18/01/2012 10:56:57 : INFO  : Run start: Wed Jan 18 10:56:55 GMT 2012
18/01/2012 10:57:06 : INFO  : Initialised job
18/01/2012 10:57:09 : INFO  : Renaming log file 'phyre2_20120118_105654.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/4c5f9e928f22544e/phyre_20120118_105654.log'
18/01/2012 10:57:11 : INFO  : Initialised job:
Sequence
>batch____
MEHFDVAIIGLGPAGSALARKLAGKMQVIALDKKHQCGTEGFSKPCGGLLAPDAQRSFIR
DGLTLPVDVIANPQIFSVKTVDVAASLTRNYQRSYININRHAFDLWMKSLIPASVEVYHD
SLCRKIWREDDKWHVIFRADGWEQHITARYLVGADGANSMVRRHLYPDHQIRKYVAIQQW
FAEKHPVPFYSCIFDNSITNCYSWSISKDGYFIFGGAYPMKDGQTRFTTLKEKMSAFQFQ
FGKTVKSEKCTVLFPSRWQDFVCGKDNAFLIGEAAGFISASSLEGISYALDSTDILRSVL
LKQPEKLNTAYWRATRKLRLKLFGKIVKSRCLTAPALRKWIMRSGVAHIPQLKD

18/01/2012 10:57:13 : INFO  : Checked sequence
18/01/2012 10:57:18 : INFO  : Finding homologues with PSI-BLAST
18/01/2012 10:57:20 : INFO  : PSI-BLAST 3 iterations
18/01/2012 10:59:18 : INFO  : PSI-BLAST 5 iterations
18/01/2012 11:03:10 : INFO  : Finished PSI-BLAST
18/01/2012 11:03:13 : INFO  : Running Buildali to generate a3m file
18/01/2012 11:34:21 : INFO  : Converting to HMM
18/01/2012 11:34:31 : INFO  : Calibrating HMM
18/01/2012 11:34:52 : INFO  : Searching HMM database
18/01/2012 11:41:26 : INFO  : Finished buildali
18/01/2012 11:41:30 : INFO  : Predicting secondary structure
18/01/2012 11:41:46 : INFO  : Predicted secondary structure (PSI-Pred)
18/01/2012 11:41:51 : INFO  : Predicting Disordered regions
18/01/2012 11:41:59 : INFO  : Predicted Disorder (Disopred)
18/01/2012 11:42:02 : INFO  : Running memsat_svm check
18/01/2012 11:45:56 : INFO  : Running memsat_svm full
18/01/2012 11:50:11 : INFO  : Predicted Transmembrane (memsat_svm) ID '4c5f9e928f22544e'
18/01/2012 11:50:16 : INFO  : Initialising fold library search
18/01/2012 11:50:23 : INFO  : Initialised search input
18/01/2012 11:50:27 : INFO  : Building Ensemble models
18/01/2012 11:50:34 : INFO  : Building hh.c2qa2A_.model.1.pdb
18/01/2012 11:51:04 : INFO  : Building hh.c3i3lA_.model.2.pdb
18/01/2012 11:51:30 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4c5f9e928f22544e/hh.c3i3lA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4c5f9e928f22544e/c3i3lA_.2.pdb
18/01/2012 11:51:38 : INFO  : Building hh.c3fmwC_.model.3.pdb
18/01/2012 11:52:03 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4c5f9e928f22544e/hh.c3fmwC_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4c5f9e928f22544e/c3fmwC_.3.pdb
18/01/2012 11:52:11 : INFO  : Building hh.c2dkhA_.model.4.pdb
18/01/2012 11:52:36 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4c5f9e928f22544e/hh.c2dkhA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4c5f9e928f22544e/c2dkhA_.4.pdb
18/01/2012 11:52:44 : INFO  : Building hh.c3e1tA_.model.5.pdb
18/01/2012 11:53:09 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4c5f9e928f22544e/hh.c3e1tA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4c5f9e928f22544e/c3e1tA_.5.pdb
18/01/2012 11:53:17 : INFO  : Building hh.c1phhA_.model.6.pdb
18/01/2012 11:53:42 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4c5f9e928f22544e/hh.c1phhA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4c5f9e928f22544e/c1phhA_.6.pdb
18/01/2012 11:53:49 : INFO  : Building c2qa2A_.1.pdb
18/01/2012 11:54:18 : INFO  : Building c3i3lA_.2.pdb
18/01/2012 11:54:48 : INFO  : Building c3fmwC_.3.pdb
18/01/2012 11:55:16 : INFO  : Building c2dkhA_.4.pdb
18/01/2012 11:55:44 : INFO  : Building c3e1tA_.5.pdb
18/01/2012 11:56:13 : INFO  : Building c1phhA_.6.pdb
18/01/2012 11:56:41 : INFO  : Building c3nixF_.7.pdb
18/01/2012 11:57:09 : INFO  : Building c3atrA_.8.pdb
18/01/2012 11:57:37 : INFO  : Building c1pn0A_.9.pdb
18/01/2012 11:58:07 : INFO  : Building c3ihgA_.10.pdb
18/01/2012 11:58:37 : INFO  : Building c3allA_.11.pdb
18/01/2012 11:59:04 : INFO  : Building c2r0gB_.12.pdb
18/01/2012 11:59:33 : INFO  : Building c3gmbB_.13.pdb
18/01/2012 12:00:00 : INFO  : Building c3cgvA_.14.pdb
18/01/2012 12:00:28 : INFO  : Building c2rgjA_.15.pdb
18/01/2012 12:00:55 : INFO  : Building c2x3nA_.16.pdb
18/01/2012 12:01:21 : INFO  : Building c3c4aA_.17.pdb
18/01/2012 12:01:49 : INFO  : Building c2xdoC_.18.pdb
18/01/2012 12:02:17 : INFO  : Building c2pyxA_.19.pdb
18/01/2012 12:02:43 : INFO  : Building c2ardA_.20.pdb
18/01/2012 12:06:07 : INFO  : Finished HH model building
18/01/2012 12:06:10 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
18/01/2012 12:07:41 : INFO  : html domain output complete ID '4c5f9e928f22544e'
18/01/2012 14:10:06 : INFO  : Run end  : Wed Jan 18 14:10:04 GMT 2012
