Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	M	N	F	N	N	V	F	R	W	H	L	P	F	L	F	L	V	L	L	T	F	R	A	A	A	A	D	T	L	L	I	L	G	D	S	L	S	A	G	Y	R	M	S	A	S	A	A	W	P	A	L	L	N	D	K	W	Q	S	K
Secondary structure
SS confidence
Disorder		?	?	?																	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		T	S	V	V	N	A	S	I	S	G	D	T	S	Q	Q	G	L	A	R	L	P	A	L	L	K	Q	H	Q	P	R	W	V	L	V	E	L	G	G	N	D	G	L	R	G	F	Q	P	Q	Q	T	E	Q	T	L	R	Q	I	L	Q	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		V	K	A	A	N	A	E	P	L	L	M	Q	I	R	L	P	A	N	Y	G	R	R	Y	N	E	A	F	S	A	I	Y	P	K	L	A	K	E	F	D	V	P	L	L	P	F	F	M	E	E	V	Y	L	K	P	Q	W	M	Q	D	D
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
Sequence		G	I	H	P	N	R	D	A	Q	P	F	I	A	D	W	M	A	K	Q	L	Q	P	L	V	N	H	D	S
Secondary structure
SS confidence
Disorder																									?	?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1jrl chain A Region: 27 - 205 Aligned: 178 Modelled: 179 Confidence: 100.0% Identity: 99% Fold: Flavodoxin-like Superfamily: SGNH hydrolase Family: TAP-like Phyre2 PDB 3hp4 chain A Region: 27 - 206 Aligned: 179 Modelled: 180 Confidence: 100.0% Identity: 44% PDB header:hydrolase Chain: A: PDB Molecule:gdsl-esterase; PDBTitle: crystal structure of psychrotrophic esterase esta from2 pseudoalteromonas sp. 643a inhibited by monoethylphosphonate Phyre2 PDB 2o14 chain A Region: 22 - 203 Aligned: 182 Modelled: 182 Confidence: 100.0% Identity: 23% PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yxim; PDBTitle: x-ray crystal structure of protein yxim_bacsu from bacillus2 subtilis. northeast structural genomics consortium target3 sr595 Phyre2 PDB 3mil chain A Region: 28 - 206 Aligned: 179 Modelled: 179 Confidence: 100.0% Identity: 22% PDB header:hydrolase Chain: A: PDB Molecule:isoamyl acetate-hydrolyzing esterase; PDBTitle: crystal structure of isoamyl acetate-hydrolyzing esterase from2 saccharomyces cerevisiae Phyre2 PDB 3p94 chain A Region: 22 - 205 Aligned: 175 Modelled: 184 Confidence: 100.0% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:gdsl-like lipase; PDBTitle: crystal structure of a gdsl-like lipase (bdi_0976) from2 parabacteroides distasonis atcc 8503 at 1.93 a resolution Phyre2 PDB 3rjt chain A Region: 22 - 203 Aligned: 182 Modelled: 182 Confidence: 100.0% Identity: 21% PDB header:hydrolase Chain: A: PDB Molecule:lipolytic protein g-d-s-l family; PDBTitle: crystal structure of lipolytic protein g-d-s-l family from2 alicyclobacillus acidocaldarius subsp. acidocaldarius dsm 446 Phyre2 PDB 1yzf chain A domain 1 Region: 28 - 205 Aligned: 178 Modelled: 178 Confidence: 100.0% Identity: 18% Fold: Flavodoxin-like Superfamily: SGNH hydrolase Family: TAP-like Phyre2 PDB 2vpt chain A Region: 29 - 205 Aligned: 177 Modelled: 172 Confidence: 100.0% Identity: 18% PDB header:hydrolase Chain: A: PDB Molecule:lipolytic enzyme; PDBTitle: clostridium thermocellum family 3 carbohydrate esterase Phyre2 PDB 3bzw chain A domain 1 Region: 20 - 203 Aligned: 182 Modelled: 184 Confidence: 100.0% Identity: 17% Fold: Flavodoxin-like Superfamily: SGNH hydrolase Family: BT2961-like Phyre2 PDB 3bzw chain A Region: 20 - 203 Aligned: 182 Modelled: 184 Confidence: 100.0% Identity: 17% PDB header:hydrolase Chain: A: PDB Molecule:putative lipase; PDBTitle: crystal structure of a putative lipase from bacteroides2 thetaiotaomicron Phyre2 PDB 2wao chain A Region: 19 - 205 Aligned: 186 Modelled: 187 Confidence: 99.9% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase e; PDBTitle: structure of a family two carbohydrate esterase from2 clostridium thermocellum in complex with cellohexaose Phyre2 PDB 1k7c chain A Region: 29 - 202 Aligned: 172 Modelled: 174 Confidence: 99.9% Identity: 18% Fold: Flavodoxin-like Superfamily: SGNH hydrolase Family: Rhamnogalacturonan acetylesterase Phyre2 PDB 2waa chain A Region: 20 - 205 Aligned: 181 Modelled: 186 Confidence: 99.9% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:xylan esterase, putative, axe2c; PDBTitle: structure of a family two carbohydrate esterase from2 cellvibrio japonicus Phyre2 PDB 2o14 chain A domain 2 Region: 26 - 203 Aligned: 178 Modelled: 178 Confidence: 99.9% Identity: 24% Fold: Flavodoxin-like Superfamily: SGNH hydrolase Family: YxiM C-terminal domain-like Phyre2 PDB 3dc7 chain A domain 1 Region: 28 - 202 Aligned: 173 Modelled: 175 Confidence: 99.9% Identity: 19% Fold: Flavodoxin-like Superfamily: SGNH hydrolase Family: BT2961-like Phyre2 PDB 3dc7 chain B Region: 28 - 202 Aligned: 173 Modelled: 174 Confidence: 99.9% Identity: 21% PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative uncharacterized protein lp_3323; PDBTitle: crystal structure of the protein q88sr8 from lactobacillus plantarum.2 northeast structural genomics consortium target lpr109. Phyre2 PDB 1vjg chain A Region: 24 - 198 Aligned: 175 Modelled: 175 Confidence: 99.9% Identity: 20% Fold: Flavodoxin-like Superfamily: SGNH hydrolase Family: Hypothetical protein alr1529 Phyre2 PDB 1es9 chain A Region: 26 - 204 Aligned: 170 Modelled: 179 Confidence: 99.9% Identity: 20% Fold: Flavodoxin-like Superfamily: SGNH hydrolase Family: Acetylhydrolase Phyre2 PDB 1fxw chain F Region: 26 - 204 Aligned: 170 Modelled: 179 Confidence: 99.9% Identity: 19% Fold: Flavodoxin-like Superfamily: SGNH hydrolase Family: Acetylhydrolase Phyre2 PDB 2q0q chain C Region: 27 - 204 Aligned: 173 Modelled: 177 Confidence: 99.9% Identity: 24% PDB header:hydrolase Chain: C: PDB Molecule:aryl esterase; PDBTitle: structure of the native m. smegmatis aryl esterase Phyre2 1 d1jrla_ 2 c3hp4A_ 3 c2o14A_ 4 c3milA_ 5 c3p94A_ 6 c3rjtA_ 7 d1yzfa1 8 c2vptA_ 9 d3bzwa1 10 c3bzwA_ 11 c2waoA_ 12 d1k7ca_ 13 c2waaA_ 14 d2o14a2 15 d3dc7a1 16 c3dc7B_ 17 d1vjga_ 18 d1es9a_ 19 d1fxwf_ 20 c2q0qC_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1jrla_ 100.0 99 Fold:Flavodoxin-like Superfamily:SGNH hydrolase Family:TAP-like 2 c3hp4A_ 100.0 44 PDB header:hydrolase Chain: A: PDB Molecule:gdsl-esterase; PDBTitle: crystal structure of psychrotrophic esterase esta from2 pseudoalteromonas sp. 643a inhibited by monoethylphosphonate 3 c2o14A_ 100.0 23 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein yxim; PDBTitle: x-ray crystal structure of protein yxim_bacsu from bacillus2 subtilis. northeast structural genomics consortium target3 sr595 4 c3milA_ 100.0 22 PDB header:hydrolase Chain: A: PDB Molecule:isoamyl acetate-hydrolyzing esterase; PDBTitle: crystal structure of isoamyl acetate-hydrolyzing esterase from2 saccharomyces cerevisiae 5 c3p94A_ 100.0 15 PDB header:hydrolase Chain: A: PDB Molecule:gdsl-like lipase; PDBTitle: crystal structure of a gdsl-like lipase (bdi_0976) from2 parabacteroides distasonis atcc 8503 at 1.93 a resolution 6 c3rjtA_ 100.0 21 PDB header:hydrolase Chain: A: PDB Molecule:lipolytic protein g-d-s-l family; PDBTitle: crystal structure of lipolytic protein g-d-s-l family from2 alicyclobacillus acidocaldarius subsp. acidocaldarius dsm 446 7 d1yzfa1 100.0 18 Fold:Flavodoxin-like Superfamily:SGNH hydrolase Family:TAP-like 8 c2vptA_ 100.0 18 PDB header:hydrolase Chain: A: PDB Molecule:lipolytic enzyme; PDBTitle: clostridium thermocellum family 3 carbohydrate esterase 9 d3bzwa1 100.0 17 Fold:Flavodoxin-like Superfamily:SGNH hydrolase Family:BT2961-like 10 c3bzwA_ 100.0 17 PDB header:hydrolase Chain: A: PDB Molecule:putative lipase; PDBTitle: crystal structure of a putative lipase from bacteroides2 thetaiotaomicron 11 c2waoA_ 99.9 15 PDB header:hydrolase Chain: A: PDB Molecule:endoglucanase e; PDBTitle: structure of a family two carbohydrate esterase from2 clostridium thermocellum in complex with cellohexaose 12 d1k7ca_ 99.9 18 Fold:Flavodoxin-like Superfamily:SGNH hydrolase Family:Rhamnogalacturonan acetylesterase 13 c2waaA_ 99.9 15 PDB header:hydrolase Chain: A: PDB Molecule:xylan esterase, putative, axe2c; PDBTitle: structure of a family two carbohydrate esterase from2 cellvibrio japonicus 14 d2o14a2 99.9 24 Fold:Flavodoxin-like Superfamily:SGNH hydrolase Family:YxiM C-terminal domain-like 15 d3dc7a1 99.9 19 Fold:Flavodoxin-like Superfamily:SGNH hydrolase Family:BT2961-like 16 c3dc7B_ 99.9 21 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative uncharacterized protein lp_3323; PDBTitle: crystal structure of the protein q88sr8 from lactobacillus plantarum.2 northeast structural genomics consortium target lpr109. 17 d1vjga_ 99.9 20 Fold:Flavodoxin-like Superfamily:SGNH hydrolase Family:Hypothetical protein alr1529 18 d1es9a_ 99.9 20 Fold:Flavodoxin-like Superfamily:SGNH hydrolase Family:Acetylhydrolase 19 d1fxwf_ 99.9 19 Fold:Flavodoxin-like Superfamily:SGNH hydrolase Family:Acetylhydrolase 20 c2q0qC_ 99.9 24 PDB header:hydrolase Chain: C: PDB Molecule:aryl esterase; PDBTitle: structure of the native m. smegmatis aryl esterase 21 c3dciB_ not modelled 99.9 21 PDB header:hydrolase Chain: B: PDB Molecule:arylesterase; PDBTitle: the structure of a putative arylesterase from agrobacterium2 tumefaciens str. c58 22 d2hsja1 not modelled 99.9 22 Fold:Flavodoxin-like Superfamily:SGNH hydrolase Family:Acetylhydrolase 23 c2w9xA_ not modelled 99.9 16 PDB header:hydrolase Chain: A: PDB Molecule:putative acetyl xylan esterase; PDBTitle: the active site of a carbohydrate esterase displays2 divergent3 catalytic and non-catalytic binding functions 24 d1esca_ not modelled 99.9 21 Fold:Flavodoxin-like Superfamily:SGNH hydrolase Family:Esterase 25 c3kvnA_ not modelled 98.7 24 PDB header:hydrolase Chain: A: PDB Molecule:esterase esta; PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa 26 d2apja1 not modelled 97.6 11 Fold:Flavodoxin-like Superfamily:SGNH hydrolase Family:Putative acetylxylan esterase-like 27 c3bmaC_ not modelled 97.0 9 PDB header:ligase Chain: C: PDB Molecule:d-alanyl-lipoteichoic acid synthetase; PDBTitle: crystal structure of d-alanyl-lipoteichoic acid synthetase from2 streptococcus pneumoniae r6 28 c3pt5A_ not modelled 96.6 14 PDB header:hydrolase Chain: A: PDB Molecule:nans (yjhs), a 9-o-acetyl n-acetylneuraminic acid esterase; PDBTitle: crystal structure of nans 29 d1zmba1 not modelled 96.3 14 Fold:Flavodoxin-like Superfamily:SGNH hydrolase Family:Putative acetylxylan esterase-like 30 c3nvbA_ not modelled 88.0 7 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of n-terminal part of the protein bf1531 from2 bacteroides fragilis containing phosphatase domain complexed with mg3 and tungstate 31 d1jlja_ not modelled 87.7 14 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 32 d2f7wa1 not modelled 85.9 14 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 33 c2pjkA_ not modelled 84.9 9 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:178aa long hypothetical molybdenum cofactor PDBTitle: structure of hypothetical molybdenum cofactor biosynthesis2 protein b from sulfolobus tokodaii 34 d1mkza_ not modelled 82.9 15 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 35 c3q9cF_ not modelled 81.5 12 PDB header:hydrolase Chain: F: PDB Molecule:acetylpolyamine amidohydrolase; PDBTitle: crystal structure of h159a apah complexed with n8-acetylspermidine 36 c3menC_ not modelled 80.4 18 PDB header:hydrolase Chain: C: PDB Molecule:acetylpolyamine aminohydrolase; PDBTitle: crystal structure of acetylpolyamine aminohydrolase from burkholderia2 pseudomallei, iodide soak 37 c1vcnA_ not modelled 77.7 13 PDB header:ligase Chain: A: PDB Molecule:ctp synthetase; PDBTitle: crystal structure of t.th. hb8 ctp synthetase complex with sulfate2 anion 38 d1uuya_ not modelled 77.4 17 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 39 d1vcoa2 not modelled 77.2 13 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 40 c2is8A_ not modelled 76.6 15 PDB header:structural protein Chain: A: PDB Molecule:molybdopterin biosynthesis enzyme, moab; PDBTitle: crystal structure of the molybdopterin biosynthesis enzyme moab2 (ttha0341) from thermus theromophilus hb8 41 d1y5ea1 not modelled 72.4 14 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 42 c3maxB_ not modelled 71.7 21 PDB header:hydrolase Chain: B: PDB Molecule:histone deacetylase 2; PDBTitle: crystal structure of human hdac2 complexed with an n-(2-aminophenyl)2 benzamide 43 d1t64a_ not modelled 70.8 18 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Histone deacetylase, HDAC 44 c3ew8A_ not modelled 70.8 18 PDB header:hydrolase Chain: A: PDB Molecule:histone deacetylase 8; PDBTitle: crystal structure analysis of human hdac8 d101l variant 45 d2csua1 not modelled 69.8 9 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 46 c3nvaB_ not modelled 69.5 12 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: dimeric form of ctp synthase from sulfolobus solfataricus 47 d1c3pa_ not modelled 55.9 16 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Histone deacetylase, HDAC 48 c3qi7A_ not modelled 55.9 10 PDB header:transcription Chain: A: PDB Molecule:putative transcriptional regulator; PDBTitle: crystal structure of a putative transcriptional regulator2 (yp_001089212.1) from clostridium difficile 630 at 1.86 a resolution 49 c2bg5C_ not modelled 47.2 8 PDB header:transferase Chain: C: PDB Molecule:phosphoenolpyruvate-protein kinase; PDBTitle: crystal structure of the phosphoenolpyruvate-binding enzyme2 i-domain from the thermoanaerobacter tengcongensis pep:3 sugar phosphotransferase system (pts) 50 c2g4rB_ not modelled 44.1 15 PDB header:biosynthetic protein Chain: B: PDB Molecule:molybdopterin biosynthesis mog protein; PDBTitle: anomalous substructure of moga 51 c1y8aA_ not modelled 40.7 45 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein af1437; PDBTitle: structure of gene product af1437 from archaeoglobus fulgidus 52 d2g2ca1 not modelled 40.5 16 Fold:Molybdenum cofactor biosynthesis proteins Superfamily:Molybdenum cofactor biosynthesis proteins Family:MogA-like 53 c2hwgA_ not modelled 35.7 18 PDB header:transferase Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase; PDBTitle: structure of phosphorylated enzyme i of the2 phosphoenolpyruvate:sugar phosphotransferase system 54 d1iuka_ not modelled 35.3 20 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 55 c3kbqA_ not modelled 34.6 11 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:protein ta0487; PDBTitle: the crystal structure of the protein cina with unknown function from2 thermoplasma acidophilum 56 c2hroA_ not modelled 28.1 15 PDB header:transferase Chain: A: PDB Molecule:phosphoenolpyruvate-protein phosphotransferase; PDBTitle: structure of the full-lenght enzyme i of the pts system from2 staphylococcus carnosus 57 d2vo1a1 not modelled 25.8 15 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 58 d3c10a1 not modelled 25.8 18 Fold:Arginase/deacetylase Superfamily:Arginase/deacetylase Family:Histone deacetylase, HDAC 59 c2ohoA_ not modelled 25.5 14 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: structural basis for glutamate racemase inhibitor 60 c3rfqC_ not modelled 24.8 11 PDB header:biosynthetic protein Chain: C: PDB Molecule:pterin-4-alpha-carbinolamine dehydratase moab2; PDBTitle: crystal structure of pterin-4-alpha-carbinolamine dehydratase moab22 from mycobacterium marinum 61 d1xpja_ not modelled 24.6 11 Fold:HAD-like Superfamily:HAD-like Family:Hypothetical protein VC0232 62 d1s1ma2 not modelled 24.3 11 Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:Nitrogenase iron protein-like 63 c3fxtB_ not modelled 23.7 16 PDB header:gene regulation Chain: B: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the n-terminal domain of human nudt6 64 c2ad5B_ not modelled 22.3 11 PDB header:ligase Chain: B: PDB Molecule:ctp synthase; PDBTitle: mechanisms of feedback regulation and drug resistance of ctp2 synthetases: structure of the e. coli ctps/ctp complex at 2.8-3 angstrom resolution. 65 c1hyhA_ not modelled 20.2 16 PDB header:oxidoreductase (choh(d)-nad+(a)) Chain: A: PDB Molecule:l-2-hydroxyisocaproate dehydrogenase; PDBTitle: crystal structure of l-2-hydroxyisocaproate dehydrogenase from2 lactobacillus confusus at 2.2 angstroms resolution-an example of3 strong asymmetry between subunits 66 c2ps3A_ not modelled 19.1 15 PDB header:metal transport Chain: A: PDB Molecule:high-affinity zinc uptake system protein znua; PDBTitle: structure and metal binding properties of znua, a2 periplasmic zinc transporter from escherichia coli 67 c2olsA_ not modelled 17.1 18 PDB header:transferase Chain: A: PDB Molecule:phosphoenolpyruvate synthase; PDBTitle: the crystal structure of the phosphoenolpyruvate synthase from2 neisseria meningitidis 68 d1hyha1 not modelled 15.7 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 69 d1dxea_ not modelled 14.8 13 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:HpcH/HpaI aldolase 70 d2bdua1 not modelled 14.6 36 Fold:HAD-like Superfamily:HAD-like Family:Pyrimidine 5'-nucleotidase (UMPH-1) 71 d1y81a1 not modelled 14.4 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 72 c3cyvA_ not modelled 14.4 10 PDB header:lyase Chain: A: PDB Molecule:uroporphyrinogen decarboxylase; PDBTitle: crystal structure of uroporphyrinogen decarboxylase from2 shigella flexineri: new insights into its catalytic3 mechanism 73 c2bs9B_ not modelled 14.0 13 PDB header:hydrolase Chain: B: PDB Molecule:beta-xylosidase; PDBTitle: native crystal structure of a gh39 beta-xylosidase xynb12 from geobacillus stearothermophilus 74 d1c7ga_ not modelled 14.0 12 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Beta-eliminating lyases 75 d2d59a1 not modelled 13.7 13 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:CoA-binding domain 76 c2csuB_ not modelled 13.5 10 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:457aa long hypothetical protein; PDBTitle: crystal structure of ph0766 from pyrococcus horikoshii ot3 77 d1edta_ not modelled 13.5 10 Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Type II chitinase 78 c2vqqA_ not modelled 13.4 25 PDB header:hydrolase Chain: A: PDB Molecule:histone deacetylase 4; PDBTitle: structure of hdac4 catalytic domain (a double cysteine-to-2 alanine mutant) bound to a trifluoromethylketone inhbitor 79 d2v1pa1 not modelled 12.7 19 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Beta-eliminating lyases 80 c3gycB_ not modelled 12.3 8 PDB header:hydrolase Chain: B: PDB Molecule:putative glycoside hydrolase; PDBTitle: crystal structure of putative glycoside hydrolase (yp_001304622.1)2 from parabacteroides distasonis atcc 8503 at 1.85 a resolution 81 d5ldha1 not modelled 12.1 10 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 82 c2i55C_ not modelled 12.0 28 PDB header:isomerase Chain: C: PDB Molecule:phosphomannomutase; PDBTitle: complex of glucose-1,6-bisphosphate with phosphomannomutase from2 leishmania mexicana 83 c2v5jB_ not modelled 11.5 13 PDB header:lyase Chain: B: PDB Molecule:2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase; PDBTitle: apo class ii aldolase hpch 84 d1e0ta2 not modelled 11.2 7 Fold:TIM beta/alpha-barrel Superfamily:Phosphoenolpyruvate/pyruvate domain Family:Pyruvate kinase 85 d1tpla_ not modelled 11.2 12 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:Beta-eliminating lyases 86 c3i5tB_ not modelled 11.2 9 PDB header:transferase Chain: B: PDB Molecule:aminotransferase; PDBTitle: crystal structure of aminotransferase prk07036 from rhodobacter2 sphaeroides kd131 87 c2r47C_ not modelled 10.4 9 PDB header:structural genomics, unknown function Chain: C: PDB Molecule:uncharacterized protein mth_862; PDBTitle: crystal structure of mth_862 protein of unknown function from2 methanothermobacter thermautotrophicus 88 d2tpsa_ not modelled 10.4 14 Fold:TIM beta/alpha-barrel Superfamily:Thiamin phosphate synthase Family:Thiamin phosphate synthase 89 d9ldta1 not modelled 10.2 12 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 90 d1llda1 not modelled 10.2 16 Fold:NAD(P)-binding Rossmann-fold domains Superfamily:NAD(P)-binding Rossmann-fold domains Family:LDH N-terminal domain-like 91 c3fcrA_ not modelled 10.2 9 PDB header:transferase Chain: A: PDB Molecule:putative aminotransferase; PDBTitle: crystal structure of putative aminotransferase (yp_614685.1) from2 silicibacter sp. tm1040 at 1.80 a resolution 92 d1ohwa_ not modelled 10.1 4 Fold:PLP-dependent transferase-like Superfamily:PLP-dependent transferases Family:GABA-aminotransferase-like 93 c2jfqA_ not modelled 9.8 15 PDB header:isomerase Chain: A: PDB Molecule:glutamate racemase; PDBTitle: crystal structure of staphylococcus aureus glutamate2 racemase in complex with d-glutamate 94 c1uhvD_ not modelled 9.8 10 PDB header:hydrolase Chain: D: PDB Molecule:beta-xylosidase; PDBTitle: crystal structure of beta-d-xylosidase from2 thermoanaerobacterium saccharolyticum, a family 393 glycoside hydrolase 95 d1iv0a_ not modelled 9.7 11 Fold:Ribonuclease H-like motif Superfamily:Ribonuclease H-like Family:Putative Holliday junction resolvase RuvX 96 c2e7vA_ not modelled 9.3 6 PDB header:hydrolase Chain: A: PDB Molecule:transmembrane protease; PDBTitle: crystal structure of sea domain of transmembrane protease2 from mus musculus 97 c3jszA_ not modelled 9.2 12 PDB header:transferase Chain: A: PDB Molecule:putative uncharacterized protein; PDBTitle: legionella pneumophila glucosyltransferase lgt1 n293a with udp-glc 98 c2wvsD_ not modelled 9.0 13 PDB header:hydrolase Chain: D: PDB Molecule:alpha-l-fucosidase; PDBTitle: crystal structure of an alpha-l-fucosidase gh29 trapped2 covalent intermediate from bacteroides thetaiotaomicron in3 complex with 2-fluoro-fucosyl fluoride using an e288q4 mutant 99 c2vwtA_ not modelled 8.7 16 PDB header:lyase Chain: A: PDB Molecule:yfau, 2-keto-3-deoxy sugar aldolase; PDBTitle: crystal structure of yfau, a metal ion dependent class ii2 aldolase from escherichia coli k12 - mg-pyruvate product3 complex

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0