396 c3tmiA_ Probab=96.18   E-value=0.072  Score=30.98  Aligned_columns=107  Identities=16%

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCC----EEEECHHHHHHHHHHHHHCCCHH---------------------
Q ss_conf             82689779986489999999999973067996----66318899999999997313168---------------------
Q batch____       166 NPLFLYGGTGLGKTHLLHAVGNGIMARKPNAK----VVYMHSERFVQDMVKALQNNAIE---------------------  220 (467)
Q Consensus       166 ~~lll~G~~G~GKT~La~aIa~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~---------------------  220 (467)
                      ..++++.|+|+|||..+-.++.+.....+...    ++-++...+.......++.-...                     
T Consensus        19 ~n~ii~~~TGsGKT~~a~~~i~~~l~~~~~~~~~k~Lii~Pt~~L~~Q~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~   98 (670)
T c3tmiA_          19 KNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATAENVPVEQI   98 (670)
T ss_dssp             CCEEEECCTTSCHHHHHHHHHHHHHHTSCTTCCCCEEEECSSHHHHHHHHHHHHHHHTTTTCCEEEECTTTCSSSCHHHH
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHH
T ss_conf             98999908998658999999999997242357976999828999999999999984476876999986797667888874


Q ss_pred             --------------------HHHHHHHCCCEEEECCCHHCCCCHHHHHHHHHHHHHHHHC---CCEEEEEECCCH
Q ss_conf             --------------------9998520799288635210247336899999999999965---980899961780
Q batch____       221 --------------------EFKRYYRSVDALLIDDIQFFANKERSQEEFFHTFNALLEG---NQQIILTSDRYP  272 (467)
Q Consensus       221 --------------------~f~~~~~~~~vL~iDei~~l~~~~~~q~~l~~~~~~~~~~---~~~ivi~~~~~p  272 (467)
                                          .....+...+++++||.|.+.+...........+......   ..+.++..+..|
T Consensus        99 ~~~~~iii~T~~~l~~~l~~~~~~~~~~~~~iIiDEaH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~t~t~  173 (670)
T c3tmiA_          99 VENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSGPLPQVIGLTASV  173 (670)
T ss_dssp             HHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGSSSSSHHHHHHHHHHHHTTSSCCSCCCEEEEEESCC
T ss_pred             HCCCCEEEECHHHHHHHHHCCCCCCCCCCCEEEEECCHHCCCCCCHHHHHHHHHHHHHHHCCCCCCEEEEECCCC
T ss_conf             138989999878998887527545701177888503022036773035789999999862157776299860667