 |
| Job Description | P0ACN2 | | Confidence | 40.37% | Date | Thu Jan 5 11:18:35 GMT 2012 |
| Rank | 267 | Aligned Residues | 46 |
| % Identity | 4% | Template | d1or7a1 |
| SCOP info | DNA/RNA-binding 3-helical bundle
| Sigma3 and sigma4 domains of RNA polymerase sigma factors
| Sigma4 domain
|
| Resolution | 2.00 |
|
|   |   |
22 | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . |
| Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |
| Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| Query Sequence |   |
S | R | E | V | L | K | H | V | T | S | R | W | G | V | L | I | L | V | A | L | R | E | G | T | H | R | F | S | D | L | R | R | K | I | G | G | V | S | E | K | M | L | A | Q | S | L | Q | A |
| Query Conservation |   |
|   |   |   |
|   |
|
|
|   |
|
|   |   |   |
|
|   |   |
|   |   |
|   |   |
|
|   |
|
|   |
|   |
|   |
|
|
|   |   |   |
|
|   |
|
|   |   |
| Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
| Template Conservation |   |
|   |   |
|
|   |   |
|   |   |   |   |
|   |
|   |   |
|   |   |   |   |
|   |
| . |   |   |
|
|
|   |   |
| . |
|   |
|   |   |
|
|   |   |   |
|   |
|
| Template Sequence |   |
V | F | R | T | I | E | S | L | P | E | D | L | R | M | A | I | T | L | R | E | L | D | G | L | S | . |
Y | E | E | I | A | A | I | M | . |
D | C | P | V | G | T | V | R | S | R | I | F | R |
| Template Known Secondary structure |   |
 |  |  |  |  |  |  | S |
|  |  |  |  |  |  |  |  |  |  |  | T | T |
|
|
| . |  |  |  |  |  |  |  | T | . | T | S |
|  |  |  |  |  |  |  |  |  |  |
| Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
| . |  |  |  |  |  |  |  |  | . |
|
|
|  |  |  |  |  |  |  |  |  |  |
| Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|   |   |
131 | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | |
. | . | . | . | 160 | . | . | . | |
. | . | . | . | . | . | 170 | . | . | . | . | . | . |
|   |
No model constructed - rank, confidence too low
Phyre is for academic use only
| Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
| Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
|   |
|
|
|