAPAKVEVLRQADREDGVA 178 Query: 174 -VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 V L I EGR QV+RMF +G V+ L R G ++L L GE+R LT+EE ++ Sbjct: 179 VVHLAIHEGRNRQVRRMFERLGLPVLRLKRIAFGPVSL-GHLKTGEWRALTQEEWVAL 235 >UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX41_SYNWW Length = 239 Score = 272 bits (698), Expect = 4e-72, Method: Composition-based stats. Identities = 79/235 (33%), Positives = 128/235 (54%), Gaps = 8/235 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL K++A+ SR A R I +V V+ + + AF L P V + G + +Q Sbjct: 1 MRLAKYLAESGISSRRQAERLITQGKVKVNDKTITELAFTLKPGDRVEFAGK-IIEQTDK 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +L+KP GY+ S DP + L V ++ GRLD DT GL+L+++DG++S+ Sbjct: 60 IYLLLHKPAGYISSLADPQGRPRVIDLLSAVNTRVFPVGRLDYDTEGLLLLSNDGEFSNL 119 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ----VRL 176 +T PR+ K Y ++ V DT Q +GV L + +T PA + +++ + + L Sbjct: 120 MTHPRYLIPKKYEAWVQGLVKPDTIRQLEQGVALEDG--ITAPARVRLLSSKKGQSLLEL 177 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 I EG+ Q+KRM AVG+ V +L R + +TL+ + G++R LT E+ S++ Sbjct: 178 EIHEGKKRQIKRMCLAVGHRVTKLKRTALAFLTLEG-VPRGQFRFLTASEVESLI 231 >UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3ESK0_9BACT Length = 616 Score = 272 bits (696), Expect = 7e-72, Method: Composition-based stats. Identities = 82/235 (34%), Positives = 122/235 (51%), Gaps = 6/235 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL K +A + SR A IRG V V+G +V K+ PE V DG + + Sbjct: 18 IRLQKLLAHRGLASRRNAEEMIRGGLVKVNGIVVTVPGTKVHPETDRVTVDGKTVPVEPE 77 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 P F+ KP+G V + DPD T L P L GRLDI + G++L+T++G + Sbjct: 78 PFLFLFYKPKGIVSTLHDPDEKTTLKDFF-PQINPLIHVGRLDIQSEGVLLLTNNGDLAQ 136 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKG-VQLHNEKDLTKPAVLEVITPT--QVRL 176 RI PR+ +TYLV ++ V + ++ G V+L E +T T R+ Sbjct: 137 RILHPRYEIPRTYLVKVQGVVKPEHLDRLRSGKVRLDGRPVQPLELEQERLTETNSWYRI 196 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 T++EGR +V+R+F A+ V++L R G + L L PGEYR +T EEIA ++ Sbjct: 197 TLTEGRNREVRRLFDALHYFVLKLTRIAFGNLDLAG-LEPGEYRLVTPEEIALLL 250 >UniRef50_A1U6Q2 Pseudouridine synthase n=4 Tax=Gammaproteobacteria RepID=A1U6Q2_MARAV Length = 231 Score = 272 bits (696), Expect = 8e-72, Method: Composition-based stats. Identities = 109/230 (47%), Positives = 138/230 (60%), Gaps = 1/230 (0%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLD++++ +SR A + + RV VDGE R A ++ E V DG P+ Sbjct: 1 MRLDQYLSNGTELSRKEAKKVVSAGRVKVDGETCRQANRQVEAEQSVHLDGKPVNPPGD- 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y M++KP G + +T D PT L L +A ++H AGRLD DTTGL+L+T DGQWSH Sbjct: 60 IYLMMHKPAGVLSATTDSSQPTALDLLPRGLASRVHIAGRLDKDTTGLLLLTSDGQWSHA 119 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +TSPR C K+Y V L + + KGV L+ E T+PA + V + LTI E Sbjct: 120 VTSPRRECRKSYRVWLAEAIPEQACRALEKGVMLNGETTETRPAEVRVHNNQLIDLTIGE 179 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GRYHQVKRM AAVGN V LHR RIG I LD LAPGE+R LT +EI SV Sbjct: 180 GRYHQVKRMLAAVGNRVEALHRFRIGSIELDDKLAPGEFRALTYQEIRSV 229 >UniRef50_C8QZD4 Pseudouridine synthase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZD4_9DELT Length = 240 Score = 272 bits (696), Expect = 8e-72, Method: Composition-based stats. Identities = 77/234 (32%), Positives = 116/234 (49%), Gaps = 8/234 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL KF+A+ SR A I RV VDG V + PE V +DG P+ Sbjct: 4 RLQKFLARAGIASRRKAEEYIAQGRVQVDGRPVAQMGLTIDPERQQVTFDGQPVLPPSRK 63 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 +LNKP GYV + DP ++ L +L GRLD+DT G +L+T+DG+ + Sbjct: 64 LTVLLNKPAGYVTTMADPQGRPIVTSLINEPGLRLFPVGRLDLDTEGALLLTNDGELAQN 123 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT----PTQVRL 176 I P +TY T++ + +Q +G+ L + T PA + + T + + Sbjct: 124 ILHPSRQINRTYHATVKGRPNREALQQLRRGIMLEGRR--TWPARIRELRRNQESTTLEV 181 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I EGR QV++MFAA+ + V++L R GG+ L L G YR L+ E++ + Sbjct: 182 IIHEGRKRQVRKMFAAINHPVLQLKRVAYGGLRL-GSLPTGRYRRLSPEDLQLL 234 >UniRef50_C1F236 Pseudouridine synthase n=8 Tax=Bacteria RepID=C1F236_ACIC5 Length = 406 Score = 272 bits (696), Expect = 9e-72, Method: Composition-based stats. Identities = 80/241 (33%), Positives = 119/241 (49%), Gaps = 14/241 (5%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHGP 60 RL K +A SR A I RV V+G++V FK + DG L Sbjct: 25 RLQKILASAGVASRRKAEELILAGRVQVNGQVVTEMGFKADAASDHIRVDGKLLQGPEKL 84 Query: 61 RYFMLNKPQGYVCSTDDPDHP-TVLYFL--DEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 RYFMLNKP+GYV + DP+ TV+ F +L+ GRLD + GL+LMT+DG Sbjct: 85 RYFMLNKPKGYVTTVSDPEGRHTVMEFFHGRGKGGERLYPVGRLDYASEGLLLMTNDGAL 144 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLH-----NEKDLTKPAVLEVITPT 172 ++ +T H EK YLV + ++ EQ G+ + + +T PA + ++ Sbjct: 145 ANTLTKASSHVEKVYLVKVSGRPTEEQLEQIRAGIMIDRGRPGEGRVMTAPAGVRMVRDA 204 Query: 173 ---QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 LT+ EGR ++++MF G+ V ++ R G + L D+ PGE R L EE+ S Sbjct: 205 ENPWFELTLIEGRNREIRKMFEETGHFVEKIRRIGYGPLVL--DVEPGEVRELNPEEVDS 262 Query: 230 V 230 + Sbjct: 263 L 263 >UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7I2_9ACTN Length = 285 Score = 272 bits (696), Expect = 9e-72, Method: Composition-based stats. Identities = 78/255 (30%), Positives = 122/255 (47%), Gaps = 27/255 (10%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 MRL +F+A+ SR + + I RV V+G+ VR K++P+ V DG + Sbjct: 25 MRLQRFLARAGVASRRGSEKLISAGRVCVNGKQVRVLGTKVMPQYDHVTVDGKEYVLGND 84 Query: 60 PRYFMLNKPQGYVCSTDDPDH-PTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y +LNKP + + DP P V + L GRLD DTTG++L T +G Sbjct: 85 HVYLLLNKPSQVLTTMSDPFGFPCVASLVPCDDYPGLFPVGRLDSDTTGVLLFTTNGNMG 144 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ----- 173 +R+ P HH KTY+ +E + ++ ++G+ L + +T P + IT + Sbjct: 145 NRLLHPSHHVWKTYVALIEGKLTSSQMQKLSQGIMLEDG--MTSPCFIRTITQDEPCTHL 202 Query: 174 ------------------VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLA 215 L I EGR HQVKRM +G+ V++LHR + G + L+A + Sbjct: 203 DKNHSLFDDMRLNAASSLCELKIHEGRNHQVKRMLQEIGHPVIKLHRFQFGPLCLNAQIP 262 Query: 216 PGEYRPLTEEEIASV 230 G +R T++EI + Sbjct: 263 LGSWRMCTQQEIHDL 277 >UniRef50_A0JV58 Pseudouridine synthase n=37 Tax=Actinobacteridae RepID=A0JV58_ARTS2 Length = 406 Score = 271 bits (694), Expect = 1e-71, Method: Composition-based stats. Identities = 75/235 (31%), Positives = 116/235 (49%), Gaps = 5/235 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVA-YDGNPLAQQHG 59 +RL K +A SR + I RV VDG++V ++ P+ V DG + Sbjct: 168 IRLQKVMASAGVASRRVCEEMISEGRVEVDGKVVTELGVRVDPKTAVIHVDGLRIQLDEN 227 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y + NKP+G V + +DPD P + F+ +L GRLD+ T GL+L+T+DG+ + Sbjct: 228 MVYMVFNKPKGVVSTMEDPDGRPCISDFVRNTHGERLFHVGRLDVATEGLLLLTNDGELA 287 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQV--RL 176 +R+T P + KTYLV + P Q GV+L + L TP V + Sbjct: 288 NRLTHPSYEVPKTYLVQVRGPFPQGIGAQLKAGVELEDGMASVDSFKLVDSTPGHVLIEV 347 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 + G+ V+R+F AVG V+ L R ++G I L D G R L ++E+ ++ Sbjct: 348 VLHSGKNRIVRRLFDAVGFPVLRLVRVKVGPIGL-GDQRQGSIRNLGKQEVGHLL 401 >UniRef50_A2RP35 Pseudouridine synthase n=172 Tax=Firmicutes RepID=A2RP35_LACLM Length = 328 Score = 271 bits (694), Expect = 1e-71, Method: Composition-based stats. Identities = 98/242 (40%), Positives = 140/242 (57%), Gaps = 14/242 (5%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 MRLDKF+A+ SR+ ++ RVTV GEI R+ F++ VA+DG L Q Sbjct: 87 MRLDKFLAESGLGSRSEVKVLLKKGRVTVAGEIQRDGRFQVDKNSRQVAFDGQILDYQE- 145 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWS 118 Y++LNKPQG V +T D TV+ L E K + GRLD +T GL+++T+DG Sbjct: 146 YYYYLLNKPQGVVSATKDNVFKTVVQLLSEKDFRKDIFPVGRLDKNTEGLLILTNDGALG 205 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP------- 171 H +T P+ H EK Y ++ V D+ +FA+G+ L N + +P L V Sbjct: 206 HDLTQPKKHVEKEYFARIDGKVTDEIINKFAEGLTLKNGEK-ARPGELFVEKTYKGDSQS 264 Query: 172 ---TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 +++R+ I EG++HQVKRMF AV +V+ L R R+G + LD+DLA G YRPLT EEI Sbjct: 265 GWVSEIRVIIHEGKFHQVKRMFEAVEMYVLYLKRIRMGNLALDSDLALGAYRPLTIEEIE 324 Query: 229 SV 230 ++ Sbjct: 325 NL 326 >UniRef50_B9MRL6 Pseudouridine synthase n=2 Tax=Clostridia RepID=B9MRL6_ANATD Length = 233 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 99/227 (43%), Positives = 138/227 (60%), Gaps = 2/227 (0%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF+ SR+ + IR VTV+G+ + FK+ PE D+ +A+ Sbjct: 1 MRLDKFLTHCGFGSRSQVKKLIREGIVTVNGKQIVEVDFKINPEEDIIEVDGRVAKFSKQ 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWSH 119 Y M+NKP+GYVCS ++ TV + + + ++ LH GRLD D GL+++TDDG+++H Sbjct: 61 IYIMMNKPKGYVCSNEELASLTVFSLISDDLKYRDLHTVGRLDKDAEGLLIITDDGEYTH 120 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 R+ SP+ EK YLV LE V ++ +F G+ L + T PA +I T V+L I Sbjct: 121 RVISPKKRIEKEYLVRLEKEVDEEKLNEFENGIILDDG-YKTLPAKYTIIDSTTVKLCIY 179 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 EG+YHQVKRMF A+GN VV+L R RIGG+ LD L PGEYR + EE Sbjct: 180 EGKYHQVKRMFEAIGNKVVDLKRLRIGGLNLDQSLKPGEYRVMKVEE 226 >UniRef50_C6X4T2 Pseudouridine synthase n=2 Tax=Flavobacteriaceae RepID=C6X4T2_FLAB3 Length = 371 Score = 271 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 117/232 (50%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+K+IA SR A I V V+G +V +++ V +DG + P Sbjct: 139 IRLNKYIANSGICSRREADELITQGLVQVNGAVVTEMGYQVQKTDKVIFDGQGITP-EKP 197 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+GY+ +T D TV+ + +++ GRLD TTG++L+T+DG + Sbjct: 198 VYVLLNKPKGYISTTKDEKARKTVMDLVANASPYRVFPVGRLDRSTTGVILLTNDGHMTK 257 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQL-HNEKDLTKPAVLEVITPTQVRLTI 178 ++T P + +K Y VTL+ + A+GV+L ++ + +E +V + I Sbjct: 258 KLTHPSFNMKKIYHVTLDRKLDRADLNAIAEGVRLEEGVAEVDSISYIEGKPKNEVGIEI 317 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G V+R+F +G V L R G+T ++ G +R LTE E+ ++ Sbjct: 318 HIGWNRVVRRIFQRLGYEVEALDRVMFAGLT-KKNIKRGHWRILTELEVNNL 368 >UniRef50_UPI00016C3D27 ribosomal large subunit pseudouridine synthase B n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3D27 Length = 271 Score = 270 bits (691), Expect = 3e-71, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 120/233 (51%), Gaps = 7/233 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL+K++A SR + I RV V+G V K+ P H +A D P+ + Sbjct: 3 RLNKYLAHAGVGSRRHCDKLISAGRVKVNGVKVTELGLKIDPSAHQIAVDDQPV-RAEKL 61 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y+ +NKP G++C+ DP P + L V +++ GRLD + GL+LMT+DG + Sbjct: 62 VYWAVNKPVGHLCTNHDPAGRPRAVDLLPH-VEQRVYTVGRLDEGSDGLLLMTNDGDLAQ 120 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAV--LEVITPTQVRLT 177 +T PR+ K Y V + DD ++ GV L + K K A T VR+ Sbjct: 121 GLTHPRYGVPKMYFVLVAGRPTDDDLQKLMDGVWLSDGKVRAKSAKRIKAQGNGTWVRVV 180 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 ++EG+ +++RM A G+ V+ L R IG + LD L G+ R +++EE+ ++ Sbjct: 181 LTEGKNREIRRMLAKFGHKVMRLKRVAIGPVKLDK-LPKGKARRISDEELKAL 232 >UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=A3CPQ5_STRSV Length = 242 Score = 269 bits (690), Expect = 4e-71, Method: Composition-based stats. Identities = 84/237 (35%), Positives = 137/237 (57%), Gaps = 12/237 (5%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++K+IA SR A IR +V+++G++VR A + V +G P+ Sbjct: 1 MRINKYIAHAGIASRRKAEELIRQGKVSINGQVVRELATNVKSGDRVEVEGQPI-YNEEK 59 Query: 61 RYFMLNKPQGYVCS-TDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y++LNKP+G + S +DD TV+ L + V +++ GRLD DT+G++++T+DG ++ Sbjct: 60 VYYLLNKPRGVISSVSDDKGRKTVVELLPQ-VKERIYPVGRLDWDTSGILILTNDGDFTD 118 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI------TPTQ 173 + PR+ +K Y+ ++ + +G+++ K TKPAV E+I + Sbjct: 119 EMIHPRNEIDKVYVARVKGLANKEVLRPLTRGIEIEGRK--TKPAVYEIIKVDPAKNRSV 176 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 V+LTI EGR HQVK+MF AVG V +L R R G + L L PGEYR L+++E++ + Sbjct: 177 VQLTIHEGRNHQVKKMFQAVGLQVDKLSRTRFGHLDLTG-LKPGEYRKLSKKEVSQL 232 >UniRef50_C8WGQ8 Pseudouridine synthase n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGQ8_EGGLE Length = 282 Score = 269 bits (689), Expect = 5e-71, Method: Composition-based stats. Identities = 88/267 (32%), Positives = 126/267 (47%), Gaps = 40/267 (14%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 MRL KF+A+ SR + + RVTV+G++V K+ P +VA DG + G Sbjct: 11 MRLQKFLARAGAASRRGSENLMTAGRVTVNGKVVTELGSKVDPLVDEVAVDGAVVRLADG 70 Query: 60 PRYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 P ML+KP G+V + DP TV + L GRLD DTTGL+L + DG+ Sbjct: 71 PVTIMLHKPAGFVTTMSDPQGRRTVAELVPTERYPGLFPIGRLDFDTTGLLLFSTDGELG 130 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP------- 171 + + P+HH K YL +E + +G++L + T+PA + V+ Sbjct: 131 NGLLHPKHHVTKRYLACVEGRPTERDLALLRRGIELDDGP--TQPADVRVVEGGAARHAE 188 Query: 172 ----------------------------TQVRLTISEGRYHQVKRMFAAVGNHVVELHRE 203 + VRL I EGR QVKRM AAVG+ V+ LHR+ Sbjct: 189 RLLEIPAAVPPRSSKEYAAVCEGRATRRSIVRLGIREGRKRQVKRMLAAVGHPVLALHRD 248 Query: 204 RIGGITLDADLAPGEYRPLTEEEIASV 230 G + L DL G +R L EE+A++ Sbjct: 249 SFGPLEL-GDLPRGAWRALDAEEVAAL 274 >UniRef50_Q21JF0 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q21JF0_SACD2 Length = 242 Score = 269 bits (688), Expect = 7e-71, Method: Composition-based stats. Identities = 112/242 (46%), Positives = 146/242 (60%), Gaps = 13/242 (5%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKFIA SR R I+ V VD +I + +F + + V DG + + P Sbjct: 1 MRLDKFIANNSSYSRTEVKRLIKNKTVCVDKKITTDPSFTVTNLNTVRIDGE-IIEAIKP 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFL------------DEPVAWKLHAAGRLDIDTTGL 108 Y MLNKP GYVC+ D H V+ + + A L AGRLD+DTTGL Sbjct: 60 LYIMLNKPTGYVCANKDNIHSPVVDLITEQHARQSDQTPPKYRAQSLQIAGRLDVDTTGL 119 Query: 109 VLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEV 168 VL+TD+G+W+HR+TSP C K Y V LE P+ D + ++GV LH EK T PA +E+ Sbjct: 120 VLLTDNGEWNHRVTSPNKACFKRYRVKLEKPLDDAAIKLLSEGVMLHGEKAATLPATVEL 179 Query: 169 ITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 I+ T+V L+I EGR+HQVKRMF VG VV+LHRE IG I LD +L PG++R LT EEI Sbjct: 180 ISNTEVLLSIQEGRFHQVKRMFVKVGTCVVKLHREAIGAIELDTNLKPGQWRHLTNEEIE 239 Query: 229 SV 230 ++ Sbjct: 240 AI 241 >UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PP04_CHIPD Length = 516 Score = 268 bits (687), Expect = 8e-71, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 128/234 (54%), Gaps = 5/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 M L+K+IA SR A ++ +VTV+GE++ AFK+ + +VA + + Q Sbjct: 280 MPLNKYIAHSGLCSRRKAVDFVKEGKVTVNGELITEPAFKVTAKDEVAINNRKINIQKNL 339 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAW--KLHAAGRLDIDTTGLVLMTDDGQW 117 Y +LNKP+GY+ +TDDP+ TV+ + + +++ GRLD +T+GL+L+T+DG+ Sbjct: 340 VYILLNKPKGYITTTDDPEGRKTVMELIQDATTEEQRVYPVGRLDRNTSGLLLLTNDGEL 399 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKP-AVLEVITPTQVRL 176 + ++ P+H+ +K Y V L P+ E +GV L + +E TQV + Sbjct: 400 AQKLAHPKHNIKKIYHVGLNKPLTKAHFENILQGVTLEDGVANVDALGYVEAGDKTQVGI 459 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I G+ V+R+F + V +L R G+T ++ G++R LTE+EI + Sbjct: 460 EIHSGKNRIVRRIFEHLEYEVEKLDRVTYAGLT-KKNINRGKWRFLTEKEIILL 512 >UniRef50_Q9I5J6 Ribosomal small subunit pseudouridine synthase A n=25 Tax=Gammaproteobacteria RepID=RSUA_PSEAE Length = 230 Score = 268 bits (687), Expect = 9e-71, Method: Composition-based stats. Identities = 108/230 (46%), Positives = 136/230 (59%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLD+F+A +SR A I G + VDG++VR+ ++ V D L Sbjct: 1 MRLDRFLANLPELSRRDAQMLIAGGHLRVDGQVVRDGTHEVRVFSRVELDERLLQAGKPA 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 RY+ML+KP G V +T DP HPTVL E + LH GRLD +TTGL+L+T+DGQWS R Sbjct: 61 RYYMLHKPMGCVSATRDPQHPTVLDLFPEDLRDDLHIGGRLDYNTTGLMLLTNDGQWSRR 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +T P +K Y V E+P+ + FA G+ E +T PA LE I P RLT+ E Sbjct: 121 LTLPGSRRDKVYYVETEAPIDQRYVDAFAAGLHFRFEDLVTLPAQLEPIGPRCARLTLHE 180 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GRYHQVKRMF N V+ LHRER+G I LD L PG +RPL EEI SV Sbjct: 181 GRYHQVKRMFGHFDNKVLRLHRERMGDICLDPQLPPGAWRPLNAEEICSV 230 >UniRef50_C7GZ55 Pseudouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ55_9FIRM Length = 250 Score = 268 bits (686), Expect = 1e-70, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 127/248 (51%), Gaps = 19/248 (7%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++K+IA+ SR A I+ RVTV G + + + +A DG P+ Q Sbjct: 1 MRINKYIAKCGICSRRKADELIKEGRVTVGGIPLLECGVNVDEDAVIAIDGRPIEIQKKT 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +NKP GYVC+ D +Y L + +L GRLD D+ GL+L+T+DG + + Sbjct: 61 VYIAMNKPCGYVCTVSDELGRRTVYDLLTDIDERLFTIGRLDKDSEGLILLTNDGDLAQK 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNE--------------KDLTKPAVL 166 + SP+ EK Y V + + ++ + G+ + E K TKPA + Sbjct: 121 LLSPKRKIEKNYEVVVRGVPGANDIKKLSGGITIDVEISQTKQNKPVKSIVKYHTKPAKI 180 Query: 167 EVITPTQ----VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPL 222 I Q + + I EG+ Q+++MF +G+ V++L R + GI L DL PGE+R L Sbjct: 181 FEIGQKQGDMKLSMIIKEGKKRQIRKMFDVIGHEVIKLKRVKFAGIEL-GDLRPGEFRHL 239 Query: 223 TEEEIASV 230 +E+E+ S+ Sbjct: 240 SEDEVRSL 247 >UniRef50_A9KPL1 Pseudouridine synthase n=63 Tax=Bacteria RepID=A9KPL1_CLOPH Length = 477 Score = 268 bits (686), Expect = 1e-70, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 119/230 (51%), Gaps = 6/230 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +R++K++++ SR A I VT+DGE+ K+LP V ++++ Sbjct: 19 VRINKYLSESGICSRREADTRIAKGEVTIDGEVAV-MGSKVLPGQKVVLGKKEVSREEKM 77 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 +KP+G VC+T+ + ++ ++ + +++ GRLD D+ GL+ +T++G ++ Sbjct: 78 VLIAFHKPKGIVCTTEKREPDNIIDYI--KYSQRIYPIGRLDKDSEGLIFLTNNGDIVNK 135 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 I +H EK Y+VT+ P+ + A GV + + +TKP LE I R+ +++ Sbjct: 136 ILRAGNHHEKEYIVTVNKPITAAFLKGMAGGVPILD--TVTKPCTLEAIDKVTFRIILTQ 193 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G Q++RM V +L R RI + L L G YR LT++E+ + Sbjct: 194 GLNRQIRRMCEHFDYKVTKLVRIRIMNVNL-GRLKVGGYRNLTDKELEGI 242 >UniRef50_C8PSZ6 Ribosomal large subunit pseudouridine synthase B n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PSZ6_9SPIO Length = 252 Score = 267 bits (685), Expect = 1e-70, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 116/232 (50%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL ++A SR + I RV+V+G +V K+ V +DG P+ + Sbjct: 15 MRLQVYLAHAGVASRRACEKIIEEGRVSVNGTVVTGMGSKVCAGDTVLFDGKPVHPEARK 74 Query: 61 RYFMLNKPQGYVCSTDD-PDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP G+VC+ D PT L E + +L+ GRLD+ ++G +L T+DG ++ Sbjct: 75 CYVLLNKPAGFVCTLSDEKGRPTAADLLKEAYSERLYNIGRLDMFSSGAILFTNDGDFAA 134 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 +I P EK Y++ + +F +G+++ + A + ++R+ + Sbjct: 135 KIEHPSAQIEKEYVIETTQDFPPELLTRFERGIRVDGIFYKCRSAA--AVNRRKLRIVLV 192 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 EG+ +++R+ + + L R RIG + L L GE+R LT +E +++ Sbjct: 193 EGKNREIRRVLDSFNCTIKRLVRVRIGNLEL-GTLKAGEFRDLTVQERQALL 243 >UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BAD7 Length = 247 Score = 267 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 113/233 (48%), Gaps = 6/233 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K IAQ SR A I+ +VTV+GE+V K+ + + +G + + Sbjct: 4 RLQKVIAQSGYTSRRKAEELIQQGKVTVNGEVVTVLGTKVTKKDTICVNGKLINK-EDKV 62 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y++ KP+ VC+ D T + +++ GRLD DTTG + MT+DG++++ I Sbjct: 63 YYLFYKPEKCVCTMSDEHDRTCVADYFADSNERVYPVGRLDYDTTGALFMTNDGEFANLI 122 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL----EVITPTQVRLT 177 P H EK Y V+++ + Q KG+ L K L + E T + + Sbjct: 123 MHPSSHLEKVYEVSVKGLLTKAEKNQLEKGIYLEGVKTLPCEIAITGNDEEHGTTMLLIR 182 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EG+ Q+K+MF VG+ V L R IG I L L PG YR L E+ + Sbjct: 183 LVEGKNRQIKKMFEEVGHPVKRLRRIMIGPIDLKG-LTPGTYRRLKPHEVNVL 234 >UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0N6F1_9FIRM Length = 241 Score = 267 bits (683), Expect = 2e-70, Method: Composition-based stats. Identities = 81/235 (34%), Positives = 124/235 (52%), Gaps = 10/235 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K IA SR A I +V V+G++V K+ + +G PL Sbjct: 3 RLQKAIAASGYTSRRKAEDLIVQGKVEVNGKVVTELGTKVKQGDLITVEGKPLVG-ENKV 61 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y++ KP+G VC+ DD ++ V +++ GRLD DTTGL++M++DG++++ I Sbjct: 62 YYVFYKPKGCVCTLDDEFDRPIITDYFTEVKERIYPVGRLDFDTTGLIIMSNDGEFANMI 121 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP------TQVR 175 PR H EK Y V+++ + T + KGV L K T P ++V+ T ++ Sbjct: 122 MHPRSHLEKIYEVSIKGLITGPTLNKLEKGVYLEGVK--TLPCKIKVVDKDTEHKTTMLK 179 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + + EG+ QVK+MF +VG+ V LHR IGGI L L PG YR L +E+ + Sbjct: 180 IKLVEGKNRQVKKMFESVGHPVKRLHRVSIGGINLKG-LTPGRYRILKPQEVKDL 233 >UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8D3_9FIRM Length = 233 Score = 267 bits (683), Expect = 2e-70, Method: Composition-based stats. Identities = 96/233 (41%), Positives = 138/233 (59%), Gaps = 5/233 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDK++A+ +R+ A + RV V+G + + +L VA DG L Sbjct: 1 MRLDKYLAETAQCTRSEAKTMLAKGRVQVNGAVCKKGDTQLKDTDTVAVDG-ALLTYQKF 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWSH 119 Y MLNKP+G V ++ D TV+ + + + L AGRLD +TG VL+TDDG ++H Sbjct: 60 VYLMLNKPEGVVSASTDKRDTTVVDLVGDAYPRRELFPAGRLDKTSTGFVLLTDDGGFAH 119 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT--QVRLT 177 I SPRHH KTY VT+++P+ + FA GV L + L+ PA + ++P VR+ Sbjct: 120 DILSPRHHVSKTYTVTIDTPLTQEMCTGFAAGVTLADGTALS-PAEVTALSPDGLTVRVV 178 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + +G YHQ+KRMF G V LHRE IGG+ LDA LAPG++R L++EE+A + Sbjct: 179 LRQGVYHQIKRMFGVYGAGVNALHREAIGGLALDAQLAPGQWRELSDEEVAKI 231 >UniRef50_C4FUC8 Pseudouridine synthase n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUC8_9FIRM Length = 243 Score = 266 bits (682), Expect = 3e-70, Method: Composition-based stats. Identities = 84/237 (35%), Positives = 133/237 (56%), Gaps = 9/237 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++K++A SR + + VT++ ++ ++ P D G L Sbjct: 1 MRIEKYLADTGWGSRKDIKQLLAQKIVTINDQVCSKGGTQVTPGSDCVAVGGQLVPYQRY 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAW-KLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y++LNKP+G + +T+D H TV+ +L E L GRLDIDTTGL+L+T++GQ +H Sbjct: 61 HYYLLNKPEGILSATEDRHHQTVIDWLGEGYQHLDLFPVGRLDIDTTGLLLLTNNGQLAH 120 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP------TQ 173 ++ SP+ +KTY T+ V F G L + PA L V++ +Q Sbjct: 121 QLLSPKKKVDKTYTATIRGLVDQADIAAFEAG--LDLGDFTSLPAELTVLSQDVDQGTSQ 178 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +++ I EG++HQVKRMF AVG V+ LHR +G + L++DLA G++R LTE+E ++ Sbjct: 179 IQVIIQEGKFHQVKRMFQAVGKEVLSLHRLAMGPLRLESDLAHGQWRSLTEQEAQAL 235 >UniRef50_A3JEU2 Pseudouridine synthase n=2 Tax=Marinobacter RepID=A3JEU2_9ALTE Length = 250 Score = 266 bits (682), Expect = 3e-70, Method: Composition-based stats. Identities = 101/230 (43%), Positives = 139/230 (60%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 M+L + ++ Q +SR A I +V V+ R A + V+ +G L Q H Sbjct: 16 MKLSRIVSNQPDISRKQANWLIATGQVYVNDLSCRTADADVDEFAAVSVNGKTLQQGHCA 75 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y ML+KP GY+ +T+D HPTVL L ++ LH AGRLD TTGL+++T++G WS + Sbjct: 76 HYIMLHKPAGYLSATEDDTHPTVLQLLPPGLSQCLHIAGRLDRATTGLMILTNNGTWSRQ 135 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +T P K Y VT P+ DT ++FA+G+ E+ T PA LE++ PT RLTI E Sbjct: 136 LTLPGMGIAKVYRVTTAYPIGPDTPQRFAEGIWFEYEQLTTAPATLELLEPTLARLTIYE 195 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GRYHQVKRMF AVGN V+ LHRE+IG + L++DLA G +R LT E + Sbjct: 196 GRYHQVKRMFHAVGNRVIALHREQIGHLQLNSDLAEGNFRMLTGSETEGL 245 >UniRef50_A4J9G8 Pseudouridine synthase n=47 Tax=Bacteria RepID=A4J9G8_DESRM Length = 249 Score = 266 bits (682), Expect = 4e-70, Method: Composition-based stats. Identities = 86/235 (36%), Positives = 135/235 (57%), Gaps = 7/235 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +RLD+ + +R + I+ +V V+GE+ + + P+ D + G + + Sbjct: 7 LRLDRLLNHMGLGTRKEIKKLIKAKQVMVNGELAMDPGLHIFPQRDHIEVQGEVIEYRE- 65 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEP-VAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y MLNKPQ + +T+D V+ LD ++ GRLD DT GL+L+T++G+ + Sbjct: 66 YIYLMLNKPQDVLSATEDASDKVVIDLLDPTYHSFNPFPVGRLDKDTEGLLLLTNNGKLA 125 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP---TQVR 175 H++ SP+ H KTY ++ V ++ FA+GV+L + T P L++I +++ Sbjct: 126 HQLLSPKKHVPKTYYALVQGLVTEEDVAAFARGVELDDG-YRTLPGQLKIIRSAPQSEIE 184 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 LTI EG+YHQVKRMF AVG V+ L R +G + LD +L PGEYR LT+EEIA + Sbjct: 185 LTIYEGKYHQVKRMFEAVGKRVIYLKRLSMGPLVLDNNLKPGEYRELTDEEIALL 239 >UniRef50_B5YJH7 Pseudouridine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJH7_THEYD Length = 237 Score = 266 bits (682), Expect = 4e-70, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 126/232 (54%), Gaps = 5/232 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 RL K ++ SR A I+ RVTV+G+I K PE D + DG L + Sbjct: 4 RLQKILSDYGIASRRHAEELIKEGRVTVNGQIAV-IGQKADPEKDYIKVDGKLLIKPEPK 62 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y+ KP+ + + DP + + + ++++ GRLD D+ GL+L+T+DG+ +++ Sbjct: 63 VYYAFYKPRKVITALLDPQGRPTIRDFIKGIKFRIYPVGRLDFDSEGLLLLTNDGELAYK 122 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRLTI 178 + P EKTY+V ++ V +T E+ KG+++ + + L ++ + +++T+ Sbjct: 123 VMHPSSQIEKTYMVKVDGIVEPETIEKLRKGIKIEGKLAVPVSVHLVKKLKANSWIKITL 182 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EGR Q+++M VG+ V+ L R I G+ L DL PG+ RPLT+EEI + Sbjct: 183 HEGRKRQIRKMLERVGHPVIRLIRIAIDGVKL-GDLKPGQLRPLTKEEIEKL 233 >UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIA1_RHOM4 Length = 268 Score = 266 bits (681), Expect = 4e-70, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 125/234 (53%), Gaps = 6/234 (2%) Query: 1 MRLDKFIAQQLGV-SRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG 59 +RL++++A+ SR A I +V V+G++ ++ P+ V +G + Q Sbjct: 10 IRLNRYLARAGVCPSRRKADELIASGQVRVNGQVA-QLGMRVGPDDIVEVNGVRVVPQTQ 68 Query: 60 PRYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWK--LHAAGRLDIDTTGLVLMTDDGQ 116 Y ++NKP + + DD TVL ++ P K L GRLD +TTG++L+T+DG+ Sbjct: 69 ALYILMNKPHDTITTCDDERGRRTVLDLINLPPEQKNGLFPVGRLDRNTTGVLLLTNDGE 128 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRL 176 ++R+ PR+ EK Y+ PV + AEQ +GVQL + + P ++ L Sbjct: 129 LANRLMHPRYRVEKIYVARTARPVKPEEAEQLRRGVQLEDGPARAVQVAVNPADPHEIAL 188 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I EGR QV+RM A+G+ VV+L R G+T + PG++R LT+ E+ + Sbjct: 189 MIYEGRNRQVRRMLEAIGHEVVQLKRTHYAGLTTKG-VRPGKWRRLTDAEVRRL 241 >UniRef50_A5V220 Pseudouridine synthase n=5 Tax=Bacteria RepID=A5V220_ROSS1 Length = 624 Score = 266 bits (680), Expect = 5e-70, Method: Composition-based stats. Identities = 87/235 (37%), Positives = 127/235 (54%), Gaps = 11/235 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 RL K +A SR I RV V+G++VR ++ PEHD + DG P+ + H Sbjct: 5 RLQKVLASAGIASRRDCEEYIAAGRVMVNGKVVRIPGTRVDPEHDEILVDGRPIGKIHHR 64 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y ML+KP G V +TDDP PTV+ ++ + +L GRLD D+ GL+L+TDDG+ + Sbjct: 65 TYVMLHKPAGVVSTTDDPQGRPTVIDLVN--LEQRLFPVGRLDYDSEGLLLLTDDGELTQ 122 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT----QVR 175 ++T P + EK Y V L + + GV+L K T PA +E+I T VR Sbjct: 123 KLTHPSYQVEKEYRVLLNEAPSPAALRAWRTGVELDGVK--TAPAWVELIERTPDGAWVR 180 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + + EGR Q++ + +G V L R R G +TL DL G +R LT+EE+ + Sbjct: 181 VILHEGRKRQIREVARVLGYEVRRLIRVREGPLTL-GDLPSGTWRFLTDEEVDML 234 >UniRef50_Q6G8H4 Pseudouridine synthase n=61 Tax=Firmicutes RepID=Q6G8H4_STAAS Length = 231 Score = 265 bits (679), Expect = 8e-70, Method: Composition-based stats. Identities = 83/231 (35%), Positives = 130/231 (56%), Gaps = 4/231 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 MR+DKF+A +R + ++ V V+ +++++ + PE+D + G + Sbjct: 1 MRIDKFLANMGVGTRNEVKQLLKKGLVNVNEQVIKSPKTHIEPENDKITVRGELIEYIEN 60 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y MLNKP+ Y+ +T+D TV+ + E + GRLD DT GL+L+T+DG ++H Sbjct: 61 -VYIMLNKPKDYISATEDHHSKTVIDLIPEYQHLNIFTVGRLDKDTEGLLLITNDGDFNH 119 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 + SP H K Y V +P+ +D + F +GV L + K KPA+L I +TI Sbjct: 120 ELMSPNKHVSKKYEVISANPITEDDIQAFKEGVTLSDGK--VKPAILTYIDNQTSHVTIY 177 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EG+YHQVKRMF ++ N V+ L R +I + LD++L GEYR LTE + + Sbjct: 178 EGKYHQVKRMFHSIQNEVLHLRRIKIADLELDSNLDSGEYRLLTENDFDKL 228 >UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae RepID=B3QY10_CHLT3 Length = 297 Score = 265 bits (678), Expect = 9e-70, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 121/233 (51%), Gaps = 6/233 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 +RL+KFIA SR A I V V+G++V +K+ +V +G L + Sbjct: 43 IRLNKFIALCGEASRRKADEMIEQGEVMVNGKVVMELGYKVDRRADEVVVNGKKLHENTQ 102 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y +LNKP+ V ++ D TV+ + + ++ GRLD DTTG++L+T+DG + Sbjct: 103 KIYILLNKPKDVVTTSSDEKSRKTVVELV--GLKDRVFPVGRLDRDTTGVLLLTNDGDLT 160 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP-TQVRLT 177 +R+T P +K Y+ TL+ + + KG +L + + P ++ + + Sbjct: 161 YRLTHPTFGVQKQYVATLDKKITSVDLQNIKKGFRLKDTGEKVSPCNARILDDGYTIWVA 220 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I EG+ HQ+ RMF + G +V +L R GG+ + + GE+R LT+ E++ + Sbjct: 221 IHEGKNHQIHRMFWSFGYNVKKLVRVAYGGLEV-GTMRRGEWRFLTQLEVSKL 272 >UniRef50_Q38VQ0 Pseudouridine synthase n=6 Tax=Lactobacillus RepID=Q38VQ0_LACSS Length = 239 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 84/237 (35%), Positives = 130/237 (54%), Gaps = 11/237 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR+D+F++ +R ++ RV V ++++ A +++ PE V D P+ Q Sbjct: 1 MRIDRFLSHMNVGTRKTLKPLLKAGRVRVADKVIKEAKYQVTPETVVYVDDEPIRYQTN- 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFL-DEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y++LNKP G + +T DP TV+ L GRLD DTTGL+L+T+DG +H Sbjct: 60 FYWLLNKPAGVISATTDPQ-KTVMDLFAPADYREDLFPVGRLDKDTTGLLLITNDGDLAH 118 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI------TPTQ 173 + SP+ H KTY + V QFA G++L + +PA L ++ + Sbjct: 119 DLLSPKKHVAKTYRAKIAGVVTAADQAQFAAGLKLRDFD--AQPAQLTILRTDTARQESL 176 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + + I EG++HQVKRMF AVG V+ L R ++G ++L ADL G+YR LT EI ++ Sbjct: 177 IEVEIHEGKFHQVKRMFHAVGKEVLTLERIKMGPLSLPADLKRGQYRALTTTEIDAL 233 >UniRef50_D1AL84 Pseudouridine synthase n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AL84_SEBTE Length = 233 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 98/232 (42%), Positives = 141/232 (60%), Gaps = 5/232 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 MR+DKF+A +R ++ R++V+ E+V A + ++D VA+DG + + Sbjct: 1 MRIDKFLANSGIGTRKEVKELLKKKRISVNDEVVTEAKTHIDEDNDFVAFDGKRIEFKE- 59 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAW-KLHAAGRLDIDTTGLVLMTDDGQWS 118 Y MLNKPQ + +TDD H TVL L+EP+ L GRLD DT GL+++T+DG+ + Sbjct: 60 FLYIMLNKPQDVISATDDERHRTVLDLLEEPLTKVGLFPVGRLDKDTEGLLVLTNDGKMA 119 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 H + SP+ H K Y V L+ ++ + A GV+L E TKPA +E IT +V + I Sbjct: 120 HELLSPKKHVPKRYYVELKKTLSKEEAAILENGVEL--ETFTTKPAKVEFITEDKVYIII 177 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 SEG+YHQVKRMF VGN V+ L R +G + LD +LAPGEYR LT +E+ + Sbjct: 178 SEGKYHQVKRMFKCVGNRVLFLKRTGMGNLGLDENLAPGEYRELTSDELEQL 229 >UniRef50_B4D966 Pseudouridine synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D966_9BACT Length = 237 Score = 264 bits (677), Expect = 1e-69, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 123/230 (53%), Gaps = 4/230 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL++F+A SR I +V ++G++V + + ++ P V G+ L + Sbjct: 1 MRLNRFLASAGLGSRRGVEELITSGQVRINGQVVTDLSTQVGPTDAVKV-GSRLLRTEQK 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 +LNKP GYVC+ D ++ L +++ GRLD D+ GL+L+T+DG S Sbjct: 60 ITVLLNKPAGYVCTASDERDRKTIFDLLPANWPRVYHVGRLDKDSEGLLLVTNDGDLSLA 119 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +T PR+ EK Y V L+ P E+ KG + + K +E++ PT + LT+++ Sbjct: 120 LTHPRYKIEKEYEVLLDKPFNPQDREKLLKGFHIIGGR--AKAERVEILNPTHLSLTLTQ 177 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G Q++ M +G V L R R+G + + ++ PGE+R LT +EIA++ Sbjct: 178 GIKRQIRLMLYDLGYEVERLARIRLGPLKI-GEMRPGEWRLLTSKEIAAL 226 >UniRef50_C2KV26 Pseudouridylate synthase n=1 Tax=Oribacterium sinus F0268 RepID=C2KV26_9FIRM Length = 239 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 83/237 (35%), Positives = 141/237 (59%), Gaps = 9/237 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEH-DVAYDGNPLAQQHG 59 MRLDK+++ SR++ REIR V ++GEIV++ + ++ P + ++ Y P+ + Sbjct: 1 MRLDKYLSDMGVESRSVLKREIRKGLVKINGEIVKDPSMEVQPGNSEIVYKDEPIHYEE- 59 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y+M+NKP G + ST+D TVL + L GRLD D+ GL+L+ +DG +H Sbjct: 60 FSYYMMNKPVGVLSSTEDRKQKTVLDLFSDKHRKDLFPVGRLDKDSEGLLLIMNDGALAH 119 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ----VR 175 ++ SP+ H EK YLV + ++++ ++ +G+Q ++ + PA ++ T+ V Sbjct: 120 KLLSPKMHIEKKYLVEIPGKISEEELDRLRQGIQ-YDTDLIAMPAKARCLSSTEEGSRVE 178 Query: 176 LTISEGRYHQVKRMFAAV--GNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + I EG++HQ+K+MF A+ V +L R +G + LD LAPGEYR L+EEE+ ++ Sbjct: 179 VIIMEGKFHQIKKMFLALSTDYVVTKLQRLSMGPLHLDPALAPGEYRKLSEEEVQAL 235 >UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales RepID=B4U4Q4_STREM Length = 266 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 82/237 (34%), Positives = 138/237 (58%), Gaps = 12/237 (5%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++K+IA SR A I+ VT++G++V + A + V +G+P+ Sbjct: 27 MRINKYIAHAGVASRRKAEELIKRGLVTLNGQVVTDLATTVKSGDLVEIEGSPI-YNEEK 85 Query: 61 RYFMLNKPQGYVCS-TDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y++LNKP+G + S +DD TV+ L + V +++ GRLD DT+GL+++T+DG ++ Sbjct: 86 VYYLLNKPRGVISSVSDDKGRQTVIDLLPQ-VKERIYPVGRLDWDTSGLLILTNDGDFTD 144 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI------TPTQ 173 ++ PR+ +K YL ++ V ++ +GV + +K TKPA +I + Sbjct: 145 KMIHPRNEIDKVYLARVKGVVTKESLRPLTRGVVIDGKK--TKPARYRIIRVEPDKNRSI 202 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 V LTI EGR+HQVK+MF AVG+ V +L R + G + + L PGE R L+++E++ + Sbjct: 203 VELTIHEGRHHQVKKMFEAVGHLVDKLSRTQFGSLDVRG-LKPGEARRLSKKEVSQL 258 >UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=C4ZJR2_THASP Length = 379 Score = 264 bits (675), Expect = 2e-69, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 114/235 (48%), Gaps = 7/235 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLA---QQH 58 RL K +AQ SR + R++V+G + K+ P V +G + Q Sbjct: 118 RLQKVLAQAGVASRREIEEWVVAGRISVNGLPA-SLGQKIGPGDRVKVNGKLVPLRFTQR 176 Query: 59 GPRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 PR + +KP+G + S DDP+ PTV L + A GRLD +T+GL+L T+DG Sbjct: 177 SPRVLIYHKPEGEIVSRDDPEGRPTVFERLPILRKGRWLAVGRLDFNTSGLLLFTNDGDL 236 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLE--VITPTQVR 175 ++++ PR+ E+ Y V + + ++ + G+QL + E R Sbjct: 237 ANKLMHPRYELEREYAVRILGELTEEQVKSLTDGIQLEDGPAKFNLLRDEGGEGANHWYR 296 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +TISEGR +V+RMF AVG V L R R G + L A L G + + E E ++ Sbjct: 297 VTISEGRNREVRRMFEAVGLTVSRLMRVRYGSVELPARLKRGMWMEMPEAEACAL 351 >UniRef50_D0U645 Pseudouridine synthase n=1 Tax=uncultured actinobacterium RepID=D0U645_9ACTN Length = 237 Score = 264 bits (675), Expect = 2e-69, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 119/231 (51%), Gaps = 4/231 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 MRL+K IA SR A I RV V+G IVR K PE V DG + + Sbjct: 4 MRLNKIIADAGITSRRGADELIEDGRVAVNGIIVREMGSKFDPEMDKVMVDGETITRTLT 63 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y L+KP+G + + DP+ L + +L GRLD D+ GL+L+T+DG + Sbjct: 64 KSYLALHKPKGVLSTMFDPEGRPSLDDFIDLRKERLFHVGRLDKDSEGLILLTNDGDLTF 123 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 R T P EKTY++ + + + KGV+L + + + + ++P + ++I Sbjct: 124 RATHPSFGLEKTYIIEFDGILPTGVDKVLLKGVELEDG--MGRVLTFKQLSPKWIEVSIH 181 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EGRYH ++R+ AVG +V+ L R + G I+L D G +R L + E+ ++ Sbjct: 182 EGRYHIIRRLMEAVGVNVLRLIRTKFGPISL-GDTPEGRWRDLNDGELMNL 231 >UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2G3_SALRD Length = 249 Score = 263 bits (674), Expect = 3e-69, Method: Composition-based stats. Identities = 77/234 (32%), Positives = 119/234 (50%), Gaps = 6/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++K+IA SR A + RV +DGE V + V DG + Sbjct: 11 MRINKYIAHAGVCSRRDADDLVEQGRVHIDGERVDQHGTCVREGQTVTVDGEEV-YPLEF 69 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFL--DEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 Y +LNKP+ + +TDDP D TVL + E L GRLD +TTG++L+++DG Sbjct: 70 EYLLLNKPKDTISTTDDPKDRRTVLDAIGVPEDNPSGLFPVGRLDRNTTGVLLVSNDGDL 129 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLT-KPAVLEVITPTQVRL 176 +HR+ PR+ K Y V ++ V +Q +GV+L + + A L+ T + L Sbjct: 130 AHRLMHPRYEIPKIYYVRVQDDVKPHQLDQLKRGVELSDGAAAADQVAYLDPQRKTDIAL 189 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EGR Q++RM A+G+ +V+L R + +T L GE+R L EE+ + Sbjct: 190 ELHEGRNRQIRRMMEALGHTIVQLERAKYATLT-TGRLQRGEWRRLEPEEVREL 242 >UniRef50_C9L6I1 Pseudouridine synthase n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L6I1_RUMHA Length = 271 Score = 263 bits (674), Expect = 3e-69, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 124/230 (53%), Gaps = 6/230 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL+K+++ SR A R I RV VDG+ ++ ++ DG + ++ Sbjct: 1 MRLNKYLSDAGVCSRREADRLIEEKRVLVDGKPAVQ-GMQVEDFQEIKVDGKAIKREEKK 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 + +KP+G C+ + V+ +++ P+ +++ AGRLD D+ GL+L+T+ G+ ++ Sbjct: 60 VLLVFHKPKGIECTANPNVKKNVISYINYPI--RVYYAGRLDKDSEGLLLLTNQGELVNQ 117 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 I + EK YLVT++ PV ++ + +GV + +T+ +E + R+T+++ Sbjct: 118 IMKAGSYHEKEYLVTVDKPVTEEFLQSMREGVPVLG--TITRKCKVEKESEKVFRITLTQ 175 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G Q++RM +G VV+L R RI I L +L G YR T+EE+ + Sbjct: 176 GLNRQIRRMCNYLGYEVVKLKRIRIMNIEL-GNLPIGSYREATKEELDEL 224 >UniRef50_Q1LLR3 Pseudouridine synthase n=15 Tax=Proteobacteria RepID=Q1LLR3_RALME Length = 631 Score = 263 bits (674), Expect = 3e-69, Method: Composition-based stats. Identities = 66/235 (28%), Positives = 106/235 (45%), Gaps = 7/235 (2%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQ---HG 59 L K +A+ SR I RV+V+G + ++LP V +G + ++ Sbjct: 237 LHKVLAEGGLGSRREMEELILQGRVSVNGLPA-HIGQRILPTDQVRVNGKLIHRKVTTKP 295 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 PR + +KP G + S DP+ PTV L K A GRLD +T GL++ T G + Sbjct: 296 PRVLLYHKPSGEIVSQSDPEGRPTVFDSLPRIKNGKWVAVGRLDFNTEGLLIFTTSGDIA 355 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT--PTQVRL 176 +R PR+ E+ Y V +A+ ++ G+QL + + + Sbjct: 356 NRFMHPRYGVEREYAVRTLGELAEADRQRLLHGIQLDDGEANFLRIADGGGEGVNQWYHV 415 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 ++EGR +V+RMF AVG V L R R G L L G ++ L ++ ++ Sbjct: 416 ALTEGRNREVRRMFEAVGLTVSRLIRTRYGQFLLPRGLKRGRWQELDPTDVRGLM 470 >UniRef50_C8NZC3 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZC3_ERYRH Length = 246 Score = 263 bits (673), Expect = 3e-69, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 124/236 (52%), Gaps = 8/236 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL KFIA SR A I +V V+G V K+ E V +G + + Sbjct: 7 IRLQKFIAMSGYCSRRKAEVLINEGKVKVNGIKVTEQGLKVSTEDRVMVNGILINVEEKK 66 Query: 61 RYFMLNKPQGYVCS-TDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y++LNKP+G V S DD D +V+ + + ++ GRLD +TTG +++T+DG +++ Sbjct: 67 VYYILNKPRGIVSSANDDKDRESVVDLVPNDI--RVFPVGRLDRETTGALILTNDGDFAY 124 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHN-EKDLTKPAVLE---VITPTQVR 175 +T P+ K Y V++ ++ + +G+ + E + + ++ TQ Sbjct: 125 YMTHPKFDLSKIYRVSVRGRLSYEVTNSLKEGITIEGVEYKGVEISRVKYDAAKDKTQFS 184 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 +T+ EG+ Q++++FA G V++LHR +IG + +D +L G+YR L E+ ++ Sbjct: 185 ITLHEGKNRQIRKIFAHFGLPVLKLHRYQIGYLDID-ELKIGQYRELKPFEVKKLL 239 >UniRef50_D1PIW4 Pseudouridine synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIW4_9FIRM Length = 237 Score = 263 bits (673), Expect = 4e-69, Method: Composition-based stats. Identities = 98/234 (41%), Positives = 141/234 (60%), Gaps = 5/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLA-QQHG 59 MRLDK+++++ G++R+ + + I RV V+G + R A ++ + +A DG PLA Sbjct: 2 MRLDKYLSERTGLTRSESRKAITKGRVAVNGMVCRKADTQVAEDAAIAVDGTPLAGSYQK 61 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWS 118 Y MLNKP+G V ++ D TV+ + + L AGRLD +TG VL+TDDG + Sbjct: 62 YVYIMLNKPEGVVSASRDKRDTTVVDLVAADFPRRALFPAGRLDKTSTGFVLLTDDGALA 121 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEV--ITPTQVRL 176 H + SP HH +K YLVTL++P+ D FA GV L + + + PA E P V++ Sbjct: 122 HDLLSPAHHVDKQYLVTLDTPLTDAMRAGFAAGVTLADGETM-APAEAEPAGEDPCVVKV 180 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 T+ +G YHQ+KRMF G V LHR IGG+ LDA LAPG++R LT EE+A + Sbjct: 181 TLHQGVYHQIKRMFGVYGAGVNALHRYAIGGVALDAALAPGQWRELTAEELALL 234 >UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodictyon group RepID=Q3B289_PELLD Length = 250 Score = 263 bits (673), Expect = 4e-69, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 127/234 (54%), Gaps = 7/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +R+++++A SR A + + RVT++G + K++P D V DG+ AQ G Sbjct: 13 VRINRYLAMCGIASRRAADQMVLEGRVTINGVLASEPGVKVVPGKDEVIVDGSKFAQPEG 72 Query: 60 -PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 Y + NKP+ + ++ D VL F+D V +++ GRLD TTG++L+T+DG Sbjct: 73 RKIYILFNKPRNVITTSSDERNREMVLDFID--VNERVYPVGRLDRKTTGVLLLTNDGML 130 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP-TQVRL 176 ++++ P + +K Y+ L++P + G++L + + P +++ +QV + Sbjct: 131 ANKLMHPSSNVKKEYIAVLDAPFPQASLPLLTGGMRLSDTGEKVSPCQAKIMGDGSQVWI 190 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +I EG+ HQV+RMF +G V L R G+T+ DL G++R LT E+ + Sbjct: 191 SIHEGKNHQVRRMFKTLGFEVTRLDRPTYAGLTV-GDLRRGQWRHLTRTEVQQL 243 >UniRef50_UPI0001BCEF2E pseudouridine synthase n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCEF2E Length = 296 Score = 262 bits (672), Expect = 5e-69, Method: Composition-based stats. Identities = 82/235 (34%), Positives = 116/235 (49%), Gaps = 10/235 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHGP 60 RL K ++ SR A IR RV VDG V K P H + D P+ Sbjct: 4 RLQKILSNAGVASRRAAEDLIRAGRVAVDGVAVTELGRKFDPANHTITVDSKPIHSDEKR 63 Query: 61 RYFMLNKPQGYVCS-TDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+GY+ + DD TVL L + +L+ GRLD DT G++L+T+DG + Sbjct: 64 FYILLNKPRGYLSTARDDRGRKTVLDLLPD-FPARLYPVGRLDADTEGVLLITNDGAITQ 122 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP----TQVR 175 + PR +K Y + PV + + +G+ L + +T A L ++ T V Sbjct: 123 GLLHPRFEIDKVYHAEVAGPVTEGGLTRLRRGILLEDG--MTASAKLRILRADKGYTVVE 180 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I EGR QV+RMFAA+G V L R R +TL L+ G +R LT +EI + Sbjct: 181 TIIHEGRNRQVRRMFAAIGCRVCALRRVRFAMLTLRG-LSCGSFRHLTRDEIHEL 234 >UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytoplasma RepID=Q2NIZ3_AYWBP Length = 245 Score = 262 bits (672), Expect = 5e-69, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 123/237 (51%), Gaps = 11/237 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K +A SR A I R+ V+G+I+ K+ + D P+ + Sbjct: 3 RLQKVLAYANVASRRKAEILILEKRIKVNGKIISELGTKVSSSDIITLDDKPITKAT-YS 61 Query: 62 YFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 YF+LNKP G++ + D PTVL ++E +L+ GRLD +TTGL+L+T+DG + + Sbjct: 62 YFLLNKPNGFLSTAKDKKNRPTVLDLIEEASIQRLYPIGRLDFNTTGLLLITNDGDLTQK 121 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT-------PTQ 173 +T P K Y V + + + F KG+ + ++K L ++++ T Sbjct: 122 LTHPSFCIPKEYHVKINACLQKKDLSTFCKGIII-DKKYLAVCKEIDILKISYMPKPSTW 180 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 ++L I+EG+ QV++M A+G V++L R R +T++ +L G YRPL EI + Sbjct: 181 LKLVITEGKNRQVRKMMQALGYQVLKLKRYRYSFLTIE-NLTIGAYRPLKIHEIKKL 236 >UniRef50_B9KY92 Pseudouridine synthase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KY92_THERP Length = 282 Score = 262 bits (672), Expect = 5e-69, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 122/233 (52%), Gaps = 8/233 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL + +A SR A I RVTVDG +VR K+ PE ++ DG PL Sbjct: 9 RLQRVLAAHGVASRRKAEELILAGRVTVDGVVVRELGRKVDPERQEICVDGKPL-HSEPR 67 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 RY +L+KP GY+ +T D TVL + P ++ GRLD D++GL+L+T+DG + Sbjct: 68 RYIVLHKPVGYITTTADEYGRKTVLDLVQVP--ERVVPVGRLDRDSSGLLLLTNDGDLIY 125 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP--TQVRLT 177 RIT PR+ EK Y V ++ + E +GV + + + P T R+ Sbjct: 126 RITHPRYELEKEYEVLVDGFPPPEVEEALRRGVPVDGRPVRIRRLEAIRVEPQGTVYRVV 185 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I EGR ++R+F VG V+ L R R+G + L DL PG +R LT E+A++ Sbjct: 186 IHEGRNRIIRRVFERVGYPVLRLQRVRVGPLRL-GDLPPGRWRDLTASEVAAL 237 >UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1D5Q2_MYXXD Length = 745 Score = 262 bits (671), Expect = 6e-69, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 110/232 (47%), Gaps = 4/232 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 RL K++A+ SR A I RV V+ + V ++ P D V DG + Sbjct: 5 RLQKYLARAGVASRRHAEELITAGRVAVNNKTVTELGSRVEPGTDLVTVDGTLVTPPDES 64 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 YF+L KP G V + DP + E +L GRLD D G +L TDDG +H+ Sbjct: 65 SYFLLYKPVGVVTTLSDPQGRPTVANYVEETGKRLFPVGRLDYDAEGALLFTDDGALAHK 124 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRLTI 178 +T P +TYL ++ T ++ GV+L + + T +++ + Sbjct: 125 LTHPSFQVPRTYLAKVKGAPDTATLDKLRGGVRLEDGMATPVSVSVFEAAERNTWLKIVV 184 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +EGR H +KR+ AAVG+ VV L R G+ ++ L PGE RPL E+ + Sbjct: 185 AEGRPHLIKRLCAAVGHPVVRLFRPSYAGVGVEG-LRPGELRPLKTSEVELL 235 >UniRef50_A4SY81 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=A4SY81_POLSQ Length = 587 Score = 262 bits (671), Expect = 6e-69, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 111/237 (46%), Gaps = 7/237 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQ--- 57 ++L K +A SR I RV+V+G + ++ P V +G P+ ++ Sbjct: 197 VKLHKVLADVGMGSRRDMEDLIIQGRVSVNGLPA-HIGQRIGPTDQVRINGKPVHRKIQT 255 Query: 58 HGPRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQ 116 PR M +KP G + S DP+ PTV L +P + A GRLD +T GL+L T G+ Sbjct: 256 KPPRVIMYHKPAGEIVSQSDPEGRPTVFDRLPKPRQGRWIAVGRLDFNTEGLLLFTTSGE 315 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQV 174 ++R+ PR+ E+ Y V + ++ + G+ L + + + Sbjct: 316 LANRLMHPRYGVEREYAVRILGDLSQENTALLKSGITLDDGQAKFLRLAMGGGEGANRWY 375 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 + +SEGR +V+RMF AVG+ V L R R G L L G++ + I +++ Sbjct: 376 HVALSEGRNREVRRMFEAVGHTVSRLIRTRYGIFLLPPRLRRGKWEEIEAGGIYNLM 432 >UniRef50_C1ZE67 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZE67_PLALI Length = 554 Score = 262 bits (671), Expect = 6e-69, Method: Composition-based stats. Identities = 68/232 (29%), Positives = 112/232 (48%), Gaps = 5/232 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLL-PEHDVAYDGNPLAQQHGP 60 RL K +A SR I RVT+DG + + ++ VA DG L + Sbjct: 38 RLQKVLASAGYGSRRACEEYIEMGRVTIDGVVAKELGVRVDLSRQKVAVDGEKLRVEE-K 96 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 RYF+ +KP G +C+ DP T + P +L GRLD T GL+++T+DG + R Sbjct: 97 RYFLFHKPAGVLCTNSDPAGRTRVIDCFPPNVGRLFTVGRLDDGTEGLLIVTNDGDLAER 156 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPA--VLEVITPTQVRLTI 178 +T P+ + Y + + + Q +G+ + V + T + +T+ Sbjct: 157 LTHPKFGIPRIYRAVVAGNPSTEAINQLLEGLYFAEGRFRMSSVNRVKSQGSATVLEITM 216 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EG+ +++R+ A VG+ V++L R G I L DL G +R L+EEE++ + Sbjct: 217 REGQNREIRRLLARVGHKVMKLKRTHFGPIKL-GDLERGAHRKLSEEELSKL 267 >UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales RepID=C6J9Y4_9FIRM Length = 323 Score = 262 bits (671), Expect = 6e-69, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 126/231 (54%), Gaps = 7/231 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +R++K++++ SR A R I R+TV+G+ + K+ E ++ D P+ + Sbjct: 14 IRINKYLSEAGICSRREADRMIEEGRITVNGKKA-ESGQKVSLEDEICADNIPVHKNEKK 72 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 + NKP+G VCST D TV +LD P+ +++ GRLD ++ GL+L+T++G + Sbjct: 73 VLLLFNKPRGIVCSTKQQFDETTVTDYLDYPL--RVYPVGRLDKESQGLLLLTNEGDLVN 130 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 +I ++ EK Y VT+ PV + + +KGV + + +T+P + R+ ++ Sbjct: 131 KIMRAGNYHEKEYFVTVNKPVDREFVRRMSKGVPVLD--TVTRPCRVVQTGECSFRIILT 188 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +G Q++RM +G V +L R RI +TLD + GEYR +T +E + Sbjct: 189 QGLNRQIRRMCRYLGYEVQKLKRIRIMNLTLDG-IREGEYREITAQEWEEL 238 >UniRef50_Q2W4E4 Pseudouridine synthase n=20 Tax=cellular organisms RepID=Q2W4E4_MAGSA Length = 247 Score = 262 bits (671), Expect = 7e-69, Method: Composition-based stats. Identities = 107/232 (46%), Positives = 133/232 (57%), Gaps = 8/232 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL + IA S+ I+ RVT+ V + K D+ DG PL G Sbjct: 15 MRLIRLIANLGYGSQRDVKAMIKAGRVTLADGTVLDDGTK-AAHDDIRVDGEPLDPPPG- 72 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK---LHAAGRLDIDTTGLVLMTDDGQW 117 ML+KP+GY CST DP V L E + + GRLD D+TGL+L+TDDG Sbjct: 73 LVLMLHKPEGYTCSTSDPGR-IVYELLPERFMHRNPIVAPVGRLDRDSTGLLLLTDDGPL 131 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKG-VQLHNEKDLTKPAVLEVITPTQVRL 176 +HRITSP+ H KTY VTL P++ + FA G + L +E PA L V P R+ Sbjct: 132 AHRITSPKRHVPKTYEVTLARPLSGEEGAVFASGTLMLRSESTPLAPAELVVSGPQTARI 191 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 TI+EGRYHQVKRMFAAVGNHV LHR IGG+ L DLA G++RPL+ EIA Sbjct: 192 TITEGRYHQVKRMFAAVGNHVERLHRAAIGGLDL-GDLAEGQWRPLSPAEIA 242 >UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_1464 n=4 Tax=Bacteria RepID=Y1464_AQUAE Length = 249 Score = 262 bits (670), Expect = 8e-69, Method: Composition-based stats. Identities = 81/236 (34%), Positives = 129/236 (54%), Gaps = 10/236 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +R++KF+++ SR A + I RV V+GE+VR+ K+ PE D V DG P+ + Sbjct: 4 VRINKFLSEAGVASRRKAEKLILEGRVKVNGEVVRSLGVKVNPEVDIVEVDGKPV-KPQR 62 Query: 60 PRYFMLNKPQGYVCSTDD-PDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 RY +LNKP Y+ PD + L + + ++ GRLD +T GL+++T+DG+ + Sbjct: 63 KRYIILNKPCCYLTQLGRSPDGRKTIEELIKDIPERVFPVGRLDYNTEGLLILTNDGELA 122 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT----PTQV 174 +RI PR+ K YL +E V T ++ +G++L + KP + ++ T + Sbjct: 123 NRILHPRYKLPKVYLALVEGKVDQKTLKRMKQGIELEDG--FAKPDNIRIVRYEGKNTLL 180 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +T EGR H VKR A G+ V L R IG I L L+PG++R L + E+A + Sbjct: 181 EITFHEGRKHLVKRFLGAFGHKVKRLKRIAIGPIKL-GKLSPGKWRELNQGELAQL 235 >UniRef50_A9ITY6 Pseudouridine synthase n=6 Tax=Betaproteobacteria RepID=A9ITY6_BORPD Length = 588 Score = 261 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 111/235 (47%), Gaps = 7/235 (2%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQ---HG 59 L K +A SR I RV+V+GE + ++ P V +G P+A+ Sbjct: 125 LHKVLADAGIGSRREMEELITAGRVSVNGEPA-HIGQRVAPSDQVRVNGKPVARPNTKKP 183 Query: 60 PRYFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 PR + +KP G + S DDP +V L + K + GRLD++T GL++ T G + Sbjct: 184 PRVILYHKPAGEIVSHDDPGGRASVFARLPKLRTGKWLSVGRLDLNTEGLLIFTTSGDMA 243 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRL 176 +RI PR+ E+ Y V + + D T + +G++L + + + R+ Sbjct: 244 NRIMHPRYGTEREYAVRVLGEMDDATRKSLVEGIELEDGQAAFGALDYLGGDGSNRWYRV 303 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 T+ EGR +V+RMF +VG V L R R G + L L G + L + +++ Sbjct: 304 TLQEGRNREVRRMFESVGVTVSRLIRTRFGDLVLPRTLRRGRWEELDSSLVTALM 358 >UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N1S2_9BACT Length = 241 Score = 261 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 81/228 (35%), Positives = 117/228 (51%), Gaps = 4/228 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K ++ SR AG I+ RVTV+GE V F++ P V YDG P+ + Sbjct: 8 RLVKILSAAGIASRRGAGDLIKAGRVTVNGETVFEPGFRVAPGDRVEYDGVPVLAEERKV 67 Query: 62 YFMLNKPQGYVCSTDDPDH-PTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y MLNKP+GYVC+ DP + + +L +AGRLD D+ GL+L ++DG + R Sbjct: 68 YIMLNKPRGYVCTNADPHADLKAVDLIRLTPPLRLFSAGRLDKDSEGLILFSNDGDYVAR 127 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +T PRH K Y V + EQ +GV E L K + +T++E Sbjct: 128 LTHPRHEILKVYQVRVRREFKPAELEQMRRGVLERGE--LLKVHAVSRCGDCTYLITLNE 185 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 G+ +++R+ AA+G+ L R +IG + L L G +R LT EIA Sbjct: 186 GKNREIRRLTAALGSPTRRLKRLQIGALRL-GGLPVGNWRELTPAEIA 232 >UniRef50_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQL4_9PLAN Length = 517 Score = 261 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 114/233 (48%), Gaps = 8/233 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 RL K +A SR I+ RV VDG+ V K+ PEH + DG L Sbjct: 18 RLHKVLAFAGIDSRRKCEALIQEGRVEVDGKFVTELGMKVDPEHQEILVDGQRLKFGKR- 76 Query: 61 RYFMLNKPQGYVCSTDDPDHPT-VLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y+MLNKP G + + DP T V+ + + V +L GRLD + GL+++T+DG+ ++ Sbjct: 77 VYYMLNKPPGVLSTNFDPAGRTRVIDMVPQDV--RLFTIGRLDRASEGLIVVTNDGELAN 134 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP--TQVRLT 177 R+ PR+ EKTY V + D +GV L V++ T + + Sbjct: 135 RLAHPRYEIEKTYRVEVAGHPEPDAITFVRRGVHLAEGFVQPVSVVMKRKNKQSTTLEVI 194 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EG+ +++R+ A +G+ V+ L R +G + L ++ G +R L E ++ Sbjct: 195 LDEGKNREIRRLMAKIGHKVLRLKRIAMGPLRL-GEMPEGAFRELKSAETKAL 246 >UniRef50_B3DRY9 Pseudouridine synthase n=7 Tax=Bifidobacterium RepID=B3DRY9_BIFLD Length = 256 Score = 261 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 116/234 (49%), Gaps = 5/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 +RL K +AQ SR I RV VDGE+V ++ P + V DG+ + Sbjct: 18 IRLQKLLAQAGFGSRRKCEDMITEGRVEVDGELVTELGTRVDPHKQQVRVDGSRVRVNPN 77 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 LNKP+ + + DDP L + ++ GRLD D+ GL+LMT+DG+ S Sbjct: 78 HVTLALNKPRKVLSAMDDPKGRYTLRDIVGDKYERIFHMGRLDYDSEGLILMTNDGELSQ 137 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQF-AKGVQLHNE--KDLTKPAVLEVITPTQVRL 176 + P++ EKTY+ TLE ++ + GVQL + K + T V++ Sbjct: 138 HVMHPKYEVEKTYVATLEGKISGTVCRRLVTTGVQLDDGWIKLDHCAIIDSSRDHTMVKV 197 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + G+ V+R+F ++G V L R +IG I L DL PG YR L++ E+ S+ Sbjct: 198 VLHSGKNRIVRRIFGSIGFPVKRLVRTQIGPIKL-GDLKPGSYRVLSQTEVRSL 250 >UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6G735_9DELT Length = 300 Score = 261 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 81/240 (33%), Positives = 123/240 (51%), Gaps = 12/240 (5%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +RL KF+A SR A I V V+G++VR ++ PE D V G P+ Q Sbjct: 31 VRLQKFMASAGVASRRKAEELITAGVVRVNGQVVRELGTRVFPERDRVTVRGEPI-QAES 89 Query: 60 PRYFMLNKPQGYVCST----DDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDG 115 Y++LNKP G V S D+ PTV+ L V+ +L+ GRLD + G++L+T+DG Sbjct: 90 KVYYVLNKPDGVVSSAAGSVDERGRPTVISLL-HGVSERLYPVGRLDFHSRGVLLLTNDG 148 Query: 116 QWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL----EVITP 171 + +T PRH KTY V + + ++ + GV+L + A L E T Sbjct: 149 GLAEALTHPRHGVVKTYHVKFQGKLTEEQEQLLRDGVELDDGAITRPVAELFAFRETATN 208 Query: 172 TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 ++ I EG Q++RM A+G+ V++L R IG IT D + GE+R L E+ ++ Sbjct: 209 VWYQIGIREGLNRQIRRMGEAIGHPVLKLIRVAIGDITADG-VPEGEFRALNATEVGQLL 267 >UniRef50_D1C7P2 Pseudouridine synthase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C7P2_SPHTD Length = 337 Score = 261 bits (668), Expect = 1e-68, Method: Composition-based stats. Identities = 84/235 (35%), Positives = 123/235 (52%), Gaps = 10/235 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL + +A SR A I RVTVDG++VR ++ PE ++ DG L + Sbjct: 3 RLQRVLAAHGVASRRKAEELITAGRVTVDGQVVRELGVRVDPERQEIRVDGKRL-RPERR 61 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 RY MLNKP GY+ + D TV+ + P ++ AGRLD T GL+L+T+DG Sbjct: 62 RYIMLNKPPGYITTVSDERGRRTVMDLVQVP--ERVVPAGRLDRPTAGLLLLTNDGDLLF 119 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEK---DLTKPAVLEVITPTQVRL 176 RIT PR+ EK Y V ++ + +Q +GV + E+ D +P +E T +R+ Sbjct: 120 RITHPRYELEKEYEVLVDGHPPPEVLDQLRRGVTVDGERVVPDQVRPLRIE-EAGTVLRI 178 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 I EGR V+RM VG V++L R RIG I + + G +R LT E+ ++ Sbjct: 179 VIHEGRNRIVRRMMDRVGYPVLKLTRTRIGPIHVRG-VPLGAWRDLTPGEVMQLL 232 >UniRef50_Q6SI36 Pseudouridine synthase n=1 Tax=uncultured marine bacterium 105 RepID=Q6SI36_9BACT Length = 255 Score = 261 bits (668), Expect = 1e-68, Method: Composition-based stats. Identities = 73/238 (30%), Positives = 119/238 (50%), Gaps = 8/238 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL K +A SR A R I RVTV+G V K P+ D+ DG + Sbjct: 6 VRLQKVLASAGISSRRAAERLIEVGRVTVNGRSVTKLGAKADPDLDDIRVDGRKVKTGRP 65 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y ++ KP+GYV + DP+ + L V ++ GRLD D+ GLV++T+DG + Sbjct: 66 RIYLLVCKPRGYVTTRFDPEGRRTILNLISNVREYVYPVGRLDYDSEGLVILTNDGTLAA 125 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL------EVITPTQ 173 R+T PR+ E+ Y V + + + GV ++ + + + Sbjct: 126 RLTHPRYGVERVYEVRVRGVPSQAAIDSLRHGVLINGRRTASSSVKFLRRLKAKSSENAL 185 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 +R+ I EGR QV++M A+G+ V+ L R +IG + D+ L G++R LT E+A+++ Sbjct: 186 LRVAIREGRNRQVRKMCEAIGHPVIRLRRTQIGPLR-DSSLKVGKHRLLTTSEVAALM 242 >UniRef50_Q2LSY4 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSY4_SYNAS Length = 251 Score = 261 bits (668), Expect = 2e-68, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 119/233 (51%), Gaps = 4/233 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLL-PEHDVAYDGNPLAQQHGP 60 RL K +A+ SR A IR RV+V+ EIVR K ++ DG + + Sbjct: 4 RLQKILARSGVASRRKAEEMIREGRVSVNSEIVRELGSKADIERDEIRVDGKLICAEETK 63 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y MLNKP+GYV + DP ++ L + +L GRLD D+ GL+L+T+DG ++ R Sbjct: 64 VYVMLNKPRGYVTALSDPQKRPLVIHLLPELGVRLFPVGRLDYDSEGLLLLTNDGGFAQR 123 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP--TQVRLTI 178 + PR+ KTY V + + + KG++L + K LE I P + + + I Sbjct: 124 VQHPRYRISKTYRVKISGRLNAAEFNRLQKGLELEDGKFAPDEVALEEINPKSSWLTMKI 183 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 SEGR ++R F +G+ V+ L R + + L +L G+YR L E+ ++ Sbjct: 184 SEGRNRVIRRAFEQLGHEVLRLIRTAVADLHL-GNLREGDYRLLKGWEVQQLL 235 >UniRef50_A5KLG0 Pseudouridine synthase n=8 Tax=Bacteria RepID=A5KLG0_9FIRM Length = 261 Score = 261 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 98/260 (37%), Positives = 143/260 (55%), Gaps = 32/260 (12%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLL-PEHDVAYDGNPLAQQHG 59 +RLDK++ + +R+ +EI V+V+GEI + A K+ + ++ + G + G Sbjct: 3 LRLDKYLTEMGCGTRSQVKKEILKGSVSVNGEIAKKAERKVDTEKDEIIFKGEKI-FYAG 61 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 YFMLNKP G V +T+D TV+ + E L AGRLD DT GL+L+T+DGQ +H Sbjct: 62 YEYFMLNKPAGVVSATEDKKERTVIDLIKESKRKDLFPAGRLDKDTEGLLLITNDGQLAH 121 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT--------- 170 R+ SP+ H +K Y ++ V ++ F KGV + +EK T PA LE+++ Sbjct: 122 RLLSPKKHVDKIYYAKIKGIVTEEDVRLFEKGVHIGDEK-PTMPAALEILSVQKERRKEK 180 Query: 171 --------------------PTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITL 210 +++ LTI EGR+HQVKRMF AVG VV L R + G +TL Sbjct: 181 IKEQKILPETKNETDEKEDGYSEIYLTIKEGRFHQVKRMFRAVGKEVVYLKRIQFGTLTL 240 Query: 211 DADLAPGEYRPLTEEEIASV 230 D L PG+YR LTEEE+ + Sbjct: 241 DPSLKPGQYRKLTEEEVEQL 260 >UniRef50_C0W3E8 Pseudouridine synthase n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W3E8_9ACTO Length = 325 Score = 261 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 16/244 (6%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL K +A SR I RV+VDG +V ++ P ++ DG+ + Sbjct: 77 RLQKVLAHAGVASRRACEEIIAAGRVSVDGVVVTEPGVRVDPSRQEIRVDGSRVLTDPDV 136 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYF-----------LDEPVAWKLHAAGRLDIDTTGL 108 +L+KP G V + +DP PTV L+ P + +L GRLD +T GL Sbjct: 137 ITVLLHKPAGVVTTMEDPQGRPTVADLAEQFISEHRTELEHPESVRLVHVGRLDTETEGL 196 Query: 109 VLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEV 168 +L+++DG +HR+ P KTY+ +E V + +G++L + V++ Sbjct: 197 LLLSNDGDLAHRLMHPSFEISKTYVAIVEGQVEGWVPRKLRRGIELDDGLAQADRVVVKD 256 Query: 169 ITP--TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 P + V +T+ G+ V+RM AVG+ V L R ++G + + L PG+ R LT EE Sbjct: 257 AGPSGSIVEITLHSGKNRIVRRMLDAVGHPVTRLARTKLGPLGI-GGLRPGQMRRLTGEE 315 Query: 227 IASV 230 I ++ Sbjct: 316 ITAL 319 >UniRef50_B1XJP9 Pseudouridine synthase n=3 Tax=Chroococcales RepID=B1XJP9_SYNP2 Length = 259 Score = 261 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 85/237 (35%), Positives = 131/237 (55%), Gaps = 10/237 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 R+ K +A+ SR A + I RVT++G+ V + PE + DG PL P Sbjct: 4 RVQKILARWGIASRRGAEKLILAGRVTLNGKPV-QLGDQADPEGDRLCVDGKPLKATERP 62 Query: 61 R--YFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWK--LHAAGRLDIDTTGLVLMTDDG 115 R Y++++KP+G V + DP TVL L P+ +H GRLD +TG +L+T+DG Sbjct: 63 RHYYYLIHKPKGVVSTCADPKGRSTVLDLLPPPLRQGKGIHPIGRLDAQSTGALLLTNDG 122 Query: 116 QWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT--PTQ 173 ++ +T PR+H KTY V L+ V + +Q+ +GV L + + L L+ IT T Sbjct: 123 NFTLALTHPRYHIPKTYRVWLKGKVPEHVLDQWRQGVMLGDRRTLPTQIHLKTITQDKTC 182 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + + ++EGR Q++R+ +G VV+LHR IG + L DL G+ RPLT+ EI + Sbjct: 183 IDIMLTEGRNRQIRRVAEQLGFPVVKLHRLAIGNLHL-GDLQRGQARPLTKAEIKQL 238 >UniRef50_C5BI29 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=C5BI29_TERTT Length = 238 Score = 260 bits (666), Expect = 2e-68, Method: Composition-based stats. Identities = 106/236 (44%), Positives = 140/236 (59%), Gaps = 7/236 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF+A SR+ ++ R+ V+G+ + L + +V D PL + Sbjct: 1 MRLDKFVADNTSYSRSQVRGLLKAKRIRVNGQTALAPSAALKSDDEVTLDDAPLQARSD- 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFL------DEPVAWKLHAAGRLDIDTTGLVLMTDD 114 Y ML+KP GYVC+ D +HPTV +L AGRLD+DTTGLVL+T D Sbjct: 60 VYLMLHKPAGYVCANTDAEHPTVFDLPGFSARYSNADIARLQIAGRLDLDTTGLVLITSD 119 Query: 115 GQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQV 174 GQW+HRITSPR C K Y V +P+A +T FA+GV LH EK T PA LE+++ Sbjct: 120 GQWNHRITSPRQKCRKAYYVECAAPIAAETKSAFAEGVLLHGEKRPTLPAELELLSANTA 179 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 L I +G YHQVKRMFA+ GN V+ LHR +IG + L+ DL PG+ R LT +EI + Sbjct: 180 NLYIEQGIYHQVKRMFASTGNKVLRLHRFQIGALALETDLLPGDMRALTSDEIRLL 235 >UniRef50_C4XSY8 Pseudouridine synthase n=11 Tax=Desulfovibrionales RepID=C4XSY8_DESMR Length = 322 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 80/237 (33%), Positives = 116/237 (48%), Gaps = 9/237 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLA-QQHG 59 R++K +A SR A I RVTV+G +V A ++ P D +A DG P+ Sbjct: 10 RINKALASAGVCSRRHADDLIAAGRVTVNGAVVTEAGLRIDPARDALAVDGAPVNLAPEI 69 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDE-PVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 P L+K G V + DP+ PTV L E +L GRLD + GL+L+T DG+ Sbjct: 70 PITLALHKKPGVVTTASDPEGRPTVFDGLPEVWRGKRLFPVGRLDFFSEGLLLLTTDGEL 129 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ---- 173 + R+T PR H K Y VT+ V D A+G++L + L A V P Q Sbjct: 130 ALRLTHPRWHVPKRYRVTVRGQVTPDMLGTMARGMRLAEGERLAPVAARVVEGPAQDRSI 189 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + + + +G Q++RM +G V+ L R G + L DL G R LT E+A++ Sbjct: 190 LEMELHQGVNRQIRRMCRDLGLTVLRLARVSQGPVAL-GDLPLGACRELTPAELATL 245 >UniRef50_Q140U9 Pseudouridine synthase n=80 Tax=Proteobacteria RepID=Q140U9_BURXL Length = 633 Score = 260 bits (665), Expect = 3e-68, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 112/235 (47%), Gaps = 7/235 (2%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQ---HG 59 L K +A+ SR I RV+V+GE + +++P V +G P+ ++ Sbjct: 219 LHKVLAEAGMGSRRDMEELIVAGRVSVNGEPA-HIGQRIMPTDQVRINGKPVKRKLASKP 277 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 PR + +KP G + S DP+ P+V L K A GRLD +T GL+++T G + Sbjct: 278 PRVLLYHKPTGEIVSHADPEGRPSVFDKLPPMKTAKWLAVGRLDFNTEGLLMLTTSGDLA 337 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRL 176 +R PR+ E+ Y V + +A+ ++ GV+L + T + Sbjct: 338 NRFMHPRYSVEREYAVRVVGELAEGMRQKLLHGVELDDGPANFLRIRDGGGEGTNHWYHV 397 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 ++EGR +V+RMF A G V L R R G I+L L G + L + ++ +++ Sbjct: 398 ALAEGRNREVRRMFEAAGLMVSRLIRTRHGPISLPKGLKRGRWEELEDNQVRALM 452 >UniRef50_A0L6G3 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L6G3_MAGSM Length = 332 Score = 260 bits (665), Expect = 4e-68, Method: Composition-based stats. Identities = 72/236 (30%), Positives = 115/236 (48%), Gaps = 8/236 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K++A+Q SR I+ RV+++GE+V K+ VA DG + Q Sbjct: 71 RLQKWLAEQGLCSRREGEVWIQEGRVSINGEVVTELGVKVAKRDRVAVDGQLVTPQRSRD 130 Query: 62 Y-FMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 +L+KP+ +C+ DP T+ ++ + +L GRLDI++ GL+++T DGQ +H Sbjct: 131 TAIILHKPKSIICTRSDPQGRRTIFDLIENHGSSRLITVGRLDINSEGLIILTSDGQLAH 190 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAK-GVQLHNEKDLTKPAVL----EVITPTQV 174 + P + Y V + EQ GV+L + VL E + Sbjct: 191 GLMHPSREVPRVYRVKTHGILLASQLEQIRTVGVRLEDGPTGPLEIVLDRGREQGNNSWY 250 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +T+ EGR +V+R+F G V L R GGI+L +L PG +RP+T +E + Sbjct: 251 TITLREGRNREVRRIFDHFGLQVARLLRVGYGGISL-GNLEPGAWRPVTVDEWNML 305 >UniRef50_D2R7V9 Pseudouridine synthase n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7V9_9PLAN Length = 811 Score = 259 bits (664), Expect = 5e-68, Method: Composition-based stats. Identities = 67/234 (28%), Positives = 122/234 (52%), Gaps = 8/234 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHGP 60 RL K +A SR I RV VDG++V ++ P + + DG L + Sbjct: 35 RLQKVLAAAGIGSRRDCEELITEGRVDVDGKVVTELGTRVDPVKQTIRVDGEALRKPQR- 93 Query: 61 RYFMLNKPQGYVCSTDDPDHPT-VLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 YF++NKP+G V + D T V+ + P ++ A GRLD + GL+++T+DG++++ Sbjct: 94 LYFVVNKPEGVVTTNYDQAGRTRVIDLV--PTDERVFAVGRLDRASEGLIIVTNDGEFAN 151 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEV--ITPTQVRLT 177 R+T PR+ KTYLV + + + +G+ L + ++ T + + Sbjct: 152 RVTHPRYGVTKTYLVRVAGEASTAELAKLRRGIHLSDGFCKVDAIQVKRRHKQSTDMVIQ 211 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 +SEG+ +++R+ A +G+ V++L R +G + L +L G +R L ++EI ++ Sbjct: 212 LSEGKNREIRRILARIGHKVLKLKRLAVGSLKL-GELPLGAWRWLDKQEIERLL 264 >UniRef50_Q3IC94 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q3IC94_PSEHT Length = 327 Score = 259 bits (663), Expect = 5e-68, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 6/227 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL+KFI+ SR A + I RVTV+G K+ V DG L Sbjct: 6 RLNKFISDTGFCSRREADKYIEDGRVTVNGIRP-EMGVKVSSTDVVLVDGKTLKAIPKRV 64 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y NKP G C+T+ ++ ++ P ++ GRLD + GL+ +T++G ++I Sbjct: 65 YIAYNKPVGITCTTERKIQSNIVKAVNYPD--RIFPIGRLDRPSEGLIFLTNEGDIVNKI 122 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEG 181 ++ EK Y+VT++ P+ + GV + + +TK + Q + +++G Sbjct: 123 LRAGNNHEKEYVVTVDKPLNRQFVAKMGNGVPILD--TITKKCKVTQTGAQQFTIILTQG 180 Query: 182 RYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 Q++RM +G VV L R RI +TL L G++R LTE+E+A Sbjct: 181 LNRQIRRMCEYLGYEVVTLKRVRIMNVTLKG-LKVGQWRHLTEQEMA 226 >UniRef50_Q47QM5 Pseudouridine synthase n=3 Tax=Actinomycetales RepID=Q47QM5_THEFY Length = 375 Score = 259 bits (663), Expect = 6e-68, Method: Composition-based stats. Identities = 85/236 (36%), Positives = 131/236 (55%), Gaps = 7/236 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEH-DVAYDGNPLAQQHG 59 +RL K +AQ SR I RV+VDG+IVR ++ PE ++ DG + Sbjct: 135 IRLQKALAQAGVASRRACEELIAAGRVSVDGQIVRRFGARVDPEKSEIRVDGMRVVTSQN 194 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDE--PVAWKLHAAGRLDIDTTGLVLMTDDGQ 116 RY+ LNKP+G V + DP+ PT+ + + P+ +L GRLD DT GL+L+T+DG+ Sbjct: 195 LRYYALNKPRGVVSTMFDPEGRPTIGDYAAQIGPIEERLFHVGRLDTDTEGLILLTNDGE 254 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNE--KDLTKPAVLEVITPTQV 174 ++R+T PR+ KTYL + PV D Q KGV+L + K + + + V Sbjct: 255 LANRLTHPRYKVTKTYLAKVPGPVPRDVIRQIRKGVELDDGFVKVDSFRVIDNIEPKALV 314 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + + EGR H V+R+ AVG+ V +L R +IG + L+ +L G R LT +E++ + Sbjct: 315 EIRLHEGRKHIVRRLMKAVGHPVSDLARTQIGPVGLN-NLKSGTIRALTSQEVSEL 369 >UniRef50_Q042N1 Pseudouridine synthase n=3 Tax=Lactobacillus gasseri RepID=Q042N1_LACGA Length = 245 Score = 259 bits (663), Expect = 6e-68, Method: Composition-based stats. Identities = 90/235 (38%), Positives = 133/235 (56%), Gaps = 9/235 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR+DK++A SR I+ VTV+GE+V ++ VA DGN +A Q Sbjct: 13 MRIDKYLANMNVGSRKEVHSLIKKKVVTVNGELVTIPKQQVKETDLVAVDGNKIAYQQ-Y 71 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLD-EPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 YF+LNKP+G + +T+D TV+ L + + GRLD DTTGL+L+T+DG +H Sbjct: 72 HYFLLNKPKGVISATEDRSQQTVISLLKTKDRYQGIAPVGRLDKDTTGLLLLTNDGALAH 131 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP------TQ 173 + +P H K Y + +TA++FA+G+ L + L KPA L+++ +Q Sbjct: 132 ELLAPNKHVAKVYRAKIAGVPDPETAKKFAQGLILGDGTKL-KPAKLKILKQDQDNNLSQ 190 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 + + I EG+YHQ+KRMF AVG V+EL R +G + L ADL GEY+ + EI Sbjct: 191 IEIQIQEGKYHQIKRMFGAVGMKVLELDRVSMGKLHLPADLKRGEYKEIDLAEIK 245 >UniRef50_C7H4Z6 Pseudouridine synthase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H4Z6_9FIRM Length = 235 Score = 259 bits (662), Expect = 6e-68, Method: Composition-based stats. Identities = 92/233 (39%), Positives = 140/233 (60%), Gaps = 5/233 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDK++A+ +R+ A + RVTV+G + + +L VA DG PLA + Sbjct: 1 MRLDKYLAETAQCTRSEAKTLLNRGRVTVNGAVCKKGDTQLREGDSVAVDGAPLAYRQ-F 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWSH 119 Y MLNKP+G V ++ D TV+ + + + L GRLD +TG VL+TDDG ++H Sbjct: 60 VYLMLNKPEGVVSASTDKRDTTVVDLIGDAYPRRELFPVGRLDKTSTGFVLLTDDGGFAH 119 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT--QVRLT 177 I +P+ H KTY V +++P+ ++ FA+GV L + L+ PA +E +TP V++ Sbjct: 120 EILAPKRHVSKTYTVVIDTPLTEEMRRGFAEGVTLADGTALS-PAEVEALTPDGLTVKVR 178 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + +G YHQ+KRMF G V LHR+ IGG+ LD LAPG++R L+ EE+ ++ Sbjct: 179 LRQGVYHQIKRMFGVYGAGVNALHRDAIGGLALDPALAPGQWRELSAEEVTAI 231 >UniRef50_C4V2S0 Pseudouridine synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V2S0_9FIRM Length = 290 Score = 259 bits (662), Expect = 6e-68, Method: Composition-based stats. Identities = 85/235 (36%), Positives = 118/235 (50%), Gaps = 10/235 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL K I+ SR A IR RVTVDG V K H++A DG P+ + Sbjct: 4 RLQKIISNAGAASRRAAEALIRAGRVTVDGLPVTALGGKYDAARHEIAVDGTPIRRNERR 63 Query: 61 RYFMLNKPQGYVCST-DDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +L+KP+G + + DD TVL L +L+ GRLD DT GL+++T+DG + Sbjct: 64 FYILLHKPRGCLSTAYDDRGRRTVLDLLPH-FPARLYPVGRLDADTEGLLIITNDGAMTQ 122 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TPTQVR 175 + PR +K Y + V +D G+ L + + T PA L V+ T V Sbjct: 123 GLLHPRFEIDKVYRAEVTGNVTEDGLTALRNGILLDDGR--TAPARLRVLHREGERTVVE 180 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I EGR QV+RMFAA+G V L R R +TLD ++ G +R LT +EI + Sbjct: 181 TIIHEGRKRQVRRMFAAIGCRVQRLCRVRFAMLTLDG-VSCGSFRHLTSDEIHEL 234 >UniRef50_A1K7C2 Pseudouridine synthase n=1 Tax=Azoarcus sp. BH72 RepID=A1K7C2_AZOSB Length = 356 Score = 259 bits (662), Expect = 7e-68, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 113/235 (48%), Gaps = 7/235 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLA---QQH 58 RL K +AQ SR + R++V+G + K+ P V +G + Q Sbjct: 92 RLQKVLAQAGVASRREIEELVVAGRISVNGLPA-SLGQKIGPGDRVKLNGKLIPLRFSQR 150 Query: 59 GPRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 PR + +KP+G + S DDP+ PTV L + A GRLD +T+GL+L T+DG Sbjct: 151 SPRVLVYHKPEGEIVSRDDPEGRPTVFERLPLLRKGRWLAVGRLDFNTSGLLLFTNDGDL 210 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT--PTQVR 175 ++R+ PR+ + Y V L + ++ + G+QL + V R Sbjct: 211 ANRLMHPRYELTREYAVRLLGQLTEEQGQSLVDGIQLEDGPARFLSLVDAGGEGVNHWYR 270 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +T++EGR +V+RMF AVG V L R R G + L A L G + L E + ++ Sbjct: 271 VTLAEGRNREVRRMFEAVGLTVSRLMRVRYGPVELPARLKRGMWMELPEADACAL 325 >UniRef50_Q12AB3 Pseudouridine synthase n=8 Tax=Proteobacteria RepID=Q12AB3_POLSJ Length = 544 Score = 259 bits (662), Expect = 7e-68, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 115/234 (49%), Gaps = 7/234 (2%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQ---QHG 59 L K +AQ SR + I R++V+ E + ++ V +G P+ Sbjct: 99 LHKVLAQAGLGSRLEMEQLILEGRISVNAEPA-HIGQRIQFGDTVKVNGKPIRVRIDPPP 157 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 PR +KP G V + DDP PTV L + K + GRLD++T GL+L+T G+ + Sbjct: 158 PRVIAYHKPSGEVVTHDDPQNRPTVFRRLPKLFQGKWQSVGRLDLNTEGLLLLTSSGELA 217 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNE--KDLTKPAVLEVITPTQVRL 176 +++ PR E+ Y V + ++++ ++ +GV L + + + A R+ Sbjct: 218 NKLMHPRFGLEREYAVRVLGALSNEEKKRLLEGVTLDDGVAQFSSIEAGGGEGANCWYRV 277 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 TISEGR +V+RMF AVG+ V L R R G + L L G + L E +I ++ Sbjct: 278 TISEGRNREVRRMFEAVGHAVSRLIRIRYGAMLLPRGLKRGAFVELDERDIWAL 331 >UniRef50_D2B9T7 Pseudouridine synthase n=18 Tax=Actinobacteria (class) RepID=D2B9T7_STRRD Length = 621 Score = 259 bits (662), Expect = 7e-68, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 113/233 (48%), Gaps = 4/233 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVA-YDGNPLAQQHG 59 +RL K +AQ SR I RVTVDG++VR ++ P V DG L Sbjct: 384 VRLQKVLAQAGVASRRACEDMIGDGRVTVDGQVVRRFGARVDPAKQVIHVDGKRLPTMPD 443 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +NKP G V + DPD L +L GRLD +T GL+L+T+DG+ ++ Sbjct: 444 LVYLAINKPIGVVSTMSDPDGRPSLADFVADRTERLFHVGRLDTETEGLILLTNDGELAN 503 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNE--KDLTKPAVLEVITPTQVRLT 177 R+T P + +K Y + + D + KG++L + K + V E V + Sbjct: 504 RLTHPSYGVQKKYWAKVPGRIERDLGRRLKKGIELEDGIAKADSFTLVQEHGQQALVEVV 563 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EGR H V+RM VG+ V++L R G + L L PG R LT +E+ + Sbjct: 564 LHEGRKHIVRRMLEEVGHPVIDLARIEFGPVKL-GRLKPGTVRALTVKEVGEL 615 >UniRef50_A8SLU4 Pseudouridine synthase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLU4_9FIRM Length = 230 Score = 259 bits (662), Expect = 7e-68, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 121/233 (51%), Gaps = 9/233 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++KFIA SR A + +V V+G++ + +V +G + + Sbjct: 1 MRINKFIANSGYCSRRNADLLLEQGKVFVNGKLATK-GIDISENDEVLVEGKKIKLEEAK 59 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 +Y++LNKP GY + VL +D +++ GRLD D+ GL+L+T+DG + Sbjct: 60 KYYLLNKPIGYSSTAKAQFQEKIVLDLIDS--KERIYPVGRLDKDSFGLLLLTNDGDLAF 117 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT--PTQVRLT 177 R+T P H+ EK Y+V ++ + + ++ + G+ L +T+ A E++ V++ Sbjct: 118 RLTHPSHNVEKEYIVKVDKTLKESDLKKLSSGIMLEG--KITRKARFEMLDFKSNIVKVF 175 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EGR Q+++MF + +V+ L R G I L L G YR L++EEI + Sbjct: 176 LKEGRNRQIRKMFKTLDYNVISLERIAFGKIKL-GKLKVGNYRELSKEEIEYL 227 >UniRef50_A6EPE0 Pseudouridine synthase n=1 Tax=unidentified eubacterium SCB49 RepID=A6EPE0_9BACT Length = 291 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 120/229 (52%), Gaps = 4/229 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL+K I+ SR A + I +VT++G V + + +P+ + +GN + + + Sbjct: 9 RLNKAISDSGYCSRRQADKLIEEGKVTLNGNPV-SLGDRAMPDDVIHVEGNLITENNNLV 67 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y +LNKP G C+TD V+ ++D ++ GRLD + GL+LMT+DG ++I Sbjct: 68 YIILNKPVGITCTTDLRVEGNVVDYIDH--KERIFHVGRLDKPSEGLLLMTNDGDIVNKI 125 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEG 181 + EK Y V ++ P+ + + G+ L + TK +E ++ R+ + +G Sbjct: 126 LRAGNSHEKEYFVKVDRPITTEFIRRMGNGIPLEELETTTKKCFVEQVSRFVFRIILVQG 185 Query: 182 RYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 Q++RM + V+EL RERI I L DL GE+R LT+EE+ + Sbjct: 186 LNRQIRRMCEYLDYEVMELKRERIMNIEL-GDLPYGEWRDLTKEELQGL 233 >UniRef50_C8WAL4 Pseudouridine synthase n=7 Tax=Coriobacteriaceae RepID=C8WAL4_ATOPD Length = 279 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 83/254 (32%), Positives = 126/254 (49%), Gaps = 27/254 (10%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 MRL +F+A+ SR + R + RVTV+G++V K+ P VA DG + Sbjct: 9 MRLQRFLARAGVASRRGSERLMTSGRVTVNGQVVTELGSKVDPLVDVVAVDGVVCSIAEK 68 Query: 60 PRYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 P Y MLNKP GY+ + DP PT++ + L GRLD+DTTGL+ T DGQ + Sbjct: 69 PVYLMLNKPAGYLTTMKDPQGRPTIVDMVPTDTYPGLFPVGRLDMDTTGLLFFTTDGQMA 128 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT-------- 170 + P H K Y+ + ++ + +G++L + PA +E+I+ Sbjct: 129 QELLHPSKHVWKHYVAHVVGTPTEEQLNRLREGIELEDGP--AAPAEVEIISDDVKMKNL 186 Query: 171 --------------PTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAP 216 V +TI EGR HQVK+M A+ + V+ LHR+ G + L + Sbjct: 187 LAPQGLGKTGGGEPNALVSVTIREGRKHQVKKMLLAIHHRVLALHRDTFGPLHL-TRVKE 245 Query: 217 GEYRPLTEEEIASV 230 GE+R LTEEE+ ++ Sbjct: 246 GEWRLLTEEEVTAL 259 >UniRef50_A6DMJ6 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DMJ6_9BACT Length = 239 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 104/230 (45%), Positives = 139/230 (60%), Gaps = 3/230 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLL-PEHDVAYDGNPLAQQHG 59 +RLDK IA+ ++R+ A R ++ V V+ + + V +DG L + Sbjct: 8 IRLDKMIAKCTDLTRSEATRALKNGFVKVNDIPQKVGKSTIDLANDVVTFDGEVLEYRE- 66 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWS 118 YFMLNKP+GYVC+ D TVL L +A + + GRLDIDTTGLV++TDDG W+ Sbjct: 67 TIYFMLNKPKGYVCAAKDERLKTVLDLLPPALASREPFSCGRLDIDTTGLVILTDDGTWA 126 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 H ITSP+ CEK+YLV S ++D+ +GV L + +T PA +E I RL I Sbjct: 127 HGITSPKRKCEKSYLVGSVSELSDEDMRNLEQGVYLDGDDKITAPAKIEKIDEKTYRLKI 186 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 +EGRYHQVKRMF AV N V LHRE+IGG++LD DL G +R LT EE+ Sbjct: 187 TEGRYHQVKRMFEAVDNMVKSLHREQIGGLSLDDDLDEGNWRDLTAEEVK 236 >UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C4P7_9PLAN Length = 352 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 124/235 (52%), Gaps = 9/235 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +RL KF+A SR I RV+VDG+++ K+ PE + DG + Q Sbjct: 23 IRLQKFLAATGLGSRRHCEEYIETGRVSVDGDVITELGAKIDPETQFIEVDGERVRLQ-P 81 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 RY++LNKP G++C+ +DP + L +L GRLD ++ GL+L+T+DG+ + Sbjct: 82 RRYYLLNKPSGFLCTNNDPAGRRRVVDLFPNDGQRLFTVGRLDENSEGLILVTNDGELAQ 141 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ----VR 175 R+ PR+ +TY V + + ++ KGV+ + + + + L+ + + Sbjct: 142 RLAHPRYRVARTYHVQVVGNPPREKLDELRKGVRFK--EGVFRVSGLKYLKKQGKSAFLE 199 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 LT+ EG+ +++RM A +G+ V++L R R G + L L GE R L++ E+ + Sbjct: 200 LTLHEGQNREIRRMMARIGHKVIQLVRIRFGPLNL-GKLKTGESRRLSDTELKKL 253 >UniRef50_B9XS61 Pseudouridine synthase n=1 Tax=bacterium Ellin514 RepID=B9XS61_9BACT Length = 235 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 87/234 (37%), Positives = 129/234 (55%), Gaps = 5/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +RL KF+A+ SR + R I G RV+V+G+ VR K+ P HD +A DG PL Sbjct: 2 VRLQKFLAEAGVASRRASERIILGGRVSVNGDTVRELGTKVDPIHDSIALDGAPLRL-KR 60 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y LNKP+GYVCS D V+ L L++ GRLD D+ GL+ +T+DG++S Sbjct: 61 KLYVALNKPRGYVCSRKDDRKRKVIGDLLPAEWDNLYSVGRLDSDSEGLIFLTNDGEFSL 120 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ--VRLT 177 +T PR+ K YL T+E V + ++F G+ EK A + + V L Sbjct: 121 HLTHPRYRVLKKYLATVEGRVEQEMLQRFKHGIVHEGEKLKVDRARTLSVQNSTSLVELE 180 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 ++EG+ +++R+F + G V L R +IG I L +L G++R LTE EI S++ Sbjct: 181 LTEGKNREIRRLFESQGLTVSRLVRMQIGKIKL-GELRSGKWRMLTEAEIKSLL 233 >UniRef50_B1KQS3 Pseudouridine synthase n=20 Tax=Gammaproteobacteria RepID=B1KQS3_SHEWM Length = 239 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 100/238 (42%), Positives = 144/238 (60%), Gaps = 10/238 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF+ + ++R A I +V V+GE V + + ++ + + +G Sbjct: 1 MRLDKFLCKSTQLTRHEACELILAGKVLVNGESVVSPSAQVHENNHIRLEGGQRLTARAS 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 RY ML+KP + S D DHP+V F++ +LH AGRLD DTTGL+L+TDDG+WS Sbjct: 61 RYIMLHKPADTLSSNVDGDHPSVFNFINLEHTSELHIAGRLDADTTGLLLITDDGRWSFN 120 Query: 121 ITSPRHHCEKTYLV--------TLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT 172 + +P++HCEK Y V + + + +F +G+ L E+ LT PA LE ++P Sbjct: 121 VFNPKYHCEKVYRVYLRDSIEGEIAGEIDAELKARFKQGLDLQGEQALTLPAKLEFVSPK 180 Query: 173 QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +V LTI+EGRYHQ+KRMFA VGN V LHRE++G I L D+ G++R LT EEI S+ Sbjct: 181 EVLLTITEGRYHQMKRMFARVGNRVNALHREQVGKIKL--DMPVGQWRYLTREEIDSI 236 >UniRef50_C8P160 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P160_ERYRH Length = 262 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 125/234 (53%), Gaps = 8/234 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+K+I+ SR A R I V +DG ++LP V +GN + Sbjct: 26 LRLNKYISDSGYCSRRQADRFIAEGVVAIDGVTAT-VGQQVLPGQRVTVEGNHVTIDDEK 84 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y LNKP+G C+TD + F++ P + GRLD D++GL+L+T+DG ++ Sbjct: 85 VYIALNKPRGITCTTDGAIEGNISDFMNYP--KMIFPIGRLDKDSSGLILLTNDGDIVNK 142 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKD----LTKPAVLEVITPTQVRL 176 I + +K Y+V++ + +D + +KGV+++N++ +T P+ +E + P R+ Sbjct: 143 ILREEYGHDKEYIVSVNKTIDEDFITKMSKGVEIYNQQTHRMQVTNPSDVEQVAPKTFRI 202 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +++G Q++RM A+G V L+R RI I L DL GE+R L+ E+ + Sbjct: 203 VLNQGLNRQIRRMTKALGFKVTTLNRVRIMNINL-GDLKVGEWRYLSVHELEEM 255 >UniRef50_C5EVC9 Pseudouridine synthase n=6 Tax=Clostridiales RepID=C5EVC9_9FIRM Length = 294 Score = 257 bits (659), Expect = 1e-67, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 126/237 (53%), Gaps = 12/237 (5%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPL-------A 55 L+K+++Q SR A R I +V VDG K+ P V DG P+ + Sbjct: 36 LNKWLSQMGVCSRREADRLIEAGKVWVDGSPA-AMGQKVKPGQKVVCDGVPVNGGSGADS 94 Query: 56 QQHGPRYFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDD 114 ++ P ++NKP+G VC+T D D ++ +LD P +++ GRLD D+ GL+LMT+ Sbjct: 95 RKPKPVLLVVNKPRGIVCTTSDKDRAMNIVEYLDYP--ERIYPVGRLDKDSEGLLLMTNQ 152 Query: 115 GQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQV 174 G ++I + EK Y+VT++ P+ DD ++ AKG+ L + +T+P ++ + Sbjct: 153 GDLVNKIMRSGNAHEKEYIVTVDRPLTDDAMDRMAKGIYLRELETVTRPCKVKRVDGKTF 212 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 + +++G Q++RM A G HV L R RI I LD L G R + +EE ++ Sbjct: 213 SIILTQGLNRQIRRMCEACGCHVERLVRVRIMNIRLDG-LETGASREVGQEEYRELM 268 >UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9GX03_SORC5 Length = 399 Score = 257 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 115/229 (50%), Gaps = 5/229 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHGP 60 RL K IA+ SR + I RV V+G +V K + + DG L P Sbjct: 4 RLQKIIARAGVASRRASEELILAGRVRVNGRVVTELGLKADRQKDRIEVDGKRLVS-EAP 62 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y L+KP+ V + DP+ + +L+ GRLD T+G++LMT+DG +++ Sbjct: 63 VYVALHKPRNVVSTLRDPEGRPTVADHVRGTGARLYPVGRLDFATSGILLMTNDGDFANA 122 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRLTI 178 + PR KTY++ ++ ++DD + +G++L + L A L T + +T+ Sbjct: 123 LLHPRGGVPKTYVLKVQGVMSDDDLTPWREGIRLEDGVTLPAEARLLRHEGDKTWLEVTL 182 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 EGR Q++RM A G V+ L R G++ + L PGE+R LT +E+ Sbjct: 183 REGRNQQIRRMGEATGWPVMRLARTTFAGVSSEG-LRPGEWRALTVDEL 230 >UniRef50_C9LMF3 Ribosomal small subunit pseudouridine synthase A n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMF3_9FIRM Length = 277 Score = 257 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 87/256 (33%), Positives = 132/256 (51%), Gaps = 28/256 (10%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF++ +R R+IR V V+GE + + F + ++ + G P+ Sbjct: 18 MRLDKFLSDMNMGTRTELKRDIRKGAVQVNGEKITDPGFMVNENDEIIFAGEPV-PYFRY 76 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y+MLNKP G + +T+D TVL F E L GRLD DT GL+L+T+DG + HR Sbjct: 77 EYYMLNKPAGVITATEDRYQKTVLDFFGERRRKDLSPVGRLDKDTVGLLLVTNDGGFHHR 136 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP--------- 171 + SP+ H +K Y ++ V + E+F KG+ + +E PA L + Sbjct: 137 LLSPKKHIDKEYYARIDGRVDEADREKFEKGIYV-DEIFTALPAKLMIDGYRENALESDF 195 Query: 172 -----------------TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADL 214 +++R+ + EG++HQ+KRMF A+G V+ L R RIG + LD L Sbjct: 196 MDLANSRAPKSALENGVSEIRVVVQEGKFHQIKRMFHALGKEVIYLKRIRIGSVVLDPTL 255 Query: 215 APGEYRPLTEEEIASV 230 G YR LT E+A++ Sbjct: 256 EEGTYRRLTAGEVAAL 271 >UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q01SF5_SOLUE Length = 249 Score = 257 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 122/233 (52%), Gaps = 7/233 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 RL K ++Q SR A + ++ RVTV+G ++ K + D + DG L Sbjct: 5 RLQKILSQAGVSSRRQAEKLMQEGRVTVNGSVITELGSKADLDRDHIKVDGRLLKAPKHQ 64 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y LNKP+G V + DP+ + L V +++ GRLD + GL+L+T+DG+ ++ Sbjct: 65 IYIALNKPKGTVTTVHDPEGRETVMDLLHRVKERVYPVGRLDYHSEGLLLLTNDGELANS 124 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT---QVRLT 177 I S H EKTY+V + + + E+F GV L + T PA L++++ + Sbjct: 125 IMSAATHLEKTYVVKVTGTLTAEQEEKFRTGVPLSGRR--TLPAGLKLLSRAENPWYEVK 182 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 ++EGR +Q++ MF G V +L R RIG I L L G +R L EE++A + Sbjct: 183 LTEGRNNQIRMMFRHFGKLVEKLKRVRIGPIEL-GTLKTGAFRYLDEEDVAKL 234 >UniRef50_D2RB61 Pseudouridylate synthase n=2 Tax=Gardnerella vaginalis RepID=D2RB61_GARVA Length = 284 Score = 257 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 118/234 (50%), Gaps = 5/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +RL K +A+ SR I RV VD E+V ++ P+ V DG+ + Sbjct: 46 IRLQKLLAEAGFGSRRKCEEIILDGRVEVDDELVTTLGTRVDPKRQKVRVDGSRVKFNTK 105 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 L+KP+ + + DDP L + ++ GRLD D+ GL+LMT+DG+ S Sbjct: 106 LVTLALHKPKRVLSAMDDPKGRFTLRDIVGDKYERIFHMGRLDYDSEGLILMTNDGELSQ 165 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQF-AKGVQLHNE-KDLTKPAVLEVI-TPTQVRL 176 + P++ EKTY+ T+E + + ++GV L + L + A+++ T V++ Sbjct: 166 HVMHPKYEVEKTYIATVEGKINGMVCRRLVSQGVNLEDGWIKLDRCAIIDQNHDTTMVKI 225 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + G+ V+R+F AVG V L R +IG I L DL G YR L++ E+ S+ Sbjct: 226 VLHSGKNRIVRRIFGAVGFPVKRLVRTQIGPIKL-GDLKAGSYRVLSQTEVRSL 278 >UniRef50_B0RHF4 Pseudouridine synthase n=3 Tax=Actinobacteria (class) RepID=B0RHF4_CLAMS Length = 291 Score = 257 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 109/234 (46%), Gaps = 4/234 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL K +A SR + I RVTV+GE V ++ P+ +VA D + Sbjct: 25 VRLQKVMAAAGVASRRVCEDMIAAGRVTVNGETVTEPGRRIDPDVDEVAVDDQAVQLDTS 84 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 RY MLNKP G S D L E +L GRLD +T+GL+++T+DG +H Sbjct: 85 KRYLMLNKPVGIYSSLRDERGRPDLREFTEEFEERLFNVGRLDAETSGLLILTNDGDLAH 144 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRLT 177 + P KTY+ + V T ++ +GV L + A + T V +T Sbjct: 145 VLAHPSFGVLKTYIAKVTGRVTPQTIQRLTQGVDLEDGPIQADRARILSGGGDQTLVEIT 204 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 + GR V+RM VG+ V EL R + G + L L G R LT +E+ ++ Sbjct: 205 LHSGRNRIVRRMLDEVGHPVEELVRRQFGPLHL-GSLGVGRVRDLTSDELGQLL 257 >UniRef50_C9RK28 Pseudouridine synthase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RK28_FIBSS Length = 243 Score = 257 bits (658), Expect = 2e-67, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 112/238 (47%), Gaps = 9/238 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 MR++K+I+ SR A + RV V+GE + + ++ + V DG L Sbjct: 1 MRINKYISLSGFASRRAADELVADGRVQVNGETISDLGHQVDETKDQVTVDGKLLKLPTN 60 Query: 60 PRY--FMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 + M +KP G VC+ DDP +Y P GRLD+ + GL+L TDDG+ Sbjct: 61 KKTKVIMFHKPAGCVCTKDDPQGRRTVYDYLPPGYHNFKYVGRLDLQSRGLLLFTDDGEL 120 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQV--- 174 +R+T P ++Y V P+++ A++ GV + + +D + T + Sbjct: 121 LYRLTHPSFEVPRSYYVWTTRPLSESAAQRLVDGVDIRDPEDPDAQEEIAFATDVYLENG 180 Query: 175 --RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 L + EG+ +++RM A+G + +L R I L DL GE+R LT E+ + Sbjct: 181 FAELVLIEGKNREIRRMMRAIGYEIRDLKRVSYCQIQL-GDLPAGEFRELTPNELNKL 237 >UniRef50_B0VG32 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VG32_9BACT Length = 279 Score = 257 bits (658), Expect = 2e-67, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 4/234 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +RL++++A SR I R+ V+G +V++ + +++P D V DG P+ Sbjct: 40 LRLNRYLADCGLGSRRKVEEFITTGRIAVNGNLVQDLSRQIIPGKDKVTLDGKPIQPAKE 99 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+GYV S +D +Y L P +L AGRLD ++ GL+ T+D + Sbjct: 100 KFYLILNKPRGYVVSQNDELGRKTVYSLLPPKGKQLAYAGRLDKESEGLLFFTNDTALIN 159 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT--QVRLT 177 +T P++ EK Y V + P+ + KGV++ K L ++ +++ Sbjct: 160 LLTHPKNKVEKVYRVDINRPLNNMELNMLRKGVEIEGGKTLPAGIFVKSKNANGMTLKIV 219 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 I+EGR Q+++M AVG V L R + G + L DL G +R L E+ +++ Sbjct: 220 ITEGRKRQIRQMIEAVGAKVTYLKRLQFGPLKL-KDLPVGRWRLLEPGEVKALL 272 >UniRef50_C7I043 Pseudouridine synthase n=4 Tax=Proteobacteria RepID=C7I043_THIIN Length = 562 Score = 257 bits (658), Expect = 2e-67, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 109/234 (46%), Gaps = 7/234 (2%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP-- 60 L K +AQ SR I RV+V+GE + ++LP + +G + ++ P Sbjct: 174 LHKVLAQSGVGSRREMEDLILAGRVSVNGEPA-HLGQRILPTDQIRVNGKIIKRRLRPAQ 232 Query: 61 -RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 R +KP G V S DP+ PTV L + K A GRLDI+T GL+L T G + Sbjct: 233 ARVLAYHKPTGEVVSFKDPEGRPTVFQHLPKLQGAKWTAVGRLDINTEGLLLFTTSGDLA 292 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAV--LEVITPTQVRL 176 +R+ P + E+ Y V + + ++ +GVQL + R+ Sbjct: 293 NRLMHPSYGAEREYAVRVLGELDAAARDELLEGVQLGDGPARFLSLEEAGGEGANRWWRV 352 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 ISEGR +V+RMF AVG V L R R + L A L G++ L + + ++ Sbjct: 353 VISEGRNREVRRMFEAVGLTVSRLIRVRYASVVLPAGLRRGDFVELDKSLVQAL 406 >UniRef50_UPI0001C37AA4 16s pseudouridylate synthase n=2 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37AA4 Length = 255 Score = 257 bits (658), Expect = 2e-67, Method: Composition-based stats. Identities = 94/234 (40%), Positives = 129/234 (55%), Gaps = 6/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RLDKFI+++ +R+ VTV+G V+ + K+ DV GN ++ Sbjct: 4 IRLDKFISERTEYTRSQIKSLCAKGSVTVNGSPVKRSDTKIDTGADDVTVCGNAISS-ER 62 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWS 118 RY +LNKP+GYV STDD D TV+ + + K L AGRLD D+TG +L+TDDG + Sbjct: 63 FRYILLNKPKGYVSSTDDKDGETVIKLVPPEMRSKGLFPAGRLDKDSTGALLITDDGALA 122 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP--TQVRL 176 HRI SP +H K Y L P + E+FAKG+ L N + P ++ + Sbjct: 123 HRICSPNNHISKIYAAELSRPFEQEYVEKFAKGIVLANGEA-CSPCKVQKAENADNLAFV 181 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EG YHQVKRMFAAVGNHV L R IGG+ L DL G+ L ++I + Sbjct: 182 ELHEGMYHQVKRMFAAVGNHVENLKRISIGGLILPKDLPLGKCMYLLPKDIEQM 235 >UniRef50_C5WHE9 Pseudouridine synthase n=3 Tax=Lactobacillales RepID=C5WHE9_STRDG Length = 245 Score = 257 bits (657), Expect = 3e-67, Method: Composition-based stats. Identities = 89/238 (37%), Positives = 132/238 (55%), Gaps = 11/238 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDV-AYDGNPLAQQHG 59 MRLDKF+ + SR+ ++ + V+ E+ + ++ DV Y G PL Sbjct: 3 MRLDKFLVETGVGSRSQVKSLLKKKAILVNQEVETSPKVQINEHKDVVTYLGKPLT-YEA 61 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWS 118 Y++LNKP G++ +T D TV+ LDE K + GRLD DT GL+L+T++GQ + Sbjct: 62 FVYYILNKPAGFLSATKDRAQATVIDLLDETARQKDVFPVGRLDKDTRGLLLLTNNGQLA 121 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ----- 173 H + SP+ H K YL + + D + FAKG+ L + + PA LEV+ Sbjct: 122 HDLLSPKKHVTKEYLAKVAGIMTDADKDDFAKGISLKDHQ--CLPAKLEVLDKDLSQETC 179 Query: 174 -VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 V +TI EG++HQVKRM AA G V+EL R +G + LD LA G++R LT +E+ S+ Sbjct: 180 VVSITIQEGKFHQVKRMVAACGKEVLELQRLSMGPLRLDPGLAEGDFRRLTSDELQSL 237 >UniRef50_A6WK95 Pseudouridine synthase n=12 Tax=Gammaproteobacteria RepID=A6WK95_SHEB8 Length = 256 Score = 256 bits (656), Expect = 4e-67, Method: Composition-based stats. Identities = 93/229 (40%), Positives = 133/229 (58%), Gaps = 1/229 (0%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RLD+++ QL R + RV VDG IV++ ++ + D + Q + P Sbjct: 28 RLDRYLCTQLHTHRKAVRELLLSGRVRVDGLIVKDMDRQVDEFSHIQLD-EHILQANAPV 86 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y ML+KP G V +T D H TV+ LD +LH AGRLD++++GL+L+T+D +WS + Sbjct: 87 YVMLHKPIGVVSATKDIQHKTVIDLLDCEARDELHIAGRLDLNSSGLLLLTNDSRWSDAL 146 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEG 181 SP H +K Y VTL +P+ ++ FA+G+ E T+PA L ++ +T+ EG Sbjct: 147 MSPTHKVDKVYRVTLANPITEEYIAAFAEGMYFGFEDITTQPAKLVILADNVAEVTLHEG 206 Query: 182 RYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +YHQ+KRMF N VV LHR IG I LD LAPGE R LT E+AS+ Sbjct: 207 KYHQIKRMFGRFRNPVVGLHRLSIGDIVLDEKLAPGESRALTAAEVASI 255 >UniRef50_Q1J642 Pseudouridine synthase n=51 Tax=Streptococcus RepID=Q1J642_STRPF Length = 244 Score = 256 bits (656), Expect = 4e-67, Method: Composition-based stats. Identities = 88/238 (36%), Positives = 133/238 (55%), Gaps = 11/238 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 MRLDKF+ +R+ ++ + V+ ++ +A + D V Y G PL Sbjct: 2 MRLDKFLVATGVGTRSQVKLLLKKKAIFVNQKVETSAKAHIDEYKDLVTYQGTPLV-YES 60 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWS 118 Y++LNKP GYV +T D TV+ LD+ K + GRLD DT GL+L+T++GQ + Sbjct: 61 FVYYLLNKPSGYVSATQDRQQATVMELLDDTARQKTVFPVGRLDKDTRGLLLLTNNGQLA 120 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP------T 172 H + SP+ H K YL + + + + FA+G+ L + + PA LEV+ + Sbjct: 121 HDLLSPKKHVTKEYLAKVAGIMTEADKDYFARGISLKDHQ--CLPAHLEVLASDLQQQTS 178 Query: 173 QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 V++TI EG++HQVKRM AA G V++L R +G + LD LA GE+R LT EE+ S+ Sbjct: 179 LVKITIQEGKFHQVKRMVAACGKEVLDLQRLSMGPLKLDPSLAEGEFRRLTPEELQSL 236 >UniRef50_B0S1L0 Pseudouridine synthase n=2 Tax=Finegoldia magna RepID=B0S1L0_FINM2 Length = 242 Score = 256 bits (654), Expect = 6e-67, Method: Composition-based stats. Identities = 68/233 (29%), Positives = 123/233 (52%), Gaps = 9/233 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++KFIAQ SR A I+ ++V V+G I+ + ++++ V +G + + Sbjct: 1 MRINKFIAQSGYCSRRNADELIKNSKVYVNGTILLDLSYQVNDTDIVEVEGKKINLKEDK 60 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +NKP GY + D V+ + +++ GRLD D+ GL+++T+DG++++ Sbjct: 61 IYIAINKPIGYASTVKDKFADKKVVDLIKSDT--RVYPVGRLDKDSHGLLILTNDGEFTY 118 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TPTQVR 175 +T P+ +K Y V ++ +Q G+ L K K + +E I T+ R Sbjct: 119 ELTHPKFEHKKIYEVLVKGKPNKTEIKQLKDGILLDGYKL--KKSKIEFIENVKNDTKYR 176 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 +TI EGR Q++RMF + + V++L R +IG ++ L GEY+ L +++ Sbjct: 177 VTIFEGRNRQIRRMFDFINHPVLDLKRVQIGNYKMENSLKSGEYKLLKSKDLD 229 >UniRef50_O32068 Uncharacterized RNA pseudouridine synthase ytzG n=68 Tax=Bacteria RepID=YTZG_BACSU Length = 239 Score = 255 bits (653), Expect = 8e-67, Method: Composition-based stats. Identities = 90/226 (39%), Positives = 129/226 (57%), Gaps = 8/226 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 MRLDK +A SR ++ V +DG+ ++ + P+ +V G P+ + Sbjct: 1 MRLDKLLANSGYGSRKEVKAVVKAGAVMIDGKPAKDVKEHVDPDTQEVTVYGEPVDYRE- 59 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFL-DEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y M+NKPQG + +T+D TV+ L E + ++ AGRLD DT G +L+T+DGQ + Sbjct: 60 FIYLMMNKPQGVLSATEDSRQQTVVDLLTPEEMRFEPFPAGRLDKDTEGFLLLTNDGQLA 119 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT----PTQV 174 HR+ SP+ H KTY V L+S ++ + GV + TKPA E+ T T + Sbjct: 120 HRLLSPKKHVPKTYEVHLKSQISREDISDLETGVYIEGG-YKTKPAKAEIKTNDSGNTVI 178 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYR 220 LTI+EG+YHQVK+M AVGN VV L R +G ++LD LAPGEYR Sbjct: 179 YLTITEGKYHQVKQMAKAVGNEVVYLKRLSMGRVSLDPALAPGEYR 224 >UniRef50_C3X1E1 Pseudouridine synthase n=2 Tax=Oxalobacter formigenes RepID=C3X1E1_OXAFO Length = 510 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 109/235 (46%), Gaps = 7/235 (2%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG--- 59 L K +A SR I RV+V+GE + ++LP V +G + ++ Sbjct: 176 LHKVLADAGLGSRRDMEELIVAGRVSVNGEPA-HIGQRILPTDQVRLNGKLIQRKIAKSL 234 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 PR +KP G + S DDP+ P+V L K A GRLD +T GL+L T+ G + Sbjct: 235 PRVLTYHKPAGEIVSRDDPEKRPSVFDRLPLLKNSKWLAVGRLDFNTEGLLLFTNSGDLA 294 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT--PTQVRL 176 +R+ PR++ E+ Y V + + ++ GV L + V R+ Sbjct: 295 NRLMHPRYNIEREYAVRTLGELEEGMRQKLLAGVDLGDGIGQFSKIVDGGGEGVNKWYRV 354 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 TI EGR +V+RMF AVG V L R R G + L L G + L E + +++ Sbjct: 355 TIGEGRNREVRRMFEAVGLTVSRLIRTRYGAVVLSQSLKRGRWDELEENAVRNLL 409 >UniRef50_C5CXG1 Pseudouridine synthase n=4 Tax=Comamonadaceae RepID=C5CXG1_VARPS Length = 604 Score = 254 bits (651), Expect = 1e-66, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 111/234 (47%), Gaps = 7/234 (2%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQ---QHG 59 L K +AQ SR I R++V+ E + ++ V +G P+ Sbjct: 200 LHKVLAQAGLGSRLEMEALILQGRISVNNEPA-HIGQRIQYGDQVKINGKPIRYRIAPPP 258 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 PR +KP G V + DDP PTV L K + GRLD++T GL+L + G + Sbjct: 259 PRVIAYHKPVGEVVTHDDPQNRPTVFRKLPRLQQGKWQSVGRLDLNTEGLLLFSSSGDLA 318 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNE--KDLTKPAVLEVITPTQVRL 176 +++ PR E+ Y V + + + ++ +GV+L + + T + R+ Sbjct: 319 NQLMHPRFGLEREYAVRVLGALNAEEKKKLLEGVRLDDGMAQFGTIEEGGGEGSNHWYRV 378 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 TISEGR +V+R+F +VG+ V L R R G + L L G + L E +I+++ Sbjct: 379 TISEGRNREVRRLFESVGHAVSRLIRIRYGAMVLPRGLKRGAWMELDERDISAL 432 >UniRef50_A1WE21 Pseudouridine synthase n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WE21_VEREI Length = 520 Score = 254 bits (651), Expect = 1e-66, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 111/232 (47%), Gaps = 7/232 (3%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP-- 60 L K +AQ SR + I R++V+ E + ++ V +G P+ + P Sbjct: 173 LHKVLAQAGLGSRLEMEQLILEGRISVNNEPA-HIGQRIQFGDQVKVNGKPIRYRIDPPP 231 Query: 61 -RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 R +KP G V S DDP PTV L V K + GRLD++T GL+L+T G+ + Sbjct: 232 ARVIAYHKPVGEVVSHDDPHNRPTVFRRLPRLVQGKWQSVGRLDLNTEGLLLLTSSGELA 291 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNE--KDLTKPAVLEVITPTQVRL 176 +++ PR E+ Y V + ++++ ++ GV+L + T R+ Sbjct: 292 NQLMHPRFGLEREYAVRVLGALSNEEKQKLLDGVRLDDGIASFGTIEDGGGEGANCWYRV 351 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 TI+EGR +V+RM AVG+ V L R R G + L L G + L E +I Sbjct: 352 TIAEGRNREVRRMLEAVGHAVSRLIRIRYGAMVLPRGLKRGTWLELDERDIR 403 >UniRef50_A1K3P0 Pseudouridylate synthase n=3 Tax=Betaproteobacteria RepID=A1K3P0_AZOSB Length = 500 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 79/241 (32%), Positives = 116/241 (48%), Gaps = 17/241 (7%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL K +A + SR A I V VDG V ++ P+ V Q Sbjct: 262 VRLSKVMADRGICSRREADELIERGWVFVDGRRVSELGTRIDPDARVVLAPEAKKAQAQR 321 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFL------DEPVAWKLH--------AAGRLDIDTT 106 +L+KP GYV +P + + + D VA + H AGRLDID+T Sbjct: 322 VTILLHKPVGYVSGQPEPGYEPAVTLIGGDNQFDRDVAQRFHPSQLKGLAPAGRLDIDST 381 Query: 107 GLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL 166 GL+++T DG+ + ++ EK YLV +E + DD G+ L ++ +PA + Sbjct: 382 GLLVLTQDGRIARQLIGDDSKVEKEYLVRVEGELVDDGLALLNHGLSLDDKPL--RPAKV 439 Query: 167 EVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 E I Q+R + EGR Q++RM VG VV L R RIG + L DL GE+R L ++E Sbjct: 440 EWINEDQLRFVLKEGRKRQIRRMCELVGLRVVGLKRVRIGRVKL-GDLPLGEWRYLRDDE 498 Query: 227 I 227 + Sbjct: 499 V 499 >UniRef50_B8DUD9 Pseudouridine synthase n=8 Tax=Bifidobacterium RepID=B8DUD9_BIFA0 Length = 257 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 116/234 (49%), Gaps = 5/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL K +AQ SR I RV VDGE+V ++ P+ V DG+ + Sbjct: 19 IRLQKLLAQAGFGSRRKCEEMITDGRVEVDGELVTELGTRVDPKRQQVRVDGSRIRLNPR 78 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 LNKP+ + + DDP L + ++ GRLD D+ GL+LMT+DG+ S Sbjct: 79 HITLALNKPRKVLSTMDDPKGRYTLRDIVGDKYERIFHMGRLDYDSEGLILMTNDGELSQ 138 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQF-AKGVQLHNE--KDLTKPAVLEVITPTQVRL 176 + P++ EKTY+ TLE ++ + GVQL + K + T V++ Sbjct: 139 HVMHPKYEVEKTYIATLEGHMSGTVCRRLVRTGVQLDDGWIKLDHCSIIDSNRDQTIVKV 198 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + GR V+R+F A+G V L R +IG I L D+ G YR L+++E+ ++ Sbjct: 199 VLHSGRNRIVRRIFGAIGFPVKRLVRTQIGPIKL-GDIKSGSYRVLSQDEVRAL 251 >UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1DTU8_SULAA Length = 247 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 71/238 (29%), Positives = 129/238 (54%), Gaps = 11/238 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDV-AYDGNPLAQQHGP 60 RL+K+IA+ SR A I +V V+G+ V+N K+ P+ DV +G + Sbjct: 3 RLNKYIAKSGICSRRKADELILEGKVKVNGKTVKNLGLKIDPKKDVVEVEGKIVKPTEKK 62 Query: 61 RYFMLNKPQGYVCS--TDDPDHPTVLYFLDE-PVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 Y + KP GY+ + D T+ FL+E + +KL GRLD ++ GL+++T+DG++ Sbjct: 63 IYLAIYKPVGYLSAVGKDRFGRKTLTDFLNELKIPYKLFPVGRLDYNSEGLLILTNDGEF 122 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TPTQ 173 ++++ PR+ +K Y V + V+ +T ++ +G L + KP ++++ T Sbjct: 123 ANKVAHPRNEIKKVYKVKVAGEVSQETLKKMEEGTILEDG--FFKPDKIKMLKREEDGTW 180 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 + + I G+ ++R + G+ V L R +IG I + +L P +YR L+E+EI S++ Sbjct: 181 LLVEIHSGKKRIIRRFMDSFGHRVKRLIRVKIGSIDI-GNLKPFDYRYLSEKEIRSIL 237 >UniRef50_Q1IJT7 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJT7_ACIBL Length = 680 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 78/255 (30%), Positives = 123/255 (48%), Gaps = 29/255 (11%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL K IA SR A + RVTV+GE+ K PE D+ DG PL + Sbjct: 5 RLQKIIAAAGMASRRKAEELVTAGRVTVNGEVKNELGSKADPETDDIRVDGKPL-KAEQL 63 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +L+KP+GYV + DP+ + L + + +L+ GRLD + GL+L+T+DG+ + + Sbjct: 64 VYVLLHKPKGYVTTVSDPEGRETVMDLVKGIPARLYPVGRLDYLSEGLLLLTNDGEMAAK 123 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDL-------------------- 160 +T H K YLV + ++ ++ GVQL E+ Sbjct: 124 LTHASTHVPKKYLVKVSGEPTEEQIQELRNGVQLPPEQGHIHADPREGGRFGGEKRRSTA 183 Query: 161 --TKPAVLEVITPT---QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLA 215 T P +E+ +T++EGR Q++RMF +G+HV ++ R G + L D+ Sbjct: 184 VKTAPCKIELTREGDNPWYEVTLNEGRNRQIRRMFDFIGHHVEKIKRVEYGPLKL--DVE 241 Query: 216 PGEYRPLTEEEIASV 230 GE+R L E+A + Sbjct: 242 NGEFRLLNPAEVARL 256 >UniRef50_B2TQQ1 Pseudouridine synthase n=8 Tax=Clostridium RepID=B2TQQ1_CLOBB Length = 264 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 91/254 (35%), Positives = 131/254 (51%), Gaps = 26/254 (10%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 MRLDKF+A+ R I I+ V V+GEI+ + + + DV Y + G Sbjct: 1 MRLDKFLAESAVGRRKIVRTYIKDGMVKVNGEIITEPSIDINEKLDDVEYLEKKVVH-TG 59 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y+M NKP G + +T D H TV + DE + + GRLD DT GL+L+T+DG++ H Sbjct: 60 KVYYMFNKPSGCITATKDNIHRTVFDYFDEDMNG-VFHVGRLDKDTEGLLLLTNDGEFEH 118 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQV----- 174 ++ P H EKTY + D+ +Q +GV + + + LTKPA +++ Sbjct: 119 KVMHPEKHVEKTYFFWALGSLDDEDKKQLQEGVFIGSNEALTKPAKIDIHKSGSYIEFKE 178 Query: 175 ------------------RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAP 216 LTISEG+ HQVKRM AVG +V+ L R IGG+ LD L Sbjct: 179 EIPINSLKNKDHQPVVSGYLTISEGQKHQVKRMLKAVGCYVIYLKRISIGGLKLDESLKM 238 Query: 217 GEYRPLTEEEIASV 230 G+YR LT++EI + Sbjct: 239 GDYRDLTKKEIKRI 252 >UniRef50_B0MSS4 Pseudouridine synthase n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MSS4_9BACT Length = 451 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 122/231 (52%), Gaps = 3/231 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL++FIAQ SR A I+ VTV+G +V K+ P +V ++ + + Sbjct: 217 IRLNRFIAQSGICSRREADDFIQAGLVTVNGVVVTTLGTKVQPTDEVKFNDSRVEG-EKK 275 Query: 61 RYFMLNKPQGYVCSTDDPDH-PTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+GYV S DDP TV+ + + +++ GRLD ++ GL+L T+DG + Sbjct: 276 VYLVLNKPKGYVTSLDDPHADKTVMELVKDACTERIYPVGRLDKNSVGLLLFTNDGDLTR 335 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 ++T P +K Y V+L+ P+ EQ A+G+ L + + T+V + I Sbjct: 336 QLTHPSFQKKKIYQVSLDKPLTKADMEQIAQGITLEDGEIYADEIAYVKEDKTEVGIEIH 395 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+R+F +G V +L R G++ +L G++R LT EE+ + Sbjct: 396 SGRNRIVRRIFEHLGYAVKKLDRVYYAGLS-KKNLKRGQWRFLTREEVQRL 445 >UniRef50_C0QWY7 Pseudouridine synthase n=2 Tax=Brachyspira RepID=C0QWY7_BRAHW Length = 229 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 123/231 (53%), Gaps = 6/231 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL+K+IA SR A R I+ V V+G I N A ++ + + + Sbjct: 1 MRLNKYIASLNLASRREADRLIQNGNVKVNGIINTNPATQVDENDKIEC--SIEQYKENK 58 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y LNKP+GYV S++ + + + + ++ GRLD D++GL+L T+DG ++ + Sbjct: 59 IYIKLNKPRGYVVSSNKNEGKPIYNLIKKDFD-NIYPVGRLDKDSSGLILFTNDGVFAKQ 117 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 I +CEK Y V ++ + D ++ G+ L +K KPA ++ + + ++E Sbjct: 118 IIGENTNCEKEYYVRVDDNIPDGALQKLEYGISLDGQKL--KPAKVKRVNKNSFHIILTE 175 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 G+ Q++RM VG V+ L R RI GI L+ DL G ++ LT+EEI S++ Sbjct: 176 GKNRQIRRMCQKVGFEVIILKRLRISGILLE-DLKEGTFKSLTKEEIESIL 225 >UniRef50_Q1GFA6 Pseudouridine synthase n=3 Tax=Rhodobacteraceae RepID=Q1GFA6_SILST Length = 422 Score = 253 bits (648), Expect = 3e-66, Method: Composition-based stats. Identities = 61/226 (26%), Positives = 98/226 (43%), Gaps = 3/226 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +++ SR A R I RV V+G+++ + A + + DGNPL + PR Sbjct: 63 RIAKVLSRAGVASRREAERMIAEGRVAVNGKVIDSPALNVTNLDRIVVDGNPLPEAEAPR 122 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 ++ KP G V +T D ++ ++ GRLD+++ GL+L+T+DG ++ Sbjct: 123 LWLYYKPNGLVTTTSDEKGRKTIFDALPEDLPRVMTVGRLDLNSEGLLLLTNDGGVKRQL 182 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI--S 179 P + Y V + D + KGV + E+ L+ LTI Sbjct: 183 ELPSTGWLRRYRVRINGRPQDHEFDVLRKGVVIDGERFQPMTISLDRQQGANAWLTIGLR 242 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEE 225 EG+ +++R VG V L R G L L GE L Sbjct: 243 EGKNREIRRAMEEVGYPVNRLLRISYGPFQL-GTLKEGEVEELRPR 287 >UniRef50_C1DA59 Pseudouridine synthase n=6 Tax=Betaproteobacteria RepID=C1DA59_LARHH Length = 703 Score = 253 bits (648), Expect = 3e-66, Method: Composition-based stats. Identities = 68/239 (28%), Positives = 112/239 (46%), Gaps = 9/239 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPL---AQQ 57 MRL K +A SR + RV+++G + ++ P V D P+ Sbjct: 453 MRLQKALALAGLGSRRDMDELVAAGRVSINGAVA-ELGARVRPGDKVRVDSKPVLIRWPD 511 Query: 58 HGPRYFMLNKPQGYVCSTDDPDHPT-VLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQ 116 PR + +K +G + + DDP+ T V L + + K A GRLD++T+GL++ T G Sbjct: 512 RLPRVIVYHKQEGEIVTRDDPEGRTTVFDRLPQTRSSKWVAIGRLDVNTSGLLIFTTSGD 571 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL----EVITPT 172 ++R+T P E+ Y V + + + ++ GVQL + + E Sbjct: 572 LANRMTHPSFEVEREYAVRVLGKLTPEQMKETTAGVQLDDGPASFQFIREDDDKEDSVNH 631 Query: 173 QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 R+ I EGR +V+RMF G V L R R G +TL + L G++ L E E++ ++ Sbjct: 632 WYRVGIREGRNREVRRMFEHFGLTVSRLMRVRFGIVTLPSRLKRGQFYELNELEVSKLM 690 >UniRef50_Q0F269 Pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F269_9PROT Length = 289 Score = 253 bits (648), Expect = 3e-66, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 112/234 (47%), Gaps = 7/234 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+++++A SR A R I+ RV+++G+++ + V D + Q G Sbjct: 44 RINRYLAHCGLCSRREADRWIQAGRVSINGQLIEAPGVIVKSGDTVMVDDKLVEPQQGHT 103 Query: 62 YFMLNKPQGYVCSTDD-PDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y + NKP+G +CS D P + F+D VA + + GRLD+DT GL+++TDDG + Sbjct: 104 YILYNKPKGQLCSRLDKKKRPLIYDFID--VAPNVQSIGRLDMDTEGLLMLTDDGALTRA 161 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP----TQVRL 176 +T P + Y + V +T + +G D + + V + T + + Sbjct: 162 LTHPAAKVPREYRARVAGIVELETLAKLRRGGMDIGRGDTSDAWEVTVDSESAGHTWLNI 221 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I GR+ +V+R G+ V L R R G I LD D+ G +R L EI + Sbjct: 222 IILRGRWREVRRTLEECGHPVRRLMRTRFGPIKLDEDMPKGTWRALNRGEIRKL 275 >UniRef50_Q83IR6 Ribosomal large subunit pseudouridine synthase F n=90 Tax=Bacteria RepID=RLUF_SHIFL Length = 290 Score = 253 bits (648), Expect = 3e-66, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 113/232 (48%), Gaps = 8/232 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQH-- 58 +RL+K+I++ SR A R I V ++G+ ++ P V +G + + Sbjct: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDIVKVNGQLIEPREAE 65 Query: 59 GPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 LNKP G V +T+D + ++ F++ + ++ GRLD D+ GL+ +T+ G Sbjct: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHGDLV 123 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 ++I + EK YLVT++ P+ D+ GV + E P R+T+ Sbjct: 124 NKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPILGTVTKKCKVKKE--APFVFRITL 181 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +G Q++RM G V +L R RI ++L + GE+R LT++E+ + Sbjct: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDL 232 >UniRef50_A5EVQ2 Pseudouridine synthase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVQ2_DICNV Length = 266 Score = 253 bits (648), Expect = 3e-66, Method: Composition-based stats. Identities = 68/242 (28%), Positives = 118/242 (48%), Gaps = 13/242 (5%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNP----LAQQ 57 R+ K++A + SR I+ R+ VDG + K+ ++ DG P + + Sbjct: 10 RIQKYLAARGVGSRRQIETWIKEGRLKVDGRVA-ELGQKISGNERLSLDGKPLRIAVEHK 68 Query: 58 HGPRYFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQ 116 + M +KP G +C+ DP+ +V L + + A GRLD++T+GL+L T+DG Sbjct: 69 NPHMILMYHKPAGEICTRKDPEGRVSVFQHLPKISHGRWVAIGRLDLNTSGLLLFTNDGA 128 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNE-KDLTKPAVLEVI------ 169 ++++ P E+ Y V + V ++ +G+ L + T+ L+ + Sbjct: 129 LANQLMHPSAEIEREYWVRVAGEVTEEMLTALRQGIPLDDGLARFTEICPLKTLHEDDTQ 188 Query: 170 TPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 +T+ EGR +V+R++ AVG V L R R G I+L L+ G +R LT E AS Sbjct: 189 FNRYFSVTLKEGRNREVRRLWEAVGCKVSRLKRIRYGTISLPPSLSAGRHRLLTAGEQAS 248 Query: 230 VV 231 ++ Sbjct: 249 LI 250 >UniRef50_Q1LJQ9 Pseudouridine synthase n=3 Tax=Burkholderiales RepID=Q1LJQ9_RALME Length = 238 Score = 253 bits (648), Expect = 3e-66, Method: Composition-based stats. Identities = 93/230 (40%), Positives = 124/230 (53%), Gaps = 3/230 (1%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKL-LPEHDVAYDGNPLAQQHGPR 61 LD+ + Q +R G + V V+GE+ + + + + DG Sbjct: 5 LDRILQSQGFGTRRYCGDLVAAGLVEVNGELCEDPGARFEVDGLRLMVDGEE-WLACTKA 63 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y MLNKP GY CS HP+V L P+ + + A GRLD DTTGL+L+TDDGQ+ H Sbjct: 64 YVMLNKPTGYECSQRPRHHPSVYNLLPVPLRQREVQAVGRLDHDTTGLLLLTDDGQFIHA 123 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 TSP+ K Y VT PV + E GV+L +E E +RLT+ + Sbjct: 124 QTSPKKQVPKIYEVTTFDPVTPEQVEALRTGVKLDDEPAPIAADACEATGERSLRLTLLQ 183 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G+YHQVKRM AAVGNHV LHR IGG+ LD L PGE+R LT E++A++ Sbjct: 184 GKYHQVKRMVAAVGNHVTALHRSAIGGLVLDPALGPGEWRWLTPEDLAAL 233 >UniRef50_C6HYA4 Pseudouridine synthase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYA4_9BACT Length = 638 Score = 253 bits (647), Expect = 4e-66, Method: Composition-based stats. Identities = 80/236 (33%), Positives = 124/236 (52%), Gaps = 8/236 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVA-YDGNPLAQQHG 59 +RL K +A + SR + + I VTVDGE+V ++ P+H V DG PL ++ Sbjct: 26 LRLHKILAHRGVASRRKSEQLIAAGSVTVDGEVVTEPGTRVDPKHQVILVDGRPLPREPE 85 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 F+ KP+G V + DP+ PT+ + P L GRLD T G +L+T++G S Sbjct: 86 TFLFLFYKPKGVVSTLFDPEGRPTLRDYF--PGIDPLLHIGRLDFQTEGALLLTNNGDLS 143 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKG-VQLHNEKDLTKPAVLEVITPT--QVR 175 RI PR +TYLV ++ ++ E+ A+G ++L + V E T T R Sbjct: 144 QRILHPRFEIPRTYLVKIQGGMSPAHLERMARGEIRLDGRPVVPLELVPERQTSTNAWYR 203 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 +T++EGR +V+R+F + V++L R G +TL L PGEYR +T E ++ Sbjct: 204 ITLTEGRNREVRRLFETLNYFVLKLVRTAFGPLTLAG-LEPGEYRTVTPHETELLL 258 >UniRef50_Q21MN5 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q21MN5_SACD2 Length = 324 Score = 252 bits (646), Expect = 5e-66, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 118/234 (50%), Gaps = 10/234 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQ---- 56 +RL+KFI+ SR A + I +RV ++G ++ + V D PL Sbjct: 7 VRLNKFISDSGHCSRREADKLIASDRVKING-LLPELGAVVESGDVVTVDDQPLRASAAD 65 Query: 57 QHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQ 116 + Y NKP G C+TD ++ +D ++ GRLD + GL+L+T DG Sbjct: 66 KTDRIYIAYNKPFGITCTTDQTVKGNIVDAIDHD--ERIFPIGRLDKPSEGLILLTSDGD 123 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRL 176 ++I + +K Y+VT+ +A + AE+ ++G+ + +TKP + VI T ++ Sbjct: 124 IVNKILRAENAHDKEYIVTVNKNLAPNFAEKMSRGLPILG--TITKPCKVRVIGKTTFKI 181 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +++G Q++RM +G V +L R RI I L L PG++R LT+ E+ + Sbjct: 182 ILTQGLNRQIRRMCDYLGYDVKQLVRTRIMNIEL-GKLKPGQWRRLTKVELDLL 234 >UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterineae RepID=A4QE19_CORGB Length = 320 Score = 252 bits (646), Expect = 6e-66, Method: Composition-based stats. Identities = 75/236 (31%), Positives = 112/236 (47%), Gaps = 7/236 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDV-AYDGNPLAQQHG 59 +RL K +AQ SR A I RV V+ IV ++ P +DV DG + Sbjct: 80 VRLQKVLAQAGVASRRHAEILIDQGRVEVNDRIVTTQGVRVNPNNDVIRVDGVRIHINED 139 Query: 60 PRYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPV--AWKLHAAGRLDIDTTGLVLMTDDGQ 116 YF+LNKP+G + D P V + E +L GRLD DT GL+L+T+DG+ Sbjct: 140 LEYFVLNKPRGMHSTMSDELGRPCVGDLVSEKTASGQRLFHVGRLDADTEGLLLLTNDGE 199 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQV 174 ++R+ P++ KTYL T+ + GV+L + A + + + Sbjct: 200 LANRLMHPKYEVSKTYLATVRGEATNKLVSALRDGVELEDGPAKADFAQIIDVFQGKSLL 259 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 R+ I EGR H V+R+F +G V L R ++ + L D PG R L E+ S+ Sbjct: 260 RIEIHEGRKHIVRRLFDELGFPVERLVRTKLHTVQL-GDQKPGSLRALNSSELTSL 314 >UniRef50_B1C6T1 Pseudouridine synthase n=2 Tax=Clostridiales RepID=B1C6T1_9FIRM Length = 238 Score = 252 bits (645), Expect = 6e-66, Method: Composition-based stats. Identities = 76/234 (32%), Positives = 127/234 (54%), Gaps = 4/234 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 MR++K++A SR I +VTV+GE+VR + E D V G ++ Sbjct: 5 MRINKYLASCGVASRRKCEEIISRGKVTVNGEVVRELGTIINVEKDLVKVYGKEVSLDTK 64 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y+MLNKPQG + ++ + L +L GRLD DTTGL+++T+DG +++ Sbjct: 65 KVYYMLNKPQGVISASKSKYGEETVVDLLGKKEHRLFPVGRLDKDTTGLIILTNDGDFAY 124 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLE--VITPTQVRLT 177 ++T P++ EKTY ++ V + ++ +GV + +K L + + V +T Sbjct: 125 KLTHPKYEKEKTYEALVKGKVDSKSLDKLKQGVVIDGKKTSRAKVRLVKMIGVNSLVEIT 184 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 + EGR QVK+M VG+ V++L+R G++L DL GEYR LT+ E++ ++ Sbjct: 185 LIEGRKRQVKKMCEKVGHKVIKLNRTMENGLSL-GDLEIGEYRKLTKNEVSKLL 237 >UniRef50_C0EB54 Pseudouridine synthase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EB54_9CLOT Length = 248 Score = 252 bits (645), Expect = 7e-66, Method: Composition-based stats. Identities = 95/235 (40%), Positives = 137/235 (58%), Gaps = 7/235 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +R+DKF++ Q +R+ A +R RV V+G V+ A K+ PE ++ DG + Sbjct: 3 IRIDKFLSTQAIATRSQAKEMLRAGRVLVNGTPVKAADLKVDPEGDEIRVDGR-VYGYQE 61 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWS 118 Y MLNKPQG V +TDD H TVL + + + L AGRLD DT G VL+TDDG+++ Sbjct: 62 HLYLMLNKPQGVVSATDDKVHRTVLDLVPPELRRRGLFPAGRLDRDTVGFVLITDDGEFA 121 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ---VR 175 H I SPRHH KTY L+ P+ ++ A+GV L + +PA L V+ + ++ Sbjct: 122 HNILSPRHHVPKTYEAGLDGPIGENELSVLAQGVVLGDGTK-CRPAELTVLQSGERPLIQ 180 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + I EGRYHQ+KRMFAAVG V+ L R +IGG+ LD L G+ ++ + + Sbjct: 181 IVIVEGRYHQIKRMFAAVGRRVLTLKRTKIGGLALDPSLKEGDCIAISPSNLEKI 235 >UniRef50_C1XV14 Pseudouridine synthase n=2 Tax=Meiothermus RepID=C1XV14_9DEIN Length = 369 Score = 252 bits (644), Expect = 8e-66, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 108/231 (46%), Gaps = 7/231 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL +F+A+ SR A IR RVT++ +I + V DG + Sbjct: 1 MRLQQFLARAGVASRRKAEDLIREGRVTINDQIA-GIGSSVSESDVVCLDGERVRLPEKK 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 L+KP G + DP +Y L P LH GRLD D+ GL+L+T+DG + + Sbjct: 60 VVIALHKPVGVTTTKSDPHAERTVYQL-VPDVPGLHPVGRLDKDSEGLLLLTNDGDLTLK 118 Query: 121 ITSPRHHCEKTYLVTLE-SPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 +T PR+ K Y + V++ + +GV L + A R+ ++ Sbjct: 119 LTHPRYGVRKVYRAWCKHGRVSEADCRRLVEGVALDDGLAQALEAEPTQEG---ARIVMA 175 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EG+ +V+RM +G V L R ++G I L L PGE+R LT EEI + Sbjct: 176 EGKKREVRRMLGRLGYPVTRLVRLQVGPIKL-GKLNPGEWRYLTPEEIGLL 225 >UniRef50_Q49YI4 Pseudouridine synthase n=2 Tax=Staphylococcus RepID=Q49YI4_STAS1 Length = 232 Score = 252 bits (644), Expect = 8e-66, Method: Composition-based stats. Identities = 86/231 (37%), Positives = 131/231 (56%), Gaps = 3/231 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF++ +R + ++ +VT+D ++ + ++ PE ++ + Sbjct: 1 MRLDKFLSNMGVGTRTEVKQRLKKKQVTIDDKVETSPKKQINPELEIVKVNDQKIDFVNK 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y MLNKP+ Y+ +T D H TVL +++ L GRLD DT GL+L+T+DGQ++H Sbjct: 61 VYLMLNKPKDYISATTDEQHKTVLDLIEDYRYLDLFPVGRLDKDTEGLLLITNDGQFNHE 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP-TQVRLTIS 179 + SP H KTY V + + + F G++L+ + L KPA L + +TI Sbjct: 121 LMSPGKHVAKTYEVISQKNITKNDINAFKVGIELN--EGLAKPAKLVQGDELNKSFVTIY 178 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EGRYHQVKRMF A+ N V+ L R RIG + LD+ LA GEYR LT+++ + Sbjct: 179 EGRYHQVKRMFHAIDNEVLALKRIRIGDLQLDSTLASGEYRHLTQQDFKLL 229 >UniRef50_A0M7H0 Ribosomal large subunit pseudouridine synthase F n=4 Tax=Flavobacteriales RepID=A0M7H0_GRAFK Length = 295 Score = 252 bits (644), Expect = 9e-66, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+K+IA SR A I VTV+G+ + +++ E DV +DG L P Sbjct: 63 IRLNKYIANSGVCSRRDADMYIAAGNVTVNGKSITEMGYRVKLEDDVRFDGRRLNP-EKP 121 Query: 61 RYFMLNKPQG-YVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP G +V + TV+ + + K+ G+LD GL+L T+DG + Sbjct: 122 EYILLNKPAGFFVTGNPEKGGKTVMELVARTTSAKVSPVGKLDNQAKGLLLFTNDGTLAK 181 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEK-DLTKPAVLEVITPTQVRLTI 178 ++ P++ + Y VTL + + E KGV + K +T + +E +V + + Sbjct: 182 KLAKPKNGIRQIYQVTLNKNLTKEDLEGIEKGVYIEGSKVLITSISFIEDKPHNEVGIEL 241 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + H V R+F ++G V L R GG+T DL G +R LT++E+ ++ Sbjct: 242 YSIKEHIVTRIFKSLGYEVESLDRVVFGGLT-KKDLPRGRHRNLTKQEVINL 292 >UniRef50_C7PFL3 Pseudouridine synthase n=3 Tax=Bacteria RepID=C7PFL3_CHIPD Length = 389 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 8/230 (3%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPL--AQQHGP 60 L+KFI+ SR A I RV ++ + P V DG+ + A++ Sbjct: 7 LNKFISDTGYCSRREADNLITSGRVLLNDRPA-ALGNRYKPGDTVEVDGSLITAAKKEKR 65 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y LNKP G +T+ ++ F++ P ++ GRLD D+ GL+ +T+DG ++ Sbjct: 66 VYLALNKPPGITTTTELHIKDNIISFVNYP--QRIFPIGRLDKDSEGLIFLTNDGDIINK 123 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 I ++ EK Y+V + P+ + Q ++GV + + T P +++ R+T+++ Sbjct: 124 ILRAANNHEKEYVVRVNKPIDTNFLHQMSQGVPILD--TRTLPCKVQMTGRQTFRITLTQ 181 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G Q++RM +G VV L R RI + LD L G++R L+E EIA + Sbjct: 182 GLNRQIRRMCEYLGYTVVGLQRVRIMNVRLDK-LPLGKWRYLSEAEIAFI 230 >UniRef50_Q55578 Uncharacterized RNA pseudouridine synthase slr0361 n=21 Tax=Cyanobacteria RepID=Y361_SYNY3 Length = 249 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 135/242 (55%), Gaps = 16/242 (6%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 R+ K ++Q SR A I RV+V+G++ N K P+ D ++ DG + + P Sbjct: 4 RIQKLLSQWGIASRRHAEEMILAGRVSVNGKVA-NLGDKADPQQDFLSVDGKQIKADNRP 62 Query: 61 R--YFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWK--LHAAGRLDIDTTGLVLMTDDG 115 R Y ++NKP+ + + DDP TVL L + + LH GRLD ++TG +L+T+DG Sbjct: 63 RDIYLLVNKPRDVLSTCDDPRGRKTVLDLLPQDLQRGKGLHPVGRLDRNSTGALLLTNDG 122 Query: 116 QWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT--- 172 + + R+T PR+H KTY V LE +D+ E++ G+ L +K T PA LEVI+ Sbjct: 123 ELTLRLTHPRYHLPKTYDVWLEGNPSDEDLEKWRSGMMLDGKK--TLPATLEVISENKDQ 180 Query: 173 -QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLD---ADLAPGEYRPLTEEEIA 228 + +T++EGR Q++R+ +G V++LHR IG + L L G++R L+ EI Sbjct: 181 IHLLVTLTEGRNRQIRRLAEELGLTVLKLHRRTIGPLQLHTRGKVLGSGQFRFLSPAEIR 240 Query: 229 SV 230 + Sbjct: 241 LL 242 >UniRef50_B6IXC3 Pseudouridine synthase n=2 Tax=Alphaproteobacteria RepID=B6IXC3_RHOCS Length = 551 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 103/223 (46%), Gaps = 5/223 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +++ SR A R I RV+V+G ++ A + P + DG P+ + R Sbjct: 32 RISKRLSRAGLCSRRDAERWIAEGRVSVNGRVLDTPAVTVRPGDRIVVDGQPVPEPEPTR 91 Query: 62 YFMLNKPQGYVCSTDD-PDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 + +KP G V + D PTV L P ++ + GRLD+ + GL+L+T+DG + Sbjct: 92 VWRYHKPDGLVTTARDEKGRPTVFDNLP-PELPRVVSVGRLDLTSEGLLLLTNDGALARH 150 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLE--VITPTQVRLTI 178 + P + Y V + + + A+G+ + + V++ V T + +++ Sbjct: 151 LELPVTGWLRRYRVRVHGAPDEAQIAKLAQGIIIEGIEYGPIETVVDRSVGANTWLTVSL 210 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRP 221 EGR +V+R+ +G V L R G L L PG+ Sbjct: 211 REGRNREVRRVMEHLGLPVSRLIRVAYGPFQL-GKLEPGQVEE 252 >UniRef50_Q3J464 Pseudouridine synthase n=15 Tax=Bacteria RepID=Q3J464_RHOS4 Length = 508 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 63/227 (27%), Positives = 107/227 (47%), Gaps = 5/227 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +++ SR A R I R+ V+G + + A + P+ + DG PLA R Sbjct: 9 RIAKVLSRAGIASRRDAERMIELGRIAVNGRTIDSPALNVGPKDRITVDGQPLAPPEPAR 68 Query: 62 YFMLNKPQGYVCSTDD-PDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 ++ KP+G V S D TV L E + ++ + GRLD+++ GL+L+T+DG+ R Sbjct: 69 LWLYYKPEGLVTSASDEKGRETVFDHLPEGMP-RVMSVGRLDLNSEGLLLLTNDGELKRR 127 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT--I 178 + P + Y V ++ D E KG+ + E L+ + LT + Sbjct: 128 LELPSTGWLRKYRVRVKGNPTDADLEPLRKGITVEGESFQPMTVSLDRVQGANAWLTVGL 187 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEE 225 EG+ +++R +A+G V L R G L+ +L PG + + Sbjct: 188 REGKNREIRRAMSALGLTVNRLIRVSYGPFRLN-ELEPGMVEEVRPK 233 >UniRef50_Q3MC44 Pseudouridine synthase n=21 Tax=Cyanobacteria RepID=Q3MC44_ANAVT Length = 288 Score = 251 bits (642), Expect = 1e-65, Method: Composition-based stats. Identities = 79/241 (32%), Positives = 122/241 (50%), Gaps = 13/241 (5%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDV-AYDGNPLAQQHGP 60 RL K +AQ SR A IR +RV ++G + K+ PE D+ DG ++ Q Sbjct: 30 RLQKVLAQWGIASRREAEEMIRRSRVQINGTLA-ELGQKVNPERDIITVDGKSVSAQRHH 88 Query: 61 R--YFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWK--LHAAGRLDIDTTGLVLMTDDG 115 R Y +LNKP G V + DP TVL L E + LH GRLD +TG +++T+DG Sbjct: 89 RLTYLLLNKPTGVVSTCYDPQGRKTVLDLLPEELRKGSGLHPVGRLDAYSTGALILTNDG 148 Query: 116 QWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQ 173 + ++T P H+ KTY + ++ + + + +GV L K L + ++ Sbjct: 149 DLTFKLTHPSHNIPKTYQILVKGHPPEAVLKMWREGVLLDGRKTRKAKVSLLESLAEKSR 208 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDAD----LAPGEYRPLTEEEIAS 229 + + + EGR Q++R+ +G V++LHR IG I L L G YR L ++EI S Sbjct: 209 LEIVLQEGRNRQIRRVAEQLGYPVIKLHRTAIGSIQLQTSKQPLLRAGNYRILRDDEIRS 268 Query: 230 V 230 + Sbjct: 269 L 269 >UniRef50_Q7UUP0 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UUP0_RHOBA Length = 395 Score = 251 bits (642), Expect = 1e-65, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 115/233 (49%), Gaps = 8/233 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 R+++ +A SR IR RV VDGE + + P+ V DGN L Q Sbjct: 26 RINQLLASAGFGSRRQCEELIREGRVDVDGETITELGTTVDPDLQKVRVDGNYLRPQ-KL 84 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y+++NKP G V + DP P V+ + ++ GRLDI + GL+L+T+DG + Sbjct: 85 VYYVVNKPVGIVTTNRDPRGRPRVIDLVPP--TERVFPVGRLDISSEGLILLTNDGDLAQ 142 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRLT 177 ++ P+ +K Y V + V +T ++ +G+ + A + T++ + Sbjct: 143 KLAHPKFGIQKVYRVVVAGEVRGETMKKMREGIYIAEGLVQVDGAKIIKARTKATEMEIR 202 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EG+ +++R+ A G+ V +L R IG + L D+ G YR LT +E+ + Sbjct: 203 LKEGKNREIRRILARFGHKVQQLRRVAIGPLKL-GDVPRGAYRKLTRDEVDKL 254 >UniRef50_B1M661 Pseudouridine synthase n=2 Tax=Alphaproteobacteria RepID=B1M661_METRJ Length = 601 Score = 251 bits (642), Expect = 1e-65, Method: Composition-based stats. Identities = 63/218 (28%), Positives = 102/218 (46%), Gaps = 3/218 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A+ SR A I RV+V+GE + + A + + DG P+ + R Sbjct: 87 RIAKAMARAGIASRRDAETMIVAGRVSVNGETLTSPARNVTENDRILIDGEPMPSRERSR 146 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 ++ +KP+G V + DP+ ++ + ++ A GRLDI+T GL+L+T+DG + I Sbjct: 147 LWIFHKPRGVVTTARDPEGRQTVFDVLPEDLPRVVAVGRLDINTEGLLLLTNDGGLAKVI 206 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT--IS 179 P + Y V ++ AKGV + + A L+ + V LT + Sbjct: 207 AHPDTGWLRRYRVRAHGDTDQAQLDRLAKGVTIDGMEYGPVEATLDRVQGDNVWLTLGLR 266 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPG 217 EG+ +VKR+ +G V L R G L DL G Sbjct: 267 EGKNREVKRILEHLGLSVNRLIRLSFGPFQL-GDLEVG 303 >UniRef50_B0S303 Pseudouridine synthase n=2 Tax=Finegoldia magna RepID=B0S303_FINM2 Length = 235 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 86/230 (37%), Positives = 136/230 (59%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLD+ +++ +R + ++ +TV+ V+ ++ + +DV + + + Sbjct: 1 MRLDRMLSEMKIATRKEIKQMVKKGIITVNDVTVKKSSEHIDENNDVVKIYDEVIEYRKF 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 YF++NK +G + DP H TV+ + E + L+ GRLD+DTTGL+++T+DG+++H Sbjct: 61 LYFVMNKRKGVTSHSKDPMHKTVIDDMGELCVFDLNPVGRLDLDTTGLLIITNDGKFAHN 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 + SP+ K Y VTL V + + F KG++L E +TKPA +E+I LTI E Sbjct: 121 LISPKKDVSKKYKVTLRDKVDEKYNDTFEKGIKLMPEDIVTKPAKMEIIDDYNCYLTIKE 180 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G+YHQVKRMF VGN VVEL R +IG L DL G++R LT+EE+ + Sbjct: 181 GKYHQVKRMFEKVGNEVVELQRVQIGDFKLPEDLEEGDFRELTDEELRIL 230 >UniRef50_C7NBL1 Pseudouridine synthase n=3 Tax=Leptotrichia RepID=C7NBL1_LEPBD Length = 252 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 88/251 (35%), Positives = 135/251 (53%), Gaps = 22/251 (8%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF+A +R ++ +V+V+ V++ + E D+ N + Sbjct: 1 MRLDKFLANSGIGTRKEVKEILKNKKVSVNNVFVKDGKIHVDEEKDIVKYENKIINYKPF 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFL-DEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y M+NKP G + +T+D H TV+ L DE + + GRLDIDT GL+L+T+DG SH Sbjct: 61 VYIMMNKPAGVISATEDSHHKTVIDLLNDEYRTYDIFPVGRLDIDTEGLILLTNDGILSH 120 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT------- 172 + SP+ H +K Y V + +++D + G++L E +TK A +E+I Sbjct: 121 NLLSPKKHVDKKYYVKITKSLSEDDIKTLENGIKLE-ENFITKNAKVEIICNNSEKESED 179 Query: 173 -------------QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEY 219 V +TISEG++HQVKRMF AVGN V+ L R ++G + LD +L G Y Sbjct: 180 FDFGENENNKNENSVYITISEGKFHQVKRMFKAVGNEVLYLKRVKMGNLLLDENLELGGY 239 Query: 220 RPLTEEEIASV 230 R LT++E+ + Sbjct: 240 RELTQKELNGL 250 >UniRef50_C6BUF1 RNA-binding S4 domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BUF1_DESAD Length = 251 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 66/239 (27%), Positives = 121/239 (50%), Gaps = 10/239 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +RL+K+IA SR A ++ +V V+GE+ + ++ P++D V +G + Sbjct: 7 IRLNKYIASAGIASRRGADELVQKGKVKVNGELADSPGIQVDPDNDRVEVNGKLVQHDEK 66 Query: 60 PR--YFMLNKPQGYVCSTDDP-DHPTVLYFLDEP-VAWKLHAAGRLDIDTTGLVLMTDDG 115 + Y +L+K V + DP TVL L + ++ GRLD + G++L+T DG Sbjct: 67 SKDLYILLHKTIETVTTAKDPQGRKTVLDLLPPDVINRRVFPVGRLDFYSEGMLLLTTDG 126 Query: 116 QWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP---- 171 + +R+T P+ H K Y VT+ +++ G+ L ++ +L P ++ I+ Sbjct: 127 ELCNRMTHPKWHLPKIYHVTIRGKLSEKELSVMQNGMYLEDKGELLAPVKIKAISEVGET 186 Query: 172 TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 T+ + + +G Q++RMF ++ L R R G I L L PG++R L+ +E+ + Sbjct: 187 TKYEMELRQGINRQIRRMFGEFDKTILRLKRVRQGRIEL-GALKPGKWRELSAKELTLL 244 >UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium RepID=C8NNL7_COREF Length = 329 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 77/236 (32%), Positives = 112/236 (47%), Gaps = 7/236 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDV-AYDGNPLAQQHG 59 +RL K +AQ SR A I RV V+G IV ++ P DV DG + Sbjct: 89 IRLQKVLAQAGVASRRHAEILIDNGRVEVNGRIVTTQGTRVNPNSDVIRVDGVRININED 148 Query: 60 PRYFMLNKPQGYVCST-DDPDHPTVLYFLDEPV--AWKLHAAGRLDIDTTGLVLMTDDGQ 116 YF+LNKP+G + DD P V + E +L GRLD DT GL+L+T+DG+ Sbjct: 149 LEYFVLNKPRGMHSTMSDDLGRPCVGDLVSEKTASGQRLFHVGRLDADTEGLLLLTNDGE 208 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQV 174 ++R+ P++ KTYL T+ + KG++L + + + + Sbjct: 209 LANRLMHPKYEVRKTYLATVRGEAGPNLVTTLRKGIELEDGPAKADYVQIIDTFQGKSLI 268 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 RL I EGR H V+RM G V L R ++ + L + PG R L E+AS+ Sbjct: 269 RLEIHEGRKHIVRRMLDEAGFPVERLVRTKLHTVQL-GEQKPGSLRALNASELASL 323 >UniRef50_Q9HZ55 Ribosomal large subunit pseudouridine synthase B n=67 Tax=Gammaproteobacteria RepID=RLUB_PSEAE Length = 386 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 68/241 (28%), Positives = 112/241 (46%), Gaps = 19/241 (7%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG--- 59 L K +A+ SR I RV V+G + + ++ + DG+ + ++ Sbjct: 16 LQKVLARLGVGSRRDVEVWIAEGRVNVNGSVA-SLGQRVDSHDAITVDGHLIRREEAAES 74 Query: 60 -PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 R + NKP+G VC+ DDP+ PT+ L + GRLDI+TTGL+L T DG+ Sbjct: 75 VRRVLIYNKPEGEVCTRDDPEGRPTIFDRLPRLRTGRWINVGRLDINTTGLLLFTTDGEL 134 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT------- 170 ++R+ P + ++ Y V + V ++ E+ GV L + PA I Sbjct: 135 ANRLMHPSYEMDREYAVRVRGEVTEEMIERLLNGVMLEDG-----PAKFSDIQQAPGGEG 189 Query: 171 -PTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 + EGR +V+R++ + G V L R R G + L ++L G YR + + EI Sbjct: 190 FNHWYHCVVMEGRNREVRRLWESQGLVVSRLKRVRFGPVFLTSELTMGRYREMDQREIDI 249 Query: 230 V 230 + Sbjct: 250 L 250 >UniRef50_B0SBU8 Pseudouridine synthase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SBU8_LEPBA Length = 243 Score = 251 bits (641), Expect = 2e-65, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 120/233 (51%), Gaps = 6/233 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RLDK + +R+ +EI V V+G +V++ +K+ V Y L ++ Sbjct: 5 RLDKVLGNYGFGTRSDVKKEIYQGNVKVNGLVVKDPGYKITLTDIVVYYDETLNRKEFY- 63 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVA-WKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 YFM+NK + +T+DP TV+ +L E L GRLD +T GL+L T DG +H Sbjct: 64 YFMMNKAPDCITATEDPREKTVMDYLSERHRNMNLFPIGRLDKETEGLLLFTTDGTLAHY 123 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT--- 177 TSP+H EK Y + +PV QF G+ L + T PA L + P+ + Sbjct: 124 YTSPKHFVEKEYYAEISAPVTAFDISQFESGITLDDG-YKTLPARLAIPDPSNPHIATVW 182 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EG+Y Q++RMF ++G V L R ++G + LD DL G YR LTE E + Sbjct: 183 LREGKYRQIRRMFQSLGKEVQYLKRVKMGNLELDRDLEVGSYRELTEAEEKIL 235 >UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0LG91_HALO1 Length = 553 Score = 250 bits (640), Expect = 2e-65, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 131/237 (55%), Gaps = 11/237 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +RL ++++Q +R A I V+V+G+ V K++P D V+ G + Sbjct: 5 IRLQRYLSQCGVAARRKAEELITSGVVSVNGQRVTELGTKVVPGRDRVSVRGEAV-YPEE 63 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 P Y +LNKP+G + + DP+ PTV+ +L + ++ GRLD + G++L+T+DG S Sbjct: 64 PFYVLLNKPKGCLTAVTDPENRPTVMEYL-HGLPARVVPVGRLDFYSEGVLLLTNDGDLS 122 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT-----Q 173 R+ SPRHH EKTY V + V + E +GV+L + +T+PA ++++ T Sbjct: 123 ARLQSPRHHVEKTYHVKVRDQVTERHLEVLRQGVRLEDG-TVTRPAQIDMLGGTKSRHDW 181 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + +T++EG+ Q+ RM +G V++L R GG+T L G+ R LT+ E+ + Sbjct: 182 LVITLTEGKSRQIHRMLGVLGYTVMKLQRVAFGGLTFHG-LRVGDARELTQAEVNDL 237 >UniRef50_Q15Q67 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q15Q67_PSEA6 Length = 241 Score = 250 bits (640), Expect = 2e-65, Method: Composition-based stats. Identities = 91/221 (41%), Positives = 131/221 (59%), Gaps = 6/221 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RLD+ ++ SR A ++G RVTV GE ++ A K+ P V DG L G Sbjct: 15 RLDQLLSNLGYCSRKEARYLLKGKRVTVKGEFAKSPALKVDP-ATVRVDGEALDAPDG-I 72 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK---LHAAGRLDIDTTGLVLMTDDGQWS 118 MLNKP GYVCS D+ + + L E ++ + + GRLD DT+GL+L+TDD + Sbjct: 73 LVMLNKPLGYVCSHDNNEGMRIYDLLPERWEFRNPKIVSVGRLDKDTSGLILVTDDTKLV 132 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 H++TSP+HH +K Y V+++ P+ D + FAKGV L + PA +E+++ +T+ Sbjct: 133 HQLTSPKHHVDKVYQVSVDCPLQSDIIDSFAKGVVLGEGAEQCLPAKIEIVSENVANVTL 192 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEY 219 +EG+YHQV+RMFAA G HV LHR + G L DLA GE+ Sbjct: 193 NEGKYHQVRRMFAACGYHVEALHRSQFGQYRLQ-DLAQGEW 232 >UniRef50_C6XB83 RNA-binding S4 domain protein n=2 Tax=Methylophilaceae RepID=C6XB83_METSD Length = 455 Score = 250 bits (640), Expect = 3e-65, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 111/240 (46%), Gaps = 18/240 (7%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K +A+ SR A I V V+G++V ++ P+ ++ Q Sbjct: 217 RLSKRMAELGLCSRREADEWIVNGWVRVNGQVVDELGSRVEPDANIEVSKEAEKHQSEIV 276 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAW---------------KLHAAGRLDIDTT 106 +L+KP GYV + + + + W L AGRLDID+T Sbjct: 277 TILLHKPVGYVSGQAEDGYEPAVVLVHPDNHWAEDPVQKEFRRGFLKGLAPAGRLDIDST 336 Query: 107 GLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL 166 GL+++T DG+ + ++ EK YLV +E ++D+ + G+ L + KPA + Sbjct: 337 GLLVLTQDGRVARQLIGEDSQTEKEYLVRVEGTLSDEGLRKLNHGLSLDGVQL--KPAKV 394 Query: 167 EVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 Q+R + EGR Q++RM VG HVV L R RIG + L L PG++R L E Sbjct: 395 SWQNEDQLRFVLREGRKRQIRRMCELVGLHVVGLKRVRIGSVAL-GKLPPGQWRYLRPGE 453 >UniRef50_Q0G3T3 Pseudouridine synthase n=4 Tax=Alphaproteobacteria RepID=Q0G3T3_9RHIZ Length = 639 Score = 250 bits (639), Expect = 4e-65, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 3/223 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR+ + +A+ SR A I RV V+G+I+ + A + P + DG L Q Sbjct: 184 MRIARRLARAGIASRRDAEAMIVDGRVKVNGKIIDSPALDVKPTDRIEVDGALLPQAERT 243 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 R ++ +KP G V + DP+ ++ + ++ + GRLDI+T GL+L+T+DG S Sbjct: 244 RLWLFHKPAGTVTTNKDPEGRRTVFDMLPEDMPRVLSIGRLDINTEGLLLLTNDGGLSRV 303 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT--I 178 + P + Y V + ++ G+ + A L+ + V +T + Sbjct: 304 LELPSTGWLRRYRVRAHGSITQAKLDELRNGISVDGVFYGAIEATLDREQGSNVWITLGL 363 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRP 221 EG+ +VK + A+G V L R G L DLA G R Sbjct: 364 REGKNREVKNVLGALGLEVNRLIRLSYGPFQL-GDLAEGSVRE 405 >UniRef50_A6GNL7 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=A6GNL7_9BURK Length = 458 Score = 249 bits (638), Expect = 4e-65, Method: Composition-based stats. Identities = 67/230 (29%), Positives = 107/230 (46%), Gaps = 7/230 (3%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQ---HG 59 L K +A SR I RV+V+ E + ++LP V +G + ++ Sbjct: 71 LHKVLADSGMGSRREMEELIVAGRVSVNAEPA-HLGQRVLPTDQVRVNGKLIQRKNKSKP 129 Query: 60 PRYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 PR + +KP G + S DDP TV L + K A GRLD +T GL+L T G+ + Sbjct: 130 PRVLIYHKPAGEIVSMDDPQGRTTVFQKLPKISNGKWIAVGRLDFNTEGLLLFTSSGELA 189 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNE--KDLTKPAVLEVITPTQVRL 176 +R+ PR+ ++ Y V + ++++ +Q G+QL + K L A ++ Sbjct: 190 NRLMHPRYEVQREYAVRILGELSEEQRQQLLTGIQLEDGPAKFLYVDAAGGEGANRWYKV 249 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 + EGR +V+RMF A V L R R G I + + L G + + E Sbjct: 250 GLKEGRNREVRRMFEACNLTVSRLIRTRFGDIMMPSTLKRGRHMEMEALE 299 >UniRef50_C8P302 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P302_ERYRH Length = 229 Score = 249 bits (638), Expect = 4e-65, Method: Composition-based stats. Identities = 95/229 (41%), Positives = 132/229 (57%), Gaps = 5/229 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLL-PEHDVAYDGNPLAQQHG 59 MRLDKF+A +R ++ VTV+ ++VR+A L + +V G ++ Q Sbjct: 1 MRLDKFLAHNGFGTRKDVKILVKKGMVTVNHDVVRDAGMVLNLEKDEVFVKGESVSYQKD 60 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 YFM+NKP GY+C + +P+VL + E L GRLD DT GL+L+T+DGQ+SH Sbjct: 61 -IYFMMNKPAGYICEHNPEMYPSVLELI-ESYHRDLVFVGRLDADTEGLLLITNDGQFSH 118 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 R+ + + K Y V L+ P E+ KG+ L +E L KPA +EV+ + LTI Sbjct: 119 RVAHSKSNVHKQYYVELDKPFDLRFCEELEKGMMLGDE--LLKPAQVEVVGERAIHLTIG 176 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 EG+YHQVKRM A N V L R +IG + LD+ L PG YR L+EEEI Sbjct: 177 EGKYHQVKRMMHACDNEVTYLKRIKIGALELDSSLQPGAYRDLSEEEIN 225 >UniRef50_Q1H048 Pseudouridine synthase n=4 Tax=Betaproteobacteria RepID=Q1H048_METFK Length = 383 Score = 249 bits (636), Expect = 6e-65, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 107/236 (45%), Gaps = 7/236 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLA---QQH 58 RL K +A SR I R+T++G+ ++P V D PL + Sbjct: 30 RLHKLLALAGFGSRREMETLIASGRITINGKTA-EVGASVVPSDVVRLDSRPLRLPFEPE 88 Query: 59 GPRYFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 P+ + +KP+G + S DDP++ +V L K A GRLD++T+GL++ T G+ Sbjct: 89 LPQVLLYHKPEGEIVSHDDPENRASVFDKLPRIRNGKWIAIGRLDMNTSGLLIFTTSGEL 148 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLE--VITPTQVR 175 ++R PR+ E+ Y V + + + Q G++L + + Sbjct: 149 ANRFMHPRYEVEREYAVRIFGELTEGEMAQLTYGIELDDGPANFDSIRPQGGEGANHWYE 208 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 + + EGR +V+R+F A V L R R G + L L G+ L +E+ +++ Sbjct: 209 VILREGRNREVRRLFEAFQKPVSRLIRVRFGPVNLPPRLKRGQMIHLGAKEVTALL 264 >UniRef50_B2IHU4 Pseudouridine synthase n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IHU4_BEII9 Length = 528 Score = 249 bits (636), Expect = 7e-65, Method: Composition-based stats. Identities = 63/222 (28%), Positives = 102/222 (45%), Gaps = 6/222 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A+ SR A I RV+V+G ++ + E + DG LA + R Sbjct: 91 RIAKVMARAGLCSRRDAEAWIAEGRVSVNGTVLTQPGVSVSDEDVILVDGEKLAARGHTR 150 Query: 62 YFMLNKPQGYVCSTDDPD-HPTVLYFL--DEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 F+ +KP+G V + DP+ PTV +L P ++ + GRLDI+T GL+L+T+DG S Sbjct: 151 LFLFHKPRGLVTTNHDPEGRPTVFDYLHERHPDMPRVLSIGRLDINTEGLLLLTNDGGLS 210 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRL 176 + P + Y V + +Q +G+ + E + + L Sbjct: 211 RLLELPTTGWVRRYRVRAKGTTDQAVLDQLRQGITIDGIHYAGMEVTFDREQGANSWLTL 270 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGE 218 ++ EG+ +VKR+ +G V L R G L DL G+ Sbjct: 271 SLREGKNREVKRVLEQIGLEVNRLIRLSFGPFQL-GDLPEGD 311 >UniRef50_C7NDY8 Pseudouridine synthase n=5 Tax=Fusobacteriaceae RepID=C7NDY8_LEPBD Length = 228 Score = 248 bits (635), Expect = 9e-65, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 119/231 (51%), Gaps = 7/231 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL+KFIA+ SR A I RVTV+ + + PE V DG + Sbjct: 1 MRLNKFIAETGFCSRRKADELINEGRVTVN-KHEAIIGMDVKPEDVVRIDGERVKLNTRY 59 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y++LNKP+ +CS +D + F+ +L GRLD T GL+++++DG+ + Sbjct: 60 EYYILNKPKRVLCSNEDKFGRRLAVDFI--KSRARLFTYGRLDFMTEGLIIISNDGEVYN 117 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 + PR K+Y+ + + D E GV + ++ T PA ++ I ++R+ I Sbjct: 118 HVMHPRKKLYKSYIAKVSREIEDKDIEALQHGVVIDGKR--TAPAKVKKIDKKELRIAIF 175 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EGR Q+++M +G +V L R ++G +TL +L GEYR L E+EI + Sbjct: 176 EGRNRQIRKMLETLGYNVNSLKRIKVGELTL-GNLQVGEYRALNEDEIKYL 225 >UniRef50_C7H5G4 Pseudouridine synthase n=8 Tax=Clostridiales RepID=C7H5G4_9FIRM Length = 294 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 117/236 (49%), Gaps = 10/236 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVA-YDGNPL--AQQH 58 R+ K +A+Q SR A + I RV V+G V+ K+ P DV D + + Sbjct: 22 RIQKIMAEQGLCSRRAAEQIIAEGRVKVNGHPVK-VGDKMDPNRDVLHVDDERIYIQKNQ 80 Query: 59 GPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y L KP+GYV + D + L + +L+ GRLD D+ GL+LMT+DG ++ Sbjct: 81 QLYYLALYKPRGYVTTASDELGRKTVMELVSDIPARLYPVGRLDKDSEGLLLMTNDGAFA 140 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP----TQV 174 +T P K Y VT++ + + + GV L + T P + V+T T + Sbjct: 141 QAVTHPSGGISKLYRVTVQPRADESQILKMSSGVVLDDGTK-TMPCAINVVTDEPGRTVM 199 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +T+ EG+ +++RM AVG VV L R G + L L PG YR LT+ E++ + Sbjct: 200 EMTLKEGKNREIRRMCEAVGLEVVRLKRNAEGVVKL-GMLKPGTYRELTKAEVSGL 254 >UniRef50_Q5F8V3 Pseudouridine synthase n=21 Tax=Proteobacteria RepID=Q5F8V3_NEIG1 Length = 350 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 105/242 (43%), Gaps = 18/242 (7%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQ---H 58 RL K +A SR I VTV+G+ K+ P+ V G+ + + Sbjct: 99 RLQKVLAASGVGSRREMEEWINNGWVTVNGKTA-QLGDKVTPDDHVTVKGSIIKLKWADR 157 Query: 59 GPRYFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 PR + K +G + S DDP ++ L + + + A GRLDI+T+GL+++T G+ Sbjct: 158 LPRIILYYKQEGEIVSRDDPQGRVSIFDRLPQAASSRWVAIGRLDINTSGLLILTTSGEL 217 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQF-AKGVQLHNEKDLTKPAVLEVI------- 169 R P E+ Y V + + + +GV L + A +E I Sbjct: 218 VQRFAHPSFEVEREYAVRVLGGLTTEQMRSLTEEGVMLEDGL-----AKVERIYEQGGEG 272 Query: 170 TPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 + I EGR +V+R+F + G V L R G I L L G++ L E+A+ Sbjct: 273 ANKWYNIVIKEGRNREVRRIFESQGLTVSRLVRVAFGPIGLPNRLKRGQFYELNPAEVAN 332 Query: 230 VV 231 ++ Sbjct: 333 IL 334 >UniRef50_Q1Q1Q0 Pseudouridine synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1Q0_9BACT Length = 260 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 124/234 (52%), Gaps = 9/234 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAY-DGNPLAQQHGP 60 RL K +A SR I RVTVDGE V + V Y DG P+ + Sbjct: 4 RLQKVLASAGIGSRRECENVILAGRVTVDGERVTALGATVDAGKSVIYCDGMPI-RPEAK 62 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y++LNKP+ +C+ D + + + V +L+ GRLD + GL+++T+DG+ S++ Sbjct: 63 IYYLLNKPKDCLCTNYDELNRLRAIDIIKNVKQRLYTIGRLDKQSEGLIIITNDGELSNK 122 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TPTQVRL 176 ++ P++ KTY + ++ ++++T GV L K T+P ++ + ++ + Sbjct: 123 LSHPKYEVNKTYFIEIDGYLSNETITALQSGVWLAFGK--TQPVRIKKMHRSFKKSRFEM 180 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EG+ +++RM A G+ V L R +IG + D DL G+YR LTE+EI S+ Sbjct: 181 ILCEGKNREIRRMLADHGHKVRTLRRIKIGSLC-DPDLKVGKYRKLTEQEIKSL 233 >UniRef50_Q8Z1V3 Ribosomal large subunit pseudouridine synthase F n=235 Tax=Bacteria RepID=RLUF_SALTI Length = 289 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 8/231 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQH--G 59 RL+K+I++ SR A R I V ++G+ +++ V +G + + Sbjct: 8 RLNKYISESGICSRREADRFIEQGNVFINGKRA-AIGDQVVAGDVVKVNGRLIEPREADD 66 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 LNKP G V +T+D + ++ F++ + ++ GRLD D+ GL+ +T+ G + Sbjct: 67 LVLIALNKPVGIVSTTEDGERDNIVDFVNH--SKRIFPIGRLDKDSQGLIFLTNHGDLVN 124 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 +I + EK YLVT++ P+ D+ GV + E P R+T+ Sbjct: 125 KILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPILGTVTKKCKVKKE--APFVFRITLV 182 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +G Q++RM G V +L R RI ++L + GE+R LT++E+ + Sbjct: 183 QGLNRQIRRMCEYFGYEVTKLERTRIMNVSLSG-IPLGEWRDLTDDELIDL 232 >UniRef50_C6JI84 Pseudouridine synthase n=2 Tax=Fusobacterium RepID=C6JI84_FUSVA Length = 236 Score = 247 bits (633), Expect = 1e-64, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 124/236 (52%), Gaps = 12/236 (5%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQ-QHG 59 MR++K++A SR + I + ++GE K+ + ++ G + + Sbjct: 4 MRINKYLASLGIASRREVDKMIEEGSIKINGEKAT-PGIKVSDKDEIYIRGKKIEKHTEK 62 Query: 60 PRYFMLNKPQGYVCST-DDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y++LNKP + S+ DD TV+ ++ ++ GRLD +T+GL+++T+DG+ Sbjct: 63 KVYYILNKPLEVLSSSKDDRGRKTVVDLINC--KERIFPIGRLDYNTSGLIILTNDGELF 120 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TPTQV 174 +RI P+ K Y V + + ++ E GV+L + +T PA + ++ T++ Sbjct: 121 NRIIHPKAEIFKEYYVKVLGEIKENNVELLKNGVELDDG--ITLPANVRILRREKGKTEL 178 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + I EGR QV+RM + + V+ L RE+IG ++L +L GEYR LT +EI + Sbjct: 179 LVAIREGRNRQVRRMMDKINHPVITLRREKIGNLSL-GNLKLGEYRELTNDEINYL 233 >UniRef50_B7L142 Pseudouridine synthase n=9 Tax=Alphaproteobacteria RepID=B7L142_METC4 Length = 674 Score = 247 bits (633), Expect = 1e-64, Method: Composition-based stats. Identities = 68/219 (31%), Positives = 105/219 (47%), Gaps = 5/219 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K IA+ SR A I RVT++G+++ + A + + D PL + R Sbjct: 23 RIAKAIARAGIASRRDAEALIEAGRVTLNGKVLTSPAINVTDSDRITVDDEPLPARERTR 82 Query: 62 YFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 ++L+KP+G V + DP+ PTV L E + ++ A GRLDI+T GL+L+T+DG + Sbjct: 83 LWLLHKPRGVVTTARDPEGRPTVFDGLPEELP-RVVAIGRLDINTEGLLLLTNDGGLAKV 141 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT--I 178 I P + Y V V ++ KG+ + + A L+ V LT + Sbjct: 142 IAHPDTGWLRRYRVRAFGDVTQPDLDKLKKGLTVDGMEYGPIEATLDRAQGDNVWLTLGL 201 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPG 217 EG+ +VKR+ +G V L R G L DL G Sbjct: 202 REGKNREVKRILEHLGLSVNRLIRLSFGPFQL-GDLEVG 239 >UniRef50_A8SIK9 Pseudouridine synthase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SIK9_9FIRM Length = 235 Score = 247 bits (633), Expect = 1e-64, Method: Composition-based stats. Identities = 82/231 (35%), Positives = 131/231 (56%), Gaps = 1/231 (0%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +R+D+F+ SR+ + ++ RV ++G+ +N+ ++ E D + + Sbjct: 3 IRIDRFLCHMGIGSRSEIKKYLKTCRVKLNGKFEKNSNTQVDIEKDEILFDDEIVIYKEF 62 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPV-AWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y MLNKP+ ++ +T D PTVL L+ P +L GRLDIDTTG +++T+DG++S+ Sbjct: 63 TYLMLNKPKDFISATFDTKLPTVLDLLEFPYSNMELFPVGRLDIDTTGFLILTNDGKFSY 122 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 +T+P+ K Y VTL + + E+ G+ E T+ A +E I+ ++ LTIS Sbjct: 123 NVTNPKKKVNKKYFVTLRDEIISEQIEKLENGIYFEKEDFTTENAKVEKISEKEINLTIS 182 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EG++HQVKRM V N VVEL + IG + LD L GEYR +T E+ + Sbjct: 183 EGKFHQVKRMLEYVENEVVELKKVCIGNLNLDDSLKLGEYREITNSELEEI 233 >UniRef50_A5TWE7 Pseudouridine synthase n=10 Tax=Fusobacterium RepID=A5TWE7_FUSNP Length = 234 Score = 247 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 72/237 (30%), Positives = 118/237 (49%), Gaps = 13/237 (5%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQ--QH 58 MR++KF++ SR + I R+TV+G + ++ DG + Sbjct: 1 MRINKFLSTLGIASRRAIDKYIEEGRITVNGNTATT-GMDINENDNIFIDGKKIKTSINE 59 Query: 59 GPRYFMLNKPQGYVCST-DDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 YFMLNKP + S+ DD TV+ + ++ GRLD T+GL+L+T+DG+ Sbjct: 60 EKVYFMLNKPLEVLSSSSDDRGRKTVVDLI--KTDKRIFPIGRLDYMTSGLILLTNDGEL 117 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TPTQ 173 +R+ P+ K Y + + + + ++ KGV L + K T PA + I T Sbjct: 118 FNRVVHPKSEIYKKYYIKILGELKKEEIDELKKGVLLDDGK--TLPAKISGIKYDKNKTS 175 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + ++I EGR Q++RM V+ L RE+IG + L DL G+YR LT++E+ + Sbjct: 176 MFISIREGRNRQIRRMIEKFEYKVLMLRREKIGELAL-GDLPEGKYRELTKQEVEYL 231 >UniRef50_Q21EB0 Pseudouridine synthase n=14 Tax=Gammaproteobacteria RepID=Q21EB0_SACD2 Length = 249 Score = 247 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 91/233 (39%), Positives = 131/233 (56%), Gaps = 5/233 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RLD+FI+ ++R I R+ V+G+ + + +D L Q + P Sbjct: 7 RLDRFISLNSNLNRRDVRLAIAQKRILVNGKHASTIHQVVSQFCHITFDNQTL-QANAPV 65 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y MLNKP G V +T D HPTV+ L + + +H GRLD ++TGL+L+T++G WS + Sbjct: 66 YIMLNKPAGRVSATKDSTHPTVVGCLPQQLQANIHIVGRLDFNSTGLMLLTNNGAWSRHL 125 Query: 122 TSPRHHCEKTYLVTLESPVADDT----AEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT 177 TSP + K Y V LE + DD FA G+ E T+PA LE +T T+ R+T Sbjct: 126 TSPENKVNKIYEVELERTINDDEWPQYISAFASGMYFAFEDLTTQPAKLERLTATRARVT 185 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EGRYHQ+KRMF N V+ LHR ++G + LD L PGE+R L ++EI + Sbjct: 186 LVEGRYHQIKRMFGRFRNKVIALHRTQLGALPLDPALQPGEHRLLNDDEIIKL 238 >UniRef50_B4RM91 Pseudouridine synthase n=8 Tax=Betaproteobacteria RepID=B4RM91_NEIG2 Length = 416 Score = 247 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 65/242 (26%), Positives = 105/242 (43%), Gaps = 18/242 (7%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQ---H 58 RL K +A SR I VTV+G+ K+ P+ V G+ + + Sbjct: 165 RLQKVLAASGVGSRREMEEWINNGWVTVNGKTA-QLGDKVTPDDHVTVKGSIIKLKWADR 223 Query: 59 GPRYFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 PR + K +G + S DDP ++ L + + + A GRLDI+T+GL+++T G+ Sbjct: 224 LPRIILYYKQEGEIVSRDDPQGRVSIFDRLPQAASSRWVAIGRLDINTSGLLILTTSGEL 283 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQF-AKGVQLHNEKDLTKPAVLEVI------- 169 R P E+ Y V + + + +GV L + A +E I Sbjct: 284 VQRFAHPSFEVEREYAVRVLGGLTTEQMRSLTEEGVMLEDGL-----AKVERIYEQGGEG 338 Query: 170 TPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 + I EGR +V+R+F + G V L R G I L L G++ L E+A+ Sbjct: 339 ANKWYNIVIKEGRNREVRRIFESQGLTVSRLVRVAFGPIGLPNRLKRGQFYELNPAEVAN 398 Query: 230 VV 231 ++ Sbjct: 399 IL 400 >UniRef50_B6R892 Pseudouridine synthase n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R892_9RHOB Length = 681 Score = 247 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 65/219 (29%), Positives = 99/219 (45%), Gaps = 3/219 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A+ SR A I RV+V+G ++ AF + + V DG PL + R Sbjct: 38 RIAKAMARAGLCSRREAETWIEAGRVSVNGNVLDTPAFTVTQKDKVYVDGKPLPTRERTR 97 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 ++ +KP+G V + DP+ ++ + ++ GRLDI+T GL+L+T+DG S I Sbjct: 98 LWLFHKPRGTVTTNKDPEGRKTVFDILPKDMPRVVTVGRLDINTEGLLLLTNDGGLSRVI 157 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI--S 179 P + Y V V + + GV + A L+ V LTI Sbjct: 158 ELPATGWLRRYRVRAFGKVTQEQLDALKDGVAIDGVLYGAIEATLDTEKGDNVWLTIGLR 217 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGE 218 EG+ +VKR+ + V L R G L DL GE Sbjct: 218 EGKNREVKRILEHLDLSVNRLIRISFGPFQL-GDLGEGE 255 >UniRef50_C0BLA3 Pseudouridine synthase n=1 Tax=Flavobacteria bacterium MS024-3C RepID=C0BLA3_9BACT Length = 334 Score = 247 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 116/232 (50%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+++I+ SR A I + V+G+ V +K+ V++DG + Sbjct: 101 IRLNRYISNSGVCSRREADIFIAAGSIKVNGKAVVEMGYKVALSDVVSFDG-VVLNPEKR 159 Query: 61 RYFMLNKPQGYVCSTDD-PDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ + S D + L + K+ GRLD +GL+L T+DG+ Sbjct: 160 AYILLNKPKDFDSSATDASQPKSALGLVANATKSKIKPVGRLDKSASGLLLFTNDGELQT 219 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEK-DLTKPAVLEVITPTQVRLTI 178 ++T P++ K Y TL + D E+ KG+ L + + + + +E T+V + I Sbjct: 220 KLTKPKNGFRKIYHATLSKSLKADDLEKVRKGIVLEDGPVRVHEISNIEGSPATEVGIEI 279 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + + +KR+F +G +++L R G+T DL G++R LTE+EI ++ Sbjct: 280 LSAKNNIIKRLFDHLGYELIKLDRVVYAGLT-KKDLPRGQWRTLTEQEIINL 330 >UniRef50_Q04F57 Pseudouridine synthase n=2 Tax=Oenococcus oeni RepID=Q04F57_OENOB Length = 237 Score = 247 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 131/234 (55%), Gaps = 9/234 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K IAQ SR A I +V V+G+I+ K+ + V D + + Sbjct: 6 RLQKRIAQAGVASRRKAEEMIVNGQVKVNGKIITKLGKKVSSDDIVYVDNKKIN-EESFE 64 Query: 62 YFMLNKPQGYVCSTDD-PDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y++LNKP GYV S P+ P+V+ + ++ + GRLD DTTG++L+T+DG+ + + Sbjct: 65 YYLLNKPAGYVSSNRSYPNQPSVIELI--KTKTRIFSVGRLDQDTTGVLLLTNDGELTQK 122 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL----EVITPTQVRL 176 +T P+H ++TY ++ V +D EQ K ++ E + A + + + + + Sbjct: 123 LTHPKHRIKRTYAAWVKGIVNEDEIEQLTKPIRFDGEIYFPQAARILKVDQKRQESLIEI 182 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 TI+EG+ H++K++ +G+ V++L+R+ GIT+ +L G++R L+E+E+ + Sbjct: 183 TIAEGKNHEIKKILDFIGHPVIKLNRDMFDGITI-GNLKKGQHRALSEQEVEKI 235 >UniRef50_A9NFY3 Pseudouridine synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFY3_ACHLI Length = 236 Score = 247 bits (632), Expect = 2e-64, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 117/234 (50%), Gaps = 8/234 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL+ +I++ SR A I R+ V+G ++ V D N + Sbjct: 1 MRLNLYISKTGVASRRGADSLIEHGRIKVNGVTAV-LGMQITKNDVVTLDNNIIEPLEEK 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +LNKP G V +T+ ++ F++ K+ GRLD D+ GL+L+T+DG ++ Sbjct: 60 FYILLNKPVGIVSTTNTAISGNMITFMN--FKEKIFPVGRLDKDSHGLILLTNDGSIVNK 117 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHN----EKDLTKPAVLEVITPTQVRL 176 I + +K Y VTL P D E GV+++N EK +T P++L+ + L Sbjct: 118 ILRVENGHDKEYHVTLNKPYDDYFIETMTSGVEIYNPVAHEKQMTMPSILKPLDERTFSL 177 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 TI +G Q++RM ++G V L R RI +TL DL G +R LT +E+ + Sbjct: 178 TIRQGLNRQIRRMADSLGYRVESLERVRIMHLTL-GDLPVGYWRYLTSDELKEL 230 >UniRef50_D0SB72 Pseudouridine synthase n=5 Tax=Acinetobacter RepID=D0SB72_ACIJO Length = 368 Score = 247 bits (632), Expect = 2e-64, Method: Composition-based stats. Identities = 68/240 (28%), Positives = 113/240 (47%), Gaps = 18/240 (7%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG--- 59 L K +A+ SR I RV+V+G++ ++ P ++ DG ++ Q Sbjct: 5 LQKVLARVGLGSRRYMEEVIAAGRVSVNGQVA-QVGERIEPGDELRIDGRKVSFQIEDEI 63 Query: 60 -PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 R + KP+G +CS +DP+ PTV L + GRLDI++TGL+L T+DG+ Sbjct: 64 RRRVLIYYKPEGEICSRNDPESRPTVFDQLPAIANDRWVMVGRLDINSTGLLLFTNDGEL 123 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT------- 170 ++R+ P + E+ Y V + V KGV L + PA E + Sbjct: 124 ANRLMHPSNEVEREYAVRVMGEVTPQIKNNMLKGVVLDDG-----PAKFESFSEIGGEGI 178 Query: 171 PTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 ++ + EGR +V+R+F + G V L R R G + L +L G + L + +I ++ Sbjct: 179 NRWYQVVVKEGRNREVRRIFESQGLKVSRLLRTRYGTVILPRELRTGRWMELDKNDIDNL 238 >UniRef50_A7HC79 Pseudouridine synthase n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HC79_ANADF Length = 354 Score = 247 bits (631), Expect = 2e-64, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 116/233 (49%), Gaps = 4/233 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHG 59 +RL K++A+ SR A I RV V+ V K+ P D V DG +++ Sbjct: 12 VRLQKYLAEAGVASRRKAEELILAGRVKVNARAVTVLGSKVDPARDLVTVDGRLVSRSET 71 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y++L KP G V + DP+ V ++ + GRLD D G VL TDDG+ ++ Sbjct: 72 RSYYLLYKPPGCVTTASDPEGRPTALEYLRGVKERVFSVGRLDFDAEGAVLFTDDGELAN 131 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAV--LEVITPTQVRLT 177 R+ PR+ +TYLV + E+ GV+L + AV +R+ Sbjct: 132 RLAHPRYGHRRTYLVKVRGEPPPAALERLVAGVRLEDGPARALEAVPHERAERNVWIRVV 191 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EGR+H VKR+ AVG V L+R GGIT++ L PG++RPL E+ ++ Sbjct: 192 VGEGRFHLVKRLCEAVGLQVQRLYRPEFGGITVEG-LRPGQFRPLAPVEVRAL 243 >UniRef50_Q4FVR0 Pseudouridine synthase n=4 Tax=Moraxellaceae RepID=Q4FVR0_PSYA2 Length = 239 Score = 247 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 95/232 (40%), Positives = 139/232 (59%), Gaps = 6/232 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLL-PEHDVAYDGNPLAQQHG 59 MRLDKF+++ +SR + + + VTV+ +++++ + DV + G PL+ G Sbjct: 6 MRLDKFLSKATELSRKESKKILHAGEVTVNEQVIKDPGVHVDIVNDDVQWAGEPLSVATG 65 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 RY +L+KP+G+ C+ ++P V + P L AGRLD+DTTG +L++DDG W H Sbjct: 66 NRYILLHKPEGFECTLKAKEYPIVTDLIAVPELGSLRIAGRLDVDTTGALLISDDGGWLH 125 Query: 120 RITSPRHHCEKTYLVTLESPVADD----TAEQFAKGVQLHNEKDLTKPAVLEVITPTQVR 175 R+TSP+H K Y +TL + D ++ A+G+ L + + TKPA LE I T R Sbjct: 126 RVTSPKHEHAKVYELTLADAMDSDAQANAIKEVAEGILLEGDHEETKPATLEFIDETHAR 185 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 LT+ +G+YHQVKRM GN VVELHR +G ITLD L G+ R LT EE+ Sbjct: 186 LTLEQGKYHQVKRMMGYFGNRVVELHRASVGHITLDG-LEKGDSRFLTPEEV 236 >UniRef50_A1UU09 Pseudouridine synthase n=4 Tax=Bartonella RepID=A1UU09_BARBK Length = 499 Score = 247 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 58/224 (25%), Positives = 101/224 (45%), Gaps = 5/224 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A+ SR A I R+ V+G +V ++P + D P+ R Sbjct: 46 RIAKRLARAGIASRRDAEMMIIAGRIAVNGTVVTTPVLNVIPSDHITVDEIPIPPIERTR 105 Query: 62 YFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 ++ +KP G V + DP+ PTV L + + ++ + GRLDI+T GL+L+T+DG + Sbjct: 106 LWLYHKPSGLVTTNRDPEGRPTVFDNLPKEMP-RVVSVGRLDINTEGLLLLTNDGGLARV 164 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVR--LTI 178 + P + Y V + ++ G+ + + A ++ + V + + Sbjct: 165 LELPLTGWVRKYRVRAHGKIKQSELDKLKNGIAIDGIFYGSIDASIDREQGSNVWLSVAL 224 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPL 222 EG+ ++K A+G V L R G L +DL G R L Sbjct: 225 REGKNREIKNFLGALGLSVNRLIRVSYGPFQL-SDLEEGAVREL 267 >UniRef50_Q1J0B9 Pseudouridine synthase n=5 Tax=Deinococci RepID=Q1J0B9_DEIGD Length = 253 Score = 247 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 77/232 (33%), Positives = 110/232 (47%), Gaps = 9/232 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPL-AQQHGP 60 RL K +A+ SR A I RVTV+G+I ++P+ +V DG + A Sbjct: 7 RLQKRLARAGVASRRAAEDLITAGRVTVNGQIAT-LGRTVMPDDEVRVDGRLIEAPAQES 65 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 F+L KP GYV + D VL + LH GRLD D+ GL+L+T DGQ + Sbjct: 66 VTFLLYKPAGYVTTARDEYGRRNVLSAMPP--IPGLHPVGRLDKDSEGLLLLTTDGQLTL 123 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 +T PR+ EK Y G++L + A +T++ Sbjct: 124 TLTHPRYGHEKAYRAWTAGQPVAAELRVLETGIELADGPARALSARPARGG---ALVTLT 180 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 EGR QV+RM A+G V L R R+GG+ L DL PGEYR L+ ++ ++ Sbjct: 181 EGRNRQVRRMLDAIGYPVHRLLRYRVGGLWL-GDLEPGEYRLLSPRDLHDLL 231 >UniRef50_A0NV51 Pseudouridine synthase n=2 Tax=cellular organisms RepID=A0NV51_9RHOB Length = 520 Score = 246 bits (630), Expect = 3e-64, Method: Composition-based stats. Identities = 64/224 (28%), Positives = 104/224 (46%), Gaps = 5/224 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A+ SR A I RV ++G+++ A + P+ V DG PL + R Sbjct: 104 RIAKVMARVGLCSRREAEVWIENGRVELNGKLLTTPAVTVTPDDKVVVDGQPLPMRERTR 163 Query: 62 YFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 ++ +KP+G V + DP+ PTV L + + ++ GRLDI+T GL+L+T+DG + Sbjct: 164 LWLYHKPRGLVTTNKDPEGRPTVFERLPDDLP-RVLTVGRLDINTEGLLLLTNDGGLARV 222 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT--I 178 + P + Y V V + G+ + A L+ V +T + Sbjct: 223 LELPATGWLRRYRVRAFGKVTQPDLDTLKDGIAIEGVLYGAIEATLDKEQGNNVWMTVGL 282 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPL 222 EG+ +VKR+ +G V L R G L DL G+ R + Sbjct: 283 REGKNREVKRVLEHLGLAVNRLIRLSYGPFQLM-DLPEGDVREI 325 >UniRef50_A5ZYR1 Pseudouridine synthase n=2 Tax=Clostridiales RepID=A5ZYR1_9FIRM Length = 315 Score = 246 bits (630), Expect = 3e-64, Method: Composition-based stats. Identities = 69/231 (29%), Positives = 117/231 (50%), Gaps = 7/231 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +R++K+++ SR A + RVTV G+ + ++ + +V DG P+ + Sbjct: 13 IRINKYLSAAGVCSRREADQLTDAGRVTVAGKEIGT-GERIPADAEVFLDGRPVKAETRQ 71 Query: 61 RYFMLNKPQGYVCSTDD-PDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 + KP+G VCST TV FLD PV +++ GRLD D+ GL+L+T+ G + Sbjct: 72 VLLLFYKPRGIVCSTKKQRQETTVTEFLDYPV--RVYPVGRLDKDSEGLLLLTNQGDLVN 129 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 RI ++ EK Y VT++ + + + + GV + +T+P + + ++ Sbjct: 130 RIMRAGNYHEKEYEVTVDKKITETFIRKMSSGVPILG--TVTRPCTVYKTGDKSFSIILT 187 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +G Q++RM +G HV L R RI +TLD L GEYR + +E + Sbjct: 188 QGLNRQIRRMCEYLGYHVCTLKRIRIMNLTLDG-LKCGEYREICGDEWKKL 237 >UniRef50_Q1MQ05 Pseudouridine synthase n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MQ05_LAWIP Length = 270 Score = 246 bits (630), Expect = 4e-64, Method: Composition-based stats. Identities = 72/242 (29%), Positives = 125/242 (51%), Gaps = 14/242 (5%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVA-YDGNPLA---Q 56 +R++K +A SR + I VT++G+ V + P+ D+ G + + Sbjct: 24 IRINKALANAGVCSRRNVDKYILNGEVTINGKSVTQPGIYIHPDKDIIALHGRRVDIQLK 83 Query: 57 QHGPRYFMLNKPQGYVCSTDDPDHP-TVLYFLDEP-VAWKLHAAGRLDIDTTGLVLMTDD 114 Y + KP + S DP + TVL F+ P ++L+ GRLD + GL+L+T+D Sbjct: 84 NKKYYYLSMYKPIKVISSVKDPQNRLTVLDFIPFPWKNYRLYPVGRLDFFSEGLLLITND 143 Query: 115 GQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP--- 171 G+ + R+T PR+H K Y V + + + T + +KG+ L + L PA + V++ Sbjct: 144 GELTQRLTHPRYHISKVYHVLIRERILNTTLKNISKGITLSDGTKLP-PAKVRVLSSITE 202 Query: 172 ---TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 T + +T+ +G Q++RM +G +++L R + G I L ++L PGE RPL +EI Sbjct: 203 TNTTWLEITLQQGINRQIRRMCKELGLTILKLIRVKQGNINL-SNLQPGEVRPLKNDEIK 261 Query: 229 SV 230 + Sbjct: 262 LL 263 >UniRef50_D2MQD6 Pseudouridylate synthase n=1 Tax=Bulleidia extructa W1219 RepID=D2MQD6_9FIRM Length = 231 Score = 246 bits (629), Expect = 4e-64, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 127/230 (55%), Gaps = 4/230 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLD+ +A SR ++ RV+V+G+I ++ + P DV + + Q Sbjct: 1 MRLDRVLANASVGSRTQVKNMVKNGRVSVNGKIALASSMMVDPNQDVIRIDDEILQYAKY 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 +Y ML KP GY+ +T+ PTVL + P L GRLD DT GL+LMT+DG+ +H Sbjct: 61 QYLMLYKPAGYISATEGRYDPTVLELV--PNYKGLFPCGRLDKDTEGLLLMTNDGRLAHN 118 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 + SP+ H EK Y V + P++ + +G++ N K A L+++ Q + + E Sbjct: 119 LLSPKKHVEKEYYVEHQLPLSQEDVLCIERGIRYKNITY--KGAKLKILDDLQCTIILQE 176 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G+YH++K +F A+ N V L R R+ + LD L GEYRPL+EEEI + Sbjct: 177 GKYHEIKNIFLAIDNKVTYLKRIRMKNLILDETLKKGEYRPLSEEEIGDL 226 >UniRef50_C5CED2 Pseudouridine synthase n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CED2_KOSOT Length = 235 Score = 246 bits (629), Expect = 5e-64, Method: Composition-based stats. Identities = 84/230 (36%), Positives = 133/230 (57%), Gaps = 3/230 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLD F+++ G+SR + + I+ RV V+G +RN FK+ + DGN + G Sbjct: 1 MRLDTFLSRFGGISRRQSRKLIKTGRVEVNGAKIRNPEFKIPENSSIFLDGNRIVPY-GK 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +NKP GYVCS + +V ++E + KL AGRLD ++ GL+L+++DG + H Sbjct: 60 LYIAMNKPVGYVCSKSRTEGLSVYDLINEVFSSKLSIAGRLDKNSRGLLLLSNDGNFVHE 119 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 I SPR EK Y+V +E + + + + V + + + + ++ I + ++E Sbjct: 120 IISPRKKIEKEYIVKVEEKILPEQLQILLQHVDI-GKGEYARAESVQFIDIVTFSIVLTE 178 Query: 181 GRYHQVKRMFA-AVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 G+YH+++RM A+ N+VV+L R RIGG L DL GE+R LTEEEI + Sbjct: 179 GKYHEIRRMVKSALKNNVVDLKRIRIGGYHLPGDLHEGEWRILTEEEIKA 228 >UniRef50_A8U4V7 Pseudouridine synthase n=10 Tax=Lactobacillales RepID=A8U4V7_9LACT Length = 239 Score = 246 bits (629), Expect = 5e-64, Method: Composition-based stats. Identities = 80/236 (33%), Positives = 126/236 (53%), Gaps = 8/236 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 MRLDK + + SR R ++ +V V+G+ + + + P+ +V G P+ Q Sbjct: 1 MRLDKLLFETGFGSRRTVKRLLKSKQVQVNGQTIMVDSLNVDPQLQEVTVAGVPIDYQ-P 59 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFL-DEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y+ML+KP G V + D + TV+ + L GRLD DT GL+L+T++GQ Sbjct: 60 HVYYMLHKPAGVVSAVSDAVNQTVIDLIEPSQRVPGLFPVGRLDKDTEGLLLLTNNGQLG 119 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT----PTQV 174 +++ P+ K Y V + V DD F G+ + KPA L +++ ++V Sbjct: 120 YQLLIPKKEVTKCYEVVVNERVTDDDQLAFTAGIVFDGG-VICKPAQLTILSQSDTESRV 178 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 L ISEG++HQVK+MF +VG V+ L R +G + LD L+ G YRPL EE+ ++ Sbjct: 179 LLEISEGKFHQVKKMFLSVGKKVIYLKRLSMGPLQLDKTLSLGSYRPLHAEELVAL 234 >UniRef50_A8U325 Pseudouridine synthase n=1 Tax=alpha proteobacterium BAL199 RepID=A8U325_9PROT Length = 387 Score = 246 bits (629), Expect = 5e-64, Method: Composition-based stats. Identities = 58/218 (26%), Positives = 103/218 (47%), Gaps = 3/218 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A+ SR A R I RV VDG ++ + A + + + D PL + PR Sbjct: 10 RISKRLARAGLCSRRDAERWIAEGRVKVDGVMLTSPAVNVDDDSVILVDEKPLPEIEPPR 69 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 + +KP G V S DP+ + ++ ++ GRLDID+ GL+L+T+DG + + Sbjct: 70 LWRYHKPDGLVTSNRDPEGRSTVFDRLPKDLPRVVTVGRLDIDSEGLLLLTNDGGLARYL 129 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI--TPTQVRLTIS 179 P + Y V + P+ + + KGV++ + ++ T + + + + Sbjct: 130 ELPSTGWVRRYRVRVFGPLDEAKLDNLKKGVRIEGVEYGPIEVTIDKATRTNSWLTVALR 189 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPG 217 EG+ +++R+ VG V L R G L ++ PG Sbjct: 190 EGKNREIRRVMEHVGLTVSRLIRTTYGPFQL-GEVPPG 226 >UniRef50_P45104 Ribosomal large subunit pseudouridine synthase B n=177 Tax=Gammaproteobacteria RepID=RLUB_HAEIN Length = 357 Score = 246 bits (628), Expect = 6e-64, Method: Composition-based stats. Identities = 70/237 (29%), Positives = 106/237 (44%), Gaps = 10/237 (4%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLL--PEHDVAYDGNPL----AQ 56 L K +A+ SR I RV+V+G+I ++ V DG + Q Sbjct: 78 LQKVLARAGQGSRREIETMIAAGRVSVEGKIAT-LGDRIDVHSGVKVRIDGQIINLSHTQ 136 Query: 57 QHGPRYFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDG 115 + R M KP+G +C+ DP+ TV L + A GRLDI+T+GL+L T DG Sbjct: 137 KEICRVLMYYKPEGELCTRSDPEGRATVFDRLPRLTGSRWIAVGRLDINTSGLLLFTTDG 196 Query: 116 QWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLE--VITPTQ 173 + ++R+ P E+ Y V + V D + KGVQL + K V Sbjct: 197 ELANRLMHPSREVEREYSVRVFGQVDDAMLARLRKGVQLEDGLANFKEIKFTGGVGINQW 256 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +T+ EGR +V+R++ + G V L R R G I L L G + + E + + Sbjct: 257 YDVTLMEGRNREVRRLWESQGIQVSRLIRIRYGNIKLMKGLPRGGWEEMDLENVNYL 313 >UniRef50_A9MDW0 Pseudouridine synthase n=43 Tax=Rhizobiales RepID=A9MDW0_BRUC2 Length = 611 Score = 246 bits (628), Expect = 6e-64, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 102/223 (45%), Gaps = 3/223 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A+ SR A I R+ V+G+++ + A + + DG PL Q R Sbjct: 105 RIAKRLARAGIASRREAETMIATGRIAVNGKVLESPAVNVKRTDIITVDGKPLRQTERTR 164 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 ++ +KP G V + DP+ ++ P ++ + GRLDI+T GL+L+T+DG S + Sbjct: 165 LWLYHKPAGLVTTNRDPEGRPTVFEALPPEMPRVLSVGRLDINTEGLLLLTNDGGLSRVL 224 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI--S 179 P + Y V V ++ G+ + + A LE + V ++I Sbjct: 225 ELPSTGWLRRYRVRAHGKVTQQQLDELKNGIAVDGVFYGSVEAELERVQGANVWISIGLR 284 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPL 222 EG+ +VK + A+G V L R G L DL G R + Sbjct: 285 EGKNREVKNILGALGLTVGRLIRVSFGPFQL-GDLEEGAVREI 326 >UniRef50_A3JIZ1 Pseudouridine synthase n=1 Tax=Marinobacter sp. ELB17 RepID=A3JIZ1_9ALTE Length = 367 Score = 246 bits (628), Expect = 6e-64, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 105/236 (44%), Gaps = 8/236 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG-- 59 R+ K +A+ SR + R+ V+G+ V K DG L Sbjct: 58 RIQKLLARAGVGSRREIEGWMDAGRLLVNGKPVT-PGQKATVSDVFELDGKRLEVAAAAE 116 Query: 60 --PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQ 116 R + NKP+G V + DP+ PTV L + + GRLD++TTGLV+ T DG+ Sbjct: 117 VLRRVLIYNKPEGEVTTRKDPEGRPTVFDRLPRLREHRWISIGRLDLNTTGLVMFTTDGE 176 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT--PTQV 174 ++R+ P ++ Y V + V D E+ GV L + + T Sbjct: 177 LANRLMHPSSEIDREYAVRIFGEVDDAMIERLRTGVTLEDGEAKFSDISAAGGTGMNRWF 236 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +T+ EGR +V+R++ + G V L R R G I L + L G++ L ++ + + Sbjct: 237 HVTLLEGRNREVRRLWESQGVRVSRLKRVRYGSIFLPSRLTVGKWEELDQKAVDLL 292 >UniRef50_C6VP86 Pseudouridine synthase n=4 Tax=Lactobacillaceae RepID=C6VP86_LACPJ Length = 246 Score = 246 bits (628), Expect = 7e-64, Method: Composition-based stats. Identities = 76/237 (32%), Positives = 120/237 (50%), Gaps = 8/237 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR+DKF+ +R R I+ +T +GE V + ++ P D + + + Sbjct: 1 MRVDKFLHAMRIGTRTQVRRLIKDGHITANGEPVISGKQQINPGSDTVFLDDVQVRYQQY 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLD-EPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y+++NKP G + +T D TV+ + L GRLD DT G++++T+DG SH Sbjct: 61 FYYVMNKPVGVITATTDSAAKTVMDLFNTTDFRDDLFPVGRLDKDTEGILVITNDGALSH 120 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI------TPTQ 173 + SP HH K Y + + F G+ L + +L +PA E++ T Sbjct: 121 DLLSPNHHVTKVYEAEVTGEITAAQLANFNDGITLKDGTEL-QPAQAEIVQFHEIENFTT 179 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +R+ I EG+YHQVKRM +G VV L R + G +TL L G YR LT++E+ ++ Sbjct: 180 IRIMIHEGKYHQVKRMVGTLGERVVGLRRIKFGSLTLPVGLLAGNYRALTDDELTAL 236 >UniRef50_UPI0001745920 putative pseudouridylate synthase n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI0001745920 Length = 235 Score = 246 bits (628), Expect = 7e-64, Method: Composition-based stats. Identities = 93/222 (41%), Positives = 131/222 (59%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 M L + IA+ G+ R A + I G RV V+ ++V + ++ V D + + Sbjct: 1 MFLSRLIARHKGMGRTAAMQAIAGKRVKVEDQVVTDGQHEVDRFSTVWLDDTLVQEGESA 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y ML+KP GY+ +T DP HPTV+ +D P LH AGRLD ++GL+L+T+DG+WS R Sbjct: 61 LYIMLHKPVGYLSATRDPQHPTVIDLIDHPARETLHIAGRLDRSSSGLLLLTNDGRWSRR 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +T P +K YLV P+A + E FAKG H E T PA L ++ R+T+ E Sbjct: 121 LTEPGEKVDKVYLVETAEPIAPEAVELFAKGFYFHTEDLTTLPAELGILGERLARVTLHE 180 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPL 222 GRYHQ+KRMF VGN V+ LHRE IG + L +L PG++R + Sbjct: 181 GRYHQIKRMFHRVGNRVISLHRESIGSLVLPVELFPGQWREI 222 >UniRef50_A7HJ83 RNA-binding S4 domain protein n=3 Tax=Thermotogaceae RepID=A7HJ83_FERNB Length = 245 Score = 245 bits (627), Expect = 9e-64, Method: Composition-based stats. Identities = 80/233 (34%), Positives = 139/233 (59%), Gaps = 6/233 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RLDKF++ +R + I+ RV+V+ EI+RN F + + + DGN + + H Sbjct: 15 IRLDKFLSNAHIGTRNEVKKIIKEGRVSVNFEIIRNPDFHVKLDDIIELDGNRI-EPHKN 73 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y + +KP G+V +T D + P+VL +D P +LH AGRLD D GL+++T+DG+++H Sbjct: 74 VYIIFHKPSGFVSTTSDRE-PSVLNLIDHPYLNELHIAGRLDKDVEGLLILTNDGEFTHN 132 Query: 121 ITSPRHHCEKTYLVTLES--PVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 + SP+ H EK Y + + V + + ++G++L + T P + ++ + LTI Sbjct: 133 LISPKKHIEKEYWIYTKENVEVTQNMVKMVSEGIELE-KGTKTLPGKIRKVSEKIISLTI 191 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 EG+YHQVK+M ++G ++ R RIG +TL+ L G+++ L++EEI+ + Sbjct: 192 VEGKYHQVKKMCISLGIEWEKIVRVRIGNLTLEG-LEKGKWKELSKEEISKFI 243 >UniRef50_Q73PC4 Pseudouridine synthase n=1 Tax=Treponema denticola RepID=Q73PC4_TREDE Length = 234 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 123/232 (53%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL ++A+ SR + I RV+VDG+I+ K+ + + DG + + Sbjct: 5 IRLQVYLARCGVASRRASENLILNGRVSVDGKIITELGIKVSGKEKICLDGKQIFPEAEK 64 Query: 61 RYFMLNKPQGYVCS-TDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 RY +LNKP+GYVCS D+ D P L + +L+ GRLD+ + G +L T+DG +S Sbjct: 65 RYILLNKPEGYVCSLADEKDRPIAASLLKDTYTERLYNIGRLDMLSGGAILFTNDGDFSA 124 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 ++ P EK Y V D+ ++F +GV++ K E I+ ++R+ + Sbjct: 125 KVEHPSSEIEKEYEVITVFEYPDEILQKFLRGVRIEGV--FYKALSAERISKNKMRIVLI 182 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 EG+ +++R+ + +L R RIG + L ADL G++RPLT EEI ++ Sbjct: 183 EGKNREIRRVLKFFNIKIKKLTRVRIGCVYL-ADLPSGKHRPLTSEEIKGLL 233 >UniRef50_Q31GA0 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q31GA0_THICR Length = 317 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 64/239 (26%), Positives = 116/239 (48%), Gaps = 11/239 (4%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQ----QH 58 L K +A+ SR + I V V+G++ + P + + + + + Sbjct: 20 LQKILARGGFGSRREVEKLISQGLVKVNGKVAT-LGDRAFPTDTLKVNDQLVKETRLEKQ 78 Query: 59 GPRYFMLNKPQGYVCSTDD-PDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 + + NKP+G VCS D T+ L + + + GRLDI+T+GL+++T++G+ Sbjct: 79 PTQVILYNKPEGQVCSRKDEKGRETIFTSLPRIINSRWISVGRLDINTSGLLILTNNGEL 138 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHN-----EKDLTKPAVLEVITPT 172 ++R+ P + E+ Y V + V+D+ ++ KGV+L + E P E Sbjct: 139 ANRLMHPSYEMEREYSVRVFGEVSDEILDRLKKGVKLEDGFAKFESIGKIPQQEEDSINQ 198 Query: 173 QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 R+ I EGR +V+R++ + G V L R R G +L +L G+ PLT ++I ++ Sbjct: 199 WYRVVIKEGRNREVRRIWESQGVQVSRLVRTRYGQFSLPRNLRRGKSEPLTWKQINQLL 257 >UniRef50_UPI0001BC42E2 ribosomal small subunit pseudouridine synthase A n=3 Tax=Fusobacterium RepID=UPI0001BC42E2 Length = 235 Score = 244 bits (623), Expect = 2e-63, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 127/230 (55%), Gaps = 4/230 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR+DKF+ + SR ++ ++ V+G + + + E D Y G Sbjct: 1 MRIDKFLVECGVGSRKEVKELLKSRKIRVNGLFITSPKENIEEEKDEVYYGEKKLSYQEF 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWSH 119 RY++L+K GYV + +D TV+ L E V K L GRLD DT GL+L T+DG+ +H Sbjct: 61 RYYILHKKAGYVTALEDSREATVMDLLPEWVIKKDLAPVGRLDKDTEGLLLFTNDGKLNH 120 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 R+ SP+ H +KTY +LE + ++ E+ +GV + + T PA E + ++ LTI Sbjct: 121 RLLSPKSHVDKTYHASLECDITEEALEKLREGVMI--GEYKTLPAKAEKLEDRKIALTIR 178 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 EG++HQVK+M AVGN V+ L R G + L DL GE + ++ E+I S Sbjct: 179 EGKFHQVKKMLEAVGNKVIYLKRISFGKLVL-GDLELGEVKEVSLEDIIS 227 >UniRef50_D1R854 Pseudouridine synthase n=4 Tax=Chlamydiales RepID=D1R854_9CHLA Length = 261 Score = 244 bits (623), Expect = 2e-63, Method: Composition-based stats. Identities = 67/225 (29%), Positives = 112/225 (49%), Gaps = 3/225 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K +A SR I VTV+GE+ + + G + ++ Sbjct: 34 RLSKVMAAAGVASRRACEMLIFDGCVTVNGEVTLVPQTLVDENDVITCKGQSVGKKQNKV 93 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y++LNKP GY+CS ++ L + V +L GRLD DT+GL+++T+DG +++R+ Sbjct: 94 YYILNKPIGYICSNKRNKDSKIVLDLFDTVEERLFTVGRLDKDTSGLIIVTNDGHFANRV 153 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEG 181 P + K YLV V + + G + EK +P + + +++TI+EG Sbjct: 154 IHPSANIHKEYLVKTNEEVEAEHLSALSSGTLV--EKTFVRPIRVSKVRRGTLKITIAEG 211 Query: 182 RYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 + +++ + + V+EL R RIGG+ L L PGE+R +T E Sbjct: 212 KKREIRLLMESAKLPVLELTRIRIGGLHL-GPLQPGEWREMTARE 255 >UniRef50_A3UFV9 Pseudouridine synthase n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UFV9_9RHOB Length = 354 Score = 243 bits (622), Expect = 3e-63, Method: Composition-based stats. Identities = 62/219 (28%), Positives = 101/219 (46%), Gaps = 3/219 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A SR A R I RV+V+GEI+R AFK++ DV DG + Q+ R Sbjct: 18 RIAKVLAHAGIASRREAERLIEKGRVSVNGEILRTPAFKVMAGDDVRVDGESIGQRPPTR 77 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 + +KP G + + DP ++ ++ + GRLD+++ GL+L+T+DG+ + + Sbjct: 78 VWRYHKPVGLLTTHSDPQGRDTVFQTLPQDMGRVISVGRLDLNSEGLLLLTNDGELARVL 137 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT--IS 179 P + Y V +D + G + ++ T V LT I Sbjct: 138 ELPSTGWTRRYRVRAYGNASDKALAELENGTVVDGVVYGPVEVTVDRRTGANVWLTVGIK 197 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGE 218 EG+ +V+++ +VG V L R G L L GE Sbjct: 198 EGKNREVRKVLQSVGLTVNRLMRVAYGPFQL-GSLKRGE 235 >UniRef50_Q3AVD5 Pseudouridine synthase n=3 Tax=Cyanobacteria RepID=Q3AVD5_SYNS9 Length = 247 Score = 243 bits (622), Expect = 3e-63, Method: Composition-based stats. Identities = 80/236 (33%), Positives = 121/236 (51%), Gaps = 10/236 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 RL K +A SR ++ RVTVDG + + + P + DG PL P Sbjct: 5 RLQKLMAAAGLCSRRRGEDWLQAGRVTVDGRVA-SLGDQADPNSQLIEVDGVPLISVQEP 63 Query: 61 RYFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 R F+LNKP G +CS DP TVL L LH GRLD D+ G +L+TD G+ + Sbjct: 64 RVFLLNKPVGVICSCRDPQGRATVLDCLPHQERSGLHPVGRLDADSRGALLLTDQGELTL 123 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT----PTQVR 175 R+T PR++ KTY V + + ++ G+ L LT+PA + + + + Sbjct: 124 RLTHPRYNHAKTYRVLVRGIPSSQALRRWRDGLLLDG--RLTRPARVHCLRSRGASSLLE 181 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 + + EGR Q++R+ +G+ V++L R I GI LD DLA G +R L E ++++ Sbjct: 182 VELKEGRNRQIRRVAELLGHPVIDLQRVAIDGIRLD-DLAEGCWRRLDAREWSTIL 236 >UniRef50_B7VP37 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=B7VP37_VIBSL Length = 241 Score = 243 bits (622), Expect = 3e-63, Method: Composition-based stats. Identities = 102/229 (44%), Positives = 152/229 (66%), Gaps = 3/229 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDK++ + +++ A + I+ V+V+ +V + + ++ + + +G+ L + Sbjct: 10 MRLDKYLCKSTELTKLEAVQRIQNGEVSVNSVVVLDESTQVHESNAILLNGDALTLRE-F 68 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 RY +++KP G +CS D +P++ +L+ A +LH AGRLD DTTGLVL+TDDG+WS Sbjct: 69 RYILMHKPAGTICSNIDEVYPSLFNYLELEKASELHIAGRLDADTTGLVLITDDGRWSFN 128 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 IT P C+K Y V L + DD A++F G+QL E+ LT+PA LEVIT +V LTI+E Sbjct: 129 ITLPTKSCKKVYRVILSRDIKDDVADKFKAGIQLQGEQKLTRPAELEVITSKEVLLTITE 188 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 G++HQVKRMFAAVGN VV LHRE+IG + L D+ G++R LT+ E+ S Sbjct: 189 GKFHQVKRMFAAVGNRVVGLHREQIGDVRL--DVEAGQWRYLTKAEVDS 235 >UniRef50_Q01Z61 Pseudouridine synthase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Z61_SOLUE Length = 264 Score = 243 bits (622), Expect = 3e-63, Method: Composition-based stats. Identities = 79/233 (33%), Positives = 132/233 (56%), Gaps = 9/233 (3%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGPR 61 L++ ++ SR A + I G +V V+G++V N + P+HD V +G PL Sbjct: 16 LERVFSKAGAGSRTDARKWISGGKVRVNGKVVLNPDHWVDPDHDKVTLEGKPLKAAT-KS 74 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y +L KP+GY+ + DP+ +Y L V L GRLD+DT+GL+++T+D ++ RI Sbjct: 75 YILLYKPKGYLTTYRDPEGRPTVYALLGDVGKWLSPVGRLDLDTSGLLVLTNDNDFAERI 134 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP----TQVRLT 177 T+P H KTY + + ++D+ E+ GV+L + T+PA ++ + T + +T Sbjct: 135 TNPEHKVPKTYQIKAATVLSDEQIERLRAGVELSDGP--TRPAEVKRLRDGPKHTFLEMT 192 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I+EGR QV+RM AV + V +L R IG + + +L G++R LT +E+ + Sbjct: 193 ITEGRNRQVRRMLEAVESKVSKLVRTAIGPVRI-GELPIGKWRNLTADEVHEL 244 >UniRef50_B9JSE7 Ribosomal large subunit pseudouridine synthase B n=4 Tax=Alphaproteobacteria RepID=B9JSE7_AGRVS Length = 704 Score = 243 bits (622), Expect = 3e-63, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 99/223 (44%), Gaps = 5/223 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A+ SR R I RV V+G+++ + + DG P+ R Sbjct: 84 RISKLLARAGIASRRDVERMIMEGRVAVNGKVLDSPVLNATLADRIEVDGEPIRGIERTR 143 Query: 62 YFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 ++ +KP G V + DP+ PTV L E + ++ + GRLDI+T GL+L+T+DG + Sbjct: 144 LWLYHKPSGLVTTNSDPEGRPTVFDNLPEELP-RVMSIGRLDINTEGLLLLTNDGGLARV 202 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT--I 178 + P + Y V + + G+ + AVL+ V +T + Sbjct: 203 LELPTTGWLRRYRVRAYGEIDQAKLDTLKDGIAVDGVLYGAIDAVLDRSQGHNVWITMGL 262 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRP 221 EG+ ++K + A+G V L R G L DL + + Sbjct: 263 REGKNREIKNVLGALGLEVNRLIRISYGPFQL-GDLPESQVQE 304 >UniRef50_D0BMY5 Pseudouridine synthase n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BMY5_9LACT Length = 237 Score = 243 bits (622), Expect = 3e-63, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 123/234 (52%), Gaps = 5/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL+ + + +SR + I V +D + + + P+ V + + Sbjct: 1 MRLEHLLMKHFDISRKQMKKLISSGEVLIDSTPATHVSNNVDPQIQVITVQGSRMEDNSQ 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 +Y++LNKP+G + +T D PTV+ L+ GRLD DT GL+++T++G +R Sbjct: 61 KYYLLNKPKGVITATTDSQLPTVIDLFKNENIEGLYPIGRLDRDTEGLLIITNNGPLGYR 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP----TQVRL 176 + +P H EK Y V + P+ + ++F G+ H+ + KPA L ++ ++ + Sbjct: 121 LLNPIQHIEKEYYVEVNGPLDNSCIQRFYDGIMFHDG-TICKPAKLSILESSPSFSKATV 179 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 TISEG++HQ+K+MF VG V L R R G LD L+PGEYRPL E+ + Sbjct: 180 TISEGKFHQIKKMFLCVGVKVTFLKRIRFGEFLLDESLSPGEYRPLNFSELQIL 233 >UniRef50_Q8X4Q8 Ribosomal large subunit pseudouridine synthase B n=117 Tax=Bacteria RepID=RLUB_ECO57 Length = 290 Score = 243 bits (621), Expect = 4e-63, Method: Composition-based stats. Identities = 69/230 (30%), Positives = 108/230 (46%), Gaps = 10/230 (4%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKL--LPEHDVAYDGNPLAQQHGP 60 L K +A+ SR I RV+VDG+I + ++ P + DG+ ++ + Sbjct: 5 LQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISVRESA 63 Query: 61 ----RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDG 115 R KP+G +C+ +DP+ PTV L + + A GRLD++T GL+L T DG Sbjct: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 Query: 116 QWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT--PTQ 173 + ++R+ P E+ Y V + V D ++GVQL + K Sbjct: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLT 223 +T++EGR +V+R++ AVG V L R R G I L L G + L Sbjct: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELD 233 >UniRef50_Q0VQK2 Pseudouridine synthase n=2 Tax=Alcanivorax RepID=Q0VQK2_ALCBS Length = 248 Score = 243 bits (621), Expect = 4e-63, Method: Composition-based stats. Identities = 91/225 (40%), Positives = 134/225 (59%), Gaps = 1/225 (0%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RLD+F++ +L +SR+ + RV V+G++ R+ ++ V DG + Q + PR Sbjct: 14 RLDRFLSARLQMSRSNLRLLLAAGRVRVNGQVERDRQRRIGLFDAVVCDGE-ILQANRPR 72 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y M+NKP G V +T D HPTVL L LH AGRLD ++TGLVL+T+DG WS R+ Sbjct: 73 YLMINKPAGVVSATRDEHHPTVLELLPRGQREGLHLAGRLDFNSTGLVLLTNDGAWSRRL 132 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEG 181 + P K Y V+++ P++D+ F++ + E+ T+PA L + + + + + EG Sbjct: 133 SLPETGLWKHYRVSVDKPLSDEDVVSFSQRMWFDFEQIYTQPARLTIRSSFEADVWLHEG 192 Query: 182 RYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 +YHQ+KRMF G V LHR +G I LDA LAPGE R LT+ E Sbjct: 193 KYHQIKRMFGRTGKKVTALHRLAVGRIQLDAYLAPGESRELTQAE 237 >UniRef50_C1XNC4 Pseudouridine synthase n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XNC4_MEIRU Length = 257 Score = 243 bits (621), Expect = 4e-63, Method: Composition-based stats. Identities = 94/232 (40%), Positives = 120/232 (51%), Gaps = 5/232 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEH-DVAYDGNPLAQQHGP 60 RLDK + SR R R +T++G+IV +A FK P + G PL Q Sbjct: 20 RLDKVLGHLGVGSRKEIHRLARAGLITINGKIVADAGFKFDPSQAHIEVAGEPLVYQ-KF 78 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPV-AWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP GY+ ST DP + L E GRLD DT GL+L+T DG+ H Sbjct: 79 FYLLLNKPAGYITSTKDPSGTPITALLPEEFWRNDWMPVGRLDKDTEGLLLLTTDGELLH 138 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI-TPTQVRLTI 178 R+T PR K Y V L SP + FA G L E + +PA L + P +V L + Sbjct: 139 RLTHPRWKVTKRYYVELASPATPEDVAVFAAG-TLELEGEPLQPAELYLGPDPRKVELVL 197 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EGR+HQVKRMFAA GN V L R G + L +L PG R LT +EI ++ Sbjct: 198 REGRFHQVKRMFAARGNQVTYLKRLAFGPLQLPPNLPPGASRQLTPDEIKAL 249 >UniRef50_C2KPR0 Pseudouridine synthase n=3 Tax=Mobiluncus RepID=C2KPR0_9ACTO Length = 278 Score = 242 bits (620), Expect = 5e-63, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 111/232 (47%), Gaps = 3/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL K ++Q SR + I+ RV VDGE V K+LP + +G + Sbjct: 42 VRLQKLLSQAGVASRRASEDLIKRGRVQVDGETVTEMGLKVLPSARITVNGQRIHTDAAL 101 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 + + NKP G V + D L + ++ GRLD+ T GL+L+T++G ++R Sbjct: 102 QVWAFNKPVGTVSTMQPEDDRPCLGDWATKLPQRVFHVGRLDVATAGLILLTNNGDLANR 161 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI--TPTQVRLTI 178 + PR+ KTY+ ++ V + +GV+L + L + + V+LT+ Sbjct: 162 LVHPRYEVPKTYVAMVQGQVKPGLGKVLRRGVELEDGVTKVDTFKLVEVRRGSSIVQLTL 221 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G+ V+R+ + VG+ V L R IG + L DL G +R LT ++ + Sbjct: 222 HSGKNRVVRRLLSEVGHPVSALTRTAIGTLRL-GDLKEGHFRLLTGSDLVKL 272 >UniRef50_B8KTF1 Pseudouridine synthase n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KTF1_9GAMM Length = 311 Score = 242 bits (620), Expect = 5e-63, Method: Composition-based stats. Identities = 94/223 (42%), Positives = 129/223 (57%), Gaps = 2/223 (0%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RLDK +++Q GV R + RVT+DG + R+AA + P +A DG L P Sbjct: 91 RLDKHLSKQTGVPRKAVRLMLAQARVTIDGVLARDAAEVINPFSRIAVDGVGLPTNT-PH 149 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y MLNKP G VC+T D H TV+ LD P LH GRLDI +TGLVL+T+DGQWS R+ Sbjct: 150 YIMLNKPSGVVCATRDARHRTVIDILDLPFQHTLHIVGRLDIQSTGLVLLTNDGQWSRRL 209 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEG 181 + P+ K Y VT E + + F G+ E T+PA L +I + +T++EG Sbjct: 210 SLPQSKFAKHYRVTTEQAITSEQIAGFEAGIFFAYEGLTTRPARLHLINSHEANVTLTEG 269 Query: 182 RYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTE 224 RYHQ++RMF GN V+ +HR G L ++L PG+YR ++ Sbjct: 270 RYHQIRRMFGRYGNRVLSIHRYATGPYVL-SNLRPGQYREISP 311 >UniRef50_B2HUK5 Pseudouridine synthase n=9 Tax=Gammaproteobacteria RepID=B2HUK5_ACIBC Length = 307 Score = 242 bits (620), Expect = 5e-63, Method: Composition-based stats. Identities = 68/240 (28%), Positives = 113/240 (47%), Gaps = 18/240 (7%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG--- 59 L K +A+ SR I RV+V+G I ++ P ++ DG + Q Sbjct: 5 LQKVLARIGLGSRRYMEEVIAAGRVSVNGRIA-QVGERIEPGDELRIDGRKVQFQIEDEI 63 Query: 60 -PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 R + KP+G +CS +DP+ PTV L + + GRLDI++TGL+L T+DG+ Sbjct: 64 RRRVLIYYKPEGEICSRNDPEKRPTVFDHLPQIANDRWVMVGRLDINSTGLLLFTNDGEL 123 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT------- 170 ++R+ P + E+ Y V + V + GV+L + PA E + Sbjct: 124 ANRLMHPSNEIEREYAVRVMGEVTPQLRQNMVNGVELEDG-----PAKFESFSEIGGEGI 178 Query: 171 PTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 ++ + EGR +V+R+F + G V L R R G + L +L G + L + +I ++ Sbjct: 179 NRWYQVVVKEGRNREVRRIFESQGLKVSRLLRTRYGTVILPRELRTGRWMELDKTDIDNL 238 >UniRef50_Q13BM8 Pseudouridine synthase n=55 Tax=Alphaproteobacteria RepID=Q13BM8_RHOPS Length = 795 Score = 242 bits (620), Expect = 5e-63, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 107/230 (46%), Gaps = 10/230 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A+ SR A I RV V+G ++ + A + + DG PL ++ R Sbjct: 477 RIAKVVARAGLCSRRDAEAWIVEGRVAVNGRVIDSPALDVTYSDVITVDGKPLPERERTR 536 Query: 62 YFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 F+ +KP+G + + DP+ PTV L E + +L + GRLD +T GL+L+T+DG + Sbjct: 537 LFLYHKPRGLMTTHADPEGRPTVFDNLPEDLP-RLISIGRLDFNTEGLLLLTNDGGLARA 595 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT--I 178 + P + Y V V +Q A GV++ K A LE V L I Sbjct: 596 LELPETGWLRRYRVRAHGEVTQAQLDQLASGVEVDGVKYGPIEAKLERDQGANVWLVFAI 655 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 EG+ +V+ + A +G V L R G L ++ G+ EE+ Sbjct: 656 REGKNREVRNVLAHLGLEVNRLIRVSYGPFQLL-EIEEGQV-----EEVK 699 >UniRef50_B0T1Z8 Pseudouridine synthase n=1 Tax=Caulobacter sp. K31 RepID=B0T1Z8_CAUSK Length = 501 Score = 242 bits (619), Expect = 7e-63, Method: Composition-based stats. Identities = 61/238 (25%), Positives = 106/238 (44%), Gaps = 10/238 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A+ SR R I RV ++GE++ A K+ P + DG + + R Sbjct: 25 RVAKMLARAGVASRRAVERLIEDGRVALNGEVLTTPAIKVRPGDILTVDGKMIDEPEATR 84 Query: 62 YFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 F +KP G + + +DP PTV L + +L + GRLD+++ GL+L+T+DG S Sbjct: 85 VFRYHKPSGLMTTHNDPKQRPTVFQALPRDLP-RLISVGRLDLNSEGLLLLTNDGALSRA 143 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT-------Q 173 + P++ + Y ++ G + + A L+ Sbjct: 144 LEMPQNAWVRRYRARAFGDTTQAKLDKLKDGCTVEGVRYGPIEARLDKAQEKAGGGKNIW 203 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 + LT+SEG+ +V+R+ ++G V L R G L L PG+ + I ++ Sbjct: 204 ITLTLSEGKNREVRRVLESIGLKVNRLIRLSYGPFAL-GTLLPGQVEEVGPRVIRELL 260 >UniRef50_D0J8G4 Pseudouridine synthase, Rsu n=96 Tax=Bacteria RepID=D0J8G4_COMTE Length = 642 Score = 242 bits (618), Expect = 8e-63, Method: Composition-based stats. Identities = 72/250 (28%), Positives = 112/250 (44%), Gaps = 28/250 (11%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +R++K IA SR A + VTV+GE+ ++P + D +Q Sbjct: 395 VRINKRIADMGMCSRREADEWVENGWVTVNGEVAT-MGQNVVPGDRIEIDQKAQERQDQQ 453 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK---------------LHAAGRLDIDT 105 +LNKP GYV + H + + W L GRLDID+ Sbjct: 454 VTILLNKPMGYVSGQAEDGHEPAVVLITNENRWNEDRSKTRFNFSQLKGLAPCGRLDIDS 513 Query: 106 TGLVLMTDDGQWSHRITSPRHHCEKTYLVTL---------ESPVADDTAEQFAKGVQLHN 156 GL+++T DG+ + +I +K YLV + +S ++ G+ L Sbjct: 514 VGLLVLTQDGRVARQIIGEDSEVDKEYLVRVTFGDRDVDVQSVFPEEKLALLRHGLSLD- 572 Query: 157 EKDLTKPAVLEVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAP 216 + KPA ++ P Q+R ++EG+ Q++RM VG VV L R RIGG+TL +L Sbjct: 573 -EQPLKPAQVDWQNPEQLRFVLTEGKKRQIRRMCEQVGLKVVGLKRIRIGGVTL-GNLPT 630 Query: 217 GEYRPLTEEE 226 G++R L E Sbjct: 631 GQWRYLAPHE 640 >UniRef50_A8I6C3 Pseudouridine synthase n=6 Tax=Alphaproteobacteria RepID=A8I6C3_AZOC5 Length = 717 Score = 242 bits (618), Expect = 9e-63, Method: Composition-based stats. Identities = 65/218 (29%), Positives = 108/218 (49%), Gaps = 3/218 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K IA+ SR I RV+V+GE++ + AF + E ++ DG PL ++ R Sbjct: 31 RIAKVIARAGLGSRREIEEWITAGRVSVNGEVLASPAFTVTAEDEIRVDGEPLPERERTR 90 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 F+ +KP G V + DP+ T L+ L +L + GRLDI++ GL+L+T+DG + + Sbjct: 91 LFLYHKPIGVVTTNRDPEGRTTLFELLPGHLPRLVSVGRLDINSEGLLLLTNDGGLARVL 150 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT--IS 179 P + Y V + V + KG+ + + AVL+ + V +T + Sbjct: 151 ELPETGWLRRYRVRAKGTVDQAQLDALIKGIVVEGVEYGPIEAVLDRVQGANVWITVALR 210 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPG 217 EG+ +V+ + A+G V L R G L ++A G Sbjct: 211 EGKNREVRNVLGALGLQVNRLIRISYGPFQL-GEIAEG 247 >UniRef50_A6LLC7 RNA-binding S4 domain protein n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LLC7_THEM4 Length = 230 Score = 242 bits (618), Expect = 9e-63, Method: Composition-based stats. Identities = 77/224 (34%), Positives = 125/224 (55%), Gaps = 4/224 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF++ SR R I+ V ++GEI+ N FK+ V + P+ H Sbjct: 1 MRLDKFLSNAKVGSRKEVKRLIKFGIVKINGEIITNVDFKVKENDIVTVNNTPITPYHN- 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y + NKP GY S + + + F+D P LH AGRLD D GL+L+T+DG ++H+ Sbjct: 60 VYIIFNKPTGYTSSKSEFER-NIFEFIDHPYVENLHIAGRLDKDVEGLLLITNDGIFTHK 118 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 ITSP+ EK Y+V ++ ++D+ ++ G+ L N KPA+++ + + +TI+E Sbjct: 119 ITSPKSKIEKEYIVKVDKEISDEMIQKAKDGIVLKNG-TRFKPAIIKRLKDNFISITITE 177 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITL-DADLAPGEYRPLT 223 G+YH++K + +G ++ R RIG + L D +L GE+ + Sbjct: 178 GKYHEIKLIVKFLGLSYKKIERIRIGKLKLEDFNLKRGEWSEID 221 >UniRef50_Q73PD9 Pseudouridine synthase n=1 Tax=Treponema denticola RepID=Q73PD9_TREDE Length = 245 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 92/241 (38%), Positives = 128/241 (53%), Gaps = 14/241 (5%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RLD+ +A SR+ + IR VDG + + +F L + + + DG PL + Sbjct: 4 RLDRILALSGLGSRSDVKKMIRKKNCCVDGVRIVSPSFILDTDLNKITIDGEPLVLRTN- 62 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWSH 119 Y M NKPQG V ST DP H TV+ ++ P L GRLDIDT GL+++TDDG+ +H Sbjct: 63 VYLMFNKPQGCVTSTSDPVHKTVMDYIKAPFDRMTLFPIGRLDIDTEGLLIITDDGEITH 122 Query: 120 RITSPRHHCEKTYLVTLESPVADDT----AEQFAKGVQLHNEKDLTKPAVLEVITPTQ-- 173 +ITSP+ KTY + L +D+ E+F KG+ L N PA E Sbjct: 123 KITSPKSGTVKTYYLELSREPSDEEFKNYCEEFEKGIVLKNG-YKCLPAKFEKCENKTGS 181 Query: 174 ----VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 + I+EG++HQVK+M + GN + L R +G I LD L GEYR L+ EEI S Sbjct: 182 FRSGFLMHITEGKFHQVKKMCLSAGNELCYLRRIAVGSIVLDETLKTGEYRELSAEEIDS 241 Query: 230 V 230 + Sbjct: 242 L 242 >UniRef50_C8WBY9 Pseudouridine synthase n=3 Tax=Zymomonas mobilis RepID=C8WBY9_ZYMMN Length = 509 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 60/230 (26%), Positives = 98/230 (42%), Gaps = 3/230 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +++ SR + I R+ +DG V A L V DG P+ R Sbjct: 272 RIAKLLSRAGIASRRMIEAMIEEGRIAIDGVTVEKPATLLTSLDGVTVDGKPVNAPTETR 331 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 F+ +K G + + DP+ +Y ++ GRLD++T GL+L+T DG + + Sbjct: 332 LFLYHKATGLLTTERDPEGRKTIYDRLPADLPRVMPVGRLDMNTEGLLLLTTDGGFKRML 391 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEV--ITPTQVRLTIS 179 P H E+ Y + V+ D E+ +GV + + A LE V + + Sbjct: 392 ELPATHIERCYRARVFGDVSQDQLEELIEGVTIDGIHYGSIDANLERRTGRNGWVEMKLH 451 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 EGR +V+R+ +G V L R G L DL G + + + Sbjct: 452 EGRNREVRRVLGYLGLQVSRLIRISYGPFLL-GDLPVGAVEEVDPATLKA 500 >UniRef50_B6W7S5 Pseudouridine synthase n=2 Tax=Anaerococcus RepID=B6W7S5_9FIRM Length = 231 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 121/231 (52%), Gaps = 4/231 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++K+IA+ SR + I+ V V+G+ + + ++++ V G L + Sbjct: 1 MRINKYIAKAGLASRRKSEEYIKKGLVFVNGKKLDDLSYQVKENDQVKVMGKLLEIKE-K 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y+ LNKP G++ S DP + L L + + AGRLD D+ GL+L+T+DG+ +++ Sbjct: 60 FYYKLNKPIGFISSNYDPHNKKDLNSL-VKIDHRFFCAGRLDKDSHGLMLITNDGKITNK 118 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLH-NEKDLTKPAVLEVITPTQVRLTIS 179 + P EKTY+V ++ + D F KG++L NEK L + I Sbjct: 119 LIHPSKKIEKTYIVKVDKLLNKDDEALFRKGIKLSVNEKTSDAKINLIDENSKIYEVIIH 178 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +G QV+RMF G+ V++L R +IG I L L G+Y+ L ++E+ + Sbjct: 179 QGFNRQVRRMFLYFGSKVIDLKRIKIGQIEL-GKLEDGKYKKLNKKELEYL 228 >UniRef50_A0LG30 Pseudouridine synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LG30_SYNFM Length = 250 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 111/235 (47%), Gaps = 8/235 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL K +AQ SR A IR RV V+G +V K+ P + D +A Sbjct: 4 VRLQKVLAQAGIASRRGAEEVIRQGRVVVNGIVVTELGVKVDPHADRITVDRVTIAMVES 63 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +L KP+ V + DP ++ +L GRLD D GL+L+T+DG ++ Sbjct: 64 RVYLLLFKPRCCVTTARDPQGRKTVFDFVPDAGARLFPVGRLDFDAEGLLLLTNDGLLAN 123 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT----PTQVR 175 R+ PR+ KTY V ++ GV L E+ +T PA + VI T++R Sbjct: 124 RLQHPRYGVTKTYEVAAMGHPTPAALDRLRTGVML--EEGMTAPAEVTVIGSSPRSTRLR 181 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + + +G Q+KRM AVG+ V+ + R G + L L PG R L E+ + Sbjct: 182 IVLHQGWNRQIKRMGEAVGHPVLSIKRVAFGPLKL-GSLKPGGSRHLKSGEVELL 235 >UniRef50_B8ETE9 Pseudouridine synthase n=1 Tax=Methylocella silvestris BL2 RepID=B8ETE9_METSB Length = 676 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 71/225 (31%), Positives = 112/225 (49%), Gaps = 6/225 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K IA+ SR A I RV ++G I+ + A + P+ + DG PLA++ R Sbjct: 26 RIAKVIARAGACSRRDAETLISEGRVALNGAILISPAINVGPDDVILIDGAPLAERARTR 85 Query: 62 YFMLNKPQGYVCSTDDPD-HPTVLYFLDE--PVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 F+ +KP+G V + DP+ PTV ++ E P A +L + GRLDI+T GL+L+T+DG + Sbjct: 86 LFLFHKPRGLVTTEHDPEGRPTVFDYVREHSPEAPRLVSIGRLDINTEGLLLLTNDGGLA 145 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT- 177 + P + Y V + + T ++ +GV + A L+ I LT Sbjct: 146 RVLELPATGWARRYRVRAKGSIDQPTLDRLRQGVTVEGVDYAQIEATLDRIQGANCWLTM 205 Query: 178 -ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRP 221 + EG+ ++KR+ +G V L R G L ADL G+ Sbjct: 206 SLREGKNREIKRVLEHLGLEVNRLIRLSYGPFQL-ADLEEGKVEE 249 >UniRef50_Q0BE12 Pseudouridine synthase, Rsu n=7 Tax=Burkholderia RepID=Q0BE12_BURCM Length = 690 Score = 241 bits (616), Expect = 1e-62, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 111/250 (44%), Gaps = 27/250 (10%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL K +++ SR A I V VDGE + K+ P+ + D A Q Sbjct: 442 MRLSKRMSELGLCSRREADEWIEKGWVLVDGERIDTLGTKVRPDQKIEIDERASAAQAAQ 501 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK---------------LHAAGRLDIDT 105 +L+KP GYV + + + W L AGRLDID+ Sbjct: 502 VTILLHKPVGYVSGQAEDGYEPASVLITRANQWSGDRSPLRFSPQHLHALAPAGRLDIDS 561 Query: 106 TGLVLMTDDGQWSHRITSPRHHCEKTYLVTL---------ESPVADDTAEQFAKGVQLHN 156 TG++++T +G+ + ++ + +K YLV + + ++ + G++L Sbjct: 562 TGMLVLTQNGRIAKQLIGEQSDIDKEYLVRVRFGERLLDIDQHFPAESLAKLRHGLELDG 621 Query: 157 EKDLTKPAVLEVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAP 216 KPA++ Q+R + EG+ Q++RM VG V+ L R R+G + L L Sbjct: 622 V--ALKPAMVSWQNGEQLRFVLREGKKRQIRRMCELVGLEVIGLKRVRMGRVML-GALPQ 678 Query: 217 GEYRPLTEEE 226 G++R L+ +E Sbjct: 679 GQWRYLSPDE 688 >UniRef50_Q31H34 Pseudouridine synthase n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31H34_THICR Length = 261 Score = 241 bits (616), Expect = 1e-62, Method: Composition-based stats. Identities = 66/230 (28%), Positives = 112/230 (48%), Gaps = 6/230 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL+K I+Q S+ A I NRVTV+G++ + K+ V DG P+A Sbjct: 32 MRLNKLISQAGLGSKKQADAWIMQNRVTVNGQVA-SVGQKVNQHDQVLLDGRPVAWSSEV 90 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 +KP G VC+ D ++ + + A GRLD + GL+++T+ G ++ Sbjct: 91 LLMAYHKPVGVVCTHDLSVANNLV--VSTGLMQHFSAMGRLDKASEGLMILTNQGDLTNH 148 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 I P EK Y V ++ P+ + +GV++ + +T+P +E R+ +++ Sbjct: 149 ILQPGFAHEKEYWVEVDQPLTEYFLTNMQQGVEIMGQ--VTRPCEIEATGEHCFRIVLTQ 206 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G Q++RM ++G V+ L R RI + LD DL R L + E + + Sbjct: 207 GLNKQIRRMCKSLGYRVLRLQRVRIAQVWLD-DLPVNTLRELNDVEKSGL 255 >UniRef50_Q0AS26 Pseudouridine synthase n=1 Tax=Maricaulis maris MCS10 RepID=Q0AS26_MARMM Length = 372 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 3/219 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ KF+A+ SR R I G RV VDG+ + AFK+ + DG + + Sbjct: 10 RIAKFLARAGVASRREVERMIEGGRVKVDGKTLDTPAFKVTGSEHIEVDGKRIEPPAATK 69 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 + +KP G V + DP+ ++ ++ + GRLD+ + GL+L+T+DG + + Sbjct: 70 LWRYHKPDGLVTTHADPEGRETVFDAIPKDIGRVISIGRLDLTSEGLLLLTNDGALARAL 129 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT--QVRLTIS 179 P + Y +++ + GV + K +E T + + + I Sbjct: 130 ELPSTGWTRRYRARAFGSISESALKILRAGVTVEGIKYGPMEVEVERETGSNIWLEVGIR 189 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGE 218 EG+ +V++ AVG V L R G L L GE Sbjct: 190 EGKNREVRKALDAVGLRVNRLIRIAYGPFQL-GQLEKGE 227 >UniRef50_Q5SLZ5 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q5SLZ5_THET8 Length = 243 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 90/230 (39%), Positives = 125/230 (54%), Gaps = 7/230 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RLDK +A+ SR R +R +V V G++V++ F++ + +G PL + Sbjct: 5 RLDKVLARLGLGSRKEVARLVRQGKVRVLGQVVKDPGFRVPEGAALEVEGRPLEVR-RHL 63 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 + +L+KP G+V S + P+V L L GRLD D GL+L T DG HR+ Sbjct: 64 HVLLHKPPGFVTSRT--EGPSVYALLQGFPTRDLSPVGRLDKDAEGLLLFTTDGLLLHRL 121 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI-TPTQVRLTISE 180 T PRH K YLV LE PV E F +G+ L +K T PA L + PT + + E Sbjct: 122 THPRHKVAKRYLVHLERPVGPKDQEAFREGILLDGKK--TLPAELTPLEDPTWAEVVLKE 179 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR+HQ+KRMF A GN V+ L R +G + L DL PG+ RPLTE E ++ Sbjct: 180 GRFHQIKRMFRARGNRVLRLKRLALGPLEL-GDLPPGKARPLTEAEEKAL 228 >UniRef50_A7VSS7 Pseudouridine synthase n=2 Tax=Clostridiales RepID=A7VSS7_9CLOT Length = 256 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 95/232 (40%), Positives = 132/232 (56%), Gaps = 7/232 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RLDK ++ Q SR AG IR V V+G + K PE + +G PL Q Sbjct: 7 RLDKILSSQGVGSRKEAGILIRRGLVHVNGILATRPETKTDPERDQITIEGKPLRFQ-RH 65 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWSH 119 Y M+NKP G V ++ D TV+ + ++ + L AGRLD DTTGL+++TDDG+ +H Sbjct: 66 VYLMMNKPAGVVSASRDSREKTVVDLVPPVLSRRDLFPAGRLDRDTTGLLILTDDGELAH 125 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVR---L 176 R+ SP+ H K Y +++ PV + E+FA GV L + + PA L V+ + Sbjct: 126 RMLSPKKHVYKLYEASVDGPVGAEEIEKFAAGVALEDG-TVCLPAGLTVVKQGTAWETLV 184 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 I EG++HQVK+MF AVG V+ L R RIGG+ LD L GE R LT+EE+A Sbjct: 185 EIREGKFHQVKKMFLAVGRRVLRLKRVRIGGLELDKTLKEGECRELTKEELA 236 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AA45 Ribosomal small subunit pseudouridine synthase A... 309 5e-83 UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyr... 300 2e-80 UniRef50_Q8ZGM2 Ribosomal small subunit pseudouridine synthase A... 299 5e-80 UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadale... 296 3e-79 UniRef50_A4J3M3 Pseudouridine synthase n=167 Tax=Bacteria RepID=... 289 4e-77 UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3... 288 1e-76 UniRef50_B2V6W2 Pseudouridine synthase n=5 Tax=Bacteria RepID=B2... 287 2e-76 UniRef50_C0FY58 Pseudouridine synthase n=3 Tax=Clostridiales Rep... 287 3e-76 UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter ferme... 286 3e-76 UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B... 286 4e-76 UniRef50_UPI0001693918 pseudouridylate synthase n=1 Tax=Paenibac... 284 2e-75 UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q2... 284 2e-75 UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae Re... 283 3e-75 UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroid... 282 4e-75 UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae Rep... 282 6e-75 UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales Re... 282 7e-75 UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapol... 282 7e-75 UniRef50_B8G2X0 Pseudouridine synthase n=3 Tax=Bacteria RepID=B8... 281 1e-74 UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gin... 280 2e-74 UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uen... 280 2e-74 UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B... 280 2e-74 UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes Rep... 280 2e-74 UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=... 280 3e-74 UniRef50_A3HY40 Pseudouridine synthase n=1 Tax=Algoriphagus sp. ... 280 3e-74 UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3... 279 5e-74 UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia ... 279 7e-74 UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes Rep... 279 7e-74 UniRef50_C8QZD4 Pseudouridine synthase n=1 Tax=Desulfurivibrio a... 277 2e-73 UniRef50_C4Z9Y4 Pseudouridine synthase n=16 Tax=Bacteria RepID=C... 277 2e-73 UniRef50_Q2NSN0 Pseudouridine synthase n=7 Tax=Gammaproteobacter... 277 2e-73 UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteracea... 277 3e-73 UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium c... 277 3e-73 UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter hepari... 276 5e-73 UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 276 5e-73 UniRef50_A8SYF2 Pseudouridine synthase n=1 Tax=Coprococcus eutac... 275 5e-73 UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organism... 275 6e-73 UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae... 275 7e-73 UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wo... 275 8e-73 UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae... 275 8e-73 UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum ter... 275 1e-72 UniRef50_C9KIR7 Pseudouridine synthase n=1 Tax=Mitsuokella multa... 274 1e-72 UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marin... 274 1e-72 UniRef50_A1U6Q2 Pseudouridine synthase n=4 Tax=Gammaproteobacter... 274 2e-72 UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3... 274 2e-72 UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax... 273 3e-72 UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0... 273 4e-72 UniRef50_Q1YVK2 Pseudouridine synthase n=3 Tax=Gammaproteobacter... 272 7e-72 UniRef50_B5YJH7 Pseudouridine synthase n=1 Tax=Thermodesulfovibr... 272 7e-72 UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1... 272 7e-72 UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=... 272 8e-72 UniRef50_C1F236 Pseudouridine synthase n=8 Tax=Bacteria RepID=C1... 272 8e-72 UniRef50_A9KNY1 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 271 2e-71 UniRef50_C7GZ55 Pseudouridine synthase n=1 Tax=Eubacterium saphe... 271 2e-71 UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=... 270 2e-71 UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_14... 269 5e-71 UniRef50_B9MRL6 Pseudouridine synthase n=2 Tax=Clostridia RepID=... 269 6e-71 UniRef50_A9KPL1 Pseudouridine synthase n=63 Tax=Bacteria RepID=A... 269 7e-71 UniRef50_C9L6I1 Pseudouridine synthase n=1 Tax=Blautia hansenii ... 268 1e-70 UniRef50_C8WGQ8 Pseudouridine synthase n=1 Tax=Eggerthella lenta... 268 1e-70 UniRef50_C6X4T2 Pseudouridine synthase n=2 Tax=Flavobacteriaceae... 268 1e-70 UniRef50_A2RP35 Pseudouridine synthase n=172 Tax=Firmicutes RepI... 268 1e-70 UniRef50_A4J9G8 Pseudouridine synthase n=47 Tax=Bacteria RepID=A... 268 1e-70 UniRef50_Q6G8H4 Pseudouridine synthase n=61 Tax=Firmicutes RepID... 268 1e-70 UniRef50_A0JV58 Pseudouridine synthase n=37 Tax=Actinobacteridae... 267 2e-70 UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales ... 267 3e-70 UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus mari... 267 3e-70 UniRef50_C8NZC3 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 267 3e-70 UniRef50_D2B9T7 Pseudouridine synthase n=18 Tax=Actinobacteria (... 267 3e-70 UniRef50_A4SY81 Pseudouridine synthase n=5 Tax=Proteobacteria Re... 266 4e-70 UniRef50_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula m... 266 4e-70 UniRef50_C8PSZ6 Ribosomal large subunit pseudouridine synthase B... 265 6e-70 UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 265 6e-70 UniRef50_UPI00016C3D27 ribosomal large subunit pseudouridine syn... 265 7e-70 UniRef50_A3JEU2 Pseudouridine synthase n=2 Tax=Marinobacter RepI... 265 8e-70 UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pine... 265 8e-70 UniRef50_C4FUC8 Pseudouridine synthase n=1 Tax=Catonella morbi A... 265 1e-69 UniRef50_A0L6G3 Pseudouridine synthase n=1 Tax=Magnetococcus sp.... 265 1e-69 UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter rube... 264 2e-69 UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 264 2e-69 UniRef50_B4D966 Pseudouridine synthase n=1 Tax=Chthoniobacter fl... 264 2e-69 UniRef50_Q9I5J6 Ribosomal small subunit pseudouridine synthase A... 264 2e-69 UniRef50_Q1LLR3 Pseudouridine synthase n=15 Tax=Proteobacteria R... 264 2e-69 UniRef50_Q2LSY4 Pseudouridine synthase n=1 Tax=Syntrophus acidit... 264 3e-69 UniRef50_Q38VQ0 Pseudouridine synthase n=6 Tax=Lactobacillus Rep... 263 3e-69 UniRef50_A5KLG0 Pseudouridine synthase n=8 Tax=Bacteria RepID=A5... 263 4e-69 UniRef50_A5V220 Pseudouridine synthase n=5 Tax=Bacteria RepID=A5... 262 5e-69 UniRef50_D0U645 Pseudouridine synthase n=1 Tax=uncultured actino... 262 5e-69 UniRef50_A8SLU4 Pseudouridine synthase n=1 Tax=Parvimonas micra ... 262 5e-69 UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae Re... 262 6e-69 UniRef50_B0S1L0 Pseudouridine synthase n=2 Tax=Finegoldia magna ... 262 6e-69 UniRef50_D2R7V9 Pseudouridine synthase n=1 Tax=Pirellula staleyi... 262 6e-69 UniRef50_UPI0001BCEF2E pseudouridine synthase n=1 Tax=Selenomona... 262 6e-69 UniRef50_Q6SI36 Pseudouridine synthase n=1 Tax=uncultured marine... 262 7e-69 UniRef50_C2KV26 Pseudouridylate synthase n=1 Tax=Oribacterium si... 262 7e-69 UniRef50_Q21JF0 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 262 1e-68 UniRef50_B9KY92 Pseudouridine synthase n=1 Tax=Thermomicrobium r... 262 1e-68 UniRef50_A6DMJ6 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 261 1e-68 UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces mari... 261 1e-68 UniRef50_B3DRY9 Pseudouridine synthase n=7 Tax=Bifidobacterium R... 261 1e-68 UniRef50_C1XV14 Pseudouridine synthase n=2 Tax=Meiothermus RepID... 260 2e-68 UniRef50_Q47QM5 Pseudouridine synthase n=3 Tax=Actinomycetales R... 260 2e-68 UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium R... 260 2e-68 UniRef50_B1XJP9 Pseudouridine synthase n=3 Tax=Chroococcales Rep... 260 2e-68 UniRef50_B1C6T1 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 260 2e-68 UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterinea... 260 2e-68 UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium ... 260 2e-68 UniRef50_C9LMF3 Ribosomal small subunit pseudouridine synthase A... 260 2e-68 UniRef50_B6IXC3 Pseudouridine synthase n=2 Tax=Alphaproteobacter... 260 2e-68 UniRef50_A9ITY6 Pseudouridine synthase n=6 Tax=Betaproteobacteri... 260 3e-68 UniRef50_A6EPE0 Pseudouridine synthase n=1 Tax=unidentified euba... 260 3e-68 UniRef50_UPI0001C37AA4 16s pseudouridylate synthase n=2 Tax=Rumi... 260 3e-68 UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9... 260 3e-68 UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytop... 260 3e-68 UniRef50_B0VG32 Pseudouridine synthase n=1 Tax=Candidatus Cloaca... 260 3e-68 UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q0... 260 4e-68 UniRef50_Q12AB3 Pseudouridine synthase n=8 Tax=Proteobacteria Re... 260 4e-68 UniRef50_A1K3P0 Pseudouridylate synthase n=3 Tax=Betaproteobacte... 259 4e-68 UniRef50_D1PIW4 Pseudouridine synthase n=1 Tax=Subdoligranulum v... 259 4e-68 UniRef50_C0W3E8 Pseudouridine synthase n=1 Tax=Actinomyces uroge... 259 4e-68 UniRef50_B0RHF4 Pseudouridine synthase n=3 Tax=Actinobacteria (c... 259 4e-68 UniRef50_C5EVC9 Pseudouridine synthase n=6 Tax=Clostridiales Rep... 259 4e-68 UniRef50_Q140U9 Pseudouridine synthase n=80 Tax=Proteobacteria R... 259 4e-68 UniRef50_D1C7P2 Pseudouridine synthase n=1 Tax=Sphaerobacter the... 259 4e-68 UniRef50_A1K7C2 Pseudouridine synthase n=1 Tax=Azoarcus sp. BH72... 259 5e-68 UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6... 259 5e-68 UniRef50_C5BI29 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 259 7e-68 UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vaden... 259 7e-68 UniRef50_Q1IJT7 Pseudouridine synthase n=1 Tax=Candidatus Koriba... 259 7e-68 UniRef50_Q1GFA6 Pseudouridine synthase n=3 Tax=Rhodobacteraceae ... 259 7e-68 UniRef50_Q042N1 Pseudouridine synthase n=3 Tax=Lactobacillus gas... 259 8e-68 UniRef50_D1AL84 Pseudouridine synthase n=1 Tax=Sebaldella termit... 259 8e-68 UniRef50_C1ZE67 Pseudouridine synthase n=1 Tax=Planctomyces limn... 258 9e-68 UniRef50_A5EVQ2 Pseudouridine synthase n=1 Tax=Dichelobacter nod... 258 1e-67 UniRef50_D2RB61 Pseudouridylate synthase n=2 Tax=Gardnerella vag... 258 1e-67 UniRef50_C8WAL4 Pseudouridine synthase n=7 Tax=Coriobacteriaceae... 258 1e-67 UniRef50_C4XSY8 Pseudouridine synthase n=11 Tax=Desulfovibrional... 258 1e-67 UniRef50_C5WHE9 Pseudouridine synthase n=3 Tax=Lactobacillales R... 258 1e-67 UniRef50_C7H4Z6 Pseudouridine synthase n=1 Tax=Faecalibacterium ... 257 2e-67 UniRef50_O32068 Uncharacterized RNA pseudouridine synthase ytzG ... 257 2e-67 UniRef50_Q3IC94 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q3... 257 2e-67 UniRef50_C4V2S0 Pseudouridine synthase n=1 Tax=Selenomonas flueg... 257 2e-67 UniRef50_C0QWY7 Pseudouridine synthase n=2 Tax=Brachyspira RepID... 257 2e-67 UniRef50_Q1J642 Pseudouridine synthase n=51 Tax=Streptococcus Re... 257 2e-67 UniRef50_A1WE21 Pseudouridine synthase n=1 Tax=Verminephrobacter... 257 3e-67 UniRef50_B9XS61 Pseudouridine synthase n=1 Tax=bacterium Ellin51... 257 3e-67 UniRef50_C1DA59 Pseudouridine synthase n=6 Tax=Betaproteobacteri... 256 4e-67 UniRef50_C6JI84 Pseudouridine synthase n=2 Tax=Fusobacterium Rep... 255 6e-67 UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodi... 255 7e-67 UniRef50_C8P160 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 255 7e-67 UniRef50_C6HYA4 Pseudouridine synthase n=1 Tax=Leptospirillum fe... 255 8e-67 UniRef50_C7PFL3 Pseudouridine synthase n=3 Tax=Bacteria RepID=C7... 255 8e-67 UniRef50_B8DUD9 Pseudouridine synthase n=8 Tax=Bifidobacterium R... 255 9e-67 UniRef50_Q2W4E4 Pseudouridine synthase n=20 Tax=cellular organis... 255 1e-66 UniRef50_C3X1E1 Pseudouridine synthase n=2 Tax=Oxalobacter formi... 255 1e-66 UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1... 254 1e-66 UniRef50_Q83IR6 Ribosomal large subunit pseudouridine synthase F... 254 1e-66 UniRef50_C6XB83 RNA-binding S4 domain protein n=2 Tax=Methylophi... 254 1e-66 UniRef50_C7I043 Pseudouridine synthase n=4 Tax=Proteobacteria Re... 254 2e-66 UniRef50_B1KQS3 Pseudouridine synthase n=20 Tax=Gammaproteobacte... 254 2e-66 UniRef50_Q49YI4 Pseudouridine synthase n=2 Tax=Staphylococcus Re... 254 2e-66 UniRef50_C5CXG1 Pseudouridine synthase n=4 Tax=Comamonadaceae Re... 254 2e-66 UniRef50_C9RK28 Pseudouridine synthase n=1 Tax=Fibrobacter succi... 254 2e-66 UniRef50_Q3J464 Pseudouridine synthase n=15 Tax=Bacteria RepID=Q... 254 2e-66 UniRef50_Q7UUP0 Pseudouridine synthase n=1 Tax=Rhodopirellula ba... 254 2e-66 UniRef50_B1M661 Pseudouridine synthase n=2 Tax=Alphaproteobacter... 253 3e-66 UniRef50_Q0F269 Pseudouridine synthase n=1 Tax=Mariprofundus fer... 253 3e-66 UniRef50_B0MSS4 Pseudouridine synthase n=1 Tax=Alistipes putredi... 253 4e-66 UniRef50_Q21MN5 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q2... 253 4e-66 UniRef50_C0EB54 Pseudouridine synthase n=1 Tax=Clostridium methy... 252 6e-66 UniRef50_A6GNL7 Pseudouridine synthase n=2 Tax=Betaproteobacteri... 252 9e-66 UniRef50_A5TWE7 Pseudouridine synthase n=10 Tax=Fusobacterium Re... 251 1e-65 UniRef50_B0SBU8 Pseudouridine synthase n=2 Tax=Leptospira biflex... 251 1e-65 UniRef50_Q15Q67 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q1... 251 1e-65 UniRef50_A8U325 Pseudouridine synthase n=1 Tax=alpha proteobacte... 251 1e-65 UniRef50_Q04F57 Pseudouridine synthase n=2 Tax=Oenococcus oeni R... 251 1e-65 UniRef50_Q0G3T3 Pseudouridine synthase n=4 Tax=Alphaproteobacter... 251 1e-65 UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0... 251 1e-65 UniRef50_A6WK95 Pseudouridine synthase n=12 Tax=Gammaproteobacte... 251 2e-65 UniRef50_B6R892 Pseudouridine synthase n=1 Tax=Pseudovibrio sp. ... 251 2e-65 UniRef50_B0T1Z8 Pseudouridine synthase n=1 Tax=Caulobacter sp. K... 250 2e-65 UniRef50_C7NDY8 Pseudouridine synthase n=5 Tax=Fusobacteriaceae ... 250 3e-65 UniRef50_Q9HZ55 Ribosomal large subunit pseudouridine synthase B... 250 3e-65 UniRef50_Q1LJQ9 Pseudouridine synthase n=3 Tax=Burkholderiales R... 250 3e-65 UniRef50_Q1J0B9 Pseudouridine synthase n=5 Tax=Deinococci RepID=... 250 4e-65 UniRef50_B0S303 Pseudouridine synthase n=2 Tax=Finegoldia magna ... 249 5e-65 UniRef50_A3JIZ1 Pseudouridine synthase n=1 Tax=Marinobacter sp. ... 249 5e-65 UniRef50_Q1H048 Pseudouridine synthase n=4 Tax=Betaproteobacteri... 249 5e-65 UniRef50_A1UU09 Pseudouridine synthase n=4 Tax=Bartonella RepID=... 249 6e-65 UniRef50_A8U4V7 Pseudouridine synthase n=10 Tax=Lactobacillales ... 249 6e-65 UniRef50_P45104 Ribosomal large subunit pseudouridine synthase B... 249 7e-65 UniRef50_C6BUF1 RNA-binding S4 domain protein n=1 Tax=Desulfovib... 249 8e-65 UniRef50_C7H5G4 Pseudouridine synthase n=8 Tax=Clostridiales Rep... 249 8e-65 UniRef50_B2TQQ1 Pseudouridine synthase n=8 Tax=Clostridium RepID... 248 9e-65 UniRef50_Q8Z1V3 Ribosomal large subunit pseudouridine synthase F... 248 9e-65 UniRef50_C8WBY9 Pseudouridine synthase n=3 Tax=Zymomonas mobilis... 248 1e-64 UniRef50_D0SB72 Pseudouridine synthase n=5 Tax=Acinetobacter Rep... 248 1e-64 UniRef50_Q01Z61 Pseudouridine synthase n=1 Tax=Candidatus Soliba... 248 1e-64 UniRef50_B2IHU4 Pseudouridine synthase n=1 Tax=Beijerinckia indi... 248 1e-64 UniRef50_Q55578 Uncharacterized RNA pseudouridine synthase slr03... 247 2e-64 UniRef50_C0BLA3 Pseudouridine synthase n=1 Tax=Flavobacteria bac... 247 2e-64 UniRef50_A5ZYR1 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 247 2e-64 UniRef50_A7HC79 Pseudouridine synthase n=1 Tax=Anaeromyxobacter ... 247 3e-64 UniRef50_A0NV51 Pseudouridine synthase n=2 Tax=cellular organism... 247 3e-64 UniRef50_A9MDW0 Pseudouridine synthase n=43 Tax=Rhizobiales RepI... 247 3e-64 UniRef50_C7NBL1 Pseudouridine synthase n=3 Tax=Leptotrichia RepI... 246 4e-64 UniRef50_Q3MC44 Pseudouridine synthase n=21 Tax=Cyanobacteria Re... 246 5e-64 UniRef50_UPI0001BC42E2 ribosomal small subunit pseudouridine syn... 246 5e-64 UniRef50_Q5F8V3 Pseudouridine synthase n=21 Tax=Proteobacteria R... 246 5e-64 UniRef50_B7L142 Pseudouridine synthase n=9 Tax=Alphaproteobacter... 245 6e-64 UniRef50_Q13BM8 Pseudouridine synthase n=55 Tax=Alphaproteobacte... 245 7e-64 UniRef50_B4RA72 Pseudouridine synthase n=4 Tax=Caulobacteraceae ... 245 8e-64 UniRef50_B4RM91 Pseudouridine synthase n=8 Tax=Betaproteobacteri... 245 8e-64 UniRef50_Q1Q1Q0 Pseudouridine synthase n=1 Tax=Candidatus Kuenen... 245 9e-64 UniRef50_Q0AS26 Pseudouridine synthase n=1 Tax=Maricaulis maris ... 245 9e-64 UniRef50_Q31GA0 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 245 1e-63 UniRef50_C8P302 Pseudouridine synthase n=1 Tax=Erysipelothrix rh... 245 1e-63 UniRef50_A9NFY3 Pseudouridine synthase n=1 Tax=Acholeplasma laid... 245 1e-63 UniRef50_C2KPR0 Pseudouridine synthase n=3 Tax=Mobiluncus RepID=... 245 1e-63 UniRef50_Q5SLZ5 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q5... 245 1e-63 UniRef50_A8SIK9 Pseudouridine synthase n=1 Tax=Parvimonas micra ... 244 1e-63 UniRef50_Q21EB0 Pseudouridine synthase n=14 Tax=Gammaproteobacte... 244 1e-63 UniRef50_C6XQT2 Pseudouridine synthase n=1 Tax=Hirschia baltica ... 244 1e-63 UniRef50_A3UFV9 Pseudouridine synthase n=1 Tax=Oceanicaulis alex... 244 2e-63 UniRef50_D0BMY5 Pseudouridine synthase n=1 Tax=Granulicatella el... 244 2e-63 UniRef50_D2MQD6 Pseudouridylate synthase n=1 Tax=Bulleidia extru... 244 2e-63 UniRef50_Q8X4Q8 Ribosomal large subunit pseudouridine synthase B... 244 2e-63 UniRef50_D1R854 Pseudouridine synthase n=4 Tax=Chlamydiales RepI... 244 2e-63 UniRef50_B6W7S5 Pseudouridine synthase n=2 Tax=Anaerococcus RepI... 244 2e-63 UniRef50_Q3AVD5 Pseudouridine synthase n=3 Tax=Cyanobacteria Rep... 244 2e-63 UniRef50_A8I6C3 Pseudouridine synthase n=6 Tax=Alphaproteobacter... 244 3e-63 UniRef50_Q2K4S3 Pseudouridine synthase n=10 Tax=Rhizobiaceae Rep... 244 3e-63 UniRef50_B2HUK5 Pseudouridine synthase n=9 Tax=Gammaproteobacter... 243 3e-63 UniRef50_C5SKU3 Pseudouridine synthase n=2 Tax=Asticcacaulis exc... 243 4e-63 UniRef50_B9JSE7 Ribosomal large subunit pseudouridine synthase B... 242 5e-63 UniRef50_A0PYR9 Pseudouridine synthase n=9 Tax=Clostridium RepID... 242 5e-63 UniRef50_D0J8G4 Pseudouridine synthase, Rsu n=96 Tax=Bacteria Re... 242 6e-63 UniRef50_C5CED2 Pseudouridine synthase n=1 Tax=Kosmotoga olearia... 242 6e-63 UniRef50_C6VP86 Pseudouridine synthase n=4 Tax=Lactobacillaceae ... 242 7e-63 UniRef50_B4W9R3 Pseudouridine synthase n=2 Tax=Brevundimonas Rep... 242 7e-63 UniRef50_A7HJ83 RNA-binding S4 domain protein n=3 Tax=Thermotoga... 242 9e-63 UniRef50_Q0BE12 Pseudouridine synthase, Rsu n=7 Tax=Burkholderia... 242 9e-63 UniRef50_A6DF49 Pseudouridine synthase n=1 Tax=Lentisphaera aran... 242 1e-62 UniRef50_A0M7H0 Ribosomal large subunit pseudouridine synthase F... 242 1e-62 UniRef50_C1XNC4 Pseudouridine synthase n=1 Tax=Meiothermus ruber... 241 1e-62 UniRef50_B7VP37 Pseudouridine synthase n=2 Tax=Gammaproteobacter... 241 1e-62 UniRef50_A0LG30 Pseudouridine synthase n=1 Tax=Syntrophobacter f... 241 1e-62 UniRef50_Q73PC4 Pseudouridine synthase n=1 Tax=Treponema dentico... 241 2e-62 UniRef50_A7VSS7 Pseudouridine synthase n=2 Tax=Clostridiales Rep... 241 2e-62 UniRef50_A6LLC7 RNA-binding S4 domain protein n=1 Tax=Thermosiph... 240 2e-62 UniRef50_C6AV89 Pseudouridine synthase n=17 Tax=Rhizobiaceae Rep... 240 3e-62 Sequences not found previously or not previously below threshold: >UniRef50_P0AA45 Ribosomal small subunit pseudouridine synthase A n=156 Tax=Gammaproteobacteria RepID=RSUA_ECO57 Length = 231 Score = 309 bits (793), Expect = 5e-83, Method: Composition-based stats. Identities = 229/229 (100%), Positives = 229/229 (100%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP Sbjct: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR Sbjct: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE Sbjct: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS Sbjct: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 >UniRef50_C7ICF2 Pseudouridine synthase n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7ICF2_9CLOT Length = 235 Score = 300 bits (770), Expect = 2e-80, Method: Composition-based stats. Identities = 78/234 (33%), Positives = 126/234 (53%), Gaps = 7/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL K++A SR A I+ RV V+ I+ N + V DG P+ + Sbjct: 4 IRLQKYLAHAGVASRRKAEEMIKQGRVAVNNVIIENMGATVTCNDVVTVDGKPVTTEEAK 63 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y MLNKP GYV ++ D + L + +L+ GRLD DT+GL+L+T+DG +++R Sbjct: 64 VYIMLNKPVGYVSTSKDQFGRPAVIDLVKDAGKRLYPVGRLDYDTSGLILLTNDGDFTYR 123 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT----PTQVRL 176 +T P+H K Y + + +F G+++ + T PA EV+ T VR+ Sbjct: 124 LTHPKHEVNKVYEAVISGFPDKNEITRFETGLKIDD--YQTSPAEFEVLNKKGINTLVRI 181 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 TI EG+ QV++M A+G+ V+ L R +IG I L+ +L G++R L++ E+ + Sbjct: 182 TIHEGKNRQVRKMCEAIGHKVLTLKRIQIGPIALE-NLPEGKWRHLSDNEVKIL 234 >UniRef50_Q8ZGM2 Ribosomal small subunit pseudouridine synthase A n=134 Tax=Gammaproteobacteria RepID=RSUA_YERPE Length = 235 Score = 299 bits (767), Expect = 5e-80, Method: Composition-based stats. Identities = 188/229 (82%), Positives = 207/229 (90%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF++QQLGVSRA+ RE+R RVT+DGE+V++ A KL PE DV +DGNPL Q GP Sbjct: 1 MRLDKFLSQQLGVSRALVARELRAKRVTIDGEVVKSGAIKLTPEQDVRFDGNPLQQMVGP 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 RYFMLNKPQGYVCST+DPDHPTVLYFLDEPVA+KLHAAGRLDIDTTGLVLMTDDGQWSHR Sbjct: 61 RYFMLNKPQGYVCSTEDPDHPTVLYFLDEPVAYKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +TSPRHHCEKTYLVTLE P++DDTA+QFA GVQL+NEK LTKPA L+VI P +VRLTISE Sbjct: 121 VTSPRHHCEKTYLVTLEHPLSDDTAQQFADGVQLYNEKSLTKPAQLDVIEPQRVRLTISE 180 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 GRYHQVKRMFAAVGN V+ELHRERIG ITLD DLAPGEYRPLT EEIAS Sbjct: 181 GRYHQVKRMFAAVGNRVIELHRERIGDITLDDDLAPGEYRPLTTEEIAS 229 >UniRef50_B3E7C4 Pseudouridine synthase n=6 Tax=Desulfuromonadales RepID=B3E7C4_GEOLS Length = 274 Score = 296 bits (760), Expect = 3e-79, Method: Composition-based stats. Identities = 86/232 (37%), Positives = 122/232 (52%), Gaps = 4/232 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHGP 60 RL K I+ SR A I RVTV+G++V K P + +A DG P+ Sbjct: 4 RLQKIISAAGITSRRAAEEMILAGRVTVNGQVVTELGSKADPAKDLIALDGQPVKPAETF 63 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +L+KP GYV S DP ++ L + V +L GRLD ++ GL+L+T+DG W++R Sbjct: 64 YYVLLHKPAGYVTSLKDPQGRQLVTELVKDVGERLFPVGRLDYNSEGLLLLTNDGAWANR 123 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRLTI 178 + PRH +K Y V + + ++ A GV+L + L + + +TI Sbjct: 124 LMHPRHQVDKEYHVRVRGKIDPQQIKKLADGVELEDGPTGATTVRLLKNDQSNDWLSVTI 183 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EGR QV+RM AAVG VV L R R G +TL L PGEYR L+ EE ++ Sbjct: 184 REGRNRQVRRMCAAVGLFVVRLRRIRYGNLTL-GGLQPGEYRLLSREEAQAL 234 >UniRef50_A4J3M3 Pseudouridine synthase n=167 Tax=Bacteria RepID=A4J3M3_DESRM Length = 309 Score = 289 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 117/232 (50%), Gaps = 4/232 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHGP 60 RL K +A+ SR + I +V V+G+ V K+ P + + G PL Sbjct: 4 RLQKILAKAGVASRRHSEELIISGQVKVNGKTVTEMGLKVDPTKDKIEVKGKPLPPLEKK 63 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y ++NKP+GYV + D + L + V +++ GRLD D+ GL+L+T+DG+ + Sbjct: 64 VYLLMNKPRGYVTTLSDERDRKTVVDLLKGVEQRVYPVGRLDYDSEGLLLLTNDGELTQA 123 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ--VRLTI 178 +T P+H +KTYL ++ + + AKG+ L + L + + ++I Sbjct: 124 LTHPKHKVKKTYLAKVDGIPETEELKAMAKGLVLEDGPTAPADVRLAGTGDNRALLEISI 183 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EGR QV+RM +G V+ L R RIG + L L GE R LT++E+ + Sbjct: 184 HEGRNRQVRRMCEHIGYKVLRLRRTRIGTLEL-GSLKSGEVRALTKKELREL 234 >UniRef50_B3U4L2 Pseudouridine synthase n=3 Tax=Bacteria RepID=B3U4L2_9BACT Length = 420 Score = 288 bits (738), Expect = 1e-76, Method: Composition-based stats. Identities = 85/235 (36%), Positives = 127/235 (54%), Gaps = 8/235 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL K IA SR A I RVT++G +V+ K+ P V DG L Sbjct: 3 VRLQKLIAGTGLASRRKAEELITSGRVTINGSVVKELGTKVDPARDHVKVDGKHLRAAQP 62 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ + + DDP+ + L V ++ GRLD D+ GL+L+T+ G + Sbjct: 63 YVYLILNKPKNVMSTLDDPEGRPTVKDLLHGVTVRVFPVGRLDFDSEGLMLLTNHGDLAQ 122 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TPTQVR 175 + PR+H KTYL+ ++ + D E +GV+L + T PA ++ + + + + Sbjct: 123 ALLHPRYHVPKTYLIKVKGVLDDAKIEALERGVKLEDG--FTAPAKVKKVSRAESNSWLE 180 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +TI EGR HQVKRM AVG+ V++L R R+G + L DLAP EYR LT+ E + Sbjct: 181 VTIHEGRKHQVKRMVEAVGHSVIKLVRVRMGPL-LLGDLAPREYRFLTDREANRL 234 >UniRef50_B2V6W2 Pseudouridine synthase n=5 Tax=Bacteria RepID=B2V6W2_SULSY Length = 244 Score = 287 bits (737), Expect = 2e-76, Method: Composition-based stats. Identities = 95/237 (40%), Positives = 148/237 (62%), Gaps = 8/237 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 MRLDKF++ Q SR+ + I+ V V+ EIV++ ++ + P + V + + + Sbjct: 1 MRLDKFLSNQGFGSRSQVQKLIKKGFVKVNDEIVKDPSYHIDPMKDKVELEDEEILYKEN 60 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDE-PVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 YFMLNKP GY+ +T+D ++PTVL + P+A KL GRLDIDT GL+++T DGQ+ Sbjct: 61 H-YFMLNKPAGYITATEDEEYPTVLDLFSDLPIASKLFPVGRLDIDTEGLLILTTDGQFG 119 Query: 119 HRITSPRHHCEKTYLVTLESPVAD-DTAEQFAKGVQLHNEKDLTKPAVLEVI----TPTQ 173 HR++ P+ + EK Y +E +++ D +E KG+ L EK TKP ++V+ ++ Sbjct: 120 HRLSHPKWNIEKEYYAIVEGDISNIDFSESENKGIYLKKEKYQTKPFKVKVLNTSKDKSE 179 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + +T++EG+YH VKR+ +G V+ L R RIG + LD DL PGE+R LTE+EI + Sbjct: 180 ILITLTEGKYHIVKRIMQELGYPVLYLKRIRIGNLKLDEDLLPGEFRELTEKEIKDL 236 >UniRef50_C0FY58 Pseudouridine synthase n=3 Tax=Clostridiales RepID=C0FY58_9FIRM Length = 261 Score = 287 bits (735), Expect = 3e-76, Method: Composition-based stats. Identities = 97/234 (41%), Positives = 140/234 (59%), Gaps = 6/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 MRLDKF+ + +R+ + ++ ++TV+GEIV K+ P ++Y G P+ Sbjct: 25 MRLDKFLTEMGLGTRSEVKKILKTKQITVNGEIVTKPETKVAPENDQISYKGEPVTYCE- 83 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y++ KP G V +T+D H TV+ +L + V L GRLDIDT GL+L+T+DG +H Sbjct: 84 YEYYLFYKPAGCVTATEDQLHKTVMDYLTDTVRSDLFPVGRLDIDTEGLLLITNDGALAH 143 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT---PTQVRL 176 + SP H EKTY ++ V + F GV + E+ LTKP L ++ +++ L Sbjct: 144 DLLSPAKHVEKTYYAVIDGVVTEKDVNSFENGVDI-GEEKLTKPGKLRILKSEPESEIEL 202 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 TI+EGR+HQVKRMF AVG V+ L R +G + L DL PGEYRPLTEEEI ++ Sbjct: 203 TITEGRFHQVKRMFEAVGKKVLYLKRISMGPLQLTDDLKPGEYRPLTEEEITAL 256 >UniRef50_C6VXU0 Pseudouridine synthase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VXU0_DYAFD Length = 555 Score = 286 bits (734), Expect = 3e-76, Method: Composition-based stats. Identities = 75/231 (32%), Positives = 120/231 (51%), Gaps = 3/231 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+++IA SR A I +++V+G+IV +K+ P V Y G Sbjct: 323 IRLNRYIANAGICSRREADDLISSGQISVNGKIVTEMGYKVRPTDVVKY-GKKALNPEKM 381 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y ++NKP+ Y+ +TDDP+ TVL + + +++ GRLD +TTGL+L+T+DG+ + Sbjct: 382 VYILINKPKDYITTTDDPEERKTVLDIIAGACSERVYPVGRLDRNTTGLLLLTNDGELAE 441 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 ++T P +K Y L+ P+ + EQ GV+L + L V L I Sbjct: 442 KLTHPSSGIKKIYQAELDKPITTEDFEQLKAGVELEDGFIRPDEVGLVTPDAQVVGLEIH 501 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+RMF +G V +L R G+ DL G++R LTE+E+ + Sbjct: 502 SGRNRIVRRMFEHLGYEVQKLDRTVFAGLN-KKDLPRGKWRFLTEKEVIKL 551 >UniRef50_B0TFD8 Pseudouridine synthase n=18 Tax=Bacteria RepID=B0TFD8_HELMI Length = 333 Score = 286 bits (734), Expect = 4e-76, Method: Composition-based stats. Identities = 85/235 (36%), Positives = 126/235 (53%), Gaps = 8/235 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL K +A SR A IR RV ++G +VR ++ + DG L ++ Sbjct: 6 VRLQKLLAAHGVASRREAEAMIRAGRVRINGTVVREQGVRVDGARDVIEVDGRILKRREA 65 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 P Y+ L KP+G V + DP + L V +++ GRLD DT GL+L+T+DGQ + Sbjct: 66 PLYYALYKPRGVVTTCKDPQGRQTVIGLLSGVNERVYPVGRLDRDTEGLLLLTNDGQLAF 125 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TPTQVR 175 R+T PR EKTY L V+ + A+GVQL + +T PA + ++ T + Sbjct: 126 RLTHPRFGVEKTYRARLRGDVSAGALKALAEGVQLEDG--VTAPAQVRLLRREGDATWIE 183 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + I EGR Q++RM A+G+ V++L R G ITL L PGE RPLT E+ ++ Sbjct: 184 IKIHEGRKRQIRRMGDAIGHPVIDLERIAFGPITL-GKLKPGEVRPLTSAELRAL 237 >UniRef50_UPI0001693918 pseudouridylate synthase n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693918 Length = 249 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 76/237 (32%), Positives = 124/237 (52%), Gaps = 11/237 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL K +A SR I RV V+ ++V K+ P + DG + Q Sbjct: 4 RLQKVLAAAGVASRRKCEEIILAGRVEVNDKVVSTLGVKVNPHQDVIKVDGRAIQNQE-K 62 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y + NKP+G + S DP+ V+ + + +++ GRLD DT GL+++T+DG++++ Sbjct: 63 IYILFNKPKGVITSVSDPEGRRVVGDFLKGIKERVYPVGRLDYDTEGLLILTNDGEFANM 122 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT------PTQV 174 +T PRHH KTY T++ E+ +GV+L + +T PA +E + + Sbjct: 123 VTHPRHHVSKTYHATVKGVPHGSVLEKLREGVKLEDG--MTAPAEVEYHDIDPDKKQSVI 180 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 +TI EG+ QV+RMF AVG V L R + G I L L G++R + +EE+ +++ Sbjct: 181 SITIYEGKNRQVRRMFEAVGYPVTRLKRVKFGSIPLVG-LPRGKFRRMRKEEVQALL 236 >UniRef50_Q24V73 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q24V73_DESHY Length = 257 Score = 284 bits (727), Expect = 2e-75, Method: Composition-based stats. Identities = 86/236 (36%), Positives = 128/236 (54%), Gaps = 9/236 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLA-QQHGP 60 RL K +AQ SR A I RV V+GE++R K++ + DG L+ Q+ Sbjct: 17 RLQKVLAQAGIASRRHAEEIILQGRVKVNGEVIRTLGTKVVSTDRIVVDGRLLSIPQNDY 76 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y++L+KP GY+ S DP + L + +++ GRLD DT+GL+L+T+DG +HR Sbjct: 77 AYYLLHKPTGYITSVTDPQGRKTVMELMPKIPRRVYPVGRLDYDTSGLLLLTNDGDLAHR 136 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT------QV 174 + P + EKTY V + + + ++ KGV L + K T PA + ++P Sbjct: 137 LMHPSYGVEKTYRVEVGEKIPEQALKRLEKGVLLEDGK--TAPARIREVSPKGRGSLPTY 194 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +TI EGR QV+RMF AVG + L R R G + LD LAPG +R L++ EI + Sbjct: 195 EITIHEGRNRQVRRMFKAVGFPLSTLKRLRFGPLELDPSLAPGAFRTLSKTEIQHL 250 >UniRef50_A5IKF7 Pseudouridine synthase n=5 Tax=Thermotogaceae RepID=A5IKF7_THEP1 Length = 239 Score = 283 bits (725), Expect = 3e-75, Method: Composition-based stats. Identities = 84/229 (36%), Positives = 126/229 (55%), Gaps = 4/229 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLD++++ +R + I+ RVTV+G +V + + V DG + H Sbjct: 1 MRLDRYLSNSGVGTRKEVKKLIKQGRVTVNGRVVLDPGHSVSENDVVVLDGETVNF-HRK 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y + +KP GYV ST DP T++ FL + GRLD D GL+++T DG ++HR Sbjct: 60 VYILFHKPSGYVTSTKDPHSETIMEFLPP--LKGIFPVGRLDKDAEGLLIITSDGDFAHR 117 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 + SP+ EK Y+V +E V +D E+ GV L + +E ++ +++ I+E Sbjct: 118 VISPKWSVEKEYIVKVEGEVTEDKIEKLKNGVTLRDGFFAKAKC-VEKLSNDTLKIVITE 176 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 G+YHQ+KRM AVG V L R RIG + L D+ PGEYR L+EEE+ Sbjct: 177 GKYHQIKRMTVAVGLRTVHLKRTRIGRLVLPEDMKPGEYRFLSEEEVKK 225 >UniRef50_D2QMI8 RNA-binding S4 domain protein n=16 Tax=Bacteroidetes RepID=D2QMI8_9SPHI Length = 638 Score = 282 bits (724), Expect = 4e-75, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 121/230 (52%), Gaps = 3/230 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL++FIA SR A I ++V+G+IV +K+ V Y G + Sbjct: 406 RLNRFIANSGVCSRREADELIAHGDISVNGKIVTEMGYKVKEGDTVKY-GTKVLNPERFV 464 Query: 62 YFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +LNKP+ Y+ +T+DP+ TV+ + + ++++ GRLD +TTGL+L+T+DG+ + + Sbjct: 465 YVLLNKPKDYITTTEDPEERKTVMELVADAGKFRMYPVGRLDRNTTGLLLITNDGELADK 524 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +T P ++ K Y V L+ P+ D+ E KG++L + + V + I Sbjct: 525 LTHPSNNIRKIYQVELDKPITDEHFEAIKKGIELEDGPIKPDAISIVTPDAYVVGIEIHS 584 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+R+F + G V +L R G+T +L G++R L +E+ + Sbjct: 585 GRNRIVRRIFESFGYEVTKLDRTTYAGLT-KKELPRGKWRFLDPKEVVKL 633 >UniRef50_Q7MMX9 Pseudouridine synthase n=43 Tax=Vibrionaceae RepID=Q7MMX9_VIBVY Length = 347 Score = 282 bits (723), Expect = 6e-75, Method: Composition-based stats. Identities = 72/230 (31%), Positives = 125/230 (54%), Gaps = 6/230 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL+K+I++ SR A + I RVT++G+ K+LP DV DG P+A + P Sbjct: 8 RLNKYISETGFCSRREADKLIEQGRVTINGK-QPEMGTKVLPGDDVCVDGKPVAAKEKPV 66 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y LNKP G C+T+ ++ F+ ++ GRLD + GL+ +T+DG ++I Sbjct: 67 YIALNKPTGITCTTERNIPGNIVDFI--GHKKRIFPIGRLDKPSDGLIFLTNDGDIVNKI 124 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEG 181 +H EK Y+V ++ P+ + + + GV + + +T P + T R+ +++G Sbjct: 125 LRAGNHHEKEYVVRVDKPITPEFIKAMSSGVNILD--TVTLPCKVTQETKFSFRIVLTQG 182 Query: 182 RYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 Q++RM A+G V +L R RI I+LD + G++R LT++E+ ++ Sbjct: 183 LNRQIRRMCEALGYEVFKLRRVRIMNISLDG-IPNGKWRYLTDDEVTEIL 231 >UniRef50_A6LIA0 Pseudouridine synthase n=23 Tax=Bacteroidales RepID=A6LIA0_PARD8 Length = 495 Score = 282 bits (723), Expect = 7e-75, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 121/232 (52%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+KF++ SR A I+ V V+ +V K+ + V ++ P+ Sbjct: 260 IRLNKFLSNAGVCSRREADEFIQKGAVKVNDVVVTELGTKITRQDVVTFNEKPVQI-ESK 318 Query: 61 RYFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ V ++DDP TV+ + +++ GRLD +TTG++L+T+DG + Sbjct: 319 VYIVLNKPKNCVTTSDDPQERLTVMDLVKNACQERIYPVGRLDRNTTGVLLLTNDGDLAS 378 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLT-KPAVLEVITPTQVRLTI 178 ++T P +K Y V L+ VA + E+ A G++L + + + +QV + I Sbjct: 379 KLTHPSFKKKKIYHVWLDKNVAIEDMEKIANGLELEDGEIHADAISYASEDDKSQVGIEI 438 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+R+F ++G HV +L R G+T +L G++R L E E+ ++ Sbjct: 439 HSGRNRIVRRIFESLGYHVTKLDRVYFAGLT-KKNLGRGKWRYLNEREVNAL 489 >UniRef50_B9KC52 Pseudouridine synthase n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9KC52_THENN Length = 240 Score = 282 bits (723), Expect = 7e-75, Method: Composition-based stats. Identities = 90/229 (39%), Positives = 133/229 (58%), Gaps = 4/229 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLD++++ + +R I+ RVTV+ V + A+KL + V DG + Sbjct: 1 MRLDRYLSNRGIGTRKEVRALIKHGRVTVNDRTVLDPAYKLSDKDVVKVDGKVIDLPE-K 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y + KP GYV ST DP T++ FL + + GRLD D GL+L+T+DG+++HR Sbjct: 60 VYILFYKPAGYVTSTRDPHSETIMEFLPD--IKGIFPVGRLDKDAEGLLLVTNDGEFAHR 117 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 + SPR EK Y+V +E + +D E+ +GV L + K +E I+ V++ I+E Sbjct: 118 VISPRWKVEKEYVVKVEGEITEDKLEKLRRGVSLRDG-FFAKAKHVEKISNDTVKIVITE 176 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 G+YHQVKRM AAVG + L R RIGG+ L ++ PGEYR L+EEE+ Sbjct: 177 GKYHQVKRMMAAVGLKTIHLKRVRIGGLRLPQEMKPGEYRFLSEEEVRQ 225 >UniRef50_B8G2X0 Pseudouridine synthase n=3 Tax=Bacteria RepID=B8G2X0_CHLAD Length = 567 Score = 281 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 83/235 (35%), Positives = 123/235 (52%), Gaps = 11/235 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLL-PEHDVAYDGNPLAQQHGP 60 RL K +A SR I RVTV+G +V ++ +V DG PL Sbjct: 5 RLQKVLASAGIASRRDCEELIAAGRVTVNGRVVTVPGTRVDLEHDEVLVDGQPLRMPAKR 64 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y ML+KP G V + +DP PTV+ +D P ++ GRLD+D+ GL+L+TDDG+ ++ Sbjct: 65 TYIMLHKPAGVVSTAEDPHGRPTVVDLVDVP--ARVFPVGRLDLDSEGLILLTDDGELAY 122 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT----QVR 175 +T P EK Y V L+ + D + GV L E +T PA +E++ T VR Sbjct: 123 ALTHPSFEVEKEYRVLLDRALTPDALRSWRNGVLLEGE--MTAPAWVELLETTPEGVWVR 180 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + + EGR Q++ + +G V L R R G + L DL P +R LT+EE+A++ Sbjct: 181 IVLREGRKRQIRAVAKLLGYEVRRLVRVREGPLQL-GDLPPRAWRHLTDEEVAAL 234 >UniRef50_B2RK43 Pseudouridine synthase n=1 Tax=Porphyromonas gingivalis ATCC 33277 RepID=B2RK43_PORG3 Length = 439 Score = 280 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 124/232 (53%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+KF++ SR A I +TV+GE+V ++ + +V Y + Sbjct: 204 IRLNKFLSNAGVCSRREADLLIEKGEITVNGEVVTELGRRITRQDEVIYKDKRVEI-ESK 262 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ V ++DDP+ TV+ + +++ GRLD +TTG++L+T+DG + Sbjct: 263 VYVLLNKPKNCVTTSDDPECRTTVMDIVRYACPERIYPVGRLDRNTTGVLLITNDGDLAS 322 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLT-KPAVLEVITPTQVRLTI 178 ++T P +K Y V L V+ + ++ A GV+L + + + ++ +QV + I Sbjct: 323 KLTHPSFKKKKIYHVWLNKDVSIEDMQKIADGVELDDGEIHADAISYVKEDDLSQVGIEI 382 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+R+F +G VV+L R G+T +L G++R L E+E+ ++ Sbjct: 383 HSGRNRIVRRLFEHLGYRVVKLDRVYFAGLT-KKNLPRGKWRYLNEQEVNNL 433 >UniRef50_C2MA52 Pseudouridine synthase n=1 Tax=Porphyromonas uenonis 60-3 RepID=C2MA52_9PORP Length = 472 Score = 280 bits (718), Expect = 2e-74, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 116/232 (50%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+KF++ SR A + I RV V+G +V ++LP V D P+ Sbjct: 206 IRLNKFLSNSGLCSRRTADQYIAAGRVKVNGAVVSELGSQVLPTDQVMVDDKPVTL-EAK 264 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ V + DP+ TV+ + +++ GRLD +TTG++L+T+DG + Sbjct: 265 VYVLLNKPKNCVTTLTDPEGRRTVMDLVHNACTERIYPIGRLDRNTTGILLLTNDGDLAV 324 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLT-KPAVLEVITPTQVRLTI 178 R+ P +K Y V L+ V + + A G +L + + + + T +V + I Sbjct: 325 RLMHPAFRKKKIYEVALDKEVTVEHMQMIAHGFELEDGEIHADAISYITGQTHDKVGIEI 384 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+R+F +G VV L R G+T DL G +R LT EE+ + Sbjct: 385 HSGRNRIVRRIFEHLGYRVVHLDRVYYAGLT-KKDLPRGRWRYLTPEEVRYL 435 >UniRef50_P35159 Ribosomal large subunit pseudouridine synthase B n=200 Tax=Bacteria RepID=RLUB_BACSU Length = 244 Score = 280 bits (718), Expect = 2e-74, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 124/233 (53%), Gaps = 6/233 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K IA SR A I+ +V V+G++V K+ + +G + ++ P Sbjct: 3 RLQKVIAHAGVASRRKAEELIKEGKVKVNGKVVTELGVKVTGSDQIEVNGLKVEREE-PV 61 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 YF+L KP+G + + D V+ + + +++ GRLD DT+GL+L+T+DG++++++ Sbjct: 62 YFLLYKPRGVISAAQDDKGRKVVTDFFKNIPQRIYPIGRLDYDTSGLLLLTNDGEFANKL 121 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP----TQVRLT 177 P++ +KTY+ ++ + + +G++L K A L + + ++LT Sbjct: 122 MHPKYEIDKTYVAKVKGIPPKELLRKLERGIRLEEGKTAPAKAKLLSLDKKKQTSIIQLT 181 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I EGR QV+RMF A+G+ V++L RE + L L G+ R LT E+ + Sbjct: 182 IHEGRNRQVRRMFEAIGHEVIKLKREEYAFLNLRG-LHTGDARELTPHEVKRL 233 >UniRef50_Q11YT0 Pseudouridine synthase n=9 Tax=Bacteroidetes RepID=Q11YT0_CYTH3 Length = 562 Score = 280 bits (718), Expect = 2e-74, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 119/232 (51%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+K+I+ SR A + I V V+G +V +K+ P V Y+ L Sbjct: 329 IRLNKYISNSGICSRREADQLIIEGTVKVNGIVVTELGYKVKPGDSVKYNNKVLN-PEKS 387 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ ++ + +D D TV+ + +++ GRLD +TTGL+L T+DG+ + Sbjct: 388 VYVLLNKPKDFITTMEDENDRKTVMQLVANATKERIYPVGRLDRNTTGLLLFTNDGELAQ 447 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKG-VQLHNEKDLTKPAVLEVITPTQVRLTI 178 ++T P + +K Y V L+ P+ + ++ G + L + A + + + + I Sbjct: 448 KLTHPSNKVKKIYEVELDKPITAEDFDKIVDGKIHLFDGPVKVDEAAIISPSKKIIGIEI 507 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EGR V+R+F ++G V++L R G+T ++ G +R LT E+ + Sbjct: 508 HEGRNRIVRRIFESLGYDVLKLDRVMYAGLT-KKNIPRGSWRYLTATEVNKI 558 >UniRef50_Q65HX7 Pseudouridine synthase n=5 Tax=Firmicutes RepID=Q65HX7_BACLD Length = 244 Score = 280 bits (717), Expect = 3e-74, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 122/233 (52%), Gaps = 6/233 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K IA SR A I+ RVTV+G+ VR K+ + +G L + P Sbjct: 3 RLQKVIAHAGIASRRKAEELIKEGRVTVNGKTVRELGVKVSSSDRIEVNGVQLESEE-PV 61 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 YF+L KP+G + + D V+ V +++ GRLD DT+GL+L+T+DG +++++ Sbjct: 62 YFLLYKPRGVISAVKDDKGRKVVTDFFTEVEERIYPIGRLDYDTSGLLLLTNDGDFANKL 121 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP----TQVRLT 177 P++ KTY+ L+ + ++ +GV+L + K L + + V++T Sbjct: 122 MHPKYEINKTYVAKLKGIPLKENLKKLERGVRLEDGKTAPAKVKLLSLDKKKQTSIVQIT 181 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I EGR QV+RMF A+G+ V++L RE + L L GE R LT E+ + Sbjct: 182 IHEGRNRQVRRMFEAIGHEVLKLKREEYAFLNLAG-LKTGEKRELTPHEVKRL 233 >UniRef50_A3HY40 Pseudouridine synthase n=1 Tax=Algoriphagus sp. PR1 RepID=A3HY40_9SPHI Length = 434 Score = 280 bits (717), Expect = 3e-74, Method: Composition-based stats. Identities = 70/230 (30%), Positives = 118/230 (51%), Gaps = 3/230 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL+K+IA SR A I V+V+G++V K+ V Y G + P Sbjct: 203 RLNKYIANSGICSRREADDLIAKGLVSVNGKVVTELGLKVSKFDRVVYQGKKIN-PEKPV 261 Query: 62 YFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +LNKP+ ++ +TDDP + TV+ + ++ GRLD +TTGL+L T+DG+ + + Sbjct: 262 YVLLNKPKDFITTTDDPLERKTVMALVGNACEERIFPVGRLDRNTTGLLLFTNDGELAAK 321 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 ++ P + +K Y VTL+ P+ + + +G+ L + + + + + L I Sbjct: 322 LSHPSNQIKKIYQVTLDKPLTHNDEKDILEGLTLEDGEVEVDDMQVLSVDRKILGLEIHV 381 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G+ V+R+FA +G V L R G+ DL G YR L+E+E+ + Sbjct: 382 GKNRIVRRIFAHLGYEVTALDRVMYAGLD-KKDLKRGNYRFLSEQEVIKL 430 >UniRef50_C3JBA6 Pseudouridine synthase n=2 Tax=Bacteria RepID=C3JBA6_9PORP Length = 459 Score = 279 bits (715), Expect = 5e-74, Method: Composition-based stats. Identities = 73/232 (31%), Positives = 127/232 (54%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+KF+A SR +A + I V+V+GEIV + E ++ DG P++ Sbjct: 224 LRLNKFLASSGVCSRRVADQLIVDGHVSVNGEIVTQLGKHVTREDFISVDGKPVSI-EKK 282 Query: 61 RYFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ V ++ DP+ T + + +++ GRLD +TTGL+L+T+DG + Sbjct: 283 IYVLLNKPRNCVTTSSDPEKRLTAIDLVRNACNERIYPVGRLDRNTTGLLLLTNDGDLAA 342 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLT-KPAVLEVITPTQVRLTI 178 ++ P++ +K Y VTL+ PV+ + +Q A G++L + + + ++ V + I Sbjct: 343 KLMHPKYEKKKIYQVTLDKPVSVEHMQQIASGIELEDGEIHADAISYVDENNLAIVGIEI 402 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+R+F +G V +L R G+T DL G +R LTE+E+ ++ Sbjct: 403 HSGRNRIVRRIFKHLGYRVYKLDRVYFAGLT-KKDLPRGRWRYLTEDEVRNL 453 >UniRef50_D1Y0J0 Pseudouridine synthase n=1 Tax=Prevotella bivia JCVIHMP010 RepID=D1Y0J0_9BACT Length = 555 Score = 279 bits (714), Expect = 7e-74, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 125/232 (53%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+KF+A SR A I +VTV+GE++ K+L +V + ++ Sbjct: 320 LRLNKFLANAGVCSRREADDFILAGQVTVNGEVINELGTKILRTDEVKFQDKLVSL-EKK 378 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ YV ++DDP TV+ + + +++ GRLD +TTG++L T+DG + Sbjct: 379 VYVLLNKPKDYVTTSDDPQQRKTVMDLVKDACPERIYPVGRLDRNTTGVLLFTNDGDLAS 438 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL-EVITPTQVRLTI 178 ++T P+ +K Y V L+ P+ + ++ + G++L + + QV + I Sbjct: 439 KLTHPKFLKKKVYHVFLDKPITANELQKISDGIELEDGEIKADAIEYANPEDQAQVGIEI 498 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G+ V+R+F ++G VV+L R G+T ++ G++R LTE+E+ + Sbjct: 499 HSGKNRIVRRIFESLGYRVVKLDRVMFAGLT-KKNVRRGDWRFLTEKEVEML 549 >UniRef50_C7M7R0 Pseudouridine synthase n=4 Tax=Bacteroidetes RepID=C7M7R0_CAPOD Length = 387 Score = 279 bits (714), Expect = 7e-74, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 123/232 (53%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+K+IA SR A I VTV+GE++ +++ P +V +DG L+ Sbjct: 154 VRLNKYIADAGICSRRNADMYISAGNVTVNGEVMTTLGYRVKPTDEVRFDGKLLSS-EKK 212 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+G++ +T+D TV+ + ++ GRLD TTGL+L+T+DG+ + Sbjct: 213 EYILLNKPKGFITTTNDEKGRKTVMDLVANATNVRILPVGRLDRATTGLLLLTNDGELTK 272 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNE-KDLTKPAVLEVITPTQVRLTI 178 ++T P H K Y V L+ + + G++L + ++ + + + ++ + I Sbjct: 273 KLTHPTHGVRKIYHVILDRKLDYKDFMKVQDGLELEDGLIEVDEISYVNDKPKNEIGIKI 332 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+R+F +G V +L R G+T DL G +R LT++E+ ++ Sbjct: 333 HSGRNRIVRRIFEHLGYQVEKLDRVVFAGLT-KKDLPRGHWRRLTQQEVINL 383 >UniRef50_C8QZD4 Pseudouridine synthase n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8QZD4_9DELT Length = 240 Score = 277 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 77/234 (32%), Positives = 116/234 (49%), Gaps = 8/234 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL KF+A+ SR A I RV VDG V + PE V +DG P+ Sbjct: 4 RLQKFLARAGIASRRKAEEYIAQGRVQVDGRPVAQMGLTIDPERQQVTFDGQPVLPPSRK 63 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 +LNKP GYV + DP ++ L +L GRLD+DT G +L+T+DG+ + Sbjct: 64 LTVLLNKPAGYVTTMADPQGRPIVTSLINEPGLRLFPVGRLDLDTEGALLLTNDGELAQN 123 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT----PTQVRL 176 I P +TY T++ + +Q +G+ L + T PA + + T + + Sbjct: 124 ILHPSRQINRTYHATVKGRPNREALQQLRRGIMLEGRR--TWPARIRELRRNQESTTLEV 181 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I EGR QV++MFAA+ + V++L R GG+ L L G YR L+ E++ + Sbjct: 182 IIHEGRKRQVRKMFAAINHPVLQLKRVAYGGLRL-GSLPTGRYRRLSPEDLQLL 234 >UniRef50_C4Z9Y4 Pseudouridine synthase n=16 Tax=Bacteria RepID=C4Z9Y4_EUBR3 Length = 250 Score = 277 bits (710), Expect = 2e-73, Method: Composition-based stats. Identities = 82/235 (34%), Positives = 134/235 (57%), Gaps = 6/235 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RLDKF+++ +R+ + I+ ++ ++G + K+ + +V+ +G + + Sbjct: 12 IRLDKFLSEMGLGTRSEVKKLIKTGQIAINGTVAAKPETKVDTDADEVSVNGR-IVKYQR 70 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y++ NKP G V +T D H TV+ ++ + V L GRLDIDT GL+L+T+DG SH Sbjct: 71 YEYYLFNKPSGCVSATCDNVHDTVMDYITDAVHDDLFPVGRLDIDTEGLLLITNDGALSH 130 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP---TQVRL 176 + SP H KTY ++ V D +F +G+ + E+ TKPA L + +++ L Sbjct: 131 ELLSPSKHVAKTYYARIDGEVTLDDIIRFKEGIDI-GEEKPTKPAELVIKKSGSVSEIEL 189 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 TI+EG++HQVKRMF A+G V+ L R +G + L DL G YR LT+ E ++ Sbjct: 190 TITEGKFHQVKRMFEALGKRVIYLKRISMGPLKLPDDLKTGTYRALTQAETDMLM 244 >UniRef50_Q2NSN0 Pseudouridine synthase n=7 Tax=Gammaproteobacteria RepID=Q2NSN0_SODGM Length = 235 Score = 277 bits (710), Expect = 2e-73, Method: Composition-based stats. Identities = 165/228 (72%), Positives = 186/228 (81%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF++QQLGVSRA+ RE+R RVTVDGEI++ AF+L PEH V +DGN L Q Sbjct: 1 MRLDKFLSQQLGVSRALVARELRAKRVTVDGEIIKQGAFQLRPEHQVRFDGNLLHQILTA 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 RYFMLNKPQGYVCSTDDPDHPT+LYF+DEPV KLHAAGRLDIDTTGLVL+TDDGQWS+R Sbjct: 61 RYFMLNKPQGYVCSTDDPDHPTILYFIDEPVPDKLHAAGRLDIDTTGLVLLTDDGQWSYR 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +TSPRHHCEK YLVTLE P+A + QFA G+ L EK T+PA L ++P +VRLTISE Sbjct: 121 LTSPRHHCEKDYLVTLEQPLAAEITAQFAAGILLRGEKLPTRPARLATLSPLKVRLTISE 180 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 GRYHQVKRMFAAVGN VV LHRERIG I LDA L PGEYR LT E+A Sbjct: 181 GRYHQVKRMFAAVGNRVVALHRERIGAIVLDAHLQPGEYRALTAGEVA 228 >UniRef50_A8ZRV1 Pseudouridine synthase n=3 Tax=Desulfobacteraceae RepID=A8ZRV1_DESOH Length = 241 Score = 277 bits (709), Expect = 3e-73, Method: Composition-based stats. Identities = 83/232 (35%), Positives = 122/232 (52%), Gaps = 6/232 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL KF++ SR A I RV V+G++V K+ PE DV +DG+ + Sbjct: 10 IRLQKFLSGAGVCSRRRAEVYIAEGRVAVNGQVVTELGTKVDPESDDVMFDGHRVTLAES 69 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y LNKP GYV S TV+ + V ++ GRLD + GL+LMT DG Sbjct: 70 HVYIALNKPPGYVTSCLQKQETTVMELV--AVDQRVFPVGRLDKPSCGLLLMTSDGGLHQ 127 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 R++ P EK Y V + PV+D + +G+ + K T+PA ++ ++ + + + Sbjct: 128 RLSHPSFDHEKEYDVACDRPVSDADLDAMRRGMVITGRK--TRPAKVKRLSDRRFLIILQ 185 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 EGR Q++RM +GN VV L R RI I L DLA G +R LTEEE +++ Sbjct: 186 EGRNRQIRRMAEMLGNRVVLLRRIRIAHIHL-GDLAEGRWRYLTEEEKKALL 236 >UniRef50_C7MNA2 Pseudouridine synthase n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MNA2_CRYCD Length = 296 Score = 277 bits (709), Expect = 3e-73, Method: Composition-based stats. Identities = 81/236 (34%), Positives = 113/236 (47%), Gaps = 9/236 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 +RL KF+A+ SR + R I RV V+G ++ K+ P +V DG + Sbjct: 50 LRLQKFLARAGVASRRGSERLISAGRVAVNGIVITELGTKVDPLVDEVCVDGAIVTWGAP 109 Query: 60 PRYFMLNKPQGYVCSTDD-PDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 LNKP G + + D V + L GRLD DTTGL+L + DG Sbjct: 110 AVTLALNKPAGIITTMKDLRGRRCVADIMPTEQYPGLFPIGRLDQDTTGLLLFSTDGNLG 169 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TPTQV 174 + + P H K Y T+E + EQ A G+ L + +T PA + V+ + + Sbjct: 170 NALLHPSHGVSKVYRATIEGSIGQAALEQLASGILLDDG--MTAPARVSVVQAGKKHSVI 227 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 L + EGR HQVKRM AVG+ VV+LHR G I L LA G YR L E++ + Sbjct: 228 ELELHEGRKHQVKRMCQAVGHPVVKLHRASFGPIDLAG-LATGAYRRLEGAELSVL 282 >UniRef50_C6Y027 Pseudouridine synthase n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y027_PEDHD Length = 472 Score = 276 bits (707), Expect = 5e-73, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 122/233 (52%), Gaps = 5/233 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 +RL+++I+ SR A I V+V+GE+V K+ P + V Y+G L + Sbjct: 237 IRLNRYISNSGICSRRKADELIEAGVVSVNGEVVSELGHKIDPVKDQVRYNGELLK-REK 295 Query: 60 PRYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y +LNKP+ Y+ +TDDP + TV+ +++ +++ GRLD +TTGL+LMT+DG + Sbjct: 296 KIYVLLNKPKDYITTTDDPQERRTVMQLVEKASRERIYPVGRLDRNTTGLLLMTNDGDLA 355 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPA-VLEVITPTQVRLT 177 +++ P++ K Y V L ++ + G++L + + + +V + Sbjct: 356 DKLSHPKNGITKIYHVELSRSLSQGDLNKIQFGLELEDGIIKPDSVSYVTGGSKREVGIQ 415 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I G+ V+R+F +G VV+L R G +T DL G +R L E E+ + Sbjct: 416 IHSGKNRIVRRIFEHLGYDVVKLDRVVYGNLT-KKDLPRGRWRYLEEHELIQI 467 >UniRef50_C8WXC0 Pseudouridine synthase n=3 Tax=Firmicutes RepID=C8WXC0_ALIAD Length = 273 Score = 276 bits (707), Expect = 5e-73, Method: Composition-based stats. Identities = 84/237 (35%), Positives = 121/237 (51%), Gaps = 12/237 (5%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL K +A SR I RV+VDGEIV K+ P +A DG P+ P Sbjct: 3 RLQKVLAHAGVASRRKCEELILAGRVSVDGEIVTQLGAKVDPSRQRIAVDGVPIEL-EQP 61 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 +LNKP Y+ + DP + L P+ +++ GRLD DT+GL+L T+DG+ + R Sbjct: 62 VVLVLNKPVAYLSTVSDPLGRRTVMQLLPPIRERVYPVGRLDYDTSGLLLFTNDGELTQR 121 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP-------TQ 173 + P EK Y V++ V +T +GV+L + +T PA +EV+ Sbjct: 122 LLHPSREIEKVYRVSVRGIVDRETRRALMEGVELEDG--VTAPAKVEVLRQADREDGVAV 179 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 V L I EGR QV+RMF +G V+ L R G ++L L GE+R LT+EE ++ Sbjct: 180 VHLAIHEGRNRQVRRMFERLGLPVLRLKRIAFGPVSL-GHLKTGEWRALTQEEWVAL 235 >UniRef50_A8SYF2 Pseudouridine synthase n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SYF2_9FIRM Length = 239 Score = 275 bits (706), Expect = 5e-73, Method: Composition-based stats. Identities = 89/237 (37%), Positives = 134/237 (56%), Gaps = 9/237 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 MRLDKF+ + SR+ + I+ V+V+G ++ K+ + + Y+G L Sbjct: 1 MRLDKFLVEMNIGSRSQVKQYIKKGMVSVNGTNAASSDMKINEDTDTIKYNGKQLC-YSK 59 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 RYF+LNKP G V +T D H TV+ L+ L GRLD+DT GL+++T+DG+ +H Sbjct: 60 YRYFLLNKPAGCVSATKDNVHQTVIDLLNGENTKDLFPVGRLDLDTEGLLIITNDGRLAH 119 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI------TPTQ 173 + SP HH KTY ++ V D T F +G+ + + T PA L++I ++ Sbjct: 120 HLLSPAHHIAKTYYADIDGYVDDQTISLFKQGIDI-GDDTPTLPASLKIIEADRSTGSSR 178 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + LTI+EGR+HQVKRMF AV V L R +G + + DL G YR LT EE++++ Sbjct: 179 IELTITEGRFHQVKRMFQAVNMSVTFLKRISMGNLHIADDLPTGSYRELTPEEVSAL 235 >UniRef50_A4CJ52 Pseudouridine synthase n=5 Tax=cellular organisms RepID=A4CJ52_9FLAO Length = 303 Score = 275 bits (706), Expect = 6e-73, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 123/232 (53%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+K+IA SR A I VTV+G+ + +K+ P +V +DG L + Sbjct: 70 IRLNKYIANAGICSRREADTYIAAGNVTVNGKTITEMGYKVQPTDEVRFDGRLLQ-RERK 128 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ ++ +T D TV+ + +L GRLD +TTGL+L T+DG+ + Sbjct: 129 EYVLLNKPRNFITTTRDEKGRRTVMELISRASNARLVPVGRLDRNTTGLLLFTNDGELAK 188 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPA-VLEVITPTQVRLTI 178 ++T P+H K Y V L+ + +G++L + + A ++ + +V + + Sbjct: 189 KLTHPKHGVRKIYHVELDKTFKSADLGKLREGLELEDGRIEVDEASYIDGASKKEVGVEL 248 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+R+F +G VV+L R + G+T DL G +R LTE+E+ ++ Sbjct: 249 HSGRNRIVRRIFEHLGYQVVKLDRVVLAGLT-KKDLPRGHWRHLTEQEVINL 299 >UniRef50_A4BW35 Pseudouridine synthase n=3 Tax=Flavobacteriaceae RepID=A4BW35_9FLAO Length = 305 Score = 275 bits (705), Expect = 7e-73, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 120/232 (51%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+K+IA SR A I V V+G +V +K+ P+ V +DG + Sbjct: 72 IRLNKYIANSGVCSRREADTYIEHGSVEVNGNLVTEMGYKVQPDDVVRFDGTGIT-PEQK 130 Query: 61 RYFMLNKPQGYVCSTDD-PDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 +Y +LNKP+ Y+ + DD TV+ + +++ GRLD +TTGL+L T+DG+ + Sbjct: 131 KYILLNKPKNYITTMDDDRGRKTVMDLISNATKERIYPVGRLDRNTTGLLLFTNDGELAK 190 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEK-DLTKPAVLEVITPTQVRLTI 178 ++T P+H K Y +L+ + E+ V + +K + + ++ ++V + I Sbjct: 191 KLTHPKHDVRKLYHASLDKKLELKDLEKLRGEVLIEGKKVFIDAVSYVDGQPKSEVGIEI 250 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+++F +G V +L R +T +L G +R LT +E++++ Sbjct: 251 HSGRNRIVRKIFEHLGYKVSKLDRVIFAELT-KRNLPRGRWRELTNQELSNL 301 >UniRef50_Q0AX41 Pseudouridine synthase n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AX41_SYNWW Length = 239 Score = 275 bits (705), Expect = 8e-73, Method: Composition-based stats. Identities = 79/235 (33%), Positives = 128/235 (54%), Gaps = 8/235 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL K++A+ SR A R I +V V+ + + AF L P V + G + +Q Sbjct: 1 MRLAKYLAESGISSRRQAERLITQGKVKVNDKTITELAFTLKPGDRVEFAGK-IIEQTDK 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +L+KP GY+ S DP + L V ++ GRLD DT GL+L+++DG++S+ Sbjct: 60 IYLLLHKPAGYISSLADPQGRPRVIDLLSAVNTRVFPVGRLDYDTEGLLLLSNDGEFSNL 119 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP----TQVRL 176 +T PR+ K Y ++ V DT Q +GV L + +T PA + +++ + + L Sbjct: 120 MTHPRYLIPKKYEAWVQGLVKPDTIRQLEQGVALEDG--ITAPARVRLLSSKKGQSLLEL 177 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 I EG+ Q+KRM AVG+ V +L R + +TL+ + G++R LT E+ S++ Sbjct: 178 EIHEGKKRQIKRMCLAVGHRVTKLKRTALAFLTLEG-VPRGQFRFLTASEVESLI 231 >UniRef50_C2D7I2 Pseudouridine synthase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7I2_9ACTN Length = 285 Score = 275 bits (705), Expect = 8e-73, Method: Composition-based stats. Identities = 78/255 (30%), Positives = 122/255 (47%), Gaps = 27/255 (10%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 MRL +F+A+ SR + + I RV V+G+ VR K++P+ V DG + Sbjct: 25 MRLQRFLARAGVASRRGSEKLISAGRVCVNGKQVRVLGTKVMPQYDHVTVDGKEYVLGND 84 Query: 60 PRYFMLNKPQGYVCSTDDPDH-PTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y +LNKP + + DP P V + L GRLD DTTG++L T +G Sbjct: 85 HVYLLLNKPSQVLTTMSDPFGFPCVASLVPCDDYPGLFPVGRLDSDTTGVLLFTTNGNMG 144 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT-------- 170 +R+ P HH KTY+ +E + ++ ++G+ L + +T P + IT Sbjct: 145 NRLLHPSHHVWKTYVALIEGKLTSSQMQKLSQGIMLEDG--MTSPCFIRTITQDEPCTHL 202 Query: 171 ---------------PTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLA 215 + L I EGR HQVKRM +G+ V++LHR + G + L+A + Sbjct: 203 DKNHSLFDDMRLNAASSLCELKIHEGRNHQVKRMLQEIGHPVIKLHRFQFGPLCLNAQIP 262 Query: 216 PGEYRPLTEEEIASV 230 G +R T++EI + Sbjct: 263 LGSWRMCTQQEIHDL 277 >UniRef50_D1CFA0 Pseudouridine synthase n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CFA0_THET1 Length = 253 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 127/233 (54%), Gaps = 6/233 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL K +AQ SR A R I RV+V+G IV PE ++ DG + QQ Sbjct: 5 IRLHKLLAQMGVASRRAAERMIAEGRVSVNGRIVNTPGAMASPEDEIRVDGKLVRQQPKM 64 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 RY +LNKP G + + D TV+ L + +++ GRLD D+ GL+L+T+DG+ + Sbjct: 65 RYILLNKPAGVLSTAKDERGRKTVIDLL--GQSNRVYPVGRLDKDSEGLMLLTNDGELAQ 122 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRLT 177 RIT PR+ K Y+V +E +D + + +GV+L + A + +++ +T Sbjct: 123 RITHPRYGVHKQYMVEVEGYFSDRSLQDLLQGVELEDGFSKPLDAKIISRSRDKSKLLIT 182 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EGR QV+R AA+G V L R +G ++L +L PGEYR L+++E + Sbjct: 183 MGEGRKRQVRRTLAALGYKVKRLTRVALGPLSL-GNLKPGEYRELSDQEAKWL 234 >UniRef50_C9KIR7 Pseudouridine synthase n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KIR7_9FIRM Length = 250 Score = 274 bits (703), Expect = 1e-72, Method: Composition-based stats. Identities = 85/240 (35%), Positives = 128/240 (53%), Gaps = 14/240 (5%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL K I+Q SR A + I RV VDG++VR K+ P H + DG +A + Sbjct: 6 RLQKIISQAGIASRRAAEKMILEGRVRVDGQVVRELGTKVDPAAHTILVDGKKIAGEEQH 65 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +LNKP+GY+ + D + L V +++ GRLD +T GL+L+T+DG + Sbjct: 66 VYLLLNKPKGYLSTAKDDRGRRTVLDLLPEVRERVYPVGRLDNNTEGLLLITNDGALMNG 125 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP--------- 171 + PR EKTY + + ++ + G+ L + +T PA + ++ Sbjct: 126 LLHPRFEVEKTYHAGVTGKLTEEKLQMLRDGLLLEDG--MTAPAKVSLLPEREPGERVRG 183 Query: 172 -TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 T+ +TI EGR QV+RMFAAVG V L R R G+TL +A G++R LTEEE++S+ Sbjct: 184 LTRAAITIHEGRNRQVRRMFAAVGCDVKSLKRVRFAGLTLKG-VARGQHRALTEEEVSSL 242 >UniRef50_A1ZI67 Pseudouridine synthase n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZI67_9SPHI Length = 391 Score = 274 bits (703), Expect = 1e-72, Method: Composition-based stats. Identities = 70/231 (30%), Positives = 125/231 (54%), Gaps = 3/231 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL++FI+ SR A + I ++V+G+++ F++ P V Y G L ++ Sbjct: 159 MRLNRFISNSGVCSRREADKLIEMGMISVNGKVITEMGFQVSPTDTVKY-GKRLLKREKF 217 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ ++ +T+DP D TV+ + +++ GRLD +TTGL+L T+DG+ + Sbjct: 218 VYVLLNKPKDFITTTNDPQDRKTVMDLIKNSCDERIYPVGRLDRNTTGLLLFTNDGEVAK 277 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 +++ P H +K Y V L+ P+ D+ + A+GV L + + T V + I Sbjct: 278 KLSHPSHDVKKVYQVELDKPLKDEDLDSIAEGVILEDGYAAVDEIAILNPERTLVGVEIH 337 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+R+F + VV+L R G+ ++ G++R L+E+E+ + Sbjct: 338 IGRNRIVRRIFNHLDYEVVKLDRTMYAGLN-KKNIDRGDWRYLSEKEVIRL 387 >UniRef50_A1U6Q2 Pseudouridine synthase n=4 Tax=Gammaproteobacteria RepID=A1U6Q2_MARAV Length = 231 Score = 274 bits (702), Expect = 2e-72, Method: Composition-based stats. Identities = 108/229 (47%), Positives = 137/229 (59%), Gaps = 1/229 (0%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLD++++ +SR A + + RV VDGE R A ++ E V DG P+ Sbjct: 1 MRLDQYLSNGTELSRKEAKKVVSAGRVKVDGETCRQANRQVEAEQSVHLDGKPVNPPGD- 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y M++KP G + +T D PT L L +A ++H AGRLD DTTGL+L+T DGQWSH Sbjct: 60 IYLMMHKPAGVLSATTDSSQPTALDLLPRGLASRVHIAGRLDKDTTGLLLLTSDGQWSHA 119 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +TSPR C K+Y V L + + KGV L+ E T+PA + V + LTI E Sbjct: 120 VTSPRRECRKSYRVWLAEAIPEQACRALEKGVMLNGETTETRPAEVRVHNNQLIDLTIGE 179 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 GRYHQVKRM AAVGN V LHR RIG I LD LAPGE+R LT +EI S Sbjct: 180 GRYHQVKRMLAAVGNRVEALHRFRIGSIELDDKLAPGEFRALTYQEIRS 228 >UniRef50_A3ESK0 Pseudouridine synthase n=4 Tax=Bacteria RepID=A3ESK0_9BACT Length = 616 Score = 274 bits (701), Expect = 2e-72, Method: Composition-based stats. Identities = 80/235 (34%), Positives = 122/235 (51%), Gaps = 6/235 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL K +A + SR A IRG V V+G +V K+ PE V DG + + Sbjct: 18 IRLQKLLAHRGLASRRNAEEMIRGGLVKVNGIVVTVPGTKVHPETDRVTVDGKTVPVEPE 77 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 P F+ KP+G V + DPD T L + L GRLDI + G++L+T++G + Sbjct: 78 PFLFLFYKPKGIVSTLHDPDEKTTLKDFFPQINP-LIHVGRLDIQSEGVLLLTNNGDLAQ 136 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKG-VQLHNEKDLTKPAVLEVI--TPTQVRL 176 RI PR+ +TYLV ++ V + ++ G V+L E + T + R+ Sbjct: 137 RILHPRYEIPRTYLVKVQGVVKPEHLDRLRSGKVRLDGRPVQPLELEQERLTETNSWYRI 196 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 T++EGR +V+R+F A+ V++L R G + L L PGEYR +T EEIA ++ Sbjct: 197 TLTEGRNREVRRLFDALHYFVLKLTRIAFGNLDLAG-LEPGEYRLVTPEEIALLL 250 >UniRef50_UPI000196BAD7 hypothetical protein CATMIT_00510 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196BAD7 Length = 247 Score = 273 bits (699), Expect = 3e-72, Method: Composition-based stats. Identities = 74/233 (31%), Positives = 113/233 (48%), Gaps = 6/233 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K IAQ SR A I+ +VTV+GE+V K+ + + +G + + Sbjct: 4 RLQKVIAQSGYTSRRKAEELIQQGKVTVNGEVVTVLGTKVTKKDTICVNGKLIN-KEDKV 62 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y++ KP+ VC+ D T + +++ GRLD DTTG + MT+DG++++ I Sbjct: 63 YYLFYKPEKCVCTMSDEHDRTCVADYFADSNERVYPVGRLDYDTTGALFMTNDGEFANLI 122 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL----EVITPTQVRLT 177 P H EK Y V+++ + Q KG+ L K L + E T + + Sbjct: 123 MHPSSHLEKVYEVSVKGLLTKAEKNQLEKGIYLEGVKTLPCEIAITGNDEEHGTTMLLIR 182 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EG+ Q+K+MF VG+ V L R IG I L L PG YR L E+ + Sbjct: 183 LVEGKNRQIKKMFEEVGHPVKRLRRIMIGPIDLKG-LTPGTYRRLKPHEVNVL 234 >UniRef50_B0N6F1 Pseudouridine synthase n=3 Tax=Bacteria RepID=B0N6F1_9FIRM Length = 241 Score = 273 bits (699), Expect = 4e-72, Method: Composition-based stats. Identities = 81/235 (34%), Positives = 124/235 (52%), Gaps = 10/235 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K IA SR A I +V V+G++V K+ + +G PL Sbjct: 3 RLQKAIAASGYTSRRKAEDLIVQGKVEVNGKVVTELGTKVKQGDLITVEGKPLVG-ENKV 61 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y++ KP+G VC+ DD ++ V +++ GRLD DTTGL++M++DG++++ I Sbjct: 62 YYVFYKPKGCVCTLDDEFDRPIITDYFTEVKERIYPVGRLDFDTTGLIIMSNDGEFANMI 121 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP------TQVR 175 PR H EK Y V+++ + T + KGV L K T P ++V+ T ++ Sbjct: 122 MHPRSHLEKIYEVSIKGLITGPTLNKLEKGVYLEGVK--TLPCKIKVVDKDTEHKTTMLK 179 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + + EG+ QVK+MF +VG+ V LHR IGGI L L PG YR L +E+ + Sbjct: 180 IKLVEGKNRQVKKMFESVGHPVKRLHRVSIGGINLKG-LTPGRYRILKPQEVKDL 233 >UniRef50_Q1YVK2 Pseudouridine synthase n=3 Tax=Gammaproteobacteria RepID=Q1YVK2_9GAMM Length = 235 Score = 272 bits (697), Expect = 7e-72, Method: Composition-based stats. Identities = 114/231 (49%), Positives = 152/231 (65%), Gaps = 1/231 (0%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RLDK+I+ +SR R I+ VT+D E N A K+ + + +G+ ++ Sbjct: 2 LRLDKYISNATDLSRVEVKRYIKYGDVTIDDEKAINGAQKVSGDETICIEGSAISFAEN- 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 RYFMLNKP G V +T D ++ T L + E + +L AGRLDIDTTGL+L+TDDGQW+HR Sbjct: 61 RYFMLNKPAGVVSATKDSNNSTALDLIFEHRSDELQIAGRLDIDTTGLLLITDDGQWNHR 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +TSPR C+K Y VTL P+ D AE+ A GV L EK PA +E I V L+I+E Sbjct: 121 LTSPRSDCQKIYRVTLGIPITPDYAEKLANGVWLKGEKHPCLPATMEQIDDETVLLSIAE 180 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 G+YHQVKRMFAA+GNHV LHR ++GGI LD L PG+YR LT+ E+AS++ Sbjct: 181 GKYHQVKRMFAALGNHVEALHRTQVGGIILDESLEPGDYRALTDAEVASIM 231 >UniRef50_B5YJH7 Pseudouridine synthase n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJH7_THEYD Length = 237 Score = 272 bits (697), Expect = 7e-72, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 125/232 (53%), Gaps = 5/232 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL K ++ SR A I+ RVTV+G+I K PE + DG L + Sbjct: 4 RLQKILSDYGIASRRHAEELIKEGRVTVNGQIA-VIGQKADPEKDYIKVDGKLLIKPEPK 62 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y+ KP+ + + DP + + + ++++ GRLD D+ GL+L+T+DG+ +++ Sbjct: 63 VYYAFYKPRKVITALLDPQGRPTIRDFIKGIKFRIYPVGRLDFDSEGLLLLTNDGELAYK 122 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRLTI 178 + P EKTY+V ++ V +T E+ KG+++ + + L ++ + +++T+ Sbjct: 123 VMHPSSQIEKTYMVKVDGIVEPETIEKLRKGIKIEGKLAVPVSVHLVKKLKANSWIKITL 182 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EGR Q+++M VG+ V+ L R I G+ L DL PG+ RPLT+EEI + Sbjct: 183 HEGRKRQIRKMLERVGHPVIRLIRIAIDGVKL-GDLKPGQLRPLTKEEIEKL 233 >UniRef50_Q1D5Q2 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q1D5Q2_MYXXD Length = 745 Score = 272 bits (697), Expect = 7e-72, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 109/232 (46%), Gaps = 4/232 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL K++A+ SR A I RV V+ + V ++ P V DG + Sbjct: 5 RLQKYLARAGVASRRHAEELITAGRVAVNNKTVTELGSRVEPGTDLVTVDGTLVTPPDES 64 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 YF+L KP G V + DP + E +L GRLD D G +L TDDG +H+ Sbjct: 65 SYFLLYKPVGVVTTLSDPQGRPTVANYVEETGKRLFPVGRLDYDAEGALLFTDDGALAHK 124 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRLTI 178 +T P +TYL ++ T ++ GV+L + + T +++ + Sbjct: 125 LTHPSFQVPRTYLAKVKGAPDTATLDKLRGGVRLEDGMATPVSVSVFEAAERNTWLKIVV 184 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +EGR H +KR+ AAVG+ VV L R G+ ++ L PGE RPL E+ + Sbjct: 185 AEGRPHLIKRLCAAVGHPVVRLFRPSYAGVGVEG-LRPGELRPLKTSEVELL 235 >UniRef50_B2A4P2 Pseudouridine synthase n=2 Tax=Clostridia RepID=B2A4P2_NATTJ Length = 238 Score = 272 bits (696), Expect = 8e-72, Method: Composition-based stats. Identities = 79/232 (34%), Positives = 132/232 (56%), Gaps = 5/232 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 MRL KF+++ SR + I+ RVTV+G+++ K+ P+ V DG P+ Q+ Sbjct: 1 MRLQKFMSRAGIASRRKSEELIQQGRVTVNGQVITRLGTKINPDTDTVKVDGEPITQEES 60 Query: 60 PRYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y MLNKP+ Y+ S DDP TV+ + V +++ GRLD D+ GLVL+T+DG+ + Sbjct: 61 NVYIMLNKPKDYITSKDDPQGRKTVMDLI--QVKERVYPVGRLDYDSRGLVLLTNDGELA 118 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 +R+ P+++ KTY+V ++ D + G+ L + +++ + Sbjct: 119 NRLMHPKYNIPKTYMVKVDKLPLQDKLDNLVNGIYLEEGLCKADHVEILDTKNNILKIIL 178 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 SEGR Q++RM A++G V +L R+ +G +TL DL+ G YR LT++EI ++ Sbjct: 179 SEGRKRQIRRMLASLGIEVKDLKRDSLGTLTL-KDLSEGNYRKLTKDEIDNI 229 >UniRef50_C1F236 Pseudouridine synthase n=8 Tax=Bacteria RepID=C1F236_ACIC5 Length = 406 Score = 272 bits (696), Expect = 8e-72, Method: Composition-based stats. Identities = 80/241 (33%), Positives = 119/241 (49%), Gaps = 14/241 (5%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHGP 60 RL K +A SR A I RV V+G++V FK + DG L Sbjct: 25 RLQKILASAGVASRRKAEELILAGRVQVNGQVVTEMGFKADAASDHIRVDGKLLQGPEKL 84 Query: 61 RYFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVA--WKLHAAGRLDIDTTGLVLMTDDGQW 117 RYFMLNKP+GYV + DP+ TV+ F +L+ GRLD + GL+LMT+DG Sbjct: 85 RYFMLNKPKGYVTTVSDPEGRHTVMEFFHGRGKGGERLYPVGRLDYASEGLLLMTNDGAL 144 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLH-----NEKDLTKPAVLEVITPT 172 ++ +T H EK YLV + ++ EQ G+ + + +T PA + ++ Sbjct: 145 ANTLTKASSHVEKVYLVKVSGRPTEEQLEQIRAGIMIDRGRPGEGRVMTAPAGVRMVRDA 204 Query: 173 ---QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 LT+ EGR ++++MF G+ V ++ R G + L D+ PGE R L EE+ S Sbjct: 205 ENPWFELTLIEGRNREIRKMFEETGHFVEKIRRIGYGPLVL--DVEPGEVRELNPEEVDS 262 Query: 230 V 230 + Sbjct: 263 L 263 >UniRef50_A9KNY1 Pseudouridine synthase n=3 Tax=Firmicutes RepID=A9KNY1_CLOPH Length = 240 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 88/231 (38%), Positives = 131/231 (56%), Gaps = 3/231 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RLDK++A +R + IR RV V+G + K+ + D L+ Sbjct: 8 LRLDKYLADLSVGTRTEVKQMIRKGRVMVNGNTETSPETKVDSNHDKIFVDSRELSYVT- 66 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 YFMLNKP G V +++D TV+ +DE L GRLD DT GL+++T+DG +H Sbjct: 67 LEYFMLNKPAGVVSASNDKKQTTVVDLIDEAKRKDLFPVGRLDKDTEGLLIITNDGDLAH 126 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 ++ SP+ H +K Y L P+ + E FA G+++ +E+ PA LE I+ + +TI Sbjct: 127 QLLSPKKHVDKVYFAKLRDPLKKEDEEAFAAGLKI-DEEFTALPAKLERISEQEAYVTIR 185 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EG++HQ+KRMF A N V+ L R +G + LD L+ GEYR LTEEEI ++ Sbjct: 186 EGKFHQIKRMFEATRNEVIYLKRISMGSLVLDESLSLGEYRELTEEEIEAL 236 >UniRef50_C7GZ55 Pseudouridine synthase n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GZ55_9FIRM Length = 250 Score = 271 bits (694), Expect = 2e-71, Method: Composition-based stats. Identities = 80/248 (32%), Positives = 127/248 (51%), Gaps = 19/248 (7%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++K+IA+ SR A I+ RVTV G + + + +A DG P+ Q Sbjct: 1 MRINKYIAKCGICSRRKADELIKEGRVTVGGIPLLECGVNVDEDAVIAIDGRPIEIQKKT 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +NKP GYVC+ D +Y L + +L GRLD D+ GL+L+T+DG + + Sbjct: 61 VYIAMNKPCGYVCTVSDELGRRTVYDLLTDIDERLFTIGRLDKDSEGLILLTNDGDLAQK 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNE--------------KDLTKPAVL 166 + SP+ EK Y V + + ++ + G+ + E K TKPA + Sbjct: 121 LLSPKRKIEKNYEVVVRGVPGANDIKKLSGGITIDVEISQTKQNKPVKSIVKYHTKPAKI 180 Query: 167 EVITPTQ----VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPL 222 I Q + + I EG+ Q+++MF +G+ V++L R + GI L DL PGE+R L Sbjct: 181 FEIGQKQGDMKLSMIIKEGKKRQIRKMFDVIGHEVIKLKRVKFAGIEL-GDLRPGEFRHL 239 Query: 223 TEEEIASV 230 +E+E+ S+ Sbjct: 240 SEDEVRSL 247 >UniRef50_A3CPQ5 Pseudouridine synthase n=3 Tax=Firmicutes RepID=A3CPQ5_STRSV Length = 242 Score = 270 bits (692), Expect = 2e-71, Method: Composition-based stats. Identities = 81/236 (34%), Positives = 132/236 (55%), Gaps = 10/236 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++K+IA SR A IR +V+++G++VR A + V +G P+ Sbjct: 1 MRINKYIAHAGIASRRKAEELIRQGKVSINGQVVRELATNVKSGDRVEVEGQPI-YNEEK 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y++LNKP+G + S D + L V +++ GRLD DT+G++++T+DG ++ Sbjct: 60 VYYLLNKPRGVISSVSDDKGRKTVVELLPQVKERIYPVGRLDWDTSGILILTNDGDFTDE 119 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI------TPTQV 174 + PR+ +K Y+ ++ + +G+++ K TKPAV E+I + V Sbjct: 120 MIHPRNEIDKVYVARVKGLANKEVLRPLTRGIEIEGRK--TKPAVYEIIKVDPAKNRSVV 177 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +LTI EGR HQVK+MF AVG V +L R R G + L L PGEYR L+++E++ + Sbjct: 178 QLTIHEGRNHQVKKMFQAVGLQVDKLSRTRFGHLDLTG-LKPGEYRKLSKKEVSQL 232 >UniRef50_O67444 Uncharacterized RNA pseudouridine synthase aq_1464 n=4 Tax=Bacteria RepID=Y1464_AQUAE Length = 249 Score = 269 bits (689), Expect = 5e-71, Method: Composition-based stats. Identities = 79/234 (33%), Positives = 124/234 (52%), Gaps = 6/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +R++KF+++ SR A + I RV V+GE+VR+ K+ PE V DG P+ Q Sbjct: 4 VRINKFLSEAGVASRRKAEKLILEGRVKVNGEVVRSLGVKVNPEVDIVEVDGKPVKPQ-R 62 Query: 60 PRYFMLNKPQGYVCSTDD-PDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 RY +LNKP Y+ PD + L + + ++ GRLD +T GL+++T+DG+ + Sbjct: 63 KRYIILNKPCCYLTQLGRSPDGRKTIEELIKDIPERVFPVGRLDYNTEGLLILTNDGELA 122 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEV--ITPTQVRL 176 +RI PR+ K YL +E V T ++ +G++L + + T + + Sbjct: 123 NRILHPRYKLPKVYLALVEGKVDQKTLKRMKQGIELEDGFAKPDNIRIVRYEGKNTLLEI 182 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 T EGR H VKR A G+ V L R IG I L L+PG++R L + E+A + Sbjct: 183 TFHEGRKHLVKRFLGAFGHKVKRLKRIAIGPIKL-GKLSPGKWRELNQGELAQL 235 >UniRef50_B9MRL6 Pseudouridine synthase n=2 Tax=Clostridia RepID=B9MRL6_ANATD Length = 233 Score = 269 bits (689), Expect = 6e-71, Method: Composition-based stats. Identities = 100/228 (43%), Positives = 139/228 (60%), Gaps = 4/228 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 MRLDKF+ SR+ + IR VTV+G+ + FK+ PE + DG +A+ Sbjct: 1 MRLDKFLTHCGFGSRSQVKKLIREGIVTVNGKQIVEVDFKINPEEDIIEVDGR-VAKFSK 59 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWS 118 Y M+NKP+GYVCS ++ TV + + + ++ LH GRLD D GL+++TDDG+++ Sbjct: 60 QIYIMMNKPKGYVCSNEELASLTVFSLISDDLKYRDLHTVGRLDKDAEGLLIITDDGEYT 119 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 HR+ SP+ EK YLV LE V ++ +F G+ L + T PA +I T V+L I Sbjct: 120 HRVISPKKRIEKEYLVRLEKEVDEEKLNEFENGIILDDG-YKTLPAKYTIIDSTTVKLCI 178 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 EG+YHQVKRMF A+GN VV+L R RIGG+ LD L PGEYR + EE Sbjct: 179 YEGKYHQVKRMFEAIGNKVVDLKRLRIGGLNLDQSLKPGEYRVMKVEE 226 >UniRef50_A9KPL1 Pseudouridine synthase n=63 Tax=Bacteria RepID=A9KPL1_CLOPH Length = 477 Score = 269 bits (688), Expect = 7e-71, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 119/230 (51%), Gaps = 6/230 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +R++K++++ SR A I VT+DGE+ K+LP V ++++ Sbjct: 19 VRINKYLSESGICSRREADTRIAKGEVTIDGEVA-VMGSKVLPGQKVVLGKKEVSREEKM 77 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 +KP+G VC+T+ + ++ ++ + +++ GRLD D+ GL+ +T++G ++ Sbjct: 78 VLIAFHKPKGIVCTTEKREPDNIIDYI--KYSQRIYPIGRLDKDSEGLIFLTNNGDIVNK 135 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 I +H EK Y+VT+ P+ + A GV + + +TKP LE I R+ +++ Sbjct: 136 ILRAGNHHEKEYIVTVNKPITAAFLKGMAGGVPILD--TVTKPCTLEAIDKVTFRIILTQ 193 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G Q++RM V +L R RI + L L G YR LT++E+ + Sbjct: 194 GLNRQIRRMCEHFDYKVTKLVRIRIMNVNL-GRLKVGGYRNLTDKELEGI 242 >UniRef50_C9L6I1 Pseudouridine synthase n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L6I1_RUMHA Length = 271 Score = 268 bits (687), Expect = 1e-70, Method: Composition-based stats. Identities = 68/230 (29%), Positives = 124/230 (53%), Gaps = 6/230 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL+K+++ SR A R I RV VDG+ ++ ++ DG + ++ Sbjct: 1 MRLNKYLSDAGVCSRREADRLIEEKRVLVDGKPAVQ-GMQVEDFQEIKVDGKAIKREEKK 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 + +KP+G C+ + V+ +++ P+ +++ AGRLD D+ GL+L+T+ G+ ++ Sbjct: 60 VLLVFHKPKGIECTANPNVKKNVISYINYPI--RVYYAGRLDKDSEGLLLLTNQGELVNQ 117 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 I + EK YLVT++ PV ++ + +GV + +T+ +E + R+T+++ Sbjct: 118 IMKAGSYHEKEYLVTVDKPVTEEFLQSMREGVPVLG--TITRKCKVEKESEKVFRITLTQ 175 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G Q++RM +G VV+L R RI I L +L G YR T+EE+ + Sbjct: 176 GLNRQIRRMCNYLGYEVVKLKRIRIMNIEL-GNLPIGSYREATKEELDEL 224 >UniRef50_C8WGQ8 Pseudouridine synthase n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGQ8_EGGLE Length = 282 Score = 268 bits (686), Expect = 1e-70, Method: Composition-based stats. Identities = 84/265 (31%), Positives = 120/265 (45%), Gaps = 36/265 (13%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 MRL KF+A+ SR + + RVTV+G++V K+ P +VA DG + G Sbjct: 11 MRLQKFLARAGAASRRGSENLMTAGRVTVNGKVVTELGSKVDPLVDEVAVDGAVVRLADG 70 Query: 60 PRYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 P ML+KP G+V + DP TV + L GRLD DTTGL+L + DG+ Sbjct: 71 PVTIMLHKPAGFVTTMSDPQGRRTVAELVPTERYPGLFPIGRLDFDTTGLLLFSTDGELG 130 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL------------ 166 + + P+HH K YL +E + +G++L + + Sbjct: 131 NGLLHPKHHVTKRYLACVEGRPTERDLALLRRGIELDDGPTQPADVRVVEGGAARHAERL 190 Query: 167 ---------------------EVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERI 205 + VRL I EGR QVKRM AAVG+ V+ LHR+ Sbjct: 191 LEIPAAVPPRSSKEYAAVCEGRATRRSIVRLGIREGRKRQVKRMLAAVGHPVLALHRDSF 250 Query: 206 GGITLDADLAPGEYRPLTEEEIASV 230 G + L DL G +R L EE+A++ Sbjct: 251 GPLEL-GDLPRGAWRALDAEEVAAL 274 >UniRef50_C6X4T2 Pseudouridine synthase n=2 Tax=Flavobacteriaceae RepID=C6X4T2_FLAB3 Length = 371 Score = 268 bits (686), Expect = 1e-70, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 117/232 (50%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+K+IA SR A I V V+G +V +++ V +DG + P Sbjct: 139 IRLNKYIANSGICSRREADELITQGLVQVNGAVVTEMGYQVQKTDKVIFDGQGIT-PEKP 197 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+GY+ +T D TV+ + +++ GRLD TTG++L+T+DG + Sbjct: 198 VYVLLNKPKGYISTTKDEKARKTVMDLVANASPYRVFPVGRLDRSTTGVILLTNDGHMTK 257 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQL-HNEKDLTKPAVLEVITPTQVRLTI 178 ++T P + +K Y VTL+ + A+GV+L ++ + +E +V + I Sbjct: 258 KLTHPSFNMKKIYHVTLDRKLDRADLNAIAEGVRLEEGVAEVDSISYIEGKPKNEVGIEI 317 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G V+R+F +G V L R G+T ++ G +R LTE E+ ++ Sbjct: 318 HIGWNRVVRRIFQRLGYEVEALDRVMFAGLT-KKNIKRGHWRILTELEVNNL 368 >UniRef50_A2RP35 Pseudouridine synthase n=172 Tax=Firmicutes RepID=A2RP35_LACLM Length = 328 Score = 268 bits (686), Expect = 1e-70, Method: Composition-based stats. Identities = 97/241 (40%), Positives = 139/241 (57%), Gaps = 12/241 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 MRLDKF+A+ SR+ ++ RVTV GEI R+ F++ VA+DG L Q Sbjct: 87 MRLDKFLAESGLGSRSEVKVLLKKGRVTVAGEIQRDGRFQVDKNSRQVAFDGQILDYQE- 145 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWS 118 Y++LNKPQG V +T D TV+ L E K + GRLD +T GL+++T+DG Sbjct: 146 YYYYLLNKPQGVVSATKDNVFKTVVQLLSEKDFRKDIFPVGRLDKNTEGLLILTNDGALG 205 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQL-HNEKDLTKPAVLEVITP------ 171 H +T P+ H EK Y ++ V D+ +FA+G+ L + EK +E Sbjct: 206 HDLTQPKKHVEKEYFARIDGKVTDEIINKFAEGLTLKNGEKARPGELFVEKTYKGDSQSG 265 Query: 172 --TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 +++R+ I EG++HQVKRMF AV +V+ L R R+G + LD+DLA G YRPLT EEI + Sbjct: 266 WVSEIRVIIHEGKFHQVKRMFEAVEMYVLYLKRIRMGNLALDSDLALGAYRPLTIEEIEN 325 Query: 230 V 230 + Sbjct: 326 L 326 >UniRef50_A4J9G8 Pseudouridine synthase n=47 Tax=Bacteria RepID=A4J9G8_DESRM Length = 249 Score = 268 bits (686), Expect = 1e-70, Method: Composition-based stats. Identities = 85/235 (36%), Positives = 132/235 (56%), Gaps = 7/235 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RLD+ + +R + I+ +V V+GE+ + + P+ + G + + Sbjct: 7 LRLDRLLNHMGLGTRKEIKKLIKAKQVMVNGELAMDPGLHIFPQRDHIEVQGEVIEYRE- 65 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAW-KLHAAGRLDIDTTGLVLMTDDGQWS 118 Y MLNKPQ + +T+D V+ LD GRLD DT GL+L+T++G+ + Sbjct: 66 YIYLMLNKPQDVLSATEDASDKVVIDLLDPTYHSFNPFPVGRLDKDTEGLLLLTNNGKLA 125 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP---TQVR 175 H++ SP+ H KTY ++ V ++ FA+GV+L + T P L++I +++ Sbjct: 126 HQLLSPKKHVPKTYYALVQGLVTEEDVAAFARGVELDDG-YRTLPGQLKIIRSAPQSEIE 184 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 LTI EG+YHQVKRMF AVG V+ L R +G + LD +L PGEYR LT+EEIA + Sbjct: 185 LTIYEGKYHQVKRMFEAVGKRVIYLKRLSMGPLVLDNNLKPGEYRELTDEEIALL 239 >UniRef50_Q6G8H4 Pseudouridine synthase n=61 Tax=Firmicutes RepID=Q6G8H4_STAAS Length = 231 Score = 268 bits (686), Expect = 1e-70, Method: Composition-based stats. Identities = 81/231 (35%), Positives = 127/231 (54%), Gaps = 4/231 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 MR+DKF+A +R + ++ V V+ +++++ + P + G + Sbjct: 1 MRIDKFLANMGVGTRNEVKQLLKKGLVNVNEQVIKSPKTHIEPENDKITVRGELIEYIEN 60 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y MLNKP+ Y+ +T+D TV+ + E + GRLD DT GL+L+T+DG ++H Sbjct: 61 -VYIMLNKPKDYISATEDHHSKTVIDLIPEYQHLNIFTVGRLDKDTEGLLLITNDGDFNH 119 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 + SP H K Y V +P+ +D + F +GV L + K KPA+L I +TI Sbjct: 120 ELMSPNKHVSKKYEVISANPITEDDIQAFKEGVTLSDGK--VKPAILTYIDNQTSHVTIY 177 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EG+YHQVKRMF ++ N V+ L R +I + LD++L GEYR LTE + + Sbjct: 178 EGKYHQVKRMFHSIQNEVLHLRRIKIADLELDSNLDSGEYRLLTENDFDKL 228 >UniRef50_A0JV58 Pseudouridine synthase n=37 Tax=Actinobacteridae RepID=A0JV58_ARTS2 Length = 406 Score = 267 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 71/235 (30%), Positives = 114/235 (48%), Gaps = 5/235 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL K +A SR + I RV VDG++V ++ P+ + DG + Sbjct: 168 IRLQKVMASAGVASRRVCEEMISEGRVEVDGKVVTELGVRVDPKTAVIHVDGLRIQLDEN 227 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y + NKP+G V + +DPD P + F+ +L GRLD+ T GL+L+T+DG+ + Sbjct: 228 MVYMVFNKPKGVVSTMEDPDGRPCISDFVRNTHGERLFHVGRLDVATEGLLLLTNDGELA 287 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRL 176 +R+T P + KTYLV + P Q GV+L + L + + Sbjct: 288 NRLTHPSYEVPKTYLVQVRGPFPQGIGAQLKAGVELEDGMASVDSFKLVDSTPGHVLIEV 347 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 + G+ V+R+F AVG V+ L R ++G I L D G R L ++E+ ++ Sbjct: 348 VLHSGKNRIVRRLFDAVGFPVLRLVRVKVGPIGL-GDQRQGSIRNLGKQEVGHLL 401 >UniRef50_B4U4Q4 Pseudouridine synthase n=15 Tax=Lactobacillales RepID=B4U4Q4_STREM Length = 266 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 79/236 (33%), Positives = 133/236 (56%), Gaps = 10/236 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++K+IA SR A I+ VT++G++V + A + V +G+P+ Sbjct: 27 MRINKYIAHAGVASRRKAEELIKRGLVTLNGQVVTDLATTVKSGDLVEIEGSPI-YNEEK 85 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y++LNKP+G + S D + L V +++ GRLD DT+GL+++T+DG ++ + Sbjct: 86 VYYLLNKPRGVISSVSDDKGRQTVIDLLPQVKERIYPVGRLDWDTSGLLILTNDGDFTDK 145 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI------TPTQV 174 + PR+ +K YL ++ V ++ +GV + +K TKPA +I + V Sbjct: 146 MIHPRNEIDKVYLARVKGVVTKESLRPLTRGVVIDGKK--TKPARYRIIRVEPDKNRSIV 203 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 LTI EGR+HQVK+MF AVG+ V +L R + G + + L PGE R L+++E++ + Sbjct: 204 ELTIHEGRHHQVKKMFEAVGHLVDKLSRTQFGSLDVRG-LKPGEARRLSKKEVSQL 258 >UniRef50_D0MIA1 Pseudouridine synthase n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIA1_RHOM4 Length = 268 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 122/234 (52%), Gaps = 6/234 (2%) Query: 1 MRLDKFIAQQLGV-SRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG 59 +RL++++A+ SR A I +V V+G++ ++ P+ V +G + Q Sbjct: 10 IRLNRYLARAGVCPSRRKADELIASGQVRVNGQVA-QLGMRVGPDDIVEVNGVRVVPQTQ 68 Query: 60 PRYFMLNKPQGYVCSTDDP-DHPTVLYF--LDEPVAWKLHAAGRLDIDTTGLVLMTDDGQ 116 Y ++NKP + + DD TVL L L GRLD +TTG++L+T+DG+ Sbjct: 69 ALYILMNKPHDTITTCDDERGRRTVLDLINLPPEQKNGLFPVGRLDRNTTGVLLLTNDGE 128 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRL 176 ++R+ PR+ EK Y+ PV + AEQ +GVQL + + P ++ L Sbjct: 129 LANRLMHPRYRVEKIYVARTARPVKPEEAEQLRRGVQLEDGPARAVQVAVNPADPHEIAL 188 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I EGR QV+RM A+G+ VV+L R G+T + PG++R LT+ E+ + Sbjct: 189 MIYEGRNRQVRRMLEAIGHEVVQLKRTHYAGLTTKG-VRPGKWRRLTDAEVRRL 241 >UniRef50_C8NZC3 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZC3_ERYRH Length = 246 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 68/236 (28%), Positives = 124/236 (52%), Gaps = 8/236 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL KFIA SR A I +V V+G V K+ E V +G + + Sbjct: 7 IRLQKFIAMSGYCSRRKAEVLINEGKVKVNGIKVTEQGLKVSTEDRVMVNGILINVEEKK 66 Query: 61 RYFMLNKPQGYVCS-TDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y++LNKP+G V S DD D +V+ + + ++ GRLD +TTG +++T+DG +++ Sbjct: 67 VYYILNKPRGIVSSANDDKDRESVVDLVPNDI--RVFPVGRLDRETTGALILTNDGDFAY 124 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDL-TKPAVLEV---ITPTQVR 175 +T P+ K Y V++ ++ + +G+ + + + + ++ TQ Sbjct: 125 YMTHPKFDLSKIYRVSVRGRLSYEVTNSLKEGITIEGVEYKGVEISRVKYDAAKDKTQFS 184 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 +T+ EG+ Q++++FA G V++LHR +IG + +D +L G+YR L E+ ++ Sbjct: 185 ITLHEGKNRQIRKIFAHFGLPVLKLHRYQIGYLDID-ELKIGQYRELKPFEVKKLL 239 >UniRef50_D2B9T7 Pseudouridine synthase n=18 Tax=Actinobacteria (class) RepID=D2B9T7_STRRD Length = 621 Score = 267 bits (683), Expect = 3e-70, Method: Composition-based stats. Identities = 75/233 (32%), Positives = 112/233 (48%), Gaps = 4/233 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 +RL K +AQ SR I RVTVDG++VR ++ P + + DG L Sbjct: 384 VRLQKVLAQAGVASRRACEDMIGDGRVTVDGQVVRRFGARVDPAKQVIHVDGKRLPTMPD 443 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +NKP G V + DPD L +L GRLD +T GL+L+T+DG+ ++ Sbjct: 444 LVYLAINKPIGVVSTMSDPDGRPSLADFVADRTERLFHVGRLDTETEGLILLTNDGELAN 503 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRLT 177 R+T P + +K Y + + D + KG++L + L E V + Sbjct: 504 RLTHPSYGVQKKYWAKVPGRIERDLGRRLKKGIELEDGIAKADSFTLVQEHGQQALVEVV 563 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EGR H V+RM VG+ V++L R G + L L PG R LT +E+ + Sbjct: 564 LHEGRKHIVRRMLEEVGHPVIDLARIEFGPVKL-GRLKPGTVRALTVKEVGEL 615 >UniRef50_A4SY81 Pseudouridine synthase n=5 Tax=Proteobacteria RepID=A4SY81_POLSQ Length = 587 Score = 266 bits (682), Expect = 4e-70, Method: Composition-based stats. Identities = 67/237 (28%), Positives = 111/237 (46%), Gaps = 7/237 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQ--- 57 ++L K +A SR I RV+V+G + ++ P V +G P+ ++ Sbjct: 197 VKLHKVLADVGMGSRRDMEDLIIQGRVSVNGLPA-HIGQRIGPTDQVRINGKPVHRKIQT 255 Query: 58 HGPRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQ 116 PR M +KP G + S DP+ PTV L +P + A GRLD +T GL+L T G+ Sbjct: 256 KPPRVIMYHKPAGEIVSQSDPEGRPTVFDRLPKPRQGRWIAVGRLDFNTEGLLLFTTSGE 315 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQV 174 ++R+ PR+ E+ Y V + ++ + G+ L + + + Sbjct: 316 LANRLMHPRYGVEREYAVRILGDLSQENTALLKSGITLDDGQAKFLRLAMGGGEGANRWY 375 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 + +SEGR +V+RMF AVG+ V L R R G L L G++ + I +++ Sbjct: 376 HVALSEGRNREVRRMFEAVGHTVSRLIRTRYGIFLLPPRLRRGKWEEIEAGGIYNLM 432 >UniRef50_A3ZQL4 Pseudouridine synthase n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZQL4_9PLAN Length = 517 Score = 266 bits (682), Expect = 4e-70, Method: Composition-based stats. Identities = 69/233 (29%), Positives = 114/233 (48%), Gaps = 8/233 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL K +A SR I+ RV VDG+ V K+ PE ++ DG L Sbjct: 18 RLHKVLAFAGIDSRRKCEALIQEGRVEVDGKFVTELGMKVDPEHQEILVDGQRLKFG-KR 76 Query: 61 RYFMLNKPQGYVCSTDDPDHPT-VLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y+MLNKP G + + DP T V+ + + V +L GRLD + GL+++T+DG+ ++ Sbjct: 77 VYYMLNKPPGVLSTNFDPAGRTRVIDMVPQDV--RLFTIGRLDRASEGLIVVTNDGELAN 134 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP--TQVRLT 177 R+ PR+ EKTY V + D +GV L V++ T + + Sbjct: 135 RLAHPRYEIEKTYRVEVAGHPEPDAITFVRRGVHLAEGFVQPVSVVMKRKNKQSTTLEVI 194 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EG+ +++R+ A +G+ V+ L R +G + L ++ G +R L E ++ Sbjct: 195 LDEGKNREIRRLMAKIGHKVLRLKRIAMGPLRL-GEMPEGAFRELKSAETKAL 246 >UniRef50_C8PSZ6 Ribosomal large subunit pseudouridine synthase B n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PSZ6_9SPIO Length = 252 Score = 265 bits (680), Expect = 6e-70, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 116/232 (50%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL ++A SR + I RV+V+G +V K+ V +DG P+ + Sbjct: 15 MRLQVYLAHAGVASRRACEKIIEEGRVSVNGTVVTGMGSKVCAGDTVLFDGKPVHPEARK 74 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP G+VC+ D PT L E + +L+ GRLD+ ++G +L T+DG ++ Sbjct: 75 CYVLLNKPAGFVCTLSDEKGRPTAADLLKEAYSERLYNIGRLDMFSSGAILFTNDGDFAA 134 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 +I P EK Y++ + +F +G+++ + A + ++R+ + Sbjct: 135 KIEHPSAQIEKEYVIETTQDFPPELLTRFERGIRVDGIFYKCRSAA--AVNRRKLRIVLV 192 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 EG+ +++R+ + + L R RIG + L L GE+R LT +E +++ Sbjct: 193 EGKNREIRRVLDSFNCTIKRLVRVRIGNLEL-GTLKAGEFRDLTVQERQALL 243 >UniRef50_C4ZJR2 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=C4ZJR2_THASP Length = 379 Score = 265 bits (680), Expect = 6e-70, Method: Composition-based stats. Identities = 74/235 (31%), Positives = 114/235 (48%), Gaps = 7/235 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQ---QH 58 RL K +AQ SR + R++V+G + K+ P V +G + Q Sbjct: 118 RLQKVLAQAGVASRREIEEWVVAGRISVNGLPA-SLGQKIGPGDRVKVNGKLVPLRFTQR 176 Query: 59 GPRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 PR + +KP+G + S DDP+ PTV L + A GRLD +T+GL+L T+DG Sbjct: 177 SPRVLIYHKPEGEIVSRDDPEGRPTVFERLPILRKGRWLAVGRLDFNTSGLLLFTNDGDL 236 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLE--VITPTQVR 175 ++++ PR+ E+ Y V + + ++ + G+QL + E R Sbjct: 237 ANKLMHPRYELEREYAVRILGELTEEQVKSLTDGIQLEDGPAKFNLLRDEGGEGANHWYR 296 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +TISEGR +V+RMF AVG V L R R G + L A L G + + E E ++ Sbjct: 297 VTISEGRNREVRRMFEAVGLTVSRLMRVRYGSVELPARLKRGMWMEMPEAEACAL 351 >UniRef50_UPI00016C3D27 ribosomal large subunit pseudouridine synthase B n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C3D27 Length = 271 Score = 265 bits (679), Expect = 7e-70, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 118/232 (50%), Gaps = 5/232 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL+K++A SR + I RV V+G V K+ P H +A D P+ + Sbjct: 3 RLNKYLAHAGVGSRRHCDKLISAGRVKVNGVKVTELGLKIDPSAHQIAVDDQPV-RAEKL 61 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y+ +NKP G++C+ DP L V +++ GRLD + GL+LMT+DG + Sbjct: 62 VYWAVNKPVGHLCTNHDPAGRPRAVDLLPHVEQRVYTVGRLDEGSDGLLLMTNDGDLAQG 121 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRLTI 178 +T PR+ K Y V + DD ++ GV L + K K A T VR+ + Sbjct: 122 LTHPRYGVPKMYFVLVAGRPTDDDLQKLMDGVWLSDGKVRAKSAKRIKAQGNGTWVRVVL 181 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +EG+ +++RM A G+ V+ L R IG + LD L G+ R +++EE+ ++ Sbjct: 182 TEGKNREIRRMLAKFGHKVMRLKRVAIGPVKLDK-LPKGKARRISDEELKAL 232 >UniRef50_A3JEU2 Pseudouridine synthase n=2 Tax=Marinobacter RepID=A3JEU2_9ALTE Length = 250 Score = 265 bits (679), Expect = 8e-70, Method: Composition-based stats. Identities = 101/230 (43%), Positives = 139/230 (60%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 M+L + ++ Q +SR A I +V V+ R A + V+ +G L Q H Sbjct: 16 MKLSRIVSNQPDISRKQANWLIATGQVYVNDLSCRTADADVDEFAAVSVNGKTLQQGHCA 75 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y ML+KP GY+ +T+D HPTVL L ++ LH AGRLD TTGL+++T++G WS + Sbjct: 76 HYIMLHKPAGYLSATEDDTHPTVLQLLPPGLSQCLHIAGRLDRATTGLMILTNNGTWSRQ 135 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +T P K Y VT P+ DT ++FA+G+ E+ T PA LE++ PT RLTI E Sbjct: 136 LTLPGMGIAKVYRVTTAYPIGPDTPQRFAEGIWFEYEQLTTAPATLELLEPTLARLTIYE 195 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GRYHQVKRMF AVGN V+ LHRE+IG + L++DLA G +R LT E + Sbjct: 196 GRYHQVKRMFHAVGNRVIALHREQIGHLQLNSDLAEGNFRMLTGSETEGL 245 >UniRef50_C7PP04 Pseudouridine synthase n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PP04_CHIPD Length = 516 Score = 265 bits (679), Expect = 8e-70, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 128/234 (54%), Gaps = 5/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 M L+K+IA SR A ++ +VTV+GE++ AFK+ + +VA + + Q Sbjct: 280 MPLNKYIAHSGLCSRRKAVDFVKEGKVTVNGELITEPAFKVTAKDEVAINNRKINIQKNL 339 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPV--AWKLHAAGRLDIDTTGLVLMTDDGQW 117 Y +LNKP+GY+ +TDDP+ TV+ + + +++ GRLD +T+GL+L+T+DG+ Sbjct: 340 VYILLNKPKGYITTTDDPEGRKTVMELIQDATTEEQRVYPVGRLDRNTSGLLLLTNDGEL 399 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPA-VLEVITPTQVRL 176 + ++ P+H+ +K Y V L P+ E +GV L + +E TQV + Sbjct: 400 AQKLAHPKHNIKKIYHVGLNKPLTKAHFENILQGVTLEDGVANVDALGYVEAGDKTQVGI 459 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I G+ V+R+F + V +L R G+T ++ G++R LTE+EI + Sbjct: 460 EIHSGKNRIVRRIFEHLEYEVEKLDRVTYAGLT-KKNINRGKWRFLTEKEIILL 512 >UniRef50_C4FUC8 Pseudouridine synthase n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FUC8_9FIRM Length = 243 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 84/237 (35%), Positives = 134/237 (56%), Gaps = 9/237 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++K++A SR + + VT++ ++ ++ P D G L Sbjct: 1 MRIEKYLADTGWGSRKDIKQLLAQKIVTINDQVCSKGGTQVTPGSDCVAVGGQLVPYQRY 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAW-KLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y++LNKP+G + +T+D H TV+ +L E L GRLDIDTTGL+L+T++GQ +H Sbjct: 61 HYYLLNKPEGILSATEDRHHQTVIDWLGEGYQHLDLFPVGRLDIDTTGLLLLTNNGQLAH 120 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP------TQ 173 ++ SP+ +KTY T+ V F G+ L + PA L V++ +Q Sbjct: 121 QLLSPKKKVDKTYTATIRGLVDQADIAAFEAGLDL--GDFTSLPAELTVLSQDVDQGTSQ 178 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +++ I EG++HQVKRMF AVG V+ LHR +G + L++DLA G++R LTE+E ++ Sbjct: 179 IQVIIQEGKFHQVKRMFQAVGKEVLSLHRLAMGPLRLESDLAHGQWRSLTEQEAQAL 235 >UniRef50_A0L6G3 Pseudouridine synthase n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L6G3_MAGSM Length = 332 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 72/236 (30%), Positives = 115/236 (48%), Gaps = 8/236 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K++A+Q SR I+ RV+++GE+V K+ VA DG + Q Sbjct: 71 RLQKWLAEQGLCSRREGEVWIQEGRVSINGEVVTELGVKVAKRDRVAVDGQLVTPQRSRD 130 Query: 62 Y-FMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 +L+KP+ +C+ DP T+ ++ + +L GRLDI++ GL+++T DGQ +H Sbjct: 131 TAIILHKPKSIICTRSDPQGRRTIFDLIENHGSSRLITVGRLDINSEGLIILTSDGQLAH 190 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAK-GVQLHNEKDLTKPAVL----EVITPTQV 174 + P + Y V + EQ GV+L + VL E + Sbjct: 191 GLMHPSREVPRVYRVKTHGILLASQLEQIRTVGVRLEDGPTGPLEIVLDRGREQGNNSWY 250 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +T+ EGR +V+R+F G V L R GGI+L +L PG +RP+T +E + Sbjct: 251 TITLREGRNREVRRIFDHFGLQVARLLRVGYGGISL-GNLEPGAWRPVTVDEWNML 305 >UniRef50_Q2S2G3 Pseudouridine synthase n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S2G3_SALRD Length = 249 Score = 264 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 77/234 (32%), Positives = 119/234 (50%), Gaps = 6/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++K+IA SR A + RV +DGE V + V DG + Sbjct: 11 MRINKYIAHAGVCSRRDADDLVEQGRVHIDGERVDQHGTCVREGQTVTVDGEEV-YPLEF 69 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFL--DEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 Y +LNKP+ + +TDDP D TVL + E L GRLD +TTG++L+++DG Sbjct: 70 EYLLLNKPKDTISTTDDPKDRRTVLDAIGVPEDNPSGLFPVGRLDRNTTGVLLVSNDGDL 129 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLT-KPAVLEVITPTQVRL 176 +HR+ PR+ K Y V ++ V +Q +GV+L + + A L+ T + L Sbjct: 130 AHRLMHPRYEIPKIYYVRVQDDVKPHQLDQLKRGVELSDGAAAADQVAYLDPQRKTDIAL 189 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EGR Q++RM A+G+ +V+L R + +T L GE+R L EE+ + Sbjct: 190 ELHEGRNRQIRRMMEALGHTIVQLERAKYATLT-TGRLQRGEWRRLEPEEVREL 242 >UniRef50_C6J9Y4 Pseudouridine synthase n=2 Tax=Clostridiales RepID=C6J9Y4_9FIRM Length = 323 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 71/231 (30%), Positives = 126/231 (54%), Gaps = 7/231 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +R++K++++ SR A R I R+TV+G+ + K+ E ++ D P+ + Sbjct: 14 IRINKYLSEAGICSRREADRMIEEGRITVNGKKAES-GQKVSLEDEICADNIPVHKNEKK 72 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 + NKP+G VCST D TV +LD P+ +++ GRLD ++ GL+L+T++G + Sbjct: 73 VLLLFNKPRGIVCSTKQQFDETTVTDYLDYPL--RVYPVGRLDKESQGLLLLTNEGDLVN 130 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 +I ++ EK Y VT+ PV + + +KGV + + +T+P + R+ ++ Sbjct: 131 KIMRAGNYHEKEYFVTVNKPVDREFVRRMSKGVPVLD--TVTRPCRVVQTGECSFRIILT 188 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +G Q++RM +G V +L R RI +TLD + GEYR +T +E + Sbjct: 189 QGLNRQIRRMCRYLGYEVQKLKRIRIMNLTLDG-IREGEYREITAQEWEEL 238 >UniRef50_B4D966 Pseudouridine synthase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D966_9BACT Length = 237 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 73/230 (31%), Positives = 123/230 (53%), Gaps = 4/230 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL++F+A SR I +V ++G++V + + ++ P V G+ L + Sbjct: 1 MRLNRFLASAGLGSRRGVEELITSGQVRINGQVVTDLSTQVGPTDAVKV-GSRLLRTEQK 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 +LNKP GYVC+ D ++ L +++ GRLD D+ GL+L+T+DG S Sbjct: 60 ITVLLNKPAGYVCTASDERDRKTIFDLLPANWPRVYHVGRLDKDSEGLLLVTNDGDLSLA 119 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +T PR+ EK Y V L+ P E+ KG + + K +E++ PT + LT+++ Sbjct: 120 LTHPRYKIEKEYEVLLDKPFNPQDREKLLKGFHIIGGRA--KAERVEILNPTHLSLTLTQ 177 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G Q++ M +G V L R R+G + + ++ PGE+R LT +EIA++ Sbjct: 178 GIKRQIRLMLYDLGYEVERLARIRLGPLKI-GEMRPGEWRLLTSKEIAAL 226 >UniRef50_Q9I5J6 Ribosomal small subunit pseudouridine synthase A n=25 Tax=Gammaproteobacteria RepID=RSUA_PSEAE Length = 230 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 106/227 (46%), Positives = 134/227 (59%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLD+F+A +SR A I G + VDG++VR+ ++ V D L Sbjct: 1 MRLDRFLANLPELSRRDAQMLIAGGHLRVDGQVVRDGTHEVRVFSRVELDERLLQAGKPA 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 RY+ML+KP G V +T DP HPTVL E + LH GRLD +TTGL+L+T+DGQWS R Sbjct: 61 RYYMLHKPMGCVSATRDPQHPTVLDLFPEDLRDDLHIGGRLDYNTTGLMLLTNDGQWSRR 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +T P +K Y V E+P+ + FA G+ E +T PA LE I P RLT+ E Sbjct: 121 LTLPGSRRDKVYYVETEAPIDQRYVDAFAAGLHFRFEDLVTLPAQLEPIGPRCARLTLHE 180 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 GRYHQVKRMF N V+ LHRER+G I LD L PG +RPL EEI Sbjct: 181 GRYHQVKRMFGHFDNKVLRLHRERMGDICLDPQLPPGAWRPLNAEEI 227 >UniRef50_Q1LLR3 Pseudouridine synthase n=15 Tax=Proteobacteria RepID=Q1LLR3_RALME Length = 631 Score = 264 bits (675), Expect = 2e-69, Method: Composition-based stats. Identities = 66/235 (28%), Positives = 106/235 (45%), Gaps = 7/235 (2%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQ---HG 59 L K +A+ SR I RV+V+G + ++LP V +G + ++ Sbjct: 237 LHKVLAEGGLGSRREMEELILQGRVSVNGLPA-HIGQRILPTDQVRVNGKLIHRKVTTKP 295 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 PR + +KP G + S DP+ PTV L K A GRLD +T GL++ T G + Sbjct: 296 PRVLLYHKPSGEIVSQSDPEGRPTVFDSLPRIKNGKWVAVGRLDFNTEGLLIFTTSGDIA 355 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT--PTQVRL 176 +R PR+ E+ Y V +A+ ++ G+QL + + + Sbjct: 356 NRFMHPRYGVEREYAVRTLGELAEADRQRLLHGIQLDDGEANFLRIADGGGEGVNQWYHV 415 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 ++EGR +V+RMF AVG V L R R G L L G ++ L ++ ++ Sbjct: 416 ALTEGRNREVRRMFEAVGLTVSRLIRTRYGQFLLPRGLKRGRWQELDPTDVRGLM 470 >UniRef50_Q2LSY4 Pseudouridine synthase n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LSY4_SYNAS Length = 251 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 120/233 (51%), Gaps = 4/233 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL K +A+ SR A IR RV+V+ EIVR K E ++ DG + + Sbjct: 4 RLQKILARSGVASRRKAEEMIREGRVSVNSEIVRELGSKADIERDEIRVDGKLICAEETK 63 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y MLNKP+GYV + DP ++ L + +L GRLD D+ GL+L+T+DG ++ R Sbjct: 64 VYVMLNKPRGYVTALSDPQKRPLVIHLLPELGVRLFPVGRLDYDSEGLLLLTNDGGFAQR 123 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP--TQVRLTI 178 + PR+ KTY V + + + KG++L + K LE I P + + + I Sbjct: 124 VQHPRYRISKTYRVKISGRLNAAEFNRLQKGLELEDGKFAPDEVALEEINPKSSWLTMKI 183 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 SEGR ++R F +G+ V+ L R + + L +L G+YR L E+ ++ Sbjct: 184 SEGRNRVIRRAFEQLGHEVLRLIRTAVADLHL-GNLREGDYRLLKGWEVQQLL 235 >UniRef50_Q38VQ0 Pseudouridine synthase n=6 Tax=Lactobacillus RepID=Q38VQ0_LACSS Length = 239 Score = 263 bits (674), Expect = 3e-69, Method: Composition-based stats. Identities = 81/235 (34%), Positives = 125/235 (53%), Gaps = 7/235 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR+D+F++ +R ++ RV V ++++ A +++ PE V D P+ Q Sbjct: 1 MRIDRFLSHMNVGTRKTLKPLLKAGRVRVADKVIKEAKYQVTPETVVYVDDEPIRYQTNF 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFL-DEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y++LNKP G + +T DP TV+ L GRLD DTTGL+L+T+DG +H Sbjct: 61 -YWLLNKPAGVISATTDPQ-KTVMDLFAPADYREDLFPVGRLDKDTTGLLLITNDGDLAH 118 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT----PTQVR 175 + SP+ H KTY + V QFA G++L + + + + Sbjct: 119 DLLSPKKHVAKTYRAKIAGVVTAADQAQFAAGLKLRDFDAQPAQLTILRTDTARQESLIE 178 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + I EG++HQVKRMF AVG V+ L R ++G ++L ADL G+YR LT EI ++ Sbjct: 179 VEIHEGKFHQVKRMFHAVGKEVLTLERIKMGPLSLPADLKRGQYRALTTTEIDAL 233 >UniRef50_A5KLG0 Pseudouridine synthase n=8 Tax=Bacteria RepID=A5KLG0_9FIRM Length = 261 Score = 263 bits (673), Expect = 4e-69, Method: Composition-based stats. Identities = 98/260 (37%), Positives = 143/260 (55%), Gaps = 32/260 (12%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLL-PEHDVAYDGNPLAQQHG 59 +RLDK++ + +R+ +EI V+V+GEI + A K+ + ++ + G + G Sbjct: 3 LRLDKYLTEMGCGTRSQVKKEILKGSVSVNGEIAKKAERKVDTEKDEIIFKGEKI-FYAG 61 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 YFMLNKP G V +T+D TV+ + E L AGRLD DT GL+L+T+DGQ +H Sbjct: 62 YEYFMLNKPAGVVSATEDKKERTVIDLIKESKRKDLFPAGRLDKDTEGLLLITNDGQLAH 121 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT--------- 170 R+ SP+ H +K Y ++ V ++ F KGV + +EK T PA LE+++ Sbjct: 122 RLLSPKKHVDKIYYAKIKGIVTEEDVRLFEKGVHIGDEK-PTMPAALEILSVQKERRKEK 180 Query: 171 --------------------PTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITL 210 +++ LTI EGR+HQVKRMF AVG VV L R + G +TL Sbjct: 181 IKEQKILPETKNETDEKEDGYSEIYLTIKEGRFHQVKRMFRAVGKEVVYLKRIQFGTLTL 240 Query: 211 DADLAPGEYRPLTEEEIASV 230 D L PG+YR LTEEE+ + Sbjct: 241 DPSLKPGQYRKLTEEEVEQL 260 >UniRef50_A5V220 Pseudouridine synthase n=5 Tax=Bacteria RepID=A5V220_ROSS1 Length = 624 Score = 262 bits (672), Expect = 5e-69, Method: Composition-based stats. Identities = 85/235 (36%), Positives = 126/235 (53%), Gaps = 11/235 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL K +A SR I RV V+G++VR ++ PE ++ DG P+ + H Sbjct: 5 RLQKVLASAGIASRRDCEEYIAAGRVMVNGKVVRIPGTRVDPEHDEILVDGRPIGKIHHR 64 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y ML+KP G V +TDDP PTV+ ++ + +L GRLD D+ GL+L+TDDG+ + Sbjct: 65 TYVMLHKPAGVVSTTDDPQGRPTVIDLVN--LEQRLFPVGRLDYDSEGLLLLTDDGELTQ 122 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT----QVR 175 ++T P + EK Y V L + + GV+L K T PA +E+I T VR Sbjct: 123 KLTHPSYQVEKEYRVLLNEAPSPAALRAWRTGVELDGVK--TAPAWVELIERTPDGAWVR 180 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + + EGR Q++ + +G V L R R G +TL DL G +R LT+EE+ + Sbjct: 181 VILHEGRKRQIREVARVLGYEVRRLIRVREGPLTL-GDLPSGTWRFLTDEEVDML 234 >UniRef50_D0U645 Pseudouridine synthase n=1 Tax=uncultured actinobacterium RepID=D0U645_9ACTN Length = 237 Score = 262 bits (672), Expect = 5e-69, Method: Composition-based stats. Identities = 76/231 (32%), Positives = 117/231 (50%), Gaps = 4/231 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 MRL+K IA SR A I RV V+G IVR K PE V DG + + Sbjct: 4 MRLNKIIADAGITSRRGADELIEDGRVAVNGIIVREMGSKFDPEMDKVMVDGETITRTLT 63 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y L+KP+G + + DP+ L + +L GRLD D+ GL+L+T+DG + Sbjct: 64 KSYLALHKPKGVLSTMFDPEGRPSLDDFIDLRKERLFHVGRLDKDSEGLILLTNDGDLTF 123 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 R T P EKTY++ + + + KGV+L + + ++P + ++I Sbjct: 124 RATHPSFGLEKTYIIEFDGILPTGVDKVLLKGVELEDGMGRVL--TFKQLSPKWIEVSIH 181 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EGRYH ++R+ AVG +V+ L R + G I+L D G +R L + E+ ++ Sbjct: 182 EGRYHIIRRLMEAVGVNVLRLIRTKFGPISL-GDTPEGRWRDLNDGELMNL 231 >UniRef50_A8SLU4 Pseudouridine synthase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SLU4_9FIRM Length = 230 Score = 262 bits (672), Expect = 5e-69, Method: Composition-based stats. Identities = 66/231 (28%), Positives = 116/231 (50%), Gaps = 5/231 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++KFIA SR A + +V V+G++ + +V +G + + Sbjct: 1 MRINKFIANSGYCSRRNADLLLEQGKVFVNGKLATK-GIDISENDEVLVEGKKIKLEEAK 59 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 +Y++LNKP GY + VL +D +++ GRLD D+ GL+L+T+DG + Sbjct: 60 KYYLLNKPIGYSSTAKAQFQEKIVLDLID--SKERIYPVGRLDKDSFGLLLLTNDGDLAF 117 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 R+T P H+ EK Y+V ++ + + ++ + G+ L + + V++ + Sbjct: 118 RLTHPSHNVEKEYIVKVDKTLKESDLKKLSSGIMLEGKITRKARFEMLDFKSNIVKVFLK 177 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EGR Q+++MF + +V+ L R G I L L G YR L++EEI + Sbjct: 178 EGRNRQIRKMFKTLDYNVISLERIAFGKIKL-GKLKVGNYRELSKEEIEYL 227 >UniRef50_B3QY10 Pseudouridine synthase n=10 Tax=Chlorobiaceae RepID=B3QY10_CHLT3 Length = 297 Score = 262 bits (671), Expect = 6e-69, Method: Composition-based stats. Identities = 70/233 (30%), Positives = 120/233 (51%), Gaps = 6/233 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 +RL+KFIA SR A I V V+G++V +K+ +V +G L + Sbjct: 43 IRLNKFIALCGEASRRKADEMIEQGEVMVNGKVVMELGYKVDRRADEVVVNGKKLHENTQ 102 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y +LNKP+ V ++ D TV+ + + ++ GRLD DTTG++L+T+DG + Sbjct: 103 KIYILLNKPKDVVTTSSDEKSRKTVVELV--GLKDRVFPVGRLDRDTTGVLLLTNDGDLT 160 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP-TQVRLT 177 +R+T P +K Y+ TL+ + + KG +L + + P ++ + + Sbjct: 161 YRLTHPTFGVQKQYVATLDKKITSVDLQNIKKGFRLKDTGEKVSPCNARILDDGYTIWVA 220 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I EG+ HQ+ RMF + G +V +L R GG+ + GE+R LT+ E++ + Sbjct: 221 IHEGKNHQIHRMFWSFGYNVKKLVRVAYGGLE-VGTMRRGEWRFLTQLEVSKL 272 >UniRef50_B0S1L0 Pseudouridine synthase n=2 Tax=Finegoldia magna RepID=B0S1L0_FINM2 Length = 242 Score = 262 bits (671), Expect = 6e-69, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 123/235 (52%), Gaps = 9/235 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++KFIAQ SR A I+ ++V V+G I+ + ++++ V +G + + Sbjct: 1 MRINKFIAQSGYCSRRNADELIKNSKVYVNGTILLDLSYQVNDTDIVEVEGKKINLKEDK 60 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +NKP GY + D V+ + +++ GRLD D+ GL+++T+DG++++ Sbjct: 61 IYIAINKPIGYASTVKDKFADKKVVDLIKSDT--RVYPVGRLDKDSHGLLILTNDGEFTY 118 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TPTQVR 175 +T P+ +K Y V ++ +Q G+ L K + +E I T+ R Sbjct: 119 ELTHPKFEHKKIYEVLVKGKPNKTEIKQLKDGILLDG--YKLKKSKIEFIENVKNDTKYR 176 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +TI EGR Q++RMF + + V++L R +IG ++ L GEY+ L +++ + Sbjct: 177 VTIFEGRNRQIRRMFDFINHPVLDLKRVQIGNYKMENSLKSGEYKLLKSKDLDLI 231 >UniRef50_D2R7V9 Pseudouridine synthase n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R7V9_9PLAN Length = 811 Score = 262 bits (671), Expect = 6e-69, Method: Composition-based stats. Identities = 66/234 (28%), Positives = 121/234 (51%), Gaps = 8/234 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHGP 60 RL K +A SR I RV VDG++V ++ P + + DG L + Sbjct: 35 RLQKVLAAAGIGSRRDCEELITEGRVDVDGKVVTELGTRVDPVKQTIRVDGEALRKPQR- 93 Query: 61 RYFMLNKPQGYVCSTDDPDHPT-VLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 YF++NKP+G V + D T V+ + ++ A GRLD + GL+++T+DG++++ Sbjct: 94 LYFVVNKPEGVVTTNYDQAGRTRVIDLVP--TDERVFAVGRLDRASEGLIIVTNDGEFAN 151 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEV--ITPTQVRLT 177 R+T PR+ KTYLV + + + +G+ L + ++ T + + Sbjct: 152 RVTHPRYGVTKTYLVRVAGEASTAELAKLRRGIHLSDGFCKVDAIQVKRRHKQSTDMVIQ 211 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 +SEG+ +++R+ A +G+ V++L R +G + L +L G +R L ++EI ++ Sbjct: 212 LSEGKNREIRRILARIGHKVLKLKRLAVGSLKL-GELPLGAWRWLDKQEIERLL 264 >UniRef50_UPI0001BCEF2E pseudouridine synthase n=1 Tax=Selenomonas noxia ATCC 43541 RepID=UPI0001BCEF2E Length = 296 Score = 262 bits (671), Expect = 6e-69, Method: Composition-based stats. Identities = 78/234 (33%), Positives = 112/234 (47%), Gaps = 8/234 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHGP 60 RL K ++ SR A IR RV VDG V K P H + D P+ Sbjct: 4 RLQKILSNAGVASRRAAEDLIRAGRVAVDGVAVTELGRKFDPANHTITVDSKPIHSDEKR 63 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +LNKP+GY+ + D + L +L+ GRLD DT G++L+T+DG + Sbjct: 64 FYILLNKPRGYLSTARDDRGRKTVLDLLPDFPARLYPVGRLDADTEGVLLITNDGAITQG 123 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP----TQVRL 176 + PR +K Y + PV + + +G+ L + +T A L ++ T V Sbjct: 124 LLHPRFEIDKVYHAEVAGPVTEGGLTRLRRGILLEDG--MTASAKLRILRADKGYTVVET 181 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I EGR QV+RMFAA+G V L R R +TL L+ G +R LT +EI + Sbjct: 182 IIHEGRNRQVRRMFAAIGCRVCALRRVRFAMLTLRG-LSCGSFRHLTRDEIHEL 234 >UniRef50_Q6SI36 Pseudouridine synthase n=1 Tax=uncultured marine bacterium 105 RepID=Q6SI36_9BACT Length = 255 Score = 262 bits (671), Expect = 7e-69, Method: Composition-based stats. Identities = 73/238 (30%), Positives = 119/238 (50%), Gaps = 8/238 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL K +A SR A R I RVTV+G V K P+ D+ DG + Sbjct: 6 VRLQKVLASAGISSRRAAERLIEVGRVTVNGRSVTKLGAKADPDLDDIRVDGRKVKTGRP 65 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y ++ KP+GYV + DP+ + L V ++ GRLD D+ GLV++T+DG + Sbjct: 66 RIYLLVCKPRGYVTTRFDPEGRRTILNLISNVREYVYPVGRLDYDSEGLVILTNDGTLAA 125 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL------EVITPTQ 173 R+T PR+ E+ Y V + + + GV ++ + + + Sbjct: 126 RLTHPRYGVERVYEVRVRGVPSQAAIDSLRHGVLINGRRTASSSVKFLRRLKAKSSENAL 185 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 +R+ I EGR QV++M A+G+ V+ L R +IG + D+ L G++R LT E+A+++ Sbjct: 186 LRVAIREGRNRQVRKMCEAIGHPVIRLRRTQIGPLR-DSSLKVGKHRLLTTSEVAALM 242 >UniRef50_C2KV26 Pseudouridylate synthase n=1 Tax=Oribacterium sinus F0268 RepID=C2KV26_9FIRM Length = 239 Score = 262 bits (671), Expect = 7e-69, Method: Composition-based stats. Identities = 83/237 (35%), Positives = 140/237 (59%), Gaps = 9/237 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEH-DVAYDGNPLAQQHG 59 MRLDK+++ SR++ REIR V ++GEIV++ + ++ P + ++ Y P+ Sbjct: 1 MRLDKYLSDMGVESRSVLKREIRKGLVKINGEIVKDPSMEVQPGNSEIVYKDEPIH-YEE 59 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y+M+NKP G + ST+D TVL + L GRLD D+ GL+L+ +DG +H Sbjct: 60 FSYYMMNKPVGVLSSTEDRKQKTVLDLFSDKHRKDLFPVGRLDKDSEGLLLIMNDGALAH 119 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT----QVR 175 ++ SP+ H EK YLV + ++++ ++ +G+Q ++ + PA ++ T +V Sbjct: 120 KLLSPKMHIEKKYLVEIPGKISEEELDRLRQGIQ-YDTDLIAMPAKARCLSSTEEGSRVE 178 Query: 176 LTISEGRYHQVKRMFAAV--GNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + I EG++HQ+K+MF A+ V +L R +G + LD LAPGEYR L+EEE+ ++ Sbjct: 179 VIIMEGKFHQIKKMFLALSTDYVVTKLQRLSMGPLHLDPALAPGEYRKLSEEEVQAL 235 >UniRef50_Q21JF0 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q21JF0_SACD2 Length = 242 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 112/242 (46%), Positives = 146/242 (60%), Gaps = 13/242 (5%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKFIA SR R I+ V VD +I + +F + + V DG + + P Sbjct: 1 MRLDKFIANNSSYSRTEVKRLIKNKTVCVDKKITTDPSFTVTNLNTVRIDGE-IIEAIKP 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFL------------DEPVAWKLHAAGRLDIDTTGL 108 Y MLNKP GYVC+ D H V+ + + A L AGRLD+DTTGL Sbjct: 60 LYIMLNKPTGYVCANKDNIHSPVVDLITEQHARQSDQTPPKYRAQSLQIAGRLDVDTTGL 119 Query: 109 VLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEV 168 VL+TD+G+W+HR+TSP C K Y V LE P+ D + ++GV LH EK T PA +E+ Sbjct: 120 VLLTDNGEWNHRVTSPNKACFKRYRVKLEKPLDDAAIKLLSEGVMLHGEKAATLPATVEL 179 Query: 169 ITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 I+ T+V L+I EGR+HQVKRMF VG VV+LHRE IG I LD +L PG++R LT EEI Sbjct: 180 ISNTEVLLSIQEGRFHQVKRMFVKVGTCVVKLHREAIGAIELDTNLKPGQWRHLTNEEIE 239 Query: 229 SV 230 ++ Sbjct: 240 AI 241 >UniRef50_B9KY92 Pseudouridine synthase n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9KY92_THERP Length = 282 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 84/233 (36%), Positives = 122/233 (52%), Gaps = 8/233 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL + +A SR A I RVTVDG +VR K+ PE ++ DG PL Sbjct: 9 RLQRVLAAHGVASRRKAEELILAGRVTVDGVVVRELGRKVDPERQEICVDGKPLHS-EPR 67 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 RY +L+KP GY+ +T D TVL + V ++ GRLD D++GL+L+T+DG + Sbjct: 68 RYIVLHKPVGYITTTADEYGRKTVLDLV--QVPERVVPVGRLDRDSSGLLLLTNDGDLIY 125 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP--TQVRLT 177 RIT PR+ EK Y V ++ + E +GV + + + P T R+ Sbjct: 126 RITHPRYELEKEYEVLVDGFPPPEVEEALRRGVPVDGRPVRIRRLEAIRVEPQGTVYRVV 185 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I EGR ++R+F VG V+ L R R+G + L DL PG +R LT E+A++ Sbjct: 186 IHEGRNRIIRRVFERVGYPVLRLQRVRVGPLRL-GDLPPGRWRDLTASEVAAL 237 >UniRef50_A6DMJ6 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DMJ6_9BACT Length = 239 Score = 261 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 104/230 (45%), Positives = 139/230 (60%), Gaps = 3/230 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLL-PEHDVAYDGNPLAQQHG 59 +RLDK IA+ ++R+ A R ++ V V+ + + V +DG L + Sbjct: 8 IRLDKMIAKCTDLTRSEATRALKNGFVKVNDIPQKVGKSTIDLANDVVTFDGEVLEYRE- 66 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWS 118 YFMLNKP+GYVC+ D TVL L +A + + GRLDIDTTGLV++TDDG W+ Sbjct: 67 TIYFMLNKPKGYVCAAKDERLKTVLDLLPPALASREPFSCGRLDIDTTGLVILTDDGTWA 126 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 H ITSP+ CEK+YLV S ++D+ +GV L + +T PA +E I RL I Sbjct: 127 HGITSPKRKCEKSYLVGSVSELSDEDMRNLEQGVYLDGDDKITAPAKIEKIDEKTYRLKI 186 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 +EGRYHQVKRMF AV N V LHRE+IGG++LD DL G +R LT EE+ Sbjct: 187 TEGRYHQVKRMFEAVDNMVKSLHREQIGGLSLDDDLDEGNWRDLTAEEVK 236 >UniRef50_A6C4P7 Pseudouridine synthase n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C4P7_9PLAN Length = 352 Score = 261 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 71/233 (30%), Positives = 122/233 (52%), Gaps = 5/233 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL KF+A SR I RV+VDG+++ K+ PE + DG + Q Sbjct: 23 IRLQKFLAATGLGSRRHCEEYIETGRVSVDGDVITELGAKIDPETQFIEVDGERVRLQ-P 81 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 RY++LNKP G++C+ +DP + L +L GRLD ++ GL+L+T+DG+ + Sbjct: 82 RRYYLLNKPSGFLCTNNDPAGRRRVVDLFPNDGQRLFTVGRLDENSEGLILVTNDGELAQ 141 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQL-HNEKDLTKPAVLEVITPT-QVRLT 177 R+ PR+ +TY V + + ++ KGV+ ++ L+ + + LT Sbjct: 142 RLAHPRYRVARTYHVQVVGNPPREKLDELRKGVRFKEGVFRVSGLKYLKKQGKSAFLELT 201 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EG+ +++RM A +G+ V++L R R G + L L GE R L++ E+ + Sbjct: 202 LHEGQNREIRRMMARIGHKVIQLVRIRFGPLNL-GKLKTGESRRLSDTELKKL 253 >UniRef50_B3DRY9 Pseudouridine synthase n=7 Tax=Bifidobacterium RepID=B3DRY9_BIFLD Length = 256 Score = 261 bits (668), Expect = 1e-68, Method: Composition-based stats. Identities = 75/234 (32%), Positives = 114/234 (48%), Gaps = 5/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL K +AQ SR I RV VDGE+V ++ P V DG+ + Sbjct: 18 IRLQKLLAQAGFGSRRKCEDMITEGRVEVDGELVTELGTRVDPHKQQVRVDGSRVRVNPN 77 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 LNKP+ + + DDP L + ++ GRLD D+ GL+LMT+DG+ S Sbjct: 78 HVTLALNKPRKVLSAMDDPKGRYTLRDIVGDKYERIFHMGRLDYDSEGLILMTNDGELSQ 137 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQF-AKGVQLHNEKDLTKPAVL--EVITPTQVRL 176 + P++ EKTY+ TLE ++ + GVQL + + T V++ Sbjct: 138 HVMHPKYEVEKTYVATLEGKISGTVCRRLVTTGVQLDDGWIKLDHCAIIDSSRDHTMVKV 197 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + G+ V+R+F ++G V L R +IG I L DL PG YR L++ E+ S+ Sbjct: 198 VLHSGKNRIVRRIFGSIGFPVKRLVRTQIGPIKL-GDLKPGSYRVLSQTEVRSL 250 >UniRef50_C1XV14 Pseudouridine synthase n=2 Tax=Meiothermus RepID=C1XV14_9DEIN Length = 369 Score = 260 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 107/232 (46%), Gaps = 9/232 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL +F+A+ SR A IR RVT++ +I + V DG + Sbjct: 1 MRLQQFLARAGVASRRKAEDLIREGRVTINDQIA-GIGSSVSESDVVCLDGERVRLPEKK 59 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 L+KP G + DP TV + + LH GRLD D+ GL+L+T+DG + Sbjct: 60 VVIALHKPVGVTTTKSDPHAERTVYQLVPD--VPGLHPVGRLDKDSEGLLLLTNDGDLTL 117 Query: 120 RITSPRHHCEKTYLVTL-ESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 ++T PR+ K Y V++ + +GV L + A R+ + Sbjct: 118 KLTHPRYGVRKVYRAWCKHGRVSEADCRRLVEGVALDDGLAQALEAEPTQEG---ARIVM 174 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +EG+ +V+RM +G V L R ++G I L L PGE+R LT EEI + Sbjct: 175 AEGKKREVRRMLGRLGYPVTRLVRLQVGPIKL-GKLNPGEWRYLTPEEIGLL 225 >UniRef50_Q47QM5 Pseudouridine synthase n=3 Tax=Actinomycetales RepID=Q47QM5_THEFY Length = 375 Score = 260 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 82/236 (34%), Positives = 125/236 (52%), Gaps = 7/236 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEH-DVAYDGNPLAQQHG 59 +RL K +AQ SR I RV+VDG+IVR ++ PE ++ DG + Sbjct: 135 IRLQKALAQAGVASRRACEELIAAGRVSVDGQIVRRFGARVDPEKSEIRVDGMRVVTSQN 194 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDE---PVAWKLHAAGRLDIDTTGLVLMTDDGQ 116 RY+ LNKP+G V + DP+ + P+ +L GRLD DT GL+L+T+DG+ Sbjct: 195 LRYYALNKPRGVVSTMFDPEGRPTIGDYAAQIGPIEERLFHVGRLDTDTEGLILLTNDGE 254 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQV 174 ++R+T PR+ KTYL + PV D Q KGV+L + + + V Sbjct: 255 LANRLTHPRYKVTKTYLAKVPGPVPRDVIRQIRKGVELDDGFVKVDSFRVIDNIEPKALV 314 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + + EGR H V+R+ AVG+ V +L R +IG + L+ +L G R LT +E++ + Sbjct: 315 EIRLHEGRKHIVRRLMKAVGHPVSDLARTQIGPVGLN-NLKSGTIRALTSQEVSEL 369 >UniRef50_C8NNL7 Pseudouridine synthase n=8 Tax=Corynebacterium RepID=C8NNL7_COREF Length = 329 Score = 260 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 74/236 (31%), Positives = 110/236 (46%), Gaps = 7/236 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL K +AQ SR A I RV V+G IV ++ P + DG + Sbjct: 89 IRLQKVLAQAGVASRRHAEILIDNGRVEVNGRIVTTQGTRVNPNSDVIRVDGVRININED 148 Query: 60 PRYFMLNKPQGYVCSTDDP-DHPTVLYFLDE--PVAWKLHAAGRLDIDTTGLVLMTDDGQ 116 YF+LNKP+G + D P V + E +L GRLD DT GL+L+T+DG+ Sbjct: 149 LEYFVLNKPRGMHSTMSDDLGRPCVGDLVSEKTASGQRLFHVGRLDADTEGLLLLTNDGE 208 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQV 174 ++R+ P++ KTYL T+ + KG++L + + + + Sbjct: 209 LANRLMHPKYEVRKTYLATVRGEAGPNLVTTLRKGIELEDGPAKADYVQIIDTFQGKSLI 268 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 RL I EGR H V+RM G V L R ++ + L + PG R L E+AS+ Sbjct: 269 RLEIHEGRKHIVRRMLDEAGFPVERLVRTKLHTVQL-GEQKPGSLRALNASELASL 323 >UniRef50_B1XJP9 Pseudouridine synthase n=3 Tax=Chroococcales RepID=B1XJP9_SYNP2 Length = 259 Score = 260 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 83/237 (35%), Positives = 129/237 (54%), Gaps = 10/237 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHGP 60 R+ K +A+ SR A + I RVT++G+ V + P + DG PL P Sbjct: 4 RVQKILARWGIASRRGAEKLILAGRVTLNGKPV-QLGDQADPEGDRLCVDGKPLKATERP 62 Query: 61 R--YFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWK--LHAAGRLDIDTTGLVLMTDDG 115 R Y++++KP+G V + DP TVL L P+ +H GRLD +TG +L+T+DG Sbjct: 63 RHYYYLIHKPKGVVSTCADPKGRSTVLDLLPPPLRQGKGIHPIGRLDAQSTGALLLTNDG 122 Query: 116 QWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI--TPTQ 173 ++ +T PR+H KTY V L+ V + +Q+ +GV L + + L L+ I T Sbjct: 123 NFTLALTHPRYHIPKTYRVWLKGKVPEHVLDQWRQGVMLGDRRTLPTQIHLKTITQDKTC 182 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + + ++EGR Q++R+ +G VV+LHR IG + L DL G+ RPLT+ EI + Sbjct: 183 IDIMLTEGRNRQIRRVAEQLGFPVVKLHRLAIGNLHL-GDLQRGQARPLTKAEIKQL 238 >UniRef50_B1C6T1 Pseudouridine synthase n=2 Tax=Clostridiales RepID=B1C6T1_9FIRM Length = 238 Score = 260 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 126/234 (53%), Gaps = 4/234 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLL-PEHDVAYDGNPLAQQHG 59 MR++K++A SR I +VTV+GE+VR + + V G ++ Sbjct: 5 MRINKYLASCGVASRRKCEEIISRGKVTVNGEVVRELGTIINVEKDLVKVYGKEVSLDTK 64 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y+MLNKPQG + ++ + L +L GRLD DTTGL+++T+DG +++ Sbjct: 65 KVYYMLNKPQGVISASKSKYGEETVVDLLGKKEHRLFPVGRLDKDTTGLIILTNDGDFAY 124 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLE--VITPTQVRLT 177 ++T P++ EKTY ++ V + ++ +GV + +K L + + V +T Sbjct: 125 KLTHPKYEKEKTYEALVKGKVDSKSLDKLKQGVVIDGKKTSRAKVRLVKMIGVNSLVEIT 184 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 + EGR QVK+M VG+ V++L+R G++L DL GEYR LT+ E++ ++ Sbjct: 185 LIEGRKRQVKKMCEKVGHKVIKLNRTMENGLSL-GDLEIGEYRKLTKNEVSKLL 237 >UniRef50_A4QE19 Pseudouridine synthase n=13 Tax=Corynebacterineae RepID=A4QE19_CORGB Length = 320 Score = 260 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 73/236 (30%), Positives = 110/236 (46%), Gaps = 7/236 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL K +AQ SR A I RV V+ IV ++ P + DG + Sbjct: 80 VRLQKVLAQAGVASRRHAEILIDQGRVEVNDRIVTTQGVRVNPNNDVIRVDGVRIHINED 139 Query: 60 PRYFMLNKPQGYVCSTDDP-DHPTVLYFLDE--PVAWKLHAAGRLDIDTTGLVLMTDDGQ 116 YF+LNKP+G + D P V + E +L GRLD DT GL+L+T+DG+ Sbjct: 140 LEYFVLNKPRGMHSTMSDELGRPCVGDLVSEKTASGQRLFHVGRLDADTEGLLLLTNDGE 199 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQV 174 ++R+ P++ KTYL T+ + GV+L + A + + + Sbjct: 200 LANRLMHPKYEVSKTYLATVRGEATNKLVSALRDGVELEDGPAKADFAQIIDVFQGKSLL 259 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 R+ I EGR H V+R+F +G V L R ++ + L D PG R L E+ S+ Sbjct: 260 RIEIHEGRKHIVRRLFDELGFPVERLVRTKLHTVQL-GDQKPGSLRALNSSELTSL 314 >UniRef50_A8S8D3 Pseudouridine synthase n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8S8D3_9FIRM Length = 233 Score = 260 bits (666), Expect = 2e-68, Method: Composition-based stats. Identities = 96/233 (41%), Positives = 138/233 (59%), Gaps = 5/233 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDK++A+ +R+ A + RV V+G + + +L VA DG L Sbjct: 1 MRLDKYLAETAQCTRSEAKTMLAKGRVQVNGAVCKKGDTQLKDTDTVAVDG-ALLTYQKF 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWSH 119 Y MLNKP+G V ++ D TV+ + + + L AGRLD +TG VL+TDDG ++H Sbjct: 60 VYLMLNKPEGVVSASTDKRDTTVVDLVGDAYPRRELFPAGRLDKTSTGFVLLTDDGGFAH 119 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT--QVRLT 177 I SPRHH KTY VT+++P+ + FA GV L + L+ PA + ++P VR+ Sbjct: 120 DILSPRHHVSKTYTVTIDTPLTQEMCTGFAAGVTLADGTALS-PAEVTALSPDGLTVRVV 178 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + +G YHQ+KRMF G V LHRE IGG+ LDA LAPG++R L++EE+A + Sbjct: 179 LRQGVYHQIKRMFGVYGAGVNALHREAIGGLALDAQLAPGQWRELSDEEVAKI 231 >UniRef50_C9LMF3 Ribosomal small subunit pseudouridine synthase A n=1 Tax=Dialister invisus DSM 15470 RepID=C9LMF3_9FIRM Length = 277 Score = 260 bits (666), Expect = 2e-68, Method: Composition-based stats. Identities = 87/256 (33%), Positives = 132/256 (51%), Gaps = 28/256 (10%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF++ +R R+IR V V+GE + + F + ++ + G P+ Sbjct: 18 MRLDKFLSDMNMGTRTELKRDIRKGAVQVNGEKITDPGFMVNENDEIIFAGEPV-PYFRY 76 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y+MLNKP G + +T+D TVL F E L GRLD DT GL+L+T+DG + HR Sbjct: 77 EYYMLNKPAGVITATEDRYQKTVLDFFGERRRKDLSPVGRLDKDTVGLLLVTNDGGFHHR 136 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP--------- 171 + SP+ H +K Y ++ V + E+F KG+ + +E PA L + Sbjct: 137 LLSPKKHIDKEYYARIDGRVDEADREKFEKGIYV-DEIFTALPAKLMIDGYRENALESDF 195 Query: 172 -----------------TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADL 214 +++R+ + EG++HQ+KRMF A+G V+ L R RIG + LD L Sbjct: 196 MDLANSRAPKSALENGVSEIRVVVQEGKFHQIKRMFHALGKEVIYLKRIRIGSVVLDPTL 255 Query: 215 APGEYRPLTEEEIASV 230 G YR LT E+A++ Sbjct: 256 EEGTYRRLTAGEVAAL 271 >UniRef50_B6IXC3 Pseudouridine synthase n=2 Tax=Alphaproteobacteria RepID=B6IXC3_RHOCS Length = 551 Score = 260 bits (666), Expect = 2e-68, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 101/223 (45%), Gaps = 3/223 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +++ SR A R I RV+V+G ++ A + P + DG P+ + R Sbjct: 32 RISKRLSRAGLCSRRDAERWIAEGRVSVNGRVLDTPAVTVRPGDRIVVDGQPVPEPEPTR 91 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 + +KP G V + D ++ P ++ + GRLD+ + GL+L+T+DG + + Sbjct: 92 VWRYHKPDGLVTTARDEKGRPTVFDNLPPELPRVVSVGRLDLTSEGLLLLTNDGALARHL 151 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEV--ITPTQVRLTIS 179 P + Y V + + + A+G+ + + V++ T + +++ Sbjct: 152 ELPVTGWLRRYRVRVHGAPDEAQIAKLAQGIIIEGIEYGPIETVVDRSVGANTWLTVSLR 211 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPL 222 EGR +V+R+ +G V L R G L L PG+ + Sbjct: 212 EGRNREVRRVMEHLGLPVSRLIRVAYGPFQL-GKLEPGQVEEV 253 >UniRef50_A9ITY6 Pseudouridine synthase n=6 Tax=Betaproteobacteria RepID=A9ITY6_BORPD Length = 588 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 68/235 (28%), Positives = 110/235 (46%), Gaps = 7/235 (2%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQ---HG 59 L K +A SR I RV+V+GE + ++ P V +G P+A+ Sbjct: 125 LHKVLADAGIGSRREMEELITAGRVSVNGEPA-HIGQRVAPSDQVRVNGKPVARPNTKKP 183 Query: 60 PRYFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 PR + +KP G + S DDP +V L + K + GRLD++T GL++ T G + Sbjct: 184 PRVILYHKPAGEIVSHDDPGGRASVFARLPKLRTGKWLSVGRLDLNTEGLLIFTTSGDMA 243 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT--PTQVRL 176 +RI PR+ E+ Y V + + D T + +G++L + + R+ Sbjct: 244 NRIMHPRYGTEREYAVRVLGEMDDATRKSLVEGIELEDGQAAFGALDYLGGDGSNRWYRV 303 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 T+ EGR +V+RMF +VG V L R R G + L L G + L + +++ Sbjct: 304 TLQEGRNREVRRMFESVGVTVSRLIRTRFGDLVLPRTLRRGRWEELDSSLVTALM 358 >UniRef50_A6EPE0 Pseudouridine synthase n=1 Tax=unidentified eubacterium SCB49 RepID=A6EPE0_9BACT Length = 291 Score = 260 bits (666), Expect = 3e-68, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 120/229 (52%), Gaps = 4/229 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL+K I+ SR A + I +VT++G V + + +P+ + +GN + + + Sbjct: 9 RLNKAISDSGYCSRRQADKLIEEGKVTLNGNPV-SLGDRAMPDDVIHVEGNLITENNNLV 67 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y +LNKP G C+TD V+ ++D ++ GRLD + GL+LMT+DG ++I Sbjct: 68 YIILNKPVGITCTTDLRVEGNVVDYIDH--KERIFHVGRLDKPSEGLLLMTNDGDIVNKI 125 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEG 181 + EK Y V ++ P+ + + G+ L + TK +E ++ R+ + +G Sbjct: 126 LRAGNSHEKEYFVKVDRPITTEFIRRMGNGIPLEELETTTKKCFVEQVSRFVFRIILVQG 185 Query: 182 RYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 Q++RM + V+EL RERI I L DL GE+R LT+EE+ + Sbjct: 186 LNRQIRRMCEYLDYEVMELKRERIMNIEL-GDLPYGEWRDLTKEELQGL 233 >UniRef50_UPI0001C37AA4 16s pseudouridylate synthase n=2 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37AA4 Length = 255 Score = 260 bits (665), Expect = 3e-68, Method: Composition-based stats. Identities = 94/234 (40%), Positives = 129/234 (55%), Gaps = 6/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RLDKFI+++ +R+ VTV+G V+ + K+ DV GN ++ Sbjct: 4 IRLDKFISERTEYTRSQIKSLCAKGSVTVNGSPVKRSDTKIDTGADDVTVCGNAISS-ER 62 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWS 118 RY +LNKP+GYV STDD D TV+ + + K L AGRLD D+TG +L+TDDG + Sbjct: 63 FRYILLNKPKGYVSSTDDKDGETVIKLVPPEMRSKGLFPAGRLDKDSTGALLITDDGALA 122 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP--TQVRL 176 HRI SP +H K Y L P + E+FAKG+ L N + P ++ + Sbjct: 123 HRICSPNNHISKIYAAELSRPFEQEYVEKFAKGIVLANGEA-CSPCKVQKAENADNLAFV 181 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EG YHQVKRMFAAVGNHV L R IGG+ L DL G+ L ++I + Sbjct: 182 ELHEGMYHQVKRMFAAVGNHVENLKRISIGGLILPKDLPLGKCMYLLPKDIEQM 235 >UniRef50_A9GX03 Pseudouridine synthase n=2 Tax=Bacteria RepID=A9GX03_SORC5 Length = 399 Score = 260 bits (665), Expect = 3e-68, Method: Composition-based stats. Identities = 71/229 (31%), Positives = 115/229 (50%), Gaps = 5/229 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLL-PEHDVAYDGNPLAQQHGP 60 RL K IA+ SR + I RV V+G +V K + + DG L P Sbjct: 4 RLQKIIARAGVASRRASEELILAGRVRVNGRVVTELGLKADRQKDRIEVDGKRLVS-EAP 62 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y L+KP+ V + DP+ + +L+ GRLD T+G++LMT+DG +++ Sbjct: 63 VYVALHKPRNVVSTLRDPEGRPTVADHVRGTGARLYPVGRLDFATSGILLMTNDGDFANA 122 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRLTI 178 + PR KTY++ ++ ++DD + +G++L + L A L T + +T+ Sbjct: 123 LLHPRGGVPKTYVLKVQGVMSDDDLTPWREGIRLEDGVTLPAEARLLRHEGDKTWLEVTL 182 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 EGR Q++RM A G V+ L R G++ + L PGE+R LT +E+ Sbjct: 183 REGRNQQIRRMGEATGWPVMRLARTTFAGVSSEG-LRPGEWRALTVDEL 230 >UniRef50_Q2NIZ3 Pseudouridine synthase n=5 Tax=Candidatus Phytoplasma RepID=Q2NIZ3_AYWBP Length = 245 Score = 260 bits (665), Expect = 3e-68, Method: Composition-based stats. Identities = 74/237 (31%), Positives = 123/237 (51%), Gaps = 11/237 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K +A SR A I R+ V+G+I+ K+ + D P+ + Sbjct: 3 RLQKVLAYANVASRRKAEILILEKRIKVNGKIISELGTKVSSSDIITLDDKPITKAT-YS 61 Query: 62 YFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 YF+LNKP G++ + D PTVL ++E +L+ GRLD +TTGL+L+T+DG + + Sbjct: 62 YFLLNKPNGFLSTAKDKKNRPTVLDLIEEASIQRLYPIGRLDFNTTGLLLITNDGDLTQK 121 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT-------PTQ 173 +T P K Y V + + + F KG+ + ++K L ++++ T Sbjct: 122 LTHPSFCIPKEYHVKINACLQKKDLSTFCKGIII-DKKYLAVCKEIDILKISYMPKPSTW 180 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 ++L I+EG+ QV++M A+G V++L R R +T++ +L G YRPL EI + Sbjct: 181 LKLVITEGKNRQVRKMMQALGYQVLKLKRYRYSFLTIE-NLTIGAYRPLKIHEIKKL 236 >UniRef50_B0VG32 Pseudouridine synthase n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VG32_9BACT Length = 279 Score = 260 bits (665), Expect = 3e-68, Method: Composition-based stats. Identities = 70/234 (29%), Positives = 119/234 (50%), Gaps = 4/234 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL++++A SR I R+ V+G +V++ + +++P V DG P+ Sbjct: 40 LRLNRYLADCGLGSRRKVEEFITTGRIAVNGNLVQDLSRQIIPGKDKVTLDGKPIQPAKE 99 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+GYV S +D +Y L P +L AGRLD ++ GL+ T+D + Sbjct: 100 KFYLILNKPRGYVVSQNDELGRKTVYSLLPPKGKQLAYAGRLDKESEGLLFFTNDTALIN 159 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT--QVRLT 177 +T P++ EK Y V + P+ + KGV++ K L ++ +++ Sbjct: 160 LLTHPKNKVEKVYRVDINRPLNNMELNMLRKGVEIEGGKTLPAGIFVKSKNANGMTLKIV 219 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 I+EGR Q+++M AVG V L R + G + L DL G +R L E+ +++ Sbjct: 220 ITEGRKRQIRQMIEAVGAKVTYLKRLQFGPLKL-KDLPVGRWRLLEPGEVKALL 272 >UniRef50_Q01SF5 Pseudouridine synthase n=3 Tax=Bacteria RepID=Q01SF5_SOLUE Length = 249 Score = 260 bits (665), Expect = 4e-68, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 115/231 (49%), Gaps = 3/231 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL K ++Q SR A + ++ RVTV+G ++ K + + DG L Sbjct: 5 RLQKILSQAGVSSRRQAEKLMQEGRVTVNGSVITELGSKADLDRDHIKVDGRLLKAPKHQ 64 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y LNKP+G V + DP+ + L V +++ GRLD + GL+L+T+DG+ ++ Sbjct: 65 IYIALNKPKGTVTTVHDPEGRETVMDLLHRVKERVYPVGRLDYHSEGLLLLTNDGELANS 124 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAV-LEVITPTQVRLTIS 179 I S H EKTY+V + + + E+F GV L + L L + ++ Sbjct: 125 IMSAATHLEKTYVVKVTGTLTAEQEEKFRTGVPLSGRRTLPAGLKLLSRAENPWYEVKLT 184 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EGR +Q++ MF G V +L R RIG I L L G +R L EE++A + Sbjct: 185 EGRNNQIRMMFRHFGKLVEKLKRVRIGPIEL-GTLKTGAFRYLDEEDVAKL 234 >UniRef50_Q12AB3 Pseudouridine synthase n=8 Tax=Proteobacteria RepID=Q12AB3_POLSJ Length = 544 Score = 260 bits (665), Expect = 4e-68, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 113/234 (48%), Gaps = 7/234 (2%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQ---QHG 59 L K +AQ SR + I R++V+ E + ++ V +G P+ Sbjct: 99 LHKVLAQAGLGSRLEMEQLILEGRISVNAEPA-HIGQRIQFGDTVKVNGKPIRVRIDPPP 157 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 PR +KP G V + DDP PTV L + K + GRLD++T GL+L+T G+ + Sbjct: 158 PRVIAYHKPSGEVVTHDDPQNRPTVFRRLPKLFQGKWQSVGRLDLNTEGLLLLTSSGELA 217 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTK--PAVLEVITPTQVRL 176 +++ PR E+ Y V + ++++ ++ +GV L + A R+ Sbjct: 218 NKLMHPRFGLEREYAVRVLGALSNEEKKRLLEGVTLDDGVAQFSSIEAGGGEGANCWYRV 277 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 TISEGR +V+RMF AVG+ V L R R G + L L G + L E +I ++ Sbjct: 278 TISEGRNREVRRMFEAVGHAVSRLIRIRYGAMLLPRGLKRGAFVELDERDIWAL 331 >UniRef50_A1K3P0 Pseudouridylate synthase n=3 Tax=Betaproteobacteria RepID=A1K3P0_AZOSB Length = 500 Score = 259 bits (664), Expect = 4e-68, Method: Composition-based stats. Identities = 76/241 (31%), Positives = 112/241 (46%), Gaps = 17/241 (7%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL K +A + SR A I V VDG V ++ P+ V Q Sbjct: 262 VRLSKVMADRGICSRREADELIERGWVFVDGRRVSELGTRIDPDARVVLAPEAKKAQAQR 321 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLD--------------EPVAWKLHAAGRLDIDTT 106 +L+KP GYV +P + + + L AGRLDID+T Sbjct: 322 VTILLHKPVGYVSGQPEPGYEPAVTLIGGDNQFDRDVAQRFHPSQLKGLAPAGRLDIDST 381 Query: 107 GLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL 166 GL+++T DG+ + ++ EK YLV +E + DD G+ L ++ +PA + Sbjct: 382 GLLVLTQDGRIARQLIGDDSKVEKEYLVRVEGELVDDGLALLNHGLSLDDKPL--RPAKV 439 Query: 167 EVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 E I Q+R + EGR Q++RM VG VV L R RIG + L DL GE+R L ++E Sbjct: 440 EWINEDQLRFVLKEGRKRQIRRMCELVGLRVVGLKRVRIGRVKL-GDLPLGEWRYLRDDE 498 Query: 227 I 227 + Sbjct: 499 V 499 >UniRef50_D1PIW4 Pseudouridine synthase n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PIW4_9FIRM Length = 237 Score = 259 bits (664), Expect = 4e-68, Method: Composition-based stats. Identities = 96/233 (41%), Positives = 139/233 (59%), Gaps = 3/233 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLA-QQHG 59 MRLDK+++++ G++R+ + + I RV V+G + R A ++ + +A DG PLA Sbjct: 2 MRLDKYLSERTGLTRSESRKAITKGRVAVNGMVCRKADTQVAEDAAIAVDGTPLAGSYQK 61 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWS 118 Y MLNKP+G V ++ D TV+ + + L AGRLD +TG VL+TDDG + Sbjct: 62 YVYIMLNKPEGVVSASRDKRDTTVVDLVAADFPRRALFPAGRLDKTSTGFVLLTDDGALA 121 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDL-TKPAVLEVITPTQVRLT 177 H + SP HH +K YLVTL++P+ D FA GV L + + + A P V++T Sbjct: 122 HDLLSPAHHVDKQYLVTLDTPLTDAMRAGFAAGVTLADGETMAPAEAEPAGEDPCVVKVT 181 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + +G YHQ+KRMF G V LHR IGG+ LDA LAPG++R LT EE+A + Sbjct: 182 LHQGVYHQIKRMFGVYGAGVNALHRYAIGGVALDAALAPGQWRELTAEELALL 234 >UniRef50_C0W3E8 Pseudouridine synthase n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W3E8_9ACTO Length = 325 Score = 259 bits (664), Expect = 4e-68, Method: Composition-based stats. Identities = 73/244 (29%), Positives = 118/244 (48%), Gaps = 16/244 (6%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL K +A SR I RV+VDG +V ++ P ++ DG+ + Sbjct: 77 RLQKVLAHAGVASRRACEEIIAAGRVSVDGVVVTEPGVRVDPSRQEIRVDGSRVLTDPDV 136 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYF-----------LDEPVAWKLHAAGRLDIDTTGL 108 +L+KP G V + +DP PTV L+ P + +L GRLD +T GL Sbjct: 137 ITVLLHKPAGVVTTMEDPQGRPTVADLAEQFISEHRTELEHPESVRLVHVGRLDTETEGL 196 Query: 109 VLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEV 168 +L+++DG +HR+ P KTY+ +E V + +G++L + V++ Sbjct: 197 LLLSNDGDLAHRLMHPSFEISKTYVAIVEGQVEGWVPRKLRRGIELDDGLAQADRVVVKD 256 Query: 169 ITP--TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 P + V +T+ G+ V+RM AVG+ V L R ++G + + L PG+ R LT EE Sbjct: 257 AGPSGSIVEITLHSGKNRIVRRMLDAVGHPVTRLARTKLGPLGI-GGLRPGQMRRLTGEE 315 Query: 227 IASV 230 I ++ Sbjct: 316 ITAL 319 >UniRef50_B0RHF4 Pseudouridine synthase n=3 Tax=Actinobacteria (class) RepID=B0RHF4_CLAMS Length = 291 Score = 259 bits (664), Expect = 4e-68, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 109/234 (46%), Gaps = 4/234 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL K +A SR + I RVTV+GE V ++ P+ +VA D + Sbjct: 25 VRLQKVMAAAGVASRRVCEDMIAAGRVTVNGETVTEPGRRIDPDVDEVAVDDQAVQLDTS 84 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 RY MLNKP G S D L E +L GRLD +T+GL+++T+DG +H Sbjct: 85 KRYLMLNKPVGIYSSLRDERGRPDLREFTEEFEERLFNVGRLDAETSGLLILTNDGDLAH 144 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRLT 177 + P KTY+ + V T ++ +GV L + A + T V +T Sbjct: 145 VLAHPSFGVLKTYIAKVTGRVTPQTIQRLTQGVDLEDGPIQADRARILSGGGDQTLVEIT 204 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 + GR V+RM VG+ V EL R + G + L L G R LT +E+ ++ Sbjct: 205 LHSGRNRIVRRMLDEVGHPVEELVRRQFGPLHL-GSLGVGRVRDLTSDELGQLL 257 >UniRef50_C5EVC9 Pseudouridine synthase n=6 Tax=Clostridiales RepID=C5EVC9_9FIRM Length = 294 Score = 259 bits (664), Expect = 4e-68, Method: Composition-based stats. Identities = 77/237 (32%), Positives = 125/237 (52%), Gaps = 12/237 (5%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLA------- 55 L+K+++Q SR A R I +V VDG K+ P V DG P+ Sbjct: 36 LNKWLSQMGVCSRREADRLIEAGKVWVDGSPA-AMGQKVKPGQKVVCDGVPVNGGSGADS 94 Query: 56 QQHGPRYFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDD 114 ++ P ++NKP+G VC+T D D ++ +LD P +++ GRLD D+ GL+LMT+ Sbjct: 95 RKPKPVLLVVNKPRGIVCTTSDKDRAMNIVEYLDYP--ERIYPVGRLDKDSEGLLLMTNQ 152 Query: 115 GQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQV 174 G ++I + EK Y+VT++ P+ DD ++ AKG+ L + +T+P ++ + Sbjct: 153 GDLVNKIMRSGNAHEKEYIVTVDRPLTDDAMDRMAKGIYLRELETVTRPCKVKRVDGKTF 212 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 + +++G Q++RM A G HV L R RI I LD L G R + +EE ++ Sbjct: 213 SIILTQGLNRQIRRMCEACGCHVERLVRVRIMNIRLDG-LETGASREVGQEEYRELM 268 >UniRef50_Q140U9 Pseudouridine synthase n=80 Tax=Proteobacteria RepID=Q140U9_BURXL Length = 633 Score = 259 bits (664), Expect = 4e-68, Method: Composition-based stats. Identities = 67/235 (28%), Positives = 112/235 (47%), Gaps = 7/235 (2%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQ---HG 59 L K +A+ SR I RV+V+GE + +++P V +G P+ ++ Sbjct: 219 LHKVLAEAGMGSRRDMEELIVAGRVSVNGEPA-HIGQRIMPTDQVRINGKPVKRKLASKP 277 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 PR + +KP G + S DP+ P+V L K A GRLD +T GL+++T G + Sbjct: 278 PRVLLYHKPTGEIVSHADPEGRPSVFDKLPPMKTAKWLAVGRLDFNTEGLLMLTTSGDLA 337 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRL 176 +R PR+ E+ Y V + +A+ ++ GV+L + T + Sbjct: 338 NRFMHPRYSVEREYAVRVVGELAEGMRQKLLHGVELDDGPANFLRIRDGGGEGTNHWYHV 397 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 ++EGR +V+RMF A G V L R R G I+L L G + L + ++ +++ Sbjct: 398 ALAEGRNREVRRMFEAAGLMVSRLIRTRHGPISLPKGLKRGRWEELEDNQVRALM 452 >UniRef50_D1C7P2 Pseudouridine synthase n=1 Tax=Sphaerobacter thermophilus DSM 20745 RepID=D1C7P2_SPHTD Length = 337 Score = 259 bits (664), Expect = 4e-68, Method: Composition-based stats. Identities = 83/235 (35%), Positives = 123/235 (52%), Gaps = 10/235 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL + +A SR A I RVTVDG++VR ++ PE ++ DG L + Sbjct: 3 RLQRVLAAHGVASRRKAEELITAGRVTVDGQVVRELGVRVDPERQEIRVDGKRL-RPERR 61 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 RY MLNKP GY+ + D TV+ + V ++ AGRLD T GL+L+T+DG Sbjct: 62 RYIMLNKPPGYITTVSDERGRRTVMDLV--QVPERVVPAGRLDRPTAGLLLLTNDGDLLF 119 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLT---KPAVLEVITPTQVRL 176 RIT PR+ EK Y V ++ + +Q +GV + E+ + +P +E T +R+ Sbjct: 120 RITHPRYELEKEYEVLVDGHPPPEVLDQLRRGVTVDGERVVPDQVRPLRIEEAG-TVLRI 178 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 I EGR V+RM VG V++L R RIG I + + G +R LT E+ ++ Sbjct: 179 VIHEGRNRIVRRMMDRVGYPVLKLTRTRIGPIHVRG-VPLGAWRDLTPGEVMQLL 232 >UniRef50_A1K7C2 Pseudouridine synthase n=1 Tax=Azoarcus sp. BH72 RepID=A1K7C2_AZOSB Length = 356 Score = 259 bits (664), Expect = 5e-68, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 113/235 (48%), Gaps = 7/235 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQ---QH 58 RL K +AQ SR + R++V+G + K+ P V +G + Q Sbjct: 92 RLQKVLAQAGVASRREIEELVVAGRISVNGLPA-SLGQKIGPGDRVKLNGKLIPLRFSQR 150 Query: 59 GPRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 PR + +KP+G + S DDP+ PTV L + A GRLD +T+GL+L T+DG Sbjct: 151 SPRVLVYHKPEGEIVSRDDPEGRPTVFERLPLLRKGRWLAVGRLDFNTSGLLLFTNDGDL 210 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT--PTQVR 175 ++R+ PR+ + Y V L + ++ + G+QL + V R Sbjct: 211 ANRLMHPRYELTREYAVRLLGQLTEEQGQSLVDGIQLEDGPARFLSLVDAGGEGVNHWYR 270 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +T++EGR +V+RMF AVG V L R R G + L A L G + L E + ++ Sbjct: 271 VTLAEGRNREVRRMFEAVGLTVSRLMRVRYGPVELPARLKRGMWMELPEADACAL 325 >UniRef50_A6G735 Pseudouridine synthase n=2 Tax=Bacteria RepID=A6G735_9DELT Length = 300 Score = 259 bits (664), Expect = 5e-68, Method: Composition-based stats. Identities = 75/239 (31%), Positives = 116/239 (48%), Gaps = 10/239 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL KF+A SR A I V V+G++VR ++ PE V G P+ Sbjct: 31 VRLQKFMASAGVASRRKAEELITAGVVRVNGQVVRELGTRVFPERDRVTVRGEPIQ-AES 89 Query: 60 PRYFMLNKPQGYVCSTD---DPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQ 116 Y++LNKP G V S D + L V+ +L+ GRLD + G++L+T+DG Sbjct: 90 KVYYVLNKPDGVVSSAAGSVDERGRPTVISLLHGVSERLYPVGRLDFHSRGVLLLTNDGG 149 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT---- 172 + +T PRH KTY V + + ++ + GV+L + A L T Sbjct: 150 LAEALTHPRHGVVKTYHVKFQGKLTEEQEQLLRDGVELDDGAITRPVAELFAFRETATNV 209 Query: 173 QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 ++ I EG Q++RM A+G+ V++L R IG IT D + GE+R L E+ ++ Sbjct: 210 WYQIGIREGLNRQIRRMGEAIGHPVLKLIRVAIGDITADG-VPEGEFRALNATEVGQLL 267 >UniRef50_C5BI29 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=C5BI29_TERTT Length = 238 Score = 259 bits (662), Expect = 7e-68, Method: Composition-based stats. Identities = 106/236 (44%), Positives = 140/236 (59%), Gaps = 7/236 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF+A SR+ ++ R+ V+G+ + L + +V D PL + Sbjct: 1 MRLDKFVADNTSYSRSQVRGLLKAKRIRVNGQTALAPSAALKSDDEVTLDDAPLQARSD- 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFL------DEPVAWKLHAAGRLDIDTTGLVLMTDD 114 Y ML+KP GYVC+ D +HPTV +L AGRLD+DTTGLVL+T D Sbjct: 60 VYLMLHKPAGYVCANTDAEHPTVFDLPGFSARYSNADIARLQIAGRLDLDTTGLVLITSD 119 Query: 115 GQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQV 174 GQW+HRITSPR C K Y V +P+A +T FA+GV LH EK T PA LE+++ Sbjct: 120 GQWNHRITSPRQKCRKAYYVECAAPIAAETKSAFAEGVLLHGEKRPTLPAELELLSANTA 179 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 L I +G YHQVKRMFA+ GN V+ LHR +IG + L+ DL PG+ R LT +EI + Sbjct: 180 NLYIEQGIYHQVKRMFASTGNKVLRLHRFQIGALALETDLLPGDMRALTSDEIRLL 235 >UniRef50_D1N1S2 Pseudouridine synthase n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N1S2_9BACT Length = 241 Score = 259 bits (662), Expect = 7e-68, Method: Composition-based stats. Identities = 79/228 (34%), Positives = 115/228 (50%), Gaps = 4/228 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K ++ SR AG I+ RVTV+GE V F++ P V YDG P+ + Sbjct: 8 RLVKILSAAGIASRRGAGDLIKAGRVTVNGETVFEPGFRVAPGDRVEYDGVPVLAEERKV 67 Query: 62 YFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y MLNKP+GYVC+ DP + + +L +AGRLD D+ GL+L ++DG + R Sbjct: 68 YIMLNKPRGYVCTNADPHADLKAVDLIRLTPPLRLFSAGRLDKDSEGLILFSNDGDYVAR 127 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 +T PRH K Y V + EQ +GV E + +T++E Sbjct: 128 LTHPRHEILKVYQVRVRREFKPAELEQMRRGVLERGELLKVHA--VSRCGDCTYLITLNE 185 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 G+ +++R+ AA+G+ L R +IG + L L G +R LT EIA Sbjct: 186 GKNREIRRLTAALGSPTRRLKRLQIGALRL-GGLPVGNWRELTPAEIA 232 >UniRef50_Q1IJT7 Pseudouridine synthase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJT7_ACIBL Length = 680 Score = 259 bits (662), Expect = 7e-68, Method: Composition-based stats. Identities = 77/255 (30%), Positives = 121/255 (47%), Gaps = 29/255 (11%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL K IA SR A + RVTV+GE+ K PE D+ DG PL Sbjct: 5 RLQKIIAAAGMASRRKAEELVTAGRVTVNGEVKNELGSKADPETDDIRVDGKPLK-AEQL 63 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +L+KP+GYV + DP+ + L + + +L+ GRLD + GL+L+T+DG+ + + Sbjct: 64 VYVLLHKPKGYVTTVSDPEGRETVMDLVKGIPARLYPVGRLDYLSEGLLLLTNDGEMAAK 123 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQL------------HNEKD--------- 159 +T H K YLV + ++ ++ GVQL + Sbjct: 124 LTHASTHVPKKYLVKVSGEPTEEQIQELRNGVQLPPEQGHIHADPREGGRFGGEKRRSTA 183 Query: 160 -LTKPAVLEV---ITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLA 215 T P +E+ +T++EGR Q++RMF +G+HV ++ R G + L D+ Sbjct: 184 VKTAPCKIELTREGDNPWYEVTLNEGRNRQIRRMFDFIGHHVEKIKRVEYGPLKL--DVE 241 Query: 216 PGEYRPLTEEEIASV 230 GE+R L E+A + Sbjct: 242 NGEFRLLNPAEVARL 256 >UniRef50_Q1GFA6 Pseudouridine synthase n=3 Tax=Rhodobacteraceae RepID=Q1GFA6_SILST Length = 422 Score = 259 bits (662), Expect = 7e-68, Method: Composition-based stats. Identities = 58/229 (25%), Positives = 99/229 (43%), Gaps = 3/229 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +++ SR A R I RV V+G+++ + A + + DGNPL + PR Sbjct: 63 RIAKVLSRAGVASRREAERMIAEGRVAVNGKVIDSPALNVTNLDRIVVDGNPLPEAEAPR 122 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 ++ KP G V +T D ++ ++ GRLD+++ GL+L+T+DG ++ Sbjct: 123 LWLYYKPNGLVTTTSDEKGRKTIFDALPEDLPRVMTVGRLDLNSEGLLLLTNDGGVKRQL 182 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT--PTQVRLTIS 179 P + Y V + D + KGV + E+ L+ + + + Sbjct: 183 ELPSTGWLRRYRVRINGRPQDHEFDVLRKGVVIDGERFQPMTISLDRQQGANAWLTIGLR 242 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 EG+ +++R VG V L R G L L GE L + Sbjct: 243 EGKNREIRRAMEEVGYPVNRLLRISYGPFQL-GTLKEGEVEELRPRVVR 290 >UniRef50_Q042N1 Pseudouridine synthase n=3 Tax=Lactobacillus gasseri RepID=Q042N1_LACGA Length = 245 Score = 259 bits (662), Expect = 8e-68, Method: Composition-based stats. Identities = 89/235 (37%), Positives = 132/235 (56%), Gaps = 9/235 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR+DK++A SR I+ VTV+GE+V ++ VA DGN +A Sbjct: 13 MRIDKYLANMNVGSRKEVHSLIKKKVVTVNGELVTIPKQQVKETDLVAVDGNKIA-YQQY 71 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFL-DEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 YF+LNKP+G + +T+D TV+ L + + GRLD DTTGL+L+T+DG +H Sbjct: 72 HYFLLNKPKGVISATEDRSQQTVISLLKTKDRYQGIAPVGRLDKDTTGLLLLTNDGALAH 131 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP------TQ 173 + +P H K Y + +TA++FA+G+ L + L KPA L+++ +Q Sbjct: 132 ELLAPNKHVAKVYRAKIAGVPDPETAKKFAQGLILGDGTKL-KPAKLKILKQDQDNNLSQ 190 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 + + I EG+YHQ+KRMF AVG V+EL R +G + L ADL GEY+ + EI Sbjct: 191 IEIQIQEGKYHQIKRMFGAVGMKVLELDRVSMGKLHLPADLKRGEYKEIDLAEIK 245 >UniRef50_D1AL84 Pseudouridine synthase n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AL84_SEBTE Length = 233 Score = 259 bits (662), Expect = 8e-68, Method: Composition-based stats. Identities = 96/232 (41%), Positives = 137/232 (59%), Gaps = 5/232 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 MR+DKF+A +R ++ R++V+ E+V A + VA+DG + + Sbjct: 1 MRIDKFLANSGIGTRKEVKELLKKKRISVNDEVVTEAKTHIDEDNDFVAFDGKRIEFKE- 59 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAW-KLHAAGRLDIDTTGLVLMTDDGQWS 118 Y MLNKPQ + +TDD H TVL L+EP+ L GRLD DT GL+++T+DG+ + Sbjct: 60 FLYIMLNKPQDVISATDDERHRTVLDLLEEPLTKVGLFPVGRLDKDTEGLLVLTNDGKMA 119 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 H + SP+ H K Y V L+ ++ + A GV+L TKPA +E IT +V + I Sbjct: 120 HELLSPKKHVPKRYYVELKKTLSKEEAAILENGVELE--TFTTKPAKVEFITEDKVYIII 177 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 SEG+YHQVKRMF VGN V+ L R +G + LD +LAPGEYR LT +E+ + Sbjct: 178 SEGKYHQVKRMFKCVGNRVLFLKRTGMGNLGLDENLAPGEYRELTSDELEQL 229 >UniRef50_C1ZE67 Pseudouridine synthase n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZE67_PLALI Length = 554 Score = 258 bits (661), Expect = 9e-68, Method: Composition-based stats. Identities = 67/232 (28%), Positives = 114/232 (49%), Gaps = 5/232 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLL-PEHDVAYDGNPLAQQHGP 60 RL K +A SR I RVT+DG + + ++ VA DG L + Sbjct: 38 RLQKVLASAGYGSRRACEEYIEMGRVTIDGVVAKELGVRVDLSRQKVAVDGEKLRVEE-K 96 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 RYF+ +KP G +C+ DP T + P +L GRLD T GL+++T+DG + R Sbjct: 97 RYFLFHKPAGVLCTNSDPAGRTRVIDCFPPNVGRLFTVGRLDDGTEGLLIVTNDGDLAER 156 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQL-HNEKDLTKPAVLE-VITPTQVRLTI 178 +T P+ + Y + + + Q +G+ ++ ++ + T + +T+ Sbjct: 157 LTHPKFGIPRIYRAVVAGNPSTEAINQLLEGLYFAEGRFRMSSVNRVKSQGSATVLEITM 216 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EG+ +++R+ A VG+ V++L R G I L DL G +R L+EEE++ + Sbjct: 217 REGQNREIRRLLARVGHKVMKLKRTHFGPIKL-GDLERGAHRKLSEEELSKL 267 >UniRef50_A5EVQ2 Pseudouridine synthase n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EVQ2_DICNV Length = 266 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 70/242 (28%), Positives = 120/242 (49%), Gaps = 13/242 (5%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNP----LAQQ 57 R+ K++A + SR I+ R+ VDG + K+ ++ DG P + + Sbjct: 10 RIQKYLAARGVGSRRQIETWIKEGRLKVDGRVA-ELGQKISGNERLSLDGKPLRIAVEHK 68 Query: 58 HGPRYFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQ 116 + M +KP G +C+ DP+ +V L + + A GRLD++T+GL+L T+DG Sbjct: 69 NPHMILMYHKPAGEICTRKDPEGRVSVFQHLPKISHGRWVAIGRLDLNTSGLLLFTNDGA 128 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDL-TKPAVLEVI--TPTQ 173 ++++ P E+ Y V + V ++ +G+ L + T+ L+ + TQ Sbjct: 129 LANQLMHPSAEIEREYWVRVAGEVTEEMLTALRQGIPLDDGLARFTEICPLKTLHEDDTQ 188 Query: 174 ----VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 +T+ EGR +V+R++ AVG V L R R G I+L L+ G +R LT E AS Sbjct: 189 FNRYFSVTLKEGRNREVRRLWEAVGCKVSRLKRIRYGTISLPPSLSAGRHRLLTAGEQAS 248 Query: 230 VV 231 ++ Sbjct: 249 LI 250 >UniRef50_D2RB61 Pseudouridylate synthase n=2 Tax=Gardnerella vaginalis RepID=D2RB61_GARVA Length = 284 Score = 258 bits (661), Expect = 1e-67, Method: Composition-based stats. Identities = 71/234 (30%), Positives = 114/234 (48%), Gaps = 5/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL K +A+ SR I RV VD E+V ++ P+ V DG+ + Sbjct: 46 IRLQKLLAEAGFGSRRKCEEIILDGRVEVDDELVTTLGTRVDPKRQKVRVDGSRVKFNTK 105 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 L+KP+ + + DDP L + ++ GRLD D+ GL+LMT+DG+ S Sbjct: 106 LVTLALHKPKRVLSAMDDPKGRFTLRDIVGDKYERIFHMGRLDYDSEGLILMTNDGELSQ 165 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQF-AKGVQLHNEKDLTKPAVL--EVITPTQVRL 176 + P++ EKTY+ T+E + + ++GV L + + + T V++ Sbjct: 166 HVMHPKYEVEKTYIATVEGKINGMVCRRLVSQGVNLEDGWIKLDRCAIIDQNHDTTMVKI 225 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + G+ V+R+F AVG V L R +IG I L DL G YR L++ E+ S+ Sbjct: 226 VLHSGKNRIVRRIFGAVGFPVKRLVRTQIGPIKL-GDLKAGSYRVLSQTEVRSL 278 >UniRef50_C8WAL4 Pseudouridine synthase n=7 Tax=Coriobacteriaceae RepID=C8WAL4_ATOPD Length = 279 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 83/254 (32%), Positives = 126/254 (49%), Gaps = 27/254 (10%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 MRL +F+A+ SR + R + RVTV+G++V K+ P VA DG + Sbjct: 9 MRLQRFLARAGVASRRGSERLMTSGRVTVNGQVVTELGSKVDPLVDVVAVDGVVCSIAEK 68 Query: 60 PRYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 P Y MLNKP GY+ + DP PT++ + L GRLD+DTTGL+ T DGQ + Sbjct: 69 PVYLMLNKPAGYLTTMKDPQGRPTIVDMVPTDTYPGLFPVGRLDMDTTGLLFFTTDGQMA 128 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT-------- 170 + P H K Y+ + ++ + +G++L + PA +E+I+ Sbjct: 129 QELLHPSKHVWKHYVAHVVGTPTEEQLNRLREGIELEDGPA--APAEVEIISDDVKMKNL 186 Query: 171 --------------PTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAP 216 V +TI EGR HQVK+M A+ + V+ LHR+ G + L + Sbjct: 187 LAPQGLGKTGGGEPNALVSVTIREGRKHQVKKMLLAIHHRVLALHRDTFGPLHLT-RVKE 245 Query: 217 GEYRPLTEEEIASV 230 GE+R LTEEE+ ++ Sbjct: 246 GEWRLLTEEEVTAL 259 >UniRef50_C4XSY8 Pseudouridine synthase n=11 Tax=Desulfovibrionales RepID=C4XSY8_DESMR Length = 322 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 76/237 (32%), Positives = 114/237 (48%), Gaps = 9/237 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQ-QHG 59 R++K +A SR A I RVTV+G +V A ++ P +A DG P+ Sbjct: 10 RINKALASAGVCSRRHADDLIAAGRVTVNGAVVTEAGLRIDPARDALAVDGAPVNLAPEI 69 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVA-WKLHAAGRLDIDTTGLVLMTDDGQW 117 P L+K G V + DP+ PTV L E +L GRLD + GL+L+T DG+ Sbjct: 70 PITLALHKKPGVVTTASDPEGRPTVFDGLPEVWRGKRLFPVGRLDFFSEGLLLLTTDGEL 129 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQL-HNEKDLTKPAVLEVI---TPTQ 173 + R+T PR H K Y VT+ V D A+G++L E+ A + + Sbjct: 130 ALRLTHPRWHVPKRYRVTVRGQVTPDMLGTMARGMRLAEGERLAPVAARVVEGPAQDRSI 189 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + + + +G Q++RM +G V+ L R G + L DL G R LT E+A++ Sbjct: 190 LEMELHQGVNRQIRRMCRDLGLTVLRLARVSQGPVAL-GDLPLGACRELTPAELATL 245 >UniRef50_C5WHE9 Pseudouridine synthase n=3 Tax=Lactobacillales RepID=C5WHE9_STRDG Length = 245 Score = 258 bits (660), Expect = 1e-67, Method: Composition-based stats. Identities = 88/238 (36%), Positives = 131/238 (55%), Gaps = 11/238 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 MRLDKF+ + SR+ ++ + V+ E+ + ++ V Y G PL Sbjct: 3 MRLDKFLVETGVGSRSQVKSLLKKKAILVNQEVETSPKVQINEHKDVVTYLGKPLT-YEA 61 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWS 118 Y++LNKP G++ +T D TV+ LDE K + GRLD DT GL+L+T++GQ + Sbjct: 62 FVYYILNKPAGFLSATKDRAQATVIDLLDETARQKDVFPVGRLDKDTRGLLLLTNNGQLA 121 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ----- 173 H + SP+ H K YL + + D + FAKG+ L + + PA LEV+ Sbjct: 122 HDLLSPKKHVTKEYLAKVAGIMTDADKDDFAKGISLKDHQ--CLPAKLEVLDKDLSQETC 179 Query: 174 -VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 V +TI EG++HQVKRM AA G V+EL R +G + LD LA G++R LT +E+ S+ Sbjct: 180 VVSITIQEGKFHQVKRMVAACGKEVLELQRLSMGPLRLDPGLAEGDFRRLTSDELQSL 237 >UniRef50_C7H4Z6 Pseudouridine synthase n=1 Tax=Faecalibacterium prausnitzii A2-165 RepID=C7H4Z6_9FIRM Length = 235 Score = 257 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 92/233 (39%), Positives = 139/233 (59%), Gaps = 5/233 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDK++A+ +R+ A + RVTV+G + + +L VA DG PLA Sbjct: 1 MRLDKYLAETAQCTRSEAKTLLNRGRVTVNGAVCKKGDTQLREGDSVAVDGAPLA-YRQF 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWSH 119 Y MLNKP+G V ++ D TV+ + + + L GRLD +TG VL+TDDG ++H Sbjct: 60 VYLMLNKPEGVVSASTDKRDTTVVDLIGDAYPRRELFPVGRLDKTSTGFVLLTDDGGFAH 119 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT--QVRLT 177 I +P+ H KTY V +++P+ ++ FA+GV L + L+ PA +E +TP V++ Sbjct: 120 EILAPKRHVSKTYTVVIDTPLTEEMRRGFAEGVTLADGTALS-PAEVEALTPDGLTVKVR 178 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + +G YHQ+KRMF G V LHR+ IGG+ LD LAPG++R L+ EE+ ++ Sbjct: 179 LRQGVYHQIKRMFGVYGAGVNALHRDAIGGLALDPALAPGQWRELSAEEVTAI 231 >UniRef50_O32068 Uncharacterized RNA pseudouridine synthase ytzG n=68 Tax=Bacteria RepID=YTZG_BACSU Length = 239 Score = 257 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 89/226 (39%), Positives = 128/226 (56%), Gaps = 8/226 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 MRLDK +A SR ++ V +DG+ ++ + P+ +V G P+ + Sbjct: 1 MRLDKLLANSGYGSRKEVKAVVKAGAVMIDGKPAKDVKEHVDPDTQEVTVYGEPVDYRE- 59 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFL-DEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y M+NKPQG + +T+D TV+ L E + ++ AGRLD DT G +L+T+DGQ + Sbjct: 60 FIYLMMNKPQGVLSATEDSRQQTVVDLLTPEEMRFEPFPAGRLDKDTEGFLLLTNDGQLA 119 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TPTQV 174 HR+ SP+ H KTY V L+S ++ + GV + TKPA E+ T + Sbjct: 120 HRLLSPKKHVPKTYEVHLKSQISREDISDLETGVYIEGG-YKTKPAKAEIKTNDSGNTVI 178 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYR 220 LTI+EG+YHQVK+M AVGN VV L R +G ++LD LAPGEYR Sbjct: 179 YLTITEGKYHQVKQMAKAVGNEVVYLKRLSMGRVSLDPALAPGEYR 224 >UniRef50_Q3IC94 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q3IC94_PSEHT Length = 327 Score = 257 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 68/227 (29%), Positives = 111/227 (48%), Gaps = 6/227 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL+KFI+ SR A + I RVTV+G K+ V DG L Sbjct: 6 RLNKFISDTGFCSRREADKYIEDGRVTVNGIR-PEMGVKVSSTDVVLVDGKTLKAIPKRV 64 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y NKP G C+T+ ++ ++ P ++ GRLD + GL+ +T++G ++I Sbjct: 65 YIAYNKPVGITCTTERKIQSNIVKAVNYPD--RIFPIGRLDRPSEGLIFLTNEGDIVNKI 122 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEG 181 ++ EK Y+VT++ P+ + GV + + +TK + Q + +++G Sbjct: 123 LRAGNNHEKEYVVTVDKPLNRQFVAKMGNGVPILD--TITKKCKVTQTGAQQFTIILTQG 180 Query: 182 RYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 Q++RM +G VV L R RI +TL L G++R LTE+E+A Sbjct: 181 LNRQIRRMCEYLGYEVVTLKRVRIMNVTLKG-LKVGQWRHLTEQEMA 226 >UniRef50_C4V2S0 Pseudouridine synthase n=1 Tax=Selenomonas flueggei ATCC 43531 RepID=C4V2S0_9FIRM Length = 290 Score = 257 bits (658), Expect = 2e-67, Method: Composition-based stats. Identities = 85/235 (36%), Positives = 118/235 (50%), Gaps = 10/235 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL K I+ SR A IR RVTVDG V K H++A DG P+ + Sbjct: 4 RLQKIISNAGAASRRAAEALIRAGRVTVDGLPVTALGGKYDAARHEIAVDGTPIRRNERR 63 Query: 61 RYFMLNKPQGYVCST-DDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +L+KP+G + + DD TVL L +L+ GRLD DT GL+++T+DG + Sbjct: 64 FYILLHKPRGCLSTAYDDRGRRTVLDLLPH-FPARLYPVGRLDADTEGLLIITNDGAMTQ 122 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TPTQVR 175 + PR +K Y + V +D G+ L + + T PA L V+ T V Sbjct: 123 GLLHPRFEIDKVYRAEVTGNVTEDGLTALRNGILLDDGR--TAPARLRVLHREGERTVVE 180 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I EGR QV+RMFAA+G V L R R +TLD ++ G +R LT +EI + Sbjct: 181 TIIHEGRKRQVRRMFAAIGCRVQRLCRVRFAMLTLDG-VSCGSFRHLTSDEIHEL 234 >UniRef50_C0QWY7 Pseudouridine synthase n=2 Tax=Brachyspira RepID=C0QWY7_BRAHW Length = 229 Score = 257 bits (658), Expect = 2e-67, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 122/231 (52%), Gaps = 6/231 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL+K+IA SR A R I+ V V+G I N A ++ + + Sbjct: 1 MRLNKYIASLNLASRREADRLIQNGNVKVNGIINTNPATQVDENDKIECSIE--QYKENK 58 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y LNKP+GYV S++ + + + + ++ GRLD D++GL+L T+DG ++ + Sbjct: 59 IYIKLNKPRGYVVSSNKNEGKPIYNLI-KKDFDNIYPVGRLDKDSSGLILFTNDGVFAKQ 117 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 I +CEK Y V ++ + D ++ G+ L +K KPA ++ + + ++E Sbjct: 118 IIGENTNCEKEYYVRVDDNIPDGALQKLEYGISLDGQKL--KPAKVKRVNKNSFHIILTE 175 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 G+ Q++RM VG V+ L R RI GI L+ DL G ++ LT+EEI S++ Sbjct: 176 GKNRQIRRMCQKVGFEVIILKRLRISGILLE-DLKEGTFKSLTKEEIESIL 225 >UniRef50_Q1J642 Pseudouridine synthase n=51 Tax=Streptococcus RepID=Q1J642_STRPF Length = 244 Score = 257 bits (658), Expect = 2e-67, Method: Composition-based stats. Identities = 87/238 (36%), Positives = 133/238 (55%), Gaps = 11/238 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 MRLDKF+ +R+ ++ + V+ ++ +A + + V Y G PL Sbjct: 2 MRLDKFLVATGVGTRSQVKLLLKKKAIFVNQKVETSAKAHIDEYKDLVTYQGTPLV-YES 60 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWS 118 Y++LNKP GYV +T D TV+ LD+ K + GRLD DT GL+L+T++GQ + Sbjct: 61 FVYYLLNKPSGYVSATQDRQQATVMELLDDTARQKTVFPVGRLDKDTRGLLLLTNNGQLA 120 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP------T 172 H + SP+ H K YL + + + + FA+G+ L + + PA LEV+ + Sbjct: 121 HDLLSPKKHVTKEYLAKVAGIMTEADKDYFARGISLKDHQ--CLPAHLEVLASDLQQQTS 178 Query: 173 QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 V++TI EG++HQVKRM AA G V++L R +G + LD LA GE+R LT EE+ S+ Sbjct: 179 LVKITIQEGKFHQVKRMVAACGKEVLDLQRLSMGPLKLDPSLAEGEFRRLTPEELQSL 236 >UniRef50_A1WE21 Pseudouridine synthase n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WE21_VEREI Length = 520 Score = 257 bits (657), Expect = 3e-67, Method: Composition-based stats. Identities = 71/232 (30%), Positives = 111/232 (47%), Gaps = 7/232 (3%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP-- 60 L K +AQ SR + I R++V+ E + ++ V +G P+ + P Sbjct: 173 LHKVLAQAGLGSRLEMEQLILEGRISVNNEPA-HIGQRIQFGDQVKVNGKPIRYRIDPPP 231 Query: 61 -RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 R +KP G V S DDP PTV L V K + GRLD++T GL+L+T G+ + Sbjct: 232 ARVIAYHKPVGEVVSHDDPHNRPTVFRRLPRLVQGKWQSVGRLDLNTEGLLLLTSSGELA 291 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKD--LTKPAVLEVITPTQVRL 176 +++ PR E+ Y V + ++++ ++ GV+L + T R+ Sbjct: 292 NQLMHPRFGLEREYAVRVLGALSNEEKQKLLDGVRLDDGIASFGTIEDGGGEGANCWYRV 351 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 TI+EGR +V+RM AVG+ V L R R G + L L G + L E +I Sbjct: 352 TIAEGRNREVRRMLEAVGHAVSRLIRIRYGAMVLPRGLKRGTWLELDERDIR 403 >UniRef50_B9XS61 Pseudouridine synthase n=1 Tax=bacterium Ellin514 RepID=B9XS61_9BACT Length = 235 Score = 257 bits (657), Expect = 3e-67, Method: Composition-based stats. Identities = 88/234 (37%), Positives = 129/234 (55%), Gaps = 5/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 +RL KF+A+ SR + R I G RV+V+G+ VR K+ P +A DG PL + Sbjct: 2 VRLQKFLAEAGVASRRASERIILGGRVSVNGDTVRELGTKVDPIHDSIALDGAPLRLK-R 60 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y LNKP+GYVCS D V+ L L++ GRLD D+ GL+ +T+DG++S Sbjct: 61 KLYVALNKPRGYVCSRKDDRKRKVIGDLLPAEWDNLYSVGRLDSDSEGLIFLTNDGEFSL 120 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAV-LEVITPT-QVRLT 177 +T PR+ K YL T+E V + ++F G+ EK A L V T V L Sbjct: 121 HLTHPRYRVLKKYLATVEGRVEQEMLQRFKHGIVHEGEKLKVDRARTLSVQNSTSLVELE 180 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 ++EG+ +++R+F + G V L R +IG I L +L G++R LTE EI S++ Sbjct: 181 LTEGKNREIRRLFESQGLTVSRLVRMQIGKIKL-GELRSGKWRMLTEAEIKSLL 233 >UniRef50_C1DA59 Pseudouridine synthase n=6 Tax=Betaproteobacteria RepID=C1DA59_LARHH Length = 703 Score = 256 bits (656), Expect = 4e-67, Method: Composition-based stats. Identities = 67/239 (28%), Positives = 112/239 (46%), Gaps = 9/239 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPL---AQQ 57 MRL K +A SR + RV+++G + ++ P V D P+ Sbjct: 453 MRLQKALALAGLGSRRDMDELVAAGRVSINGAVA-ELGARVRPGDKVRVDSKPVLIRWPD 511 Query: 58 HGPRYFMLNKPQGYVCSTDDPDHPT-VLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQ 116 PR + +K +G + + DDP+ T V L + + K A GRLD++T+GL++ T G Sbjct: 512 RLPRVIVYHKQEGEIVTRDDPEGRTTVFDRLPQTRSSKWVAIGRLDVNTSGLLIFTTSGD 571 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT----PT 172 ++R+T P E+ Y V + + + ++ GVQL + + + Sbjct: 572 LANRMTHPSFEVEREYAVRVLGKLTPEQMKETTAGVQLDDGPASFQFIREDDDKEDSVNH 631 Query: 173 QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 R+ I EGR +V+RMF G V L R R G +TL + L G++ L E E++ ++ Sbjct: 632 WYRVGIREGRNREVRRMFEHFGLTVSRLMRVRFGIVTLPSRLKRGQFYELNELEVSKLM 690 >UniRef50_C6JI84 Pseudouridine synthase n=2 Tax=Fusobacterium RepID=C6JI84_FUSVA Length = 236 Score = 255 bits (654), Expect = 6e-67, Method: Composition-based stats. Identities = 69/236 (29%), Positives = 124/236 (52%), Gaps = 12/236 (5%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQ-QHG 59 MR++K++A SR + I + ++GE K+ + ++ G + + Sbjct: 4 MRINKYLASLGIASRREVDKMIEEGSIKINGEKAT-PGIKVSDKDEIYIRGKKIEKHTEK 62 Query: 60 PRYFMLNKPQGYVCST-DDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y++LNKP + S+ DD TV+ ++ ++ GRLD +T+GL+++T+DG+ Sbjct: 63 KVYYILNKPLEVLSSSKDDRGRKTVVDLIN--CKERIFPIGRLDYNTSGLIILTNDGELF 120 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TPTQV 174 +RI P+ K Y V + + ++ E GV+L + +T PA + ++ T++ Sbjct: 121 NRIIHPKAEIFKEYYVKVLGEIKENNVELLKNGVELDDG--ITLPANVRILRREKGKTEL 178 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + I EGR QV+RM + + V+ L RE+IG ++L +L GEYR LT +EI + Sbjct: 179 LVAIREGRNRQVRRMMDKINHPVITLRREKIGNLSL-GNLKLGEYRELTNDEINYL 233 >UniRef50_Q3B289 Pseudouridine synthase n=2 Tax=Chlorobium/Pelodictyon group RepID=Q3B289_PELLD Length = 250 Score = 255 bits (653), Expect = 7e-67, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 126/234 (53%), Gaps = 7/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQH- 58 +R+++++A SR A + + RVT++G + K++P +V DG+ AQ Sbjct: 13 VRINRYLAMCGIASRRAADQMVLEGRVTINGVLASEPGVKVVPGKDEVIVDGSKFAQPEG 72 Query: 59 GPRYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 Y + NKP+ + ++ D + VL F+D V +++ GRLD TTG++L+T+DG Sbjct: 73 RKIYILFNKPRNVITTSSDERNREMVLDFID--VNERVYPVGRLDRKTTGVLLLTNDGML 130 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP-TQVRL 176 ++++ P + +K Y+ L++P + G++L + + P +++ +QV + Sbjct: 131 ANKLMHPSSNVKKEYIAVLDAPFPQASLPLLTGGMRLSDTGEKVSPCQAKIMGDGSQVWI 190 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +I EG+ HQV+RMF +G V L R G+T DL G++R LT E+ + Sbjct: 191 SIHEGKNHQVRRMFKTLGFEVTRLDRPTYAGLT-VGDLRRGQWRHLTRTEVQQL 243 >UniRef50_C8P160 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P160_ERYRH Length = 262 Score = 255 bits (653), Expect = 7e-67, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 125/234 (53%), Gaps = 8/234 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+K+I+ SR A R I V +DG ++LP V +GN + Sbjct: 26 LRLNKYISDSGYCSRRQADRFIAEGVVAIDGVTAT-VGQQVLPGQRVTVEGNHVTIDDEK 84 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y LNKP+G C+TD + F++ P + GRLD D++GL+L+T+DG ++ Sbjct: 85 VYIALNKPRGITCTTDGAIEGNISDFMNYPKM--IFPIGRLDKDSSGLILLTNDGDIVNK 142 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKD----LTKPAVLEVITPTQVRL 176 I + +K Y+V++ + +D + +KGV+++N++ +T P+ +E + P R+ Sbjct: 143 ILREEYGHDKEYIVSVNKTIDEDFITKMSKGVEIYNQQTHRMQVTNPSDVEQVAPKTFRI 202 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +++G Q++RM A+G V L+R RI I L DL GE+R L+ E+ + Sbjct: 203 VLNQGLNRQIRRMTKALGFKVTTLNRVRIMNINL-GDLKVGEWRYLSVHELEEM 255 >UniRef50_C6HYA4 Pseudouridine synthase n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYA4_9BACT Length = 638 Score = 255 bits (653), Expect = 8e-67, Method: Composition-based stats. Identities = 76/235 (32%), Positives = 119/235 (50%), Gaps = 6/235 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 +RL K +A + SR + + I VTVDGE+V ++ P + DG PL ++ Sbjct: 26 LRLHKILAHRGVASRRKSEQLIAAGSVTVDGEVVTEPGTRVDPKHQVILVDGRPLPREPE 85 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 F+ KP+G V + DP+ L + L GRLD T G +L+T++G S Sbjct: 86 TFLFLFYKPKGVVSTLFDPEGRPTLRDYFPGIDP-LLHIGRLDFQTEGALLLTNNGDLSQ 144 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKG-VQLHNEKDLTKPAVLEVITPT--QVRL 176 RI PR +TYLV ++ ++ E+ A+G ++L + V E T T R+ Sbjct: 145 RILHPRFEIPRTYLVKIQGGMSPAHLERMARGEIRLDGRPVVPLELVPERQTSTNAWYRI 204 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 T++EGR +V+R+F + V++L R G +TL L PGEYR +T E ++ Sbjct: 205 TLTEGRNREVRRLFETLNYFVLKLVRTAFGPLTLAG-LEPGEYRTVTPHETELLL 258 >UniRef50_C7PFL3 Pseudouridine synthase n=3 Tax=Bacteria RepID=C7PFL3_CHIPD Length = 389 Score = 255 bits (653), Expect = 8e-67, Method: Composition-based stats. Identities = 68/228 (29%), Positives = 115/228 (50%), Gaps = 8/228 (3%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPL--AQQHGP 60 L+KFI+ SR A I RV ++ + P V DG+ + A++ Sbjct: 7 LNKFISDTGYCSRREADNLITSGRVLLNDRPA-ALGNRYKPGDTVEVDGSLITAAKKEKR 65 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y LNKP G +T+ ++ F++ P ++ GRLD D+ GL+ +T+DG ++ Sbjct: 66 VYLALNKPPGITTTTELHIKDNIISFVNYP--QRIFPIGRLDKDSEGLIFLTNDGDIINK 123 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 I ++ EK Y+V + P+ + Q ++GV + + T P +++ R+T+++ Sbjct: 124 ILRAANNHEKEYVVRVNKPIDTNFLHQMSQGVPILD--TRTLPCKVQMTGRQTFRITLTQ 181 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 G Q++RM +G VV L R RI + LD L G++R L+E EIA Sbjct: 182 GLNRQIRRMCEYLGYTVVGLQRVRIMNVRLDK-LPLGKWRYLSEAEIA 228 >UniRef50_B8DUD9 Pseudouridine synthase n=8 Tax=Bifidobacterium RepID=B8DUD9_BIFA0 Length = 257 Score = 255 bits (653), Expect = 9e-67, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 115/234 (49%), Gaps = 5/234 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL K +AQ SR I RV VDGE+V ++ P+ V DG+ + Sbjct: 19 IRLQKLLAQAGFGSRRKCEEMITDGRVEVDGELVTELGTRVDPKRQQVRVDGSRIRLNPR 78 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 LNKP+ + + DDP L + ++ GRLD D+ GL+LMT+DG+ S Sbjct: 79 HITLALNKPRKVLSTMDDPKGRYTLRDIVGDKYERIFHMGRLDYDSEGLILMTNDGELSQ 138 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQF-AKGVQLHNEKDLTKPAVL--EVITPTQVRL 176 + P++ EKTY+ TLE ++ + GVQL + + T V++ Sbjct: 139 HVMHPKYEVEKTYIATLEGHMSGTVCRRLVRTGVQLDDGWIKLDHCSIIDSNRDQTIVKV 198 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + GR V+R+F A+G V L R +IG I L D+ G YR L+++E+ ++ Sbjct: 199 VLHSGRNRIVRRIFGAIGFPVKRLVRTQIGPIKL-GDIKSGSYRVLSQDEVRAL 251 >UniRef50_Q2W4E4 Pseudouridine synthase n=20 Tax=cellular organisms RepID=Q2W4E4_MAGSA Length = 247 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 106/232 (45%), Positives = 132/232 (56%), Gaps = 8/232 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL + IA S+ I+ RVT+ V + K D+ DG PL Sbjct: 15 MRLIRLIANLGYGSQRDVKAMIKAGRVTLADGTVLDDGTK-AAHDDIRVDGEPLDPP-PG 72 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK---LHAAGRLDIDTTGLVLMTDDGQW 117 ML+KP+GY CST DP V L E + + GRLD D+TGL+L+TDDG Sbjct: 73 LVLMLHKPEGYTCSTSDP-GRIVYELLPERFMHRNPIVAPVGRLDRDSTGLLLLTDDGPL 131 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKG-VQLHNEKDLTKPAVLEVITPTQVRL 176 +HRITSP+ H KTY VTL P++ + FA G + L +E PA L V P R+ Sbjct: 132 AHRITSPKRHVPKTYEVTLARPLSGEEGAVFASGTLMLRSESTPLAPAELVVSGPQTARI 191 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 TI+EGRYHQVKRMFAAVGNHV LHR IGG+ L DLA G++RPL+ EIA Sbjct: 192 TITEGRYHQVKRMFAAVGNHVERLHRAAIGGLDL-GDLAEGQWRPLSPAEIA 242 >UniRef50_C3X1E1 Pseudouridine synthase n=2 Tax=Oxalobacter formigenes RepID=C3X1E1_OXAFO Length = 510 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 72/235 (30%), Positives = 109/235 (46%), Gaps = 7/235 (2%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG--- 59 L K +A SR I RV+V+GE + ++LP V +G + ++ Sbjct: 176 LHKVLADAGLGSRRDMEELIVAGRVSVNGEPA-HIGQRILPTDQVRLNGKLIQRKIAKSL 234 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 PR +KP G + S DDP+ P+V L K A GRLD +T GL+L T+ G + Sbjct: 235 PRVLTYHKPAGEIVSRDDPEKRPSVFDRLPLLKNSKWLAVGRLDFNTEGLLLFTNSGDLA 294 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT--PTQVRL 176 +R+ PR++ E+ Y V + + ++ GV L + V R+ Sbjct: 295 NRLMHPRYNIEREYAVRTLGELEEGMRQKLLAGVDLGDGIGQFSKIVDGGGEGVNKWYRV 354 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 TI EGR +V+RMF AVG V L R R G + L L G + L E + +++ Sbjct: 355 TIGEGRNREVRRMFEAVGLTVSRLIRTRYGAVVLSQSLKRGRWDELEENAVRNLL 409 >UniRef50_C1DTU8 Pseudouridine synthase n=5 Tax=Bacteria RepID=C1DTU8_SULAA Length = 247 Score = 254 bits (651), Expect = 1e-66, Method: Composition-based stats. Identities = 67/236 (28%), Positives = 122/236 (51%), Gaps = 7/236 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL+K+IA+ SR A I +V V+G+ V+N K+ P+ V +G + Sbjct: 3 RLNKYIAKSGICSRRKADELILEGKVKVNGKTVKNLGLKIDPKKDVVEVEGKIVKPTEKK 62 Query: 61 RYFMLNKPQGYVCSTDDP--DHPTVLYFLDE-PVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 Y + KP GY+ + T+ FL+E + +KL GRLD ++ GL+++T+DG++ Sbjct: 63 IYLAIYKPVGYLSAVGKDRFGRKTLTDFLNELKIPYKLFPVGRLDYNSEGLLILTNDGEF 122 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVR 175 ++++ PR+ +K Y V + V+ +T ++ +G L + + T + Sbjct: 123 ANKVAHPRNEIKKVYKVKVAGEVSQETLKKMEEGTILEDGFFKPDKIKMLKREEDGTWLL 182 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 + I G+ ++R + G+ V L R +IG I + +L P +YR L+E+EI S++ Sbjct: 183 VEIHSGKKRIIRRFMDSFGHRVKRLIRVKIGSIDI-GNLKPFDYRYLSEKEIRSIL 237 >UniRef50_Q83IR6 Ribosomal large subunit pseudouridine synthase F n=90 Tax=Bacteria RepID=RLUF_SHIFL Length = 290 Score = 254 bits (651), Expect = 1e-66, Method: Composition-based stats. Identities = 64/232 (27%), Positives = 113/232 (48%), Gaps = 8/232 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQH-- 58 +RL+K+I++ SR A R I V ++G+ ++ P V +G + + Sbjct: 7 VRLNKYISESGICSRREADRYIEQGNVFLNGKRAT-IGDQVKPGDIVKVNGQLIEPREAE 65 Query: 59 GPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 LNKP G V +T+D + ++ F++ + ++ GRLD D+ GL+ +T+ G Sbjct: 66 DLVLIALNKPVGIVSTTEDGERDNIVDFVNH--SKRVFPIGRLDKDSQGLIFLTNHGDLV 123 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 ++I + EK YLVT++ P+ D+ GV + E P R+T+ Sbjct: 124 NKILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPILGTVTKKCKVKKE--APFVFRITL 181 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +G Q++RM G V +L R RI ++L + GE+R LT++E+ + Sbjct: 182 VQGLNRQIRRMCEHFGYEVKKLERTRIMNVSLSG-IPLGEWRDLTDDELIDL 232 >UniRef50_C6XB83 RNA-binding S4 domain protein n=2 Tax=Methylophilaceae RepID=C6XB83_METSD Length = 455 Score = 254 bits (651), Expect = 1e-66, Method: Composition-based stats. Identities = 72/240 (30%), Positives = 111/240 (46%), Gaps = 18/240 (7%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K +A+ SR A I V V+G++V ++ P+ ++ Q Sbjct: 217 RLSKRMAELGLCSRREADEWIVNGWVRVNGQVVDELGSRVEPDANIEVSKEAEKHQSEIV 276 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAW---------------KLHAAGRLDIDTT 106 +L+KP GYV + + + + W L AGRLDID+T Sbjct: 277 TILLHKPVGYVSGQAEDGYEPAVVLVHPDNHWAEDPVQKEFRRGFLKGLAPAGRLDIDST 336 Query: 107 GLVLMTDDGQWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL 166 GL+++T DG+ + ++ EK YLV +E ++D+ + G+ L + KPA + Sbjct: 337 GLLVLTQDGRVARQLIGEDSQTEKEYLVRVEGTLSDEGLRKLNHGLSLDGVQL--KPAKV 394 Query: 167 EVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 Q+R + EGR Q++RM VG HVV L R RIG + L L PG++R L E Sbjct: 395 SWQNEDQLRFVLREGRKRQIRRMCELVGLHVVGLKRVRIGSVAL-GKLPPGQWRYLRPGE 453 >UniRef50_C7I043 Pseudouridine synthase n=4 Tax=Proteobacteria RepID=C7I043_THIIN Length = 562 Score = 254 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 109/234 (46%), Gaps = 7/234 (2%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP-- 60 L K +AQ SR I RV+V+GE + ++LP + +G + ++ P Sbjct: 174 LHKVLAQSGVGSRREMEDLILAGRVSVNGEPA-HLGQRILPTDQIRVNGKIIKRRLRPAQ 232 Query: 61 -RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 R +KP G V S DP+ PTV L + K A GRLDI+T GL+L T G + Sbjct: 233 ARVLAYHKPTGEVVSFKDPEGRPTVFQHLPKLQGAKWTAVGRLDINTEGLLLFTTSGDLA 292 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLT--KPAVLEVITPTQVRL 176 +R+ P + E+ Y V + + ++ +GVQL + R+ Sbjct: 293 NRLMHPSYGAEREYAVRVLGELDAAARDELLEGVQLGDGPARFLSLEEAGGEGANRWWRV 352 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 ISEGR +V+RMF AVG V L R R + L A L G++ L + + ++ Sbjct: 353 VISEGRNREVRRMFEAVGLTVSRLIRVRYASVVLPAGLRRGDFVELDKSLVQAL 406 >UniRef50_B1KQS3 Pseudouridine synthase n=20 Tax=Gammaproteobacteria RepID=B1KQS3_SHEWM Length = 239 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 100/238 (42%), Positives = 144/238 (60%), Gaps = 10/238 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF+ + ++R A I +V V+GE V + + ++ + + +G Sbjct: 1 MRLDKFLCKSTQLTRHEACELILAGKVLVNGESVVSPSAQVHENNHIRLEGGQRLTARAS 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 RY ML+KP + S D DHP+V F++ +LH AGRLD DTTGL+L+TDDG+WS Sbjct: 61 RYIMLHKPADTLSSNVDGDHPSVFNFINLEHTSELHIAGRLDADTTGLLLITDDGRWSFN 120 Query: 121 ITSPRHHCEKTYLV--------TLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT 172 + +P++HCEK Y V + + + +F +G+ L E+ LT PA LE ++P Sbjct: 121 VFNPKYHCEKVYRVYLRDSIEGEIAGEIDAELKARFKQGLDLQGEQALTLPAKLEFVSPK 180 Query: 173 QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +V LTI+EGRYHQ+KRMFA VGN V LHRE++G I L D+ G++R LT EEI S+ Sbjct: 181 EVLLTITEGRYHQMKRMFARVGNRVNALHREQVGKIKL--DMPVGQWRYLTREEIDSI 236 >UniRef50_Q49YI4 Pseudouridine synthase n=2 Tax=Staphylococcus RepID=Q49YI4_STAS1 Length = 232 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 87/232 (37%), Positives = 130/232 (56%), Gaps = 5/232 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 MRLDKF++ +R + ++ +VT+D ++ + ++ PE V + + Sbjct: 1 MRLDKFLSNMGVGTRTEVKQRLKKKQVTIDDKVETSPKKQINPELEIVKVNDQKIDF-VN 59 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y MLNKP+ Y+ +T D H TVL +++ L GRLD DT GL+L+T+DGQ++H Sbjct: 60 KVYLMLNKPKDYISATTDEQHKTVLDLIEDYRYLDLFPVGRLDKDTEGLLLITNDGQFNH 119 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP-TQVRLTI 178 + SP H KTY V + + + F G++L+ L KPA L + +TI Sbjct: 120 ELMSPGKHVAKTYEVISQKNITKNDINAFKVGIELNEG--LAKPAKLVQGDELNKSFVTI 177 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EGRYHQVKRMF A+ N V+ L R RIG + LD+ LA GEYR LT+++ + Sbjct: 178 YEGRYHQVKRMFHAIDNEVLALKRIRIGDLQLDSTLASGEYRHLTQQDFKLL 229 >UniRef50_C5CXG1 Pseudouridine synthase n=4 Tax=Comamonadaceae RepID=C5CXG1_VARPS Length = 604 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 68/234 (29%), Positives = 110/234 (47%), Gaps = 7/234 (2%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQ---QHG 59 L K +AQ SR I R++V+ E + ++ V +G P+ Sbjct: 200 LHKVLAQAGLGSRLEMEALILQGRISVNNEPA-HIGQRIQYGDQVKINGKPIRYRIAPPP 258 Query: 60 PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 PR +KP G V + DDP PTV L K + GRLD++T GL+L + G + Sbjct: 259 PRVIAYHKPVGEVVTHDDPQNRPTVFRKLPRLQQGKWQSVGRLDLNTEGLLLFSSSGDLA 318 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDL--TKPAVLEVITPTQVRL 176 +++ PR E+ Y V + + + ++ +GV+L + T + R+ Sbjct: 319 NQLMHPRFGLEREYAVRVLGALNAEEKKKLLEGVRLDDGMAQFGTIEEGGGEGSNHWYRV 378 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 TISEGR +V+R+F +VG+ V L R R G + L L G + L E +I+++ Sbjct: 379 TISEGRNREVRRLFESVGHAVSRLIRIRYGAMVLPRGLKRGAWMELDERDISAL 432 >UniRef50_C9RK28 Pseudouridine synthase n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RK28_FIBSS Length = 243 Score = 254 bits (650), Expect = 2e-66, Method: Composition-based stats. Identities = 68/238 (28%), Positives = 111/238 (46%), Gaps = 9/238 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 MR++K+I+ SR A + RV V+GE + + ++ + V DG L Sbjct: 1 MRINKYISLSGFASRRAADELVADGRVQVNGETISDLGHQVDETKDQVTVDGKLLKLPTN 60 Query: 60 PRY--FMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 + M +KP G VC+ DDP +Y P GRLD+ + GL+L TDDG+ Sbjct: 61 KKTKVIMFHKPAGCVCTKDDPQGRRTVYDYLPPGYHNFKYVGRLDLQSRGLLLFTDDGEL 120 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDL-----TKPAVLEVITPT 172 +R+T P ++Y V P+++ A++ GV + + +D A + Sbjct: 121 LYRLTHPSFEVPRSYYVWTTRPLSESAAQRLVDGVDIRDPEDPDAQEEIAFATDVYLENG 180 Query: 173 QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 L + EG+ +++RM A+G + +L R I L DL GE+R LT E+ + Sbjct: 181 FAELVLIEGKNREIRRMMRAIGYEIRDLKRVSYCQIQL-GDLPAGEFRELTPNELNKL 237 >UniRef50_Q3J464 Pseudouridine synthase n=15 Tax=Bacteria RepID=Q3J464_RHOS4 Length = 508 Score = 254 bits (649), Expect = 2e-66, Method: Composition-based stats. Identities = 57/226 (25%), Positives = 104/226 (46%), Gaps = 3/226 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +++ SR A R I R+ V+G + + A + P+ + DG PLA R Sbjct: 9 RIAKVLSRAGIASRRDAERMIELGRIAVNGRTIDSPALNVGPKDRITVDGQPLAPPEPAR 68 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 ++ KP+G V S D ++ ++ + GRLD+++ GL+L+T+DG+ R+ Sbjct: 69 LWLYYKPEGLVTSASDEKGRETVFDHLPEGMPRVMSVGRLDLNSEGLLLLTNDGELKRRL 128 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT--PTQVRLTIS 179 P + Y V ++ D E KG+ + E L+ + + + + Sbjct: 129 ELPSTGWLRKYRVRVKGNPTDADLEPLRKGITVEGESFQPMTVSLDRVQGANAWLTVGLR 188 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEE 225 EG+ +++R +A+G V L R G L+ +L PG + + Sbjct: 189 EGKNREIRRAMSALGLTVNRLIRVSYGPFRLN-ELEPGMVEEVRPK 233 >UniRef50_Q7UUP0 Pseudouridine synthase n=1 Tax=Rhodopirellula baltica RepID=Q7UUP0_RHOBA Length = 395 Score = 254 bits (649), Expect = 2e-66, Method: Composition-based stats. Identities = 67/233 (28%), Positives = 115/233 (49%), Gaps = 8/233 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 R+++ +A SR IR RV VDGE + + P+ V DGN L Q Sbjct: 26 RINQLLASAGFGSRRQCEELIREGRVDVDGETITELGTTVDPDLQKVRVDGNYLRPQ-KL 84 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y+++NKP G V + DP P V+ + ++ GRLDI + GL+L+T+DG + Sbjct: 85 VYYVVNKPVGIVTTNRDPRGRPRVIDLVPP--TERVFPVGRLDISSEGLILLTNDGDLAQ 142 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRLT 177 ++ P+ +K Y V + V +T ++ +G+ + A + T++ + Sbjct: 143 KLAHPKFGIQKVYRVVVAGEVRGETMKKMREGIYIAEGLVQVDGAKIIKARTKATEMEIR 202 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EG+ +++R+ A G+ V +L R IG + L D+ G YR LT +E+ + Sbjct: 203 LKEGKNREIRRILARFGHKVQQLRRVAIGPLKL-GDVPRGAYRKLTRDEVDKL 254 >UniRef50_B1M661 Pseudouridine synthase n=2 Tax=Alphaproteobacteria RepID=B1M661_METRJ Length = 601 Score = 253 bits (648), Expect = 3e-66, Method: Composition-based stats. Identities = 61/218 (27%), Positives = 101/218 (46%), Gaps = 3/218 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A+ SR A I RV+V+GE + + A + + DG P+ + R Sbjct: 87 RIAKAMARAGIASRRDAETMIVAGRVSVNGETLTSPARNVTENDRILIDGEPMPSRERSR 146 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 ++ +KP+G V + DP+ ++ + ++ A GRLDI+T GL+L+T+DG + I Sbjct: 147 LWIFHKPRGVVTTARDPEGRQTVFDVLPEDLPRVVAVGRLDINTEGLLLLTNDGGLAKVI 206 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI--TPTQVRLTIS 179 P + Y V ++ AKGV + + A L+ + + L + Sbjct: 207 AHPDTGWLRRYRVRAHGDTDQAQLDRLAKGVTIDGMEYGPVEATLDRVQGDNVWLTLGLR 266 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPG 217 EG+ +VKR+ +G V L R G L DL G Sbjct: 267 EGKNREVKRILEHLGLSVNRLIRLSFGPFQL-GDLEVG 303 >UniRef50_Q0F269 Pseudouridine synthase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F269_9PROT Length = 289 Score = 253 bits (648), Expect = 3e-66, Method: Composition-based stats. Identities = 66/233 (28%), Positives = 109/233 (46%), Gaps = 5/233 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+++++A SR A R I+ RV+++G+++ + V D + Q G Sbjct: 44 RINRYLAHCGLCSRREADRWIQAGRVSINGQLIEAPGVIVKSGDTVMVDDKLVEPQQGHT 103 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y + NKP+G +CS D ++Y VA + + GRLD+DT GL+++TDDG + + Sbjct: 104 YILYNKPKGQLCSRLDKKKRPLIYDF-IDVAPNVQSIGRLDMDTEGLLMLTDDGALTRAL 162 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL----EVITPTQVRLT 177 T P + Y + V +T + +G D + + E T + + Sbjct: 163 THPAAKVPREYRARVAGIVELETLAKLRRGGMDIGRGDTSDAWEVTVDSESAGHTWLNII 222 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I GR+ +V+R G+ V L R R G I LD D+ G +R L EI + Sbjct: 223 ILRGRWREVRRTLEECGHPVRRLMRTRFGPIKLDEDMPKGTWRALNRGEIRKL 275 >UniRef50_B0MSS4 Pseudouridine synthase n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MSS4_9BACT Length = 451 Score = 253 bits (647), Expect = 4e-66, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 122/231 (52%), Gaps = 3/231 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL++FIAQ SR A I+ VTV+G +V K+ P +V ++ + + Sbjct: 217 IRLNRFIAQSGICSRREADDFIQAGLVTVNGVVVTTLGTKVQPTDEVKFNDSRVEG-EKK 275 Query: 61 RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+GYV S DDP TV+ + + +++ GRLD ++ GL+L T+DG + Sbjct: 276 VYLVLNKPKGYVTSLDDPHADKTVMELVKDACTERIYPVGRLDKNSVGLLLFTNDGDLTR 335 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 ++T P +K Y V+L+ P+ EQ A+G+ L + + T+V + I Sbjct: 336 QLTHPSFQKKKIYQVSLDKPLTKADMEQIAQGITLEDGEIYADEIAYVKEDKTEVGIEIH 395 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR V+R+F +G V +L R G++ +L G++R LT EE+ + Sbjct: 396 SGRNRIVRRIFEHLGYAVKKLDRVYYAGLS-KKNLKRGQWRFLTREEVQRL 445 >UniRef50_Q21MN5 Pseudouridine synthase n=6 Tax=Bacteria RepID=Q21MN5_SACD2 Length = 324 Score = 253 bits (647), Expect = 4e-66, Method: Composition-based stats. Identities = 69/234 (29%), Positives = 118/234 (50%), Gaps = 10/234 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQ---- 56 +RL+KFI+ SR A + I +RV ++G ++ + V D PL Sbjct: 7 VRLNKFISDSGHCSRREADKLIASDRVKING-LLPELGAVVESGDVVTVDDQPLRASAAD 65 Query: 57 QHGPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQ 116 + Y NKP G C+TD ++ +D ++ GRLD + GL+L+T DG Sbjct: 66 KTDRIYIAYNKPFGITCTTDQTVKGNIVDAIDHD--ERIFPIGRLDKPSEGLILLTSDGD 123 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRL 176 ++I + +K Y+VT+ +A + AE+ ++G+ + +TKP + VI T ++ Sbjct: 124 IVNKILRAENAHDKEYIVTVNKNLAPNFAEKMSRGLPILG--TITKPCKVRVIGKTTFKI 181 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +++G Q++RM +G V +L R RI I L L PG++R LT+ E+ + Sbjct: 182 ILTQGLNRQIRRMCDYLGYDVKQLVRTRIMNIEL-GKLKPGQWRRLTKVELDLL 234 >UniRef50_C0EB54 Pseudouridine synthase n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EB54_9CLOT Length = 248 Score = 252 bits (645), Expect = 6e-66, Method: Composition-based stats. Identities = 94/235 (40%), Positives = 136/235 (57%), Gaps = 7/235 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 +R+DKF++ Q +R+ A +R RV V+G V+ A K+ P ++ DG + Sbjct: 3 IRIDKFLSTQAIATRSQAKEMLRAGRVLVNGTPVKAADLKVDPEGDEIRVDGR-VYGYQE 61 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWS 118 Y MLNKPQG V +TDD H TVL + + + L AGRLD DT G VL+TDDG+++ Sbjct: 62 HLYLMLNKPQGVVSATDDKVHRTVLDLVPPELRRRGLFPAGRLDRDTVGFVLITDDGEFA 121 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ---VR 175 H I SPRHH KTY L+ P+ ++ A+GV L + +PA L V+ + ++ Sbjct: 122 HNILSPRHHVPKTYEAGLDGPIGENELSVLAQGVVLGDG-TKCRPAELTVLQSGERPLIQ 180 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + I EGRYHQ+KRMFAAVG V+ L R +IGG+ LD L G+ ++ + + Sbjct: 181 IVIVEGRYHQIKRMFAAVGRRVLTLKRTKIGGLALDPSLKEGDCIAISPSNLEKI 235 >UniRef50_A6GNL7 Pseudouridine synthase n=2 Tax=Betaproteobacteria RepID=A6GNL7_9BURK Length = 458 Score = 252 bits (644), Expect = 9e-66, Method: Composition-based stats. Identities = 65/230 (28%), Positives = 105/230 (45%), Gaps = 7/230 (3%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQ---HG 59 L K +A SR I RV+V+ E + ++LP V +G + ++ Sbjct: 71 LHKVLADSGMGSRREMEELIVAGRVSVNAEPA-HLGQRVLPTDQVRVNGKLIQRKNKSKP 129 Query: 60 PRYFMLNKPQGYVCSTDDPDHPT-VLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 PR + +KP G + S DDP T V L + K A GRLD +T GL+L T G+ + Sbjct: 130 PRVLIYHKPAGEIVSMDDPQGRTTVFQKLPKISNGKWIAVGRLDFNTEGLLLFTSSGELA 189 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKP--AVLEVITPTQVRL 176 +R+ PR+ ++ Y V + ++++ +Q G+QL + A ++ Sbjct: 190 NRLMHPRYEVQREYAVRILGELSEEQRQQLLTGIQLEDGPAKFLYVDAAGGEGANRWYKV 249 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEE 226 + EGR +V+RMF A V L R R G I + + L G + + E Sbjct: 250 GLKEGRNREVRRMFEACNLTVSRLIRTRFGDIMMPSTLKRGRHMEMEALE 299 >UniRef50_A5TWE7 Pseudouridine synthase n=10 Tax=Fusobacterium RepID=A5TWE7_FUSNP Length = 234 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 71/237 (29%), Positives = 117/237 (49%), Gaps = 13/237 (5%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLA--QQH 58 MR++KF++ SR + I R+TV+G + ++ DG + Sbjct: 1 MRINKFLSTLGIASRRAIDKYIEEGRITVNGNTATT-GMDINENDNIFIDGKKIKTSINE 59 Query: 59 GPRYFMLNKPQGYVCSTDD-PDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 YFMLNKP + S+ D TV+ + ++ GRLD T+GL+L+T+DG+ Sbjct: 60 EKVYFMLNKPLEVLSSSSDDRGRKTVVDLI--KTDKRIFPIGRLDYMTSGLILLTNDGEL 117 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TPTQ 173 +R+ P+ K Y + + + + ++ KGV L + K T PA + I T Sbjct: 118 FNRVVHPKSEIYKKYYIKILGELKKEEIDELKKGVLLDDGK--TLPAKISGIKYDKNKTS 175 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + ++I EGR Q++RM V+ L RE+IG + L DL G+YR LT++E+ + Sbjct: 176 MFISIREGRNRQIRRMIEKFEYKVLMLRREKIGELAL-GDLPEGKYRELTKQEVEYL 231 >UniRef50_B0SBU8 Pseudouridine synthase n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SBU8_LEPBA Length = 243 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 81/233 (34%), Positives = 120/233 (51%), Gaps = 6/233 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RLDK + +R+ +EI V V+G +V++ +K+ V Y L ++ Sbjct: 5 RLDKVLGNYGFGTRSDVKKEIYQGNVKVNGLVVKDPGYKITLTDIVVYYDETLNRKE-FY 63 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAW-KLHAAGRLDIDTTGLVLMTDDGQWSHR 120 YFM+NK + +T+DP TV+ +L E L GRLD +T GL+L T DG +H Sbjct: 64 YFMMNKAPDCITATEDPREKTVMDYLSERHRNMNLFPIGRLDKETEGLLLFTTDGTLAHY 123 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT--- 177 TSP+H EK Y + +PV QF G+ L + T PA L + P+ + Sbjct: 124 YTSPKHFVEKEYYAEISAPVTAFDISQFESGITLDDG-YKTLPARLAIPDPSNPHIATVW 182 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EG+Y Q++RMF ++G V L R ++G + LD DL G YR LTE E + Sbjct: 183 LREGKYRQIRRMFQSLGKEVQYLKRVKMGNLELDRDLEVGSYRELTEAEEKIL 235 >UniRef50_Q15Q67 Pseudouridine synthase n=2 Tax=Bacteria RepID=Q15Q67_PSEA6 Length = 241 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 90/221 (40%), Positives = 130/221 (58%), Gaps = 6/221 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RLD+ ++ SR A ++G RVTV GE ++ A K+ P V DG L Sbjct: 15 RLDQLLSNLGYCSRKEARYLLKGKRVTVKGEFAKSPALKVDP-ATVRVDGEALDAP-DGI 72 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK---LHAAGRLDIDTTGLVLMTDDGQWS 118 MLNKP GYVCS D+ + + L E ++ + + GRLD DT+GL+L+TDD + Sbjct: 73 LVMLNKPLGYVCSHDNNEGMRIYDLLPERWEFRNPKIVSVGRLDKDTSGLILVTDDTKLV 132 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 H++TSP+HH +K Y V+++ P+ D + FAKGV L + PA +E+++ +T+ Sbjct: 133 HQLTSPKHHVDKVYQVSVDCPLQSDIIDSFAKGVVLGEGAEQCLPAKIEIVSENVANVTL 192 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEY 219 +EG+YHQV+RMFAA G HV LHR + G L DLA GE+ Sbjct: 193 NEGKYHQVRRMFAACGYHVEALHRSQFGQYRLQ-DLAQGEW 232 >UniRef50_A8U325 Pseudouridine synthase n=1 Tax=alpha proteobacterium BAL199 RepID=A8U325_9PROT Length = 387 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 58/223 (26%), Positives = 104/223 (46%), Gaps = 3/223 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A+ SR A R I RV VDG ++ + A + + + D PL + PR Sbjct: 10 RISKRLARAGLCSRRDAERWIAEGRVKVDGVMLTSPAVNVDDDSVILVDEKPLPEIEPPR 69 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 + +KP G V S DP+ + ++ ++ GRLDID+ GL+L+T+DG + + Sbjct: 70 LWRYHKPDGLVTSNRDPEGRSTVFDRLPKDLPRVVTVGRLDIDSEGLLLLTNDGGLARYL 129 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI--TPTQVRLTIS 179 P + Y V + P+ + + KGV++ + ++ T + + + + Sbjct: 130 ELPSTGWVRRYRVRVFGPLDEAKLDNLKKGVRIEGVEYGPIEVTIDKATRTNSWLTVALR 189 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPL 222 EG+ +++R+ VG V L R G L ++ PG + Sbjct: 190 EGKNREIRRVMEHVGLTVSRLIRTTYGPFQL-GEVPPGGVEEI 231 >UniRef50_Q04F57 Pseudouridine synthase n=2 Tax=Oenococcus oeni RepID=Q04F57_OENOB Length = 237 Score = 251 bits (643), Expect = 1e-65, Method: Composition-based stats. Identities = 72/234 (30%), Positives = 131/234 (55%), Gaps = 9/234 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K IAQ SR A I +V V+G+I+ K+ + V D + + Sbjct: 6 RLQKRIAQAGVASRRKAEEMIVNGQVKVNGKIITKLGKKVSSDDIVYVDNKKIN-EESFE 64 Query: 62 YFMLNKPQGYVCSTDD-PDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y++LNKP GYV S P+ P+V+ + ++ + GRLD DTTG++L+T+DG+ + + Sbjct: 65 YYLLNKPAGYVSSNRSYPNQPSVIELI--KTKTRIFSVGRLDQDTTGVLLLTNDGELTQK 122 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT----PTQVRL 176 +T P+H ++TY ++ V +D EQ K ++ E + A + + + + + Sbjct: 123 LTHPKHRIKRTYAAWVKGIVNEDEIEQLTKPIRFDGEIYFPQAARILKVDQKRQESLIEI 182 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 TI+EG+ H++K++ +G+ V++L+R+ GIT+ +L G++R L+E+E+ + Sbjct: 183 TIAEGKNHEIKKILDFIGHPVIKLNRDMFDGITI-GNLKKGQHRALSEQEVEKI 235 >UniRef50_Q0G3T3 Pseudouridine synthase n=4 Tax=Alphaproteobacteria RepID=Q0G3T3_9RHIZ Length = 639 Score = 251 bits (642), Expect = 1e-65, Method: Composition-based stats. Identities = 62/224 (27%), Positives = 103/224 (45%), Gaps = 3/224 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR+ + +A+ SR A I RV V+G+I+ + A + P + DG L Q Sbjct: 184 MRIARRLARAGIASRRDAEAMIVDGRVKVNGKIIDSPALDVKPTDRIEVDGALLPQAERT 243 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 R ++ +KP G V + DP+ ++ + ++ + GRLDI+T GL+L+T+DG S Sbjct: 244 RLWLFHKPAGTVTTNKDPEGRRTVFDMLPEDMPRVLSIGRLDINTEGLLLLTNDGGLSRV 303 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT--I 178 + P + Y V + ++ G+ + A L+ + V +T + Sbjct: 304 LELPSTGWLRRYRVRAHGSITQAKLDELRNGISVDGVFYGAIEATLDREQGSNVWITLGL 363 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPL 222 EG+ +VK + A+G V L R G L DLA G R + Sbjct: 364 REGKNREVKNVLGALGLEVNRLIRLSYGPFQL-GDLAEGSVREV 406 >UniRef50_D0LG91 Pseudouridine synthase n=3 Tax=Bacteria RepID=D0LG91_HALO1 Length = 553 Score = 251 bits (642), Expect = 1e-65, Method: Composition-based stats. Identities = 72/236 (30%), Positives = 126/236 (53%), Gaps = 9/236 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL ++++Q +R A I V+V+G+ V K++P V+ G + Sbjct: 5 IRLQRYLSQCGVAARRKAEELITSGVVSVNGQRVTELGTKVVPGRDRVSVRGEAV-YPEE 63 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 P Y +LNKP+G + + DP++ + + ++ GRLD + G++L+T+DG S Sbjct: 64 PFYVLLNKPKGCLTAVTDPENRPTVMEYLHGLPARVVPVGRLDFYSEGVLLLTNDGDLSA 123 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT-----QV 174 R+ SPRHH EKTY V + V + E +GV+L + +T+PA ++++ T + Sbjct: 124 RLQSPRHHVEKTYHVKVRDQVTERHLEVLRQGVRLEDG-TVTRPAQIDMLGGTKSRHDWL 182 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +T++EG+ Q+ RM +G V++L R GG+T L G+ R LT+ E+ + Sbjct: 183 VITLTEGKSRQIHRMLGVLGYTVMKLQRVAFGGLTFHG-LRVGDARELTQAEVNDL 237 >UniRef50_A6WK95 Pseudouridine synthase n=12 Tax=Gammaproteobacteria RepID=A6WK95_SHEB8 Length = 256 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 93/229 (40%), Positives = 133/229 (58%), Gaps = 1/229 (0%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RLD+++ QL R + RV VDG IV++ ++ + D + Q + P Sbjct: 28 RLDRYLCTQLHTHRKAVRELLLSGRVRVDGLIVKDMDRQVDEFSHIQLD-EHILQANAPV 86 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y ML+KP G V +T D H TV+ LD +LH AGRLD++++GL+L+T+D +WS + Sbjct: 87 YVMLHKPIGVVSATKDIQHKTVIDLLDCEARDELHIAGRLDLNSSGLLLLTNDSRWSDAL 146 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEG 181 SP H +K Y VTL +P+ ++ FA+G+ E T+PA L ++ +T+ EG Sbjct: 147 MSPTHKVDKVYRVTLANPITEEYIAAFAEGMYFGFEDITTQPAKLVILADNVAEVTLHEG 206 Query: 182 RYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +YHQ+KRMF N VV LHR IG I LD LAPGE R LT E+AS+ Sbjct: 207 KYHQIKRMFGRFRNPVVGLHRLSIGDIVLDEKLAPGESRALTAAEVASI 255 >UniRef50_B6R892 Pseudouridine synthase n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R892_9RHOB Length = 681 Score = 251 bits (642), Expect = 2e-65, Method: Composition-based stats. Identities = 62/223 (27%), Positives = 100/223 (44%), Gaps = 3/223 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A+ SR A I RV+V+G ++ AF + + V DG PL + R Sbjct: 38 RIAKAMARAGLCSRREAETWIEAGRVSVNGNVLDTPAFTVTQKDKVYVDGKPLPTRERTR 97 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 ++ +KP+G V + DP+ ++ + ++ GRLDI+T GL+L+T+DG S I Sbjct: 98 LWLFHKPRGTVTTNKDPEGRKTVFDILPKDMPRVVTVGRLDINTEGLLLLTNDGGLSRVI 157 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRLTIS 179 P + Y V V + + GV + A L E + + + Sbjct: 158 ELPATGWLRRYRVRAFGKVTQEQLDALKDGVAIDGVLYGAIEATLDTEKGDNVWLTIGLR 217 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPL 222 EG+ +VKR+ + V L R G L DL GE + + Sbjct: 218 EGKNREVKRILEHLDLSVNRLIRISFGPFQL-GDLGEGELQEI 259 >UniRef50_B0T1Z8 Pseudouridine synthase n=1 Tax=Caulobacter sp. K31 RepID=B0T1Z8_CAUSK Length = 501 Score = 250 bits (640), Expect = 2e-65, Method: Composition-based stats. Identities = 57/237 (24%), Positives = 103/237 (43%), Gaps = 8/237 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A+ SR R I RV ++GE++ A K+ P + DG + + R Sbjct: 25 RVAKMLARAGVASRRAVERLIEDGRVALNGEVLTTPAIKVRPGDILTVDGKMIDEPEATR 84 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 F +KP G + + +DP ++ +L + GRLD+++ GL+L+T+DG S + Sbjct: 85 VFRYHKPSGLMTTHNDPKQRPTVFQALPRDLPRLISVGRLDLNSEGLLLLTNDGALSRAL 144 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT-------QV 174 P++ + Y ++ G + + A L+ + Sbjct: 145 EMPQNAWVRRYRARAFGDTTQAKLDKLKDGCTVEGVRYGPIEARLDKAQEKAGGGKNIWI 204 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 LT+SEG+ +V+R+ ++G V L R G L L PG+ + I ++ Sbjct: 205 TLTLSEGKNREVRRVLESIGLKVNRLIRLSYGPFAL-GTLLPGQVEEVGPRVIRELL 260 >UniRef50_C7NDY8 Pseudouridine synthase n=5 Tax=Fusobacteriaceae RepID=C7NDY8_LEPBD Length = 228 Score = 250 bits (640), Expect = 3e-65, Method: Composition-based stats. Identities = 74/231 (32%), Positives = 119/231 (51%), Gaps = 7/231 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL+KFIA+ SR A I RVTV+ + + PE V DG + Sbjct: 1 MRLNKFIAETGFCSRRKADELINEGRVTVN-KHEAIIGMDVKPEDVVRIDGERVKLNTRY 59 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y++LNKP+ +CS +D + F+ +L GRLD T GL+++++DG+ + Sbjct: 60 EYYILNKPKRVLCSNEDKFGRRLAVDFI--KSRARLFTYGRLDFMTEGLIIISNDGEVYN 117 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 + PR K+Y+ + + D E GV + ++ T PA ++ I ++R+ I Sbjct: 118 HVMHPRKKLYKSYIAKVSREIEDKDIEALQHGVVIDGKR--TAPAKVKKIDKKELRIAIF 175 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EGR Q+++M +G +V L R ++G +TL +L GEYR L E+EI + Sbjct: 176 EGRNRQIRKMLETLGYNVNSLKRIKVGELTL-GNLQVGEYRALNEDEIKYL 225 >UniRef50_Q9HZ55 Ribosomal large subunit pseudouridine synthase B n=67 Tax=Gammaproteobacteria RepID=RLUB_PSEAE Length = 386 Score = 250 bits (640), Expect = 3e-65, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 109/236 (46%), Gaps = 9/236 (3%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG--- 59 L K +A+ SR I RV V+G + + ++ + DG+ + ++ Sbjct: 16 LQKVLARLGVGSRRDVEVWIAEGRVNVNGSVA-SLGQRVDSHDAITVDGHLIRREEAAES 74 Query: 60 -PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 R + NKP+G VC+ DDP+ PT+ L + GRLDI+TTGL+L T DG+ Sbjct: 75 VRRVLIYNKPEGEVCTRDDPEGRPTIFDRLPRLRTGRWINVGRLDINTTGLLLFTTDGEL 134 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT---PTQV 174 ++R+ P + ++ Y V + V ++ E+ GV L + Sbjct: 135 ANRLMHPSYEMDREYAVRVRGEVTEEMIERLLNGVMLEDGPAKFSDIQQAPGGEGFNHWY 194 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EGR +V+R++ + G V L R R G + L ++L G YR + + EI + Sbjct: 195 HCVVMEGRNREVRRLWESQGLVVSRLKRVRFGPVFLTSELTMGRYREMDQREIDIL 250 >UniRef50_Q1LJQ9 Pseudouridine synthase n=3 Tax=Burkholderiales RepID=Q1LJQ9_RALME Length = 238 Score = 250 bits (640), Expect = 3e-65, Method: Composition-based stats. Identities = 93/230 (40%), Positives = 123/230 (53%), Gaps = 3/230 (1%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLL-PEHDVAYDGNPLAQQHGPR 61 LD+ + Q +R G + V V+GE+ + + + DG Sbjct: 5 LDRILQSQGFGTRRYCGDLVAAGLVEVNGELCEDPGARFEVDGLRLMVDGEE-WLACTKA 63 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y MLNKP GY CS HP+V L P+ + + A GRLD DTTGL+L+TDDGQ+ H Sbjct: 64 YVMLNKPTGYECSQRPRHHPSVYNLLPVPLRQREVQAVGRLDHDTTGLLLLTDDGQFIHA 123 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 TSP+ K Y VT PV + E GV+L +E E +RLT+ + Sbjct: 124 QTSPKKQVPKIYEVTTFDPVTPEQVEALRTGVKLDDEPAPIAADACEATGERSLRLTLLQ 183 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G+YHQVKRM AAVGNHV LHR IGG+ LD L PGE+R LT E++A++ Sbjct: 184 GKYHQVKRMVAAVGNHVTALHRSAIGGLVLDPALGPGEWRWLTPEDLAAL 233 >UniRef50_Q1J0B9 Pseudouridine synthase n=5 Tax=Deinococci RepID=Q1J0B9_DEIGD Length = 253 Score = 250 bits (639), Expect = 4e-65, Method: Composition-based stats. Identities = 76/232 (32%), Positives = 109/232 (46%), Gaps = 9/232 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLA-QQHGP 60 RL K +A+ SR A I RVTV+G+I ++P+ +V DG + Sbjct: 7 RLQKRLARAGVASRRAAEDLITAGRVTVNGQIAT-LGRTVMPDDEVRVDGRLIEAPAQES 65 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 F+L KP GYV + D VL + LH GRLD D+ GL+L+T DGQ + Sbjct: 66 VTFLLYKPAGYVTTARDEYGRRNVLSAMPP--IPGLHPVGRLDKDSEGLLLLTTDGQLTL 123 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 +T PR+ EK Y G++L + A +T++ Sbjct: 124 TLTHPRYGHEKAYRAWTAGQPVAAELRVLETGIELADGPARALSARPARGG---ALVTLT 180 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 EGR QV+RM A+G V L R R+GG+ L DL PGEYR L+ ++ ++ Sbjct: 181 EGRNRQVRRMLDAIGYPVHRLLRYRVGGLWL-GDLEPGEYRLLSPRDLHDLL 231 >UniRef50_B0S303 Pseudouridine synthase n=2 Tax=Finegoldia magna RepID=B0S303_FINM2 Length = 235 Score = 249 bits (638), Expect = 5e-65, Method: Composition-based stats. Identities = 86/230 (37%), Positives = 136/230 (59%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLD+ +++ +R + ++ +TV+ V+ ++ + +DV + + + Sbjct: 1 MRLDRMLSEMKIATRKEIKQMVKKGIITVNDVTVKKSSEHIDENNDVVKIYDEVIEYRKF 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 YF++NK +G + DP H TV+ + E + L+ GRLD+DTTGL+++T+DG+++H Sbjct: 61 LYFVMNKRKGVTSHSKDPMHKTVIDDMGELCVFDLNPVGRLDLDTTGLLIITNDGKFAHN 120 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 + SP+ K Y VTL V + + F KG++L E +TKPA +E+I LTI E Sbjct: 121 LISPKKDVSKKYKVTLRDKVDEKYNDTFEKGIKLMPEDIVTKPAKMEIIDDYNCYLTIKE 180 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G+YHQVKRMF VGN VVEL R +IG L DL G++R LT+EE+ + Sbjct: 181 GKYHQVKRMFEKVGNEVVELQRVQIGDFKLPEDLEEGDFRELTDEELRIL 230 >UniRef50_A3JIZ1 Pseudouridine synthase n=1 Tax=Marinobacter sp. ELB17 RepID=A3JIZ1_9ALTE Length = 367 Score = 249 bits (638), Expect = 5e-65, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 105/236 (44%), Gaps = 8/236 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG-- 59 R+ K +A+ SR + R+ V+G+ V K DG L Sbjct: 58 RIQKLLARAGVGSRREIEGWMDAGRLLVNGKPVT-PGQKATVSDVFELDGKRLEVAAAAE 116 Query: 60 --PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQ 116 R + NKP+G V + DP+ PTV L + + GRLD++TTGLV+ T DG+ Sbjct: 117 VLRRVLIYNKPEGEVTTRKDPEGRPTVFDRLPRLREHRWISIGRLDLNTTGLVMFTTDGE 176 Query: 117 WSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT--PTQV 174 ++R+ P ++ Y V + V D E+ GV L + + T Sbjct: 177 LANRLMHPSSEIDREYAVRIFGEVDDAMIERLRTGVTLEDGEAKFSDISAAGGTGMNRWF 236 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +T+ EGR +V+R++ + G V L R R G I L + L G++ L ++ + + Sbjct: 237 HVTLLEGRNREVRRLWESQGVRVSRLKRVRYGSIFLPSRLTVGKWEELDQKAVDLL 292 >UniRef50_Q1H048 Pseudouridine synthase n=4 Tax=Betaproteobacteria RepID=Q1H048_METFK Length = 383 Score = 249 bits (637), Expect = 5e-65, Method: Composition-based stats. Identities = 62/236 (26%), Positives = 107/236 (45%), Gaps = 7/236 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLA---QQH 58 RL K +A SR I R+T++G+ ++P V D PL + Sbjct: 30 RLHKLLALAGFGSRREMETLIASGRITINGKTA-EVGASVVPSDVVRLDSRPLRLPFEPE 88 Query: 59 GPRYFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 P+ + +KP+G + S DDP++ +V L K A GRLD++T+GL++ T G+ Sbjct: 89 LPQVLLYHKPEGEIVSHDDPENRASVFDKLPRIRNGKWIAIGRLDMNTSGLLIFTTSGEL 148 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLE--VITPTQVR 175 ++R PR+ E+ Y V + + + Q G++L + + Sbjct: 149 ANRFMHPRYEVEREYAVRIFGELTEGEMAQLTYGIELDDGPANFDSIRPQGGEGANHWYE 208 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 + + EGR +V+R+F A V L R R G + L L G+ L +E+ +++ Sbjct: 209 VILREGRNREVRRLFEAFQKPVSRLIRVRFGPVNLPPRLKRGQMIHLGAKEVTALL 264 >UniRef50_A1UU09 Pseudouridine synthase n=4 Tax=Bartonella RepID=A1UU09_BARBK Length = 499 Score = 249 bits (637), Expect = 6e-65, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 3/223 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A+ SR A I R+ V+G +V ++P + D P+ R Sbjct: 46 RIAKRLARAGIASRRDAEMMIIAGRIAVNGTVVTTPVLNVIPSDHITVDEIPIPPIERTR 105 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 ++ +KP G V + DP+ ++ ++ + GRLDI+T GL+L+T+DG + + Sbjct: 106 LWLYHKPSGLVTTNRDPEGRPTVFDNLPKEMPRVVSVGRLDINTEGLLLLTNDGGLARVL 165 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRLTIS 179 P + Y V + ++ G+ + + A + E + + + + Sbjct: 166 ELPLTGWVRKYRVRAHGKIKQSELDKLKNGIAIDGIFYGSIDASIDREQGSNVWLSVALR 225 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPL 222 EG+ ++K A+G V L R G L DL G R L Sbjct: 226 EGKNREIKNFLGALGLSVNRLIRVSYGPFQLS-DLEEGAVREL 267 >UniRef50_A8U4V7 Pseudouridine synthase n=10 Tax=Lactobacillales RepID=A8U4V7_9LACT Length = 239 Score = 249 bits (637), Expect = 6e-65, Method: Composition-based stats. Identities = 79/236 (33%), Positives = 126/236 (53%), Gaps = 8/236 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 MRLDK + + SR R ++ +V V+G+ + + + P+ +V G P+ Sbjct: 1 MRLDKLLFETGFGSRRTVKRLLKSKQVQVNGQTIMVDSLNVDPQLQEVTVAGVPID-YQP 59 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVA-WKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y+ML+KP G V + D + TV+ ++ L GRLD DT GL+L+T++GQ Sbjct: 60 HVYYMLHKPAGVVSAVSDAVNQTVIDLIEPSQRVPGLFPVGRLDKDTEGLLLLTNNGQLG 119 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT----PTQV 174 +++ P+ K Y V + V DD F G+ + KPA L +++ ++V Sbjct: 120 YQLLIPKKEVTKCYEVVVNERVTDDDQLAFTAGIVFDGG-VICKPAQLTILSQSDTESRV 178 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 L ISEG++HQVK+MF +VG V+ L R +G + LD L+ G YRPL EE+ ++ Sbjct: 179 LLEISEGKFHQVKKMFLSVGKKVIYLKRLSMGPLQLDKTLSLGSYRPLHAEELVAL 234 >UniRef50_P45104 Ribosomal large subunit pseudouridine synthase B n=177 Tax=Gammaproteobacteria RepID=RLUB_HAEIN Length = 357 Score = 249 bits (636), Expect = 7e-65, Method: Composition-based stats. Identities = 70/237 (29%), Positives = 106/237 (44%), Gaps = 10/237 (4%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFK--LLPEHDVAYDGNPLA----Q 56 L K +A+ SR I RV+V+G+I + + V DG + Q Sbjct: 78 LQKVLARAGQGSRREIETMIAAGRVSVEGKIAT-LGDRIDVHSGVKVRIDGQIINLSHTQ 136 Query: 57 QHGPRYFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDG 115 + R M KP+G +C+ DP+ TV L + A GRLDI+T+GL+L T DG Sbjct: 137 KEICRVLMYYKPEGELCTRSDPEGRATVFDRLPRLTGSRWIAVGRLDINTSGLLLFTTDG 196 Query: 116 QWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLE--VITPTQ 173 + ++R+ P E+ Y V + V D + KGVQL + K V Sbjct: 197 ELANRLMHPSREVEREYSVRVFGQVDDAMLARLRKGVQLEDGLANFKEIKFTGGVGINQW 256 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +T+ EGR +V+R++ + G V L R R G I L L G + + E + + Sbjct: 257 YDVTLMEGRNREVRRLWESQGIQVSRLIRIRYGNIKLMKGLPRGGWEEMDLENVNYL 313 >UniRef50_C6BUF1 RNA-binding S4 domain protein n=1 Tax=Desulfovibrio salexigens DSM 2638 RepID=C6BUF1_DESAD Length = 251 Score = 249 bits (636), Expect = 8e-65, Method: Composition-based stats. Identities = 66/239 (27%), Positives = 117/239 (48%), Gaps = 10/239 (4%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLP-EHDVAYDGNPLAQQHG 59 +RL+K+IA SR A ++ +V V+GE+ + ++ P V +G + Sbjct: 7 IRLNKYIASAGIASRRGADELVQKGKVKVNGELADSPGIQVDPDNDRVEVNGKLVQHDEK 66 Query: 60 --PRYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPV-AWKLHAAGRLDIDTTGLVLMTDDG 115 Y +L+K V + DP TVL L V ++ GRLD + G++L+T DG Sbjct: 67 SKDLYILLHKTIETVTTAKDPQGRKTVLDLLPPDVINRRVFPVGRLDFYSEGMLLLTTDG 126 Query: 116 QWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP---- 171 + +R+T P+ H K Y VT+ +++ G+ L ++ +L P ++ I+ Sbjct: 127 ELCNRMTHPKWHLPKIYHVTIRGKLSEKELSVMQNGMYLEDKGELLAPVKIKAISEVGET 186 Query: 172 TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 T+ + + +G Q++RMF ++ L R R G I L L PG++R L+ +E+ + Sbjct: 187 TKYEMELRQGINRQIRRMFGEFDKTILRLKRVRQGRIEL-GALKPGKWRELSAKELTLL 244 >UniRef50_C7H5G4 Pseudouridine synthase n=8 Tax=Clostridiales RepID=C7H5G4_9FIRM Length = 294 Score = 249 bits (636), Expect = 8e-65, Method: Composition-based stats. Identities = 76/236 (32%), Positives = 117/236 (49%), Gaps = 10/236 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDV-AYDGNPL--AQQH 58 R+ K +A+Q SR A + I RV V+G V+ K+ P DV D + + Sbjct: 22 RIQKIMAEQGLCSRRAAEQIIAEGRVKVNGHPVK-VGDKMDPNRDVLHVDDERIYIQKNQ 80 Query: 59 GPRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y L KP+GYV + D + L + +L+ GRLD D+ GL+LMT+DG ++ Sbjct: 81 QLYYLALYKPRGYVTTASDELGRKTVMELVSDIPARLYPVGRLDKDSEGLLLMTNDGAFA 140 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP----TQV 174 +T P K Y VT++ + + + GV L + T P + V+T T + Sbjct: 141 QAVTHPSGGISKLYRVTVQPRADESQILKMSSGVVLDDG-TKTMPCAINVVTDEPGRTVM 199 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +T+ EG+ +++RM AVG VV L R G + L L PG YR LT+ E++ + Sbjct: 200 EMTLKEGKNREIRRMCEAVGLEVVRLKRNAEGVVKL-GMLKPGTYRELTKAEVSGL 254 >UniRef50_B2TQQ1 Pseudouridine synthase n=8 Tax=Clostridium RepID=B2TQQ1_CLOBB Length = 264 Score = 248 bits (635), Expect = 9e-65, Method: Composition-based stats. Identities = 91/254 (35%), Positives = 131/254 (51%), Gaps = 26/254 (10%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 MRLDKF+A+ R I I+ V V+GEI+ + + + DV Y + G Sbjct: 1 MRLDKFLAESAVGRRKIVRTYIKDGMVKVNGEIITEPSIDINEKLDDVEYLEKKVVH-TG 59 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y+M NKP G + +T D H TV + DE + + GRLD DT GL+L+T+DG++ H Sbjct: 60 KVYYMFNKPSGCITATKDNIHRTVFDYFDEDMN-GVFHVGRLDKDTEGLLLLTNDGEFEH 118 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQV----- 174 ++ P H EKTY + D+ +Q +GV + + + LTKPA +++ Sbjct: 119 KVMHPEKHVEKTYFFWALGSLDDEDKKQLQEGVFIGSNEALTKPAKIDIHKSGSYIEFKE 178 Query: 175 ------------------RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAP 216 LTISEG+ HQVKRM AVG +V+ L R IGG+ LD L Sbjct: 179 EIPINSLKNKDHQPVVSGYLTISEGQKHQVKRMLKAVGCYVIYLKRISIGGLKLDESLKM 238 Query: 217 GEYRPLTEEEIASV 230 G+YR LT++EI + Sbjct: 239 GDYRDLTKKEIKRI 252 >UniRef50_Q8Z1V3 Ribosomal large subunit pseudouridine synthase F n=235 Tax=Bacteria RepID=RLUF_SALTI Length = 289 Score = 248 bits (635), Expect = 9e-65, Method: Composition-based stats. Identities = 63/231 (27%), Positives = 112/231 (48%), Gaps = 8/231 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQH--G 59 RL+K+I++ SR A R I V ++G+ +++ V +G + + Sbjct: 8 RLNKYISESGICSRREADRFIEQGNVFINGKRA-AIGDQVVAGDVVKVNGRLIEPREADD 66 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 LNKP G V +T+D + ++ F++ + ++ GRLD D+ GL+ +T+ G + Sbjct: 67 LVLIALNKPVGIVSTTEDGERDNIVDFVNH--SKRIFPIGRLDKDSQGLIFLTNHGDLVN 124 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 +I + EK YLVT++ P+ D+ GV + E P R+T+ Sbjct: 125 KILRAGNDHEKEYLVTVDKPITDEFIRGMGAGVPILGTVTKKCKVKKE--APFVFRITLV 182 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +G Q++RM G V +L R RI ++L + GE+R LT++E+ + Sbjct: 183 QGLNRQIRRMCEYFGYEVTKLERTRIMNVSLSG-IPLGEWRDLTDDELIDL 232 >UniRef50_C8WBY9 Pseudouridine synthase n=3 Tax=Zymomonas mobilis RepID=C8WBY9_ZYMMN Length = 509 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 60/230 (26%), Positives = 98/230 (42%), Gaps = 3/230 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +++ SR + I R+ +DG V A L V DG P+ R Sbjct: 272 RIAKLLSRAGIASRRMIEAMIEEGRIAIDGVTVEKPATLLTSLDGVTVDGKPVNAPTETR 331 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 F+ +K G + + DP+ +Y ++ GRLD++T GL+L+T DG + + Sbjct: 332 LFLYHKATGLLTTERDPEGRKTIYDRLPADLPRVMPVGRLDMNTEGLLLLTTDGGFKRML 391 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEV--ITPTQVRLTIS 179 P H E+ Y + V+ D E+ +GV + + A LE V + + Sbjct: 392 ELPATHIERCYRARVFGDVSQDQLEELIEGVTIDGIHYGSIDANLERRTGRNGWVEMKLH 451 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 EGR +V+R+ +G V L R G L DL G + + + Sbjct: 452 EGRNREVRRVLGYLGLQVSRLIRISYGPF-LLGDLPVGAVEEVDPATLKA 500 >UniRef50_D0SB72 Pseudouridine synthase n=5 Tax=Acinetobacter RepID=D0SB72_ACIJO Length = 368 Score = 248 bits (635), Expect = 1e-64, Method: Composition-based stats. Identities = 65/236 (27%), Positives = 111/236 (47%), Gaps = 10/236 (4%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNP----LAQQH 58 L K +A+ SR I RV+V+G++ ++ P ++ DG + + Sbjct: 5 LQKVLARVGLGSRRYMEEVIAAGRVSVNGQVA-QVGERIEPGDELRIDGRKVSFQIEDEI 63 Query: 59 GPRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 R + KP+G +CS +DP+ PTV L + GRLDI++TGL+L T+DG+ Sbjct: 64 RRRVLIYYKPEGEICSRNDPESRPTVFDQLPAIANDRWVMVGRLDINSTGLLLFTNDGEL 123 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT---PTQV 174 ++R+ P + E+ Y V + V KGV L + + E+ Sbjct: 124 ANRLMHPSNEVEREYAVRVMGEVTPQIKNNMLKGVVLDDGPAKFESFS-EIGGEGINRWY 182 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 ++ + EGR +V+R+F + G V L R R G + L +L G + L + +I ++ Sbjct: 183 QVVVKEGRNREVRRIFESQGLKVSRLLRTRYGTVILPRELRTGRWMELDKNDIDNL 238 >UniRef50_Q01Z61 Pseudouridine synthase n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01Z61_SOLUE Length = 264 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 77/233 (33%), Positives = 130/233 (55%), Gaps = 9/233 (3%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGPR 61 L++ ++ SR A + I G +V V+G++V N + P+ V +G PL Sbjct: 16 LERVFSKAGAGSRTDARKWISGGKVRVNGKVVLNPDHWVDPDHDKVTLEGKPLKAAT-KS 74 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y +L KP+GY+ + DP+ +Y L V L GRLD+DT+GL+++T+D ++ RI Sbjct: 75 YILLYKPKGYLTTYRDPEGRPTVYALLGDVGKWLSPVGRLDLDTSGLLVLTNDNDFAERI 134 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP----TQVRLT 177 T+P H KTY + + ++D+ E+ GV+L + T+PA ++ + T + +T Sbjct: 135 TNPEHKVPKTYQIKAATVLSDEQIERLRAGVELSDGP--TRPAEVKRLRDGPKHTFLEMT 192 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I+EGR QV+RM AV + V +L R IG + + +L G++R LT +E+ + Sbjct: 193 ITEGRNRQVRRMLEAVESKVSKLVRTAIGPVRI-GELPIGKWRNLTADEVHEL 244 >UniRef50_B2IHU4 Pseudouridine synthase n=1 Tax=Beijerinckia indica subsp. indica ATCC 9039 RepID=B2IHU4_BEII9 Length = 528 Score = 248 bits (634), Expect = 1e-64, Method: Composition-based stats. Identities = 63/223 (28%), Positives = 102/223 (45%), Gaps = 6/223 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A+ SR A I RV+V+G ++ + E + DG LA + R Sbjct: 91 RIAKVMARAGLCSRRDAEAWIAEGRVSVNGTVLTQPGVSVSDEDVILVDGEKLAARGHTR 150 Query: 62 YFMLNKPQGYVCSTDDPD-HPTVLYFL--DEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 F+ +KP+G V + DP+ PTV +L P ++ + GRLDI+T GL+L+T+DG S Sbjct: 151 LFLFHKPRGLVTTNHDPEGRPTVFDYLHERHPDMPRVLSIGRLDINTEGLLLLTNDGGLS 210 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRL 176 + P + Y V + +Q +G+ + E + + L Sbjct: 211 RLLELPTTGWVRRYRVRAKGTTDQAVLDQLRQGITIDGIHYAGMEVTFDREQGANSWLTL 270 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEY 219 ++ EG+ +VKR+ +G V L R G L DL G+ Sbjct: 271 SLREGKNREVKRVLEQIGLEVNRLIRLSFGPFQL-GDLPEGDV 312 >UniRef50_Q55578 Uncharacterized RNA pseudouridine synthase slr0361 n=21 Tax=Cyanobacteria RepID=Y361_SYNY3 Length = 249 Score = 247 bits (633), Expect = 2e-64, Method: Composition-based stats. Identities = 85/242 (35%), Positives = 136/242 (56%), Gaps = 16/242 (6%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 R+ K ++Q SR A I RV+V+G++ N K P+ D ++ DG + + P Sbjct: 4 RIQKLLSQWGIASRRHAEEMILAGRVSVNGKVA-NLGDKADPQQDFLSVDGKQIKADNRP 62 Query: 61 R--YFMLNKPQGYVCSTDDP-DHPTVLYFLDEPV--AWKLHAAGRLDIDTTGLVLMTDDG 115 R Y ++NKP+ + + DDP TVL L + + LH GRLD ++TG +L+T+DG Sbjct: 63 RDIYLLVNKPRDVLSTCDDPRGRKTVLDLLPQDLQRGKGLHPVGRLDRNSTGALLLTNDG 122 Query: 116 QWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQ-- 173 + + R+T PR+H KTY V LE +D+ E++ G+ L +K T PA LEVI+ + Sbjct: 123 ELTLRLTHPRYHLPKTYDVWLEGNPSDEDLEKWRSGMMLDGKK--TLPATLEVISENKDQ 180 Query: 174 --VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLD---ADLAPGEYRPLTEEEIA 228 + +T++EGR Q++R+ +G V++LHR IG + L L G++R L+ EI Sbjct: 181 IHLLVTLTEGRNRQIRRLAEELGLTVLKLHRRTIGPLQLHTRGKVLGSGQFRFLSPAEIR 240 Query: 229 SV 230 + Sbjct: 241 LL 242 >UniRef50_C0BLA3 Pseudouridine synthase n=1 Tax=Flavobacteria bacterium MS024-3C RepID=C0BLA3_9BACT Length = 334 Score = 247 bits (632), Expect = 2e-64, Method: Composition-based stats. Identities = 65/232 (28%), Positives = 113/232 (48%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+++I+ SR A I + V+G+ V +K+ V++DG + Sbjct: 101 IRLNRYISNSGVCSRREADIFIAAGSIKVNGKAVVEMGYKVALSDVVSFDG-VVLNPEKR 159 Query: 61 RYFMLNKPQGYVCSTDD-PDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP+ + S D + L + K+ GRLD +GL+L T+DG+ Sbjct: 160 AYILLNKPKDFDSSATDASQPKSALGLVANATKSKIKPVGRLDKSASGLLLFTNDGELQT 219 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAV-LEVITPTQVRLTI 178 ++T P++ K Y TL + D E+ KG+ L + +E T+V + I Sbjct: 220 KLTKPKNGFRKIYHATLSKSLKADDLEKVRKGIVLEDGPVRVHEISNIEGSPATEVGIEI 279 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + + +KR+F +G +++L R G+T DL G++R LTE+EI ++ Sbjct: 280 LSAKNNIIKRLFDHLGYELIKLDRVVYAGLT-KKDLPRGQWRTLTEQEIINL 330 >UniRef50_A5ZYR1 Pseudouridine synthase n=2 Tax=Clostridiales RepID=A5ZYR1_9FIRM Length = 315 Score = 247 bits (632), Expect = 2e-64, Method: Composition-based stats. Identities = 63/230 (27%), Positives = 113/230 (49%), Gaps = 5/230 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +R++K+++ SR A + RVTV G+ + ++ + +V DG P+ + Sbjct: 13 IRINKYLSAAGVCSRREADQLTDAGRVTVAGKEIGT-GERIPADAEVFLDGRPVKAETRQ 71 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 + KP+G VCST T + + +++ GRLD D+ GL+L+T+ G +R Sbjct: 72 VLLLFYKPRGIVCSTKKQRQETTVTEFLD-YPVRVYPVGRLDKDSEGLLLLTNQGDLVNR 130 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 I ++ EK Y VT++ + + + + GV + +T+P + + +++ Sbjct: 131 IMRAGNYHEKEYEVTVDKKITETFIRKMSSGVPILG--TVTRPCTVYKTGDKSFSIILTQ 188 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G Q++RM +G HV L R RI +TLD L GEYR + +E + Sbjct: 189 GLNRQIRRMCEYLGYHVCTLKRIRIMNLTLDG-LKCGEYREICGDEWKKL 237 >UniRef50_A7HC79 Pseudouridine synthase n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7HC79_ANADF Length = 354 Score = 247 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 76/233 (32%), Positives = 115/233 (49%), Gaps = 4/233 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL K++A+ SR A I RV V+ V K+ P V DG +++ Sbjct: 12 VRLQKYLAEAGVASRRKAEELILAGRVKVNARAVTVLGSKVDPARDLVTVDGRLVSRSET 71 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y++L KP G V + DP+ V ++ + GRLD D G VL TDDG+ ++ Sbjct: 72 RSYYLLYKPPGCVTTASDPEGRPTALEYLRGVKERVFSVGRLDFDAEGAVLFTDDGELAN 131 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRLT 177 R+ PR+ +TYLV + E+ GV+L + AV +R+ Sbjct: 132 RLAHPRYGHRRTYLVKVRGEPPPAALERLVAGVRLEDGPARALEAVPHERAERNVWIRVV 191 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EGR+H VKR+ AVG V L+R GGIT++ L PG++RPL E+ ++ Sbjct: 192 VGEGRFHLVKRLCEAVGLQVQRLYRPEFGGITVEG-LRPGQFRPLAPVEVRAL 243 >UniRef50_A0NV51 Pseudouridine synthase n=2 Tax=cellular organisms RepID=A0NV51_9RHOB Length = 520 Score = 247 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 100/223 (44%), Gaps = 3/223 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A+ SR A I RV ++G+++ A + P+ V DG PL + R Sbjct: 104 RIAKVMARVGLCSRREAEVWIENGRVELNGKLLTTPAVTVTPDDKVVVDGQPLPMRERTR 163 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 ++ +KP+G V + DP+ ++ ++ GRLDI+T GL+L+T+DG + + Sbjct: 164 LWLYHKPRGLVTTNKDPEGRPTVFERLPDDLPRVLTVGRLDINTEGLLLLTNDGGLARVL 223 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT--IS 179 P + Y V V + G+ + A L+ V +T + Sbjct: 224 ELPATGWLRRYRVRAFGKVTQPDLDTLKDGIAIEGVLYGAIEATLDKEQGNNVWMTVGLR 283 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPL 222 EG+ +VKR+ +G V L R G L DL G+ R + Sbjct: 284 EGKNREVKRVLEHLGLAVNRLIRLSYGPFQLM-DLPEGDVREI 325 >UniRef50_A9MDW0 Pseudouridine synthase n=43 Tax=Rhizobiales RepID=A9MDW0_BRUC2 Length = 611 Score = 247 bits (631), Expect = 3e-64, Method: Composition-based stats. Identities = 60/223 (26%), Positives = 101/223 (45%), Gaps = 3/223 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A+ SR A I R+ V+G+++ + A + + DG PL Q R Sbjct: 105 RIAKRLARAGIASRREAETMIATGRIAVNGKVLESPAVNVKRTDIITVDGKPLRQTERTR 164 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 ++ +KP G V + DP+ ++ P ++ + GRLDI+T GL+L+T+DG S + Sbjct: 165 LWLYHKPAGLVTTNRDPEGRPTVFEALPPEMPRVLSVGRLDINTEGLLLLTNDGGLSRVL 224 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT--PTQVRLTIS 179 P + Y V V ++ G+ + + A LE + + + + Sbjct: 225 ELPSTGWLRRYRVRAHGKVTQQQLDELKNGIAVDGVFYGSVEAELERVQGANVWISIGLR 284 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPL 222 EG+ +VK + A+G V L R G L DL G R + Sbjct: 285 EGKNREVKNILGALGLTVGRLIRVSFGPFQL-GDLEEGAVREI 326 >UniRef50_C7NBL1 Pseudouridine synthase n=3 Tax=Leptotrichia RepID=C7NBL1_LEPBD Length = 252 Score = 246 bits (630), Expect = 4e-64, Method: Composition-based stats. Identities = 86/251 (34%), Positives = 135/251 (53%), Gaps = 22/251 (8%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF+A +R ++ +V+V+ V++ + E D+ N + Sbjct: 1 MRLDKFLANSGIGTRKEVKEILKNKKVSVNNVFVKDGKIHVDEEKDIVKYENKIINYKPF 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVA-WKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y M+NKP G + +T+D H TV+ L++ + + GRLDIDT GL+L+T+DG SH Sbjct: 61 VYIMMNKPAGVISATEDSHHKTVIDLLNDEYRTYDIFPVGRLDIDTEGLILLTNDGILSH 120 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT------- 172 + SP+ H +K Y V + +++D + G++L E +TK A +E+I Sbjct: 121 NLLSPKKHVDKKYYVKITKSLSEDDIKTLENGIKLE-ENFITKNAKVEIICNNSEKESED 179 Query: 173 -------------QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEY 219 V +TISEG++HQVKRMF AVGN V+ L R ++G + LD +L G Y Sbjct: 180 FDFGENENNKNENSVYITISEGKFHQVKRMFKAVGNEVLYLKRVKMGNLLLDENLELGGY 239 Query: 220 RPLTEEEIASV 230 R LT++E+ + Sbjct: 240 RELTQKELNGL 250 >UniRef50_Q3MC44 Pseudouridine synthase n=21 Tax=Cyanobacteria RepID=Q3MC44_ANAVT Length = 288 Score = 246 bits (629), Expect = 5e-64, Method: Composition-based stats. Identities = 79/243 (32%), Positives = 125/243 (51%), Gaps = 17/243 (6%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RL K +AQ SR A IR +RV ++G + K+ PE + DG ++ Q Sbjct: 30 RLQKVLAQWGIASRREAEEMIRRSRVQINGTLA-ELGQKVNPERDIITVDGKSVSAQRHH 88 Query: 61 R--YFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWK--LHAAGRLDIDTTGLVLMTDDG 115 R Y +LNKP G V + DP TVL L E + LH GRLD +TG +++T+DG Sbjct: 89 RLTYLLLNKPTGVVSTCYDPQGRKTVLDLLPEELRKGSGLHPVGRLDAYSTGALILTNDG 148 Query: 116 QWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI----TP 171 + ++T P H+ KTY + ++ + + + +GV L K T+ A + ++ Sbjct: 149 DLTFKLTHPSHNIPKTYQILVKGHPPEAVLKMWREGVLLDGRK--TRKAKVSLLESLAEK 206 Query: 172 TQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDAD----LAPGEYRPLTEEEI 227 +++ + + EGR Q++R+ +G V++LHR IG I L L G YR L ++EI Sbjct: 207 SRLEIVLQEGRNRQIRRVAEQLGYPVIKLHRTAIGSIQLQTSKQPLLRAGNYRILRDDEI 266 Query: 228 ASV 230 S+ Sbjct: 267 RSL 269 >UniRef50_UPI0001BC42E2 ribosomal small subunit pseudouridine synthase A n=3 Tax=Fusobacterium RepID=UPI0001BC42E2 Length = 235 Score = 246 bits (629), Expect = 5e-64, Method: Composition-based stats. Identities = 83/230 (36%), Positives = 127/230 (55%), Gaps = 4/230 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR+DKF+ + SR ++ ++ V+G + + + E D Y G Sbjct: 1 MRIDKFLVECGVGSRKEVKELLKSRKIRVNGLFITSPKENIEEEKDEVYYGEKKLSYQEF 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWSH 119 RY++L+K GYV + +D TV+ L E V K L GRLD DT GL+L T+DG+ +H Sbjct: 61 RYYILHKKAGYVTALEDSREATVMDLLPEWVIKKDLAPVGRLDKDTEGLLLFTNDGKLNH 120 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 R+ SP+ H +KTY +LE + ++ E+ +GV + + T PA E + ++ LTI Sbjct: 121 RLLSPKSHVDKTYHASLECDITEEALEKLREGVMI--GEYKTLPAKAEKLEDRKIALTIR 178 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 EG++HQVK+M AVGN V+ L R G + L DL GE + ++ E+I S Sbjct: 179 EGKFHQVKKMLEAVGNKVIYLKRISFGKLVL-GDLELGEVKEVSLEDIIS 227 >UniRef50_Q5F8V3 Pseudouridine synthase n=21 Tax=Proteobacteria RepID=Q5F8V3_NEIG1 Length = 350 Score = 246 bits (629), Expect = 5e-64, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 103/237 (43%), Gaps = 8/237 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQ---H 58 RL K +A SR I VTV+G+ K+ P+ V G+ + + Sbjct: 99 RLQKVLAASGVGSRREMEEWINNGWVTVNGKTA-QLGDKVTPDDHVTVKGSIIKLKWADR 157 Query: 59 GPRYFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 PR + K +G + S DDP ++ L + + + A GRLDI+T+GL+++T G+ Sbjct: 158 LPRIILYYKQEGEIVSRDDPQGRVSIFDRLPQAASSRWVAIGRLDINTSGLLILTTSGEL 217 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQF-AKGVQLHNEKDLTKPAVLE--VITPTQV 174 R P E+ Y V + + + +GV L + + + Sbjct: 218 VQRFAHPSFEVEREYAVRVLGGLTTEQMRSLTEEGVMLEDGLAKVERIYEQGGEGANKWY 277 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 + I EGR +V+R+F + G V L R G I L L G++ L E+A+++ Sbjct: 278 NIVIKEGRNREVRRIFESQGLTVSRLVRVAFGPIGLPNRLKRGQFYELNPAEVANIL 334 >UniRef50_B7L142 Pseudouridine synthase n=9 Tax=Alphaproteobacteria RepID=B7L142_METC4 Length = 674 Score = 245 bits (628), Expect = 6e-64, Method: Composition-based stats. Identities = 61/218 (27%), Positives = 100/218 (45%), Gaps = 3/218 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K IA+ SR A I RVT++G+++ + A + + D PL + R Sbjct: 23 RIAKAIARAGIASRRDAEALIEAGRVTLNGKVLTSPAINVTDSDRITVDDEPLPARERTR 82 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 ++L+KP+G V + DP+ ++ ++ A GRLDI+T GL+L+T+DG + I Sbjct: 83 LWLLHKPRGVVTTARDPEGRPTVFDGLPEELPRVVAIGRLDINTEGLLLLTNDGGLAKVI 142 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEV--ITPTQVRLTIS 179 P + Y V V ++ KG+ + + A L+ + L + Sbjct: 143 AHPDTGWLRRYRVRAFGDVTQPDLDKLKKGLTVDGMEYGPIEATLDRAQGDNVWLTLGLR 202 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPG 217 EG+ +VKR+ +G V L R G L DL G Sbjct: 203 EGKNREVKRILEHLGLSVNRLIRLSFGPFQL-GDLEVG 239 >UniRef50_Q13BM8 Pseudouridine synthase n=55 Tax=Alphaproteobacteria RepID=Q13BM8_RHOPS Length = 795 Score = 245 bits (628), Expect = 7e-64, Method: Composition-based stats. Identities = 59/223 (26%), Positives = 100/223 (44%), Gaps = 3/223 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A+ SR A I RV V+G ++ + A + + DG PL ++ R Sbjct: 477 RIAKVVARAGLCSRRDAEAWIVEGRVAVNGRVIDSPALDVTYSDVITVDGKPLPERERTR 536 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 F+ +KP+G + + DP+ ++ +L + GRLD +T GL+L+T+DG + + Sbjct: 537 LFLYHKPRGLMTTHADPEGRPTVFDNLPEDLPRLISIGRLDFNTEGLLLLTNDGGLARAL 596 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEV--ITPTQVRLTIS 179 P + Y V V +Q A GV++ K A LE + I Sbjct: 597 ELPETGWLRRYRVRAHGEVTQAQLDQLASGVEVDGVKYGPIEAKLERDQGANVWLVFAIR 656 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPL 222 EG+ +V+ + A +G V L R G L ++ G+ + Sbjct: 657 EGKNREVRNVLAHLGLEVNRLIRVSYGPFQLL-EIEEGQVEEV 698 >UniRef50_B4RA72 Pseudouridine synthase n=4 Tax=Caulobacteraceae RepID=B4RA72_PHEZH Length = 521 Score = 245 bits (627), Expect = 8e-64, Method: Composition-based stats. Identities = 55/234 (23%), Positives = 98/234 (41%), Gaps = 7/234 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A+ SR R I RV ++G+++ A K+ P + DG + + R Sbjct: 152 RIAKLLARSGVGSRRDVERLIAEGRVAINGQVLTTPAVKVEPGDILTVDGAVVGEPEPVR 211 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 F +KP G V + DP ++ +L + GRLD+++ GL+L+T+DG + + Sbjct: 212 VFRYHKPVGLVTTHKDPQGRPTVFEALPEGLPRLISVGRLDLNSEGLLLLTNDGGLARAL 271 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEV------ITPTQVR 175 P + Y + + + G+ + + A L+ + Sbjct: 272 ELPATGVVRRYRARAHGRITQERLDTLKDGITVEGVRYGAIEARLDKAKEGHQGANLWLT 331 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 +T+ EG+ +V+R+ A+G V L R G L L GE + I Sbjct: 332 VTLQEGKNREVRRVLEALGLKVNRLIRLSYGPFAL-GTLDVGEIEEVGPRVIRE 384 >UniRef50_B4RM91 Pseudouridine synthase n=8 Tax=Betaproteobacteria RepID=B4RM91_NEIG2 Length = 416 Score = 245 bits (627), Expect = 8e-64, Method: Composition-based stats. Identities = 62/237 (26%), Positives = 103/237 (43%), Gaps = 8/237 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQ---H 58 RL K +A SR I VTV+G+ K+ P+ V G+ + + Sbjct: 165 RLQKVLAASGVGSRREMEEWINNGWVTVNGKTA-QLGDKVTPDDHVTVKGSIIKLKWADR 223 Query: 59 GPRYFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 PR + K +G + S DDP ++ L + + + A GRLDI+T+GL+++T G+ Sbjct: 224 LPRIILYYKQEGEIVSRDDPQGRVSIFDRLPQAASSRWVAIGRLDINTSGLLILTTSGEL 283 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQF-AKGVQLHNEKDLTKPAVLE--VITPTQV 174 R P E+ Y V + + + +GV L + + + Sbjct: 284 VQRFAHPSFEVEREYAVRVLGGLTTEQMRSLTEEGVMLEDGLAKVERIYEQGGEGANKWY 343 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 + I EGR +V+R+F + G V L R G I L L G++ L E+A+++ Sbjct: 344 NIVIKEGRNREVRRIFESQGLTVSRLVRVAFGPIGLPNRLKRGQFYELNPAEVANIL 400 >UniRef50_Q1Q1Q0 Pseudouridine synthase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q1Q0_9BACT Length = 260 Score = 245 bits (627), Expect = 9e-64, Method: Composition-based stats. Identities = 73/234 (31%), Positives = 123/234 (52%), Gaps = 9/234 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAY-DGNPLAQQHGP 60 RL K +A SR I RVTVDGE V + V Y DG P+ + Sbjct: 4 RLQKVLASAGIGSRRECENVILAGRVTVDGERVTALGATVDAGKSVIYCDGMPI-RPEAK 62 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y++LNKP+ +C+ D + + + V +L+ GRLD + GL+++T+DG+ S++ Sbjct: 63 IYYLLNKPKDCLCTNYDELNRLRAIDIIKNVKQRLYTIGRLDKQSEGLIIITNDGELSNK 122 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEV----ITPTQVRL 176 ++ P++ KTY + ++ ++++T GV L K T+P ++ ++ + Sbjct: 123 LSHPKYEVNKTYFIEIDGYLSNETITALQSGVWLAFGK--TQPVRIKKMHRSFKKSRFEM 180 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EG+ +++RM A G+ V L R +IG + D DL G+YR LTE+EI S+ Sbjct: 181 ILCEGKNREIRRMLADHGHKVRTLRRIKIGSLC-DPDLKVGKYRKLTEQEIKSL 233 >UniRef50_Q0AS26 Pseudouridine synthase n=1 Tax=Maricaulis maris MCS10 RepID=Q0AS26_MARMM Length = 372 Score = 245 bits (627), Expect = 9e-64, Method: Composition-based stats. Identities = 57/219 (26%), Positives = 96/219 (43%), Gaps = 3/219 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ KF+A+ SR R I G RV VDG+ + AFK+ + DG + + Sbjct: 10 RIAKFLARAGVASRREVERMIEGGRVKVDGKTLDTPAFKVTGSEHIEVDGKRIEPPAATK 69 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 + +KP G V + DP+ ++ ++ + GRLD+ + GL+L+T+DG + + Sbjct: 70 LWRYHKPDGLVTTHADPEGRETVFDAIPKDIGRVISIGRLDLTSEGLLLLTNDGALARAL 129 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT--QVRLTIS 179 P + Y +++ + GV + K +E T + + + I Sbjct: 130 ELPSTGWTRRYRARAFGSISESALKILRAGVTVEGIKYGPMEVEVERETGSNIWLEVGIR 189 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGE 218 EG+ +V++ AVG V L R G L L GE Sbjct: 190 EGKNREVRKALDAVGLRVNRLIRIAYGPFQL-GQLEKGE 227 >UniRef50_Q31GA0 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=Q31GA0_THICR Length = 317 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 63/239 (26%), Positives = 116/239 (48%), Gaps = 11/239 (4%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQ----QH 58 L K +A+ SR + I V V+G++ + P + + + + + Sbjct: 20 LQKILARGGFGSRREVEKLISQGLVKVNGKVAT-LGDRAFPTDTLKVNDQLVKETRLEKQ 78 Query: 59 GPRYFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 + + NKP+G VCS D T+ L + + + GRLDI+T+GL+++T++G+ Sbjct: 79 PTQVILYNKPEGQVCSRKDEKGRETIFTSLPRIINSRWISVGRLDINTSGLLILTNNGEL 138 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTK-----PAVLEVITPT 172 ++R+ P + E+ Y V + V+D+ ++ KGV+L + + P E Sbjct: 139 ANRLMHPSYEMEREYSVRVFGEVSDEILDRLKKGVKLEDGFAKFESIGKIPQQEEDSINQ 198 Query: 173 QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 R+ I EGR +V+R++ + G V L R R G +L +L G+ PLT ++I ++ Sbjct: 199 WYRVVIKEGRNREVRRIWESQGVQVSRLVRTRYGQFSLPRNLRRGKSEPLTWKQINQLL 257 >UniRef50_C8P302 Pseudouridine synthase n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P302_ERYRH Length = 229 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 95/229 (41%), Positives = 132/229 (57%), Gaps = 5/229 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLL-PEHDVAYDGNPLAQQHG 59 MRLDKF+A +R ++ VTV+ ++VR+A L + +V G ++ Q Sbjct: 1 MRLDKFLAHNGFGTRKDVKILVKKGMVTVNHDVVRDAGMVLNLEKDEVFVKGESVSYQKD 60 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 YFM+NKP GY+C + +P+VL + E L GRLD DT GL+L+T+DGQ+SH Sbjct: 61 -IYFMMNKPAGYICEHNPEMYPSVLELI-ESYHRDLVFVGRLDADTEGLLLITNDGQFSH 118 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 R+ + + K Y V L+ P E+ KG+ L +E L KPA +EV+ + LTI Sbjct: 119 RVAHSKSNVHKQYYVELDKPFDLRFCEELEKGMMLGDE--LLKPAQVEVVGERAIHLTIG 176 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIA 228 EG+YHQVKRM A N V L R +IG + LD+ L PG YR L+EEEI Sbjct: 177 EGKYHQVKRMMHACDNEVTYLKRIKIGALELDSSLQPGAYRDLSEEEIN 225 >UniRef50_A9NFY3 Pseudouridine synthase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NFY3_ACHLI Length = 236 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 74/234 (31%), Positives = 117/234 (50%), Gaps = 8/234 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL+ +I++ SR A I R+ V+G ++ V D N + Sbjct: 1 MRLNLYISKTGVASRRGADSLIEHGRIKVNGVTA-VLGMQITKNDVVTLDNNIIEPLEEK 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +LNKP G V +T+ ++ F++ K+ GRLD D+ GL+L+T+DG ++ Sbjct: 60 FYILLNKPVGIVSTTNTAISGNMITFMN--FKEKIFPVGRLDKDSHGLILLTNDGSIVNK 117 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHN----EKDLTKPAVLEVITPTQVRL 176 I + +K Y VTL P D E GV+++N EK +T P++L+ + L Sbjct: 118 ILRVENGHDKEYHVTLNKPYDDYFIETMTSGVEIYNPVAHEKQMTMPSILKPLDERTFSL 177 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 TI +G Q++RM ++G V L R RI +TL DL G +R LT +E+ + Sbjct: 178 TIRQGLNRQIRRMADSLGYRVESLERVRIMHLTL-GDLPVGYWRYLTSDELKEL 230 >UniRef50_C2KPR0 Pseudouridine synthase n=3 Tax=Mobiluncus RepID=C2KPR0_9ACTO Length = 278 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 66/232 (28%), Positives = 110/232 (47%), Gaps = 3/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL K ++Q SR + I+ RV VDGE V K+LP + +G + Sbjct: 42 VRLQKLLSQAGVASRRASEDLIKRGRVQVDGETVTEMGLKVLPSARITVNGQRIHTDAAL 101 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 + + NKP G V + D L + ++ GRLD+ T GL+L+T++G ++R Sbjct: 102 QVWAFNKPVGTVSTMQPEDDRPCLGDWATKLPQRVFHVGRLDVATAGLILLTNNGDLANR 161 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL--EVITPTQVRLTI 178 + PR+ KTY+ ++ V + +GV+L + L + V+LT+ Sbjct: 162 LVHPRYEVPKTYVAMVQGQVKPGLGKVLRRGVELEDGVTKVDTFKLVEVRRGSSIVQLTL 221 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G+ V+R+ + VG+ V L R IG + L DL G +R LT ++ + Sbjct: 222 HSGKNRVVRRLLSEVGHPVSALTRTAIGTLRL-GDLKEGHFRLLTGSDLVKL 272 >UniRef50_Q5SLZ5 Pseudouridine synthase n=4 Tax=Bacteria RepID=Q5SLZ5_THET8 Length = 243 Score = 245 bits (626), Expect = 1e-63, Method: Composition-based stats. Identities = 90/230 (39%), Positives = 125/230 (54%), Gaps = 7/230 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RLDK +A+ SR R +R +V V G++V++ F++ + +G PL + Sbjct: 5 RLDKVLARLGLGSRKEVARLVRQGKVRVLGQVVKDPGFRVPEGAALEVEGRPLEVR-RHL 63 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 + +L+KP G+V S + P+V L L GRLD D GL+L T DG HR+ Sbjct: 64 HVLLHKPPGFVTSRT--EGPSVYALLQGFPTRDLSPVGRLDKDAEGLLLFTTDGLLLHRL 121 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVI-TPTQVRLTISE 180 T PRH K YLV LE PV E F +G+ L +K T PA L + PT + + E Sbjct: 122 THPRHKVAKRYLVHLERPVGPKDQEAFREGILLDGKK--TLPAELTPLEDPTWAEVVLKE 179 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 GR+HQ+KRMF A GN V+ L R +G + L DL PG+ RPLTE E ++ Sbjct: 180 GRFHQIKRMFRARGNRVLRLKRLALGPLEL-GDLPPGKARPLTEAEEKAL 228 >UniRef50_A8SIK9 Pseudouridine synthase n=1 Tax=Parvimonas micra ATCC 33270 RepID=A8SIK9_9FIRM Length = 235 Score = 244 bits (625), Expect = 1e-63, Method: Composition-based stats. Identities = 81/232 (34%), Positives = 133/232 (57%), Gaps = 3/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLL-PEHDVAYDGNPLAQQHG 59 +R+D+F+ SR+ + ++ RV ++G+ +N+ ++ + ++ +D + Sbjct: 3 IRIDRFLCHMGIGSRSEIKKYLKTCRVKLNGKFEKNSNTQVDIEKDEILFDDE-IVIYKE 61 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPV-AWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y MLNKP+ ++ +T D PTVL L+ P +L GRLDIDTTG +++T+DG++S Sbjct: 62 FTYLMLNKPKDFISATFDTKLPTVLDLLEFPYSNMELFPVGRLDIDTTGFLILTNDGKFS 121 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 + +T+P+ K Y VTL + + E+ G+ E T+ A +E I+ ++ LTI Sbjct: 122 YNVTNPKKKVNKKYFVTLRDEIISEQIEKLENGIYFEKEDFTTENAKVEKISEKEINLTI 181 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 SEG++HQVKRM V N VVEL + IG + LD L GEYR +T E+ + Sbjct: 182 SEGKFHQVKRMLEYVENEVVELKKVCIGNLNLDDSLKLGEYREITNSELEEI 233 >UniRef50_Q21EB0 Pseudouridine synthase n=14 Tax=Gammaproteobacteria RepID=Q21EB0_SACD2 Length = 249 Score = 244 bits (625), Expect = 1e-63, Method: Composition-based stats. Identities = 90/233 (38%), Positives = 129/233 (55%), Gaps = 5/233 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RLD+FI+ ++R I R+ V+G+ + + +D L P Sbjct: 7 RLDRFISLNSNLNRRDVRLAIAQKRILVNGKHASTIHQVVSQFCHITFDNQTLQANA-PV 65 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y MLNKP G V +T D HPTV+ L + + +H GRLD ++TGL+L+T++G WS + Sbjct: 66 YIMLNKPAGRVSATKDSTHPTVVGCLPQQLQANIHIVGRLDFNSTGLMLLTNNGAWSRHL 125 Query: 122 TSPRHHCEKTYLVTLESPVADDT----AEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT 177 TSP + K Y V LE + DD FA G+ E T+PA LE +T T+ R+T Sbjct: 126 TSPENKVNKIYEVELERTINDDEWPQYISAFASGMYFAFEDLTTQPAKLERLTATRARVT 185 Query: 178 ISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + EGRYHQ+KRMF N V+ LHR ++G + LD L PGE+R L ++EI + Sbjct: 186 LVEGRYHQIKRMFGRFRNKVIALHRTQLGALPLDPALQPGEHRLLNDDEIIKL 238 >UniRef50_C6XQT2 Pseudouridine synthase n=1 Tax=Hirschia baltica ATCC 49814 RepID=C6XQT2_HIRBI Length = 508 Score = 244 bits (625), Expect = 1e-63, Method: Composition-based stats. Identities = 55/228 (24%), Positives = 102/228 (44%), Gaps = 3/228 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K++A SR A R I V V+G+++ +AAFK+ + +G + R Sbjct: 35 RIAKWLAAAGVCSRREAERLIEEGLVAVNGQVLDSAAFKVTGNEKITVEGKRVGGPDKTR 94 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 + +KP+G V + DP+ ++ ++ GRLD++T GL+L+T+DG+ + + Sbjct: 95 LWRFHKPKGLVTTNSDPEGRPTVFEHLPKKLPRVMTIGRLDLNTEGLLLLTNDGELARTL 154 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLE--VITPTQVRLTIS 179 P ++ Y + ++ +GV + A L+ + +T++ Sbjct: 155 ELPTTGLKRCYRARAFGKITQAELDKLQEGVLFEGVVYRSIIATLDKTKGDNNWIDMTLT 214 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEI 227 EG+ + +R +VG V L R G L DL G + E+ Sbjct: 215 EGKKREARRALESVGLIVNRLIRVSYGPFEL-GDLVEGGVAEIPAGEL 261 >UniRef50_A3UFV9 Pseudouridine synthase n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UFV9_9RHOB Length = 354 Score = 244 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 58/219 (26%), Positives = 99/219 (45%), Gaps = 3/219 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A SR A R I RV+V+GEI+R AFK++ DV DG + Q+ R Sbjct: 18 RIAKVLAHAGIASRREAERLIEKGRVSVNGEILRTPAFKVMAGDDVRVDGESIGQRPPTR 77 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 + +KP G + + DP ++ ++ + GRLD+++ GL+L+T+DG+ + + Sbjct: 78 VWRYHKPVGLLTTHSDPQGRDTVFQTLPQDMGRVISVGRLDLNSEGLLLLTNDGELARVL 137 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEV--ITPTQVRLTIS 179 P + Y V +D + G + ++ + + I Sbjct: 138 ELPSTGWTRRYRVRAYGNASDKALAELENGTVVDGVVYGPVEVTVDRRTGANVWLTVGIK 197 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGE 218 EG+ +V+++ +VG V L R G L L GE Sbjct: 198 EGKNREVRKVLQSVGLTVNRLMRVAYGPFQL-GSLKRGE 235 >UniRef50_D0BMY5 Pseudouridine synthase n=1 Tax=Granulicatella elegans ATCC 700633 RepID=D0BMY5_9LACT Length = 237 Score = 244 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 75/235 (31%), Positives = 123/235 (52%), Gaps = 7/235 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 MRL+ + + +SR + I V +D + + + P+ + G+ + Sbjct: 1 MRLEHLLMKHFDISRKQMKKLISSGEVLIDSTPATHVSNNVDPQIQVITVQGSRMEDNSQ 60 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y++LNKP+G + +T D PTV+ L+ GRLD DT GL+++T++G + Sbjct: 61 K-YYLLNKPKGVITATTDSQLPTVIDLFKNENIEGLYPIGRLDRDTEGLLIITNNGPLGY 119 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITP----TQVR 175 R+ +P H EK Y V + P+ + ++F G+ H+ + KPA L ++ ++ Sbjct: 120 RLLNPIQHIEKEYYVEVNGPLDNSCIQRFYDGIMFHDG-TICKPAKLSILESSPSFSKAT 178 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +TISEG++HQ+K+MF VG V L R R G LD L+PGEYRPL E+ + Sbjct: 179 VTISEGKFHQIKKMFLCVGVKVTFLKRIRFGEFLLDESLSPGEYRPLNFSELQIL 233 >UniRef50_D2MQD6 Pseudouridylate synthase n=1 Tax=Bulleidia extructa W1219 RepID=D2MQD6_9FIRM Length = 231 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 82/230 (35%), Positives = 126/230 (54%), Gaps = 4/230 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLD+ +A SR ++ RV+V+G+I ++ + P DV + + Q Sbjct: 1 MRLDRVLANASVGSRTQVKNMVKNGRVSVNGKIALASSMMVDPNQDVIRIDDEILQYAKY 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 +Y ML KP GY+ +T+ PTVL + L GRLD DT GL+LMT+DG+ +H Sbjct: 61 QYLMLYKPAGYISATEGRYDPTVLELVPN--YKGLFPCGRLDKDTEGLLLMTNDGRLAHN 118 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 + SP+ H EK Y V + P++ + +G++ N K A L+++ Q + + E Sbjct: 119 LLSPKKHVEKEYYVEHQLPLSQEDVLCIERGIRYKNITY--KGAKLKILDDLQCTIILQE 176 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G+YH++K +F A+ N V L R R+ + LD L GEYRPL+EEEI + Sbjct: 177 GKYHEIKNIFLAIDNKVTYLKRIRMKNLILDETLKKGEYRPLSEEEIGDL 226 >UniRef50_Q8X4Q8 Ribosomal large subunit pseudouridine synthase B n=117 Tax=Bacteria RepID=RLUB_ECO57 Length = 290 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 69/237 (29%), Positives = 110/237 (46%), Gaps = 10/237 (4%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKL--LPEHDVAYDGNPLAQQHGP 60 L K +A+ SR I RV+VDG+I + ++ P + DG+ ++ + Sbjct: 5 LQKVLARAGHGSRREIESIIEAGRVSVDGKIAK-LGDRVEVTPGLKIRIDGHLISVRESA 63 Query: 61 ----RYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDG 115 R KP+G +C+ +DP+ PTV L + + A GRLD++T GL+L T DG Sbjct: 64 EQICRVLAYYKPEGELCTRNDPEGRPTVFDRLPKLRGARWIAVGRLDVNTCGLLLFTTDG 123 Query: 116 QWSHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT--PTQ 173 + ++R+ P E+ Y V + V D ++GVQL + K Sbjct: 124 ELANRLMHPSREVEREYAVRVFGQVDDAKLRDLSRGVQLEDGPAAFKTIKFSGGEGINQW 183 Query: 174 VRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +T++EGR +V+R++ AVG V L R R G I L L G + L + + Sbjct: 184 YNVTLTEGRNREVRRLWEAVGVQVSRLIRVRYGDIPLPKGLPRGGWTELDLAQTNYL 240 >UniRef50_D1R854 Pseudouridine synthase n=4 Tax=Chlamydiales RepID=D1R854_9CHLA Length = 261 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 66/229 (28%), Positives = 112/229 (48%), Gaps = 3/229 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 RL K +A SR I VTV+GE+ + + G + ++ Sbjct: 34 RLSKVMAAAGVASRRACEMLIFDGCVTVNGEVTLVPQTLVDENDVITCKGQSVGKKQNKV 93 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 Y++LNKP GY+CS ++ L + V +L GRLD DT+GL+++T+DG +++R+ Sbjct: 94 YYILNKPIGYICSNKRNKDSKIVLDLFDTVEERLFTVGRLDKDTSGLIIVTNDGHFANRV 153 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISEG 181 P + K YLV V + + G + K +P + + +++TI+EG Sbjct: 154 IHPSANIHKEYLVKTNEEVEAEHLSALSSGTLVE--KTFVRPIRVSKVRRGTLKITIAEG 211 Query: 182 RYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + +++ + + V+EL R RIGG+ L L PGE+R +T E + Sbjct: 212 KKREIRLLMESAKLPVLELTRIRIGGLHL-GPLQPGEWREMTAREQTLL 259 >UniRef50_B6W7S5 Pseudouridine synthase n=2 Tax=Anaerococcus RepID=B6W7S5_9FIRM Length = 231 Score = 244 bits (624), Expect = 2e-63, Method: Composition-based stats. Identities = 72/231 (31%), Positives = 121/231 (52%), Gaps = 4/231 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++K+IA+ SR + I+ V V+G+ + + ++++ V G L + Sbjct: 1 MRINKYIAKAGLASRRKSEEYIKKGLVFVNGKKLDDLSYQVKENDQVKVMGKLLEIKE-K 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y+ LNKP G++ S DP + L L + + AGRLD D+ GL+L+T+DG+ +++ Sbjct: 60 FYYKLNKPIGFISSNYDPHNKKDLNSL-VKIDHRFFCAGRLDKDSHGLMLITNDGKITNK 118 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLH-NEKDLTKPAVLEVITPTQVRLTIS 179 + P EKTY+V ++ + D F KG++L NEK L + I Sbjct: 119 LIHPSKKIEKTYIVKVDKLLNKDDEALFRKGIKLSVNEKTSDAKINLIDENSKIYEVIIH 178 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 +G QV+RMF G+ V++L R +IG I L L G+Y+ L ++E+ + Sbjct: 179 QGFNRQVRRMFLYFGSKVIDLKRIKIGQIEL-GKLEDGKYKKLNKKELEYL 228 >UniRef50_Q3AVD5 Pseudouridine synthase n=3 Tax=Cyanobacteria RepID=Q3AVD5_SYNS9 Length = 247 Score = 244 bits (623), Expect = 2e-63, Method: Composition-based stats. Identities = 80/236 (33%), Positives = 120/236 (50%), Gaps = 10/236 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHD-VAYDGNPLAQQHGP 60 RL K +A SR ++ RVTVDG + + + P + DG PL P Sbjct: 5 RLQKLMAAAGLCSRRRGEDWLQAGRVTVDGRVA-SLGDQADPNSQLIEVDGVPLISVQEP 63 Query: 61 RYFMLNKPQGYVCSTDDPDHP-TVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 R F+LNKP G +CS DP TVL L LH GRLD D+ G +L+TD G+ + Sbjct: 64 RVFLLNKPVGVICSCRDPQGRATVLDCLPHQERSGLHPVGRLDADSRGALLLTDQGELTL 123 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVL----EVITPTQVR 175 R+T PR++ KTY V + + ++ G+ L LT+PA + + + Sbjct: 124 RLTHPRYNHAKTYRVLVRGIPSSQALRRWRDGLLLDGR--LTRPARVHCLRSRGASSLLE 181 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 + + EGR Q++R+ +G+ V++L R I GI LD DLA G +R L E ++++ Sbjct: 182 VELKEGRNRQIRRVAELLGHPVIDLQRVAIDGIRLD-DLAEGCWRRLDAREWSTIL 236 >UniRef50_A8I6C3 Pseudouridine synthase n=6 Tax=Alphaproteobacteria RepID=A8I6C3_AZOC5 Length = 717 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 65/223 (29%), Positives = 109/223 (48%), Gaps = 3/223 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K IA+ SR I RV+V+GE++ + AF + E ++ DG PL ++ R Sbjct: 31 RIAKVIARAGLGSRREIEEWITAGRVSVNGEVLASPAFTVTAEDEIRVDGEPLPERERTR 90 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 F+ +KP G V + DP+ T L+ L +L + GRLDI++ GL+L+T+DG + + Sbjct: 91 LFLYHKPIGVVTTNRDPEGRTTLFELLPGHLPRLVSVGRLDINSEGLLLLTNDGGLARVL 150 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT--IS 179 P + Y V + V + KG+ + + AVL+ + V +T + Sbjct: 151 ELPETGWLRRYRVRAKGTVDQAQLDALIKGIVVEGVEYGPIEAVLDRVQGANVWITVALR 210 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPL 222 EG+ +V+ + A+G V L R G L ++A G + Sbjct: 211 EGKNREVRNVLGALGLQVNRLIRISYGPFQL-GEIAEGGVEEV 252 >UniRef50_Q2K4S3 Pseudouridine synthase n=10 Tax=Rhizobiaceae RepID=Q2K4S3_RHIEC Length = 312 Score = 244 bits (623), Expect = 3e-63, Method: Composition-based stats. Identities = 69/232 (29%), Positives = 108/232 (46%), Gaps = 6/232 (2%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLL-PEHDVAYDGNPLAQQHGPR 61 L + +++ SR A R I +RV VDG V +A+ + ++ DG + Sbjct: 72 LPRALSKLGYCSRTQAERLIAESRVAVDGRTVSDASAWVDLSTARISVDG-LVIAAEAKI 130 Query: 62 YFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y MLNKP+G V + DP+ PTV L L GRLD + GL+L T+D +++ Sbjct: 131 YLMLNKPRGLVTTRQDPEGRPTVYDCLKNFDIPHLSPVGRLDKASEGLLLFTNDTEFAQT 190 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT--PTQVRLTI 178 + P H KTY V ++ + D+ G++ E + + + + Sbjct: 191 LLDPLTHVTKTYHVQIDRLMDDEEIAAMTSGIRHDGELLTAAATRRLRQGDRNSWIEVEL 250 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EGR Q++RM A+G + L R IGG+ L +L G R LTE E+ + Sbjct: 251 DEGRNRQIRRMLEALGAECLRLVRVAIGGLEL-GELPKGAVRALTEGELQGL 301 >UniRef50_B2HUK5 Pseudouridine synthase n=9 Tax=Gammaproteobacteria RepID=B2HUK5_ACIBC Length = 307 Score = 243 bits (622), Expect = 3e-63, Method: Composition-based stats. Identities = 66/236 (27%), Positives = 112/236 (47%), Gaps = 10/236 (4%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHG--- 59 L K +A+ SR I RV+V+G I ++ P ++ DG + Q Sbjct: 5 LQKVLARIGLGSRRYMEEVIAAGRVSVNGRIA-QVGERIEPGDELRIDGRKVQFQIEDEI 63 Query: 60 -PRYFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQW 117 R + KP+G +CS +DP+ PTV L + + GRLDI++TGL+L T+DG+ Sbjct: 64 RRRVLIYYKPEGEICSRNDPEKRPTVFDHLPQIANDRWVMVGRLDINSTGLLLFTNDGEL 123 Query: 118 SHRITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT---PTQV 174 ++R+ P + E+ Y V + V + GV+L + + E+ Sbjct: 124 ANRLMHPSNEIEREYAVRVMGEVTPQLRQNMVNGVELEDGPAKFESFS-EIGGEGINRWY 182 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 ++ + EGR +V+R+F + G V L R R G + L +L G + L + +I ++ Sbjct: 183 QVVVKEGRNREVRRIFESQGLKVSRLLRTRYGTVILPRELRTGRWMELDKTDIDNL 238 >UniRef50_C5SKU3 Pseudouridine synthase n=2 Tax=Asticcacaulis excentricus CB 48 RepID=C5SKU3_9CAUL Length = 489 Score = 243 bits (621), Expect = 4e-63, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 104/237 (43%), Gaps = 8/237 (3%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A+ SR R I ++ V+G ++ A + P+ + +G P+ + R Sbjct: 47 RIAKVLARAGLASRREVERLIGLGKIAVNGRLLDTPATTVSPDDLITVEGKPIRKAEPTR 106 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 + +KP G + + DP ++ ++ + GRLDI++ GL+L+T+DG+ + + Sbjct: 107 VWRYHKPVGLMTTHQDPQGRPTVFNSLPQELPRVISVGRLDINSEGLLLLTNDGELARAL 166 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT-------QV 174 P + Y V + + GV + + A L+ + Sbjct: 167 ELPTTGWTRVYRVRALGRTTQEALDTLKTGVTVEGVQYGPIEAKLDKAQEKADGRANLWI 226 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 ++++EG+ +V+++ ++G V L R G L D+ PGE + + ++ Sbjct: 227 TVSLNEGKNREVRKVLDSLGLKVNRLIRLAYGPFQL-GDIEPGEVEEIGPRVVRELL 282 >UniRef50_B9JSE7 Ribosomal large subunit pseudouridine synthase B n=4 Tax=Alphaproteobacteria RepID=B9JSE7_AGRVS Length = 704 Score = 242 bits (620), Expect = 5e-63, Method: Composition-based stats. Identities = 54/223 (24%), Positives = 96/223 (43%), Gaps = 3/223 (1%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A+ SR R I RV V+G+++ + + DG P+ R Sbjct: 84 RISKLLARAGIASRRDVERMIMEGRVAVNGKVLDSPVLNATLADRIEVDGEPIRGIERTR 143 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 ++ +KP G V + DP+ ++ ++ + GRLDI+T GL+L+T+DG + + Sbjct: 144 LWLYHKPSGLVTTNSDPEGRPTVFDNLPEELPRVMSIGRLDINTEGLLLLTNDGGLARVL 203 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLT--IS 179 P + Y V + + G+ + AVL+ V +T + Sbjct: 204 ELPTTGWLRRYRVRAYGEIDQAKLDTLKDGIAVDGVLYGAIDAVLDRSQGHNVWITMGLR 263 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPL 222 EG+ ++K + A+G V L R G L DL + + + Sbjct: 264 EGKNREIKNVLGALGLEVNRLIRISYGPFQL-GDLPESQVQEV 305 >UniRef50_A0PYR9 Pseudouridine synthase n=9 Tax=Clostridium RepID=A0PYR9_CLONN Length = 229 Score = 242 bits (620), Expect = 5e-63, Method: Composition-based stats. Identities = 64/230 (27%), Positives = 118/230 (51%), Gaps = 7/230 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR++K ++ SR A R I NR+ V+G++ + ++ D + + Sbjct: 1 MRINKLLSNYGICSRKEANRIIEQNRIIVNGKLCI-PGQWVEESDEILLDNKRIKPK-KK 58 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +LNKP G C++ ++ F++ + GRLD + GL+++T+DG+ S++ Sbjct: 59 VYILLNKPVGITCTSSKDIKANIIDFVNYRDY--IFPVGRLDKKSEGLIILTNDGELSNK 116 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 I + EK Y+V ++ P D+ E +KGVQL K T ++ I ++ +++ Sbjct: 117 ILESENMHEKEYVVKVDKPFDDEFIENMSKGVQLKGVKTRT--CIVRRIDECTFKIILTQ 174 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 G Q+++M A G VV+L R RI + +D + G +R TE+E+ ++ Sbjct: 175 GLNRQIRKMTRAFGYTVVKLKRIRIMNLKIDG-IDIGSFRHFTEDELNNI 223 >UniRef50_D0J8G4 Pseudouridine synthase, Rsu n=96 Tax=Bacteria RepID=D0J8G4_COMTE Length = 642 Score = 242 bits (620), Expect = 6e-63, Method: Composition-based stats. Identities = 72/250 (28%), Positives = 112/250 (44%), Gaps = 28/250 (11%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +R++K IA SR A + VTV+GE+ ++P + D +Q Sbjct: 395 VRINKRIADMGMCSRREADEWVENGWVTVNGEVAT-MGQNVVPGDRIEIDQKAQERQDQQ 453 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK---------------LHAAGRLDIDT 105 +LNKP GYV + H + + W L GRLDID+ Sbjct: 454 VTILLNKPMGYVSGQAEDGHEPAVVLITNENRWNEDRSKTRFNFSQLKGLAPCGRLDIDS 513 Query: 106 TGLVLMTDDGQWSHRITSPRHHCEKTYLVTL---------ESPVADDTAEQFAKGVQLHN 156 GL+++T DG+ + +I +K YLV + +S ++ G+ L Sbjct: 514 VGLLVLTQDGRVARQIIGEDSEVDKEYLVRVTFGDRDVDVQSVFPEEKLALLRHGLSLDE 573 Query: 157 EKDLTKPAVLEVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAP 216 + KPA ++ P Q+R ++EG+ Q++RM VG VV L R RIGG+TL +L Sbjct: 574 QPL--KPAQVDWQNPEQLRFVLTEGKKRQIRRMCEQVGLKVVGLKRIRIGGVTL-GNLPT 630 Query: 217 GEYRPLTEEE 226 G++R L E Sbjct: 631 GQWRYLAPHE 640 >UniRef50_C5CED2 Pseudouridine synthase n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CED2_KOSOT Length = 235 Score = 242 bits (620), Expect = 6e-63, Method: Composition-based stats. Identities = 84/230 (36%), Positives = 133/230 (57%), Gaps = 3/230 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLD F+++ G+SR + + I+ RV V+G +RN FK+ + DGN + G Sbjct: 1 MRLDTFLSRFGGISRRQSRKLIKTGRVEVNGAKIRNPEFKIPENSSIFLDGNRIVPY-GK 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y +NKP GYVCS + +V ++E + KL AGRLD ++ GL+L+++DG + H Sbjct: 60 LYIAMNKPVGYVCSKSRTEGLSVYDLINEVFSSKLSIAGRLDKNSRGLLLLSNDGNFVHE 119 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 I SPR EK Y+V +E + + + + V + + + ++ I + ++E Sbjct: 120 IISPRKKIEKEYIVKVEEKILPEQLQILLQHVDIGKGEY-ARAESVQFIDIVTFSIVLTE 178 Query: 181 GRYHQVKRMF-AAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 G+YH+++RM +A+ N+VV+L R RIGG L DL GE+R LTEEEI + Sbjct: 179 GKYHEIRRMVKSALKNNVVDLKRIRIGGYHLPGDLHEGEWRILTEEEIKA 228 >UniRef50_C6VP86 Pseudouridine synthase n=4 Tax=Lactobacillaceae RepID=C6VP86_LACPJ Length = 246 Score = 242 bits (619), Expect = 7e-63, Method: Composition-based stats. Identities = 74/236 (31%), Positives = 117/236 (49%), Gaps = 6/236 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MR+DKF+ +R R I+ +T +GE V + ++ P D + + + Sbjct: 1 MRVDKFLHAMRIGTRTQVRRLIKDGHITANGEPVISGKQQINPGSDTVFLDDVQVRYQQY 60 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDE-PVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y+++NKP G + +T D TV+ + L GRLD DT G++++T+DG SH Sbjct: 61 FYYVMNKPVGVITATTDSAAKTVMDLFNTTDFRDDLFPVGRLDKDTEGILVITNDGALSH 120 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNE-KDLTKPAVL----EVITPTQV 174 + SP HH K Y + + F G+ L + + A + E+ T + Sbjct: 121 DLLSPNHHVTKVYEAEVTGEITAAQLANFNDGITLKDGTELQPAQAEIVQFHEIENFTTI 180 Query: 175 RLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 R+ I EG+YHQVKRM +G VV L R + G +TL L G YR LT++E+ ++ Sbjct: 181 RIMIHEGKYHQVKRMVGTLGERVVGLRRIKFGSLTLPVGLLAGNYRALTDDELTAL 236 >UniRef50_B4W9R3 Pseudouridine synthase n=2 Tax=Brevundimonas RepID=B4W9R3_9CAUL Length = 519 Score = 242 bits (619), Expect = 7e-63, Method: Composition-based stats. Identities = 55/241 (22%), Positives = 100/241 (41%), Gaps = 12/241 (4%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGPR 61 R+ K +A+ SR R I +V V+G I+ A + + + DG P+ R Sbjct: 87 RIAKTMARAGIASRREVERLIGLGKVAVNGRILDTPATLVTRDDVITVDGKPIGSTQATR 146 Query: 62 YFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHRI 121 + +KP G + S DP ++ ++ + GRLD+ T GL+L+T+DG+ S + Sbjct: 147 VWRYHKPAGLLTSHSDPTGRPTVFDALPAGLPRVISVGRLDLATEGLLLLTNDGELSRAL 206 Query: 122 TSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPT--------- 172 P + Y + + ++ GV + A L+ + Sbjct: 207 ELPATSLVRQYRARARGKITQEQLDKLKDGVVVDGVSYGPIEATLDKAKESKSEDGRAPA 266 Query: 173 --QVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + ++I+EG+ +V+++ +VG V L R G LD L G + I + Sbjct: 267 NLWISVSITEGKNREVRKVLESVGLTVNRLIRLAYGPFRLD-VLPIGSVEEVGPRVIREL 325 Query: 231 V 231 + Sbjct: 326 L 326 >UniRef50_A7HJ83 RNA-binding S4 domain protein n=3 Tax=Thermotogaceae RepID=A7HJ83_FERNB Length = 245 Score = 242 bits (618), Expect = 9e-63, Method: Composition-based stats. Identities = 80/231 (34%), Positives = 137/231 (59%), Gaps = 6/231 (2%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RLDKF++ +R + I+ RV+V+ EI+RN F + + + DGN + H Sbjct: 15 IRLDKFLSNAHIGTRNEVKKIIKEGRVSVNFEIIRNPDFHVKLDDIIELDGNRIE-PHKN 73 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y + +KP G+V +T D + P+VL +D P +LH AGRLD D GL+++T+DG+++H Sbjct: 74 VYIIFHKPSGFVSTTSDRE-PSVLNLIDHPYLNELHIAGRLDKDVEGLLILTNDGEFTHN 132 Query: 121 ITSPRHHCEKTYLVTLES--PVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTI 178 + SP+ H EK Y + + V + + ++G++L + T P + ++ + LTI Sbjct: 133 LISPKKHIEKEYWIYTKENVEVTQNMVKMVSEGIELE-KGTKTLPGKIRKVSEKIISLTI 191 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 EG+YHQVK+M ++G ++ R RIG +TL+ L G+++ L++EEI+ Sbjct: 192 VEGKYHQVKKMCISLGIEWEKIVRVRIGNLTLEG-LEKGKWKELSKEEISK 241 >UniRef50_Q0BE12 Pseudouridine synthase, Rsu n=7 Tax=Burkholderia RepID=Q0BE12_BURCM Length = 690 Score = 242 bits (618), Expect = 9e-63, Method: Composition-based stats. Identities = 66/250 (26%), Positives = 111/250 (44%), Gaps = 27/250 (10%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRL K +++ SR A I V VDGE + K+ P+ + D A Q Sbjct: 442 MRLSKRMSELGLCSRREADEWIEKGWVLVDGERIDTLGTKVRPDQKIEIDERASAAQAAQ 501 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK---------------LHAAGRLDIDT 105 +L+KP GYV + + + W L AGRLDID+ Sbjct: 502 VTILLHKPVGYVSGQAEDGYEPASVLITRANQWSGDRSPLRFSPQHLHALAPAGRLDIDS 561 Query: 106 TGLVLMTDDGQWSHRITSPRHHCEKTYLVTL---------ESPVADDTAEQFAKGVQLHN 156 TG++++T +G+ + ++ + +K YLV + + ++ + G++L Sbjct: 562 TGMLVLTQNGRIAKQLIGEQSDIDKEYLVRVRFGERLLDIDQHFPAESLAKLRHGLELDG 621 Query: 157 EKDLTKPAVLEVITPTQVRLTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAP 216 KPA++ Q+R + EG+ Q++RM VG V+ L R R+G + L L Sbjct: 622 V--ALKPAMVSWQNGEQLRFVLREGKKRQIRRMCELVGLEVIGLKRVRMGRVML-GALPQ 678 Query: 217 GEYRPLTEEE 226 G++R L+ +E Sbjct: 679 GQWRYLSPDE 688 >UniRef50_A6DF49 Pseudouridine synthase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DF49_9BACT Length = 236 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 65/235 (27%), Positives = 111/235 (47%), Gaps = 9/235 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLL-PEHDVAYDGNPLAQQHG 59 MR+ KFIA SR A + +T++ V + ++ +V Y PL Sbjct: 1 MRIAKFIAACGVCSRRKAEELVNEGHITINNHRVTELSTQVDVDNDEVRYRRKPLVL-EK 59 Query: 60 PRYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWS 118 Y++LNKP GYVC+ DDP + L + +L+ GRLD + GL+++T+DG + Sbjct: 60 KLYYLLNKPVGYVCTNDDPFAEKKAIDLLPD--KGRLYTVGRLDKPSEGLIVLTNDGDLA 117 Query: 119 HRITSPRHHCEKTYLVTLESPVADDTAEQF-AKGVQLHNEKDLTKPAVLEVI--TPTQVR 175 +T P EK Y VT++ V+ + G+ A ++ + Sbjct: 118 KIMTHPSFELEKKYRVTVKGRVSQKKLDYLVRDGLTFEGVNYRVLDARIKKQVPGGYMIN 177 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 T++EG+ +++++ ++ V L R I GI L L PG +RP+T+ E+ + Sbjct: 178 FTLNEGKNREIRKICQSLDLQVKRLRRYEIAGIAL-GKLPPGAWRPMTQSEVRFL 231 >UniRef50_A0M7H0 Ribosomal large subunit pseudouridine synthase F n=4 Tax=Flavobacteriales RepID=A0M7H0_GRAFK Length = 295 Score = 242 bits (618), Expect = 1e-62, Method: Composition-based stats. Identities = 70/232 (30%), Positives = 116/232 (50%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL+K+IA SR A I VTV+G+ + +++ E DV +DG L P Sbjct: 63 IRLNKYIANSGVCSRRDADMYIAAGNVTVNGKSITEMGYRVKLEDDVRFDGRRLN-PEKP 121 Query: 61 RYFMLNKPQG-YVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP G +V + TV+ + + K+ G+LD GL+L T+DG + Sbjct: 122 EYILLNKPAGFFVTGNPEKGGKTVMELVARTTSAKVSPVGKLDNQAKGLLLFTNDGTLAK 181 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEK-DLTKPAVLEVITPTQVRLTI 178 ++ P++ + Y VTL + + E KGV + K +T + +E +V + + Sbjct: 182 KLAKPKNGIRQIYQVTLNKNLTKEDLEGIEKGVYIEGSKVLITSISFIEDKPHNEVGIEL 241 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + H V R+F ++G V L R GG+T DL G +R LT++E+ ++ Sbjct: 242 YSIKEHIVTRIFKSLGYEVESLDRVVFGGLT-KKDLPRGRHRNLTKQEVINL 292 >UniRef50_C1XNC4 Pseudouridine synthase n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XNC4_MEIRU Length = 257 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 91/232 (39%), Positives = 116/232 (50%), Gaps = 5/232 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEH-DVAYDGNPLAQQHGP 60 RLDK + SR R R +T++G+IV +A FK P + G PL Sbjct: 20 RLDKVLGHLGVGSRKEIHRLARAGLITINGKIVADAGFKFDPSQAHIEVAGEPLV-YQKF 78 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPV-AWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +LNKP GY+ ST DP + L E GRLD DT GL+L+T DG+ H Sbjct: 79 FYLLLNKPAGYITSTKDPSGTPITALLPEEFWRNDWMPVGRLDKDTEGLLLLTTDGELLH 138 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKG-VQLHNEKDLTKPAVLEVITPTQVRLTI 178 R+T PR K Y V L SP + FA G ++L E L P +V L + Sbjct: 139 RLTHPRWKVTKRYYVELASPATPEDVAVFAAGTLELEGEPLQPAELYL-GPDPRKVELVL 197 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EGR+HQVKRMFAA GN V L R G + L +L PG R LT +EI ++ Sbjct: 198 REGRFHQVKRMFAARGNQVTYLKRLAFGPLQLPPNLPPGASRQLTPDEIKAL 249 >UniRef50_B7VP37 Pseudouridine synthase n=2 Tax=Gammaproteobacteria RepID=B7VP37_VIBSL Length = 241 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 102/229 (44%), Positives = 152/229 (66%), Gaps = 3/229 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDK++ + +++ A + I+ V+V+ +V + + ++ + + +G+ L + Sbjct: 10 MRLDKYLCKSTELTKLEAVQRIQNGEVSVNSVVVLDESTQVHESNAILLNGDALTLRE-F 68 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 RY +++KP G +CS D +P++ +L+ A +LH AGRLD DTTGLVL+TDDG+WS Sbjct: 69 RYILMHKPAGTICSNIDEVYPSLFNYLELEKASELHIAGRLDADTTGLVLITDDGRWSFN 128 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 IT P C+K Y V L + DD A++F G+QL E+ LT+PA LEVIT +V LTI+E Sbjct: 129 ITLPTKSCKKVYRVILSRDIKDDVADKFKAGIQLQGEQKLTRPAELEVITSKEVLLTITE 188 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIAS 229 G++HQVKRMFAAVGN VV LHRE+IG + L D+ G++R LT+ E+ S Sbjct: 189 GKFHQVKRMFAAVGNRVVGLHREQIGDVRL--DVEAGQWRYLTKAEVDS 235 >UniRef50_A0LG30 Pseudouridine synthase n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LG30_SYNFM Length = 250 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 73/235 (31%), Positives = 109/235 (46%), Gaps = 8/235 (3%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHG 59 +RL K +AQ SR A IR RV V+G +V K+ P + D +A Sbjct: 4 VRLQKVLAQAGIASRRGAEEVIRQGRVVVNGIVVTELGVKVDPHADRITVDRVTIAMVES 63 Query: 60 PRYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 Y +L KP+ V + DP ++ +L GRLD D GL+L+T+DG ++ Sbjct: 64 RVYLLLFKPRCCVTTARDPQGRKTVFDFVPDAGARLFPVGRLDFDAEGLLLLTNDGLLAN 123 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVIT----PTQVR 175 R+ PR+ KTY V ++ GV L +T PA + VI T++R Sbjct: 124 RLQHPRYGVTKTYEVAAMGHPTPAALDRLRTGVMLEEG--MTAPAEVTVIGSSPRSTRLR 181 Query: 176 LTISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 + + +G Q+KRM AVG+ V+ + R G + L L PG R L E+ + Sbjct: 182 IVLHQGWNRQIKRMGEAVGHPVLSIKRVAFGPLKL-GSLKPGGSRHLKSGEVELL 235 >UniRef50_Q73PC4 Pseudouridine synthase n=1 Tax=Treponema denticola RepID=Q73PC4_TREDE Length = 234 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 74/232 (31%), Positives = 122/232 (52%), Gaps = 4/232 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 +RL ++A+ SR + I RV+VDG+I+ K+ + + DG + + Sbjct: 5 IRLQVYLARCGVASRRASENLILNGRVSVDGKIITELGIKVSGKEKICLDGKQIFPEAEK 64 Query: 61 RYFMLNKPQGYVCSTDDP-DHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSH 119 RY +LNKP+GYVCS D D P L + +L+ GRLD+ + G +L T+DG +S Sbjct: 65 RYILLNKPEGYVCSLADEKDRPIAASLLKDTYTERLYNIGRLDMLSGGAILFTNDGDFSA 124 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTIS 179 ++ P EK Y V D+ ++F +GV++ A E I+ ++R+ + Sbjct: 125 KVEHPSSEIEKEYEVITVFEYPDEILQKFLRGVRIEGVFYKALSA--ERISKNKMRIVLI 182 Query: 180 EGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASVV 231 EG+ +++R+ + +L R RIG + L ADL G++RPLT EEI ++ Sbjct: 183 EGKNREIRRVLKFFNIKIKKLTRVRIGCVYL-ADLPSGKHRPLTSEEIKGLL 233 >UniRef50_A7VSS7 Pseudouridine synthase n=2 Tax=Clostridiales RepID=A7VSS7_9CLOT Length = 256 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 95/234 (40%), Positives = 133/234 (56%), Gaps = 7/234 (2%) Query: 2 RLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPE-HDVAYDGNPLAQQHGP 60 RLDK ++ Q SR AG IR V V+G + K PE + +G PL Q Sbjct: 7 RLDKILSSQGVGSRKEAGILIRRGLVHVNGILATRPETKTDPERDQITIEGKPLRFQ-RH 65 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWK-LHAAGRLDIDTTGLVLMTDDGQWSH 119 Y M+NKP G V ++ D TV+ + ++ + L AGRLD DTTGL+++TDDG+ +H Sbjct: 66 VYLMMNKPAGVVSASRDSREKTVVDLVPPVLSRRDLFPAGRLDRDTTGLLILTDDGELAH 125 Query: 120 RITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVR---L 176 R+ SP+ H K Y +++ PV + E+FA GV L + + PA L V+ + Sbjct: 126 RMLSPKKHVYKLYEASVDGPVGAEEIEKFAAGVALEDG-TVCLPAGLTVVKQGTAWETLV 184 Query: 177 TISEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 I EG++HQVK+MF AVG V+ L R RIGG+ LD L GE R LT+EE+A + Sbjct: 185 EIREGKFHQVKKMFLAVGRRVLRLKRVRIGGLELDKTLKEGECRELTKEELALI 238 >UniRef50_A6LLC7 RNA-binding S4 domain protein n=1 Tax=Thermosipho melanesiensis BI429 RepID=A6LLC7_THEM4 Length = 230 Score = 240 bits (615), Expect = 2e-62, Method: Composition-based stats. Identities = 76/224 (33%), Positives = 125/224 (55%), Gaps = 4/224 (1%) Query: 1 MRLDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLLPEHDVAYDGNPLAQQHGP 60 MRLDKF++ SR R I+ V ++GEI+ N FK+ V + P+ H Sbjct: 1 MRLDKFLSNAKVGSRKEVKRLIKFGIVKINGEIITNVDFKVKENDIVTVNNTPITPYHN- 59 Query: 61 RYFMLNKPQGYVCSTDDPDHPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y + NKP GY S + + + F+D P LH AGRLD D GL+L+T+DG ++H+ Sbjct: 60 VYIIFNKPTGYTSSKSEFE-RNIFEFIDHPYVENLHIAGRLDKDVEGLLLITNDGIFTHK 118 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNEKDLTKPAVLEVITPTQVRLTISE 180 ITSP+ EK Y+V ++ ++D+ ++ G+ L N KPA+++ + + +TI+E Sbjct: 119 ITSPKSKIEKEYIVKVDKEISDEMIQKAKDGIVLKNG-TRFKPAIIKRLKDNFISITITE 177 Query: 181 GRYHQVKRMFAAVGNHVVELHRERIGGITLDA-DLAPGEYRPLT 223 G+YH++K + +G ++ R RIG + L+ +L GE+ + Sbjct: 178 GKYHEIKLIVKFLGLSYKKIERIRIGKLKLEDFNLKRGEWSEID 221 >UniRef50_C6AV89 Pseudouridine synthase n=17 Tax=Rhizobiaceae RepID=C6AV89_RHILS Length = 268 Score = 240 bits (614), Expect = 3e-62, Method: Composition-based stats. Identities = 72/232 (31%), Positives = 112/232 (48%), Gaps = 6/232 (2%) Query: 3 LDKFIAQQLGVSRAIAGREIRGNRVTVDGEIVRNAAFKLL-PEHDVAYDGNPLAQQHGPR 61 L + +++ SR A R I NRV VDG V +A+ + ++ DG + Sbjct: 27 LPRALSKLGYCSRTQAERLIAENRVAVDGRTVSDASAWVDLATASISIDG-LVIAAEAKI 85 Query: 62 YFMLNKPQGYVCSTDDPD-HPTVLYFLDEPVAWKLHAAGRLDIDTTGLVLMTDDGQWSHR 120 Y MLNKP+G V + DP+ PTV L + L GRLD + GL+L T+D +++ Sbjct: 86 YLMLNKPRGLVTTRHDPEGRPTVYDCLRDFDIPHLSPVGRLDKASEGLLLFTNDTEFAQI 145 Query: 121 ITSPRHHCEKTYLVTLESPVADDTAEQFAKGVQLHNE-KDLTKPAVLEVIT-PTQVRLTI 178 + P H KTY V ++ + D+ G++ E T L + + + + Sbjct: 146 LLDPVTHVTKTYHVQIDRIMDDEDIAAMTAGIRHDGELLTATAARRLRQGDRNSWIEVEL 205 Query: 179 SEGRYHQVKRMFAAVGNHVVELHRERIGGITLDADLAPGEYRPLTEEEIASV 230 EGR Q++RM A+G + L R IGG+ L +L G R LTE E+ ++ Sbjct: 206 DEGRNRQIRRMLEALGTECLRLVRVAIGGLEL-GELPKGAVRALTEPELQAL 256 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.316 0.201 0.664 Lambda K H 0.267 0.0613 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,131,311,154 Number of Sequences: 3077464 Number of extensions: 129892867 Number of successful extensions: 280813 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 2574 Number of HSP's successfully gapped in prelim test: 1692 Number of HSP's that attempted gapping in prelim test: 268876 Number of HSP's gapped (non-prelim): 4787 length of query: 231 length of database: 1,040,396,356 effective HSP length: 124 effective length of query: 107 effective length of database: 658,790,820 effective search space: 70490617740 effective search space used: 70490617740 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 92 (39.5 bits)