BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (140 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P76064 Uncharacterized protein ydaT n=20 Tax=Enterobact... 288 3e-77 UniRef50_C8U4T3 Probable phage regulatory protein CII n=2 Tax=Es... 148 5e-35 UniRef50_C4SVT0 tRNA-(Guanine-N1)-methyltransferase n=1 Tax=Yers... 69 4e-11 UniRef50_B7UQF8 Probable phage regulatory protein n=95 Tax=Enter... 54 2e-06 UniRef50_Q0TIS0 Bacteriophage regulatory protein CII n=25 Tax=En... 47 2e-04 UniRef50_C0AW01 Putative uncharacterized protein n=2 Tax=Enterob... 47 2e-04 UniRef50_Q7N1J8 Similarities with unknown protein and with YdaT ... 47 3e-04 UniRef50_A7ZND8 Putative uncharacterized protein n=2 Tax=Escheri... 45 6e-04 UniRef50_B4T224 Putative uncharacterized protein n=2 Tax=Salmone... 39 0.041 >UniRef50_P76064 Uncharacterized protein ydaT n=20 Tax=Enterobacteriaceae RepID=YDAT_ECOLI Length = 140 Score = 288 bits (738), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 140/140 (100%), Positives = 140/140 (100%) Query: 1 MKIKHEHIESVLFALAAEKGQAWVANAITEEYLRQGGGELPLVPGKDWNNQQNIYHRWLK 60 MKIKHEHIESVLFALAAEKGQAWVANAITEEYLRQGGGELPLVPGKDWNNQQNIYHRWLK Sbjct: 1 MKIKHEHIESVLFALAAEKGQAWVANAITEEYLRQGGGELPLVPGKDWNNQQNIYHRWLK 60 Query: 61 GETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDDAVQA 120 GETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDDAVQA Sbjct: 61 GETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDDAVQA 120 Query: 121 VYRKAHFSGGGSSDDSVIVH 140 VYRKAHFSGGGSSDDSVIVH Sbjct: 121 VYRKAHFSGGGSSDDSVIVH 140 >UniRef50_C8U4T3 Probable phage regulatory protein CII n=2 Tax=Escherichia coli RepID=C8U4T3_ECO10 Length = 145 Score = 148 bits (374), Expect = 5e-35, Method: Compositional matrix adjust. Identities = 86/149 (57%), Positives = 101/149 (67%), Gaps = 13/149 (8%) Query: 1 MKIKHEHIESVLFA--LAAEKGQAWVANAITEEYLRQGGGELPLVPGKDWN-------NQ 51 MKIKHEHI + A L G+ +A+ I Y E+ P D + N Sbjct: 1 MKIKHEHIRMAMNAWLLYPRVGRKKIADDIATAYFEL---EMTYPPMHDTSTTEGIGLNI 57 Query: 52 QNIYHRWLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAI 111 QNI+ RWL+ +T EKIQ LIPAIL +LPRELR+ L IFDT+ERRALLAAQEALSTAI Sbjct: 58 QNIF-RWLEKDTPDAVEKIQALIPAILTVLPRELRYHLSIFDTVERRALLAAQEALSTAI 116 Query: 112 DAHDDAVQAVYRKAHFSGGGSSDDSVIVH 140 DAHDDAVQAVYRKA+FS GGSS +SV+VH Sbjct: 117 DAHDDAVQAVYRKAYFSDGGSSGESVVVH 145 >UniRef50_C4SVT0 tRNA-(Guanine-N1)-methyltransferase n=1 Tax=Yersinia frederiksenii ATCC 33641 RepID=C4SVT0_YERFR Length = 146 Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 41/93 (44%), Positives = 53/93 (56%), Gaps = 5/93 (5%) Query: 1 MKIKHEHIESVLFALAAEKGQAWVANAITEEYLRQGGGELPLVPGKD----WNNQQNIYH 56 MK+KH+ I + L AAE Q VA I + Y GGG+LPL P D NN+Q ++ Sbjct: 1 MKLKHDAICAELRGWAAETKQEIVAAEIAQAYFVLGGGDLPLTPVNDEHATHNNKQRLF- 59 Query: 57 RWLKGETKTQREKIQKLIPAILAILPRELRHRL 89 RW+ +T + KI +L PAIL LP E R RL Sbjct: 60 RWIDSDTDRSKTKIAELTPAILRALPGERRARL 92 >UniRef50_B7UQF8 Probable phage regulatory protein n=95 Tax=Enterobacteriaceae RepID=B7UQF8_ECO27 Length = 141 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 7/144 (4%) Query: 1 MKIKHEHIESVLFALAAEKGQAWVANAITEEYLRQGGGELPLV----PGKDWNNQQNIYH 56 MKIKHEHI + A G+ A IT+ Y G L P N Q I+ Sbjct: 1 MKIKHEHIRMAMNVWAHPDGEKVPAAKITKAYFELGMTFPELYDDSHPEALARNTQKIF- 59 Query: 57 RWLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDD 116 RWL +T EK+Q L+PAI +P L R+ + R ++ ++ L +D D Sbjct: 60 RWLDKDTPDAVEKMQALLPAIEKAMPPLLVARMRSHSSEYYREIVERRDRLVKDVD--DF 117 Query: 117 AVQAVYRKAHFSGGGSSDDSVIVH 140 AV + GG + ++V++H Sbjct: 118 VASAVVLYDQMNRGGPAGNAVVMH 141 >UniRef50_Q0TIS0 Bacteriophage regulatory protein CII n=25 Tax=Enterobacteriaceae RepID=Q0TIS0_ECOL5 Length = 181 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 34/96 (35%), Positives = 49/96 (51%), Gaps = 4/96 (4%) Query: 5 HEHIESVLFALAAEKGQAWVANAITEEYLRQGGGELPLVPGKDWNNQQNIYHRWL--KGE 62 HE I + A +A Q VA I EY QGGG + P +Q ++ R+L K + Sbjct: 31 HEKIRDAVRAWSAADNQDVVAALIVNEYREQGGGTIDF-PDDVSRARQKLF-RFLDNKFD 88 Query: 63 TKTQREKIQKLIPAILAILPRELRHRLCIFDTLERR 98 ++ R +++L PAILA+LP E R L D+ R Sbjct: 89 SEKYRNNVRELTPAILAVLPLEYRGHLVEQDSYMAR 124 >UniRef50_C0AW01 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=C0AW01_9ENTR Length = 151 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 31/79 (39%), Positives = 45/79 (56%), Gaps = 13/79 (16%) Query: 16 AAEKGQAWVANAITEEYLR----QGGGELPLVPGK----DW----NNQQNIYHRWLKGET 63 A E+GQ VA I+ YLR Q G L ++ + DW NN+Q I+ RWL+G++ Sbjct: 16 AVEQGQEHVAIEISRAYLRLVINQEHGRLHVIEDQTGRADWKAINNNRQQIF-RWLRGDS 74 Query: 64 KTQREKIQKLIPAILAILP 82 + + KI +L+PAI LP Sbjct: 75 RASQRKIAELMPAIEMALP 93 >UniRef50_Q7N1J8 Similarities with unknown protein and with YdaT protein of Escherichia coli n=5 Tax=Enterobacteriaceae RepID=Q7N1J8_PHOLL Length = 149 Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 33/87 (37%), Positives = 51/87 (58%), Gaps = 12/87 (13%) Query: 14 ALAAEKGQAWVANAITEEYL----RQGGGEL-PL-VPGK-DW----NNQQNIYHRWLKGE 62 A AAEKGQ +VA I+ Y R +L P+ + G +W NN+Q I+ RWL+ + Sbjct: 14 AWAAEKGQEYVAIEISRMYFLLCERTVSAKLHPIEINGNANWKAINNNRQQIF-RWLRSD 72 Query: 63 TKTQREKIQKLIPAILAILPRELRHRL 89 ++ R K+ +L+PAI + LP E + R+ Sbjct: 73 SRAARRKVSELLPAIQSALPLERKARI 99 >UniRef50_A7ZND8 Putative uncharacterized protein n=2 Tax=Escherichia coli RepID=A7ZND8_ECO24 Length = 158 Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 36/95 (37%), Positives = 45/95 (47%), Gaps = 12/95 (12%) Query: 6 EHIESVLFALAAEKGQAWVANAITEEYLRQG-GGELPL-----VPGK-DW----NNQQNI 54 E ++ + AA GQ V I + QG EL L G DW NN+Q I Sbjct: 5 EELQKEILTWAARAGQELVTIEICRAWFSQGRNDELRLHEFEDADGNVDWRAINNNRQKI 64 Query: 55 YHRWLKGETKTQREKIQKLIPAILAILPRELRHRL 89 + RWL+GET R K Q L + A+LP E R RL Sbjct: 65 F-RWLRGETTAARRKTQVLASVMKAVLPAERRARL 98 >UniRef50_B4T224 Putative uncharacterized protein n=2 Tax=Salmonella enterica subsp. enterica RepID=B4T224_SALNS Length = 115 Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust. Identities = 24/57 (42%), Positives = 31/57 (54%), Gaps = 13/57 (22%) Query: 47 DW----NNQQNIYHRWLKGETKTQREKIQKLIPAILAILPRE--------LRHRLCI 91 DW NN+Q I+ RWL+GETK R K + L A+ A LP E +H +CI Sbjct: 21 DWRAINNNRQQIF-RWLRGETKAARTKTKALAKAMEAALPAERYAQLGMTAQHLICI 76 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P76064 Uncharacterized protein ydaT n=20 Tax=Enterobact... 211 4e-54 UniRef50_C8U4T3 Probable phage regulatory protein CII n=2 Tax=Es... 184 6e-46 UniRef50_B7UQF8 Probable phage regulatory protein n=95 Tax=Enter... 173 2e-42 UniRef50_C4SVT0 tRNA-(Guanine-N1)-methyltransferase n=1 Tax=Yers... 122 3e-27 UniRef50_Q0TIS0 Bacteriophage regulatory protein CII n=25 Tax=En... 111 7e-24 UniRef50_Q7N1J8 Similarities with unknown protein and with YdaT ... 91 9e-18 UniRef50_A7ZND8 Putative uncharacterized protein n=2 Tax=Escheri... 89 5e-17 UniRef50_C0AW01 Putative uncharacterized protein n=2 Tax=Enterob... 86 4e-16 Sequences not found previously or not previously below threshold: UniRef50_P14820 Regulatory protein CII n=2 Tax=root RepID=RPC2_B... 66 4e-10 UniRef50_B4T224 Putative uncharacterized protein n=2 Tax=Salmone... 49 4e-05 UniRef50_D0FSB0 Conserved uncharacterized protein n=1 Tax=Erwini... 46 5e-04 UniRef50_P76165 Uncharacterized protein ydfX n=44 Tax=Escherichi... 45 7e-04 UniRef50_A6XRN6 Putative uncharacterized protein n=1 Tax=Vibrio ... 44 0.002 UniRef50_B5R8N9 Predicted phage protein n=15 Tax=Salmonella ente... 41 0.016 UniRef50_A9I8W7 Putative uncharacterized protein n=1 Tax=Bordete... 40 0.021 UniRef50_A3UVM1 Putative uncharacterized protein n=2 Tax=Vibrio ... 40 0.023 >UniRef50_P76064 Uncharacterized protein ydaT n=20 Tax=Enterobacteriaceae RepID=YDAT_ECOLI Length = 140 Score = 211 bits (538), Expect = 4e-54, Method: Composition-based stats. Identities = 140/140 (100%), Positives = 140/140 (100%) Query: 1 MKIKHEHIESVLFALAAEKGQAWVANAITEEYLRQGGGELPLVPGKDWNNQQNIYHRWLK 60 MKIKHEHIESVLFALAAEKGQAWVANAITEEYLRQGGGELPLVPGKDWNNQQNIYHRWLK Sbjct: 1 MKIKHEHIESVLFALAAEKGQAWVANAITEEYLRQGGGELPLVPGKDWNNQQNIYHRWLK 60 Query: 61 GETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDDAVQA 120 GETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDDAVQA Sbjct: 61 GETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDDAVQA 120 Query: 121 VYRKAHFSGGGSSDDSVIVH 140 VYRKAHFSGGGSSDDSVIVH Sbjct: 121 VYRKAHFSGGGSSDDSVIVH 140 >UniRef50_C8U4T3 Probable phage regulatory protein CII n=2 Tax=Escherichia coli RepID=C8U4T3_ECO10 Length = 145 Score = 184 bits (468), Expect = 6e-46, Method: Composition-based stats. Identities = 85/149 (57%), Positives = 100/149 (67%), Gaps = 13/149 (8%) Query: 1 MKIKHEHIESVLFAL--AAEKGQAWVANAITEEYLRQGGGELPLVPGKDWN-------NQ 51 MKIKHEHI + A G+ +A+ I Y E+ P D + N Sbjct: 1 MKIKHEHIRMAMNAWLLYPRVGRKKIADDIATAYFEL---EMTYPPMHDTSTTEGIGLNI 57 Query: 52 QNIYHRWLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAI 111 QNI+ RWL+ +T EKIQ LIPAIL +LPRELR+ L IFDT+ERRALLAAQEALSTAI Sbjct: 58 QNIF-RWLEKDTPDAVEKIQALIPAILTVLPRELRYHLSIFDTVERRALLAAQEALSTAI 116 Query: 112 DAHDDAVQAVYRKAHFSGGGSSDDSVIVH 140 DAHDDAVQAVYRKA+FS GGSS +SV+VH Sbjct: 117 DAHDDAVQAVYRKAYFSDGGSSGESVVVH 145 >UniRef50_B7UQF8 Probable phage regulatory protein n=95 Tax=Enterobacteriaceae RepID=B7UQF8_ECO27 Length = 141 Score = 173 bits (437), Expect = 2e-42, Method: Composition-based stats. Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 7/144 (4%) Query: 1 MKIKHEHIESVLFALAAEKGQAWVANAITEEYLRQGGGELPLV----PGKDWNNQQNIYH 56 MKIKHEHI + A G+ A IT+ Y G L P N Q I+ Sbjct: 1 MKIKHEHIRMAMNVWAHPDGEKVPAAKITKAYFELGMTFPELYDDSHPEALARNTQKIF- 59 Query: 57 RWLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDD 116 RWL +T EK+Q L+PAI +P L R+ + R ++ ++ L +D D Sbjct: 60 RWLDKDTPDAVEKMQALLPAIEKAMPPLLVARMRSHSSEYYREIVERRDRLVKDVD--DF 117 Query: 117 AVQAVYRKAHFSGGGSSDDSVIVH 140 AV + GG + ++V++H Sbjct: 118 VASAVVLYDQMNRGGPAGNAVVMH 141 >UniRef50_C4SVT0 tRNA-(Guanine-N1)-methyltransferase n=1 Tax=Yersinia frederiksenii ATCC 33641 RepID=C4SVT0_YERFR Length = 146 Score = 122 bits (306), Expect = 3e-27, Method: Composition-based stats. Identities = 43/109 (39%), Positives = 60/109 (55%), Gaps = 5/109 (4%) Query: 1 MKIKHEHIESVLFALAAEKGQAWVANAITEEYLRQGGGELPLVPGKD----WNNQQNIYH 56 MK+KH+ I + L AAE Q VA I + Y GGG+LPL P D NN+Q ++ Sbjct: 1 MKLKHDAICAELRGWAAETKQEIVAAEIAQAYFVLGGGDLPLTPVNDEHATHNNKQRLF- 59 Query: 57 RWLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQE 105 RW+ +T + KI +L PAIL LP E R RL +++ A A ++ Sbjct: 60 RWIDSDTDRSKTKIAELTPAILRALPGERRARLENPNSVNYLAAQALRD 108 >UniRef50_Q0TIS0 Bacteriophage regulatory protein CII n=25 Tax=Enterobacteriaceae RepID=Q0TIS0_ECOL5 Length = 181 Score = 111 bits (277), Expect = 7e-24, Method: Composition-based stats. Identities = 38/111 (34%), Positives = 55/111 (49%), Gaps = 5/111 (4%) Query: 5 HEHIESVLFALAAEKGQAWVANAITEEYLRQGGGELPLVPGKDWNNQQNIYHRWLK--GE 62 HE I + A +A Q VA I EY QGGG + P +Q ++ R+L + Sbjct: 31 HEKIRDAVRAWSAADNQDVVAALIVNEYREQGGGTIDF-PDDVSRARQKLF-RFLDNKFD 88 Query: 63 TKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAIDA 113 ++ R +++L PAILA+LP E R L D+ R L ++ LS A A Sbjct: 89 SEKYRNNVRELTPAILAVLPLEYRGHLVEQDSYMAR-LAEMEKELSEAKQA 138 >UniRef50_Q7N1J8 Similarities with unknown protein and with YdaT protein of Escherichia coli n=5 Tax=Enterobacteriaceae RepID=Q7N1J8_PHOLL Length = 149 Score = 91.4 bits (225), Expect = 9e-18, Method: Composition-based stats. Identities = 33/107 (30%), Positives = 55/107 (51%), Gaps = 12/107 (11%) Query: 1 MKIKHEHIESVLFALAAEKGQAWVANAITEEYL----RQGGGELPLVPGK---DW----N 49 M+ +++ + A AAEKGQ +VA I+ Y R +L + +W N Sbjct: 1 MEQNINALKAEVEAWAAEKGQEYVAIEISRMYFLLCERTVSAKLHPIEINGNANWKAINN 60 Query: 50 NQQNIYHRWLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLE 96 N+Q I+ RWL+ +++ R K+ +L+PAI + LP E + R+ T Sbjct: 61 NRQQIF-RWLRSDSRAARRKVSELLPAIQSALPLERKARINGETTNY 106 >UniRef50_A7ZND8 Putative uncharacterized protein n=2 Tax=Escherichia coli RepID=A7ZND8_ECO24 Length = 158 Score = 88.7 bits (218), Expect = 5e-17, Method: Composition-based stats. Identities = 39/113 (34%), Positives = 51/113 (45%), Gaps = 12/113 (10%) Query: 6 EHIESVLFALAAEKGQAWVANAITEEYLRQG-GGELPLVPGKDW----------NNQQNI 54 E ++ + AA GQ V I + QG EL L +D NN+Q I Sbjct: 5 EELQKEILTWAARAGQELVTIEICRAWFSQGRNDELRLHEFEDADGNVDWRAINNNRQKI 64 Query: 55 YHRWLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEAL 107 + RWL+GET R K Q L + A+LP E R RL A LAA+E + Sbjct: 65 F-RWLRGETTAARRKTQVLASVMKAVLPAERRARLESPGDPVLLATLAAKEGV 116 >UniRef50_C0AW01 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=C0AW01_9ENTR Length = 151 Score = 85.6 bits (210), Expect = 4e-16, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 56/109 (51%), Gaps = 14/109 (12%) Query: 8 IESVLFALAAEKGQAWVANAITEEYLR----QGGGELPLVPGK----DW----NNQQNIY 55 I + + A E+GQ VA I+ YLR Q G L ++ + DW NN+Q I+ Sbjct: 8 IRAEIEDWAVEQGQEHVAIEISRAYLRLVINQEHGRLHVIEDQTGRADWKAINNNRQQIF 67 Query: 56 HRWLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQ 104 RWL+G+++ + KI +L+PAI LP R+ DT A +A Q Sbjct: 68 -RWLRGDSRASQRKIAELMPAIEMALPASRLARVRG-DTKNYLATVAIQ 114 >UniRef50_P14820 Regulatory protein CII n=2 Tax=root RepID=RPC2_BPPH8 Length = 132 Score = 65.9 bits (159), Expect = 4e-10, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 12/104 (11%) Query: 24 VANAITEEYLRQGGGELPLVPGKDWNNQQNIYHRWL--KGETKTQREKIQKLIPAILAIL 81 ++ I EY QGG + P +Q ++ R+L + ++ RE +++L PAI+A+L Sbjct: 1 MSALIINEYREQGGTAISF-PEDISRARQKLF-RFLDNRFDSDQYRENVRELTPAIMAVL 58 Query: 82 PRELRHRLCIFDTLERRALLAAQEALSTAIDAHDDAVQAVYRKA 125 P E R RL + +++A+ +A QAV A Sbjct: 59 PVEFRTRLAPQNDTM--------SLIASAMKECSEAKQAVLLNA 94 >UniRef50_B4T224 Putative uncharacterized protein n=2 Tax=Salmonella enterica subsp. enterica RepID=B4T224_SALNS Length = 115 Score = 49.0 bits (115), Expect = 4e-05, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 26/41 (63%), Gaps = 1/41 (2%) Query: 49 NNQQNIYHRWLKGETKTQREKIQKLIPAILAILPRELRHRL 89 NN+Q I+ RWL+GETK R K + L A+ A LP E +L Sbjct: 27 NNRQQIF-RWLRGETKAARTKTKALAKAMEAALPAERYAQL 66 >UniRef50_D0FSB0 Conserved uncharacterized protein n=1 Tax=Erwinia pyrifoliae RepID=D0FSB0_ERWPY Length = 155 Score = 45.5 bits (106), Expect = 5e-04, Method: Composition-based stats. Identities = 30/122 (24%), Positives = 42/122 (34%), Gaps = 3/122 (2%) Query: 6 EHIESVLFALAAEKGQAWVANAITEEYLR--QGGGELPLVPGKDWNNQQNIYHRWLKG-E 62 + + + L A A G VA + Y +G + N R +G + Sbjct: 8 DVVAAELEAWALMAGWKTVAIRVAAAYHCNCRGNLLPQVDSEAGLRNAVQRLRRIFRGYD 67 Query: 63 TKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDDAVQAVY 122 + L A LA LP E R RL A +AAQE + H A AV Sbjct: 68 GPRYASVAEDLKQAALAALPPERRARLESPGDPSLLATIAAQEGIEAVNAVHLGAPTAVI 127 Query: 123 RK 124 + Sbjct: 128 MR 129 >UniRef50_P76165 Uncharacterized protein ydfX n=44 Tax=Escherichia RepID=YDFX_ECOLI Length = 96 Score = 45.1 bits (105), Expect = 7e-04, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 17/95 (17%) Query: 1 MKIKHEHIESVLFALAAEKG--QAWVANAITEEYLRQ-------------GGGELPLVPG 45 MKI E L A G Q ITE + GG + Sbjct: 1 MKITPEQAREALDAWICRPGMTQEQATILITEAFWALKERPNIDVQRVTYEGGAID--QR 58 Query: 46 KDWNNQQNIYHRWLKGETKTQREKIQKLIPAILAI 80 N+ I+ RW +T+ +REK L+PAI+ Sbjct: 59 ALGVNRVKIFERWKAIDTRDKREKFTALVPAIMEA 93 >UniRef50_A6XRN6 Putative uncharacterized protein n=1 Tax=Vibrio cholerae AM-19226 RepID=A6XRN6_VIBCH Length = 181 Score = 43.6 bits (101), Expect = 0.002, Method: Composition-based stats. Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 12/93 (12%) Query: 8 IESVLFALAAE-KGQAWVANAITEEYLRQG--------GGEL--PLVPGKDWNNQQNIYH 56 I + + + + +A + Y + G GG+L P +P NN QN + Sbjct: 9 IRNAVDEWCCQVDAKRDIAQEVAHHYHKMGLQFDEDAPGGDLLKPAIPANAQNNTQNFF- 67 Query: 57 RWLKGETKTQREKIQKLIPAILAILPRELRHRL 89 RW + + + +PAI++ +P+EL ++ Sbjct: 68 RWNQRSSMESKANFMDTLPAIISAMPKELASKM 100 >UniRef50_B5R8N9 Predicted phage protein n=15 Tax=Salmonella enterica subsp. enterica RepID=B5R8N9_SALG2 Length = 164 Score = 40.5 bits (93), Expect = 0.016, Method: Composition-based stats. Identities = 28/111 (25%), Positives = 39/111 (35%), Gaps = 16/111 (14%) Query: 3 IKHEHIESVLFALAA--EKGQAWVANAITEEYLRQ-----------GGGELPLVPGKDWN 49 I E L + A + Q IT +L Q + + Sbjct: 2 ITPETASQALSSWLAYLQITQETATQLITRAFLEQPARPEIAVHRIERDDGTVDYDAWRR 61 Query: 50 NQQNIYHRWLKGETKTQREKIQKLIPAILAIL---PRELRHRLCIFDTLER 97 N+ NI+ RW K ET EK L PAIL + EL R+ ++E Sbjct: 62 NRINIFQRWRKRETAEHCEKFSALTPAILEAIRKSAPELHKRITAGQSIEY 112 >UniRef50_A9I8W7 Putative uncharacterized protein n=1 Tax=Bordetella petrii DSM 12804 RepID=A9I8W7_BORPD Length = 212 Score = 40.1 bits (92), Expect = 0.021, Method: Composition-based stats. Identities = 26/118 (22%), Positives = 44/118 (37%), Gaps = 12/118 (10%) Query: 8 IESVLFALAAEKG--QAWVANAITEEYLRQGG----GELPLVPGKDWNNQQNI----YHR 57 + + A +G + V + I + GG G L +D + + R Sbjct: 25 VREHVSAWRKAEGWSRETVVDEIVRAHADIGGPVSSGILFDPATRDTFERMKVNADRVFR 84 Query: 58 WLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHD 115 WL ++K +P+ILA +P + R D + R +A + TA D D Sbjct: 85 WLDDDSKDTNLLPANFLPSILAAMPVDRRRHC--LDDILRPMSMAVRLMALTAGDGVD 140 >UniRef50_A3UVM1 Putative uncharacterized protein n=2 Tax=Vibrio RepID=A3UVM1_VIBSP Length = 182 Score = 40.1 bits (92), Expect = 0.023, Method: Composition-based stats. Identities = 18/88 (20%), Positives = 39/88 (44%), Gaps = 11/88 (12%) Query: 8 IESVLFALAAEKGQAWVANAITEEYLRQGGGE---------LPLVPG-KDWNNQQNIYHR 57 + + + A ++ + +A I+ Y + E L + + NN QN++ R Sbjct: 9 MHNAVVAWRSDATKEQIAEYISRFYHKMKIYEEEDCQREHLLKVPSALNNPNNTQNLF-R 67 Query: 58 WLKGETKTQREKIQKLIPAILAILPREL 85 ++ + + + L+PAI+A LP+ Sbjct: 68 YVSRTSTEAKANVMDLLPAIIAALPKAR 95 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P76064 Uncharacterized protein ydaT n=20 Tax=Enterobact... 186 2e-46 UniRef50_C8U4T3 Probable phage regulatory protein CII n=2 Tax=Es... 163 2e-39 UniRef50_B7UQF8 Probable phage regulatory protein n=95 Tax=Enter... 152 3e-36 UniRef50_C4SVT0 tRNA-(Guanine-N1)-methyltransferase n=1 Tax=Yers... 124 8e-28 UniRef50_D0FSB0 Conserved uncharacterized protein n=1 Tax=Erwini... 119 3e-26 UniRef50_A7ZND8 Putative uncharacterized protein n=2 Tax=Escheri... 104 7e-22 UniRef50_Q0TIS0 Bacteriophage regulatory protein CII n=25 Tax=En... 103 2e-21 UniRef50_Q7N1J8 Similarities with unknown protein and with YdaT ... 98 7e-20 UniRef50_C0AW01 Putative uncharacterized protein n=2 Tax=Enterob... 92 4e-18 UniRef50_P14820 Regulatory protein CII n=2 Tax=root RepID=RPC2_B... 86 3e-16 UniRef50_A6XRN6 Putative uncharacterized protein n=1 Tax=Vibrio ... 79 3e-14 UniRef50_P76165 Uncharacterized protein ydfX n=44 Tax=Escherichi... 73 4e-12 UniRef50_B4T224 Putative uncharacterized protein n=2 Tax=Salmone... 51 9e-06 Sequences not found previously or not previously below threshold: UniRef50_B5R8N9 Predicted phage protein n=15 Tax=Salmonella ente... 51 9e-06 UniRef50_A3UVM1 Putative uncharacterized protein n=2 Tax=Vibrio ... 49 4e-05 UniRef50_A4WB54 Bacteriophage regulatory protein CII n=2 Tax=Ent... 48 9e-05 UniRef50_A6T060 Putative uncharacterized protein n=1 Tax=Janthin... 40 0.021 UniRef50_A9I8W7 Putative uncharacterized protein n=1 Tax=Bordete... 40 0.023 UniRef50_A9TQZ2 Predicted protein n=2 Tax=Physcomitrella patens ... 40 0.028 UniRef50_Q6NSZ9 Zinc finger protein 498 n=19 Tax=Eutheria RepID=... 39 0.046 >UniRef50_P76064 Uncharacterized protein ydaT n=20 Tax=Enterobacteriaceae RepID=YDAT_ECOLI Length = 140 Score = 186 bits (471), Expect = 2e-46, Method: Composition-based stats. Identities = 140/140 (100%), Positives = 140/140 (100%) Query: 1 MKIKHEHIESVLFALAAEKGQAWVANAITEEYLRQGGGELPLVPGKDWNNQQNIYHRWLK 60 MKIKHEHIESVLFALAAEKGQAWVANAITEEYLRQGGGELPLVPGKDWNNQQNIYHRWLK Sbjct: 1 MKIKHEHIESVLFALAAEKGQAWVANAITEEYLRQGGGELPLVPGKDWNNQQNIYHRWLK 60 Query: 61 GETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDDAVQA 120 GETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDDAVQA Sbjct: 61 GETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDDAVQA 120 Query: 121 VYRKAHFSGGGSSDDSVIVH 140 VYRKAHFSGGGSSDDSVIVH Sbjct: 121 VYRKAHFSGGGSSDDSVIVH 140 >UniRef50_C8U4T3 Probable phage regulatory protein CII n=2 Tax=Escherichia coli RepID=C8U4T3_ECO10 Length = 145 Score = 163 bits (411), Expect = 2e-39, Method: Composition-based stats. Identities = 83/146 (56%), Positives = 97/146 (66%), Gaps = 7/146 (4%) Query: 1 MKIKHEHIESVLFAL--AAEKGQAWVANAITEEYLRQGGGELPLVP----GKDWNNQQNI 54 MKIKHEHI + A G+ +A+ I Y P+ N QNI Sbjct: 1 MKIKHEHIRMAMNAWLLYPRVGRKKIADDIATAYFELEMTYPPMHDTSTTEGIGLNIQNI 60 Query: 55 YHRWLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAH 114 + RWL+ +T EKIQ LIPAIL +LPRELR+ L IFDT+ERRALLAAQEALSTAIDAH Sbjct: 61 F-RWLEKDTPDAVEKIQALIPAILTVLPRELRYHLSIFDTVERRALLAAQEALSTAIDAH 119 Query: 115 DDAVQAVYRKAHFSGGGSSDDSVIVH 140 DDAVQAVYRKA+FS GGSS +SV+VH Sbjct: 120 DDAVQAVYRKAYFSDGGSSGESVVVH 145 >UniRef50_B7UQF8 Probable phage regulatory protein n=95 Tax=Enterobacteriaceae RepID=B7UQF8_ECO27 Length = 141 Score = 152 bits (384), Expect = 3e-36, Method: Composition-based stats. Identities = 44/144 (30%), Positives = 65/144 (45%), Gaps = 7/144 (4%) Query: 1 MKIKHEHIESVLFALAAEKGQAWVANAITEEYLRQGGGELPL----VPGKDWNNQQNIYH 56 MKIKHEHI + A G+ A IT+ Y G L P N Q I+ Sbjct: 1 MKIKHEHIRMAMNVWAHPDGEKVPAAKITKAYFELGMTFPELYDDSHPEALARNTQKIF- 59 Query: 57 RWLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDD 116 RWL +T EK+Q L+PAI +P L R+ + R ++ ++ L +D D Sbjct: 60 RWLDKDTPDAVEKMQALLPAIEKAMPPLLVARMRSHSSEYYREIVERRDRLVKDVD--DF 117 Query: 117 AVQAVYRKAHFSGGGSSDDSVIVH 140 AV + GG + ++V++H Sbjct: 118 VASAVVLYDQMNRGGPAGNAVVMH 141 >UniRef50_C4SVT0 tRNA-(Guanine-N1)-methyltransferase n=1 Tax=Yersinia frederiksenii ATCC 33641 RepID=C4SVT0_YERFR Length = 146 Score = 124 bits (311), Expect = 8e-28, Method: Composition-based stats. Identities = 47/129 (36%), Positives = 66/129 (51%), Gaps = 8/129 (6%) Query: 1 MKIKHEHIESVLFALAAEKGQAWVANAITEEYLRQGGGELPLVPGKD----WNNQQNIYH 56 MK+KH+ I + L AAE Q VA I + Y GGG+LPL P D NN+Q ++ Sbjct: 1 MKLKHDAICAELRGWAAETKQEIVAAEIAQAYFVLGGGDLPLTPVNDEHATHNNKQRLF- 59 Query: 57 RWLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQE---ALSTAIDA 113 RW+ +T + KI +L PAIL LP E R RL +++ A A ++ A+S Sbjct: 60 RWIDSDTDRSKTKIAELTPAILRALPGERRARLENPNSVNYLAAQALRDFSLAMSAVFLG 119 Query: 114 HDDAVQAVY 122 D Q + Sbjct: 120 CSDMSQKLI 128 >UniRef50_D0FSB0 Conserved uncharacterized protein n=1 Tax=Erwinia pyrifoliae RepID=D0FSB0_ERWPY Length = 155 Score = 119 bits (298), Expect = 3e-26, Method: Composition-based stats. Identities = 33/129 (25%), Positives = 45/129 (34%), Gaps = 5/129 (3%) Query: 1 MKIKH--EHIESVLFALAAEKGQAWVANAITEEYLR--QGGGELPLVPGKDWNNQQNIYH 56 MKI + + + L A A G VA + Y +G + N Sbjct: 1 MKISPPIDVVAAELEAWALMAGWKTVAIRVAAAYHCNCRGNLLPQVDSEAGLRNAVQRLR 60 Query: 57 RWLKG-ETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHD 115 R +G + + L A LA LP E R RL A +AAQE + H Sbjct: 61 RIFRGYDGPRYASVAEDLKQAALAALPPERRARLESPGDPSLLATIAAQEGIEAVNAVHL 120 Query: 116 DAVQAVYRK 124 A AV + Sbjct: 121 GAPTAVIMR 129 >UniRef50_A7ZND8 Putative uncharacterized protein n=2 Tax=Escherichia coli RepID=A7ZND8_ECO24 Length = 158 Score = 104 bits (260), Expect = 7e-22, Method: Composition-based stats. Identities = 40/123 (32%), Positives = 52/123 (42%), Gaps = 12/123 (9%) Query: 4 KHEHIESVLFALAAEKGQAWVANAITEEYLRQG-GGELPLVPGKDW----------NNQQ 52 E ++ + AA GQ V I + QG EL L +D NN+Q Sbjct: 3 NPEELQKEILTWAARAGQELVTIEICRAWFSQGRNDELRLHEFEDADGNVDWRAINNNRQ 62 Query: 53 NIYHRWLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAID 112 I+ RWL+GET R K Q L + A+LP E R RL A LAA+E + Sbjct: 63 KIF-RWLRGETTAARRKTQVLASVMKAVLPAERRARLESPGDPVLLATLAAKEGVEAINA 121 Query: 113 AHD 115 H Sbjct: 122 VHL 124 >UniRef50_Q0TIS0 Bacteriophage regulatory protein CII n=25 Tax=Enterobacteriaceae RepID=Q0TIS0_ECOL5 Length = 181 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 39/123 (31%), Positives = 56/123 (45%), Gaps = 12/123 (9%) Query: 5 HEHIESVLFALAAEKGQAWVANAITEEYLRQGGGELPLVPGKDWNNQQNIYHRWLK--GE 62 HE I + A +A Q VA I EY QGGG + P +Q ++ R+L + Sbjct: 31 HEKIRDAVRAWSAADNQDVVAALIVNEYREQGGGTIDF-PDDVSRARQKLF-RFLDNKFD 88 Query: 63 TKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDDAVQAVY 122 ++ R +++L PAILA+LP E R L D+ R L+ +A QAV Sbjct: 89 SEKYRNNVRELTPAILAVLPLEYRGHLVEQDSYMAR--------LAEMEKELSEAKQAVI 140 Query: 123 RKA 125 A Sbjct: 141 LNA 143 >UniRef50_Q7N1J8 Similarities with unknown protein and with YdaT protein of Escherichia coli n=5 Tax=Enterobacteriaceae RepID=Q7N1J8_PHOLL Length = 149 Score = 98.4 bits (243), Expect = 7e-20, Method: Composition-based stats. Identities = 35/127 (27%), Positives = 59/127 (46%), Gaps = 13/127 (10%) Query: 1 MKIKHEHIESVLFALAAEKGQAWVANAITEEYL----RQGGGELPLVPGKDW-------N 49 M+ +++ + A AAEKGQ +VA I+ Y R +L + N Sbjct: 1 MEQNINALKAEVEAWAAEKGQEYVAIEISRMYFLLCERTVSAKLHPIEINGNANWKAINN 60 Query: 50 NQQNIYHRWLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALST 109 N+Q I+ RWL+ +++ R K+ +L+PAI + LP E + R+ T +A +E + Sbjct: 61 NRQQIF-RWLRSDSRAARRKVSELLPAIQSALPLERKARINGETT-NYLISVAIREFTAV 118 Query: 110 AIDAHDD 116 I Sbjct: 119 IIAILLG 125 >UniRef50_C0AW01 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=C0AW01_9ENTR Length = 151 Score = 92.2 bits (227), Expect = 4e-18, Method: Composition-based stats. Identities = 37/116 (31%), Positives = 54/116 (46%), Gaps = 14/116 (12%) Query: 1 MKIKHEHIESVLFALAAEKGQAWVANAITEEYLR----QGGGELPLVPG--------KDW 48 M I + + A E+GQ VA I+ YLR Q G L ++ Sbjct: 1 MNFDINIIRAEIEDWAVEQGQEHVAIEISRAYLRLVINQEHGRLHVIEDQTGRADWKAIN 60 Query: 49 NNQQNIYHRWLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQ 104 NN+Q I+ RWL+G+++ + KI +L+PAI LP R+ DT A +A Q Sbjct: 61 NNRQQIF-RWLRGDSRASQRKIAELMPAIEMALPASRLARVRG-DTKNYLATVAIQ 114 >UniRef50_P14820 Regulatory protein CII n=2 Tax=root RepID=RPC2_BPPH8 Length = 132 Score = 86.4 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 29/104 (27%), Positives = 50/104 (48%), Gaps = 12/104 (11%) Query: 24 VANAITEEYLRQGGGELPLVPGKDWNNQQNIYHRWL--KGETKTQREKIQKLIPAILAIL 81 ++ I EY QGG + P +Q ++ R+L + ++ RE +++L PAI+A+L Sbjct: 1 MSALIINEYREQGGTAISF-PEDISRARQKLF-RFLDNRFDSDQYRENVRELTPAIMAVL 58 Query: 82 PRELRHRLCIFDTLERRALLAAQEALSTAIDAHDDAVQAVYRKA 125 P E R RL + +++A+ +A QAV A Sbjct: 59 PVEFRTRLAPQNDTMSL--------IASAMKECSEAKQAVLLNA 94 >UniRef50_A6XRN6 Putative uncharacterized protein n=1 Tax=Vibrio cholerae AM-19226 RepID=A6XRN6_VIBCH Length = 181 Score = 79.5 bits (194), Expect = 3e-14, Method: Composition-based stats. Identities = 28/137 (20%), Positives = 52/137 (37%), Gaps = 22/137 (16%) Query: 8 IESVLFALAAE-KGQAWVANAITEEYLRQG--------GGEL--PLVPGKDWNNQQNIYH 56 I + + + + +A + Y + G GG+L P +P NN QN + Sbjct: 9 IRNAVDEWCCQVDAKRDIAQEVAHHYHKMGLQFDEDAPGGDLLKPAIPANAQNNTQNFF- 67 Query: 57 RWLKGETKTQREKIQKLIPAILAILPRELRHRLCIFDTLERRALLAAQEALSTAID---- 112 RW + + + +PAI++ +P+EL ++ ++A E D Sbjct: 68 RWNQRSSMESKANFMDTLPAIISAMPKELASKMLNRFLNPLGFTVSAVERRVERFDRDEL 127 Query: 113 ------AHDDAVQAVYR 123 H +A +AV Sbjct: 128 LAYFGKEHFEATRAVLL 144 >UniRef50_P76165 Uncharacterized protein ydfX n=44 Tax=Escherichia RepID=YDFX_ECOLI Length = 96 Score = 72.5 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 25/95 (26%), Positives = 34/95 (35%), Gaps = 17/95 (17%) Query: 1 MKIKHEHIESVLFALAAEKG--QAWVANAITEEYLRQ-------------GGGELPLVPG 45 MKI E L A G Q ITE + GG + Sbjct: 1 MKITPEQAREALDAWICRPGMTQEQATILITEAFWALKERPNIDVQRVTYEGGAID--QR 58 Query: 46 KDWNNQQNIYHRWLKGETKTQREKIQKLIPAILAI 80 N+ I+ RW +T+ +REK L+PAI+ Sbjct: 59 ALGVNRVKIFERWKAIDTRDKREKFTALVPAIMEA 93 >UniRef50_B4T224 Putative uncharacterized protein n=2 Tax=Salmonella enterica subsp. enterica RepID=B4T224_SALNS Length = 115 Score = 51.4 bits (121), Expect = 9e-06, Method: Composition-based stats. Identities = 25/85 (29%), Positives = 39/85 (45%), Gaps = 3/85 (3%) Query: 33 LRQGGGELPLVPGKDWNNQQNIYHRWLKGETKTQREKIQKLIPAILAILPRELRHRLCIF 92 + + NN+Q I+ RWL+GETK R K + L A+ A LP E +L + Sbjct: 11 HQMEDSKGNADWRAINNNRQQIF-RWLRGETKAARTKTKALAKAMEAALPAERYAQLGM- 68 Query: 93 DTLERRALLAAQEALSTAIDAHDDA 117 T + +A ++ + I DA Sbjct: 69 -TAQHLICIAIRDFAAAIIALLLDA 92 >UniRef50_B5R8N9 Predicted phage protein n=15 Tax=Salmonella enterica subsp. enterica RepID=B5R8N9_SALG2 Length = 164 Score = 51.4 bits (121), Expect = 9e-06, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 41/119 (34%), Gaps = 16/119 (13%) Query: 3 IKHEHIESVLFAL--AAEKGQAWVANAITEEYLRQGG---GELPLVPGKDW--------N 49 I E L + + Q IT +L Q + + D Sbjct: 2 ITPETASQALSSWLAYLQITQETATQLITRAFLEQPARPEIAVHRIERDDGTVDYDAWRR 61 Query: 50 NQQNIYHRWLKGETKTQREKIQKLIPAILAIL---PRELRHRLCIFDTLERRALLAAQE 105 N+ NI+ RW K ET EK L PAIL + EL R+ ++E ++ Sbjct: 62 NRINIFQRWRKRETAEHCEKFSALTPAILEAIRKSAPELHKRITAGQSIEYLLSQLLKK 120 >UniRef50_A3UVM1 Putative uncharacterized protein n=2 Tax=Vibrio RepID=A3UVM1_VIBSP Length = 182 Score = 49.4 bits (116), Expect = 4e-05, Method: Composition-based stats. Identities = 16/91 (17%), Positives = 36/91 (39%), Gaps = 11/91 (12%) Query: 7 HIESVLFALAAEKGQAWVANAITEEYLRQ----------GGGELPLVPGKDWNNQQNIYH 56 + + + A ++ + +A I+ Y + + NN QN++ Sbjct: 8 VMHNAVVAWRSDATKEQIAEYISRFYHKMKIYEEEDCQREHLLKVPSALNNPNNTQNLF- 66 Query: 57 RWLKGETKTQREKIQKLIPAILAILPRELRH 87 R++ + + + L+PAI+A LP+ Sbjct: 67 RYVSRTSTEAKANVMDLLPAIIAALPKARAT 97 >UniRef50_A4WB54 Bacteriophage regulatory protein CII n=2 Tax=Enterobacteriaceae RepID=A4WB54_ENT38 Length = 184 Score = 47.9 bits (112), Expect = 9e-05, Method: Composition-based stats. Identities = 32/129 (24%), Positives = 56/129 (43%), Gaps = 23/129 (17%) Query: 4 KHEHIESVLFAL---AAEKGQAWVANAITEEYLRQGGGELPLVPGKDWNNQQNIYHRWLK 60 KH + + + + Q +A + E++ + GG + + N+QN++ R+LK Sbjct: 32 KHRSVLAAVREWESILPGQAQEKIAQLVAEQWKKGGGRGITV-------NKQNLF-RYLK 83 Query: 61 GE--TKTQREKIQKLIPAILAILPRE--LRHRLCIFDTLERRALLAAQEALSTAIDAHDD 116 E ++ I +L AI+A LP E +H L T E +++AI + Sbjct: 84 NEGGSEKYTAYIMQLSDAIVAALPVEIGRKHGLGNARTEV--------ELVASAIKECSE 135 Query: 117 AVQAVYRKA 125 A QA A Sbjct: 136 AHQAKLLGA 144 >UniRef50_A6T060 Putative uncharacterized protein n=1 Tax=Janthinobacterium sp. Marseille RepID=A6T060_JANMA Length = 198 Score = 40.2 bits (92), Expect = 0.021, Method: Composition-based stats. Identities = 20/88 (22%), Positives = 33/88 (37%), Gaps = 10/88 (11%) Query: 8 IESVLFALAAEKGQ--AWVANAITEEYLRQGGGELPLVPGKDWN-------NQQNIYHRW 58 + + A +G V I E + GG + + N Q ++ RW Sbjct: 13 VREHVIAWRKAEGWSRETVTQVIVEMHGLVGGVTGIVFEKNPSDPFTERETNAQRLF-RW 71 Query: 59 LKGETKTQREKIQKLIPAILAILPRELR 86 L E+K+ + P+IL +P E R Sbjct: 72 LDDESKSTNLLPMCMTPSILLAMPMERR 99 >UniRef50_A9I8W7 Putative uncharacterized protein n=1 Tax=Bordetella petrii DSM 12804 RepID=A9I8W7_BORPD Length = 212 Score = 40.2 bits (92), Expect = 0.023, Method: Composition-based stats. Identities = 22/117 (18%), Positives = 39/117 (33%), Gaps = 17/117 (14%) Query: 7 HIESVLFALAAEKGQ--AWVANAITEEYLRQGG---GELPLVP------GKDWNNQQNIY 55 + + A +G V + I + GG + P + N ++ Sbjct: 24 VVREHVSAWRKAEGWSRETVVDEIVRAHADIGGPVSSGILFDPATRDTFERMKVNADRVF 83 Query: 56 HRWLKGETKTQREKIQKLIPAILAILPRELRHR-----LCIFDTLERRALLAAQEAL 107 RWL ++K +P+ILA +P + R L R L A + + Sbjct: 84 -RWLDDDSKDTNLLPANFLPSILAAMPVDRRRHCLDDILRPMSMAVRLMALTAGDGV 139 >UniRef50_A9TQZ2 Predicted protein n=2 Tax=Physcomitrella patens subsp. patens RepID=A9TQZ2_PHYPA Length = 1275 Score = 39.8 bits (91), Expect = 0.028, Method: Composition-based stats. Identities = 22/105 (20%), Positives = 38/105 (36%), Gaps = 5/105 (4%) Query: 21 QAWVANAITEEYLRQGGGELPLVPGKDWNNQQNIYHRWLKGETKTQREKIQKLIPAILAI 80 Q ++ ++ + G L + + NQ + R L+ + + KL+ Sbjct: 479 QESASDPTSQAWFEDVKGRLVMQMEEKHRNQIETFERHLRAKDERLSAFRSKLL-----T 533 Query: 81 LPRELRHRLCIFDTLERRALLAAQEALSTAIDAHDDAVQAVYRKA 125 + EL FD L A A + L+ HDD V K+ Sbjct: 534 METELAQSRTEFDDLGCDAAAAVDDFLTAVKSEHDDVPSQVVGKS 578 >UniRef50_Q6NSZ9 Zinc finger protein 498 n=19 Tax=Eutheria RepID=ZN498_HUMAN Length = 544 Score = 39.0 bits (89), Expect = 0.046, Method: Composition-based stats. Identities = 22/91 (24%), Positives = 36/91 (39%), Gaps = 1/91 (1%) Query: 20 GQAWVANAITEEYLRQGGGELPLVPGKDWNNQQNIYHRWLKGETKTQREKIQKL-IPAIL 78 G+ + RQ + P + Q + RWL+ E T+ + ++ L + L Sbjct: 32 GREDPSPETFRLRFRQFRYQEAAGPQEALRELQELCRRWLRPELHTKEQILELLVLEQFL 91 Query: 79 AILPRELRHRLCIFDTLERRALLAAQEALST 109 ILPRE + +AL A E L+ Sbjct: 92 TILPREFYAWIREHGPESGKALAAMVEDLTE 122 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.309 0.121 0.303 Lambda K H 0.267 0.0365 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 651,888,676 Number of Sequences: 3077464 Number of extensions: 19431822 Number of successful extensions: 71160 Number of sequences better than 1.0e-01: 20 Number of HSP's better than 0.1 without gapping: 28 Number of HSP's successfully gapped in prelim test: 17 Number of HSP's that attempted gapping in prelim test: 71090 Number of HSP's gapped (non-prelim): 46 length of query: 140 length of database: 1,040,396,356 effective HSP length: 104 effective length of query: 36 effective length of database: 720,340,100 effective search space: 25932243600 effective search space used: 25932243600 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 87 (38.3 bits)