BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (111 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A5F019 GlpM protein n=41 Tax=Proteobacteria RepID=A5F01... 110 1e-23 UniRef50_Q7MAL5 GLPM PROTEIN n=1 Tax=Wolinella succinogenes RepI... 109 3e-23 UniRef50_C1DAK4 GlpM protein n=18 Tax=Proteobacteria RepID=C1DAK... 102 4e-21 UniRef50_P52112 Membrane protein glpM n=161 Tax=Bacteria RepID=G... 102 6e-21 UniRef50_B6XF70 Putative uncharacterized protein n=1 Tax=Provide... 101 8e-21 UniRef50_Q8D5H0 Uncharacterized membrane protein required for al... 99 3e-20 UniRef50_Q1QC57 Putative uncharacterized protein n=1 Tax=Psychro... 83 2e-15 UniRef50_Q983B4 Mlr8402 protein n=2 Tax=Rhizobiales RepID=Q983B4... 46 3e-04 UniRef50_C8X5R1 GlpM protein n=1 Tax=Desulfohalobium retbaense D... 38 0.095 >UniRef50_A5F019 GlpM protein n=41 Tax=Proteobacteria RepID=A5F019_VIBC3 Length = 116 Score = 110 bits (275), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 53/110 (48%), Positives = 79/110 (71%) Query: 2 GLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIF 61 L K LGAL VL+I +L+KTK+++I+GL+PLFPTFALIAHYIV +ER +E LR T +F Sbjct: 3 ALFFKCLLGALAVLIIALLSKTKSFFISGLVPLFPTFALIAHYIVGTERTMEDLRTTALF 62 Query: 62 SMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIICWIKLH 111 ++S+IPY YL++++YF+ + L V + W + A +L++ W +LH Sbjct: 63 GLYSLIPYAAYLLAVYYFSYRLSLTGTLVCATLVWLVFAALLLVGWTRLH 112 >UniRef50_Q7MAL5 GLPM PROTEIN n=1 Tax=Wolinella succinogenes RepID=Q7MAL5_WOLSU Length = 111 Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 55/99 (55%), Positives = 76/99 (76%) Query: 6 KAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIFSMWS 65 KA LGALVVL++ +LA++KNYYIAGLIPLFPTFAL+AH+IV SERG+E L+ T+IF W+ Sbjct: 8 KALLGALVVLIMALLARSKNYYIAGLIPLFPTFALMAHWIVGSERGVEELKKTVIFGAWA 67 Query: 66 IIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLI 104 +IPY +YL +++ RL A +G+ W ++A +LI Sbjct: 68 MIPYALYLFCVYWLIDYWRLEATLLGASLVWILAASILI 106 >UniRef50_C1DAK4 GlpM protein n=18 Tax=Proteobacteria RepID=C1DAK4_LARHH Length = 158 Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 52/110 (47%), Positives = 75/110 (68%) Query: 1 MGLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATII 60 M L+ KA LG L VLLI L+K+++YY+AGL+PLFPTFALIAH +V ERG AL+AT + Sbjct: 47 MMLLAKAGLGTLAVLLIAWLSKSRHYYLAGLVPLFPTFALIAHAVVGGERGAAALKATAL 106 Query: 61 FSMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIICWIKL 110 FS+ +++PY YL+++W G + L + + W + AW L+ W +L Sbjct: 107 FSLAALVPYAGYLLAVWLLAGRLSLLPVLLAATVVWLVLAWCLVAGWSRL 156 >UniRef50_P52112 Membrane protein glpM n=161 Tax=Bacteria RepID=GLPM_PSEAE Length = 109 Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 58/106 (54%), Positives = 77/106 (72%) Query: 6 KAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIFSMWS 65 KA +GA VV+L+ VL+KT+NYYIAGL+PLFPTFALIAHYIV R ++ L+ TI+F MWS Sbjct: 3 KALIGAAVVVLLAVLSKTRNYYIAGLVPLFPTFALIAHYIVGKGRSLDDLKTTIVFGMWS 62 Query: 66 IIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIICWIKLH 111 IIPYFVYL +L+ RL + + W ++A VL+ W++LH Sbjct: 63 IIPYFVYLAALYLLVERFRLETSLALAALAWLVAASVLVGLWVRLH 108 >UniRef50_B6XF70 Putative uncharacterized protein n=1 Tax=Providencia alcalifaciens DSM 30120 RepID=B6XF70_9ENTR Length = 126 Score = 101 bits (251), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 54/106 (50%), Positives = 73/106 (68%) Query: 2 GLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIF 61 L+IK GAL VL+I VL+++K YYIAGL+PLFPTFALIAH IV E+G+EALR T +F Sbjct: 17 ALLIKCLFGALAVLIIAVLSRSKVYYIAGLVPLFPTFALIAHVIVVQEQGVEALRKTALF 76 Query: 62 SMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIICW 107 +WS+IPY +YLV+++ F + + W I+A VL+ W Sbjct: 77 GLWSLIPYAMYLVTVYVFATKLTPWICLSLATLVWVITAAVLVYFW 122 >UniRef50_Q8D5H0 Uncharacterized membrane protein required for alginate biosynthesis n=5 Tax=Gammaproteobacteria RepID=Q8D5H0_VIBVU Length = 133 Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 52/109 (47%), Positives = 77/109 (70%) Query: 1 MGLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATII 60 + L +K+ LGA V++I +L+K+KN+YIAGL+PLFPTFALIAH+IV SER +E LR T + Sbjct: 20 ISLFLKSLLGAAAVVIIALLSKSKNFYIAGLVPLFPTFALIAHFIVGSERSMEDLRQTAL 79 Query: 61 FSMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIICWIK 109 F +WS++PY YL +++YF+ L + W ++A +LI+ W K Sbjct: 80 FGLWSLLPYAAYLAAVYYFSYRFSLVTTLSAATVIWLMAASLLIVAWTK 128 >UniRef50_Q1QC57 Putative uncharacterized protein n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1QC57_PSYCK Length = 124 Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 42/103 (40%), Positives = 66/103 (64%) Query: 5 IKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIFSMW 64 +K +GAL+VL I + A+T+ +Y+A L PLFPTF LI+H+IV +ER LR +IFSM Sbjct: 17 LKMLIGALMVLAIQLFAQTRFFYLAALAPLFPTFTLISHFIVGTERSPADLRVALIFSML 76 Query: 65 SIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIICW 107 +IP+ +Y +++ + L A + V W I+A +L++ W Sbjct: 77 GVIPHLIYTFVVFFSISYISLYKALLLGVVAWTIAAAILVLTW 119 >UniRef50_Q983B4 Mlr8402 protein n=2 Tax=Rhizobiales RepID=Q983B4_RHILO Length = 109 Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 1/100 (1%) Query: 1 MGLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATII 60 M +V K +G LV LI V A + + G++PL PTFA+IA V+++ R + Sbjct: 1 MDIVWKGVVGGLVTALI-VWASRRGNILPGILPLAPTFAVIALLAVSAKGDPGGFRDACL 59 Query: 61 FSMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISA 100 M +I Y +L + W F + A G +A W ++A Sbjct: 60 AGMKTIPAYLAFLGACWLFIDKVDYRLAVAGGIAVWLVAA 99 >UniRef50_C8X5R1 GlpM protein n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5R1_DESRD Length = 117 Score = 38.1 bits (87), Expect = 0.095, Method: Compositional matrix adjust. Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 2/77 (2%) Query: 10 GALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIFSMWSIIPY 69 G V+LI L + K I+GL LFP L++ Y + G E + +FS++++ Sbjct: 13 GGTAVVLISALGRLKYELISGLFVLFPAVTLVSFYFLGQSAGSETVGKVALFSIYAVPTP 72 Query: 70 FVYLVSLWYFTGMMRLP 86 +L++ ++ RLP Sbjct: 73 IAFLLAFYFL--QQRLP 87 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C1DAK4 GlpM protein n=18 Tax=Proteobacteria RepID=C1DAK... 104 1e-21 UniRef50_A5F019 GlpM protein n=41 Tax=Proteobacteria RepID=A5F01... 97 1e-19 UniRef50_Q8D5H0 Uncharacterized membrane protein required for al... 97 1e-19 UniRef50_B6XF70 Putative uncharacterized protein n=1 Tax=Provide... 94 1e-18 UniRef50_Q7MAL5 GLPM PROTEIN n=1 Tax=Wolinella succinogenes RepI... 93 2e-18 UniRef50_P52112 Membrane protein glpM n=161 Tax=Bacteria RepID=G... 91 1e-17 UniRef50_Q1QC57 Putative uncharacterized protein n=1 Tax=Psychro... 88 7e-17 UniRef50_Q983B4 Mlr8402 protein n=2 Tax=Rhizobiales RepID=Q983B4... 82 5e-15 Sequences not found previously or not previously below threshold: UniRef50_C8X5R1 GlpM protein n=1 Tax=Desulfohalobium retbaense D... 38 0.064 CONVERGED! >UniRef50_C1DAK4 GlpM protein n=18 Tax=Proteobacteria RepID=C1DAK4_LARHH Length = 158 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 52/110 (47%), Positives = 75/110 (68%) Query: 1 MGLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATII 60 M L+ KA LG L VLLI L+K+++YY+AGL+PLFPTFALIAH +V ERG AL+AT + Sbjct: 47 MMLLAKAGLGTLAVLLIAWLSKSRHYYLAGLVPLFPTFALIAHAVVGGERGAAALKATAL 106 Query: 61 FSMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIICWIKL 110 FS+ +++PY YL+++W G + L + + W + AW L+ W +L Sbjct: 107 FSLAALVPYAGYLLAVWLLAGRLSLLPVLLAATVVWLVLAWCLVAGWSRL 156 >UniRef50_A5F019 GlpM protein n=41 Tax=Proteobacteria RepID=A5F019_VIBC3 Length = 116 Score = 97.3 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 53/110 (48%), Positives = 79/110 (71%) Query: 2 GLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIF 61 L K LGAL VL+I +L+KTK+++I+GL+PLFPTFALIAHYIV +ER +E LR T +F Sbjct: 3 ALFFKCLLGALAVLIIALLSKTKSFFISGLVPLFPTFALIAHYIVGTERTMEDLRTTALF 62 Query: 62 SMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIICWIKLH 111 ++S+IPY YL++++YF+ + L V + W + A +L++ W +LH Sbjct: 63 GLYSLIPYAAYLLAVYYFSYRLSLTGTLVCATLVWLVFAALLLVGWTRLH 112 >UniRef50_Q8D5H0 Uncharacterized membrane protein required for alginate biosynthesis n=5 Tax=Gammaproteobacteria RepID=Q8D5H0_VIBVU Length = 133 Score = 97.3 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 52/110 (47%), Positives = 78/110 (70%) Query: 1 MGLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATII 60 + L +K+ LGA V++I +L+K+KN+YIAGL+PLFPTFALIAH+IV SER +E LR T + Sbjct: 20 ISLFLKSLLGAAAVVIIALLSKSKNFYIAGLVPLFPTFALIAHFIVGSERSMEDLRQTAL 79 Query: 61 FSMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIICWIKL 110 F +WS++PY YL +++YF+ L + W ++A +LI+ W K+ Sbjct: 80 FGLWSLLPYAAYLAAVYYFSYRFSLVTTLSAATVIWLMAASLLIVAWTKV 129 >UniRef50_B6XF70 Putative uncharacterized protein n=1 Tax=Providencia alcalifaciens DSM 30120 RepID=B6XF70_9ENTR Length = 126 Score = 93.8 bits (232), Expect = 1e-18, Method: Composition-based stats. Identities = 54/106 (50%), Positives = 73/106 (68%) Query: 2 GLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIF 61 L+IK GAL VL+I VL+++K YYIAGL+PLFPTFALIAH IV E+G+EALR T +F Sbjct: 17 ALLIKCLFGALAVLIIAVLSRSKVYYIAGLVPLFPTFALIAHVIVVQEQGVEALRKTALF 76 Query: 62 SMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIICW 107 +WS+IPY +YLV+++ F + + W I+A VL+ W Sbjct: 77 GLWSLIPYAMYLVTVYVFATKLTPWICLSLATLVWVITAAVLVYFW 122 >UniRef50_Q7MAL5 GLPM PROTEIN n=1 Tax=Wolinella succinogenes RepID=Q7MAL5_WOLSU Length = 111 Score = 93.5 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 56/106 (52%), Positives = 78/106 (73%) Query: 2 GLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIF 61 L KA LGALVVL++ +LA++KNYYIAGLIPLFPTFAL+AH+IV SERG+E L+ T+IF Sbjct: 4 SLGFKALLGALVVLIMALLARSKNYYIAGLIPLFPTFALMAHWIVGSERGVEELKKTVIF 63 Query: 62 SMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIICW 107 W++IPY +YL +++ RL A +G+ W ++A +LI + Sbjct: 64 GAWAMIPYALYLFCVYWLIDYWRLEATLLGASLVWILAASILIYSY 109 >UniRef50_P52112 Membrane protein glpM n=161 Tax=Bacteria RepID=GLPM_PSEAE Length = 109 Score = 90.8 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 58/108 (53%), Positives = 78/108 (72%) Query: 4 VIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIFSM 63 + KA +GA VV+L+ VL+KT+NYYIAGL+PLFPTFALIAHYIV R ++ L+ TI+F M Sbjct: 1 MFKALIGAAVVVLLAVLSKTRNYYIAGLVPLFPTFALIAHYIVGKGRSLDDLKTTIVFGM 60 Query: 64 WSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIICWIKLH 111 WSIIPYFVYL +L+ RL + + W ++A VL+ W++LH Sbjct: 61 WSIIPYFVYLAALYLLVERFRLETSLALAALAWLVAASVLVGLWVRLH 108 >UniRef50_Q1QC57 Putative uncharacterized protein n=1 Tax=Psychrobacter cryohalolentis K5 RepID=Q1QC57_PSYCK Length = 124 Score = 88.5 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 42/105 (40%), Positives = 67/105 (63%) Query: 3 LVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIFS 62 + +K +GAL+VL I + A+T+ +Y+A L PLFPTF LI+H+IV +ER LR +IFS Sbjct: 15 IWLKMLIGALMVLAIQLFAQTRFFYLAALAPLFPTFTLISHFIVGTERSPADLRVALIFS 74 Query: 63 MWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISAWVLIICW 107 M +IP+ +Y +++ + L A + V W I+A +L++ W Sbjct: 75 MLGVIPHLIYTFVVFFSISYISLYKALLLGVVAWTIAAAILVLTW 119 >UniRef50_Q983B4 Mlr8402 protein n=2 Tax=Rhizobiales RepID=Q983B4_RHILO Length = 109 Score = 82.3 bits (202), Expect = 5e-15, Method: Composition-based stats. Identities = 32/100 (32%), Positives = 50/100 (50%), Gaps = 1/100 (1%) Query: 1 MGLVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATII 60 M +V K +G LV LI V A + + G++PL PTFA+IA V+++ R + Sbjct: 1 MDIVWKGVVGGLVTALI-VWASRRGNILPGILPLAPTFAVIALLAVSAKGDPGGFRDACL 59 Query: 61 FSMWSIIPYFVYLVSLWYFTGMMRLPAAFVGSVACWGISA 100 M +I Y +L + W F + A G +A W ++A Sbjct: 60 AGMKTIPAYLAFLGACWLFIDKVDYRLAVAGGIAVWLVAA 99 >UniRef50_C8X5R1 GlpM protein n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5R1_DESRD Length = 117 Score = 38.4 bits (88), Expect = 0.064, Method: Composition-based stats. Identities = 20/90 (22%), Positives = 43/90 (47%) Query: 3 LVIKAALGALVVLLIGVLAKTKNYYIAGLIPLFPTFALIAHYIVASERGIEALRATIIFS 62 ++++ G V+LI L + K I+GL LFP L++ Y + G E + +FS Sbjct: 6 ILLRFIAGGTAVVLISALGRLKYELISGLFVLFPAVTLVSFYFLGQSAGSETVGKVALFS 65 Query: 63 MWSIIPYFVYLVSLWYFTGMMRLPAAFVGS 92 ++++ +L++ ++ + + A Sbjct: 66 IYAVPTPIAFLLAFYFLQQRLPVTWALFWG 95 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.329 0.147 0.432 Lambda K H 0.267 0.0444 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 457,788,137 Number of Sequences: 3077464 Number of extensions: 16903994 Number of successful extensions: 108683 Number of sequences better than 1.0e-01: 35 Number of HSP's better than 0.1 without gapping: 28 Number of HSP's successfully gapped in prelim test: 17 Number of HSP's that attempted gapping in prelim test: 108636 Number of HSP's gapped (non-prelim): 52 length of query: 111 length of database: 1,040,396,356 effective HSP length: 79 effective length of query: 32 effective length of database: 797,276,700 effective search space: 25512854400 effective search space used: 25512854400 T: 11 A: 40 X1: 16 ( 7.6 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (21.3 bits) S2: 87 (38.0 bits)