Phyre Home Retrieve Phyre Job Id
Emaill.a.kelley@imperial.ac.uk
DescriptionP37640
DateThu Jan 5 11:56:12 GMT 2012
Unique Job ID4cbb49dd52d4dfc5

Summary 

Top model
Image coloured by rainbow N → C terminus
Model (left) based on template c1zn2A_
Top template information
PDB header:transcription regulator
Chain: A: PDB Molecule:response regulatory protein;
PDBTitle: low resolution structure of response regulator styr
Confidence and coverage
Confidence:100.0% Coverage: 97%
194 residues ( 97% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis 

Secondary structure and disorder prediction 

   1........10.........20.........30.........40.........50.........60
Sequence  MQIVMFDRQSIFIHGMKISLQQRIPGVSIQGASQADELWQKLESYPEALVMLDGDQDGEF
Secondary structure 
SS confidence 
Disorder  ?
?
Disorder confidence 
 
   .........70.........80.........90.........100.........110.........120
Sequence  CYWLLQKTVVQFPEVKVLITATDCNKRWLQEVIHFNVLAIVPRDSTVETFALAVNSAAMG
Secondary structure 
SS confidence 
Disorder 
Disorder confidence 
 
   .........130.........140.........150.........160.........170.........180
Sequence  MMFLPGDWRTTPEKDIKDLKSLSARQREILTMLAAGESNKEIGRALNISTGTVKAHLESL
Secondary structure 
SS confidence 
Disorder 
?????????????
Disorder confidence 
 
   .........190.........200
Sequence  YRRLEVKNRTQAAMMLNISS
Secondary structure 
SS confidence 
Disorder 
??
Disorder confidence 
 

Confidence Key
High(9)                    Low (0)
?Disordered
Alpha helix
Beta strand

Domain analysis 

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

RankAligned region

PDB 1zn2 chain A

3D model

Region: 2 - 198
Aligned: 194
Modelled: 197
Confidence: 100.0%
Identity: 14%
PDB header:transcription regulator
Chain: A: PDB Molecule:response regulatory protein;
PDBTitle: low resolution structure of response regulator styr

Phyre2

PDB 3c3w chain B

3D model

Region: 1 - 198
Aligned: 198
Modelled: 198
Confidence: 100.0%
Identity: 19%
PDB header:transcription
Chain: B: PDB Molecule:two component transcriptional regulatory protein devr;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr

Phyre2

PDB 1rnl chain A

3D model

Region: 1 - 198
Aligned: 194
Modelled: 198
Confidence: 100.0%
Identity: 21%
PDB header:signal transduction protein
Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl;
PDBTitle: the nitrate/nitrite response regulator protein narl from narl

Phyre2

PDB 3kln chain C

3D model

Region: 1 - 198
Aligned: 198
Modelled: 198
Confidence: 100.0%
Identity: 20%
PDB header:transcription
Chain: C: PDB Molecule:transcriptional regulator, luxr family;
PDBTitle: vibrio cholerae vpst

Phyre2

PDB 1kgs chain A

3D model

Region: 1 - 189
Aligned: 187
Modelled: 189
Confidence: 99.9%
Identity: 11%
PDB header:dna binding protein
Chain: A: PDB Molecule:dna binding response regulator d;
PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima

Phyre2

PDB 3q9s chain A

3D model

Region: 2 - 193
Aligned: 189
Modelled: 192
Confidence: 99.9%
Identity: 15%
PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding response regulator;
PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans

Phyre2

PDB 3r0j chain A

3D model

Region: 1 - 189
Aligned: 186
Modelled: 189
Confidence: 99.9%
Identity: 13%
PDB header:dna binding protein
Chain: A: PDB Molecule:possible two component system response transcriptional
PDBTitle: structure of phop from mycobacterium tuberculosis

Phyre2

PDB 1ys7 chain B

3D model

Region: 2 - 188
Aligned: 185
Modelled: 187
Confidence: 99.9%
Identity: 13%
PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulatory protein prra;
PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+

Phyre2

PDB 2gwr chain A

3D model

Region: 1 - 189
Aligned: 186
Modelled: 189
Confidence: 99.9%
Identity: 13%
PDB header:signaling protein
Chain: A: PDB Molecule:dna-binding response regulator mtra;
PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis

Phyre2

PDB 2hqr chain A

3D model

Region: 1 - 188
Aligned: 182
Modelled: 188
Confidence: 99.9%
Identity: 10%
PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism

Phyre2

PDB 2oqr chain A

3D model

Region: 2 - 188
Aligned: 184
Modelled: 187
Confidence: 99.9%
Identity: 11%
PDB header:transcription,signaling protein
Chain: A: PDB Molecule:sensory transduction protein regx3;
PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis

Phyre2

PDB 1p2f chain A

3D model

Region: 2 - 189
Aligned: 183
Modelled: 188
Confidence: 99.8%
Identity: 15%
PDB header:transcription
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure analysis of response regulator drrb, a2 thermotoga maritima ompr/phob homolog

Phyre2

PDB 1s8n chain A

3D model

Region: 1 - 185
Aligned: 183
Modelled: 185
Confidence: 99.8%
Identity: 10%
Fold: Flavodoxin-like
Superfamily: CheY-like
Family: CheY-related

Phyre2

PDB 3cz5 chain B

3D model

Region: 2 - 126
Aligned: 125
Modelled: 125
Confidence: 99.7%
Identity: 14%
PDB header:transcription regulator
Chain: B: PDB Molecule:two-component response regulator, luxr family;
PDBTitle: crystal structure of two-component response regulator, luxr family,2 from aurantimonas sp. si85-9a1

Phyre2

PDB 3eul chain B

3D model

Region: 1 - 121
Aligned: 121
Modelled: 121
Confidence: 99.7%
Identity: 15%
PDB header:transcription
Chain: B: PDB Molecule:possible nitrate/nitrite response transcriptional
PDBTitle: structure of the signal receiver domain of the putative2 response regulator narl from mycobacterium tuberculosis

Phyre2

PDB 2ayx chain A

3D model

Region: 1 - 119
Aligned: 117
Modelled: 119
Confidence: 99.7%
Identity: 15%
PDB header:transferase
Chain: A: PDB Molecule:sensor kinase protein rcsc;
PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain

Phyre2

PDB 1a04 chain A domain 2

3D model

Region: 1 - 130
Aligned: 130
Modelled: 130
Confidence: 99.7%
Identity: 17%
Fold: Flavodoxin-like
Superfamily: CheY-like
Family: CheY-related

Phyre2

PDB 3eq2 chain A

3D model

Region: 2 - 118
Aligned: 112
Modelled: 117
Confidence: 99.7%
Identity: 12%
PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: structure of hexagonal crystal form of pseudomonas2 aeruginosa rssb

Phyre2

PDB 3b2n chain A

3D model

Region: 1 - 119
Aligned: 119
Modelled: 119
Confidence: 99.7%
Identity: 15%
PDB header:transcription
Chain: A: PDB Molecule:uncharacterized protein q99uf4;
PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus

Phyre2

PDB 1ny5 chain A

3D model

Region: 1 - 119
Aligned: 117
Modelled: 119
Confidence: 99.7%
Identity: 16%
PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state

Phyre2
1
c1zn2A_
2
c3c3wB_
3
c1rnlA_
4
c3klnC_
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c1kgsA_
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c3q9sA_
7
c3r0jA_
8
c1ys7B_
9
c2gwrA_
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c2hqrA_
11
c2oqrA_
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c1p2fA_
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d1s8na_
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c3cz5B_
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c3eulB_
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c2ayxA_
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d1a04a2
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c3eq2A_
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c3b2nA_
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c1ny5A_
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Detailed template information 

#
Template Alignment Coverage3D Model Confidence
% i.d. Template Information
1c1zn2A_
100.0 14 PDB header:transcription regulator
Chain: A: PDB Molecule:response regulatory protein;
PDBTitle: low resolution structure of response regulator styr
2c3c3wB_
100.0 19 PDB header:transcription
Chain: B: PDB Molecule:two component transcriptional regulatory protein devr;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic response2 regulator dosr
3c1rnlA_
100.0 21 PDB header:signal transduction protein
Chain: A: PDB Molecule:nitrate/nitrite response regulator protein narl;
PDBTitle: the nitrate/nitrite response regulator protein narl from narl
4c3klnC_
100.0 20 PDB header:transcription
Chain: C: PDB Molecule:transcriptional regulator, luxr family;
PDBTitle: vibrio cholerae vpst
5c1kgsA_
99.9 11 PDB header:dna binding protein
Chain: A: PDB Molecule:dna binding response regulator d;
PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima
6c3q9sA_
99.9 15 PDB header:dna binding protein
Chain: A: PDB Molecule:dna-binding response regulator;
PDBTitle: crystal structure of rra(1-215) from deinococcus radiodurans
7c3r0jA_
99.9 13 PDB header:dna binding protein
Chain: A: PDB Molecule:possible two component system response transcriptional
PDBTitle: structure of phop from mycobacterium tuberculosis
8c1ys7B_
99.9 13 PDB header:transcription regulator
Chain: B: PDB Molecule:transcriptional regulatory protein prra;
PDBTitle: crystal structure of the response regulator protein prra comlexed with2 mg2+
9c2gwrA_
99.9 13 PDB header:signaling protein
Chain: A: PDB Molecule:dna-binding response regulator mtra;
PDBTitle: crystal structure of the response regulator protein mtra from2 mycobacterium tuberculosis
10c2hqrA_
99.9 10 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism
11c2oqrA_
99.9 11 PDB header:transcription,signaling protein
Chain: A: PDB Molecule:sensory transduction protein regx3;
PDBTitle: the structure of the response regulator regx3 from mycobacterium2 tuberculosis
12c1p2fA_
99.8 15 PDB header:transcription
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure analysis of response regulator drrb, a2 thermotoga maritima ompr/phob homolog
13d1s8na_
99.8 10 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
14c3cz5B_
99.7 14 PDB header:transcription regulator
Chain: B: PDB Molecule:two-component response regulator, luxr family;
PDBTitle: crystal structure of two-component response regulator, luxr family,2 from aurantimonas sp. si85-9a1
15c3eulB_
99.7 15 PDB header:transcription
Chain: B: PDB Molecule:possible nitrate/nitrite response transcriptional
PDBTitle: structure of the signal receiver domain of the putative2 response regulator narl from mycobacterium tuberculosis
16c2ayxA_
99.7 15 PDB header:transferase
Chain: A: PDB Molecule:sensor kinase protein rcsc;
PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain
17d1a04a2
99.7 17 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
18c3eq2A_
99.7 12 PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: structure of hexagonal crystal form of pseudomonas2 aeruginosa rssb
19c3b2nA_
99.7 15 PDB header:transcription
Chain: A: PDB Molecule:uncharacterized protein q99uf4;
PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus
20c1ny5A_
99.7 16 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigm54 activator (aaa+ atpase) in the inactive2 state
21c3breA_
not modelled 99.7 9 PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: crystal structure of p.aeruginosa pa3702
22d1dz3a_
not modelled 99.7 11 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
23d1ny5a1
not modelled 99.7 16 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
24c1a2oB_
not modelled 99.7 11 PDB header:bacterial chemotaxis
Chain: B: PDB Molecule:cheb methylesterase;
PDBTitle: structural basis for methylesterase cheb regulation by a2 phosphorylation-activated domain
25d1kgsa2
not modelled 99.7 9 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
26c3cu5B_
not modelled 99.7 14 PDB header:transcription regulator
Chain: B: PDB Molecule:two component transcriptional regulator, arac family;
PDBTitle: crystal structure of a two component transcriptional regulator arac2 from clostridium phytofermentans isdg
27c3rqiA_
not modelled 99.7 13 PDB header:transcription
Chain: A: PDB Molecule:response regulator protein;
PDBTitle: crystal structure of a response regulator protein from burkholderia2 pseudomallei with a phosphorylated aspartic acid, calcium ion and3 citrate
28c1w25B_
not modelled 99.7 9 PDB header:signaling protein
Chain: B: PDB Molecule:stalked-cell differentiation controlling protein;
PDBTitle: response regulator pled in complex with c-digmp
29c3i5aA_
not modelled 99.7 6 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator/ggdef domain protein;
PDBTitle: crystal structure of full-length wpsr from pseudomonas syringae
30c2qv0A_
not modelled 99.7 6 PDB header:transcription
Chain: A: PDB Molecule:protein mrke;
PDBTitle: crystal structure of the response regulatory domain of2 protein mrke from klebsiella pneumoniae
31d1ys7a2
not modelled 99.7 9 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
32d1jbea_
not modelled 99.7 14 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
33d1a2oa1
not modelled 99.7 9 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
34d1peya_
not modelled 99.7 17 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
35d1u0sy_
not modelled 99.7 11 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
36d2ayxa1
not modelled 99.7 15 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
37c3hdgE_
not modelled 99.7 8 PDB header:structural genomics, unknown function
Chain: E: PDB Molecule:uncharacterized protein;
PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes
38d1dbwa_
not modelled 99.6 8 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
39c3dzdA_
not modelled 99.6 12 PDB header:transcription regulator
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: crystal structure of sigma54 activator ntrc4 in the inactive2 state
40d2a9pa1
not modelled 99.6 11 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
41c3t8yA_
not modelled 99.6 9 PDB header:hydrolase
Chain: A: PDB Molecule:chemotaxis response regulator protein-glutamate
PDBTitle: crystal structure of the response regulator domain of thermotoga2 maritima cheb
42c3sztB_
not modelled 99.6 33 PDB header:transcription
Chain: B: PDB Molecule:quorum-sensing control repressor;
PDBTitle: quorum sensing control repressor, qscr, bound to n-3-oxo-dodecanoyl-l-2 homoserine lactone
43c3f6cB_
not modelled 99.6 13 PDB header:dna binding protein
Chain: B: PDB Molecule:positive transcription regulator evga;
PDBTitle: crystal structure of n-terminal domain of positive transcription2 regulator evga from escherichia coli
44c2rjnA_
not modelled 99.6 10 PDB header:hydrolase
Chain: A: PDB Molecule:response regulator receiver:metal-dependent
PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis
45d1mvoa_
not modelled 99.6 13 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
46d1krwa_
not modelled 99.6 14 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
47c2zwmA_
not modelled 99.6 10 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein yycf;
PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis
48c3cnbC_
not modelled 99.6 11 PDB header:dna binding protein
Chain: C: PDB Molecule:dna-binding response regulator, merr family;
PDBTitle: crystal structure of signal receiver domain of dna binding response2 regulator protein (merr) from colwellia psychrerythraea 34h
49d1qkka_
not modelled 99.6 13 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
50d2pl1a1
not modelled 99.6 14 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
51c2qr3A_
not modelled 99.6 14 PDB header:transcription
Chain: A: PDB Molecule:two-component system response regulator;
PDBTitle: crystal structure of the n-terminal signal receiver domain of two-2 component system response regulator from bacteroides fragilis
52c1h0mD_
not modelled 99.6 17 PDB header:transcription/dna
Chain: D: PDB Molecule:transcriptional activator protein trar;
PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna
53c2jrlA_
not modelled 99.6 14 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulator (ntrc family);
PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer
54d1yioa2
not modelled 99.6 9 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
55c2q0oA_
not modelled 99.6 17 PDB header:transcription
Chain: A: PDB Molecule:probable transcriptional activator protein trar;
PDBTitle: crystal structure of an anti-activation complex in bacterial quorum2 sensing
56c2qvgA_
not modelled 99.6 10 PDB header:transferase
Chain: A: PDB Molecule:two component response regulator;
PDBTitle: the crystal structure of a two-component response regulator2 from legionella pneumophila
57c3nhzA_
not modelled 99.6 11 PDB header:dna binding protein
Chain: A: PDB Molecule:two component system transcriptional regulator mtra;
PDBTitle: structure of n-terminal domain of mtra
58c3hv2B_
not modelled 99.6 17 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator/hd domain protein;
PDBTitle: crystal structure of signal receiver domain of hd domain-2 containing protein from pseudomonas fluorescens pf-5
59c3khtA_
not modelled 99.6 8 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator from hahella chejuensis
60c3cfyA_
not modelled 99.6 10 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative luxo repressor protein;
PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus
61c3qp5C_
not modelled 99.6 36 PDB header:transcription
Chain: C: PDB Molecule:cvir transcriptional regulator;
PDBTitle: crystal structure of cvir bound to antagonist chlorolactone (cl)
62c3hebB_
not modelled 99.6 14 PDB header:transcription regulator
Chain: B: PDB Molecule:response regulator receiver domain protein (chey);
PDBTitle: crystal structure of response regulator receiver domain from2 rhodospirillum rubrum
63d1w25a1
not modelled 99.6 9 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
64c3gt7A_
not modelled 99.6 13 PDB header:hydrolase
Chain: A: PDB Molecule:sensor protein;
PDBTitle: crystal structure of signal receiver domain of signal2 transduction histidine kinase from syntrophus3 aciditrophicus
65c3jteA_
not modelled 99.6 16 PDB header:protein binding
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver domain2 protein from clostridium thermocellum
66d1zh2a1
not modelled 99.6 9 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
67d1k66a_
not modelled 99.6 14 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
68c2qzjC_
not modelled 99.6 15 PDB header:transcription
Chain: C: PDB Molecule:two-component response regulator;
PDBTitle: crystal structure of a two-component response regulator from2 clostridium difficile
69d1p6qa_
not modelled 99.6 16 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
70c3t6kB_
not modelled 99.6 10 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator receiver;
PDBTitle: crystal structure of a hypothetical response regulator (caur_3799)2 from chloroflexus aurantiacus j-10-fl at 1.86 a resolution
71c3crnA_
not modelled 99.6 16 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver domain protein, chey-like;
PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1
72c3a0rB_
not modelled 99.6 18 PDB header:transferase
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of histidine kinase thka (tm1359) in complex with2 response regulator protein trra (tm1360)
73d1zesa1
not modelled 99.6 10 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
74c3h1gA_
not modelled 99.6 16 PDB header:signaling protein
Chain: A: PDB Molecule:chemotaxis protein chey homolog;
PDBTitle: crystal structure of chey mutant t84a of helicobacter pylori
75d1zgza1
not modelled 99.6 11 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
76c2jk1A_
not modelled 99.6 17 PDB header:dna-binding
Chain: A: PDB Molecule:hydrogenase transcriptional regulatory protein hupr1;
PDBTitle: crystal structure of the wild-type hupr receiver domain
77d1i3ca_
not modelled 99.5 11 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
78d1xhfa1
not modelled 99.5 13 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
79c3m6mF_
not modelled 99.5 12 PDB header:lyase/transferase
Chain: F: PDB Molecule:sensory/regulatory protein rpfc;
PDBTitle: crystal structure of rpff complexed with rec domain of rpfc
80c3lteH_
not modelled 99.5 10 PDB header:transcription
Chain: H: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri
81c3ilhA_
not modelled 99.5 15 PDB header:transcription regulator
Chain: A: PDB Molecule:two component response regulator;
PDBTitle: crystal structure of two component response regulator from cytophaga2 hutchinsonii
82c2zayA_
not modelled 99.5 11 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator from desulfuromonas2 acetoxidans
83d1heya_
not modelled 99.5 13 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
84c3snkA_
not modelled 99.5 12 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator chey-like protein;
PDBTitle: crystal structure of a response regulator chey-like protein (mll6475)2 from mesorhizobium loti at 2.02 a resolution
85c3kcnA_
not modelled 99.5 13 PDB header:lyase
Chain: A: PDB Molecule:adenylate cyclase homolog;
PDBTitle: the crystal structure of adenylate cyclase from2 rhodopirellula baltica
86c3c3mA_
not modelled 99.5 14 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1
87c3i42A_
not modelled 99.5 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:response regulator receiver domain protein (chey-
PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus
88c3cg4A_
not modelled 99.5 11 PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like);
PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1
89c2qxyB_
not modelled 99.5 17 PDB header:transcription
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator from thermotoga2 maritima
90d1mb3a_
not modelled 99.5 7 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
91d2r25b1
not modelled 99.5 8 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
92c1zljE_
not modelled 99.5 30 PDB header:transcription
Chain: E: PDB Molecule:dormancy survival regulator;
PDBTitle: crystal structure of the mycobacterium tuberculosis hypoxic2 response regulator dosr c-terminal domain
93d1p2fa2
not modelled 99.5 13 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
94c3hzhA_
not modelled 99.5 8 PDB header:signaling protein
Chain: A: PDB Molecule:chemotaxis response regulator (chey-3);
PDBTitle: crystal structure of the chex-chey-bef3-mg+2 complex from2 borrelia burgdorferi
95c3c97A_
not modelled 99.5 7 PDB header:signaling protein, transferase
Chain: A: PDB Molecule:signal transduction histidine kinase;
PDBTitle: crystal structure of the response regulator receiver domain2 of a signal transduction histidine kinase from aspergillus3 oryzae
96c2rdmB_
not modelled 99.5 14 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of response regulator receiver protein from2 sinorhizobium medicae wsm419
97d1p4wa_
not modelled 99.5 28 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
98c3grcD_
not modelled 99.5 9 PDB header:transferase
Chain: D: PDB Molecule:sensor protein, kinase;
PDBTitle: crystal structure of a sensor protein from polaromonas sp.2 js666
99c3cloC_
not modelled 99.5 37 PDB header:transcription regulator
Chain: C: PDB Molecule:transcriptional regulator;
PDBTitle: crystal structure of putative transcriptional regulator containing a2 luxr dna binding domain (np_811094.1) from bacteroides3 thetaiotaomicron vpi-5482 at 2.04 a resolution
100c2qsjB_
not modelled 99.5 19 PDB header:transcription
Chain: B: PDB Molecule:dna-binding response regulator, luxr family;
PDBTitle: crystal structure of a luxr family dna-binding response2 regulator from silicibacter pomeroyi
101d2b4aa1
not modelled 99.5 14 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
102c3mmnA_
not modelled 99.5 10 PDB header:transferase
Chain: A: PDB Molecule:histidine kinase homolog;
PDBTitle: crystal structure of the receiver domain of the histidine kinase cki12 from arabidopsis thaliana complexed with mg2+
103c2hqoA_
not modelled 99.5 8 PDB header:signaling protein
Chain: A: PDB Molecule:putative transcriptional regulator;
PDBTitle: structure of a atypical orphan response regulator protein revealed a2 new phosphorylation-independent regulatory mechanism
104c3hdvB_
not modelled 99.5 16 PDB header:transcription regulator
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of response regulator receiver protein from2 pseudomonas putida
105c3cg0A_
not modelled 99.5 7 PDB header:lyase
Chain: A: PDB Molecule:response regulator receiver modulated diguanylate cyclase
PDBTitle: crystal structure of signal receiver domain of modulated diguanylate2 cyclase from desulfovibrio desulfuricans g20, an example of alternate3 folding
106c2krfB_
not modelled 99.4 30 PDB header:transcription
Chain: B: PDB Molecule:transcriptional regulatory protein coma;
PDBTitle: nmr solution structure of the dna binding domain of competence protein2 a
107c3gl9B_
not modelled 99.4 11 PDB header:signaling protein
Chain: B: PDB Molecule:response regulator;
PDBTitle: the structure of a histidine kinase-response regulator2 complex sheds light into two-component signaling and3 reveals a novel cis autophosphorylation mechanism
108d1fsea_
not modelled 99.4 34 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
109d1k68a_
not modelled 99.4 11 Fold:Flavodoxin-like
Superfamily:CheY-like
Family:CheY-related
110d1a04a1
not modelled 99.4 35 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
111d1l3la1
not modelled 99.4 18 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
112d1yioa1
not modelled 99.4 27 Fold:DNA/RNA-binding 3-helical bundle
Superfamily:C-terminal effector domain of the bipartite response regulators
Family:GerE-like (LuxR/UhpA family of transcriptional regulators)
113c3n0rA_
not modelled 99.4 12 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: structure of the phyr stress response regulator at 1.25 angstrom2 resolution
114c3luaA_
not modelled 99.4 11 PDB header:transcription regulator
Chain: A: PDB Molecule:response regulator receiver protein;
PDBTitle: crystal structure of a signal receiver domain of two component signal2 transduction (histidine kinase) from clostridium thermocellum
115c3kyiB_
not modelled 99.4 16 PDB header:transferase
Chain: B: PDB Molecule:chey6 protein;
PDBTitle: crystal structure of the phosphorylated p1 domain of chea3 in complex2 with chey6 from r. sphaeroides
116c1x3uA_
not modelled 99.4 26 PDB header:transcription
Chain: A: PDB Molecule:transcriptional regulatory protein fixj;
PDBTitle: solution structure of the c-terminal transcriptional2 activator domain of fixj from sinorhizobium melilot
117c3eodA_
not modelled 99.4 14 PDB header:signaling protein
Chain: A: PDB Molecule:protein hnr;
PDBTitle: crystal structure of n-terminal domain of e. coli rssb
118c3nhmA_
not modelled 99.4 9 PDB header:signaling protein
Chain: A: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator from myxococcus xanthus
119c3eqzB_
not modelled 99.4 11 PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:response regulator;
PDBTitle: crystal structure of a response regulator from colwellia2 psychrerythraea
120c2rnjA_
not modelled 99.4 38 PDB header:transcription
Chain: A: PDB Molecule:response regulator protein vrar;
PDBTitle: nmr structure of the s. aureus vrar dna binding domain

Binding site prediction 

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite


Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
 
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0