54 d1pama4 Probab=100.00  E-value=0  Score=494.13  Aligned_columns=357  Identities=21%

Q ss_pred             CCCHHHCEEEEEECCCCCCCCCCCCCCCC--------------CCHHHHHHHHHHH--HHHHCCCCEEEECCCCCCCCCC
Q ss_conf             78834365799704623345788864335--------------4587632032125--7996799899982553578876
Q batch____       145 RTPWGSTIIYEAHVKGLTYLHPEIPVEIR--------------GTYKALGHPVMIN--YLKQLGITALELLPVAQFASEP  208 (657)
Q Consensus       145 ~~~~~~~viYE~hv~~ft~~~~~~~~~~~--------------Gtf~g~~~~~kLd--yLk~LGv~~I~L~Pi~~~~~~~  208 (657)
                      +..|++.|||||||++|...++.......              |||+|+  ++|||  |||+||||+||||||++++...
T Consensus         9 ~~w~~~~viY~i~~~~F~~~d~~~~~~~~~~~~~~~~~~~~~gGd~~gi--~~kLD~~YLk~LGv~~I~L~Pi~~~~~~~   86 (406)
T d1pama4           9 KQNFSTDVIYQIFTDRFSDGNPANNPTGAAFDGSCTNLRLYCGGDWQGI--INKINDGYLTGMGITAIWISQPVENIYSV   86 (406)
T ss_dssp             CSCCTTCCEEECCGGGTCCSCGGGCCCGGGBCTTCCSTTSBCCCCHHHH--HHHHHTTTTGGGTCCEEEECCCEEECCCC
T ss_pred             HHHHHCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHH--HHHCCHHHHHHCCCCEEEECCCCCCCCCC
T ss_conf             3353028289982111357786767666666667666556468868999--97449888996299899987763465544


Q ss_pred             CCCCCCCCC-CCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCCCCCCCCCCHHCCCCCCCCCC
Q ss_conf             544556667-7777567545615111688655188999999999998998999873033468765520000146777331
Q batch____       209 RLQRMGLSN-YWGYNPVAMFALHPAYACSPETALDEFRDAIKALHKAGIEVILDIVLNHSAELDLDGPLFSLRGIDNRSY  287 (657)
Q Consensus       209 ~~~~~~~~~-~wGY~~~~y~avd~~yGt~~~~~~~dfk~LV~~aH~~GI~VIlDvV~NH~~~~~~~~~~~~~~~~~~~~~  287 (657)
                      ......... ||||+++||++|||+|||     ++|||+||++||++||+||||+|+||++..+.+++...........+
T Consensus        87 ~~~~~~~~~~~~GY~~~d~~~id~~~Gt-----~~dfk~Lv~~~H~~Gi~VilD~V~NH~s~~~~~~~~~~~~~~~~~~~  161 (406)
T d1pama4          87 INYSGVNNTAYHGYWARDFKKTNPAYGT-----MQDFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNG  161 (406)
T ss_dssp             EEETTEEECCTTSCSEEEEEEECTTTCC-----HHHHHHHHHHHHHTTCEEEEEECTTEEEECCSSCTTSTTTTCEEETT
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCC-----HHHHHHHHHHHHHCCCEEEEEECCCCCCCCCCCCCHHCCCCCCCCCC
T ss_conf             4556667677777465745433734389-----99999999999878989999760452468763210000246555676


Q ss_pred             EEECCCCCCCC--------------------CCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEECCHHHCCCCCCC
Q ss_conf             46658998275--------------------8564551558899999999999999998639789998663206742122
Q batch____       288 YWIREDGDYHN--------------------WTGCGNTLNLSHPAVVDYASACLRYWVETCHVDGFRFDLAAVMGRTPEF  347 (657)
Q Consensus       288 ~~~~~~g~~~~--------------------~~g~~~dln~~np~Vr~~i~~~~~~Wl~e~gvDGfR~D~a~~i~~~~~~  347 (657)
                      +.........+                    .+..++|||++||+||+++++++++|+ ++||||||+|++++++..++.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~~p~v~~~~~~~~~~w~-e~giDGfR~D~~~~~~~~~~~  240 (406)
T d1pama4         162 NLLGGYTNDTQNLFHHYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMWL-DLGVDGIRVDAVKHMPFGWQK  240 (406)
T ss_dssp             EEEECSTTCTTCCBCCSCBCCCSSHHHHHHSBSTTEEEBCTTSHHHHHHHHHHHHHHH-HTTCCEEEETTGGGSCHHHHH
T ss_pred             CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH-HCCCCEEEECCHHHCCHHHHH
T ss_conf             6466677666673466677777776762006855354315898899999999999998-449978887575658989999


Q ss_pred             CCHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCCCC---CCCCEEECHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHH
Q ss_conf             21079999988365668769997014776300013678---774134437999999998626875488999877753876
Q batch____       348 RQDAPLFTAIQNCPVLSQVKLIAEPWDIAPGGYQVGNF---PPLFAEWNDHFRDAARRFWLHYDLPLGAFAGRFAASSDV  424 (657)
Q Consensus       348 ~~~~~l~~~i~~~~~~~~~~li~E~~~~~~~~~~~~~~---~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  424 (657)
                      .+...+...       +.+++++|.|............   ....+.+++.+++.+..++.+.......+...+......
T Consensus       241 ~~~~~~~~~-------~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (406)
T d1pama4         241 SFMATINNY-------KPVFTFGEWFLGVNEISPEYHQFANESGMSLLDFRFAQKARQVFRDNTDNMYGLKAMLEGSEVD  313 (406)
T ss_dssp             HHHHHHHHH-------SCCEEEECCCCCTTCCCHHHHHHHHHSSSEEBCHHHHHHHHHHHTTCSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHC-------CCEEEEEEECCCCHHHHHHHHHCCCCCCCEEECCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf             999998515-------9639998311675245346652366677122071799999999708887789999998523431


Q ss_pred             HHCCCCCHHHEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             40246673231332212577624665421100013322013565320123207865556643203578999999999999
Q batch____       425 FKRNGRLPSAAINLVTAHDGFTLRDCVCFNHKHNEANGEENRDGTNNNYSNNHGKEGLGGSLDLVERRRDSIHALLTTLL  504 (657)
Q Consensus       425 ~~~~~~~~~~~~nfi~~HD~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~a~~~~~  504 (657)
                      +..    +...+||++|||                                       ..+........++++++++++|
T Consensus       314 ~~~----~~~~~~f~~nHD---------------------------------------~~R~~~~~~~~~~~~~a~~~~~  350 (406)
T d1pama4         314 YAQ----VNDQVTFIDNHD---------------------------------------MERFHTSNGDRRKLEQALAFTL  350 (406)
T ss_dssp             STT----GGGCEECSCCTT---------------------------------------SCCSCCTTSCHHHHHHHHHHHH
T ss_pred             CCC----HHHCEEECCCCC---------------------------------------CCHHHHHCCCHHHHHHHHHHHH
T ss_conf             567----021043167876---------------------------------------2235430582899999999999


Q ss_pred             HHCCCEEEEECHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHH
Q ss_conf             8189718982123065678888878899864766878210379999999999987585421
Q batch____       505 LSQGTPMLLAGDEHGHSQHGNNNAYCQDNQLTWLDWSQASSGLTAFTAALIHLRKRIPALV  565 (657)
Q Consensus       505 t~pG~P~iy~G~E~g~~~~~~~~~~~~~~~~~~~~W~~~~~~l~~~~r~Li~lRk~~pal~  565 (657)
                      |+||+||||||+|+|+++..+      +..+..|+|++.++++++++|+||+|||++|||+
T Consensus       351 ~~pG~P~iy~G~E~g~~g~~d------~~~r~~~~~~~~~~~~~~~~~~L~~lR~~~paL~  405 (406)
T d1pama4         351 TSRGVPAIYYGSEQYMSGGND------PDNRARLPSFSTTTTAYQVIQKLAPLRKSNPAIA  405 (406)
T ss_dssp             HSSSEEEEETTGGGTCCCCST------TGGGCCCCCCCSCSHHHHHHHHHTTHHHHCHHHH
T ss_pred             HHCCCEEEECCHHCCCCCCCC------HHHCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCC
T ss_conf             828971987671015078856------3224547887564189999999999998762135