27 c1s3sA_ Probab=99.87   E-value=1.1e-20  Score=152.97  Aligned_columns=234  Identities=17%

Q ss_pred             HCCCCCCCCCCCCCCCHHCCCCCHHHHHHHHHHHH--------HHCCCCCCCCEEEECCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             00111100133333310002584169999999999--------8521666682689779986489999999999973067
Q batch____       123 PAEPTYRSNVNVKHTFDNFVEGKSNQLARAAARQV--------ADNPGGAYNPLFLYGGTGLGKTHLLHAVGNGIMARKP  194 (467)
Q Consensus       123 ~~~~~~~~~ln~~~tFd~~~~g~~n~~a~~~~~~~--------~~~~~~~~~~lll~G~~G~GKT~La~aIa~~~~~~~~  194 (467)
                      ...........+..+|++....+............        .+.......++|||||||||||++++++|+++     
T Consensus       166 ~~~~~~~~~~~~~~~~~dIgGl~~~k~~l~~~i~~pl~~~~~~~~~g~~~~~~~Ll~Gp~G~GKt~l~~~ia~~~-----  240 (436)
T c1s3sA_         166 PIKREDEEESLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANET-----  240 (436)
T ss_dssp             CBCCCTTCCCTTSCCGGGCCSCHHHHHHHHHHHHHHHHCTTHHHHCCCCCCCEEEEECSTTSSHHHHHHHHHHHH-----
T ss_pred             CCCCCCCCCCCCCCCHHHHHCHHHHHHHHHHHHHHHHHCHHHHHHCCCCCCCEEEEECCCCCCHHHHHHHHHHHC-----
T ss_conf             444321012356789534205499999999999975018898974889987538986799899789999998744-----


Q ss_pred             CCCEEEECHHHHHHHHHHHHHCCCHHHHHH-HHHCCCEEEECCCHHCCCC---------HHHHHHHHHHHHHHHHCCCEE
Q ss_conf             996663188999999999973131689998-5207992886352102473---------368999999999999659808
Q batch____       195 NAKVVYMHSERFVQDMVKALQNNAIEEFKR-YYRSVDALLIDDIQFFANK---------ERSQEEFFHTFNALLEGNQQI  264 (467)
Q Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~-~~~~~~vL~iDei~~l~~~---------~~~q~~l~~~~~~~~~~~~~i  264 (467)
                      +.+++.+++.++.+.++|.........|.. +...+.+|+|||+|.+.++         ......++..++......+.+
T Consensus       241 ~~~~~~i~~~~l~~~~~g~~e~~l~~~f~~a~~~~p~ii~lDeid~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~  320 (436)
T c1s3sA_         241 GAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQRAHVI  320 (436)
T ss_dssp             TCEEEEEEHHHHHTSCTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCCSSSCCCTTHHHHHHHHHHHHHHCCGGGCEE
T ss_pred             CCCEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHCCCCEEEEHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEE
T ss_conf             99589973068700100158888999999997509948984000032102578874588999999986430222469879


Q ss_pred             EEEECCCHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHH
Q ss_conf             9996178012011004431000010130377989899999999999872889998999999996799-888999999999
Q batch____       265 ILTSDRYPKEINGVEDRLKSRFGWGLTVAIEPPELETRVAILMKKADENDIRLPGEVAFFIAKRLRS-NVRELEGALNRV  343 (467)
Q Consensus       265 vi~~~~~p~~~~~l~~~l~sR~~~~l~~~i~~P~~~~r~~il~~~~~~~~i~~~~e~l~~la~~~~~-~vR~L~~~l~~l  343 (467)
                      ++++++.|..   +++++++.-+....+.+..|+.++|.+||+.+.....+.-+-+ ++.||.+..| +.++|..++.+.
T Consensus       321 vi~tt~~~~~---l~~~l~r~~rf~~~i~~~~P~~~~R~~Il~~~~~~~~l~~d~~-~~~la~~t~g~~~~dl~~l~~~a  396 (436)
T c1s3sA_         321 VMAATNRPNS---IDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVD-LEQVANETHGHVGADLAALCSEA  396 (436)
T ss_dssp             EEEEESCGGG---SCGGGTSTTSSCEEEECCCCCHHHHHHHHHHTTTTSEECTTCC-HHHHHTTCCSCCHHHHHHHHHHH
T ss_pred             EEEECCCHHH---CCHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCC-HHHHHHHCCCCCHHHHHHHHHHH
T ss_conf             9984489588---8824204240303666789899999999999843898988668-78899876899889999999999


Q ss_pred             HHHHHH------------------CCCCCCHHHHHHHHHH
Q ss_conf             999862------------------5996898899999997
Q batch____       344 IANANF------------------TGRAITIDFVREALRD  365 (467)
Q Consensus       344 ~~~a~~------------------~~~~it~~~v~~~l~~  365 (467)
                      ...+..                  ....++.++.+++|++
T Consensus       397 ~~~a~~r~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~  436 (436)
T c1s3sA_         397 ALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQ  436 (436)
T ss_dssp             HHHHHHHHTTTTTCSSCCCBHHHHHHCEECHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCHHHHCCCHHHHHCCCCCHHHHHHHHHC
T ss_conf             9999998886402002103876673010169989988609