BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (61 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_B3I4G5 Tail fiber assembly protein n=7 Tax=Escherichia ... 124 1e-27 UniRef50_B1LH44 Putative uncharacterized protein n=1 Tax=Escheri... 60 2e-08 UniRef50_B4TAQ3 DNA polymerase V subunit n=11 Tax=root RepID=B4T... 52 4e-06 UniRef50_P03740 Tail fiber assembly protein n=117 Tax=root RepID... 45 5e-04 UniRef50_A8A1H5 Putative uncharacterized protein n=1 Tax=Escheri... 44 0.001 UniRef50_UPI000197C594 tail assembly chaperone gp38 n=1 Tax=Prov... 40 0.020 UniRef50_B6VLW5 Tail fiber assembly protein homolog from lambdoi... 40 0.022 >UniRef50_B3I4G5 Tail fiber assembly protein n=7 Tax=Escherichia RepID=B3I4G5_ECOLX Length = 101 Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 60/61 (98%), Positives = 60/61 (98%) Query: 1 MLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQEFSEYIAPLQDAVDLEIATEEERSLLE 60 MLPQHSDIEIAWYASIQQE NGWKTVTTQFYIQEFSEYIAPLQDAVDLEIATEEERSLLE Sbjct: 1 MLPQHSDIEIAWYASIQQELNGWKTVTTQFYIQEFSEYIAPLQDAVDLEIATEEERSLLE 60 Query: 61 A 61 A Sbjct: 61 A 61 >UniRef50_B1LH44 Putative uncharacterized protein n=1 Tax=Escherichia coli SMS-3-5 RepID=B1LH44_ECOSM Length = 199 Score = 60.5 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 26/37 (70%), Positives = 32/37 (86%) Query: 1 MLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQEFSE 37 M+P+ SDIEIAWY+SIQQEPNG KTVTTQ ++Q S+ Sbjct: 83 MMPRRSDIEIAWYSSIQQEPNGRKTVTTQRFVQGLSK 119 >UniRef50_B4TAQ3 DNA polymerase V subunit n=11 Tax=root RepID=B4TAQ3_SALHS Length = 223 Score = 52.4 bits (124), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 23/31 (74%), Positives = 28/31 (90%) Query: 7 DIEIAWYASIQQEPNGWKTVTTQFYIQEFSE 37 +IEIAWYASIQQEPNG KTVTTQ ++Q+ S+ Sbjct: 20 NIEIAWYASIQQEPNGRKTVTTQRFVQQLSK 50 >UniRef50_P03740 Tail fiber assembly protein n=117 Tax=root RepID=TFA_LAMBD Length = 194 Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 24/35 (68%), Positives = 28/35 (80%) Query: 27 TTQFYIQEFSEYIAPLQDAVDLEIATEEERSLLEA 61 T + +Q SE+IAPLQDA DLEIAT+EE SLLEA Sbjct: 132 TKKSLMQVASEHIAPLQDAADLEIATKEETSLLEA 166 >UniRef50_A8A1H5 Putative uncharacterized protein n=1 Tax=Escherichia coli HS RepID=A8A1H5_ECOHS Length = 67 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 19/37 (51%), Positives = 29/37 (78%) Query: 1 MLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQEFSE 37 ++P++SDIEIAW +I EPNG +TVTT +I+E ++ Sbjct: 15 VMPRNSDIEIAWRQAIVIEPNGRRTVTTSGFIRELAK 51 >UniRef50_UPI000197C594 tail assembly chaperone gp38 n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197C594 Length = 169 Score = 40.4 bits (93), Expect = 0.020, Method: Compositional matrix adjust. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 9/69 (13%) Query: 2 LPQHSDIEIAWY----ASIQQEPNGWKTV-----TTQFYIQEFSEYIAPLQDAVDLEIAT 52 LP +I+ W A +Q EP+ ++V Q ++E + IAPLQDAVDL IAT Sbjct: 75 LPTGFNIDGRWIYKNGAIMQYEPSLEESVFLASQQKQLLLEEATAAIAPLQDAVDLGIAT 134 Query: 53 EEERSLLEA 61 +EER L+A Sbjct: 135 DEERVQLKA 143 >UniRef50_B6VLW5 Tail fiber assembly protein homolog from lambdoid prophage dlp12 n=4 Tax=Enterobacteriaceae RepID=B6VLW5_PHOAA Length = 150 Score = 40.0 bits (92), Expect = 0.022, Method: Compositional matrix adjust. Identities = 19/27 (70%), Positives = 24/27 (88%) Query: 35 FSEYIAPLQDAVDLEIATEEERSLLEA 61 S+ IAPLQDAVDLE+A++EE+SLL A Sbjct: 95 VSKQIAPLQDAVDLEMASDEEKSLLAA 121 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B3I4G5 Tail fiber assembly protein n=7 Tax=Escherichia ... 108 7e-23 UniRef50_B1LH44 Putative uncharacterized protein n=1 Tax=Escheri... 76 5e-13 UniRef50_A8A1H5 Putative uncharacterized protein n=1 Tax=Escheri... 63 3e-09 UniRef50_B4TAQ3 DNA polymerase V subunit n=11 Tax=root RepID=B4T... 61 2e-08 UniRef50_P03740 Tail fiber assembly protein n=117 Tax=root RepID... 57 1e-07 Sequences not found previously or not previously below threshold: UniRef50_UPI000197C594 tail assembly chaperone gp38 n=1 Tax=Prov... 43 0.004 UniRef50_B6VLW5 Tail fiber assembly protein homolog from lambdoi... 42 0.004 UniRef50_Q9T1R1 Probable tail fiber assembly protein n=8 Tax=roo... 42 0.006 UniRef50_P40784 Tail fiber assembly protein homolog from lambdoi... 41 0.013 CONVERGED! >UniRef50_B3I4G5 Tail fiber assembly protein n=7 Tax=Escherichia RepID=B3I4G5_ECOLX Length = 101 Score = 108 bits (269), Expect = 7e-23, Method: Composition-based stats. Identities = 60/61 (98%), Positives = 60/61 (98%) Query: 1 MLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQEFSEYIAPLQDAVDLEIATEEERSLLE 60 MLPQHSDIEIAWYASIQQE NGWKTVTTQFYIQEFSEYIAPLQDAVDLEIATEEERSLLE Sbjct: 1 MLPQHSDIEIAWYASIQQELNGWKTVTTQFYIQEFSEYIAPLQDAVDLEIATEEERSLLE 60 Query: 61 A 61 A Sbjct: 61 A 61 >UniRef50_B1LH44 Putative uncharacterized protein n=1 Tax=Escherichia coli SMS-3-5 RepID=B1LH44_ECOSM Length = 199 Score = 75.5 bits (184), Expect = 5e-13, Method: Composition-based stats. Identities = 29/61 (47%), Positives = 42/61 (68%), Gaps = 8/61 (13%) Query: 1 MLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQEFSEYIAPLQDAVDLEIATEEERSLLE 60 M+P+ SDIEIAWY+SIQQEPNG KTVTTQ ++Q S+ V+ E + ++ + +E Sbjct: 83 MMPRRSDIEIAWYSSIQQEPNGRKTVTTQRFVQGLSK--------VNWEFSLKDANAWIE 134 Query: 61 A 61 + Sbjct: 135 S 135 >UniRef50_A8A1H5 Putative uncharacterized protein n=1 Tax=Escherichia coli HS RepID=A8A1H5_ECOHS Length = 67 Score = 62.8 bits (151), Expect = 3e-09, Method: Composition-based stats. Identities = 19/37 (51%), Positives = 29/37 (78%) Query: 1 MLPQHSDIEIAWYASIQQEPNGWKTVTTQFYIQEFSE 37 ++P++SDIEIAW +I EPNG +TVTT +I+E ++ Sbjct: 15 VMPRNSDIEIAWRQAIVIEPNGRRTVTTSGFIRELAK 51 >UniRef50_B4TAQ3 DNA polymerase V subunit n=11 Tax=root RepID=B4TAQ3_SALHS Length = 223 Score = 60.5 bits (145), Expect = 2e-08, Method: Composition-based stats. Identities = 24/34 (70%), Positives = 29/34 (85%) Query: 4 QHSDIEIAWYASIQQEPNGWKTVTTQFYIQEFSE 37 Q +IEIAWYASIQQEPNG KTVTTQ ++Q+ S+ Sbjct: 17 QTINIEIAWYASIQQEPNGRKTVTTQRFVQQLSK 50 >UniRef50_P03740 Tail fiber assembly protein n=117 Tax=root RepID=TFA_LAMBD Length = 194 Score = 57.4 bits (137), Expect = 1e-07, Method: Composition-based stats. Identities = 24/35 (68%), Positives = 28/35 (80%) Query: 27 TTQFYIQEFSEYIAPLQDAVDLEIATEEERSLLEA 61 T + +Q SE+IAPLQDA DLEIAT+EE SLLEA Sbjct: 132 TKKSLMQVASEHIAPLQDAADLEIATKEETSLLEA 166 >UniRef50_UPI000197C594 tail assembly chaperone gp38 n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI000197C594 Length = 169 Score = 42.8 bits (99), Expect = 0.004, Method: Composition-based stats. Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 9/69 (13%) Query: 2 LPQHSDIEIAWY----ASIQQEPNGWKTV-----TTQFYIQEFSEYIAPLQDAVDLEIAT 52 LP +I+ W A +Q EP+ ++V Q ++E + IAPLQDAVDL IAT Sbjct: 75 LPTGFNIDGRWIYKNGAIMQYEPSLEESVFLASQQKQLLLEEATAAIAPLQDAVDLGIAT 134 Query: 53 EEERSLLEA 61 +EER L+A Sbjct: 135 DEERVQLKA 143 >UniRef50_B6VLW5 Tail fiber assembly protein homolog from lambdoid prophage dlp12 n=4 Tax=Enterobacteriaceae RepID=B6VLW5_PHOAA Length = 150 Score = 42.4 bits (98), Expect = 0.004, Method: Composition-based stats. Identities = 20/34 (58%), Positives = 26/34 (76%) Query: 28 TQFYIQEFSEYIAPLQDAVDLEIATEEERSLLEA 61 Q + S+ IAPLQDAVDLE+A++EE+SLL A Sbjct: 88 KQQLMLTVSKQIAPLQDAVDLEMASDEEKSLLAA 121 >UniRef50_Q9T1R1 Probable tail fiber assembly protein n=8 Tax=root RepID=TFA_BPAPS Length = 155 Score = 42.0 bits (97), Expect = 0.006, Method: Composition-based stats. Identities = 17/34 (50%), Positives = 22/34 (64%) Query: 28 TQFYIQEFSEYIAPLQDAVDLEIATEEERSLLEA 61 +Q E I+PLQDA+DLE+AT+EE L A Sbjct: 96 KSGLMQGAREVISPLQDAIDLEMATQEETQKLTA 129 >UniRef50_P40784 Tail fiber assembly protein homolog from lambdoid prophage Fels-1 n=65 Tax=Enterobacteriaceae RepID=YCDD_SALTY Length = 191 Score = 40.9 bits (94), Expect = 0.013, Method: Composition-based stats. Identities = 18/34 (52%), Positives = 24/34 (70%) Query: 27 TTQFYIQEFSEYIAPLQDAVDLEIATEEERSLLE 60 T +Q S IAPLQDAVDL IAT++E++ L+ Sbjct: 134 TKSRLLQMASGKIAPLQDAVDLGIATDDEKAQLD 167 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.308 0.129 0.358 Lambda K H 0.267 0.0380 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 202,421,120 Number of Sequences: 3077464 Number of extensions: 5081508 Number of successful extensions: 9261 Number of sequences better than 1.0e-01: 9 Number of HSP's better than 0.1 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 9245 Number of HSP's gapped (non-prelim): 16 length of query: 61 length of database: 1,040,396,356 effective HSP length: 33 effective length of query: 28 effective length of database: 938,840,044 effective search space: 26287521232 effective search space used: 26287521232 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.6 bits) S2: 87 (38.2 bits)