BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (246 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q47036 Probable site-specific recombinase in afa region... 494 e-138 UniRef50_Q46776 Resolvase n=16 Tax=root RepID=Q46776_ECOLX 339 6e-92 UniRef50_Q6TFY0 ResD n=8 Tax=Enterobacteriaceae RepID=Q6TFY0_ERWAM 211 2e-53 UniRef50_A7M7E5 Int2 n=1 Tax=Serratia entomophila RepID=A7M7E5_9... 204 2e-51 UniRef50_P18021 Resolvase n=83 Tax=root RepID=REDM_ECOLX 192 6e-48 UniRef50_B3IBH1 Resolvase n=1 Tax=Escherichia coli E22 RepID=B3I... 192 7e-48 UniRef50_C4UMA5 Site-specific recombinase in afa region n=1 Tax=... 184 2e-45 UniRef50_D1S150 DNA integration/recombination/invertion protein ... 182 7e-45 UniRef50_A4SUL6 Resolvase n=1 Tax=Aeromonas salmonicida subsp. s... 169 8e-41 UniRef50_B2TSE9 Resolvase n=9 Tax=Enterobacteriaceae RepID=B2TSE... 166 8e-40 UniRef50_C8QGI0 Integrase family protein n=2 Tax=Pantoea sp. At-... 146 6e-34 UniRef50_B2VB47 Putative integrases, DNA breaking-rejoining enzy... 131 2e-29 UniRef50_A1U029 Phage integrase family protein n=2 Tax=Marinobac... 93 9e-18 UniRef50_A4BJY9 Resolvase n=1 Tax=Reinekea blandensis MED297 Rep... 82 1e-14 UniRef50_A3XLJ3 Tyrosine type site-specific recombinase n=1 Tax=... 77 4e-13 UniRef50_B3HBE4 ResA resolvase n=3 Tax=root RepID=B3HBE4_ECOLX 73 1e-11 UniRef50_A0LZY5 Phage integrase family protein n=3 Tax=Bacteria ... 71 4e-11 UniRef50_Q0W0L4 Integrase n=2 Tax=Euryarchaeota RepID=Q0W0L4_UNCMA 68 2e-10 UniRef50_C0Q8I9 Probable site-specific recombinase n=2 Tax=Salmo... 68 3e-10 UniRef50_C6JHS7 Transposase n=7 Tax=Bacteria RepID=C6JHS7_9FIRM 67 4e-10 UniRef50_P55632 Putative integrase/recombinase y4qK n=15 Tax=Pro... 65 2e-09 UniRef50_C0QM80 Tyrosine recombinase XerD n=1 Tax=Desulfobacteri... 64 5e-09 UniRef50_A6H1H3 Integrase/recombinase n=2 Tax=Bacteria RepID=A6H... 63 9e-09 UniRef50_D1N8W9 Tyrosine recombinase XerD n=1 Tax=Victivallis va... 62 1e-08 UniRef50_A4C321 Tyrosine type site-specific recombinase n=4 Tax=... 62 2e-08 UniRef50_B0TP43 Integron integrase n=9 Tax=Bacteria RepID=B0TP43... 61 3e-08 UniRef50_B9YCM7 Putative uncharacterized protein n=1 Tax=Holdema... 61 3e-08 UniRef50_Q72SA5 Tyrosine recombinase xerD n=6 Tax=Leptospira Rep... 61 3e-08 UniRef50_Q9F567 IntI2 protein n=38 Tax=Bacteria RepID=Q9F567_ECOLX 60 5e-08 UniRef50_C1SMP5 Site-specific recombinase XerD n=1 Tax=Denitrovi... 60 5e-08 UniRef50_A4CN61 Tyrosine type site-specific recombinase n=1 Tax=... 60 9e-08 UniRef50_Q3AB72 Tyrosine recombinase XerC n=1 Tax=Carboxydotherm... 60 9e-08 UniRef50_A2U2P8 Phage integrase family protein n=1 Tax=Polaribac... 60 9e-08 UniRef50_Q5HFS5 Tyrosine recombinase xerD n=101 Tax=Firmicutes R... 59 1e-07 UniRef50_UPI0001698363 tyrosine recombinase XerD n=1 Tax=Endorif... 59 1e-07 UniRef50_B7IFN3 Tyrosine recombinase xerC n=3 Tax=Thermotogaceae... 59 1e-07 UniRef50_A8F7B4 Tyrosine recombinase xerC n=1 Tax=Thermotoga let... 59 2e-07 UniRef50_A6DQI4 Tyrosine recombinase n=1 Tax=Lentisphaera araneo... 58 3e-07 UniRef50_D0LHX4 Integrase family protein n=1 Tax=Haliangium ochr... 58 3e-07 UniRef50_C4FX95 Putative uncharacterized protein n=1 Tax=Catonel... 58 3e-07 UniRef50_C5AC95 Tyrosine recombinase XerD n=82 Tax=cellular orga... 58 3e-07 UniRef50_UPI0001C31AAB integrase family protein n=1 Tax=Conexiba... 58 3e-07 UniRef50_A6DT72 Phage integrase n=1 Tax=Lentisphaera araneosa HT... 58 4e-07 UniRef50_B5YF74 Tyrosine recombinase XerD n=2 Tax=Dictyoglomus R... 57 4e-07 UniRef50_Q6LRH1 Hypothetical integrase-recombinase n=1 Tax=Photo... 57 5e-07 UniRef50_Q5WFP9 Site-specific tyrosine recombinase n=1 Tax=Bacil... 57 6e-07 UniRef50_C8NEN7 Integrase/recombinase XerC n=2 Tax=Granulicatell... 57 6e-07 UniRef50_B1VH11 Integrase/recombinase n=1 Tax=Corynebacterium ur... 57 6e-07 UniRef50_B3QWZ3 Integrase family protein n=11 Tax=Bacteroidetes/... 57 7e-07 UniRef50_C3Q7K5 Tyrosine type site-specific recombinase n=7 Tax=... 57 7e-07 UniRef50_Q5LEL4 Putative tyrosine recombinase n=2 Tax=Bacteroide... 57 7e-07 UniRef50_B0VFY6 Tyrosine recombinase xerD n=1 Tax=Candidatus Clo... 57 7e-07 UniRef50_C8R2R7 Tyrosine recombinase XerD n=1 Tax=Desulfurivibri... 57 8e-07 UniRef50_D2MQ50 Phage integrase, N-terminal SAM domain protein n... 57 8e-07 UniRef50_A6TQC7 Phage integrase family protein n=3 Tax=Clostridi... 56 9e-07 UniRef50_C0QJ38 Site-specific recombinase XerD (DNA replication,... 56 1e-06 UniRef50_D2LLC2 Integrase family protein n=2 Tax=Aciduliprofundu... 56 1e-06 UniRef50_A8YV25 Integrase/recombinase n=13 Tax=Lactobacillus Rep... 56 1e-06 UniRef50_Q1MS58 Site-specific recombinase XerC n=1 Tax=Lawsonia ... 56 1e-06 UniRef50_B1GYP8 Tyrosine recombinase XerD n=1 Tax=uncultured Ter... 56 1e-06 UniRef50_C7NP08 Integrase family protein n=3 Tax=Halobacteriacea... 55 1e-06 UniRef50_B6YWN8 Probable tyrosine recombinase xerC-like n=9 Tax=... 55 2e-06 UniRef50_C4LIF6 Integrase/recombinase n=1 Tax=Corynebacterium kr... 55 2e-06 UniRef50_Q01TI9 Phage integrase family protein n=6 Tax=Candidatu... 55 2e-06 UniRef50_B1HME0 Putative uncharacterized protein n=2 Tax=Bacilla... 55 3e-06 UniRef50_Q12Q52 Phage integrase n=12 Tax=Gammaproteobacteria Rep... 55 3e-06 UniRef50_Q3JF68 Phage integrase n=4 Tax=Chromatiaceae RepID=Q3JF... 55 3e-06 UniRef50_C0VHG1 Site-specific tyrosine recombinase n=1 Tax=Acine... 55 3e-06 UniRef50_Q2NUY3 Putative uncharacterized protein n=1 Tax=Sodalis... 54 3e-06 UniRef50_UPI0001C41B06 tyrosine recombinase XerC n=1 Tax=Methano... 54 4e-06 UniRef50_B6WSE8 Putative uncharacterized protein n=1 Tax=Desulfo... 54 4e-06 UniRef50_Q7ZAJ8 Tyrosine recombinase xerD n=13 Tax=Gammaproteoba... 54 4e-06 UniRef50_B2KBN7 Integrase family protein n=1 Tax=Elusimicrobium ... 54 4e-06 UniRef50_B2UNK4 Integrase family protein n=2 Tax=Verrucomicrobia... 54 4e-06 UniRef50_B8HGE6 Tyrosine recombinase XerD n=37 Tax=Actinobacteri... 54 5e-06 UniRef50_Q71Y59 Tyrosine recombinase xerD n=19 Tax=Firmicutes Re... 54 5e-06 UniRef50_UPI0000D54C0A tyrosine recombinase n=1 Tax=Psychroflexu... 54 6e-06 UniRef50_C7LWB1 Integrase family protein n=2 Tax=Desulfovibriona... 53 7e-06 UniRef50_C3RQN8 Site-specific tyrosine recombinase xerD n=3 Tax=... 53 7e-06 UniRef50_C7WJB9 Integrase n=3 Tax=Enterococcus faecalis RepID=C7... 53 9e-06 UniRef50_D0U650 Site-specific recombinase XerD n=1 Tax=unculture... 53 1e-05 UniRef50_C4L6H6 Integrase family protein n=1 Tax=Exiguobacterium... 53 1e-05 UniRef50_C2KPQ6 Tyrosine recombinase n=2 Tax=Mobiluncus mulieris... 53 1e-05 UniRef50_A8RBU2 Putative uncharacterized protein n=2 Tax=unclass... 53 1e-05 UniRef50_B7CAN0 Putative uncharacterized protein n=1 Tax=Eubacte... 53 1e-05 UniRef50_UPI0001C4241D integrase/recombinase n=1 Tax=Bacillus ps... 52 1e-05 UniRef50_B8I4A1 Integrase family protein n=1 Tax=Clostridium cel... 52 2e-05 UniRef50_C9RQE0 Integrase family protein n=1 Tax=Fibrobacter suc... 52 2e-05 UniRef50_Q3A4T3 Site-specific recombinase XerD n=24 Tax=root Rep... 52 2e-05 UniRef50_C0QHZ4 Phage-specific recombinase/integrase XerD n=1 Ta... 52 2e-05 UniRef50_C0GE84 Integrase family protein n=2 Tax=Firmicutes RepI... 52 2e-05 UniRef50_D1KE10 Site-specific recombinase XerC n=1 Tax=unculture... 52 2e-05 UniRef50_Q0AFS1 Tyrosine recombinase XerC subunit n=6 Tax=Betapr... 52 3e-05 UniRef50_C0QVM8 Site-specific recombinase XerD n=3 Tax=Brachyspi... 52 3e-05 UniRef50_C8WWD9 Integrase family protein n=2 Tax=Alicyclobacillu... 51 3e-05 UniRef50_A1VDD4 Tyrosine recombinase XerD subunit n=12 Tax=Desul... 51 3e-05 UniRef50_C5TJ38 Tyrosine recombinase XerD n=5 Tax=Neisseriaceae ... 51 3e-05 UniRef50_A5EXM2 Tyrosine recombinase XerD n=1 Tax=Dichelobacter ... 51 3e-05 UniRef50_A3EW74 Putative phage integrase family protein n=2 Tax=... 51 3e-05 UniRef50_C5CH36 Integrase family protein n=1 Tax=Kosmotoga olear... 51 3e-05 UniRef50_C4FQH3 Putative uncharacterized protein n=1 Tax=Veillon... 51 3e-05 UniRef50_B5YGX8 Tyrosine recombinase XerD n=1 Tax=Thermodesulfov... 51 3e-05 UniRef50_B8IZE7 Integrase family protein n=5 Tax=Desulfovibriona... 51 4e-05 UniRef50_B0SBH2 Tyrosine site-specific recombinase XerC n=2 Tax=... 51 4e-05 UniRef50_Q7UY32 Integrase n=3 Tax=Rhodopirellula baltica RepID=Q... 51 4e-05 UniRef50_Q7UTA2 Integrase n=4 Tax=Rhodopirellula baltica RepID=Q... 51 4e-05 UniRef50_A0L875 Tyrosine recombinase XerD subunit n=2 Tax=Proteo... 51 4e-05 UniRef50_Q2GEQ3 Tyrosine recombinase XerD n=2 Tax=Neorickettsia ... 51 4e-05 UniRef50_C7H3R2 Site-specific recombinase, phage integrase famil... 50 5e-05 UniRef50_C9LJA5 Phage-related integrase n=4 Tax=Bacteroidales Re... 50 6e-05 UniRef50_D1R4B2 Putative uncharacterized protein n=1 Tax=Parachl... 50 6e-05 UniRef50_D2RA84 Tyrosine recombinase XerD n=1 Tax=Gardnerella va... 50 6e-05 UniRef50_D2R836 Tyrosine recombinase XerC n=1 Tax=Pirellula stal... 50 6e-05 UniRef50_P62590 Integrase/recombinase n=343 Tax=root RepID=INT2_... 50 6e-05 UniRef50_C6LKW3 Tyrosine recombinase XerD n=3 Tax=Clostridiales ... 50 7e-05 UniRef50_B5JZ18 Phage integrase n=14 Tax=Rhodobacteraceae RepID=... 50 7e-05 UniRef50_A1TZA4 Integron integrase n=5 Tax=Gammaproteobacteria R... 50 7e-05 UniRef50_D0U5Z8 Tyrosine recombinase XerD n=1 Tax=uncultured act... 50 7e-05 UniRef50_Q39RA3 Integron integrase n=3 Tax=Bacteria RepID=Q39RA3... 50 9e-05 UniRef50_Q3Z771 Tyrosine recombinase XerD n=5 Tax=Dehalococcoide... 50 1e-04 UniRef50_A3M1C2 Site-specific tyrosine recombinase n=15 Tax=Mora... 50 1e-04 UniRef50_C3AFM2 Putative uncharacterized protein n=2 Tax=Bacillu... 50 1e-04 UniRef50_Q30SH3 Integron integrase n=2 Tax=Bacteria RepID=Q30SH3... 49 1e-04 UniRef50_Q1AW35 Phage integrase n=1 Tax=Rubrobacter xylanophilus... 49 1e-04 UniRef50_Q67PC5 Recombinase n=2 Tax=Firmicutes RepID=Q67PC5_SYMTH 49 1e-04 UniRef50_A3DD82 Tyrosine recombinase XerD subunit n=13 Tax=Firmi... 49 1e-04 UniRef50_B4D116 Integrase family protein n=1 Tax=Chthoniobacter ... 49 1e-04 UniRef50_C1SMY6 Site-specific recombinase XerD n=1 Tax=Denitrovi... 49 1e-04 UniRef50_C8PTU7 Integron integrase n=1 Tax=Treponema vincentii A... 49 1e-04 UniRef50_Q1VZY8 Tyrosine type site-specific recombinase n=5 Tax=... 49 1e-04 UniRef50_B9XMB7 Integrase family protein n=1 Tax=bacterium Ellin... 49 1e-04 UniRef50_C9NXY9 Integron integrase IntI2 n=1 Tax=Vibrio corallii... 49 2e-04 UniRef50_A8VRZ0 Putative helix-turn-helix protein, YlxM/p13 fami... 49 2e-04 UniRef50_A6G731 Integrase/recombinase XerD n=1 Tax=Plesiocystis ... 49 2e-04 UniRef50_A3YUE8 Integron integrase n=1 Tax=Synechococcus sp. WH ... 49 2e-04 UniRef50_C0W4G9 Phage integrase family protein n=1 Tax=Actinomyc... 49 2e-04 UniRef50_D0WF42 Tyrosine recombinase XerD n=1 Tax=Slackia exigua... 49 2e-04 UniRef50_A4BJZ1 Integron integrase; Phage integrase; Phage integ... 49 2e-04 UniRef50_C7JEV7 Phage DNA recombinase XerD n=9 Tax=Acetobacterac... 49 2e-04 UniRef50_C2D6I8 Tyrosine recombinase n=1 Tax=Atopobium vaginae D... 49 2e-04 UniRef50_A4G2A1 Tyrosine recombinase XerD n=3 Tax=Proteobacteria... 49 2e-04 UniRef50_B1L3A1 Integrase family protein n=1 Tax=Candidatus Kora... 49 2e-04 UniRef50_D2RKG6 Tyrosine recombinase XerD n=1 Tax=Acidaminococcu... 49 2e-04 UniRef50_C8JT99 Tyrosine recombinase XerC subunit n=1 Tax=Lister... 49 2e-04 UniRef50_Q7NVH1 Tyrosine recombinase xerC n=1 Tax=Chromobacteriu... 49 2e-04 UniRef50_A9KZT1 Integrase family protein n=12 Tax=Alteromonadale... 48 2e-04 UniRef50_D2BHG9 Site-specific recombinase n=5 Tax=Dehalococcoide... 48 2e-04 UniRef50_D2RKK7 Tyrosine recombinase XerC n=3 Tax=Firmicutes Rep... 48 3e-04 UniRef50_D2R3Y9 Integrase family protein n=1 Tax=Pirellula stale... 48 3e-04 UniRef50_D0GL18 Tyrosine recombinase XerD n=1 Tax=Leptotrichia g... 48 3e-04 UniRef50_A8UM85 Tyrosine type site-specific recombinase n=2 Tax=... 48 3e-04 UniRef50_Q2GDW4 Site-specific recombinase, phage integrase famil... 48 3e-04 UniRef50_B5EB31 Tyrosine recombinase XerD n=4 Tax=Deltaproteobac... 48 3e-04 UniRef50_A9IB51 Putative integrase/recombinase n=2 Tax=Bordetell... 48 3e-04 UniRef50_A8FD78 Tyrosine recombinase xerC n=89 Tax=Bacillaceae R... 48 3e-04 UniRef50_Q30R56 Tyrosine recombinase XerD subunit n=5 Tax=Epsilo... 48 3e-04 UniRef50_Q2RJP7 Tyrosine recombinase XerD subunit n=1 Tax=Moorel... 48 4e-04 UniRef50_C0A614 Site-specific recombinase XerD-like protein n=1 ... 48 4e-04 UniRef50_Q8UC70 Tyrosine recombinase xerC n=18 Tax=Alphaproteoba... 48 4e-04 UniRef50_C2G1Y8 Possible tyrosine recombinase n=3 Tax=Bacteroide... 47 4e-04 UniRef50_Q89XW5 Tyrosine recombinase xerD n=10 Tax=Alphaproteoba... 47 4e-04 UniRef50_B3GAN2 AMDV4_11 n=1 Tax=uncultured virus RepID=B3GAN2_9... 47 4e-04 UniRef50_A1KS31 Tyrosine recombinase xerC n=25 Tax=Neisseriaceae... 47 4e-04 UniRef50_C0VWG3 Site-specific tyrosine recombinase XerD n=2 Tax=... 47 4e-04 UniRef50_C6I0L0 Phage integrase family protein n=1 Tax=Leptospir... 47 4e-04 UniRef50_D1B5G4 Integrase family protein n=2 Tax=Synergistaceae ... 47 5e-04 UniRef50_Q1PZN1 Similar to site-specific tyrosine recombinase n=... 47 5e-04 UniRef50_C6NUW8 Site-specific recombinase XerD n=1 Tax=Acidithio... 47 5e-04 UniRef50_C8NZN0 Integrase/recombinase XerD n=1 Tax=Erysipelothri... 47 5e-04 UniRef50_C6DY29 Putative integrase/recombinase n=1 Tax=Clostridi... 47 5e-04 UniRef50_A1TZA5 Phage integrase family protein n=2 Tax=Marinobac... 47 5e-04 UniRef50_B2S2Y8 Integrase/recombinase n=4 Tax=Treponema RepID=B2... 47 5e-04 UniRef50_Q11RL1 Site-specific recombinase n=15 Tax=Bacteroidetes... 47 5e-04 UniRef50_A8MK22 Integrase family protein n=1 Tax=Alkaliphilus or... 47 5e-04 UniRef50_Q2RYL2 Site-specific recombinase, phage integrase famil... 47 5e-04 UniRef50_D0W8E1 Tyrosine recombinase XerC n=2 Tax=Neisseria RepI... 47 5e-04 UniRef50_Q8U9U6 Tyrosine recombinase xerD n=79 Tax=Alphaproteoba... 47 5e-04 UniRef50_Q0AZB8 Tyrosine recombinase XerD subunit n=2 Tax=Firmic... 47 6e-04 UniRef50_Q1Q4J1 Similar to site-specific recombinase n=1 Tax=Can... 47 6e-04 UniRef50_Q6MD42 Probable XerD protein n=1 Tax=Candidatus Protoch... 47 6e-04 UniRef50_Q0AGB8 Integron integrase n=5 Tax=Bacteria RepID=Q0AGB8... 47 6e-04 UniRef50_C8X5W0 Integrase family protein n=1 Tax=Desulfohalobium... 47 6e-04 UniRef50_P44630 Tyrosine recombinase xerD n=84 Tax=Proteobacteri... 47 6e-04 UniRef50_C2D807 Possible integrase/recombinase XerD n=1 Tax=Atop... 47 6e-04 UniRef50_A7HPX0 Integrase family protein n=1 Tax=Parvibaculum la... 47 6e-04 UniRef50_Q04F60 Tyrosine recombinase XerD subunit n=9 Tax=Lactob... 47 7e-04 UniRef50_C9ANV1 Integrase-recombinase n=3 Tax=Lactobacillales Re... 47 7e-04 UniRef50_A9KXF6 Integrase family protein n=1 Tax=Shewanella balt... 47 7e-04 UniRef50_A0L4T4 Tyrosine recombinase XerC subunit n=2 Tax=Bacter... 47 8e-04 UniRef50_A9DNU9 Tyrosine type site-specific recombinase n=2 Tax=... 47 8e-04 UniRef50_A1S1F6 Phage integrase family protein n=1 Tax=Thermofil... 46 9e-04 UniRef50_B8FH24 Tyrosine recombinase XerC n=2 Tax=Desulfobactera... 46 9e-04 UniRef50_A9VVA9 Integrase family protein n=12 Tax=Bacillus RepID... 46 0.001 UniRef50_B1M981 Integrase family protein n=1 Tax=Methylobacteriu... 46 0.001 UniRef50_C0WCK3 Recombinase n=1 Tax=Acidaminococcus sp. D21 RepI... 46 0.001 UniRef50_A1HN49 Tyrosine recombinase XerC n=1 Tax=Thermosinus ca... 46 0.001 UniRef50_C6LJ05 Transposase n=1 Tax=Bryantella formatexigens DSM... 46 0.001 UniRef50_Q0F1F3 Tyrosine recombinase n=1 Tax=Mariprofundus ferro... 46 0.001 UniRef50_A6W8N8 Phage integrase family protein n=1 Tax=Kineococc... 46 0.001 UniRef50_C0W9S4 Tyrosine recombinase xerC n=1 Tax=Acidaminococcu... 46 0.001 UniRef50_A1ASA0 Integron integrase n=8 Tax=Bacteria RepID=A1ASA0... 46 0.001 UniRef50_B4U830 Integrase family protein n=3 Tax=Aquificaceae Re... 46 0.001 UniRef50_B1HMD0 Integrase-recombinase protein n=1 Tax=Lysinibaci... 46 0.001 UniRef50_A6DNA4 Integron integrase n=2 Tax=Lentisphaera araneosa... 46 0.001 UniRef50_Q1MRT1 Site-specific recombinase n=3 Tax=Desulfovibrion... 46 0.001 UniRef50_B8FRH1 Integrase family protein n=3 Tax=Clostridiales R... 46 0.001 UniRef50_Q0ACL7 Tyrosine recombinase XerC n=4 Tax=Gammaproteobac... 46 0.001 UniRef50_Q1QE98 Tyrosine recombinase XerC subunit n=3 Tax=Psychr... 46 0.001 UniRef50_D1W8B5 Putative tyrosine recombinase XerD n=1 Tax=Prevo... 46 0.001 UniRef50_P46352 Tyrosine recombinase xerD n=98 Tax=Bacteria RepI... 46 0.001 UniRef50_C2DP90 Resolvase n=2 Tax=Escherichia coli RepID=C2DP90_... 46 0.001 UniRef50_C7PUZ0 Tyrosine recombinase XerD n=2 Tax=Sphingobacteri... 46 0.001 UniRef50_C6JH03 Putative uncharacterized protein n=2 Tax=Clostri... 46 0.001 UniRef50_C5BQK5 Site-specific recombinase, phage integrase famil... 45 0.001 UniRef50_C5RBD8 Integrase/recombinase n=1 Tax=Weissella paramese... 45 0.001 UniRef50_Q02C57 Phage integrase family protein n=1 Tax=Candidatu... 45 0.001 UniRef50_D0W4M6 Tyrosine recombinase XerD n=1 Tax=Neisseria cine... 45 0.002 UniRef50_C3U0K2 Putative integron integrase (Fragment) n=2 Tax=u... 45 0.002 UniRef50_Q314D3 Integrase/recombinase n=5 Tax=Deltaproteobacteri... 45 0.002 UniRef50_B8I2V9 Tyrosine recombinase XerD n=5 Tax=Bacteria RepID... 45 0.002 UniRef50_B9XL74 Integrase family protein n=1 Tax=bacterium Ellin... 45 0.002 UniRef50_B3XMH5 Integrase family protein n=2 Tax=Lactobacillus R... 45 0.002 UniRef50_Q7UUP7 Probable integrase/recombinase Y4QK n=2 Tax=Rhod... 45 0.002 UniRef50_Q98FX8 Tyrosine recombinase xerD n=2 Tax=Mesorhizobium ... 45 0.002 UniRef50_A5WBQ8 Tyrosine recombinase XerD n=6 Tax=Moraxellaceae ... 45 0.002 UniRef50_Q93C64 Tyrosine recombinase xerD n=50 Tax=Bacilli RepID... 45 0.002 UniRef50_Q6ALR8 Probable site-specific recombinase (XerD-like) n... 45 0.002 UniRef50_Q1MVX1 Integron integrase (Fragment) n=14 Tax=unculture... 45 0.002 UniRef50_UPI000196CAFB hypothetical protein CATMIT_02473 n=1 Tax... 45 0.003 UniRef50_B1HMD2 Putative uncharacterized protein n=1 Tax=Lysinib... 45 0.003 UniRef50_UPI0001BCC5A1 phage integrase n=1 Tax=Aeromicrobium mar... 45 0.003 UniRef50_Q0A7P4 Integron integrase n=318 Tax=root RepID=Q0A7P4_A... 45 0.003 UniRef50_B1GYR5 Tyrosine recombinase XerC n=1 Tax=uncultured Ter... 45 0.003 UniRef50_A5D2W6 Tyrosine recombinase xerC n=5 Tax=Clostridia Rep... 45 0.003 UniRef50_Q49890 Tyrosine recombinase xerD n=54 Tax=Actinobacteri... 45 0.003 UniRef50_B8FPN6 Tyrosine recombinase XerD n=2 Tax=Desulfitobacte... 45 0.003 UniRef50_A5INK7 Phage integrase family protein n=13 Tax=Thermoto... 45 0.003 UniRef50_A6G8N0 Phage integrase n=2 Tax=Plesiocystis pacifica SI... 45 0.003 UniRef50_Q8KET0 Tyrosine recombinase xerD n=12 Tax=Chlorobiaceae... 45 0.003 UniRef50_D0BKQ9 Tyrosine recombinase XerD n=2 Tax=Firmicutes Rep... 44 0.003 UniRef50_Q8PIJ3 Integrase/recombinase n=1 Tax=Xanthomonas axonop... 44 0.003 UniRef50_Q2J882 Tyrosine recombinase XerD n=15 Tax=Bacteria RepI... 44 0.003 UniRef50_A6DI20 Phage integrase n=5 Tax=Lentisphaera araneosa HT... 44 0.004 UniRef50_A6KYQ9 Integrase n=60 Tax=Bacteria RepID=A6KYQ9_BACV8 44 0.004 UniRef50_C5D8C9 Integrase family protein n=2 Tax=Firmicutes RepI... 44 0.004 UniRef50_UPI0001C37BCF phage-specific recombinase/integrase XerD... 44 0.004 UniRef50_D0AM75 Phage integrase n=14 Tax=Bacilli RepID=D0AM75_ENTFC 44 0.004 UniRef50_B5Y8G2 Tyrosine recombinase XerC n=1 Tax=Coprothermobac... 44 0.004 UniRef50_Q0EWI0 Tyrosine recombinase XerD n=1 Tax=Mariprofundus ... 44 0.004 UniRef50_A3J7W5 Integrase n=1 Tax=Marinobacter sp. ELB17 RepID=A... 44 0.004 >UniRef50_Q47036 Probable site-specific recombinase in afa region n=45 Tax=Bacteria RepID=INTL_ECOLX Length = 246 Score = 494 bits (1272), Expect = e-138, Method: Compositional matrix adjust. Identities = 242/246 (98%), Positives = 245/246 (99%) Query: 1 MNNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ 60 MNNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ Sbjct: 1 MNNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ 60 Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 RHHMLFATLWNTGMRIGEAR++TPESFDLDGVRPFVR+LSEKVRARRGRPPKDEVRLVPL Sbjct: 61 RHHMLFATLWNTGMRIGEARIVTPESFDLDGVRPFVRVLSEKVRARRGRPPKDEVRLVPL 120 Query: 121 TDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFR 180 TDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSI VTPHTFR Sbjct: 121 TDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSISVTPHTFR 180 Query: 181 HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILR 240 HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILR Sbjct: 181 HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILR 240 Query: 241 TLPPLK 246 TLPPLK Sbjct: 241 TLPPLK 246 >UniRef50_Q46776 Resolvase n=16 Tax=root RepID=Q46776_ECOLX Length = 178 Score = 339 bits (869), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 164/189 (86%), Positives = 174/189 (92%), Gaps = 12/189 (6%) Query: 57 MPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVR 116 MPDQRHHMLFAT+WNTG+RIGEAR LTPESFDLDG+RPFVR+LSEKVR Sbjct: 1 MPDQRHHMLFATMWNTGIRIGEARTLTPESFDLDGLRPFVRVLSEKVR------------ 48 Query: 117 LVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTP 176 LVPLTD+S+VRQMESWM+TTRPRRREPLW VTDETMRNWLKQAV+RAEADGVHFSIPVTP Sbjct: 49 LVPLTDVSFVRQMESWMVTTRPRRREPLWPVTDETMRNWLKQAVKRAEADGVHFSIPVTP 108 Query: 177 HTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAA 236 HTFRHSYIMHMLYHRQPRKVIQALAGH+DPRSMEVYTRVFALDMAATLAVPFTGDG DAA Sbjct: 109 HTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRVFALDMAATLAVPFTGDGHDAA 168 Query: 237 EILRTLPPL 245 +ILRTLPPL Sbjct: 169 QILRTLPPL 177 >UniRef50_Q6TFY0 ResD n=8 Tax=Enterobacteriaceae RepID=Q6TFY0_ERWAM Length = 246 Score = 211 bits (537), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 123/237 (51%), Positives = 149/237 (62%), Gaps = 12/237 (5%) Query: 3 NVIPLQNSPERVSLLPIAPG------VDFATALSLRRMATSTGATPAYLLAPEVSALLFY 56 N PLQ S S I G D+A AL+LR MA S P YLLAPEVS L Y Sbjct: 2 NTFPLQISQNSRSD-AIGTGRVTYAYFDYADALALREMA-SQADLPKYLLAPEVSVFLRY 59 Query: 57 MPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRAR-RGRPPKDE- 114 +PD R +LF TLWNTG RI EA LT SF LDG RPFVR+ + K R R RGRP KDE Sbjct: 60 VPDLRQQVLFDTLWNTGARINEALALTGASFQLDGSRPFVRLKTLKQRQRGRGRPGKDEE 119 Query: 115 -VRLVPLTDISYVRQMESWMITTRPRRREPLWAV-TDETMRNWLKQAVRRAEADGVHFSI 172 RLVPLTD YVR++ ++ T R +++ LW V +D T RNW+++A+ A+ D V FSI Sbjct: 120 VFRLVPLTDPQYVRKVREFLTTLRIGKQQLLWPVQSDNTPRNWIRKALDLAKRDSVTFSI 179 Query: 173 PVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFT 229 PVT HTFRHS+ MH++ H P KV+QA AGH + E YTRVFALD+ V F+ Sbjct: 180 PVTCHTFRHSFCMHLIQHGVPLKVVQAYAGHSRLETTETYTRVFALDVGRQYGVRFS 236 >UniRef50_A7M7E5 Int2 n=1 Tax=Serratia entomophila RepID=A7M7E5_9ENTR Length = 236 Score = 204 bits (519), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 109/227 (48%), Positives = 148/227 (65%), Gaps = 7/227 (3%) Query: 20 APGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEA 79 +P DFA A+++RRMA + PAYLLAPE++ LL M D R MLF LWNTG RI EA Sbjct: 6 SPYFDFAQAVAMRRMALNLSDQPAYLLAPEITLLLDNMTDLRRRMLFDFLWNTGARINEA 65 Query: 80 RMLTPESFDLDGVRPFVRILSEKVR----ARRGRPPKDE--VRLVPLTDISYVRQMESWM 133 +TP+ LD V+PFV + + K R RRGRP KD R +PL D S+ R++ + Sbjct: 66 LAVTPKDIVLDAVKPFVVLRTLKQRNHTAGRRGRPGKDTPVKRTLPLLDPSFARRLRDHL 125 Query: 134 ITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSI-PVTPHTFRHSYIMHMLYHRQ 192 T +P+W ++D+T RNWLK+A+ A+ +G+HFSI +TPHTFRHS+ MH+LY+R Sbjct: 126 ATFTRYVTKPVWEISDDTARNWLKEALGHAQRNGMHFSIESITPHTFRHSFAMHLLYNRV 185 Query: 193 PRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEIL 239 K++Q+ GHRD +S E+YTRVFALD+A L V F A ++L Sbjct: 186 HPKILQSFMGHRDYKSTEIYTRVFALDVAGQLGVRFDMTPEQAFKLL 232 >UniRef50_P18021 Resolvase n=83 Tax=root RepID=REDM_ECOLX Length = 260 Score = 192 bits (489), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 121/254 (47%), Positives = 155/254 (61%), Gaps = 21/254 (8%) Query: 6 PLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHML 65 P+ ++ + V L P+A +D+ AL+LR+M+ P YLLAPEVSALL Y+PD R ML Sbjct: 7 PIHHARDAVQL-PVA--IDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKML 63 Query: 66 FATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARR-----GRPPKDEV--RLV 118 ATLWNTG RI EA LT F L PFV++ + K R + GR P + RLV Sbjct: 64 LATLWNTGARINEALALTRGDFSLTPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLV 123 Query: 119 PLTDISYVRQMESWMIT---------TRPRRREP--LWAVTDETMRNWLKQAVRRAEADG 167 PL+D YV Q+++ + T R R E +W VTD T+R W+ +AV A ADG Sbjct: 124 PLSDSWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADG 183 Query: 168 VHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVP 227 V FS+PVTPHTFRHSY MHMLY P KV+Q+L GH+ S EVYT+VFALD+AA V Sbjct: 184 VTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKVFALDVAARHRVQ 243 Query: 228 FTGDGRDAAEILRT 241 F+ DA +L+ Sbjct: 244 FSMPESDAVTMLKN 257 >UniRef50_B3IBH1 Resolvase n=1 Tax=Escherichia coli E22 RepID=B3IBH1_ECOLX Length = 236 Score = 192 bits (489), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 105/223 (47%), Positives = 141/223 (63%), Gaps = 4/223 (1%) Query: 21 PGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEAR 80 P ++ TA++LR MA P YLLAPEV+ LL Y+PD+R MLFATLW TG RI EA Sbjct: 11 PATNYETAIALRGMALLQPYLPKYLLAPEVAVLLHYLPDERQRMLFATLWITGPRITEAL 70 Query: 81 MLTPESFDLDGVRPFVRILSEKVRAR-RGRPPKDE--VRLVPLTDISYVRQMESWMITTR 137 +TPE LDG R +R+ K R R RGRP DE R+VPL D +YV Q+ ++ T R Sbjct: 71 TITPEDLQLDGPRHCIRLRKLKQRQRGRGRPSADEKIARIVPLLDAAYVDQLRRYLATFR 130 Query: 138 PRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIP-VTPHTFRHSYIMHMLYHRQPRKV 196 RR PL+AV+ +T W++QA+ RA + + F++P + P T RHS+ MH+ ++ P KV Sbjct: 131 TGRRRPLFAVSRKTAWLWMQQAIDRAREEVIEFALPAINPKTLRHSFAMHLYFNHVPPKV 190 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEIL 239 +QA GH S EVY +VFALD+A L V F+ RD + +L Sbjct: 191 VQAYMGHERYESTEVYLKVFALDVAPQLGVTFSLAHRDYSHLL 233 >UniRef50_C4UMA5 Site-specific recombinase in afa region n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UMA5_YERRU Length = 234 Score = 184 bits (467), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 90/112 (80%), Positives = 98/112 (87%) Query: 1 MNNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ 60 M+NVIPLQNSPER+S L IAPGVDFATAL+LRRMAT+ G TP YLLAPE+SALL YMPDQ Sbjct: 89 MSNVIPLQNSPERISRLSIAPGVDFATALALRRMATANGKTPFYLLAPEISALLHYMPDQ 148 Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPK 112 RHH LF+TLWNTG RIGEA + PESF LDG RPFVRILSEKVR RRGRPP+ Sbjct: 149 RHHFLFSTLWNTGARIGEACSMQPESFILDGPRPFVRILSEKVRTRRGRPPR 200 >UniRef50_D1S150 DNA integration/recombination/invertion protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1S150_SEROD Length = 264 Score = 182 bits (463), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 106/235 (45%), Positives = 138/235 (58%), Gaps = 14/235 (5%) Query: 19 IAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGE 78 IAP D+ AL LR+MA + P YLLAPEV+A L Y+ + H LWNTG RI E Sbjct: 21 IAPQ-DYQRALELRQMAMTYDDLPKYLLAPEVAAQLHYVEEWSQHAFVNLLWNTGARINE 79 Query: 79 ARMLTPESFDLDGVRPFVRILSEKVR-ARRGRPPKDEV--RLVPLTDISYVRQMESWMIT 135 A + F L+ P V + K R A GRP K + R+VPLTD +V ++ + Sbjct: 80 ALAVCRRDFRLNVTMPHVIYRTAKQRRAGPGRPKKGKSAHRIVPLTDPLFVDELRRLFAS 139 Query: 136 TR------PRRRE----PLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIM 185 T+ P E P+W VTD T+RNWL +A +A DG+ FSIP+TPH FRHSY M Sbjct: 140 TKEQFEINPETGERTPLPIWQVTDRTVRNWLTKAENQARRDGIRFSIPITPHVFRHSYAM 199 Query: 186 HMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILR 240 HM+Y P KV+Q L GH P S EVYTRVFALD+ A+ V F+ +D+ +++R Sbjct: 200 HMIYQGTPLKVLQGLLGHEKPESTEVYTRVFALDIVASHQVQFSLPAQDSLDMVR 254 >UniRef50_A4SUL6 Resolvase n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SUL6_AERS4 Length = 256 Score = 169 bits (428), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 98/223 (43%), Positives = 133/223 (59%), Gaps = 5/223 (2%) Query: 6 PLQNSPERVSLL-PIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHM 64 PL N+ + L+ P + A +LR +A + P YLLA EV A+L +PD + + Sbjct: 15 PLGNALQGTPLVRPAGNPEQWRVATALRNLAIAHTDAPRYLLAHEVGAVLAMLPDLQRRV 74 Query: 65 LFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRAR-RGRPPKDEV--RLVPLT 121 L ATLWNTG RI EA LTP F+LDG RPFV + + K R+R +GRP + RLVPL Sbjct: 75 LIATLWNTGARINEALALTPGDFELDGGRPFVVLRTLKQRSRGKGRPRAGDAVKRLVPLL 134 Query: 122 DISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRH 181 D + + ++ T + R +W VTD+T+RNWLK+A GVH +P+TPH FRH Sbjct: 135 DPVFAQLAREYLATVKLARGARIWPVTDQTVRNWLKEADTALRGRGVHLVVPLTPHVFRH 194 Query: 182 SYIMHMLYHRQPR-KVIQALAGHRDPRSMEVYTRVFALDMAAT 223 ++ MH+L K +QA GHR +S EVYT+V ALD AA+ Sbjct: 195 AFAMHLLLQGNLHIKRLQAYLGHRSLKSTEVYTQVLALDAAAS 237 >UniRef50_B2TSE9 Resolvase n=9 Tax=Enterobacteriaceae RepID=B2TSE9_SHIB3 Length = 299 Score = 166 bits (419), Expect = 8e-40, Method: Compositional matrix adjust. Identities = 101/240 (42%), Positives = 138/240 (57%), Gaps = 28/240 (11%) Query: 28 ALSLRRMATSTGAT-PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPES 86 A ++R +A GA P YL+APEVS LL Y+ D M F TLWNTG R+ EA L P Sbjct: 51 ARNMRDLAAQIGAGMPKYLIAPEVSLLLSYIDDLNIRMYFETLWNTGARLNEALALKPAD 110 Query: 87 FDLDGVRPF------VRILSEKVRA---RRGRP---------------PKD-EVRLVPLT 121 F L R + ++ L ++++ R GRP P++ VRLVP+ Sbjct: 111 FMLTPTRQYPQPVVILKTLKQRLKEAERRPGRPTTRHPPLHPDPRYRKPQEPAVRLVPVL 170 Query: 122 DISYVRQMESWMITTRPR-RREPLWAVTD-ETMRNWLKQAVRRAEADGVHFSIPVTPHTF 179 D Y +M ++ T + R + +P+W +T +T NW+ AV RAE DGV FS+PVTPHTF Sbjct: 171 DAGYALRMREYLATWKKRIKHQPVWDITSRQTPLNWINTAVARAERDGVTFSVPVTPHTF 230 Query: 180 RHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEIL 239 RHSY MH+ P +V+Q+L GHR RS E+YTRVF+LD+ + FT D R A ++L Sbjct: 231 RHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFSLDVLTGSGLSFTCDPRRAKQLL 290 >UniRef50_C8QGI0 Integrase family protein n=2 Tax=Pantoea sp. At-9b RepID=C8QGI0_9ENTR Length = 239 Score = 146 bits (368), Expect = 6e-34, Method: Compositional matrix adjust. Identities = 95/236 (40%), Positives = 122/236 (51%), Gaps = 42/236 (17%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDG-------VRP 94 P YLLAPEV+ LL + D R + LWNTG R+ E LT E F LD P Sbjct: 2 PRYLLAPEVAVLLAKVTDLRKRLFIDALWNTGGRLNEILPLTREDFVLDDPLTGAPLSSP 61 Query: 95 FVRILSEKVRAR-----------------------------RGRPPKDEVRLVPLTDISY 125 FV + + K R R PP R VPLTD + Sbjct: 62 FVVLRTLKQRGLEEAARNRSRRRGRPTKEEQQAEREAEAEIRDNPP----RAVPLTDPGF 117 Query: 126 VRQMESWMITTRPRRREPLWAV-TDETMRNWLKQAVRRAEADGVHFSI-PVTPHTFRHSY 183 V+++ W T P LW + +++T R+W+ QAV AE DGV FSI PVTP TFR S+ Sbjct: 118 VQRLREWFATVNPPAGARLWDIRSEDTARSWISQAVAAAERDGVTFSIRPVTPKTFRDSF 177 Query: 184 IMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEIL 239 MH++ H+ P+KVIQ L GH+D +S E YTRVFALD+ L V F+ D +A +L Sbjct: 178 AMHLVQHQVPQKVIQTLMGHKDAKSTEWYTRVFALDVTRQLGVRFSMDPAEARSLL 233 >UniRef50_B2VB47 Putative integrases, DNA breaking-rejoining enzymes n=1 Tax=Erwinia tasmaniensis RepID=B2VB47_ERWT9 Length = 309 Score = 131 bits (330), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 97/278 (34%), Positives = 133/278 (47%), Gaps = 62/278 (22%) Query: 25 FATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTP 84 + L +R +A S YLL EVSAL+ Y +LF LWNTGMR+ EA LT Sbjct: 17 LSCQLRMRSLAASMEGGVRYLLPVEVSALIGYAGSHEQKILFRLLWNTGMRVSEALALTA 76 Query: 85 ESFDL-----------------DGV---RP--------------------------FVRI 98 L D V RP VR Sbjct: 77 RDCILTQDDEVRLMRRRGARKSDAVTKGRPDGPLRDSGGSPLLPQVIPDDSYQAAVLVRS 136 Query: 99 LSEKV-RARRGRPPKDE-------VRLVPLTDISYVRQMESW--MITTRPRRR---EPLW 145 L A RG+P + E RL+PL D ++ ++S+ + P RR EPLW Sbjct: 137 LKRHCGSATRGKPTEAERRAENAAKRLIPLLDPAFAADLKSYRDGVLFGPVRRALDEPLW 196 Query: 146 AVTD-ETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHR 204 V+ +++ NW+ AV RA ADGV FS+PV+PHTFRHSY M+ML +++ AL GHR Sbjct: 197 TVSSRQSVLNWINAAVTRAAADGVQFSVPVSPHTFRHSYAMYMLNAGVTDRLLMALMGHR 256 Query: 205 DPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILRTL 242 +++ +YTRVFALD + +PF D DA ++L+ + Sbjct: 257 SLKTLGIYTRVFALDRLSGSYLPF--DCPDARDLLKNV 292 >UniRef50_A1U029 Phage integrase family protein n=2 Tax=Marinobacter RepID=A1U029_MARAV Length = 246 Score = 92.8 bits (229), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 95/196 (48%), Gaps = 10/196 (5%) Query: 34 MATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVR 93 + S P YLL PE+ LL H ++ +W TG R+ E +TP SF DG Sbjct: 50 LLESLDTMPKYLLKPEILGLLESESHPMHRLILDLMWCTGARVSEVLAITPASFIDDGYD 109 Query: 94 PFVRILSEKVRARRGRPPKDEV-----RLVPLTDISYVRQMESWMITTRPRRREPLWAVT 148 ++ + ++ GRP K + R +P+ D + +++S++ + R+ E ++ +T Sbjct: 110 --FGVMLKTLKQGAGRPSKRSLQRSPKRFIPILDRDFQTRIQSYLWMGKFRKDERIFPIT 167 Query: 149 DETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRS 208 + + + + + + G + HTFRHS+ +H+L H +P K + L GHR S Sbjct: 168 RQAVSANIDRLIDQV---GGEPPFKIGCHTFRHSFAVHLLLHGRPLKFVSQLLGHRSVES 224 Query: 209 MEVYTRVFALDMAATL 224 EVYT V D A L Sbjct: 225 PEVYTNVLTFDGAHFL 240 >UniRef50_A4BJY9 Resolvase n=1 Tax=Reinekea blandensis MED297 RepID=A4BJY9_9GAMM Length = 262 Score = 82.0 bits (201), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/217 (29%), Positives = 104/217 (47%), Gaps = 27/217 (12%) Query: 23 VDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARML 82 +D+A L LR +YLL PE++ L+ ++ +LFATLW TG RI E + Sbjct: 45 IDWARFLKLRPWVLQHDPELSYLLLPEMTQLIESARTEQMRVLFATLWVTGGRISEVLAM 104 Query: 83 TP-ESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRR 141 TP + D + + + + ++ R G+P RLVP+ D Y ++ ++ R + Sbjct: 105 TPAHCINDDHLGQGIALPT--LKKRNGQP----YRLVPVVDPHYWAMLKRFLGEHRGGQH 158 Query: 142 EPLW---------------AVTDETMRNWLKQAVRRAEADGVHFS--IPVTPHTFRHSYI 184 P++ A+T T++ W A+ R H++ + VTPHTFRHS+ Sbjct: 159 APIFQSRTKTTDAKRAKPKALTSRTVQRWTDDAMERLRE---HYNPGLRVTPHTFRHSFA 215 Query: 185 MHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMA 221 ++ L H + +VI GH R E Y +V +LD Sbjct: 216 VNALLHGRDIQVISGWLGHASVRETERYLKVLSLDTG 252 >UniRef50_A3XLJ3 Tyrosine type site-specific recombinase n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XLJ3_9FLAO Length = 405 Score = 77.4 bits (189), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 67/206 (32%), Positives = 101/206 (49%), Gaps = 20/206 (9%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P L EV LL P+ +H + A L++ G+RIGE L ++ DLD ++ ++ Sbjct: 209 PVVLSRKEVIDLLRATPNLKHRTILALLYSAGLRIGELLALRCDAIDLDRMQVHIK---- 264 Query: 102 KVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR--PRRREPLWAVTDETMRNWLKQA 159 K + R+ R K +VPL ++Y MES+ T P R ++ +R +LK++ Sbjct: 265 KGKGRKDRTVKLAQAVVPLL-LNY---MESYAPTHYLIPGRDGQGYSAG--AIRTFLKKS 318 Query: 160 VRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALD 219 RA G+ VTPHT RHSY HM+ H + IQ L GH P + +YT V D Sbjct: 319 CTRA---GI--KKAVTPHTLRHSYATHMMDHGVALRHIQELLGHAKPETTMIYTHVSQQD 373 Query: 220 M---AATLAVPFTGDGRDAAEILRTL 242 + A L V + ++A E + L Sbjct: 374 LFEVANPLDVTISQITKNAKEQQKVL 399 >UniRef50_B3HBE4 ResA resolvase n=3 Tax=root RepID=B3HBE4_ECOLX Length = 92 Score = 72.8 bits (177), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 38/72 (52%), Positives = 45/72 (62%) Query: 18 PIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIG 77 P+ +D+ AL+LR+MA G P YLLAPEVSAL Y+PD ML ATLWNT + I Sbjct: 15 PLPVAIDYPAALALRQMALIQGKLPKYLLAPEVSALHHYVPDLHRRMLLATLWNTYICIN 74 Query: 78 EARMLTPESFDL 89 EA LT F L Sbjct: 75 EALALTLSDFSL 86 >UniRef50_A0LZY5 Phage integrase family protein n=3 Tax=Bacteria RepID=A0LZY5_GRAFK Length = 385 Score = 70.9 bits (172), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 21/183 (11%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P L E+ LL + +H + A ++++G+R+GE L + D+D + IL + Sbjct: 187 PTVLSKEEIIDLLRLTRNLKHRCILALIYSSGLRVGELINLHLKDIDIDRKQ----ILIK 242 Query: 102 KVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRR----EPLWAVTDETMRNWLK 157 + + R+ R +PL + +++ T P+R + +R++LK Sbjct: 243 QAKGRKDRYVMLAESFLPL--------LYNYLQTYEPKRYFTEGYDNKKYSSSAIRSFLK 294 Query: 158 QAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFA 217 + RRA+ S VTPHT RHS+ HML + + IQ L GH P + +YT V Sbjct: 295 DSCRRAK-----ISKKVTPHTLRHSFATHMLENGTDLRYIQELLGHSKPETTMIYTHVAK 349 Query: 218 LDM 220 D+ Sbjct: 350 KDL 352 >UniRef50_Q0W0L4 Integrase n=2 Tax=Euryarchaeota RepID=Q0W0L4_UNCMA Length = 278 Score = 68.2 bits (165), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 81/172 (47%), Gaps = 20/172 (11%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P YL E++ LL D R ++ L+ TG+R+ E + + D D R +++ Sbjct: 108 PVYLTVSEMNDLLDTAIDTRDRIIVRLLYATGVRVSELVNIRKKDIDFD--RCTIKVF-- 163 Query: 102 KVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVR 161 G+ K+ + LVP T V++M + + R L+ +T T++ +KQ R Sbjct: 164 ------GKGAKERIVLVPET---VVKEMYDYAASLSNDDR--LFNLTPRTVQRDIKQLAR 212 Query: 162 RAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYT 213 RA+ + VTPH RHS+ HML + IQ L GH + ++YT Sbjct: 213 RAKINK-----NVTPHKLRHSFATHMLQNGGNVVAIQKLLGHSSLNTTQIYT 259 >UniRef50_C0Q8I9 Probable site-specific recombinase n=2 Tax=Salmonella enterica RepID=C0Q8I9_SALPC Length = 53 Score = 67.8 bits (164), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 33/43 (76%), Positives = 37/43 (86%) Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP 138 +R LSEK +ARR PPKDEVRLVPLTDISYVRQ+ESW+IT P Sbjct: 1 MRALSEKTQARRECPPKDEVRLVPLTDISYVRQIESWVITPVP 43 >UniRef50_C6JHS7 Transposase n=7 Tax=Bacteria RepID=C6JHS7_9FIRM Length = 285 Score = 67.4 bits (163), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 50/179 (27%), Positives = 81/179 (45%), Gaps = 21/179 (11%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P L E+SA+L P+ +H + AT+++ G+R+ E L + + ++ Sbjct: 105 PTVLTKAEISAILDATPNLKHKAMIATMYSGGLRVSEVTHLHYDD---------ISRTNK 155 Query: 102 KVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR--REPLWA---VTDETMRNWL 156 + R G+ D R L D + E W RPR W +T +++ + Sbjct: 156 TIHIRDGKSRSD--RYTLLADRTLEILTEYWFQCGRPRGILFPSSWTGDYLTKDSVIQFF 213 Query: 157 KQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 +++ RA G+ V+ H RHS+ H+ K IQAL GHRDP+S E+Y V Sbjct: 214 RESAERA---GI--QKHVSTHCLRHSFASHLFESGCDIKYIQALLGHRDPKSTEIYLHV 267 >UniRef50_P55632 Putative integrase/recombinase y4qK n=15 Tax=Proteobacteria RepID=Y4QK_RHISN Length = 308 Score = 65.5 bits (158), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 87/190 (45%), Gaps = 19/190 (10%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P L EV L + D +HH + T + G+RI EA L P D+D R VR+ Sbjct: 117 PIILSPDEVQHFLGCVLDLKHHAILTTCYAAGLRISEAVQLKPT--DIDSQRMVVRV--- 171 Query: 102 KVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWA---VTDETMRNWLKQ 158 +G+ KD ++ + +R + W + PR +E L+ R+ + Q Sbjct: 172 ----EQGKGQKDRYVMLSPKLLEILR--DYWRM---PRPKEWLFPGDRAGHPITRDAVGQ 222 Query: 159 AVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFAL 218 A +A D S PVTPH+ RH++ +H+L + IQ L GHR + Y R+ Sbjct: 223 ACAKAH-DLSRLSKPVTPHSLRHAFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATN 281 Query: 219 DMAATLAVPF 228 + AT + PF Sbjct: 282 KVCAT-SSPF 290 >UniRef50_C0QM80 Tyrosine recombinase XerD n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QM80_DESAH Length = 295 Score = 63.9 bits (154), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 56/194 (28%), Positives = 85/194 (43%), Gaps = 29/194 (14%) Query: 42 PAYLLAPEVSALLFYMPDQRHH------MLFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 P +L +V+ALL MPD+ H + L+ G+R+ E L E DL V F Sbjct: 108 PRFLSQDQVTALL-EMPDRTTHRGLRNAAMLEILYGAGLRVSELVGLKTEQVDL--VACF 164 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDISYVRQME------SWMITTRPRRREPLWAVTD 149 VR+ + R R +VP + R ME WM+ R + + Sbjct: 165 VRLFGKGSRER----------IVPFGSHARQRTMEWLEWGRPWMLKKNASRYLFVARAGN 214 Query: 150 ETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSM 209 R + +++ A G SI V+PHT RHS+ H+L + +Q + GH D S Sbjct: 215 PMTRQGFWKLLKK-YALGAGISIKVSPHTLRHSFATHLLEGGADLRSVQTMLGHADIAST 273 Query: 210 EVYTRV---FALDM 220 ++YT V + +DM Sbjct: 274 QIYTHVSRQYLVDM 287 >UniRef50_A6H1H3 Integrase/recombinase n=2 Tax=Bacteria RepID=A6H1H3_FLAPJ Length = 347 Score = 62.8 bits (151), Expect = 9e-09, Method: Compositional matrix adjust. Identities = 50/187 (26%), Positives = 88/187 (47%), Gaps = 13/187 (6%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P L E+ +L + +H + + +++ G+R E L P D+D R V I Sbjct: 171 PNVLSKEEIKLILEAHSNIKHKTMLSLIYSCGLRRSELLHLKPT--DIDSKRGIVIIRQS 228 Query: 102 KVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVR 161 K + R P ++ LV L + + +SW+ + P ++++++N LKQA+ Sbjct: 229 KGKKDRIAPLSPKI-LVMLREYYSNYKPKSWLFEGQI----PGETYSEKSLQNVLKQALE 283 Query: 162 RAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMA 221 +A+ + PV+ H RHSY H+L + IQ L GH ++ E+YT V ++ Sbjct: 284 KAK-----IAKPVSLHWLRHSYATHLLESGTDLRYIQELLGHSSTKTTEIYTHVSTKNLQ 338 Query: 222 ATLAVPF 228 + PF Sbjct: 339 Q-IKSPF 344 >UniRef50_D1N8W9 Tyrosine recombinase XerD n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N8W9_9BACT Length = 299 Score = 62.4 bits (150), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 91/197 (46%), Gaps = 31/197 (15%) Query: 42 PAYLLAPEVSALLFYMP-------DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRP 94 P +L EV A L P + R+ + L+++G+R+ E L + D D Sbjct: 109 PDFLSEAEVDAFLKAFPASVKEPFEMRNRAILEVLYSSGLRVSELARLPLTAVDFDN--E 166 Query: 95 FVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP-----RRREPLWAVTD 149 +R++ G+ K R+VP+ ++ +R + ++ RP R P ++ Sbjct: 167 LLRVV--------GKGSK--TRIVPIGKVA-LRTLRRYLADVRPLLAEKNPRSPYVFLSK 215 Query: 150 ET---MRNWLKQAVRRAEA-DGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRD 205 R W+ V+ A A G+H +I PHT RHS+ H+L H +VIQ + GH D Sbjct: 216 SGRPLNREWIWNVVKVAAARAGIHKNIH--PHTLRHSFASHLLAHGADLRVIQEMLGHAD 273 Query: 206 PRSMEVYTRVFALDMAA 222 + E+YT + + +AA Sbjct: 274 ISTTEIYTHIDSNRLAA 290 >UniRef50_A4C321 Tyrosine type site-specific recombinase n=4 Tax=Bacteroidetes/Chlorobi group RepID=A4C321_9FLAO Length = 374 Score = 62.0 bits (149), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 23/179 (12%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P L E+ A+ + + +H L + L++ G+RIGEA +T E D+D R + Sbjct: 198 PIILSGAEIKAIFSTITNLKHKALLSLLYSAGLRIGEA--ITLEVTDIDCQRMLIY---- 251 Query: 102 KVRARRGRPPKDEVRLV-PLTDISYVRQMESWMITTRPRRREPLWA----VTDETMRNWL 156 R+ + KD L+ P+ +++ + + + RP+ A +D + + L Sbjct: 252 ---GRQAKGKKDRYTLLSPV----FLKILRDYYVAYRPKNSLFEGANGSTYSDASAQKVL 304 Query: 157 KQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 K A+ +A G+ T H+ RHS+ H+L + IQ L GH P++ +YT V Sbjct: 305 KNALFKA---GIR--KKATLHSLRHSFATHLLEKGTDIRYIQELLGHSSPKTTMIYTHV 358 >UniRef50_B0TP43 Integron integrase n=9 Tax=Bacteria RepID=B0TP43_SHEHH Length = 320 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 64/224 (28%), Positives = 91/224 (40%), Gaps = 35/224 (15%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGV 92 R AT P L EVS +L + + R ++ L+ +G+R+ E L + DL Sbjct: 96 RYATKQRQLPIVLSTEEVSEVLCQL-NGRDQLIVQLLYGSGLRVSECLRLRIQDIDLARC 154 Query: 93 RPFVR----------ILSEKVRARRGRPPKDEVRLVPLTDISYV---------------- 126 VR ILS+K A + D R + + D +Y Sbjct: 155 SLTVRNGKGHKDRQTILSQKC-AIKLPAYIDAARAIQIKDNTYCIGPSLPNALERKYPNA 213 Query: 127 -RQMESWMITTRPRRREPLWAVTDETMRNWLKQAV-RRAEADGV---HFSIPVTPHTFRH 181 RQ WM P T R+ L Q+V R+A A V H VT HTFRH Sbjct: 214 FRQ-AGWMFVF-PSTTTSDNPYTKTHCRHHLHQSVIRKALAAAVRKTHIIKRVTCHTFRH 271 Query: 182 SYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLA 225 S+ H+L + + IQ L GH D + ++YT V A T++ Sbjct: 272 SFATHLLQAGRDIRTIQELLGHNDVNTTQIYTHVLGQHYAGTVS 315 >UniRef50_B9YCM7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCM7_9FIRM Length = 304 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 49/190 (25%), Positives = 83/190 (43%), Gaps = 28/190 (14%) Query: 38 TGATPAYLLAPEVSALLFYM----PDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVR 93 T + P Y E+ ++ D R H + L+ G+R+ E LT DL+ Sbjct: 104 TQSLPVYCTRDEIEKIMAQFGHSPKDIRWHAIAELLYGCGLRVSECAALTMNQVDLE--L 161 Query: 94 PFVRILSEKVRARRGRPPKDEVRLV--------PLTDISYVRQMESWMITTRPRRREPLW 145 +RI + + R PK +++V PL Y ++ SW+ TR ++ Sbjct: 162 GMLRIWGKGNKERLVPMPKQTIKIVREYVDTVRPL----YQKKPTSWLFITRLGKK---- 213 Query: 146 AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRD 205 T ++ + +K +A G+ P+TPH RH+Y HML + +Q L GH D Sbjct: 214 -TTTASIESMIKSVCIQA---GIQ--KPITPHKLRHTYATHMLEGGADLRSVQELLGHSD 267 Query: 206 PRSMEVYTRV 215 + ++YT + Sbjct: 268 ITTTQIYTHI 277 >UniRef50_Q72SA5 Tyrosine recombinase xerD n=6 Tax=Leptospira RepID=XERD_LEPIC Length = 298 Score = 61.2 bits (147), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 54/193 (27%), Positives = 85/193 (44%), Gaps = 40/193 (20%) Query: 40 ATPAYLLAPEVSALLFYMPDQ-----RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRP 94 + P YL E+ L + + R +F L+++G+RI EA L DL+G Sbjct: 109 SIPDYLTQDEIEELFASIKEDNLYELRDKCIFELLYSSGLRISEACNLRLNDMDLEG--- 165 Query: 95 FVRILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMITTRPRRREPLWAVT 148 ++ V + GR RLVP + S Y++Q +++ + R E L+ Sbjct: 166 ----MTLTVEGKGGRQ-----RLVPFGEKSLDILNRYLKQSRPFIL--KSRNCEYLFVSK 214 Query: 149 DETMRN----W--LKQAVRRAEADGVHFSI--PVTPHTFRHSYIMHMLYHRQPRKVIQAL 200 + N W L ++R SI VTPHT RHS+ H+L + K +Q L Sbjct: 215 KGSYINRKSVWRLLNHYIKRT-------SILKKVTPHTLRHSFATHLLENHADLKSVQEL 267 Query: 201 AGHRDPRSMEVYT 213 GH D + ++YT Sbjct: 268 LGHIDIATTQIYT 280 >UniRef50_Q9F567 IntI2 protein n=38 Tax=Bacteria RepID=Q9F567_ECOLX Length = 325 Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 87/219 (39%), Gaps = 46/219 (21%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P+ + A EV +L M D R+ ++F L+ G+RI E L + FD D I Sbjct: 103 PSVISANEVQRILQVM-DTRNQVIFTLLYGAGLRINECLRLRVKDFDFDNGC----ITVH 157 Query: 102 KVRARRGRPPKDEVRLVP----LTDISYVRQMESWMITTRPR------------RREPLW 145 + + R RL+P L + + + Q + + P R+ W Sbjct: 158 DGKGGKSRNSLLPTRLIPAIKXLIEQARLIQQDDNLQGVGPSLPFALDHKYPSAYRQAAW 217 Query: 146 AVT---------------------DETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYI 184 D R LK AV++A G+ S VT HTFRHS+ Sbjct: 218 MFVFPSSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKA---GI-VSKRVTCHTFRHSFA 273 Query: 185 MHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAAT 223 H+L + + +Q L GH D ++ ++YT V A T Sbjct: 274 THLLQAGRDIRTVQELLGHNDVKTTQIYTHVLGQHFAGT 312 >UniRef50_C1SMP5 Site-specific recombinase XerD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMP5_9BACT Length = 295 Score = 60.5 bits (145), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 49/177 (27%), Positives = 88/177 (49%), Gaps = 27/177 (15%) Query: 47 APEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRAR 106 +P++S+ L Y R ++F T+++TGMRI E ++ + D+D R +++ + + R Sbjct: 120 SPDMSSGLGY----RDRIIFETMYSTGMRISE--LVGLKVLDMDMHREIMKVTGKGSKQR 173 Query: 107 ----RGRPPKDEVRLVPLTDISYVRQM-ESWMITTRPRR---REPLWAVTDETMRNWLKQ 158 G + + + S V++ E W+ +R + RE +W + +K+ Sbjct: 174 FVPMYGSLAEKMKTYLDIRHDSLVKERDEGWLFLSRNGKKLDREYVWMI--------IKK 225 Query: 159 AVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 RA G+ + V+PHT RHS+ H+L + + IQ L GH D + E YT+V Sbjct: 226 YCERA---GIKKN--VSPHTLRHSFATHLLTNGADLRTIQVLLGHVDLSTTERYTQV 277 >UniRef50_A4CN61 Tyrosine type site-specific recombinase n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CN61_9FLAO Length = 386 Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 60/183 (32%), Positives = 85/183 (46%), Gaps = 21/183 (11%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P L EV LL + +H L A L+ G+R+GE L D+ P ++L Sbjct: 187 PGVLGKAEVMRLLQQTRNLKHRTLTALLYGCGLRVGELINLQLAEVDI----PRRQLL-- 240 Query: 102 KVRARRGRPPKDEV---RLVPL-TDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLK 157 VRA +GR + V RL+PL D ++ RP ++ ++ T ++R +LK Sbjct: 241 -VRAGKGRKDRRVVLPERLLPLLGDYLTAYAPSRYLAEGRPGQQ---YSAT--SIRAFLK 294 Query: 158 QAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFA 217 RRA G+ VTPH RHSY H+L + IQ L GH P + VYT V Sbjct: 295 ANSRRA---GI--LKKVTPHMLRHSYATHLLEQGVDIRYIQELLGHARPETTMVYTHVSR 349 Query: 218 LDM 220 D+ Sbjct: 350 QDL 352 >UniRef50_Q3AB72 Tyrosine recombinase XerC n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AB72_CARHZ Length = 297 Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 75/162 (46%), Gaps = 27/162 (16%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R+ L + G+RIGE LT DLD + +VR+ + R R +VPL Sbjct: 129 RNRALLELFYGAGLRIGEIAGLTLN--DLDLTQGYVRVTGKGRRQR----------IVPL 176 Query: 121 TDISYVRQMESWMITTRPR---RREPLW------AVTDETMRNWLKQAVRRAEADGVHFS 171 + + ++ ++ RP + E L+ +T +R + Q V++A + Sbjct: 177 GKYA-LDSLKLYLEAGRPAFKPKSEKLFLNQQGAGLTVRGIRYLISQIVKKA-----GLN 230 Query: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYT 213 +TPHTFRHSY H+L + +Q L GH+ + E+YT Sbjct: 231 RKITPHTFRHSYATHLLEGGADIRAVQELLGHKRLSTTEIYT 272 >UniRef50_A2U2P8 Phage integrase family protein n=1 Tax=Polaribacter sp. MED152 RepID=A2U2P8_9FLAO Length = 385 Score = 59.7 bits (143), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 91/183 (49%), Gaps = 21/183 (11%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P+ L EV ++ + +H + A L++ G+RI E L + F ++ + V+ Sbjct: 190 PSVLSQEEVLRIISVTTNLKHRAIIALLYSCGLRISELINLKLKDFHIERKQLIVK---- 245 Query: 102 KVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRR--EPLWA--VTDETMRNWLK 157 G+ KD R V L + S++ ++++ + P+ E + + ++R +LK Sbjct: 246 -----SGKGRKD--RYVSLAE-SFMPLLKNYYYSYEPKEFFVEGMNGEKYSASSVRAFLK 297 Query: 158 QAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFA 217 ++ ++A G+ + VTPHT RHSY H+L + + IQ+L GH P + +YT V Sbjct: 298 KSCKKA---GIQRA--VTPHTLRHSYATHLLENGVDIRYIQSLLGHSRPETTMIYTHVKR 352 Query: 218 LDM 220 D+ Sbjct: 353 KDL 355 >UniRef50_Q5HFS5 Tyrosine recombinase xerD n=101 Tax=Firmicutes RepID=XERD_STAAC Length = 295 Score = 59.3 bits (142), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 30/188 (15%) Query: 42 PAYLLAPEVSALLFYMPD------QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 P L EV ALL PD R + L+ TGMR+ E L E+ +L + F Sbjct: 108 PDVLNVDEVLALL-ETPDLNKINGYRDRTMLELLYATGMRVSELIHLELENVNL--IMGF 164 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRN- 154 VR+ + D+ R+VPL D + + + +++ T RP+ + VT+ N Sbjct: 165 VRVFGKG----------DKERIVPLGD-AVIEYLTTYIETIRPQLLKK--TVTEVLFLNM 211 Query: 155 ----WLKQAV-RRAEADGVHFSIP--VTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPR 207 +QA+ + + +GV +I +TPHT RHS+ H+L + + +Q + GH D Sbjct: 212 HGKPLSRQAIWKMIKQNGVKANIKKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDIS 271 Query: 208 SMEVYTRV 215 + ++YT V Sbjct: 272 TTQLYTHV 279 >UniRef50_UPI0001698363 tyrosine recombinase XerD n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698363 Length = 227 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 80/169 (47%), Gaps = 35/169 (20%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R+ + TL+ G+R+ E + E+ +L+ F+RI G+ K+ R+VP+ Sbjct: 65 RNAAMLETLYGAGLRVSELVSMKMENINLEA--SFIRIF--------GKGSKE--RIVPI 112 Query: 121 TDISYVRQMESWMITTRP--------------RRREPLWAVTDETMRNWLKQAVRRAEAD 166 + + ++ +W++ RP R +P+ T + + K + + A Sbjct: 113 GSFA-IEKVRNWIMHGRPIILKNIPSHYLFVARAGKPM------TRQGFWKLLKKYSRAS 165 Query: 167 GVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 G+ S +TPHTFRHS+ H+L + +Q + GH D + ++YT V Sbjct: 166 GI--SKKITPHTFRHSFATHLLEGGADLRSVQTMLGHSDISTTQIYTHV 212 >UniRef50_B7IFN3 Tyrosine recombinase xerC n=3 Tax=Thermotogaceae RepID=XERC_THEAB Length = 283 Score = 58.9 bits (141), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 51/180 (28%), Positives = 82/180 (45%), Gaps = 23/180 (12%) Query: 42 PAYLLAPEVSALLFYMPDQ---RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRI 98 P +L EVS+L+ ++ R + L+ G+RI E + + D+ + PF+R+ Sbjct: 109 PDFLTEDEVSSLIGAFNEENELRQKTAISLLYYAGLRISE--LCNLRTTDISFIPPFLRV 166 Query: 99 LSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR---RREPLWAVTDETMRNW 155 G+ KD RLVPL D + ++ ++ P+ V T+ W Sbjct: 167 -------EMGKGRKD--RLVPLPD-KVIPILKKYIDLENPKIFVFENGKKHVHPSTVFRW 216 Query: 156 LKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 LK+ V+RA + V PHT RHSY H++ KV+Q L GH + + +Y V Sbjct: 217 LKEGVKRA-----NIKKDVHPHTLRHSYATHLIRKGVNIKVVQELLGHTNLSTTSIYLHV 271 >UniRef50_A8F7B4 Tyrosine recombinase xerC n=1 Tax=Thermotoga lettingae TMO RepID=XERC_THELT Length = 286 Score = 58.9 bits (141), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 50/176 (28%), Positives = 84/176 (47%), Gaps = 16/176 (9%) Query: 42 PAYLLAPEVSALL-FYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILS 100 P +LL E+ LL F M +QR +++ + L+ G+R+ E L E DL FV+I Sbjct: 109 PDFLLPSEIQKLLEFSMKNQRDYLMLSLLYFCGLRVSELCNLRVE--DLSFSPAFVKI-- 164 Query: 101 EKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAV 160 G+ KD R+VPLT ++E+++ + + L+ + + + + V Sbjct: 165 -----TMGKGKKD--RIVPLTS-KLAEKLENYITSCGKSPEDYLFGSQIKIHPSTVFRIV 216 Query: 161 RR-AEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 R+ G+ I PHT RH++ H+L +V+Q L GH + + VY V Sbjct: 217 RKYTMMCGIKKRIH--PHTLRHTFATHLLQKGVNIRVVQDLLGHSNLSTTSVYLHV 270 >UniRef50_A6DQI4 Tyrosine recombinase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DQI4_9BACT Length = 292 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 88/198 (44%), Gaps = 50/198 (25%) Query: 42 PAYLLAPEVSALLFYMPDQ------RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 P YL PE+ LL ++ D+ R+ + L++ G+RI E L +SF+ + F Sbjct: 105 PDYLSLPEIERLL-HIYDEAIPLQFRNKFIIELLYSCGLRISELCGLRTDSFNYES--GF 161 Query: 96 VRILSEKVRARRGRPPKDEVRLVPL-TDIS-----YVRQMESWMI------------TTR 137 +R+ +G+ K+ R VP T ++ Y++ + + R Sbjct: 162 LRV--------KGKGSKE--RSVPFGTQVASMSRQYIKNIRPQLCKKNNPPELIVSNNGR 211 Query: 138 PRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVI 197 P R +W +LK+A +AE + + PH RHS+ H+L + ++I Sbjct: 212 PLTRSRVWQ--------FLKEAAIKAEINK-----NLHPHVLRHSFASHLLSNNADLRII 258 Query: 198 QALAGHRDPRSMEVYTRV 215 Q L GH D + E+YT V Sbjct: 259 QELLGHADIATTEIYTHV 276 >UniRef50_D0LHX4 Integrase family protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LHX4_HALO1 Length = 395 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 77/167 (46%), Gaps = 25/167 (14%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R + L+ +G+R+GE L DLD + R+ S VR RRG+ K+ R+VPL Sbjct: 190 RDRAIAEVLYGSGLRVGECCAL-----DLDDI-DRARLSSALVRVRRGKGGKE--RIVPL 241 Query: 121 TDISYVRQMESWMITTRPRRREPLWAVTDE------------TMRNWLKQAVRRAEADGV 168 + V +++++ RP R+P D T R+ + R A+ G Sbjct: 242 GRQA-VAALDAYL-NVRPLLRDPKTGARDPAALFLSYRGTRLTTRSVQRMIGRNAQEVGA 299 Query: 169 HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 + TPH RHS+ H+L + IQ L GH S ++YT+V Sbjct: 300 Y---EATPHALRHSFATHLLDSGVDLRAIQELLGHASLASTQIYTKV 343 >UniRef50_C4FX95 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FX95_9FIRM Length = 331 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 74/165 (44%), Gaps = 28/165 (16%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R ML L+ TGMR+ E L+ E +L+ +R+L G+ K+ R+VPL Sbjct: 162 RDRMLLEVLYATGMRVSELSELSLERLNLEV--QLIRVL--------GKGNKE--RIVPL 209 Query: 121 TDISYVRQMESWMITTRP---RRREPLWAVTDE-------TMRNWLKQAVRRAEADGVHF 170 D S + + ++ RP R P +TD+ +R LK V Sbjct: 210 GD-SATQAIRDYLSHLRPKIDRNNSPYLLLTDKGAPMSPRQIRTRLKSLVEEQA-----M 263 Query: 171 SIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 ++ + PH RHS+ H+L + +Q L GH + S ++YT V Sbjct: 264 NLKIYPHKLRHSFATHLLNKGADLRTVQELLGHANLSSTQIYTHV 308 >UniRef50_C5AC95 Tyrosine recombinase XerD n=82 Tax=cellular organisms RepID=C5AC95_BURGB Length = 341 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 54/191 (28%), Positives = 87/191 (45%), Gaps = 35/191 (18%) Query: 37 STGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDL-DGVRPF 95 S A L APEV L R + ++ +G+R+ E ML L DGV Sbjct: 158 SEAQVEALLAAPEVGTAL----GLRDRTMLELMYASGLRVSELVMLKTVEVGLNDGV--- 210 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP-----RRREPLW----- 145 VR++ G+ K+ RLVP ++++ +E ++ RP R + L+ Sbjct: 211 VRVM--------GKGSKE--RLVPFGEVAH-GWIERYLREARPALLGARTSDALFVTARG 259 Query: 146 -AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHR 204 +T + N +K+ RAE ++PHT RH++ H+L H +V+Q L GH Sbjct: 260 EGMTRQQFWNIIKRHAMRAE-----IRAHLSPHTLRHAFATHLLNHGADLRVVQMLLGHS 314 Query: 205 DPRSMEVYTRV 215 D + ++YT V Sbjct: 315 DISTTQIYTHV 325 >UniRef50_UPI0001C31AAB integrase family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31AAB Length = 313 Score = 57.8 bits (138), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 58/192 (30%), Positives = 83/192 (43%), Gaps = 38/192 (19%) Query: 44 YLLAP-EVSALLFYMPDQ-----RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVR 97 Y+L P EV+ALL +P R LF + +G+R E ML S + DG R VR Sbjct: 124 YVLKPVEVAALLDRIPADTALALRDRALFELAYASGLRAEELVMLDVGSIEFDGER--VR 181 Query: 98 ILSEKVRAR---RGRPPK-------DEVRLVPLTDIS----YVRQMESWMITTRPRRREP 143 + + + R G P D R T S ++ + + T+ RRR Sbjct: 182 VEGKGAKTRIVPAGEPALKAIARYLDRARPALATAESDGALFLSKSGRRLSTSDVRRR-- 239 Query: 144 LWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 +R W +QA GV + V+PH RHS+ H+L + + IQ L GH Sbjct: 240 --------LRVWARQAA------GVSTAGGVSPHALRHSFATHLLENGADLRSIQELLGH 285 Query: 204 RDPRSMEVYTRV 215 + +VYTRV Sbjct: 286 ASISTTQVYTRV 297 >UniRef50_A6DT72 Phage integrase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DT72_9BACT Length = 328 Score = 57.8 bits (138), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 49/183 (26%), Positives = 77/183 (42%), Gaps = 17/183 (9%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P+ L E++ +L Y+ RH + +++ G+R+ EA + P D+ R + I Sbjct: 102 PSVLTQKEIAHVLSYVKRWRHRVCLTAIYSMGLRVSEALKMRPS--DICVERKILHI--- 156 Query: 102 KVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR------RREPLWAVTDETMRNW 155 R + +D RLVPL D+S + W+ P R + D+ M Sbjct: 157 ----RNSKGCRD--RLVPLPDLSLQMINDFWLSHRSPNYIFPQIRDKSNMVNIDKHMYIG 210 Query: 156 LKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 Q R V+ H RHSY HM+ P IQ + GHRD ++ +Y R+ Sbjct: 211 AVQGAFRMAVLESGIMKRVSVHNLRHSYATHMMEKGVPIMAIQEILGHRDIKTTMIYARL 270 Query: 216 FAL 218 L Sbjct: 271 TEL 273 >UniRef50_B5YF74 Tyrosine recombinase XerD n=2 Tax=Dictyoglomus RepID=B5YF74_DICT6 Length = 296 Score = 57.4 bits (137), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/171 (26%), Positives = 78/171 (45%), Gaps = 37/171 (21%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R+ + T + TG+R+ E L ++ DL+ +VR G+ K+ R+VPL Sbjct: 130 RNMAILETFYATGIRVSELVNLNIQNVDLE--EKYVRCF--------GKGEKE--RIVPL 177 Query: 121 TDISYVRQMESWMIT---TRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIP---- 173 D + V ++ ++ P+ +E L+ L + R GV F I Sbjct: 178 GDYA-VESLKRYLSVRHLFNPKDKEALF----------LNKKGERITRQGVWFIIKAYSK 226 Query: 174 -------VTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFA 217 V+PHTFRHS+ H+L + +++Q L GH D + ++YT + + Sbjct: 227 ILGLPKKVSPHTFRHSFATHLLSNGADIRIVQELLGHSDIATTQIYTHIVS 277 >UniRef50_Q6LRH1 Hypothetical integrase-recombinase n=1 Tax=Photobacterium profundum RepID=Q6LRH1_PHOPR Length = 180 Score = 57.0 bits (136), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 46/166 (27%), Positives = 75/166 (45%), Gaps = 15/166 (9%) Query: 53 LLFYMPDQ-RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPP 111 +L M Q R+ + F TL+ G+R+GE LT D + +V R G+ Sbjct: 1 MLISMTKQKRYQIFFLTLYTMGLRLGEGLSLTVHDIDQH---------TMQVHIRDGKGG 51 Query: 112 KDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAV-TDETM-RNWLKQAVRRAEADGVH 169 KD + VP ++ +R W+ PR P TD M R +++A++ D Sbjct: 52 KDRLVPVPQRTLNALR--AHWLTHRHPRLIFPGKGCNTDNPMDRGGVQKAMKLVLKD-CG 108 Query: 170 FSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 + P++PH+ RH + H+L + +Q L GH + YTR+ Sbjct: 109 INKPISPHSLRHCFATHLLEQGLDLRSLQILLGHASLNTTARYTRM 154 >UniRef50_Q5WFP9 Site-specific tyrosine recombinase n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WFP9_BACSK Length = 300 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 86/191 (45%), Gaps = 35/191 (18%) Query: 42 PAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV 96 P +L E+ L +P ++R + L+ TGMR+ E ML + +D V V Sbjct: 112 PTFLYEEEMEHWLLALPANKPLEKRDKAIIELLYATGMRVSECSMLALDQWD--RVSETV 169 Query: 97 RILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP---RRREPL--------- 144 R+ +GR R VP+ ++ V +ES++ RP R +P Sbjct: 170 RVFG------KGRKE----RYVPVGKMA-VSAVESYIHEARPKLLRANDPTSHLFLNYRG 218 Query: 145 WAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHR 204 A++D ++R +++ + D ++PH RHS+ H+L + +Q L GH+ Sbjct: 219 GALSDRSIRKIVEKRL-----DEAAMQKKISPHAIRHSFATHLLNAGADLRAVQELLGHQ 273 Query: 205 DPRSMEVYTRV 215 ++ +VYT V Sbjct: 274 SLKTTQVYTHV 284 >UniRef50_C8NEN7 Integrase/recombinase XerC n=2 Tax=Granulicatella RepID=C8NEN7_9LACT Length = 318 Score = 57.0 bits (136), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 83/191 (43%), Gaps = 33/191 (17%) Query: 59 DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLV 118 DQR+ L L+ TGMR+ E LT E DLD V G+ K+ R V Sbjct: 131 DQRNKALVEVLYATGMRVSELTNLTLEQLDLDNSIILVI----------GKGSKE--RYV 178 Query: 119 PLTDISYVRQMESWMITTRP-----RRREPLWA--------VTDETMRNWLKQAVRRAEA 165 P+ D + +E+++ R R+E + +T +R L++ ++ + Sbjct: 179 PIGDFART-ALETYLEEGRKDLMAKERKEHFFVFVNHLGDPLTTNGVRYILEKLIQESG- 236 Query: 166 DGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVF--ALDMAAT 223 ++ + PH RH++ H+L + + +Q L GH S ++YT V AL Sbjct: 237 ----LTLKIHPHMLRHTFATHLLNNGADMRTVQELLGHVSLSSTQIYTHVTKEALQQNYQ 292 Query: 224 LAVPFTGDGRD 234 L P + G++ Sbjct: 293 LYFPRSKAGKN 303 >UniRef50_B1VH11 Integrase/recombinase n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VH11_CORU7 Length = 303 Score = 56.6 bits (135), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 51/194 (26%), Positives = 89/194 (45%), Gaps = 37/194 (19%) Query: 40 ATPAYLLAPEVSALLFYMPDQ--------RHHMLFATLWNTGMRIGEARMLTPESFDLDG 91 + P L EV+A+L P+ R L L++TG R+ E L D+D Sbjct: 112 SIPKALSIAEVTAILESCPNDDAASLIQIRDRALLEMLYSTGARVSELLGL-----DVDD 166 Query: 92 VRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWA----- 146 V P +EK+ RG+ K+ R+VP+ D + + ++ +++ RP + A Sbjct: 167 VDP-----TEKLIIVRGKGSKE--RVVPVGDPA-LDALQHYLVRVRPAFNKKGSAALFLN 218 Query: 147 -----VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALA 201 + ++ N + +A GV +PH+FRHS+ H+L +V+Q L Sbjct: 219 RNGGRMGRQSAFNMVSSVSEKAGVAGV------SPHSFRHSFATHLLEGGADIRVVQELL 272 Query: 202 GHRDPRSMEVYTRV 215 GH + + ++YT+V Sbjct: 273 GHSNVVTTQIYTKV 286 >UniRef50_B3QWZ3 Integrase family protein n=11 Tax=Bacteroidetes/Chlorobi group RepID=B3QWZ3_CHLT3 Length = 289 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 81/180 (45%), Gaps = 25/180 (13%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P L EV ++L + +H + +++ G+R E L P D+D R + IL Sbjct: 110 PKVLSKNEVKSILVSTDNIKHKCILMLIYSAGLRRSELLNLKPT--DIDSGRMLIHILG- 166 Query: 102 KVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTD------ETMRNW 155 + KD + L+ + +RQ + P++ L+ D ++ N Sbjct: 167 ------AKGKKDRISLLSENLLKLLRQ---YYKEFHPKK--YLFEGLDGGKYSPTSVANI 215 Query: 156 LKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 LK+A +A G+H + VTPH RHS+ H+L + IQ L GH ++ E+YT V Sbjct: 216 LKKASLKA---GIHKN--VTPHMLRHSFATHLLEQGTDLRYIQELLGHESSKTTEIYTHV 270 >UniRef50_C3Q7K5 Tyrosine type site-specific recombinase n=7 Tax=Bacteroidales RepID=C3Q7K5_9BACE Length = 376 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 26/181 (14%) Query: 42 PAYLLAPEVSALLFYM-PDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILS 100 P L E+ ++L PD R +F+ L++ G+RI E L P D++ R +R+ Sbjct: 191 PDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISELLDLKPH--DINVSRSLIRV-- 246 Query: 101 EKVRARRGRPPKDEVRLV------PLTDISYVRQMESWMITTRPRRREPLWAVTDETMRN 154 R+G+ KD L+ LT+ + + + + W+ + EP T+ + Sbjct: 247 -----RQGKGRKDRYTLLSKPLVRKLTEYTKLYKPQEWLFERY--KGEPF---TESIVSK 296 Query: 155 WLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTR 214 LK+A + A G+ + V PH RHS+ H++ K+++ L GH ++ E+Y Sbjct: 297 KLKEAAKEA---GI--TKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVH 351 Query: 215 V 215 + Sbjct: 352 I 352 >UniRef50_Q5LEL4 Putative tyrosine recombinase n=2 Tax=Bacteroides fragilis RepID=Q5LEL4_BACFN Length = 294 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 47/181 (25%), Positives = 85/181 (46%), Gaps = 26/181 (14%) Query: 42 PAYLLAPEVSALLFYM-PDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILS 100 P L E+ ++L PD R +F+ L++ G+RI E L P D++ R +R+ Sbjct: 109 PDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISELLDLKPH--DINVSRSLIRV-- 164 Query: 101 EKVRARRGRPPKDEVRLV------PLTDISYVRQMESWMITTRPRRREPLWAVTDETMRN 154 R+G+ KD L+ LT+ + + + + W+ + EP T+ + Sbjct: 165 -----RQGKGRKDRYTLLSKPLVRKLTEYTKLYKPQEWLFERY--KGEPF---TESIVSK 214 Query: 155 WLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTR 214 LK+A + A G+ + V PH RHS+ H++ K+++ L GH ++ E+Y Sbjct: 215 KLKEAAKEA---GI--TKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQLKTTEMYVH 269 Query: 215 V 215 + Sbjct: 270 I 270 >UniRef50_B0VFY6 Tyrosine recombinase xerD n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFY6_9BACT Length = 313 Score = 56.6 bits (135), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 54/197 (27%), Positives = 84/197 (42%), Gaps = 48/197 (24%) Query: 42 PAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV 96 P L E+ LL +P + R+ ++ L+ TGMRI E +L+ DL+ Sbjct: 126 PDVLTVEEMFQLLNSLPVKTPLEIRNKLMMELLYATGMRISE--LLSISLHDLN------ 177 Query: 97 RILSEKVRARRGRPPKDEVRLVPLTD----------------ISYVRQMESWMITTRPRR 140 L+E+V G+ K R VP D + ++Q E + R R Sbjct: 178 --LTERVILVHGKGSKQ--RYVPYVDTLDELFAKYLKQSRPILLKLKQSELLFLNNRGER 233 Query: 141 --REPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQ 198 R W + L++AV A + VTPHTFRHS+ H+L +++Q Sbjct: 234 MSRMGFWKI--------LRKAVLEA-----NIKKEVTPHTFRHSFATHLLEGGVNLRIVQ 280 Query: 199 ALAGHRDPRSMEVYTRV 215 AL GH + ++YT + Sbjct: 281 ALLGHSSIDTTQIYTHI 297 >UniRef50_C8R2R7 Tyrosine recombinase XerD n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2R7_9DELT Length = 356 Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 49/165 (29%), Positives = 77/165 (46%), Gaps = 28/165 (16%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R+H + L+ TGMR+ E L + + G +RIL G+ K+ RLVP Sbjct: 194 RNHAMLHLLYATGMRVSELVKLPVAAVNQAG---HLRIL--------GKGSKE--RLVPF 240 Query: 121 TDISYVRQMESWMITTRPR----RREPLWAVTDET-----MRNWLKQAVRR-AEADGVHF 170 + + + M ++ RPR RR VT +R W Q VR+ A G+ Sbjct: 241 GEAAR-QAMAVYITQARPRLLKKRRSDFLFVTGRGTAMTRLRFW--QIVRKSARERGI-- 295 Query: 171 SIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 + ++PH RHS+ H+L H + +Q + GH D + ++YT V Sbjct: 296 AREISPHVLRHSFATHLLEHGADLRAVQVMLGHADIATTQIYTHV 340 >UniRef50_D2MQ50 Phage integrase, N-terminal SAM domain protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MQ50_9FIRM Length = 297 Score = 56.6 bits (135), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 54/212 (25%), Positives = 96/212 (45%), Gaps = 37/212 (17%) Query: 23 VDFATA----LSLRRMATSTGATPAYLLAPEVSALL--FYMPDQRHHM---LFATLWNTG 73 ++F+T +SL ++ + P++L EV LL F D + + + ++ G Sbjct: 85 IEFSTGEENPVSLIQVRKNETYLPSFLSVEEVKQLLNSFTRDDPKQELNRTILELIYACG 144 Query: 74 MRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWM 133 +RI E LT L+ +RIL G+ K+ R+VP+ + V+ ++ ++ Sbjct: 145 LRISELCSLTVAQVQLET--GILRIL--------GKGNKE--RIVPIPN-QVVKDLDYYL 191 Query: 134 ITTRPRRREPLWAV--TDETMRNWLK--------QAVRRAEADGVHFSIPVTPHTFRHSY 183 RP +W T+ N L Q + + +A F +TPH+ RH+Y Sbjct: 192 NLIRP-----IWNQHKTNTFFINHLGNRITARSIQLLLKQKAMECGFQKDITPHSLRHTY 246 Query: 184 IMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 H+L ++IQ L GH + ++ E+YT V Sbjct: 247 ATHLLQAGADLRIIQELLGHSNIKTTEIYTHV 278 >UniRef50_A6TQC7 Phage integrase family protein n=3 Tax=Clostridia RepID=A6TQC7_ALKMQ Length = 354 Score = 56.2 bits (134), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 47/180 (26%), Positives = 83/180 (46%), Gaps = 24/180 (13%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P L EV ++L + + +H + ++ G+R+GE L D D R+L Sbjct: 176 PNILSQREVLSILDSVNNIKHKSILLLTYSAGLRVGEVVRLKVGDIDSD------RML-- 227 Query: 102 KVRARRGRPPKD------EVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNW 155 + R+G+ KD EV L L + + + + W+ P +E + +T+ +++ Sbjct: 228 -IHVRQGKGRKDRYTILSEVALSTLRKYAMIEKPKDWLF---PGGKENCF-LTERSVQKT 282 Query: 156 LKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 A +RA+ H S+ H+ RHS+ H+L + IQ L GH ++ E+YT V Sbjct: 283 FSVACKRAKVKK-HASV----HSLRHSFATHLLEGGTDLRYIQELLGHSSSKTTEIYTHV 337 >UniRef50_C0QJ38 Site-specific recombinase XerD (DNA replication, recombination and repair) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ38_DESAH Length = 297 Score = 56.2 bits (134), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/191 (26%), Positives = 84/191 (43%), Gaps = 38/191 (19%) Query: 40 ATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRP 94 + P +L E+ LL + D+R+ +F ++TGMR+ E L D+D Sbjct: 114 SIPQFLTVDELFTLLDSIKTRTVVDKRNRAVFELFYSTGMRVSELSNLNVG--DIDRESH 171 Query: 95 FVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESW----------MITTRPRRREPL 144 VR+ RG+ ++ RLVP+ D + ++ ++ + + R R Sbjct: 172 LVRV--------RGKGNRE--RLVPVGDRA-LKAVDDYRTCIDGEFGALFLNRDAHR--- 217 Query: 145 WAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHR 204 +D ++R L V+ +PV+PHT RHS+ HML + IQ + GH Sbjct: 218 --FSDSSIRRVLSVLVK-----ACGLGVPVSPHTLRHSFATHMLDAGADLRGIQEILGHA 270 Query: 205 DPRSMEVYTRV 215 S ++YT V Sbjct: 271 SLSSTQIYTHV 281 >UniRef50_D2LLC2 Integrase family protein n=2 Tax=Aciduliprofundum boonei T469 RepID=D2LLC2_9EURY Length = 270 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 50/194 (25%), Positives = 92/194 (47%), Gaps = 29/194 (14%) Query: 34 MATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVR 93 +A P L EV +++ + +H ++ L+ GMR+ E R + E D++ R Sbjct: 92 LAKKKEKLPVVLSRDEVKRMIYGTHNIKHRLVLMFLYYAGMRLQEVRNIRWE--DVEFER 149 Query: 94 PFVRILSEKVRARRGRPPKDEVRLVPL------TDISYVRQMESWM-ITTRPRRREPLWA 146 + I + +G D+ R+V L T Y R+ + ++ ++ R ++ P Sbjct: 150 EIIHI-----KVAKG----DKERVVFLHPNLKNTLEIYGRKSKGYVFMSQRGKKYSP--- 197 Query: 147 VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDP 206 ++++ +K A RRA+ + VTPHT RHS+ H+L + IQ L GH+ Sbjct: 198 ---KSIQLIVKNAARRAKINK-----NVTPHTLRHSFATHLLEGGADIRYIQQLLGHKHL 249 Query: 207 RSMEVYTRVFALDM 220 ++ ++YT V D+ Sbjct: 250 KTTQIYTHVANKDI 263 >UniRef50_A8YV25 Integrase/recombinase n=13 Tax=Lactobacillus RepID=A8YV25_LACH4 Length = 301 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/192 (26%), Positives = 86/192 (44%), Gaps = 36/192 (18%) Query: 42 PAYLLAPEVSALLFYMPDQRHHM------LFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 P L E++ LL PD + + + TL+ TGMR+ E ++ E DL Sbjct: 112 PVALNQKEINDLLA-QPDIKRKLGLRDRAILETLYATGMRVSE--LINLELQDLHEDLGL 168 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLW---AVTDET- 151 VR+L G+ K+ RL+P++ ++ W+ + R+PL DE Sbjct: 169 VRVL--------GKGSKE--RLIPISSVAL-----HWIKQYQKEVRDPLILKAGQNDEHI 213 Query: 152 -MRNWLKQAVRRA-------EADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 + + KQ R+A + VTPHT RH++ H+L + +V+Q + GH Sbjct: 214 FLNSRAKQLTRQAIWQMIKKYCQSAGITKDVTPHTLRHTFATHLLENGADLRVVQEILGH 273 Query: 204 RDPRSMEVYTRV 215 D + ++YT + Sbjct: 274 SDISTTQIYTNL 285 >UniRef50_Q1MS58 Site-specific recombinase XerC n=1 Tax=Lawsonia intracellularis PHE/MN1-00 RepID=Q1MS58_LAWIP Length = 313 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 55/183 (30%), Positives = 81/183 (44%), Gaps = 25/183 (13%) Query: 60 QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVP 119 R++ L L+ +G+RI EA L D+ FVR++ G+ K+ RL P Sbjct: 144 HRNNALLELLYGSGLRISEALCLNVS--DIRTEDGFVRVI--------GKGNKE--RLAP 191 Query: 120 LTDISYVRQMESW-----MITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPV 174 L+D S V +E W M+ T E V R +Q +R E + +P+ Sbjct: 192 LSDTSIV-ALEEWLAIRHMVATLG---EQALFVGVRGKRLHRRQTIRILEELCLQAGLPL 247 Query: 175 T--PHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVF--ALDMAATLAVPFTG 230 T PHT RHS+ H+L + +Q L GH + + YT + L A A PF+G Sbjct: 248 TTAPHTLRHSFATHLLEGGANLRAVQELLGHARLSTTQRYTHITLDKLIQAYDKAHPFSG 307 Query: 231 DGR 233 R Sbjct: 308 TLR 310 >UniRef50_B1GYP8 Tyrosine recombinase XerD n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYP8_UNCTG Length = 294 Score = 55.8 bits (133), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 47/187 (25%), Positives = 79/187 (42%), Gaps = 31/187 (16%) Query: 42 PAYLLAPEVSALLFYMPDQ-----RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV 96 P L EV LL + D R+ + L+ G+R+ E L +L+ F+ Sbjct: 110 PDILTFDEVDLLLNSINDDDEMHIRNKAMLELLYAAGLRVSELINLKFSDINLEDC--FL 167 Query: 97 RILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWL 156 RI+ G+ K+ RLVP + + + I+ ++R P V D + L Sbjct: 168 RII--------GKGSKE--RLVPFGNKA------KFFISIYLKKRRPCLNVNDHIFISRL 211 Query: 157 KQAVRRAE--------ADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRS 208 + + R E A V + +TPHT RHS+ H+L + +Q + GH + Sbjct: 212 GKKLSRIEFWRQLKNIAKNVGINKNITPHTLRHSFASHLLKGGADIRFVQEMLGHASITT 271 Query: 209 MEVYTRV 215 ++YT + Sbjct: 272 TQIYTHL 278 >UniRef50_C7NP08 Integrase family protein n=3 Tax=Halobacteriaceae RepID=C7NP08_HALUD Length = 338 Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 63/214 (29%), Positives = 85/214 (39%), Gaps = 55/214 (25%) Query: 45 LLAPE-VSALLFYMP----DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRIL 99 +L PE ALL Y+ R H L A LW+TG+R G A L E +D + R Sbjct: 121 MLDPEEAEALLDYLGRFQYASRAHTLMALLWHTGIRTGAAHALDVEDYDPEEQRL----- 175 Query: 100 SEKVRARRGRPPKDE---VRLVPLTDISYVRQMESWMITTRPR-----RREPLWAVTD-- 149 KVR R G P K++ RLV L+D R ++ W+ RP R+PL + + Sbjct: 176 --KVRHRSGTPLKNKEEGERLVALSD-EVCRILDDWLSHERPDVVDEYGRQPLLSTSHGR 232 Query: 150 -------ETMRNWLK-----------------QAVRRAEADGVHFSIPVTPHTFRHSYIM 185 ET+ W + +AV+ V+PH R I Sbjct: 233 AHKTTVRETVYRWTRPCQYVSECPHGRQQDSCEAVKGNRKTASKCPSSVSPHAIRRGSIT 292 Query: 186 HMLYHRQPRKVI--------QALAGHRDPRSMEV 211 H L P KV+ + L H D RS EV Sbjct: 293 HHLSEDVPEKVVSDRMNVGQEVLDMHYDQRSEEV 326 >UniRef50_B6YWN8 Probable tyrosine recombinase xerC-like n=9 Tax=Thermococcaceae RepID=XERCL_THEON Length = 282 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 84/186 (45%), Gaps = 29/186 (15%) Query: 40 ATPAYLLAPEVSALLFYMP--DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVR 97 + P L EV +L +P +R ++F L+ G+R+ E + + D+D R + Sbjct: 95 SLPKSLTREEVRKILSVIPPTKKRDRLIFLLLYGAGLRVSE--LCNLKKSDVDFERSLII 152 Query: 98 ILSEKVRARRGRPPKDEVRLVPLTDISYVR--------QMESWMITTRPRRREPLWAVTD 149 + R G+ KD V +P + ++ E ++ R R++ L + Sbjct: 153 V-------RGGKGAKDRVVPIPAFLLEGIKAYLETRDDDSEYLIVEDRRERKDKL---SP 202 Query: 150 ETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSM 209 +T+ LK+ RA I VTPH RHS+ HML + + IQ L GH + + Sbjct: 203 KTVWYLLKKYGDRA-------GIRVTPHMLRHSFATHMLENGVDIRAIQELLGHSNLSTT 255 Query: 210 EVYTRV 215 ++YT+V Sbjct: 256 QIYTKV 261 >UniRef50_C4LIF6 Integrase/recombinase n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LIF6_CORK4 Length = 326 Score = 55.5 bits (132), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 72/160 (45%), Gaps = 18/160 (11%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R + L+ TGMRI EA L +S D + +VR++ +GR RLVP+ Sbjct: 164 RDRAVIELLYGTGMRISEALNLDIDSIDRN--HAYVRVVG------KGRKE----RLVPI 211 Query: 121 TDISYVRQMESWMITTRPR--RREPLWAVTDETMRNWLKQAVRR---AEADGVHFSIPVT 175 + +++W++ RP +R + +Q+V + A A+ V Sbjct: 212 G-APALHAIDAWLVRGRPSMVKRSDKALFLNARGNRLGRQSVWKFLHAAAERCGLGDSVG 270 Query: 176 PHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 PHT RHSY H+L + +Q L GH + ++YT V Sbjct: 271 PHTLRHSYATHLLQGGADIRAVQELLGHASVTTTQIYTAV 310 >UniRef50_Q01TI9 Phage integrase family protein n=6 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01TI9_SOLUE Length = 301 Score = 55.1 bits (131), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 55/189 (29%), Positives = 84/189 (44%), Gaps = 22/189 (11%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P L EV+ L+ + RH + L+ TGMR E L E D+D R + I Sbjct: 108 PTVLSRDEVARLIAAAGNLRHRTILMALYATGMRRAELCHLRIE--DIDKERMVLHI--- 162 Query: 102 KVRARRGRPPKDEVRLVPLTDISYVR-------QMESWMITTRPRRREPLWAVTDETMRN 154 R+G+ KD +P ++ +R +W+ + RR P +T++ + + Sbjct: 163 ----RQGKGGKDREVPLPPKLLAQLRIHYRALPHRSAWVFPSLQSRR-PDQPMTEKAVWH 217 Query: 155 WLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTR 214 +QA RA G+ S V PHT RH + H+L + VIQ L GH DPR +Y Sbjct: 218 ACRQAAWRA---GITKS--VHPHTLRHCFATHLLDNGAELPVIQVLLGHSDPRDTMIYLH 272 Query: 215 VFALDMAAT 223 + + A Sbjct: 273 LCTRQLRAA 281 >UniRef50_B1HME0 Putative uncharacterized protein n=2 Tax=Bacillaceae RepID=B1HME0_LYSSC Length = 238 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 45/185 (24%), Positives = 71/185 (38%), Gaps = 33/185 (17%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P +L E+ L LF +++TG RIGE L E D V+ + Sbjct: 63 PKFLSEVEIEHLREACQTTMEKALFEFMYSTGCRIGEVVKLNREDIDFQSNSVIVQGKGD 122 Query: 102 KVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR--REPLWAVTD---------E 150 K R ++ + + W+ R REP +TD + Sbjct: 123 KER-----------------EVYFNTRCSIWLKRYLDEREDREPCLFITDRRPKRRMSID 165 Query: 151 TMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSME 210 +R +K+ RA + PH RHSY HM+ + P VIQ+L GH + + Sbjct: 166 NLRYIIKRISNRAS-----IKKSIHPHQLRHSYATHMINNGAPIDVIQSLLGHEKSETTK 220 Query: 211 VYTRV 215 +Y ++ Sbjct: 221 IYAQL 225 >UniRef50_Q12Q52 Phage integrase n=12 Tax=Gammaproteobacteria RepID=Q12Q52_SHEDO Length = 296 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 14/176 (7%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P L EVS ++ R+ + F TL++ G+R+GEA ++ + D+D +++ Sbjct: 106 PDILTPAEVSMVISLTHKLRYQVCFLTLYSMGLRLGEA--VSLQIGDIDS-----QLMQV 158 Query: 102 KVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETM--RNWLKQA 159 +R +G KD RL+PL + W PR P ++ R +++A Sbjct: 159 HIRDAKG--GKD--RLIPLPQRTLQALRYYWQTHRHPRYLFPGKDGKPNSLMDRGGIQKA 214 Query: 160 VRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 +++ ++ H ++PH RHSY H+L + +Q L GH + YTR+ Sbjct: 215 MKKVISE-CHIHKSISPHNLRHSYATHLLEQGLDLRSVQQLLGHNSLNTTARYTRL 269 >UniRef50_Q3JF68 Phage integrase n=4 Tax=Chromatiaceae RepID=Q3JF68_NITOC Length = 310 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 49/175 (28%), Positives = 77/175 (44%), Gaps = 28/175 (16%) Query: 60 QRHHMLFATLWNTGMRIGEARMLTPESFD-LDGVRPFVRILSEKVRARRGRPPKDEVRLV 118 +R+ +LF + N+G+RI EA + ++G+ VRI+ + R R LV Sbjct: 153 RRYDVLFGLILNSGLRISEALAVKVRDVRVMNGIAKSVRIIGKGNRER----------LV 202 Query: 119 PLTDIS--------YVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHF 170 PL + R+ + ++ P + P R +L++ + RA D Sbjct: 203 PLPEAFGQVFGAWLQGREGDDFVFAKAPGGKPP----GPHAARAYLRRLIERAGIDK--- 255 Query: 171 SIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLA 225 PVTPH RH+Y +L IQAL GH D + ++YT V MA +A Sbjct: 256 --PVTPHKLRHTYATRLLESGAELVDIQALLGHVDLSTTQIYTHVSEERMAGVVA 308 >UniRef50_C0VHG1 Site-specific tyrosine recombinase n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VHG1_9GAMM Length = 306 Score = 54.7 bits (130), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 85/198 (42%), Gaps = 48/198 (24%) Query: 43 AYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEK 102 A + AP++S L R +F L+ G+R+ E L E +L + FVRI Sbjct: 130 ALINAPDISTTL----GLRDRAMFEVLYACGLRVSELLNLRLELINLK--QGFVRI---- 179 Query: 103 VRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR------------------RREPL 144 G+ K+ RLVPL + +E ++ +RP+ R+ Sbjct: 180 ----TGKGNKE--RLVPLGQYA-CDWIEKYLAESRPQLYKSNTDYLFLTQHGGIMSRQNF 232 Query: 145 WAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHR 204 W ++ + QA +AE ++PHT RH++ H+L H +V+Q L GH Sbjct: 233 WYA----IKRYALQANIQAE---------LSPHTLRHAFATHLLNHGADLRVVQMLLGHS 279 Query: 205 DPRSMEVYTRVFALDMAA 222 D + ++YT V M A Sbjct: 280 DLSTTQIYTHVAQHRMQA 297 >UniRef50_Q2NUY3 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NUY3_SODGM Length = 239 Score = 54.3 bits (129), Expect = 3e-06, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 40/68 (58%), Gaps = 1/68 (1%) Query: 24 DFATALSLRRMATSTGAT-PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARML 82 D+ +A++LR +A + G P YLLAPEV+ LL + D R + LWNTG R+ E L Sbjct: 73 DYESAVALRNLAAAYGTDMPRYLLAPEVAVLLSKVTDLRKRLFIDALWNTGGRLNEILPL 132 Query: 83 TPESFDLD 90 T F LD Sbjct: 133 TRGDFVLD 140 >UniRef50_UPI0001C41B06 tyrosine recombinase XerC n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41B06 Length = 326 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 50/196 (25%), Positives = 80/196 (40%), Gaps = 37/196 (18%) Query: 38 TGATPAYLLAPEVSALL--FYMPDQ----------RHHMLFATLWNTGMRIGEARMLTPE 85 T + P L EV +L+ + D+ R ++ L++TG+RI E L + Sbjct: 136 TKSLPKSLTEKEVKSLIDAVQITDEDSELKKKAKMRDKVILEFLYSTGLRISELVKLQKK 195 Query: 86 SFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLW 145 D D E+ RG+ KD + L R + I T+ ++ E L+ Sbjct: 196 DIDFD----------ERTIRVRGKGEKDRIVLFDEN----TRDLIDNYIETQNQKSEYLF 241 Query: 146 AVTDETMRNWLK------QAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQA 199 +N K Q + + A+ VTPH RHS+ H+L + +VIQ Sbjct: 242 I-----NKNGRKLTPRYVQMMIKEYAEKAGIKKKVTPHVLRHSFATHLLKNGVDIRVIQQ 296 Query: 200 LAGHRDPRSMEVYTRV 215 L GH + ++YT V Sbjct: 297 LLGHSSLSTTQIYTNV 312 >UniRef50_B6WSE8 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WSE8_9DELT Length = 327 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 48/159 (30%), Positives = 73/159 (45%), Gaps = 18/159 (11%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R H L L+ +G+RI EA L LD VR+ + R R + PL Sbjct: 164 RDHALAELLYGSGLRISEALGLDVTDLRLD--ESVVRVFGKGARER----------MSPL 211 Query: 121 TDISYVRQMESWM---ITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSI-PVTP 176 +D S V + +W+ T P + L+ V R ++A+RR E + + PV+P Sbjct: 212 SDTS-VTALRAWLEQRGTLAPEGEKALF-VGARGGRLDRREAMRRIERLCRNAGVEPVSP 269 Query: 177 HTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 H RHS+ H+L + +Q L GH+ + + YTRV Sbjct: 270 HALRHSFATHLLDAGADLRSVQELLGHQRLTTTQRYTRV 308 >UniRef50_Q7ZAJ8 Tyrosine recombinase xerD n=13 Tax=Gammaproteobacteria RepID=XERD_SHEON Length = 300 Score = 54.3 bits (129), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 81/168 (48%), Gaps = 33/168 (19%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R + L+ TG+R+ E LT E L + VRI+ G+ K+ RLVP+ Sbjct: 137 RDKAMLELLYATGLRVSELVGLTMEQMSLR--QGLVRII--------GKGGKE--RLVPM 184 Query: 121 TDISYVRQMESWMITTR-------------PRRREPLWAVTDETMRNWLKQAVRRAEADG 167 +++ + ++E ++ + R P +R + +T +T + +K RA G Sbjct: 185 GEMA-ITEVEHYLTSARHELLGHIQSDVVFPSKRSQM--MTRQTFWHRIKLYASRA---G 238 Query: 168 VHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 + ++PHT RH++ H+L H +V+Q L GH D + ++YT V Sbjct: 239 I--ETELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHV 284 >UniRef50_B2KBN7 Integrase family protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBN7_ELUMP Length = 295 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 49/188 (26%), Positives = 91/188 (48%), Gaps = 34/188 (18%) Query: 42 PAYLLAPEVSALLFYMPDQ-----RHHMLFATLWNTGMRIGEARMLTPESFDLD-GVRPF 95 P +L E L+ +Q R LF ++++G+R E L+ + DL+ GV Sbjct: 110 PKFLTQEETDRLIDTAANQGKLPARDKALFELIYSSGLRRSEVTGLSIKDIDLNLGV--- 166 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP--RRREPLWA------V 147 VR++ G+ K+ RLVP+TD++ + ++ ++ +TR +PL+ + Sbjct: 167 VRVM--------GKGSKE--RLVPITDLA-IEALKEYL-STRGVYNSGDPLFLNRLGGRL 214 Query: 148 TDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPR 207 T + + +K +A + + VT H+ RHS+ HML + + +Q + GH+ Sbjct: 215 TGDGLAYLVKNITIKA-----NLARKVTAHSLRHSFATHMLNNGCDLRSLQEMLGHKSLS 269 Query: 208 SMEVYTRV 215 + +VYT V Sbjct: 270 ATQVYTHV 277 >UniRef50_B2UNK4 Integrase family protein n=2 Tax=Verrucomicrobiaceae RepID=B2UNK4_AKKM8 Length = 295 Score = 53.9 bits (128), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 35/165 (21%) Query: 65 LFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDIS 124 L ++ GMR+ E ESFD D FVR+L + ++ RLVP+ S Sbjct: 136 LLEMIYACGMRVSEIINCKLESFDKD--EAFVRVLGKG----------NKTRLVPVGR-S 182 Query: 125 YVRQMESWMITTRPR--------------RREPLWAVTDETMRNWLKQAVRRAEADGVHF 170 + ++ ++ RP+ R PL T E +R L++ RA A G+ Sbjct: 183 ALDALQMYLEKGRPKLVRTGTKSHIFLTVRGRPL---TRERIRQILRE---RARAAGL-- 234 Query: 171 SIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 V PH RHS+ H+L + ++IQ + GH D + ++YT + Sbjct: 235 EQHVFPHILRHSFATHLLENGADLRIIQEMLGHADISTTQIYTHL 279 >UniRef50_B8HGE6 Tyrosine recombinase XerD n=37 Tax=Actinobacteridae RepID=B8HGE6_ARTCA Length = 362 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 48/169 (28%), Positives = 74/169 (43%), Gaps = 23/169 (13%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVR-----PFVRILSEKVRARRGRPPKDEV 115 R L L++TG RI EA L + L G VR+ G+ K+ Sbjct: 189 RDRALLEFLYSTGARISEAVGLDVDDISLAGDDTEQGPAIVRLF--------GKGSKE-- 238 Query: 116 RLVPLTDISYVRQMESWMITTRP-----RRREPLWAVTDETMRNWLKQA--VRRAEADGV 168 RLVPL R +E++++ RP + P + R + A + + A+ Sbjct: 239 RLVPLGSYG-ARALEAYLVRGRPLLAAKGKGTPALFLNARGGRISRQSAWTILKVAAEKA 297 Query: 169 HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFA 217 + + V+PHT RHS+ H+L +V+Q L GH + +VYT V A Sbjct: 298 NITRDVSPHTLRHSFATHLLEGGADVRVVQELLGHASVTTTQVYTLVTA 346 >UniRef50_Q71Y59 Tyrosine recombinase xerD n=19 Tax=Firmicutes RepID=XERD_LISMF Length = 297 Score = 53.9 bits (128), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/168 (25%), Positives = 76/168 (45%), Gaps = 26/168 (15%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R + L+ TG+R+ E +++ + DL F++ + + D+ R++PL Sbjct: 133 RDQAMMEILYATGLRVTE--LVSLKMDDLHLHMGFIQTIGKG----------DKERIIPL 180 Query: 121 TDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRR----------AEADGVHF 170 + +E ++ RP+ R P + D N Q + R A+ G+ Sbjct: 181 GKTA-TTVLEKYLEEARPKLRRPKYR-NDFVFLNHHGQGLTRQGFWKILKGIAKESGI-- 236 Query: 171 SIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFAL 218 P+TPHT RHS+ H+L + + +Q L GH D + ++YT V L Sbjct: 237 EKPITPHTLRHSFATHLLENGADLRSVQELLGHADISTTQIYTHVTKL 284 >UniRef50_UPI0000D54C0A tyrosine recombinase n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D54C0A Length = 213 Score = 53.5 bits (127), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 46/185 (24%), Positives = 84/185 (45%), Gaps = 29/185 (15%) Query: 42 PAYLLAPEVSALLFYMP----DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVR 97 P L +V LL + P D R L+++G+R+ EA + SF+ + FV+ Sbjct: 22 PKALTPEDVEKLLSFQPKSKSDFRDKAFLELLYSSGLRVSEAVGVNLSSFESE--LSFVK 79 Query: 98 ILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLK 157 +L G+ K+ R++P+ + +E W++ RE + T+ N Sbjct: 80 VL--------GKGKKE--RMLPVGKFAK-EAIEKWLV-----EREHIAKDTNALFINKYG 123 Query: 158 Q--AVRRAEADGVHFSI-----PVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSME 210 + ++R + + SI PV+PH RHS+ H+L + IQ + GH + + Sbjct: 124 KRISIRAMQERIYNISIAQGLSPVSPHMLRHSFATHILESSGDLRSIQEMLGHSSLSTTQ 183 Query: 211 VYTRV 215 +YT++ Sbjct: 184 IYTKL 188 >UniRef50_C7LWB1 Integrase family protein n=2 Tax=Desulfovibrionales RepID=C7LWB1_DESBD Length = 312 Score = 53.1 bits (126), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 74/170 (43%), Gaps = 27/170 (15%) Query: 65 LFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD-- 122 L L+ +G+R+ EA L DLD + VR+L +GR + RLVPLT Sbjct: 145 LLEVLYGSGLRVSEALGLDFAHVDLD--QKLVRVLG------KGR----KERLVPLTGPA 192 Query: 123 ----ISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIP--VTP 176 Y+ Q ++ P RE + R KQA R + V P ++P Sbjct: 193 AERLARYIEQRGAFA----PAAREQAVFLGKRGGRLSRKQADRIVKEMAVRSGAPCSISP 248 Query: 177 HTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAV 226 HT RHS+ HML + +Q L GH + + YT LD+A + V Sbjct: 249 HTLRHSFASHMLQAGADLRSVQELLGHSRISTTQRYTH---LDLAQVMRV 295 >UniRef50_C3RQN8 Site-specific tyrosine recombinase xerD n=3 Tax=Bacteria RepID=C3RQN8_9MOLU Length = 302 Score = 53.1 bits (126), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/166 (25%), Positives = 79/166 (47%), Gaps = 30/166 (18%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R+ + L+ TGMRI E LT + DL+ F++++ G+ K+ R++P+ Sbjct: 134 RNRCMVELLYATGMRISELLNLTLK--DLNIKMGFIKVI--------GKGNKE--RMIPI 181 Query: 121 TDISYVRQ-MESWMITTRPRRREPLWAVTDETMRNWLKQAVR--RAE--------ADGVH 169 SYV + +E ++ R + + ++++ + K R R E + Sbjct: 182 G--SYVGEILEQYINDYRAE-----FNIKNDSLLFFNKHGQRLSREEFYSILQTIVNSTS 234 Query: 170 FSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 + V+PHTFRH++ H+L + + IQ L GH D + +YT + Sbjct: 235 ITKKVSPHTFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHI 280 >UniRef50_C7WJB9 Integrase n=3 Tax=Enterococcus faecalis RepID=C7WJB9_ENTFA Length = 372 Score = 52.8 bits (125), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 50/183 (27%), Positives = 83/183 (45%), Gaps = 24/183 (13%) Query: 45 LLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVR--ILSEK 102 LL+ E +LLF+ M F L+ TG+R+GEA L E D D ++ +L + Sbjct: 187 LLSDESDSLLFFKK-----MFFRFLFMTGLRLGEALALNWEDVDFDSKVVYINKTMLVKN 241 Query: 103 VRARRGRPPKDE--VRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETM-----RNW 155 R R PK + +R V L D + +R E W P + ++++ T+ W Sbjct: 242 KREFRTTTPKTKSSIRTVSLDDET-LRLFEIWREQQSPLKINLIFSIDGGTLAKSTTHGW 300 Query: 156 LKQAVRRAEADGVHFSIPVTP-HTFRHSYIMHMLYHRQPRKVIQALAGH-RDPRSMEVYT 213 LK+ A+ +PV H RHS+ ++ ++ VI+ GH R ++E Y Sbjct: 301 LKKLCDLAD-------VPVIKIHALRHSHASMLIALKEDSLVIKERLGHSRITTTLEKYG 353 Query: 214 RVF 216 ++ Sbjct: 354 HLY 356 >UniRef50_D0U650 Site-specific recombinase XerD n=1 Tax=uncultured actinobacterium RepID=D0U650_9ACTN Length = 308 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 17/164 (10%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPF-VRILSEKVRARRGRPPKDEVRLVP 119 R + L+++G R+ E ++ DL + ++ + K+R G+ K+ R+VP Sbjct: 136 RDQAMLELLYSSGARVSE--LIGINLNDLSSIDTSDGKVTTLKLR---GKGAKE--RIVP 188 Query: 120 LTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEA--------DGVHFS 171 L + + +E++++ RP VT N + R A D + Sbjct: 189 LGSFA-TKAVENYLVRVRPDLASKSSKVTSALFLNSRGSRISRQSAWQMVLDAADAAGIT 247 Query: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 V+PH FRHSY H+L +V+Q L GH + ++YT + Sbjct: 248 EHVSPHVFRHSYATHLLNGGADIRVVQELLGHASVTTTQIYTLI 291 >UniRef50_C4L6H6 Integrase family protein n=1 Tax=Exiguobacterium sp. AT1b RepID=C4L6H6_EXISA Length = 287 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 72/154 (46%), Gaps = 18/154 (11%) Query: 66 FATL-WNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDIS 124 F TL +TGMRI E R LT ++ DL+ ++ ++ G+P K VPL D++ Sbjct: 133 FLTLQLHTGMRINEVRQLTLDAIDLNARLLYIH------ESKTGKPRK-----VPLNDVT 181 Query: 125 YVRQMESWMITTRPRRREPL---WAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRH 181 + M +++ R P A D + + + ++RA D + S VT HT RH Sbjct: 182 HA-MMTTYLEEERRCIDSPYVFPSARGDLICKTTINRHLKRAAEDVLGTS--VTSHTLRH 238 Query: 182 SYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 ++ H+ + L GH +P++ Y RV Sbjct: 239 AFTSHLYDMGVKETTLSELLGHSEPKTTRRYIRV 272 >UniRef50_C2KPQ6 Tyrosine recombinase n=2 Tax=Mobiluncus mulieris RepID=C2KPQ6_9ACTO Length = 319 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 45/164 (27%), Positives = 68/164 (41%), Gaps = 22/164 (13%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRAR---RGRPPKDE--- 114 R L L+ +G RI EA L + D + VR+ + + R G Sbjct: 150 RDRALLEFLYASGARISEAMNLVLDDIDFETEPALVRLFGKGRKERISMLGHQACQALQA 209 Query: 115 --VRLVP-LTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFS 171 VR+ P L + R +P R+ WA+ ++ A +RA+ D Sbjct: 210 YLVRVRPTLAEKGQSRGRVFLNTYGKPMSRQTAWAI--------IQAAAKRAQIDR---- 257 Query: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 PV PHT RH + H+L +V+Q L GH + E+YT+V Sbjct: 258 -PVHPHTLRHCFATHLLQGGADIRVVQELLGHASVTTTEIYTKV 300 >UniRef50_A8RBU2 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RBU2_9FIRM Length = 302 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/190 (22%), Positives = 77/190 (40%), Gaps = 35/190 (18%) Query: 42 PAYLLAPEVSALL-----FYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV 96 P +L E+ L M R +F ++ G+R+ EA L D Sbjct: 114 PEFLFYDEIEIFLESFDLNSMQGLRDRTMFELMYACGLRVSEAVSLRTRDVDF------- 166 Query: 97 RILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWL 156 ++ + G+ K+ RLVP D++ ++ + + +WA +DET ++ Sbjct: 167 ---ADNILHIHGKGDKE--RLVPFYDLA------KELLVSYIKDVRDVWATSDETAL-FV 214 Query: 157 KQAVRRAEADGVHF-----------SIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRD 205 Q ++ GV + + V PH FRHS+ H+L + + +Q L GH Sbjct: 215 NQRGKKLTTRGVQYLMNKAVEKCDLHVHVHPHMFRHSFATHLLDNGADLRYVQELLGHSS 274 Query: 206 PRSMEVYTRV 215 + ++Y V Sbjct: 275 LSTTQIYVHV 284 >UniRef50_B7CAN0 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAN0_9FIRM Length = 300 Score = 52.8 bits (125), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/195 (22%), Positives = 92/195 (47%), Gaps = 36/195 (18%) Query: 37 STGATPAYLLAPEVSALLFYMPD----QRHHMLFATLWNTGMRIGEARMLTPESFDLDGV 92 S+ P YL EV + D Q + + L++ G+R+ E L L+ V Sbjct: 104 SSKHLPVYLSVDEVKKVFSSFQDNEIDQYNKTILVVLYSCGLRVSELCDLK-----LNDV 158 Query: 93 RPFVRILSEKVRARRGRPPKDEVRLVPLTDISY-VRQMESWMITTRPRRREPLWAVTDET 151 L+E++ +G+ K+ R++P++ SY V QM+ ++ + R +W V + + Sbjct: 159 H-----LTEQILKVKGKGDKE--RIIPIS--SYCVSQMKYYLDSIRF-----VWDVKNVS 204 Query: 152 M-----------RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQAL 200 R ++ +++ + + ++ + ++ H+FRHS+ H+L +++Q L Sbjct: 205 YFFVNRLGHICTRQYVHLMIKQ-KVNELNLNPKISAHSFRHSFATHLLDGDADLRIVQEL 263 Query: 201 AGHRDPRSMEVYTRV 215 GH + + ++YT + Sbjct: 264 LGHSNISTTQIYTHI 278 >UniRef50_UPI0001C4241D integrase/recombinase n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4241D Length = 321 Score = 52.4 bits (124), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 34/191 (17%) Query: 42 PAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV 96 P++L E+ L D+R + L+ TGMR+GE L DL FV Sbjct: 132 PSFLYEEEMDELFKAFEGNTPLDKRDRAILELLYATGMRVGECSQLDVADIDLRIGTAFV 191 Query: 97 RILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMITTRPRRREPLWA---- 146 + G+ K+ R VP+ + Y+ ++ + L+ Sbjct: 192 K----------GKGNKE--RYVPIGSFACDALHEYIEDARVNLLKKGNSETKRLFLNYRG 239 Query: 147 --VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHR 204 +TD ++R L + V A + PH RHS+ H+L + +V+Q L GH Sbjct: 240 GPLTDRSIRRMLAKRVEEASMQK-----HIRPHDLRHSFATHLLNNGADLRVVQELLGHE 294 Query: 205 DPRSMEVYTRV 215 + +VYT V Sbjct: 295 HLSTTQVYTHV 305 >UniRef50_B8I4A1 Integrase family protein n=1 Tax=Clostridium cellulolyticum H10 RepID=B8I4A1_CLOCE Length = 385 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 50/203 (24%), Positives = 90/203 (44%), Gaps = 20/203 (9%) Query: 23 VDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARML 82 D T+ +R+ + TG L EV + R+ ++F L+ TGMRIGE +L Sbjct: 164 TDGETSQVVRKYSNRTGKR---LFTDEVDIFYKGLTGTRNKLIFDILYETGMRIGE--LL 218 Query: 83 TPESFDLDGVRP-----FVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR 137 + + D V P ++ I+ ++ + R K R + +T + + ++E ++ R Sbjct: 219 SLKVNDYSEVDPWNLFGYIYIIYDEENDDQNRQQKTGSRTL-VTTMKLLGRIEEYITEIR 277 Query: 138 PRRREPLWAVTDETMRNWLKQAVRRAEADGVHFS-------IPVTPHTFRHSYIMHMLYH 190 P +E + E+ + Q + R+ + V FS I TPH RH+++ + Sbjct: 278 PYIKEQEYIFVAESGKTK-GQPLSRSLIEKV-FSECTEKTGIKCTPHMLRHTHLTELSEF 335 Query: 191 RQPRKVIQALAGHRDPRSMEVYT 213 ++ AGHR + E YT Sbjct: 336 GFDEIFLKGRAGHRSIHTTEKYT 358 >UniRef50_C9RQE0 Integrase family protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQE0_FIBSS Length = 297 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 31/186 (16%) Query: 42 PAYLLAPEVSALLFYMPDQRHHM----LFATLWNTGMRIGEARMLTPESFDLDG--VRPF 95 P YL E+ ++ + ++ + L +++ G+RI EA + DL+ + P Sbjct: 111 PQYLTREEIDSVFESAANGKNPLRDTALIELMYSGGLRISEALGIKLSQIDLENEWLMPI 170 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNW 155 G+ K RLVPL + + +W+ RP TD + N Sbjct: 171 ------------GKGNKQ--RLVPLGSKA-KENLRAWIEEGRPLTH----PTTDNIILNA 211 Query: 156 LKQAVRRAEA------DGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSM 209 + + R A +H S V+PHTFRHS+ H L +V+Q L GH D + Sbjct: 212 HGKPMSRMGAWKIVQLHTMHLSKQVSPHTFRHSFATHCLEAGMDLRVLQELLGHADISTT 271 Query: 210 EVYTRV 215 ++YT V Sbjct: 272 QIYTHV 277 >UniRef50_Q3A4T3 Site-specific recombinase XerD n=24 Tax=root RepID=Q3A4T3_PELCD Length = 333 Score = 52.0 bits (123), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 29/77 (37%), Positives = 44/77 (57%), Gaps = 5/77 (6%) Query: 147 VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDP 206 V + ++ +K AV RA G+H + HTFRHS+ H+L + +V+Q L GH D Sbjct: 252 VLESGLQKAVKVAVNRA---GIHKRVGC--HTFRHSFATHLLENGVNIRVVQELMGHADV 306 Query: 207 RSMEVYTRVFALDMAAT 223 ++ E+YT V A D+ A Sbjct: 307 KTTEIYTHVMAKDINAV 323 >UniRef50_C0QHZ4 Phage-specific recombinase/integrase XerD n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QHZ4_DESAH Length = 337 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 51/185 (27%), Positives = 79/185 (42%), Gaps = 26/185 (14%) Query: 46 LAPEVSALLFYMPDQ------RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRIL 99 L PE LL PD+ R L + L+++G R+ E L + LD P V IL Sbjct: 126 LTPETMKLLLSQPDKMTAKGRRDITLLSVLYDSGCRVQELIDLKIRNVILDN--PAVLIL 183 Query: 100 SEKVRARRGRPPKDEVRLVPLTDISYV---RQMESWMITTRPRRREPLW------AVTDE 150 + K +++R VPL + V ++ + +R PL+ +T E Sbjct: 184 TGK---------GNKIRRVPLMRNTLVLLQNYLQEHSLDKDWKRDYPLFINKQRNKLTKE 234 Query: 151 TMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSME 210 + + Q V A+ VTPH FRHS +H+L I+ GH+D R+ E Sbjct: 235 GIAYIISQYVGPAKRMSASMPKKVTPHMFRHSKAVHLLQADVNLIYIRDFLGHQDVRTTE 294 Query: 211 VYTRV 215 +Y + Sbjct: 295 IYAKC 299 >UniRef50_C0GE84 Integrase family protein n=2 Tax=Firmicutes RepID=C0GE84_9FIRM Length = 286 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 74/169 (43%), Gaps = 10/169 (5%) Query: 44 YLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKV 103 YL EV+ L + + ++ L NTG+RI E LT + DLD + + ++S K Sbjct: 113 YLSQQEVAELADTITNDLVRLIVIFLANTGLRISECIKLTMDDVDLD--KGIIHVISGKG 170 Query: 104 RARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRA 163 R P + +L+PL I Y + + +++ + N L+QAV+ Sbjct: 171 NKDRNVPINN--KLLPLL-IDYKDNWRDAYNSNFFFATKKTGTISNTYVNNTLRQAVQ-- 225 Query: 164 EADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVY 212 + + V+ H RHS+ ++ + IQ L GH D + VY Sbjct: 226 ---SLGWKKNVSCHILRHSFATSLVKQKVGLVEIQKLLGHSDLKITSVY 271 >UniRef50_D1KE10 Site-specific recombinase XerC n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KE10_9GAMM Length = 292 Score = 51.6 bits (122), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 49/204 (24%), Positives = 86/204 (42%), Gaps = 22/204 (10%) Query: 23 VDFATALSLRRMATSTGATPAY-----LLAPEVSALLFYMPDQRHHMLFATLWNTGMRIG 77 V+ A L ++A S T Y +L P+ SA + R + L++ G+R+ Sbjct: 92 VNCAQGLQSPKVAKSLPKTLDYERLVQMLTPKSSAF----SELRDAAMVEVLYSCGLRVS 147 Query: 78 EARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR 137 E L E D+D + F+R++ G+ K VR PL + S + + ++ T Sbjct: 148 ELVGLDIE--DVDASQGFLRVM--------GKGSK--VRYTPLGE-SAQKSINRYLQKTS 194 Query: 138 PRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVI 197 + E + Q + + A V + V PH RH+ H L + + Sbjct: 195 HTNKALFVNNRQERISTRTVQNIIKNRALSVGIKVNVHPHMLRHAAATHFLQSSHDLRSV 254 Query: 198 QALAGHRDPRSMEVYTRVFALDMA 221 Q GH+ +S +VYT + L+++ Sbjct: 255 QEFLGHKSIKSTQVYTHLDFLELS 278 >UniRef50_Q0AFS1 Tyrosine recombinase XerC subunit n=6 Tax=Betaproteobacteria RepID=Q0AFS1_NITEC Length = 321 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/200 (25%), Positives = 85/200 (42%), Gaps = 37/200 (18%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPDQ------RHHMLFATLWNTGMRIGEARMLTPES 86 R+ S P L E + LL + P R +F +++G+R+ E L P Sbjct: 119 RVPKSPHKLPHALSPDEAAQLLTFNPSSNDMLATRDLAIFELFYSSGLRLTELTQLQPTD 178 Query: 87 FDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWA 146 D G VR+ + ++ R+VP+ +++ +R +++W+ P R W Sbjct: 179 IDFTG--GTVRVTGKG----------NKTRIVPVGELA-LRALQAWL----PLRSA--WL 219 Query: 147 VTDETMRNWLKQAVRRAEADGVHFSIP-----------VTPHTFRHSYIMHMLYHRQPRK 195 + ET +L Q RR + + + V PHT RHS+ H+L + Sbjct: 220 IPGETAL-FLSQRGRRIHPRTIAYRLHQRAQLQNLDSRVHPHTLRHSFASHLLQSSGDLR 278 Query: 196 VIQALAGHRDPRSMEVYTRV 215 +Q + GH RS +VYT + Sbjct: 279 AVQEMLGHSSIRSTQVYTHL 298 >UniRef50_C0QVM8 Site-specific recombinase XerD n=3 Tax=Brachyspira RepID=C0QVM8_BRAHW Length = 297 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 43/199 (21%), Positives = 88/199 (44%), Gaps = 32/199 (16%) Query: 42 PAYLLAPEVSALLFYMPDQ-----RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV 96 P L EV LL ++ R +F ++++G+R+ E L + +G ++ Sbjct: 101 PESLTDTEVDDLLAVHNEKTDKGLRDKAIFELMYSSGLRVSEICSLKIDDIFFEG--KYL 158 Query: 97 RILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMITTRPRRREPLWAVTDE 150 +I G+ ++ R+VP+ D + Y++ M+ + L D+ Sbjct: 159 KIC--------GKGKRE--RIVPINDRALDILQRYIQTSRVIMVKGKKTSELFLNFRGDK 208 Query: 151 TMR----NWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDP 206 R +K+A+++++ + + PHT RHS+ H++ H + +Q + GH D Sbjct: 209 ISRVGIWKIVKEAMKKSKIEK-----NIYPHTLRHSFATHLIQHGADLRAVQRMLGHSDI 263 Query: 207 RSMEVYTRVFALDMAATLA 225 + E+YT V + + +A Sbjct: 264 TTTEIYTHVDSAHLKKQIA 282 >UniRef50_C8WWD9 Integrase family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWD9_ALIAD Length = 307 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 82/181 (45%), Gaps = 24/181 (13%) Query: 42 PAYLLAPEVSALLFYMPDQ-----RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV 96 P YL EV+AL+ ++ R L L+ TG+R+ E L DL F Sbjct: 110 PRYLHEEEVAALIDHVGGDDFVALRDRALLEFLYATGVRVSECVHLDIGDLDLSA--GFA 167 Query: 97 RILSEKVRARR---GRPPKDEVR-LVPLTDISYVRQMESWMITTRPRRREPLWAVTDETM 152 R+L + R R GR D +R +PL D + + + I R R +TD ++ Sbjct: 168 RVLGKGGRERYVMVGRRAVDALRRYLPLRD--RMARCSAVFINRRGGR------LTDRSV 219 Query: 153 RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVY 212 R L++ ++ E G+ SI V H RHS+ HML + +Q L GH S ++Y Sbjct: 220 RRVLERRIQ--EVPGLR-SIHV--HGLRHSFATHMLNGGADLRSVQELLGHASLSSTQIY 274 Query: 213 T 213 T Sbjct: 275 T 275 >UniRef50_A1VDD4 Tyrosine recombinase XerD subunit n=12 Tax=Desulfovibrionales RepID=A1VDD4_DESVV Length = 321 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 46/168 (27%), Positives = 72/168 (42%), Gaps = 31/168 (18%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R + ++ G+R+ E L P D D VR+ G+ K+ R+VP+ Sbjct: 154 RDRTMLELMYAAGLRVSELCALRP--LDFDAQAGVVRVF--------GKGAKE--RIVPV 201 Query: 121 TDISYVRQMESWMITTRPRRREPLWAVTDETM------RNWLKQAV-----RRAEADGVH 169 +S ++T R P ++ + M + +QAV R G+H Sbjct: 202 HHVSCA------LVTAYLRDWRPAFSPVEPAMFLNRSGKGLSRQAVWKVVKRHVAEAGIH 255 Query: 170 FSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFA 217 I +PHTFRHS+ H+L + +Q L GH D + E+YT V A Sbjct: 256 KDI--SPHTFRHSFATHLLEGGADLRSVQLLLGHADISATEIYTHVQA 301 >UniRef50_C5TJ38 Tyrosine recombinase XerD n=5 Tax=Neisseriaceae RepID=C5TJ38_NEIFL Length = 293 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 49/191 (25%), Positives = 84/191 (43%), Gaps = 37/191 (19%) Query: 42 PAYLLAPEVSALLFYMPD------QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 P + ++ ALL PD R L ++ TG+R+ EA LT DL R Sbjct: 107 PTLITEAQIDALLA-APDVETSHGLRDKALLEVMYATGLRVTEAVKLTLSDIDLH--RGS 163 Query: 96 VRILSEKVRARRGRPPKDEVRLVPL-TDISYVRQMESWMITTRPRRREPLWAVTDETMRN 154 +R + + D++RLVPL + +Y +E + +RP + + DE + Sbjct: 164 IRTIGKG----------DKLRLVPLGQEAAY--WVERYCNESRPLLLKN--KICDEVFVS 209 Query: 155 WLKQAVRR----------AEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHR 204 + + R AEA G+ ++PH RH++ H++ H + +Q + GH Sbjct: 210 QKRSGISRQLAWMIVKEYAEAAGI---ASLSPHGLRHAFATHLVNHGVDLRSVQMMLGHS 266 Query: 205 DPRSMEVYTRV 215 D + ++YT V Sbjct: 267 DINTTQIYTHV 277 >UniRef50_A5EXM2 Tyrosine recombinase XerD n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXM2_DICNV Length = 297 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 48/193 (24%), Positives = 82/193 (42%), Gaps = 38/193 (19%) Query: 37 STGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV 96 S A L AP+V +L R + L+ G+R+ E LT LD +V Sbjct: 113 SESDVEALLSAPDVQTIL----GLRDRAMLELLYACGLRVSELVGLTLHQIALD--VGYV 166 Query: 97 RILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWL 156 +IL + D+ RLVP +I++ ++ ++ RP+ + + M +++ Sbjct: 167 QILGKG----------DKERLVPFGEIAH-EWLQRYIQEARPQ-------LLGQKMSDYV 208 Query: 157 KQAVRRAEADGVHF--------------SIPVTPHTFRHSYIMHMLYHRQPRKVIQALAG 202 + R A F S ++PHT RH++ H+L H + IQ L G Sbjct: 209 FVSQRGAALSRQAFWYRLKVYVCAVGLDSNKISPHTLRHAFASHLLAHGADLRSIQMLLG 268 Query: 203 HRDPRSMEVYTRV 215 H D + ++YT + Sbjct: 269 HSDLSTTQIYTHI 281 >UniRef50_A3EW74 Putative phage integrase family protein n=2 Tax=Leptospirillum sp. Group II RepID=A3EW74_9BACT Length = 314 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 83/182 (45%), Gaps = 43/182 (23%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R + AT + +G+R+ E LT + +L+ E++R G+ K+ R+ L Sbjct: 132 RDRAILATFYASGLRVSELAELTLDRLNLN---------EEQIRVT-GKGQKE--RVAFL 179 Query: 121 TDISYVRQMESWMITTRP------------RR-----REPLWAVTDETMRNWLKQAVRRA 163 +S R ++ ++ RP RR R+ LW + ++ + +Q Sbjct: 180 DGLSCAR-LKLYLERVRPSTNTAEKTLFLTRRQTGFTRQGLWLL----IKGYARQC---- 230 Query: 164 EADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAAT 223 G+ S V+PHT RHS+ H+L H + IQ L GH D ++ E+YT V +A Sbjct: 231 ---GIDRS--VSPHTLRHSFATHLLSHGMDIRSIQILLGHSDIQTTEIYTHVDIRMLAED 285 Query: 224 LA 225 LA Sbjct: 286 LA 287 >UniRef50_C5CH36 Integrase family protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CH36_KOSOT Length = 305 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 55/214 (25%), Positives = 91/214 (42%), Gaps = 40/214 (18%) Query: 42 PAYLLAPEVSALLFYMPD----QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVR 97 P Y+ EV +L P+ +R+ + A ++ G+R+ E LT L+ P VR Sbjct: 114 PEYISYEEVQKILEAFPETHLGKRNRAIVALMYYCGLRVSEVCSLTLRDISLES-DPLVR 172 Query: 98 ILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR--------------RREP 143 + S G+ KD R+VPLT + VR + ++ R R R EP Sbjct: 173 VKS-------GKGDKD--RIVPLTPDA-VRIISDYL-KHRDRFPDANRHIKLFVGIRGEP 221 Query: 144 LWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 +T +++ L+ V++ D + PH FRHS H+L K++Q + GH Sbjct: 222 ---ITRKSVNKMLQNHVKKIFPDK-----HLHPHIFRHSCATHLLQRGASIKIVQEILGH 273 Query: 204 RDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAE 237 + + +Y + D AV +G A + Sbjct: 274 ANISTTSIYLHI--TDREKREAVRLLSNGEKAGK 305 >UniRef50_C4FQH3 Putative uncharacterized protein n=1 Tax=Veillonella dispar ATCC 17748 RepID=C4FQH3_9FIRM Length = 380 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 54/195 (27%), Positives = 87/195 (44%), Gaps = 26/195 (13%) Query: 38 TGATPAYLLAPEVSALLFYM--PDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 T A +L E+ L + +QR +LF TG+RIGE R L + D + + Sbjct: 176 TKAREKFLTKDELKTFLTALAKKNQRVALLFEFQALTGLRIGELRALRVK--DYNSKNEY 233 Query: 96 VRILSEKVRARRGRPPKDE--VRLVPLTDISYVRQMESWMITTRPRRREPLWA------- 146 + + + PPK+E VR V L R + S I R++ + Sbjct: 234 IDVNATLTVDGLRIPPKNEYSVRRVQLN--KRARHILSTFIQLNHSRKQIMQHYKNDDNY 291 Query: 147 --VTDETM---RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALA 201 VTD + ++L + ++ V F+ VT HTFRH++I + + P K I A Sbjct: 292 IFVTDGGVPYDSHYLNKLLK-----SVSFNKTVTTHTFRHTHISLLAEKQTPLKTIMARV 346 Query: 202 GHRDPR-SMEVYTRV 215 GH +P+ ++ +YT V Sbjct: 347 GHNEPKTTLSIYTHV 361 >UniRef50_B5YGX8 Tyrosine recombinase XerD n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGX8_THEYD Length = 294 Score = 51.2 bits (121), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 40/182 (21%), Positives = 87/182 (47%), Gaps = 21/182 (11%) Query: 42 PAYLLAPEVSALLFYMPDQRHHM----LFATLWNTGMRIGEARMLTPESFDLDGVRPFVR 97 P L EV LL M + ++++ + ++ +G+R+ E L + + F+R Sbjct: 109 PKALEIDEVKRLLSVMLESKYYLRDIAMLELMYASGLRVSELVRLKLSDINFEA--GFIR 166 Query: 98 ILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP---RRREPLWAVTDETMRN 154 + +G+ K+ R+VP+ S + +++++++ RP +++ + + + Sbjct: 167 V--------KGKGDKE--RVVPIAQRS-IDKIKNYLVKLRPVLLKKKASEYVFLNNRGQP 215 Query: 155 WLKQAV-RRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYT 213 +Q + +A G + VTPH RHS+ H+L + +Q + GH D + ++YT Sbjct: 216 MTRQRFWQNIKAIGRIAGVNVTPHMIRHSFATHLLEGGADLRSLQKMLGHSDISTTQIYT 275 Query: 214 RV 215 +V Sbjct: 276 KV 277 >UniRef50_B8IZE7 Integrase family protein n=5 Tax=Desulfovibrionales RepID=B8IZE7_DESDA Length = 373 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 73/157 (46%), Gaps = 29/157 (18%) Query: 69 LWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQ 128 L+ +G+RI EA S D+D V+ R+L +V + R RL PL+D S+ Sbjct: 217 LYGSGLRISEAL-----SLDVDDVQLSSRVL--RVMGKGSRE-----RLAPLSDTSFS-C 263 Query: 129 MESWMITTRPRRREPLWAVTDETM--------RNWLKQAVRRAE--ADGVHFSIPVTPHT 178 +++W+ PL A+ DE R ++A R E + V+PH+ Sbjct: 264 LKAWL------EERPLLALPDEAALFVGARGARLNRREAARIVERLCRRAGLTFTVSPHS 317 Query: 179 FRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 RHS+ H+L + +Q L GH+ + + YT+V Sbjct: 318 LRHSFATHLLEAGADMRSVQELLGHQRLTTTQRYTQV 354 >UniRef50_B0SBH2 Tyrosine site-specific recombinase XerC n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SBH2_LEPBA Length = 428 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 49/189 (25%), Positives = 84/189 (44%), Gaps = 30/189 (15%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P L A E A+ +P+ +H ML ++ G+R+ E L + DL+ R +RI Sbjct: 231 PEVLSAEETRAIFNSLPNIKHKMLLLISYSAGLRVSEVIHLKTKDIDLE--RNMIRIT-- 286 Query: 102 KVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRN--WLKQA 159 +G+ KD R L + S V +++ ++ + R L + ++N WL Sbjct: 287 -----QGKGKKD--RYTILAN-SLVFELQEYL---KIREYNLLLKYSYNEVKNIPWLFPG 335 Query: 160 -------VRRAEA------DGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDP 206 +R AE + VT H+ RH++ H+L ++IQ L GH Sbjct: 336 AGTKPLHIRTAETIFNQAAAKAKITKKVTFHSLRHAFATHLLELGTDLRMIQTLLGHSSV 395 Query: 207 RSMEVYTRV 215 R+ ++YT+V Sbjct: 396 RTTQIYTKV 404 >UniRef50_Q7UY32 Integrase n=3 Tax=Rhodopirellula baltica RepID=Q7UY32_RHOBA Length = 292 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 46/171 (26%), Positives = 78/171 (45%), Gaps = 28/171 (16%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R +L L+ TG+R+ E L FD D +++R + G+ KD R V L Sbjct: 11 RDKLLLTVLYATGLRVAEVARLQWSDFDFD---------RQQIRVQLGKGKKD--RYVML 59 Query: 121 TD--ISYVRQM------ESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEA-DGVHFS 171 D + +RQ+ ++ + RR V +++AV++A G+ + Sbjct: 60 ADDLLPLMRQLWRHTKGVGYLFPSEGRR------VDRHLSPRTIQRAVKQARILSGIGKA 113 Query: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAA 222 VTPH+FRHS+ H++ + IQ L GH + + +YT+V + A Sbjct: 114 --VTPHSFRHSFATHLIESGTDIRFIQKLLGHTNLETTSLYTKVARMKATA 162 >UniRef50_Q7UTA2 Integrase n=4 Tax=Rhodopirellula baltica RepID=Q7UTA2_RHOBA Length = 436 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 50/182 (27%), Positives = 75/182 (41%), Gaps = 22/182 (12%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P L +V L+ QR + F T+++ G+R+ EA L + D+D R +V + Sbjct: 239 PEVLTIEQVHELIGSATTQRMFVYFWTVYSLGLRLNEALHL--QVSDIDAERGWVHV--- 293 Query: 102 KVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR-------RREPLW--AVTDET- 151 RG+ KD +P T + +R W P R+ L V++ T Sbjct: 294 ----HRGKGAKDRYVPLPTTTVRLLRNY--WASHRHPSFLFPADGRKHDLAKDGVSEATT 347 Query: 152 -MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSME 210 M Q + + F V+ HT RHSY H+L KVIQ GH ++ Sbjct: 348 PMSETAVQGAMKQITKNLRFGKKVSIHTLRHSYATHLLEAGVGLKVIQKYLGHSSLQTTM 407 Query: 211 VY 212 VY Sbjct: 408 VY 409 >UniRef50_A0L875 Tyrosine recombinase XerD subunit n=2 Tax=Proteobacteria RepID=A0L875_MAGSM Length = 296 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 48/186 (25%), Positives = 81/186 (43%), Gaps = 25/186 (13%) Query: 37 STGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV 96 S T A L AP+ S L R + ++ TG+R+ E LT + D + FV Sbjct: 113 SEAETEALLYAPDTSTEL----GMRDAAMLELMYATGLRVSELVTLTLDGLDEEN--GFV 166 Query: 97 RILSEKVRARRGRPPKDEVRLVPLTD------ISYVRQMESWMITTRPRRREPLWAVTDE 150 R++ G+ K+ R+VP+ + I Y R ++ R + + Sbjct: 167 RVI--------GKGNKE--RIVPMGEAATEMVIRY-RHSARQVLLKGGRCNDLFLSNRGA 215 Query: 151 TM-RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSM 209 M R+ V+R + + P++PH RH++ H+L H + +Q + GH D + Sbjct: 216 AMTRHNFWHIVKRYAYE-ANIMKPLSPHGIRHAFATHLLNHGADLRAVQMMLGHADISTT 274 Query: 210 EVYTRV 215 E+YT V Sbjct: 275 EIYTHV 280 >UniRef50_Q2GEQ3 Tyrosine recombinase XerD n=2 Tax=Neorickettsia RepID=Q2GEQ3_NEOSM Length = 305 Score = 50.8 bits (120), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 45/185 (24%), Positives = 83/185 (44%), Gaps = 24/185 (12%) Query: 42 PAYLLAPEVSALLFYMPDQ-----RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV 96 P YL EV +LL ++ R + + L+++GMR+ E + + +RP + Sbjct: 109 PRYLTKEEVFSLLTFLEAGQPATLRLYAILEILYSSGMRVSELI-----NMKVSDIRPLL 163 Query: 97 R-----ILSEKVRARRGRP-PKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDE 150 I+ K R R P K ++++ L SY + W+ R+ P+ + + Sbjct: 164 NGQQHIIIVGKGRKERILPFSKKAIQVLKLYLTSY-QSNSPWLFPGAGRKDRPM---SRQ 219 Query: 151 TMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSME 210 + LK+ + + D ++PH RHS+ H+L + KV+Q L GH + + Sbjct: 220 RLGQLLKELALKCKIDPKR----ISPHVIRHSFATHLLDNGMDIKVVQDLLGHAQITTTQ 275 Query: 211 VYTRV 215 +YT + Sbjct: 276 IYTHI 280 >UniRef50_C7H3R2 Site-specific recombinase, phage integrase family n=3 Tax=Faecalibacterium prausnitzii RepID=C7H3R2_9FIRM Length = 342 Score = 50.4 bits (119), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 53/198 (26%), Positives = 83/198 (41%), Gaps = 22/198 (11%) Query: 29 LSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFD 88 L+ + AT T EV+ L+ +PD R + L TGMR+ E L P+ + Sbjct: 138 LAEKMRATGTAKRKEAFTTAEVAHLMKVLPDDRMGLSIRLLLGTGMRMQELLALEPQFIE 197 Query: 89 LDG----VRPFVRILSEKVRARRGRP-PKDEVRLVPL------TDISYVRQMESWMITTR 137 DG +R V+++ V G P KD +R +P+ I +R I Sbjct: 198 EDGSVIHIRQAVKVVKGTVSI--GSPKSKDSIRDIPVPLNVRPCAIK-LRDTTDQFIWES 254 Query: 138 PRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVI 197 P+ P R+ ++++ EA V +TPH+ RH+Y+ M + I Sbjct: 255 PKTGLP---CNPTHFRDVFRKSLE--EAGDVRL---LTPHSCRHTYVSQMQALGVDIQTI 306 Query: 198 QALAGHRDPRSMEVYTRV 215 Q++ GH D E Y V Sbjct: 307 QSIVGHADTEMTEHYLHV 324 >UniRef50_C9LJA5 Phage-related integrase n=4 Tax=Bacteroidales RepID=C9LJA5_9BACT Length = 341 Score = 50.4 bits (119), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 55/191 (28%), Positives = 87/191 (45%), Gaps = 22/191 (11%) Query: 37 STGATPAYLLAPEVSALLFYMPDQ-----RHHMLFATLWNTGMRIGEARMLTPESFDLDG 91 S + +YL + LL +P R L A L+++G R+ E LTP DL Sbjct: 117 SEKQSVSYLSVDGIKLLLSLIPVNTRNGLRDLALIALLYDSGARVQELIDLTP--MDLHL 174 Query: 92 VRPFVRILSEKVRARRGRPPKDE-VRLVPLTDISYVRQMESWMITTRPRRREPLWA---- 146 V+P+ L K R RR P +++ V L+ + ME+ + + + PL+A Sbjct: 175 VKPYYVSLFGKGRKRRLVPLQEQQVELLK-------KYMEAEGLLKQSLNQHPLFANNRG 227 Query: 147 --VTDETMRNWLKQAVRRAE-ADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 +T+ + L + VR A AD V+PH+ RHS MH+L I+ + GH Sbjct: 228 EKLTNAGVTFILMRYVRNAHVADPDLVPAKVSPHSLRHSKAMHLLQAGVNLVYIRDILGH 287 Query: 204 RDPRSMEVYTR 214 ++ E+Y R Sbjct: 288 VSIQTTEIYAR 298 >UniRef50_D1R4B2 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R4B2_9CHLA Length = 304 Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 82/185 (44%), Gaps = 32/185 (17%) Query: 45 LLAPEVSALLFYMPDQ------RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRI 98 +L E LL PD R +F L+ +G+R+ E LT S D +R + + Sbjct: 121 ILDIEEVDLLMNQPDNKTAKGVRDRAIFELLYGSGLRVSEVCTLTIYSIDDQYIRVYGKG 180 Query: 99 LSEKVRARRGRPPKDEVRLVPLTDISYVR------QMESWMITTRPRR--REPLWAVTDE 150 E++ P + + +S R + +S +T R + R +W Sbjct: 181 SKERIV-----PIGSQALMAVDQYLSLYRWQWDSEKEQSLFVTLRGKSMDRISIW----R 231 Query: 151 TMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSME 210 +++ + +QA G+ + ++PHT RHS+ H+L + +VIQ L GH + S + Sbjct: 232 SIKEYAQQA-------GI--TKTISPHTLRHSFATHLLNNGADLRVIQDLLGHANISSTD 282 Query: 211 VYTRV 215 YTRV Sbjct: 283 RYTRV 287 >UniRef50_D2RA84 Tyrosine recombinase XerD n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RA84_GARVA Length = 319 Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 72/164 (43%), Gaps = 31/164 (18%) Query: 65 LFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDIS 124 L L+ TG RI EA + E DL+ E V G+ K RLVP+ + Sbjct: 157 LLEFLYATGARISEAVGVKFEDIDLN----------ESVVKLTGKGSKQ--RLVPIGGCA 204 Query: 125 YVRQMESWMITTRPR-----RREPLW--------AVTDETMRNWLKQAVRRAEADGVHFS 171 VR + ++M +RP +RE A++ ++ + QA RA+ D Sbjct: 205 -VRALRNYMEKSRPELALKGKRELHTIFLNKRGSALSRQSAWEIVTQAGERAKLDK---- 259 Query: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 P+ PHT RHS H++ + +Q L GH + ++YT + Sbjct: 260 -PLHPHTLRHSLATHLIAGGADVRTVQELLGHASVTTTQIYTHI 302 >UniRef50_D2R836 Tyrosine recombinase XerC n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R836_9PLAN Length = 323 Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 51/196 (26%), Positives = 85/196 (43%), Gaps = 36/196 (18%) Query: 42 PAYLLAPEVSALLFYMPDQ-----RHHMLFATLWNTGMRIGEARMLTPESFDLD-GVRPF 95 P +L E+ LL P R + TL++ G+R+ E + E DLD GV Sbjct: 110 PHFLAGDELGKLLEAPPADDPAGLRDRAMLETLYSAGLRVSELVGMNDEDLDLDEGV--- 166 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWM-------ITTRPRRREPLWA-- 146 VRI RG+ K+ RL PL + +R ++ W+ I+ R+ A Sbjct: 167 VRI--------RGKGSKE--RLAPLGSFA-LRAIKKWLAHRKLASISVSSTRKSASKAGH 215 Query: 147 ----VTDETMRNWLKQAVRRAEADGVHFS---IPVTPHTFRHSYIMHMLYHRQPRKVIQA 199 T++ + ++V R + + + TPHT RH++ H+L + +Q Sbjct: 216 GTPVFTNKFGKRLTTRSVARMLEKYLKLTGLDLRTTPHTLRHTFATHLLDRGADIRSVQE 275 Query: 200 LAGHRDPRSMEVYTRV 215 L GH+ + ++YT V Sbjct: 276 LLGHKSLVTTQIYTHV 291 >UniRef50_P62590 Integrase/recombinase n=343 Tax=root RepID=INT2_ECOLX Length = 337 Score = 50.1 bits (118), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 61/219 (27%), Positives = 86/219 (39%), Gaps = 48/219 (21%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATL-WNTGMRIGEARMLTPESFDLDGVRPFVR--- 97 P L EV +L ++ + H LFA L + TGMRI E L + D D VR Sbjct: 114 PVVLTPDEVVRILGFLEGE--HRLFAQLLYGTGMRISEGLQLRVKDLDFDHGTIIVREGK 171 Query: 98 ---------------ILSEKVRARRGRPPKDE------VRLVPLTDISYVRQMESW---- 132 L E++ R KD+ V L + Y R SW Sbjct: 172 GSKDRALMLPESLAPSLREQLSRARAWWLKDQAEGRSGVALPDALERKYPRAGHSWPWFW 231 Query: 133 -----MITTRPR----RREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSY 183 +T PR RR ++ D+T + K+AV +A + P TPHT RHS+ Sbjct: 232 VFAQHTHSTDPRSGVVRRHHMY---DQTFQRAFKRAVEQAG-----ITKPATPHTLRHSF 283 Query: 184 IMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAA 222 +L + +Q L GH D + +YT V + A Sbjct: 284 ATALLRSGYDIRTVQDLLGHSDVSTTMIYTHVLKVGGAG 322 >UniRef50_C6LKW3 Tyrosine recombinase XerD n=3 Tax=Clostridiales RepID=C6LKW3_9FIRM Length = 305 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 54/230 (23%), Positives = 97/230 (42%), Gaps = 65/230 (28%) Query: 42 PAYLLAPEVSALLFYMPDQ-------------RHHMLFATLWNTGMRIGEARMLTPESFD 88 P +L E+ LL YM D R + L+ TG R+ E + +S + Sbjct: 104 PRIILREEIEKLLNYMYDCLKKNVLTGYKYQLRDIAVVEVLFATGARVYEISNIREDSVN 163 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDIS-------YVRQMES-------WMI 134 L+ + +RI+ G+ K+ R V +++ S Y +Q E+ + I Sbjct: 164 LNSGQ--IRIM--------GKGGKE--RYVQISNSSVLAVLRKYYKQNENEIKKSGCFFI 211 Query: 135 TTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPR 194 R R T++++R+ LK+ ++A G+ +I TPH FRHS+ +++ Sbjct: 212 NNRGNR------YTEQSIRSMLKKYAKQA---GIARNI--TPHMFRHSFATYLIEEGVDV 260 Query: 195 KVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILRTLPP 244 +Q + GH ++ ++Y + A + AEILR + P Sbjct: 261 SCVQQIRGHSSIKTTQIYIHIAA---------------KKQAEILREMHP 295 >UniRef50_B5JZ18 Phage integrase n=14 Tax=Rhodobacteraceae RepID=B5JZ18_9RHOB Length = 320 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 83/198 (41%), Gaps = 27/198 (13%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P L E+ +L P + ++ + + GMR GE L + D+D + +RI+ Sbjct: 123 PLVLSKKEIKRILAMAPSLKARVMLSLAYGCGMRAGEVVRL--KVGDIDSDQEIIRIVQS 180 Query: 102 KVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRRE-----------PLWAVTDE 150 K R KD + ++P+ +S +R + W RP ++ P + Sbjct: 181 KGR-------KDRIVMLPVDILSLLR--DWW--KERPTGQDKDVPAPERVLFPSYRGKHL 229 Query: 151 TMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSME 210 + R + A G+ + PVT HT RHS+ H+L +VIQAL GH + Sbjct: 230 SARQISRLFKETAREAGI--TKPVTLHTLRHSFATHLLERGVDIRVIQALLGHSKLTTTA 287 Query: 211 VYTRVFALDMAATLAVPF 228 Y V A M A + P Sbjct: 288 RYASV-ATGMIAAVDSPL 304 >UniRef50_A1TZA4 Integron integrase n=5 Tax=Gammaproteobacteria RepID=A1TZA4_MARAV Length = 329 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 27/67 (40%), Positives = 37/67 (55%), Gaps = 5/67 (7%) Query: 149 DETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRS 208 D T++ K A+R+A G+H P HTFRHS+ +L + IQ L GH D R+ Sbjct: 251 DRTVQKHFKHAIRKA---GIH--KPAGSHTFRHSFATRLLESGYDLRTIQKLLGHSDVRT 305 Query: 209 MEVYTRV 215 E+YT V Sbjct: 306 TEIYTHV 312 >UniRef50_D0U5Z8 Tyrosine recombinase XerD n=1 Tax=uncultured actinobacterium RepID=D0U5Z8_9ACTN Length = 311 Score = 50.1 bits (118), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 50/167 (29%), Positives = 67/167 (40%), Gaps = 25/167 (14%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R L L+ TG RI EA L+ DLD VR+ G+ K+ R+VP Sbjct: 133 RDRALLEFLYATGARISEACGLSLS--DLDMESQLVRLF--------GKGSKE--RIVPF 180 Query: 121 TDISYVRQMESWM-ITTRPRRREPLWAVTDETMRNWL--------KQAVRR---AEADGV 168 + +E W+ R WA D +L +QA R A Sbjct: 181 GSHAKA-ALEEWLGAGGRTMLVSEQWAKRDHADAVFLGSRGTRLSRQAAWRIVQKFAQIA 239 Query: 169 HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 V+PH RHS HML H +++Q L GH + +VYTRV Sbjct: 240 EVGDEVSPHVLRHSCATHMLIHGADLRIVQELLGHASVSTTQVYTRV 286 >UniRef50_Q39RA3 Integron integrase n=3 Tax=Bacteria RepID=Q39RA3_GEOMG Length = 334 Score = 49.7 bits (117), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 55/209 (26%), Positives = 83/209 (39%), Gaps = 40/209 (19%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLD----------G 91 P L EV ALL + H ++ ++ TGMR+ E L + D + G Sbjct: 118 PVVLTVSEVQALLSRLTGT-HALMGRLMYGTGMRLMETVRLRVKDVDFERSEIIVREGKG 176 Query: 92 VRPFVRILSE-----------KVRARRG---RPPKDEVRLVPLTDISYVRQMESW----- 132 + + +L + +V A G R EV L Y W Sbjct: 177 AKDRITMLPQAVAAPLREHLGRVEALHGADLRAGFGEVHLPHALGKKYPNAGREWGWQYV 236 Query: 133 ----MITTRPRRREPLWAVTDET-MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHM 187 ++T PR DE ++ ++QAVR AE + P TPHT RHS+ H+ Sbjct: 237 FPAKQLSTDPRTGVTRRHHADEKGIQRAIRQAVRDAE-----LAKPATPHTLRHSFATHL 291 Query: 188 LYHRQPRKVIQALAGHRDPRSMEVYTRVF 216 L + +Q L GH+D ++ +YT V Sbjct: 292 LQSGYDIRTVQELLGHKDVQTTMIYTHVL 320 >UniRef50_Q3Z771 Tyrosine recombinase XerD n=5 Tax=Dehalococcoides RepID=Q3Z771_DEHE1 Length = 302 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/175 (25%), Positives = 73/175 (41%), Gaps = 45/175 (25%) Query: 60 QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVP 119 +R + L+ +GMR+ E ++ D+D FVR +GR R++P Sbjct: 137 KRDKAMLELLYASGMRVTE--LVNLNVLDVDLKEGFVRCFG------KGRKE----RMIP 184 Query: 120 LTDISYVRQMESWMITTRP--------------RR-----REPLWAVTDETMRNWLKQAV 160 + + + ++ ++ RP RR R+ LW + LK Sbjct: 185 IYPQA-AQSIQEYLTEIRPNLVRAETEKALFLNRRGDRLTRQGLWQI--------LKGYA 235 Query: 161 RRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 R A D V VTPHT RHS+ HML + +Q L GH + + ++YT + Sbjct: 236 REAGLDDV-----VTPHTLRHSFATHMLSGGADLRSVQELLGHANISTTQIYTHL 285 >UniRef50_A3M1C2 Site-specific tyrosine recombinase n=15 Tax=Moraxellaceae RepID=A3M1C2_ACIBT Length = 306 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 49/196 (25%), Positives = 85/196 (43%), Gaps = 48/196 (24%) Query: 43 AYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEK 102 A + AP+++ L R +F L+ G+R+ E L E +L + ++RI Sbjct: 130 ALIQAPDITTAL----GLRDRAMFEVLYACGLRVSELLNLRLELINLK--QGYLRIT--- 180 Query: 103 VRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR------------------RREPL 144 G+ K+ RLVPL + +E ++ RP+ R+ Sbjct: 181 -----GKGNKE--RLVPLGQYA-CDWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNF 232 Query: 145 WAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHR 204 W ++++ QA +AE ++PHT RH++ H+L H +V+Q L GH Sbjct: 233 WYA----IKHYALQANIQAE---------LSPHTLRHAFATHLLNHGADLRVVQMLLGHS 279 Query: 205 DPRSMEVYTRVFALDM 220 D + ++YT V + M Sbjct: 280 DLSTTQIYTHVAQVRM 295 >UniRef50_C3AFM2 Putative uncharacterized protein n=2 Tax=Bacillus RepID=C3AFM2_BACMY Length = 280 Score = 49.7 bits (117), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/182 (24%), Positives = 73/182 (40%), Gaps = 27/182 (14%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P +L E+ L + + LF L++TG RIGE L + V + Sbjct: 105 PKFLSELEIEHLREACHNSMENALFEFLYSTGCRIGEVVKLNRVDINFSTNSVIVHGKGD 164 Query: 102 KVRARRGRPPKDEVRLVPLTDISYVRQMES--------WMITTRPRRREPLWAVTDETMR 153 K R EV I R ++ ++ RP+RR ++ + +R Sbjct: 165 KER---------EVYFNTRCTIWLKRYLDERDDEEPCLFITERRPKRR-----MSIDNLR 210 Query: 154 NWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYT 213 +K+ RA + PH RHSY HM+ + P +VIQ+L GH + +Y Sbjct: 211 FIIKRISNRARIKK-----SIHPHQLRHSYATHMINNGAPLEVIQSLLGHEKSETTRIYA 265 Query: 214 RV 215 ++ Sbjct: 266 QL 267 >UniRef50_Q30SH3 Integron integrase n=2 Tax=Bacteria RepID=Q30SH3_SULDN Length = 320 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 55/223 (24%), Positives = 87/223 (39%), Gaps = 44/223 (19%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDL--------DG-- 91 P L EV ++ M + + ++ ++ G+R+ E + + + D DG Sbjct: 104 PVVLTKDEVQNIILNM-NGIYQLMVKLMYGCGLRMSEVQNIRIKDIDFGFDKIYVWDGKS 162 Query: 92 -----------VRPFVRILSEKVRARRGRPPKDEVRLVPL--------------TDISYV 126 ++ ++I EKVR + KD V + T Y+ Sbjct: 163 LKDRTLPLPMKIKDELKIQVEKVRELHQKDLKDGYGSVYIPYAFERKFPKAKFETKWQYI 222 Query: 127 RQMESWMITTRPRRREPL-WAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIM 185 M + I T PR E + D T+ +KQAV ++ D VT H FRHSY Sbjct: 223 FPMNT--IATDPRSGERRRHHILDATLSRNIKQAVTKSNIDK-----RVTSHIFRHSYAT 275 Query: 186 HMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPF 228 H+L + IQ L GH+ + +YT V + A L P Sbjct: 276 HLLQAGIDLRSIQELLGHKSVETTMIYTHVVSEMNKAKLISPL 318 >UniRef50_Q1AW35 Phage integrase n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AW35_RUBXD Length = 309 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 30/168 (17%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R H L A + G+R E L F G +R+ RG+ D+VR VP+ Sbjct: 141 RDHALLAVMAGCGLREAEVVGLRVGDFREHGDAVLLRV--------RGK--GDKVRNVPV 190 Query: 121 TDISYVRQMESWMITT------RPRRREPLWA--------VTDETMRNWLKQAVRRAEAD 166 + + R ++ +++++ + R+PL+ +T +++N +K+ VR A Sbjct: 191 SPELW-RLVQRYVLSSGRSLSSQTDARKPLFPSRVGKDRPLTTRSIQNIVKKYVR---AA 246 Query: 167 GVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTR 214 G++ P++PH+ RH+ +M ++ P VIQ GH DP++ Y R Sbjct: 247 GIN--KPISPHSIRHTVGTNMAMNQAPLLVIQQFLGHSDPKTTMRYIR 292 >UniRef50_Q67PC5 Recombinase n=2 Tax=Firmicutes RepID=Q67PC5_SYMTH Length = 356 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 58/224 (25%), Positives = 94/224 (41%), Gaps = 42/224 (18%) Query: 13 RVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ------RHHMLF 66 R L+P P T RR+ P +L E+ LL PD R L Sbjct: 129 RADLVPTNPVAGVHTPKLERRL-------PVFLDEEEIGGLL-SQPDTHTPLGLRDRALL 180 Query: 67 ATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYV 126 L+ TG+R+GE ++ D+D +V I+ K R R P E L L Y+ Sbjct: 181 ELLYATGLRVGE--LVALNRGDIDYSEGWV-IVWGKGRKERAVPVGSEA-LQALGH--YL 234 Query: 127 RQMESWMI---------TTRPRRREPLWA------VTDETMRNWLKQAVRRAEADGVHFS 171 R + W + + P ++PL+ ++D ++R L + V + + S Sbjct: 235 R--DGWPVLRARAPAAEQSLPEAKQPLFLNKLGGRLSDRSVRRLLDRYVSQ-----LALS 287 Query: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 ++PH RH++ HML H + +Q + GH + ++YT V Sbjct: 288 RQISPHKIRHTFATHMLNHGADLRAVQEMLGHASLSTTQIYTHV 331 >UniRef50_A3DD82 Tyrosine recombinase XerD subunit n=13 Tax=Firmicutes RepID=A3DD82_CLOTH Length = 296 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/185 (23%), Positives = 77/185 (41%), Gaps = 24/185 (12%) Query: 37 STGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV 96 ST L P+ L Y R + L+ TG+R+ E S DLD V Sbjct: 114 STKEVELLLEQPKCDDLKGY----RDKAMLELLYATGIRVSELI-----SLDLDDVN--- 161 Query: 97 RILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWM------ITTRPRRREPLWAVTDE 150 + + +R +G R+VP+ +S V ++ ++ + RP + V + Sbjct: 162 -LEMQYIRCNKGARE----RIVPIGSVS-VNALQEYLTKSRNLLIQRPDEKALFVNVNGK 215 Query: 151 TMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSME 210 + + + + + +TPHT RHS+ H+L + + IQ + GH D S + Sbjct: 216 RLTRQGFWKIIKQYKNQAKINKDITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQ 275 Query: 211 VYTRV 215 +Y ++ Sbjct: 276 IYAQL 280 >UniRef50_B4D116 Integrase family protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D116_9BACT Length = 315 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 70/160 (43%), Gaps = 17/160 (10%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARR---GRPPKDEVRL 117 R L L+ +G+R+ E E+ DLD +R+ + + R G+ D +R Sbjct: 151 RDRALLELLYASGLRVSELVNARLENLDLDA--RIIRVTGKGNKMRLVPVGQKACDAIR- 207 Query: 118 VPLTDISYVRQMESWMITTRPRRREPLWAVTDE--TMRNWLKQAVRRAEADGVHFSIPVT 175 +Y+ + M+ + L + + T+R W + +A A I V Sbjct: 208 ------AYLEKERPEMVGKKTGSEVFLSSRGTKLTTVRIW---QIVKACAKNAGLDINVY 258 Query: 176 PHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 PH RHS+ H+L + ++IQ + GH D + ++YT V Sbjct: 259 PHLLRHSFATHLLSNGADLRIIQEMLGHADISTTQIYTHV 298 >UniRef50_C1SMY6 Site-specific recombinase XerD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMY6_9BACT Length = 312 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/164 (24%), Positives = 69/164 (42%), Gaps = 40/164 (24%) Query: 69 LWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDI----- 123 ++ TG+R+ E L D G+R VR G+ K+ R+VP+ D+ Sbjct: 151 MYGTGVRVSELVGLNLSDIDFGGMRILVR----------GKGKKE--RIVPIADMHIEMI 198 Query: 124 ------------SYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFS 171 Y+ E+ I R +TD ++R +++ ++ A Sbjct: 199 NDYLDVKMDICNGYLPDNEAIFINKFGSR------LTDRSVRRIVEKYLKIAG-----LP 247 Query: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 + +PH+FRHSY H+L + IQ+L GH + + YT + Sbjct: 248 MDFSPHSFRHSYATHLLEGGADLRTIQSLLGHESLTTTQKYTHL 291 >UniRef50_C8PTU7 Integron integrase n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PTU7_9SPIO Length = 426 Score = 49.3 bits (116), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 56/212 (26%), Positives = 82/212 (38%), Gaps = 31/212 (14%) Query: 35 ATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLD---- 90 A + PA L E + + +P+ + + L+ TGMR+ E+ L + D D Sbjct: 202 AKKSKKLPAVLSREETAKIFSLLPENDYGLFIRLLYGTGMRLMESLRLRVQDIDFDKNEI 261 Query: 91 ------GVR------------PFVRILSEKVRARRGRPPKDEVRLVPLTDI---SYVRQM 129 G + P + L E VR KD LVPL Y Sbjct: 262 TVHCGKGAKDRKTMLPVSLKFPLQKHL-ENVRRIHEADCKDGFGLVPLPSALAKKYPNAG 320 Query: 130 ESWMIT-TRPRRREPLWAVTDETMRNWLK-QAVRRAEADGVHFS---IPVTPHTFRHSYI 184 ++W P+ R T E R+ + ++R + V S P+ HTFRHS+ Sbjct: 321 KTWAWQWVFPQARRWQNKETGEQGRHHIDPSVIQRTLHEAVLRSGIPKPIGCHTFRHSFA 380 Query: 185 MHMLYHRQPRKVIQALAGHRDPRSMEVYTRVF 216 H+L + IQ L GH D + VYT V Sbjct: 381 THLLESGYDIRTIQELLGHSDVSTTMVYTHVL 412 >UniRef50_Q1VZY8 Tyrosine type site-specific recombinase n=5 Tax=Psychroflexus torquis ATCC 700755 RepID=Q1VZY8_9FLAO Length = 379 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/178 (23%), Positives = 82/178 (46%), Gaps = 13/178 (7%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P L EV ++ + +H + T++ G+R+GE ++ D+ ++ I Sbjct: 191 PNILHINEVRRIINSPSNLKHKTILHTIYGAGLRVGE--LIRLRVVDIRSEEGYIFIKDS 248 Query: 102 KVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVR 161 K + R + L L + + + W+ + + + ++++ ++AV+ Sbjct: 249 KGKKDRHTVLSKHL-LELLREYYKIYKPAYWLFEGQTGGQ-----YSSTSIQSIYRKAVK 302 Query: 162 RAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALD 219 E +G +S TPHT RHS+ H++ + IQA GH ++ E+YTRV A++ Sbjct: 303 --ETNGNPWS---TPHTLRHSFATHLMERGTSLRHIQAALGHNSSKTTEIYTRVLAIN 355 >UniRef50_B9XMB7 Integrase family protein n=1 Tax=bacterium Ellin514 RepID=B9XMB7_9BACT Length = 306 Score = 48.9 bits (115), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 77/160 (48%), Gaps = 35/160 (21%) Query: 70 WNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQM 129 + +G+R+ E R + E L+ F+ ++ G+ K+ R+VP+ + V+ + Sbjct: 152 YASGLRLAELRNIRMEQLHLEV--GFINVI--------GKGNKE--RVVPVGSKA-VQAL 198 Query: 130 ESWMITTRPR--------------RREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVT 175 + ++ + RP+ R P AVT + +K V+R+ GV + VT Sbjct: 199 QRYLESGRPKLVTPRSPANVFLTMRGTPFAAVT---LWKRIKDRVKRS---GV--ARNVT 250 Query: 176 PHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 PH RHS+ H+L H +VIQ L GH + + E+YT V Sbjct: 251 PHMLRHSFATHLLEHGADLRVIQELLGHANISTTEIYTHV 290 >UniRef50_C9NXY9 Integron integrase IntI2 n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NXY9_9VIBR Length = 321 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/228 (23%), Positives = 87/228 (38%), Gaps = 46/228 (20%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGV 92 R AT P + EV +L ++ + + ++ L+ +G+RI E L + DL Sbjct: 95 RHATKQRQLPVVITPNEVKQVLSHL-NGKEKLIVELLYGSGLRISECLRLRVQDIDLSN- 152 Query: 93 RPFVRILSEKVRARRGRPPKDEVRLVPLTDIS--YVRQMESWMITTRPRR---------- 140 LS VR +G+ + + D+ + Q E I Sbjct: 153 ------LSITVRDGKGKKDRQTLLSKQCVDVLKLLIEQAEQVQIADNKHGIGPSLPYAIH 206 Query: 141 -------REPLWAV-------------TDETMRNWL-----KQAVRRAEADGVHFSIPVT 175 R+ W +D R+ L ++A+ RA A + VT Sbjct: 207 KKYPNAFRKLAWMFIFPSPSISHSQYNSDHPSRHHLHSSVIRKALSRAVAKTT-INKKVT 265 Query: 176 PHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAAT 223 HTFRHS+ H+L + + +Q L GH D ++ ++YT V A T Sbjct: 266 CHTFRHSFATHLLQAGRDIRSVQELLGHNDVKTTQIYTHVIGQHYAGT 313 >UniRef50_A8VRZ0 Putative helix-turn-helix protein, YlxM/p13 family protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VRZ0_9BACI Length = 303 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/191 (23%), Positives = 81/191 (42%), Gaps = 36/191 (18%) Query: 42 PAYLLAPEVSALLFYMPDQ-----RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV 96 P++L E+ A+ + R+ + L+ +G+R E L + DLD Sbjct: 114 PSFLYENEMQAIFDAIDTDSLLGARNLAIIELLYASGIRASECTGLKLKDIDLD------ 167 Query: 97 RILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR------REPLW----- 145 LS + +G+ R +P+ S+ + S + R + +PL+ Sbjct: 168 --LSTLLVMGKGKKE----RFLPVG--SFAVEALSLYLDKRTAKFGPHAQSDPLFINYRG 219 Query: 146 -AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHR 204 A+TD +R L + + A + +TPH RH++ HML + +Q L GH Sbjct: 220 GALTDRGLRKILAKVIEDAS-----LTSKLTPHVIRHTFATHMLNEGADLRTVQELLGHT 274 Query: 205 DPRSMEVYTRV 215 D ++ ++YT V Sbjct: 275 DLKATQIYTHV 285 >UniRef50_A6G731 Integrase/recombinase XerD n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G731_9DELT Length = 302 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 60/220 (27%), Positives = 84/220 (38%), Gaps = 51/220 (23%) Query: 3 NVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRH 62 N +P S E V L APGVD T L LR +ALL +M Sbjct: 111 NKLPELLSREEVVRLIAAPGVD--TPLGLRD-----------------TALLEFM----- 146 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 + TG R+ EA L S LD + + G+ K R+VPL D Sbjct: 147 -------YATGCRVSEACDLELSSLHLD----------QGLVVLTGKGSKQ--RMVPLGD 187 Query: 123 ISYVRQMESWMITTRPRR-----REPLWAVTDETMRNWLKQAVRRAEADGVHFSI--PVT 175 + V + +W+ RP RE V R + R V I ++ Sbjct: 188 CALVALL-AWLEEGRPELVARAPREAHVFVNKRGSRLSRQGCFFRLRQHAVSAGITRDIS 246 Query: 176 PHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 PH RHS+ H++ + +Q L GH D + +VYT + Sbjct: 247 PHKLRHSFATHLIEGGADLRAVQTLLGHADISTTQVYTHL 286 >UniRef50_A3YUE8 Integron integrase n=1 Tax=Synechococcus sp. WH 5701 RepID=A3YUE8_9SYNE Length = 278 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/61 (40%), Positives = 36/61 (59%), Gaps = 1/61 (1%) Query: 156 LKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 +++AVRRA + P T HTFRHS+ H+L Q + IQ L GH D ++ +YT+V Sbjct: 198 IQRAVRRA-VLAAGLTKPATCHTFRHSFATHLLERGQDIRTIQGLLGHSDVKTTMIYTQV 256 Query: 216 F 216 Sbjct: 257 L 257 >UniRef50_C0W4G9 Phage integrase family protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W4G9_9ACTO Length = 437 Score = 48.9 bits (115), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 24/65 (36%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Query: 44 YLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKV 103 +L + + LL +PD H L +TL+ G+R GEA LTP DLD +P VR+ Sbjct: 212 FLTPTQFATLLDCVPDA-HKPLVSTLYGLGLRFGEATALTPADLDLDAAQPVVRVTKAWK 270 Query: 104 RARRG 108 ++G Sbjct: 271 EGKKG 275 >UniRef50_D0WF42 Tyrosine recombinase XerD n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WF42_9ACTN Length = 315 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 45/163 (27%), Positives = 65/163 (39%), Gaps = 23/163 (14%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R+ L+ G+R E L LD +RI+ + R R +VP+ Sbjct: 148 RNACALELLYGCGLRASELSGLDAGDAFLD--EGILRIVGKGSRER----------IVPI 195 Query: 121 TDISYVRQMESWMITTRPRRREP--------LWAVTDETMRNWLKQAVRRAEADGVHFSI 172 S R + S++ RP R P L A R + VR EA V Sbjct: 196 GG-SAARCLASYLEDARPLLRSPRRLTPAVMLNARGGRLSRQSIHSIVR--EAGHVIGIK 252 Query: 173 PVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 + PHT RHS+ H+L + IQ + GH D + ++YT V Sbjct: 253 DLHPHTLRHSFATHLLEGGADLRAIQEMLGHSDISTTQIYTHV 295 >UniRef50_A4BJZ1 Integron integrase; Phage integrase; Phage integrase N-terminal SAM-like domain n=1 Tax=Reinekea blandensis MED297 RepID=A4BJZ1_9GAMM Length = 325 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/80 (31%), Positives = 41/80 (51%), Gaps = 5/80 (6%) Query: 141 REPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQAL 200 R+ W + T++ +K+A +A+ + VT HT RHS+ H+L + IQ L Sbjct: 240 RKMRWHCSTSTLQKAVKKAAEQAQ-----LTKRVTCHTLRHSFATHLLTTGTDIRTIQQL 294 Query: 201 AGHRDPRSMEVYTRVFALDM 220 GH+D + +YT + DM Sbjct: 295 MGHKDLNTTMIYTHILMTDM 314 >UniRef50_C7JEV7 Phage DNA recombinase XerD n=9 Tax=Acetobacteraceae RepID=C7JEV7_ACEP3 Length = 306 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/155 (28%), Positives = 66/155 (42%), Gaps = 26/155 (16%) Query: 69 LWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQ 128 L+ +G+RI E L ++ D R++ VR + GR RLVPL+D R+ Sbjct: 147 LYASGLRISELLALPRKAIAGD-----QRMI--MVRGKGGRE-----RLVPLSD--SARE 192 Query: 129 MESWMITTRPR--------RREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFR 180 ++ R+P +T + L RAE D S PH R Sbjct: 193 AAQALLEVDAHLESPFLFPGRDPAKPMTRQAFDRILHTVAIRAEIDPARLS----PHVLR 248 Query: 181 HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 HS+ H+L H + +Q L GH D + ++YT V Sbjct: 249 HSFATHLLAHGADLRALQMLLGHADIATTQIYTHV 283 >UniRef50_C2D6I8 Tyrosine recombinase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6I8_9ACTN Length = 342 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 53/184 (28%), Positives = 77/184 (41%), Gaps = 32/184 (17%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPE--SFDLDGVRPFVRILSEKV------RAR------ 106 R L L+ TG RI EA L SFD VR F + E++ AR Sbjct: 172 RDRALLELLYATGCRISEAAHLCVSDISFDSKQVRLFGKGSKERIVPIYPECARILHMYL 231 Query: 107 -RGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEA 165 RP V L + + + + I+TR + A++D+ +R + +R + Sbjct: 232 TTARP----VLLSKQKNQAQAQTNQHVFISTRGK------AMSDQALRYVFEHYMRLS-- 279 Query: 166 DGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVF--ALDMAAT 223 H TPHT RHS+ +L H + +Q L GH + ++YT V AL AA Sbjct: 280 ---HLQEIATPHTMRHSFATELLSHGADLRSVQELLGHASLATTQIYTHVSVNALKDAAR 336 Query: 224 LAVP 227 A P Sbjct: 337 RANP 340 >UniRef50_A4G2A1 Tyrosine recombinase XerD n=3 Tax=Proteobacteria RepID=A4G2A1_HERAR Length = 309 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 19/54 (35%), Positives = 31/54 (57%) Query: 162 RAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 + A + P++PHT RH++ H+L H +V+Q L GH D + ++YT V Sbjct: 240 KKHAAAAEINAPLSPHTLRHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHV 293 >UniRef50_B1L3A1 Integrase family protein n=1 Tax=Candidatus Korarchaeum cryptofilum OPF8 RepID=B1L3A1_KORCO Length = 262 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 41/158 (25%), Positives = 70/158 (44%), Gaps = 39/158 (24%) Query: 69 LWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDIS--YV 126 L TGMR+GE L + DL R V+ D+ R V T+ + ++ Sbjct: 125 LAETGMRVGELVSLKWDDLDLGNRRALVK------------GKGDKSRYVYFTERTERFL 172 Query: 127 RQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMH 186 R++E RR ++ V+D T+R W+ Q ++ PH RH++ + Sbjct: 173 RELE--------RRGSRVFPVSDRTVRRWVSQLLK------------THPHAVRHAFAVW 212 Query: 187 MLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATL 224 L +V+Q + GH + R+ E+Y LD++ +L Sbjct: 213 FLSSGGSPRVLQHILGHSNLRTTEIY-----LDISQSL 245 >UniRef50_D2RKG6 Tyrosine recombinase XerD n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RKG6_ACIFE Length = 301 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/197 (23%), Positives = 81/197 (41%), Gaps = 32/197 (16%) Query: 35 ATSTGATPAYLLAPEVSALLFYMPDQ------RHHMLFATLWNTGMRIGEARMLTPESFD 88 A + G +++ E LF PD R + ++ TGMR+ E L S + Sbjct: 105 AGTRGVVLPKVMSLEEVKQLFSAPDLTQPEGFRDRTMLEVMYATGMRVSELLSLKRASVN 164 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP------RRRE 142 L+ + G+ K+ RL+PL + ++ ++ ++ RP + + Sbjct: 165 LE----------TRYVIAYGKGAKE--RLIPLGQYA-IQYLKKYLAQVRPLFVKNGKDDD 211 Query: 143 PLWAVTDET----MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQ 198 L+ T R W + RA P+TPH RHS+ HML + + +Q Sbjct: 212 SLFLTIRGTGMTRQRFW---QIIRAYGVKAGLQKPLTPHILRHSFATHMLDNGADLRTVQ 268 Query: 199 ALAGHRDPRSMEVYTRV 215 L GH D + ++YT + Sbjct: 269 ELLGHADISTTQIYTHL 285 >UniRef50_C8JT99 Tyrosine recombinase XerC subunit n=1 Tax=Listeria monocytogenes FSL N3-165 RepID=C8JT99_LISMO Length = 291 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 46/173 (26%), Positives = 75/173 (43%), Gaps = 26/173 (15%) Query: 54 LFYMPDQ---RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRP 110 +F M D+ LF L++TG+R+ E L FD + +V G+ Sbjct: 118 IFDMEDKTTGYQEFLFDFLYSTGIRLAEFINLNIYDFDFEN----------RVITVVGKG 167 Query: 111 PKDEVRL----VPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAE-- 164 K+ + + + T +SY++ ++ M + R+ + + D LK A E Sbjct: 168 NKERIVVYNESLEQTMLSYLKARQAIM---KFHRKSHSYFLIDFNTGQRLKAARVYNEII 224 Query: 165 --ADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 D VH I PH RHS+ H+L + + IQ L GH + E+YT+V Sbjct: 225 RVGDIVHRKIH--PHMLRHSFATHLLENGCDLRYIQELLGHSSVSTTEIYTKV 275 >UniRef50_Q7NVH1 Tyrosine recombinase xerC n=1 Tax=Chromobacterium violaceum RepID=XERC_CHRVO Length = 299 Score = 48.5 bits (114), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 57/222 (25%), Positives = 89/222 (40%), Gaps = 55/222 (24%) Query: 10 SPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATL 69 +P+R LLP A VD AL R S D R +F + Sbjct: 96 APKRDKLLPKALPVDGTAALLDRIEGESE-------------------LDARDRAIFELV 136 Query: 70 WNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQM 129 ++ G+R+ E L + D+D +RI RG+ K+ RLVP+ + +R + Sbjct: 137 YSCGLRLSETVALNLD--DVDFSDSLLRI--------RGKGGKE--RLVPIGAEAMLR-L 183 Query: 130 ESWMITTRPRRREPLWAV-----------TDETMRNWLKQAVRRAEADGVHFSIPVTPHT 178 +W+ EP + ++ +R+W A++ VH PH Sbjct: 184 RTWLGERSAGMDEPALFLGRHGHRLGGRQVEKRLRDW---AIKTGAGQHVH------PHM 234 Query: 179 FRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDM 220 RHS+ HML + +Q L GH + S ++YT ALD Sbjct: 235 LRHSFASHMLQSSGDLRAVQELLGHANLSSTQIYT---ALDF 273 >UniRef50_A9KZT1 Integrase family protein n=12 Tax=Alteromonadales RepID=A9KZT1_SHEB9 Length = 287 Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 47/197 (23%), Positives = 86/197 (43%), Gaps = 25/197 (12%) Query: 22 GVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARM 81 G DF LSL + P L +++ALL + + + + A + G+R+ E Sbjct: 82 GRDFTVQLSLPKRPHKL---PQLLSCQDIAALLCHCQNLKQRAMLALCYGCGLRVSELTH 138 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQM------ESWMIT 135 + + D+DG R +++ +G+ D + ++ T ++ +RQ W+ Sbjct: 139 I--KVADIDGQRQLLKVC-------QGKGAYDRLVIISPTLLTLLRQYWRAYHPVEWLFA 189 Query: 136 TRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRK 195 + + ++ + + T R L +A R A + P +PH+ RH+Y H L P Sbjct: 190 ST--YHDVVYPLHESTFRKALAKAARLAS-----ITKPCSPHSLRHAYATHQLQAGMPLH 242 Query: 196 VIQALAGHRDPRSMEVY 212 +QA GH +S E Y Sbjct: 243 QLQAQLGHHSIKSTERY 259 >UniRef50_D2BHG9 Site-specific recombinase n=5 Tax=Dehalococcoides RepID=D2BHG9_DEHSV Length = 307 Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 84/188 (44%), Gaps = 30/188 (15%) Query: 42 PAYLLAPEVSALLFYMPDQ------RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 P +L EVS LL MPD R L+ +G+R+ E L E+ DL Sbjct: 108 PEFLTTAEVSKLL-RMPDSSTPQGLRDKAFMELLYASGLRVSELVKLDIENLDLH----- 161 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP----RRREPLWAVTDE- 150 S ++R G+ K+ + L+ L I + +++++ RP +R P + Sbjct: 162 ----SHQIRVW-GKGSKERIVLMGLPAI---QSIQTYLNLGRPLLKGKRNTPALFLNPNG 213 Query: 151 ---TMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPR 207 + R++ ++ + A G+ V PH RH++ H+L +V+Q L GH + Sbjct: 214 GRLSARSFQERLDKLAHQAGI--EKHVHPHMLRHTFATHLLDGGADLRVVQELLGHSNLS 271 Query: 208 SMEVYTRV 215 + ++YT V Sbjct: 272 TTQIYTHV 279 >UniRef50_D2RKK7 Tyrosine recombinase XerC n=3 Tax=Firmicutes RepID=D2RKK7_ACIFE Length = 311 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 57/196 (29%), Positives = 87/196 (44%), Gaps = 29/196 (14%) Query: 42 PAYLLAPEVSALLFYMPD------QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 P +L E++ LL MPD +R + L++TG R+ E LT DL G R Sbjct: 121 PVFLEEFEIN-LLLRMPDCTTVLGRRDRAILEFLYSTGCRVSELVGLTLTRVDL-GNRYA 178 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETM--- 152 + + G+ K+ RLVPL V ME ++ +R E A +T+ Sbjct: 179 ILL---------GKGRKE--RLVPLGHPC-VAAMEDYLRHSRGTLMEKYQAPRHQTVFVN 226 Query: 153 ---RNWLKQAVRRAEADGVHFSI---PVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDP 206 R ++VRR V + V+PHT RH++ H+L H + +Q L GH Sbjct: 227 SRGRPLSARSVRRILDKYVEMTALQKHVSPHTIRHTFATHLLDHGADLRAVQELLGHVSL 286 Query: 207 RSMEVYTRVFALDMAA 222 + ++YT V A + A Sbjct: 287 STTQIYTHVTAERLTA 302 >UniRef50_D2R3Y9 Integrase family protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R3Y9_9PLAN Length = 314 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 86/200 (43%), Gaps = 38/200 (19%) Query: 36 TSTGATPAYLLAPEVSALLFYMPD------QRHHMLFATLWNTGMRIGEARMLTPESFDL 89 T T AT +L+P V+A L P +R L L+ TG R E ++ E DL Sbjct: 117 TKTAATIPDVLSPTVAARLLDAPQPYDPLFRRDRALLELLYATGCRASEVSVM--EVRDL 174 Query: 90 DGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR------RREP 143 + ++ RG+ K+ RLVPL D + +E+++ RP+ + P Sbjct: 175 R--------IEDRFCLARGKGSKE--RLVPLGDPALA-AVEAYLEHERPKLAAKSKQGVP 223 Query: 144 LWAV--------TDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRK 195 W + T + + +KQ R A ++PHT RHS+ H+L + Sbjct: 224 PWLLLSSRGQRLTRQKIWELVKQYALRCGAPA-----SMSPHTLRHSFATHLLSGGADLR 278 Query: 196 VIQALAGHRDPRSMEVYTRV 215 +Q L GH + ++YT V Sbjct: 279 QVQELLGHASIGTTQIYTHV 298 >UniRef50_D0GL18 Tyrosine recombinase XerD n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GL18_9FUSO Length = 315 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/174 (24%), Positives = 81/174 (46%), Gaps = 17/174 (9%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R ++ L TG R+ E L + + G F+++L G+ K R+VP+ Sbjct: 155 RDRLIIKFLIATGARVSEILNLNIKDVENQGY-EFIKVL--------GKGSK--YRIVPI 203 Query: 121 TDISYVRQMESWMITTRPRRR--EPLWAVTDETMR-NWLKQAVRRAEADGVHFSIPVTPH 177 + S +++ ++ RP+ + E + + +T R N+ K+ + A+ G+ + V PH Sbjct: 204 YE-SLENEIKDYISNYRPKLKGSESSFKLFPDTRRENFWKRLKKTAKDAGIEKN--VYPH 260 Query: 178 TFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 FRHS +L + +++Q + GH + + E+YT V D+ GD Sbjct: 261 IFRHSVATVLLSNGADIRIVQEILGHANISTTEIYTHVEKSDLKRIYNKIKIGD 314 >UniRef50_A8UM85 Tyrosine type site-specific recombinase n=2 Tax=unclassified Flavobacteriales (miscellaneous) RepID=A8UM85_9FLAO Length = 376 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 49/180 (27%), Positives = 82/180 (45%), Gaps = 25/180 (13%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P L +V ++ + +H + + L+++G+R E ++ + D+D R +RI Sbjct: 202 PKVLSKEDVLKVITNTNNLKHKCIVSLLYSSGIRRNE--LIHLKISDIDSKRMLIRI--- 256 Query: 102 KVRARRGRPPKDEVRLVP---LTDI-SYVRQMESWMITTRPRRR--EPLWAVTDETMRNW 155 A +G+ KD L+ L D+ Y +Q W +P + E L+ + Sbjct: 257 --DAAKGK--KDRYTLLSHALLKDLRDYYKQ---W----KPEKYIFEGLYG--KQYSAQS 303 Query: 156 LKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 + Q V+ A A I VTPH RHS+ H+L + IQ L GH ++ E+YT V Sbjct: 304 VGQIVKNA-AIKARIQITVTPHMLRHSFATHLLEDGVDIRQIQVLLGHSSTKTTEIYTHV 362 >UniRef50_Q2GDW4 Site-specific recombinase, phage integrase family n=2 Tax=Neorickettsia RepID=Q2GDW4_NEOSM Length = 307 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 47/162 (29%), Positives = 71/162 (43%), Gaps = 20/162 (12%) Query: 60 QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVP 119 +R+ L L+ +G+RI EA LT D ++I+ + R R +RL+P Sbjct: 146 KRNIALCYLLYGSGLRISEALSLTVA----DLTNSEIKIIGKGGRERM-------IRLLP 194 Query: 120 LTDISYVRQMESWMITTRPRRREPL-WAVTDETMRNWLKQAVRRAEAD---GVHFSIPVT 175 + VR S I + P + + + D + AV RA G + +T Sbjct: 195 I-----VRVALSDYIASCPFQPDAGGFLFLDRNGNKLCRTAVARAFLSIRRGFNLPDHIT 249 Query: 176 PHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFA 217 PH RHS+ H+L + IQ L GH S EVYT++ A Sbjct: 250 PHALRHSFATHLLQEGVGVRKIQELLGHASLASTEVYTKLNA 291 >UniRef50_B5EB31 Tyrosine recombinase XerD n=4 Tax=Deltaproteobacteria RepID=B5EB31_GEOBB Length = 292 Score = 48.1 bits (113), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 51/186 (27%), Positives = 79/186 (42%), Gaps = 26/186 (13%) Query: 42 PAYLLAPEVSALLFYMPDQ-----RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV 96 PA L EV ALL D R + L+ TG+R+ E L G++ Sbjct: 105 PAVLSGREVEALLSSPLDTGAQELRDKAMLELLYATGLRVSE----------LVGLKLSE 154 Query: 97 RILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMITTRPRRREPLWAVTDE 150 LS G+ K+ RLVP+ + + Y++Q ++ + L + Sbjct: 155 VNLSAGYLMTIGKGDKE--RLVPMGESACHATGVYLQQARGELLKEKASTLLFLSRLGGG 212 Query: 151 TMRNWLKQAVR-RAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSM 209 R ++ RA GV SI +PHT RHS+ H+L + + +Q + GH D S Sbjct: 213 MSRQAFWNIIKKRALQAGVRTSI--SPHTLRHSFATHLLENGADLRSVQIMLGHADLSST 270 Query: 210 EVYTRV 215 ++YT V Sbjct: 271 QIYTHV 276 >UniRef50_A9IB51 Putative integrase/recombinase n=2 Tax=Bordetella petrii DSM 12804 RepID=A9IB51_BORPD Length = 349 Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 59/227 (25%), Positives = 94/227 (41%), Gaps = 42/227 (18%) Query: 46 LAPEVSALLFYMPDQRHHM------LFATLWNTGMRIGEARMLTPESFDLDGVRPFVRIL 99 L+ E LL P+ R M L + L++TG R+ E + L R+L Sbjct: 130 LSIEAVELLLQQPNARKPMGRRDLVLLSVLYDTGARVQELANMNVSDLKLTAP-ATARLL 188 Query: 100 SEKVRARRGRPPKDEVRLVPLTD------ISYVRQMESWMITTRPRRREPLWA------V 147 + + VRLVPL +SY+++ + + R PL+ + Sbjct: 189 GKGAK----------VRLVPLLAPTTALLVSYLQEHHGQYLEQKDR---PLFCNNVRKRL 235 Query: 148 TDETMRNWLKQAVRR-AEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDP 206 T + L++ R ++ + ++PHT RHS MH+L I+ L GH D Sbjct: 236 TRAGISYILQKYAREVSQGNPGLLGTKISPHTLRHSKAMHLLQAGVNLIYIRDLLGHSDI 295 Query: 207 RSMEVYTRV------FALDMA--ATLAVPFTGDGRDAAEILRTLPPL 245 ++ E+Y R AL+MA T P+ G+D E+L L L Sbjct: 296 KTTEIYARADLDSKKAALEMAYPGTSRTPYPAWGQD-GELLSWLQSL 341 >UniRef50_A8FD78 Tyrosine recombinase xerC n=89 Tax=Bacillaceae RepID=XERC_BACP2 Length = 305 Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 45/193 (23%), Positives = 79/193 (40%), Gaps = 37/193 (19%) Query: 42 PAYLLAPEVSALLFYMPD------QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 P++L E+ L F + D QR+ + L+ TGMR+ E L DL Sbjct: 111 PSFLYEEELKEL-FTVSDVSTPLGQRNQAILELLYATGMRVSELCSLKESDLDLSMDTVL 169 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDISY---VRQMESWMITTRPRRREPLWA------ 146 V G+ K R VP ++ + +E + + + ++ A Sbjct: 170 VH----------GKGSKQ--RYVPFGSYAHEALITYLEDGRLKLKAKGKDRADAYVFLNQ 217 Query: 147 ----VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAG 202 +TD +R L + +++A ++ + PH RH++ H+L + +Q L G Sbjct: 218 RGAPLTDRGVRFILTELMKKASG-----TLHIHPHMLRHTFATHLLNEGADLRSVQELLG 272 Query: 203 HRDPRSMEVYTRV 215 H + S +VYT V Sbjct: 273 HSNLSSTQVYTHV 285 >UniRef50_Q30R56 Tyrosine recombinase XerD subunit n=5 Tax=Epsilonproteobacteria RepID=Q30R56_SULDN Length = 278 Score = 47.8 bits (112), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 78/169 (46%), Gaps = 27/169 (15%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R + + L+ TG RI E L E D++G E + R + K+ R+VP Sbjct: 122 RDYAMIIFLYATGARISECLALRRE--DIEG---------EWLHIRHAKGEKE--RIVP- 167 Query: 121 TDISYVRQ--MESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGV-HFSIPVTPH 177 I++V + ++++M + +E +W+ N+ + + R A + + V+PH Sbjct: 168 --IAFVAKTAVDAYM-NELKKTKEYVWS-------NYKGEKLSRISAYKITQKYLGVSPH 217 Query: 178 TFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAV 226 RHSY ++ +V+Q L GH + ++YT + D+ TL V Sbjct: 218 VLRHSYATALIAGGADLRVVQELLGHSSLLTTQIYTHIQKQDLKETLEV 266 >UniRef50_Q2RJP7 Tyrosine recombinase XerD subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJP7_MOOTA Length = 313 Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/169 (26%), Positives = 75/169 (44%), Gaps = 32/169 (18%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R + TL+ +G+R+ E ++ + DLD V + R+L + R R +VPL Sbjct: 138 RDRAILETLYASGIRVAE--LVGMDQDDLDLVAGYARVLGKGRRER----------VVPL 185 Query: 121 TDISYVRQMESWMITTRPR---RREP-----------LWAVTDETMRNWLKQAVRRAEAD 166 + V+ +E+++ RP RR P +T +R L V +A Sbjct: 186 GRYA-VKALENYLHRARPELAARRIPPEPRALFLNHLGGRLTTRGVRERLSHYVEKAA-- 242 Query: 167 GVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 V+PHT RH++ H+L +V+Q L GH + ++YT + Sbjct: 243 ---LRRGVSPHTIRHTFATHLLEGGADLRVVQELLGHIRLATTQIYTHI 288 >UniRef50_C0A614 Site-specific recombinase XerD-like protein n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A614_9BACT Length = 448 Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 53/190 (27%), Positives = 82/190 (43%), Gaps = 18/190 (9%) Query: 49 EVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRG 108 E++AL H + F L TG R+ E R+L F G +PFV I + R+ Sbjct: 185 ELAALFAAAKSTSHRIAFMLLAYTGQRVKEIRLLVWGDFTF-GAKPFVLIRETSTKDRKK 243 Query: 109 RPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGV 168 RP RLV +I R ++ RP +R DE W + +V +A G+ Sbjct: 244 RPIPLHPRLV--AEIEAFRPADA-----RPDQRV---FPADENFPKW-EDSVAAFKAAGI 292 Query: 169 H----FSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPR-SMEVYTRVFALDMAAT 223 + H R ++ + ++ Q L GH DPR + VYT V AL++ Sbjct: 293 KKTDDLGRTLHLHALRKTFQTLGVKAGVNQRAAQELLGHTDPRLTAGVYTDVAALELHGE 352 Query: 224 LA-VPFTGDG 232 +A +P+ G+ Sbjct: 353 VAKLPWPGEN 362 >UniRef50_Q8UC70 Tyrosine recombinase xerC n=18 Tax=Alphaproteobacteria RepID=XERC_AGRT5 Length = 315 Score = 47.8 bits (112), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 28/164 (17%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R+ + + L+ G+RI EA LTP F P R L R ++ R+VPL Sbjct: 155 RNAAVLSLLYGCGLRISEALGLTPADFP-----PGTRSL-------RITGKGNKTRIVPL 202 Query: 121 TDISYVRQMESWMITTRPRRREPLWAVTDETM-----RNWLKQAVRRAEADGVH--FSIP 173 + ++++ R+ P DE M L+ A+ + E + F +P Sbjct: 203 LAV-VTEAVDTY------RKLCPYALAADEPMFLGARGGKLQPAIIQREMQKLRGAFGLP 255 Query: 174 --VTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 TPH RHS+ H+L + IQ L GH + +VYT V Sbjct: 256 ENATPHALRHSFATHLLAGGGDLRTIQELLGHASLSTTQVYTGV 299 >UniRef50_C2G1Y8 Possible tyrosine recombinase n=3 Tax=Bacteroidetes RepID=C2G1Y8_9SPHI Length = 301 Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/194 (21%), Positives = 86/194 (44%), Gaps = 27/194 (13%) Query: 37 STGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESF-DLDGVRPF 95 S P + EV +L + +H + T+++ G+R+ E L + DG+ Sbjct: 121 SFSKLPKFFSKEEVRNILDNTQNLKHKAILMTIYSCGLRLSELLNLKIKDIKSSDGI--- 177 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRR----EPLWAVTDET 151 +R + + KD R+V L D + + + +P+ E ++ + Sbjct: 178 -------IRIHQSKGNKD--RIVSLPD-KLLATLRHYYQAFKPKEYLFEGERGGKYSERS 227 Query: 152 MRNWLKQAVRRA--EADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSM 209 ++ LK+A+ +A +++G + HT RHSY H++ ++++ L GH + ++ Sbjct: 228 VQLILKKALIKANVQSEG-------SVHTLRHSYATHLIQSGIDIRIVKELLGHENIKTT 280 Query: 210 EVYTRVFALDMAAT 223 +YT + +D T Sbjct: 281 MIYTHITDIDKQKT 294 >UniRef50_Q89XW5 Tyrosine recombinase xerD n=10 Tax=Alphaproteobacteria RepID=XERD_BRAJA Length = 318 Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 29/169 (17%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R + L L+ TG+R+ E L + D VR G+ K+ RLVPL Sbjct: 147 RLYCLLEVLYATGLRVSELVALPRTAAKRDARMIVVR----------GKGNKE--RLVPL 194 Query: 121 TDISYVRQ-MESWMITTRPRRREPLWAVTDE-------------TMRNWLKQAVRRAEAD 166 + S RQ M ++ T + + V T +++ + A A Sbjct: 195 NEAS--RQAMADYLAATEAAKSDKKTGVAASKWLFPSFGESGHLTRQHFARDLKELAVAS 252 Query: 167 GVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 G+ + V+PH RH++ H+L++ +++Q L GH D + ++YT V Sbjct: 253 GLQARL-VSPHVLRHAFASHLLHNGADLRIVQTLLGHTDISTTQIYTHV 300 >UniRef50_B3GAN2 AMDV4_11 n=1 Tax=uncultured virus RepID=B3GAN2_9VIRU Length = 210 Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 37/169 (21%), Positives = 80/169 (47%), Gaps = 14/169 (8%) Query: 60 QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVP 119 +R+ +L L+ TG RI E ++ P +L G +R+ + K + +++ R++P Sbjct: 50 KRYFLLVQFLYRTGARIDEVLIVKPSDINL-GTNS-IRMKTLKQGKDKNGIQREKYRIIP 107 Query: 120 LTD---ISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTP 176 L +Y++ + I+T+ +PL+ ++ + + + K+ D + F V Sbjct: 108 LHSELRDAYMQYLLDMNISTKSE--DPLFPMSRQVVDLYFKKM-----QDKLGFK--VHA 158 Query: 177 HTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLA 225 H FRH++ + + P V+Q GH + +YT++ +D + + Sbjct: 159 HKFRHTFAVKAIMDNVPLNVLQQWLGHSSIFTTSIYTQITGMDTSEFMG 207 >UniRef50_A1KS31 Tyrosine recombinase xerC n=25 Tax=Neisseriaceae RepID=XERC_NEIMF Length = 305 Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 44/165 (26%), Positives = 74/165 (44%), Gaps = 31/165 (18%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R H LF ++ +G+R+ E L + LD +V + +GR + R VPL Sbjct: 141 RDHALFELMYGSGLRVSEIHGLNADDVYLD--EAWVHVTG------KGR----KQRQVPL 188 Query: 121 TDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAE----------ADGVHF 170 T S V +++++ P R+ T RN + + R+ + DG H Sbjct: 189 TGKS-VEALKNYL----PLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRH- 242 Query: 171 SIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 V+PH RHSY H+L + + +Q L GH + ++YT++ Sbjct: 243 ---VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKL 284 >UniRef50_C0VWG3 Site-specific tyrosine recombinase XerD n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VWG3_9CORY Length = 360 Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/167 (24%), Positives = 74/167 (44%), Gaps = 24/167 (14%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R+ L L+ TG RI E L + + +L+ K D+ R+VP+ Sbjct: 194 RNKALLELLYGTGARISEVLSLAVDDITALEETDGILVLTGK---------GDKQRIVPV 244 Query: 121 TDISYVRQ-MESWMITTRPRRREPLWAVTDETMRN---------WLKQAVRRAEADGVHF 170 S+ RQ ++++++ RP+ + A +R W Q V++A + Sbjct: 245 G--SHARQAVDAYLVRGRPQLNKGKSAALFLNVRGGKAMSRQSAW--QVVKQAATE-AGI 299 Query: 171 SIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFA 217 + ++PHT RHS+ H+L + +Q L GH + ++YT + A Sbjct: 300 TKDISPHTLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTHITA 346 >UniRef50_C6I0L0 Phage integrase family protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6I0L0_9BACT Length = 324 Score = 47.4 bits (111), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/172 (23%), Positives = 73/172 (42%), Gaps = 21/172 (12%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R + + + +G+R+ E +T + DL +R++ + + R + Sbjct: 136 RDRAILSFFYASGLRVSELATITADRVDL--ATGALRVMGKGAKER-----------IAF 182 Query: 121 TDISYVRQMESWMITTRP---RRREPLWAVTDET--MRNWLKQAVRR-AEADGVHFSIPV 174 D + ++ T RP R L+ D R L +++ A G+ + P+ Sbjct: 183 LDERTRHLLSDYLTTVRPAFAREHPELFLARDGAPLTRQALWTLIKKHGRAAGI--TSPL 240 Query: 175 TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAV 226 +PH RHS+ H+L + IQ L GH D R+ E+YT V + TL + Sbjct: 241 SPHVLRHSFATHLLEKGLDIRSIQLLLGHEDIRTTEIYTHVSLAHLENTLKL 292 >UniRef50_D1B5G4 Integrase family protein n=2 Tax=Synergistaceae RepID=D1B5G4_THEAS Length = 297 Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 55/198 (27%), Positives = 72/198 (36%), Gaps = 46/198 (23%) Query: 42 PAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV 96 PA L EV LL D R + L+ G+R E LT + DL Sbjct: 113 PAILTEGEVLRLLEATAGDAPGDLRDRAMIELLYGCGLRASELCSLTMKDLDLS------ 166 Query: 97 RILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR--------------PRRRE 142 S VR R D+VR++PL + R + R P RRE Sbjct: 167 ---SGTVRVR---GKGDKVRVLPL--VGETRSALERYLKVRGTHQGPIFQGDRGGPFRRE 218 Query: 143 PLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAG 202 LW + R A R + PH RHS H+L + +Q L G Sbjct: 219 MLWKMIQRRGRQACIAASR------------LHPHILRHSCATHLLRRGMDLRTLQCLLG 266 Query: 203 HRDPRSMEVYTRVFALDM 220 H R+ EVYT F L++ Sbjct: 267 HSSVRTTEVYTH-FDLEL 283 >UniRef50_Q1PZN1 Similar to site-specific tyrosine recombinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZN1_9BACT Length = 298 Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 77/161 (47%), Gaps = 25/161 (15%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R + TL++TGMR+ E ++ D+D V++ RG+ K+ R++P+ Sbjct: 141 RDKAIMETLYSTGMRVSE--LVGINIADIDFHSGIVKV--------RGKGSKE--RILPV 188 Query: 121 TDISYVRQMESWMITTRPRRREPLWA------VTDETMRNWLKQAVRRAEADGVHFSIPV 174 + + + R E L+ +T+ ++ +++ +++A +H + V Sbjct: 189 GN--HALNAIQLYLEKRKADNEALFLNKFHGRLTERSVARMIEKYMKKA---AMH--LRV 241 Query: 175 TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 +PHTFRHS+ H+L + + +Q GH + ++YT V Sbjct: 242 SPHTFRHSFATHLLDNGADLRAVQEFLGHSSLSTTQIYTHV 282 >UniRef50_C6NUW8 Site-specific recombinase XerD n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUW8_9GAMM Length = 308 Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 46/188 (24%), Positives = 79/188 (42%), Gaps = 29/188 (15%) Query: 37 STGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV 96 S G A L AP+ +L R + TL+ TG+R+ E L DL+ Sbjct: 125 SEGEVDALLAAPDRRTVLGL----RDAAMLETLYATGLRVSELVGLLCSQLDLEA----- 175 Query: 97 RILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMITTRPRRREP--LWAVT 148 V G+ K+ RL+P+ +++ Y+R+ ++ ++ P V Sbjct: 176 -----GVVLTLGKGSKE--RLIPVGEVALETLHRYLREARGALL---GHKQSPALFLTVR 225 Query: 149 DETM-RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPR 207 E M R Q ++ A A +PH+ RH++ H+L H + +Q + GH Sbjct: 226 GEAMSRQRFWQTIK-AHATKAGIRSAFSPHSLRHAFATHLLDHGADLRSVQLMLGHAQLN 284 Query: 208 SMEVYTRV 215 + E+YT + Sbjct: 285 TTEIYTHI 292 >UniRef50_C8NZN0 Integrase/recombinase XerD n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZN0_ERYRH Length = 304 Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 72/157 (45%), Gaps = 28/157 (17%) Query: 69 LWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQ 128 L+ G+R+ E L LD + ++RIL G+ K+ R++PL+ I + Sbjct: 138 LYRCGLRVSECVHLEFSQVYLD--QKWLRIL--------GKGNKE--RMIPLS-IDAIDG 184 Query: 129 MESWMITTRPRRREPLWAV--TDETMRNWLKQAVRRAEADGVHFS--------IPVTPHT 178 + ++ RP+ W + T++ N + + R D + S P++ HT Sbjct: 185 LSEYINIIRPQ-----WMIQPTEQIFINAKGKGISRQYIDSMIKSRCKEMGILTPISAHT 239 Query: 179 FRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 RHS+ +L ++IQ L GH+D + ++YT V Sbjct: 240 LRHSFATAILDTGVDLRIIQELLGHQDISTTQIYTHV 276 >UniRef50_C6DY29 Putative integrase/recombinase n=1 Tax=Clostridium botulinum D str. 1873 RepID=C6DY29_CLOBO Length = 272 Score = 47.4 bits (111), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 29/165 (17%) Query: 57 MPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVR 116 M D R TL+ TGMR+ EA L E + D +R IL + + R PK Sbjct: 117 MHDLRAKAFICTLYYTGMRVSEAISLLSEDINKDSIR----ILGKGGKYRDILIPK---- 168 Query: 117 LVPLTDISYVRQMESWMITTRPRRREPLW-----AVTDETMRNWLKQA--VRRAEADGVH 169 L +I + +MI R + L+ ++ T N +K+ + + + D V+ Sbjct: 169 --KLKNI-----WKDYMIV-RENNSDKLFTGREGGISRFTALNIVKKYGHMAKIKKDKVY 220 Query: 170 FSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTR 214 H FRH Y ++++ P I+ LAGH++ + +YTR Sbjct: 221 ------NHAFRHLYCLNLVDRGIPLDAIKDLAGHKNISTTIIYTR 259 >UniRef50_A1TZA5 Phage integrase family protein n=2 Tax=Marinobacter RepID=A1TZA5_MARAV Length = 283 Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 47/178 (26%), Positives = 76/178 (42%), Gaps = 25/178 (14%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P L +V+ ++ + +H L + G+R+ EA L + ++DG R + I Sbjct: 100 PELLTRQDVARIVGATKNPKHRALLLITYGCGLRVSEAVSLQVK--NIDGERHLLHI--- 154 Query: 102 KVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNW------ 155 +G+ KD R+VPLTD+ + + ++ RP LW E + Sbjct: 155 ----HQGKGGKD--RMVPLTDV-LLDVLRAYWCLGRP----VLWLFPSEVLVGQHLTATT 203 Query: 156 LKQAVRRAE-ADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVY 212 ++ R A+ GV + H RH+Y H L H P +Q GH D R+ E Y Sbjct: 204 AQKVYRHAKRLSGVQRRGGI--HALRHAYATHQLEHGVPLNELQKYLGHSDLRTTERY 259 >UniRef50_B2S2Y8 Integrase/recombinase n=4 Tax=Treponema RepID=B2S2Y8_TREPS Length = 306 Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/181 (23%), Positives = 72/181 (39%), Gaps = 21/181 (11%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R LF ++ G+R+ EA L+ +E++ G+ K+ R+ P Sbjct: 133 RDRALFELIYAAGLRVSEAVSLSLSDI----------FFAERLLKVTGKGNKE--RMAPF 180 Query: 121 TD------ISYVRQMESWMITTR-PRRREPLWAV--TDETMRNWLKQAVRRAEADGVHFS 171 + + Y+R+ + + P E AV + R K +R + + Sbjct: 181 GEQACYFLMQYIREARVRFTSAKHPENSEKKGAVFLNRQGGRLSRKGIWKRLQDIEIRSG 240 Query: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 + HTFRHSY H+L +Q L GH D + +VYT V + A F+ + Sbjct: 241 VETHVHTFRHSYATHLLAGGVDLHSVQCLLGHADIATTQVYTHVENGQLEACHRACFSSE 300 Query: 232 G 232 G Sbjct: 301 G 301 >UniRef50_Q11RL1 Site-specific recombinase n=15 Tax=Bacteroidetes RepID=Q11RL1_CYTH3 Length = 299 Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 47/189 (24%), Positives = 81/189 (42%), Gaps = 31/189 (16%) Query: 42 PAYLLAPEVSALLFYM-----PDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV 96 P L PE+ +L + R+ + TL++ G+R+ E L + D FV Sbjct: 111 PDTLSFPEIEQILLAIDLSTPEGMRNRAMLETLYSCGLRVSELTDLKISNLFFDD--GFV 168 Query: 97 RILSEKVRARR---GRPPK-------DEVRLVPLTDISYVRQMESWMITTRPRRREPLWA 146 ++L + + R GR + +EVR + V+ E+++ R R L Sbjct: 169 KVLGKGNKERLVPIGRDARKYIGMYRNEVR----CHLDIVKGAENYVFLNR--RGNKLSR 222 Query: 147 VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDP 206 V T+ L AV+ + V+PHTFRHS+ H++ + +Q + GH Sbjct: 223 VMVFTIIKNL--AVK------IGLKKTVSPHTFRHSFATHLIEGGADLRAVQEMLGHESI 274 Query: 207 RSMEVYTRV 215 + E+YT + Sbjct: 275 TTTEIYTHL 283 >UniRef50_A8MK22 Integrase family protein n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MK22_ALKOO Length = 286 Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 35/144 (24%), Positives = 71/144 (49%), Gaps = 18/144 (12%) Query: 68 TLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD-ISYV 126 T++ TG+R+ EA LT E+ LD + +S G+ KD R++P+++ + Y+ Sbjct: 137 TIFYTGLRVSEALNLTMENVKLD--EKIIYTIS-------GKGDKD--RIIPISNKLYYI 185 Query: 127 RQMESWMITTRPRRREPLWAVTDETMR---NWLKQAVRRAEADGVHFSIPVTPHTFRHSY 183 ++ ++ RP + T +T ++ + + A+ D +++ ++ H RHS+ Sbjct: 186 --LDDYVKNIRPDVESNKFFCTKKTGSLSPQYINRMLHIAK-DSLNWEKNISAHILRHSF 242 Query: 184 IMHMLYHRQPRKVIQALAGHRDPR 207 +++ P +Q L GH D R Sbjct: 243 ASNLILQNAPLPAVQKLLGHSDLR 266 >UniRef50_Q2RYL2 Site-specific recombinase, phage integrase family, truncation n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2RYL2_SALRD Length = 191 Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/195 (22%), Positives = 81/195 (41%), Gaps = 31/195 (15%) Query: 45 LLAPEVSALLFYMPDQRH------HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRI 98 +L E + L P+QR+ ++ + G+R EA L PE DL Sbjct: 10 VLTEEETDRLLSEPNQRYFGPHRDYLYMRVMLKAGLRASEATALRPERIDL--------- 60 Query: 99 LSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPL--------WAVTDE 150 +S K+ R G+ KD + + +++ WM RR+E + + Sbjct: 61 MSGKLMVREGKGAKDRTLWI---GEELLEELQGWM----DRRQEKAPKADYLLPTSKGTQ 113 Query: 151 TMRNWLKQAVRRAEAD-GVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSM 209 + L+++V+R D G+ V+PHT RH++ + +++Q GH D + Sbjct: 114 VATSHLRRSVKRYARDAGIEEVERVSPHTLRHTFATRLYRSAGKIRLVQKALGHSDLSTT 173 Query: 210 EVYTRVFALDMAATL 224 +YT V ++ + Sbjct: 174 MIYTHVVDEELEGAM 188 >UniRef50_D0W8E1 Tyrosine recombinase XerC n=2 Tax=Neisseria RepID=D0W8E1_NEILA Length = 334 Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 43/165 (26%), Positives = 73/165 (44%), Gaps = 31/165 (18%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R H LF ++ +G+R+ E L + LD +V + +GR + R VPL Sbjct: 170 RDHALFELMYGSGLRVSEIHGLNADDVYLD--EAWVHVTG------KGR----KQRQVPL 217 Query: 121 TDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAE----------ADGVHF 170 T S +++++ P R+ T RN + + R+ + DG H Sbjct: 218 TGKS-AEALKNYL----PLRQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAINGDGRH- 271 Query: 171 SIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 V+PH RHSY H+L + + +Q L GH + ++YT++ Sbjct: 272 ---VSPHMMRHSYAGHLLQASRDIRAVQELLGHSSLSTTQIYTKL 313 >UniRef50_Q8U9U6 Tyrosine recombinase xerD n=79 Tax=Alphaproteobacteria RepID=XERD_AGRT5 Length = 331 Score = 47.0 bits (110), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 44/174 (25%), Positives = 71/174 (40%), Gaps = 29/174 (16%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R H+L L+ TGMR+ E L + +G F+ I RG+ KD + L+ Sbjct: 147 RMHLLLELLYATGMRVSELVSLPVKVLRQEG--RFLMI--------RGKGNKDRMVLLSR 196 Query: 121 TDISYVRQMESW--MITTRPRRREPLWAVTDETMRNWL-----------KQAVRRAEAD- 166 I + + E+ ++ + TD WL +Q R D Sbjct: 197 AAIEAMEKYEAGRKALSQEKSKAAASQKKTDTAESPWLFPSNSKEGHLPRQVFARDLKDI 256 Query: 167 ----GVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVF 216 G+ S V+PH RH++ H+L + + +Q L GH D + ++YT V Sbjct: 257 AIRAGLTAS-AVSPHVLRHAFASHLLQNGADLRAVQELLGHSDISTTQIYTHVL 309 >UniRef50_Q0AZB8 Tyrosine recombinase XerD subunit n=2 Tax=Firmicutes RepID=Q0AZB8_SYNWW Length = 296 Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 38/173 (21%), Positives = 77/173 (44%), Gaps = 43/173 (24%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R + ++ TG+R+ E +L+ + DL+ F+R + +GR R++P+ Sbjct: 133 RDRAMLELMYGTGIRVSE--LLSLQVEDLNPTAGFLRCMG------KGRKE----RIIPV 180 Query: 121 TDIS------YVRQMESWMITT------------RPRRREPLWAVTDETMRNWLKQAVRR 162 S Y+ ++ + ++ RP R+ + + + N++++A Sbjct: 181 NQTSIDWVQRYLARVRNSLVKNPLERTLFLNARGRPLSRQGFFKI----LGNYVEKAELE 236 Query: 163 AEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 E VTPHT RHS+ H+L + + +Q + GH D + ++YT + Sbjct: 237 KE---------VTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHL 280 >UniRef50_Q1Q4J1 Similar to site-specific recombinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q4J1_9BACT Length = 295 Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 36/174 (20%), Positives = 72/174 (41%), Gaps = 45/174 (25%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R+ + L+ TG R+ E ++ +L+ +++ +G+ K+ R+VPL Sbjct: 132 RNKAILELLYATGARVSEVATISLNGINLE--YGYIKC--------KGKGSKE--RIVPL 179 Query: 121 TDISYVRQMESWMITTRPR-------------------RREPLWAVTDETMRNWLKQAVR 161 + + ++ ++ T RP+ RRE +W + LK + Sbjct: 180 GKKASI-AIQEYLTTVRPQIKDSQNSHYLFLSRTGRPLRRENIWLIVKNCA---LKAGIT 235 Query: 162 RAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 A ++PH RHS+ H+L + + +Q + GH + ++YT V Sbjct: 236 EA----------ISPHKLRHSFATHLLENGADLRAVQEMLGHVSISTTQIYTHV 279 >UniRef50_Q6MD42 Probable XerD protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MD42_PARUW Length = 291 Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 45/160 (28%), Positives = 75/160 (46%), Gaps = 21/160 (13%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R + TL+ G+R+ E L + +D+D FVR+L G+ K+ R+VP+ Sbjct: 132 RDKAILETLYACGLRVSELCQL--KIYDVDD--TFVRVL--------GKGGKE--RIVPI 177 Query: 121 TD--ISYVRQMESWMITTRPRRREPLWAVTDET---MRNWLKQAVRRAEADGVHFSIPVT 175 I+ + S+ R E L+ +T ++ R + + V+ F ++ Sbjct: 178 GQQAIAAIDGYLSFREGGENSRNEFLF-ITKKSKPLTRALVWKLVKFYARQASIFK-SIS 235 Query: 176 PHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 PHTFRH++ H+L H +VIQ + GH S + YT V Sbjct: 236 PHTFRHTFATHLLDHGADLRVIQDMLGHASINSTDRYTHV 275 >UniRef50_Q0AGB8 Integron integrase n=5 Tax=Bacteria RepID=Q0AGB8_NITEC Length = 329 Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 56/209 (26%), Positives = 85/209 (40%), Gaps = 40/209 (19%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVR---- 97 P L E+ A+L M H ++ L+ TGMR+ E L + D + VR Sbjct: 113 PVVLTHNEIQAVLGRMTGA-HGLMARLLYGTGMRLMECVRLRVKDVDFERAEILVRDGKG 171 Query: 98 --------------ILSEKVRARRGRPPKD---EVRLVPLTDI---SYVRQMESWM---- 133 +L+E +R RR D ++ V L D Y + W+ Sbjct: 172 AKDRVTMLPQSLIPVLNEHIRHRRLLYEDDLAKDMAAVYLPDALERKYPKAATDWIWQYI 231 Query: 134 -----ITTRPRRREPLWAVTDETMRNWLKQAVRRAE-ADGVHFSIPVTPHTFRHSYIMHM 187 + PR DE + L++A+++A A GV + P TPHT RHS+ H+ Sbjct: 232 FVAKSYSVDPRSGVERRHHMDEKL---LQRAMKKAVLAAGV--TKPATPHTLRHSFATHL 286 Query: 188 LYHRQPRKVIQALAGHRDPRSMEVYTRVF 216 L + +Q L GH D + +YT V Sbjct: 287 LQAGYDIRTVQELLGHSDVATTMIYTHVL 315 >UniRef50_C8X5W0 Integrase family protein n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5W0_DESRD Length = 218 Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 47/170 (27%), Positives = 75/170 (44%), Gaps = 17/170 (10%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 RH ++F TL +TG R+GE + + FD++ +R+ + K RG E RLVP+ Sbjct: 55 RHWLIFLTLRHTGARLGEVLQIR-DDFDINTRESEIRVTTLK----RG---TGEKRLVPV 106 Query: 121 TDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEA------DGVHFSIPV 174 + ++ S+++ P R L+++ R +A DG P Sbjct: 107 VP-ELISEIASYLMDY-PEIRGKLFSLDASNFRKRFYDLADQAGMLEEEYMDGRRELFP- 163 Query: 175 TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATL 224 PHT RH+ M +L P +Q L GH + Y R+ D+ TL Sbjct: 164 HPHTLRHTRAMELLSAGVPVTAVQDLLGHSSLLTTAQYLRLSGQDVKNTL 213 >UniRef50_P44630 Tyrosine recombinase xerD n=84 Tax=Proteobacteria RepID=XERD_HAEIN Length = 297 Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 51/195 (26%), Positives = 91/195 (46%), Gaps = 43/195 (22%) Query: 42 PAYLLAPEVSALL----FYMP-DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV 96 P YL +VS LL +P + R + L+ TG+R+ E LT E+ + + V Sbjct: 109 PKYLTEQQVSDLLNTPNVEVPLELRDKAMLELLYATGLRVTELVSLTIENMSVQ--QGVV 166 Query: 97 RILSEKVRARRGRPPKDEVRLVPLTDIS--YVRQMESWMITTRP--------------RR 140 R++ G+ K+ R+VP+ + + +VRQ +M+ RP +R Sbjct: 167 RVI--------GKGNKE--RIVPMGEEAAYWVRQ---FMLYGRPVLLNGQSSDVVFPSQR 213 Query: 141 REPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQAL 200 + + T +T + +K A+ D + ++PH RH++ H++ H +V+Q L Sbjct: 214 AQQM---TRQTFWHRVKHYAILADID----ADALSPHVLRHAFATHLVNHGADLRVVQML 266 Query: 201 AGHRDPRSMEVYTRV 215 GH D + ++YT V Sbjct: 267 LGHTDLSTTQIYTHV 281 >UniRef50_C2D807 Possible integrase/recombinase XerD n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D807_9ACTN Length = 319 Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 56/221 (25%), Positives = 91/221 (41%), Gaps = 44/221 (19%) Query: 2 NNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQR 61 + +I L + P + LLP AP + ALSL+ A FY R Sbjct: 117 DQIIHLLDDPFKPQLLP-APKLTARKALSLKPQAC------------------FY----R 153 Query: 62 HHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLT 121 + L+ G+R+ E L G+ ++S+++ G+ K+ RLVP Sbjct: 154 DKAILEMLYGCGLRVSE----------LCGLNQGDVLVSDELVRVFGKGSKE--RLVPCL 201 Query: 122 DI---SYVRQMESW--MITTRPRRREPLWAVTDETMRNWLKQAV-RRAEADGVHFSIP-V 174 SY W ++ P+ + ++ T + +QAV E G + I + Sbjct: 202 GTALESYQNYCTKWRALLACSPKTTDAVFLSVRGTRIS--RQAVFSLVERYGSYVGIKGL 259 Query: 175 TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 PHT RHSY HML +++Q L GH + ++YT + Sbjct: 260 HPHTLRHSYATHMLEGGMNLRIVQELLGHASISTTQLYTHI 300 >UniRef50_A7HPX0 Integrase family protein n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HPX0_PARL1 Length = 193 Score = 47.0 bits (110), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 50/172 (29%), Positives = 73/172 (42%), Gaps = 28/172 (16%) Query: 50 VSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLD-GVRPFVRILSEKVRARRG 108 V+A P R L T TG RI E LTPE D+D GV ++ E ++ RRG Sbjct: 21 VAAAAGLDPSARTFCLVLTY--TGARISEILALTPERVDVDAGV-----VIIESLKKRRG 73 Query: 109 RPPKDEVRLVP-----LTDISYVRQMESWMITTRPR--RREP-LWAVTDETMRNWLKQAV 160 R +P L D++ + ++ RPR R E +W + T +W+KQA+ Sbjct: 74 ----GVFRSIPVPRALLRDLNEIHELSR----ARPRTTRGENRVWRIGRTTAWSWVKQAM 125 Query: 161 RRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVY 212 A G H P RH++ + P V+Q GH + +Y Sbjct: 126 ESAGIVGSH----AMPKALRHAFGIEATQRNVPLSVVQKWLGHSRLSTTAIY 173 >UniRef50_Q04F60 Tyrosine recombinase XerD subunit n=9 Tax=Lactobacillales RepID=Q04F60_OENOB Length = 302 Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 46/191 (24%), Positives = 83/191 (43%), Gaps = 36/191 (18%) Query: 42 PAYLLAPEVSALLFYMPD------QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 P L A E+ A+L +PD R+ L T++ TG R+ E + + DL Sbjct: 114 PQVLTATEIEAVL-AVPDISTTLGLRNRALLETMYATGFRVSE--ICNLKLADLHDELGL 170 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP----RRREPLWAVTDET 151 + + G+ K R+VP+ ++S + + + +RP + P + D Sbjct: 171 ITTI--------GKGQKQ--RIVPIGEMSLLY-ISKYFKESRPILLKDKESPYLFLNDHG 219 Query: 152 MR-------NWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHR 204 R +K+ +A D ++PHT RHS+ ++L + +++Q L GH Sbjct: 220 HRISRQGIFKLVKEIAIKAGIDK-----DISPHTLRHSFATNLLENGADLRIVQELLGHS 274 Query: 205 DPRSMEVYTRV 215 D + ++YT V Sbjct: 275 DISTTQIYTHV 285 >UniRef50_C9ANV1 Integrase-recombinase n=3 Tax=Lactobacillales RepID=C9ANV1_ENTFC Length = 313 Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 42/181 (23%), Positives = 76/181 (41%), Gaps = 19/181 (10%) Query: 57 MPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVR 116 +QR ++L L +TG+RI E ++ + F + FV G+ KD + Sbjct: 139 FTNQRDYLLLLILVDTGLRINE--VMNLKDFHITNKELFVE---------NGKGKKDRIV 187 Query: 117 ----LVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMR-NWL---KQAVRRAEADGV 168 L+ I Y R S+ + +T E + N++ + ++ + Sbjct: 188 HCSPLIYKEYIKYKRVANSFFEYNEIENIDNYVFLTREGKQYNYILAERAIIKIGNQCKI 247 Query: 169 HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPF 228 SI V+PH+FRH + ++ + IQ L GH ++ EVY R ++ + V F Sbjct: 248 RKSIRVSPHSFRHYFAQKLVRNGTDIYRIQKLLGHASIKTTEVYLRSLNIEDEISETVNF 307 Query: 229 T 229 + Sbjct: 308 S 308 >UniRef50_A9KXF6 Integrase family protein n=1 Tax=Shewanella baltica OS195 RepID=A9KXF6_SHEB9 Length = 210 Score = 46.6 bits (109), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 41/177 (23%), Positives = 79/177 (44%), Gaps = 22/177 (12%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P L +++ALL + + + + A + G+R+ E + + D+DG R +++ Sbjct: 22 PQLLSCQDIAALLCHCQNLKQRAMLALCYGCGLRVSELTHI--KVADIDGQRQLLKVC-- 77 Query: 102 KVRARRGRPPKDEVRLVPLTDISYVRQM------ESWMITTRPRRREPLWAVTDETMRNW 155 +G+ D + ++ T ++ +RQ W+ + + ++ + + T R Sbjct: 78 -----QGKGAYDRLVIISPTLLTLLRQYWRAYHPVEWLFAST--YHDVVYPLHESTFRKA 130 Query: 156 LKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVY 212 L +A R A + P +PH+ RH+Y H L P +QA GH +S E Y Sbjct: 131 LAKAARLAS-----ITKPCSPHSLRHAYATHQLQAGMPLHQLQAQLGHHSIKSTERY 182 >UniRef50_A0L4T4 Tyrosine recombinase XerC subunit n=2 Tax=Bacteria RepID=A0L4T4_MAGSM Length = 335 Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 21/172 (12%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R L L++ G+RI EA L DL G ++R R G+ K R+VPL Sbjct: 153 RDTALLELLYSAGLRISEACNLDRADVDLRG---------GELRVRHGKGGKQ--RMVPL 201 Query: 121 TDISYVRQMESWMIT-TRPR-RREPLWAVTDETMRNWL--KQAVRRAEADGVHFSIP--V 174 + V +E+W+ TR + + +P+ + + L ++ R E +P V Sbjct: 202 GRTA-VAAIEAWLQARTRAKPQLDPMGPIFTGQLGKRLNSREGQRLLEKWRARLDLPESV 260 Query: 175 TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAV 226 TPH RH++ H+L + IQ + GH + + YT LDM A V Sbjct: 261 TPHALRHAFATHLLQAGADLRAIQEMMGHASLSATQKYTH---LDMQALAKV 309 >UniRef50_A9DNU9 Tyrosine type site-specific recombinase n=2 Tax=Bacteria RepID=A9DNU9_9FLAO Length = 428 Score = 46.6 bits (109), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 42/186 (22%), Positives = 74/186 (39%), Gaps = 37/186 (19%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P L E LL +P+ +H + +++ G+R+ E L S L+ Sbjct: 250 PIVLSQKETIQLLKSIPNLKHKTILTVIYSCGLRVSELIDLKLSSIYLE---------EN 300 Query: 102 KVRARRGRPPKDEVRLVPLTDISYVRQM------------ESWMITTRPRRREPLWAVTD 149 K+ G+ KD R V L VR E ++I + + ++ Sbjct: 301 KIHIVAGKGKKD--RYVTLA----VRTKKLIKIYIKKYAPEHYLIEGQKGGKYATSSI-- 352 Query: 150 ETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSM 209 Q + ++ + VTPHT RHS+ H+L + IQ + GH++ ++ Sbjct: 353 --------QKFIKKYSNEAGLTKNVTPHTLRHSFATHLLEKGISLRYIQYILGHQNSKTT 404 Query: 210 EVYTRV 215 E+YT + Sbjct: 405 EIYTHI 410 >UniRef50_A1S1F6 Phage integrase family protein n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1S1F6_THEPD Length = 278 Score = 46.2 bits (108), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 53/182 (29%), Positives = 82/182 (45%), Gaps = 25/182 (13%) Query: 40 ATPAYLLAPEVSALL-FYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRI 98 + P L +V LL P +R ++F L TG+R+ E E V + Sbjct: 99 SVPKALGTEDVRKLLSVASPAEREVIVF--LLKTGLRVSEFVHSRCED---------VLV 147 Query: 99 LSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR-----PRRREPLWAVTDETMR 153 + + R R D+VRLVPLT V ++ T R P +P V+ +++ Sbjct: 148 VGDGRYMLRVRGKGDKVRLVPLT--KDVVEIIKARCTGRAGYIFPSPLDPDKPVSARSIQ 205 Query: 154 NWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYT 213 + + + RRA G+ VTPHT RH+Y +L + + IQ L GH + +VYT Sbjct: 206 HLVSRVARRA---GLQ---RVTPHTLRHTYATLLLNNGVDIRTIQTLLGHAQLTTTQVYT 259 Query: 214 RV 215 +V Sbjct: 260 KV 261 >UniRef50_B8FH24 Tyrosine recombinase XerC n=2 Tax=Desulfobacteraceae RepID=B8FH24_DESAA Length = 315 Score = 46.2 bits (108), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 43/186 (23%), Positives = 78/186 (41%), Gaps = 28/186 (15%) Query: 43 AYLLAPEVSALLFYMPDQ-----RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVR 97 A+L E ALL + D R +F L++TG+R+ E L + G +R Sbjct: 126 AHLTVDEAFALLDSILDDSLAGARDRAMFECLYSTGIRVSELAGLNMGRVNFSG--KTLR 183 Query: 98 ILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWA--------VTD 149 +L G+ K+ + V + +++ + P+ +P +T Sbjct: 184 VL--------GKGDKERIVPVGAKALEHIKAYRDRLAVEGPKNPDPEAVFLNKNGGRLTT 235 Query: 150 ETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSM 209 ++R L++ VR + + P++PH RH++ HML + + +Q L GH + Sbjct: 236 RSIRRILEKIVR-----DMGLNRPLSPHGLRHTFATHMLDNGADLRSVQELLGHASISTT 290 Query: 210 EVYTRV 215 YT V Sbjct: 291 GRYTHV 296 >UniRef50_A9VVA9 Integrase family protein n=12 Tax=Bacillus RepID=A9VVA9_BACWK Length = 386 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/181 (24%), Positives = 78/181 (43%), Gaps = 30/181 (16%) Query: 45 LLAPEVSALLFYMPDQR-HHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKV 103 L EV LL Y D ++ L + L TG+R+ E E + D +R ++ + Sbjct: 194 LSYEEVKQLLHYYKDNEINYALLSVLATTGLRVAEVAHAKWEDLEYDAIRGRYYLIVD-- 251 Query: 104 RARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREP----------LWAVTDETM- 152 D R+V + +++ + ++ R RRR P ++ + T Sbjct: 252 ------TKGDNERIVSIN-----KEIFNRIVAFRIRRRLPVDIGNKNGKTIFQTKNHTAY 300 Query: 153 -RNWLKQAVRRAEAD-GVHF--SIPVTPHTFRHSYIMHML-YHRQPRKVIQALAGHRDPR 207 N+L Q + + D + F +I +TPH FRH Y+ ++ Y VI A GH++ R Sbjct: 301 RENYLSQYISKIIKDTKLSFTENIRITPHFFRHFYVQYLYDYKGLAPHVIAAAVGHKNDR 360 Query: 208 S 208 + Sbjct: 361 T 361 >UniRef50_B1M981 Integrase family protein n=1 Tax=Methylobacterium radiotolerans JCM 2831 RepID=B1M981_METRJ Length = 305 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/152 (30%), Positives = 72/152 (47%), Gaps = 19/152 (12%) Query: 69 LWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPP----KDEVRLVPLTDIS 124 L+ TGMR+GE + DLD R +RI+ + R R+ P KD +R T + Sbjct: 138 LFATGMRVGELVSVRLADIDLD--RDVIRIVGKGNRQRQVVIPNESLKDAIREYARTYHA 195 Query: 125 YVRQMESWMITTRPRRREPLW-AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSY 183 R E ++ REP ++T +R L+ R A+A G+ + VTPH RH+ Sbjct: 196 DDRASERFL-------REPNGRSLTTAAIRTRLR---RLAKAAGLVRT--VTPHMLRHTA 243 Query: 184 IMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 +L + +Q L GHR + ++YT V Sbjct: 244 ATELLEAGVDIRFVQRLLGHRSILTTQIYTHV 275 >UniRef50_C0WCK3 Recombinase n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCK3_9FIRM Length = 298 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 52/187 (27%), Positives = 78/187 (41%), Gaps = 27/187 (14%) Query: 42 PAYLLAPEVSALLFYMPD------QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 P L EV+ L F PD R + ++ TGMR+ E L S Sbjct: 110 PKVLSVDEVNRL-FEAPDLDTPEGYRDRTMLEVMYATGMRVSELLALKVGS--------- 159 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTD--ISYVRQMES-----WMITTRPRRREPLWAVT 148 V + S V A G+ K+ RL+PL I Y+++ S ++ RP L Sbjct: 160 VNLASHYVIAY-GKGAKE--RLIPLGHYAIEYLKEYLSRVRPHFVKENRPCDDLFLTIRG 216 Query: 149 DETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRS 208 R Q ++ VH + +TPH RHS+ HML + + +Q L GH D + Sbjct: 217 TGMTRQRFWQLIKNYGLK-VHIAKSLTPHILRHSFATHMLDNGADLRTVQELLGHSDIST 275 Query: 209 MEVYTRV 215 ++YT + Sbjct: 276 TQIYTHL 282 >UniRef50_A1HN49 Tyrosine recombinase XerC n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HN49_9FIRM Length = 302 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 49/192 (25%), Positives = 89/192 (46%), Gaps = 36/192 (18%) Query: 42 PAYLLAPEVSALLFYMPD----QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVR 97 P +L EV+ LL D +R + L+ TG+R+ E L ++ D+D V FV Sbjct: 113 PVFLDEREVAELLELPADDVLGRRDAAILELLYATGIRVAELTGL--KTSDVDLVSRFVI 170 Query: 98 ILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR-----RREP---LWA--- 146 + G+ K+ R+VP+ + +E ++ RPR R+E L+ Sbjct: 171 VC--------GKGAKE--RIVPIGRTAAA-ALERYLADARPRLYSKWRKEQHQFLFINSK 219 Query: 147 ---VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 +TD ++R + + + + + V+PHT RH++ HML + + +Q + GH Sbjct: 220 GGPLTDRSVRRIIDKYI-----ANLAVAKKVSPHTIRHTFATHMLNNGADLRSVQEMLGH 274 Query: 204 RDPRSMEVYTRV 215 + + ++YT V Sbjct: 275 VNLSTTQLYTHV 286 >UniRef50_C6LJ05 Transposase n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LJ05_9FIRM Length = 399 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 87/186 (46%), Gaps = 30/186 (16%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGR----PPKDE-- 114 +++ F L TGMR+ E LT D + R + + + VR R G+ K E Sbjct: 198 KYYDEFVVLLGTGMRVSEFCGLTKSDLDFENRR--ICVDHQLVRERGGKYYVEKTKTECG 255 Query: 115 VRLVPLTDISYVRQMESWMITTRPRRREPL------WAVTDET--------MRNWLKQAV 160 +R +P+TD Y + +++ + R ++E + + + D+ + N ++ A+ Sbjct: 256 IRFIPMTDDVY-QSLKNILANRRKMKKEIIVDGYSGFILIDKDCHPKVALHIENEMRWAM 314 Query: 161 RRAEADGVHFSIP---VTPHTFRHSYIMHMLYHRQPRKVIQALAGHRD-PRSMEVYTRVF 216 ++ + +H P +TPH FRH++ +M K +Q L G+ D ++ VYT Sbjct: 315 KKYKK--LHPEQPFPHITPHVFRHTFCTNMANKGMDIKTLQYLMGYSDVGVTLNVYTHA- 371 Query: 217 ALDMAA 222 + D AA Sbjct: 372 SYDRAA 377 >UniRef50_Q0F1F3 Tyrosine recombinase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F1F3_9PROT Length = 298 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/186 (28%), Positives = 76/186 (40%), Gaps = 28/186 (15%) Query: 46 LAPEVSALLFY----MPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 L PE +A L D+R L A ++ G+R+ EA L DL +R+L Sbjct: 113 LPPEQTAALMQPTHASADRRDLALLAVMYGAGLRVSEAVGLDLHDIDLHSCE--LRVL-- 168 Query: 102 KVRARRGRPPKDEVRLVPLTDISYVRQM--ESWMITTRPRRREPL----WAVTDETMRNW 155 G+ K + +P T + Q E + R R L +T +++ Sbjct: 169 ------GKGSKQRIVPLPTTAADLLGQWLDERLLGLVRDERAVFLNRFGQRLTARSVQRM 222 Query: 156 LKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 LK + AD I VTPH RHS+ H+L + IQ L GH + E YT Sbjct: 223 LKTRALESGAD-----ISVTPHRLRHSFATHLLAGGVDLRAIQELLGHASLATTERYTH- 276 Query: 216 FALDMA 221 LD+A Sbjct: 277 --LDIA 280 >UniRef50_A6W8N8 Phage integrase family protein n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6W8N8_KINRD Length = 402 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 53/177 (29%), Positives = 76/177 (42%), Gaps = 26/177 (14%) Query: 42 PAYLLAPEVSALLFYM-PDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRIL- 99 P +L E AL M P R +L + TGMRIGEA L DL G P VR++ Sbjct: 196 PVFLTPDEYRALELAMHPIGRPLLLL--MAGTGMRIGEATALQVGDVDLTGRDPVVRVVR 253 Query: 100 --------SEKVRARRGRPPKDEVRLVP-----LTDISYVRQMESWMITTRPRRREPLWA 146 ++++ + R K + L L D++ R + W++TT R W Sbjct: 254 AWKHTDNNTQELGPPKSRKGKRSIALSDAVADYLADLTAGRGPKEWVVTT---SRGDAWR 310 Query: 147 VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 + W AV+R+ G+ S TPH RHS+ ++ VIQA GH Sbjct: 311 ANYWREKYW-HDAVKRS---GIGKS--PTPHDIRHSHASWLIAQGVVLPVIQARLGH 361 >UniRef50_C0W9S4 Tyrosine recombinase xerC n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9S4_9FIRM Length = 302 Score = 46.2 bits (108), Expect = 0.001, Method: Compositional matrix adjust. Identities = 55/204 (26%), Positives = 84/204 (41%), Gaps = 45/204 (22%) Query: 42 PAYLLAPEVSALLFYMPD------QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 P +L E++ LL +PD QR L L++TG R+ E LT DL Sbjct: 112 PVFLEEFEMNHLL-ELPDLSTELGQRDRALLEFLYSTGCRVSELVGLTLTRLDL------ 164 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR-----------------P 138 S + G+ K+ R+VPL +R M +++ R Sbjct: 165 ----SNRYALLLGKGHKE--RIVPLGHPC-IRAMNAYLTGARRVLMEKYEVPSHDFIFVN 217 Query: 139 RRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQ 198 R PL A ++R L + V A V+PHT RH++ H+L H + +Q Sbjct: 218 HRGTPLTA---RSVRRILDRYVEMASIQK-----HVSPHTIRHTFATHLLDHGADLRSVQ 269 Query: 199 ALAGHRDPRSMEVYTRVFALDMAA 222 L GH + ++YT V A +A+ Sbjct: 270 ELLGHASLSTTQIYTHVTADRIAS 293 >UniRef50_A1ASA0 Integron integrase n=8 Tax=Bacteria RepID=A1ASA0_PELPD Length = 468 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/134 (31%), Positives = 61/134 (45%), Gaps = 26/134 (19%) Query: 86 SFDLDGVRPFVRILSEKVRARRGRPPKDEVR--LVPLTDISYVRQMESWMITTRPRRREP 143 S DGV L + V + + PK+ V P +++ V + T RRR Sbjct: 342 SAGYDGV-----FLDDAVEKKYPKAPKEFVHQWFFPQKNLTLVAE-------TGQRRR-- 387 Query: 144 LWAVTDETMRNWLKQAVRRAEADGVHFSIP--VTPHTFRHSYIMHMLYHRQPRKVIQALA 201 W + + ++ L AVRRA+ IP VT HTFRHS+ H+L +VIQ L Sbjct: 388 -WHLHESELQEALYPAVRRAK-------IPKRVTSHTFRHSFATHLLQAGYDIRVIQTLL 439 Query: 202 GHRDPRSMEVYTRV 215 GH ++ +YT Sbjct: 440 GHSSLKTTMIYTHC 453 >UniRef50_B4U830 Integrase family protein n=3 Tax=Aquificaceae RepID=B4U830_HYDS0 Length = 292 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/193 (22%), Positives = 86/193 (44%), Gaps = 16/193 (8%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P L E+ + + D R++ ++ N+G+R+ E L P++F LD + I + Sbjct: 114 PKALSEDELEKIFKAVKDTRYYKIYNLFLNSGIRLIEFEKLRPDNFFLDK-SNILWIRLD 172 Query: 102 KVRARRGRPPKDEVRLVPLTDISYVRQME-SWMITTRPRRREPLWAVTDETMRNWLKQAV 160 +R +P R+ P+ S + +E I E + V ++ + + Sbjct: 173 ANMTKRNKP-----RITPVISFSKDKTIEIGLQIYEWIENFEYNFRVKRGVLQVYTDRLS 227 Query: 161 RRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPR-SMEVYTRVFALD 219 +R D FSI H+FRH+YI +++ + ++++ GH D + +++ Y + F+ Sbjct: 228 KRLNID---FSI----HSFRHTYITNLVNYGFSAEIVKEFVGHSDIKTTIDTYYK-FSQK 279 Query: 220 MAATLAVPFTGDG 232 A L G+ Sbjct: 280 RAQELVNKLFGNN 292 >UniRef50_B1HMD0 Integrase-recombinase protein n=1 Tax=Lysinibacillus sphaericus C3-41 RepID=B1HMD0_LYSSC Length = 277 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/186 (24%), Positives = 71/186 (38%), Gaps = 27/186 (14%) Query: 37 STGATPAYLLAPEVSALLFYMPDQ-RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 S P YL +++ L D R + L+ TG+RI E + E D Sbjct: 98 SEDLLPYYLNKRQLALLQELTKDNLRERAIVEVLYATGVRINELLNIKLEDIKWD----- 152 Query: 96 VRILSEKVRARRGRPPKDEVRLVP------LTDISYVRQMESWMITTRPRRREPLWAVTD 149 + ++ R+G+ KD L L + +VR S + + PR + + Sbjct: 153 ----TRQIWIRKGKGNKDRFVLFSHECALRLKNYLHVRYENSDFLFSSPRGKHISCDLVQ 208 Query: 150 ETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSM 209 R + K+ VTPHT RH++ H+ IQ L GH + S Sbjct: 209 LFFRKYSKE-----------LGFKVTPHTLRHTFAAHLAEKGMEFIYIQDLLGHANINST 257 Query: 210 EVYTRV 215 +YTR+ Sbjct: 258 RIYTRL 263 >UniRef50_A6DNA4 Integron integrase n=2 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DNA4_9BACT Length = 424 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 21/64 (32%), Positives = 32/64 (50%) Query: 160 VRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALD 219 V + + V T HT RHS+ H+L + IQ L GH D + ++YT V +L+ Sbjct: 354 VLKEKCKEVGIKKRCTVHTLRHSFATHLLERGTDLRTIQELLGHEDISTTQIYTHVLSLN 413 Query: 220 MAAT 223 + T Sbjct: 414 QSGT 417 >UniRef50_Q1MRT1 Site-specific recombinase n=3 Tax=Desulfovibrionaceae RepID=Q1MRT1_LAWIP Length = 306 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/165 (21%), Positives = 74/165 (44%), Gaps = 29/165 (17%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R ++ L+ +G+R+ E ++ D D + +++ + + R ++L+ Sbjct: 136 RDKVILELLYASGIRVSE--LIGVHVLDFDQDKGIIKVFGKGGKERYIPLHSSAMKLL-- 191 Query: 121 TDISYVRQM-------ESWMITTRPRR---REPLWAVTDETMRNWLKQAVRRAEADGVHF 170 I YV+++ E ++ R + R+ +W + R L ++ ++ Sbjct: 192 --IHYVQKIRPMFTPIEKFLFLNRSGKGLTRQAIWKIIK---RYALLASINKS------- 239 Query: 171 SIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 ++PHTFRH++ H+L + +Q L GH D + E+YT V Sbjct: 240 ---ISPHTFRHTFATHLLEGGADLRSVQLLLGHVDMSATELYTHV 281 >UniRef50_B8FRH1 Integrase family protein n=3 Tax=Clostridiales RepID=B8FRH1_DESHD Length = 298 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/172 (25%), Positives = 77/172 (44%), Gaps = 25/172 (14%) Query: 48 PEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARR 107 P+ + LL R ++ L+ +G+R+ E L + D+D +R+ R Sbjct: 129 PDCATLL----GARDQVILELLYGSGLRVSELADLNRQ--DIDAGSSLLRV--------R 174 Query: 108 GRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADG 167 G+ K+ R+VPLT+ Y + + R ++E L T + +++RR DG Sbjct: 175 GKGNKE--RIVPLTN--YALEAARQYLEMREDKQEALLLNYQGTRLSV--RSIRRI-LDG 227 Query: 168 VHFSIPVT----PHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 + ++ PH RHS+ H+L + +Q L GH S ++YT + Sbjct: 228 LALEAGLSQHLHPHMLRHSFATHLLDGGADLRSVQELLGHAKLSSTQIYTHL 279 >UniRef50_Q0ACL7 Tyrosine recombinase XerC n=4 Tax=Gammaproteobacteria RepID=Q0ACL7_ALHEH Length = 304 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 47/191 (24%), Positives = 76/191 (39%), Gaps = 38/191 (19%) Query: 42 PAYLLAPEVSALLFYMPDQ-----RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV 96 P L E + LL P+ R L+ ++++G+R+ EA L DL V Sbjct: 111 PGVLSPDEAARLLEGSPEDDPLALRDRALYELIYSSGLRLAEAVGLDLGRLDL--TEGLV 168 Query: 97 RILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDE------ 150 ++ + + RR VP+ + +++W+ P A DE Sbjct: 169 EVVGKGAKTRR----------VPVGGKAR-EALQAWLAV------RPALAGADEPAVFVS 211 Query: 151 ------TMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHR 204 + R+ + R A GV PV PH RHS+ H+L + +Q L GH Sbjct: 212 QRGGRLSARSVQARLARLATLSGV--GRPVHPHMLRHSFASHLLESSGDLRAVQELLGHA 269 Query: 205 DPRSMEVYTRV 215 D + +VYT + Sbjct: 270 DIATTQVYTHL 280 >UniRef50_Q1QE98 Tyrosine recombinase XerC subunit n=3 Tax=Psychrobacter RepID=Q1QE98_PSYCK Length = 349 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/160 (26%), Positives = 75/160 (46%), Gaps = 18/160 (11%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARR---GRPPKDEVR- 116 R +F L+++G+R+GE L DL +R VR+ + + R G D +R Sbjct: 176 RDKAMFELLYSSGLRVGELVALDIVDVDLADLR--VRVTGKGNKTRLVPLGIKAADAIRR 233 Query: 117 LVPLTDISYVRQMESWMITTRPRRREPLWA-VTDETMRNWLKQAVRRAEADGVHFSIPVT 175 +P ++ +V QM+ + + E L ++ ++ LK A RA G+ + + Sbjct: 234 YLPHRNL-WVEQMDQALFIS-----EKLGTRLSTRAVQQRLKVAATRA---GI--AQNMY 282 Query: 176 PHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 PH RH + HML + +Q + GH D + ++YT V Sbjct: 283 PHLLRHCFASHMLSGSGDLRAVQEMLGHSDISTTQIYTHV 322 >UniRef50_D1W8B5 Putative tyrosine recombinase XerD n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W8B5_9BACT Length = 321 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 41/166 (24%), Positives = 78/166 (46%), Gaps = 27/166 (16%) Query: 60 QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVP 119 QR+ + L++ G+R+ E L + LD F+R+ G+ K+ RLVP Sbjct: 137 QRNKAIIEVLFSCGLRVSELVNLQLSNLYLD--EGFIRV--------TGKGNKE--RLVP 184 Query: 120 LTDISYVRQMESW-----MITTRPRRREPLW-----AVTDETMRNWLKQAVRRAEADGVH 169 ++ + ++++ W ++ +P ++ ++ A TM L R+A+ G+ Sbjct: 185 ISPKA-IKELNLWFLDRNLMKIKPGEQDYVFLNRRGAHLTRTM--ILIMLKRQAQEAGIQ 241 Query: 170 FSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 +I +PHT RHS+ +L + IQ + GH + E+YT + Sbjct: 242 KTI--SPHTLRHSFATELLKGGADLRAIQVMLGHESIGTTEIYTHI 285 >UniRef50_P46352 Tyrosine recombinase xerD n=98 Tax=Bacteria RepID=XERD_BACSU Length = 296 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/157 (25%), Positives = 71/157 (45%), Gaps = 27/157 (17%) Query: 69 LWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQ 128 L+ TG+R+ E M+ ++ D+ F+R +GR R+VP+ + + Sbjct: 141 LYATGIRVSE--MIELKTADVHLSMGFIRCFG------KGRKE----RIVPIGEAA-ASA 187 Query: 129 MESWMITTRPRRREPLWAVTDETMRNWLKQAVRR----------AEADGVHFSIPVTPHT 178 +E +M T+ R + V+D N + + R A G+ +TPHT Sbjct: 188 IEEYM--TKARGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEAGI--KKELTPHT 243 Query: 179 FRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 RHS+ H+L + + +Q + GH D + ++YT V Sbjct: 244 LRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHV 280 >UniRef50_C2DP90 Resolvase n=2 Tax=Escherichia coli RepID=C2DP90_ECOLX Length = 71 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 4/64 (6%) Query: 176 PHTFR----HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 PH FR HS+ H+LY K+++ GH S EV R FALD+AA+ V FT D Sbjct: 7 PHQFRDLNRHSFGRHLLYGHVHPKILRVRMGHEKYESTEVNLRFFALDVAASYQVQFTLD 66 Query: 232 GRDA 235 +A Sbjct: 67 TTNA 70 >UniRef50_C7PUZ0 Tyrosine recombinase XerD n=2 Tax=Sphingobacteriales RepID=C7PUZ0_CHIPD Length = 316 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 37/167 (22%), Positives = 73/167 (43%), Gaps = 28/167 (16%) Query: 60 QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVP 119 QR+ + T+++ G+R+ E L D F+R++ + D+ RLVP Sbjct: 151 QRNRAILETMYSCGLRVSEVTNLQISQLHFDA--GFIRVVGKG----------DKERLVP 198 Query: 120 LTD--ISYVRQMESWM---ITTRPRRREPLW------AVTDETMRNWLKQAVRRAEADGV 168 + + Y+ + + + + + + L+ A+T + +K+ A D Sbjct: 199 IGSDAVKYINIYKDEVRVHVPVKKGQEDILFLNRRGSALTRVMIFLVIKELTAAAGIDK- 257 Query: 169 HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 V+PHTFRHS+ H++ + +Q + GH + E+YT + Sbjct: 258 ----QVSPHTFRHSFATHLVEGGADLRAVQEMLGHESITTTEIYTHL 300 >UniRef50_C6JH03 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C6JH03_9FIRM Length = 312 Score = 45.8 bits (107), Expect = 0.001, Method: Compositional matrix adjust. Identities = 39/152 (25%), Positives = 65/152 (42%), Gaps = 19/152 (12%) Query: 69 LWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARR-GRPPKDEV----RLVPLTDI 123 L+ TG+R+ E LT D + + K R + G E+ TDI Sbjct: 151 LFATGVRVSELCSLTLSQIDFTTYKIIINGKGSKERILQIGNEDVKEILSEYYAAFKTDI 210 Query: 124 SYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSY 183 S W R +R ++E++R+ + + ++ A D + +TPH FRHS+ Sbjct: 211 SKT----GWFFINRLHKR-----YSEESVRSMIVKYLKLAAID-----MHITPHMFRHSF 256 Query: 184 IMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 +L + IQ + GH ++ E+YT V Sbjct: 257 ATLLLESDVDIRYIQRMLGHSSIKTTEIYTNV 288 >UniRef50_C5BQK5 Site-specific recombinase, phage integrase family n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BQK5_TERTT Length = 317 Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust. Identities = 48/168 (28%), Positives = 74/168 (44%), Gaps = 27/168 (16%) Query: 69 LWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQ 128 L+ TG+R+GE L G+R L EK RG+ ++ R V +TD S Sbjct: 161 LFTTGVRVGE----------LTGIRLQDIYLQEKFIHIRGKGQRE--RRVFVTDKSIRNL 208 Query: 129 MESWM----ITTRPRRREPLWA-----VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTF 179 +ES++ ITT P + L T + +R WLK + A V TPH + Sbjct: 209 IESYIQLRKITT-PIDQNLLVNSRGRPATSQMVRIWLKNCSKAANLTRV-----ATPHMY 262 Query: 180 RHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVP 227 RHS +L + +Q L GH+ + ++Y V D+ +A+ Sbjct: 263 RHSTATELLNNGVDIIYVQKLLGHQSISTTQIYAHVSHSDVMRNVALA 310 >UniRef50_C5RBD8 Integrase/recombinase n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBD8_WEIPA Length = 308 Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust. Identities = 45/196 (22%), Positives = 80/196 (40%), Gaps = 43/196 (21%) Query: 42 PAYLLAPEVSALL-FYMPDQ-----RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 P Y E++ + M DQ R+H+L L+ TG R+ E +T L V Sbjct: 116 PRYFYQKELTKMFDVVMTDQSALGLRNHLLLEMLYGTGARVSEIANMT-----LQNVDSH 170 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP----------------R 139 R+++ + ++ R+VP + + ++ T RP + Sbjct: 171 ARVVTITGKG-------NKTRIVPFGRYA-ADALAKYLKTGRPVLASKQADTSNKLFLNQ 222 Query: 140 RREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQA 199 R P VT + LKQ +++ + VT H FRH++ +L ++ + +Q Sbjct: 223 RGAP---VTTAGIEYILKQIGKKS-----GLTQEVTAHMFRHTFATDLLNNQADLRTVQQ 274 Query: 200 LAGHRDPRSMEVYTRV 215 L GH + ++YT V Sbjct: 275 LLGHSSLSTTQIYTHV 290 >UniRef50_Q02C57 Phage integrase family protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02C57_SOLUE Length = 303 Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/165 (25%), Positives = 71/165 (43%), Gaps = 15/165 (9%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R +F L+ G+R+ E L E D+D ++R+ RG+ K+ R VPL Sbjct: 144 RDRAIFELLYGCGIRVSELAGLNLE--DIDRTEGWLRV--------RGKGKKE--RQVPL 191 Query: 121 TDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLK--QAVRRAEADGVHFSIPVTPHT 178 + + +E ++ R +P V R + + + A + + PH+ Sbjct: 192 PGQA-AQSLERYLAERPVAREQPAVFVNHRRARLTTRGISGIVKLYATYLSNDPGIHPHS 250 Query: 179 FRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAAT 223 FRH+Y H+L + IQ L GH + + YT+V D+ A Sbjct: 251 FRHAYATHLLADGADLRAIQELLGHARLSTTQKYTQVSLTDLMAV 295 >UniRef50_D0W4M6 Tyrosine recombinase XerD n=1 Tax=Neisseria cinerea ATCC 14685 RepID=D0W4M6_NEICI Length = 308 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 44/164 (26%), Positives = 73/164 (44%), Gaps = 26/164 (15%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R L ++ TG+R+ EA L+ + DLD R + L G+ K R+VP+ Sbjct: 146 RDKALLELMYATGLRVSEAVRLSFGNLDLD--RGCITTL--------GKGNKQ--RIVPM 193 Query: 121 TDISYVRQMESWMITTRP-----RRREPLWAVTDET----MRNWLKQAVRRAEADGVHFS 171 S V +E + RP R + L+ +T W+ ++A H S Sbjct: 194 GRES-VYWVERYYKEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIEHIS 252 Query: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 PH+ RH++ H++ H +V+Q + GH D + ++YT V Sbjct: 253 ----PHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHV 292 >UniRef50_C3U0K2 Putative integron integrase (Fragment) n=2 Tax=uncultured microorganism RepID=C3U0K2_9ZZZZ Length = 294 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 5/67 (7%) Query: 149 DETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRS 208 ++T++ +KQAVRRA P + HTFRH + H+L + +Q L GH D ++ Sbjct: 233 EQTVQRAVKQAVRRAG-----IQQPASCHTFRHCFATHLLEDGYDIRTVQELLGHSDVKT 287 Query: 209 MEVYTRV 215 +YT V Sbjct: 288 TMIYTHV 294 >UniRef50_Q314D3 Integrase/recombinase n=5 Tax=Deltaproteobacteria RepID=Q314D3_DESDG Length = 304 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/197 (23%), Positives = 74/197 (37%), Gaps = 53/197 (26%) Query: 42 PAYLLAPEVSALLFYMPDQ------RHHMLFATLWNTGMRIGEARMLTPESFDLD----- 90 P +L E LL + + R + L TG+R+GE L + DLD Sbjct: 122 PVFLTTAEKKRLLKELKGRTDFSALRDRAMIEVLLGTGIRLGELAALDMDDIDLDAKHLR 181 Query: 91 ----GVRPFVRILSEKVRA----------RRGRPPKDEVRLVPLTDISYVRQMESWMITT 136 G P V+ + +R R GRP +ME+ ++ Sbjct: 182 VRAKGNVPQVKFIKTDLRTLLRRYLAERRRHGRP-----------------EMEALFLSN 224 Query: 137 RPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 R R + + N L +R+A G+ + TPH RH++ H+ V Sbjct: 225 RDGR------LCQRQIANRLAHWLRKA---GIEKEL--TPHGLRHTFATHLYGATNDLLV 273 Query: 197 IQALAGHRDPRSMEVYT 213 +Q GHRD + ++YT Sbjct: 274 VQRALGHRDVSTTQIYT 290 >UniRef50_B8I2V9 Tyrosine recombinase XerD n=5 Tax=Bacteria RepID=B8I2V9_CLOCE Length = 294 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 43/198 (21%), Positives = 79/198 (39%), Gaps = 51/198 (25%) Query: 42 PAYLLAPEVSALL-----FYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLD-GVRPF 95 P L EV LL + R + L+ TG+R+ E L + + D G+ Sbjct: 108 PQILSTQEVELLLDQPKCLDLKGIRDKAMLELLYATGIRVSELISLNLDDINFDLGL--- 164 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMI----------TTRPR 139 ++ +G R +P+ IS Y+ + +++I + Sbjct: 165 -------IKCNKGTRE----RTIPIGSISTAAVHEYLEKSRNFLIQDSQEIALFVNVNGK 213 Query: 140 R--REPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVI 197 R R+ W + ++++ QA + +TPHT RHS+ H+L + + I Sbjct: 214 RLTRQGFWKI----IKHYKNQA---------KINKDITPHTLRHSFAAHLLENGADLRSI 260 Query: 198 QALAGHRDPRSMEVYTRV 215 Q + GH D S ++Y ++ Sbjct: 261 QEMLGHSDISSTQIYAQI 278 >UniRef50_B9XL74 Integrase family protein n=1 Tax=bacterium Ellin514 RepID=B9XL74_9BACT Length = 337 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/175 (26%), Positives = 76/175 (43%), Gaps = 30/175 (17%) Query: 50 VSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGR 109 +SA + Y R + T+++ G+RI E LT + D+D VR+ RG+ Sbjct: 168 ISATVCY----RDVAILETIYSCGLRISELCGLTAQ--DIDWNEQLVRV--------RGK 213 Query: 110 PPKDEVRLVPLTDISYVRQMESW-MITTRPRRREPLW--------AVTDETMRNWLKQAV 160 K+ R VP+ + + W + P P++ A++ ++ LK+ + Sbjct: 214 GKKE--RQVPIGEPALTAIRNYWSTLEQSPGGGSPVFLGETEKAAALSPRVLQQRLKKYL 271 Query: 161 RRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 A D +TPH RHSY HML + +Q L GH + +VYT V Sbjct: 272 ALAGLD-----PSLTPHKLRHSYATHMLDAGADLRSVQELLGHAHLITTQVYTHV 321 >UniRef50_B3XMH5 Integrase family protein n=2 Tax=Lactobacillus RepID=B3XMH5_LACRE Length = 370 Score = 45.4 bits (106), Expect = 0.002, Method: Compositional matrix adjust. Identities = 51/200 (25%), Positives = 89/200 (44%), Gaps = 22/200 (11%) Query: 29 LSLRRMATSTGATPAYLLAPEVSALLFYMPDQR-HHMLFAT-LWNTGMRIGEARMLTPES 86 ++ ++ + + Y E++ +L YM + H+ F L+ TG+R GEA L P Sbjct: 165 VNYKKSSAADKIEEKYFDEEELNKILKYMYKRSPHYGRFCEFLYQTGLRFGEAAALIPND 224 Query: 87 F-DLDGVRPFVRILSEKVRARRGRPPK--DEVRLVPL----TDISYVRQME---SWMITT 136 + DG + V I S V ++ PK R V L +I + + E + I + Sbjct: 225 IIEKDGKQVAV-INSTLVNKKKQPSPKTAKSNRDVTLPKRALEIIHDEEKEANGTQFIFS 283 Query: 137 RPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 R P+ + T+ +WL++A + + T HTFRH++I + P + Sbjct: 284 SGRYGYPM---NNTTLNDWLREAKKELNIQKI-----TTVHTFRHTHISKLAELGVPLYL 335 Query: 197 IQALAGHRDPRSM-EVYTRV 215 IQ GH+D + ++Y V Sbjct: 336 IQNRVGHKDATTTKDIYLHV 355 >UniRef50_Q7UUP7 Probable integrase/recombinase Y4QK n=2 Tax=Rhodopirellula baltica RepID=Q7UUP7_RHOBA Length = 450 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 19/42 (45%), Positives = 26/42 (61%) Query: 174 VTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 VT HTFRH + H+L+ + IQ L GH D ++ E+YT V Sbjct: 380 VTSHTFRHCFATHLLWQGTDIRQIQQLLGHSDVKTTEIYTHV 421 >UniRef50_Q98FX8 Tyrosine recombinase xerD n=2 Tax=Mesorhizobium RepID=XERD_RHILO Length = 305 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 73/166 (43%), Gaps = 26/166 (15%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R H L L+ TG+R+ E L G+ V ++ RG+ K+ R+VPL Sbjct: 140 RLHALVEVLYATGLRVSE----------LVGLPVTVAQRDDRFFMVRGKGDKE--RMVPL 187 Query: 121 TDISYVRQMESWMITTRPRRREPLWAVT-----DETMRNWLKQAVRRAEADGVHF----- 170 + + V M +W+ R P +A + + +L + V + G+ Sbjct: 188 SAKARV-AMRAWLAA---RAGVPAFADSPFLFPAASDSGYLSRQVFARDLKGLAARAGIA 243 Query: 171 SIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVF 216 S ++PH RH++ H+L + + +Q L GH D + ++YT V Sbjct: 244 SAKISPHVLRHAFASHLLQNGADLRAVQQLLGHADISTTQIYTHVL 289 >UniRef50_A5WBQ8 Tyrosine recombinase XerD n=6 Tax=Moraxellaceae RepID=A5WBQ8_PSYWF Length = 312 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 42/189 (22%), Positives = 81/189 (42%), Gaps = 28/189 (14%) Query: 37 STGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV 96 S + L AP+ S L R + L+ G+R+ E L+ E +L+ ++ Sbjct: 126 SENDVESLLSAPDTSTALGL----RDKAMLEVLYACGLRVSELMNLSLEQVNLNA--GWL 179 Query: 97 RILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMIT-TRPRRREPLWAVTD 149 +I + ++ RLVPL + + Y+ ++ + + ++ T Sbjct: 180 QITGKG----------NKTRLVPLGEYASDALDDYLTHARGELVAHLKSGNCQAVFLTTQ 229 Query: 150 E---TMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDP 206 T +N+ + A+ G+ + +PHT RH++ H+L H + +Q L GH D Sbjct: 230 GGYMTRQNFWYMIKKYAKQAGIQSDL--SPHTLRHAFATHLLNHGADLRSVQLLLGHSDL 287 Query: 207 RSMEVYTRV 215 + ++YT V Sbjct: 288 STTQIYTHV 296 >UniRef50_Q93C64 Tyrosine recombinase xerD n=50 Tax=Bacilli RepID=XERD_LACCA Length = 293 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 47/186 (25%), Positives = 81/186 (43%), Gaps = 26/186 (13%) Query: 42 PAYLLAPEVSALLFYMPDQ------RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 PA L E+ AL+ PD R +F ++ TG+R+ E L LD + Sbjct: 106 PATLSGTEIDALM-AKPDTTKPLGLRDRAIFELMYATGLRVSEVVGLR-----LDQLHLA 159 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR---RREPLWAVTDETM 152 + +L + D+ RLVP++ + + ++ +RPR ++P + Sbjct: 160 MNLLQVTGKG-------DKERLVPISPQA-ADWVNRYLQESRPRLIKHQQPKAVFVNFHG 211 Query: 153 RNWLKQAV---RRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSM 209 +Q + +A V VTPHT RHS+ +L + +V+Q L GH D + Sbjct: 212 HALTRQVIWKNLKAYIASVGIEKDVTPHTLRHSFATRLLENGADLRVVQELLGHSDISTT 271 Query: 210 EVYTRV 215 ++YT + Sbjct: 272 QIYTHL 277 >UniRef50_Q6ALR8 Probable site-specific recombinase (XerD-like) n=1 Tax=Desulfotalea psychrophila RepID=Q6ALR8_DESPS Length = 345 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%) Query: 152 MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEV 211 M + L++A++ A + + VT HT RHSY H+L ++Q L GH+D ++ E+ Sbjct: 263 MESGLQKAIKTATSR-TNIEKHVTCHTLRHSYATHLLEQGTHLHLLQKLLGHKDVKTTEI 321 Query: 212 YTRV 215 YT + Sbjct: 322 YTHL 325 >UniRef50_Q1MVX1 Integron integrase (Fragment) n=14 Tax=uncultured bacterium RepID=Q1MVX1_9BACT Length = 238 Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust. Identities = 32/82 (39%), Positives = 43/82 (52%), Gaps = 8/82 (9%) Query: 135 TTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPR 194 TR RRR L ET+ +++ VRR+ + S VT HTFRHS+ H+L Sbjct: 165 ATRKRRRHHL----HETV---IQKEVRRS-VQALKMSKRVTCHTFRHSFATHLLESGSDI 216 Query: 195 KVIQALAGHRDPRSMEVYTRVF 216 + IQ L GH D R+ +YT V Sbjct: 217 RTIQELLGHADVRTTMIYTHVL 238 >UniRef50_UPI000196CAFB hypothetical protein CATMIT_02473 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196CAFB Length = 297 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 48/172 (27%), Positives = 76/172 (44%), Gaps = 40/172 (23%) Query: 60 QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVP 119 +R+ + L NTGMRI E ++ E D++ V ++ G+ K+ RL+P Sbjct: 127 KRNKAMMLLLINTGMRISE--LVHLEINDINHSVSNVSVV--------GKGNKE--RLIP 174 Query: 120 LTD--ISYV------------RQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEA 165 L + SYV ++ W+ RR +T E N L++ V A Sbjct: 175 LDEETCSYVYSYMQNDRSFFNKKNNQWLFMMNDGRR-----MTRENFYNILQKLVIGA-- 227 Query: 166 DGV--HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 GV HF TPH RH++ +L + + IQ + GH+D + +YT V Sbjct: 228 -GVRDHF----TPHMLRHTFATTLLENHCDLRSIQVMLGHQDISTTTIYTHV 274 >UniRef50_B1HMD2 Putative uncharacterized protein n=1 Tax=Lysinibacillus sphaericus C3-41 RepID=B1HMD2_LYSSC Length = 280 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/182 (22%), Positives = 81/182 (44%), Gaps = 26/182 (14%) Query: 42 PAYLLAPEVSALLFYMPDQRHH-MLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILS 100 P YL +++ LL ++ ++ + + L+ TG+RI E + E D++ ++IL Sbjct: 106 PRYLSKKQLTCLLEHVCERLYERTIIEVLYATGVRISELVKIKKE--DINWSERSIQILE 163 Query: 101 EKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAV 160 K R R + L ++ + +E+++ +R + ++ ET + + Sbjct: 164 GK--GNRSR--------IVLFNLDCAQHLETYL-NSRTDKLPYVFVDKKET------RMI 206 Query: 161 RRAEADGV------HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTR 214 R E + + VTPH RH++ H+ P + IQ L GH S ++Y R Sbjct: 207 RSREINTLFQFYSKQLGFRVTPHMLRHTFAAHLAERGMPLECIQQLLGHETTHSTQLYAR 266 Query: 215 VF 216 ++ Sbjct: 267 LY 268 >UniRef50_UPI0001BCC5A1 phage integrase n=1 Tax=Aeromicrobium marinum DSM 15272 RepID=UPI0001BCC5A1 Length = 416 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 57/190 (30%), Positives = 83/190 (43%), Gaps = 23/190 (12%) Query: 44 YLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKV 103 YL ++ AL D R +L TL TG+R GEA L DL G R VR +V Sbjct: 176 YLTPRQLEALAGAAGDGR--VLILTLGYTGLRWGEASALRVSDVDLLGRRIHVRRSISEV 233 Query: 104 RARR--GRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDET---MRNWLKQ 158 R G R VP+T S ++E+ + P +PL+A +RN+ ++ Sbjct: 234 RGSLVFGTTKSHATRTVPITK-SLAVELEALIDGRGP--DDPLFAAPGGGWLHLRNFRRR 290 Query: 159 ----AVRRAEADGVHFSIP-VTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPR-SMEVY 212 AV RA +P +TPH RH+ + K +Q + GH +++VY Sbjct: 291 DFDPAVARA-------GLPHITPHGLRHTAASIAVSAGANVKAVQKMLGHASAAMTLDVY 343 Query: 213 TRVFALDMAA 222 +F DM A Sbjct: 344 ADLFDEDMDA 353 >UniRef50_Q0A7P4 Integron integrase n=318 Tax=root RepID=Q0A7P4_ALHEH Length = 462 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 57/215 (26%), Positives = 87/215 (40%), Gaps = 50/215 (23%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P L EV ALL M HH+L + L+ +GMR+ EA L + D + Sbjct: 246 PVVLSRNEVKALLSEMHGV-HHLLASLLYGSGMRVMEALRLRVKDIDFE---------RR 295 Query: 102 KVRARRGRPPKDEVRLVPLTDIS----YVRQMES-------------------------- 131 + R G+ KD V +P + I+ ++RQ+++ Sbjct: 296 AITVRSGKGDKDRVVPLPESTIAPLQNHLRQVKAIHEGDLADGYGEASLPHALARKYRNA 355 Query: 132 -----WMITTRPRRREPLWAVTDETMRNWLKQ-AVRRAEADGVHFS-IP--VTPHTFRHS 182 W P R + + R+ L + AV+RA V S IP + HT RHS Sbjct: 356 GKEWHWQYVF-PSARVAVDPRSGAIRRHHLHETAVQRAVKRAVRASRIPKQASCHTLRHS 414 Query: 183 YIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFA 217 + H+L Q + +Q L GH D + +YT V + Sbjct: 415 FATHLLERGQDIRTVQELLGHADVSTTMIYTHVMS 449 >UniRef50_B1GYR5 Tyrosine recombinase XerC n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYR5_UNCTG Length = 314 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 46/183 (25%), Positives = 84/183 (45%), Gaps = 24/183 (13%) Query: 42 PAYLLAPEVSALLFYMPDQ--RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRIL 99 P++L E+ LL +PD R + ++ G+RI E S DL + ++ Sbjct: 130 PSFLTENEMQMLL-NLPDLKPRDRAMIELFYSCGLRIEEL-----VSLDLKNIDFISNVV 183 Query: 100 SEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR-----REPLWAVTDETMRN 154 + V +R + R+VP+ DI + ++ ++ R R P++ ++D R Sbjct: 184 T--VTGKRNKE-----RIVPVGDIC-LHAIKDYINKRRNLGLPYDIRSPVF-LSDRAKRL 234 Query: 155 WLKQAVRRAEADGVH--FSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVY 212 + A R V F+ V+PHT RH++ H+L + +Q + GH++ S ++Y Sbjct: 235 GQRTARRILHRYFVKAGFTKKVSPHTLRHTFATHILDRGCDLRSVQEMLGHKNLSSTQIY 294 Query: 213 TRV 215 T V Sbjct: 295 THV 297 >UniRef50_A5D2W6 Tyrosine recombinase xerC n=5 Tax=Clostridia RepID=XERC_PELTS Length = 306 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/168 (26%), Positives = 71/168 (42%), Gaps = 29/168 (17%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R L TL+ G+RI E +L D+ ++R+ ++ R R LVPL Sbjct: 137 RDRALLETLYAGGLRISELVLLDLGDLDISS--GYIRVTGKRARER----------LVPL 184 Query: 121 TDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVR--RAEADG----------- 167 ++ V +++++ RPR + + + N L R R A G Sbjct: 185 GSMA-VEALQAYLAKARPR---LMANSVAKKINNALFLNCRGERLSARGIRKILDKYVEK 240 Query: 168 VHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 V ++PHT RHS+ H+L + +Q L GH S +VYT V Sbjct: 241 VSLERKISPHTLRHSFATHLLNAGADLRSVQELMGHVRLSSTQVYTHV 288 >UniRef50_Q49890 Tyrosine recombinase xerD n=54 Tax=Actinobacteria (class) RepID=XERD_MYCLE Length = 316 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 80/193 (41%), Gaps = 32/193 (16%) Query: 42 PAYLLAPEVSALLFYMPDQ---------RHHMLFATLWNTGMRIGEARMLTPESFDLDGV 92 P L EV ALL + + R+ L L++TG RI EA D+D V Sbjct: 120 PKSLTVDEVLALLESVGGESRADGPLVLRNRALLELLYSTGSRISEA-----VGLDVDDV 174 Query: 93 RPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR--RREPLWAVTDE 150 R + +G+ K RLVP+ + V+ ++++++ R RR P T Sbjct: 175 DTQARTV-----LLQGKGGKQ--RLVPVGRPA-VQALDAYLVRGRSDLARRGPGMLATPA 226 Query: 151 TMRNWLKQAVRRAEA--------DGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAG 202 N + R A + + V+PH RHS+ H+L +V+Q L G Sbjct: 227 IFLNARGGRLSRQSAWQVLQDAAEHAGITSGVSPHMLRHSFATHLLEGGADIRVVQELMG 286 Query: 203 HRDPRSMEVYTRV 215 H + ++YT V Sbjct: 287 HASVTTTQIYTLV 299 >UniRef50_B8FPN6 Tyrosine recombinase XerD n=2 Tax=Desulfitobacterium hafniense RepID=B8FPN6_DESHD Length = 322 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 29/166 (17%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R+ + L+ G+R+ E L G++ I + RG+ K+ R+VP+ Sbjct: 158 RNMAMIEVLYGCGLRVSE----------LVGLKVSDIIFETRTLRCRGKGNKE--RIVPI 205 Query: 121 TDISYVRQMESWMITTRPRRR-----EPLW------AVTDETMRNWLKQAVRRAEADGVH 169 + + + +++++ R R R E L+ A+T + + + LK+ A+ GV Sbjct: 206 GEYA-LEVLQNYLEHDRERLRGKHKTEVLFLNSRGTALTRQGIWDILKKW---AQTHGVQ 261 Query: 170 FSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 +I PH FRHS+ H+L H + +Q + GH D + ++YT + Sbjct: 262 ENI--YPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYTHL 305 >UniRef50_A5INK7 Phage integrase family protein n=13 Tax=Thermotogaceae RepID=A5INK7_THEP1 Length = 256 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 39/174 (22%), Positives = 76/174 (43%), Gaps = 25/174 (14%) Query: 42 PAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 P + E+ ++ + + +F L NTGMR+ E L+ + L+ +RI Sbjct: 97 PKAVELEEIKRIIEACDHRMYKAIFKVLANTGMRVSELVGLSIQDISLNDT-ARIRI--- 152 Query: 102 KVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVR 161 +G+ K+ + I+ R + ++ + ++P ++R+ + R Sbjct: 153 -----KGKGNKERI-------INVSRDLVEELVRSGFFEKKP-------SVRSIQRAVKR 193 Query: 162 RAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 A G+ VTPH FRHS+ + ++ P IQAL GH + + +Y ++ Sbjct: 194 YARKAGIRKK--VTPHIFRHSFAVALIERGIPLNKIQALLGHANISTTSIYLKI 245 >UniRef50_A6G8N0 Phage integrase n=2 Tax=Plesiocystis pacifica SIR-1 RepID=A6G8N0_9DELT Length = 369 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 45/135 (33%), Positives = 64/135 (47%), Gaps = 16/135 (11%) Query: 78 EARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLT-DISYVRQMESWMITT 136 E R L DL+G R VR+ A G P + R VPL DI E+ + Sbjct: 220 ELRGLRWRDVDLEGGR--VRVEQAVTNAGIGTPKSGKGRSVPLARDIR-----EALAVRR 272 Query: 137 RPRRREP---LWAVTDET--MRNWLKQAVRRA-EADGVHFSIPVTPHTFRHSYIMHMLYH 190 PRRR+P ++A +D N + +A+ RA EA G+ I TPH RH++ H + Sbjct: 273 GPRRRKPDTLVFAQSDGRPLAHNTIGRALTRAAEAAGIERRI--TPHVLRHTFASHAVLA 330 Query: 191 RQPRKVIQALAGHRD 205 P +++Q GH D Sbjct: 331 GVPIRIVQGWLGHAD 345 >UniRef50_Q8KET0 Tyrosine recombinase xerD n=12 Tax=Chlorobiaceae RepID=XERD_CHLTE Length = 304 Score = 44.7 bits (104), Expect = 0.003, Method: Compositional matrix adjust. Identities = 41/160 (25%), Positives = 66/160 (41%), Gaps = 33/160 (20%) Query: 69 LWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQ 128 L+ TG+R+ E L+ + +D FVR+ G+ K+ RLVP+ + Sbjct: 149 LYATGVRVSELLGLSRLNLHMDD--GFVRVF--------GKGSKE--RLVPVGQTAI--- 193 Query: 129 MESWMITTRPRRREPLWAVTDET-------------MRNWLKQAVRRAEADGVHFSIPVT 175 SWM R + + T M W + R A P++ Sbjct: 194 --SWMKRYLDELRPGMMSATSHDTIFLNSRGGPLSRMAAW---NIVREHAVIAGIEKPIS 248 Query: 176 PHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 PHTFRHS+ H+L +V+Q + GH + ++YT + Sbjct: 249 PHTFRHSFATHLLEGGADLRVVQEMLGHSSIIATQIYTHI 288 >UniRef50_D0BKQ9 Tyrosine recombinase XerD n=2 Tax=Firmicutes RepID=D0BKQ9_9LACT Length = 297 Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust. Identities = 58/225 (25%), Positives = 96/225 (42%), Gaps = 48/225 (21%) Query: 2 NNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQR 61 N V PL+ P++ +LP A VD T + L TST V L R Sbjct: 92 NPVQPLK-VPKKSKMLPKALTVDEVTQV-LNSCDTST-----------VLGL-------R 131 Query: 62 HHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLT 121 + L+ TGMR+ E ++T + DL F++ + G+ K R++P+ Sbjct: 132 DKAMLELLYATGMRVSE--LITLKLSDLHLELGFLQTI--------GKGNKQ--RIIPIG 179 Query: 122 D--ISYVRQMESWMITTRPRRREPLW---------AVTDETMRNWLKQAVRRAEADGVHF 170 ++V+ ++ + P+ T + LK+ V+ A GVH Sbjct: 180 QAATNWVQHYLTYARVVLEQESNPVEYLFLNHRGNGFTRQGFWKNLKKIVQEA---GVH- 235 Query: 171 SIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 V+PHT RHS+ H+L +++Q L GH D + ++YT + Sbjct: 236 -KDVSPHTLRHSFATHILEAGADLRIVQELLGHSDISTTQIYTHL 279 >UniRef50_Q8PIJ3 Integrase/recombinase n=1 Tax=Xanthomonas axonopodis pv. citri RepID=Q8PIJ3_XANAC Length = 439 Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust. Identities = 44/140 (31%), Positives = 64/140 (45%), Gaps = 20/140 (14%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV---RILSEKVRARRGRP-PKDEVR 116 R+ ++F L +TGMR GE L + FDL G P V R +K +RR +P K + R Sbjct: 218 RNAIIFGLLRHTGMRRGELLSLRLDQFDL-GHEPHVWVRRNQDDKHDSRRYQPVAKTKER 276 Query: 117 LVPLTDISYVRQMESWMITTRPR----RREPLWAVTDETMRNWLK---------QAVRRA 163 +PL ++ Q++ +M+ RP+ RR P V+ W K Q R Sbjct: 277 PLPLPEM-LANQIDRYMLKVRPKIGPARRHPYLLVSHRKGSTWGKPLSASALSSQIFSRM 335 Query: 164 EADGVHFSIPVTPHTFRHSY 183 A F + PH FRH + Sbjct: 336 RAVDSAFE-AIHPHAFRHHF 354 >UniRef50_Q2J882 Tyrosine recombinase XerD n=15 Tax=Bacteria RepID=Q2J882_FRASC Length = 443 Score = 44.3 bits (103), Expect = 0.003, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 70/173 (40%), Gaps = 44/173 (25%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R L L+ TG RI EA L + DL+ S ++ + GR R+VPL Sbjct: 250 RATALLELLYGTGARISEAVGLDVDDLDLEAA-------SVRLHGKGGRD-----RIVPL 297 Query: 121 TDIS------YVRQMESWMITTRP-------RR-----REPLWAVTDETMRNWLKQAVRR 162 + Y+R ++ R RR R+ W+V L+ A Sbjct: 298 GRYAIAAVADYLRVGRPTLVAPRSGPAVFLSRRGNRLSRQSAWSV--------LRTAALA 349 Query: 163 AEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 A +GV +PH RHS+ H+L +V+Q L GH + ++YT V Sbjct: 350 AGVEGV------SPHVLRHSFATHLLDGGADVRVVQELLGHASVSTTQIYTLV 396 >UniRef50_A6DI20 Phage integrase n=5 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DI20_9BACT Length = 298 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/188 (23%), Positives = 77/188 (40%), Gaps = 24/188 (12%) Query: 40 ATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRIL 99 + P L E +L ++ R+ +++ G+RI E + D +R VR Sbjct: 100 SLPDILSQDETLLILSHLEKARYRTCLTAIYSMGLRISEGVRIQTGDICKDRMRLHVR-- 157 Query: 100 SEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWA--------VTDET 151 + KD RLVPL ++Y + W++ P P +A T Sbjct: 158 -------NSKGYKD--RLVPLPQVTYQMLRDYWVMHRNPLLLFPRYAGKSRSNSKTTLHM 208 Query: 152 MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPR----KVIQALAGHRDPR 207 + ++ A + A AD + V+ H+ RHSY H++ +VIQ + GH P Sbjct: 209 DKGGVQSAFKAALADS-GLAKQVSVHSLRHSYATHLVEAGVEAGVNLRVIQEILGHSSPA 267 Query: 208 SMEVYTRV 215 + +Y+ + Sbjct: 268 TTAIYSHL 275 >UniRef50_A6KYQ9 Integrase n=60 Tax=Bacteria RepID=A6KYQ9_BACV8 Length = 313 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 39/168 (23%), Positives = 75/168 (44%), Gaps = 31/168 (18%) Query: 60 QRHHMLFATLWNTGMRIGE-ARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLV 118 QR+ + TL++ G+R+ E + E + +G F+++ G+ K RLV Sbjct: 136 QRNRAILETLYSCGLRVSELCNLKLSELYFEEG---FIKV--------EGKGSKQ--RLV 182 Query: 119 PLT--DISYVRQM--ESWMITTRPRRREPLWAVTDETMRNWLKQAVR-------RAEADG 167 P++ I +R + ++ +P + ++ + N+ K R + A Sbjct: 183 PISPRAIKEIRLYFTDRNLMKIKPGFEDFVF------ISNFGKNISRIMVFHIIKELAAR 236 Query: 168 VHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 + ++PHTFRHS+ H+L + IQ + GH + E+YT + Sbjct: 237 IGLKKKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHI 284 >UniRef50_C5D8C9 Integrase family protein n=2 Tax=Firmicutes RepID=C5D8C9_GEOSW Length = 292 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 44/197 (22%), Positives = 83/197 (42%), Gaps = 29/197 (14%) Query: 21 PGVDFATALSLRR----MATSTGATPAYLLAPEVSALLFYMPDQ-----RHHMLFATLWN 71 G+ + + L+R +A + L EV LLFY+ D+ R+ ++ L Sbjct: 86 KGIVSESYIQLKRDRVQIAAGSEHVVTALSEEEVEKLLFYLEDRTKVSLRNKLIAYLLLY 145 Query: 72 TGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDI-----SYV 126 TG+R+ E ++ + D+D + + I + + R +D V+L+ I S Sbjct: 146 TGVRVSE--LVNIKLTDIDVLTATLMIRGKGGKVREISLRQDLVQLIKEYQIGERQESRF 203 Query: 127 RQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMH 186 R+ E +++ R ++ + + +RNWL + I + PH FRH++ Sbjct: 204 RESEYLLVSQRSKK------MHRDAVRNWLANISK-------DIGIKLHPHLFRHTFATR 250 Query: 187 MLYHRQPRKVIQALAGH 203 +L + L GH Sbjct: 251 LLRKGVDLTTVSKLTGH 267 >UniRef50_UPI0001C37BCF phage-specific recombinase/integrase XerD n=1 Tax=Ruminococcus flavefaciens FD-1 RepID=UPI0001C37BCF Length = 342 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 49/220 (22%), Positives = 89/220 (40%), Gaps = 33/220 (15%) Query: 10 SPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ------RHH 63 SPE + L +D+ S A YL ++ LL PD R Sbjct: 104 SPENMDNLQSVIQIDYKK---------SKKAIVPYLTEKQMK-LLLAQPDGNTWQLFRDK 153 Query: 64 MLFATLWNTG--------MRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEV 115 ++ A L++TG +RI + R+ +P L G VR +V G ++ Sbjct: 154 VMLAVLYDTGARVQELCDLRIKDVRLESPAVITLTGKGNKVR----QVPIMSGTQKLLKI 209 Query: 116 RLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVT 175 L + + + ++ + + ++ W V+ + + + V A+ G+ P+T Sbjct: 210 YLEKHKGNAGISRGDNPLFVNQRGQKLSRWGVS-----HIIDKYVDMAKEKGLDVDFPIT 264 Query: 176 PHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 H FRHS +HM++ I+ GH D + E+Y ++ Sbjct: 265 AHVFRHSKAVHMVHAGINLIYIRDFLGHVDWATTEIYAKI 304 >UniRef50_D0AM75 Phage integrase n=14 Tax=Bacilli RepID=D0AM75_ENTFC Length = 301 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 35/169 (20%), Positives = 68/169 (40%), Gaps = 29/169 (17%) Query: 59 DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLV 118 D R+ L L+ +G+R+ E L+ D D +V G+ K+ R Sbjct: 134 DLRNRALLEVLYGSGIRLSECSSLSVSDIDFDS----------EVMLIHGKGNKE--RYA 181 Query: 119 PLTDIS------YVRQMESWMITTRPRRREPLWA------VTDETMRNWLKQAVRRAEAD 166 PL + Y R+ ++T + ++ +T + L Q ++++ D Sbjct: 182 PLGSFAQDALQEYFREGRQVLMTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLD 241 Query: 167 GVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 + PH RH++ H+L + + +Q L GH + + ++Y V Sbjct: 242 S-----DIHPHMLRHTFATHLLNNGADLRTVQELLGHANLSTTQIYAHV 285 >UniRef50_B5Y8G2 Tyrosine recombinase XerC n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8G2_COPPD Length = 286 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 84/206 (40%), Gaps = 33/206 (16%) Query: 17 LPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ-----RHHMLFATLWN 71 +PI F T L + P +L ++S LL +P+ R L L Sbjct: 87 MPIMELSGFKTGLKV----------PRVVLRDDISKLL-ELPENTPIELRDKALVWFLLG 135 Query: 72 TGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMES 131 TG RI EA L E D+D ++L + + R P ++L+ R +E Sbjct: 136 TGTRISEALSLKVE--DIDFRTASCQVLGKGNKKRTVYIPSKALKLLK-------RYIEV 186 Query: 132 WMITTRPR-RREPLWAVTDETMRNWLKQAVRR-AEADGVHFSIPVTPHTFRHSYIMHMLY 189 + +T P +TD R L + ++ D VH PHT RH++ ++L Sbjct: 187 FNLTEGPLFLNMQGQGLTDRGARYILHKISKKYGLRDLVH------PHTLRHTFATNLLE 240 Query: 190 HRQPRKVIQALAGHRDPRSMEVYTRV 215 + IQ L GH RS ++YT V Sbjct: 241 EGANLREIQELLGHSSLRSTQIYTHV 266 >UniRef50_Q0EWI0 Tyrosine recombinase XerD n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWI0_9PROT Length = 299 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 40/160 (25%), Positives = 75/160 (46%), Gaps = 21/160 (13%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R + L+ TG+R+ E LT ++D +R++ + D+ RL+P Sbjct: 138 RDRCMLELLYATGVRVSELVSLTRGQVEMDA--GLLRVIGKG----------DKERLIPF 185 Query: 121 TDISYVRQMESWMITTRPRRREP-LWAVTDE---TMRNWLKQAVRRAEADGVHFSIPV-T 175 + + + ++ W++ + P L+A T +N+ + R A G+ +P+ + Sbjct: 186 GEEA-GQWLQQWLLLRPAKPASPYLFAGRGGHAMTRQNFWLRIKRYATMAGI---MPLPS 241 Query: 176 PHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 PHT RH++ H+L H + +Q L GH + E+YT V Sbjct: 242 PHTLRHAFATHLLNHGADLRAVQMLLGHAHVTTTEIYTHV 281 >UniRef50_A3J7W5 Integrase n=1 Tax=Marinobacter sp. ELB17 RepID=A3J7W5_9ALTE Length = 319 Score = 44.3 bits (103), Expect = 0.004, Method: Compositional matrix adjust. Identities = 41/198 (20%), Positives = 81/198 (40%), Gaps = 48/198 (24%) Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 H++ + ++ +G+R+ EA L + D + + + R G+ KD L+P T Sbjct: 126 HIIASLMYGSGLRVTEACRLRIKDLDFN---------QQVITVRDGKGAKDRTTLLPGTL 176 Query: 123 ISYVRQ-----MESWMITTRPRRREPL--------------------W-----AVTDETM 152 I+ ++ ++W P+ + P+ W +++ + + Sbjct: 177 IAELKSHADNICKAWK-QKDPQFQHPVSLPHALSRKYSNAGHSLEWQWLFSSPSLSSDNL 235 Query: 153 RNWLKQ-----AVRRAEADGVHFSI---PVTPHTFRHSYIMHMLYHRQPRKVIQALAGHR 204 N + +V+R+ + V + P HTFRHS+ +L + +Q L GH Sbjct: 236 GNVARHHRHITSVQRSVRNAVKQACIGKPAGCHTFRHSFATELLKRGNDIRTVQDLLGHA 295 Query: 205 DPRSMEVYTRVFALDMAA 222 D R+ ++YT V A Sbjct: 296 DLRTTQIYTHVLGQGFAG 313 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q47036 Probable site-specific recombinase in afa region... 340 2e-92 UniRef50_Q46776 Resolvase n=16 Tax=root RepID=Q46776_ECOLX 237 2e-61 UniRef50_Q6TFY0 ResD n=8 Tax=Enterobacteriaceae RepID=Q6TFY0_ERWAM 236 7e-61 UniRef50_A7M7E5 Int2 n=1 Tax=Serratia entomophila RepID=A7M7E5_9... 225 1e-57 UniRef50_P18021 Resolvase n=83 Tax=root RepID=REDM_ECOLX 219 5e-56 UniRef50_B3IBH1 Resolvase n=1 Tax=Escherichia coli E22 RepID=B3I... 217 3e-55 UniRef50_D1S150 DNA integration/recombination/invertion protein ... 214 2e-54 UniRef50_A4SUL6 Resolvase n=1 Tax=Aeromonas salmonicida subsp. s... 202 8e-51 UniRef50_B2TSE9 Resolvase n=9 Tax=Enterobacteriaceae RepID=B2TSE... 187 2e-46 UniRef50_C8QGI0 Integrase family protein n=2 Tax=Pantoea sp. At-... 174 2e-42 UniRef50_A3XLJ3 Tyrosine type site-specific recombinase n=1 Tax=... 171 2e-41 UniRef50_A2U2P8 Phage integrase family protein n=1 Tax=Polaribac... 171 2e-41 UniRef50_A0LZY5 Phage integrase family protein n=3 Tax=Bacteria ... 169 7e-41 UniRef50_C8NEN7 Integrase/recombinase XerC n=2 Tax=Granulicatell... 169 1e-40 UniRef50_B2VB47 Putative integrases, DNA breaking-rejoining enzy... 167 3e-40 UniRef50_A6H1H3 Integrase/recombinase n=2 Tax=Bacteria RepID=A6H... 167 4e-40 UniRef50_Q0W0L4 Integrase n=2 Tax=Euryarchaeota RepID=Q0W0L4_UNCMA 165 2e-39 UniRef50_C0WCK3 Recombinase n=1 Tax=Acidaminococcus sp. D21 RepI... 164 3e-39 UniRef50_C3RQN8 Site-specific tyrosine recombinase xerD n=3 Tax=... 163 4e-39 UniRef50_B8HGE6 Tyrosine recombinase XerD n=37 Tax=Actinobacteri... 163 5e-39 UniRef50_UPI0001C41B06 tyrosine recombinase XerC n=1 Tax=Methano... 163 5e-39 UniRef50_A6TQC7 Phage integrase family protein n=3 Tax=Clostridi... 163 6e-39 UniRef50_B1GYP8 Tyrosine recombinase XerD n=1 Tax=uncultured Ter... 163 6e-39 UniRef50_B5YF74 Tyrosine recombinase XerD n=2 Tax=Dictyoglomus R... 162 7e-39 UniRef50_A8UM85 Tyrosine type site-specific recombinase n=2 Tax=... 162 7e-39 UniRef50_Q1PZN1 Similar to site-specific tyrosine recombinase n=... 162 9e-39 UniRef50_Q72SA5 Tyrosine recombinase xerD n=6 Tax=Leptospira Rep... 162 1e-38 UniRef50_Q5HFS5 Tyrosine recombinase xerD n=101 Tax=Firmicutes R... 162 1e-38 UniRef50_Q04F60 Tyrosine recombinase XerD subunit n=9 Tax=Lactob... 161 2e-38 UniRef50_B6YWN8 Probable tyrosine recombinase xerC-like n=9 Tax=... 161 2e-38 UniRef50_D2MQ50 Phage integrase, N-terminal SAM domain protein n... 160 2e-38 UniRef50_Q71Y59 Tyrosine recombinase xerD n=19 Tax=Firmicutes Re... 160 3e-38 UniRef50_C0VHG1 Site-specific tyrosine recombinase n=1 Tax=Acine... 160 3e-38 UniRef50_UPI0001C4241D integrase/recombinase n=1 Tax=Bacillus ps... 160 5e-38 UniRef50_D2RKG6 Tyrosine recombinase XerD n=1 Tax=Acidaminococcu... 160 5e-38 UniRef50_A8F7B4 Tyrosine recombinase xerC n=1 Tax=Thermotoga let... 159 5e-38 UniRef50_C2KPQ6 Tyrosine recombinase n=2 Tax=Mobiluncus mulieris... 159 6e-38 UniRef50_B1VH11 Integrase/recombinase n=1 Tax=Corynebacterium ur... 159 6e-38 UniRef50_C1SMP5 Site-specific recombinase XerD n=1 Tax=Denitrovi... 159 7e-38 UniRef50_A4C321 Tyrosine type site-specific recombinase n=4 Tax=... 159 8e-38 UniRef50_D1N8W9 Tyrosine recombinase XerD n=1 Tax=Victivallis va... 159 1e-37 UniRef50_UPI0001698363 tyrosine recombinase XerD n=1 Tax=Endorif... 158 1e-37 UniRef50_A8RBU2 Putative uncharacterized protein n=2 Tax=unclass... 158 2e-37 UniRef50_D0GL18 Tyrosine recombinase XerD n=1 Tax=Leptotrichia g... 158 2e-37 UniRef50_C9RQE0 Integrase family protein n=1 Tax=Fibrobacter suc... 158 2e-37 UniRef50_D2BHG9 Site-specific recombinase n=5 Tax=Dehalococcoide... 158 2e-37 UniRef50_A8YV25 Integrase/recombinase n=13 Tax=Lactobacillus Rep... 157 2e-37 UniRef50_C0QJ38 Site-specific recombinase XerD (DNA replication,... 157 3e-37 UniRef50_B9YCM7 Putative uncharacterized protein n=1 Tax=Holdema... 157 4e-37 UniRef50_Q3Z771 Tyrosine recombinase XerD n=5 Tax=Dehalococcoide... 156 5e-37 UniRef50_A3M1C2 Site-specific tyrosine recombinase n=15 Tax=Mora... 156 5e-37 UniRef50_Q0AZB8 Tyrosine recombinase XerD subunit n=2 Tax=Firmic... 156 6e-37 UniRef50_C0QVM8 Site-specific recombinase XerD n=3 Tax=Brachyspi... 156 6e-37 UniRef50_A1U029 Phage integrase family protein n=2 Tax=Marinobac... 156 7e-37 UniRef50_C2G1Y8 Possible tyrosine recombinase n=3 Tax=Bacteroide... 156 7e-37 UniRef50_B5EB31 Tyrosine recombinase XerD n=4 Tax=Deltaproteobac... 155 8e-37 UniRef50_A4CN61 Tyrosine type site-specific recombinase n=1 Tax=... 155 1e-36 UniRef50_C4LIF6 Integrase/recombinase n=1 Tax=Corynebacterium kr... 155 1e-36 UniRef50_Q3AB72 Tyrosine recombinase XerC n=1 Tax=Carboxydotherm... 155 1e-36 UniRef50_B0VFY6 Tyrosine recombinase xerD n=1 Tax=Candidatus Clo... 155 2e-36 UniRef50_B2S2Y8 Integrase/recombinase n=4 Tax=Treponema RepID=B2... 154 2e-36 UniRef50_A1HN49 Tyrosine recombinase XerC n=1 Tax=Thermosinus ca... 154 2e-36 UniRef50_Q67PC5 Recombinase n=2 Tax=Firmicutes RepID=Q67PC5_SYMTH 154 2e-36 UniRef50_B5YGX8 Tyrosine recombinase XerD n=1 Tax=Thermodesulfov... 154 2e-36 UniRef50_A3DD82 Tyrosine recombinase XerD subunit n=13 Tax=Firmi... 154 2e-36 UniRef50_C0QM80 Tyrosine recombinase XerD n=1 Tax=Desulfobacteri... 154 2e-36 UniRef50_B0TP43 Integron integrase n=9 Tax=Bacteria RepID=B0TP43... 154 3e-36 UniRef50_B3QWZ3 Integrase family protein n=11 Tax=Bacteroidetes/... 154 3e-36 UniRef50_C0VWG3 Site-specific tyrosine recombinase XerD n=2 Tax=... 154 4e-36 UniRef50_B7CAN0 Putative uncharacterized protein n=1 Tax=Eubacte... 154 4e-36 UniRef50_C4FX95 Putative uncharacterized protein n=1 Tax=Catonel... 154 4e-36 UniRef50_D2RA84 Tyrosine recombinase XerD n=1 Tax=Gardnerella va... 154 4e-36 UniRef50_A8FD78 Tyrosine recombinase xerC n=89 Tax=Bacillaceae R... 153 4e-36 UniRef50_C8PTU7 Integron integrase n=1 Tax=Treponema vincentii A... 153 4e-36 UniRef50_D1R4B2 Putative uncharacterized protein n=1 Tax=Parachl... 153 5e-36 UniRef50_B8I2V9 Tyrosine recombinase XerD n=5 Tax=Bacteria RepID... 153 5e-36 UniRef50_D2LLC2 Integrase family protein n=2 Tax=Aciduliprofundu... 153 6e-36 UniRef50_A5EXM2 Tyrosine recombinase XerD n=1 Tax=Dichelobacter ... 153 6e-36 UniRef50_B8FH24 Tyrosine recombinase XerC n=2 Tax=Desulfobactera... 152 8e-36 UniRef50_C5TJ38 Tyrosine recombinase XerD n=5 Tax=Neisseriaceae ... 152 9e-36 UniRef50_C6JHS7 Transposase n=7 Tax=Bacteria RepID=C6JHS7_9FIRM 152 9e-36 UniRef50_C5CH36 Integrase family protein n=1 Tax=Kosmotoga olear... 152 1e-35 UniRef50_Q1Q4J1 Similar to site-specific recombinase n=1 Tax=Can... 152 1e-35 UniRef50_C3Q7K5 Tyrosine type site-specific recombinase n=7 Tax=... 152 1e-35 UniRef50_Q5WFP9 Site-specific tyrosine recombinase n=1 Tax=Bacil... 152 1e-35 UniRef50_C7PUZ0 Tyrosine recombinase XerD n=2 Tax=Sphingobacteri... 152 1e-35 UniRef50_Q11RL1 Site-specific recombinase n=15 Tax=Bacteroidetes... 152 1e-35 UniRef50_A9DNU9 Tyrosine type site-specific recombinase n=2 Tax=... 151 1e-35 UniRef50_A6DQI4 Tyrosine recombinase n=1 Tax=Lentisphaera araneo... 151 2e-35 UniRef50_C8R2R7 Tyrosine recombinase XerD n=1 Tax=Desulfurivibri... 151 2e-35 UniRef50_Q2GEQ3 Tyrosine recombinase XerD n=2 Tax=Neorickettsia ... 151 2e-35 UniRef50_P46352 Tyrosine recombinase xerD n=98 Tax=Bacteria RepI... 151 2e-35 UniRef50_UPI0000D54C0A tyrosine recombinase n=1 Tax=Psychroflexu... 151 2e-35 UniRef50_Q6MD42 Probable XerD protein n=1 Tax=Candidatus Protoch... 151 2e-35 UniRef50_B4D116 Integrase family protein n=1 Tax=Chthoniobacter ... 151 2e-35 UniRef50_D2RKK7 Tyrosine recombinase XerC n=3 Tax=Firmicutes Rep... 150 3e-35 UniRef50_Q7NVH1 Tyrosine recombinase xerC n=1 Tax=Chromobacteriu... 150 3e-35 UniRef50_C0W9S4 Tyrosine recombinase xerC n=1 Tax=Acidaminococcu... 150 5e-35 UniRef50_Q02C57 Phage integrase family protein n=1 Tax=Candidatu... 150 5e-35 UniRef50_C4UMA5 Site-specific recombinase in afa region n=1 Tax=... 150 5e-35 UniRef50_Q5LEL4 Putative tyrosine recombinase n=2 Tax=Bacteroide... 150 5e-35 UniRef50_B7IFN3 Tyrosine recombinase xerC n=3 Tax=Thermotogaceae... 149 6e-35 UniRef50_C5AC95 Tyrosine recombinase XerD n=82 Tax=cellular orga... 149 7e-35 UniRef50_P44630 Tyrosine recombinase xerD n=84 Tax=Proteobacteri... 149 7e-35 UniRef50_A6G731 Integrase/recombinase XerD n=1 Tax=Plesiocystis ... 149 8e-35 UniRef50_Q9F567 IntI2 protein n=38 Tax=Bacteria RepID=Q9F567_ECOLX 149 8e-35 UniRef50_C8WWD9 Integrase family protein n=2 Tax=Alicyclobacillu... 149 1e-34 UniRef50_C2D807 Possible integrase/recombinase XerD n=1 Tax=Atop... 148 2e-34 UniRef50_B2KBN7 Integrase family protein n=1 Tax=Elusimicrobium ... 148 2e-34 UniRef50_D0U650 Site-specific recombinase XerD n=1 Tax=unculture... 147 2e-34 UniRef50_A4G2A1 Tyrosine recombinase XerD n=3 Tax=Proteobacteria... 147 2e-34 UniRef50_C2D6I8 Tyrosine recombinase n=1 Tax=Atopobium vaginae D... 147 3e-34 UniRef50_D0U5Z8 Tyrosine recombinase XerD n=1 Tax=uncultured act... 147 3e-34 UniRef50_D2R836 Tyrosine recombinase XerC n=1 Tax=Pirellula stal... 147 3e-34 UniRef50_B2UNK4 Integrase family protein n=2 Tax=Verrucomicrobia... 147 3e-34 UniRef50_D1B5G4 Integrase family protein n=2 Tax=Synergistaceae ... 147 3e-34 UniRef50_A4BJY9 Resolvase n=1 Tax=Reinekea blandensis MED297 Rep... 147 4e-34 UniRef50_Q7ZAJ8 Tyrosine recombinase xerD n=13 Tax=Gammaproteoba... 147 4e-34 UniRef50_D0W4M6 Tyrosine recombinase XerD n=1 Tax=Neisseria cine... 147 4e-34 UniRef50_B9XL74 Integrase family protein n=1 Tax=bacterium Ellin... 147 4e-34 UniRef50_C1SMY6 Site-specific recombinase XerD n=1 Tax=Denitrovi... 147 4e-34 UniRef50_P55632 Putative integrase/recombinase y4qK n=15 Tax=Pro... 147 5e-34 UniRef50_C6LKW3 Tyrosine recombinase XerD n=3 Tax=Clostridiales ... 146 6e-34 UniRef50_D1KE10 Site-specific recombinase XerC n=1 Tax=unculture... 146 7e-34 UniRef50_D0WF42 Tyrosine recombinase XerD n=1 Tax=Slackia exigua... 145 9e-34 UniRef50_A1VDD4 Tyrosine recombinase XerD subunit n=12 Tax=Desul... 145 1e-33 UniRef50_Q30R56 Tyrosine recombinase XerD subunit n=5 Tax=Epsilo... 145 1e-33 UniRef50_A0L875 Tyrosine recombinase XerD subunit n=2 Tax=Proteo... 145 1e-33 UniRef50_C7LWB1 Integrase family protein n=2 Tax=Desulfovibriona... 144 2e-33 UniRef50_Q1MRT1 Site-specific recombinase n=3 Tax=Desulfovibrion... 144 3e-33 UniRef50_C5RBD8 Integrase/recombinase n=1 Tax=Weissella paramese... 144 3e-33 UniRef50_C9NXY9 Integron integrase IntI2 n=1 Tax=Vibrio corallii... 144 3e-33 UniRef50_Q01TI9 Phage integrase family protein n=6 Tax=Candidatu... 143 5e-33 UniRef50_D2R3Y9 Integrase family protein n=1 Tax=Pirellula stale... 143 5e-33 UniRef50_D1W8B5 Putative tyrosine recombinase XerD n=1 Tax=Prevo... 143 5e-33 UniRef50_Q2RJP7 Tyrosine recombinase XerD subunit n=1 Tax=Moorel... 143 5e-33 UniRef50_UPI0001C31AAB integrase family protein n=1 Tax=Conexiba... 143 6e-33 UniRef50_Q12Q52 Phage integrase n=12 Tax=Gammaproteobacteria Rep... 142 7e-33 UniRef50_A6DT72 Phage integrase n=1 Tax=Lentisphaera araneosa HT... 140 3e-32 UniRef50_Q1VZY8 Tyrosine type site-specific recombinase n=5 Tax=... 140 3e-32 UniRef50_B8FRH1 Integrase family protein n=3 Tax=Clostridiales R... 140 4e-32 UniRef50_A8VRZ0 Putative helix-turn-helix protein, YlxM/p13 fami... 139 6e-32 UniRef50_Q30SH3 Integron integrase n=2 Tax=Bacteria RepID=Q30SH3... 139 6e-32 UniRef50_D0LHX4 Integrase family protein n=1 Tax=Haliangium ochr... 139 8e-32 UniRef50_C8NZN0 Integrase/recombinase XerD n=1 Tax=Erysipelothri... 139 8e-32 UniRef50_B9XMB7 Integrase family protein n=1 Tax=bacterium Ellin... 139 9e-32 UniRef50_Q0F1F3 Tyrosine recombinase n=1 Tax=Mariprofundus ferro... 138 1e-31 UniRef50_B5JZ18 Phage integrase n=14 Tax=Rhodobacteraceae RepID=... 137 2e-31 UniRef50_A3EW74 Putative phage integrase family protein n=2 Tax=... 137 3e-31 UniRef50_B0SBH2 Tyrosine site-specific recombinase XerC n=2 Tax=... 137 3e-31 UniRef50_B1HMD0 Integrase-recombinase protein n=1 Tax=Lysinibaci... 137 4e-31 UniRef50_B8IZE7 Integrase family protein n=5 Tax=Desulfovibriona... 137 4e-31 UniRef50_Q0ACL7 Tyrosine recombinase XerC n=4 Tax=Gammaproteobac... 135 9e-31 Sequences not found previously or not previously below threshold: UniRef50_B5YFC5 Recombinase n=2 Tax=Dictyoglomus RepID=B5YFC5_DICT6 160 3e-38 UniRef50_D0BKQ9 Tyrosine recombinase XerD n=2 Tax=Firmicutes Rep... 159 8e-38 UniRef50_Q2LSM9 Integrase/recombinase n=6 Tax=Bacteria RepID=Q2L... 157 3e-37 UniRef50_Q03FK2 Tyrosine recombinase xerC n=72 Tax=Bacilli RepID... 155 2e-36 UniRef50_Q93C64 Tyrosine recombinase xerD n=50 Tax=Bacilli RepID... 153 4e-36 UniRef50_A5WBQ8 Tyrosine recombinase XerD n=6 Tax=Moraxellaceae ... 153 6e-36 UniRef50_A9NG15 Site-specific tyrosine recombinase n=1 Tax=Achol... 153 6e-36 UniRef50_B5YFZ8 Tyrosine recombinase xerC n=1 Tax=Thermodesulfov... 152 8e-36 UniRef50_B1GYR5 Tyrosine recombinase XerC n=1 Tax=uncultured Ter... 152 9e-36 UniRef50_B7VJ63 Tyrosine recombinase xerD n=5 Tax=Vibrionales Re... 152 9e-36 UniRef50_C6WZV5 Integrase n=2 Tax=Flavobacteriaceae RepID=C6WZV5... 152 1e-35 UniRef50_D0AM75 Phage integrase n=14 Tax=Bacilli RepID=D0AM75_ENTFC 152 1e-35 UniRef50_Q01SN8 Tyrosine recombinase XerD subunit n=1 Tax=Candid... 151 2e-35 UniRef50_Q7UQK2 Integrase/recombinase n=1 Tax=Rhodopirellula bal... 151 2e-35 UniRef50_C2CV68 Integrase/recombinase XerD n=3 Tax=Bifidobacteri... 151 2e-35 UniRef50_D2NUA7 Site-specific recombinase XerD n=3 Tax=Actinomyc... 151 2e-35 UniRef50_Q04F40 Tyrosine recombinase XerC subunit n=5 Tax=Leucon... 151 2e-35 UniRef50_O26979 Probable tyrosine recombinase xerC-like n=3 Tax=... 150 4e-35 UniRef50_C3RL48 Tyrosine recombinase xerC n=4 Tax=Bacteria RepID... 150 4e-35 UniRef50_A6U170 Tyrosine recombinase xerC n=66 Tax=Staphylococca... 150 4e-35 UniRef50_UPI0001C31A82 tyrosine recombinase XerD n=1 Tax=Conexib... 150 4e-35 UniRef50_Q1G9V2 Tyrosine recombinase xerC n=28 Tax=Lactobacillus... 149 8e-35 UniRef50_Q1NT18 Tyrosine recombinase XerC n=2 Tax=Deltaproteobac... 149 1e-34 UniRef50_Q8KET0 Tyrosine recombinase xerD n=12 Tax=Chlorobiaceae... 149 1e-34 UniRef50_A6KYQ9 Integrase n=60 Tax=Bacteria RepID=A6KYQ9_BACV8 149 1e-34 UniRef50_B0VFS7 Site-specific recombinase, phage integrase famil... 149 1e-34 UniRef50_A1RWD6 Phage integrase family protein n=1 Tax=Thermofil... 148 2e-34 UniRef50_Q7MNQ0 Tyrosine recombinase xerD n=287 Tax=Proteobacter... 148 2e-34 UniRef50_B0TH94 Tyrosine recombinase xerc, putative n=1 Tax=Heli... 148 2e-34 UniRef50_B9YAX8 Putative uncharacterized protein n=1 Tax=Holdema... 147 2e-34 UniRef50_A8RBK4 Putative uncharacterized protein n=1 Tax=Eubacte... 147 2e-34 UniRef50_C7N4T8 Tyrosine recombinase XerD n=7 Tax=Coriobacteriac... 147 3e-34 UniRef50_B1ZQV6 Tyrosine recombinase XerD n=3 Tax=Verrucomicrobi... 147 3e-34 UniRef50_Q9JV76 Tyrosine recombinase xerD n=22 Tax=Neisseria Rep... 146 5e-34 UniRef50_A6CBK7 Integrase/recombinase n=5 Tax=Planctomycetaceae ... 146 7e-34 UniRef50_Q49890 Tyrosine recombinase xerD n=54 Tax=Actinobacteri... 146 8e-34 UniRef50_D2LQ39 Integrase family protein n=3 Tax=Aciduliprofundu... 146 8e-34 UniRef50_Q4UYY0 Tyrosine recombinase xerC n=153 Tax=Gammaproteob... 145 9e-34 UniRef50_A9F3K0 Site-specific recombinase n=1 Tax=Sorangium cell... 145 9e-34 UniRef50_C1A8W1 Tyrosine recombinase XerD n=1 Tax=Gemmatimonas a... 145 1e-33 UniRef50_B3SZY7 Putative Phage integrase family protein n=1 Tax=... 145 1e-33 UniRef50_C8XHP9 Tyrosine recombinase XerD n=1 Tax=Nakamurella mu... 145 2e-33 UniRef50_B2A335 Tyrosine recombinase xerC n=2 Tax=Clostridia Rep... 144 2e-33 UniRef50_Q1RHT1 Tyrosine recombinase xerD n=18 Tax=Rickettsieae ... 144 2e-33 UniRef50_C2G1G7 Integrase/recombinase n=2 Tax=Bacteroidetes RepI... 144 2e-33 UniRef50_B3GZ58 Tyrosine recombinase xerC n=39 Tax=Gammaproteoba... 144 3e-33 UniRef50_B3DV17 Site-specific recombinase XerD n=1 Tax=Methylaci... 144 3e-33 UniRef50_B6BVG8 Tyrosine recombinase XerC n=2 Tax=Betaproteobact... 144 3e-33 UniRef50_UPI000196CAFB hypothetical protein CATMIT_02473 n=1 Tax... 144 4e-33 UniRef50_C6LGQ0 Tyrosine recombinase XerD n=3 Tax=Clostridiales ... 144 4e-33 UniRef50_D2QLD0 Integrase family protein n=1 Tax=Spirosoma lingu... 144 4e-33 UniRef50_Q8NNZ9 Tyrosine recombinase xerC n=13 Tax=Actinomycetal... 144 4e-33 UniRef50_A5UKA5 Integrase-recombinase protein, phage integrase f... 143 5e-33 UniRef50_C6J0X8 Phage integrase n=1 Tax=Paenibacillus sp. oral t... 143 6e-33 UniRef50_C5SKT5 Integrase family protein n=1 Tax=Asticcacaulis e... 143 6e-33 UniRef50_D2Q578 Integrase/recombinase n=3 Tax=Bifidobacterium Re... 142 7e-33 UniRef50_D2MLX1 Phage integrase, N-terminal SAM domain protein n... 142 9e-33 UniRef50_Q2IIH9 Tyrosine recombinase XerD subunit n=11 Tax=Delta... 142 1e-32 UniRef50_D1AIZ1 Integrase family protein n=2 Tax=Fusobacteriacea... 142 1e-32 UniRef50_Q3IDS2 Site-specific recombinase n=3 Tax=Alteromonadale... 141 2e-32 UniRef50_B2KAP5 Integrase family protein n=1 Tax=Elusimicrobium ... 141 2e-32 UniRef50_Q1D804 Tyrosine recombinase xerC n=9 Tax=Deltaproteobac... 141 2e-32 UniRef50_B9YZP4 Tyrosine recombinase XerC n=3 Tax=Proteobacteria... 141 2e-32 UniRef50_D1B6D4 Integrase family protein n=3 Tax=Synergistaceae ... 140 3e-32 UniRef50_B5Y8G2 Tyrosine recombinase XerC n=1 Tax=Coprothermobac... 140 3e-32 UniRef50_C8P0J8 Tyrosine recombinase XerC n=1 Tax=Erysipelothrix... 140 4e-32 UniRef50_B3E1H7 Tyrosine recombinase xerC n=8 Tax=Desulfuromonad... 140 4e-32 UniRef50_UPI0001973487 tyrosine recombinase XerD n=1 Tax=Clostri... 140 5e-32 UniRef50_B0MY63 Putative uncharacterized protein n=1 Tax=Alistip... 140 5e-32 UniRef50_D1CD80 Integrase family protein n=1 Tax=Thermobaculum t... 139 6e-32 UniRef50_Q60AJ2 Integrase/recombinase XerC n=1 Tax=Methylococcus... 139 6e-32 UniRef50_C0W1H5 Possible integrase/recombinase n=1 Tax=Actinomyc... 139 6e-32 UniRef50_B8FPN6 Tyrosine recombinase XerD n=2 Tax=Desulfitobacte... 139 8e-32 UniRef50_D2Q591 Integrase/recombinase (XerD/RipX family) n=10 Ta... 139 9e-32 UniRef50_Q2LT92 Tyrosine recombinase xerC n=1 Tax=Syntrophus aci... 139 1e-31 UniRef50_A0LEB8 Tyrosine recombinase xerC n=1 Tax=Syntrophobacte... 138 1e-31 UniRef50_A5G656 Phage integrase family protein n=1 Tax=Geobacter... 138 1e-31 UniRef50_A6CC23 Integrase/recombinase n=2 Tax=Planctomyces RepID... 138 2e-31 UniRef50_Q87DN0 Tyrosine recombinase xerD n=57 Tax=Proteobacteri... 138 2e-31 UniRef50_Q97HE5 Tyrosine recombinase xerD n=18 Tax=Clostridium R... 138 2e-31 UniRef50_A7NFG3 Tyrosine recombinase xerC n=6 Tax=Chloroflexi (c... 138 2e-31 UniRef50_Q9A437 Tyrosine recombinase xerD n=11 Tax=Alphaproteoba... 137 2e-31 UniRef50_Q0EWI0 Tyrosine recombinase XerD n=1 Tax=Mariprofundus ... 137 2e-31 UniRef50_Q0C629 Tyrosine recombinase XerD n=2 Tax=Hyphomonadacea... 137 3e-31 UniRef50_B3PEI6 Tyrosine recombinase XerC n=1 Tax=Cellvibrio jap... 137 3e-31 UniRef50_C6J3X1 Tyrosine recombinase XerD n=1 Tax=Paenibacillus ... 137 3e-31 UniRef50_A6DTG9 Integrase/recombinase n=1 Tax=Lentisphaera arane... 137 4e-31 UniRef50_B2UMQ9 Tyrosine recombinase XerC n=4 Tax=Verrucomicrobi... 137 4e-31 UniRef50_C4L386 Tyrosine recombinase XerD n=3 Tax=Firmicutes Rep... 137 5e-31 UniRef50_B0TX96 Phage integrase family protein n=19 Tax=Francise... 136 5e-31 UniRef50_A3ZUD5 Integrase/recombinase n=2 Tax=Planctomycetaceae ... 136 5e-31 UniRef50_C4L615 Integrase family protein n=2 Tax=Exiguobacterium... 136 6e-31 UniRef50_Q5FDD4 Integrase/recombinase n=7 Tax=canis group RepID=... 136 7e-31 UniRef50_C8WAJ5 Integrase family protein n=2 Tax=Atopobium RepID... 135 9e-31 UniRef50_Q9PL53 Tyrosine recombinase xerD n=15 Tax=Chlamydiaceae... 135 9e-31 UniRef50_C4ZGY6 Tyrosine recombinase xerC n=3 Tax=Clostridiales ... 135 9e-31 UniRef50_A8SVW3 Putative uncharacterized protein n=1 Tax=Coproco... 135 9e-31 >UniRef50_Q47036 Probable site-specific recombinase in afa region n=45 Tax=Bacteria RepID=INTL_ECOLX Length = 246 Score = 340 bits (872), Expect = 2e-92, Method: Composition-based stats. Identities = 242/246 (98%), Positives = 245/246 (99%) Query: 1 MNNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ 60 MNNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ Sbjct: 1 MNNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ 60 Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 RHHMLFATLWNTGMRIGEAR++TPESFDLDGVRPFVR+LSEKVRARRGRPPKDEVRLVPL Sbjct: 61 RHHMLFATLWNTGMRIGEARIVTPESFDLDGVRPFVRVLSEKVRARRGRPPKDEVRLVPL 120 Query: 121 TDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFR 180 TDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSI VTPHTFR Sbjct: 121 TDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSISVTPHTFR 180 Query: 181 HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILR 240 HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILR Sbjct: 181 HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILR 240 Query: 241 TLPPLK 246 TLPPLK Sbjct: 241 TLPPLK 246 >UniRef50_Q46776 Resolvase n=16 Tax=root RepID=Q46776_ECOLX Length = 178 Score = 237 bits (605), Expect = 2e-61, Method: Composition-based stats. Identities = 162/189 (85%), Positives = 174/189 (92%), Gaps = 12/189 (6%) Query: 57 MPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVR 116 MPDQRHHMLFAT+WNTG+RIGEAR LTPESFDLDG+RPFVR+LS ++VR Sbjct: 1 MPDQRHHMLFATMWNTGIRIGEARTLTPESFDLDGLRPFVRVLS------------EKVR 48 Query: 117 LVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTP 176 LVPLTD+S+VRQMESWM+TTRPRRREPLW VTDETMRNWLKQAV+RAEADGVHFSIPVTP Sbjct: 49 LVPLTDVSFVRQMESWMVTTRPRRREPLWPVTDETMRNWLKQAVKRAEADGVHFSIPVTP 108 Query: 177 HTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAA 236 HTFRHSYIMHMLYHRQPRKVIQALAGH+DPRSMEVYTRVFALDMAATLAVPFTGDG DAA Sbjct: 109 HTFRHSYIMHMLYHRQPRKVIQALAGHKDPRSMEVYTRVFALDMAATLAVPFTGDGHDAA 168 Query: 237 EILRTLPPL 245 +ILRTLPPL Sbjct: 169 QILRTLPPL 177 >UniRef50_Q6TFY0 ResD n=8 Tax=Enterobacteriaceae RepID=Q6TFY0_ERWAM Length = 246 Score = 236 bits (601), Expect = 7e-61, Method: Composition-based stats. Identities = 121/238 (50%), Positives = 147/238 (61%), Gaps = 10/238 (4%) Query: 3 NVIPLQNSPERVSLLP-----IAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYM 57 N PLQ S S D+A AL+LR MA S P YLLAPEVS L Y+ Sbjct: 2 NTFPLQISQNSRSDAIGTGRVTYAYFDYADALALREMA-SQADLPKYLLAPEVSVFLRYV 60 Query: 58 PDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRAR-RGRPPKDE-- 114 PD R +LF TLWNTG RI EA LT SF LDG RPFVR+ + K R R RGRP KDE Sbjct: 61 PDLRQQVLFDTLWNTGARINEALALTGASFQLDGSRPFVRLKTLKQRQRGRGRPGKDEEV 120 Query: 115 VRLVPLTDISYVRQMESWMITTRPRRREPLWAV-TDETMRNWLKQAVRRAEADGVHFSIP 173 RLVPLTD YVR++ ++ T R +++ LW V +D T RNW+++A+ A+ D V FSIP Sbjct: 121 FRLVPLTDPQYVRKVREFLTTLRIGKQQLLWPVQSDNTPRNWIRKALDLAKRDSVTFSIP 180 Query: 174 VTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 VT HTFRHS+ MH++ H P KV+QA AGH + E YTRVFALD+ V F+ Sbjct: 181 VTCHTFRHSFCMHLIQHGVPLKVVQAYAGHSRLETTETYTRVFALDVGRQYGVRFSLP 238 >UniRef50_A7M7E5 Int2 n=1 Tax=Serratia entomophila RepID=A7M7E5_9ENTR Length = 236 Score = 225 bits (573), Expect = 1e-57, Method: Composition-based stats. Identities = 109/228 (47%), Positives = 148/228 (64%), Gaps = 7/228 (3%) Query: 20 APGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEA 79 +P DFA A+++RRMA + PAYLLAPE++ LL M D R MLF LWNTG RI EA Sbjct: 6 SPYFDFAQAVAMRRMALNLSDQPAYLLAPEITLLLDNMTDLRRRMLFDFLWNTGARINEA 65 Query: 80 RMLTPESFDLDGVRPFVRILSEKVR----ARRGRPPKDE--VRLVPLTDISYVRQMESWM 133 +TP+ LD V+PFV + + K R RRGRP KD R +PL D S+ R++ + Sbjct: 66 LAVTPKDIVLDAVKPFVVLRTLKQRNHTAGRRGRPGKDTPVKRTLPLLDPSFARRLRDHL 125 Query: 134 ITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSI-PVTPHTFRHSYIMHMLYHRQ 192 T +P+W ++D+T RNWLK+A+ A+ +G+HFSI +TPHTFRHS+ MH+LY+R Sbjct: 126 ATFTRYVTKPVWEISDDTARNWLKEALGHAQRNGMHFSIESITPHTFRHSFAMHLLYNRV 185 Query: 193 PRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILR 240 K++Q+ GHRD +S E+YTRVFALD+A L V F A ++L Sbjct: 186 HPKILQSFMGHRDYKSTEIYTRVFALDVAGQLGVRFDMTPEQAFKLLS 233 >UniRef50_P18021 Resolvase n=83 Tax=root RepID=REDM_ECOLX Length = 260 Score = 219 bits (559), Expect = 5e-56, Method: Composition-based stats. Identities = 117/256 (45%), Positives = 153/256 (59%), Gaps = 21/256 (8%) Query: 6 PLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHML 65 P+ ++ + V L +D+ AL+LR+M+ P YLLAPEVSALL Y+PD R ML Sbjct: 7 PIHHARDAVQL---PVAIDYPAALALRQMSMVHDELPKYLLAPEVSALLHYVPDLRRKML 63 Query: 66 FATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARR-----GRPP--KDEVRLV 118 ATLWNTG RI EA LT F L PFV++ + K R + GR P + RLV Sbjct: 64 LATLWNTGARINEALALTRGDFSLTPPYPFVQLATLKQRTEKAARTAGRMPAGQQTHRLV 123 Query: 119 PLTDISYVRQMESWM------ITTRPRR-----REPLWAVTDETMRNWLKQAVRRAEADG 167 PL+D YV Q+++ + + R +R + +W VTD T+R W+ +AV A ADG Sbjct: 124 PLSDSWYVSQLQTMVATLKIPMERRNKRTGRTEKARIWEVTDRTVRTWIGEAVAAAAADG 183 Query: 168 VHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVP 227 V FS+PVTPHTFRHSY MHMLY P KV+Q+L GH+ S EVYT+VFALD+AA V Sbjct: 184 VTFSVPVTPHTFRHSYAMHMLYAGIPLKVLQSLMGHKSISSTEVYTKVFALDVAARHRVQ 243 Query: 228 FTGDGRDAAEILRTLP 243 F+ DA +L+ Sbjct: 244 FSMPESDAVTMLKNRH 259 >UniRef50_B3IBH1 Resolvase n=1 Tax=Escherichia coli E22 RepID=B3IBH1_ECOLX Length = 236 Score = 217 bits (553), Expect = 3e-55, Method: Composition-based stats. Identities = 105/223 (47%), Positives = 141/223 (63%), Gaps = 4/223 (1%) Query: 21 PGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEAR 80 P ++ TA++LR MA P YLLAPEV+ LL Y+PD+R MLFATLW TG RI EA Sbjct: 11 PATNYETAIALRGMALLQPYLPKYLLAPEVAVLLHYLPDERQRMLFATLWITGPRITEAL 70 Query: 81 MLTPESFDLDGVRPFVRILSEKVRAR-RGRPPKDE--VRLVPLTDISYVRQMESWMITTR 137 +TPE LDG R +R+ K R R RGRP DE R+VPL D +YV Q+ ++ T R Sbjct: 71 TITPEDLQLDGPRHCIRLRKLKQRQRGRGRPSADEKIARIVPLLDAAYVDQLRRYLATFR 130 Query: 138 PRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIP-VTPHTFRHSYIMHMLYHRQPRKV 196 RR PL+AV+ +T W++QA+ RA + + F++P + P T RHS+ MH+ ++ P KV Sbjct: 131 TGRRRPLFAVSRKTAWLWMQQAIDRAREEVIEFALPAINPKTLRHSFAMHLYFNHVPPKV 190 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEIL 239 +QA GH S EVY +VFALD+A L V F+ RD + +L Sbjct: 191 VQAYMGHERYESTEVYLKVFALDVAPQLGVTFSLAHRDYSHLL 233 >UniRef50_D1S150 DNA integration/recombination/invertion protein n=1 Tax=Serratia odorifera 4Rx13 RepID=D1S150_SEROD Length = 264 Score = 214 bits (545), Expect = 2e-54, Method: Composition-based stats. Identities = 100/232 (43%), Positives = 132/232 (56%), Gaps = 13/232 (5%) Query: 22 GVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARM 81 D+ AL LR+MA + P YLLAPEV+A L Y+ + H LWNTG RI EA Sbjct: 23 PQDYQRALELRQMAMTYDDLPKYLLAPEVAAQLHYVEEWSQHAFVNLLWNTGARINEALA 82 Query: 82 LTPESFDLDGVRPFVRILSEKVRA---RRGRPPKDEVRLVPLTDISYVRQMESWMITTR- 137 + F L+ P V + K R R + K R+VPLTD +V ++ +T+ Sbjct: 83 VCRRDFRLNVTMPHVIYRTAKQRRAGPGRPKKGKSAHRIVPLTDPLFVDELRRLFASTKE 142 Query: 138 -----PRRRE----PLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHML 188 P E P+W VTD T+RNWL +A +A DG+ FSIP+TPH FRHSY MHM+ Sbjct: 143 QFEINPETGERTPLPIWQVTDRTVRNWLTKAENQARRDGIRFSIPITPHVFRHSYAMHMI 202 Query: 189 YHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILR 240 Y P KV+Q L GH P S EVYTRVFALD+ A+ V F+ +D+ +++R Sbjct: 203 YQGTPLKVLQGLLGHEKPESTEVYTRVFALDIVASHQVQFSLPAQDSLDMVR 254 >UniRef50_A4SUL6 Resolvase n=1 Tax=Aeromonas salmonicida subsp. salmonicida A449 RepID=A4SUL6_AERS4 Length = 256 Score = 202 bits (514), Expect = 8e-51, Method: Composition-based stats. Identities = 99/234 (42%), Positives = 137/234 (58%), Gaps = 6/234 (2%) Query: 6 PLQNSPERVSLL-PIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHM 64 PL N+ + L+ P + A +LR +A + P YLLA EV A+L +PD + + Sbjct: 15 PLGNALQGTPLVRPAGNPEQWRVATALRNLAIAHTDAPRYLLAHEVGAVLAMLPDLQRRV 74 Query: 65 LFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRAR-RGRPPKDEV--RLVPLT 121 L ATLWNTG RI EA LTP F+LDG RPFV + + K R+R +GRP + RLVPL Sbjct: 75 LIATLWNTGARINEALALTPGDFELDGGRPFVVLRTLKQRSRGKGRPRAGDAVKRLVPLL 134 Query: 122 DISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRH 181 D + + ++ T + R +W VTD+T+RNWLK+A GVH +P+TPH FRH Sbjct: 135 DPVFAQLAREYLATVKLARGARIWPVTDQTVRNWLKEADTALRGRGVHLVVPLTPHVFRH 194 Query: 182 SYIMHMLYHR-QPRKVIQALAGHRDPRSMEVYTRVFALDMAAT-LAVPFTGDGR 233 ++ MH+L K +QA GHR +S EVYT+V ALD AA+ + + F+ Sbjct: 195 AFAMHLLLQGNLHIKRLQAYLGHRSLKSTEVYTQVLALDAAASEIGLSFSVANE 248 >UniRef50_B2TSE9 Resolvase n=9 Tax=Enterobacteriaceae RepID=B2TSE9_SHIB3 Length = 299 Score = 187 bits (476), Expect = 2e-46, Method: Composition-based stats. Identities = 98/241 (40%), Positives = 135/241 (56%), Gaps = 28/241 (11%) Query: 27 TALSLRRMATSTGA-TPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPE 85 A ++R +A GA P YL+APEVS LL Y+ D M F TLWNTG R+ EA L P Sbjct: 50 AARNMRDLAAQIGAGMPKYLIAPEVSLLLSYIDDLNIRMYFETLWNTGARLNEALALKPA 109 Query: 86 SFDLDGVRPF------VRILSEKVRA-------------------RRGRPPKDEVRLVPL 120 F L R + ++ L ++++ R +P + VRLVP+ Sbjct: 110 DFMLTPTRQYPQPVVILKTLKQRLKEAERRPGRPTTRHPPLHPDPRYRKPQEPAVRLVPV 169 Query: 121 TDISYVRQMESWMITTRPR-RREPLWAVT-DETMRNWLKQAVRRAEADGVHFSIPVTPHT 178 D Y +M ++ T + R + +P+W +T +T NW+ AV RAE DGV FS+PVTPHT Sbjct: 170 LDAGYALRMREYLATWKKRIKHQPVWDITSRQTPLNWINTAVARAERDGVTFSVPVTPHT 229 Query: 179 FRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEI 238 FRHSY MH+ P +V+Q+L GHR RS E+YTRVF+LD+ + FT D R A ++ Sbjct: 230 FRHSYAMHLTMSGVPPRVLQSLLGHRYARSTEIYTRVFSLDVLTGSGLSFTCDPRRAKQL 289 Query: 239 L 239 L Sbjct: 290 L 290 >UniRef50_C8QGI0 Integrase family protein n=2 Tax=Pantoea sp. At-9b RepID=C8QGI0_9ENTR Length = 239 Score = 174 bits (442), Expect = 2e-42, Method: Composition-based stats. Identities = 98/233 (42%), Positives = 126/233 (54%), Gaps = 34/233 (14%) Query: 41 TPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDG-------VR 93 P YLLAPEV+ LL + D R + LWNTG R+ E LT E F LD Sbjct: 1 MPRYLLAPEVAVLLAKVTDLRKRLFIDALWNTGGRLNEILPLTREDFVLDDPLTGAPLSS 60 Query: 94 PFVRILSEKVRA----------RRGRPPK---------------DEVRLVPLTDISYVRQ 128 PFV + + K R RRGRP K + R VPLTD +V++ Sbjct: 61 PFVVLRTLKQRGLEEAARNRSRRRGRPTKEEQQAEREAEAEIRDNPPRAVPLTDPGFVQR 120 Query: 129 MESWMITTRPRRREPLWAV-TDETMRNWLKQAVRRAEADGVHFSI-PVTPHTFRHSYIMH 186 + W T P LW + +++T R+W+ QAV AE DGV FSI PVTP TFR S+ MH Sbjct: 121 LREWFATVNPPAGARLWDIRSEDTARSWISQAVAAAERDGVTFSIRPVTPKTFRDSFAMH 180 Query: 187 MLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEIL 239 ++ H+ P+KVIQ L GH+D +S E YTRVFALD+ L V F+ D +A +L Sbjct: 181 LVQHQVPQKVIQTLMGHKDAKSTEWYTRVFALDVTRQLGVRFSMDPAEARSLL 233 >UniRef50_A3XLJ3 Tyrosine type site-specific recombinase n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XLJ3_9FLAO Length = 405 Score = 171 bits (433), Expect = 2e-41, Method: Composition-based stats. Identities = 63/213 (29%), Positives = 95/213 (44%), Gaps = 16/213 (7%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGV 92 + P L EV LL P+ +H + A L++ G+RIGE L ++ DLD + Sbjct: 200 QRPKKDKKLPVVLSRKEVIDLLRATPNLKHRTILALLYSAGLRIGELLALRCDAIDLDRM 259 Query: 93 RPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETM 152 + + +K + R+ R K +VPL + MES+ T + + Sbjct: 260 QVHI----KKGKGRKDRTVKLAQAVVPL----LLNYMESYAPTHYLIPGRDGQGYSAGAI 311 Query: 153 RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVY 212 R +LK++ RA VTPHT RHSY HM+ H + IQ L GH P + +Y Sbjct: 312 RTFLKKSCTRA-----GIKKAVTPHTLRHSYATHMMDHGVALRHIQELLGHAKPETTMIY 366 Query: 213 TRVFALDM---AATLAVPFTGDGRDAAEILRTL 242 T V D+ A L V + ++A E + L Sbjct: 367 THVSQQDLFEVANPLDVTISQITKNAKEQQKVL 399 >UniRef50_A2U2P8 Phage integrase family protein n=1 Tax=Polaribacter sp. MED152 RepID=A2U2P8_9FLAO Length = 385 Score = 171 bits (433), Expect = 2e-41, Method: Composition-based stats. Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 21/193 (10%) Query: 34 MATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVR 93 + P+ L EV ++ + +H + A L++ G+RI E L + F ++ + Sbjct: 182 RPKKSKKLPSVLSQEEVLRIISVTTNLKHRAIIALLYSCGLRISELINLKLKDFHIERKQ 241 Query: 94 PFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR----REPLWAVTD 149 V+ G+ KD R V L + S++ ++++ + P+ + Sbjct: 242 LIVKS---------GKGRKD--RYVSLAE-SFMPLLKNYYYSYEPKEFFVEGMNGEKYSA 289 Query: 150 ETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSM 209 ++R +LK++ ++A VTPHT RHSY H+L + + IQ+L GH P + Sbjct: 290 SSVRAFLKKSCKKA-----GIQRAVTPHTLRHSYATHLLENGVDIRYIQSLLGHSRPETT 344 Query: 210 EVYTRVFALDMAA 222 +YT V D+ Sbjct: 345 MIYTHVKRKDLMQ 357 >UniRef50_A0LZY5 Phage integrase family protein n=3 Tax=Bacteria RepID=A0LZY5_GRAFK Length = 385 Score = 169 bits (428), Expect = 7e-41, Method: Composition-based stats. Identities = 51/193 (26%), Positives = 89/193 (46%), Gaps = 21/193 (10%) Query: 34 MATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVR 93 + P L E+ LL + +H + A ++++G+R+GE L + D+D + Sbjct: 179 RPKKSRFLPTVLSKEEIIDLLRLTRNLKHRCILALIYSSGLRVGELINLHLKDIDIDRKQ 238 Query: 94 PFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR----REPLWAVTD 149 ++ + + KD R V L + S++ + +++ T P+R + Sbjct: 239 ILIK---------QAKGRKD--RYVMLAE-SFLPLLYNYLQTYEPKRYFTEGYDNKKYSS 286 Query: 150 ETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSM 209 +R++LK + RRA+ S VTPHT RHS+ HML + + IQ L GH P + Sbjct: 287 SAIRSFLKDSCRRAK-----ISKKVTPHTLRHSFATHMLENGTDLRYIQELLGHSKPETT 341 Query: 210 EVYTRVFALDMAA 222 +YT V D+ Sbjct: 342 MIYTHVAKKDLMK 354 >UniRef50_C8NEN7 Integrase/recombinase XerC n=2 Tax=Granulicatella RepID=C8NEN7_9LACT Length = 318 Score = 169 bits (427), Expect = 1e-40, Method: Composition-based stats. Identities = 51/217 (23%), Positives = 90/217 (41%), Gaps = 38/217 (17%) Query: 41 TPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 P + E+ + + DQR+ L L+ TGMR+ E LT E DLD Sbjct: 108 LPEFFYEDEIEKFINSIDGNQSLDQRNKALVEVLYATGMRVSELTNLTLEQLDLDNSIIL 167 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP-----RRREPLW----- 145 V G+ K+ R VP+ D + +E+++ R R+E + Sbjct: 168 VI----------GKGSKE--RYVPIGDFART-ALETYLEEGRKDLMAKERKEHFFVFVNH 214 Query: 146 ---AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAG 202 +T +R L++ ++ + ++ + PH RH++ H+L + + +Q L G Sbjct: 215 LGDPLTTNGVRYILEKLIQES-----GLTLKIHPHMLRHTFATHLLNNGADMRTVQELLG 269 Query: 203 HRDPRSMEVYTRVF--ALDMAATLAVPFTGDGRDAAE 237 H S ++YT V AL L P + G++ + Sbjct: 270 HVSLSSTQIYTHVTKEALQQNYQLYFPRSKAGKNEFD 306 >UniRef50_B2VB47 Putative integrases, DNA breaking-rejoining enzymes n=1 Tax=Erwinia tasmaniensis RepID=B2VB47_ERWT9 Length = 309 Score = 167 bits (423), Expect = 3e-40, Method: Composition-based stats. Identities = 92/281 (32%), Positives = 129/281 (45%), Gaps = 62/281 (22%) Query: 22 GVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARM 81 + L +R +A S YLL EVSAL+ Y +LF LWNTGMR+ EA Sbjct: 14 ARTLSCQLRMRSLAASMEGGVRYLLPVEVSALIGYAGSHEQKILFRLLWNTGMRVSEALA 73 Query: 82 LTPESFDL--------------------------------------------DGVRPFVR 97 LT L D + V Sbjct: 74 LTARDCILTQDDEVRLMRRRGARKSDAVTKGRPDGPLRDSGGSPLLPQVIPDDSYQAAVL 133 Query: 98 ILSEKVR---ARRGRPPKDE-------VRLVPLTDISYVRQMESW-----MITTRPRRRE 142 + S K A RG+P + E RL+PL D ++ ++S+ R E Sbjct: 134 VRSLKRHCGSATRGKPTEAERRAENAAKRLIPLLDPAFAADLKSYRDGVLFGPVRRALDE 193 Query: 143 PLWAVT-DETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALA 201 PLW V+ +++ NW+ AV RA ADGV FS+PV+PHTFRHSY M+ML +++ AL Sbjct: 194 PLWTVSSRQSVLNWINAAVTRAAADGVQFSVPVSPHTFRHSYAMYMLNAGVTDRLLMALM 253 Query: 202 GHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILRTL 242 GHR +++ +YTRVFALD + +PF D DA ++L+ + Sbjct: 254 GHRSLKTLGIYTRVFALDRLSGSYLPF--DCPDARDLLKNV 292 >UniRef50_A6H1H3 Integrase/recombinase n=2 Tax=Bacteria RepID=A6H1H3_FLAPJ Length = 347 Score = 167 bits (422), Expect = 4e-40, Method: Composition-based stats. Identities = 49/195 (25%), Positives = 87/195 (44%), Gaps = 13/195 (6%) Query: 34 MATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVR 93 + P L E+ +L + +H + + +++ G+R E L P D R Sbjct: 163 RPKRSKLLPNVLSKEEIKLILEAHSNIKHKTMLSLIYSCGLRRSELLHLKPTDID--SKR 220 Query: 94 PFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMR 153 V I K + R P ++ LV L + + +SW+ + P ++++++ Sbjct: 221 GIVIIRQSKGKKDRIAPLSPKI-LVMLREYYSNYKPKSWLFEGQI----PGETYSEKSLQ 275 Query: 154 NWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYT 213 N LKQA+ +A+ + PV+ H RHSY H+L + IQ L GH ++ E+YT Sbjct: 276 NVLKQALEKAK-----IAKPVSLHWLRHSYATHLLESGTDLRYIQELLGHSSTKTTEIYT 330 Query: 214 RVFALDMAATLAVPF 228 V ++ + PF Sbjct: 331 HVSTKNL-QQIKSPF 344 >UniRef50_Q0W0L4 Integrase n=2 Tax=Euryarchaeota RepID=Q0W0L4_UNCMA Length = 278 Score = 165 bits (417), Expect = 2e-39, Method: Composition-based stats. Identities = 48/188 (25%), Positives = 80/188 (42%), Gaps = 20/188 (10%) Query: 38 TGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVR 97 P YL E++ LL D R ++ L+ TG+R+ E + + D D V Sbjct: 104 DKKAPVYLTVSEMNDLLDTAIDTRDRIIVRLLYATGVRVSELVNIRKKDIDFDRCTIKVF 163 Query: 98 ILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLK 157 G+ K+ + LVP + V++M + + + L+ +T T++ +K Sbjct: 164 ----------GKGAKERIVLVP---ETVVKEMYDYAASL--SNDDRLFNLTPRTVQRDIK 208 Query: 158 QAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFA 217 Q RRA+ + VTPH RHS+ HML + IQ L GH + ++YT Sbjct: 209 QLARRAK-----INKNVTPHKLRHSFATHMLQNGGNVVAIQKLLGHSSLNTTQIYTHYNV 263 Query: 218 LDMAATLA 225 ++ Sbjct: 264 DELKEMYG 271 >UniRef50_C0WCK3 Recombinase n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCK3_9FIRM Length = 298 Score = 164 bits (414), Expect = 3e-39, Method: Composition-based stats. Identities = 47/197 (23%), Positives = 78/197 (39%), Gaps = 27/197 (13%) Query: 41 TPAYLLAPEVSAL-----LFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 P L EV+ L L R + ++ TGMR+ E L S +L Sbjct: 109 LPKVLSVDEVNRLFEAPDLDTPEGYRDRTMLEVMYATGMRVSELLALKVGSVNL------ 162 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP------RRREPLWAVTD 149 + G+ K+ RL+PL + + ++ ++ RP R + L+ Sbjct: 163 ----ASHYVIAYGKGAKE--RLIPLGHYA-IEYLKEYLSRVRPHFVKENRPCDDLFLTIR 215 Query: 150 ETM--RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPR 207 T R Q ++ VH + +TPH RHS+ HML + + +Q L GH D Sbjct: 216 GTGMTRQRFWQLIKNYGL-KVHIAKSLTPHILRHSFATHMLDNGADLRTVQELLGHSDIS 274 Query: 208 SMEVYTRVFALDMAATL 224 + ++YT + + A Sbjct: 275 TTQIYTHLTNHRLKAIY 291 >UniRef50_C3RQN8 Site-specific tyrosine recombinase xerD n=3 Tax=Bacteria RepID=C3RQN8_9MOLU Length = 302 Score = 163 bits (413), Expect = 4e-39, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 82/206 (39%), Gaps = 31/206 (15%) Query: 34 MATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESFD 88 + P L E+ +L + R+ + L+ TGMRI E LT + D Sbjct: 102 LPKRDKKLPIILSQEEMIEILDGIIVCDAISSRNRCMVELLYATGMRISELLNLTLK--D 159 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDIS---YVRQMESWMITTRPRRREPLW 145 L+ F++++ G+ K+ R++P+ + + + + L+ Sbjct: 160 LNIKMGFIKVI--------GKGNKE--RMIPIGSYVGEILEQYINDYRAEFNIKNDSLLF 209 Query: 146 A------VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQA 199 ++ E + L+ V + + V+PHTFRH++ H+L + + IQ Sbjct: 210 FNKHGQRLSREEFYSILQTIV-----NSTSITKKVSPHTFRHTFATHLLENGADLRSIQE 264 Query: 200 LAGHRDPRSMEVYTRVFALDMAATLA 225 L GH D + +YT + + + Sbjct: 265 LLGHSDISTTTIYTHISNQKIRSEYQ 290 >UniRef50_B8HGE6 Tyrosine recombinase XerD n=37 Tax=Actinobacteridae RepID=B8HGE6_ARTCA Length = 362 Score = 163 bits (412), Expect = 5e-39, Method: Composition-based stats. Identities = 51/203 (25%), Positives = 82/203 (40%), Gaps = 18/203 (8%) Query: 35 ATSTGATPAYLLAPEVSALLFYM-----PDQRHHMLFATLWNTGMRIGEARMLTPESFDL 89 + P + EV+ +L R L L++TG RI EA L + L Sbjct: 158 PMAGKRLPKAITVDEVTRILEAAGTDTATGLRDRALLEFLYSTGARISEAVGLDVDDISL 217 Query: 90 DGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP-----RRREPL 144 G + G+ K+ RLVPL R +E++++ RP + P Sbjct: 218 AGDDTEQ---GPAIVRLFGKGSKE--RLVPLGSYG-ARALEAYLVRGRPLLAAKGKGTPA 271 Query: 145 WAVTDETMRNWLKQA--VRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAG 202 + R + A + + A+ + + V+PHT RHS+ H+L +V+Q L G Sbjct: 272 LFLNARGGRISRQSAWTILKVAAEKANITRDVSPHTLRHSFATHLLEGGADVRVVQELLG 331 Query: 203 HRDPRSMEVYTRVFALDMAATLA 225 H + +VYT V A + A Sbjct: 332 HASVTTTQVYTLVTADTLREVYA 354 >UniRef50_UPI0001C41B06 tyrosine recombinase XerC n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41B06 Length = 326 Score = 163 bits (412), Expect = 5e-39, Method: Composition-based stats. Identities = 45/200 (22%), Positives = 77/200 (38%), Gaps = 25/200 (12%) Query: 28 ALSLRRMATSTGATPAYLLAPEVSALLFYMP------------DQRHHMLFATLWNTGMR 75 L + T + P L EV +L+ + R ++ L++TG+R Sbjct: 126 FLEDVQNPKRTKSLPKSLTEKEVKSLIDAVQITDEDSELKKKAKMRDKVILEFLYSTGLR 185 Query: 76 IGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMIT 135 I E L + D D E+ RG+ KD + L D + +++++ T Sbjct: 186 ISELVKLQKKDIDFD----------ERTIRVRGKGEKDRIVLF---DENTRDLIDNYIET 232 Query: 136 TRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRK 195 + + Q + + A+ VTPH RHS+ H+L + + Sbjct: 233 QNQKSEYLFINKNGRKLTPRYVQMMIKEYAEKAGIKKKVTPHVLRHSFATHLLKNGVDIR 292 Query: 196 VIQALAGHRDPRSMEVYTRV 215 VIQ L GH + ++YT V Sbjct: 293 VIQQLLGHSSLSTTQIYTNV 312 >UniRef50_A6TQC7 Phage integrase family protein n=3 Tax=Clostridia RepID=A6TQC7_ALKMQ Length = 354 Score = 163 bits (412), Expect = 6e-39, Method: Composition-based stats. Identities = 40/190 (21%), Positives = 78/190 (41%), Gaps = 24/190 (12%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGV 92 P L EV ++L + + +H + ++ G+R+GE L D D + Sbjct: 167 PRPKKEKTLPNILSQREVLSILDSVNNIKHKSILLLTYSAGLRVGEVVRLKVGDIDSDRM 226 Query: 93 RPFVRILSEKVRARRGRPPKDEVRLVP------LTDISYVRQMESWMITTRPRRREPLWA 146 + R+G+ KD ++ L + + + + W+ P +E + Sbjct: 227 ---------LIHVRQGKGRKDRYTILSEVALSTLRKYAMIEKPKDWLF---PGGKENCF- 273 Query: 147 VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDP 206 +T+ +++ A +RA+ + H+ RHS+ H+L + IQ L GH Sbjct: 274 LTERSVQKTFSVACKRAK-----VKKHASVHSLRHSFATHLLEGGTDLRYIQELLGHSSS 328 Query: 207 RSMEVYTRVF 216 ++ E+YT V Sbjct: 329 KTTEIYTHVS 338 >UniRef50_B1GYP8 Tyrosine recombinase XerD n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYP8_UNCTG Length = 294 Score = 163 bits (412), Expect = 6e-39, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 80/198 (40%), Gaps = 31/198 (15%) Query: 41 TPAYLLAPEVSALLFYMPDQ-----RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 P L EV LL + D R+ + L+ G+R+ E L +L+ F Sbjct: 109 LPDILTFDEVDLLLNSINDDDEMHIRNKAMLELLYAAGLRVSELINLKFSDINLEDC--F 166 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNW 155 +RI+ G+ K+ RLVP + + + I+ ++R P V D + Sbjct: 167 LRII--------GKGSKE--RLVPFGNKA------KFFISIYLKKRRPCLNVNDHIFISR 210 Query: 156 LKQAVRRAE--------ADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPR 207 L + + R E A V + +TPHT RHS+ H+L + +Q + GH Sbjct: 211 LGKKLSRIEFWRQLKNIAKNVGINKNITPHTLRHSFASHLLKGGADIRFVQEMLGHASIT 270 Query: 208 SMEVYTRVFALDMAATLA 225 + ++YT + + Sbjct: 271 TTQIYTHLDEDRIVQQHK 288 >UniRef50_B5YF74 Tyrosine recombinase XerD n=2 Tax=Dictyoglomus RepID=B5YF74_DICT6 Length = 296 Score = 162 bits (411), Expect = 7e-39, Method: Composition-based stats. Identities = 46/227 (20%), Positives = 94/227 (41%), Gaps = 35/227 (15%) Query: 24 DFATALSLRRMATSTGATPAYLLAPEVSALLF-----YMPDQRHHMLFATLWNTGMRIGE 78 +++ + + ++ P L E+ + L R+ + T + TG+R+ E Sbjct: 91 NYSNFMLIPKIPM---YLPEVLDPKEIESFLKIPDPLSPLGIRNMAILETFYATGIRVSE 147 Query: 79 ARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWM---IT 135 L ++ DL+ EK G+ K+ R+VPL D + V ++ ++ Sbjct: 148 LVNLNIQNVDLE----------EKYVRCFGKGEKE--RIVPLGDYA-VESLKRYLSVRHL 194 Query: 136 TRPRRREPLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLY 189 P+ +E L+ +T + + +K + + V+PHTFRHS+ H+L Sbjct: 195 FNPKDKEALFLNKKGERITRQGVWFIIKAYSKI-----LGLPKKVSPHTFRHSFATHLLS 249 Query: 190 HRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAA 236 + +++Q L GH D + ++YT + + + R+ Sbjct: 250 NGADIRIVQELLGHSDIATTQIYTHIVSSKLHEVYQRAHPLMRRNTK 296 >UniRef50_A8UM85 Tyrosine type site-specific recombinase n=2 Tax=unclassified Flavobacteriales (miscellaneous) RepID=A8UM85_9FLAO Length = 376 Score = 162 bits (411), Expect = 7e-39, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 69/185 (37%), Gaps = 13/185 (7%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGV 92 P L +V ++ + +H + + L+++G+R E L D Sbjct: 193 ERPRKAKKLPKVLSKEDVLKVITNTNNLKHKCIVSLLYSSGIRRNELIHLKISDID--SK 250 Query: 93 RPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETM 152 R +RI + KD L+ + ++ + + +P + + Sbjct: 251 RMLIRI-------DAAKGKKDRYTLL---SHALLKDLRDYYKQWKPEKYIFEGLYGKQYS 300 Query: 153 RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVY 212 + Q V+ A I VTPH RHS+ H+L + IQ L GH ++ E+Y Sbjct: 301 AQSVGQIVKNAAI-KARIQITVTPHMLRHSFATHLLEDGVDIRQIQVLLGHSSTKTTEIY 359 Query: 213 TRVFA 217 T V Sbjct: 360 THVAT 364 >UniRef50_Q1PZN1 Similar to site-specific tyrosine recombinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZN1_9BACT Length = 298 Score = 162 bits (410), Expect = 9e-39, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 85/208 (40%), Gaps = 30/208 (14%) Query: 28 ALSLRRMATSTGATPAYLLAPEVSALLFY-----MPDQRHHMLFATLWNTGMRIGEARML 82 + + + P ++ + LL + R + TL++TGMR+ E + Sbjct: 103 PVEQIKTPKTDKKLPGFMSVNDTEILLNQPDTCNLSGLRDKAIMETLYSTGMRVSELVGI 162 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRRE 142 D + RG+ K+ R++P+ + + + ++ ++ R E Sbjct: 163 NIADIDFHS----------GIVKVRGKGSKE--RILPVGNHA-LNAIQLYL-EKRKADNE 208 Query: 143 PLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 L+ +T+ ++ +++ +++A + V+PHTFRHS+ H+L + + Sbjct: 209 ALFLNKFHGRLTERSVARMIEKYMKKAAMH-----LRVSPHTFRHSFATHLLDNGADLRA 263 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATL 224 +Q GH + ++YT V + Sbjct: 264 VQEFLGHSSLSTTQIYTHVTTERLKQVY 291 >UniRef50_Q72SA5 Tyrosine recombinase xerD n=6 Tax=Leptospira RepID=XERD_LEPIC Length = 298 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 53/227 (23%), Positives = 89/227 (39%), Gaps = 41/227 (18%) Query: 15 SLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-----QRHHMLFATL 69 L P T +R + P YL E+ L + + R +F L Sbjct: 91 KKLDTNPTEKIETPEVMR-------SIPDYLTQDEIEELFASIKEDNLYELRDKCIFELL 143 Query: 70 WNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQM 129 +++G+RI EA L DL+G+ V G+ + RLVP + S + + Sbjct: 144 YSSGLRISEACNLRLNDMDLEGMTLTVE----------GKGGRQ--RLVPFGEKS-LDIL 190 Query: 130 ESWMITTRP-----RRREPLWA------VTDETMRNWLKQAVRRAEADGVHFSIPVTPHT 178 ++ +RP R E L+ + +++ L ++R VTPHT Sbjct: 191 NRYLKQSRPFILKSRNCEYLFVSKKGSYINRKSVWRLLNHYIKR-----TSILKKVTPHT 245 Query: 179 FRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLA 225 RHS+ H+L + K +Q L GH D + ++YT + + Sbjct: 246 LRHSFATHLLENHADLKSVQELLGHIDIATTQIYTHMANKTLREVHK 292 >UniRef50_Q5HFS5 Tyrosine recombinase xerD n=101 Tax=Firmicutes RepID=XERD_STAAC Length = 295 Score = 162 bits (409), Expect = 1e-38, Method: Composition-based stats. Identities = 49/209 (23%), Positives = 85/209 (40%), Gaps = 34/209 (16%) Query: 28 ALSLRRMATSTGATPAYLLAPEVSALLFY-----MPDQRHHMLFATLWNTGMRIGEARML 82 L P L EV ALL + R + L+ TGMR+ E L Sbjct: 94 PTVLLDSPKYDKKLPDVLNVDEVLALLETPDLNKINGYRDRTMLELLYATGMRVSELIHL 153 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRRE 142 E+ +L + FVR+ G+ K+ R+VPL D + + + +++ T RP+ + Sbjct: 154 ELENVNL--IMGFVRVF--------GKGDKE--RIVPLGD-AVIEYLTTYIETIRPQLLK 200 Query: 143 PLW-----------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHR 191 ++ + + +KQ + +TPHT RHS+ H+L + Sbjct: 201 KTVTEVLFLNMHGKPLSRQAIWKMIKQ-----NGVKANIKKTLTPHTLRHSFATHLLENG 255 Query: 192 QPRKVIQALAGHRDPRSMEVYTRVFALDM 220 + +Q + GH D + ++YT V + Sbjct: 256 ADLRAVQEMLGHSDISTTQLYTHVSKSQI 284 >UniRef50_Q04F60 Tyrosine recombinase XerD subunit n=9 Tax=Lactobacillales RepID=Q04F60_OENOB Length = 302 Score = 161 bits (408), Expect = 2e-38, Method: Composition-based stats. Identities = 45/203 (22%), Positives = 81/203 (39%), Gaps = 28/203 (13%) Query: 35 ATSTGATPAYLLAPEVSALLFYMPD------QRHHMLFATLWNTGMRIGEARMLTPESFD 88 P L A E+ A+L +PD R+ L T++ TG R+ E L D Sbjct: 107 PKKNSHLPQVLTATEIEAVL-AVPDISTTLGLRNRALLETMYATGFRVSEICNLKLA--D 163 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP----RRREPL 144 L + + G+ K R+VP+ ++S + + + +RP + P Sbjct: 164 LHDELGLITTI--------GKGQKQ--RIVPIGEMSLL-YISKYFKESRPILLKDKESPY 212 Query: 145 WAVTDET---MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALA 201 + D R + + V+ ++PHT RHS+ ++L + +++Q L Sbjct: 213 LFLNDHGHRISRQGIFKLVKEIAI-KAGIDKDISPHTLRHSFATNLLENGADLRIVQELL 271 Query: 202 GHRDPRSMEVYTRVFALDMAATL 224 GH D + ++YT V + Sbjct: 272 GHSDISTTQIYTHVSQKHIREQY 294 >UniRef50_B6YWN8 Probable tyrosine recombinase xerC-like n=9 Tax=Thermococcaceae RepID=XERCL_THEON Length = 282 Score = 161 bits (407), Expect = 2e-38, Method: Composition-based stats. Identities = 52/205 (25%), Positives = 84/205 (40%), Gaps = 30/205 (14%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMP--DQRHHMLFATLWNTGMRIGEARMLT 83 A LR + P L EV +L +P +R ++F L+ G+R+ E L Sbjct: 82 EEAEKLRP-PKVPKSLPKSLTREEVRKILSVIPPTKKRDRLIFLLLYGAGLRVSELCNLK 140 Query: 84 PESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR---- 139 D + V R G+ KD V +P + +++++ T Sbjct: 141 KSDVDFERSLIIV---------RGGKGAKDRVVPIP---AFLLEGIKAYLETRDDDSEYL 188 Query: 140 ----RREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRK 195 RRE ++ +T+ LK+ RA I VTPH RHS+ HML + + Sbjct: 189 IVEDRRERKDKLSPKTVWYLLKKYGDRA-------GIRVTPHMLRHSFATHMLENGVDIR 241 Query: 196 VIQALAGHRDPRSMEVYTRVFALDM 220 IQ L GH + + ++YT+V + Sbjct: 242 AIQELLGHSNLSTTQIYTKVTVEHL 266 >UniRef50_D2MQ50 Phage integrase, N-terminal SAM domain protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MQ50_9FIRM Length = 297 Score = 160 bits (406), Expect = 2e-38, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 87/219 (39%), Gaps = 23/219 (10%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQR-----HHMLFATLWNTGMRIGEAR 80 +SL ++ + P++L EV LL + + ++ G+RI E Sbjct: 92 ENPVSLIQVRKNETYLPSFLSVEEVKQLLNSFTRDDPKQELNRTILELIYACGLRISELC 151 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP-- 138 LT L+ + G+ K+ R+VP+ + V+ ++ ++ RP Sbjct: 152 SLTVAQVQLE----------TGILRILGKGNKE--RIVPIPNQ-VVKDLDYYLNLIRPIW 198 Query: 139 -RRREPLWAVTDETMRNWLK--QAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRK 195 + + + + R + Q + + +A F +TPH+ RH+Y H+L + Sbjct: 199 NQHKTNTFFINHLGNRITARSIQLLLKQKAMECGFQKDITPHSLRHTYATHLLQAGADLR 258 Query: 196 VIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 +IQ L GH + ++ E+YT V + + Sbjct: 259 IIQELLGHSNIKTTEIYTHVQNRQLFEAYQNFHPLSKKK 297 >UniRef50_B5YFC5 Recombinase n=2 Tax=Dictyoglomus RepID=B5YFC5_DICT6 Length = 301 Score = 160 bits (406), Expect = 3e-38, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 82/213 (38%), Gaps = 21/213 (9%) Query: 33 RMATSTGATPAYLLAPEVSALLFY-----MPDQRHHMLFATLWNTGMRIGEARMLTPESF 87 + P +L EV LL + R + TL+ TG+R+ E + E Sbjct: 100 PTPKAEKKLPQFLSVDEVMKLLNSPSLDDLIGIRDRAIIETLYATGIRVSELVGMNEEDI 159 Query: 88 DLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAV 147 + + V G+ K+ + +V + ++ + + ++ E + + Sbjct: 160 NWNYGEIRVF----------GKRAKERIVIVGEETLKILQLYKDHVRPKLLKKPEKAFFL 209 Query: 148 TDETMR---NWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHR 204 + R ++ +++ D F+ V+PHT RH++ H+L + +Q L GH Sbjct: 210 NAKGGRISDRAIRMIIKKYTKD---FNKKVSPHTLRHTFATHLLEGGADLRYVQELLGHV 266 Query: 205 DPRSMEVYTRVFALDMAATLAVPFTGDGRDAAE 237 + ++YT + + + T + + + Sbjct: 267 RISTTQIYTHLTSEQIRKTYTLSHPRAIKKETK 299 >UniRef50_Q71Y59 Tyrosine recombinase xerD n=19 Tax=Firmicutes RepID=XERD_LISMF Length = 297 Score = 160 bits (406), Expect = 3e-38, Method: Composition-based stats. Identities = 45/208 (21%), Positives = 75/208 (36%), Gaps = 35/208 (16%) Query: 35 ATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESFDL 89 P L +V LL R + L+ TG+R+ E L + L Sbjct: 102 PKQAQGLPKVLNLDDVEKLLSSSDTSTPLGLRDQAMMEILYATGLRVTELVSLKMDDLHL 161 Query: 90 DGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWA--- 146 G+ K+ R++PL + +E ++ RP+ R P + Sbjct: 162 HM----------GFIQTIGKGDKE--RIIPLGKTA-TTVLEKYLEEARPKLRRPKYRNDF 208 Query: 147 ---------VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVI 197 +T + LK + + P+TPHT RHS+ H+L + + + Sbjct: 209 VFLNHHGQGLTRQGFWKILKGIAKES-----GIEKPITPHTLRHSFATHLLENGADLRSV 263 Query: 198 QALAGHRDPRSMEVYTRVFALDMAATLA 225 Q L GH D + ++YT V L + Sbjct: 264 QELLGHADISTTQIYTHVTKLRLKDVYK 291 >UniRef50_C0VHG1 Site-specific tyrosine recombinase n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VHG1_9GAMM Length = 306 Score = 160 bits (406), Expect = 3e-38, Method: Composition-based stats. Identities = 52/206 (25%), Positives = 86/206 (41%), Gaps = 25/206 (12%) Query: 28 ALSLRRMATSTGATPAYLLAPEVSALLFY-----MPDQRHHMLFATLWNTGMRIGEARML 82 ++ A P L +V AL+ R +F L+ G+R+ E L Sbjct: 106 PVASHHSPKIGRALPKDLSEQDVEALINAPDISTTLGLRDRAMFEVLYACGLRVSELLNL 165 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR--- 139 E +L + FVRI G+ K+ RLVPL + +E ++ +RP+ Sbjct: 166 RLELINL--KQGFVRIT--------GKGNKE--RLVPLGQYA-CDWIEKYLAESRPQLYK 212 Query: 140 -RREPLWAVTDETM--RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 + L+ + R A++R + ++PHT RH++ H+L H +V Sbjct: 213 SNTDYLFLTQHGGIMSRQNFWYAIKRYALQA-NIQAELSPHTLRHAFATHLLNHGADLRV 271 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAA 222 +Q L GH D + ++YT V M A Sbjct: 272 VQMLLGHSDLSTTQIYTHVAQHRMQA 297 >UniRef50_UPI0001C4241D integrase/recombinase n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4241D Length = 321 Score = 160 bits (404), Expect = 5e-38, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 78/210 (37%), Gaps = 34/210 (16%) Query: 34 MATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESFD 88 + P++L E+ L D+R + L+ TGMR+GE L D Sbjct: 124 LPKQASKLPSFLYEEEMDELFKAFEGNTPLDKRDRAILELLYATGMRVGECSQLDVADID 183 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMITTRPRRRE 142 L FV +G+ K+ R VP+ + Y+ ++ + Sbjct: 184 LRIGTAFV----------KGKGNKE--RYVPIGSFACDALHEYIEDARVNLLKKGNSETK 231 Query: 143 PLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 L+ +TD ++R L + V A + PH RHS+ H+L + +V Sbjct: 232 RLFLNYRGGPLTDRSIRRMLAKRVEEA-----SMQKHIRPHDLRHSFATHLLNNGADLRV 286 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATLAV 226 +Q L GH + +VYT V + Sbjct: 287 VQELLGHEHLSTTQVYTHVTKDRLREVYKN 316 >UniRef50_D2RKG6 Tyrosine recombinase XerD n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RKG6_ACIFE Length = 301 Score = 160 bits (404), Expect = 5e-38, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 78/196 (39%), Gaps = 29/196 (14%) Query: 41 TPAYLLAPEVSALLFYMPDQ------RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRP 94 P + EV L PD R + ++ TGMR+ E L S +L+ Sbjct: 112 LPKVMSLEEVKQLFSA-PDLTQPEGFRDRTMLEVMYATGMRVSELLSLKRASVNLE---- 166 Query: 95 FVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP------RRREPLWAVT 148 + G+ K+ RL+PL + ++ ++ ++ RP + + L+ Sbjct: 167 ------TRYVIAYGKGAKE--RLIPLGQYA-IQYLKKYLAQVRPLFVKNGKDDDSLFLTI 217 Query: 149 DETM--RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDP 206 T R Q + RA P+TPH RHS+ HML + + +Q L GH D Sbjct: 218 RGTGMTRQRFWQII-RAYGVKAGLQKPLTPHILRHSFATHMLDNGADLRTVQELLGHADI 276 Query: 207 RSMEVYTRVFALDMAA 222 + ++YT + + Sbjct: 277 STTQIYTHLTNNRLKK 292 >UniRef50_A8F7B4 Tyrosine recombinase xerC n=1 Tax=Thermotoga lettingae TMO RepID=XERC_THELT Length = 286 Score = 159 bits (403), Expect = 5e-38, Method: Composition-based stats. Identities = 48/188 (25%), Positives = 83/188 (44%), Gaps = 14/188 (7%) Query: 33 RMATSTGATPAYLLAPEVSALLF-YMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDG 91 R P +LL E+ LL M +QR +++ + L+ G+R+ E L E DL Sbjct: 100 RNPKIRRRIPDFLLPSEIQKLLEFSMKNQRDYLMLSLLYFCGLRVSELCNLRVE--DLSF 157 Query: 92 VRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDET 151 FV+I G+ KD R+VPLT ++E+++ + + L+ + Sbjct: 158 SPAFVKITM-------GKGKKD--RIVPLTS-KLAEKLENYITSCGKSPEDYLFGSQIKI 207 Query: 152 MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEV 211 + + + VR+ + PHT RH++ H+L +V+Q L GH + + V Sbjct: 208 HPSTVFRIVRKYTMM-CGIKKRIHPHTLRHTFATHLLQKGVNIRVVQDLLGHSNLSTTSV 266 Query: 212 YTRVFALD 219 Y V + Sbjct: 267 YLHVVDQE 274 >UniRef50_C2KPQ6 Tyrosine recombinase n=2 Tax=Mobiluncus mulieris RepID=C2KPQ6_9ACTO Length = 319 Score = 159 bits (403), Expect = 6e-38, Method: Composition-based stats. Identities = 49/205 (23%), Positives = 77/205 (37%), Gaps = 24/205 (11%) Query: 35 ATSTGATPAYLLAPEVSALLFYM------PDQRHHMLFATLWNTGMRIGEARMLTPESFD 88 A P L E+ ALL R L L+ +G RI EA L + D Sbjct: 118 AKLPRRLPETLSLEEMEALLAAASSPGDSNSLRDRALLEFLYASGARISEAMNLVLDDID 177 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP-------RRR 141 + VR+ G+ K+ R+ L + + ++++++ RP R Sbjct: 178 FETEPALVRLF--------GKGRKE--RISMLGHQA-CQALQAYLVRVRPTLAEKGQSRG 226 Query: 142 EPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALA 201 + M A+ +A A PV PHT RH + H+L +V+Q L Sbjct: 227 RVFLNTYGKPMSRQTAWAIIQAAAKRAQIDRPVHPHTLRHCFATHLLQGGADIRVVQELL 286 Query: 202 GHRDPRSMEVYTRVFALDMAATLAV 226 GH + E+YT+V + A Sbjct: 287 GHASVTTTEIYTKVSKQMLLEVYAS 311 >UniRef50_B1VH11 Integrase/recombinase n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VH11_CORU7 Length = 303 Score = 159 bits (403), Expect = 6e-38, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 85/201 (42%), Gaps = 37/201 (18%) Query: 34 MATSTGATPAYLLAPEVSALLFYMPDQ--------RHHMLFATLWNTGMRIGEARMLTPE 85 + P L EV+A+L P+ R L L++TG R+ E L + Sbjct: 106 RPGQAASIPKALSIAEVTAILESCPNDDAASLIQIRDRALLEMLYSTGARVSELLGLDVD 165 Query: 86 SFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP---RRRE 142 D +EK+ RG+ K+ R+VP+ D + + ++ +++ RP ++ Sbjct: 166 DVD----------PTEKLIIVRGKGSKE--RVVPVGDPA-LDALQHYLVRVRPAFNKKGS 212 Query: 143 PLWAVTDETMR-------NWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRK 195 + R N + +A G V+PH+FRHS+ H+L + Sbjct: 213 AALFLNRNGGRMGRQSAFNMVSSVSEKAGVAG------VSPHSFRHSFATHLLEGGADIR 266 Query: 196 VIQALAGHRDPRSMEVYTRVF 216 V+Q L GH + + ++YT+V Sbjct: 267 VVQELLGHSNVVTTQIYTKVS 287 >UniRef50_C1SMP5 Site-specific recombinase XerD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMP5_9BACT Length = 295 Score = 159 bits (402), Expect = 7e-38, Method: Composition-based stats. Identities = 52/201 (25%), Positives = 86/201 (42%), Gaps = 24/201 (11%) Query: 35 ATSTGATPAYLLAPEVSALLFYMPDQ------RHHMLFATLWNTGMRIGEARMLTPESFD 88 + P +L EV L+ PD R ++F T+++TGMRI E L D Sbjct: 99 PSKWEKLPVFLNFDEVEKLINS-PDMSSGLGYRDRIIFETMYSTGMRISELVGLKV--LD 155 Query: 89 LDGVRPFVRILSEKVRAR----RGRPPKDEVRLVPLTDISYVRQM-ESWMITTRPRRREP 143 +D R +++ + + R G + + + S V++ E W+ +R ++ Sbjct: 156 MDMHREIMKVTGKGSKQRFVPMYGSLAEKMKTYLDIRHDSLVKERDEGWLFLSRNGKK-- 213 Query: 144 LWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 + E + +K+ RA V+PHT RHS+ H+L + + IQ L GH Sbjct: 214 ---LDREYVWMIIKKYCERA-----GIKKNVSPHTLRHSFATHLLTNGADLRTIQVLLGH 265 Query: 204 RDPRSMEVYTRVFALDMAATL 224 D + E YT+V TL Sbjct: 266 VDLSTTERYTQVTDNKARNTL 286 >UniRef50_D0BKQ9 Tyrosine recombinase XerD n=2 Tax=Firmicutes RepID=D0BKQ9_9LACT Length = 297 Score = 159 bits (402), Expect = 8e-38, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 74/210 (35%), Gaps = 35/210 (16%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESF 87 ++ + P L EV+ +L R + L+ TGMR+ E L Sbjct: 98 KVPKKSKMLPKALTVDEVTQVLNSCDTSTVLGLRDKAMLELLYATGMRVSELITLKLSDL 157 Query: 88 DLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAV 147 L+ G+ K R++P+ + ++ ++ R + V Sbjct: 158 HLE----------LGFLQTIGKGNKQ--RIIPIGQAA-TNWVQHYLTYARVVLEQESNPV 204 Query: 148 ------------TDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRK 195 T + LK+ V+ A V+PHT RHS+ H+L + Sbjct: 205 EYLFLNHRGNGFTRQGFWKNLKKIVQEA-----GVHKDVSPHTLRHSFATHILEAGADLR 259 Query: 196 VIQALAGHRDPRSMEVYTRVFALDMAATLA 225 ++Q L GH D + ++YT + M Sbjct: 260 IVQELLGHSDISTTQIYTHLTNERMKEIYQ 289 >UniRef50_A4C321 Tyrosine type site-specific recombinase n=4 Tax=Bacteroidetes/Chlorobi group RepID=A4C321_9FLAO Length = 374 Score = 159 bits (402), Expect = 8e-38, Method: Composition-based stats. Identities = 47/200 (23%), Positives = 83/200 (41%), Gaps = 22/200 (11%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGV 92 P L E+ A+ + + +H L + L++ G+RIGEA +T E D+D Sbjct: 189 ERPRKEKKLPIILSGAEIKAIFSTITNLKHKALLSLLYSAGLRIGEA--ITLEVTDIDCQ 246 Query: 93 RPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR----REPLWAVT 148 R + R+ + KD L+ +++ + + + RP+ + Sbjct: 247 RMLIY-------GRQAKGKKDRYTLL---SPVFLKILRDYYVAYRPKNSLFEGANGSTYS 296 Query: 149 DETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRS 208 D + + LK A+ +A T H+ RHS+ H+L + IQ L GH P++ Sbjct: 297 DASAQKVLKNALFKA-----GIRKKATLHSLRHSFATHLLEKGTDIRYIQELLGHSSPKT 351 Query: 209 MEVYTRVFALDMAATLAVPF 228 +YT V + + PF Sbjct: 352 TMIYTHVTQTSLKK-IKNPF 370 >UniRef50_D1N8W9 Tyrosine recombinase XerD n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N8W9_9BACT Length = 299 Score = 159 bits (401), Expect = 1e-37, Method: Composition-based stats. Identities = 51/199 (25%), Positives = 84/199 (42%), Gaps = 29/199 (14%) Query: 41 TPAYLLAPEVSALLFYMP-------DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVR 93 P +L EV A L P + R+ + L+++G+R+ E L + D D Sbjct: 108 LPDFLSEAEVDAFLKAFPASVKEPFEMRNRAILEVLYSSGLRVSELARLPLTAVDFDNEL 167 Query: 94 PFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP-----RRREPLWAVT 148 V G+ K R+VP+ ++ +R + ++ RP R P ++ Sbjct: 168 LRVV----------GKGSK--TRIVPIGKVA-LRTLRRYLADVRPLLAEKNPRSPYVFLS 214 Query: 149 DETM---RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRD 205 R W+ V+ A A + PHT RHS+ H+L H +VIQ + GH D Sbjct: 215 KSGRPLNREWIWNVVKVAAARA-GIHKNIHPHTLRHSFASHLLAHGADLRVIQEMLGHAD 273 Query: 206 PRSMEVYTRVFALDMAATL 224 + E+YT + + +AA Sbjct: 274 ISTTEIYTHIDSNRLAAIH 292 >UniRef50_UPI0001698363 tyrosine recombinase XerD n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698363 Length = 227 Score = 158 bits (400), Expect = 1e-37, Method: Composition-based stats. Identities = 44/205 (21%), Positives = 88/205 (42%), Gaps = 34/205 (16%) Query: 28 ALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARML 82 + + + + P + + E+ L+ + R+ + TL+ G+R+ E + Sbjct: 27 PVKNIDIPKTGLSLPEVISSKEMELLIDSVDTKNPRGLRNAAMLETLYGAGLRVSELVSM 86 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRRE 142 E+ +L+ F+RI G+ K+ R+VP+ + + ++ +W++ RP + Sbjct: 87 KMENINLEAS--FIRIF--------GKGSKE--RIVPIGSFA-IEKVRNWIMHGRPIILK 133 Query: 143 PL-----------WAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHR 191 + +T + LK+ R S +TPHTFRHS+ H+L Sbjct: 134 NIPSHYLFVARAGKPMTRQGFWKLLKKYSR-----ASGISKKITPHTFRHSFATHLLEGG 188 Query: 192 QPRKVIQALAGHRDPRSMEVYTRVF 216 + +Q + GH D + ++YT V Sbjct: 189 ADLRSVQTMLGHSDISTTQIYTHVS 213 >UniRef50_A8RBU2 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RBU2_9FIRM Length = 302 Score = 158 bits (399), Expect = 2e-37, Method: Composition-based stats. Identities = 46/208 (22%), Positives = 80/208 (38%), Gaps = 35/208 (16%) Query: 33 RMATSTGATPAYLLAPEVSALLFY-----MPDQRHHMLFATLWNTGMRIGEARMLTPESF 87 + P +L E+ L M R +F ++ G+R+ EA L Sbjct: 105 KTPKIAKRIPEFLFYDEIEIFLESFDLNSMQGLRDRTMFELMYACGLRVSEAVSLRTRDV 164 Query: 88 DLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAV 147 D ++ + G+ K+ RLVP D++ + S++ R +WA Sbjct: 165 DF----------ADNILHIHGKGDKE--RLVPFYDLAK-ELLVSYIKDVR-----DVWAT 206 Query: 148 TDETMRNWLKQAVRRAEADGVH-----------FSIPVTPHTFRHSYIMHMLYHRQPRKV 196 +DET ++ Q ++ GV + V PH FRHS+ H+L + + Sbjct: 207 SDETAL-FVNQRGKKLTTRGVQYLMNKAVEKCDLHVHVHPHMFRHSFATHLLDNGADLRY 265 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATL 224 +Q L GH + ++Y V + A Sbjct: 266 VQELLGHSSLSTTQIYVHVSKERLKAAY 293 >UniRef50_D0GL18 Tyrosine recombinase XerD n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GL18_9FUSO Length = 315 Score = 158 bits (399), Expect = 2e-37, Method: Composition-based stats. Identities = 44/212 (20%), Positives = 85/212 (40%), Gaps = 19/212 (8%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYM----PDQRHHMLFATLWNTGMRIGEARM 81 + + P L EV ++ + R ++ L TG R+ E Sbjct: 116 EDPTGMIKSLKREKRLPEVLNLKEVKTIIDNIGHTPEGMRDRLIIKFLIATGARVSEILN 175 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRR 141 L + + G F+++L G+ K R+VP+ + S +++ ++ RP+ + Sbjct: 176 LNIKDVENQGYE-FIKVL--------GKGSK--YRIVPIYE-SLENEIKDYISNYRPKLK 223 Query: 142 --EPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQA 199 E + + +T R + +++ D V PH FRHS +L + +++Q Sbjct: 224 GSESSFKLFPDTRRENFWKRLKKTAKDA-GIEKNVYPHIFRHSVATVLLSNGADIRIVQE 282 Query: 200 LAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 + GH + + E+YT V D+ GD Sbjct: 283 ILGHANISTTEIYTHVEKSDLKRIYNKIKIGD 314 >UniRef50_C9RQE0 Integrase family protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQE0_FIBSS Length = 297 Score = 158 bits (399), Expect = 2e-37, Method: Composition-based stats. Identities = 49/187 (26%), Positives = 75/187 (40%), Gaps = 27/187 (14%) Query: 39 GATPAYLLAPEVSALLFYMPD----QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRP 94 P YL E+ ++ + R L +++ G+RI EA + DL+ Sbjct: 108 HYLPQYLTREEIDSVFESAANGKNPLRDTALIELMYSGGLRISEALGIKLSQIDLENEWL 167 Query: 95 FVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRN 154 G+ K RLVPL + + +W+ RP TD + N Sbjct: 168 ----------MPIGKGNKQ--RLVPLGSKAK-ENLRAWIEEGRPLTH----PTTDNIILN 210 Query: 155 WLKQAVRRAEADGV------HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRS 208 + + R A + H S V+PHTFRHS+ H L +V+Q L GH D + Sbjct: 211 AHGKPMSRMGAWKIVQLHTMHLSKQVSPHTFRHSFATHCLEAGMDLRVLQELLGHADIST 270 Query: 209 MEVYTRV 215 ++YT V Sbjct: 271 TQIYTHV 277 >UniRef50_D2BHG9 Site-specific recombinase n=5 Tax=Dehalococcoides RepID=D2BHG9_DEHSV Length = 307 Score = 158 bits (399), Expect = 2e-37, Method: Composition-based stats. Identities = 49/216 (22%), Positives = 86/216 (39%), Gaps = 33/216 (15%) Query: 13 RVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD------QRHHMLF 66 R L+ P ++ ++ +R P +L EVS LL MPD R Sbjct: 86 REGLIQKNPTLNASSPRLDKR-------LPEFLTTAEVSKLL-RMPDSSTPQGLRDKAFM 137 Query: 67 ATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYV 126 L+ +G+R+ E L E+ DL + V G+ K+ + L+ L + Sbjct: 138 ELLYASGLRVSELVKLDIENLDLHSHQIRVW----------GKGSKERIVLMGLP---AI 184 Query: 127 RQMESWMITTRP----RRREPLWAVTDETMRNWLKQAVRRAEADG--VHFSIPVTPHTFR 180 + +++++ RP +R P + R + R + V PH R Sbjct: 185 QSIQTYLNLGRPLLKGKRNTPALFLNPNGGRLSARSFQERLDKLAHQAGIEKHVHPHMLR 244 Query: 181 HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVF 216 H++ H+L +V+Q L GH + + ++YT V Sbjct: 245 HTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVT 280 >UniRef50_A8YV25 Integrase/recombinase n=13 Tax=Lactobacillus RepID=A8YV25_LACH4 Length = 301 Score = 157 bits (398), Expect = 2e-37, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 87/211 (41%), Gaps = 26/211 (12%) Query: 28 ALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARML 82 + + P L E++ LL R + TL+ TGMR+ E L Sbjct: 98 PMLEIDLPKKERRLPVALNQKEINDLLAQPDIKRKLGLRDRAILETLYATGMRVSELINL 157 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMITT 136 + DL VR+L G+ K+ RL+P++ ++ Y +++ +I Sbjct: 158 ELQ--DLHEDLGLVRVL--------GKGSKE--RLIPISSVALHWIKQYQKEVRDPLILK 205 Query: 137 RPRRREPLWAVTD--ETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPR 194 + E ++ + + R + Q +++ + VTPHT RH++ H+L + Sbjct: 206 AGQNDEHIFLNSRAKQLTRQAIWQMIKKY-CQSAGITKDVTPHTLRHTFATHLLENGADL 264 Query: 195 KVIQALAGHRDPRSMEVYTRVFALDMAATLA 225 +V+Q + GH D + ++YT + + Sbjct: 265 RVVQEILGHSDISTTQIYTNLSQKHILQVYQ 295 >UniRef50_C0QJ38 Site-specific recombinase XerD (DNA replication, recombination and repair) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ38_DESAH Length = 297 Score = 157 bits (398), Expect = 3e-37, Method: Composition-based stats. Identities = 49/212 (23%), Positives = 86/212 (40%), Gaps = 31/212 (14%) Query: 23 VDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIG 77 V+ A +S ++ S P +L E+ LL + D+R+ +F ++TGMR+ Sbjct: 100 VNPAQGVSAPKLPRS---IPQFLTVDELFTLLDSIKTRTVVDKRNRAVFELFYSTGMRVS 156 Query: 78 EARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR 137 E L D + + RG+ ++ RLVP+ D + ++ ++ + Sbjct: 157 ELSNLNVGDIDRES----------HLVRVRGKGNRE--RLVPVGDRA-LKAVDDYRTCID 203 Query: 138 PRRREPLW-----AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQ 192 +D ++R L V+ +PV+PHT RHS+ HML Sbjct: 204 GEFGALFLNRDAHRFSDSSIRRVLSVLVK-----ACGLGVPVSPHTLRHSFATHMLDAGA 258 Query: 193 PRKVIQALAGHRDPRSMEVYTRVFALDMAATL 224 + IQ + GH S ++YT V + Sbjct: 259 DLRGIQEILGHASLSSTQIYTHVTYARLMEVY 290 >UniRef50_Q2LSM9 Integrase/recombinase n=6 Tax=Bacteria RepID=Q2LSM9_SYNAS Length = 296 Score = 157 bits (397), Expect = 3e-37, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 34/210 (16%) Query: 28 ALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARML 82 ++ +A P L E+ LL R + ++ TG+R+ E L Sbjct: 95 PVAEIELAKVWMRLPDTLSHEEMDQLLSQPGVRTDSAIRDTAMLELMYATGLRVSELISL 154 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR--- 139 T S + V +G+ K+ R+VP+ ++Y + + RP+ Sbjct: 155 TTGSINWQVGYLVV----------QGKGNKE--RIVPIGQVAY-EHVRRYFDEVRPKCIR 201 Query: 140 --------RREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHR 191 + +T + +++ +A V PHTFRHS+ H+L Sbjct: 202 GAQTNVLFLNKSGQGMTRQGFWKLVRKYAVKA-----GLQKKVHPHTFRHSFASHLLEGG 256 Query: 192 QPRKVIQALAGHRDPRSMEVYTRVFALDMA 221 + +Q + GH D + ++YT V + Sbjct: 257 ADLRSVQMMLGHADISTTQIYTHVTREHLK 286 >UniRef50_B9YCM7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCM7_9FIRM Length = 304 Score = 157 bits (396), Expect = 4e-37, Method: Composition-based stats. Identities = 46/196 (23%), Positives = 80/196 (40%), Gaps = 20/196 (10%) Query: 37 STGATPAYLLAPEVSALL----FYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGV 92 T + P Y E+ ++ D R H + L+ G+R+ E LT DL+ Sbjct: 103 RTQSLPVYCTRDEIEKIMAQFGHSPKDIRWHAIAELLYGCGLRVSECAALTMNQVDLEL- 161 Query: 93 RPFVRILSEKVRARRGRPPKDEVRLV----PLTDISYVRQMESWMITTRPRRREPLWAVT 148 +RI + + R PK +++V Y ++ SW+ TR ++ T Sbjct: 162 -GMLRIWGKGNKERLVPMPKQTIKIVREYVDTVRPLYQKKPTSWLFITRLGKK-----TT 215 Query: 149 DETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRS 208 ++ + +K +A P+TPH RH+Y HML + +Q L GH D + Sbjct: 216 TASIESMIKSVCIQA-----GIQKPITPHKLRHTYATHMLEGGADLRSVQELLGHSDITT 270 Query: 209 MEVYTRVFALDMAATL 224 ++YT + + Sbjct: 271 TQIYTHIDRSRLRTAY 286 >UniRef50_Q3Z771 Tyrosine recombinase XerD n=5 Tax=Dehalococcoides RepID=Q3Z771_DEHE1 Length = 302 Score = 156 bits (395), Expect = 5e-37, Method: Composition-based stats. Identities = 48/203 (23%), Positives = 83/203 (40%), Gaps = 35/203 (17%) Query: 39 GATPAYLLAPEVSALL------FYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGV 92 P + +V ALL +R + L+ +GMR+ E L D+D Sbjct: 110 KPLPDAISISQVRALLNQPVKSGSSEAKRDKAMLELLYASGMRVTELVNLNV--LDVDLK 167 Query: 93 RPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP-----RRREPLW-- 145 FVR G+ K+ R++P+ + + ++ ++ RP + L+ Sbjct: 168 EGFVRCF--------GKGRKE--RMIPIYPQA-AQSIQEYLTEIRPNLVRAETEKALFLN 216 Query: 146 ----AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALA 201 +T + + LK R A D V VTPHT RHS+ HML + +Q L Sbjct: 217 RRGDRLTRQGLWQILKGYAREAGLDDV-----VTPHTLRHSFATHMLSGGADLRSVQELL 271 Query: 202 GHRDPRSMEVYTRVFALDMAATL 224 GH + + ++YT + + + + Sbjct: 272 GHANISTTQIYTHLTSEHIKRSY 294 >UniRef50_A3M1C2 Site-specific tyrosine recombinase n=15 Tax=Moraxellaceae RepID=A3M1C2_ACIBT Length = 306 Score = 156 bits (395), Expect = 5e-37, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 85/210 (40%), Gaps = 33/210 (15%) Query: 28 ALSLRRMATSTGATPAYLLAPEVSALLFY-----MPDQRHHMLFATLWNTGMRIGEARML 82 ++ A P L +V AL+ R +F L+ G+R+ E L Sbjct: 106 PVATHHSPKIGRALPKDLSEEDVEALIQAPDITTALGLRDRAMFEVLYACGLRVSELLNL 165 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR--- 139 E +L + ++RI G+ K+ RLVPL + +E ++ RP+ Sbjct: 166 RLELINL--KQGYLRIT--------GKGNKE--RLVPLGQYA-CDWVERYLNEARPQLYK 212 Query: 140 -RREPLWA------VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQ 192 + L+ ++ + +K +A ++PHT RH++ H+L H Sbjct: 213 SSTDYLFLTQHGGIMSRQNFWYAIKHYALQANIQA-----ELSPHTLRHAFATHLLNHGA 267 Query: 193 PRKVIQALAGHRDPRSMEVYTRVFALDMAA 222 +V+Q L GH D + ++YT V + M Sbjct: 268 DLRVVQMLLGHSDLSTTQIYTHVAQVRMQQ 297 >UniRef50_Q0AZB8 Tyrosine recombinase XerD subunit n=2 Tax=Firmicutes RepID=Q0AZB8_SYNWW Length = 296 Score = 156 bits (395), Expect = 6e-37, Method: Composition-based stats. Identities = 49/225 (21%), Positives = 84/225 (37%), Gaps = 41/225 (18%) Query: 17 LPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWN 71 L P D T R+ P L EV L+ R + ++ Sbjct: 91 LDKNPSSDLETPKIKRK-------LPQVLSIEEVDKLMEQPNPVVPLGIRDRAMLELMYG 143 Query: 72 TGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMES 131 TG+R+ E L E DL+ F+R + G+ K+ R++P+ S + ++ Sbjct: 144 TGIRVSELLSLQVE--DLNPTAGFLRCM--------GKGRKE--RIIPVNQTS-IDWVQR 190 Query: 132 WMITTR------PRRREPLW-----AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFR 180 ++ R P R ++ + L V +AE VTPHT R Sbjct: 191 YLARVRNSLVKNPLERTLFLNARGRPLSRQGFFKILGNYVEKAE-----LEKEVTPHTLR 245 Query: 181 HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLA 225 HS+ H+L + + +Q + GH D + ++YT + + Sbjct: 246 HSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKSRLREVYQ 290 >UniRef50_C0QVM8 Site-specific recombinase XerD n=3 Tax=Brachyspira RepID=C0QVM8_BRAHW Length = 297 Score = 156 bits (394), Expect = 6e-37, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 78/196 (39%), Gaps = 24/196 (12%) Query: 41 TPAYLLAPEVSALL-----FYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 P L EV LL R +F ++++G+R+ E L + +G Sbjct: 100 LPESLTDTEVDDLLAVHNEKTDKGLRDKAIFELMYSSGLRVSEICSLKIDDIFFEGKYLK 159 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMITTRPRRREPLWAVTD 149 + G+ ++ R+VP+ D + Y++ M+ + L D Sbjct: 160 IC----------GKGKRE--RIVPINDRALDILQRYIQTSRVIMVKGKKTSELFLNFRGD 207 Query: 150 ETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSM 209 + R + + V+ A + PHT RHS+ H++ H + +Q + GH D + Sbjct: 208 KISRVGIWKIVKEAMK-KSKIEKNIYPHTLRHSFATHLIQHGADLRAVQRMLGHSDITTT 266 Query: 210 EVYTRVFALDMAATLA 225 E+YT V + + +A Sbjct: 267 EIYTHVDSAHLKKQIA 282 >UniRef50_A1U029 Phage integrase family protein n=2 Tax=Marinobacter RepID=A1U029_MARAV Length = 246 Score = 156 bits (394), Expect = 7e-37, Method: Composition-based stats. Identities = 60/208 (28%), Positives = 101/208 (48%), Gaps = 11/208 (5%) Query: 23 VDFATALSLRRMA-TSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARM 81 +D+ ++ R M S P YLL PE+ LL H ++ +W TG R+ E Sbjct: 38 IDWDRLIAKRPMLLESLDTMPKYLLKPEILGLLESESHPMHRLILDLMWCTGARVSEVLA 97 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEV-----RLVPLTDISYVRQMESWMITT 136 +TP SF DG ++ + ++ GRP K + R +P+ D + +++S++ Sbjct: 98 ITPASFIDDGYD--FGVMLKTLKQGAGRPSKRSLQRSPKRFIPILDRDFQTRIQSYLWMG 155 Query: 137 RPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 + R+ E ++ +T + + + + + + G + HTFRHS+ +H+L H +P K Sbjct: 156 KFRKDERIFPITRQAVSANIDRLIDQV---GGEPPFKIGCHTFRHSFAVHLLLHGRPLKF 212 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATL 224 + L GHR S EVYT V D A L Sbjct: 213 VSQLLGHRSVESPEVYTNVLTFDGAHFL 240 >UniRef50_C2G1Y8 Possible tyrosine recombinase n=3 Tax=Bacteroidetes RepID=C2G1Y8_9SPHI Length = 301 Score = 156 bits (394), Expect = 7e-37, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 80/191 (41%), Gaps = 21/191 (10%) Query: 37 STGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV 96 S P + EV +L + +H + T+++ G+R+ E L + + Sbjct: 121 SFSKLPKFFSKEEVRNILDNTQNLKHKAILMTIYSCGLRLSELLNLKIKDIK--SSDGII 178 Query: 97 RILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR----REPLWAVTDETM 152 RI + + KD R+V L D + + + +P+ E ++ ++ Sbjct: 179 RI-------HQSKGNKD--RIVSLPD-KLLATLRHYYQAFKPKEYLFEGERGGKYSERSV 228 Query: 153 RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVY 212 + LK+A+ +A + HT RHSY H++ ++++ L GH + ++ +Y Sbjct: 229 QLILKKALIKANVQSEG-----SVHTLRHSYATHLIQSGIDIRIVKELLGHENIKTTMIY 283 Query: 213 TRVFALDMAAT 223 T + +D T Sbjct: 284 THITDIDKQKT 294 >UniRef50_B5EB31 Tyrosine recombinase XerD n=4 Tax=Deltaproteobacteria RepID=B5EB31_GEOBB Length = 292 Score = 155 bits (393), Expect = 8e-37, Method: Composition-based stats. Identities = 47/209 (22%), Positives = 78/209 (37%), Gaps = 24/209 (11%) Query: 28 ALSLRRMATSTGATPAYLLAPEVSALLFYMPD-----QRHHMLFATLWNTGMRIGEARML 82 ++ PA L EV ALL D R + L+ TG+R+ E L Sbjct: 91 PTAIIEAPKGVRKLPAVLSGREVEALLSSPLDTGAQELRDKAMLELLYATGLRVSELVGL 150 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMITT 136 +L S G+ K+ RLVP+ + + Y++Q ++ Sbjct: 151 KLSEVNL----------SAGYLMTIGKGDKE--RLVPMGESACHATGVYLQQARGELLKE 198 Query: 137 RPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 + L + R +++ A ++PHT RHS+ H+L + + Sbjct: 199 KASTLLFLSRLGGGMSRQAFWNIIKK-RALQAGVRTSISPHTLRHSFATHLLENGADLRS 257 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATLA 225 +Q + GH D S ++YT V M A Sbjct: 258 VQIMLGHADLSSTQIYTHVTRERMKKLHA 286 >UniRef50_A4CN61 Tyrosine type site-specific recombinase n=1 Tax=Robiginitalea biformata HTCC2501 RepID=A4CN61_9FLAO Length = 386 Score = 155 bits (392), Expect = 1e-36, Method: Composition-based stats. Identities = 54/187 (28%), Positives = 76/187 (40%), Gaps = 15/187 (8%) Query: 35 ATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRP 94 P L EV LL + +H L A L+ G+R+GE L D+ + Sbjct: 180 PRKDRKLPGVLGKAEVMRLLQQTRNLKHRTLTALLYGCGLRVGELINLQLAEVDIPRRQL 239 Query: 95 FVRILSEKVRARRGRPPKDEVRLVPL-TDISYVRQMESWMITTRPRRREPLWAVTDETMR 153 VR + R+ R RL+PL D ++ RP ++ + ++R Sbjct: 240 LVR----AGKGRKDRRVVLPERLLPLLGDYLTAYAPSRYLAEGRPGQQ-----YSATSIR 290 Query: 154 NWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYT 213 +LK RRA VTPH RHSY H+L + IQ L GH P + VYT Sbjct: 291 AFLKANSRRA-----GILKKVTPHMLRHSYATHLLEQGVDIRYIQELLGHARPETTMVYT 345 Query: 214 RVFALDM 220 V D+ Sbjct: 346 HVSRQDL 352 >UniRef50_C4LIF6 Integrase/recombinase n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LIF6_CORK4 Length = 326 Score = 155 bits (392), Expect = 1e-36, Method: Composition-based stats. Identities = 52/202 (25%), Positives = 87/202 (43%), Gaps = 26/202 (12%) Query: 37 STGATPAYLLAPEVSALLFYMP--------DQRHHMLFATLWNTGMRIGEARMLTPESFD 88 S + P L +V+ L+ P R + L+ TGMRI EA L +S D Sbjct: 132 SGQSLPHALTVEQVNRLIEACPVNESSNPIALRDRAVIELLYGTGMRISEALNLDIDSID 191 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR--RREPLWA 146 + +VR++ G+ K+ RLVP+ + + +++W++ RP +R Sbjct: 192 RNHA--YVRVV--------GKGRKE--RLVPIGAPA-LHAIDAWLVRGRPSMVKRSDKAL 238 Query: 147 VTDETMRNWLKQAVRR---AEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 + +Q+V + A A+ V PHT RHSY H+L + +Q L GH Sbjct: 239 FLNARGNRLGRQSVWKFLHAAAERCGLGDSVGPHTLRHSYATHLLQGGADIRAVQELLGH 298 Query: 204 RDPRSMEVYTRVFALDMAATLA 225 + ++YT V ++ A Sbjct: 299 ASVTTTQIYTAVSIDNLREVYA 320 >UniRef50_Q3AB72 Tyrosine recombinase XerC n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AB72_CARHZ Length = 297 Score = 155 bits (392), Expect = 1e-36, Method: Composition-based stats. Identities = 53/211 (25%), Positives = 88/211 (41%), Gaps = 33/211 (15%) Query: 28 ALSLRRMATSTGATPAYLLAPEVSALLFYMPD-----QRHHMLFATLWNTGMRIGEARML 82 ALSL + P L EV ++ + R+ L + G+RIGE L Sbjct: 92 ALSL-EIPKIPKTLPEVLTVDEVFKVIEGQENSTPTGLRNRALLELFYGAGLRIGEIAGL 150 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR--- 139 T DL + +VR+ + R R+VPL + + ++ ++ RP Sbjct: 151 TLNDLDL--TQGYVRVTGKGRRQ----------RIVPLGKYA-LDSLKLYLEAGRPAFKP 197 Query: 140 RREPLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQP 193 + E L+ +T +R + Q V++A + +TPHTFRHSY H+L Sbjct: 198 KSEKLFLNQQGAGLTVRGIRYLISQIVKKA-----GLNRKITPHTFRHSYATHLLEGGAD 252 Query: 194 RKVIQALAGHRDPRSMEVYTRVFALDMAATL 224 + +Q L GH+ + E+YT + + Sbjct: 253 IRAVQELLGHKRLSTTEIYTHLSKERLREVY 283 >UniRef50_B0VFY6 Tyrosine recombinase xerD n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFY6_9BACT Length = 313 Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 50/202 (24%), Positives = 85/202 (42%), Gaps = 34/202 (16%) Query: 40 ATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRP 94 P L E+ LL +P + R+ ++ L+ TGMRI E ++ +L Sbjct: 124 QLPDVLTVEEMFQLLNSLPVKTPLEIRNKLMMELLYATGMRISELLSISLHDLNL----- 178 Query: 95 FVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP-----RRREPLW---- 145 +E+V G+ K R VP D + ++ +RP ++ E L+ Sbjct: 179 -----TERVILVHGKGSKQ--RYVPYVD-TLDELFAKYLKQSRPILLKLKQSELLFLNNR 230 Query: 146 --AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 ++ L++AV A + VTPHTFRHS+ H+L +++QAL GH Sbjct: 231 GERMSRMGFWKILRKAVLEA-----NIKKEVTPHTFRHSFATHLLEGGVNLRIVQALLGH 285 Query: 204 RDPRSMEVYTRVFALDMAATLA 225 + ++YT + + T Sbjct: 286 SSIDTTQIYTHIDMKRLVETYK 307 >UniRef50_Q03FK2 Tyrosine recombinase xerC n=72 Tax=Bacilli RepID=XERC_PEDPA Length = 301 Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 72/220 (32%), Gaps = 35/220 (15%) Query: 28 ALSLRRMATSTGATPAYLLAPEVSALLFYMP------DQRHHMLFATLWNTGMRIGEARM 81 L ++ + P + E++ L + R+ + L+ TGMR+ E Sbjct: 94 PFELVQLKKQSDKLPHFFYEKEMNMLFEAVYQAEGAQKLRNIAILEVLYGTGMRVSECAA 153 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRR 141 L D V G+ K+ R VP R + + R Sbjct: 154 LQWSDIDFSMQTILV----------LGKGNKE--RYVPFG-----RYAKEALQNYRKNEW 196 Query: 142 EPLWAVTDETMRN-WLKQAVRRAEADGVH-----------FSIPVTPHTFRHSYIMHMLY 189 EP + +T ++ + G+ + + PH RHS+ +L Sbjct: 197 EPFLSKYKQTHNFVFINHYAKPITTTGIEYILNQVITASSLNGKIHPHMLRHSFATALLN 256 Query: 190 HRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFT 229 + + +Q L GH + ++YT V + + F Sbjct: 257 NGADLRTVQELLGHSSLSTTQIYTHVTKEKLQESYRKYFP 296 >UniRef50_B2S2Y8 Integrase/recombinase n=4 Tax=Treponema RepID=B2S2Y8_TREPS Length = 306 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 46/207 (22%), Positives = 80/207 (38%), Gaps = 26/207 (12%) Query: 40 ATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRP 94 + P L +V+ L +P R LF ++ G+R+ EA L+ Sbjct: 107 SLPRVLSPEQVNTFLQSIPLCTPGGVRDRALFELIYAAGLRVSEAVSLSLSDI------- 159 Query: 95 FVRILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMITTR-PRRREP--LW 145 +E++ G+ K+ R+ P + + Y+R+ + + P E Sbjct: 160 ---FFAERLLKVTGKGNKE--RMAPFGEQACYFLMQYIREARVRFTSAKHPENSEKKGAV 214 Query: 146 AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRD 205 + + R K +R + + + HTFRHSY H+L +Q L GH D Sbjct: 215 FLNRQGGRLSRKGIWKRLQDIEIRSGVETHVHTFRHSYATHLLAGGVDLHSVQCLLGHAD 274 Query: 206 PRSMEVYTRVFALDMAATLAVPFTGDG 232 + +VYT V + A F+ +G Sbjct: 275 IATTQVYTHVENGQLEACHRACFSSEG 301 >UniRef50_A1HN49 Tyrosine recombinase XerC n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HN49_9FIRM Length = 302 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 46/209 (22%), Positives = 83/209 (39%), Gaps = 36/209 (17%) Query: 35 ATSTGATPAYLLAPEVSALLFYMPDQ----RHHMLFATLWNTGMRIGEARMLTPESFDLD 90 P +L EV+ LL D R + L+ TG+R+ E L DL Sbjct: 106 PKIEKKLPVFLDEREVAELLELPADDVLGRRDAAILELLYATGIRVAELTGLKTSDVDLV 165 Query: 91 GVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR--------RRE 142 V G+ K+ R+VP+ + +E ++ RPR + + Sbjct: 166 SRFVIVC----------GKGAKE--RIVPIGRTA-AAALERYLADARPRLYSKWRKEQHQ 212 Query: 143 PLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 L+ +TD ++R + + + + + V+PHT RH++ HML + + Sbjct: 213 FLFINSKGGPLTDRSVRRIIDKYI-----ANLAVAKKVSPHTIRHTFATHMLNNGADLRS 267 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATLA 225 +Q + GH + + ++YT V + A Sbjct: 268 VQEMLGHVNLSTTQLYTHVTKERLKAVYR 296 >UniRef50_Q67PC5 Recombinase n=2 Tax=Firmicutes RepID=Q67PC5_SYMTH Length = 356 Score = 154 bits (390), Expect = 2e-36, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 84/236 (35%), Gaps = 48/236 (20%) Query: 13 RVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFA 67 R L+P P T RR P +L E+ LL R L Sbjct: 129 RADLVPTNPVAGVHTPKLERR-------LPVFLDEEEIGGLLSQPDTHTPLGLRDRALLE 181 Query: 68 TLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISY-- 125 L+ TG+R+GE L D V G+ K+ R VP+ + Sbjct: 182 LLYATGLRVGELVALNRGDIDYSEGWVIVW----------GKGRKE--RAVPVGSEALQA 229 Query: 126 -----------VRQMESWMITTRPRRREPLW------AVTDETMRNWLKQAVRRAEADGV 168 +R + P ++PL+ ++D ++R L + V + + Sbjct: 230 LGHYLRDGWPVLRARAPAAEQSLPEAKQPLFLNKLGGRLSDRSVRRLLDRYVSQ-----L 284 Query: 169 HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATL 224 S ++PH RH++ HML H + +Q + GH + ++YT V + Sbjct: 285 ALSRQISPHKIRHTFATHMLNHGADLRAVQEMLGHASLSTTQIYTHVTTQRLRTEY 340 >UniRef50_B5YGX8 Tyrosine recombinase XerD n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGX8_THEYD Length = 294 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 85/192 (44%), Gaps = 21/192 (10%) Query: 41 TPAYLLAPEVSALLFYMPD----QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV 96 P L EV LL M + R + ++ +G+R+ E L + + F+ Sbjct: 108 LPKALEIDEVKRLLSVMLESKYYLRDIAMLELMYASGLRVSELVRLKLSDINFEA--GFI 165 Query: 97 RILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP---RRREPLWAVTDETMR 153 R+ +G+ K+ R+VP+ S + +++++++ RP +++ + + + Sbjct: 166 RV--------KGKGDKE--RVVPIAQRS-IDKIKNYLVKLRPVLLKKKASEYVFLNNRGQ 214 Query: 154 NWLKQAVRR-AEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVY 212 +Q + +A G + VTPH RHS+ H+L + +Q + GH D + ++Y Sbjct: 215 PMTRQRFWQNIKAIGRIAGVNVTPHMIRHSFATHLLEGGADLRSLQKMLGHSDISTTQIY 274 Query: 213 TRVFALDMAATL 224 T+V + Sbjct: 275 TKVSMDRLRKEY 286 >UniRef50_A3DD82 Tyrosine recombinase XerD subunit n=13 Tax=Firmicutes RepID=A3DD82_CLOTH Length = 296 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 77/202 (38%), Gaps = 25/202 (12%) Query: 35 ATSTGATPAYLLAPEVSALLFY-----MPDQRHHMLFATLWNTGMRIGEARMLTPESFDL 89 P L EV LL + R + L+ TG+R+ E L + +L Sbjct: 103 PKVEKKLPQILSTKEVELLLEQPKCDDLKGYRDKAMLELLYATGIRVSELISLDLDDVNL 162 Query: 90 DGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR------PRRREP 143 + + +R +G R+VP+ +S V ++ ++ +R P + Sbjct: 163 E---------MQYIRCNKGA----RERIVPIGSVS-VNALQEYLTKSRNLLIQRPDEKAL 208 Query: 144 LWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 V + + + + + + +TPHT RHS+ H+L + + IQ + GH Sbjct: 209 FVNVNGKRLTRQGFWKIIKQYKNQAKINKDITPHTLRHSFAAHLLENGADLRSIQEMLGH 268 Query: 204 RDPRSMEVYTRVFALDMAATLA 225 D S ++Y ++ + Sbjct: 269 SDISSTQIYAQLAKNRIKEIYK 290 >UniRef50_C0QM80 Tyrosine recombinase XerD n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QM80_DESAH Length = 295 Score = 154 bits (389), Expect = 2e-36, Method: Composition-based stats. Identities = 57/206 (27%), Positives = 87/206 (42%), Gaps = 28/206 (13%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMPD------QRHHMLFATLWNTGMRIGEA 79 + L L + + P +L +V+ALL MPD R+ + L+ G+R+ E Sbjct: 92 SNPLRLIDIPKAGTRLPRFLSQDQVTALLE-MPDRTTHRGLRNAAMLEILYGAGLRVSEL 150 Query: 80 RMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP- 138 L E DL V FVR+ + R R+VP + R ME W+ RP Sbjct: 151 VGLKTEQVDL--VACFVRLFGKGSRE----------RIVPFGSHARQRTME-WLEWGRPW 197 Query: 139 ------RRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQ 192 R + + R + +++ A G SI V+PHT RHS+ H+L Sbjct: 198 MLKKNASRYLFVARAGNPMTRQGFWKLLKKY-ALGAGISIKVSPHTLRHSFATHLLEGGA 256 Query: 193 PRKVIQALAGHRDPRSMEVYTRVFAL 218 + +Q + GH D S ++YT V Sbjct: 257 DLRSVQTMLGHADIASTQIYTHVSRQ 282 >UniRef50_B0TP43 Integron integrase n=9 Tax=Bacteria RepID=B0TP43_SHEHH Length = 320 Score = 154 bits (389), Expect = 3e-36, Method: Composition-based stats. Identities = 57/222 (25%), Positives = 85/222 (38%), Gaps = 31/222 (13%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGV 92 R AT P L EVS +L + + R ++ L+ +G+R+ E L + DL Sbjct: 96 RYATKQRQLPIVLSTEEVSEVLCQL-NGRDQLIVQLLYGSGLRVSECLRLRIQDIDLARC 154 Query: 93 RPFVR---------ILSEKVRARRGRPPKDEVRLVPLTDISY------VRQMES------ 131 VR + + A + D R + + D +Y +E Sbjct: 155 SLTVRNGKGHKDRQTILSQKCAIKLPAYIDAARAIQIKDNTYCIGPSLPNALERKYPNAF 214 Query: 132 ----WMITTRPRRREPLWAVTDETMRNWLKQAVRR----AEADGVHFSIPVTPHTFRHSY 183 WM P T R+ L Q+V R A H VT HTFRHS+ Sbjct: 215 RQAGWMFVF-PSTTTSDNPYTKTHCRHHLHQSVIRKALAAAVRKTHIIKRVTCHTFRHSF 273 Query: 184 IMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLA 225 H+L + + IQ L GH D + ++YT V A T++ Sbjct: 274 ATHLLQAGRDIRTIQELLGHNDVNTTQIYTHVLGQHYAGTVS 315 >UniRef50_B3QWZ3 Integrase family protein n=11 Tax=Bacteroidetes/Chlorobi group RepID=B3QWZ3_CHLT3 Length = 289 Score = 154 bits (389), Expect = 3e-36, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 72/187 (38%), Gaps = 21/187 (11%) Query: 34 MATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVR 93 P L EV ++L + +H + +++ G+R E L P D R Sbjct: 102 RPRKENKLPKVLSKNEVKSILVSTDNIKHKCILMLIYSAGLRRSELLNLKPTDID--SGR 159 Query: 94 PFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR----REPLWAVTD 149 + IL K + R + L + ++ + + P++ + Sbjct: 160 MLIHILGAKGKKDR----------ISLLSENLLKLLRQYYKEFHPKKYLFEGLDGGKYSP 209 Query: 150 ETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSM 209 ++ N LK+A +A VTPH RHS+ H+L + IQ L GH ++ Sbjct: 210 TSVANILKKASLKA-----GIHKNVTPHMLRHSFATHLLEQGTDLRYIQELLGHESSKTT 264 Query: 210 EVYTRVF 216 E+YT V Sbjct: 265 EIYTHVS 271 >UniRef50_C0VWG3 Site-specific tyrosine recombinase XerD n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VWG3_9CORY Length = 360 Score = 154 bits (388), Expect = 4e-36, Method: Composition-based stats. Identities = 40/199 (20%), Positives = 79/199 (39%), Gaps = 21/199 (10%) Query: 35 ATSTGATPAYLLAPEVSALLFYMPD-----QRHHMLFATLWNTGMRIGEARMLTPESFDL 89 P L E++ L+ R+ L L+ TG RI E L + Sbjct: 163 PAMPQHLPDTLSVDEINTLIESQAGDSAVALRNKALLELLYGTGARISEVLSLAVDDITA 222 Query: 90 DGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP---RRREPLWA 146 + +L+ G+ K R+VP+ + + ++++++ RP + + Sbjct: 223 LEETDGILVLT-------GKGDKQ--RIVPVGSHAR-QAVDAYLVRGRPQLNKGKSAALF 272 Query: 147 VTDETMRNWLKQA---VRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 + + +Q+ V + A + ++PHT RHS+ H+L + +Q L GH Sbjct: 273 LNVRGGKAMSRQSAWQVVKQAATEAGITKDISPHTLRHSFATHLLEGGADVRSVQELLGH 332 Query: 204 RDPRSMEVYTRVFALDMAA 222 + ++YT + A + A Sbjct: 333 ASVTTTQIYTHITADSLRA 351 >UniRef50_B7CAN0 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAN0_9FIRM Length = 300 Score = 154 bits (388), Expect = 4e-36, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 89/211 (42%), Gaps = 22/211 (10%) Query: 36 TSTGATPAYLLAPEVSALLFYMPD----QRHHMLFATLWNTGMRIGEARMLTPESFDLDG 91 S+ P YL EV + D Q + + L++ G+R+ E L L Sbjct: 103 KSSKHLPVYLSVDEVKKVFSSFQDNEIDQYNKTILVVLYSCGLRVSELCDLKLNDVHL-- 160 Query: 92 VRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP--RRREPLWAVTD 149 +E++ +G+ K+ R++P++ V QM+ ++ + R + + + Sbjct: 161 --------TEQILKVKGKGDKE--RIIPISSYC-VSQMKYYLDSIRFVWDVKNVSYFFVN 209 Query: 150 ETMRNWLKQAV---RRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDP 206 +Q V + + + ++ + ++ H+FRHS+ H+L +++Q L GH + Sbjct: 210 RLGHICTRQYVHLMIKQKVNELNLNPKISAHSFRHSFATHLLDGDADLRIVQELLGHSNI 269 Query: 207 RSMEVYTRVFALDMAATLAVPFTGDGRDAAE 237 + ++YT + +++ F + E Sbjct: 270 STTQIYTHIQDKRLSSVYDRCFQKIEKSKEE 300 >UniRef50_C4FX95 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FX95_9FIRM Length = 331 Score = 154 bits (388), Expect = 4e-36, Method: Composition-based stats. Identities = 49/210 (23%), Positives = 86/210 (40%), Gaps = 24/210 (11%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMPD------QRHHMLFATLWNTGMRIGEA 79 + L + P + E++ L + R ML L+ TGMR+ E Sbjct: 121 TNPMELVQYQVKKKTLPQFFYEQELTQLFDSLYKREDDAAWRDRMLLEVLYATGMRVSEL 180 Query: 80 RMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP- 138 L+ E +L+ +R+L G+ K+ R+VPL D S + + ++ RP Sbjct: 181 SELSLERLNLE--VQLIRVL--------GKGNKE--RIVPLGD-SATQAIRDYLSHLRPK 227 Query: 139 --RRREPLWAVTDETMRNWLKQAVRRAE--ADGVHFSIPVTPHTFRHSYIMHMLYHRQPR 194 R P +TD+ +Q R + + ++ + PH RHS+ H+L Sbjct: 228 IDRNNSPYLLLTDKGAPMSPRQIRTRLKSLVEEQAMNLKIYPHKLRHSFATHLLNKGADL 287 Query: 195 KVIQALAGHRDPRSMEVYTRVFALDMAATL 224 + +Q L GH + S ++YT V + + Sbjct: 288 RTVQELLGHANLSSTQIYTHVTKDQLRSQY 317 >UniRef50_D2RA84 Tyrosine recombinase XerD n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RA84_GARVA Length = 319 Score = 154 bits (388), Expect = 4e-36, Method: Composition-based stats. Identities = 51/216 (23%), Positives = 84/216 (38%), Gaps = 42/216 (19%) Query: 22 GVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD--------QRHHMLFATLWNTG 73 D + + + A P L EV+ ++ + R L L+ TG Sbjct: 109 QADVSAQVKAPKQA---DYLPDVLSIEEVNRVIEAAGNFGSSDAISIRDTALLEFLYATG 165 Query: 74 MRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWM 133 RI EA + E DL+ E V G+ K RLVP+ + VR + ++M Sbjct: 166 ARISEAVGVKFEDIDLN----------ESVVKLTGKGSKQ--RLVPIGGCA-VRALRNYM 212 Query: 134 ITTRPRR-------------REPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFR 180 +RP + A++ ++ + QA RA+ D P+ PHT R Sbjct: 213 EKSRPELALKGKRELHTIFLNKRGSALSRQSAWEIVTQAGERAKLD-----KPLHPHTLR 267 Query: 181 HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVF 216 HS H++ + +Q L GH + ++YT + Sbjct: 268 HSLATHLIAGGADVRTVQELLGHASVTTTQIYTHIS 303 >UniRef50_A8FD78 Tyrosine recombinase xerC n=89 Tax=Bacillaceae RepID=XERC_BACP2 Length = 305 Score = 153 bits (387), Expect = 4e-36, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 79/218 (36%), Gaps = 37/218 (16%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEAR 80 L + P++L E+ L QR+ + L+ TGMR+ E Sbjct: 95 ENPFLLVSLPKQDKRIPSFLYEEELKELFTVSDVSTPLGQRNQAILELLYATGMRVSELC 154 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR 140 L DL V G+ K R VP ++ + +++ R + Sbjct: 155 SLKESDLDLSMDTVLV----------HGKGSKQ--RYVPFGSYAH-EALITYLEDGRLKL 201 Query: 141 R--------------EPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMH 186 + + +TD +R L + +++A ++ + PH RH++ H Sbjct: 202 KAKGKDRADAYVFLNQRGAPLTDRGVRFILTELMKKASG-----TLHIHPHMLRHTFATH 256 Query: 187 MLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATL 224 +L + +Q L GH + S +VYT V + T Sbjct: 257 LLNEGADLRSVQELLGHSNLSSTQVYTHVSKDSLRKTY 294 >UniRef50_Q93C64 Tyrosine recombinase xerD n=50 Tax=Bacilli RepID=XERD_LACCA Length = 293 Score = 153 bits (387), Expect = 4e-36, Method: Composition-based stats. Identities = 45/201 (22%), Positives = 80/201 (39%), Gaps = 24/201 (11%) Query: 35 ATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESFDL 89 PA L E+ AL+ R +F ++ TG+R+ E L + L Sbjct: 99 PKKAQHLPATLSGTEIDALMAKPDTTKPLGLRDRAIFELMYATGLRVSEVVGLRLDQLHL 158 Query: 90 DGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR---REPLWA 146 + + G+ K+ RLVP++ + + ++ +RPR ++P Sbjct: 159 ----------AMNLLQVTGKGDKE--RLVPISPQA-ADWVNRYLQESRPRLIKHQQPKAV 205 Query: 147 VTDETMRNWLKQAVRR---AEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 + +Q + + A V VTPHT RHS+ +L + +V+Q L GH Sbjct: 206 FVNFHGHALTRQVIWKNLKAYIASVGIEKDVTPHTLRHSFATRLLENGADLRVVQELLGH 265 Query: 204 RDPRSMEVYTRVFALDMAATL 224 D + ++YT + + A Sbjct: 266 SDISTTQIYTHLSNQHLVAVY 286 >UniRef50_C8PTU7 Integron integrase n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PTU7_9SPIO Length = 426 Score = 153 bits (387), Expect = 4e-36, Method: Composition-based stats. Identities = 52/213 (24%), Positives = 75/213 (35%), Gaps = 29/213 (13%) Query: 34 MATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVR 93 A + PA L E + + +P+ + + L+ TGMR+ E+ L + D D Sbjct: 201 RAKKSKKLPAVLSREETAKIFSLLPENDYGLFIRLLYGTGMRLMESLRLRVQDIDFDKNE 260 Query: 94 PFVRILS---------------------EKVRARRGRPPKDEVRLVPLTD---ISYVRQM 129 V E VR KD LVPL Y Sbjct: 261 ITVHCGKGAKDRKTMLPVSLKFPLQKHLENVRRIHEADCKDGFGLVPLPSALAKKYPNAG 320 Query: 130 ESWMIT-TRPRRREPLWAVTDETMRNWLKQAVRR----AEADGVHFSIPVTPHTFRHSYI 184 ++W P+ R T E R+ + +V + P+ HTFRHS+ Sbjct: 321 KTWAWQWVFPQARRWQNKETGEQGRHHIDPSVIQRTLHEAVLRSGIPKPIGCHTFRHSFA 380 Query: 185 MHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFA 217 H+L + IQ L GH D + VYT V Sbjct: 381 THLLESGYDIRTIQELLGHSDVSTTMVYTHVLN 413 >UniRef50_D1R4B2 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R4B2_9CHLA Length = 304 Score = 153 bits (386), Expect = 5e-36, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 80/192 (41%), Gaps = 23/192 (11%) Query: 41 TPAYLLAPEVSALLFYMPDQ-----RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 P L EV L+ ++ R +F L+ +G+R+ E LT S D +R + Sbjct: 118 LPDILDIEEVDLLMNQPDNKTAKGVRDRAIFELLYGSGLRVSEVCTLTIYSIDDQYIRVY 177 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDISYV---RQMESWMITTRPRRREPLW-AVTDET 151 G+ K+ R+VP+ + + + + + + + L+ + ++ Sbjct: 178 ------------GKGSKE--RIVPIGSQALMAVDQYLSLYRWQWDSEKEQSLFVTLRGKS 223 Query: 152 MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEV 211 M + A + ++PHT RHS+ H+L + +VIQ L GH + S + Sbjct: 224 MDRISIWRSIKEYAQQAGITKTISPHTLRHSFATHLLNNGADLRVIQDLLGHANISSTDR 283 Query: 212 YTRVFALDMAAT 223 YTRV + + Sbjct: 284 YTRVSSAHLQEA 295 >UniRef50_B8I2V9 Tyrosine recombinase XerD n=5 Tax=Bacteria RepID=B8I2V9_CLOCE Length = 294 Score = 153 bits (386), Expect = 5e-36, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 74/209 (35%), Gaps = 25/209 (11%) Query: 28 ALSLRRMATSTGATPAYLLAPEVSALLFY-----MPDQRHHMLFATLWNTGMRIGEARML 82 S P L EV LL + R + L+ TG+R+ E L Sbjct: 94 PTSELESPKVEKKLPQILSTQEVELLLDQPKCLDLKGIRDKAMLELLYATGIRVSELISL 153 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMITT 136 + + D ++ +G R +P+ IS Y+ + +++I Sbjct: 154 NLDDINFDL---------GLIKCNKGT----RERTIPIGSISTAAVHEYLEKSRNFLIQD 200 Query: 137 RPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 + R + ++ + + + +TPHT RHS+ H+L + + Sbjct: 201 SQEIALFVNVNGKRLTRQGFWKIIKHYK-NQAKINKDITPHTLRHSFAAHLLENGADLRS 259 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATLA 225 IQ + GH D S ++Y ++ + Sbjct: 260 IQEMLGHSDISSTQIYAQIAKNKIKDVYK 288 >UniRef50_A5WBQ8 Tyrosine recombinase XerD n=6 Tax=Moraxellaceae RepID=A5WBQ8_PSYWF Length = 312 Score = 153 bits (386), Expect = 6e-36, Method: Composition-based stats. Identities = 41/209 (19%), Positives = 78/209 (37%), Gaps = 37/209 (17%) Query: 33 RMATSTGATPAYLLAPEVSALLFY-----MPDQRHHMLFATLWNTGMRIGEARMLTPESF 87 + + P L +V +LL R + L+ G+R+ E L+ E Sbjct: 113 KTPKIGRSLPKDLSENDVESLLSAPDTSTALGLRDKAMLEVLYACGLRVSELMNLSLEQV 172 Query: 88 DLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWA- 146 +L+ + G+ K RLVPL + + ++ ++ R L + Sbjct: 173 NLNAGWLQI----------TGKGNK--TRLVPLGEYA-SDALDDYLTHARGELVAHLKSG 219 Query: 147 -------------VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQP 193 +T + +K+ ++A ++PHT RH++ H+L H Sbjct: 220 NCQAVFLTTQGGYMTRQNFWYMIKKYAKQA-----GIQSDLSPHTLRHAFATHLLNHGAD 274 Query: 194 RKVIQALAGHRDPRSMEVYTRVFALDMAA 222 + +Q L GH D + ++YT V + Sbjct: 275 LRSVQLLLGHSDLSTTQIYTHVATARLQQ 303 >UniRef50_A9NG15 Site-specific tyrosine recombinase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NG15_ACHLI Length = 301 Score = 153 bits (386), Expect = 6e-36, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 82/218 (37%), Gaps = 32/218 (14%) Query: 34 MATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESFD 88 P L EV ++L + R+ L ++ +G+R+ E + + Sbjct: 101 RPKIEKTLPTVLSVDEVISILEVIDKSTTLGLRNMALLELIYGSGLRVSELLNIKLKDIH 160 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR----PRRREPL 144 + V G+ K+ R+VP++D++ + + ++++ R + + L Sbjct: 161 MQQSYVIV----------TGKGSKE--RMVPISDMAII-AIRNYLVKARDDLIKEKTDYL 207 Query: 145 W------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQ 198 + ++ LK+ A D V+PHT RHS+ H+L + + +Q Sbjct: 208 FINNQGKTLSRVGFFKVLKKLASEANLD----PEKVSPHTLRHSFATHLLENGMDLRSLQ 263 Query: 199 ALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAA 236 L GH D + ++YT + + + Sbjct: 264 NLLGHEDISTTQIYTHISQSRLKQVYNKTHPRAKENNK 301 >UniRef50_D2LLC2 Integrase family protein n=2 Tax=Aciduliprofundum boonei T469 RepID=D2LLC2_9EURY Length = 270 Score = 153 bits (386), Expect = 6e-36, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 86/194 (44%), Gaps = 23/194 (11%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGV 92 +A P L EV +++ + +H ++ L+ GMR+ E R + E + + Sbjct: 91 PLAKKKEKLPVVLSRDEVKRMIYGTHNIKHRLVLMFLYYAGMRLQEVRNIRWEDVEFERE 150 Query: 93 RPFVRILSEKVRARRGRPPKDEVRLVPL----TDISYVRQMESWMITTRPRRREPLWAVT 148 +++ + K+ V + T Y R+ + ++ ++ ++ + Sbjct: 151 IIHIKV---------AKGDKERVVFLHPNLKNTLEIYGRKSKGYVFMSQRGKK-----YS 196 Query: 149 DETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRS 208 ++++ +K A RRA+ + VTPHT RHS+ H+L + IQ L GH+ ++ Sbjct: 197 PKSIQLIVKNAARRAK-----INKNVTPHTLRHSFATHLLEGGADIRYIQQLLGHKHLKT 251 Query: 209 MEVYTRVFALDMAA 222 ++YT V D+ Sbjct: 252 TQIYTHVANKDIKK 265 >UniRef50_A5EXM2 Tyrosine recombinase XerD n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXM2_DICNV Length = 297 Score = 153 bits (386), Expect = 6e-36, Method: Composition-based stats. Identities = 50/201 (24%), Positives = 84/201 (41%), Gaps = 32/201 (15%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGV 92 S A L AP+V +L R + L+ G+R+ E LT LD Sbjct: 109 PQTMSESDVEALLSAPDVQTILG----LRDRAMLELLYACGLRVSELVGLTLHQIALD-- 162 Query: 93 RPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR-----------R 141 +V+IL G+ K+ RLVP +I++ ++ ++ RP+ Sbjct: 163 VGYVQIL--------GKGDKE--RLVPFGEIAH-EWLQRYIQEARPQLLGQKMSDYVFVS 211 Query: 142 EPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALA 201 + A++ + LK V D S ++PHT RH++ H+L H + IQ L Sbjct: 212 QRGAALSRQAFWYRLKVYVCAVGLD----SNKISPHTLRHAFASHLLAHGADLRSIQMLL 267 Query: 202 GHRDPRSMEVYTRVFALDMAA 222 GH D + ++YT + + + Sbjct: 268 GHSDLSTTQIYTHIADQRLKS 288 >UniRef50_B8FH24 Tyrosine recombinase XerC n=2 Tax=Desulfobacteraceae RepID=B8FH24_DESAA Length = 315 Score = 152 bits (385), Expect = 8e-36, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 85/226 (37%), Gaps = 35/226 (15%) Query: 12 ERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ-----RHHMLF 66 E+ + + P T + +A +L E ALL + D R +F Sbjct: 102 EKRGRVAVNPAQSVVTPKRKKTVAA-------HLTVDEAFALLDSILDDSLAGARDRAMF 154 Query: 67 ATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYV 126 L++TG+R+ E L + G V G+ K+ + V + ++ Sbjct: 155 ECLYSTGIRVSELAGLNMGRVNFSGKTLRV----------LGKGDKERIVPVGAKALEHI 204 Query: 127 RQMESWMITTRPRRREP--------LWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHT 178 + + P+ +P +T ++R L++ VR + + P++PH Sbjct: 205 KAYRDRLAVEGPKNPDPEAVFLNKNGGRLTTRSIRRILEKIVR-----DMGLNRPLSPHG 259 Query: 179 FRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATL 224 RH++ HML + + +Q L GH + YT V + A Sbjct: 260 LRHTFATHMLDNGADLRSVQELLGHASISTTGRYTHVSIDRLMAAY 305 >UniRef50_B5YFZ8 Tyrosine recombinase xerC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=XERC_THEYD Length = 301 Score = 152 bits (385), Expect = 8e-36, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 82/218 (37%), Gaps = 37/218 (16%) Query: 36 TSTGATPAYLLAPEVSALLFYMPD-----QRHHMLFATLWNTGMRIGEARMLTPESFDLD 90 A P +L + L+ + QR + +++G+R+ E L E DL Sbjct: 101 KIKRALPKFLTVDDAFKLVEAPSEDKFTVQRDKAILELFYSSGIRVSELCGLNLEDLDL- 159 Query: 91 GVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRRE-------- 142 E + RG+ K+ R+VP+ + ++ ++ + R + Sbjct: 160 ---------KEGLIKVRGKGKKE--RIVPVGQKAK-EALKKYLAIRQILRIKKKLSLDET 207 Query: 143 PLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 PL+ ++D +R +++ + + + PHT RH++ H+L +V Sbjct: 208 PLFINNRGQRISDRQVRRIVEKYAKF-----IGVLEKIGPHTLRHTFASHLLMEGADLRV 262 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 IQ L GH + ++YT V + D Sbjct: 263 IQELLGHASLSTTQIYTHVDLKHLIEVYDKSHPLSKED 300 >UniRef50_C5TJ38 Tyrosine recombinase XerD n=5 Tax=Neisseriaceae RepID=C5TJ38_NEIFL Length = 293 Score = 152 bits (384), Expect = 9e-36, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 80/208 (38%), Gaps = 35/208 (16%) Query: 33 RMATSTGATPAYLLAPEVSALLFY-----MPDQRHHMLFATLWNTGMRIGEARMLTPESF 87 + S P + ++ ALL R L ++ TG+R+ EA LT Sbjct: 98 KAPKSERKLPTLITEAQIDALLAAPDVETSHGLRDKALLEVMYATGLRVTEAVKLTLSDI 157 Query: 88 DLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR------- 140 DL R +R + + D++RLVPL + +E + +RP Sbjct: 158 DLH--RGSIRTIGKG----------DKLRLVPLGQEA-AYWVERYCNESRPLLLKNKICD 204 Query: 141 ----REPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 + ++ + +K+ A ++PH RH++ H++ H + Sbjct: 205 EVFVSQKRSGISRQLAWMIVKEYAEAAGIA------SLSPHGLRHAFATHLVNHGVDLRS 258 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATL 224 +Q + GH D + ++YT V + + + Sbjct: 259 VQMMLGHSDINTTQIYTHVANIRLKNMV 286 >UniRef50_B1GYR5 Tyrosine recombinase XerC n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYR5_UNCTG Length = 314 Score = 152 bits (384), Expect = 9e-36, Method: Composition-based stats. Identities = 46/209 (22%), Positives = 84/209 (40%), Gaps = 32/209 (15%) Query: 30 SLRRMATSTGATPAYLLAPEVSALLFYMPDQ--RHHMLFATLWNTGMRIGEARMLTPESF 87 S+ P++L E+ LL +PD R + ++ G+RI E L ++ Sbjct: 118 SMPASLKKDKKVPSFLTENEMQMLLN-LPDLKPRDRAMIELFYSCGLRIEELVSLDLKNI 176 Query: 88 DLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR-----RE 142 D V G+ K+ R+VP+ DI + ++ ++ R R Sbjct: 177 DF----------ISNVVTVTGKRNKE--RIVPVGDIC-LHAIKDYINKRRNLGLPYDIRS 223 Query: 143 PLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 P++ + T R L + +A F+ V+PHT RH++ H+L + Sbjct: 224 PVFLSDRAKRLGQRTARRILHRYFVKA-----GFTKKVSPHTLRHTFATHILDRGCDLRS 278 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATLA 225 +Q + GH++ S ++YT V + Sbjct: 279 VQEMLGHKNLSSTQIYTHVTIESLKKVYK 307 >UniRef50_B7VJ63 Tyrosine recombinase xerD n=5 Tax=Vibrionales RepID=B7VJ63_VIBSL Length = 320 Score = 152 bits (384), Expect = 9e-36, Method: Composition-based stats. Identities = 49/212 (23%), Positives = 88/212 (41%), Gaps = 33/212 (15%) Query: 30 SLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTP 84 +L P L +V +LL + R + L+ TG+R+ E LT Sbjct: 120 ALLISPKLPKRLPKDLSEEQVDSLLEAPDPNDPIELRDKAMLELLYATGLRVTELVSLTM 179 Query: 85 ESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR---- 140 E+ L + VR++ G+ K+ RLVP+ + + V +E+++ RP+ Sbjct: 180 ENISL--RQGVVRVI--------GKGGKE--RLVPMGENA-VDWIETFIEQGRPQLLGDN 226 Query: 141 -------REPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQP 193 + +T +T +K A D + ++PH RH++ H+L + Sbjct: 227 SSDVVFPSKRAKQMTRQTFWYRIKHYSVIAGID----TELLSPHVLRHAFATHLLNYGAD 282 Query: 194 RKVIQALAGHRDPRSMEVYTRVFALDMAATLA 225 +V+Q L GH D + ++YT V + A Sbjct: 283 LRVVQMLLGHSDLSTTQIYTHVATERLKQIHA 314 >UniRef50_C6JHS7 Transposase n=7 Tax=Bacteria RepID=C6JHS7_9FIRM Length = 285 Score = 152 bits (384), Expect = 9e-36, Method: Composition-based stats. Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 22/201 (10%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGV 92 P L E+SA+L P+ +H + AT+++ G+R+ E L + Sbjct: 96 PRMKRDRKLPTVLTKAEISAILDATPNLKHKAMIATMYSGGLRVSEVTHLHYDD------ 149 Query: 93 RPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWA-----V 147 + ++ + R G+ D R L D + E W RPR + + Sbjct: 150 ---ISRTNKTIHIRDGKSRSD--RYTLLADRTLEILTEYWFQCGRPRGILFPSSWTGDYL 204 Query: 148 TDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPR 207 T +++ + +++ RA V+ H RHS+ H+ K IQAL GHRDP+ Sbjct: 205 TKDSVIQFFRESAERA-----GIQKHVSTHCLRHSFASHLFESGCDIKYIQALLGHRDPK 259 Query: 208 SMEVYTRVFALDMAATLAVPF 228 S E+Y V + + PF Sbjct: 260 STEIYLHVSNKTLLG-IKSPF 279 >UniRef50_C5CH36 Integrase family protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CH36_KOSOT Length = 305 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 53/224 (23%), Positives = 91/224 (40%), Gaps = 32/224 (14%) Query: 28 ALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ----RHHMLFATLWNTGMRIGEARMLT 83 L + + P Y+ EV +L P+ R+ + A ++ G+R+ E LT Sbjct: 100 PTDLVKAPKTRRRIPEYISYEEVQKILEAFPETHLGKRNRAIVALMYYCGLRVSEVCSLT 159 Query: 84 PESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR----PR 139 L+ P VR+ S G+ KD R+VPLT + VR + ++ Sbjct: 160 LRDISLES-DPLVRVKS-------GKGDKD--RIVPLTPDA-VRIISDYLKHRDRFPDAN 208 Query: 140 RREPLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQP 193 R L+ +T +++ L+ V++ D + PH FRHS H+L Sbjct: 209 RHIKLFVGIRGEPITRKSVNKMLQNHVKKIFPD-----KHLHPHIFRHSCATHLLQRGAS 263 Query: 194 RKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAE 237 K++Q + GH + + +Y + D AV +G A + Sbjct: 264 IKIVQEILGHANISTTSIYLHIT--DREKREAVRLLSNGEKAGK 305 >UniRef50_C6WZV5 Integrase n=2 Tax=Flavobacteriaceae RepID=C6WZV5_FLAB3 Length = 302 Score = 152 bits (384), Expect = 1e-35, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 78/192 (40%), Gaps = 25/192 (13%) Query: 41 TPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 P L +V ++ + +R+ + L+ G+R+ E L + + Sbjct: 111 LPDTLSFEDVERIIKAINISTDLGRRNQCMIEVLYGCGLRVSELIDLKISNINF------ 164 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRR------EPLWAVTD 149 E G+ D+ R VPL + + ++ ++ R + + + L+ + Sbjct: 165 ----KELYLKVDGKG--DKSRFVPLATYT-AKLIKEYIQEIRSKYKINKKCEDVLFLNSR 217 Query: 150 ET-MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRS 208 + M + + + + + ++PHTFRHS+ H+L + + IQ + GH + Sbjct: 218 GSAMSRVIVFIIIKELTEKAGINKKISPHTFRHSFATHLLQNGADLRYIQEMLGHSSITT 277 Query: 209 MEVYTRVFALDM 220 E+YT + ++ Sbjct: 278 TEIYTHLKNEEL 289 >UniRef50_Q1Q4J1 Similar to site-specific recombinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q4J1_9BACT Length = 295 Score = 152 bits (383), Expect = 1e-35, Method: Composition-based stats. Identities = 37/209 (17%), Positives = 78/209 (37%), Gaps = 24/209 (11%) Query: 28 ALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARML 82 L P + ++ LL R+ + L+ TG R+ E + Sbjct: 94 PLVSLDSPKLWKKLPYVVPIHKIEDLLSAADVKTKLGIRNKAILELLYATGARVSEVATI 153 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRRE 142 + +L+ +G+ K+ R+VPL + + ++ ++ T RP+ ++ Sbjct: 154 SLNGINLEY----------GYIKCKGKGSKE--RIVPLGKKASI-AIQEYLTTVRPQIKD 200 Query: 143 P------LWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 + T +R + + A + ++PH RHS+ H+L + + Sbjct: 201 SQNSHYLFLSRTGRPLRRENIWLIVKNCALKAGITEAISPHKLRHSFATHLLENGADLRA 260 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATLA 225 +Q + GH + ++YT V + A Sbjct: 261 VQEMLGHVSISTTQIYTHVNKQHLKAIHQ 289 >UniRef50_C3Q7K5 Tyrosine type site-specific recombinase n=7 Tax=Bacteroidales RepID=C3Q7K5_9BACE Length = 376 Score = 152 bits (383), Expect = 1e-35, Method: Composition-based stats. Identities = 46/215 (21%), Positives = 87/215 (40%), Gaps = 27/215 (12%) Query: 33 RMATSTGATPAYLLAPEVSALLFYM-PDQRHHMLFATLWNTGMRIGEARMLTPESFDLDG 91 + A P L E+ ++L PD R +F+ L++ G+RI E L P + Sbjct: 182 KRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISELLDLKPHDIN--- 238 Query: 92 VRPFVRILSEKVRARRGRPPKDEVRLVP------LTDISYVRQMESWMITTRPRRREPLW 145 + +R R+G+ KD L+ LT+ + + + + W+ Sbjct: 239 ------VSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKLYKPQEWLFERYKGE----- 287 Query: 146 AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRD 205 T+ + LK+A + A + V PH RHS+ H++ K+++ L GH Sbjct: 288 PFTESIVSKKLKEAAKEA-----GITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQ 342 Query: 206 PRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILR 240 ++ E+Y + +++ P EI++ Sbjct: 343 LKTTEMYVHIADT-FKSSIRTPLDDILESDNEIVK 376 >UniRef50_D0AM75 Phage integrase n=14 Tax=Bacilli RepID=D0AM75_ENTFC Length = 301 Score = 152 bits (383), Expect = 1e-35, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 77/218 (35%), Gaps = 34/218 (15%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEAR 80 S + P + E+ AL + D R+ L L+ +G+R+ E Sbjct: 96 ENPFSYVHLKKKNLRLPRFFYENEMQALFDSVAGDSPLDLRNRALLEVLYGSGIRLSECS 155 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMI 134 L+ D D + G+ K+ R PL + Y R+ ++ Sbjct: 156 SLSVSDIDFDSEVMLI----------HGKGNKE--RYAPLGSFAQDALQEYFREGRQVLM 203 Query: 135 TTRPRRREPLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHML 188 T + ++ +T + L Q ++++ D + PH RH++ H+L Sbjct: 204 TKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDS-----DIHPHMLRHTFATHLL 258 Query: 189 YHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAV 226 + + +Q L GH + + ++Y V + Sbjct: 259 NNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRS 296 >UniRef50_Q5WFP9 Site-specific tyrosine recombinase n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WFP9_BACSK Length = 300 Score = 152 bits (383), Expect = 1e-35, Method: Composition-based stats. Identities = 48/209 (22%), Positives = 88/209 (42%), Gaps = 35/209 (16%) Query: 34 MATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESFD 88 + P +L E+ L +P ++R + L+ TGMR+ E ML + +D Sbjct: 104 LPKQKTRLPTFLYEEEMEHWLLALPANKPLEKRDKAIIELLYATGMRVSECSMLALDQWD 163 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR-------- 140 V VR+ G+ K+ R VP+ ++ V +ES++ RP+ Sbjct: 164 --RVSETVRVF--------GKGRKE--RYVPVGKMA-VSAVESYIHEARPKLLRANDPTS 210 Query: 141 ----REPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 A++D ++R +++ + A ++PH RHS+ H+L + Sbjct: 211 HLFLNYRGGALSDRSIRKIVEKRLDEAAMQ-----KKISPHAIRHSFATHLLNAGADLRA 265 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATLA 225 +Q L GH+ ++ +VYT V + A Sbjct: 266 VQELLGHQSLKTTQVYTHVSKERLYAVYK 294 >UniRef50_C7PUZ0 Tyrosine recombinase XerD n=2 Tax=Sphingobacteriales RepID=C7PUZ0_CHIPD Length = 316 Score = 152 bits (383), Expect = 1e-35, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 80/203 (39%), Gaps = 25/203 (12%) Query: 35 ATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESFDL 89 + P L E+ ++ + QR+ + T+++ G+R+ E L Sbjct: 121 PKTKRQLPDVLSFEEIEQIIGQIKAGTPEGQRNRAILETMYSCGLRVSEVTNLQISQLHF 180 Query: 90 DGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR-----PRRREPL 144 D F+R++ G+ K+ RLVP+ + V+ + + R + +E + Sbjct: 181 DA--GFIRVV--------GKGDKE--RLVPIGSDA-VKYINIYKDEVRVHVPVKKGQEDI 227 Query: 145 WAVTDET--MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAG 202 + + + V + V+PHTFRHS+ H++ + +Q + G Sbjct: 228 LFLNRRGSALTRVMIFLVIKELTAAAGIDKQVSPHTFRHSFATHLVEGGADLRAVQEMLG 287 Query: 203 HRDPRSMEVYTRVFALDMAATLA 225 H + E+YT + + TL Sbjct: 288 HESITTTEIYTHLDREYLRDTLQ 310 >UniRef50_Q11RL1 Site-specific recombinase n=15 Tax=Bacteroidetes RepID=Q11RL1_CYTH3 Length = 299 Score = 152 bits (383), Expect = 1e-35, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 76/201 (37%), Gaps = 23/201 (11%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYM-----PDQRHHMLFATLWNTGMRIGEAR 80 SL P L PE+ +L + R+ + TL++ G+R+ E Sbjct: 95 EDPSSLIDSPKLGRKLPDTLSFPEIEQILLAIDLSTPEGMRNRAMLETLYSCGLRVSELT 154 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMI 134 L + D FV++L G+ K+ RLVP+ + Y ++ + Sbjct: 155 DLKISNLFFD--DGFVKVL--------GKGNKE--RLVPIGRDARKYIGMYRNEVRCHLD 202 Query: 135 TTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPR 194 + + + + + A + V+PHTFRHS+ H++ Sbjct: 203 IVKGAENYVFLNRRGNKLSRVMVFTIIKNLAVKIGLKKTVSPHTFRHSFATHLIEGGADL 262 Query: 195 KVIQALAGHRDPRSMEVYTRV 215 + +Q + GH + E+YT + Sbjct: 263 RAVQEMLGHESITTTEIYTHL 283 >UniRef50_A9DNU9 Tyrosine type site-specific recombinase n=2 Tax=Bacteria RepID=A9DNU9_9FLAO Length = 428 Score = 151 bits (382), Expect = 1e-35, Method: Composition-based stats. Identities = 38/196 (19%), Positives = 75/196 (38%), Gaps = 25/196 (12%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGV 92 + P L E LL +P+ +H + +++ G+R+ E L S L+ Sbjct: 241 DRPKRSKPLPIVLSQKETIQLLKSIPNLKHKTILTVIYSCGLRVSELIDLKLSSIYLEEN 300 Query: 93 RPFVRILSEKVRARRGRPPKDEVRLVPLT------DISYVRQMESWMITTRPRRREPLWA 146 K+ G+ KD + + E ++I + + Sbjct: 301 ---------KIHIVAGKGKKDRYVTLAVRTKKLIKIYIKKYAPEHYLIEGQKGGK----- 346 Query: 147 VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDP 206 +++ ++K+ A + VTPHT RHS+ H+L + IQ + GH++ Sbjct: 347 YATSSIQKFIKKYSNEA-----GLTKNVTPHTLRHSFATHLLEKGISLRYIQYILGHQNS 401 Query: 207 RSMEVYTRVFALDMAA 222 ++ E+YT + + Sbjct: 402 KTTEIYTHITQTGIEN 417 >UniRef50_A6DQI4 Tyrosine recombinase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DQI4_9BACT Length = 292 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 50/211 (23%), Positives = 85/211 (40%), Gaps = 34/211 (16%) Query: 35 ATSTGATPAYLLAPEVSALLFYMPDQ-----RHHMLFATLWNTGMRIGEARMLTPESFDL 89 A + P YL PE+ LL + R+ + L++ G+RI E L +SF+ Sbjct: 98 ARLSRLLPDYLSLPEIERLLHIYDEAIPLQFRNKFIIELLYSCGLRISELCGLRTDSFNY 157 Query: 90 DGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWA--- 146 + F+R+ +G+ K+ R VP ++ RP+ + Sbjct: 158 ES--GFLRV--------KGKGSKE--RSVPFG-TQVASMSRQYIKNIRPQLCKKNNPPEL 204 Query: 147 --------VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQ 198 +T + +LK+A +AE + + PH RHS+ H+L + ++IQ Sbjct: 205 IVSNNGRPLTRSRVWQFLKEAAIKAE-----INKNLHPHVLRHSFASHLLSNNADLRIIQ 259 Query: 199 ALAGHRDPRSMEVYTRVFALDMAATLAVPFT 229 L GH D + E+YT V + F Sbjct: 260 ELLGHADIATTEIYTHVEKTRLQNIHQKFFP 290 >UniRef50_C8R2R7 Tyrosine recombinase XerD n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2R7_9DELT Length = 356 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 53/214 (24%), Positives = 88/214 (41%), Gaps = 28/214 (13%) Query: 25 FATALSLRRMATSTGATPAYLLAPEVSALLF------YMPDQRHHMLFATLWNTGMRIGE 78 +L + A P L + EV LL + R+H + L+ TGMR+ E Sbjct: 152 GHDPAALLDLPKIGRALPKVLSSAEVEQLLAPPAPPASILALRNHAMLHLLYATGMRVSE 211 Query: 79 ARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP 138 L + + +RIL G+ K+ RLVP + + + M ++ RP Sbjct: 212 LVKLPVAAVN---QAGHLRIL--------GKGSKE--RLVPFGEAAR-QAMAVYITQARP 257 Query: 139 R-----RREPLWAVTDETM--RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHR 191 R R + L+ T R Q VR++ + + ++PH RHS+ H+L H Sbjct: 258 RLLKKRRSDFLFVTGRGTAMTRLRFWQIVRKSARER-GIAREISPHVLRHSFATHLLEHG 316 Query: 192 QPRKVIQALAGHRDPRSMEVYTRVFALDMAATLA 225 + +Q + GH D + ++YT V + A Sbjct: 317 ADLRAVQVMLGHADIATTQIYTHVDTNRLKAIHR 350 >UniRef50_Q2GEQ3 Tyrosine recombinase XerD n=2 Tax=Neorickettsia RepID=Q2GEQ3_NEOSM Length = 305 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 83/211 (39%), Gaps = 14/211 (6%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPD-----QRHHMLFATLWNTGMRIGEARMLTPESF 87 + T P YL EV +LL ++ R + + L+++GMR+ E + Sbjct: 100 ELPKKTLVLPRYLTKEEVFSLLTFLEAGQPATLRLYAILEILYSSGMRVSELINMKVSDI 159 Query: 88 D-LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWA 146 L + + I+ + + R K ++++ L SY + W+ R+ P+ Sbjct: 160 RPLLNGQQHIIIVGKGRKERILPFSKKAIQVLKLYLTSY-QSNSPWLFPGAGRKDRPMS- 217 Query: 147 VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDP 206 R L Q ++ ++PH RHS+ H+L + KV+Q L GH Sbjct: 218 ------RQRLGQLLKELALKCKIDPKRISPHVIRHSFATHLLDNGMDIKVVQDLLGHAQI 271 Query: 207 RSMEVYTRVFALDMAATLAVPFTGDGRDAAE 237 + ++YT + + + ++ + Sbjct: 272 TTTQIYTHISQHKLHKEIEAKHPLSSKEIGK 302 >UniRef50_P46352 Tyrosine recombinase xerD n=98 Tax=Bacteria RepID=XERD_BACSU Length = 296 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 80/202 (39%), Gaps = 26/202 (12%) Query: 36 TSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESFDLD 90 + A P L EV LL R + L+ TG+R+ E M+ ++ D+ Sbjct: 103 KTERALPKVLALNEVERLLDTPKLTSPFGYRDKAMLELLYATGIRVSE--MIELKTADVH 160 Query: 91 GVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREP------- 143 F+R G+ K+ R+VP+ + + +E +M R + + Sbjct: 161 LSMGFIRCF--------GKGRKE--RIVPIGEAA-ASAIEEYMTKARGKLLKNNVSDALF 209 Query: 144 LWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 L + R + +++ + +TPHT RHS+ H+L + + +Q + GH Sbjct: 210 LNHHGKQISRQGFWKNLKKIALEA-GIKKELTPHTLRHSFATHLLENGADLRAVQEMLGH 268 Query: 204 RDPRSMEVYTRVFALDMAATLA 225 D + ++YT V + Sbjct: 269 ADISTTQIYTHVTKTRLKDVYK 290 >UniRef50_UPI0000D54C0A tyrosine recombinase n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D54C0A Length = 213 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 81/198 (40%), Gaps = 19/198 (9%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMP----DQRHHMLFATLWNTGMRIGEARMLTPESFD 88 + P L +V LL + P D R L+++G+R+ EA + SF Sbjct: 13 QSPKIPETLPKALTPEDVEKLLSFQPKSKSDFRDKAFLELLYSSGLRVSEAVGVNLSSF- 71 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVT 148 + FV++L G+ K+ R++P+ + +E W++ ++ Sbjct: 72 -ESELSFVKVL--------GKGKKE--RMLPVGKFAK-EAIEKWLVEREHIAKDTNALFI 119 Query: 149 DETMRNWLKQAV--RRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDP 206 ++ + +A+ R PV+PH RHS+ H+L + IQ + GH Sbjct: 120 NKYGKRISIRAMQERIYNISIAQGLSPVSPHMLRHSFATHILESSGDLRSIQEMLGHSSL 179 Query: 207 RSMEVYTRVFALDMAATL 224 + ++YT++ +A Sbjct: 180 STTQIYTKLNFQQLAKIY 197 >UniRef50_Q01SN8 Tyrosine recombinase XerD subunit n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01SN8_SOLUE Length = 302 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 44/204 (21%), Positives = 76/204 (37%), Gaps = 26/204 (12%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESF 87 R P YL E+ ++ R + L+ +G+R+ E L Sbjct: 106 RTPRQWQTIPKYLNLEEIERIIQAPDLAKPLGLRDRAMMEVLYASGLRVSELCKLGIGDL 165 Query: 88 DLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR----RREP 143 DL+ +V G+ K RLVP+ + + + +++ + RP R Sbjct: 166 DLEY----------QVLRTTGKGNKQ--RLVPVGKAAVL-AVRAYLESGRPGLLKGRASR 212 Query: 144 LWAVTDETM---RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQAL 200 VT R + + A +TPH RHS+ H+L + +Q + Sbjct: 213 YLFVTARGGCMTRQGFWKLLA-AYGRKAGIFHGLTPHVLRHSFATHLLEGGADLRSVQVM 271 Query: 201 AGHRDPRSMEVYTRVFALDMAATL 224 GH D + ++YT V + AT+ Sbjct: 272 LGHADISTTQIYTHVMRSRLRATV 295 >UniRef50_Q6MD42 Probable XerD protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MD42_PARUW Length = 291 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 47/208 (22%), Positives = 82/208 (39%), Gaps = 28/208 (13%) Query: 29 LSLRRMATSTGATPAYLLAPEVSALLFYMPDQ------RHHMLFATLWNTGMRIGEARML 82 L L P L E+ +L +P+ R + TL+ G+R+ E L Sbjct: 95 LLLMETPKLWQLIPDVLSLEEIDRIL-AIPNIQTWRGARDKAILETLYACGLRVSELCQL 153 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR--R 140 D FVR+L G+ K+ R+VP+ + + ++ ++ Sbjct: 154 KIYDVD----DTFVRVL--------GKGGKE--RIVPIGQQA-IAAIDGYLSFREGGENS 198 Query: 141 REPLWAVTDET---MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVI 197 R +T ++ R + + V+ F ++PHTFRH++ H+L H +VI Sbjct: 199 RNEFLFITKKSKPLTRALVWKLVKFYARQASIF-KSISPHTFRHTFATHLLDHGADLRVI 257 Query: 198 QALAGHRDPRSMEVYTRVFALDMAATLA 225 Q + GH S + YT V + + Sbjct: 258 QDMLGHASINSTDRYTHVSQIRLQQAFQ 285 >UniRef50_B4D116 Integrase family protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D116_9BACT Length = 315 Score = 151 bits (382), Expect = 2e-35, Method: Composition-based stats. Identities = 43/203 (21%), Positives = 79/203 (38%), Gaps = 24/203 (11%) Query: 33 RMATSTGATPAYLLAPEVSALL-----FYMPDQRHHMLFATLWNTGMRIGEARMLTPESF 87 + + P + +V LL R L L+ +G+R+ E E+ Sbjct: 118 PLPRTERYLPETMNELQVDRLLEGISIDAPRGLRDRALLELLYASGLRVSELVNARLENL 177 Query: 88 DLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP-----RRRE 142 DLD R R +++RLVP+ + + +++ RP + Sbjct: 178 DLDA------------RIIRVTGKGNKMRLVPVGQKA-CDAIRAYLEKERPEMVGKKTGS 224 Query: 143 PLWAVTDETMRNWLK-QAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALA 201 ++ + T ++ + +A A I V PH RHS+ H+L + ++IQ + Sbjct: 225 EVFLSSRGTKLTTVRIWQIVKACAKNAGLDINVYPHLLRHSFATHLLSNGADLRIIQEML 284 Query: 202 GHRDPRSMEVYTRVFALDMAATL 224 GH D + ++YT V + A Sbjct: 285 GHADISTTQIYTHVDQQRLKAVH 307 >UniRef50_Q7UQK2 Integrase/recombinase n=1 Tax=Rhodopirellula baltica RepID=Q7UQK2_RHOBA Length = 325 Score = 151 bits (381), Expect = 2e-35, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 76/207 (36%), Gaps = 34/207 (16%) Query: 36 TSTGATPAYLLAPEVSALLFYMPD-----QRHHMLFATLWNTGMRIGEARMLTPESFDLD 90 + P L EV A L + QR L L+ TG R E L LD Sbjct: 130 KAWQRMPGVLSPNEVEAFLSAVKKSDSFWQRDRALLEVLYATGCRASEVCTLRVRDLTLD 189 Query: 91 GVRPFVRILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMITTRPRRREPL 144 EK G+ K R+VP+ + Y+ + + P + + L Sbjct: 190 ----------EKTLRCHGKGDKQ--RMVPIGGRAIRAIQLYLEESRHILADRNPGQIDEL 237 Query: 145 W------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQ 198 + A+ + +K+ +RA S ++PH+ RHS+ H+L + +Q Sbjct: 238 FLSRGGKALDRIQLWRLVKRYAKRA-----GISDEISPHSLRHSFATHLLAGGADLRQVQ 292 Query: 199 ALAGHRDPRSMEVYTRVFALDMAATLA 225 + GH ++ ++YT V + Sbjct: 293 EMLGHASIQTTQIYTHVEHSRLQRVHR 319 >UniRef50_C2CV68 Integrase/recombinase XerD n=3 Tax=Bifidobacteriaceae RepID=C2CV68_GARVA Length = 335 Score = 151 bits (381), Expect = 2e-35, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 77/228 (33%), Gaps = 51/228 (22%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMPD--------QRHHMLFATLWNTGMRIG 77 + + + P L EV ++ R L L+ TG R+ Sbjct: 106 SDPSAEVKAPKQAEHLPDVLSISEVERVIDAAGGFGSTDAVSLRDRALVEFLYATGARVS 165 Query: 78 EARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR 137 EA L E DL +E V G+ K RLVP+ + VR + ++ R Sbjct: 166 EAVGLKFEDIDL----------TESVVRLSGKGQKQ--RLVPIGKCA-VRALRDYLANAR 212 Query: 138 P---------------RRREPLWAVTDET--------------MRNWLKQAVRRAEADGV 168 P R + PL + + R +A+ RA Sbjct: 213 PILASRAQKSPATAKSRLKSPLNSSSKSANTHVIFLNKRGKSLSRQSAWEAISRAGKMA- 271 Query: 169 HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVF 216 + PHT RHS+ H++ + +Q L GH + ++YT + Sbjct: 272 KIGKELHPHTLRHSFATHLISGGADVRTVQELLGHASVTTTQIYTHIS 319 >UniRef50_D2NUA7 Site-specific recombinase XerD n=3 Tax=Actinomycetales RepID=D2NUA7_9MICC Length = 437 Score = 151 bits (381), Expect = 2e-35, Method: Composition-based stats. Identities = 43/234 (18%), Positives = 84/234 (35%), Gaps = 25/234 (10%) Query: 16 LLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALL-----FYMPDQRHHMLFATLW 70 ++P P +++R P + ++ LL R+ + L+ Sbjct: 213 IVPTDPAAPVTPPKNVKR-------LPKAVSVEDIQRLLAVPDRETATGLRNRAILEFLY 265 Query: 71 NTGMRIGEARMLTPESFDLDGV---RPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVR 127 TG R+ E + +G +I G+ K+ RLVP+ + + Sbjct: 266 ATGARVSEMLNADIDDVHFEGTLTDEDGNQITLPGYVRLFGKGNKE--RLVPIGSYA-QK 322 Query: 128 QMESWMITTRP-----RRREPLWAVTDETMRNWLKQA--VRRAEADGVHFSIPVTPHTFR 180 ++ +++ RP + V R + A + + A+ S +PH+ R Sbjct: 323 AIQDYLVRARPSLVAHGKGTAALFVNGRGGRLGRQGAWLILKEAAEAAGLSSDFSPHSMR 382 Query: 181 HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 HS+ H+L +V+Q L GH + +VYT+V + + Sbjct: 383 HSFATHLLQGGADIRVVQELLGHASIATTQVYTKVTPEGLMEVYRMAHPRAHER 436 >UniRef50_Q04F40 Tyrosine recombinase XerC subunit n=5 Tax=Leuconostocaceae RepID=Q04F40_OENOB Length = 307 Score = 151 bits (381), Expect = 2e-35, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 78/210 (37%), Gaps = 36/210 (17%) Query: 37 STGATPAYLLAPEVSALLFYMPD------QRHHMLFATLWNTGMRIGEARMLTPESFDLD 90 S P +L EV L D R+ L L+ TGMRI E LT D + Sbjct: 107 SNKKLPEFLYPAEVIEYLRAAADPQNDQYLRNSALIELLYATGMRIFEITNLTFSQIDFN 166 Query: 91 GVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWM------ITTRPRRREPL 144 ++ G+ K R++P + ++ ++ + + + Sbjct: 167 S----------QIVDITGKGKKQ--RIIPFGKPALA-SLKQYLPWREKTMQKFSEKHSYI 213 Query: 145 W------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQ 198 + +T+ LKQ +R++ + + PH RHS+ H+L + + +Q Sbjct: 214 FINTRGRQLTETGAEYILKQVSKRSK-----LTANIHPHMLRHSFATHLLNNGADIRTVQ 268 Query: 199 ALAGHRDPRSMEVYTRVFALDMAATLAVPF 228 L GH + ++YT + ++ F Sbjct: 269 ELLGHASLSTTQIYTHITTENLQENYKKFF 298 >UniRef50_D2RKK7 Tyrosine recombinase XerC n=3 Tax=Firmicutes RepID=D2RKK7_ACIFE Length = 311 Score = 150 bits (380), Expect = 3e-35, Method: Composition-based stats. Identities = 56/207 (27%), Positives = 85/207 (41%), Gaps = 29/207 (14%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPD------QRHHMLFATLWNTGMRIGEARMLTPES 86 R P +L E++ LL MPD +R + L++TG R+ E LT Sbjct: 112 RTPKLEKKLPVFLEEFEIN-LLLRMPDCTTVLGRRDRAILEFLYSTGCRVSELVGLTLTR 170 Query: 87 FDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWA 146 DL + G+ K+ RLVPL V ME ++ +R E A Sbjct: 171 VDL----------GNRYAILLGKGRKE--RLVPLGHPC-VAAMEDYLRHSRGTLMEKYQA 217 Query: 147 VTDETM------RNWLKQAVRRAEADGVHFS---IPVTPHTFRHSYIMHMLYHRQPRKVI 197 +T+ R ++VRR V + V+PHT RH++ H+L H + + Sbjct: 218 PRHQTVFVNSRGRPLSARSVRRILDKYVEMTALQKHVSPHTIRHTFATHLLDHGADLRAV 277 Query: 198 QALAGHRDPRSMEVYTRVFALDMAATL 224 Q L GH + ++YT V A + A Sbjct: 278 QELLGHVSLSTTQIYTHVTAERLTAVY 304 >UniRef50_Q7NVH1 Tyrosine recombinase xerC n=1 Tax=Chromobacterium violaceum RepID=XERC_CHRVO Length = 299 Score = 150 bits (379), Expect = 3e-35, Method: Composition-based stats. Identities = 53/225 (23%), Positives = 85/225 (37%), Gaps = 34/225 (15%) Query: 2 NNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQR 61 +N +P+R LLP A VD AL R S D R Sbjct: 88 DNPAAGLYAPKRDKLLPKALPVDGTAALLDRIEGESE-------------------LDAR 128 Query: 62 HHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLT 121 +F +++ G+R+ E L + D S+ + RG+ K+ RLVP+ Sbjct: 129 DRAIFELVYSCGLRLSETVALNLDDVDF----------SDSLLRIRGKGGKE--RLVPIG 176 Query: 122 DISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGV--HFSIPVTPHTF 179 + +R + +W+ EP + R +Q +R + V PH Sbjct: 177 AEAMLR-LRTWLGERSAGMDEPALFLGRHGHRLGGRQVEKRLRDWAIKTGAGQHVHPHML 235 Query: 180 RHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATL 224 RHS+ HML + +Q L GH + S ++YT + +A Sbjct: 236 RHSFASHMLQSSGDLRAVQELLGHANLSSTQIYTALDFQHLAKVY 280 >UniRef50_O26979 Probable tyrosine recombinase xerC-like n=3 Tax=cellular organisms RepID=XERCL_METTH Length = 311 Score = 150 bits (379), Expect = 4e-35, Method: Composition-based stats. Identities = 46/214 (21%), Positives = 81/214 (37%), Gaps = 37/214 (17%) Query: 29 LSLRRMATSTGATPAYLLAPEVSALLFYMP------------DQRHHMLFATLWNTGMRI 76 L + T + P L EV +L+ + R ++ + L+++G+R+ Sbjct: 111 LEEVKAPKRTKSLPKSLNEDEVKSLINAVEVADDGSVIRRFIKTRDRLILSLLYSSGLRV 170 Query: 77 GEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITT 136 E L D D E+ RG+ KD + L D + + ++ Sbjct: 171 SELVSLRINDIDPD----------ERTIRIRGKGDKDRIVLF---DENTRDLLMDYL-KR 216 Query: 137 RPRRREPLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYH 190 R E L+ +T ++ +K R+A VTPH RHS+ H+L + Sbjct: 217 RIHESEYLFLNRFGDPLTPRYVQMMIKNYARKA-----GIKKKVTPHILRHSFATHLLKN 271 Query: 191 RQPRKVIQALAGHRDPRSMEVYTRVFALDMAATL 224 + IQ L GH + + ++YT V + Sbjct: 272 GVDIRAIQQLLGHSNLSTTQIYTSVDMQTLKNVY 305 >UniRef50_C3RL48 Tyrosine recombinase xerC n=4 Tax=Bacteria RepID=C3RL48_9MOLU Length = 304 Score = 150 bits (379), Expect = 4e-35, Method: Composition-based stats. Identities = 37/200 (18%), Positives = 80/200 (40%), Gaps = 35/200 (17%) Query: 42 PAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV 96 P +L E+ LL + R+ + ++ +G+R E L + D + + F+ Sbjct: 114 PDFLFPEEILGLLDSIETKDDLGIRNKAMMELMYASGLRCSEVVNLQLSNIDFNQMVLFI 173 Query: 97 RILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMITTRPRRREPLW----- 145 G+ KD R VP D + Y+++ ++ + ++ Sbjct: 174 ----------HGKGNKD--RYVPFHDYAGEWLIKYIQEARENLM-IKNEGHNFVFVNKFG 220 Query: 146 -AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHR 204 +T+ + N + + +R ++ + + PHT RHS+ H+L + +Q L GH Sbjct: 221 NPLTNRGVENIVDRIMRLYDS-----TKKIHPHTIRHSFATHLLNAGADIRTVQELLGHE 275 Query: 205 DPRSMEVYTRVFALDMAATL 224 + + ++YT + + Sbjct: 276 NLSTTQIYTHISRDHLKEVY 295 >UniRef50_A6U170 Tyrosine recombinase xerC n=66 Tax=Staphylococcaceae RepID=XERC_STAA2 Length = 298 Score = 150 bits (379), Expect = 4e-35, Method: Composition-based stats. Identities = 40/206 (19%), Positives = 74/206 (35%), Gaps = 34/206 (16%) Query: 34 MATSTGATPAYLLAPEVSALLFYM-----PDQRHHMLFATLWNTGMRIGEARMLTPESFD 88 P + E+ AL + + R ++ L+ TG+R+ E + + D Sbjct: 99 HPKKEKYLPQFFYEEEMEALFKTVEEDTSKNLRDRVILELLYATGIRVSELVNIKKQDID 158 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQ-MESWMITTRPRR------- 140 G+ K+ R VP +Y RQ +E+++ +P + Sbjct: 159 F----------YANGVTVLGKGSKE--RFVPFG--AYCRQSIENYLEHFKPIQSCNHDFL 204 Query: 141 --REPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQ 198 A+T+ +R L V+R + PH RH++ H+L + +Q Sbjct: 205 ILNMKGEAITERGVRYVLNDIVKRTAGVS-----EIHPHKLRHTFATHLLNQGADLRTVQ 259 Query: 199 ALAGHRDPRSMEVYTRVFALDMAATL 224 +L GH + + YT V + Sbjct: 260 SLLGHVNLSTTGKYTHVSNQQLRKVY 285 >UniRef50_UPI0001C31A82 tyrosine recombinase XerD n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31A82 Length = 320 Score = 150 bits (379), Expect = 4e-35, Method: Composition-based stats. Identities = 42/194 (21%), Positives = 75/194 (38%), Gaps = 26/194 (13%) Query: 39 GATPAYLLAPEVSALLFYMPD-----QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVR 93 P L EV LL R L ++ G+R EA + + D+D Sbjct: 123 KKLPKVLSRDEVQHLLSQPRGTGPAALRDRALLELMYACGLRASEAVDMQLDELDVD--- 179 Query: 94 PFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP-------RRREPLWA 146 + + G+ K+ RLVP+ + + + ++ RP +R + Sbjct: 180 -------DGILRANGKGNKE--RLVPIGSKA-LDALRHYLTRGRPQMVGLREEKRVFVNQ 229 Query: 147 VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDP 206 R L + V+R A ++PHT RH++ H+L + +Q + GH D Sbjct: 230 RGHGLTRQGLYKIVQR-HARTAGLGDKMSPHTLRHTFATHLLAGGCDLRSLQEMLGHADI 288 Query: 207 RSMEVYTRVFALDM 220 + ++YT + A + Sbjct: 289 ATTQIYTHLSAERL 302 >UniRef50_C0W9S4 Tyrosine recombinase xerC n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9S4_9FIRM Length = 302 Score = 150 bits (378), Expect = 5e-35, Method: Composition-based stats. Identities = 50/212 (23%), Positives = 80/212 (37%), Gaps = 37/212 (17%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESF 87 + P +L E++ LL QR L L++TG R+ E LT Sbjct: 103 KTPKLEKKLPVFLEEFEMNHLLELPDLSTELGQRDRALLEFLYSTGCRVSELVGLTLTRL 162 Query: 88 DLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPL--- 144 DL + G+ K+ R+VPL +R M +++ R E Sbjct: 163 DLSNRYALL----------LGKGHKE--RIVPLGHPC-IRAMNAYLTGARRVLMEKYEVP 209 Query: 145 -----------WAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQP 193 +T ++R L + V A V+PHT RH++ H+L H Sbjct: 210 SHDFIFVNHRGTPLTARSVRRILDRYVEMA-----SIQKHVSPHTIRHTFATHLLDHGAD 264 Query: 194 RKVIQALAGHRDPRSMEVYTRVFALDMAATLA 225 + +Q L GH + ++YT V A +A+ Sbjct: 265 LRSVQELLGHASLSTTQIYTHVTADRIASVYK 296 >UniRef50_Q02C57 Phage integrase family protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02C57_SOLUE Length = 303 Score = 150 bits (378), Expect = 5e-35, Method: Composition-based stats. Identities = 47/204 (23%), Positives = 80/204 (39%), Gaps = 23/204 (11%) Query: 31 LRRMATSTGATPAYLLAPEVSALLFYMPD--------QRHHMLFATLWNTGMRIGEARML 82 L R + P + A +V++L+ + R +F L+ G+R+ E L Sbjct: 106 LVRTPKAPKKLPEVMTADQVNSLIDGVGGVELERPHPARDRAIFELLYGCGIRVSELAGL 165 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRRE 142 E D +E RG+ K+ R VPL + + +E ++ R + Sbjct: 166 NLEDID----------RTEGWLRVRGKGKKE--RQVPLPGQA-AQSLERYLAERPVAREQ 212 Query: 143 PLWAVTDETMRNWLK--QAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQAL 200 P V R + + + A + + PH+FRH+Y H+L + IQ L Sbjct: 213 PAVFVNHRRARLTTRGISGIVKLYATYLSNDPGIHPHSFRHAYATHLLADGADLRAIQEL 272 Query: 201 AGHRDPRSMEVYTRVFALDMAATL 224 GH + + YT+V D+ A Sbjct: 273 LGHARLSTTQKYTQVSLTDLMAVY 296 >UniRef50_C4UMA5 Site-specific recombinase in afa region n=1 Tax=Yersinia ruckeri ATCC 29473 RepID=C4UMA5_YERRU Length = 234 Score = 150 bits (378), Expect = 5e-35, Method: Composition-based stats. Identities = 90/112 (80%), Positives = 98/112 (87%) Query: 1 MNNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ 60 M+NVIPLQNSPER+S L IAPGVDFATAL+LRRMAT+ G TP YLLAPE+SALL YMPDQ Sbjct: 89 MSNVIPLQNSPERISRLSIAPGVDFATALALRRMATANGKTPFYLLAPEISALLHYMPDQ 148 Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPK 112 RHH LF+TLWNTG RIGEA + PESF LDG RPFVRILSEKVR RRGRPP+ Sbjct: 149 RHHFLFSTLWNTGARIGEACSMQPESFILDGPRPFVRILSEKVRTRRGRPPR 200 >UniRef50_Q5LEL4 Putative tyrosine recombinase n=2 Tax=Bacteroides fragilis RepID=Q5LEL4_BACFN Length = 294 Score = 150 bits (378), Expect = 5e-35, Method: Composition-based stats. Identities = 46/215 (21%), Positives = 87/215 (40%), Gaps = 27/215 (12%) Query: 33 RMATSTGATPAYLLAPEVSALLFYM-PDQRHHMLFATLWNTGMRIGEARMLTPESFDLDG 91 + A P L E+ ++L PD R +F+ L++ G+RI E L P + Sbjct: 100 KRAKRERTLPDVLSKEEIKSILDATGPDIRLFCMFSLLYSAGLRISELLDLKPHDIN--- 156 Query: 92 VRPFVRILSEKVRARRGRPPKDEVRLVP------LTDISYVRQMESWMITTRPRRREPLW 145 + +R R+G+ KD L+ LT+ + + + + W+ Sbjct: 157 ------VSRSLIRVRQGKGRKDRYTLLSKPLVRKLTEYTKLYKPQEWLFERYKGE----- 205 Query: 146 AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRD 205 T+ + LK+A + A + V PH RHS+ H++ K+++ L GH Sbjct: 206 PFTESIVSKKLKEAAKEA-----GITKRVYPHLLRHSFATHLIEQGTDLKIVKELLGHNQ 260 Query: 206 PRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILR 240 ++ E+Y + +++ P EI++ Sbjct: 261 LKTTEMYVHIADT-FKSSIRTPLDDILESDNEIVK 294 >UniRef50_B7IFN3 Tyrosine recombinase xerC n=3 Tax=Thermotogaceae RepID=XERC_THEAB Length = 283 Score = 149 bits (377), Expect = 6e-35, Method: Composition-based stats. Identities = 51/201 (25%), Positives = 82/201 (40%), Gaps = 23/201 (11%) Query: 25 FATALSLRRMATSTGATPAYLLAPEVSALLFYMPD---QRHHMLFATLWNTGMRIGEARM 81 + + + P +L EVS+L+ + R + L+ G+RI E Sbjct: 92 YENPMERIKHPRIRRKIPDFLTEDEVSSLIGAFNEENELRQKTAISLLYYAGLRISELCN 151 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR- 140 L + PF+R+ G+ KD RLVPL D + ++ ++ P+ Sbjct: 152 LRTTDISF--IPPFLRVEM-------GKGRKD--RLVPLPD-KVIPILKKYIDLENPKIF 199 Query: 141 --REPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQ 198 V T+ WLK+ V+RA + V PHT RHSY H++ KV+Q Sbjct: 200 VFENGKKHVHPSTVFRWLKEGVKRA-----NIKKDVHPHTLRHSYATHLIRKGVNIKVVQ 254 Query: 199 ALAGHRDPRSMEVYTRVFALD 219 L GH + + +Y V + Sbjct: 255 ELLGHTNLSTTSIYLHVADQE 275 >UniRef50_C5AC95 Tyrosine recombinase XerD n=82 Tax=cellular organisms RepID=C5AC95_BURGB Length = 341 Score = 149 bits (377), Expect = 7e-35, Method: Composition-based stats. Identities = 51/207 (24%), Positives = 86/207 (41%), Gaps = 34/207 (16%) Query: 35 ATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESFDL 89 A PA L +V ALL R + ++ +G+R+ E ML L Sbjct: 147 AKQPARFPATLSEAQVEALLAAPEVGTALGLRDRTMLELMYASGLRVSELVMLKTVEVGL 206 Query: 90 DGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP-----RRREPL 144 + + V G+ K+ RLVP ++++ +E ++ RP R + L Sbjct: 207 N----------DGVVRVMGKGSKE--RLVPFGEVAHG-WIERYLREARPALLGARTSDAL 253 Query: 145 W------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQ 198 + +T + N +K+ RAE ++PHT RH++ H+L H +V+Q Sbjct: 254 FVTARGEGMTRQQFWNIIKRHAMRAEIRA-----HLSPHTLRHAFATHLLNHGADLRVVQ 308 Query: 199 ALAGHRDPRSMEVYTRVFALDMAATLA 225 L GH D + ++YT V + A Sbjct: 309 MLLGHSDISTTQIYTHVARERLRTLHA 335 >UniRef50_P44630 Tyrosine recombinase xerD n=84 Tax=Proteobacteria RepID=XERD_HAEIN Length = 297 Score = 149 bits (376), Expect = 7e-35, Method: Composition-based stats. Identities = 48/215 (22%), Positives = 87/215 (40%), Gaps = 36/215 (16%) Query: 24 DFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGE 78 D + LS ++ P YL +VS LL + R + L+ TG+R+ E Sbjct: 94 DPSAVLSSPKLP---SRLPKYLTEQQVSDLLNTPNVEVPLELRDKAMLELLYATGLRVTE 150 Query: 79 ARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP 138 LT E+ + + V G+ K+ R+VP+ + + + +M+ RP Sbjct: 151 LVSLTIENM----------SVQQGVVRVIGKGNKE--RIVPMGEEA-AYWVRQFMLYGRP 197 Query: 139 -----------RRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHM 187 + +T +T + +K A+ D ++PH RH++ H+ Sbjct: 198 VLLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDA----DALSPHVLRHAFATHL 253 Query: 188 LYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAA 222 + H +V+Q L GH D + ++YT V + Sbjct: 254 VNHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKR 288 >UniRef50_A6G731 Integrase/recombinase XerD n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G731_9DELT Length = 302 Score = 149 bits (376), Expect = 8e-35, Method: Composition-based stats. Identities = 50/216 (23%), Positives = 80/216 (37%), Gaps = 28/216 (12%) Query: 23 VDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIG 77 VD ++L + + P L EV L+ R L ++ TG R+ Sbjct: 98 VDPTQGIALPK---AVNKLPELLSREEVVRLIAAPGVDTPLGLRDTALLEFMYATGCRVS 154 Query: 78 EARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR 137 EA L S LD + + G+ K R+VPL D + V + +W+ R Sbjct: 155 EACDLELSSLHLD----------QGLVVLTGKGSKQ--RMVPLGDCALV-ALLAWLEEGR 201 Query: 138 PRR-----REPLWAVTDETMRNWLKQAVRRAEADGV--HFSIPVTPHTFRHSYIMHMLYH 190 P RE V R + R V + ++PH RHS+ H++ Sbjct: 202 PELVARAPREAHVFVNKRGSRLSRQGCFFRLRQHAVSAGITRDISPHKLRHSFATHLIEG 261 Query: 191 RQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAV 226 + +Q L GH D + +VYT + + + Sbjct: 262 GADLRAVQTLLGHADISTTQVYTHLSQSHVRHAYDL 297 >UniRef50_Q9F567 IntI2 protein n=38 Tax=Bacteria RepID=Q9F567_ECOLX Length = 325 Score = 149 bits (376), Expect = 8e-35, Method: Composition-based stats. Identities = 54/222 (24%), Positives = 88/222 (39%), Gaps = 38/222 (17%) Query: 35 ATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRP 94 A+ P+ + A EV +L M D R+ ++F L+ G+RI E L + FD D Sbjct: 96 ASKPRRLPSVISANEVQRILQVM-DTRNQVIFTLLYGAGLRINECLRLRVKDFDFDNG-- 152 Query: 95 FVRILSEKVRARRGRPPKDEVRLVP----LTDISYVRQMESWMITTRPR----------- 139 I + + R RL+P L + + + Q + + P Sbjct: 153 --CITVHDGKGGKSRNSLLPTRLIPAIKXLIEQARLIQQDDNLQGVGPSLPFALDHKYPS 210 Query: 140 -RREPLW------------AVTDETMRNWL-----KQAVRRAEADGVHFSIPVTPHTFRH 181 R+ W + R+ L ++A++ A S VT HTFRH Sbjct: 211 AYRQAAWMFVFPSSTLCNHPYNGKLCRHHLHDSVARKALKAAVQKAGIVSKRVTCHTFRH 270 Query: 182 SYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAAT 223 S+ H+L + + +Q L GH D ++ ++YT V A T Sbjct: 271 SFATHLLQAGRDIRTVQELLGHNDVKTTQIYTHVLGQHFAGT 312 >UniRef50_Q1G9V2 Tyrosine recombinase xerC n=28 Tax=Lactobacillus RepID=XERC_LACDA Length = 295 Score = 149 bits (376), Expect = 8e-35, Method: Composition-based stats. Identities = 48/221 (21%), Positives = 79/221 (35%), Gaps = 30/221 (13%) Query: 22 GVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ-----RHHMLFATLWNTGMRI 76 D A+ LRR P + EV ++ + D R+ + A + TGMR+ Sbjct: 90 KADPTVAIQLRR---GKKKLPEFFYQDEVGQVIRSLNDGKPLTVRNRAIVALFYATGMRL 146 Query: 77 GEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITT 136 E L + DL+ V G+ KD D + +E ++ Sbjct: 147 SELTDLKIKQLDLENGMILV----------HGKGNKDRYVFF---DQESKKYLEEYLQAA 193 Query: 137 RPR--RREP------LWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHML 188 RP + EP L + + +AV++ + PH RHS+ ML Sbjct: 194 RPSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQIF-QKAGLTAGAHPHELRHSFATAML 252 Query: 189 YHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFT 229 + + +Q L GH D + ++YT V + F Sbjct: 253 NNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTVEYRQHFP 293 >UniRef50_Q1NT18 Tyrosine recombinase XerC n=2 Tax=Deltaproteobacteria RepID=Q1NT18_9DELT Length = 339 Score = 149 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 47/219 (21%), Positives = 73/219 (33%), Gaps = 32/219 (14%) Query: 35 ATSTGATPAYLLAPEVSALLFYMPD-----QRHHMLFATLWNTGMRIGEARMLTPESFDL 89 G P L EV +LL R + L+ TG+R+ E L DL Sbjct: 133 PKGEGYLPVVLSVDEVFSLLEMPGAGDRFAARDRAILELLYATGLRVSELAGLDLAQLDL 192 Query: 90 DGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDIS-------------YVRQMESWMITT 136 VR++ G+ K+ RLVP+ + +RQ Sbjct: 193 --ADGMVRVV--------GKGNKE--RLVPMGTAAVAAIEAYLPQRQVLLRQTAGQQKEG 240 Query: 137 RPRRREPLWAVTDETMRNWLKQAVR--RAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPR 194 + R V R + R + A+ + V+PH RHS+ H+L Sbjct: 241 KKARGADPLLVNSRGGRLTSRSIERLVKMYAERAGIAARVSPHALRHSFATHLLEMGADL 300 Query: 195 KVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGR 233 +V+Q L GH + + YT + + A Sbjct: 301 RVVQELLGHASLSTTQRYTHLNLDHLTAVYDQAHPLANS 339 >UniRef50_C8WWD9 Integrase family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWD9_ALIAD Length = 307 Score = 149 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 53/202 (26%), Positives = 80/202 (39%), Gaps = 24/202 (11%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPD-----QRHHMLFATLWNTGMRIGEARMLTPESF 87 R+ P YL EV+AL+ ++ R L L+ TG+R+ E L Sbjct: 101 RLPKRDRRLPRYLHEEEVAALIDHVGGDDFVALRDRALLEFLYATGVRVSECVHLDIGDL 160 Query: 88 DLDGVRPFVRILSEKVRARR---GRPPKDEVR-LVPLTDISYVRQMESWMITTRPRRREP 143 DL F R+L + R R GR D +R +PL D + + + I R R Sbjct: 161 DLSA--GFARVLGKGGRERYVMVGRRAVDALRRYLPLRDR--MARCSAVFINRRGGR--- 213 Query: 144 LWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 +TD ++R L++ V + H RHS+ HML + +Q L GH Sbjct: 214 ---LTDRSVRRVLER-----RIQEVPGLRSIHVHGLRHSFATHMLNGGADLRSVQELLGH 265 Query: 204 RDPRSMEVYTRVFALDMAATLA 225 S ++YT +A Sbjct: 266 ASLSSTQIYTHTSREQLARAYY 287 >UniRef50_Q8KET0 Tyrosine recombinase xerD n=12 Tax=Chlorobiaceae RepID=XERD_CHLTE Length = 304 Score = 149 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 43/196 (21%), Positives = 77/196 (39%), Gaps = 27/196 (13%) Query: 34 MATSTGATPAYLLAPEVSALLFYMPD--------QRHHMLFATLWNTGMRIGEARMLTPE 85 P+ L E++ LL R + L+ TG+R+ E L Sbjct: 106 QPKLARYLPSVLTIEEMATLLDAPLKRHPTSTFMLRDKAMLEFLYATGVRVSELLGL--S 163 Query: 86 SFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR-----R 140 +L FVR+ G+ K+ RLVP+ + + M+ ++ RP Sbjct: 164 RLNLHMDDGFVRVF--------GKGSKE--RLVPVGQTA-ISWMKRYLDELRPGMMSATS 212 Query: 141 REPLWAVTDET-MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQA 199 + ++ + + + R A P++PHTFRHS+ H+L +V+Q Sbjct: 213 HDTIFLNSRGGPLSRMAAWNIVREHAVIAGIEKPISPHTFRHSFATHLLEGGADLRVVQE 272 Query: 200 LAGHRDPRSMEVYTRV 215 + GH + ++YT + Sbjct: 273 MLGHSSIIATQIYTHI 288 >UniRef50_A6KYQ9 Integrase n=60 Tax=Bacteria RepID=A6KYQ9_BACV8 Length = 313 Score = 149 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 36/196 (18%), Positives = 78/196 (39%), Gaps = 24/196 (12%) Query: 40 ATPAYLLAPEVSALLFYM-----PDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRP 94 P + E+ L+ + QR+ + TL++ G+R+ E L + Sbjct: 111 KLPEVMTVEEIDLLIGSIDRSTKEGQRNRAILETLYSCGLRVSELCNLKLSELYFE---- 166 Query: 95 FVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLW------AVT 148 E G+ K RLVP++ + ++++ + + +P + + Sbjct: 167 ------EGFIKVEGKGSKQ--RLVPISPRA-IKEIRLYFTDRNLMKIKPGFEDFVFISNF 217 Query: 149 DETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRS 208 + + + + + A + ++PHTFRHS+ H+L + IQ + GH + Sbjct: 218 GKNISRIMVFHIIKELAARIGLKKKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGT 277 Query: 209 MEVYTRVFALDMAATL 224 E+YT + + + + Sbjct: 278 TEIYTHIDRNMLRSEI 293 >UniRef50_B0VFS7 Site-specific recombinase, phage integrase family n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFS7_9BACT Length = 298 Score = 149 bits (375), Expect = 1e-34, Method: Composition-based stats. Identities = 48/205 (23%), Positives = 80/205 (39%), Gaps = 27/205 (13%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPDQ------RHHMLFATLWNTGMRIGEARMLTPES 86 + P EV LL +PD R+ + TL+++G+RI E + + Sbjct: 101 KRPKYEVPLPKCFTEEEVRTLL-SIPDTDSPFGIRNKAILETLYSSGLRISELAGIRLQD 159 Query: 87 FDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP----RRRE 142 DL R VR+ G+ K R+VPL + + + +++ RP Sbjct: 160 IDL--KRGLVRVT--------GKGNKQ--RIVPLGSYA-IEAINNYL-KVRPQFMRENSP 205 Query: 143 PLWAVTDETMRNWLKQA--VRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQAL 200 L +T KQ + + + V + +PH+ RHS+ H+L + IQ L Sbjct: 206 DLLFLTKSGKAFDTKQLDIILKRYFELVAKAKGYSPHSLRHSFATHLLSRGADLRAIQEL 265 Query: 201 AGHRDPRSMEVYTRVFALDMAATLA 225 GH + E YT + D+ Sbjct: 266 LGHSLLSTTETYTHISLEDIKEAYK 290 >UniRef50_C2D807 Possible integrase/recombinase XerD n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D807_9ACTN Length = 319 Score = 148 bits (374), Expect = 2e-34, Method: Composition-based stats. Identities = 53/230 (23%), Positives = 88/230 (38%), Gaps = 44/230 (19%) Query: 2 NNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQR 61 + +I L + P + LLP AP + ALSL+ A R Sbjct: 117 DQIIHLLDDPFKPQLLP-APKLTARKALSLKPQACFY----------------------R 153 Query: 62 HHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLT 121 + L+ G+R+ E L ++S+++ G+ K+ RLVP Sbjct: 154 DKAILEMLYGCGLRVSELCGLNQGDV----------LVSDELVRVFGKGSKE--RLVPCL 201 Query: 122 D---ISYVRQMESW--MITTRPRRREPLWAVTDETMRNWLKQAV-RRAEADGVHFSIP-V 174 SY W ++ P+ + ++ T +QAV E G + I + Sbjct: 202 GTALESYQNYCTKWRALLACSPKTTDAVFLSVRGT--RISRQAVFSLVERYGSYVGIKGL 259 Query: 175 TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATL 224 PHT RHSY HML +++Q L GH + ++YT + + + Sbjct: 260 HPHTLRHSYATHMLEGGMNLRIVQELLGHASISTTQLYTHIDLTHIRSEY 309 >UniRef50_A1RWD6 Phage integrase family protein n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RWD6_THEPD Length = 295 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 50/209 (23%), Positives = 80/209 (38%), Gaps = 19/209 (9%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGV 92 + P YL A EV ++ + R ++ L+ TG+R+ E L DL+ Sbjct: 102 ELPKREKRLPRYLEAEEVFRMVNAAENLRDKLIVLLLFTTGLRVSELVSLRVSDVDLE-- 159 Query: 93 RPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAV-TDET 151 ++ RG+ K+ RLV D + S+M + E L+ T E Sbjct: 160 --------KRTLRVRGKGSKE--RLVYFPDY-VADLLRSYM---KGLNSEWLFPSETAEH 205 Query: 152 MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEV 211 + + V + + VTPHT RHS+ L + IQ L GH + + +V Sbjct: 206 IHYTTVERVLKRLKEKAGIEKKVTPHTLRHSFATLSLAAGLDIREIQELLGHSNLNTTQV 265 Query: 212 YTRVFALDMAATLAVPFTG--DGRDAAEI 238 Y V + ++ D R A E Sbjct: 266 YAHVSRERLKRDYERVWSSLLDPRSAKEQ 294 >UniRef50_B2KBN7 Integrase family protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBN7_ELUMP Length = 295 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 82/205 (40%), Gaps = 20/205 (9%) Query: 28 ALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ-----RHHMLFATLWNTGMRIGEARML 82 L + P +L E L+ +Q R LF ++++G+R E L Sbjct: 96 PFKLLPLPKREKLLPKFLTQEETDRLIDTAANQGKLPARDKALFELIYSSGLRRSEVTGL 155 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRRE 142 + + DL+ VR++ G+ K+ RLVP+TD++ + ++ ++ T Sbjct: 156 SIKDIDLNL--GVVRVM--------GKGSKE--RLVPITDLA-IEALKEYLSTRGVYNSG 202 Query: 143 PLWAVTDETMRNWLK--QAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQAL 200 + R + + + + VT H+ RHS+ HML + + +Q + Sbjct: 203 DPLFLNRLGGRLTGDGLAYLVKNITIKANLARKVTAHSLRHSFATHMLNNGCDLRSLQEM 262 Query: 201 AGHRDPRSMEVYTRVFALDMAATLA 225 GH+ + +VYT V + Sbjct: 263 LGHKSLSATQVYTHVSLDRLKKIYG 287 >UniRef50_Q7MNQ0 Tyrosine recombinase xerD n=287 Tax=Proteobacteria RepID=XERD_VIBVY Length = 305 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 83/207 (40%), Gaps = 33/207 (15%) Query: 35 ATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESFDL 89 P + +V ALL + R + L+ TG+R+ E LT E+ L Sbjct: 110 PKLPQRLPKDISEEQVDALLDAPDPNDPVELRDKAMLELLYATGLRVTELVSLTMENISL 169 Query: 90 DGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR--------- 140 + V G+ K+ RLVP+ + + + +E+++ RP Sbjct: 170 R----------QGVVRVTGKGGKE--RLVPMGENA-IDWIETFIKQGRPALLGETSSDVV 216 Query: 141 --REPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQ 198 + +T +T + +K A D + ++PH RH++ H+L + +V+Q Sbjct: 217 FPSKRARQMTRQTFWHRIKFYAVIAGID----TDHLSPHVLRHAFATHLLNYGADLRVVQ 272 Query: 199 ALAGHRDPRSMEVYTRVFALDMAATLA 225 L GH D + ++YT V + + Sbjct: 273 MLLGHSDLSTTQIYTHVATERLKQIHS 299 >UniRef50_B0TH94 Tyrosine recombinase xerc, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TH94_HELMI Length = 340 Score = 148 bits (373), Expect = 2e-34, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 79/207 (38%), Gaps = 28/207 (13%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMP-------DQRHHMLFATLWNTGMRIGEARMLTPE 85 + P L EVS LL R+ + + +G+R+ E L Sbjct: 140 KSPKLGRPLPKTLSESEVSCLLSAAERRGDEPLALRNLAMVELFYASGLRVAELCGLDLG 199 Query: 86 SFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP------R 139 S D +VR+L G+ K+ R+VP+ + + + + ++ RP R Sbjct: 200 SVD--AGLGYVRVL--------GKGGKE--RIVPVGEQA-LEAISRYLKQGRPALARRQR 246 Query: 140 RREPLWAVTDETMRNWLKQAVRRAE--ADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVI 197 P + R ++ A ADG ++PHT RH++ H+L + + Sbjct: 247 EVSPALFLNHRGRRLSVRGAQDILSRIADGAALERGISPHTLRHTFATHLLDGGADLRSV 306 Query: 198 QALAGHRDPRSMEVYTRVFALDMAATL 224 Q + GH + ++YT V A + Sbjct: 307 QEMLGHAKLSTTQIYTHVSAERLKEIY 333 >UniRef50_B9YAX8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YAX8_9FIRM Length = 323 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 75/202 (37%), Gaps = 23/202 (11%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESF 87 R P +L ++ L R+ + T++ G+R+ E LT Sbjct: 118 RAPKLNRTIPEFLTFDQMMTLFDSFDLNDPAALRNRAILETMYACGLRVSEVCSLTLAEL 177 Query: 88 DLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR--RREPLW 145 DL+ E++ G+ K R+VP + ++ +R + E + Sbjct: 178 DLN----------ERILTVTGKGDKQ--RIVPFYKR-LRTLLTRYLRDSRALYLKEEHGF 224 Query: 146 AVTDETMRNWLKQAVRRAEADG---VHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAG 202 + +AV+ A + P+ PH RHS+ H+L + + +Q L G Sbjct: 225 VFVSQRGAPITPRAVQLILAQAGQDAGLNQPLHPHILRHSFATHLLDNGVDLRTVQELLG 284 Query: 203 HRDPRSMEVYTRVFALDMAATL 224 H + ++YT V + ++ Sbjct: 285 HSSLSTTQIYTHVTVDRLKQSV 306 >UniRef50_A8RBK4 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RBK4_9FIRM Length = 311 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 39/207 (18%), Positives = 82/207 (39%), Gaps = 21/207 (10%) Query: 28 ALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ----RHHMLFATLWNTGMRIGEARMLT 83 + R + P Y ++ LL D + L+ G+R+ E L Sbjct: 107 PVQNIRTKKAVQHLPVYFNMQDIERLLDSFRDSDAEIMDKAIVELLYGCGLRVSECCSLM 166 Query: 84 PESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREP 143 + L+ + F+R++ G+ K+ R+VP+ + +E+++ R +R Sbjct: 167 LQQVYLE--QGFLRVI--------GKGNKE--RMVPM-HARCKKALENYLTKVRKQRYAR 213 Query: 144 L-WAVTDETMRNWLKQA---VRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQA 199 + + + +Q + + + ++ H+FRHS+ H+L +V+Q Sbjct: 214 SNFVFINAKGQEITRQYIHVMIKKRLLALGLDERLSAHSFRHSFASHLLDGGADLRVVQE 273 Query: 200 LAGHRDPRSMEVYTRVFALDMAATLAV 226 L GH D + ++YT V + + Sbjct: 274 LLGHSDISTTQIYTHVQNKRLQSVYTS 300 >UniRef50_D0U650 Site-specific recombinase XerD n=1 Tax=uncultured actinobacterium RepID=D0U650_9ACTN Length = 308 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 45/209 (21%), Positives = 80/209 (38%), Gaps = 23/209 (11%) Query: 36 TSTGATPAYLLAPEVSALLFYMP------DQRHHMLFATLWNTGMRIGEARMLTPESFD- 88 S P L ++ +++ R + L+++G R+ E + Sbjct: 105 KSARRLPKALTISQIVSMIDVAYREGQPITARDQAMLELLYSSGARVSELIGINLNDLSS 164 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVT 148 +D V L RG+ K+ R+VPL + + +E++++ RP VT Sbjct: 165 IDTSDGKVTTL-----KLRGKGAKE--RIVPLGSFA-TKAVENYLVRVRPDLASKSSKVT 216 Query: 149 DETMRNWLKQAVRRA--------EADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQAL 200 N + R AD + V+PH FRHSY H+L +V+Q L Sbjct: 217 SALFLNSRGSRISRQSAWQMVLDAADAAGITEHVSPHVFRHSYATHLLNGGADIRVVQEL 276 Query: 201 AGHRDPRSMEVYTRVFALDMAATLAVPFT 229 GH + ++YT + + + A+ Sbjct: 277 LGHASVTTTQIYTLITIDKVRESYALTHP 305 >UniRef50_A4G2A1 Tyrosine recombinase XerD n=3 Tax=Proteobacteria RepID=A4G2A1_HERAR Length = 309 Score = 147 bits (372), Expect = 2e-34, Method: Composition-based stats. Identities = 47/206 (22%), Positives = 81/206 (39%), Gaps = 26/206 (12%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESF 87 R A P L +V ALL R + ++ +G+R+ E +L Sbjct: 113 RSAKQPLRIPKTLSEAQVEALLAAPDVTTPLGLRDRTMLELMYASGLRVTELVLLK---- 168 Query: 88 DLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP----RRREP 143 ++E V G+ K RLVP + + V +E ++ RP + + Sbjct: 169 ------SIEVGMNEGVLRITGKGGK--TRLVPFGEEARV-WIERYLKEARPLILDGQIDD 219 Query: 144 LWAVTDETM---RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQAL 200 VT R +++ A + P++PHT RH++ H+L H +V+Q L Sbjct: 220 ALFVTARGAAMTRQMFWTLIKK-HAAAAEINAPLSPHTLRHAFATHLLNHGADLRVVQML 278 Query: 201 AGHRDPRSMEVYTRVFALDMAATLAV 226 GH D + ++YT V + + Sbjct: 279 LGHSDISTTQIYTHVARERLKHLHQI 304 >UniRef50_C2D6I8 Tyrosine recombinase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6I8_9ACTN Length = 342 Score = 147 bits (372), Expect = 3e-34, Method: Composition-based stats. Identities = 55/229 (24%), Positives = 88/229 (38%), Gaps = 46/229 (20%) Query: 24 DFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-----QRHHMLFATLWNTGMRIGE 78 D A AL+ ++ + P L + LL + R L L+ TG RI E Sbjct: 133 DSAAALASPKIPKT---LPHVLSESSIEKLLATCQEDTVCGLRDRALLELLYATGCRISE 189 Query: 79 ARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP 138 A L D K G+ K+ R+VP+ R + ++ T RP Sbjct: 190 AAHLCVSDISFDS----------KQVRLFGKGSKE--RIVPI-YPECARILHMYLTTARP 236 Query: 139 ------------RRREPLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFR 180 + + ++ A++D+ +R + +R + + TPHT R Sbjct: 237 VLLSKQKNQAQAQTNQHVFISTRGKAMSDQALRYVFEHYMRLSHLQEI-----ATPHTMR 291 Query: 181 HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVF--ALDMAATLAVP 227 HS+ +L H + +Q L GH + ++YT V AL AA A P Sbjct: 292 HSFATELLSHGADLRSVQELLGHASLATTQIYTHVSVNALKDAARRANP 340 >UniRef50_D0U5Z8 Tyrosine recombinase XerD n=1 Tax=uncultured actinobacterium RepID=D0U5Z8_9ACTN Length = 311 Score = 147 bits (371), Expect = 3e-34, Method: Composition-based stats. Identities = 47/192 (24%), Positives = 70/192 (36%), Gaps = 30/192 (15%) Query: 41 TPAYLLAPEVSALLFYMPD-----QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 P L EV+ +L + R L L+ TG RI EA L+ D++ Sbjct: 108 IPKALSEDEVARILASVTGVDSFALRDRALLEFLYATGARISEACGLSLSDLDMES---- 163 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWM---------ITTRPRRREPLWA 146 ++ G+ K+ R+VP + +E W+ +R Sbjct: 164 ------QLVRLFGKGSKE--RIVPFGSHAKA-ALEEWLGAGGRTMLVSEQWAKRDHADAV 214 Query: 147 VTDETMRNWLKQAVRRA---EADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 +QA R A V+PH RHS HML H +++Q L GH Sbjct: 215 FLGSRGTRLSRQAAWRIVQKFAQIAEVGDEVSPHVLRHSCATHMLIHGADLRIVQELLGH 274 Query: 204 RDPRSMEVYTRV 215 + +VYTRV Sbjct: 275 ASVSTTQVYTRV 286 >UniRef50_D2R836 Tyrosine recombinase XerC n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R836_9PLAN Length = 323 Score = 147 bits (371), Expect = 3e-34, Method: Composition-based stats. Identities = 48/218 (22%), Positives = 85/218 (38%), Gaps = 44/218 (20%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESF 87 R P +L E+ LL P R + TL++ G+R+ E + E Sbjct: 101 RNPRKDRKLPHFLAGDELGKLLEAPPADDPAGLRDRAMLETLYSAGLRVSELVGMNDEDL 160 Query: 88 DLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMIT------------ 135 DLD E V RG+ K+ RL PL + +R ++ W+ Sbjct: 161 DLD----------EGVVRIRGKGSKE--RLAPLGSFA-LRAIKKWLAHRKLASISVSSTR 207 Query: 136 ---TRPRRREPLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMH 186 ++ P++ +T ++ L++ ++ D + TPHT RH++ H Sbjct: 208 KSASKAGHGTPVFTNKFGKRLTTRSVARMLEKYLKLTGLD-----LRTTPHTLRHTFATH 262 Query: 187 MLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATL 224 +L + +Q L GH+ + ++YT V + A Sbjct: 263 LLDRGADIRSVQELLGHKSLVTTQIYTHVSTAALKAVY 300 >UniRef50_C7N4T8 Tyrosine recombinase XerD n=7 Tax=Coriobacteriaceae RepID=C7N4T8_SLAHD Length = 309 Score = 147 bits (371), Expect = 3e-34, Method: Composition-based stats. Identities = 44/228 (19%), Positives = 74/228 (32%), Gaps = 24/228 (10%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYM-----PDQRH 62 ++ + + GV L + P L EV+ LL R Sbjct: 84 LSALKGFHRFLVGEGVTKGNPADLVSLPKVPDRLPDVLSVSEVNELLDQPFKDGPLGLRD 143 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 L+ G+R E L +E + G+ ++ R+VP+ Sbjct: 144 QAALELLYGCGLRASELISLDLGDV----------FFAEGILRVMGKGSRE--RIVPIGG 191 Query: 123 ISYVRQMESWMITTRPRRREP-----LWAVTDETMRNWLKQAVRRAEADGVHFSIP-VTP 176 S R + ++ RP+ +P + R + G P + P Sbjct: 192 -SAQRVLLDYLENGRPKLAKPSKTDGAVILNARGGRLSRQALHTIVRTAGATIGRPDLHP 250 Query: 177 HTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATL 224 HT RHS+ HML + IQ + GH D + ++Y V + Sbjct: 251 HTLRHSFATHMLEGGADLRTIQEILGHSDISTTQIYVHVDRSHIREEY 298 >UniRef50_B2UNK4 Integrase family protein n=2 Tax=Verrucomicrobiaceae RepID=B2UNK4_AKKM8 Length = 295 Score = 147 bits (371), Expect = 3e-34, Method: Composition-based stats. Identities = 55/214 (25%), Positives = 88/214 (41%), Gaps = 38/214 (17%) Query: 24 DFATALSLRRMATSTGATPAYLLAPEVSALLFYMP------DQRHHMLFATLWNTGMRIG 77 D + L + R S P L VS LL + R L ++ GMR+ Sbjct: 92 DPSVFLEMPRQGLS---LPHVLDQKTVSNLLESIDIQDIPLGCRDRALLEMIYACGMRVS 148 Query: 78 EARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR 137 E ESFD D FVR+L G+ K RLVP+ S + ++ ++ R Sbjct: 149 EIINCKLESFDKD--EAFVRVL--------GKGNK--TRLVPVG-RSALDALQMYLEKGR 195 Query: 138 PR-----RREPLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMH 186 P+ + ++ +T E +R L++ R A V PH RHS+ H Sbjct: 196 PKLVRTGTKSHIFLTVRGRPLTRERIRQILRERARAA-----GLEQHVFPHILRHSFATH 250 Query: 187 MLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDM 220 +L + ++IQ + GH D + ++YT + + Sbjct: 251 LLENGADLRIIQEMLGHADISTTQIYTHLEQQRL 284 >UniRef50_D1B5G4 Integrase family protein n=2 Tax=Synergistaceae RepID=D1B5G4_THEAS Length = 297 Score = 147 bits (371), Expect = 3e-34, Method: Composition-based stats. Identities = 47/197 (23%), Positives = 73/197 (37%), Gaps = 21/197 (10%) Query: 25 FATALSLRRMATSTGATPAYLLAPEVSALLFYM-----PDQRHHMLFATLWNTGMRIGEA 79 + + PA L EV LL D R + L+ G+R E Sbjct: 96 GEDPGKVPMLPDKPSPMPAILTEGEVLRLLEATAGDAPGDLRDRAMIELLYGCGLRASEL 155 Query: 80 RMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR 139 LT + DL S RG+ D+VR++PL + +E ++ R Sbjct: 156 CSLTMKDLDL----------SSGTVRVRGKG--DKVRVLPLVGETR-SALERYL-KVRGT 201 Query: 140 RREPLWAVTDET--MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVI 197 + P++ R L + ++R + + PH RHS H+L + + Sbjct: 202 HQGPIFQGDRGGPFRREMLWKMIQRRGRQACIAASRLHPHILRHSCATHLLRRGMDLRTL 261 Query: 198 QALAGHRDPRSMEVYTR 214 Q L GH R+ EVYT Sbjct: 262 QCLLGHSSVRTTEVYTH 278 >UniRef50_B1ZQV6 Tyrosine recombinase XerD n=3 Tax=Verrucomicrobia RepID=B1ZQV6_OPITP Length = 317 Score = 147 bits (371), Expect = 3e-34, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 82/206 (39%), Gaps = 34/206 (16%) Query: 35 ATSTGATPAYLLAPEVSALLFYMPD-----QRHHMLFATLWNTGMRIGEARMLTPESFDL 89 ++ P L E++ LL R L +++G+R+ E L + DL Sbjct: 118 PKASRRIPGTLTEEEIARLLAAPTGGDARALRDRALLELFYSSGLRVSELAGLLLQQVDL 177 Query: 90 DGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP-----RRREPL 144 + F+R+ G+ K+ R+VP+ + + + +++ RP R L Sbjct: 178 EH--GFLRVF--------GKGAKE--RVVPIGGKA-IEALATYLTAGRPHFVRSRTGSQL 224 Query: 145 W------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQ 198 + ++ + +K+ +RA + V PH RHS+ H+L + IQ Sbjct: 225 FLNKNGGPLSRVMLWMLVKKYAKRA-----GLTKNVKPHGLRHSFATHLLSGGADLRAIQ 279 Query: 199 ALAGHRDPRSMEVYTRVFALDMAATL 224 + GH + ++YT V + + Sbjct: 280 EMLGHASISTTQIYTSVESQRLLEQH 305 >UniRef50_A4BJY9 Resolvase n=1 Tax=Reinekea blandensis MED297 RepID=A4BJY9_9GAMM Length = 262 Score = 147 bits (370), Expect = 4e-34, Method: Composition-based stats. Identities = 64/218 (29%), Positives = 99/218 (45%), Gaps = 21/218 (9%) Query: 23 VDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARML 82 +D+A L LR +YLL PE++ L+ ++ +LFATLW TG RI E + Sbjct: 45 IDWARFLKLRPWVLQHDPELSYLLLPEMTQLIESARTEQMRVLFATLWVTGGRISEVLAM 104 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRRE 142 TP D L ++ R G+P RLVP+ D Y ++ ++ R + Sbjct: 105 TPAHCINDDHLGQGIALPT-LKKRNGQP----YRLVPVVDPHYWAMLKRFLGEHRGGQHA 159 Query: 143 PLW---------------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHM 187 P++ A+T T++ W A+ R + + VTPHTFRHS+ ++ Sbjct: 160 PIFQSRTKTTDAKRAKPKALTSRTVQRWTDDAMERLREHY-NPGLRVTPHTFRHSFAVNA 218 Query: 188 LYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLA 225 L H + +VI GH R E Y +V +LD + Sbjct: 219 LLHGRDIQVISGWLGHASVRETERYLKVLSLDTGHLMQ 256 >UniRef50_Q7ZAJ8 Tyrosine recombinase xerD n=13 Tax=Gammaproteobacteria RepID=XERD_SHEON Length = 300 Score = 147 bits (370), Expect = 4e-34, Method: Composition-based stats. Identities = 50/216 (23%), Positives = 90/216 (41%), Gaps = 38/216 (17%) Query: 28 ALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARML 82 ++ + P L +V LL + R + L+ TG+R+ E L Sbjct: 99 PMAQIESPKLSRHLPDSLSESQVDRLLAEPNVDDPVECRDKAMLELLYATGLRVSELVGL 158 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR----- 137 T E L + VRI+ G+ K+ RLVP+ +++ + ++E ++ + R Sbjct: 159 TMEQMSL--RQGLVRII--------GKGGKE--RLVPMGEMA-ITEVEHYLTSARHELLG 205 Query: 138 --------PRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLY 189 P +R + +T +T + +K RA ++PHT RH++ H+L Sbjct: 206 HIQSDVVFPSKRSQM--MTRQTFWHRIKLYASRA-----GIETELSPHTLRHAFATHLLN 258 Query: 190 HRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLA 225 H +V+Q L GH D + ++YT V + Sbjct: 259 HGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQ 294 >UniRef50_D0W4M6 Tyrosine recombinase XerD n=1 Tax=Neisseria cinerea ATCC 14685 RepID=D0W4M6_NEICI Length = 308 Score = 147 bits (370), Expect = 4e-34, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 85/214 (39%), Gaps = 35/214 (16%) Query: 28 ALSLRRMATSTGATPAYLLAPEVSALLFYM-----PDQRHHMLFATLWNTGMRIGEARML 82 L + P + ++S LL R L ++ TG+R+ EA L Sbjct: 108 PTRLLKPPKIDKNIPTLITEQQISRLLSAPDTDTPHGLRDKALLELMYATGLRVSEAVRL 167 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP---- 138 + + DLD G+ K R+VP+ S V +E + RP Sbjct: 168 SFGNLDLD----------RGCITTLGKGNKQ--RIVPMGRES-VYWVERYYKEARPLLLK 214 Query: 139 -RRREPLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHR 191 R + L+ ++ + +K+ +A + ++PH+ RH++ H++ H Sbjct: 215 GRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIE------HISPHSLRHAFATHLVQHG 268 Query: 192 QPRKVIQALAGHRDPRSMEVYTRVFALDMAATLA 225 +V+Q + GH D + ++YT V + + + + Sbjct: 269 LDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVK 302 >UniRef50_B9XL74 Integrase family protein n=1 Tax=bacterium Ellin514 RepID=B9XL74_9BACT Length = 337 Score = 147 bits (370), Expect = 4e-34, Method: Composition-based stats. Identities = 50/233 (21%), Positives = 85/233 (36%), Gaps = 45/233 (19%) Query: 22 GVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ-------------------RH 62 GV A+ + + P +L A ++ LL R Sbjct: 117 GVVSASPIKNVSLPKMEKRLPKFLTAQQMVELLGAPLKPLATPKKKGPGRPISATVCYRD 176 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 + T+++ G+RI E LT + D + E++ RG+ K+ R VP+ + Sbjct: 177 VAILETIYSCGLRISELCGLTAQDIDWN----------EQLVRVRGKGKKE--RQVPIGE 224 Query: 123 ISYVRQMESW-MITTRPRRREPLW--------AVTDETMRNWLKQAVRRAEADGVHFSIP 173 + W + P P++ A++ ++ LK+ + A D Sbjct: 225 PALTAIRNYWSTLEQSPGGGSPVFLGETEKAAALSPRVLQQRLKKYLALAGLDP-----S 279 Query: 174 VTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAV 226 +TPH RHSY HML + +Q L GH + +VYT V + Sbjct: 280 LTPHKLRHSYATHMLDAGADLRSVQELLGHAHLITTQVYTHVSTERLKRAYDS 332 >UniRef50_C1SMY6 Site-specific recombinase XerD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMY6_9BACT Length = 312 Score = 147 bits (370), Expect = 4e-34, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 85/226 (37%), Gaps = 37/226 (16%) Query: 28 ALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARML 82 + + + ALL R ++ ++ TG+R+ E L Sbjct: 105 PARMLKFPKKEQKAFKVFNIDSIIALLDAPDKDKPAGMRDALIQELMYGTGVRVSELVGL 164 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWM------ITT 136 D G+R VR G+ K+ R+VP+ D+ ++ + ++ Sbjct: 165 NLSDIDFGGMRILVR----------GKGKKE--RIVPIADM-HIEMINDYLDVKMDICNG 211 Query: 137 RPRRREPLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYH 190 E ++ +TD ++R +++ ++ A + +PH+FRHSY H+L Sbjct: 212 YLPDNEAIFINKFGSRLTDRSVRRIVEKYLKIA-----GLPMDFSPHSFRHSYATHLLEG 266 Query: 191 RQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLA--VPFTGDGRD 234 + IQ+L GH + + YT + ++ PF D Sbjct: 267 GADLRTIQSLLGHESLTTTQKYTHLNLTELLRVYDATHPFASGKHD 312 >UniRef50_P55632 Putative integrase/recombinase y4qK n=15 Tax=Proteobacteria RepID=Y4QK_RHISN Length = 308 Score = 147 bits (370), Expect = 5e-34, Method: Composition-based stats. Identities = 59/227 (25%), Positives = 91/227 (40%), Gaps = 17/227 (7%) Query: 3 NVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRH 62 N I + + R + D+ A L + P L EV L + D +H Sbjct: 80 NSIHIAIAALRF-FFSVTLERDWVPAEVLP-LPKKPQKLPIILSPDEVQHFLGCVLDLKH 137 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 H + T + G+RI EA L P D R VR+ +G+ KD ++ Sbjct: 138 HAILTTCYAAGLRISEAVQLKPTDID--SQRMVVRV-------EQGKGQKDRYVML---S 185 Query: 123 ISYVRQMESWMITTRPRRRE-PLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRH 181 + + + RP+ P R+ + QA +A D S PVTPH+ RH Sbjct: 186 PKLLEILRDYWRMPRPKEWLFPGDRAGHPITRDAVGQACAKAH-DLSRLSKPVTPHSLRH 244 Query: 182 SYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPF 228 ++ +H+L + IQ L GHR + Y R+ + AT + PF Sbjct: 245 AFAVHLLEAGADVRTIQLLLGHRSLATTAHYLRIATNKVCAT-SSPF 290 >UniRef50_Q9JV76 Tyrosine recombinase xerD n=22 Tax=Neisseria RepID=XERD_NEIMA Length = 291 Score = 146 bits (369), Expect = 5e-34, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 82/220 (37%), Gaps = 35/220 (15%) Query: 22 GVDFATALSLRRMATSTGATPAYLLAPEVSALLFYM-----PDQRHHMLFATLWNTGMRI 76 G+ L + P + ++S LL R L ++ TG+R+ Sbjct: 85 GIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPDTDTPHGLRDKALLELMYATGLRV 144 Query: 77 GEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITT 136 EA L + DLD G+ K R+VP+ S + + Sbjct: 145 SEAVGLNFGNVDLD----------RGCITALGKGDKQ--RMVPMGQES-AYWVGRYYTEA 191 Query: 137 RP-----RRREPLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIM 185 RP R + L+ ++ + +K+ +A ++PH+ RH++ Sbjct: 192 RPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIG------HISPHSLRHAFAT 245 Query: 186 HMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLA 225 H++ H +V+Q + GH D + ++YT V + + + Sbjct: 246 HLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQGVVK 285 >UniRef50_C6LKW3 Tyrosine recombinase XerD n=3 Tax=Clostridiales RepID=C6LKW3_9FIRM Length = 305 Score = 146 bits (369), Expect = 6e-34, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 93/230 (40%), Gaps = 53/230 (23%) Query: 36 TSTGATPAYLLAPEVSALLFYMPD-------------QRHHMLFATLWNTGMRIGEARML 82 T P +L E+ LL YM D R + L+ TG R+ E + Sbjct: 98 KETITLPRIILREEIEKLLNYMYDCLKKNVLTGYKYQLRDIAVVEVLFATGARVYEISNI 157 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR-RR 141 +S +L+ +RI+ G+ K+ R V +++ S + + + ++ Sbjct: 158 REDSVNLNS--GQIRIM--------GKGGKE--RYVQISNSSVLAVLRKYYKQNENEIKK 205 Query: 142 EPLWAV-------TDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPR 194 + + T++++R+ LK+ ++A + +TPH FRHS+ +++ Sbjct: 206 SGCFFINNRGNRYTEQSIRSMLKKYAKQA-----GIARNITPHMFRHSFATYLIEEGVDV 260 Query: 195 KVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILRTLPP 244 +Q + GH ++ ++Y + A + AEILR + P Sbjct: 261 SCVQQIRGHSSIKTTQIYIHIAA---------------KKQAEILREMHP 295 >UniRef50_D1KE10 Site-specific recombinase XerC n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KE10_9GAMM Length = 292 Score = 146 bits (368), Expect = 7e-34, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 83/217 (38%), Gaps = 20/217 (9%) Query: 23 VDFATALSLRRMATSTGATPAYLLAPEVSALL----FYMPDQRHHMLFATLWNTGMRIGE 78 V+ A L ++A S P L + +L + R + L++ G+R+ E Sbjct: 92 VNCAQGLQSPKVAKS---LPKTLDYERLVQMLTPKSSAFSELRDAAMVEVLYSCGLRVSE 148 Query: 79 ARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP 138 L E D + F+R++ G+ K VR PL + S + + ++ T Sbjct: 149 LVGLDIEDVD--ASQGFLRVM--------GKGSK--VRYTPLGE-SAQKSINRYLQKTSH 195 Query: 139 RRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQ 198 + E + Q + + A V + V PH RH+ H L + +Q Sbjct: 196 TNKALFVNNRQERISTRTVQNIIKNRALSVGIKVNVHPHMLRHAAATHFLQSSHDLRSVQ 255 Query: 199 ALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDA 235 GH+ +S +VYT + L+++ + + Sbjct: 256 EFLGHKSIKSTQVYTHLDFLELSKVYDKCHPRAKKSS 292 >UniRef50_A6CBK7 Integrase/recombinase n=5 Tax=Planctomycetaceae RepID=A6CBK7_9PLAN Length = 313 Score = 146 bits (368), Expect = 7e-34, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 82/208 (39%), Gaps = 34/208 (16%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESF 87 R + P +L ++ LL P R + TL++ G+R+ E L + Sbjct: 112 RTPRTGRKLPHFLTTDQIGTLLEAPPANQKMGLRDRAILETLYSAGLRVSELVALNVSDW 171 Query: 88 DLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRR-----E 142 D D +R+L G+ K+ R+ P+ + + + W+ + + Sbjct: 172 DQDAN--IIRVL--------GKGRKE--RIAPIGSFA-AKALTHWLEEREAKPGAHPDSD 218 Query: 143 PLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 L+ +T ++ L++ + + D +PHT RH++ H+L + Sbjct: 219 ALFLNRLKTRLTSRSVGRMLEKYLLQTGLD-----KKTSPHTLRHTFATHLLDGGADLRS 273 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATL 224 +Q L GH+ + ++YT V + T Sbjct: 274 VQELLGHKSLTTTQIYTHVSTKRLLETY 301 >UniRef50_Q49890 Tyrosine recombinase xerD n=54 Tax=Actinobacteria (class) RepID=XERD_MYCLE Length = 316 Score = 146 bits (368), Expect = 8e-34, Method: Composition-based stats. Identities = 53/218 (24%), Positives = 86/218 (39%), Gaps = 43/218 (19%) Query: 23 VDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD---------QRHHMLFATLWNTG 73 VD A ++R T P L EV ALL + R+ L L++TG Sbjct: 102 VDLDVARAVRP-PTPGRRLPKSLTVDEVLALLESVGGESRADGPLVLRNRALLELLYSTG 160 Query: 74 MRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWM 133 RI EA L + D + +G+ K RLVP+ + V+ +++++ Sbjct: 161 SRISEAVGLDVDDVD----------TQARTVLLQGKGGKQ--RLVPVGRPA-VQALDAYL 207 Query: 134 ITTRPR--RREPL-------------WAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHT 178 + R RR P ++ ++ L+ A A + V+PH Sbjct: 208 VRGRSDLARRGPGMLATPAIFLNARGGRLSRQSAWQVLQDAAEHA-----GITSGVSPHM 262 Query: 179 FRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVF 216 RHS+ H+L +V+Q L GH + ++YT V Sbjct: 263 LRHSFATHLLEGGADIRVVQELMGHASVTTTQIYTLVT 300 >UniRef50_D2LQ39 Integrase family protein n=3 Tax=Aciduliprofundum boonei T469 RepID=D2LQ39_9EURY Length = 284 Score = 146 bits (368), Expect = 8e-34, Method: Composition-based stats. Identities = 45/196 (22%), Positives = 81/196 (41%), Gaps = 20/196 (10%) Query: 23 VDFATALSLRRMATSTGATPAYLLAPEVSALLFYM-PDQRHHMLFATLWNTGMRIGEARM 81 +D A LS + P YL EV L+ + R + + + L +G+R+ E Sbjct: 90 LDTAKNLSSPKRP---RQMPKYLSEDEVKRLIEASSENPRDYAIISLLAYSGLRVSELCN 146 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRR 141 L E D + +V G+ KD + +V + +++++ T R Sbjct: 147 LKIEDVDFNERIVYVHS---------GKGDKDRIVVV---SPRVIEALQNYLYT-REDDM 193 Query: 142 EPLWA--VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQA 199 E L+A +++ R + + V++ A+ VTPH RH+ +L + IQ Sbjct: 194 EYLFASQKSNKISRVQVFRIVKKY-AEKAGIKKEVTPHVLRHTLATTLLRRGVDIRFIQQ 252 Query: 200 LAGHRDPRSMEVYTRV 215 GH + ++YT V Sbjct: 253 FLGHSSVATTQIYTHV 268 >UniRef50_Q4UYY0 Tyrosine recombinase xerC n=153 Tax=Gammaproteobacteria RepID=XERC_XANC8 Length = 322 Score = 145 bits (367), Expect = 9e-34, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 76/215 (35%), Gaps = 28/215 (13%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPD----QRHHMLFATLWNTGMRIGEARMLTPESFD 88 R + P L A E L+ D R L +++G+R+ E L D Sbjct: 125 RAPKAPRKLPQVLDADEAVRLVEVPTDAPLGLRDRALLELFYSSGLRLSELCALRWRDLD 184 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWA-- 146 LD + G+ K RLVP+ + V + +W + + ++ Sbjct: 185 LDS----------GLVTVLGKGGKQ--RLVPVGSHA-VAALRAWQRDSGGSAQTHVFPGR 231 Query: 147 ----VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAG 202 ++ ++ +KQ R V PH RHS+ H+L + +Q L G Sbjct: 232 AGGAISQRAVQIRIKQLAVRQ-----GMFKHVHPHMLRHSFASHILESSGDLRGVQELLG 286 Query: 203 HRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAE 237 H D + ++YT + +A R A Sbjct: 287 HSDIATTQIYTHLDFQHLAKVYDAAHPRAKRKKAT 321 >UniRef50_A9F3K0 Site-specific recombinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F3K0_SORC5 Length = 323 Score = 145 bits (367), Expect = 9e-34, Method: Composition-based stats. Identities = 45/210 (21%), Positives = 76/210 (36%), Gaps = 25/210 (11%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFY-----MPDQRHHMLFATLWNTGMRIGEAR 80 AL R P L E++ L+ R + ++ G+R+ E Sbjct: 123 PCALVERPRVG--RRLPKVLSFDEIALLIEAPEQGTFKGLRDRAMLHVMYAAGLRVSEVV 180 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMI--TTRP 138 L D + + G+ K RLVPL + + +++++ T P Sbjct: 181 RLKLADID----------RRKGIVMALGKGGKR--RLVPLGEPALA-AIDAYLELRATHP 227 Query: 139 RRREPLWAVTDETMRNWLKQAVRRA---EADGVHFSIPVTPHTFRHSYIMHMLYHRQPRK 195 R +QAV + A V + P +PH RHS+ H+L + Sbjct: 228 RSAATQVLFLSPRGGPLTRQAVWKLLGGYARAVGIAKPSSPHKLRHSFATHLLEGGADLR 287 Query: 196 VIQALAGHRDPRSMEVYTRVFALDMAATLA 225 +QAL GH + + E+YT + + A Sbjct: 288 SVQALLGHANVVTTEIYTHLADDHVRAAYR 317 >UniRef50_D0WF42 Tyrosine recombinase XerD n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WF42_9ACTN Length = 315 Score = 145 bits (367), Expect = 9e-34, Method: Composition-based stats. Identities = 54/214 (25%), Positives = 78/214 (36%), Gaps = 31/214 (14%) Query: 24 DFATALSLRRMATSTGATPAYLLAPEVSALLFY-----MPDQRHHMLFATLWNTGMRIGE 78 D A AL L + P L +V+ LL R+ L+ G+R E Sbjct: 109 DPACALPLPGVPAR---LPDVLSIDQVNTLLDQEFREGPLGVRNACALELLYGCGLRASE 165 Query: 79 ARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP 138 L LD +RI+ + R R+VP+ S R + S++ RP Sbjct: 166 LSGLDAGDAFLD--EGILRIVGKGSRE----------RIVPIGG-SAARCLASYLEDARP 212 Query: 139 RRREP--------LWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYH 190 R P L A R + VR A V + PHT RHS+ H+L Sbjct: 213 LLRSPRRLTPAVMLNARGGRLSRQSIHSIVREAG--HVIGIKDLHPHTLRHSFATHLLEG 270 Query: 191 RQPRKVIQALAGHRDPRSMEVYTRVFALDMAATL 224 + IQ + GH D + ++YT V + Sbjct: 271 GADLRAIQEMLGHSDISTTQIYTHVDRTHVREEY 304 >UniRef50_C1A8W1 Tyrosine recombinase XerD n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8W1_GEMAT Length = 312 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 43/188 (22%), Positives = 73/188 (38%), Gaps = 24/188 (12%) Query: 39 GATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVR 93 P L EV+ LL R + + G+R+ E ++ + L+ Sbjct: 122 RTLPEVLSVDEVTRLLAAPGLDERLAFRDRAMLELAYGAGLRVSEWIGMSVKDVMLEDS- 180 Query: 94 PFVRILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMITTRPRRREPLWAV 147 VR+L G+ K+ RLVP+ + Y+R++ + + L Sbjct: 181 -LVRVL--------GKGNKE--RLVPIGRSAIGAVAVYLRELRPVLERGGGKGILFLNGR 229 Query: 148 TDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPR 207 R + VR+ PV+PHT RHS+ H+L + +Q + GH D Sbjct: 230 GAPLSRMGAWKLVRKYVGMA-GIEKPVSPHTLRHSFATHLLEGGADLRAVQEMLGHADIA 288 Query: 208 SMEVYTRV 215 + ++YT V Sbjct: 289 TTQIYTHV 296 >UniRef50_A1VDD4 Tyrosine recombinase XerD subunit n=12 Tax=Desulfovibrionales RepID=A1VDD4_DESVV Length = 321 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 48/210 (22%), Positives = 79/210 (37%), Gaps = 25/210 (11%) Query: 24 DFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ------RHHMLFATLWNTGMRIG 77 D A L ++A + P L E++ +L PD R + ++ G+R+ Sbjct: 115 DPALFLENPKLARN---LPDVLTRDEMATIL-ARPDLSDRLGFRDRTMLELMYAAGLRVS 170 Query: 78 EARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYV---RQMESWMI 134 E L P D D VR+ G+ K+ R+VP+ +S + W Sbjct: 171 ELCALRP--LDFDAQAGVVRVF--------GKGAKE--RIVPVHHVSCALVTAYLRDWRP 218 Query: 135 TTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPR 194 P + + + V + ++PHTFRHS+ H+L Sbjct: 219 AFSPVEPAMFLNRSGKGLSRQAVWKVVKRHVAEAGIHKDISPHTFRHSFATHLLEGGADL 278 Query: 195 KVIQALAGHRDPRSMEVYTRVFALDMAATL 224 + +Q L GH D + E+YT V A + Sbjct: 279 RSVQLLLGHADISATEIYTHVQADRLRRIH 308 >UniRef50_Q30R56 Tyrosine recombinase XerD subunit n=5 Tax=Epsilonproteobacteria RepID=Q30R56_SULDN Length = 278 Score = 145 bits (366), Expect = 1e-33, Method: Composition-based stats. Identities = 42/207 (20%), Positives = 83/207 (40%), Gaps = 28/207 (13%) Query: 33 RMATSTGATPAYLLAPEVSALLF-----YMPDQRHHMLFATLWNTGMRIGEARMLTPESF 87 + + P +L ++ L + R + + L+ TG RI E L E Sbjct: 89 KFSKIPKLLPKFLSYQQIQNALSQVDRSSVLGLRDYAMIIFLYATGARISECLALRREDI 148 Query: 88 DLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAV 147 + E + R + K+ R+VP+ ++ ++++M + + +E +W+ Sbjct: 149 E-----------GEWLHIRHAKGEKE--RIVPIAFVAKT-AVDAYMNELK-KTKEYVWS- 192 Query: 148 TDETMRNWLKQAVRRAEADGV-HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDP 206 N+ + + R A + + V+PH RHSY ++ +V+Q L GH Sbjct: 193 ------NYKGEKLSRISAYKITQKYLGVSPHVLRHSYATALIAGGADLRVVQELLGHSSL 246 Query: 207 RSMEVYTRVFALDMAATLAVPFTGDGR 233 + ++YT + D+ TL V Sbjct: 247 LTTQIYTHIQKQDLKETLEVCHPMAKE 273 >UniRef50_A0L875 Tyrosine recombinase XerD subunit n=2 Tax=Proteobacteria RepID=A0L875_MAGSM Length = 296 Score = 145 bits (365), Expect = 1e-33, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 78/201 (38%), Gaps = 26/201 (12%) Query: 34 MATSTGATPAYLLAPEVSALLFYMPDQ------RHHMLFATLWNTGMRIGEARMLTPESF 87 P L E ALL Y PD R + ++ TG+R+ E LT + Sbjct: 101 RPKPQRKLPNTLSEAETEALL-YAPDTSTELGMRDAAMLELMYATGLRVSELVTLTLDG- 158 Query: 88 DLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMITTRPRRR 141 LD FVR++ G+ K+ R+VP+ + + Y ++ Sbjct: 159 -LDEENGFVRVI--------GKGNKE--RIVPMGEAATEMVIRYRHSARQVLLKGGRCND 207 Query: 142 EPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALA 201 L R+ V+R A + P++PH RH++ H+L H + +Q + Sbjct: 208 LFLSNRGAAMTRHNFWHIVKRY-AYEANIMKPLSPHGIRHAFATHLLNHGADLRAVQMML 266 Query: 202 GHRDPRSMEVYTRVFALDMAA 222 GH D + E+YT V + Sbjct: 267 GHADISTTEIYTHVANARLKK 287 >UniRef50_B3SZY7 Putative Phage integrase family protein n=1 Tax=uncultured marine microorganism HF4000_001A02 RepID=B3SZY7_9ZZZZ Length = 298 Score = 145 bits (365), Expect = 1e-33, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 72/209 (34%), Gaps = 23/209 (11%) Query: 28 ALSLRRMATSTGATPAYLLAPEVSALLFYMPD-----QRHHMLFATLWNTGMRIGEARML 82 L P L E+ +L +P+ QR +F +++ G+R+ E Sbjct: 95 PAQLLDTPKIPRKLPNVLTIQEIDKILGIIPENAPMAQRDLAIFEMMYSCGLRVTELCDF 154 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMITT 136 D V +G+ K R VP+ I+ Y+ + + Sbjct: 155 KTSDILWDSEMIRV----------QGKGSKQ--RFVPIGPIARENLKNYLNHERNTLADK 202 Query: 137 RPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 P E + + + + + + V+PHT RHS+ H+L + Sbjct: 203 NPNVAEVFLSRNGRKLTRMMIWVLLKKWTESAEVKKEVSPHTLRHSFATHLLEGGADLRS 262 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATLA 225 +Q + GH D + +VYT + + Sbjct: 263 VQEMLGHTDITTTQVYTHLDKEHLKEVHR 291 >UniRef50_C8XHP9 Tyrosine recombinase XerD n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XHP9_NAKMY Length = 353 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 53/220 (24%), Positives = 79/220 (35%), Gaps = 45/220 (20%) Query: 35 ATSTGATPAYLLAPEVSALLFYMP--------DQRHHMLFATLWNTGMRIGEARMLTPES 86 T P L + LL R L L+ TG RI E L + Sbjct: 125 PTPARRLPKALPVEAIGRLLDAAGSADPDGPRGLRDRALLELLYATGARISEVVGLDVDD 184 Query: 87 FDL--------------DGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESW 132 DL D P V V G+ K+ RLVP+ + +R +E++ Sbjct: 185 IDLGPGRLAGRSSTDPTDPTDPQVAPPITSVVRLHGKGAKE--RLVPVGSFA-LRALEAY 241 Query: 133 MITTRP----------RRREPLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTP 176 ++ RP R L+ ++ ++ L A RRA V+P Sbjct: 242 LVRGRPVLAAAGRGAGPARGALFLNIRGGRLSRQSAWQVLADAARRAGLPASG----VSP 297 Query: 177 HTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVF 216 HT RHS+ H+L + +Q L GH + ++YT V Sbjct: 298 HTLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTLVT 337 >UniRef50_B2A335 Tyrosine recombinase xerC n=2 Tax=Clostridia RepID=XERC_NATTJ Length = 299 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 72/205 (35%), Gaps = 29/205 (14%) Query: 35 ATSTGATPAYLLAPEVSALLFYMPD----QRHHMLFATLWNTGMRIGEARMLTPESFDLD 90 P +L EV L+ D R + + +G+R+GE L ++ DL Sbjct: 102 PKKERKLPEFLSIEEVEMLINAPGDDPFGLRDKAILEVFYCSGIRLGELWGLDLQNLDLQ 161 Query: 91 GVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREP------- 143 G+ + RL PL + +E ++ RP + Sbjct: 162 ----------TGYLKVTGKGNIE--RLAPLGSFALA-AIEDYLYNARPELLKKNKSVENC 208 Query: 144 ----LWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQA 199 L + +++ V++ V+PH+ RHS+ H+L + +Q Sbjct: 209 DALFLNKFGTRISQRSIRRRVKKYVQQTAS-EHRVSPHSLRHSFATHLLEGGADLRAVQE 267 Query: 200 LAGHRDPRSMEVYTRVFALDMAATL 224 L GH + + ++YT V M Sbjct: 268 LLGHVNISTTQIYTHVNQARMTEVY 292 >UniRef50_Q1RHT1 Tyrosine recombinase xerD n=18 Tax=Rickettsieae RepID=XERD_RICBR Length = 305 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 40/212 (18%), Positives = 82/212 (38%), Gaps = 21/212 (9%) Query: 28 ALSLRRMATSTGATPAYLLAPEVSALLFYM------PDQRHHMLFATLWNTGMRIGEARM 81 L + P L ++ +LL Y R + + L+ +G+R+ E Sbjct: 92 PLLNIDLPKYQNKLPEILSIDDIKSLLEYCSQDISPEGARLNAMIHLLYASGLRVSELVS 151 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMIT 135 L + V +K+ + G+ K+ R++ + + + Y+ ++++ Sbjct: 152 LKLSDI----LSNKVSREVKKIFSVLGKGNKE--RIIVINEPAINSLVKYLVVRDNFVNK 205 Query: 136 TRPRRREPLWAVTDETM---RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQ 192 T+P+ L+ + R ++ A ++PH RHS+ H+L Sbjct: 206 TKPKNLIYLFPSSAAAGYMTRQNFAILLKSAALYAGLNPEHISPHVLRHSFASHLLEGGA 265 Query: 193 PRKVIQALAGHRDPRSMEVYTRVFALDMAATL 224 +VIQ L GH D + ++YT + + L Sbjct: 266 DLRVIQELLGHADISTTQIYTHLQTNHLKKAL 297 >UniRef50_C7LWB1 Integrase family protein n=2 Tax=Desulfovibrionales RepID=C7LWB1_DESBD Length = 312 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 56/213 (26%), Positives = 84/213 (39%), Gaps = 29/213 (13%) Query: 24 DFATALSLRRMATSTGATPAYLLAPEVSALLFY-----MPDQRHHMLFATLWNTGMRIGE 78 D AL+ ++ P L + L+ R L L+ +G+R+ E Sbjct: 102 DPCAALANPKLPKVH---PKVLNVDQAIHLVETEITLDPEGLRDLALLEVLYGSGLRVSE 158 Query: 79 ARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR- 137 A L DLD +K+ G+ K+ RLVPLT + R + ++ Sbjct: 159 ALGLDFAHVDLD----------QKLVRVLGKGRKE--RLVPLTGPAAER-LARYIEQRGA 205 Query: 138 --PRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIP--VTPHTFRHSYIMHMLYHRQP 193 P RE + R KQA R + V P ++PHT RHS+ HML Sbjct: 206 FAPAAREQAVFLGKRGGRLSRKQADRIVKEMAVRSGAPCSISPHTLRHSFASHMLQAGAD 265 Query: 194 RKVIQALAGHRDPRSMEVYTRVFALDMAATLAV 226 + +Q L GH + + YT LD+A + V Sbjct: 266 LRSVQELLGHSRISTTQRYTH---LDLAQVMRV 295 >UniRef50_C2G1G7 Integrase/recombinase n=2 Tax=Bacteroidetes RepID=C2G1G7_9SPHI Length = 357 Score = 144 bits (364), Expect = 2e-33, Method: Composition-based stats. Identities = 39/197 (19%), Positives = 76/197 (38%), Gaps = 21/197 (10%) Query: 30 SLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDL 89 + P L EV + + +++H ++ + G+R+ E L D Sbjct: 169 AEIPRPKRRSTLPKVLSQKEVKRIFNTVRNRKHLLMLQLCYGMGLRVSEVVNLKVSDIDS 228 Query: 90 DGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR----REPLW 145 ++ + G+ KD R VPL + + + + RP+ + Sbjct: 229 GRMQVLI---------EAGKGKKD--RYVPLP-TAVLDLLREYYKAYRPKTYLFEGQYGG 276 Query: 146 AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRD 205 + +++ K A++ A+ + P+ H RHSY H+L + IQ L GH D Sbjct: 277 RYSVRSVQAVFKNAMKAAK-----VNRPIGIHGLRHSYATHLLEYGTDISFIQQLLGHND 331 Query: 206 PRSMEVYTRVFALDMAA 222 ++ +Y +V + A Sbjct: 332 IKTTMLYAKVGNAQLNA 348 >UniRef50_Q1MRT1 Site-specific recombinase n=3 Tax=Desulfovibrionaceae RepID=Q1MRT1_LAWIP Length = 306 Score = 144 bits (363), Expect = 3e-33, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 81/206 (39%), Gaps = 24/206 (11%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ------RHHMLFATLWNTGMRIGEA 79 + L P L E+ LL PD R ++ L+ +G+R+ E Sbjct: 96 SNPALLIDGPKLPSLLPNILSQDEMLRLLT-TPDITNKLGFRDKVILELLYASGIRVSEL 154 Query: 80 RMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR 139 + FD D + + G+ K+ R +PL S ++ + ++ RP Sbjct: 155 IGVHVLDFDQD----------KGIIKVFGKGGKE--RYIPL-HSSAMKLLIHYVQKIRPM 201 Query: 140 RREP-LWAVTDETMRNWLKQAVRRAEADGV---HFSIPVTPHTFRHSYIMHMLYHRQPRK 195 + + + + +QA+ + + ++PHTFRH++ H+L + Sbjct: 202 FTPIEKFLFLNRSGKGLTRQAIWKIIKRYALLASINKSISPHTFRHTFATHLLEGGADLR 261 Query: 196 VIQALAGHRDPRSMEVYTRVFALDMA 221 +Q L GH D + E+YT V + + Sbjct: 262 SVQLLLGHVDMSATELYTHVQSDRLK 287 >UniRef50_B3GZ58 Tyrosine recombinase xerC n=39 Tax=Gammaproteobacteria RepID=XERC_ACTP7 Length = 306 Score = 144 bits (363), Expect = 3e-33, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 84/212 (39%), Gaps = 20/212 (9%) Query: 33 RMATSTGATPAYLLAPEVSALL----FYMPDQRHHMLFATLWNTGMRIGEARMLTPESFD 88 + ++ P + A ++ LL D R + ++++G+R+ E + L D Sbjct: 106 KAPKASKRLPKNIDAEQIGQLLTSDSHEPSDLRDLAMMELMYSSGLRLSELQGLDLGDMD 165 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWM-ITTRPRRREPLWAV 147 L G VR+L G+ K+ R+VP+ + + + W+ + + + ++ + Sbjct: 166 LAGRE--VRLL--------GKGNKE--RIVPIGSKA-LEALNRWLAVRNQFKPQDNAVFL 212 Query: 148 TDETMRNWLK--QAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRD 205 R + Q V + + + PH RHS+ HML + +Q L GH + Sbjct: 213 NKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHMLEASGDLRAVQELLGHSN 272 Query: 206 PRSMEVYTRVFALDMAATLAVPFTGDGRDAAE 237 + ++YT + +A R + Sbjct: 273 LATTQIYTHLDFQHLAKIYDAAHPRAKRKKQD 304 >UniRef50_B3DV17 Site-specific recombinase XerD n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DV17_METI4 Length = 315 Score = 144 bits (363), Expect = 3e-33, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 82/211 (38%), Gaps = 24/211 (11%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFY-MPD----QRHHMLFATLWNTGMRIGEAR 80 L + + + P +L E+ LL PD R + L+++G+R+ E Sbjct: 100 TNPLDHKELPSIQSRLPQFLTTKEIEKLLQAPFPDTPLGWRDKAILELLYSSGLRVSELI 159 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMI 134 L ES+ + + V G+ K+ R VP+ + Y+ + + ++ Sbjct: 160 SLKLESYYPEHFQIKV----------LGKGNKE--RAVPIGKCAKEALDKYIAEGRTKLL 207 Query: 135 TTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPR 194 + R L R+ ++Q + G V PH RH++ H++ + Sbjct: 208 AKKTRGEVFLNQRGQPLTRSRIRQLIIHYARLG-GIDKKVYPHLLRHTFASHLVENGADL 266 Query: 195 KVIQALAGHRDPRSMEVYTRVFALDMAATLA 225 +VIQ L GH + + ++YT V + Sbjct: 267 RVIQELLGHANIATTQIYTHVNLKHLKEIHR 297 >UniRef50_C5RBD8 Integrase/recombinase n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBD8_WEIPA Length = 308 Score = 144 bits (363), Expect = 3e-33, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 74/205 (36%), Gaps = 27/205 (13%) Query: 39 GATPAYLLAPEVSALLF------YMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGV 92 P Y E++ + R+H+L L+ TG R+ E +T ++ D Sbjct: 113 QHLPRYFYQKELTKMFDVVMTDQSALGLRNHLLLEMLYGTGARVSEIANMTLQNVDSHA- 171 Query: 93 RPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETM 152 +V G+ K R+VP + + ++ T RP +++ Sbjct: 172 ---------RVVTITGKGNK--TRIVPFGRYA-ADALAKYLKTGRPVLASKQADTSNKLF 219 Query: 153 RNWLK--------QAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHR 204 N + + + + VT H FRH++ +L ++ + +Q L GH Sbjct: 220 LNQRGAPVTTAGIEYILKQIGKKSGLTQEVTAHMFRHTFATDLLNNQADLRTVQQLLGHS 279 Query: 205 DPRSMEVYTRVFALDMAATLAVPFT 229 + ++YT V + + F Sbjct: 280 SLSTTQIYTHVTTDALQKSYRNFFP 304 >UniRef50_C9NXY9 Integron integrase IntI2 n=1 Tax=Vibrio coralliilyticus ATCC BAA-450 RepID=C9NXY9_9VIBR Length = 321 Score = 144 bits (362), Expect = 3e-33, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 85/222 (38%), Gaps = 34/222 (15%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGV 92 R AT P + EV +L ++ + + ++ L+ +G+RI E L + DL + Sbjct: 95 RHATKQRQLPVVITPNEVKQVLSHL-NGKEKLIVELLYGSGLRISECLRLRVQDIDLSNL 153 Query: 93 RPFVRILSEKVRARRGRPPKDEVRLVPLT------------------------DISYVRQ 128 VR + + R+ K V ++ L Y Sbjct: 154 SITVR-DGKGKKDRQTLLSKQCVDVLKLLIEQAEQVQIADNKHGIGPSLPYAIHKKYPNA 212 Query: 129 ME--SWMITTRPRRREPLWAVTDETMRNWL-----KQAVRRAEADGVHFSIPVTPHTFRH 181 +WM +D R+ L ++A+ RA A + VT HTFRH Sbjct: 213 FRKLAWMFIFPSPSISHSQYNSDHPSRHHLHSSVIRKALSRAVA-KTTINKKVTCHTFRH 271 Query: 182 SYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAAT 223 S+ H+L + + +Q L GH D ++ ++YT V A T Sbjct: 272 SFATHLLQAGRDIRSVQELLGHNDVKTTQIYTHVIGQHYAGT 313 >UniRef50_B6BVG8 Tyrosine recombinase XerC n=2 Tax=Betaproteobacteria RepID=B6BVG8_9PROT Length = 295 Score = 144 bits (362), Expect = 3e-33, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 78/201 (38%), Gaps = 22/201 (10%) Query: 33 RMATSTGATPAYLLAPEVSALLF----YMPDQRHHMLFATLWNTGMRIGEARMLTPESFD 88 + S P L +V L+ D R + +++G+R+ E + D Sbjct: 96 KAPKSQKKLPQTLSIDQVFNLINIPQTNFIDTRDRAILEFFYSSGLRLSELVNIHLSDID 155 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRR--EPLWA 146 +E+ G+ K R+VPL + + ++ W++ + + + Sbjct: 156 ----------TNEQTLKVLGKGNK--FRIVPLGRKA-IEALDLWILQRNKLNKLVDDEFL 202 Query: 147 VTDETMRNWLKQAVR---RAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 ++ + +A++ + A + + PH RHS+ H+L Q + +Q L GH Sbjct: 203 FLNQQGKKLTARAIQYRLKFWAQKNNIPENIHPHLLRHSFASHVLQSSQDLRAVQELLGH 262 Query: 204 RDPRSMEVYTRVFALDMAATL 224 + + ++YT + ++ Sbjct: 263 SNISTTQIYTHLDFQHLSKIY 283 >UniRef50_UPI000196CAFB hypothetical protein CATMIT_02473 n=1 Tax=Catenibacterium mitsuokai DSM 15897 RepID=UPI000196CAFB Length = 297 Score = 144 bits (362), Expect = 4e-33, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 80/224 (35%), Gaps = 41/224 (18%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPD-----QRHHMLFATLWNTGMRIGEARMLTPESF 87 + + P L E+ ++ + D +R+ + L NTGMRI E L Sbjct: 95 DLPKTDKKLPKVLSLEEIIKVIKSIDDSNPAGKRNKAMMLLLINTGMRISELVHLEINDI 154 Query: 88 DLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDIS--------------YVRQMESWM 133 + V G+ K+ RL+PL + + + ++ W+ Sbjct: 155 NHSVSNVSVV----------GKGNKE--RLIPLDEETCSYVYSYMQNDRSFFNKKNNQWL 202 Query: 134 ITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQP 193 RR +T E N L++ V G TPH RH++ +L + Sbjct: 203 FMMNDGRR-----MTRENFYNILQKLVI-----GAGVRDHFTPHMLRHTFATTLLENHCD 252 Query: 194 RKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAE 237 + IQ + GH+D + +YT V + G+ R + Sbjct: 253 LRSIQVMLGHQDISTTTIYTHVTHRQILDDYNKYHPGNARRKKD 296 >UniRef50_C6LGQ0 Tyrosine recombinase XerD n=3 Tax=Clostridiales RepID=C6LGQ0_9FIRM Length = 304 Score = 144 bits (362), Expect = 4e-33, Method: Composition-based stats. Identities = 33/191 (17%), Positives = 73/191 (38%), Gaps = 25/191 (13%) Query: 33 RMATSTGATPAYLLAPEVSALL-----FYMPDQRHHMLFATLWNTGMRIGEARMLTPESF 87 + TP L E LL R + L+ TGMR+ E + Sbjct: 109 KAPHVEKKTPEILTLEETVQLLNQPELDSAKGIRDKAMLELLYATGMRVSELISMKLTDV 168 Query: 88 DLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP---RRREPL 144 ++ R D+ R++P + + ++ ++ +R + +E Sbjct: 169 NMAMGYVLCR-------------DSDKERVIPFGTEA-EKALKRYLEESRSVLLKGKESE 214 Query: 145 WAVTDETMRNWLKQA---VRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALA 201 + + + ++ +Q + + + + +TPHT RHS+ H++ + + +Q + Sbjct: 215 FLFVNCSGKSMSRQGFWKIIKFYSAQAGITKDITPHTLRHSFGAHLVQNGADLRAVQEMM 274 Query: 202 GHRDPRSMEVY 212 GH D + ++Y Sbjct: 275 GHSDISTTQIY 285 >UniRef50_D2QLD0 Integrase family protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLD0_9SPHI Length = 390 Score = 144 bits (362), Expect = 4e-33, Method: Composition-based stats. Identities = 47/196 (23%), Positives = 72/196 (36%), Gaps = 13/196 (6%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGV 92 P EV A++ ++ LF +++TG+R+ EA L DLD Sbjct: 205 DYPRQPTKLPTVYSVDEVRAIIKATTSLKYRTLFRLIYSTGLRLSEAAHLHL--VDLDRD 262 Query: 93 RPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETM 152 R + + R G+ KD V ++ + +++ RP R A T E + Sbjct: 263 RRLITV-------RAGKGKKDRVVML---SEKLDLDINTYLNQYRPHRYLFEDASTREPI 312 Query: 153 RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVY 212 Q V H+ RHS+ H+L + IQ L GH + Y Sbjct: 313 SIRTIQQVYSNTVRFAGIVKRGGIHSLRHSFATHLLESGVDIRHIQELLGHESILTTMRY 372 Query: 213 TRVFALDMAATLAVPF 228 T V A D + L P Sbjct: 373 THVTA-DKISKLRSPL 387 >UniRef50_Q8NNZ9 Tyrosine recombinase xerC n=13 Tax=Actinomycetales RepID=XERC_CORGL Length = 308 Score = 144 bits (362), Expect = 4e-33, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 73/194 (37%), Gaps = 21/194 (10%) Query: 35 ATSTGATPAYLLAPEVSALLFYMPD------QRHHMLFATLWNTGMRIGEARMLTPESFD 88 T P L + + R + L+ TGMR+ E + D Sbjct: 117 PKITRDLPKILGEQQAGDFVENAASTNEEEFLRDSAILELLYATGMRVAELCGIDLSDID 176 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVT 148 D R VR+L G+ K+ R+VP + ++ + + +W+ +P Sbjct: 177 YD--RKMVRVL--------GKGNKE--RVVPFGESAH-KALRNWLDVRDEMTEDPKALFV 223 Query: 149 DETMRNWLKQAVRRA--EADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDP 206 + + VRR A V ++PH+ RH+ H+L + +Q L GH Sbjct: 224 GVRGQRINARQVRRIVDRAAKVTGVDHLSPHSLRHTAATHLLDGGADLRQVQELLGHSSM 283 Query: 207 RSMEVYTRVFALDM 220 ++ ++YT V + Sbjct: 284 QTTQIYTHVSNKRL 297 >UniRef50_Q01TI9 Phage integrase family protein n=6 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01TI9_SOLUE Length = 301 Score = 143 bits (361), Expect = 5e-33, Method: Composition-based stats. Identities = 50/192 (26%), Positives = 80/192 (41%), Gaps = 22/192 (11%) Query: 39 GATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRI 98 P L EV+ L+ + RH + L+ TGMR E L E D + + + Sbjct: 105 RQIPTVLSRDEVARLIAAAGNLRHRTILMALYATGMRRAELCHLRIEDIDKERMVLHI-- 162 Query: 99 LSEKVRARRGRPPKDEVRLVPLTDISYVR-------QMESWMITTRPRRREPLWAVTDET 151 R+G+ KD +P ++ +R +W+ + RR P +T++ Sbjct: 163 -------RQGKGGKDREVPLPPKLLAQLRIHYRALPHRSAWVFPSLQSRR-PDQPMTEKA 214 Query: 152 MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEV 211 + + +QA RA + V PHT RH + H+L + VIQ L GH DPR + Sbjct: 215 VWHACRQAAWRA-----GITKSVHPHTLRHCFATHLLDNGAELPVIQVLLGHSDPRDTMI 269 Query: 212 YTRVFALDMAAT 223 Y + + A Sbjct: 270 YLHLCTRQLRAA 281 >UniRef50_D2R3Y9 Integrase family protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R3Y9_9PLAN Length = 314 Score = 143 bits (361), Expect = 5e-33, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 77/204 (37%), Gaps = 27/204 (13%) Query: 36 TSTGATPAYLLAPEVSALLFYMPD-----QRHHMLFATLWNTGMRIGEARMLTPESFDLD 90 + P L + LL +R L L+ TG R E ++ ++ Sbjct: 118 KTAATIPDVLSPTVAARLLDAPQPYDPLFRRDRALLELLYATGCRASEVSVMEVRDLRIE 177 Query: 91 GVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR------RREPL 144 ++ RG+ K+ RLVPL D + +E+++ RP+ + P Sbjct: 178 ----------DRFCLARGKGSKE--RLVPLGDPALA-AVEAYLEHERPKLAAKSKQGVPP 224 Query: 145 WAVTDETMRNWLKQAVR---RAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALA 201 W + + +Q + + A ++PHT RHS+ H+L + +Q L Sbjct: 225 WLLLSSRGQRLTRQKIWELVKQYALRCGAPASMSPHTLRHSFATHLLSGGADLRQVQELL 284 Query: 202 GHRDPRSMEVYTRVFALDMAATLA 225 GH + ++YT V + + Sbjct: 285 GHASIGTTQIYTHVDQSRLKKIHS 308 >UniRef50_D1W8B5 Putative tyrosine recombinase XerD n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W8B5_9BACT Length = 321 Score = 143 bits (361), Expect = 5e-33, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 82/207 (39%), Gaps = 24/207 (11%) Query: 39 GATPAYLLAPEVSAL-----LFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVR 93 P L EV + L QR+ + L++ G+R+ E L + LD Sbjct: 111 EHLPEVLSTEEVDMIENSIDLSKPEGQRNKAIIEVLFSCGLRVSELVNLQLSNLYLD--E 168 Query: 94 PFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITT-----RPRRREPLWAVT 148 F+R+ G+ K+ RLVP+ ++++ W + +P ++ ++ Sbjct: 169 GFIRVT--------GKGNKE--RLVPI-SPKAIKELNLWFLDRNLMKIKPGEQDYVFLNR 217 Query: 149 DE-TMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPR 207 + + + + +A ++PHT RHS+ +L + IQ + GH Sbjct: 218 RGAHLTRTMILIMLKRQAQEAGIQKTISPHTLRHSFATELLKGGADLRAIQVMLGHESIG 277 Query: 208 SMEVYTRVFALDMAATLAVPFTGDGRD 234 + E+YT + + + + + +D Sbjct: 278 TTEIYTHIDTTTLREEILLHHPRNAKD 304 >UniRef50_Q2RJP7 Tyrosine recombinase XerD subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJP7_MOOTA Length = 313 Score = 143 bits (360), Expect = 5e-33, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 88/227 (38%), Gaps = 36/227 (15%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLF----YMPDQRHHMLFATLWNTGMRIGEARM 81 ++ ++L P L E+ LL R + TL+ +G+R+ E Sbjct: 99 SSPVALLSGPRREKRLPGCLSHAEMEKLLSIPATTPLGLRDRAILETLYASGIRVAELVG 158 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR-- 139 + + DLD V + R+L + R R+VPL + V+ +E+++ RP Sbjct: 159 M--DQDDLDLVAGYARVLGKGRRE----------RVVPLGRYA-VKALENYLHRARPELA 205 Query: 140 -RREP-----------LWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHM 187 RR P +T +R L V +A V+PHT RH++ H+ Sbjct: 206 ARRIPPEPRALFLNHLGGRLTTRGVRERLSHYVEKAA-----LRRGVSPHTIRHTFATHL 260 Query: 188 LYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 L +V+Q L GH + ++YT + + RD Sbjct: 261 LEGGADLRVVQELLGHIRLATTQIYTHISQSQLREVYRQFHPRASRD 307 >UniRef50_A5UKA5 Integrase-recombinase protein, phage integrase family n=2 Tax=Methanobrevibacter smithii RepID=A5UKA5_METS3 Length = 302 Score = 143 bits (360), Expect = 5e-33, Method: Composition-based stats. Identities = 34/191 (17%), Positives = 73/191 (38%), Gaps = 27/191 (14%) Query: 35 ATSTGATPAYLLAPEVSALLFYMP-------------DQRHHMLFATLWNTGMRIGEARM 81 + P +L EV LL + R ++ L+++G+R+ E Sbjct: 120 PKRIKSPPNFLTQKEVKQLLDSITWDENSDSDFRIITKLRDKLIVTLLYSSGLRVSELIN 179 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRR 141 L+ ++ + +G + + K+ R++ L D S + ++ ++ + Sbjct: 180 LSVDNVNFEGKQLSIV-------------GKNNSRVI-LLDESTKQLIQKYLEKRTQKSN 225 Query: 142 EPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALA 201 + + + Q + + + +TPH RHSY H+ K+IQ L Sbjct: 226 YLVVNKSGNPLTPRYVQLMIKKYGNESGIEKKITPHILRHSYATHLFEQGVNIKIIQQLL 285 Query: 202 GHRDPRSMEVY 212 GH + + ++Y Sbjct: 286 GHSNLSTTQIY 296 >UniRef50_C6J0X8 Phage integrase n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J0X8_9BACL Length = 380 Score = 143 bits (360), Expect = 6e-33, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 70/191 (36%), Gaps = 14/191 (7%) Query: 34 MATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVR 93 P L EV ++ + +H + + +G+R+ E L D + R Sbjct: 187 RPQKEKKLPYVLSEQEVLRVIQAPTNLKHRTMLYLAYASGLRVSEVVRLKVTDIDPE--R 244 Query: 94 PFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMR 153 +R+ R+G+ KD L+ T +++ ++ R L+ Sbjct: 245 GILRV-------RQGKGKKDRHTLLSQTAWDMIQK---YVEAERLSNSMWLFPGQHSGSH 294 Query: 154 NWLK--QAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEV 211 + Q V + V H RHS+ H+L + + IQ L GH +P + E Sbjct: 295 LHERSLQKVFQEALQTSGIRKQVGIHVLRHSFATHLLENGTDLRYIQELLGHANPSTTER 354 Query: 212 YTRVFALDMAA 222 YT V ++ Sbjct: 355 YTHVSTKNLKR 365 >UniRef50_UPI0001C31AAB integrase family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31AAB Length = 313 Score = 143 bits (360), Expect = 6e-33, Method: Composition-based stats. Identities = 54/208 (25%), Positives = 86/208 (41%), Gaps = 31/208 (14%) Query: 35 ATSTGATPAYLLAPEVSALLFYMPD-----QRHHMLFATLWNTGMRIGEARMLTPESFDL 89 P L EV+ALL +P R LF + +G+R E ML S + Sbjct: 116 PRKAQRLPYVLKPVEVAALLDRIPADTALALRDRALFELAYASGLRAEELVMLDVGSIEF 175 Query: 90 DGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP-----RRREPL 144 DG R V G+ K R+VP + + ++ + ++ RP L Sbjct: 176 DGERVRVE----------GKGAK--TRIVPAGEPA-LKAIARYLDRARPALATAESDGAL 222 Query: 145 W------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQ 198 + ++ +R L+ R+A GV + V+PH RHS+ H+L + + IQ Sbjct: 223 FLSKSGRRLSTSDVRRRLRVWARQA--AGVSTAGGVSPHALRHSFATHLLENGADLRSIQ 280 Query: 199 ALAGHRDPRSMEVYTRVFALDMAATLAV 226 L GH + +VYTRV + + + A Sbjct: 281 ELLGHASISTTQVYTRVESARLRSAYAN 308 >UniRef50_C5SKT5 Integrase family protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SKT5_9CAUL Length = 304 Score = 143 bits (360), Expect = 6e-33, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 72/217 (33%), Gaps = 28/217 (12%) Query: 35 ATSTGATPAYLLAPEVSALLFYM------PDQRHHMLFATLWNTGMRIGEARMLTPESFD 88 A P L EV AL+ R L + +GMR+ E L ++ Sbjct: 101 AKKGRPLPKILSRQEVDALIAAADAKDAHQATRLQCLIEIAYASGMRVSEIVALRLDAVQ 160 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWM-----ITTRPRRREP 143 D V + RLVPL + S ++ ++ + P Sbjct: 161 KDPAYLIV------------KGKGGTERLVPL-NPSARAAIKDYLDIRPLFLNAKDKANP 207 Query: 144 LWAVTDET----MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQA 199 + R + Q + A + V+PH RH++ H+L +V+Q Sbjct: 208 YLFCSRGAEGHLTRRRVGQLLDEAALEAGIDPARVSPHVLRHAFATHLLEGGADLRVVQT 267 Query: 200 LAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAA 236 L GH D + +VYT V + + R A Sbjct: 268 LLGHADISTTQVYTHVATERLKEVVETHHPLSKRRAG 304 >UniRef50_D2Q578 Integrase/recombinase n=3 Tax=Bifidobacterium RepID=D2Q578_9BIFI Length = 306 Score = 142 bits (359), Expect = 7e-33, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 76/235 (32%), Gaps = 46/235 (19%) Query: 22 GVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ----------------RHHML 65 GV A ++ PA L + L+ + +Q R+ + Sbjct: 89 GVTNANPAAMLMTPKIPDTLPAVLSESQAEKLMDCVDEQMPKSRTKSVRKQAVGLRNAAM 148 Query: 66 FATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISY 125 L+ TG+R+ E L D + G+ K R+VP + Sbjct: 149 LEVLYATGIRVAELVGLDVHDVAFDN----------RTMKVTGKGNKQ--RVVPFGVPA- 195 Query: 126 VRQMESWMITTRPRR-----------REPLWAVTDETMRNWLKQAVRRAEADGVHFSIPV 174 + + W+ RPR + +R + + +RA + Sbjct: 196 EQSIRRWLEDGRPRLVRARSADALFLGAQGNRIDQRVVRQVVHECAQRAGVP------DI 249 Query: 175 TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFT 229 +PH RHS H+L + +Q L GH ++ + YT V + A F Sbjct: 250 SPHALRHSAATHLLDGGADLRQVQELLGHSSLKTTQRYTHVSIEQLKARYGQAFP 304 >UniRef50_Q12Q52 Phage integrase n=12 Tax=Gammaproteobacteria RepID=Q12Q52_SHEDO Length = 296 Score = 142 bits (359), Expect = 7e-33, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 77/188 (40%), Gaps = 14/188 (7%) Query: 41 TPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILS 100 P L EVS ++ R+ + F TL++ G+R+GEA L D ++ Sbjct: 105 LPDILTPAEVSMVISLTHKLRYQVCFLTLYSMGLRLGEAVSLQIGDIDSQLMQ------- 157 Query: 101 EKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETM--RNWLKQ 158 V R + KD RL+PL + W PR P ++ R +++ Sbjct: 158 --VHIRDAKGGKD--RLIPLPQRTLQALRYYWQTHRHPRYLFPGKDGKPNSLMDRGGIQK 213 Query: 159 AVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFAL 218 A+++ H ++PH RHSY H+L + +Q L GH + YTR+ + Sbjct: 214 AMKKV-ISECHIHKSISPHNLRHSYATHLLEQGLDLRSVQQLLGHNSLNTTARYTRLTTI 272 Query: 219 DMAATLAV 226 T+ Sbjct: 273 TRKNTVES 280 >UniRef50_D2MLX1 Phage integrase, N-terminal SAM domain protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MLX1_9FIRM Length = 297 Score = 142 bits (358), Expect = 9e-33, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 90/221 (40%), Gaps = 29/221 (13%) Query: 25 FATALSLRRMATSTGATPAYLLAPEVSALLFYM-----PDQRHHMLFATLWNTGMRIGEA 79 +S + ++ P YL +V LL R+ + L+ G+RI E Sbjct: 94 GHNPMSSFKNVKTSRPLPEYLTVDQVQDLLDSFDLEDKKGLRNRCIVELLYACGLRISEC 153 Query: 80 RMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVP----LTDI--SYVRQMESWM 133 + + +VR++ G+ K+ R+VP L D+ Y+++ S+ Sbjct: 154 ANIKIQDI--HFRDYYVRVM--------GKESKE--RIVPFYKELGDLLTKYLKKYGSFS 201 Query: 134 ITTRPR-RREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQ 192 + P + A++ +++ L++ + + + PH RHS+ H+L + Sbjct: 202 QLSDPFFKGSKGKAISVRSIQLLLEK-----KGRELKLPFQLHPHVLRHSFATHLLDNGA 256 Query: 193 PRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGR 233 +++Q+L GH + + ++YT V + +A + Sbjct: 257 DLRIVQSLLGHENLSTTQIYTHVSQDTLRRVIAETHPLSHK 297 >UniRef50_Q2IIH9 Tyrosine recombinase XerD subunit n=11 Tax=Deltaproteobacteria RepID=Q2IIH9_ANADE Length = 314 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 43/228 (18%), Positives = 75/228 (32%), Gaps = 24/228 (10%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFY-----MPDQRH 62 ++ + L A V A P L EV LL R Sbjct: 93 LSAIRSLHRLLAAERVTSADPSDEIESPRPGRRLPGLLSHDEVDRLLAAPDVRSAAGIRD 152 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 + L+ TG+R+ E L +L+ +V RG+ K+ R+VP+ Sbjct: 153 RAMLELLYATGLRVSELVSLQLNDVNLE----------TRVLVARGKGDKE--RIVPVGA 200 Query: 123 IS------YVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTP 176 + Y+ ++ R + + R + + R +P Sbjct: 201 PAADAVKAYLAVARERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCARRAGIRRRI-SP 259 Query: 177 HTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATL 224 H RHS+ H+L + +Q + GH D + ++YT V + Sbjct: 260 HKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTHVKRLY 307 >UniRef50_D1AIZ1 Integrase family protein n=2 Tax=Fusobacteriaceae RepID=D1AIZ1_SEBTE Length = 307 Score = 142 bits (358), Expect = 1e-32, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 77/198 (38%), Gaps = 23/198 (11%) Query: 29 LSLRRMATSTGATPAYLLAPEVSAL-----LFYMPDQRHHMLFATLWNTGMRIGEARMLT 83 L M P L +++ L + + R ++ L+++G+R E L+ Sbjct: 105 LIYVNMPKFEKELPTVLTKDDINKLRNVIDISKVTGIRDRLIIEFLYSSGLRSSELVSLS 164 Query: 84 PESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRRE- 142 +L+ VR+L G+ K+ V + + E ++ R + Sbjct: 165 ELMINLEERE--VRVL--------GKGNKER---VTFFSENARKWYEKYISAKRNEYKNY 211 Query: 143 -PLWAVTDETMRNWLKQAVRRAEAD---GVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQ 198 P + +++RR AD + VTPH FRHS+ +L ++ + +Q Sbjct: 212 TPNIVFVNSRGERITTRSLRRLIADYAEKAGINKEVTPHVFRHSFATTLLNNKVDIRYLQ 271 Query: 199 ALAGHRDPRSMEVYTRVF 216 L GH + +VYT V Sbjct: 272 ELLGHSSISTTQVYTHVS 289 >UniRef50_Q3IDS2 Site-specific recombinase n=3 Tax=Alteromonadales RepID=Q3IDS2_PSEHT Length = 315 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 45/225 (20%), Positives = 84/225 (37%), Gaps = 23/225 (10%) Query: 19 IAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ----RHHMLFATLWNTGM 74 IA + + P L +++ LL D+ R + ++++G+ Sbjct: 103 IAKQAHYHNPAVGIKGPKFAKPLPKNLDVDQMARLLEIPDDEPLAIRDKAMMELMYSSGL 162 Query: 75 RIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMI 134 RI E + VR G+ K+ RL+P+ + + ++ W+I Sbjct: 163 RISELVGANLQDISAANGEILVR----------GKGNKE--RLIPVGSKA-LNALKKWLI 209 Query: 135 TTRPRRREP---LWAVTDETMRNWLKQAVRRAEADGV--HFSIPVTPHTFRHSYIMHMLY 189 RP+ P ++ + R ++Q R + G+ S V PH RHS+ H+L Sbjct: 210 -IRPQFANPDEVAVFLSSKKNRISVRQVRLRMQEWGIKQGISSQVHPHKLRHSFASHILE 268 Query: 190 HRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 + +Q L GH + +VYT + +A + Sbjct: 269 SSGDLRAVQELLGHSSLSATQVYTHLDFQHLAKVYDNTHPRAKKR 313 >UniRef50_B2KAP5 Integrase family protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KAP5_ELUMP Length = 291 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 39/201 (19%), Positives = 73/201 (36%), Gaps = 23/201 (11%) Query: 35 ATSTGATPAYLLAPEVSALLFYMP----DQRHHMLFATLWNTGMRIGEARMLTPESFDLD 90 T P L E+S LL + P + R + + G+R+ E L ES +L Sbjct: 98 PKLTQKIPETLTKEEISRLLSFPPKTFAEIRTLTILELFYACGLRVSELVSLRIESVNL- 156 Query: 91 GVRPFVRILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMITTRPRRREPL 144 +K G+ K R +P+ D + Y+ + E ++ + Sbjct: 157 ---------KDKWVLAYGKGAKQ--RFIPIHDRAVKVLEIYLSEREKYLKGKESASEIFI 205 Query: 145 WAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHR 204 + R + + V + PH FRH++ H+L + +Q + GH Sbjct: 206 NKNGKKISRMSVWKDVNDLGRLA-GIERSLHPHLFRHTFATHLLIGGADLRSLQEMLGHA 264 Query: 205 DPRSMEVYTRVFALDMAATLA 225 D ++ ++YT + + Sbjct: 265 DLQTTQIYTHLDVQSLKEKHK 285 >UniRef50_Q1D804 Tyrosine recombinase xerC n=9 Tax=Deltaproteobacteria RepID=XERC_MYXXD Length = 300 Score = 141 bits (356), Expect = 2e-32, Method: Composition-based stats. Identities = 49/222 (22%), Positives = 78/222 (35%), Gaps = 22/222 (9%) Query: 13 RVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD------QRHHMLF 66 R LLP +P L + P L EV A+L MPD R + Sbjct: 88 RQKLLPASPA-------KLVKSPKLPKTLPKVLPVEEVFAILD-MPDVKTVLGLRDRAIL 139 Query: 67 ATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYV 126 L+ G+RI E L D+D VR++ + + R +R + +Y+ Sbjct: 140 ELLYGGGLRISELCGLDL--LDIDRSGRIVRVMGKGSKERLVPVNAQSIRAL----EAYL 193 Query: 127 RQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRA--EADGVHFSIPVTPHTFRHSYI 184 + + T R + + R + R + V+PH RHS+ Sbjct: 194 ARRGELLATIRKDQAPEAMFLNFRGGRLTPRSIARHLDTYVLKCALTRKVSPHAMRHSFA 253 Query: 185 MHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAV 226 H+L + IQ L GH + + YT+V + Sbjct: 254 THLLGGGADIRSIQELLGHSSLSTTQRYTQVTWEQLQQVYDS 295 >UniRef50_B9YZP4 Tyrosine recombinase XerC n=3 Tax=Proteobacteria RepID=B9YZP4_9NEIS Length = 323 Score = 141 bits (355), Expect = 2e-32, Method: Composition-based stats. Identities = 46/205 (22%), Positives = 73/205 (35%), Gaps = 21/205 (10%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPD------QRHHMLFATLWNTGMRIGEARMLTPES 86 R S P L SALL D R +F L++ G+R+ E L Sbjct: 117 RPPKSPKTLPKALPVDATSALLDAPIDPEDDLALRDQAMFELLYSCGLRLSELTGLDLAD 176 Query: 87 FDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWA 146 DL E + G+ K R++P+ + + +E W+ + E Sbjct: 177 LDL----------GEGLLTAHGKGNK--TRILPIGRQAR-QALERWLAIRPSQPGEGAVF 223 Query: 147 VTDETMRNWLKQAVRRAE--ADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHR 204 R +Q +R E A V PH RHS+ H+L + +Q L GH Sbjct: 224 TGKSGRRLSGRQVEKRLEQWAQRHGSDRHVHPHMLRHSFASHLLQSSGDLRAVQELLGHA 283 Query: 205 DPRSMEVYTRVFALDMAATLAVPFT 229 + + ++YT + +A Sbjct: 284 NLSTTQIYTSLDFQHLAKVYDATHP 308 >UniRef50_A6DT72 Phage integrase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DT72_9BACT Length = 328 Score = 140 bits (354), Expect = 3e-32, Method: Composition-based stats. Identities = 46/186 (24%), Positives = 76/186 (40%), Gaps = 17/186 (9%) Query: 39 GATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRI 98 P+ L E++ +L Y+ RH + +++ G+R+ EA + P + + Sbjct: 99 HKLPSVLTQKEIAHVLSYVKRWRHRVCLTAIYSMGLRVSEALKMRPSD---------ICV 149 Query: 99 LSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR------RREPLWAVTDETM 152 + + R + +D RLVPL D+S + W+ P R + D+ M Sbjct: 150 ERKILHIRNSKGCRD--RLVPLPDLSLQMINDFWLSHRSPNYIFPQIRDKSNMVNIDKHM 207 Query: 153 RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVY 212 Q R V+ H RHSY HM+ P IQ + GHRD ++ +Y Sbjct: 208 YIGAVQGAFRMAVLESGIMKRVSVHNLRHSYATHMMEKGVPIMAIQEILGHRDIKTTMIY 267 Query: 213 TRVFAL 218 R+ L Sbjct: 268 ARLTEL 273 >UniRef50_D1B6D4 Integrase family protein n=3 Tax=Synergistaceae RepID=D1B6D4_THEAS Length = 292 Score = 140 bits (354), Expect = 3e-32, Method: Composition-based stats. Identities = 51/214 (23%), Positives = 83/214 (38%), Gaps = 32/214 (14%) Query: 35 ATSTGATPAYLLAPEVSALLFYMPDQR----HHMLFATLWNTGMRIGEARMLTPESFDLD 90 S+ P + P+V LL P R ++ L+ +G+R+ E L + D++ Sbjct: 97 PRSSPGLPRAISYPDVCRLLEEGPSGREAFRDRLVMELLYGSGLRVSELCDLDWDDVDVE 156 Query: 91 GVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWA---- 146 ++R++ G+ K R+VP I + W R PL+ Sbjct: 157 ER--WIRVM--------GKGSKG--RMVPFGSI-VQDMLRRWGEMV--GRAGPLFPGKRG 201 Query: 147 ---VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 +T T+ + RR G V+PHT RHS+ H+L +V+Q L GH Sbjct: 202 AERLTQRTVHRIVSGCARRVGLFG------VSPHTLRHSFATHLLEGGASLRVVQELMGH 255 Query: 204 RDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAE 237 + + Y V A M + V G D + Sbjct: 256 ESLVTTQRYLDVTAERMRFSYQVHHPRAGGDKSH 289 >UniRef50_B5Y8G2 Tyrosine recombinase XerC n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y8G2_COPPD Length = 286 Score = 140 bits (353), Expect = 3e-32, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 72/191 (37%), Gaps = 21/191 (10%) Query: 40 ATPAYLLAPEVSALLFYMPD----QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 P +L ++S LL + R L L TG RI EA L E D Sbjct: 100 KVPRVVLRDDISKLLELPENTPIELRDKALVWFLLGTGTRISEALSLKVEDIDFRTASCQ 159 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDISYV-RQMESWMITTRPR-RREPLWAVTDETMR 153 V G+ K +P + + R +E + +T P +TD R Sbjct: 160 V----------LGKGNKKRTVYIPSKALKLLKRYIEVFNLTEGPLFLNMQGQGLTDRGAR 209 Query: 154 NWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYT 213 L + ++ + V PHT RH++ ++L + IQ L GH RS ++YT Sbjct: 210 YILHKISKKYGLRDL-----VHPHTLRHTFATNLLEEGANLREIQELLGHSSLRSTQIYT 264 Query: 214 RVFALDMAATL 224 V + + + Sbjct: 265 HVSPVMVKEAI 275 >UniRef50_Q1VZY8 Tyrosine type site-specific recombinase n=5 Tax=Psychroflexus torquis ATCC 700755 RepID=Q1VZY8_9FLAO Length = 379 Score = 140 bits (353), Expect = 3e-32, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 78/186 (41%), Gaps = 13/186 (6%) Query: 34 MATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVR 93 + P L EV ++ + +H + T++ G+R+GE L D+ Sbjct: 183 RPKKSQDLPNILHINEVRRIINSPSNLKHKTILHTIYGAGLRVGELIRLRV--VDIRSEE 240 Query: 94 PFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMR 153 ++ I K + R + L L + + + W+ + + + +++ Sbjct: 241 GYIFIKDSKGKKDRHTVLSKHL-LELLREYYKIYKPAYWLFEGQTGGQ-----YSSTSIQ 294 Query: 154 NWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYT 213 + ++AV+ + TPHT RHS+ H++ + IQA GH ++ E+YT Sbjct: 295 SIYRKAVKETNGNPWS-----TPHTLRHSFATHLMERGTSLRHIQAALGHNSSKTTEIYT 349 Query: 214 RVFALD 219 RV A++ Sbjct: 350 RVLAIN 355 >UniRef50_C8P0J8 Tyrosine recombinase XerC n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P0J8_ERYRH Length = 296 Score = 140 bits (353), Expect = 4e-32, Method: Composition-based stats. Identities = 38/201 (18%), Positives = 76/201 (37%), Gaps = 33/201 (16%) Query: 39 GATPAYLLAPEVSALLFYMPDQ----RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRP 94 P +L+ E+ LL + R+ ++ ++ G+R+ E L DL Sbjct: 104 RHLPHFLMYDEIETLLLSCDESVLGVRNQVMIELMYACGLRVSEVVDLQIHDLDL----- 158 Query: 95 FVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR-----------RREP 143 +E+ G+ K+ S V ++ S++ RP+ + Sbjct: 159 -----TERSLRVIGKGNKERQLFFY---ESLVPKLWSYLNLYRPQFPNVSDTEAVFLNQR 210 Query: 144 LWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 +T +++ L+ + A + + PH RHS+ H+L + +V+Q L GH Sbjct: 211 GKPLTPRGIQHILEHQGKTA-----GLRMKLHPHMLRHSFATHLLDNGASLRVVQTLLGH 265 Query: 204 RDPRSMEVYTRVFALDMAATL 224 + ++YT V + Sbjct: 266 ESLSTTQIYTHVSMQKIKEVY 286 >UniRef50_B3E1H7 Tyrosine recombinase xerC n=8 Tax=Desulfuromonadales RepID=XERC_GEOLS Length = 317 Score = 140 bits (352), Expect = 4e-32, Method: Composition-based stats. Identities = 42/192 (21%), Positives = 74/192 (38%), Gaps = 25/192 (13%) Query: 35 ATSTGATPAYLLAPEVSALLFYMPDQ--------RHHMLFATLWNTGMRIGEARMLTPES 86 P +L + L+ R + L+++G+R+ E L Sbjct: 113 PKREQRLPFHLNIDQTVTLIEAPGHTGQEQPTFARDTAILELLYSSGLRVSELTGLAVA- 171 Query: 87 FDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWA 146 DLD VR+ +G+ K+ R+VP+ + + +E ++ + Sbjct: 172 -DLDRAAGMVRV--------QGKGGKE--RIVPVGSAA-LEALEQYLAGRGQLADDAPLF 219 Query: 147 VTDETMR---NWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 + R + Q V+R A G+ ++PHT RH++ HML + IQ L GH Sbjct: 220 LGCRGARINRRTVAQLVKR-WASGIPAFRSISPHTLRHTFATHMLEGGADLRSIQELLGH 278 Query: 204 RDPRSMEVYTRV 215 + + YT V Sbjct: 279 SSLSTTQKYTHV 290 >UniRef50_B8FRH1 Integrase family protein n=3 Tax=Clostridiales RepID=B8FRH1_DESHD Length = 298 Score = 140 bits (352), Expect = 4e-32, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 70/191 (36%), Gaps = 18/191 (9%) Query: 39 GATPAYLLAPEVSALL-----FYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVR 93 P +L E+ L+ + R ++ L+ +G+R+ E L + D Sbjct: 111 RKLPHFLSLEELDRLIRTPDCATLLGARDQVILELLYGSGLRVSELADLNRQDID----- 165 Query: 94 PFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMR 153 + RG+ K+ R+VPLT+ + + ++ ++ L + Sbjct: 166 -----AGSSLLRVRGKGNKE--RIVPLTNYA-LEAARQYLEMREDKQEALLLNYQGTRLS 217 Query: 154 NWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYT 213 + + A S + PH RHS+ H+L + +Q L GH S ++YT Sbjct: 218 VRSIRRILDGLALEAGLSQHLHPHMLRHSFATHLLDGGADLRSVQELLGHAKLSSTQIYT 277 Query: 214 RVFALDMAATL 224 + + Sbjct: 278 HLTKERLREVY 288 >UniRef50_UPI0001973487 tyrosine recombinase XerD n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973487 Length = 287 Score = 140 bits (352), Expect = 5e-32, Method: Composition-based stats. Identities = 36/198 (18%), Positives = 74/198 (37%), Gaps = 25/198 (12%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYM-----PDQRHHMLFATLWNTGMRIGEAR 80 + R P+ L EV+ LL + R + L+ TG+R+ E Sbjct: 92 RNPAEMIRAPKIEKKAPSILSVEEVTRLLNQPGGRTPKEIRDKAMLELLYATGIRVSELM 151 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP-- 138 L ++ F+ R +P ++ + ++ ++ +RP Sbjct: 152 NLNLHHINM--TIGFITCSDSG-----------RERTIPFGRVAK-KALDDYLKNSRPEL 197 Query: 139 -RRREPLWAVTDETMRNWLKQA---VRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPR 194 +++E W + + +Q + + + +TPHT RHS+ H++ Sbjct: 198 TKKKESDWLFVNCSGGQMSRQGFWKIIKYYGEKAGIQTDITPHTLRHSFAAHLISSGADM 257 Query: 195 KVIQALAGHRDPRSMEVY 212 K +Q + GH D + ++Y Sbjct: 258 KAVQQILGHSDMATTQMY 275 >UniRef50_B0MY63 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MY63_9BACT Length = 298 Score = 140 bits (352), Expect = 5e-32, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 83/218 (38%), Gaps = 31/218 (14%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYM-----PDQRHHMLFATLWNTGMRIGEAR 80 +T P L E+ ++ + +R + L++ G+R+ E Sbjct: 99 STPTQFIDTPKFGRHLPDILTVEEIDRIVAAVDTSTVKGRRDSAMLEVLYSCGLRVSELT 158 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWM--ITTRP 138 L ++R+ + D+ RLVP++ + +++ ++ T+ Sbjct: 159 SLRLGDLFF--GEGYIRVTGKG----------DKQRLVPVSGAAR-EKIQRYLDDRATKT 205 Query: 139 RRREPLWAVTDET------MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQ 192 + ++ T + L++AV RA D ++PHTFRHS+ H+L Sbjct: 206 SASDVVFLNNRGTQLTRVMVFTILREAVHRAGID-----KHISPHTFRHSFATHLLEGGA 260 Query: 193 PRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 + +Q + GH + E+YT + + T+ Sbjct: 261 SIRQVQEMLGHESILTTEIYTHLEGDHLRDTVEKYLPL 298 >UniRef50_D1CD80 Integrase family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CD80_THET1 Length = 310 Score = 139 bits (351), Expect = 6e-32, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 76/197 (38%), Gaps = 37/197 (18%) Query: 38 TGATPAYLLAPEVSALLFYMPDQ------RHHMLFATLWNTGMRIGEARMLTPESFDLDG 91 P + EV+ LL D R + L+ TG+R+ E L + +LD Sbjct: 111 QKYWPKAISVQEVNMLLAAASDSETPEGIRDRAMLEVLYRTGLRVSELVSLNVDDINLDE 170 Query: 92 VRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP-----RRREPLW- 145 S RG+ K VPL+ + V ++ ++ +RP + + L+ Sbjct: 171 --------SHLKCIGRGKTRK-----VPLSQPA-VDVLKLYLERSRPLLVRGQDEQALFV 216 Query: 146 -----AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQAL 200 +T + LK A G +TPHT RHS+ HM+ + +Q Sbjct: 217 NHRGQRLTRQGFWLILKAYASEAGIKG------ITPHTLRHSFAAHMIDGGIDLRQVQEW 270 Query: 201 AGHRDPRSMEVYTRVFA 217 GH + +VY ++ + Sbjct: 271 LGHASITTTQVYRQIKS 287 >UniRef50_Q60AJ2 Integrase/recombinase XerC n=1 Tax=Methylococcus capsulatus RepID=Q60AJ2_METCA Length = 304 Score = 139 bits (351), Expect = 6e-32, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 83/220 (37%), Gaps = 21/220 (9%) Query: 23 VDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQR----HHMLFATLWNTGMRIGE 78 +D A ++R S P L V+ LL D R ++ +++G+R+ E Sbjct: 93 LDVNPARAVRP-PRSGRRLPRLLDVDAVAGLLDAPADDRLETRDRAMWELFYSSGLRLSE 151 Query: 79 ARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR- 137 L D FV R+G+ K R VP+ + + + +W+ R Sbjct: 152 LVGLDVVDVDFGAGSVFV---------RKGKGGK--ARYVPVGAKA-LEAIGAWLEARRV 199 Query: 138 -PRRREPLWAVTDETMRNWLKQAVRRAEA--DGVHFSIPVTPHTFRHSYIMHMLYHRQPR 194 +P ++ + R + R E + S V PH RHS+ HML Sbjct: 200 LTGAGQPALFLSRQGRRIAPRTVEMRLERWRAKLGLSERVHPHMLRHSFASHMLEASGDL 259 Query: 195 KVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 + +Q L GH + ++YT V +AA RD Sbjct: 260 RAVQELLGHATLATTQIYTHVDFQRLAAVYDQSHPRARRD 299 >UniRef50_A8VRZ0 Putative helix-turn-helix protein, YlxM/p13 family protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VRZ0_9BACI Length = 303 Score = 139 bits (351), Expect = 6e-32, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 80/198 (40%), Gaps = 34/198 (17%) Query: 35 ATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESFDL 89 P++L E+ A+ + R+ + L+ +G+R E L + DL Sbjct: 107 PKLDKKLPSFLYENEMQAIFDAIDTDSLLGARNLAIIELLYASGIRASECTGLKLKDIDL 166 Query: 90 DGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR-----RREPL 144 D V G+ K+ R +P+ + V + ++ + + +PL Sbjct: 167 DLSTLLV----------MGKGKKE--RFLPVGSFA-VEALSLYLDKRTAKFGPHAQSDPL 213 Query: 145 W------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQ 198 + A+TD +R L + + A + +TPH RH++ HML + +Q Sbjct: 214 FINYRGGALTDRGLRKILAKVIEDA-----SLTSKLTPHVIRHTFATHMLNEGADLRTVQ 268 Query: 199 ALAGHRDPRSMEVYTRVF 216 L GH D ++ ++YT V Sbjct: 269 ELLGHTDLKATQIYTHVT 286 >UniRef50_Q30SH3 Integron integrase n=2 Tax=Bacteria RepID=Q30SH3_SULDN Length = 320 Score = 139 bits (351), Expect = 6e-32, Method: Composition-based stats. Identities = 52/229 (22%), Positives = 83/229 (36%), Gaps = 40/229 (17%) Query: 34 MATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVR 93 A P L EV ++ M + ++ ++ G+R+ E + + + D + Sbjct: 96 RAQQRKHIPVVLTKDEVQNIILNMNGI-YQLMVKLMYGCGLRMSEVQNIRIKDIDFGFDK 154 Query: 94 PFV---------------------RILSEKVRARRGRPPKDEVRLVPLTDI--------S 124 +V +I EKVR + KD V + Sbjct: 155 IYVWDGKSLKDRTLPLPMKIKDELKIQVEKVRELHQKDLKDGYGSVYIPYAFERKFPKAK 214 Query: 125 YVRQMESWM----ITTRPRRREPL-WAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTF 179 + + + I T PR E + D T+ +KQAV ++ D VT H F Sbjct: 215 FETKWQYIFPMNTIATDPRSGERRRHHILDATLSRNIKQAVTKSNID-----KRVTSHIF 269 Query: 180 RHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPF 228 RHSY H+L + IQ L GH+ + +YT V + A L P Sbjct: 270 RHSYATHLLQAGIDLRSIQELLGHKSVETTMIYTHVVSEMNKAKLISPL 318 >UniRef50_C0W1H5 Possible integrase/recombinase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W1H5_9ACTO Length = 317 Score = 139 bits (351), Expect = 6e-32, Method: Composition-based stats. Identities = 49/215 (22%), Positives = 85/215 (39%), Gaps = 37/215 (17%) Query: 39 GATPAYLLAPEVSALLFYMP------DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGV 92 P + E++A+L R L L+ TG RI E L+P+ L G Sbjct: 118 KHLPKAISLEEIAAMLEVAGQRPGPVGLRDVALIELLYGTGARITEVMNLSPDDLYLAGE 177 Query: 93 RPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR---------REP 143 P V++ G+ K+ RLVPL + V+ +E +++ RP P Sbjct: 178 FPHVKLF--------GKGRKE--RLVPLGSFA-VQALEDYLLLGRPLLLGKAKTRVAGHP 226 Query: 144 LW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVI 197 L+ +++ ++ + Q A V+PH+ RHS+ H+L + + Sbjct: 227 LFLNKRGLSLSRQSAWEIISQTAVAA-----GCVSEVSPHSLRHSFATHLLEGGASIRDV 281 Query: 198 QALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDG 232 Q L GH + ++YT+V + A+ Sbjct: 282 QELLGHASVTTTQIYTKVSMNTLREVHALTHPRAN 316 >UniRef50_B8FPN6 Tyrosine recombinase XerD n=2 Tax=Desulfitobacterium hafniense RepID=B8FPN6_DESHD Length = 322 Score = 139 bits (350), Expect = 8e-32, Method: Composition-based stats. Identities = 38/168 (22%), Positives = 75/168 (44%), Gaps = 23/168 (13%) Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R+ + L+ G+R+ E L I + RG+ K+ R+VP+ Sbjct: 158 RNMAMIEVLYGCGLRVSELVGLKVSDI----------IFETRTLRCRGKGNKE--RIVPI 205 Query: 121 TDISYVRQMESWMITTRPRRR-----EPLWAVTDETM--RNWLKQAVRR-AEADGVHFSI 172 + + + +++++ R R R E L+ + T R + +++ A+ GV + Sbjct: 206 GEYA-LEVLQNYLEHDRERLRGKHKTEVLFLNSRGTALTRQGIWDILKKWAQTHGVQEN- 263 Query: 173 PVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDM 220 + PH FRHS+ H+L H + +Q + GH D + ++YT + + Sbjct: 264 -IYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYTHLSRQRL 310 >UniRef50_D0LHX4 Integrase family protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LHX4_HALO1 Length = 395 Score = 139 bits (350), Expect = 8e-32, Method: Composition-based stats. Identities = 44/174 (25%), Positives = 72/174 (41%), Gaps = 19/174 (10%) Query: 60 QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVP 119 R + L+ +G+R+GE L + D R+ S VR RRG+ K+ R+VP Sbjct: 189 LRDRAIAEVLYGSGLRVGECCALDLDDID------RARLSSALVRVRRGKGGKE--RIVP 240 Query: 120 LTDISYVRQMESWMITTRPRRREP--------LWAVTDETMRNWLKQAVRRAEADGVHFS 171 L + V +++++ RP R+P ++ R + R + Sbjct: 241 LGRQA-VAALDAYL-NVRPLLRDPKTGARDPAALFLSYRGTRLTTRSVQRMIGRNAQEVG 298 Query: 172 I-PVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATL 224 TPH RHS+ H+L + IQ L GH S ++YT+V + Sbjct: 299 AYEATPHALRHSFATHLLDSGVDLRAIQELLGHASLASTQIYTKVSLDHLMNVY 352 >UniRef50_C8NZN0 Integrase/recombinase XerD n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8NZN0_ERYRH Length = 304 Score = 139 bits (350), Expect = 8e-32, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 84/222 (37%), Gaps = 25/222 (11%) Query: 24 DFATALSLRRMATSTGATPAYLLAPEVSALLFYM----PDQRHHMLFATLWNTGMRIGEA 79 D +SL+ T P + + L + D + + L+ G+R+ E Sbjct: 92 DPTAFVSLKNKGTR---LPTIVSDDTIRKLFSFDRVTGKDFMDYAILLLLYRCGLRVSEC 148 Query: 80 RMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR 139 L LD + ++RIL G+ K+ R++PL I + + ++ RP+ Sbjct: 149 VHLEFSQVYLD--QKWLRIL--------GKGNKE--RMIPL-SIDAIDGLSEYINIIRPQ 195 Query: 140 -----RREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPR 194 + + + ++ ++ + P++ HT RHS+ +L Sbjct: 196 WMIQPTEQIFINAKGKGISRQYIDSMIKSRCKEMGILTPISAHTLRHSFATAILDTGVDL 255 Query: 195 KVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAA 236 ++IQ L GH+D + ++YT V + G + Sbjct: 256 RIIQELLGHQDISTTQIYTHVNKKTLKREYDQFLKGGFSNQG 297 >UniRef50_D2Q591 Integrase/recombinase (XerD/RipX family) n=10 Tax=Bifidobacterium RepID=D2Q591_9BIFI Length = 318 Score = 139 bits (350), Expect = 9e-32, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 78/227 (34%), Gaps = 53/227 (23%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMP--------------------DQRHHMLFATLWNT 72 + P L EV L+ +P R L ++ T Sbjct: 102 KAPKGASTLPDVLSVDEVMRLMDSIPLSRHHDGKQGHGDAAADDPVMLRDKALLEFMYAT 161 Query: 73 GMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESW 132 G R+ EA GV L +KV G+ K RLVP+ + + + Sbjct: 162 GSRVSEAC----------GVDLDDIDLDDKVARLMGKGSKQ--RLVPVGSFA-CEALRRY 208 Query: 133 MITTRPRRREPLW---------------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPH 177 + RP + ++ +++ ++ A RA H + P+ PH Sbjct: 209 LRFGRPVLQSKSKGAAEHRAVFLNKRGKRLSRQSVWEIIRTAGERA-----HITKPLHPH 263 Query: 178 TFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATL 224 T RHS+ H++ + +Q L GH + ++YT V ++ Sbjct: 264 TLRHSFATHLIQGGADVRTVQELLGHASVTTTQIYTHVSPENLIEAY 310 >UniRef50_B9XMB7 Integrase family protein n=1 Tax=bacterium Ellin514 RepID=B9XMB7_9BACT Length = 306 Score = 139 bits (350), Expect = 9e-32, Method: Composition-based stats. Identities = 50/220 (22%), Positives = 89/220 (40%), Gaps = 37/220 (16%) Query: 22 GVDFATALSLRRMATSTGATPAYLLAPEVSALL-----FYMPDQRHHMLFATLWNTGMRI 76 ++ A +LSL R P L E++ LL + + +G+R+ Sbjct: 102 PLNIAESLSLPRR---WKRLPKALSDLEITQLLTLEIPETPRTLGDQAVLELAYASGLRL 158 Query: 77 GEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITT 136 E R + E L+ F+ ++ G+ K+ R+VP+ + V+ ++ ++ + Sbjct: 159 AELRNIRMEQLHLE--VGFINVI--------GKGNKE--RVVPVGSKA-VQALQRYLESG 205 Query: 137 RPRRREPLWAVT-----------DETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIM 185 RP+ P T+ +K V+R+ + VTPH RHS+ Sbjct: 206 RPKLVTPRSPANVFLTMRGTPFAAVTLWKRIKDRVKRS-----GVARNVTPHMLRHSFAT 260 Query: 186 HMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLA 225 H+L H +VIQ L GH + + E+YT V + Sbjct: 261 HLLEHGADLRVIQELLGHANISTTEIYTHVSGSRLREVHR 300 >UniRef50_Q2LT92 Tyrosine recombinase xerC n=1 Tax=Syntrophus aciditrophicus SB RepID=XERC_SYNAS Length = 310 Score = 139 bits (350), Expect = 1e-31, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 77/210 (36%), Gaps = 38/210 (18%) Query: 35 ATSTGATPAYLLAPEVSALL-----FYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDL 89 + PA L E+ LL + R + +++G+R+ E + E D Sbjct: 108 PRTEKYIPAVLSVDEIFVLLNLPFPEDVFGLRDRAILELFYSSGIRVSELTGINEEDMDF 167 Query: 90 DGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRRE------- 142 S+ + RG+ K+ R+VP+ + ++ +M+ Sbjct: 168 ----------SQGLIRIRGKGKKE--RIVPIGQPA-SEAVQRYMMKKPGSETSGKAVATC 214 Query: 143 --PLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPR 194 PL+ ++ ++ L + V + ++PHT RHS+ H++ Sbjct: 215 PVPLFVNRRQGRLSARSVARILSKYVSMS-----GLQKQISPHTLRHSFATHLMDAGADL 269 Query: 195 KVIQALAGHRDPRSMEVYTRVFALDMAATL 224 + IQ L GH + + YT V + A Sbjct: 270 RSIQELLGHESLSTTQKYTAVSVNRLMAVY 299 >UniRef50_A0LEB8 Tyrosine recombinase xerC n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=XERC_SYNFM Length = 328 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 48/251 (19%), Positives = 87/251 (34%), Gaps = 39/251 (15%) Query: 1 MNNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ 60 + + N E V P A ++ ++ T P++L +V LL + Sbjct: 96 LRSFYHFLNDRELVRENPAAL-------VAYPKLGT---KIPSFLGVDDVFHLLDSLNAG 145 Query: 61 -----------RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGR 109 R+ LF +++TG+R+ E + D VR+L G+ Sbjct: 146 AARAGASWRRCRNWALFECMYSTGVRVSELAGMDESDVDFH--EGMVRVL--------GK 195 Query: 110 PPKDEVRLVPLTDIS------YVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRA 163 K+ R+VP+ + Y+R ++S R + + R Sbjct: 196 GSKE--RIVPVGGKALDAVKLYLRVLDSQFPEARRMGSALFRNARGRRLTTRSVHRLLRM 253 Query: 164 EADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAAT 223 E ++PH RH++ H+L + IQ + GH + + + YT V + Sbjct: 254 ELRRCGLWQHLSPHGLRHTFATHLLNSGADLRAIQEMLGHSNLSTTQRYTHVHVDQLMKV 313 Query: 224 LAVPFTGDGRD 234 RD Sbjct: 314 YDAAHPRSRRD 324 >UniRef50_A5G656 Phage integrase family protein n=1 Tax=Geobacter uraniireducens Rf4 RepID=A5G656_GEOUR Length = 290 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 53/213 (24%), Positives = 78/213 (36%), Gaps = 30/213 (14%) Query: 35 ATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRP 94 A + PA L E++ +L + + T+++ G+R+ E L D D + Sbjct: 94 AERSKKLPAVLSQEEIARILSCVRTPHNRAYLFTVYSCGLRLQEGLHLEVGDIDSDRMLI 153 Query: 95 FVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDE---- 150 V RG+ KD R+VPL + E W PR P D+ Sbjct: 154 HVH---------RGKGAKD--RMVPLPPPTLAVLREHWKSHKNPRPIFPALGCGDKQGAT 202 Query: 151 --------TMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAG 202 T+ +K AVR+A V HT RH Y H+L +VIQ G Sbjct: 203 AESPLAITTVVGAMKDAVRQAGITK----RSVHIHTLRH-YATHLLEEGVNLRVIQRYLG 257 Query: 203 HRDPRSMEVYTRVF--ALDMAATLAVPFTGDGR 233 H + VY + D A + G+ R Sbjct: 258 HSSIETTMVYLHLTRKGHDDAVQIINRLMGEIR 290 >UniRef50_Q0F1F3 Tyrosine recombinase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F1F3_9PROT Length = 298 Score = 138 bits (348), Expect = 1e-31, Method: Composition-based stats. Identities = 47/207 (22%), Positives = 72/207 (34%), Gaps = 16/207 (7%) Query: 33 RMATSTGATPAYLLAPEVSALL---FYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDL 89 R + P L + +AL+ D+R L A ++ G+R+ EA L DL Sbjct: 101 RPPKKSARLPRTLPPEQTAALMQPTHASADRRDLALLAVMYGAGLRVSEAVGLDLHDIDL 160 Query: 90 DGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQM--ESWMITTRPRRREPLWAV 147 V G+ K + +P T + Q E + R R L Sbjct: 161 HSCELRV----------LGKGSKQRIVPLPTTAADLLGQWLDERLLGLVRDERAVFLNRF 210 Query: 148 TDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPR 207 +++ ++ A I VTPH RHS+ H+L + IQ L GH Sbjct: 211 GQRLTARSVQRMLK-TRALESGADISVTPHRLRHSFATHLLAGGVDLRAIQELLGHASLA 269 Query: 208 SMEVYTRVFALDMAATLAVPFTGDGRD 234 + E YT + + GR Sbjct: 270 TTERYTHLDIAKLTEVYDRSHPRAGRR 296 >UniRef50_A6CC23 Integrase/recombinase n=2 Tax=Planctomyces RepID=A6CC23_9PLAN Length = 316 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 77/199 (38%), Gaps = 25/199 (12%) Query: 39 GATPAYLLAPEVSALLFYM-----PDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVR 93 P L +V+ LL R + A ++ TG R+ E L S L Sbjct: 125 KYLPKVLSPEKVNQLLAAPCRQDRYPLRDRAILAMMYATGCRVTEIVTLPLNSVKL---- 180 Query: 94 PFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP-------RRREPLWA 146 +E G+ K+ R+V L ++ V +E+++ RP + Sbjct: 181 ------TEGYARCVGKGNKE--RMVSLNPVA-VAAVEAYLRHERPVLTRRNTTEQALFLN 231 Query: 147 VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDP 206 + + + + + A V S V+PHT RHS+ HM+ + +Q L GH + Sbjct: 232 RGGKQLSRVMVWNIVKKNAARVGCSKEVSPHTLRHSFATHMMAGGAEIRALQELLGHANI 291 Query: 207 RSMEVYTRVFALDMAATLA 225 R+ ++YT V + A Sbjct: 292 RTTQIYTHVDHSRLKAVHQ 310 >UniRef50_Q87DN0 Tyrosine recombinase xerD n=57 Tax=Proteobacteria RepID=XERD_XYLFT Length = 324 Score = 138 bits (348), Expect = 2e-31, Method: Composition-based stats. Identities = 42/210 (20%), Positives = 74/210 (35%), Gaps = 40/210 (19%) Query: 39 GATPAYLLAPEVSALLFYM-----PDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVR 93 P L ++ ALL R+ + ++ G+R+ E L + Sbjct: 126 HPLPKALTESQIEALLAAPSIETPEGLRNRAMLELMYAAGLRVSELVTLPVAMLNQR--- 182 Query: 94 PFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP------------RRR 141 + V G+ K+ RLVPL + S ++ ++ RP Sbjct: 183 -------QGVLRITGKGGKE--RLVPLGEES-QHWLQRYLEQARPSLAADKPIPADSDGD 232 Query: 142 EPLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRK 195 PL+ ++ + W+K V+PH RHS+ H+L H + Sbjct: 233 VPLFINTNLKRLSRQQFWRWIKHYAALVGIA----PNKVSPHVLRHSFATHLLNHGADLR 288 Query: 196 VIQALAGHRDPRSMEVYTRVFALDMAATLA 225 +Q L GHR + ++YT + + A Sbjct: 289 ALQMLLGHRSISTTQIYTLIARQHLQQLHA 318 >UniRef50_Q97HE5 Tyrosine recombinase xerD n=18 Tax=Clostridium RepID=XERD_CLOAB Length = 292 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 74/194 (38%), Gaps = 32/194 (16%) Query: 33 RMATSTGATPAYLLAPEVSALL-----FYMPDQRHHMLFATLWNTGMRIGEARMLTPESF 87 M P L EV LL R + ++ TGM++ E LT Sbjct: 97 EMPKIRRNFPDILTIEEVEKLLMGPDGNTDKGIRDKAMLEIMYATGMKVTELLNLTIYDI 156 Query: 88 DLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWM---ITTRPRRREPL 144 +L K+ + R K++ R++P+ + V+ +E ++ + + L Sbjct: 157 NL------------KLSYIKCRGIKNKERIIPMGSYA-VKCLEIYLKVRTKLNVQNIDYL 203 Query: 145 WA------VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQ 198 + +T + +KQ A + +T RHS+ +H+L + K IQ Sbjct: 204 FFNLQGDKMTRQGFWKIIKQY-----AQESGIKKKINAYTLRHSFAVHLLQNGADIKTIQ 258 Query: 199 ALAGHRDPRSMEVY 212 L GH D + ++Y Sbjct: 259 ELLGHSDMATTQIY 272 >UniRef50_A7NFG3 Tyrosine recombinase xerC n=6 Tax=Chloroflexi (class) RepID=XERC_ROSCS Length = 314 Score = 138 bits (347), Expect = 2e-31, Method: Composition-based stats. Identities = 45/213 (21%), Positives = 71/213 (33%), Gaps = 36/213 (16%) Query: 33 RMATSTGATPAYLLAPEVSALLF------YMPDQRHHMLFATLWNTGMRIGEARMLTPES 86 P L +V LL R + L+ TG+R+ E L Sbjct: 99 DSPKVDRDLPRALTPRQVDELLELPLRSPTPERIRDKAMLELLYATGVRVSELVALNVND 158 Query: 87 FDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMITTRPRR 140 DL+ R VR + + R VR++P+ + Y + + Sbjct: 159 VDLE--RNEVRCIGKNGR----------VRVLPINGSAATALEEYFDISRNQLARGSGSS 206 Query: 141 REPLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPR 194 E L+ +T + LKQ +TPH RHS+ +HML Sbjct: 207 TEALFLNHRGKRLTRQGFWLILKQYAEELGLS------DLTPHVLRHSFAVHMLNAGFDL 260 Query: 195 KVIQALAGHRDPRSMEVYTRVFALDMAATLAVP 227 + +Q L GH + ++YT + A P Sbjct: 261 RAVQELLGHTSISTTQIYTHLNHESSHTPHAHP 293 >UniRef50_Q9A437 Tyrosine recombinase xerD n=11 Tax=Alphaproteobacteria RepID=XERD_CAUCR Length = 305 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 49/230 (21%), Positives = 86/230 (37%), Gaps = 30/230 (13%) Query: 22 GVDFATALSLRRMA--TSTGATPAYLLAPEVSALL------FYMPDQRHHMLFATLWNTG 73 G + T RR+A + P L E+ LL R + ++ +G Sbjct: 88 GEGWRTDDPSRRVAAPKAGRPLPKVLERDEIERLLAAASAKDSAQGLRLACMIELIYASG 147 Query: 74 MRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWM 133 +RI E L + D V +G+ K+ RL PL D + +++++ Sbjct: 148 LRISELLALPLLALARDPAYLIV----------KGKGGKE--RLAPLNDAARA-AVKAYL 194 Query: 134 ITT-----RPRRREP-LWAVTDETMR---NWLKQAVRRAEADGVHFSIPVTPHTFRHSYI 184 + + ++ P L+ T R + Q + A V+PH RH++ Sbjct: 195 VERPAFLPKGQKDSPWLFPSRGATGRLTPRRVGQLLEDAAIAAGIDRQKVSPHVLRHAFA 254 Query: 185 MHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 H+L +VIQ L GH D + ++YT V +A + + Sbjct: 255 THLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHIVQTKHPLGRKK 304 >UniRef50_Q0EWI0 Tyrosine recombinase XerD n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWI0_9PROT Length = 299 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 81/206 (39%), Gaps = 31/206 (15%) Query: 28 ALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARML 82 A L ++ S P + +V LL R + L+ TG+R+ E L Sbjct: 101 ARHLPKLRKS-RPLPKMMSEHDVERLLAAPETEDPVGLRDRCMLELLYATGVRVSELVSL 159 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRRE 142 T ++D +R++ G+ K+ RL+P + + + ++ W++ + Sbjct: 160 TRGQVEMDA--GLLRVI--------GKGDKE--RLIPFGEEA-GQWLQQWLLLRPAKPAS 206 Query: 143 PLWA-------VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRK 195 P +T + +K+ A + +PHT RH++ H+L H + Sbjct: 207 PYLFAGRGGHAMTRQNFWLRIKRYATMAGIMPLP-----SPHTLRHAFATHLLNHGADLR 261 Query: 196 VIQALAGHRDPRSMEVYTRVFALDMA 221 +Q L GH + E+YT V M Sbjct: 262 AVQMLLGHAHVTTTEIYTHVSRARMH 287 >UniRef50_B5JZ18 Phage integrase n=14 Tax=Rhodobacteraceae RepID=B5JZ18_9RHOB Length = 320 Score = 137 bits (346), Expect = 2e-31, Method: Composition-based stats. Identities = 47/194 (24%), Positives = 75/194 (38%), Gaps = 26/194 (13%) Query: 40 ATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRIL 99 P L E+ +L P + ++ + + GMR GE L D D Sbjct: 121 KVPLVLSKKEIKRILAMAPSLKARVMLSLAYGCGMRAGEVVRLKVGDIDSD--------- 171 Query: 100 SEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRRE-----------PLWAVT 148 E +R + + KD + ++P+ +S +R RP ++ P + Sbjct: 172 QEIIRIVQSKGRKDRIVMLPVDILSLLRDW----WKERPTGQDKDVPAPERVLFPSYRGK 227 Query: 149 DETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRS 208 + R + A G+ + PVT HT RHS+ H+L +VIQAL GH + Sbjct: 228 HLSARQISRLFKETAREAGI--TKPVTLHTLRHSFATHLLERGVDIRVIQALLGHSKLTT 285 Query: 209 MEVYTRVFALDMAA 222 Y V +AA Sbjct: 286 TARYASVATGMIAA 299 >UniRef50_A3EW74 Putative phage integrase family protein n=2 Tax=Leptospirillum sp. Group II RepID=A3EW74_9BACT Length = 314 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 48/203 (23%), Positives = 78/203 (38%), Gaps = 24/203 (11%) Query: 33 RMATSTGATPAYLLAPEVSALLFYM-----PDQRHHMLFATLWNTGMRIGEARMLTPESF 87 + P L E+ LL R + AT + +G+R+ E LT + Sbjct: 99 PVPRLPRNLPGVLDEEEILRLLEAPDPKTDEGIRDRAILATFYASGLRVSELAELTLDRL 158 Query: 88 DLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREP---L 144 +L+ + V G+ K+ V D +++ ++ RP L Sbjct: 159 NLNEEQIRV----------TGKGQKER---VAFLDGLSCARLKLYLERVRPSTNTAEKTL 205 Query: 145 WAVTDETM--RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAG 202 + +T R L ++ V+PHT RHS+ H+L H + IQ L G Sbjct: 206 FLTRRQTGFTRQGLWLLIKGYARQ-CGIDRSVSPHTLRHSFATHLLSHGMDIRSIQILLG 264 Query: 203 HRDPRSMEVYTRVFALDMAATLA 225 H D ++ E+YT V +A LA Sbjct: 265 HSDIQTTEIYTHVDIRMLAEDLA 287 >UniRef50_B0SBH2 Tyrosine site-specific recombinase XerC n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SBH2_LEPBA Length = 428 Score = 137 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 40/196 (20%), Positives = 77/196 (39%), Gaps = 18/196 (9%) Query: 36 TSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 S P L A E A+ +P+ +H ML ++ G+R+ E L + DL+ Sbjct: 225 KSDVKLPEVLSAEETRAIFNSLPNIKHKMLLLISYSAGLRVSEVIHLKTKDIDLERNM-- 282 Query: 96 VRILSEKVRARRGRPPKDEVRLVP------LTDISYVRQMESWMITTRPRRREPLWAV-- 147 +R +G+ KD ++ L + +R+ + + + W Sbjct: 283 -------IRITQGKGKKDRYTILANSLVFELQEYLKIREYNLLLKYSYNEVKNIPWLFPG 335 Query: 148 -TDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDP 206 + + + + A + VT H+ RH++ H+L ++IQ L GH Sbjct: 336 AGTKPLHIRTAETIFNQAAAKAKITKKVTFHSLRHAFATHLLELGTDLRMIQTLLGHSSV 395 Query: 207 RSMEVYTRVFALDMAA 222 R+ ++YT+V + Sbjct: 396 RTTQIYTKVARSRLEN 411 >UniRef50_Q0C629 Tyrosine recombinase XerD n=2 Tax=Hyphomonadaceae RepID=Q0C629_HYPNA Length = 309 Score = 137 bits (345), Expect = 3e-31, Method: Composition-based stats. Identities = 46/213 (21%), Positives = 74/213 (34%), Gaps = 21/213 (9%) Query: 38 TGATPAYLLAPEVSALLFYM-PDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV 96 P L EV L+ D+R L L+ G+R E L + ++ Sbjct: 102 EREVPDVLSREEVGRLIEACGNDKRLKCLVELLYGAGLRATELVTLRVGNLPRRKAGQWM 161 Query: 97 RILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITT----------RPRRREPLWA 146 RG+ KD RL PL + + + W+ R ++ ++ Sbjct: 162 ----SADIIIRGKGGKD--RLCPLGRAALI-ALSEWLEVREASLPDNPLMRSKQEGFVFP 214 Query: 147 VTDETM---RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 + R L Q + + S V PH RH+Y H+L +V+Q L GH Sbjct: 215 SRGKEGHLTRRRLGQMLEDLAGEAGLRSERVYPHALRHAYATHLLQGGADLRVVQTLLGH 274 Query: 204 RDPRSMEVYTRVFALDMAATLAVPFTGDGRDAA 236 D + ++YT V ++A L Sbjct: 275 ADIATTQIYTHVLTDELAELLETAHPMATASKG 307 >UniRef50_B3PEI6 Tyrosine recombinase XerC n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PEI6_CELJU Length = 313 Score = 137 bits (345), Expect = 3e-31, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 75/211 (35%), Gaps = 21/211 (9%) Query: 35 ATSTGATPAYLLAPEVSALLFYMPDQ----RHHMLFATLWNTGMRIGEARMLTPESFDLD 90 + P L + + + D R L ++++G+R+ E L D Sbjct: 108 PKTPKKLPKTLDVDQTAQFVAVEGDDFIHKRDRALLELIYSSGLRLAEVTSLNLGDIDW- 166 Query: 91 GVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR--REPLWAVT 148 + + G+ K R +P+ ++ + ++ W+ EP +T Sbjct: 167 ---------GDAMVTVTGKGSK--TRTLPVGSVA-IAALKDWLSQREQYAPASEPALFIT 214 Query: 149 DETMRNWLKQAVRRAEADGV--HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDP 206 R + R + V PV PH RHS+ HML +++Q L GH + Sbjct: 215 QRGKRISHRAVQLRLQQLSVQQGMDNPVHPHMLRHSFASHMLESSGDLRLVQELLGHANI 274 Query: 207 RSMEVYTRVFALDMAATLAVPFTGDGRDAAE 237 + ++YT + +A GR + Sbjct: 275 STTQIYTHLDFQHLAKVYDKAHPRAGRKKSS 305 >UniRef50_C6J3X1 Tyrosine recombinase XerD n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J3X1_9BACL Length = 323 Score = 137 bits (345), Expect = 3e-31, Method: Composition-based stats. Identities = 42/229 (18%), Positives = 80/229 (34%), Gaps = 37/229 (16%) Query: 7 LQNSPERVSLLPIAPGVDFATALSLRR----------MATSTGATPAYLLAPEVSALLFY 56 L +P + + + F L RR M P L E LL Sbjct: 63 LGKAPATIQRVSVTLRAFFRYLLQERRIEQDPFIMLEMPKVEKKPPQTLTVEETERLLEA 122 Query: 57 MP-----DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPP 111 R + L+ TG+R+ E L + +L+ + R Sbjct: 123 PKPDTPLGLRDKAMLELLYATGIRVSELISLNKDDVNLE------------LHFLRCTGE 170 Query: 112 KDEVRLVPLTDISYVRQMESWMITTR-----PRRREPLWAVTDETMR---NWLKQAVRRA 163 + + R++P ++ ++ ++ R R P R + +++ Sbjct: 171 RGKERILPFGGVT-AEWLDLYLREGRSHLILDERENPALFPNRRGGRISRQGFWKLMKKY 229 Query: 164 EADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVY 212 + + +TPHT RHS+ +H+L + +Q L GH D ++++Y Sbjct: 230 GQEA-GITSDITPHTLRHSFAVHLLERGADVRSVQELLGHSDASTIQMY 277 >UniRef50_B1HMD0 Integrase-recombinase protein n=1 Tax=Lysinibacillus sphaericus C3-41 RepID=B1HMD0_LYSSC Length = 277 Score = 137 bits (345), Expect = 4e-31, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 72/199 (36%), Gaps = 27/199 (13%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPD-QRHHMLFATLWNTGMRIGEARMLTPESFDLDG 91 + S P YL +++ L D R + L+ TG+RI E + E D Sbjct: 94 KTPKSEDLLPYYLNKRQLALLQELTKDNLRERAIVEVLYATGVRINELLNIKLEDIKWDT 153 Query: 92 VRPFVRILSEKVRARRGRPPKDEVRLVP------LTDISYVRQMESWMITTRPRRREPLW 145 + ++ R+G+ KD L L + +VR S + + PR + Sbjct: 154 RQIWI---------RKGKGNKDRFVLFSHECALRLKNYLHVRYENSDFLFSSPRGKHISC 204 Query: 146 AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRD 205 + R + K+ VTPHT RH++ H+ IQ L GH + Sbjct: 205 DLVQLFFRKYSKE-----------LGFKVTPHTLRHTFAAHLAEKGMEFIYIQDLLGHAN 253 Query: 206 PRSMEVYTRVFALDMAATL 224 S +YTR+ Sbjct: 254 INSTRIYTRLMNHARKKQY 272 >UniRef50_B8IZE7 Integrase family protein n=5 Tax=Desulfovibrionales RepID=B8IZE7_DESDA Length = 373 Score = 137 bits (344), Expect = 4e-31, Method: Composition-based stats. Identities = 58/238 (24%), Positives = 89/238 (37%), Gaps = 25/238 (10%) Query: 2 NNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQR 61 NV +P + P A VD AL P A E L R Sbjct: 156 ENVAAQVRNPRQEKRHPRALNVDETFALLDSATGPGGKRGPVAGSAEEERIL------CR 209 Query: 62 HHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLT 121 L L+ +G+RI EA L + L S +V G+ ++ RL PL+ Sbjct: 210 DLALAELLYGSGLRISEALSLDVDDVQL----------SSRVLRVMGKGSRE--RLAPLS 257 Query: 122 DISYVRQMESWMITTRPRR---REPLWAVTDETMRNWLKQAVRRAEA--DGVHFSIPVTP 176 D S+ +++W+ RP E V R ++A R E + V+P Sbjct: 258 DTSF-SCLKAWL-EERPLLALPDEAALFVGARGARLNRREAARIVERLCRRAGLTFTVSP 315 Query: 177 HTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 H+ RHS+ H+L + +Q L GH+ + + YT+V + T G+ Sbjct: 316 HSLRHSFATHLLEAGADMRSVQELLGHQRLTTTQRYTQVSLESLMQTYDQAHPRSGKR 373 >UniRef50_A6DTG9 Integrase/recombinase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DTG9_9BACT Length = 318 Score = 137 bits (344), Expect = 4e-31, Method: Composition-based stats. Identities = 37/221 (16%), Positives = 74/221 (33%), Gaps = 35/221 (15%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMP--------------DQRHHMLFATLWN 71 + A + P L ++S LL R + +++ Sbjct: 102 TNPFQDIKAAKKDKSLPLILSREDISTLLSSPAPYWAQKKGKNNDFMASRDAAILEIIYS 161 Query: 72 TGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMES 131 G+RI EA + + +L+ E G+ K R L + + + +E Sbjct: 162 GGLRIQEALDINFDQINLE----------ESTLKIFGKGKKQ--RTAYLGNPAK-QALEQ 208 Query: 132 WMITTR------PRRREPLWAVTDETMRNWLKQAVR--RAEADGVHFSIPVTPHTFRHSY 183 + + +P++ + R + R +A +TPH RHS+ Sbjct: 209 YFACRKNAELNWTSANDPVFINLKDLKRLSARSIQRNLKAYLQSCQLPPDITPHKLRHSF 268 Query: 184 IMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATL 224 H+L + +Q L GH + + ++YT + + Sbjct: 269 ATHLLDAGADLRSVQELLGHENLSTTQIYTHISTDRLLQAY 309 >UniRef50_B2UMQ9 Tyrosine recombinase XerC n=4 Tax=Verrucomicrobia RepID=B2UMQ9_AKKM8 Length = 300 Score = 137 bits (344), Expect = 4e-31, Method: Composition-based stats. Identities = 40/217 (18%), Positives = 79/217 (36%), Gaps = 39/217 (17%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ------------RHHMLFATLWNTGM 74 T +SL R P +L ++ LL R + ++ GM Sbjct: 99 TGVSLPRR---KKTLPVFLTLNQMLELLELPYKTAVPANAPAWLPYRDAAILELFYSCGM 155 Query: 75 RIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMI 134 R+ E L S D + G+ K+ R++P+ + +E+++ Sbjct: 156 RLSELVGLDVGSVDHRF----------RGVKVMGKGRKE--RILPVGTPALA-ALETYVS 202 Query: 135 TTRPRRREPLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHML 188 + PL+ ++ +++ L + V+ + ++PH RH++ H+L Sbjct: 203 MACLPKNSPLFVSRIGTRLSARSVQMMLNKYVKLS-----SIPFTISPHKIRHTFATHIL 257 Query: 189 YHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLA 225 + +Q L GH + ++YT V MA Sbjct: 258 EAGADLRSVQELLGHASLSTTQIYTHVTRARMAEVYR 294 >UniRef50_C4L386 Tyrosine recombinase XerD n=3 Tax=Firmicutes RepID=C4L386_EXISA Length = 295 Score = 137 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 77/219 (35%), Gaps = 33/219 (15%) Query: 22 GVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRI 76 GV + P EV LL +P R + L+ TGMR+ Sbjct: 89 GVTTTDPSLYLESPKAEKQLPDTWSQTEVERLLDSVPTSDPLSLRDRAMLELLYGTGMRV 148 Query: 77 GEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITT 136 E L + + G+ + R++P++ ++ +E ++ Sbjct: 149 SELLGLDLDDLQFE----------LGYLQCEGKG--ERARIIPVSSVAQSF-VERYIQQA 195 Query: 137 R----PRRREPLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMH 186 R R E L+ ++ + +K+ + A +TPH RHS+ H Sbjct: 196 RNGLGGRETEALFLNGRGGRLSRQGFWKMIKRRAKLA-----GIEKEITPHVLRHSFATH 250 Query: 187 MLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLA 225 +L + + IQ + GH D + +VYT V + Sbjct: 251 LLENGADLRAIQQMLGHADLATTQVYTHVNKSRLHDVYR 289 >UniRef50_B0TX96 Phage integrase family protein n=19 Tax=Francisella RepID=B0TX96_FRAP2 Length = 293 Score = 136 bits (343), Expect = 5e-31, Method: Composition-based stats. Identities = 36/209 (17%), Positives = 82/209 (39%), Gaps = 19/209 (9%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMP----DQRHHMLFATLWNTGMRIGEARMLTPESFD 88 + S+ P + E++ LL P + R F L++ G+R+ E + + + Sbjct: 98 KAPKSSKKLPKAVNTDELAYLLDIKPSNNIETRDIACFDLLYSCGIRLSELSSIELKDIN 157 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVT 148 ++ +K G+ K+ R+V + + + W+ T + + Sbjct: 158 IN----------QKSIRVIGKGNKE--RVVYFGSKTLIN-LNRWLNTRDTYSPKCNFLFI 204 Query: 149 DETMRNWLKQAV-RRAEADGVHF-SIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDP 206 + + +++ +R E + + + PH RHS+ H+L + ++ L GH D Sbjct: 205 SQNGEHLTNRSIQKRIEIFAQKYATKHIHPHMLRHSFATHVLDSSKDLLAVKDLLGHADI 264 Query: 207 RSMEVYTRVFALDMAATLAVPFTGDGRDA 235 S ++YT + +A+ + + Sbjct: 265 SSTQIYTHLNFQQLASVFDKAHPRAKKKS 293 >UniRef50_A3ZUD5 Integrase/recombinase n=2 Tax=Planctomycetaceae RepID=A3ZUD5_9PLAN Length = 291 Score = 136 bits (343), Expect = 5e-31, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 74/198 (37%), Gaps = 26/198 (13%) Query: 41 TPAYLLAPEVSALLFYMPD-----QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPF 95 P+ + ++ LL +R L L+ TG R E L + LD Sbjct: 101 IPSVIAPHKIDDLLTAPWSEDPYWRRDRALLEVLYATGCRASEVSGLRMDDVHLD----- 155 Query: 96 VRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR-----REPLWAVTDE 150 E G+ K R+ PL S R +++++ RPR R+ + Sbjct: 156 -----EGYVKCEGKGSKQ--RIAPLAQKS-ARVVKTYLDEERPRLSKKNLRDAAFLFLSR 207 Query: 151 TMRNWLKQAVR---RAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPR 207 + + + A+ + A V+PH+ RHS+ H+L + +Q + GH Sbjct: 208 SGKRLSRIAIWELVKKYAARAGIDPDVSPHSLRHSFATHLLAGGADLRHVQEMMGHASIA 267 Query: 208 SMEVYTRVFALDMAATLA 225 + ++YT V + A Sbjct: 268 TTQIYTHVDQSRLKKVHA 285 >UniRef50_C4L615 Integrase family protein n=2 Tax=Exiguobacterium RepID=C4L615_EXISA Length = 293 Score = 136 bits (343), Expect = 6e-31, Method: Composition-based stats. Identities = 43/206 (20%), Positives = 76/206 (36%), Gaps = 24/206 (11%) Query: 35 ATSTGATPAYLLAPEVSALLFYMPDQ-------RHHMLFATLWNTGMRIGEARMLTPESF 87 + P + + EV LL Q R + L+ TG+R+ E + SF Sbjct: 99 PKKKQSLPTFAVPTEVEQLLEAASRQDDPFLQARDVAIIEVLYGTGIRVAELCGMNLSSF 158 Query: 88 DLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR--REPLW 145 D V FV ++ G+ K+ R VP+ + V+ ++ ++ + E Sbjct: 159 D--EVLSFVHVM--------GKGKKE--RYVPIGQYA-VQALQRYIELRKGVGLPTETAL 205 Query: 146 AVTDETMRNWLKQ--AVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 ++ + R Q V + P+TPH+ RHS+ +L + +Q L GH Sbjct: 206 FLSQKGNRMTTDQIRYVMKRLRKDSGVHKPLTPHSLRHSFATDLLERGADLRAVQELLGH 265 Query: 204 RDPRSMEVYTRVFALDMAATLAVPFT 229 + YT V + + Sbjct: 266 ESLSTTGRYTHVSTERLRSIYQATHP 291 >UniRef50_Q5FDD4 Integrase/recombinase n=7 Tax=canis group RepID=Q5FDD4_EHRRW Length = 318 Score = 136 bits (342), Expect = 7e-31, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 71/202 (35%), Gaps = 26/202 (12%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMP-------DQRHHMLFATLWNTGMRIGE 78 + A+ P L + +L Y D R+ + L+ +G RI E Sbjct: 108 SQAVFYLSRPHLKKTLPKVLAGSHIEIILNYYKQLPQNWVDMRNFAIMMLLYGSGFRISE 167 Query: 79 ARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMES-----WM 133 L + D R F+ G+ K+ R+VP+ + Y + + Sbjct: 168 VVNLKFQDVRED--RLFI----------TGKGNKE--RVVPILSMVYKSLCQYIECCPYY 213 Query: 134 ITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQP 193 + RP + V + + + + + T HTFRHS+ H+ Sbjct: 214 LGARPSNQYIFVGVRGKKLSRTHFANIMQKLRAEMGLPDITTAHTFRHSFATHLFIGGAD 273 Query: 194 RKVIQALAGHRDPRSMEVYTRV 215 + +Q L GH + ++YT + Sbjct: 274 IRSVQELLGHTSLSTTQIYTHL 295 >UniRef50_Q0ACL7 Tyrosine recombinase XerC n=4 Tax=Gammaproteobacteria RepID=Q0ACL7_ALHEH Length = 304 Score = 135 bits (341), Expect = 9e-31, Method: Composition-based stats. Identities = 53/222 (23%), Positives = 81/222 (36%), Gaps = 31/222 (13%) Query: 13 RVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-----QRHHMLFA 67 R L P A RR P L E + LL P+ R L+ Sbjct: 89 REGRLTGNPAEGVAAPRRPRR-------LPGVLSPDEAARLLEGSPEDDPLALRDRALYE 141 Query: 68 TLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVR 127 ++++G+R+ EA L DL +E + G+ K R VP+ + Sbjct: 142 LIYSSGLRLAEAVGLDLGRLDL----------TEGLVEVVGKGAK--TRRVPVGGKAR-E 188 Query: 128 QMESWMITTRP---RRREPLWAVTDETMRNWLKQAVRRAEADG--VHFSIPVTPHTFRHS 182 +++W+ RP EP V+ R + R PV PH RHS Sbjct: 189 ALQAWLA-VRPALAGADEPAVFVSQRGGRLSARSVQARLARLATLSGVGRPVHPHMLRHS 247 Query: 183 YIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATL 224 + H+L + +Q L GH D + +VYT + +A Sbjct: 248 FASHLLESSGDLRAVQELLGHADIATTQVYTHLDFQHLARVY 289 >UniRef50_C8WAJ5 Integrase family protein n=2 Tax=Atopobium RepID=C8WAJ5_ATOPD Length = 305 Score = 135 bits (341), Expect = 9e-31, Method: Composition-based stats. Identities = 52/240 (21%), Positives = 89/240 (37%), Gaps = 47/240 (19%) Query: 12 ERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLF 66 +R L+ P + + + R P + +V+ LL R Sbjct: 90 QREKLIATDPALALSNPRAPRN-------LPHTMTDSDVNRLLESCDVSTAAGLRDRAFL 142 Query: 67 ATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYV 126 L+ TG RI E L E DL G+ K+ R+VPL + S + Sbjct: 143 EFLYATGARISEVATLRLEQVDLQN----------GTVRLFGKGSKE--RIVPLYE-SAI 189 Query: 127 RQMESWMITTRP---------RRREPLW------AVTDETMRNWLKQAVRRAEADGVHFS 171 ++ ++ ++RP R L+ ++ +++R + A D Sbjct: 190 EWLKKYLRSSRPTLLLKDKTGRVHSALFISVRGNNMSADSLRKVFSSYLTAAGLDS---- 245 Query: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTR--VFALDMAATLAVPFT 229 ++PH RH+Y +L +++Q L GH + +VYT V L AA A P + Sbjct: 246 -SLSPHAMRHTYATELLGGGADLRIVQELLGHESLSTTQVYTHLSVDRLKEAAKAAHPRS 304 >UniRef50_Q9PL53 Tyrosine recombinase xerD n=15 Tax=Chlamydiaceae RepID=XERD_CHLMU Length = 301 Score = 135 bits (341), Expect = 9e-31, Method: Composition-based stats. Identities = 42/201 (20%), Positives = 80/201 (39%), Gaps = 32/201 (15%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPDQ---------RHHMLFATLWNTGMRIGEARMLT 83 P+ L EV++LL + R + T + TG+R+ E L Sbjct: 101 EHPKVWKRLPSILSTEEVNSLLNQPLNTLNLDAYIANRDTAILYTFYATGIRVSELCDLC 160 Query: 84 PESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREP 143 D F+R+ G+ K RLVP+ I + ++S++ R R + Sbjct: 161 IGDISDD----FIRVT--------GKGRK--TRLVPI-SIKARQTIDSYLTMFR-ERFQK 204 Query: 144 LWAVTDETMRNWLKQAVRRAEA-------DGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 + + + + R+ + + ++PH+ RH++ H+L ++ ++ Sbjct: 205 KNPSEEHVFLSIRGKKLERSCVWKRITFYAKLVTTKHISPHSLRHAFATHLLNNQADLRI 264 Query: 197 IQALAGHRDPRSMEVYTRVFA 217 IQ + GH S E+YT V + Sbjct: 265 IQEMLGHARISSTEIYTHVAS 285 >UniRef50_C4ZGY6 Tyrosine recombinase xerC n=3 Tax=Clostridiales RepID=XERC_EUBR3 Length = 306 Score = 135 bits (341), Expect = 9e-31, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 66/165 (40%), Gaps = 25/165 (15%) Query: 60 QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVP 119 R + L++TG+RI E L +L + V G+ K+ R++ Sbjct: 140 LRDAAIVELLFSTGIRISELCNLKISDVNL----------IDGVILIYGKGSKE--RILQ 187 Query: 120 LTDISYVRQMESW--------MITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFS 171 + + S + ++ + + + ++D+++R + + + D Sbjct: 188 IGNSSVLNILKEYKNDFYNEIVQCNHFFSSQSGKPLSDQSVRRMINKYASLSSID----- 242 Query: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVF 216 + +TPH FRH++ +L + IQ + GH ++YT V Sbjct: 243 LHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITQIYTHVA 287 >UniRef50_A8SVW3 Putative uncharacterized protein n=1 Tax=Coprococcus eutactus ATCC 27759 RepID=A8SVW3_9FIRM Length = 306 Score = 135 bits (341), Expect = 9e-31, Method: Composition-based stats. Identities = 38/184 (20%), Positives = 68/184 (36%), Gaps = 25/184 (13%) Query: 59 DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLV 118 R + L+ TGMRI E L +L + G+ K+ R + Sbjct: 139 SLRDAAVIELLFATGMRISELCALKVNDINLYDGSILI----------YGKGDKE--RRL 186 Query: 119 PLTDISYVRQMESW--------MITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHF 170 + + S + + + M + ++TD+T+R + + A D Sbjct: 187 QIGNPSVISILNKYEVDFHSEIMNCNHFFANQSGRSLTDQTVRRMINKYTALAAID---- 242 Query: 171 SIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 + +TPH FRH++ +L + IQ + GH E+YT V + LA Sbjct: 243 -LHITPHMFRHTFATSLLEADVDIRYIQEMLGHSSINITEIYTHVALAKQRSILATKHPR 301 Query: 231 DGRD 234 + + Sbjct: 302 NNFN 305 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q47036 Probable site-specific recombinase in afa region... 259 5e-68 UniRef50_D0BKQ9 Tyrosine recombinase XerD n=2 Tax=Firmicutes Rep... 247 2e-64 UniRef50_Q1PZN1 Similar to site-specific tyrosine recombinase n=... 241 1e-62 UniRef50_Q0AZB8 Tyrosine recombinase XerD subunit n=2 Tax=Firmic... 241 2e-62 UniRef50_Q3Z771 Tyrosine recombinase XerD n=5 Tax=Dehalococcoide... 241 2e-62 UniRef50_B8HGE6 Tyrosine recombinase XerD n=37 Tax=Actinobacteri... 239 7e-62 UniRef50_Q71Y59 Tyrosine recombinase xerD n=19 Tax=Firmicutes Re... 238 1e-61 UniRef50_Q2LSM9 Integrase/recombinase n=6 Tax=Bacteria RepID=Q2L... 238 1e-61 UniRef50_Q5HFS5 Tyrosine recombinase xerD n=101 Tax=Firmicutes R... 237 2e-61 UniRef50_A8RBU2 Putative uncharacterized protein n=2 Tax=unclass... 237 2e-61 UniRef50_B5YFC5 Recombinase n=2 Tax=Dictyoglomus RepID=B5YFC5_DICT6 236 5e-61 UniRef50_B3GZ58 Tyrosine recombinase xerC n=39 Tax=Gammaproteoba... 235 8e-61 UniRef50_D2RKG6 Tyrosine recombinase XerD n=1 Tax=Acidaminococcu... 234 2e-60 UniRef50_C0WCK3 Recombinase n=1 Tax=Acidaminococcus sp. D21 RepI... 234 3e-60 UniRef50_A8YV25 Integrase/recombinase n=13 Tax=Lactobacillus Rep... 233 3e-60 UniRef50_D2BHG9 Site-specific recombinase n=5 Tax=Dehalococcoide... 233 4e-60 UniRef50_Q93C64 Tyrosine recombinase xerD n=50 Tax=Bacilli RepID... 233 5e-60 UniRef50_P46352 Tyrosine recombinase xerD n=98 Tax=Bacteria RepI... 232 8e-60 UniRef50_Q3AB72 Tyrosine recombinase XerC n=1 Tax=Carboxydotherm... 231 1e-59 UniRef50_B5YF74 Tyrosine recombinase XerD n=2 Tax=Dictyoglomus R... 231 1e-59 UniRef50_C3RQN8 Site-specific tyrosine recombinase xerD n=3 Tax=... 231 1e-59 UniRef50_A1HN49 Tyrosine recombinase XerC n=1 Tax=Thermosinus ca... 231 2e-59 UniRef50_A9NG15 Site-specific tyrosine recombinase n=1 Tax=Achol... 230 2e-59 UniRef50_C7N4T8 Tyrosine recombinase XerD n=7 Tax=Coriobacteriac... 230 3e-59 UniRef50_Q04F60 Tyrosine recombinase XerD subunit n=9 Tax=Lactob... 230 4e-59 UniRef50_UPI0001C4241D integrase/recombinase n=1 Tax=Bacillus ps... 229 6e-59 UniRef50_B1GYP8 Tyrosine recombinase XerD n=1 Tax=uncultured Ter... 229 6e-59 UniRef50_D2NUA7 Site-specific recombinase XerD n=3 Tax=Actinomyc... 229 8e-59 UniRef50_B5YFZ8 Tyrosine recombinase xerC n=1 Tax=Thermodesulfov... 229 8e-59 UniRef50_C0VHG1 Site-specific tyrosine recombinase n=1 Tax=Acine... 228 9e-59 UniRef50_A3DD82 Tyrosine recombinase XerD subunit n=13 Tax=Firmi... 228 1e-58 UniRef50_Q1Q4J1 Similar to site-specific recombinase n=1 Tax=Can... 228 1e-58 UniRef50_B3E1H7 Tyrosine recombinase xerC n=8 Tax=Desulfuromonad... 228 2e-58 UniRef50_UPI0001C41B06 tyrosine recombinase XerC n=1 Tax=Methano... 227 2e-58 UniRef50_B0TH94 Tyrosine recombinase xerc, putative n=1 Tax=Heli... 227 2e-58 UniRef50_Q72SA5 Tyrosine recombinase xerD n=6 Tax=Leptospira Rep... 227 2e-58 UniRef50_B5YGX8 Tyrosine recombinase XerD n=1 Tax=Thermodesulfov... 227 2e-58 UniRef50_Q3IDS2 Site-specific recombinase n=3 Tax=Alteromonadale... 227 2e-58 UniRef50_Q01SN8 Tyrosine recombinase XerD subunit n=1 Tax=Candid... 227 3e-58 UniRef50_C0QJ38 Site-specific recombinase XerD (DNA replication,... 227 3e-58 UniRef50_A8FD78 Tyrosine recombinase xerC n=89 Tax=Bacillaceae R... 226 3e-58 UniRef50_B7VJ63 Tyrosine recombinase xerD n=5 Tax=Vibrionales Re... 226 3e-58 UniRef50_C4LIF6 Integrase/recombinase n=1 Tax=Corynebacterium kr... 226 5e-58 UniRef50_C1A8W1 Tyrosine recombinase XerD n=1 Tax=Gemmatimonas a... 226 6e-58 UniRef50_Q0W0L4 Integrase n=2 Tax=Euryarchaeota RepID=Q0W0L4_UNCMA 226 7e-58 UniRef50_C8NEN7 Integrase/recombinase XerC n=2 Tax=Granulicatell... 226 7e-58 UniRef50_A5WBQ8 Tyrosine recombinase XerD n=6 Tax=Moraxellaceae ... 225 8e-58 UniRef50_C3RL48 Tyrosine recombinase xerC n=4 Tax=Bacteria RepID... 225 9e-58 UniRef50_C7PUZ0 Tyrosine recombinase XerD n=2 Tax=Sphingobacteri... 225 9e-58 UniRef50_A3M1C2 Site-specific tyrosine recombinase n=15 Tax=Mora... 225 9e-58 UniRef50_C2KPQ6 Tyrosine recombinase n=2 Tax=Mobiluncus mulieris... 225 1e-57 UniRef50_B3SZY7 Putative Phage integrase family protein n=1 Tax=... 225 1e-57 UniRef50_C0QM80 Tyrosine recombinase XerD n=1 Tax=Desulfobacteri... 224 1e-57 UniRef50_C0VWG3 Site-specific tyrosine recombinase XerD n=2 Tax=... 224 2e-57 UniRef50_UPI0001C31A82 tyrosine recombinase XerD n=1 Tax=Conexib... 224 2e-57 UniRef50_Q7MNQ0 Tyrosine recombinase xerD n=287 Tax=Proteobacter... 224 2e-57 UniRef50_Q03FK2 Tyrosine recombinase xerC n=72 Tax=Bacilli RepID... 224 2e-57 UniRef50_D2MQ50 Phage integrase, N-terminal SAM domain protein n... 224 2e-57 UniRef50_D2Q578 Integrase/recombinase n=3 Tax=Bifidobacterium Re... 224 2e-57 UniRef50_A6CBK7 Integrase/recombinase n=5 Tax=Planctomycetaceae ... 224 3e-57 UniRef50_B6BVG8 Tyrosine recombinase XerC n=2 Tax=Betaproteobact... 224 3e-57 UniRef50_C6WZV5 Integrase n=2 Tax=Flavobacteriaceae RepID=C6WZV5... 223 3e-57 UniRef50_Q1D804 Tyrosine recombinase xerC n=9 Tax=Deltaproteobac... 223 4e-57 UniRef50_B2KBN7 Integrase family protein n=1 Tax=Elusimicrobium ... 223 4e-57 UniRef50_B8FH24 Tyrosine recombinase XerC n=2 Tax=Desulfobactera... 223 4e-57 UniRef50_B8FRH1 Integrase family protein n=3 Tax=Clostridiales R... 223 5e-57 UniRef50_Q1NT18 Tyrosine recombinase XerC n=2 Tax=Deltaproteobac... 223 5e-57 UniRef50_Q4UYY0 Tyrosine recombinase xerC n=153 Tax=Gammaproteob... 223 5e-57 UniRef50_C2CV68 Integrase/recombinase XerD n=3 Tax=Bifidobacteri... 223 6e-57 UniRef50_B8I2V9 Tyrosine recombinase XerD n=5 Tax=Bacteria RepID... 223 6e-57 UniRef50_B4D116 Integrase family protein n=1 Tax=Chthoniobacter ... 222 8e-57 UniRef50_B1VH11 Integrase/recombinase n=1 Tax=Corynebacterium ur... 222 1e-56 UniRef50_C8XHP9 Tyrosine recombinase XerD n=1 Tax=Nakamurella mu... 221 1e-56 UniRef50_UPI0001698363 tyrosine recombinase XerD n=1 Tax=Endorif... 221 1e-56 UniRef50_A9F3K0 Site-specific recombinase n=1 Tax=Sorangium cell... 221 1e-56 UniRef50_Q11RL1 Site-specific recombinase n=15 Tax=Bacteroidetes... 221 1e-56 UniRef50_B9YZP4 Tyrosine recombinase XerC n=3 Tax=Proteobacteria... 221 1e-56 UniRef50_D1R4B2 Putative uncharacterized protein n=1 Tax=Parachl... 221 1e-56 UniRef50_C0W9S4 Tyrosine recombinase xerC n=1 Tax=Acidaminococcu... 221 2e-56 UniRef50_Q2RJP7 Tyrosine recombinase XerD subunit n=1 Tax=Moorel... 221 2e-56 UniRef50_B0VFS7 Site-specific recombinase, phage integrase famil... 221 2e-56 UniRef50_D2RKK7 Tyrosine recombinase XerC n=3 Tax=Firmicutes Rep... 220 3e-56 UniRef50_C8R2R7 Tyrosine recombinase XerD n=1 Tax=Desulfurivibri... 220 3e-56 UniRef50_Q6MD42 Probable XerD protein n=1 Tax=Candidatus Protoch... 220 4e-56 UniRef50_Q8KET0 Tyrosine recombinase xerD n=12 Tax=Chlorobiaceae... 220 4e-56 UniRef50_Q2IIH9 Tyrosine recombinase XerD subunit n=11 Tax=Delta... 219 4e-56 UniRef50_Q2PYI3 Tyrosine recombinase xerC n=1 Tax=uncultured mar... 219 4e-56 UniRef50_D1N8W9 Tyrosine recombinase XerD n=1 Tax=Victivallis va... 219 5e-56 UniRef50_A6U170 Tyrosine recombinase xerC n=66 Tax=Staphylococca... 219 5e-56 UniRef50_C1SMY6 Site-specific recombinase XerD n=1 Tax=Denitrovi... 219 5e-56 UniRef50_B1GYR5 Tyrosine recombinase XerC n=1 Tax=uncultured Ter... 219 5e-56 UniRef50_B9XL74 Integrase family protein n=1 Tax=bacterium Ellin... 219 5e-56 UniRef50_Q67PC5 Recombinase n=2 Tax=Firmicutes RepID=Q67PC5_SYMTH 219 5e-56 UniRef50_B5EB31 Tyrosine recombinase XerD n=4 Tax=Deltaproteobac... 219 6e-56 UniRef50_B3PEI6 Tyrosine recombinase XerC n=1 Tax=Cellvibrio jap... 219 7e-56 UniRef50_A8RBK4 Putative uncharacterized protein n=1 Tax=Eubacte... 219 8e-56 UniRef50_B9YAX8 Putative uncharacterized protein n=1 Tax=Holdema... 218 2e-55 UniRef50_Q60AJ2 Integrase/recombinase XerC n=1 Tax=Methylococcus... 218 2e-55 UniRef50_C7LWB1 Integrase family protein n=2 Tax=Desulfovibriona... 218 2e-55 UniRef50_D0WF42 Tyrosine recombinase XerD n=1 Tax=Slackia exigua... 217 2e-55 UniRef50_D2R836 Tyrosine recombinase XerC n=1 Tax=Pirellula stal... 217 2e-55 UniRef50_C8WWD9 Integrase family protein n=2 Tax=Alicyclobacillu... 217 2e-55 UniRef50_O26979 Probable tyrosine recombinase xerC-like n=3 Tax=... 217 3e-55 UniRef50_D0AM75 Phage integrase n=14 Tax=Bacilli RepID=D0AM75_ENTFC 217 3e-55 UniRef50_C1SMP5 Site-specific recombinase XerD n=1 Tax=Denitrovi... 217 3e-55 UniRef50_Q7NVH1 Tyrosine recombinase xerC n=1 Tax=Chromobacteriu... 216 5e-55 UniRef50_Q2C2Q0 Tyrosine recombinase n=4 Tax=Gammaproteobacteria... 216 6e-55 UniRef50_B1ZQV6 Tyrosine recombinase XerD n=3 Tax=Verrucomicrobi... 216 6e-55 UniRef50_A4G2A1 Tyrosine recombinase XerD n=3 Tax=Proteobacteria... 216 7e-55 UniRef50_B0VFY6 Tyrosine recombinase xerD n=1 Tax=Candidatus Clo... 216 7e-55 UniRef50_B2UMQ9 Tyrosine recombinase XerC n=4 Tax=Verrucomicrobi... 216 7e-55 UniRef50_Q1MRT1 Site-specific recombinase n=3 Tax=Desulfovibrion... 215 8e-55 UniRef50_Q0VM16 Tyrosine recombinase xerC n=20 Tax=Proteobacteri... 215 8e-55 UniRef50_Q7UQK2 Integrase/recombinase n=1 Tax=Rhodopirellula bal... 215 8e-55 UniRef50_B3DV17 Site-specific recombinase XerD n=1 Tax=Methylaci... 215 1e-54 UniRef50_P44630 Tyrosine recombinase xerD n=84 Tax=Proteobacteri... 215 1e-54 UniRef50_A6G731 Integrase/recombinase XerD n=1 Tax=Plesiocystis ... 215 1e-54 UniRef50_Q2LT92 Tyrosine recombinase xerC n=1 Tax=Syntrophus aci... 214 1e-54 UniRef50_D0U650 Site-specific recombinase XerD n=1 Tax=unculture... 214 2e-54 UniRef50_B2A335 Tyrosine recombinase xerC n=2 Tax=Clostridia Rep... 214 2e-54 UniRef50_Q7MQB9 Tyrosine recombinase xerC n=141 Tax=Gammaproteob... 214 2e-54 UniRef50_D2RA84 Tyrosine recombinase XerD n=1 Tax=Gardnerella va... 214 2e-54 UniRef50_UPI0000D54C0A tyrosine recombinase n=1 Tax=Psychroflexu... 214 2e-54 UniRef50_Q02C57 Phage integrase family protein n=1 Tax=Candidatu... 214 3e-54 UniRef50_Q49890 Tyrosine recombinase xerD n=54 Tax=Actinobacteri... 214 3e-54 UniRef50_D0SK93 Tyrosine recombinase XerC n=1 Tax=Acinetobacter ... 214 3e-54 UniRef50_A5EXM2 Tyrosine recombinase XerD n=1 Tax=Dichelobacter ... 213 3e-54 UniRef50_B6YWN8 Probable tyrosine recombinase xerC-like n=9 Tax=... 213 3e-54 UniRef50_A6KYQ9 Integrase n=60 Tax=Bacteria RepID=A6KYQ9_BACV8 213 3e-54 UniRef50_A1VDD4 Tyrosine recombinase XerD subunit n=12 Tax=Desul... 213 4e-54 UniRef50_D1AIZ1 Integrase family protein n=2 Tax=Fusobacteriacea... 213 4e-54 UniRef50_D0U5Z8 Tyrosine recombinase XerD n=1 Tax=uncultured act... 213 4e-54 UniRef50_B2U7W2 Tyrosine recombinase xerC n=58 Tax=cellular orga... 213 5e-54 UniRef50_C4FX95 Putative uncharacterized protein n=1 Tax=Catonel... 213 6e-54 UniRef50_C0QVM8 Site-specific recombinase XerD n=3 Tax=Brachyspi... 212 7e-54 UniRef50_A6DTG9 Integrase/recombinase n=1 Tax=Lentisphaera arane... 212 8e-54 UniRef50_Q1G9V2 Tyrosine recombinase xerC n=28 Tax=Lactobacillus... 212 9e-54 UniRef50_A8VRZ0 Putative helix-turn-helix protein, YlxM/p13 fami... 212 1e-53 UniRef50_C5TJ38 Tyrosine recombinase XerD n=5 Tax=Neisseriaceae ... 212 1e-53 UniRef50_C4L386 Tyrosine recombinase XerD n=3 Tax=Firmicutes Rep... 211 1e-53 UniRef50_D0W8E1 Tyrosine recombinase XerC n=2 Tax=Neisseria RepI... 211 1e-53 UniRef50_Q7ZAJ8 Tyrosine recombinase xerD n=13 Tax=Gammaproteoba... 211 1e-53 UniRef50_Q8NNZ9 Tyrosine recombinase xerC n=13 Tax=Actinomycetal... 211 2e-53 UniRef50_B8FPN6 Tyrosine recombinase XerD n=2 Tax=Desulfitobacte... 211 2e-53 UniRef50_C9RQE0 Integrase family protein n=1 Tax=Fibrobacter suc... 211 2e-53 UniRef50_B2HX80 Site-specific recombinase XerC n=17 Tax=Acinetob... 211 2e-53 UniRef50_Q04F40 Tyrosine recombinase XerC subunit n=5 Tax=Leucon... 211 2e-53 UniRef50_B0MY63 Putative uncharacterized protein n=1 Tax=Alistip... 211 2e-53 UniRef50_C4LJB1 Integrase/recombinase n=3 Tax=Corynebacterium Re... 211 2e-53 UniRef50_C5V602 Tyrosine recombinase XerC n=1 Tax=Gallionella fe... 210 3e-53 UniRef50_Q1RHT1 Tyrosine recombinase xerD n=18 Tax=Rickettsieae ... 210 3e-53 UniRef50_Q7ZAK0 Tyrosine recombinase xerC n=4 Tax=Corynebacteriu... 210 3e-53 UniRef50_C6LGQ0 Tyrosine recombinase XerD n=3 Tax=Clostridiales ... 210 3e-53 UniRef50_C5RBD8 Integrase/recombinase n=1 Tax=Weissella paramese... 210 4e-53 UniRef50_A0L875 Tyrosine recombinase XerD subunit n=2 Tax=Proteo... 210 4e-53 UniRef50_B1ZW75 Integrase family protein n=2 Tax=Verrucomicrobia... 210 4e-53 UniRef50_Q1LSD3 Tyrosine recombinase XerC subunit n=48 Tax=Prote... 210 4e-53 UniRef50_D1W8B5 Putative tyrosine recombinase XerD n=1 Tax=Prevo... 210 4e-53 UniRef50_Q5WFP9 Site-specific tyrosine recombinase n=1 Tax=Bacil... 209 4e-53 UniRef50_B9XMB7 Integrase family protein n=1 Tax=bacterium Ellin... 209 5e-53 UniRef50_D2MLX1 Phage integrase, N-terminal SAM domain protein n... 209 5e-53 UniRef50_C5AC95 Tyrosine recombinase XerD n=82 Tax=cellular orga... 209 6e-53 UniRef50_Q0ACL7 Tyrosine recombinase XerC n=4 Tax=Gammaproteobac... 209 7e-53 UniRef50_A9FAZ0 Integrase/recombinase n=1 Tax=Sorangium cellulos... 208 1e-52 UniRef50_D2Q591 Integrase/recombinase (XerD/RipX family) n=10 Ta... 208 1e-52 UniRef50_A2U2P8 Phage integrase family protein n=1 Tax=Polaribac... 208 1e-52 UniRef50_C5SKT5 Integrase family protein n=1 Tax=Asticcacaulis e... 208 2e-52 UniRef50_C4L615 Integrase family protein n=2 Tax=Exiguobacterium... 208 2e-52 UniRef50_B9YCM7 Putative uncharacterized protein n=1 Tax=Holdema... 208 2e-52 UniRef50_Q1IMN8 Tyrosine recombinase XerD subunit n=3 Tax=Bacter... 208 2e-52 UniRef50_B8IZE7 Integrase family protein n=5 Tax=Desulfovibriona... 208 2e-52 UniRef50_D0W4M6 Tyrosine recombinase XerD n=1 Tax=Neisseria cine... 208 2e-52 UniRef50_B2KAP5 Integrase family protein n=1 Tax=Elusimicrobium ... 207 2e-52 UniRef50_A1KS31 Tyrosine recombinase xerC n=25 Tax=Neisseriaceae... 207 2e-52 UniRef50_A1RWD6 Phage integrase family protein n=1 Tax=Thermofil... 207 3e-52 UniRef50_D2RA91 Site-specific tyrosine recombinase XerC n=10 Tax... 207 4e-52 UniRef50_Q9JV76 Tyrosine recombinase xerD n=22 Tax=Neisseria Rep... 206 4e-52 UniRef50_D0GL18 Tyrosine recombinase XerD n=1 Tax=Leptotrichia g... 206 4e-52 UniRef50_D2LQ39 Integrase family protein n=3 Tax=Aciduliprofundu... 206 4e-52 UniRef50_C0W041 Possible integrase/recombinase n=1 Tax=Actinomyc... 206 4e-52 UniRef50_A0LZY5 Phage integrase family protein n=3 Tax=Bacteria ... 206 5e-52 UniRef50_C6J3X1 Tyrosine recombinase XerD n=1 Tax=Paenibacillus ... 206 5e-52 UniRef50_B3QW74 Integrase family protein n=1 Tax=Chloroherpeton ... 206 6e-52 UniRef50_A6TQC7 Phage integrase family protein n=3 Tax=Clostridi... 206 7e-52 UniRef50_D1B5G4 Integrase family protein n=2 Tax=Synergistaceae ... 206 7e-52 UniRef50_A0LEB8 Tyrosine recombinase xerC n=1 Tax=Syntrophobacte... 205 8e-52 UniRef50_A8UM85 Tyrosine type site-specific recombinase n=2 Tax=... 205 9e-52 UniRef50_A8F7B4 Tyrosine recombinase xerC n=1 Tax=Thermotoga let... 205 9e-52 UniRef50_Q0AFS1 Tyrosine recombinase XerC subunit n=6 Tax=Betapr... 205 1e-51 UniRef50_D2R3Y9 Integrase family protein n=1 Tax=Pirellula stale... 205 1e-51 UniRef50_A3ZUD5 Integrase/recombinase n=2 Tax=Planctomycetaceae ... 205 1e-51 UniRef50_A6CC23 Integrase/recombinase n=2 Tax=Planctomyces RepID... 205 1e-51 UniRef50_C0W1H5 Possible integrase/recombinase n=1 Tax=Actinomyc... 205 1e-51 UniRef50_B7CAN0 Putative uncharacterized protein n=1 Tax=Eubacte... 204 2e-51 UniRef50_Q2GEQ3 Tyrosine recombinase XerD n=2 Tax=Neorickettsia ... 204 2e-51 UniRef50_Q0F1F3 Tyrosine recombinase n=1 Tax=Mariprofundus ferro... 204 2e-51 UniRef50_A6DQI4 Tyrosine recombinase n=1 Tax=Lentisphaera araneo... 204 2e-51 UniRef50_C2D6I8 Tyrosine recombinase n=1 Tax=Atopobium vaginae D... 204 2e-51 UniRef50_Q31IL8 Tyrosine recombinase XerC subunit n=1 Tax=Thiomi... 204 2e-51 UniRef50_C0AAZ7 Integrase family protein n=2 Tax=Bacteria RepID=... 204 2e-51 UniRef50_A4TEB1 Tyrosine recombinase xerC n=10 Tax=Actinomycetal... 204 2e-51 UniRef50_C8P0J8 Tyrosine recombinase XerC n=1 Tax=Erysipelothrix... 204 3e-51 UniRef50_C4F8T8 Putative uncharacterized protein n=2 Tax=Collins... 204 3e-51 UniRef50_A1UEH7 Tyrosine recombinase xerC n=24 Tax=Mycobacterium... 204 3e-51 UniRef50_B3QM22 Tyrosine recombinase xerC n=10 Tax=Chlorobiaceae... 203 5e-51 UniRef50_UPI0000510416 phage integrase family protein n=1 Tax=Br... 203 6e-51 UniRef50_Q12S88 Tyrosine recombinase XerC n=1 Tax=Shewanella den... 203 6e-51 UniRef50_UPI0001C31AAB integrase family protein n=1 Tax=Conexiba... 202 7e-51 UniRef50_A6H1H3 Integrase/recombinase n=2 Tax=Bacteria RepID=A6H... 202 7e-51 UniRef50_UPI00019772C5 site-specific tyrosine recombinase XerC n... 202 7e-51 UniRef50_C8WAJ5 Integrase family protein n=2 Tax=Atopobium RepID... 202 8e-51 UniRef50_C6J0X8 Phage integrase n=1 Tax=Paenibacillus sp. oral t... 202 8e-51 UniRef50_A4C321 Tyrosine type site-specific recombinase n=4 Tax=... 202 9e-51 UniRef50_Q87DN0 Tyrosine recombinase xerD n=57 Tax=Proteobacteri... 202 9e-51 UniRef50_Q1IMN9 Tyrosine recombinase XerC subunit n=1 Tax=Candid... 202 9e-51 UniRef50_Q97HE5 Tyrosine recombinase xerD n=18 Tax=Clostridium R... 202 1e-50 UniRef50_C7R6T2 Tyrosine recombinase XerC n=1 Tax=Kangiella kore... 202 1e-50 UniRef50_A4ECJ8 Putative uncharacterized protein n=1 Tax=Collins... 202 1e-50 UniRef50_C1F4E0 Putative tyrosine recombinase XerC n=1 Tax=Acido... 201 1e-50 UniRef50_A3EW74 Putative phage integrase family protein n=2 Tax=... 201 1e-50 UniRef50_UPI000185BEBB tyrosine recombinase XerC n=1 Tax=Coryneb... 201 2e-50 UniRef50_B2UNK4 Integrase family protein n=2 Tax=Verrucomicrobia... 201 2e-50 UniRef50_D0LHX4 Integrase family protein n=1 Tax=Haliangium ochr... 201 2e-50 UniRef50_A0L4T4 Tyrosine recombinase XerC subunit n=2 Tax=Bacter... 201 2e-50 UniRef50_B2S2Y8 Integrase/recombinase n=4 Tax=Treponema RepID=B2... 201 2e-50 UniRef50_A3XLJ3 Tyrosine type site-specific recombinase n=1 Tax=... 201 2e-50 UniRef50_Q6A7J6 Integrase/recombinase n=4 Tax=Propionibacterium ... 201 2e-50 UniRef50_B3DX82 Site-specific recombinase XerD n=1 Tax=Methylaci... 201 2e-50 UniRef50_A7BDE1 Putative uncharacterized protein n=1 Tax=Actinom... 201 2e-50 UniRef50_D1KE10 Site-specific recombinase XerC n=1 Tax=unculture... 200 3e-50 UniRef50_A5D2W6 Tyrosine recombinase xerC n=5 Tax=Clostridia Rep... 200 3e-50 UniRef50_D2NTN2 Integrase n=1 Tax=Rothia mucilaginosa DY-18 RepI... 200 4e-50 UniRef50_B6WSE8 Putative uncharacterized protein n=1 Tax=Desulfo... 200 4e-50 UniRef50_Q9HIM5 Site-specific integrase/recombinase XerD related... 199 5e-50 UniRef50_D1N7Z4 Integrase family protein n=1 Tax=Victivallis vad... 199 6e-50 UniRef50_B0TX96 Phage integrase family protein n=19 Tax=Francise... 199 6e-50 UniRef50_Q0EWI0 Tyrosine recombinase XerD n=1 Tax=Mariprofundus ... 199 7e-50 UniRef50_D0L0D4 Integrase family protein n=1 Tax=Halothiobacillu... 199 7e-50 UniRef50_Q9A437 Tyrosine recombinase xerD n=11 Tax=Alphaproteoba... 199 7e-50 UniRef50_C7M6X5 Integrase family protein n=2 Tax=Capnocytophaga ... 199 9e-50 UniRef50_C2D807 Possible integrase/recombinase XerD n=1 Tax=Atop... 199 9e-50 UniRef50_A9NHC9 Integrase/recombinase, XerD-like protein n=1 Tax... 198 1e-49 UniRef50_A0QJ30 Tyrosine recombinase XerC n=4 Tax=Actinobacteria... 198 1e-49 UniRef50_D0Y3M6 Integrase family protein n=1 Tax=Caulobacter seg... 198 1e-49 UniRef50_C6NUW8 Site-specific recombinase XerD n=1 Tax=Acidithio... 198 2e-49 UniRef50_C6R1G4 Tyrosine recombinase XerC n=1 Tax=Rothia mucilag... 198 2e-49 UniRef50_Q0C629 Tyrosine recombinase XerD n=2 Tax=Hyphomonadacea... 198 2e-49 UniRef50_C1ABE3 Tyrosine recombinase XerC n=1 Tax=Gemmatimonas a... 198 2e-49 UniRef50_B0B7R6 Tyrosine recombinase xerC n=8 Tax=Chlamydia RepI... 198 2e-49 UniRef50_B6YR66 Site-specific recombinase XerC n=27 Tax=Bacteroi... 198 2e-49 Sequences not found previously or not previously below threshold: >UniRef50_Q47036 Probable site-specific recombinase in afa region n=45 Tax=Bacteria RepID=INTL_ECOLX Length = 246 Score = 259 bits (663), Expect = 5e-68, Method: Composition-based stats. Identities = 242/246 (98%), Positives = 245/246 (99%) Query: 1 MNNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ 60 MNNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ Sbjct: 1 MNNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ 60 Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 RHHMLFATLWNTGMRIGEAR++TPESFDLDGVRPFVR+LSEKVRARRGRPPKDEVRLVPL Sbjct: 61 RHHMLFATLWNTGMRIGEARIVTPESFDLDGVRPFVRVLSEKVRARRGRPPKDEVRLVPL 120 Query: 121 TDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFR 180 TDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSI VTPHTFR Sbjct: 121 TDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSISVTPHTFR 180 Query: 181 HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILR 240 HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILR Sbjct: 181 HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILR 240 Query: 241 TLPPLK 246 TLPPLK Sbjct: 241 TLPPLK 246 >UniRef50_D0BKQ9 Tyrosine recombinase XerD n=2 Tax=Firmicutes RepID=D0BKQ9_9LACT Length = 297 Score = 247 bits (632), Expect = 2e-64, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 74/225 (32%), Gaps = 35/225 (15%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEAR 80 + ++ + P L EV+ +L R + L+ TGMR+ E Sbjct: 91 TNPVQPLKVPKKSKMLPKALTVDEVTQVLNSCDTSTVLGLRDKAMLELLYATGMRVSELI 150 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR--- 137 L L+ G+ K R++P+ + ++ ++ R Sbjct: 151 TLKLSDLHLE----------LGFLQTIGKGNKQ--RIIPIGQ-AATNWVQHYLTYARVVL 197 Query: 138 ---------PRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHML 188 T + LK+ V+ A V+PHT RHS+ H+L Sbjct: 198 EQESNPVEYLFLNHRGNGFTRQGFWKNLKKIVQEA-----GVHKDVSPHTLRHSFATHIL 252 Query: 189 YHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGR 233 +++Q L GH D + ++YT + M + Sbjct: 253 EAGADLRIVQELLGHSDISTTQIYTHLTNERMKEIYQQAHPRAKK 297 >UniRef50_Q1PZN1 Similar to site-specific tyrosine recombinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PZN1_9BACT Length = 298 Score = 241 bits (617), Expect = 1e-62, Method: Composition-based stats. Identities = 35/215 (16%), Positives = 81/215 (37%), Gaps = 28/215 (13%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARM 81 + + + P ++ + LL R + TL++TGMR+ E Sbjct: 102 NPVEQIKTPKTDKKLPGFMSVNDTEILLNQPDTCNLSGLRDKAIMETLYSTGMRVSELVG 161 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRR 141 + D + RG+ K+ R++P+ + + + ++ ++ + Sbjct: 162 INIADIDFHS----------GIVKVRGKGSKE--RILPVGNHA-LNAIQLYLEKRKADNE 208 Query: 142 EPLW-----AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 +T+ ++ +++ +++A + V+PHTFRHS+ H+L + + Sbjct: 209 ALFLNKFHGRLTERSVARMIEKYMKKAA-----MHLRVSPHTFRHSFATHLLDNGADLRA 263 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 +Q GH + ++YT V + Sbjct: 264 VQEFLGHSSLSTTQIYTHVTTERLKQVYDKTHPRA 298 >UniRef50_Q0AZB8 Tyrosine recombinase XerD subunit n=2 Tax=Firmicutes RepID=Q0AZB8_SYNWW Length = 296 Score = 241 bits (615), Expect = 2e-62, Method: Composition-based stats. Identities = 42/240 (17%), Positives = 77/240 (32%), Gaps = 34/240 (14%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRH 62 +S + I G S P L EV L+ R Sbjct: 75 LSSIKSYYKFLILEGELDKNPSSDLETPKIKRKLPQVLSIEEVDKLMEQPNPVVPLGIRD 134 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 + ++ TG+R+ E L E + + G+ K+ R++P+ Sbjct: 135 RAMLELMYGTGIRVSELLSLQVEDLN----------PTAGFLRCMGKGRKE--RIIPVNQ 182 Query: 123 ISYVRQMESWMITTRPRR-----------REPLWAVTDETMRNWLKQAVRRAEADGVHFS 171 S + ++ ++ R ++ + L V +AE Sbjct: 183 TS-IDWVQRYLARVRNSLVKNPLERTLFLNARGRPLSRQGFFKILGNYVEKAE-----LE 236 Query: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 VTPHT RHS+ H+L + + +Q + GH D + ++YT + + Sbjct: 237 KEVTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHLTKSRLREVYQQYHPRS 296 >UniRef50_Q3Z771 Tyrosine recombinase XerD n=5 Tax=Dehalococcoides RepID=Q3Z771_DEHE1 Length = 302 Score = 241 bits (615), Expect = 2e-62, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 78/227 (34%), Gaps = 27/227 (11%) Query: 19 IAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYM------PDQRHHMLFATLWNT 72 +A G P + +V ALL +R + L+ + Sbjct: 90 VAEGKLKENPTENISTPKVGKPLPDAISISQVRALLNQPVKSGSSEAKRDKAMLELLYAS 149 Query: 73 GMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESW 132 GMR+ E L DL E G+ K+ R++P+ + + ++ + Sbjct: 150 GMRVTELVNLNVLDVDL----------KEGFVRCFGKGRKE--RMIPIYPQA-AQSIQEY 196 Query: 133 MITTRPR----RREPLWAVTDET---MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIM 185 + RP E + R L Q ++ + VTPHT RHS+ Sbjct: 197 LTEIRPNLVRAETEKALFLNRRGDRLTRQGLWQILKGYAREA-GLDDVVTPHTLRHSFAT 255 Query: 186 HMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDG 232 HML + +Q L GH + + ++YT + + + + Sbjct: 256 HMLSGGADLRSVQELLGHANISTTQIYTHLTSEHIKRSYEKAHPRAK 302 >UniRef50_B8HGE6 Tyrosine recombinase XerD n=37 Tax=Actinobacteridae RepID=B8HGE6_ARTCA Length = 362 Score = 239 bits (610), Expect = 7e-62, Method: Composition-based stats. Identities = 53/223 (23%), Positives = 85/223 (38%), Gaps = 18/223 (8%) Query: 21 PGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYM-----PDQRHHMLFATLWNTGMR 75 G + S + P + EV+ +L R L L++TG R Sbjct: 144 EGHTASDPASEVHPPMAGKRLPKAITVDEVTRILEAAGTDTATGLRDRALLEFLYSTGAR 203 Query: 76 IGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMIT 135 I EA L + L G + G+ K+ RLVPL R +E++++ Sbjct: 204 ISEAVGLDVDDISLAGDD---TEQGPAIVRLFGKGSKE--RLVPLGSY-GARALEAYLVR 257 Query: 136 TRP-----RRREPLWAVTDETMRNWLKQA--VRRAEADGVHFSIPVTPHTFRHSYIMHML 188 RP + P + R + A + + A+ + + V+PHT RHS+ H+L Sbjct: 258 GRPLLAAKGKGTPALFLNARGGRISRQSAWTILKVAAEKANITRDVSPHTLRHSFATHLL 317 Query: 189 YHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 +V+Q L GH + +VYT V A + A Sbjct: 318 EGGADVRVVQELLGHASVTTTQVYTLVTADTLREVYAAAHPRA 360 >UniRef50_Q71Y59 Tyrosine recombinase xerD n=19 Tax=Firmicutes RepID=XERD_LISMF Length = 297 Score = 238 bits (609), Expect = 1e-61, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 75/223 (33%), Gaps = 35/223 (15%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFY-----MPDQRHHMLFATLWNTGMRIGEAR 80 + P L +V LL R + L+ TG+R+ E Sbjct: 93 HDPMIQIETPKQAQGLPKVLNLDDVEKLLSSSDTSTPLGLRDQAMMEILYATGLRVTELV 152 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR 140 L + L G+ K+ R++PL + +E ++ RP+ Sbjct: 153 SLKMDDLHLHM----------GFIQTIGKGDKE--RIIPLGKTATT-VLEKYLEEARPKL 199 Query: 141 REPLWA------------VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHML 188 R P + +T + LK + P+TPHT RHS+ H+L Sbjct: 200 RRPKYRNDFVFLNHHGQGLTRQGFWKILKGIAKE-----SGIEKPITPHTLRHSFATHLL 254 Query: 189 YHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 + + +Q L GH D + ++YT V L + Sbjct: 255 ENGADLRSVQELLGHADISTTQIYTHVTKLRLKDVYKQFHPRA 297 >UniRef50_Q2LSM9 Integrase/recombinase n=6 Tax=Bacteria RepID=Q2LSM9_SYNAS Length = 296 Score = 238 bits (608), Expect = 1e-61, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 78/221 (35%), Gaps = 34/221 (15%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYM-----PDQRHHMLFATLWNTGMRIGEAR 80 ++ +A P L E+ LL R + ++ TG+R+ E Sbjct: 93 QNPVAEIELAKVWMRLPDTLSHEEMDQLLSQPGVRTDSAIRDTAMLELMYATGLRVSELI 152 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR- 139 LT S + V +G+ K+ R+VP+ ++Y + + RP+ Sbjct: 153 SLTTGSINWQVGYLVV----------QGKGNKE--RIVPIGQVAY-EHVRRYFDEVRPKC 199 Query: 140 ----------RREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLY 189 + +T + +++ +A V PHTFRHS+ H+L Sbjct: 200 IRGAQTNVLFLNKSGQGMTRQGFWKLVRKYAVKA-----GLQKKVHPHTFRHSFASHLLE 254 Query: 190 HRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 + +Q + GH D + ++YT V + Sbjct: 255 GGADLRSVQMMLGHADISTTQIYTHVTREHLKDIHKKYHPR 295 >UniRef50_Q5HFS5 Tyrosine recombinase xerD n=101 Tax=Firmicutes RepID=XERD_STAAC Length = 295 Score = 237 bits (606), Expect = 2e-61, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 85/245 (34%), Gaps = 34/245 (13%) Query: 3 NVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP---- 58 ++ ++ I L P L EV ALL Sbjct: 69 SIARFISTIRSFHQFAIREKYAAKDPTVLLDSPKYDKKLPDVLNVDEVLALLETPDLNKI 128 Query: 59 -DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRL 117 R + L+ TGMR+ E L E+ +L G+ K+ R+ Sbjct: 129 NGYRDRTMLELLYATGMRVSELIHLELENVNL----------IMGFVRVFGKGDKE--RI 176 Query: 118 VPLTDISYVRQMESWMITTRPRR-----------REPLWAVTDETMRNWLKQAVRRAEAD 166 VPL D + + + +++ T RP+ ++ + + +KQ +A Sbjct: 177 VPLGD-AVIEYLTTYIETIRPQLLKKTVTEVLFLNMHGKPLSRQAIWKMIKQNGVKA--- 232 Query: 167 GVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAV 226 + +TPHT RHS+ H+L + + +Q + GH D + ++YT V + Sbjct: 233 --NIKKTLTPHTLRHSFATHLLENGADLRAVQEMLGHSDISTTQLYTHVSKSQIRKMYNQ 290 Query: 227 PFTGD 231 Sbjct: 291 FHPRA 295 >UniRef50_A8RBU2 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RBU2_9FIRM Length = 302 Score = 237 bits (606), Expect = 2e-61, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 71/217 (32%), Gaps = 23/217 (10%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFY-----MPDQRHHMLFATLWNTGMRIGEARM 81 + P +L E+ L M R +F ++ G+R+ EA Sbjct: 99 NPFVYFKTPKIAKRIPEFLFYDEIEIFLESFDLNSMQGLRDRTMFELMYACGLRVSEAVS 158 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP--- 138 L D + G+ K+ RLVP D++ + S++ R Sbjct: 159 LRTRDVDFADNILHI----------HGKGDKE--RLVPFYDLAK-ELLVSYIKDVRDVWA 205 Query: 139 RRREPLWAVTDETMRNWLK--QAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 E V + + Q + + + V PH FRHS+ H+L + + Sbjct: 206 TSDETALFVNQRGKKLTTRGVQYLMNKAVEKCDLHVHVHPHMFRHSFATHLLDNGADLRY 265 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGR 233 +Q L GH + ++Y V + A Sbjct: 266 VQELLGHSSLSTTQIYVHVSKERLKAAYEHAHPRAKE 302 >UniRef50_B5YFC5 Recombinase n=2 Tax=Dictyoglomus RepID=B5YFC5_DICT6 Length = 301 Score = 236 bits (603), Expect = 5e-61, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 83/223 (37%), Gaps = 27/223 (12%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEAR 80 + P +L EV LL R + TL+ TG+R+ E Sbjct: 93 EDLTVFIPTPKAEKKLPQFLSVDEVMKLLNSPSLDDLIGIRDRAIIETLYATGIRVSELV 152 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR- 139 + E + + V G+ K+ + +V ++ ++ + RP+ Sbjct: 153 GMNEEDINWNYGEIRV----------FGKRAKERIVIV---GEETLKILQLYKDHVRPKL 199 Query: 140 --RREPLWAVTDETMR---NWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPR 194 + E + + + R ++ +++ D F+ V+PHT RH++ H+L Sbjct: 200 LKKPEKAFFLNAKGGRISDRAIRMIIKKYTKD---FNKKVSPHTLRHTFATHLLEGGADL 256 Query: 195 KVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAE 237 + +Q L GH + ++YT + + + T + + + Sbjct: 257 RYVQELLGHVRISTTQIYTHLTSEQIRKTYTLSHPRAIKKETK 299 >UniRef50_B3GZ58 Tyrosine recombinase xerC n=39 Tax=Gammaproteobacteria RepID=XERC_ACTP7 Length = 306 Score = 235 bits (601), Expect = 8e-61, Method: Composition-based stats. Identities = 38/218 (17%), Positives = 78/218 (35%), Gaps = 20/218 (9%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFY----MPDQRHHMLFATLWNTGMRIGEARML 82 + ++ P + A ++ LL D R + ++++G+R+ E + L Sbjct: 100 NPAVGIKAPKASKRLPKNIDAEQIGQLLTSDSHEPSDLRDLAMMELMYSSGLRLSELQGL 159 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP-RRR 141 DL G G+ K+ R+VP+ + + + W+ + + Sbjct: 160 DLGDMDLAGRE----------VRLLGKGNKE--RIVPIGSKA-LEALNRWLAVRNQFKPQ 206 Query: 142 EPLWAVTDETMRNWLK--QAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQA 199 + + R + Q V + + + PH RHS+ HML + +Q Sbjct: 207 DNAVFLNKRGGRLSHRSIQLVMQKWGEKQGLESHLHPHKLRHSFATHMLEASGDLRAVQE 266 Query: 200 LAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAE 237 L GH + + ++YT + +A R + Sbjct: 267 LLGHSNLATTQIYTHLDFQHLAKIYDAAHPRAKRKKQD 304 >UniRef50_D2RKG6 Tyrosine recombinase XerD n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RKG6_ACIFE Length = 301 Score = 234 bits (597), Expect = 2e-60, Method: Composition-based stats. Identities = 46/237 (19%), Positives = 80/237 (33%), Gaps = 27/237 (11%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYM-----PDQRH 62 + + A G + T P + EV L R Sbjct: 79 LAALKAFFRFMTAEGFLEEDPSEVVEAGTRGVVLPKVMSLEEVKQLFSAPDLTQPEGFRD 138 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 + ++ TGMR+ E L S +L+ G+ K+ RL+PL Sbjct: 139 RTMLEVMYATGMRVSELLSLKRASVNLETRYVI----------AYGKGAKE--RLIPLGQ 186 Query: 123 ISYVRQMESWMITTRP-----RRREPLWAVTDETM---RNWLKQAVRRAEADGVHFSIPV 174 + ++ ++ ++ RP + + +T R Q + RA P+ Sbjct: 187 YA-IQYLKKYLAQVRPLFVKNGKDDDSLFLTIRGTGMTRQRFWQII-RAYGVKAGLQKPL 244 Query: 175 TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 TPH RHS+ HML + + +Q L GH D + ++YT + + Sbjct: 245 TPHILRHSFATHMLDNGADLRTVQELLGHADISTTQIYTHLTNNRLKKVFDKTHPRA 301 >UniRef50_C0WCK3 Recombinase n=1 Tax=Acidaminococcus sp. D21 RepID=C0WCK3_9FIRM Length = 298 Score = 234 bits (597), Expect = 3e-60, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 84/237 (35%), Gaps = 27/237 (11%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSAL-----LFYMPDQRH 62 + + A G + T P L EV+ L L R Sbjct: 76 LAALKAFFRFMTAEGTIEVDPCEVVESETRGMVLPKVLSVDEVNRLFEAPDLDTPEGYRD 135 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 + ++ TGMR+ E L S +L + G+ K+ RL+PL Sbjct: 136 RTMLEVMYATGMRVSELLALKVGSVNL----------ASHYVIAYGKGAKE--RLIPLGH 183 Query: 123 ISYVRQMESWMITTRP------RRREPLWAVTDETM--RNWLKQAVRRAEADGVHFSIPV 174 + + ++ ++ RP R + L+ T R Q ++ VH + + Sbjct: 184 YA-IEYLKEYLSRVRPHFVKENRPCDDLFLTIRGTGMTRQRFWQLIKNYGL-KVHIAKSL 241 Query: 175 TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 TPH RHS+ HML + + +Q L GH D + ++YT + + A Sbjct: 242 TPHILRHSFATHMLDNGADLRTVQELLGHSDISTTQIYTHLTNHRLKAIYDKSHPRA 298 >UniRef50_A8YV25 Integrase/recombinase n=13 Tax=Lactobacillus RepID=A8YV25_LACH4 Length = 301 Score = 233 bits (596), Expect = 3e-60, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 88/237 (37%), Gaps = 26/237 (10%) Query: 7 LQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQR 61 L +S + + + + P L E++ LL R Sbjct: 77 LISSMRKFYQWLARQNIQKLNPMLEIDLPKKERRLPVALNQKEINDLLAQPDIKRKLGLR 136 Query: 62 HHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLT 121 + TL+ TGMR+ E L + D + G+ K+ RL+P++ Sbjct: 137 DRAILETLYATGMRVSELINLELQDLHED----------LGLVRVLGKGSKE--RLIPIS 184 Query: 122 DIS------YVRQMESWMITTRPRRREPLWAVTD--ETMRNWLKQAVRRAEADGVHFSIP 173 ++ Y +++ +I + E ++ + + R + Q +++ + Sbjct: 185 SVALHWIKQYQKEVRDPLILKAGQNDEHIFLNSRAKQLTRQAIWQMIKKYC-QSAGITKD 243 Query: 174 VTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 VTPHT RH++ H+L + +V+Q + GH D + ++YT + + Sbjct: 244 VTPHTLRHTFATHLLENGADLRVVQEILGHSDISTTQIYTNLSQKHILQVYQKTHPR 300 >UniRef50_D2BHG9 Site-specific recombinase n=5 Tax=Dehalococcoides RepID=D2BHG9_DEHSV Length = 307 Score = 233 bits (595), Expect = 4e-60, Method: Composition-based stats. Identities = 43/239 (17%), Positives = 79/239 (33%), Gaps = 24/239 (10%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALL-----FYMPDQRH 62 ++ + G+ P +L EVS LL R Sbjct: 74 LSAVRSFYRYLMREGLIQKNPTLNASSPRLDKRLPEFLTTAEVSKLLRMPDSSTPQGLRD 133 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 L+ +G+R+ E L E+ DL + V G+ K+ R+V + Sbjct: 134 KAFMELLYASGLRVSELVKLDIENLDLHSHQIRVW----------GKGSKE--RIVLMGL 181 Query: 123 ISYVRQMESWMITTRP----RRREPLWAVTDETMRNWLKQAVRRAEADG--VHFSIPVTP 176 + ++ +++++ RP +R P + R + R + V P Sbjct: 182 PA-IQSIQTYLNLGRPLLKGKRNTPALFLNPNGGRLSARSFQERLDKLAHQAGIEKHVHP 240 Query: 177 HTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDA 235 H RH++ H+L +V+Q L GH + + ++YT V Sbjct: 241 HMLRHTFATHLLDGGADLRVVQELLGHSNLSTTQIYTHVTKSQARKVYMSSHPLAKPQN 299 >UniRef50_Q93C64 Tyrosine recombinase xerD n=50 Tax=Bacilli RepID=XERD_LACCA Length = 293 Score = 233 bits (594), Expect = 5e-60, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 88/235 (37%), Gaps = 24/235 (10%) Query: 7 LQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQR 61 + ++ + + G + ++ PA L E+ AL+ R Sbjct: 71 MISALRKFYRFLLREGAIKSDPMTKIDTPKKAQHLPATLSGTEIDALMAKPDTTKPLGLR 130 Query: 62 HHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLT 121 +F ++ TG+R+ E L + L V G+ K+ RLVP++ Sbjct: 131 DRAIFELMYATGLRVSEVVGLRLDQLHLAMNLLQV----------TGKGDKE--RLVPIS 178 Query: 122 DISYVRQMESWMITTRPRR---REPLWAVTDETMRNWLKQAVRR---AEADGVHFSIPVT 175 + + ++ +RPR ++P + +Q + + A V VT Sbjct: 179 PQA-ADWVNRYLQESRPRLIKHQQPKAVFVNFHGHALTRQVIWKNLKAYIASVGIEKDVT 237 Query: 176 PHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 PHT RHS+ +L + +V+Q L GH D + ++YT + + A Sbjct: 238 PHTLRHSFATRLLENGADLRVVQELLGHSDISTTQIYTHLSNQHLVAVYHKTHPR 292 >UniRef50_P46352 Tyrosine recombinase xerD n=98 Tax=Bacteria RepID=XERD_BACSU Length = 296 Score = 232 bits (592), Expect = 8e-60, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 75/240 (31%), Gaps = 34/240 (14%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRH 62 S + V + A P L EV LL R Sbjct: 75 LASIRSFHQFLLREKVTDKDPSVHIETQKTERALPKVLALNEVERLLDTPKLTSPFGYRD 134 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 + L+ TG+R+ E L L S G+ K+ R+VP+ + Sbjct: 135 KAMLELLYATGIRVSEMIELKTADVHL----------SMGFIRCFGKGRKE--RIVPIGE 182 Query: 123 ISYVRQMESWMITTRPRR-----------REPLWAVTDETMRNWLKQAVRRAEADGVHFS 171 + +E +M R + ++ + LK+ A Sbjct: 183 -AAASAIEEYMTKARGKLLKNNVSDALFLNHHGKQISRQGFWKNLKKIALEA-----GIK 236 Query: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 +TPHT RHS+ H+L + + +Q + GH D + ++YT V + Sbjct: 237 KELTPHTLRHSFATHLLENGADLRAVQEMLGHADISTTQIYTHVTKTRLKDVYKQFHPRA 296 >UniRef50_Q3AB72 Tyrosine recombinase XerC n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AB72_CARHZ Length = 297 Score = 231 bits (591), Expect = 1e-59, Method: Composition-based stats. Identities = 48/242 (19%), Positives = 84/242 (34%), Gaps = 32/242 (13%) Query: 10 SPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLF-----YMPDQRHHM 64 + G + P L EV ++ R+ Sbjct: 73 ALRSFYRFLKRCGFIKENPALSLEIPKIPKTLPEVLTVDEVFKVIEGQENSTPTGLRNRA 132 Query: 65 LFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDIS 124 L + G+RIGE LT DL ++ G+ R+VPL + Sbjct: 133 LLELFYGAGLRIGEIAGLTLNDLDL----------TQGYVRVTGKGR--RQRIVPLGKYA 180 Query: 125 YVRQMESWMITTRPR---RREPLWA------VTDETMRNWLKQAVRRAEADGVHFSIPVT 175 + ++ ++ RP + E L+ +T +R + Q V++A + +T Sbjct: 181 -LDSLKLYLEAGRPAFKPKSEKLFLNQQGAGLTVRGIRYLISQIVKKA-----GLNRKIT 234 Query: 176 PHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDA 235 PHTFRHSY H+L + +Q L GH+ + E+YT + + + Sbjct: 235 PHTFRHSYATHLLEGGADIRAVQELLGHKRLSTTEIYTHLSKERLREVYLRTHPRSREEK 294 Query: 236 AE 237 + Sbjct: 295 ND 296 >UniRef50_B5YF74 Tyrosine recombinase XerD n=2 Tax=Dictyoglomus RepID=B5YF74_DICT6 Length = 296 Score = 231 bits (591), Expect = 1e-59, Method: Composition-based stats. Identities = 46/216 (21%), Positives = 86/216 (39%), Gaps = 32/216 (14%) Query: 35 ATSTGATPAYLLAPEVSALLF-----YMPDQRHHMLFATLWNTGMRIGEARMLTPESFDL 89 P L E+ + L R+ + T + TG+R+ E L ++ DL Sbjct: 99 PKIPMYLPEVLDPKEIESFLKIPDPLSPLGIRNMAILETFYATGIRVSELVNLNIQNVDL 158 Query: 90 DGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR---PRRREPLW- 145 + EK G+ K+ R+VPL D + V ++ ++ P+ +E L+ Sbjct: 159 E----------EKYVRCFGKGEKE--RIVPLGDYA-VESLKRYLSVRHLFNPKDKEALFL 205 Query: 146 -----AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQAL 200 +T + + +K + V+PHTFRHS+ H+L + +++Q L Sbjct: 206 NKKGERITRQGVWFIIKAYSKIL-----GLPKKVSPHTFRHSFATHLLSNGADIRIVQEL 260 Query: 201 AGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAA 236 GH D + ++YT + + + R+ Sbjct: 261 LGHSDIATTQIYTHIVSSKLHEVYQRAHPLMRRNTK 296 >UniRef50_C3RQN8 Site-specific tyrosine recombinase xerD n=3 Tax=Bacteria RepID=C3RQN8_9MOLU Length = 302 Score = 231 bits (590), Expect = 1e-59, Method: Composition-based stats. Identities = 43/246 (17%), Positives = 88/246 (35%), Gaps = 31/246 (12%) Query: 2 NNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP--- 58 N++ S + + + + +S + P L E+ +L + Sbjct: 70 NSISRKLVSLRMLYIFLVKENIVKENLMSSFTLPKRDKKLPIILSQEEMIEILDGIIVCD 129 Query: 59 --DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVR 116 R+ + L+ TGMRI E LT + ++ V G+ K+ R Sbjct: 130 AISSRNRCMVELLYATGMRISELLNLTLKDLNIKMGFIKVI----------GKGNKE--R 177 Query: 117 LVPLTDIS---YVRQMESWMITTRPRRREPLWA------VTDETMRNWLKQAVRRAEADG 167 ++P+ + + + + L+ ++ E + L+ V + Sbjct: 178 MIPIGSYVGEILEQYINDYRAEFNIKNDSLLFFNKHGQRLSREEFYSILQTIV-----NS 232 Query: 168 VHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVP 227 + V+PHTFRH++ H+L + + IQ L GH D + +YT + + + Sbjct: 233 TSITKKVSPHTFRHTFATHLLENGADLRSIQELLGHSDISTTTIYTHISNQKIRSEYQQF 292 Query: 228 FTGDGR 233 + Sbjct: 293 HPRIKK 298 >UniRef50_A1HN49 Tyrosine recombinase XerC n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HN49_9FIRM Length = 302 Score = 231 bits (589), Expect = 2e-59, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 83/240 (34%), Gaps = 36/240 (15%) Query: 10 SPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD----QRHHML 65 + G+ L P +L EV+ LL D +R + Sbjct: 81 ALRSFYRFLCREGLVDTNPFKLVHTPKIEKKLPVFLDEREVAELLELPADDVLGRRDAAI 140 Query: 66 FATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISY 125 L+ TG+R+ E L DL V G+ K+ R+VP+ + Sbjct: 141 LELLYATGIRVAELTGLKTSDVDLVSRFVIVC----------GKGAKE--RIVPIGRTAA 188 Query: 126 VRQMESWMITTRPRR--------------REPLWAVTDETMRNWLKQAVRRAEADGVHFS 171 +E ++ RPR +TD ++R + + + + Sbjct: 189 A-ALERYLADARPRLYSKWRKEQHQFLFINSKGGPLTDRSVRRIIDKYIANLA-----VA 242 Query: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 V+PHT RH++ HML + + +Q + GH + + ++YT V + A Sbjct: 243 KKVSPHTIRHTFATHMLNNGADLRSVQEMLGHVNLSTTQLYTHVTKERLKAVYRETHPRA 302 >UniRef50_A9NG15 Site-specific tyrosine recombinase n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NG15_ACHLI Length = 301 Score = 230 bits (588), Expect = 2e-59, Method: Composition-based stats. Identities = 36/240 (15%), Positives = 86/240 (35%), Gaps = 24/240 (10%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRH 62 S + + P L EV ++L + R+ Sbjct: 75 LTSIKSFHKFLLMEKEVDEDVTHKIARPKIEKTLPTVLSVDEVISILEVIDKSTTLGLRN 134 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 L ++ +G+R+ E + + + V G+ K+ R+VP++D Sbjct: 135 MALLELIYGSGLRVSELLNIKLKDIHMQQSYVIV----------TGKGSKE--RMVPISD 182 Query: 123 ISYVRQMESWMITTRP---RRREPLWAVTDET---MRNWLKQAVRRAEADGVHFSIPVTP 176 ++ + + ++++ R + + + ++ R + +++ ++ V+P Sbjct: 183 MAII-AIRNYLVKARDDLIKEKTDYLFINNQGKTLSRVGFFKVLKKLASEANLDPEKVSP 241 Query: 177 HTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAA 236 HT RHS+ H+L + + +Q L GH D + ++YT + + + Sbjct: 242 HTLRHSFATHLLENGMDLRSLQNLLGHEDISTTQIYTHISQSRLKQVYNKTHPRAKENNK 301 >UniRef50_C7N4T8 Tyrosine recombinase XerD n=7 Tax=Coriobacteriaceae RepID=C7N4T8_SLAHD Length = 309 Score = 230 bits (588), Expect = 3e-59, Method: Composition-based stats. Identities = 44/239 (18%), Positives = 75/239 (31%), Gaps = 24/239 (10%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYM-----PDQRH 62 ++ + + GV L + P L EV+ LL R Sbjct: 84 LSALKGFHRFLVGEGVTKGNPADLVSLPKVPDRLPDVLSVSEVNELLDQPFKDGPLGLRD 143 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 L+ G+R E L +E + G+ ++ R+VP+ Sbjct: 144 QAALELLYGCGLRASELISLDLGDVFF----------AEGILRVMGKGSRE--RIVPIGG 191 Query: 123 ISYVRQMESWMITTRPRRREP-----LWAVTDETMRNWLKQAVRRAEADGVHFSIP-VTP 176 + R + ++ RP+ +P + R + G P + P Sbjct: 192 SA-QRVLLDYLENGRPKLAKPSKTDGAVILNARGGRLSRQALHTIVRTAGATIGRPDLHP 250 Query: 177 HTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDA 235 HT RHS+ HML + IQ + GH D + ++Y V + A Sbjct: 251 HTLRHSFATHMLEGGADLRTIQEILGHSDISTTQIYVHVDRSHIREEYLAAHPRAHLKA 309 >UniRef50_Q04F60 Tyrosine recombinase XerD subunit n=9 Tax=Lactobacillales RepID=Q04F60_OENOB Length = 302 Score = 230 bits (587), Expect = 4e-59, Method: Composition-based stats. Identities = 43/243 (17%), Positives = 85/243 (34%), Gaps = 26/243 (10%) Query: 2 NNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP--- 58 N+++ + +S + + P L A E+ A+L Sbjct: 74 NSIVHMVSSLRKFFAYLSDDQQIQIDPMLKVTTPKKNSHLPQVLTATEIEAVLAVPDIST 133 Query: 59 --DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVR 116 R+ L T++ TG R+ E L + + G+ K R Sbjct: 134 TLGLRNRALLETMYATGFRVSEICNLKLADLHDE----------LGLITTIGKGQKQ--R 181 Query: 117 LVPLTDISYVRQMESWMITTRP----RRREPLWAVTD---ETMRNWLKQAVRRAEADGVH 169 +VP+ ++S + + + +RP + P + D R + + V+ Sbjct: 182 IVPIGEMSLL-YISKYFKESRPILLKDKESPYLFLNDHGHRISRQGIFKLVKEIAI-KAG 239 Query: 170 FSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFT 229 ++PHT RHS+ ++L + +++Q L GH D + ++YT V + Sbjct: 240 IDKDISPHTLRHSFATNLLENGADLRIVQELLGHSDISTTQIYTHVSQKHIREQYNRFHP 299 Query: 230 GDG 232 Sbjct: 300 RAK 302 >UniRef50_UPI0001C4241D integrase/recombinase n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C4241D Length = 321 Score = 229 bits (585), Expect = 6e-59, Method: Composition-based stats. Identities = 47/216 (21%), Positives = 78/216 (36%), Gaps = 36/216 (16%) Query: 34 MATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESFD 88 + P++L E+ L D+R + L+ TGMR+GE L D Sbjct: 124 LPKQASKLPSFLYEEEMDELFKAFEGNTPLDKRDRAILELLYATGMRVGECSQLDVADID 183 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR-------PRRR 141 L FV +G+ K+ R VP+ + + ++ R Sbjct: 184 LRIGTAFV----------KGKGNKE--RYVPIGSFAC-DALHEYIEDARVNLLKKGNSET 230 Query: 142 EPLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRK 195 + L+ +TD ++R L + V A + PH RHS+ H+L + + Sbjct: 231 KRLFLNYRGGPLTDRSIRRMLAKRVEEASMQ-----KHIRPHDLRHSFATHLLNNGADLR 285 Query: 196 VIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 V+Q L GH + +VYT V + Sbjct: 286 VVQELLGHEHLSTTQVYTHVTKDRLREVYKNHHPRA 321 >UniRef50_B1GYP8 Tyrosine recombinase XerD n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYP8_UNCTG Length = 294 Score = 229 bits (585), Expect = 6e-59, Method: Composition-based stats. Identities = 39/238 (16%), Positives = 80/238 (33%), Gaps = 23/238 (9%) Query: 2 NNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-- 59 ++ + S + + + P L EV LL + D Sbjct: 70 RSIFRVIESLRQFYKFLNSEDLAKNNPTLYLATPNLPENLPDILTFDEVDLLLNSINDDD 129 Query: 60 ---QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVR 116 R+ + L+ G+R+ E L +L+ + G+ K+ R Sbjct: 130 EMHIRNKAMLELLYAAGLRVSELINLKFSDINLEDCFLRII----------GKGSKE--R 177 Query: 117 LVPLTDISYVRQMESWMITTRP----RRREPLWAVTDETMRNWLKQAVRRAEADGVHFSI 172 LVP + + + ++ RP + + + R + ++ + V + Sbjct: 178 LVPFGNKAKF-FISIYLKKRRPCLNVNDHIFISRLGKKLSRIEFWRQLKNIAKN-VGINK 235 Query: 173 PVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 +TPHT RHS+ H+L + +Q + GH + ++YT + + Sbjct: 236 NITPHTLRHSFASHLLKGGADIRFVQEMLGHASITTTQIYTHLDEDRIVQQHKKFHPR 293 >UniRef50_D2NUA7 Site-specific recombinase XerD n=3 Tax=Actinomycetales RepID=D2NUA7_9MICC Length = 437 Score = 229 bits (584), Expect = 8e-59, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 78/225 (34%), Gaps = 18/225 (8%) Query: 25 FATALSLRRMATSTGATPAYLLAPEVSALL-----FYMPDQRHHMLFATLWNTGMRIGEA 79 + + P + ++ LL R+ + L+ TG R+ E Sbjct: 215 PTDPAAPVTPPKNVKRLPKAVSVEDIQRLLAVPDRETATGLRNRAILEFLYATGARVSEM 274 Query: 80 RMLTPESFDLDGV---RPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITT 136 + +G +I G+ K+ RLVP+ + + ++ +++ Sbjct: 275 LNADIDDVHFEGTLTDEDGNQITLPGYVRLFGKGNKE--RLVPIGSYA-QKAIQDYLVRA 331 Query: 137 RP-----RRREPLWAVTDETMRNWLKQA--VRRAEADGVHFSIPVTPHTFRHSYIMHMLY 189 RP + V R + A + + A+ S +PH+ RHS+ H+L Sbjct: 332 RPSLVAHGKGTAALFVNGRGGRLGRQGAWLILKEAAEAAGLSSDFSPHSMRHSFATHLLQ 391 Query: 190 HRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 +V+Q L GH + +VYT+V + + Sbjct: 392 GGADIRVVQELLGHASIATTQVYTKVTPEGLMEVYRMAHPRAHER 436 >UniRef50_B5YFZ8 Tyrosine recombinase xerC n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=XERC_THEYD Length = 301 Score = 229 bits (584), Expect = 8e-59, Method: Composition-based stats. Identities = 40/224 (17%), Positives = 78/224 (34%), Gaps = 29/224 (12%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYMPD-----QRHHMLFATLWNTGMRIGEARM 81 + A P +L + L+ + QR + +++G+R+ E Sbjct: 92 NPARVVSSVKIKRALPKFLTVDDAFKLVEAPSEDKFTVQRDKAILELFYSSGIRVSELCG 151 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITT----- 136 L E DL E + RG+ K+ R+VP+ + ++ ++ Sbjct: 152 LNLEDLDL----------KEGLIKVRGKGKKE--RIVPVGQKAK-EALKKYLAIRQILRI 198 Query: 137 --RPRRREPLWAVTDETMR---NWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHR 191 + E + + R +++ V + + + PHT RH++ H+L Sbjct: 199 KKKLSLDETPLFINNRGQRISDRQVRRIVEKYAKF-IGVLEKIGPHTLRHTFASHLLMEG 257 Query: 192 QPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDA 235 +VIQ L GH + ++YT V + D Sbjct: 258 ADLRVIQELLGHASLSTTQIYTHVDLKHLIEVYDKSHPLSKEDE 301 >UniRef50_C0VHG1 Site-specific tyrosine recombinase n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VHG1_9GAMM Length = 306 Score = 228 bits (583), Expect = 9e-59, Method: Composition-based stats. Identities = 48/234 (20%), Positives = 84/234 (35%), Gaps = 25/234 (10%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRH 62 ++ + + ++ A P L +V AL+ R Sbjct: 86 LSALRQFYKFLREQKLREDNPVASHHSPKIGRALPKDLSEQDVEALINAPDISTTLGLRD 145 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 +F L+ G+R+ E L E +L + G+ K+ RLVPL Sbjct: 146 RAMFEVLYACGLRVSELLNLRLELINL----------KQGFVRITGKGNKE--RLVPLGQ 193 Query: 123 ISYVRQMESWMITTRP---RRREPLWAVTDETM---RNWLKQAVRRAEADGVHFSIPVTP 176 + +E ++ +RP + +T R A++R + ++P Sbjct: 194 YAC-DWIEKYLAESRPQLYKSNTDYLFLTQHGGIMSRQNFWYAIKRYALQA-NIQAELSP 251 Query: 177 HTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 HT RH++ H+L H +V+Q L GH D + ++YT V M A Sbjct: 252 HTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQHRMQALHHQYHPR 305 >UniRef50_A3DD82 Tyrosine recombinase XerD subunit n=13 Tax=Firmicutes RepID=A3DD82_CLOTH Length = 296 Score = 228 bits (583), Expect = 1e-58, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 81/240 (33%), Gaps = 35/240 (14%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRH 62 S G+ P L EV LL R Sbjct: 76 LASIRSFYQYLTKKGIISQDPTENLESPKVEKKLPQILSTKEVELLLEQPKCDDLKGYRD 135 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 + L+ TG+R+ E L + +L+ R + ++ R+VP+ Sbjct: 136 KAMLELLYATGIRVSELISLDLDDVNLEMQYI-----------RCNKGARE--RIVPIGS 182 Query: 123 ISYVRQMESWMITTR----PRRREPLWA-------VTDETMRNWLKQAVRRAEADGVHFS 171 +S V ++ ++ +R R E +T + +KQ +A+ + Sbjct: 183 VS-VNALQEYLTKSRNLLIQRPDEKALFVNVNGKRLTRQGFWKIIKQYKNQAK-----IN 236 Query: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 +TPHT RHS+ H+L + + IQ + GH D S ++Y ++ + Sbjct: 237 KDITPHTLRHSFAAHLLENGADLRSIQEMLGHSDISSTQIYAQLAKNRIKEIYKKTHPRA 296 >UniRef50_Q1Q4J1 Similar to site-specific recombinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q4J1_9BACT Length = 295 Score = 228 bits (582), Expect = 1e-58, Method: Composition-based stats. Identities = 40/242 (16%), Positives = 84/242 (34%), Gaps = 24/242 (9%) Query: 1 MNNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-- 58 +N++ S I G L P + ++ LL Sbjct: 67 VNSINRAIVSIRMFYKFLILEGKLQKNPLVSLDSPKLWKKLPYVVPIHKIEDLLSAADVK 126 Query: 59 ---DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEV 115 R+ + L+ TG R+ E ++ +L+ +G+ K+ Sbjct: 127 TKLGIRNKAILELLYATGARVSEVATISLNGINLEY----------GYIKCKGKGSKE-- 174 Query: 116 RLVPLTDISYVRQMESWMITTRPR----RREPLWAVTD--ETMRNWLKQAVRRAEADGVH 169 R+VPL + + ++ ++ T RP+ + ++ +R + + A Sbjct: 175 RIVPLGKKASI-AIQEYLTTVRPQIKDSQNSHYLFLSRTGRPLRRENIWLIVKNCALKAG 233 Query: 170 FSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFT 229 + ++PH RHS+ H+L + + +Q + GH + ++YT V + A Sbjct: 234 ITEAISPHKLRHSFATHLLENGADLRAVQEMLGHVSISTTQIYTHVNKQHLKAIHQKFHP 293 Query: 230 GD 231 Sbjct: 294 RA 295 >UniRef50_B3E1H7 Tyrosine recombinase xerC n=8 Tax=Desulfuromonadales RepID=XERC_GEOLS Length = 317 Score = 228 bits (581), Expect = 2e-58, Method: Composition-based stats. Identities = 34/217 (15%), Positives = 68/217 (31%), Gaps = 23/217 (10%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ--------RHHMLFATLWNTGMRIGE 78 L P +L + L+ R + L+++G+R+ E Sbjct: 105 NPAELIATPKREQRLPFHLNIDQTVTLIEAPGHTGQEQPTFARDTAILELLYSSGLRVSE 164 Query: 79 ARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP 138 L D + + +G+ K+ R+VP+ + + +E ++ Sbjct: 165 LTGLAVADLD----------RAAGMVRVQGKGGKE--RIVPVGS-AALEALEQYLAGRGQ 211 Query: 139 RRREPLWAVTDETMRNWLKQAVRRAEADGVHFS--IPVTPHTFRHSYIMHMLYHRQPRKV 196 + + R + + + ++PHT RH++ HML + Sbjct: 212 LADDAPLFLGCRGARINRRTVAQLVKRWASGIPAFRSISPHTLRHTFATHMLEGGADLRS 271 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGR 233 IQ L GH + + YT V + Sbjct: 272 IQELLGHSSLSTTQKYTHVGLDRLLEVYDKAHPRARE 308 >UniRef50_UPI0001C41B06 tyrosine recombinase XerC n=1 Tax=Methanobrevibacter ruminantium M1 RepID=UPI0001C41B06 Length = 326 Score = 227 bits (580), Expect = 2e-58, Method: Composition-based stats. Identities = 47/211 (22%), Positives = 80/211 (37%), Gaps = 25/211 (11%) Query: 29 LSLRRMATSTGATPAYLLAPEVSALLFYMP------------DQRHHMLFATLWNTGMRI 76 L + T + P L EV +L+ + R ++ L++TG+RI Sbjct: 127 LEDVQNPKRTKSLPKSLTEKEVKSLIDAVQITDEDSELKKKAKMRDKVILEFLYSTGLRI 186 Query: 77 GEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITT 136 E L + D D VR G+ KD R+V L D + +++++ T Sbjct: 187 SELVKLQKKDIDFDERTIRVR----------GKGEKD--RIV-LFDENTRDLIDNYIETQ 233 Query: 137 RPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 + + Q + + A+ VTPH RHS+ H+L + +V Sbjct: 234 NQKSEYLFINKNGRKLTPRYVQMMIKEYAEKAGIKKKVTPHVLRHSFATHLLKNGVDIRV 293 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATLAVP 227 IQ L GH + ++YT V + + Sbjct: 294 IQQLLGHSSLSTTQIYTNVDMDTIKSVYDHA 324 >UniRef50_B0TH94 Tyrosine recombinase xerc, putative n=1 Tax=Heliobacterium modesticaldum Ice1 RepID=B0TH94_HELMI Length = 340 Score = 227 bits (580), Expect = 2e-58, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 79/231 (34%), Gaps = 28/231 (12%) Query: 16 LLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-------DQRHHMLFAT 68 + G + + + P L EVS LL R+ + Sbjct: 123 RYLVREGQLTSHPMKRLKSPKLGRPLPKTLSESEVSCLLSAAERRGDEPLALRNLAMVEL 182 Query: 69 LWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQ 128 + +G+R+ E L S D G+ K+ R+VP+ + + + Sbjct: 183 FYASGLRVAELCGLDLGSVD----------AGLGYVRVLGKGGKE--RIVPVGEQA-LEA 229 Query: 129 MESWMITTRP------RRREPLWAVTDETMRNWLK--QAVRRAEADGVHFSIPVTPHTFR 180 + ++ RP R P + R ++ Q + ADG ++PHT R Sbjct: 230 ISRYLKQGRPALARRQREVSPALFLNHRGRRLSVRGAQDILSRIADGAALERGISPHTLR 289 Query: 181 HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 H++ H+L + +Q + GH + ++YT V A + Sbjct: 290 HTFATHLLDGGADLRSVQEMLGHAKLSTTQIYTHVSAERLKEIYHKTHPRA 340 >UniRef50_Q72SA5 Tyrosine recombinase xerD n=6 Tax=Leptospira RepID=XERD_LEPIC Length = 298 Score = 227 bits (580), Expect = 2e-58, Method: Composition-based stats. Identities = 49/239 (20%), Positives = 85/239 (35%), Gaps = 34/239 (14%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-----QRH 62 + + + P YL E+ L + + R Sbjct: 77 VVAIRQFYKFLKDEKKLDTNPTEKIETPEVMRSIPDYLTQDEIEELFASIKEDNLYELRD 136 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 +F L+++G+RI EA L DL+G+ V G+ RLVP + Sbjct: 137 KCIFELLYSSGLRISEACNLRLNDMDLEGMTLTV----------EGKGG--RQRLVPFGE 184 Query: 123 ISYVRQMESWMITTRP-----RRREPLWA------VTDETMRNWLKQAVRRAEADGVHFS 171 S + + ++ +RP R E L+ + +++ L ++R Sbjct: 185 KS-LDILNRYLKQSRPFILKSRNCEYLFVSKKGSYINRKSVWRLLNHYIKR-----TSIL 238 Query: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 VTPHT RHS+ H+L + K +Q L GH D + ++YT + + Sbjct: 239 KKVTPHTLRHSFATHLLENHADLKSVQELLGHIDIATTQIYTHMANKTLREVHKKFHPR 297 >UniRef50_B5YGX8 Tyrosine recombinase XerD n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGX8_THEYD Length = 294 Score = 227 bits (580), Expect = 2e-58, Method: Composition-based stats. Identities = 41/241 (17%), Positives = 88/241 (36%), Gaps = 27/241 (11%) Query: 3 NVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD--- 59 ++ + +S ++ I + + P L EV LL M + Sbjct: 70 SIARILSSLKQFFRFMIFDSIINHDPTEGLKSPKLWLRLPKALEIDEVKRLLSVMLESKY 129 Query: 60 -QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLV 118 R + ++ +G+R+ E L + + V +G+ K+ R+V Sbjct: 130 YLRDIAMLELMYASGLRVSELVRLKLSDINFEAGFIRV----------KGKGDKE--RVV 177 Query: 119 PLTDISYVRQMESWMITTRP----RRREPLWAVTDET---MRNWLKQAVRRAEADGVHFS 171 P+ S + +++++++ RP ++ + + R Q ++ Sbjct: 178 PIAQRS-IDKIKNYLVKLRPVLLKKKASEYVFLNNRGQPMTRQRFWQNIKAIGRIA---G 233 Query: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 + VTPH RHS+ H+L + +Q + GH D + ++YT+V + Sbjct: 234 VNVTPHMIRHSFATHLLEGGADLRSLQKMLGHSDISTTQIYTKVSMDRLRKEYLKHHPRA 293 Query: 232 G 232 Sbjct: 294 K 294 >UniRef50_Q3IDS2 Site-specific recombinase n=3 Tax=Alteromonadales RepID=Q3IDS2_PSEHT Length = 315 Score = 227 bits (580), Expect = 2e-58, Method: Composition-based stats. Identities = 41/218 (18%), Positives = 78/218 (35%), Gaps = 21/218 (9%) Query: 25 FATALSLRRMATSTGATPAYLLAPEVSALLFYMPD----QRHHMLFATLWNTGMRIGEAR 80 + + P L +++ LL D R + ++++G+RI E Sbjct: 109 YHNPAVGIKGPKFAKPLPKNLDVDQMARLLEIPDDEPLAIRDKAMMELMYSSGLRISELV 168 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP-- 138 + VR G+ K+ RL+P+ + + ++ W+I Sbjct: 169 GANLQDISAANGEILVR----------GKGNKE--RLIPVGSKA-LNALKKWLIIRPQFA 215 Query: 139 RRREPLWAVTDETMRNWLKQAVRRAEADGV--HFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 E ++ + R ++Q R + G+ S V PH RHS+ H+L + Sbjct: 216 NPDEVAVFLSSKKNRISVRQVRLRMQEWGIKQGISSQVHPHKLRHSFASHILESSGDLRA 275 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 +Q L GH + +VYT + +A + Sbjct: 276 VQELLGHSSLSATQVYTHLDFQHLAKVYDNTHPRAKKR 313 >UniRef50_Q01SN8 Tyrosine recombinase XerD subunit n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01SN8_SOLUE Length = 302 Score = 227 bits (579), Expect = 3e-58, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 76/218 (34%), Gaps = 26/218 (11%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEAR 80 R P YL E+ ++ R + L+ +G+R+ E Sbjct: 99 TDPTEHLRTPRQWQTIPKYLNLEEIERIIQAPDLAKPLGLRDRAMMEVLYASGLRVSELC 158 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR- 139 L DL+ +V G+ K RLVP+ + + + +++ + RP Sbjct: 159 KLGIGDLDLEY----------QVLRTTGKGNKQ--RLVPVGKAAVL-AVRAYLESGRPGL 205 Query: 140 ---RREPLWAVTDETM---RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQP 193 R VT R + + A +TPH RHS+ H+L Sbjct: 206 LKGRASRYLFVTARGGCMTRQGFWKLL-AAYGRKAGIFHGLTPHVLRHSFATHLLEGGAD 264 Query: 194 RKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 + +Q + GH D + ++YT V + AT+ Sbjct: 265 LRSVQVMLGHADISTTQIYTHVMRSRLRATVEKHHPRA 302 >UniRef50_C0QJ38 Site-specific recombinase XerD (DNA replication, recombination and repair) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QJ38_DESAH Length = 297 Score = 227 bits (579), Expect = 3e-58, Method: Composition-based stats. Identities = 43/209 (20%), Positives = 74/209 (35%), Gaps = 18/209 (8%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARM 81 + P +L E+ LL + D+R+ +F ++TGMR+ E Sbjct: 101 NPAQGVSAPKLPRSIPQFLTVDELFTLLDSIKTRTVVDKRNRAVFELFYSTGMRVSELSN 160 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRR 141 L D + VR G+ ++ RLVP+ D + ++ ++ + Sbjct: 161 LNVGDIDRESHLVRVR----------GKGNRE--RLVPVGDRA-LKAVDDYRTCIDGEFG 207 Query: 142 EPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALA 201 + + V +PV+PHT RHS+ HML + IQ + Sbjct: 208 ALFLNRDAHRFSDSSIRRVLSVLVKACGLGVPVSPHTLRHSFATHMLDAGADLRGIQEIL 267 Query: 202 GHRDPRSMEVYTRVFALDMAATLAVPFTG 230 GH S ++YT V + Sbjct: 268 GHASLSSTQIYTHVTYARLMEVYDRAHPR 296 >UniRef50_A8FD78 Tyrosine recombinase xerC n=89 Tax=Bacillaceae RepID=XERC_BACP2 Length = 305 Score = 226 bits (578), Expect = 3e-58, Method: Composition-based stats. Identities = 44/247 (17%), Positives = 84/247 (34%), Gaps = 37/247 (14%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALL-----FYMPDQRH 62 ++ + + L + P++L E+ L QR+ Sbjct: 77 VSALRSFYKFLLREQLVKENPFLLVSLPKQDKRIPSFLYEEELKELFTVSDVSTPLGQRN 136 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 + L+ TGMR+ E L DL V G+ K R VP Sbjct: 137 QAILELLYATGMRVSELCSLKESDLDLSMDTVLV----------HGKGSKQ--RYVPFGS 184 Query: 123 ISYVRQMESWMITTRPRRREPLW--------------AVTDETMRNWLKQAVRRAEADGV 168 ++ + +++ R + + +TD +R L + +++A Sbjct: 185 YAH-EALITYLEDGRLKLKAKGKDRADAYVFLNQRGAPLTDRGVRFILTELMKKASG--- 240 Query: 169 HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPF 228 ++ + PH RH++ H+L + +Q L GH + S +VYT V + T Sbjct: 241 --TLHIHPHMLRHTFATHLLNEGADLRSVQELLGHSNLSSTQVYTHVSKDSLRKTYMSHH 298 Query: 229 TGDGRDA 235 + + Sbjct: 299 PRAFKRS 305 >UniRef50_B7VJ63 Tyrosine recombinase xerD n=5 Tax=Vibrionales RepID=B7VJ63_VIBSL Length = 320 Score = 226 bits (578), Expect = 3e-58, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 90/245 (36%), Gaps = 33/245 (13%) Query: 3 NVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP---- 58 + + ++ R+ V +L P L +V +LL Sbjct: 93 SRARMLSAIRRLFQYLHREKVRADDPSALLISPKLPKRLPKDLSEEQVDSLLEAPDPNDP 152 Query: 59 -DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRL 117 + R + L+ TG+R+ E LT E+ L + V G+ K+ RL Sbjct: 153 IELRDKAMLELLYATGLRVTELVSLTMENISL----------RQGVVRVIGKGGKE--RL 200 Query: 118 VPLTDISYVRQMESWMITTRPR-----------RREPLWAVTDETMRNWLKQAVRRAEAD 166 VP+ + + V +E+++ RP+ + +T +T +K A D Sbjct: 201 VPMGENA-VDWIETFIEQGRPQLLGDNSSDVVFPSKRAKQMTRQTFWYRIKHYSVIAGID 259 Query: 167 GVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAV 226 +PH RH++ H+L + +V+Q L GH D + ++YT V + A Sbjct: 260 TELL----SPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHAQ 315 Query: 227 PFTGD 231 Sbjct: 316 HHPRA 320 >UniRef50_C4LIF6 Integrase/recombinase n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LIF6_CORK4 Length = 326 Score = 226 bits (577), Expect = 5e-58, Method: Composition-based stats. Identities = 58/238 (24%), Positives = 94/238 (39%), Gaps = 31/238 (13%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP--------D 59 S R S D A +++ R S + P L +V+ L+ P Sbjct: 106 VRSLHRFSHEEGQLARDVAAGVTVLR---SGQSLPHALTVEQVNRLIEACPVNESSNPIA 162 Query: 60 QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVP 119 R + L+ TGMRI EA L +S D + V G+ K+ RLVP Sbjct: 163 LRDRAVIELLYGTGMRISEALNLDIDSIDRNHAYVRVV----------GKGRKE--RLVP 210 Query: 120 LTDISYVRQMESWMITTRP---RRREPLWAVTDETMRNWLKQAVRR---AEADGVHFSIP 173 + + + +++W++ RP +R + + R +Q+V + A A+ Sbjct: 211 IGAPA-LHAIDAWLVRGRPSMVKRSDKALFLNARGNRLG-RQSVWKFLHAAAERCGLGDS 268 Query: 174 VTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 V PHT RHSY H+L + +Q L GH + ++YT V ++ A Sbjct: 269 VGPHTLRHSYATHLLQGGADIRAVQELLGHASVTTTQIYTAVSIDNLREVYATSHPRA 326 >UniRef50_C1A8W1 Tyrosine recombinase XerD n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A8W1_GEMAT Length = 312 Score = 226 bits (577), Expect = 6e-58, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 78/228 (34%), Gaps = 26/228 (11%) Query: 16 LLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLW 70 + +A G+ P L EV+ LL R + + Sbjct: 99 RIMVAEGLVTTDPTERLDSPQRWRTLPEVLSVDEVTRLLAAPGLDERLAFRDRAMLELAY 158 Query: 71 NTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQME 130 G+R+ E ++ + L+ V G+ K+ RLVP+ + + + Sbjct: 159 GAGLRVSEWIGMSVKDVMLEDSLVRV----------LGKGNKE--RLVPIGRSA-IGAVA 205 Query: 131 SWMITTRP----RRREPLWAVTDETM---RNWLKQAVRRAEADGVHFSIPVTPHTFRHSY 183 ++ RP + + + R + VR+ PV+PHT RHS+ Sbjct: 206 VYLRELRPVLERGGGKGILFLNGRGAPLSRMGAWKLVRKYVGMA-GIEKPVSPHTLRHSF 264 Query: 184 IMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 H+L + +Q + GH D + ++YT V + + Sbjct: 265 ATHLLEGGADLRAVQEMLGHADIATTQIYTHVDREYLRSVHRQFHPRA 312 >UniRef50_Q0W0L4 Integrase n=2 Tax=Euryarchaeota RepID=Q0W0L4_UNCMA Length = 278 Score = 226 bits (576), Expect = 7e-58, Method: Composition-based stats. Identities = 53/230 (23%), Positives = 87/230 (37%), Gaps = 23/230 (10%) Query: 3 NVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRH 62 NV+ + S L G + P YL E++ LL D R Sbjct: 72 NVLSVLKSFYSFML---DNGYVSSNPTRGINNIKLDKKAPVYLTVSEMNDLLDTAIDTRD 128 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 ++ L+ TG+R+ E + + D D V G+ K+ + LVP Sbjct: 129 RIIVRLLYATGVRVSELVNIRKKDIDFDRCTIKV----------FGKGAKERIVLVP--- 175 Query: 123 ISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHS 182 + V++M + + L+ +T T++ +KQ RRA+ + VTPH RHS Sbjct: 176 ETVVKEMYDY--AASLSNDDRLFNLTPRTVQRDIKQLARRAK-----INKNVTPHKLRHS 228 Query: 183 YIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDG 232 + HML + IQ L GH + ++YT ++ Sbjct: 229 FATHMLQNGGNVVAIQKLLGHSSLNTTQIYTHYNVDELKEMYGRTHPLGK 278 >UniRef50_C8NEN7 Integrase/recombinase XerC n=2 Tax=Granulicatella RepID=C8NEN7_9LACT Length = 318 Score = 226 bits (576), Expect = 7e-58, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 85/230 (36%), Gaps = 36/230 (15%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEAR 80 + + P + E+ + + DQR+ L L+ TGMR+ E Sbjct: 93 SNPFASVSYKKGKMLLPEFFYEDEIEKFINSIDGNQSLDQRNKALVEVLYATGMRVSELT 152 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP-- 138 LT E DLD V G+ K+ R VP+ D + +E+++ R Sbjct: 153 NLTLEQLDLDNSIILVI----------GKGSKE--RYVPIGDFART-ALETYLEEGRKDL 199 Query: 139 ---RRREPLW--------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHM 187 R+E + +T +R L++ + ++ + PH RH++ H+ Sbjct: 200 MAKERKEHFFVFVNHLGDPLTTNGVRYILEKLI-----QESGLTLKIHPHMLRHTFATHL 254 Query: 188 LYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAE 237 L + + +Q L GH S ++YT V + + F E Sbjct: 255 LNNGADMRTVQELLGHVSLSSTQIYTHVTKEALQQNYQLYFPRSKAGKNE 304 >UniRef50_A5WBQ8 Tyrosine recombinase XerD n=6 Tax=Moraxellaceae RepID=A5WBQ8_PSYWF Length = 312 Score = 225 bits (575), Expect = 8e-58, Method: Composition-based stats. Identities = 43/243 (17%), Positives = 84/243 (34%), Gaps = 37/243 (15%) Query: 7 LQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQR 61 + +S + L + + + P L +V +LL R Sbjct: 87 MLSSLRQFYLWMVGNERREDNPCERIKTPKIGRSLPKDLSENDVESLLSAPDTSTALGLR 146 Query: 62 HHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLT 121 + L+ G+R+ E L+ E +L+ + G+ K RLVPL Sbjct: 147 DKAMLEVLYACGLRVSELMNLSLEQVNLNAGWLQI----------TGKGNK--TRLVPLG 194 Query: 122 DISYVRQMESWMITTRPRRREPLWA--------------VTDETMRNWLKQAVRRAEADG 167 + + ++ ++ R L + +T + +K+ ++A Sbjct: 195 EYAS-DALDDYLTHARGELVAHLKSGNCQAVFLTTQGGYMTRQNFWYMIKKYAKQA---- 249 Query: 168 VHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVP 227 ++PHT RH++ H+L H + +Q L GH D + ++YT V + Sbjct: 250 -GIQSDLSPHTLRHAFATHLLNHGADLRSVQLLLGHSDLSTTQIYTHVATARLQQLHEAH 308 Query: 228 FTG 230 Sbjct: 309 HPR 311 >UniRef50_C3RL48 Tyrosine recombinase xerC n=4 Tax=Bacteria RepID=C3RL48_9MOLU Length = 304 Score = 225 bits (575), Expect = 9e-58, Method: Composition-based stats. Identities = 38/224 (16%), Positives = 78/224 (34%), Gaps = 35/224 (15%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARM 81 L P +L E+ LL + R+ + ++ +G+R E Sbjct: 99 NPFLLIESQKVAKRNPDFLFPEEILGLLDSIETKDDLGIRNKAMMELMYASGLRCSEVVN 158 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR- 140 L + D + + F+ G+ KD R VP D + + ++ R Sbjct: 159 LQLSNIDFNQMVLFI----------HGKGNKD--RYVPFHDYAG-EWLIKYIQEARENLM 205 Query: 141 -----------REPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLY 189 + +T+ + N + + +R ++ + + PHT RHS+ H+L Sbjct: 206 IKNEGHNFVFVNKFGNPLTNRGVENIVDRIMRLYDS-----TKKIHPHTIRHSFATHLLN 260 Query: 190 HRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGR 233 + +Q L GH + + ++YT + + + Sbjct: 261 AGADIRTVQELLGHENLSTTQIYTHISRDHLKEVYLKAHPRNIE 304 >UniRef50_C7PUZ0 Tyrosine recombinase XerD n=2 Tax=Sphingobacteriales RepID=C7PUZ0_CHIPD Length = 316 Score = 225 bits (575), Expect = 9e-58, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 80/236 (33%), Gaps = 25/236 (10%) Query: 7 LQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFY-----MPDQR 61 + + + V L + P L E+ ++ QR Sbjct: 93 IISGIKAFYRYLALEDVVRQDPTILLEAPKTKRQLPDVLSFEEIEQIIGQIKAGTPEGQR 152 Query: 62 HHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLT 121 + + T+++ G+R+ E L D V G+ K+ RLVP+ Sbjct: 153 NRAILETMYSCGLRVSEVTNLQISQLHFDAGFIRVV----------GKGDKE--RLVPIG 200 Query: 122 DISYVRQMESWMITTR-----PRRREPLWAVTDET--MRNWLKQAVRRAEADGVHFSIPV 174 + V+ + + R + +E + + + + V + V Sbjct: 201 SDA-VKYINIYKDEVRVHVPVKKGQEDILFLNRRGSALTRVMIFLVIKELTAAAGIDKQV 259 Query: 175 TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 +PHTFRHS+ H++ + +Q + GH + E+YT + + TL Sbjct: 260 SPHTFRHSFATHLVEGGADLRAVQEMLGHESITTTEIYTHLDREYLRDTLQRFHPR 315 >UniRef50_A3M1C2 Site-specific tyrosine recombinase n=15 Tax=Moraxellaceae RepID=A3M1C2_ACIBT Length = 306 Score = 225 bits (575), Expect = 9e-58, Method: Composition-based stats. Identities = 46/234 (19%), Positives = 82/234 (35%), Gaps = 25/234 (10%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRH 62 ++ + + ++ A P L +V AL+ R Sbjct: 86 LSALRQFYKFLREQKLRSDNPVATHHSPKIGRALPKDLSEEDVEALIQAPDITTALGLRD 145 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 +F L+ G+R+ E L E +L + G+ K+ RLVPL Sbjct: 146 RAMFEVLYACGLRVSELLNLRLELINL----------KQGYLRITGKGNKE--RLVPLGQ 193 Query: 123 ISYVRQMESWMITTRP---RRREPLWAVTDETM---RNWLKQAVRRAEADGVHFSIPVTP 176 + +E ++ RP + +T R A++ + ++P Sbjct: 194 YAC-DWVERYLNEARPQLYKSSTDYLFLTQHGGIMSRQNFWYAIKHYALQA-NIQAELSP 251 Query: 177 HTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 HT RH++ H+L H +V+Q L GH D + ++YT V + M Sbjct: 252 HTLRHAFATHLLNHGADLRVVQMLLGHSDLSTTQIYTHVAQVRMQQLHEKHHPR 305 >UniRef50_C2KPQ6 Tyrosine recombinase n=2 Tax=Mobiluncus mulieris RepID=C2KPQ6_9ACTO Length = 319 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 51/220 (23%), Positives = 81/220 (36%), Gaps = 24/220 (10%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYM------PDQRHHMLFATLWNTGMRIGEA 79 A S + A P L E+ ALL R L L+ +G RI EA Sbjct: 109 ANVASSVKPAKLPRRLPETLSLEEMEALLAAASSPGDSNSLRDRALLEFLYASGARISEA 168 Query: 80 RMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR 139 L + D + VR+ G+ K+ R+ L + + ++++++ RP Sbjct: 169 MNLVLDDIDFETEPALVRLF--------GKGRKE--RISMLGHQAC-QALQAYLVRVRPT 217 Query: 140 RREPLWAVTD-------ETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQ 192 E + + M A+ +A A PV PHT RH + H+L Sbjct: 218 LAEKGQSRGRVFLNTYGKPMSRQTAWAIIQAAAKRAQIDRPVHPHTLRHCFATHLLQGGA 277 Query: 193 PRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDG 232 +V+Q L GH + E+YT+V + A Sbjct: 278 DIRVVQELLGHASVTTTEIYTKVSKQMLLEVYASAHPRAR 317 >UniRef50_B3SZY7 Putative Phage integrase family protein n=1 Tax=uncultured marine microorganism HF4000_001A02 RepID=B3SZY7_9ZZZZ Length = 298 Score = 225 bits (574), Expect = 1e-57, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 78/241 (32%), Gaps = 25/241 (10%) Query: 2 NNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALL-----FY 56 N++ +S A G L P L E+ +L Sbjct: 69 NSIKRAVSSIRTYHNFLSAEGHMKDNPAQLLDTPKIPRKLPNVLTIQEIDKILGIIPENA 128 Query: 57 MPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVR 116 QR +F +++ G+R+ E D V +G+ K R Sbjct: 129 PMAQRDLAIFEMMYSCGLRVTELCDFKTSDILWDSEMIRV----------QGKGSKQ--R 176 Query: 117 LVPLTDISYVRQMESWMITTR-------PRRREPLWAVTDETMRNWLKQAVRRAEADGVH 169 VP+ I+ +++++ R P E + + + + + + Sbjct: 177 FVPIGPIAREN-LKNYLNHERNTLADKNPNVAEVFLSRNGRKLTRMMIWVLLKKWTESAE 235 Query: 170 FSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFT 229 V+PHT RHS+ H+L + +Q + GH D + +VYT + + Sbjct: 236 VKKEVSPHTLRHSFATHLLEGGADLRSVQEMLGHTDITTTQVYTHLDKEHLKEVHRTYHP 295 Query: 230 G 230 Sbjct: 296 R 296 >UniRef50_C0QM80 Tyrosine recombinase XerD n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QM80_DESAH Length = 295 Score = 224 bits (573), Expect = 1e-57, Method: Composition-based stats. Identities = 50/245 (20%), Positives = 82/245 (33%), Gaps = 34/245 (13%) Query: 2 NNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP--- 58 + + + + L L + + P +L +V+ALL Sbjct: 68 RSRARHLIAVRGFYRFLALENLTRSNPLRLIDIPKAGTRLPRFLSQDQVTALLEMPDRTT 127 Query: 59 --DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVR 116 R+ + L+ G+R+ E L E DL G+ ++ R Sbjct: 128 HRGLRNAAMLEILYGAGLRVSELVGLKTEQVDL----------VACFVRLFGKGSRE--R 175 Query: 117 LVPLTDISYVRQMESWMITTRP-----------RRREPLWAVTDETMRNWLKQAVRRAEA 165 +VP + R ME W+ RP +T + LK+ Sbjct: 176 IVPFGSHARQRTME-WLEWGRPWMLKKNASRYLFVARAGNPMTRQGFWKLLKKYA----- 229 Query: 166 DGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLA 225 G SI V+PHT RHS+ H+L + +Q + GH D S ++YT V + Sbjct: 230 LGAGISIKVSPHTLRHSFATHLLEGGADLRSVQTMLGHADIASTQIYTHVSRQYLVDMHK 289 Query: 226 VPFTG 230 Sbjct: 290 KYHPR 294 >UniRef50_C0VWG3 Site-specific tyrosine recombinase XerD n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VWG3_9CORY Length = 360 Score = 224 bits (573), Expect = 2e-57, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 83/237 (35%), Gaps = 23/237 (9%) Query: 7 LQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-----QR 61 + ++ G+ P L E++ L+ R Sbjct: 135 MLSTIRGFHAFARDEGIVADDVAHDITPPAMPQHLPDTLSVDEINTLIESQAGDSAVALR 194 Query: 62 HHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLT 121 + L L+ TG RI E L + ++ + G+ K R+VP+ Sbjct: 195 NKALLELLYGTGARISEVLSLAVDDI-------TALEETDGILVLTGKGDKQ--RIVPVG 245 Query: 122 DISYVRQMESWMITTRP---RRREPLWAVTDETM----RNWLKQAVRRAEADGVHFSIPV 174 + + ++++++ RP + + + R Q V++A + + + Sbjct: 246 SHAR-QAVDAYLVRGRPQLNKGKSAALFLNVRGGKAMSRQSAWQVVKQAATEA-GITKDI 303 Query: 175 TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 +PHT RHS+ H+L + +Q L GH + ++YT + A + A Sbjct: 304 SPHTLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTHITADSLRAMWRTAHPRA 360 >UniRef50_UPI0001C31A82 tyrosine recombinase XerD n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31A82 Length = 320 Score = 224 bits (572), Expect = 2e-57, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 77/233 (33%), Gaps = 26/233 (11%) Query: 12 ERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-----QRHHMLF 66 + + + P L EV LL R L Sbjct: 96 RSFYRHLRREEILDRDPTAELKGPPRGKKLPKVLSRDEVQHLLSQPRGTGPAALRDRALL 155 Query: 67 ATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYV 126 ++ G+R EA + + D+D + G+ K+ RLVP+ + + Sbjct: 156 ELMYACGLRASEAVDMQLDELDVDD----------GILRANGKGNKE--RLVPIGSKA-L 202 Query: 127 RQMESWMITTRPR----RREPLWAVTDET---MRNWLKQAVRRAEADGVHFSIPVTPHTF 179 + ++ RP+ R E V R L + V+R ++PHT Sbjct: 203 DALRHYLTRGRPQMVGLREEKRVFVNQRGHGLTRQGLYKIVQRHARTA-GLGDKMSPHTL 261 Query: 180 RHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDG 232 RH++ H+L + +Q + GH D + ++YT + A + Sbjct: 262 RHTFATHLLAGGCDLRSLQEMLGHADIATTQIYTHLSAERLRDVYFDAHPRAQ 314 >UniRef50_Q7MNQ0 Tyrosine recombinase xerD n=287 Tax=Proteobacteria RepID=XERD_VIBVY Length = 305 Score = 224 bits (572), Expect = 2e-57, Method: Composition-based stats. Identities = 48/245 (19%), Positives = 94/245 (38%), Gaps = 33/245 (13%) Query: 3 NVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP---- 58 + + ++ R+ V +L P + +V ALL Sbjct: 78 SRARMLSAIRRLFQYLHREKVRADDPSALLVSPKLPQRLPKDISEEQVDALLDAPDPNDP 137 Query: 59 -DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRL 117 + R + L+ TG+R+ E LT E+ L + V G+ K+ RL Sbjct: 138 VELRDKAMLELLYATGLRVTELVSLTMENISL----------RQGVVRVTGKGGKE--RL 185 Query: 118 VPLTDISYVRQMESWMITTRPR-----RREPLWA------VTDETMRNWLKQAVRRAEAD 166 VP+ + + + +E+++ RP + ++ +T +T + +K A D Sbjct: 186 VPMGENA-IDWIETFIKQGRPALLGETSSDVVFPSKRARQMTRQTFWHRIKFYAVIAGID 244 Query: 167 GVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAV 226 + ++PH RH++ H+L + +V+Q L GH D + ++YT V + + Sbjct: 245 ----TDHLSPHVLRHAFATHLLNYGADLRVVQMLLGHSDLSTTQIYTHVATERLKQIHSQ 300 Query: 227 PFTGD 231 Sbjct: 301 HHPRA 305 >UniRef50_Q03FK2 Tyrosine recombinase xerC n=72 Tax=Bacilli RepID=XERC_PEDPA Length = 301 Score = 224 bits (571), Expect = 2e-57, Method: Composition-based stats. Identities = 36/244 (14%), Positives = 78/244 (31%), Gaps = 37/244 (15%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYM------PDQR 61 ++ + + L ++ + P + E++ L + R Sbjct: 74 VSALRSFYRFLVKNDLVDKNPFELVQLKKQSDKLPHFFYEKEMNMLFEAVYQAEGAQKLR 133 Query: 62 HHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLT 121 + + L+ TGMR+ E L D V G+ K+ R VP Sbjct: 134 NIAILEVLYGTGMRVSECAALQWSDIDFSMQTILV----------LGKGNKE--RYVPFG 181 Query: 122 DISYVRQMESW-------MITTRPRRREPLW------AVTDETMRNWLKQAVRRAEADGV 168 + ++++ ++ + ++ +T + L Q + Sbjct: 182 RYAK-EALQNYRKNEWEPFLSKYKQTHNFVFINHYAKPITTTGIEYILNQVI-----TAS 235 Query: 169 HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPF 228 + + PH RHS+ +L + + +Q L GH + ++YT V + + F Sbjct: 236 SLNGKIHPHMLRHSFATALLNNGADLRTVQELLGHSSLSTTQIYTHVTKEKLQESYRKYF 295 Query: 229 TGDG 232 Sbjct: 296 PRST 299 >UniRef50_D2MQ50 Phage integrase, N-terminal SAM domain protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MQ50_9FIRM Length = 297 Score = 224 bits (571), Expect = 2e-57, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 87/221 (39%), Gaps = 27/221 (12%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRH-------HMLFATLWNTGMRIGE 78 +SL ++ + P++L EV LL R + ++ G+RI E Sbjct: 92 ENPVSLIQVRKNETYLPSFLSVEEVKQLLNSFT--RDDPKQELNRTILELIYACGLRISE 149 Query: 79 ARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP 138 LT L+ + G+ K+ R+VP+ + V+ ++ ++ RP Sbjct: 150 LCSLTVAQVQLET----------GILRILGKGNKE--RIVPIPNQ-VVKDLDYYLNLIRP 196 Query: 139 ---RRREPLWAVTDETMRNWLK--QAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQP 193 + + + + R + Q + + +A F +TPH+ RH+Y H+L Sbjct: 197 IWNQHKTNTFFINHLGNRITARSIQLLLKQKAMECGFQKDITPHSLRHTYATHLLQAGAD 256 Query: 194 RKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 ++IQ L GH + ++ E+YT V + + Sbjct: 257 LRIIQELLGHSNIKTTEIYTHVQNRQLFEAYQNFHPLSKKK 297 >UniRef50_D2Q578 Integrase/recombinase n=3 Tax=Bifidobacterium RepID=D2Q578_9BIFI Length = 306 Score = 224 bits (571), Expect = 2e-57, Method: Composition-based stats. Identities = 45/232 (19%), Positives = 74/232 (31%), Gaps = 36/232 (15%) Query: 22 GVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP----------------DQRHHML 65 GV A ++ PA L + L+ + R+ + Sbjct: 89 GVTNANPAAMLMTPKIPDTLPAVLSESQAEKLMDCVDEQMPKSRTKSVRKQAVGLRNAAM 148 Query: 66 FATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISY 125 L+ TG+R+ E L D V G+ K R+VP + Sbjct: 149 LEVLYATGIRVAELVGLDVHDVAFDNRTMKV----------TGKGNKQ--RVVPFGVPA- 195 Query: 126 VRQMESWMITTRPR----RREPLWAVTDETMR--NWLKQAVRRAEADGVHFSIPVTPHTF 179 + + W+ RPR R + + R + + V A ++PH Sbjct: 196 EQSIRRWLEDGRPRLVRARSADALFLGAQGNRIDQRVVRQVVHECAQRAGVP-DISPHAL 254 Query: 180 RHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 RHS H+L + +Q L GH ++ + YT V + A F Sbjct: 255 RHSAATHLLDGGADLRQVQELLGHSSLKTTQRYTHVSIEQLKARYGQAFPRA 306 >UniRef50_A6CBK7 Integrase/recombinase n=5 Tax=Planctomycetaceae RepID=A6CBK7_9PLAN Length = 313 Score = 224 bits (571), Expect = 3e-57, Method: Composition-based stats. Identities = 39/228 (17%), Positives = 74/228 (32%), Gaps = 26/228 (11%) Query: 21 PGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMR 75 G R + P +L ++ LL P R + TL++ G+R Sbjct: 100 EGYSKTNPAKPLRTPRTGRKLPHFLTTDQIGTLLEAPPANQKMGLRDRAILETLYSAGLR 159 Query: 76 IGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMIT 135 + E L +D D V G+ K+ R+ P+ + + + W+ Sbjct: 160 VSELVALNVSDWDQDANIIRV----------LGKGRKE--RIAPIGSFA-AKALTHWLEE 206 Query: 136 TRPRRRE-------PLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHML 188 + L + + + + + +PHT RH++ H+L Sbjct: 207 REAKPGAHPDSDALFLNRLKTRLTSRSVGRMLEKYLLQ-TGLDKKTSPHTLRHTFATHLL 265 Query: 189 YHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAA 236 + +Q L GH+ + ++YT V + T R Sbjct: 266 DGGADLRSVQELLGHKSLTTTQIYTHVSTKRLLETYEKAHPHAQRSKK 313 >UniRef50_B6BVG8 Tyrosine recombinase XerC n=2 Tax=Betaproteobacteria RepID=B6BVG8_9PROT Length = 295 Score = 224 bits (571), Expect = 3e-57, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 76/217 (35%), Gaps = 22/217 (10%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYMP----DQRHHMLFATLWNTGMRIGEARML 82 S + S P L +V L+ D R + +++G+R+ E + Sbjct: 90 DPTSGIKAPKSQKKLPQTLSIDQVFNLINIPQTNFIDTRDRAILEFFYSSGLRLSELVNI 149 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR-- 140 D +E+ G+ K R+VPL + + ++ W++ Sbjct: 150 HLSDID----------TNEQTLKVLGKGNK--FRIVPLGRKA-IEALDLWILQRNKLNKL 196 Query: 141 -REPLWAVTDETMRNWLK--QAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVI 197 + + + + + Q + A + + PH RHS+ H+L Q + + Sbjct: 197 VDDEFLFLNQQGKKLTARAIQYRLKFWAQKNNIPENIHPHLLRHSFASHVLQSSQDLRAV 256 Query: 198 QALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 Q L GH + + ++YT + ++ + Sbjct: 257 QELLGHSNISTTQIYTHLDFQHLSKIYDQAHPRSKKK 293 >UniRef50_C6WZV5 Integrase n=2 Tax=Flavobacteriaceae RepID=C6WZV5_FLAB3 Length = 302 Score = 223 bits (570), Expect = 3e-57, Method: Composition-based stats. Identities = 36/218 (16%), Positives = 80/218 (36%), Gaps = 25/218 (11%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARM 81 +L P L +V ++ + +R+ + L+ G+R+ E Sbjct: 97 NPTTLLESPKLGLYLPDTLSFEDVERIIKAINISTDLGRRNQCMIEVLYGCGLRVSELID 156 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR---- 137 L + + + V G+ K R VPL + + ++ ++ R Sbjct: 157 LKISNINFKELYLKV----------DGKGDK--SRFVPLATYT-AKLIKEYIQEIRSKYK 203 Query: 138 -PRRREPLWAVTDET--MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPR 194 ++ E + + M + + + + + ++PHTFRHS+ H+L + Sbjct: 204 INKKCEDVLFLNSRGSAMSRVIVFIIIKELTEKAGINKKISPHTFRHSFATHLLQNGADL 263 Query: 195 KVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDG 232 + IQ + GH + E+YT + ++ + + Sbjct: 264 RYIQEMLGHSSITTTEIYTHLKNEELRDVILNFHPRNK 301 >UniRef50_Q1D804 Tyrosine recombinase xerC n=9 Tax=Deltaproteobacteria RepID=XERC_MYXXD Length = 300 Score = 223 bits (570), Expect = 4e-57, Method: Composition-based stats. Identities = 46/243 (18%), Positives = 78/243 (32%), Gaps = 27/243 (11%) Query: 3 NVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP---- 58 + S + + + A+ L + P L EV A+L Sbjct: 71 SRARRLASIKSFYKYLVRQKLLPASPAKLVKSPKLPKTLPKVLPVEEVFAILDMPDVKTV 130 Query: 59 -DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRL 117 R + L+ G+RI E L D S ++ G+ K+ RL Sbjct: 131 LGLRDRAILELLYGGGLRISELCGLDLLDID----------RSGRIVRVMGKGSKE--RL 178 Query: 118 VPLTDISYVRQMESWMITT-------RPRRREPLWAVTDETMRNWLKQAVRRA--EADGV 168 VP+ S +R +E+++ R + + R + R Sbjct: 179 VPVNAQS-IRALEAYLARRGELLATIRKDQAPEAMFLNFRGGRLTPRSIARHLDTYVLKC 237 Query: 169 HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPF 228 + V+PH RHS+ H+L + IQ L GH + + YT+V + Sbjct: 238 ALTRKVSPHAMRHSFATHLLGGGADIRSIQELLGHSSLSTTQRYTQVTWEQLQQVYDSAH 297 Query: 229 TGD 231 Sbjct: 298 PRA 300 >UniRef50_B2KBN7 Integrase family protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KBN7_ELUMP Length = 295 Score = 223 bits (569), Expect = 4e-57, Method: Composition-based stats. Identities = 42/214 (19%), Positives = 79/214 (36%), Gaps = 20/214 (9%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ-----RHHMLFATLWNTGMRIGEARM 81 L + P +L E L+ +Q R LF ++++G+R E Sbjct: 95 NPFKLLPLPKREKLLPKFLTQEETDRLIDTAANQGKLPARDKALFELIYSSGLRRSEVTG 154 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRR 141 L+ + DL+ V G+ K+ RLVP+TD++ + ++ ++ T Sbjct: 155 LSIKDIDLN----------LGVVRVMGKGSKE--RLVPITDLA-IEALKEYLSTRGVYNS 201 Query: 142 EPLWAVTDETMRNWLK--QAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQA 199 + R + + + + VT H+ RHS+ HML + + +Q Sbjct: 202 GDPLFLNRLGGRLTGDGLAYLVKNITIKANLARKVTAHSLRHSFATHMLNNGCDLRSLQE 261 Query: 200 LAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGR 233 + GH+ + +VYT V + Sbjct: 262 MLGHKSLSATQVYTHVSLDRLKKIYGQTHPRSKE 295 >UniRef50_B8FH24 Tyrosine recombinase XerC n=2 Tax=Desulfobacteraceae RepID=B8FH24_DESAA Length = 315 Score = 223 bits (569), Expect = 4e-57, Method: Composition-based stats. Identities = 43/238 (18%), Positives = 80/238 (33%), Gaps = 24/238 (10%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYM-----PDQRH 62 +S G A+L E ALL + R Sbjct: 91 LSSLRSFYRFLEKRGRVAVNPAQSVVTPKRKKTVAAHLTVDEAFALLDSILDDSLAGARD 150 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 +F L++TG+R+ E L + G V G+ K+ R+VP+ Sbjct: 151 RAMFECLYSTGIRVSELAGLNMGRVNFSGKTLRV----------LGKGDKE--RIVPVGA 198 Query: 123 ISY--VRQMESWMITTRPRRREP-LWAVTDETMR---NWLKQAVRRAEADGVHFSIPVTP 176 + ++ + P+ +P + R +++ + + D + + P++P Sbjct: 199 KALEHIKAYRDRLAVEGPKNPDPEAVFLNKNGGRLTTRSIRRILEKIVRD-MGLNRPLSP 257 Query: 177 HTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 H RH++ HML + + +Q L GH + YT V + A + Sbjct: 258 HGLRHTFATHMLDNGADLRSVQELLGHASISTTGRYTHVSIDRLMAAYDKAHPRGEKS 315 >UniRef50_B8FRH1 Integrase family protein n=3 Tax=Clostridiales RepID=B8FRH1_DESHD Length = 298 Score = 223 bits (568), Expect = 5e-57, Method: Composition-based stats. Identities = 38/233 (16%), Positives = 78/233 (33%), Gaps = 22/233 (9%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRH 62 ++ G+ + P +L E+ L+ R Sbjct: 80 LSALRAFFKFLCREGILQKNPIQRIATPKLGRKLPHFLSLEELDRLIRTPDCATLLGARD 139 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 ++ L+ +G+R+ E L + D VR G+ K+ R+VPLT+ Sbjct: 140 QVILELLYGSGLRVSELADLNRQDIDAGSSLLRVR----------GKGNKE--RIVPLTN 187 Query: 123 ISYVRQMESWMITTRPRRREPLWAVTDETMRNWLK--QAVRRAEADGVHFSIPVTPHTFR 180 + + ++ ++ + + R ++ + + A S + PH R Sbjct: 188 YA-LEAARQYLEMREDKQE--ALLLNYQGTRLSVRSIRRILDGLALEAGLSQHLHPHMLR 244 Query: 181 HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGR 233 HS+ H+L + +Q L GH S ++YT + + + Sbjct: 245 HSFATHLLDGGADLRSVQELLGHAKLSSTQIYTHLTKERLREVYEQNHPRAKK 297 >UniRef50_Q1NT18 Tyrosine recombinase XerC n=2 Tax=Deltaproteobacteria RepID=Q1NT18_9DELT Length = 339 Score = 223 bits (568), Expect = 5e-57, Method: Composition-based stats. Identities = 47/252 (18%), Positives = 82/252 (32%), Gaps = 34/252 (13%) Query: 2 NNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-- 59 ++V ++ G+ + G P L EV +LL Sbjct: 100 SSVARKLSALRSFFRFLRKNGIINDDPAAAIAAPKGEGYLPVVLSVDEVFSLLEMPGAGD 159 Query: 60 ---QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVR 116 R + L+ TG+R+ E L DL V G+ K+ R Sbjct: 160 RFAARDRAILELLYATGLRVSELAGLDLAQLDLADGMVRVV----------GKGNKE--R 207 Query: 117 LVPLTDISYVRQMESWM--------------ITTRPRRREPLWAVTDETMRNWLK--QAV 160 LVP+ + V +E+++ + R V R + + + Sbjct: 208 LVPMGT-AAVAAIEAYLPQRQVLLRQTAGQQKEGKKARGADPLLVNSRGGRLTSRSIERL 266 Query: 161 RRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDM 220 + A+ + V+PH RHS+ H+L +V+Q L GH + + YT + + Sbjct: 267 VKMYAERAGIAARVSPHALRHSFATHLLEMGADLRVVQELLGHASLSTTQRYTHLNLDHL 326 Query: 221 AATLAVPFTGDG 232 A Sbjct: 327 TAVYDQAHPLAN 338 >UniRef50_Q4UYY0 Tyrosine recombinase xerC n=153 Tax=Gammaproteobacteria RepID=XERC_XANC8 Length = 322 Score = 223 bits (568), Expect = 5e-57, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 77/222 (34%), Gaps = 28/222 (12%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALL----FYMPDQRHHMLFATLWNTGMRIGEARM 81 + + R + P L A E L+ R L +++G+R+ E Sbjct: 118 TSPAAALRAPKAPRKLPQVLDADEAVRLVEVPTDAPLGLRDRALLELFYSSGLRLSELCA 177 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRR 141 L DLD V G+ K RLVP+ + V + +W + + Sbjct: 178 LRWRDLDLDSGLVTV----------LGKGGKQ--RLVPVGSHA-VAALRAWQRDSGGSAQ 224 Query: 142 EPLWA------VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRK 195 ++ ++ ++ +KQ R V PH RHS+ H+L + Sbjct: 225 THVFPGRAGGAISQRAVQIRIKQLAVR-----QGMFKHVHPHMLRHSFASHILESSGDLR 279 Query: 196 VIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAE 237 +Q L GH D + ++YT + +A R A Sbjct: 280 GVQELLGHSDIATTQIYTHLDFQHLAKVYDAAHPRAKRKKAT 321 >UniRef50_C2CV68 Integrase/recombinase XerD n=3 Tax=Bifidobacteriaceae RepID=C2CV68_GARVA Length = 335 Score = 223 bits (568), Expect = 6e-57, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 78/244 (31%), Gaps = 51/244 (20%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMPD--------QRHHMLFATLWNTGMRIG 77 + + + P L EV ++ R L L+ TG R+ Sbjct: 106 SDPSAEVKAPKQAEHLPDVLSISEVERVIDAAGGFGSTDAVSLRDRALVEFLYATGARVS 165 Query: 78 EARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR 137 EA L E DL +E V G+ K RLVP+ + VR + ++ R Sbjct: 166 EAVGLKFEDIDL----------TESVVRLSGKGQKQ--RLVPIGKCA-VRALRDYLANAR 212 Query: 138 P---------------RRREPLW-----------AVTDET---MRNWLKQAVRRAEADGV 168 P R + PL + R +A+ RA Sbjct: 213 PILASRAQKSPATAKSRLKSPLNSSSKSANTHVIFLNKRGKSLSRQSAWEAISRAGKMA- 271 Query: 169 HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPF 228 + PHT RHS+ H++ + +Q L GH + ++YT + + + Sbjct: 272 KIGKELHPHTLRHSFATHLISGGADVRTVQELLGHASVTTTQIYTHISPDALMEAYVMSH 331 Query: 229 TGDG 232 Sbjct: 332 PRAR 335 >UniRef50_B8I2V9 Tyrosine recombinase XerD n=5 Tax=Bacteria RepID=B8I2V9_CLOCE Length = 294 Score = 223 bits (568), Expect = 6e-57, Method: Composition-based stats. Identities = 39/217 (17%), Positives = 71/217 (32%), Gaps = 27/217 (12%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARM 81 S P L EV LL R + L+ TG+R+ E Sbjct: 93 DPTSELESPKVEKKLPQILSTQEVELLLDQPKCLDLKGIRDKAMLELLYATGIRVSELIS 152 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR---- 137 L + + D + ++ R +P+ IS + ++ +R Sbjct: 153 LNLDDINFDLGLIKCN-----------KGTRE--RTIPIGSISTA-AVHEYLEKSRNFLI 198 Query: 138 PRRREPLWAVT---DETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPR 194 +E V R + ++ + + +TPHT RHS+ H+L + Sbjct: 199 QDSQEIALFVNVNGKRLTRQGFWKIIKHY-KNQAKINKDITPHTLRHSFAAHLLENGADL 257 Query: 195 KVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 + IQ + GH D S ++Y ++ + Sbjct: 258 RSIQEMLGHSDISSTQIYAQIAKNKIKDVYKKTHPRA 294 >UniRef50_B4D116 Integrase family protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D116_9BACT Length = 315 Score = 222 bits (567), Expect = 8e-57, Method: Composition-based stats. Identities = 43/214 (20%), Positives = 79/214 (36%), Gaps = 24/214 (11%) Query: 30 SLRRMATSTGATPAYLLAPEVSALL-----FYMPDQRHHMLFATLWNTGMRIGEARMLTP 84 + + + P + +V LL R L L+ +G+R+ E Sbjct: 115 EVLPLPRTERYLPETMNELQVDRLLEGISIDAPRGLRDRALLELLYASGLRVSELVNARL 174 Query: 85 ESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP----RR 140 E+ DLD V G+ K +RLVP+ + + +++ RP ++ Sbjct: 175 ENLDLDARIIRV----------TGKGNK--MRLVPVGQKAC-DAIRAYLEKERPEMVGKK 221 Query: 141 REPLWAVTDETMRNWLKQA--VRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQ 198 ++ + + + +A A I V PH RHS+ H+L + ++IQ Sbjct: 222 TGSEVFLSSRGTKLTTVRIWQIVKACAKNAGLDINVYPHLLRHSFATHLLSNGADLRIIQ 281 Query: 199 ALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDG 232 + GH D + ++YT V + A Sbjct: 282 EMLGHADISTTQIYTHVDQQRLKAVHHRFHPRAK 315 >UniRef50_B1VH11 Integrase/recombinase n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VH11_CORU7 Length = 303 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 47/243 (19%), Positives = 87/243 (35%), Gaps = 25/243 (10%) Query: 2 NNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-- 59 + + + GV + P L EV+A+L P+ Sbjct: 74 STRARILAAVRNFHRFLTGEGVTEGDVADDVARPGQAASIPKALSIAEVTAILESCPNDD 133 Query: 60 ------QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKD 113 R L L++TG R+ E L + D VR G+ K+ Sbjct: 134 AASLIQIRDRALLEMLYSTGARVSELLGLDVDDVDPTEKLIIVR----------GKGSKE 183 Query: 114 EVRLVPLTDISYVRQMESWMITTRP---RRREPLWAVTDETMRNWLKQAVRRAEADGVHF 170 R+VP+ D + + ++ +++ RP ++ + R + A + Sbjct: 184 --RVVPVGDPA-LDALQHYLVRVRPAFNKKGSAALFLNRNGGRMGRQSAFNMVSSVSEKA 240 Query: 171 S-IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFT 229 V+PH+FRHS+ H+L +V+Q L GH + + ++YT+V + + Sbjct: 241 GVAGVSPHSFRHSFATHLLEGGADIRVVQELLGHSNVVTTQIYTKVSPDHLREAWSESHP 300 Query: 230 GDG 232 Sbjct: 301 RSN 303 >UniRef50_C8XHP9 Tyrosine recombinase XerD n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XHP9_NAKMY Length = 353 Score = 221 bits (565), Expect = 1e-56, Method: Composition-based stats. Identities = 53/252 (21%), Positives = 78/252 (30%), Gaps = 37/252 (14%) Query: 15 SLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFY--------MPDQRHHMLF 66 + G A T P L + LL R L Sbjct: 105 HRFLLNEGTAEADPSRDVHPPTPARRLPKALPVEAIGRLLDAAGSADPDGPRGLRDRALL 164 Query: 67 ATLWNTGMRIGEARMLTPESFDL--------------DGVRPFVRILSEKVRARRGRPPK 112 L+ TG RI E L + DL D P V V G+ K Sbjct: 165 ELLYATGARISEVVGLDVDDIDLGPGRLAGRSSTDPTDPTDPQVAPPITSVVRLHGKGAK 224 Query: 113 DEVRLVPLTDISYVRQMESWMITTRP------------RRREPLWAVTDETMRNWLKQAV 160 + RLVP+ + +R +E++++ RP R L R Q + Sbjct: 225 E--RLVPVGSFA-LRALEAYLVRGRPVLAAAGRGAGPARGALFLNIRGGRLSRQSAWQVL 281 Query: 161 RRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDM 220 A + V+PHT RHS+ H+L + +Q L GH + ++YT V + Sbjct: 282 ADAARRAGLPASGVSPHTLRHSFATHLLEGGADVRSVQELLGHASVTTTQIYTLVTVDAL 341 Query: 221 AATLAVPFTGDG 232 Sbjct: 342 REVYVTAHPRAR 353 >UniRef50_UPI0001698363 tyrosine recombinase XerD n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698363 Length = 227 Score = 221 bits (565), Expect = 1e-56, Method: Composition-based stats. Identities = 42/215 (19%), Positives = 86/215 (40%), Gaps = 34/215 (15%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFY-----MPDQRHHMLFATLWNTGMRIGEARM 81 + + + + P + + E+ L+ R+ + TL+ G+R+ E Sbjct: 26 DPVKNIDIPKTGLSLPEVISSKEMELLIDSVDTKNPRGLRNAAMLETLYGAGLRVSELVS 85 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR-- 139 + E+ +L+ + G+ K+ R+VP+ + + ++ +W++ RP Sbjct: 86 MKMENINLEASFIRI----------FGKGSKE--RIVPIGSFA-IEKVRNWIMHGRPIIL 132 Query: 140 ---RREPLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYH 190 L+ +T + LK+ R S +TPHTFRHS+ H+L Sbjct: 133 KNIPSHYLFVARAGKPMTRQGFWKLLKKYSR-----ASGISKKITPHTFRHSFATHLLEG 187 Query: 191 RQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLA 225 + +Q + GH D + ++YT V + + Sbjct: 188 GADLRSVQTMLGHSDISTTQIYTHVSRDYLRKCIK 222 >UniRef50_A9F3K0 Site-specific recombinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F3K0_SORC5 Length = 323 Score = 221 bits (565), Expect = 1e-56, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 78/235 (33%), Gaps = 25/235 (10%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRH 62 ++ + +L P L E++ L+ R Sbjct: 103 LSAVRGFVRFLLRERRIERDPCALVERPRVGRRLPKVLSFDEIALLIEAPEQGTFKGLRD 162 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 + ++ G+R+ E L D + + G+ K RLVPL + Sbjct: 163 RAMLHVMYAAGLRVSEVVRLKLADID----------RRKGIVMALGKGGK--RRLVPLGE 210 Query: 123 ISYVRQMESWMITTRPRRREPL---WAVTDETMRNWLKQAVRRA---EADGVHFSIPVTP 176 + +++++ R ++ +QAV + A V + P +P Sbjct: 211 PALA-AIDAYLELRATHPRSAATQVLFLSPRGG-PLTRQAVWKLLGGYARAVGIAKPSSP 268 Query: 177 HTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 H RHS+ H+L + +QAL GH + + E+YT + + A Sbjct: 269 HKLRHSFATHLLEGGADLRSVQALLGHANVVTTEIYTHLADDHVRAAYRRAHPRA 323 >UniRef50_Q11RL1 Site-specific recombinase n=15 Tax=Bacteroidetes RepID=Q11RL1_CYTH3 Length = 299 Score = 221 bits (565), Expect = 1e-56, Method: Composition-based stats. Identities = 39/237 (16%), Positives = 79/237 (33%), Gaps = 25/237 (10%) Query: 7 LQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALL-----FYMPDQR 61 + + + + + SL P L PE+ +L R Sbjct: 76 ILSGIKSFFRFLLMEEIRDEDPSSLIDSPKLGRKLPDTLSFPEIEQILLAIDLSTPEGMR 135 Query: 62 HHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLT 121 + + TL++ G+R+ E L + D G+ K+ RLVP+ Sbjct: 136 NRAMLETLYSCGLRVSELTDLKISNLFFDD----------GFVKVLGKGNKE--RLVPIG 183 Query: 122 DISYVRQMESWMITTR-----PRRREPLWAVTDET--MRNWLKQAVRRAEADGVHFSIPV 174 + + + + R + E + + + + + A + V Sbjct: 184 RDAR-KYIGMYRNEVRCHLDIVKGAENYVFLNRRGNKLSRVMVFTIIKNLAVKIGLKKTV 242 Query: 175 TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 +PHTFRHS+ H++ + +Q + GH + E+YT + + + Sbjct: 243 SPHTFRHSFATHLIEGGADLRAVQEMLGHESITTTEIYTHLDRDYLQQIIKDFHPRS 299 >UniRef50_B9YZP4 Tyrosine recombinase XerC n=3 Tax=Proteobacteria RepID=B9YZP4_9NEIS Length = 323 Score = 221 bits (564), Expect = 1e-56, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 76/220 (34%), Gaps = 21/220 (9%) Query: 25 FATALSLRRMATSTGATPAYLLAPEVSALLFYMPD------QRHHMLFATLWNTGMRIGE 78 A R S P L SALL D R +F L++ G+R+ E Sbjct: 109 PANPCHGIRPPKSPKTLPKALPVDATSALLDAPIDPEDDLALRDQAMFELLYSCGLRLSE 168 Query: 79 ARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP 138 L DL E + G+ K R++P+ + + +E W+ Sbjct: 169 LTGLDLADLDL----------GEGLLTAHGKGNK--TRILPIGRQAR-QALERWLAIRPS 215 Query: 139 RRREPLWAVTDETMRNWLKQAVRRAE--ADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 + E R +Q +R E A V PH RHS+ H+L + Sbjct: 216 QPGEGAVFTGKSGRRLSGRQVEKRLEQWAQRHGSDRHVHPHMLRHSFASHLLQSSGDLRA 275 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAA 236 +Q L GH + + ++YT + +A D + Sbjct: 276 VQELLGHANLSTTQIYTSLDFQHLAKVYDATHPRAKLDES 315 >UniRef50_D1R4B2 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R4B2_9CHLA Length = 304 Score = 221 bits (564), Expect = 1e-56, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 83/236 (35%), Gaps = 27/236 (11%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYM-----PDQRH 62 S + G L P L EV L+ R Sbjct: 85 LVSLKVFFGFLKREGTIEQNPSMLLESPKLWQLLPDILDIEEVDLLMNQPDNKTAKGVRD 144 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 +F L+ +G+R+ E LT S D ++ G+ K+ R+VP+ Sbjct: 145 RAIFELLYGSGLRVSEVCTLTIYSID------------DQYIRVYGKGSKE--RIVPIGS 190 Query: 123 ISYVRQMESWMITTR---PRRREPLWAVTDETM---RNWLKQAVRRAEADGVHFSIPVTP 176 + + ++ ++ R +E VT R + ++++ + ++P Sbjct: 191 QALM-AVDQYLSLYRWQWDSEKEQSLFVTLRGKSMDRISIWRSIKEYAQQA-GITKTISP 248 Query: 177 HTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDG 232 HT RHS+ H+L + +VIQ L GH + S + YTRV + + Sbjct: 249 HTLRHSFATHLLNNGADLRVIQDLLGHANISSTDRYTRVSSAHLQEAFHRFHPKWK 304 >UniRef50_C0W9S4 Tyrosine recombinase xerC n=1 Tax=Acidaminococcus sp. D21 RepID=C0W9S4_9FIRM Length = 302 Score = 221 bits (564), Expect = 2e-56, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 84/243 (34%), Gaps = 37/243 (15%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRH 62 +S + G+ + + P +L E++ LL QR Sbjct: 78 ISSLRSFYRYLMREGLTDKNPFTKVKTPKLEKKLPVFLEEFEMNHLLELPDLSTELGQRD 137 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 L L++TG R+ E LT DL G+ K+ R+VPL Sbjct: 138 RALLEFLYSTGCRVSELVGLTLTRLDLSNRYAL----------LLGKGHKE--RIVPLGH 185 Query: 123 ISYVRQMESWMITTRPRR--------------REPLWAVTDETMRNWLKQAVRRAEADGV 168 +R M +++ R +T ++R L + V A Sbjct: 186 P-CIRAMNAYLTGARRVLMEKYEVPSHDFIFVNHRGTPLTARSVRRILDRYVEMA----- 239 Query: 169 HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPF 228 V+PHT RH++ H+L H + +Q L GH + ++YT V A +A+ Sbjct: 240 SIQKHVSPHTIRHTFATHLLDHGADLRSVQELLGHASLSTTQIYTHVTADRIASVYKKHH 299 Query: 229 TGD 231 Sbjct: 300 PRA 302 >UniRef50_Q2RJP7 Tyrosine recombinase XerD subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJP7_MOOTA Length = 313 Score = 221 bits (563), Expect = 2e-56, Method: Composition-based stats. Identities = 51/258 (19%), Positives = 90/258 (34%), Gaps = 39/258 (15%) Query: 1 MNNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLF----Y 56 MN + + R L G ++ ++L P L E+ LL Sbjct: 77 MNRKLAALRAFYRFLL---RAGQVQSSPVALLSGPRREKRLPGCLSHAEMEKLLSIPATT 133 Query: 57 MPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVR 116 R + TL+ +G+R+ E + + DL G+ ++ R Sbjct: 134 PLGLRDRAILETLYASGIRVAELVGMDQDDLDL----------VAGYARVLGKGRRE--R 181 Query: 117 LVPLTDISYVRQMESWMITTRPRRREPLWA--------------VTDETMRNWLKQAVRR 162 +VPL + V+ +E+++ RP +T +R L V + Sbjct: 182 VVPLGRYA-VKALENYLHRARPELAARRIPPEPRALFLNHLGGRLTTRGVRERLSHYVEK 240 Query: 163 AEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAA 222 A V+PHT RH++ H+L +V+Q L GH + ++YT + + Sbjct: 241 AALRRG-----VSPHTIRHTFATHLLEGGADLRVVQELLGHIRLATTQIYTHISQSQLRE 295 Query: 223 TLAVPFTGDGRDAAEILR 240 RD + R Sbjct: 296 VYRQFHPRASRDNIDNRR 313 >UniRef50_B0VFS7 Site-specific recombinase, phage integrase family n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFS7_9BACT Length = 298 Score = 221 bits (563), Expect = 2e-56, Method: Composition-based stats. Identities = 41/217 (18%), Positives = 73/217 (33%), Gaps = 23/217 (10%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALL-----FYMPDQRHHMLFATLWNTGMRIGEARM 81 + + P EV LL R+ + TL+++G+RI E Sbjct: 95 NPMEKIKRPKYEVPLPKCFTEEEVRTLLSIPDTDSPFGIRNKAILETLYSSGLRISELAG 154 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP--- 138 + + DL + G+ K R+VPL + + + +++ Sbjct: 155 IRLQDIDLKR----------GLVRVTGKGNKQ--RIVPLGSYA-IEAINNYLKVRPQFMR 201 Query: 139 RRREPLWAVTDETMRNWLKQ--AVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 L +T KQ + + + V + +PH+ RHS+ H+L + Sbjct: 202 ENSPDLLFLTKSGKAFDTKQLDIILKRYFELVAKAKGYSPHSLRHSFATHLLSRGADLRA 261 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGR 233 IQ L GH + E YT + D+ Sbjct: 262 IQELLGHSLLSTTETYTHISLEDIKEAYKKGHPRSKE 298 >UniRef50_D2RKK7 Tyrosine recombinase XerC n=3 Tax=Firmicutes RepID=D2RKK7_ACIFE Length = 311 Score = 220 bits (562), Expect = 3e-56, Method: Composition-based stats. Identities = 51/243 (20%), Positives = 81/243 (33%), Gaps = 37/243 (15%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRH 62 +S G + R P +L E++ LL +R Sbjct: 87 ISSLRSFYRYLRREGRVKTNPFTRVRTPKLEKKLPVFLEEFEINLLLRMPDCTTVLGRRD 146 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 + L++TG R+ E LT DL G+ K+ RLVPL Sbjct: 147 RAILEFLYSTGCRVSELVGLTLTRVDLGNRYAI----------LLGKGRKE--RLVPLGH 194 Query: 123 ISYVRQMESWMITTRPRRREPLW--------------AVTDETMRNWLKQAVRRAEADGV 168 V ME ++ +R E ++ ++R L + V Sbjct: 195 P-CVAAMEDYLRHSRGTLMEKYQAPRHQTVFVNSRGRPLSARSVRRILDKYVEMTA---- 249 Query: 169 HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPF 228 V+PHT RH++ H+L H + +Q L GH + ++YT V A + A Sbjct: 250 -LQKHVSPHTIRHTFATHLLDHGADLRAVQELLGHVSLSTTQIYTHVTAERLTAVYEKHH 308 Query: 229 TGD 231 Sbjct: 309 PRA 311 >UniRef50_C8R2R7 Tyrosine recombinase XerD n=1 Tax=Desulfurivibrio alkaliphilus AHT2 RepID=C8R2R7_9DELT Length = 356 Score = 220 bits (561), Expect = 3e-56, Method: Composition-based stats. Identities = 50/236 (21%), Positives = 86/236 (36%), Gaps = 28/236 (11%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLF------YMPDQR 61 ++ + +L + A P L + EV LL + R Sbjct: 135 ISALRAFFRFLQGEQLLGHDPAALLDLPKIGRALPKVLSSAEVEQLLAPPAPPASILALR 194 Query: 62 HHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLT 121 +H + L+ TGMR+ E L + + G+ K+ RLVP Sbjct: 195 NHAMLHLLYATGMRVSELVKLPVAAVN-----------QAGHLRILGKGSKE--RLVPFG 241 Query: 122 DISYVRQMESWMITTRP----RRREPLWAVTDETM---RNWLKQAVRRAEADGVHFSIPV 174 + + + M ++ RP +RR VT R Q VR++ + + + Sbjct: 242 EAAR-QAMAVYITQARPRLLKKRRSDFLFVTGRGTAMTRLRFWQIVRKSARER-GIAREI 299 Query: 175 TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 +PH RHS+ H+L H + +Q + GH D + ++YT V + A Sbjct: 300 SPHVLRHSFATHLLEHGADLRAVQVMLGHADIATTQIYTHVDTNRLKAIHRKFHPR 355 >UniRef50_Q6MD42 Probable XerD protein n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MD42_PARUW Length = 291 Score = 220 bits (561), Expect = 4e-56, Method: Composition-based stats. Identities = 41/234 (17%), Positives = 79/234 (33%), Gaps = 26/234 (11%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRH 62 + + + G+ L L P L E+ +L R Sbjct: 74 LIAIKVLFRFLKREGMITTNILLLMETPKLWQLIPDVLSLEEIDRILAIPNIQTWRGARD 133 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 + TL+ G+R+ E L D + G+ K+ R+VP+ Sbjct: 134 KAILETLYACGLRVSELCQLKIYDVD------------DTFVRVLGKGGKE--RIVPIGQ 179 Query: 123 ISYVRQMESWMITTRPRRREP--LWAVTDET---MRNWLKQAVRRAEADGVHFSIPVTPH 177 + + ++ ++ +T ++ R + + V+ ++PH Sbjct: 180 QA-IAAIDGYLSFREGGENSRNEFLFITKKSKPLTRALVWKLVKFYARQAS-IFKSISPH 237 Query: 178 TFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 TFRH++ H+L H +VIQ + GH S + YT V + + + Sbjct: 238 TFRHTFATHLLDHGADLRVIQDMLGHASINSTDRYTHVSQIRLQQAFQAFHPRN 291 >UniRef50_Q8KET0 Tyrosine recombinase xerD n=12 Tax=Chlorobiaceae RepID=XERD_CHLTE Length = 304 Score = 220 bits (561), Expect = 4e-56, Method: Composition-based stats. Identities = 43/237 (18%), Positives = 82/237 (34%), Gaps = 27/237 (11%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-------- 59 ++ + + P+ L E++ LL Sbjct: 80 ISAIRSFHKFLLTERLATMNPAENIHQPKLARYLPSVLTIEEMATLLDAPLKRHPTSTFM 139 Query: 60 QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVP 119 R + L+ TG+R+ E L +L FVR+ G+ K+ RLVP Sbjct: 140 LRDKAMLEFLYATGVRVSELLGL--SRLNLHMDDGFVRVF--------GKGSKE--RLVP 187 Query: 120 LTDISYVRQMESWMITTRPR-----RREPLWAVTDET-MRNWLKQAVRRAEADGVHFSIP 173 + + + M+ ++ RP + ++ + + + R A P Sbjct: 188 VGQTA-ISWMKRYLDELRPGMMSATSHDTIFLNSRGGPLSRMAAWNIVREHAVIAGIEKP 246 Query: 174 VTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 ++PHTFRHS+ H+L +V+Q + GH + ++YT + + Sbjct: 247 ISPHTFRHSFATHLLEGGADLRVVQEMLGHSSIIATQIYTHIDRSFIKEVHKTFHPR 303 >UniRef50_Q2IIH9 Tyrosine recombinase XerD subunit n=11 Tax=Deltaproteobacteria RepID=Q2IIH9_ANADE Length = 314 Score = 219 bits (560), Expect = 4e-56, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 80/235 (34%), Gaps = 24/235 (10%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRH 62 ++ + L A V A P L EV LL R Sbjct: 93 LSAIRSLHRLLAAERVTSADPSDEIESPRPGRRLPGLLSHDEVDRLLAAPDVRSAAGIRD 152 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 + L+ TG+R+ E L +L+ +V RG+ K+ R+VP+ Sbjct: 153 RAMLELLYATGLRVSELVSLQLNDVNLET----------RVLVARGKGDKE--RIVPVGA 200 Query: 123 ISYVRQMESWMITTRPR----RREPLWAVTDETMRNWLKQAVRRA--EADGVHFSIPVTP 176 + +++++ R R RR VT R + + A ++P Sbjct: 201 PA-ADAVKAYLAVARERLLHGRRSKDLFVTPRGGRMTRQGFAKILDRCARRAGIRRRISP 259 Query: 177 HTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 H RHS+ H+L + +Q + GH D + ++YT V + Sbjct: 260 HKLRHSFATHLLEGGADLRAVQEMLGHADVSTTQIYTHVDRTHVKRLYDRFHPRA 314 >UniRef50_Q2PYI3 Tyrosine recombinase xerC n=1 Tax=uncultured marine bacterium Ant4D3 RepID=Q2PYI3_9BACT Length = 312 Score = 219 bits (560), Expect = 4e-56, Method: Composition-based stats. Identities = 37/216 (17%), Positives = 68/216 (31%), Gaps = 21/216 (9%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFY------MPDQRHHMLFATLWNTGMRIGEAR 80 + R S P L ++S +L R + ++ G+R+ E Sbjct: 100 NPVDGIRAPKSPRKLPNSLDPDQISQVLNATITSDDPMAMRDKAMLELTYSCGLRLAELA 159 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR 140 L DL V G+ K R +P+ + + ++SW+ + Sbjct: 160 SLNVFDIDLTDASLIV----------TGKGNK--TRQLPIGRQA-ITALKSWLQQRGQLK 206 Query: 141 --REPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQ 198 + R ++ R + PH RHS+ H+L + +Q Sbjct: 207 CHDANALFINHRGQRMGVRGIQMRMANMAATHGQHIHPHMLRHSFASHLLQSSGDLRAVQ 266 Query: 199 ALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 L GH + + +VYT + +A Sbjct: 267 ELLGHSNISTTQVYTHLDYQHLAKVYDKAHPRAQEK 302 >UniRef50_D1N8W9 Tyrosine recombinase XerD n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N8W9_9BACT Length = 299 Score = 219 bits (560), Expect = 5e-56, Method: Composition-based stats. Identities = 53/238 (22%), Positives = 92/238 (38%), Gaps = 29/238 (12%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-------DQ 60 + + +S G+ ++ P +L EV A L P + Sbjct: 75 LVAVKMLSRFLTEEGILKKDVTAVMDSPKLWRILPDFLSEAEVDAFLKAFPASVKEPFEM 134 Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R+ + L+++G+R+ E L + D D V G+ K R+VP+ Sbjct: 135 RNRAILEVLYSSGLRVSELARLPLTAVDFDNELLRVV----------GKGSK--TRIVPI 182 Query: 121 TDISYVRQMESWMITTRP-----RRREPLWAVTDETM---RNWLKQAVRRAEADGVHFSI 172 ++ +R + ++ RP R P ++ R W+ V+ A A Sbjct: 183 GKVA-LRTLRRYLADVRPLLAEKNPRSPYVFLSKSGRPLNREWIWNVVKVAAARA-GIHK 240 Query: 173 PVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 + PHT RHS+ H+L H +VIQ + GH D + E+YT + + +AA Sbjct: 241 NIHPHTLRHSFASHLLAHGADLRVIQEMLGHADISTTEIYTHIDSNRLAAIHHKFHPR 298 >UniRef50_A6U170 Tyrosine recombinase xerC n=66 Tax=Staphylococcaceae RepID=XERC_STAA2 Length = 298 Score = 219 bits (560), Expect = 5e-56, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 74/230 (32%), Gaps = 32/230 (13%) Query: 20 APGVDFATALSLRRMATSTGATPAYLLAPEVSALL-----FYMPDQRHHMLFATLWNTGM 74 + P + E+ AL + R ++ L+ TG+ Sbjct: 85 TLDENIINPFVQLVHPKKEKYLPQFFYEEEMEALFKTVEEDTSKNLRDRVILELLYATGI 144 Query: 75 RIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMI 134 R+ E + + D V G+ K+ R VP + +E+++ Sbjct: 145 RVSELVNIKKQDIDFYANGVTV----------LGKGSKE--RFVPFGAY-CRQSIENYLE 191 Query: 135 TTRPRR---------REPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIM 185 +P + A+T+ +R L V+R + PH RH++ Sbjct: 192 HFKPIQSCNHDFLILNMKGEAITERGVRYVLNDIVKRTAGVS-----EIHPHKLRHTFAT 246 Query: 186 HMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDA 235 H+L + +Q+L GH + + YT V + ++ Sbjct: 247 HLLNQGADLRTVQSLLGHVNLSTTGKYTHVSNQQLRKVYLNAHPRAKKEN 296 >UniRef50_C1SMY6 Site-specific recombinase XerD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMY6_9BACT Length = 312 Score = 219 bits (560), Expect = 5e-56, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 82/225 (36%), Gaps = 35/225 (15%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARM 81 + + + ALL R ++ ++ TG+R+ E Sbjct: 104 NPARMLKFPKKEQKAFKVFNIDSIIALLDAPDKDKPAGMRDALIQELMYGTGVRVSELVG 163 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMI------T 135 L D G+R VR G+ K+ R+VP+ D+ ++ + ++ Sbjct: 164 LNLSDIDFGGMRILVR----------GKGKKE--RIVPIADM-HIEMINDYLDVKMDICN 210 Query: 136 TRPRRREPLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLY 189 E ++ +TD ++R +++ ++ A + +PH+FRHSY H+L Sbjct: 211 GYLPDNEAIFINKFGSRLTDRSVRRIVEKYLKIA-----GLPMDFSPHSFRHSYATHLLE 265 Query: 190 HRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 + IQ+L GH + + YT + ++ Sbjct: 266 GGADLRTIQSLLGHESLTTTQKYTHLNLTELLRVYDATHPFASGK 310 >UniRef50_B1GYR5 Tyrosine recombinase XerC n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GYR5_UNCTG Length = 314 Score = 219 bits (560), Expect = 5e-56, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 77/210 (36%), Gaps = 20/210 (9%) Query: 30 SLRRMATSTGATPAYLLAPEVSALLFYMP-DQRHHMLFATLWNTGMRIGEARMLTPESFD 88 S+ P++L E+ LL R + ++ G+RI E L ++ D Sbjct: 118 SMPASLKKDKKVPSFLTENEMQMLLNLPDLKPRDRAMIELFYSCGLRIEELVSLDLKNID 177 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR----PRRREPL 144 V G+ K+ R+VP+ DI + ++ ++ R P Sbjct: 178 F----------ISNVVTVTGKRNKE--RIVPVGDI-CLHAIKDYINKRRNLGLPYDIRSP 224 Query: 145 WAVTDETMR--NWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAG 202 ++D R + + F+ V+PHT RH++ H+L + +Q + G Sbjct: 225 VFLSDRAKRLGQRTARRILHRYFVKAGFTKKVSPHTLRHTFATHILDRGCDLRSVQEMLG 284 Query: 203 HRDPRSMEVYTRVFALDMAATLAVPFTGDG 232 H++ S ++YT V + Sbjct: 285 HKNLSSTQIYTHVTIESLKKVYKETHPRAK 314 >UniRef50_B9XL74 Integrase family protein n=1 Tax=bacterium Ellin514 RepID=B9XL74_9BACT Length = 337 Score = 219 bits (560), Expect = 5e-56, Method: Composition-based stats. Identities = 49/250 (19%), Positives = 82/250 (32%), Gaps = 45/250 (18%) Query: 10 SPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ--------- 60 + I GV A+ + + P +L A ++ LL Sbjct: 105 ALRTFYKFLIRHGVVSASPIKNVSLPKMEKRLPKFLTAQQMVELLGAPLKPLATPKKKGP 164 Query: 61 ----------RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRP 110 R + T+++ G+RI E LT + D + VR G+ Sbjct: 165 GRPISATVCYRDVAILETIYSCGLRISELCGLTAQDIDWNEQLVRVR----------GKG 214 Query: 111 PKDEVRLVPLTDISYVRQMESWMI-TTRPRRREPLWA--------VTDETMRNWLKQAVR 161 K+ R VP+ + + W P P++ ++ ++ LK+ + Sbjct: 215 KKE--RQVPIGEPALTAIRNYWSTLEQSPGGGSPVFLGETEKAAALSPRVLQQRLKKYLA 272 Query: 162 RAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMA 221 A +TPH RHSY HML + +Q L GH + +VYT V + Sbjct: 273 LA-----GLDPSLTPHKLRHSYATHMLDAGADLRSVQELLGHAHLITTQVYTHVSTERLK 327 Query: 222 ATLAVPFTGD 231 Sbjct: 328 RAYDSAHPRA 337 >UniRef50_Q67PC5 Recombinase n=2 Tax=Firmicutes RepID=Q67PC5_SYMTH Length = 356 Score = 219 bits (559), Expect = 5e-56, Method: Composition-based stats. Identities = 45/236 (19%), Positives = 82/236 (34%), Gaps = 43/236 (18%) Query: 25 FATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEA 79 ++ P +L E+ LL R L L+ TG+R+GE Sbjct: 134 PTNPVAGVHTPKLERRLPVFLDEEEIGGLLSQPDTHTPLGLRDRALLELLYATGLRVGEL 193 Query: 80 RMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWM------ 133 L D V G+ K+ R VP+ + ++ + ++ Sbjct: 194 VALNRGDIDYSEGWVIVW----------GKGRKE--RAVPVGSEA-LQALGHYLRDGWPV 240 Query: 134 --------ITTRPRRREPLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTF 179 + P ++PL+ ++D ++R L + V + S ++PH Sbjct: 241 LRARAPAAEQSLPEAKQPLFLNKLGGRLSDRSVRRLLDRYVSQLA-----LSRQISPHKI 295 Query: 180 RHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDA 235 RH++ HML H + +Q + GH + ++YT V + R A Sbjct: 296 RHTFATHMLNHGADLRAVQEMLGHASLSTTQIYTHVTTQRLRTEYLRAHPRQRRAA 351 >UniRef50_B5EB31 Tyrosine recombinase XerD n=4 Tax=Deltaproteobacteria RepID=B5EB31_GEOBB Length = 292 Score = 219 bits (559), Expect = 6e-56, Method: Composition-based stats. Identities = 47/240 (19%), Positives = 84/240 (35%), Gaps = 24/240 (10%) Query: 2 NNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYM---- 57 + ++ + + G ++ PA L EV ALL Sbjct: 65 RSRARALSALRMLHRFLLREGYSELNPTAIIEAPKGVRKLPAVLSGREVEALLSSPLDTG 124 Query: 58 -PDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVR 116 + R + L+ TG+R+ E L +L S G+ K+ R Sbjct: 125 AQELRDKAMLELLYATGLRVSELVGLKLSEVNL----------SAGYLMTIGKGDKE--R 172 Query: 117 LVPLTDIS------YVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHF 170 LVP+ + + Y++Q ++ + L + R +++ A Sbjct: 173 LVPMGESACHATGVYLQQARGELLKEKASTLLFLSRLGGGMSRQAFWNIIKK-RALQAGV 231 Query: 171 SIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 ++PHT RHS+ H+L + + +Q + GH D S ++YT V M A Sbjct: 232 RTSISPHTLRHSFATHLLENGADLRSVQIMLGHADLSSTQIYTHVTRERMKKLHADFHPR 291 >UniRef50_B3PEI6 Tyrosine recombinase XerC n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PEI6_CELJU Length = 313 Score = 219 bits (559), Expect = 7e-56, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 75/219 (34%), Gaps = 21/219 (9%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYMPD----QRHHMLFATLWNTGMRIGEARML 82 + P L + + + D +R L ++++G+R+ E L Sbjct: 100 NPADGIAAPKTPKKLPKTLDVDQTAQFVAVEGDDFIHKRDRALLELIYSSGLRLAEVTSL 159 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR-- 140 D V G+ K R +P+ ++ + ++ W+ Sbjct: 160 NLGDIDWGDAMVTV----------TGKGSK--TRTLPVGSVA-IAALKDWLSQREQYAPA 206 Query: 141 REPLWAVTDETMRNWLKQAVRRAEADGV--HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQ 198 EP +T R + R + V PV PH RHS+ HML +++Q Sbjct: 207 SEPALFITQRGKRISHRAVQLRLQQLSVQQGMDNPVHPHMLRHSFASHMLESSGDLRLVQ 266 Query: 199 ALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAE 237 L GH + + ++YT + +A GR + Sbjct: 267 ELLGHANISTTQIYTHLDFQHLAKVYDKAHPRAGRKKSS 305 >UniRef50_A8RBK4 Putative uncharacterized protein n=1 Tax=Eubacterium dolichum DSM 3991 RepID=A8RBK4_9FIRM Length = 311 Score = 219 bits (558), Expect = 8e-56, Method: Composition-based stats. Identities = 40/241 (16%), Positives = 82/241 (34%), Gaps = 23/241 (9%) Query: 6 PLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD----QR 61 + S + R + P Y ++ LL D Sbjct: 85 HMITSLHVFHRYLSMTYPKLLNPVQNIRTKKAVQHLPVYFNMQDIERLLDSFRDSDAEIM 144 Query: 62 HHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLT 121 + L+ G+R+ E L + L+ V G+ K+ R+VP+ Sbjct: 145 DKAIVELLYGCGLRVSECCSLMLQQVYLEQGFLRVI----------GKGNKE--RMVPMH 192 Query: 122 DISYVRQMESWMITTRPRR--REPLWAVTDETMRNWLKQAV---RRAEADGVHFSIPVTP 176 + +E+++ R +R R + + + +Q + + + ++ Sbjct: 193 AR-CKKALENYLTKVRKQRYARSNFVFINAKG-QEITRQYIHVMIKKRLLALGLDERLSA 250 Query: 177 HTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAA 236 H+FRHS+ H+L +V+Q L GH D + ++YT V + + + Sbjct: 251 HSFRHSFASHLLDGGADLRVVQELLGHSDISTTQIYTHVQNKRLQSVYTSFHPRAKKHKE 310 Query: 237 E 237 + Sbjct: 311 D 311 >UniRef50_B9YAX8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YAX8_9FIRM Length = 323 Score = 218 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 70/213 (32%), Gaps = 23/213 (10%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARM 81 R P +L ++ L R+ + T++ G+R+ E Sbjct: 112 NPTRGLRAPKLNRTIPEFLTFDQMMTLFDSFDLNDPAALRNRAILETMYACGLRVSEVCS 171 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP--- 138 LT DL+ V G+ K R+VP + ++ +R Sbjct: 172 LTLAELDLNERILTV----------TGKGDKQ--RIVPFYKR-LRTLLTRYLRDSRALYL 218 Query: 139 RRREPLWAVTDET--MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 + V+ + Q + + P+ PH RHS+ H+L + + Sbjct: 219 KEEHGFVFVSQRGAPITPRAVQLILAQAGQDAGLNQPLHPHILRHSFATHLLDNGVDLRT 278 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATLAVPFT 229 +Q L GH + ++YT V + ++ Sbjct: 279 VQELLGHSSLSTTQIYTHVTVDRLKQSVDAAHP 311 >UniRef50_Q60AJ2 Integrase/recombinase XerC n=1 Tax=Methylococcus capsulatus RepID=Q60AJ2_METCA Length = 304 Score = 218 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 49/216 (22%), Positives = 77/216 (35%), Gaps = 20/216 (9%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYMPD----QRHHMLFATLWNTGMRIGEARML 82 R S P L V+ LL D R ++ +++G+R+ E L Sbjct: 96 NPARAVRPPRSGRRLPRLLDVDAVAGLLDAPADDRLETRDRAMWELFYSSGLRLSELVGL 155 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR--PRR 140 D FVR +G+ K R VP+ + + + +W+ R Sbjct: 156 DVVDVDFGAGSVFVR---------KGKGGK--ARYVPVGAKA-LEAIGAWLEARRVLTGA 203 Query: 141 REPLWAVTDETMRNWLKQAVRRAEADGV--HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQ 198 +P ++ + R + R E S V PH RHS+ HML + +Q Sbjct: 204 GQPALFLSRQGRRIAPRTVEMRLERWRAKLGLSERVHPHMLRHSFASHMLEASGDLRAVQ 263 Query: 199 ALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 L GH + ++YT V +AA RD Sbjct: 264 ELLGHATLATTQIYTHVDFQRLAAVYDQSHPRARRD 299 >UniRef50_C7LWB1 Integrase family protein n=2 Tax=Desulfovibrionales RepID=C7LWB1_DESBD Length = 312 Score = 218 bits (555), Expect = 2e-55, Method: Composition-based stats. Identities = 51/241 (21%), Positives = 83/241 (34%), Gaps = 26/241 (10%) Query: 5 IPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFY-----MPD 59 + + R D AL+ ++ P L + L+ Sbjct: 83 LSALRAFYRFLRQRKMVVEDPCAALANPKLPKVH---PKVLNVDQAIHLVETEITLDPEG 139 Query: 60 QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVP 119 R L L+ +G+R+ EA L DLD +K+ G+ K+ RLVP Sbjct: 140 LRDLALLEVLYGSGLRVSEALGLDFAHVDLD----------QKLVRVLGKGRKE--RLVP 187 Query: 120 LTDISYVRQMESWMITTR---PRRREPLWAVTDETMRNWLKQA--VRRAEADGVHFSIPV 174 LT + R + ++ P RE + R KQA + + A + Sbjct: 188 LTGPAAER-LARYIEQRGAFAPAAREQAVFLGKRGGRLSRKQADRIVKEMAVRSGAPCSI 246 Query: 175 TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 +PHT RHS+ HML + +Q L GH + + YT + + + Sbjct: 247 SPHTLRHSFASHMLQAGADLRSVQELLGHSRISTTQRYTHLDLAQVMRVYDAAHPLAAKK 306 Query: 235 A 235 Sbjct: 307 D 307 >UniRef50_D0WF42 Tyrosine recombinase XerD n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WF42_9ACTN Length = 315 Score = 217 bits (554), Expect = 2e-55, Method: Composition-based stats. Identities = 47/238 (19%), Positives = 80/238 (33%), Gaps = 28/238 (11%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFY-----MPDQRH 62 ++ + + G+ + + P L +V+ LL R+ Sbjct: 90 VSALKGFHAFLVRDGLVASDPACALPLPGVPARLPDVLSIDQVNTLLDQEFREGPLGVRN 149 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 L+ G+R E L LD E + G+ ++ R+VP+ Sbjct: 150 ACALELLYGCGLRASELSGLDAGDAFLD----------EGILRIVGKGSRE--RIVPIGG 197 Query: 123 ISYVRQMESWMITTRPRRREP--------LWAVTDETMRNWLKQAVRRAEADGVHFSIPV 174 + R + S++ RP R P L A R + VR A + + Sbjct: 198 SA-ARCLASYLEDARPLLRSPRRLTPAVMLNARGGRLSRQSIHSIVREAG-HVIGI-KDL 254 Query: 175 TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDG 232 PHT RHS+ H+L + IQ + GH D + ++YT V + Sbjct: 255 HPHTLRHSFATHLLEGGADLRAIQEMLGHSDISTTQIYTHVDRTHVREEYLSAHPRAK 312 >UniRef50_D2R836 Tyrosine recombinase XerC n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R836_9PLAN Length = 323 Score = 217 bits (554), Expect = 2e-55, Method: Composition-based stats. Identities = 48/260 (18%), Positives = 88/260 (33%), Gaps = 44/260 (16%) Query: 3 NVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP---- 58 ++ S G+ + R P +L E+ LL P Sbjct: 71 SIARRLASLRTFYKFAQREGMADSNPAKPLRNPRKDRKLPHFLAGDELGKLLEAPPADDP 130 Query: 59 -DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRL 117 R + TL++ G+R+ E + E DLD E V RG+ K+ RL Sbjct: 131 AGLRDRAMLETLYSAGLRVSELVGMNDEDLDLD----------EGVVRIRGKGSKE--RL 178 Query: 118 VPLTDISYVRQMESWMITTRPRR---------------------REPLWAVTDETMRNWL 156 PL + +R ++ W+ + + +T ++ L Sbjct: 179 APLGSFA-LRAIKKWLAHRKLASISVSSTRKSASKAGHGTPVFTNKFGKRLTTRSVARML 237 Query: 157 KQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVF 216 ++ ++ + TPHT RH++ H+L + +Q L GH+ + ++YT V Sbjct: 238 EKYLKL-----TGLDLRTTPHTLRHTFATHLLDRGADIRSVQELLGHKSLVTTQIYTHVS 292 Query: 217 ALDMAATLAVPFTGDGRDAA 236 + A + Sbjct: 293 TAALKAVYERAHPRARNKSG 312 >UniRef50_C8WWD9 Integrase family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWD9_ALIAD Length = 307 Score = 217 bits (554), Expect = 2e-55, Method: Composition-based stats. Identities = 41/210 (19%), Positives = 69/210 (32%), Gaps = 22/210 (10%) Query: 32 RRMATSTGATPAYLLAPEVSALLFYMPD-----QRHHMLFATLWNTGMRIGEARMLTPES 86 R+ P YL EV+AL+ ++ R L L+ TG+R+ E L Sbjct: 100 VRLPKRDRRLPRYLHEEEVAALIDHVGGDDFVALRDRALLEFLYATGVRVSECVHLDIGD 159 Query: 87 FDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWA 146 DL S G+ ++ +V V + ++ R Sbjct: 160 LDL----------SAGFARVLGKGGRERYVMV---GRRAVDALRRYLPLRDRMARCSAVF 206 Query: 147 VTDETMR---NWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 + R +++ + R + + H RHS+ HML + +Q L GH Sbjct: 207 INRRGGRLTDRSVRRVLERRIQEVPGL-RSIHVHGLRHSFATHMLNGGADLRSVQELLGH 265 Query: 204 RDPRSMEVYTRVFALDMAATLAVPFTGDGR 233 S ++YT +A R Sbjct: 266 ASLSSTQIYTHTSREQLARAYYAAHPRARR 295 >UniRef50_O26979 Probable tyrosine recombinase xerC-like n=3 Tax=cellular organisms RepID=XERCL_METTH Length = 311 Score = 217 bits (553), Expect = 3e-55, Method: Composition-based stats. Identities = 45/217 (20%), Positives = 80/217 (36%), Gaps = 37/217 (17%) Query: 29 LSLRRMATSTGATPAYLLAPEVSALLFYMP------------DQRHHMLFATLWNTGMRI 76 L + T + P L EV +L+ + R ++ + L+++G+R+ Sbjct: 111 LEEVKAPKRTKSLPKSLNEDEVKSLINAVEVADDGSVIRRFIKTRDRLILSLLYSSGLRV 170 Query: 77 GEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITT 136 E L D D +R G+ KD + L D + + ++ Sbjct: 171 SELVSLRINDIDPDERTIRIR----------GKGDKDRIVLF---DENTRDLLMDYL-KR 216 Query: 137 RPRRREPLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYH 190 R E L+ +T ++ +K R+A VTPH RHS+ H+L + Sbjct: 217 RIHESEYLFLNRFGDPLTPRYVQMMIKNYARKA-----GIKKKVTPHILRHSFATHLLKN 271 Query: 191 RQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVP 227 + IQ L GH + + ++YT V + Sbjct: 272 GVDIRAIQQLLGHSNLSTTQIYTSVDMQTLKNVYDRA 308 >UniRef50_D0AM75 Phage integrase n=14 Tax=Bacilli RepID=D0AM75_ENTFC Length = 301 Score = 217 bits (553), Expect = 3e-55, Method: Composition-based stats. Identities = 37/224 (16%), Positives = 71/224 (31%), Gaps = 36/224 (16%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFY-----MPDQRHHMLFATLWNTGMRIGEAR 80 S + P + E+ AL D R+ L L+ +G+R+ E Sbjct: 96 ENPFSYVHLKKKNLRLPRFFYENEMQALFDSVAGDSPLDLRNRALLEVLYGSGIRLSECS 155 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR 140 L+ D D + G+ K+ R PL + ++ + R Sbjct: 156 SLSVSDIDFDSEVMLI----------HGKGNKE--RYAPLGSFA-QDALQEYFREGRQVL 202 Query: 141 -------------REPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHM 187 +T + L Q ++++ D + PH RH++ H+ Sbjct: 203 MTKYHEEHDIVFVNHHGKPITPTGIEYVLNQMIKKSSLDS-----DIHPHMLRHTFATHL 257 Query: 188 LYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 L + + +Q L GH + + ++Y V + Sbjct: 258 LNNGADLRTVQELLGHANLSTTQIYAHVTKESLQKNYRSFHPRA 301 >UniRef50_C1SMP5 Site-specific recombinase XerD n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMP5_9BACT Length = 295 Score = 217 bits (553), Expect = 3e-55, Method: Composition-based stats. Identities = 52/237 (21%), Positives = 84/237 (35%), Gaps = 34/237 (14%) Query: 13 RVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFA 67 R I + + + + P +L EV L+ R ++F Sbjct: 77 RFYDFLIMEKIISSNPVGFVSKPSKWEKLPVFLNFDEVEKLINSPDMSSGLGYRDRIIFE 136 Query: 68 TLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVR 127 T+++TGMRI E L D+ V G+ K R VP+ S Sbjct: 137 TMYSTGMRISELVGLKVLDMDMHREIMKV----------TGKGSKQ--RFVPMYG-SLAE 183 Query: 128 QMESWMITTR----PRRREPLWAVTDET-------MRNWLKQAVRRAEADGVHFSIPVTP 176 +M++++ R E ++ + +K+ RA V+P Sbjct: 184 KMKTYLDIRHDSLVKERDEGWLFLSRNGKKLDREYVWMIIKKYCERA-----GIKKNVSP 238 Query: 177 HTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGR 233 HT RHS+ H+L + + IQ L GH D + E YT+V TL + Sbjct: 239 HTLRHSFATHLLTNGADLRTIQVLLGHVDLSTTERYTQVTDNKARNTLLNCHPRFRK 295 >UniRef50_Q7NVH1 Tyrosine recombinase xerC n=1 Tax=Chromobacterium violaceum RepID=XERC_CHRVO Length = 299 Score = 216 bits (551), Expect = 5e-55, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 82/242 (33%), Gaps = 20/242 (8%) Query: 2 NNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP--- 58 ++ +S + G + P L +ALL + Sbjct: 64 RSLARRLSSWRQFYHWLQRNGEREDNPAAGLYAPKRDKLLPKALPVDGTAALLDRIEGES 123 Query: 59 --DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVR 116 D R +F +++ G+R+ E L + D +R G+ K+ R Sbjct: 124 ELDARDRAIFELVYSCGLRLSETVALNLDDVDFSDSLLRIR----------GKGGKE--R 171 Query: 117 LVPLTDISYVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGV--HFSIPV 174 LVP+ + +R + +W+ EP + R +Q +R + V Sbjct: 172 LVPIGAEAMLR-LRTWLGERSAGMDEPALFLGRHGHRLGGRQVEKRLRDWAIKTGAGQHV 230 Query: 175 TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 PH RHS+ HML + +Q L GH + S ++YT + +A + Sbjct: 231 HPHMLRHSFASHMLQSSGDLRAVQELLGHANLSSTQIYTALDFQHLAKVYDGAHPRARKR 290 Query: 235 AA 236 Sbjct: 291 GK 292 >UniRef50_Q2C2Q0 Tyrosine recombinase n=4 Tax=Gammaproteobacteria RepID=Q2C2Q0_9GAMM Length = 302 Score = 216 bits (551), Expect = 6e-55, Method: Composition-based stats. Identities = 41/219 (18%), Positives = 72/219 (32%), Gaps = 21/219 (9%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMPD----QRHHMLFATLWNTGMRIGEARM 81 A P L E++ LL D R + ++ G+R+ E Sbjct: 97 ANPAKGVAAPRKARPLPKNLDVDEMNQLLDVNDDDPLAIRDRAMMELMYGAGLRLAELVG 156 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP--R 139 + L S+ G+ K+ R+VP + ++ + W+ Sbjct: 157 IDVRHISL----------SKGDLRVIGKGDKE--RVVPFSGLAR-EWVAKWLKLRDNIAL 203 Query: 140 RREPLWAVTDETMRNWLKQAVRRAEADGVH--FSIPVTPHTFRHSYIMHMLYHRQPRKVI 197 EP V+ R + +R G S + PH RHS+ HML + + Sbjct: 204 AEEPALFVSKLGTRISTRNVQKRMAEWGQKQAVSSHINPHKLRHSFATHMLESSGDLRAV 263 Query: 198 QALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAA 236 Q L GH + + ++YT + +A + Sbjct: 264 QELLGHANLSTTQIYTHLDFQHLAKVYDEAHPRAKKRNK 302 >UniRef50_B1ZQV6 Tyrosine recombinase XerD n=3 Tax=Verrucomicrobia RepID=B1ZQV6_OPITP Length = 317 Score = 216 bits (550), Expect = 6e-55, Method: Composition-based stats. Identities = 42/241 (17%), Positives = 87/241 (36%), Gaps = 34/241 (14%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-----QRH 62 ++ ++ + +L ++ P L E++ LL R Sbjct: 91 LSALRSLAHFLVRERFRADDFTALLSGPKASRRIPGTLTEEEIARLLAAPTGGDARALRD 150 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 L +++G+R+ E L + DL+ V G+ K+ R+VP+ Sbjct: 151 RALLELFYSSGLRVSELAGLLLQQVDLEHGFLRV----------FGKGAKE--RVVPIGG 198 Query: 123 ISYVRQMESWMITTRP-----RRREPLW------AVTDETMRNWLKQAVRRAEADGVHFS 171 + + + +++ RP R L+ ++ + +K+ +RA + Sbjct: 199 KA-IEALATYLTAGRPHFVRSRTGSQLFLNKNGGPLSRVMLWMLVKKYAKRA-----GLT 252 Query: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 V PH RHS+ H+L + IQ + GH + ++YT V + + + Sbjct: 253 KNVKPHGLRHSFATHLLSGGADLRAIQEMLGHASISTTQIYTSVESQRLLEQHDKFHPRN 312 Query: 232 G 232 Sbjct: 313 R 313 >UniRef50_A4G2A1 Tyrosine recombinase XerD n=3 Tax=Proteobacteria RepID=A4G2A1_HERAR Length = 309 Score = 216 bits (550), Expect = 7e-55, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 85/231 (36%), Gaps = 26/231 (11%) Query: 12 ERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLF 66 +R L + R A P L +V ALL R + Sbjct: 92 KRFYQLALRQNRISDDPCLKMRSAKQPLRIPKTLSEAQVEALLAAPDVTTPLGLRDRTML 151 Query: 67 ATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYV 126 ++ +G+R+ E +L ++E V G+ K RLVP + + V Sbjct: 152 ELMYASGLRVTELVLLK----------SIEVGMNEGVLRITGKGGK--TRLVPFGEEARV 199 Query: 127 RQMESWMITTRP----RRREPLWAVTDETM---RNWLKQAVRRAEADGVHFSIPVTPHTF 179 +E ++ RP + + VT R +++ A + P++PHT Sbjct: 200 -WIERYLKEARPLILDGQIDDALFVTARGAAMTRQMFWTLIKK-HAAAAEINAPLSPHTL 257 Query: 180 RHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 RH++ H+L H +V+Q L GH D + ++YT V + + Sbjct: 258 RHAFATHLLNHGADLRVVQMLLGHSDISTTQIYTHVARERLKHLHQIHHPR 308 >UniRef50_B0VFY6 Tyrosine recombinase xerD n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VFY6_9BACT Length = 313 Score = 216 bits (550), Expect = 7e-55, Method: Composition-based stats. Identities = 49/215 (22%), Positives = 83/215 (38%), Gaps = 26/215 (12%) Query: 29 LSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLT 83 + L P L E+ LL +P + R+ ++ L+ TGMRI E ++ Sbjct: 113 MDLVPRIKLGVQLPDVLTVEEMFQLLNSLPVKTPLEIRNKLMMELLYATGMRISELLSIS 172 Query: 84 PESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP----- 138 +L V G+ K R VP D + ++ +RP Sbjct: 173 LHDLNLTERVILV----------HGKGSKQ--RYVPYVD-TLDELFAKYLKQSRPILLKL 219 Query: 139 RRREPLWAVTD--ETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 ++ E L+ R + +R+A + + VTPHTFRHS+ H+L ++ Sbjct: 220 KQSELLFLNNRGERMSRMGFWKILRKAVLEA-NIKKEVTPHTFRHSFATHLLEGGVNLRI 278 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 +QAL GH + ++YT + + T Sbjct: 279 VQALLGHSSIDTTQIYTHIDMKRLVETYKEYHPRA 313 >UniRef50_B2UMQ9 Tyrosine recombinase XerC n=4 Tax=Verrucomicrobia RepID=B2UMQ9_AKKM8 Length = 300 Score = 216 bits (550), Expect = 7e-55, Method: Composition-based stats. Identities = 36/224 (16%), Positives = 76/224 (33%), Gaps = 36/224 (16%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ------------RHHMLFATLWNTG 73 ++ + P +L ++ LL R + ++ G Sbjct: 95 TNPMTGVSLPRRKKTLPVFLTLNQMLELLELPYKTAVPANAPAWLPYRDAAILELFYSCG 154 Query: 74 MRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWM 133 MR+ E L S D + G+ K+ R++P+ + +E+++ Sbjct: 155 MRLSELVGLDVGSVD----------HRFRGVKVMGKGRKE--RILPVGTPALA-ALETYV 201 Query: 134 ITTRPRRREPLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHM 187 + PL+ ++ +++ L + V+ ++PH RH++ H+ Sbjct: 202 SMACLPKNSPLFVSRIGTRLSARSVQMMLNKYVKL-----SSIPFTISPHKIRHTFATHI 256 Query: 188 LYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 L + +Q L GH + ++YT V MA Sbjct: 257 LEAGADLRSVQELLGHASLSTTQIYTHVTRARMAEVYRQAHPRA 300 >UniRef50_Q1MRT1 Site-specific recombinase n=3 Tax=Desulfovibrionaceae RepID=Q1MRT1_LAWIP Length = 306 Score = 215 bits (549), Expect = 8e-55, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 84/224 (37%), Gaps = 24/224 (10%) Query: 25 FATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEA 79 + L P L E+ LL R ++ L+ +G+R+ E Sbjct: 95 LSNPALLIDGPKLPSLLPNILSQDEMLRLLTTPDITNKLGFRDKVILELLYASGIRVSEL 154 Query: 80 RMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR 139 + FD D + + G+ K+ R +PL + ++ + ++ RP Sbjct: 155 IGVHVLDFDQD----------KGIIKVFGKGGKE--RYIPLHSSA-MKLLIHYVQKIRPM 201 Query: 140 --RREPLWAVTDET---MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPR 194 E + R + + ++R + ++PHTFRH++ H+L Sbjct: 202 FTPIEKFLFLNRSGKGLTRQAIWKIIKRYALLAS-INKSISPHTFRHTFATHLLEGGADL 260 Query: 195 KVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEI 238 + +Q L GH D + E+YT V + + ++ ++EI Sbjct: 261 RSVQLLLGHVDMSATELYTHVQSDRLKYIHSMFHPRSNYVSSEI 304 >UniRef50_Q0VM16 Tyrosine recombinase xerC n=20 Tax=Proteobacteria RepID=XERC_ALCBS Length = 307 Score = 215 bits (549), Expect = 8e-55, Method: Composition-based stats. Identities = 44/241 (18%), Positives = 79/241 (32%), Gaps = 26/241 (10%) Query: 7 LQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFY------MPDQ 60 + ++ + G+ R S P L +VS LL Sbjct: 77 MLSTLRTFFRYLMREGLARDNPAIDIRAPKSGKRLPKALDVDQVSHLLDAGTSNSEPLAL 136 Query: 61 RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPL 120 R + L+ G+R+ E L +S DL + V G+ K R +P+ Sbjct: 137 RDQAIMELLYACGLRLAELLSLNLDSIDLHESQLLV----------TGKGNK--TRQLPV 184 Query: 121 TDISYVRQMESWMITTR---PRRREPLWAVTDETMRNW---LKQAVRRAEADGVHFSIPV 174 + + W+ + ++ R ++Q ++R + + Sbjct: 185 GKPALT-AVRRWLQVRPMLIKSSDQNALFISKNGRRLSPSSVQQRLKRHALER-GLDAHL 242 Query: 175 TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 PH RHS+ H+L + +Q L GH D + +VYT + +A R Sbjct: 243 HPHKLRHSFATHLLESSGDLRAVQELLGHADLATTQVYTHLDFQHLAQVYDGAHPRAQRR 302 Query: 235 A 235 Sbjct: 303 K 303 >UniRef50_Q7UQK2 Integrase/recombinase n=1 Tax=Rhodopirellula baltica RepID=Q7UQK2_RHOBA Length = 325 Score = 215 bits (549), Expect = 8e-55, Method: Composition-based stats. Identities = 46/225 (20%), Positives = 78/225 (34%), Gaps = 28/225 (12%) Query: 21 PGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-----QRHHMLFATLWNTGMR 75 G+ L + P L EV A L + QR L L+ TG R Sbjct: 115 EGITVDNPAELLATQKAWQRMPGVLSPNEVEAFLSAVKKSDSFWQRDRALLEVLYATGCR 174 Query: 76 IGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMIT 135 E L LD EK G+ K R+VP+ + +R ++ ++ Sbjct: 175 ASEVCTLRVRDLTLD----------EKTLRCHGKGDKQ--RMVPIGGRA-IRAIQLYLEE 221 Query: 136 TRPRRREPL------WAVTDETM---RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMH 186 +R + ++ R L + V+R S ++PH+ RHS+ H Sbjct: 222 SRHILADRNPGQIDELFLSRGGKALDRIQLWRLVKRYAKRA-GISDEISPHSLRHSFATH 280 Query: 187 MLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 +L + +Q + GH ++ ++YT V + Sbjct: 281 LLAGGADLRQVQEMLGHASIQTTQIYTHVEHSRLQRVHRDFHPRA 325 >UniRef50_B3DV17 Site-specific recombinase XerD n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DV17_METI4 Length = 315 Score = 215 bits (548), Expect = 1e-54, Method: Composition-based stats. Identities = 39/218 (17%), Positives = 79/218 (36%), Gaps = 26/218 (11%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYM-----PDQRHHMLFATLWNTGMRIGEAR 80 L + + + P +L E+ LL R + L+++G+R+ E Sbjct: 100 TNPLDHKELPSIQSRLPQFLTTKEIEKLLQAPFPDTPLGWRDKAILELLYSSGLRVSELI 159 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR- 139 L ES+ + + V G+ K+ R VP+ + ++ ++ R + Sbjct: 160 SLKLESYYPEHFQIKV----------LGKGNKE--RAVPIGKCAK-EALDKYIAEGRTKL 206 Query: 140 ---RREPLWAVTDET---MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQP 193 + + R+ ++Q + G V PH RH++ H++ + Sbjct: 207 LAKKTRGEVFLNQRGQPLTRSRIRQLIIHYARLG-GIDKKVYPHLLRHTFASHLVENGAD 265 Query: 194 RKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 +VIQ L GH + + ++YT V + Sbjct: 266 LRVIQELLGHANIATTQIYTHVNLKHLKEIHRRCHPRS 303 >UniRef50_P44630 Tyrosine recombinase xerD n=84 Tax=Proteobacteria RepID=XERD_HAEIN Length = 297 Score = 215 bits (548), Expect = 1e-54, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 85/222 (38%), Gaps = 33/222 (14%) Query: 25 FATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEA 79 ++ P YL +VS LL + R + L+ TG+R+ E Sbjct: 92 VDDPSAVLSSPKLPSRLPKYLTEQQVSDLLNTPNVEVPLELRDKAMLELLYATGLRVTEL 151 Query: 80 RMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP- 138 LT E+ + + V G+ K+ R+VP+ + + + +M+ RP Sbjct: 152 VSLTIENM----------SVQQGVVRVIGKGNKE--RIVPMGEEA-AYWVRQFMLYGRPV 198 Query: 139 ----RRREPLWA------VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHML 188 + + ++ +T +T + +K A+ D +PH RH++ H++ Sbjct: 199 LLNGQSSDVVFPSQRAQQMTRQTFWHRVKHYAILADIDADAL----SPHVLRHAFATHLV 254 Query: 189 YHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 H +V+Q L GH D + ++YT V + Sbjct: 255 NHGADLRVVQMLLGHTDLSTTQIYTHVAKERLKRLHERFHPR 296 >UniRef50_A6G731 Integrase/recombinase XerD n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6G731_9DELT Length = 302 Score = 215 bits (548), Expect = 1e-54, Method: Composition-based stats. Identities = 46/217 (21%), Positives = 74/217 (34%), Gaps = 25/217 (11%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARM 81 + + P L EV L+ R L ++ TG R+ EA Sbjct: 99 DPTQGIALPKAVNKLPELLSREEVVRLIAAPGVDTPLGLRDTALLEFMYATGCRVSEACD 158 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR-- 139 L S LD + + G+ K R+VPL D + V + +W+ RP Sbjct: 159 LELSSLHLD----------QGLVVLTGKGSKQ--RMVPLGDCALVALL-AWLEEGRPELV 205 Query: 140 ---RREPLWAVTDETMRNWLKQAVRRAEADG--VHFSIPVTPHTFRHSYIMHMLYHRQPR 194 RE V R + R + ++PH RHS+ H++ Sbjct: 206 ARAPREAHVFVNKRGSRLSRQGCFFRLRQHAVSAGITRDISPHKLRHSFATHLIEGGADL 265 Query: 195 KVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 + +Q L GH D + +VYT + + + Sbjct: 266 RAVQTLLGHADISTTQVYTHLSQSHVRHAYDLHHPRA 302 >UniRef50_Q2LT92 Tyrosine recombinase xerC n=1 Tax=Syntrophus aciditrophicus SB RepID=XERC_SYNAS Length = 310 Score = 214 bits (547), Expect = 1e-54, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 68/221 (30%), Gaps = 28/221 (12%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARM 81 L + PA L E+ LL R + +++G+R+ E Sbjct: 100 NPLEAVSTPRTEKYIPAVLSVDEIFVLLNLPFPEDVFGLRDRAILELFYSSGIRVSELTG 159 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRR 141 + E D +R G+ K+ R+VP+ + ++ +M+ Sbjct: 160 INEEDMDFSQGLIRIR----------GKGKKE--RIVPIGQPAS-EAVQRYMMKKPGSET 206 Query: 142 E--------PLWAVTDETMRNWLKQAVRRA--EADGVHFSIPVTPHTFRHSYIMHMLYHR 191 V R + R ++PHT RHS+ H++ Sbjct: 207 SGKAVATCPVPLFVNRRQGRLSARSVARILSKYVSMSGLQKQISPHTLRHSFATHLMDAG 266 Query: 192 QPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDG 232 + IQ L GH + + YT V + A Sbjct: 267 ADLRSIQELLGHESLSTTQKYTAVSVNRLMAVYDRAHPKAR 307 >UniRef50_D0U650 Site-specific recombinase XerD n=1 Tax=uncultured actinobacterium RepID=D0U650_9ACTN Length = 308 Score = 214 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 44/224 (19%), Positives = 83/224 (37%), Gaps = 25/224 (11%) Query: 25 FATALSLRRMATSTGATPAYLLAPEVSALLF------YMPDQRHHMLFATLWNTGMRIGE 78 +A S P L ++ +++ R + L+++G R+ E Sbjct: 94 YADPTLEIAPQKSARRLPKALTISQIVSMIDVAYREGQPITARDQAMLELLYSSGARVSE 153 Query: 79 ARMLTPESFD-LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR 137 + +D V L RG+ K+ R+VPL + + +E++++ R Sbjct: 154 LIGINLNDLSSIDTSDGKVTTL-----KLRGKGAKE--RIVPLGSFAT-KAVENYLVRVR 205 Query: 138 PRRREP------LWAVTDETMRNWLKQAVRRA---EADGVHFSIPVTPHTFRHSYIMHML 188 P + R +Q+ + AD + V+PH FRHSY H+L Sbjct: 206 PDLASKSSKVTSALFLNSRGSR-ISRQSAWQMVLDAADAAGITEHVSPHVFRHSYATHLL 264 Query: 189 YHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDG 232 +V+Q L GH + ++YT + + + A+ Sbjct: 265 NGGADIRVVQELLGHASVTTTQIYTLITIDKVRESYALTHPRAT 308 >UniRef50_B2A335 Tyrosine recombinase xerC n=2 Tax=Clostridia RepID=XERC_NATTJ Length = 299 Score = 214 bits (546), Expect = 2e-54, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 76/221 (34%), Gaps = 37/221 (16%) Query: 30 SLRRMATSTGATPAYLLAPEVSALLFYMPD----QRHHMLFATLWNTGMRIGEARMLTPE 85 +L P +L EV L+ D R + + +G+R+GE L + Sbjct: 97 ALLATPKKERKLPEFLSIEEVEMLINAPGDDPFGLRDKAILEVFYCSGIRLGELWGLDLQ 156 Query: 86 SFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREP-- 143 + DL G+ + RL PL + +E ++ RP + Sbjct: 157 NLDLQT----------GYLKVTGKGNIE--RLAPLGSFALA-AIEDYLYNARPELLKKNK 203 Query: 144 ------LWAVTDETMRNW-------LKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYH 190 + R +K+ V++ ++ V+PH+ RHS+ H+L Sbjct: 204 SVENCDALFLNKFGTRISQRSIRRRVKKYVQQTASEH-----RVSPHSLRHSFATHLLEG 258 Query: 191 RQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 + +Q L GH + + ++YT V M Sbjct: 259 GADLRAVQELLGHVNISTTQIYTHVNQARMTEVYNKYHPRA 299 >UniRef50_Q7MQB9 Tyrosine recombinase xerC n=141 Tax=Gammaproteobacteria RepID=XERC_VIBVY Length = 316 Score = 214 bits (546), Expect = 2e-54, Method: Composition-based stats. Identities = 44/244 (18%), Positives = 81/244 (33%), Gaps = 21/244 (8%) Query: 2 NNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-- 59 +++ +S I G+ A P L EV+ LL D Sbjct: 80 SSIATRLSSLRSFFDFLILRGILTANPAKGVSAPRKKRPLPKNLDVDEVNQLLEVNEDDP 139 Query: 60 --QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRL 117 R + ++ G+R+ E + L V G+ K+ Sbjct: 140 LAIRDRAIMELMYGAGLRLAELVDIDVRDVHLRSGEIRVI----------GKGNKERK-- 187 Query: 118 VPLTDISYVRQMESWMITTRP--RRREPLWAVTDETMRNWLKQAVRRAEADGVH--FSIP 173 VP ++ V + W+ EP V+ R + +R G + Sbjct: 188 VPFAGMA-VEWVGKWLKVRSGLADPSEPALFVSKLGTRISHRSVQKRMAEWGQKQAVASH 246 Query: 174 VTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGR 233 +TPH RHS+ H+L + +Q L GH + + ++YT + +A + Sbjct: 247 ITPHKLRHSFATHILESSNNLRAVQELLGHENISTTQIYTHLDFQHLADVYDQAHPRARK 306 Query: 234 DAAE 237 +++ Sbjct: 307 KSSQ 310 >UniRef50_D2RA84 Tyrosine recombinase XerD n=1 Tax=Gardnerella vaginalis 409-05 RepID=D2RA84_GARVA Length = 319 Score = 214 bits (546), Expect = 2e-54, Method: Composition-based stats. Identities = 46/220 (20%), Positives = 78/220 (35%), Gaps = 31/220 (14%) Query: 30 SLRRMATSTGATPAYLLAPEVSALLFYMPD--------QRHHMLFATLWNTGMRIGEARM 81 + + P L EV+ ++ + R L L+ TG RI EA Sbjct: 114 AQVKAPKQADYLPDVLSIEEVNRVIEAAGNFGSSDAISIRDTALLEFLYATGARISEAVG 173 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP--- 138 + E DL+ V G+ K RLVP+ + VR + ++M +RP Sbjct: 174 VKFEDIDLNES----------VVKLTGKGSKQ--RLVPIGGCA-VRALRNYMEKSRPELA 220 Query: 139 ---RRREPLWAVTDETM---RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQ 192 +R + R + V +A + P+ PHT RHS H++ Sbjct: 221 LKGKRELHTIFLNKRGSALSRQSAWEIVTQAG-ERAKLDKPLHPHTLRHSLATHLIAGGA 279 Query: 193 PRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDG 232 + +Q L GH + ++YT + + + Sbjct: 280 DVRTVQELLGHASVTTTQIYTHISPDALVEAYVMSHPRAK 319 >UniRef50_UPI0000D54C0A tyrosine recombinase n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D54C0A Length = 213 Score = 214 bits (546), Expect = 2e-54, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 79/219 (36%), Gaps = 19/219 (8%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMP----DQRHHMLFATLWNTGMRIGEARM 81 + + P L +V LL + P D R L+++G+R+ EA Sbjct: 6 SDPFESVQSPKIPETLPKALTPEDVEKLLSFQPKSKSDFRDKAFLELLYSSGLRVSEAVG 65 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITT-RPRR 140 + SF+ + V G+ K+ R++P+ + +E W++ + Sbjct: 66 VNLSSFESELSFVKV----------LGKGKKE--RMLPVGKFAK-EAIEKWLVEREHIAK 112 Query: 141 REPLWAVTDETMRNWLKQAVRRAEADGVHFS-IPVTPHTFRHSYIMHMLYHRQPRKVIQA 199 + R ++ R + PV+PH RHS+ H+L + IQ Sbjct: 113 DTNALFINKYGKRISIRAMQERIYNISIAQGLSPVSPHMLRHSFATHILESSGDLRSIQE 172 Query: 200 LAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEI 238 + GH + ++YT++ +A ++ Sbjct: 173 MLGHSSLSTTQIYTKLNFQQLAKIYDRSHPHGKKENKTN 211 >UniRef50_Q02C57 Phage integrase family protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q02C57_SOLUE Length = 303 Score = 214 bits (545), Expect = 3e-54, Method: Composition-based stats. Identities = 49/226 (21%), Positives = 83/226 (36%), Gaps = 23/226 (10%) Query: 16 LLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD--------QRHHMLFA 67 + GV L R + P + A +V++L+ + R +F Sbjct: 91 RFLLREGVVPLNVACLVRTPKAPKKLPEVMTADQVNSLIDGVGGVELERPHPARDRAIFE 150 Query: 68 TLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVR 127 L+ G+R+ E L E D +E RG+ K+ R VPL + + Sbjct: 151 LLYGCGIRVSELAGLNLEDID----------RTEGWLRVRGKGKKE--RQVPLPGQA-AQ 197 Query: 128 QMESWMITTRPRRREPLWAVTDETMRNWLKQA--VRRAEADGVHFSIPVTPHTFRHSYIM 185 +E ++ R +P V R + + + A + + PH+FRH+Y Sbjct: 198 SLERYLAERPVAREQPAVFVNHRRARLTTRGISGIVKLYATYLSNDPGIHPHSFRHAYAT 257 Query: 186 HMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 H+L + IQ L GH + + YT+V D+ A Sbjct: 258 HLLADGADLRAIQELLGHARLSTTQKYTQVSLTDLMAVYDKAHPKA 303 >UniRef50_Q49890 Tyrosine recombinase xerD n=54 Tax=Actinobacteria (class) RepID=XERD_MYCLE Length = 316 Score = 214 bits (545), Expect = 3e-54, Method: Composition-based stats. Identities = 52/244 (21%), Positives = 87/244 (35%), Gaps = 32/244 (13%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-------- 59 + + +A G+ R T P L EV ALL + Sbjct: 86 LIAVRGLHRFAVAEGLVDLDVARAVRPPTPGRRLPKSLTVDEVLALLESVGGESRADGPL 145 Query: 60 -QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLV 118 R+ L L++TG RI EA L + D + +G+ K RLV Sbjct: 146 VLRNRALLELLYSTGSRISEAVGLDVDDVD----------TQARTVLLQGKGGKQ--RLV 193 Query: 119 PLTDISYVRQMESWMITTRPRRRE--------PLWAVTDETMRNWLKQA--VRRAEADGV 168 P+ + V+ ++++++ R P + R + A V + A+ Sbjct: 194 PVGRPA-VQALDAYLVRGRSDLARRGPGMLATPAIFLNARGGRLSRQSAWQVLQDAAEHA 252 Query: 169 HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPF 228 + V+PH RHS+ H+L +V+Q L GH + ++YT V + A Sbjct: 253 GITSGVSPHMLRHSFATHLLEGGADIRVVQELMGHASVTTTQIYTLVTVQALREVWAGAH 312 Query: 229 TGDG 232 Sbjct: 313 PRAK 316 >UniRef50_D0SK93 Tyrosine recombinase XerC n=1 Tax=Acinetobacter junii SH205 RepID=D0SK93_ACIJU Length = 311 Score = 214 bits (545), Expect = 3e-54, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 81/237 (34%), Gaps = 33/237 (13%) Query: 12 ERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD---------QRH 62 E+ L P DF ++ P + V +L P R Sbjct: 94 EQGQYLQQNPSEDF-------KLKRQPRPLPGMVDIETVHQILDQAPPDKPIEQQLWLRD 146 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 + L+++G+R+ E + L + D + + G+ K R+VP Sbjct: 147 KAILELLYSSGLRLAELQGLMIKDIDFNRQLLRI----------TGKGNK--TRIVPFGQ 194 Query: 123 IS---YVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAE--ADGVHFSIPVTPH 177 + + ++ + I + ++ R +Q R + A ++ + PH Sbjct: 195 KAKDSLIEWLKIYRIWQGEFNLDSAVFISQRGNRLTPRQIENRVKLQAQRAGVNVDLHPH 254 Query: 178 TFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 RH + HML + +Q + GH + + ++YT V +A +D Sbjct: 255 LLRHCFASHMLSASGDLRSVQEMLGHSNLSTTQIYTHVDFDQLARVYDQTHPRAQKD 311 >UniRef50_A5EXM2 Tyrosine recombinase XerD n=1 Tax=Dichelobacter nodosus VCS1703A RepID=A5EXM2_DICNV Length = 297 Score = 213 bits (544), Expect = 3e-54, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 75/218 (34%), Gaps = 25/218 (11%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEAR 80 + P + +V ALL R + L+ G+R+ E Sbjct: 93 ENPMHFLGRTKIRRHLPQTMSESDVEALLSAPDVQTILGLRDRAMLELLYACGLRVSELV 152 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR- 139 LT LD G+ K+ RLVP +I++ ++ ++ RP+ Sbjct: 153 GLTLHQIALD----------VGYVQILGKGDKE--RLVPFGEIAH-EWLQRYIQEARPQL 199 Query: 140 ---RREPLWAVTDETM---RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQP 193 + V+ R ++ S ++PHT RH++ H+L H Sbjct: 200 LGQKMSDYVFVSQRGAALSRQAFWYRLKVYVCAVGLDSNKISPHTLRHAFASHLLAHGAD 259 Query: 194 RKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 + IQ L GH D + ++YT + + + Sbjct: 260 LRSIQMLLGHSDLSTTQIYTHIADQRLKSLFMKHHPRA 297 >UniRef50_B6YWN8 Probable tyrosine recombinase xerC-like n=9 Tax=Thermococcaceae RepID=XERCL_THEON Length = 282 Score = 213 bits (544), Expect = 3e-54, Method: Composition-based stats. Identities = 50/201 (24%), Positives = 83/201 (41%), Gaps = 29/201 (14%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMP--DQRHHMLFATLWNTGMRIGEARMLTPESFDLD 90 R + P L EV +L +P +R ++F L+ G+R+ E L D + Sbjct: 88 RPPKVPKSLPKSLTREEVRKILSVIPPTKKRDRLIFLLLYGAGLRVSELCNLKKSDVDFE 147 Query: 91 GVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR--------RRE 142 VR G+ KD R+VP+ + +++++ T RRE Sbjct: 148 RSLIIVRG---------GKGAKD--RVVPIPAF-LLEGIKAYLETRDDDSEYLIVEDRRE 195 Query: 143 PLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAG 202 ++ +T+ LK+ RA VTPH RHS+ HML + + IQ L G Sbjct: 196 RKDKLSPKTVWYLLKKYGDRAGI-------RVTPHMLRHSFATHMLENGVDIRAIQELLG 248 Query: 203 HRDPRSMEVYTRVFALDMAAT 223 H + + ++YT+V + Sbjct: 249 HSNLSTTQIYTKVTVEHLRKA 269 >UniRef50_A6KYQ9 Integrase n=60 Tax=Bacteria RepID=A6KYQ9_BACV8 Length = 313 Score = 213 bits (544), Expect = 3e-54, Method: Composition-based stats. Identities = 39/243 (16%), Positives = 88/243 (36%), Gaps = 24/243 (9%) Query: 2 NNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYM---- 57 + + + I A L + P + E+ L+ + Sbjct: 73 RSQARILSGIRSFYRFLIMEDYLKADPTELLESPQTGFKLPEVMTVEEIDLLIGSIDRST 132 Query: 58 -PDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVR 116 QR+ + TL++ G+R+ E L + E G+ K R Sbjct: 133 KEGQRNRAILETLYSCGLRVSELCNLKLSELYFE----------EGFIKVEGKGSKQ--R 180 Query: 117 LVPLTDISYVRQMESWMITTRPRRREPLW----AVTDET--MRNWLKQAVRRAEADGVHF 170 LVP++ + ++++ + + +P + +++ + + + + A + Sbjct: 181 LVPISPRA-IKEIRLYFTDRNLMKIKPGFEDFVFISNFGKNISRIMVFHIIKELAARIGL 239 Query: 171 SIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 ++PHTFRHS+ H+L + IQ + GH + E+YT + + + + Sbjct: 240 KKKISPHTFRHSFATHLLEGGANLRAIQCMLGHESIGTTEIYTHIDRNMLRSEIIEHHPR 299 Query: 231 DGR 233 + + Sbjct: 300 NIK 302 >UniRef50_A1VDD4 Tyrosine recombinase XerD subunit n=12 Tax=Desulfovibrionales RepID=A1VDD4_DESVV Length = 321 Score = 213 bits (544), Expect = 4e-54, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 76/226 (33%), Gaps = 22/226 (9%) Query: 17 LPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWN 71 + G A P L E++ +L R + ++ Sbjct: 105 FAVGEGELEADPALFLENPKLARNLPDVLTRDEMATILARPDLSDRLGFRDRTMLELMYA 164 Query: 72 TGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYV---RQ 128 G+R+ E L P FD V G+ K+ R+VP+ +S Sbjct: 165 AGLRVSELCALRPLDFD----------AQAGVVRVFGKGAKE--RIVPVHHVSCALVTAY 212 Query: 129 MESWMITTRPRRREPLWAVTDETM-RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHM 187 + W P + + + R + + V+R ++PHTFRHS+ H+ Sbjct: 213 LRDWRPAFSPVEPAMFLNRSGKGLSRQAVWKVVKR-HVAEAGIHKDISPHTFRHSFATHL 271 Query: 188 LYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGR 233 L + +Q L GH D + E+YT V A + R Sbjct: 272 LEGGADLRSVQLLLGHADISATEIYTHVQADRLRRIHNAHHPRTRR 317 >UniRef50_D1AIZ1 Integrase family protein n=2 Tax=Fusobacteriaceae RepID=D1AIZ1_SEBTE Length = 307 Score = 213 bits (544), Expect = 4e-54, Method: Composition-based stats. Identities = 40/219 (18%), Positives = 76/219 (34%), Gaps = 23/219 (10%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSAL-----LFYMPDQRHHMLFATLWNTGMRIGEAR 80 A L M P L +++ L + + R ++ L+++G+R E Sbjct: 102 ANKLIYVNMPKFEKELPTVLTKDDINKLRNVIDISKVTGIRDRLIIEFLYSSGLRSSELV 161 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR 140 L+ +L+ V G+ K+ V + + E ++ R Sbjct: 162 SLSELMINLEEREVRV----------LGKGNKER---VTFFSENARKWYEKYISAKRNEY 208 Query: 141 REP---LWAVTDETMRNWLK--QAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRK 195 + + V R + + + A+ + VTPH FRHS+ +L ++ + Sbjct: 209 KNYTPNIVFVNSRGERITTRSLRRLIADYAEKAGINKEVTPHVFRHSFATTLLNNKVDIR 268 Query: 196 VIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 +Q L GH + +VYT V + D Sbjct: 269 YLQELLGHSSISTTQVYTHVSKALLREIYIKAHPLADED 307 >UniRef50_D0U5Z8 Tyrosine recombinase XerD n=1 Tax=uncultured actinobacterium RepID=D0U5Z8_9ACTN Length = 311 Score = 213 bits (543), Expect = 4e-54, Method: Composition-based stats. Identities = 49/235 (20%), Positives = 74/235 (31%), Gaps = 32/235 (13%) Query: 15 SLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-----QRHHMLFATL 69 I + S P L EV+ +L + R L L Sbjct: 82 HRYLIEERLRPDNPTSGVDGVKVPSGIPKALSEDEVARILASVTGVDSFALRDRALLEFL 141 Query: 70 WNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQM 129 + TG RI EA L+ D++ ++ G+ K+ R+VP + + Sbjct: 142 YATGARISEACGLSLSDLDMES----------QLVRLFGKGSKE--RIVPFGSHAKA-AL 188 Query: 130 ESWM----------ITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHF---SIPVTP 176 E W+ R + R +QA R V+P Sbjct: 189 EEWLGAGGRTMLVSEQWAKRDHADAVFLGSRGTRLS-RQAAWRIVQKFAQIAEVGDEVSP 247 Query: 177 HTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 H RHS HML H +++Q L GH + +VYTRV + Sbjct: 248 HVLRHSCATHMLIHGADLRIVQELLGHASVSTTQVYTRVDNEVLFDMYKESHPRA 302 >UniRef50_B2U7W2 Tyrosine recombinase xerC n=58 Tax=cellular organisms RepID=XERC_RALPJ Length = 328 Score = 213 bits (542), Expect = 5e-54, Method: Composition-based stats. Identities = 41/224 (18%), Positives = 70/224 (31%), Gaps = 18/224 (8%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-----QRHHMLFATLWNTGMRIGEAR 80 A + R S P L + AL+ +P R + ++ G+R+ E Sbjct: 108 ANPVDGVRAPKSPKRLPKALSVEQAVALMEQLPGDDAETIRDRAVNELFYSCGLRLSELV 167 Query: 81 MLTPESFDLDGVRPFVRI-LSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR 139 L + L + G+ K R VP+ + + +W+ Sbjct: 168 SLDMRHVKAGAYESASWLDLEAREVQVLGKGSK--RRTVPVGTKAT-EALAAWLAVRAQL 224 Query: 140 -------RREPLWAVTDETMRNWLKQAVRRAEADG--VHFSIPVTPHTFRHSYIMHMLYH 190 ++ R +Q R + + V PH RHS+ HML Sbjct: 225 AKSDAAPEDAHALFLSPRGKRLAQRQIQLRMKRNAIAAGVPADVHPHVLRHSFATHMLQS 284 Query: 191 RQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 + +Q L GH S +VYT + +A + Sbjct: 285 SGDLRAVQELLGHASIASTQVYTSLDFQHLAKIYDQAHPRAKKK 328 >UniRef50_C4FX95 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FX95_9FIRM Length = 331 Score = 213 bits (542), Expect = 6e-54, Method: Composition-based stats. Identities = 46/223 (20%), Positives = 85/223 (38%), Gaps = 24/223 (10%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMP------DQRHHMLFATLWNTGMRIGEA 79 + L + P + E++ L + R ML L+ TGMR+ E Sbjct: 121 TNPMELVQYQVKKKTLPQFFYEQELTQLFDSLYKREDDAAWRDRMLLEVLYATGMRVSEL 180 Query: 80 RMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR 139 L+ E +L+ V G+ K+ R+VPL D + + + ++ RP+ Sbjct: 181 SELSLERLNLEVQLIRV----------LGKGNKE--RIVPLGDSAT-QAIRDYLSHLRPK 227 Query: 140 ---RREPLWAVTDETMRNWLKQAVRRAE--ADGVHFSIPVTPHTFRHSYIMHMLYHRQPR 194 P +TD+ +Q R + + ++ + PH RHS+ H+L Sbjct: 228 IDRNNSPYLLLTDKGAPMSPRQIRTRLKSLVEEQAMNLKIYPHKLRHSFATHLLNKGADL 287 Query: 195 KVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAE 237 + +Q L GH + S ++YT V + + + + Sbjct: 288 RTVQELLGHANLSSTQIYTHVTKDQLRSQYLKAHPRAKQAKQD 330 >UniRef50_C0QVM8 Site-specific recombinase XerD n=3 Tax=Brachyspira RepID=C0QVM8_BRAHW Length = 297 Score = 212 bits (541), Expect = 7e-54, Method: Composition-based stats. Identities = 43/224 (19%), Positives = 84/224 (37%), Gaps = 27/224 (12%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLF-----YMPDQRHHMLFATLWNTGMRIGEARM 81 + P L EV LL R +F ++++G+R+ E Sbjct: 86 NPTDNLEVIRLKRVLPESLTDTEVDDLLAVHNEKTDKGLRDKAIFELMYSSGLRVSEICS 145 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR---- 137 L + +G + G+ ++ R+VP+ D + + ++ ++ T+R Sbjct: 146 LKIDDIFFEGKYLKIC----------GKGKRE--RIVPINDRA-LDILQRYIQTSRVIMV 192 Query: 138 ---PRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPR 194 L D+ R + + V+ A + PHT RHS+ H++ H Sbjct: 193 KGKKTSELFLNFRGDKISRVGIWKIVKEAMK-KSKIEKNIYPHTLRHSFATHLIQHGADL 251 Query: 195 KVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEI 238 + +Q + GH D + E+YT V + + +A + A + Sbjct: 252 RAVQRMLGHSDITTTEIYTHVDSAHLKKQIAK-HPKHSKHARQN 294 >UniRef50_A6DTG9 Integrase/recombinase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DTG9_9BACT Length = 318 Score = 212 bits (541), Expect = 8e-54, Method: Composition-based stats. Identities = 36/232 (15%), Positives = 75/232 (32%), Gaps = 35/232 (15%) Query: 23 VDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP--------------DQRHHMLFAT 68 + + A + P L ++S LL R + Sbjct: 99 LQSTNPFQDIKAAKKDKSLPLILSREDISTLLSSPAPYWAQKKGKNNDFMASRDAAILEI 158 Query: 69 LWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQ 128 +++ G+RI EA + + +L+ + G+ K R L + + + Sbjct: 159 IYSGGLRIQEALDINFDQINLEESTLKI----------FGKGKKQ--RTAYLGNPAK-QA 205 Query: 129 MESWMITTR------PRRREPLWAVTDETMRNWLKQAVR--RAEADGVHFSIPVTPHTFR 180 +E + + +P++ + R + R +A +TPH R Sbjct: 206 LEQYFACRKNAELNWTSANDPVFINLKDLKRLSARSIQRNLKAYLQSCQLPPDITPHKLR 265 Query: 181 HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDG 232 HS+ H+L + +Q L GH + + ++YT + + Sbjct: 266 HSFATHLLDAGADLRSVQELLGHENLSTTQIYTHISTDRLLQAYDQAHPHAQ 317 >UniRef50_Q1G9V2 Tyrosine recombinase xerC n=28 Tax=Lactobacillus RepID=XERC_LACDA Length = 295 Score = 212 bits (541), Expect = 9e-54, Method: Composition-based stats. Identities = 46/236 (19%), Positives = 81/236 (34%), Gaps = 27/236 (11%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-----QRH 62 +S + G+ A ++ P + EV ++ + D R+ Sbjct: 73 LSSLKSFYRFLTRRGLVKADPTVAIQLRRGKKKLPEFFYQDEVGQVIRSLNDGKPLTVRN 132 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 + A + TGMR+ E L + DL+ V G+ KD R V Sbjct: 133 RAIVALFYATGMRLSELTDLKIKQLDLENGMILV----------HGKGNKD--RYVFFDQ 180 Query: 123 ISYVRQMESWMITTRPRRRE--------PLWAVTDETMRNWLKQAVRRAEADGVHFSIPV 174 S + +E ++ RP + L + + +AV++ + Sbjct: 181 ESK-KYLEEYLQAARPSLLKNEPDTGAVFLNKLGRPISSRGIAKAVQQI-FQKAGLTAGA 238 Query: 175 TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 PH RHS+ ML + + +Q L GH D + ++YT V + F Sbjct: 239 HPHELRHSFATAMLNNGADLRSVQELLGHEDLSTTQIYTHVSMQHLTVEYRQHFPR 294 >UniRef50_A8VRZ0 Putative helix-turn-helix protein, YlxM/p13 family protein n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VRZ0_9BACI Length = 303 Score = 212 bits (540), Expect = 1e-53, Method: Composition-based stats. Identities = 45/242 (18%), Positives = 85/242 (35%), Gaps = 34/242 (14%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRH 62 S + G P++L E+ A+ + R+ Sbjct: 80 LASLRSLWRFLEREGRIQLNPFLYVTTPKLDKKLPSFLYENEMQAIFDAIDTDSLLGARN 139 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 + L+ +G+R E L + DLD V G+ K+ R +P+ Sbjct: 140 LAIIELLYASGIRASECTGLKLKDIDLDLSTLLV----------MGKGKKE--RFLPVGS 187 Query: 123 ISYVRQMESWMITTRPR-----RREPLW------AVTDETMRNWLKQAVRRAEADGVHFS 171 + V + ++ + + +PL+ A+TD +R L + + A + Sbjct: 188 FA-VEALSLYLDKRTAKFGPHAQSDPLFINYRGGALTDRGLRKILAKVIEDA-----SLT 241 Query: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 +TPH RH++ HML + +Q L GH D ++ ++YT V + Sbjct: 242 SKLTPHVIRHTFATHMLNEGADLRTVQELLGHTDLKATQIYTHVTRDRLRDVYRHSHPRA 301 Query: 232 GR 233 + Sbjct: 302 KK 303 >UniRef50_C5TJ38 Tyrosine recombinase XerD n=5 Tax=Neisseriaceae RepID=C5TJ38_NEIFL Length = 293 Score = 212 bits (540), Expect = 1e-53, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 79/221 (35%), Gaps = 25/221 (11%) Query: 22 GVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRI 76 G + S P + ++ ALL R L ++ TG+R+ Sbjct: 87 GQRADNPTRFLKAPKSERKLPTLITEAQIDALLAAPDVETSHGLRDKALLEVMYATGLRV 146 Query: 77 GEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITT 136 EA LT DL G+ K +RLVPL + +E + + Sbjct: 147 TEAVKLTLSDIDLHR----------GSIRTIGKGDK--LRLVPLGQEA-AYWVERYCNES 193 Query: 137 RPRR------REPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYH 190 RP E + + L + + A+ + ++PH RH++ H++ H Sbjct: 194 RPLLLKNKICDEVFVSQKRSGISRQLAWMIVKEYAEAAGIA-SLSPHGLRHAFATHLVNH 252 Query: 191 RQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 + +Q + GH D + ++YT V + + + + Sbjct: 253 GVDLRSVQMMLGHSDINTTQIYTHVANIRLKNMVDEHHSRS 293 >UniRef50_C4L386 Tyrosine recombinase XerD n=3 Tax=Firmicutes RepID=C4L386_EXISA Length = 295 Score = 211 bits (539), Expect = 1e-53, Method: Composition-based stats. Identities = 45/239 (18%), Positives = 79/239 (33%), Gaps = 33/239 (13%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRH 62 +S GV + P EV LL +P R Sbjct: 75 VSSIRMFHHHLKMTGVTTTDPSLYLESPKAEKQLPDTWSQTEVERLLDSVPTSDPLSLRD 134 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 + L+ TGMR+ E L G+ G+ + R++P++ Sbjct: 135 RAMLELLYGTGMRVSE----------LLGLDLDDLQFELGYLQCEGKG--ERARIIPVSS 182 Query: 123 ISYVRQMESWMITTR----PRRREPLW------AVTDETMRNWLKQAVRRAEADGVHFSI 172 ++ +E ++ R R E L+ ++ + +K+ + A Sbjct: 183 VA-QSFVERYIQQARNGLGGRETEALFLNGRGGRLSRQGFWKMIKRRAKLA-----GIEK 236 Query: 173 PVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 +TPH RHS+ H+L + + IQ + GH D + +VYT V + Sbjct: 237 EITPHVLRHSFATHLLENGADLRAIQQMLGHADLATTQVYTHVNKSRLHDVYRKHHPRA 295 >UniRef50_D0W8E1 Tyrosine recombinase XerC n=2 Tax=Neisseria RepID=D0W8E1_NEILA Length = 334 Score = 211 bits (539), Expect = 1e-53, Method: Composition-based stats. Identities = 45/223 (20%), Positives = 76/223 (34%), Gaps = 21/223 (9%) Query: 22 GVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD------QRHHMLFATLWNTGMR 75 G+ A + P L ++ +L D R H LF ++ +G+R Sbjct: 125 GLMCADPTAGISPPKQPQRIPKALPQEWLNRMLDLPVDGGDPLAVRDHALFELMYGSGLR 184 Query: 76 IGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMIT 135 + E L + LD V G+ K R VPLT S +++++ Sbjct: 185 VSEIHGLNADDVYLDEAWVHV----------TGKGRKQ--RQVPLTGKS-AEALKNYLPL 231 Query: 136 TRPRRREPLWAVTDETMRNWLKQAVRRAEADGV--HFSIPVTPHTFRHSYIMHMLYHRQP 193 + R +Q +R V+PH RHSY H+L + Sbjct: 232 RQTASDGKALFTGRNGTRLSQRQIQKRLAQWAAINGDGRHVSPHMMRHSYAGHLLQASRD 291 Query: 194 RKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAA 236 + +Q L GH + ++YT++ +A R Sbjct: 292 IRAVQELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRQEK 334 >UniRef50_Q7ZAJ8 Tyrosine recombinase xerD n=13 Tax=Gammaproteobacteria RepID=XERD_SHEON Length = 300 Score = 211 bits (539), Expect = 1e-53, Method: Composition-based stats. Identities = 48/244 (19%), Positives = 91/244 (37%), Gaps = 34/244 (13%) Query: 3 NVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP---- 58 + L +S R + ++ + P L +V LL Sbjct: 74 SSARLLSSLRRFYNYLLQTKQISGDPMAQIESPKLSRHLPDSLSESQVDRLLAEPNVDDP 133 Query: 59 -DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRL 117 + R + L+ TG+R+ E LT E L + + G+ K+ RL Sbjct: 134 VECRDKAMLELLYATGLRVSELVGLTMEQMSL----------RQGLVRIIGKGGKE--RL 181 Query: 118 VPLTDISYVRQMESWMITTRPR-----RREPLWA------VTDETMRNWLKQAVRRAEAD 166 VP+ +++ +E ++ + R + + ++ +T +T + +K RA Sbjct: 182 VPMGEMAITE-VEHYLTSARHELLGHIQSDVVFPSKRSQMMTRQTFWHRIKLYASRA--- 237 Query: 167 GVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAV 226 ++PHT RH++ H+L H +V+Q L GH D + ++YT V + Sbjct: 238 --GIETELSPHTLRHAFATHLLNHGADLRVVQLLLGHSDLSTTQIYTHVARARLQELHQQ 295 Query: 227 PFTG 230 Sbjct: 296 HHPR 299 >UniRef50_Q8NNZ9 Tyrosine recombinase xerC n=13 Tax=Actinomycetales RepID=XERC_CORGL Length = 308 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 39/208 (18%), Positives = 71/208 (34%), Gaps = 25/208 (12%) Query: 34 MATSTGATPAYLLAPEVSALLFYMPD------QRHHMLFATLWNTGMRIGEARMLTPESF 87 T P L + + R + L+ TGMR+ E + Sbjct: 116 SPKITRDLPKILGEQQAGDFVENAASTNEEEFLRDSAILELLYATGMRVAELCGIDLSDI 175 Query: 88 DLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREP-LWA 146 D D V G+ K+ R+VP + ++ + + +W+ +P Sbjct: 176 DYDRKMVRV----------LGKGNKE--RVVPFGESAH-KALRNWLDVRDEMTEDPKALF 222 Query: 147 VTDETMR---NWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 V R +++ V RA V ++PH+ RH+ H+L + +Q L GH Sbjct: 223 VGVRGQRINARQVRRIVDRAA--KVTGVDHLSPHSLRHTAATHLLDGGADLRQVQELLGH 280 Query: 204 RDPRSMEVYTRVFALDMAATLAVPFTGD 231 ++ ++YT V + Sbjct: 281 SSMQTTQIYTHVSNKRLLEAFNKAHPRA 308 >UniRef50_B8FPN6 Tyrosine recombinase XerD n=2 Tax=Desulfitobacterium hafniense RepID=B8FPN6_DESHD Length = 322 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 38/240 (15%), Positives = 76/240 (31%), Gaps = 49/240 (20%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYMPD--------------------------- 59 P L +S L+ D Sbjct: 96 DPTEYLSTPKLEQHLPHVLSEGSISKLMGEGGDRDKEGPKPGKSSKKAGDSDSEGKDKGL 155 Query: 60 -QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLV 118 R+ + L+ G+R+ E L + RG+ K+ R+V Sbjct: 156 LMRNMAMIEVLYGCGLRVSELVGLKVSDIIFETRTL----------RCRGKGNKE--RIV 203 Query: 119 PLTDISYVRQMESWMITTR-----PRRREPLWAVTDETM--RNWLKQAVRRAEADGVHFS 171 P+ + + + +++++ R + E L+ + T R + +++ A Sbjct: 204 PIGEYA-LEVLQNYLEHDRERLRGKHKTEVLFLNSRGTALTRQGIWDILKK-WAQTHGVQ 261 Query: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 + PH FRHS+ H+L H + +Q + GH D + ++YT + + Sbjct: 262 ENIYPHKFRHSFATHLLDHGADLRSVQEMLGHADIATTQIYTHLSRQRLLEVFRKAHPRA 321 >UniRef50_C9RQE0 Integrase family protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQE0_FIBSS Length = 297 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 74/214 (34%), Gaps = 33/214 (15%) Query: 30 SLRRMATSTGATPAYLLAPEVSALLFYMPD----QRHHMLFATLWNTGMRIGEARMLTPE 85 S+ P YL E+ ++ + R L +++ G+RI EA + Sbjct: 99 SMLATPKLGHYLPQYLTREEIDSVFESAANGKNPLRDTALIELMYSGGLRISEALGIKLS 158 Query: 86 SFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRR---- 141 DL+ G+ K RLVPL + + +W+ RP Sbjct: 159 QIDLENEWLM----------PIGKGNKQ--RLVPLGSKAK-ENLRAWIEEGRPLTHPTTD 205 Query: 142 -----EPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 ++ ++ +H S V+PHTFRHS+ H L +V Sbjct: 206 NIILNAHGKPMSRMGAWKIVQ-------LHTMHLSKQVSPHTFRHSFATHCLEAGMDLRV 258 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 +Q L GH D + ++YT V + Sbjct: 259 LQELLGHADISTTQIYTHVDKDFIKQEHRSFHPR 292 >UniRef50_B2HX80 Site-specific recombinase XerC n=17 Tax=Acinetobacter RepID=B2HX80_ACIBC Length = 308 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 39/236 (16%), Positives = 82/236 (34%), Gaps = 33/236 (13%) Query: 12 ERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD---------QRH 62 E+ L I P DF ++ P + V+ +L R Sbjct: 91 EQGKYLEINPTDDF-------KLKRQPRPLPGMIDIETVNQILDQPMPEKPVDQQLWLRD 143 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 + L+++G+R+ E + LT + D + + G+ K R+VP Sbjct: 144 KAMLELLYSSGLRLAELQGLTIKDIDFNRQLVRI----------TGKGNK--TRIVPFGK 191 Query: 123 IS---YVRQMESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAE--ADGVHFSIPVTPH 177 + + ++ + I + ++ +Q +R + A ++ + PH Sbjct: 192 KAKESLLNWLKIYNIWKGHFDQNASVFISQRGGALTPRQIEKRVKLQAQRAGVNVDLHPH 251 Query: 178 TFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGR 233 RH + HML + +Q + GH + + ++YT + +A + Sbjct: 252 LLRHCFASHMLSSSGDLRSVQEMLGHSNLSTTQIYTHIDFDHLAQVYDQAHPRATK 307 >UniRef50_Q04F40 Tyrosine recombinase XerC subunit n=5 Tax=Leuconostocaceae RepID=Q04F40_OENOB Length = 307 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 40/243 (16%), Positives = 79/243 (32%), Gaps = 26/243 (10%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD------QR 61 +S I + + +S P +L EV L D R Sbjct: 78 ISSLRSFYHFLIENSLAKKNPFANIEFRSSNKKLPEFLYPAEVIEYLRAAADPQNDQYLR 137 Query: 62 HHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLT 121 + L L+ TGMRI E LT D + ++ G+ K R++P Sbjct: 138 NSALIELLYATGMRIFEITNLTFSQIDFNS----------QIVDITGKGKKQ--RIIPFG 185 Query: 122 DISYVRQMESWMITT-----RPRRREPLWAVTDETMRNW--LKQAVRRAEADGVHFSIPV 174 + ++ ++ + + + + + + + + + + Sbjct: 186 KPALAS-LKQYLPWREKTMQKFSEKHSYIFINTRGRQLTETGAEYILKQVSKRSKLTANI 244 Query: 175 TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 PH RHS+ H+L + + +Q L GH + ++YT + ++ F Sbjct: 245 HPHMLRHSFATHLLNNGADIRTVQELLGHASLSTTQIYTHITTENLQENYKKFFDRAKIR 304 Query: 235 AAE 237 E Sbjct: 305 HDE 307 >UniRef50_B0MY63 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MY63_9BACT Length = 298 Score = 211 bits (538), Expect = 2e-53, Method: Composition-based stats. Identities = 34/213 (15%), Positives = 73/213 (34%), Gaps = 21/213 (9%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYM-----PDQRHHMLFATLWNTGMRIGEAR 80 +T P L E+ ++ + +R + L++ G+R+ E Sbjct: 99 STPTQFIDTPKFGRHLPDILTVEEIDRIVAAVDTSTVKGRRDSAMLEVLYSCGLRVSELT 158 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR 140 L E G+ K RLVP++ + +++ ++ + Sbjct: 159 SLRLGDLFF----------GEGYIRVTGKGDKQ--RLVPVSGAAR-EKIQRYLDDRATKT 205 Query: 141 R-EPLWAVTDETMR--NWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVI 197 + + + + + + R ++PHTFRHS+ H+L + + Sbjct: 206 SASDVVFLNNRGTQLTRVMVFTILREAVHRAGIDKHISPHTFRHSFATHLLEGGASIRQV 265 Query: 198 QALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 Q + GH + E+YT + + T+ Sbjct: 266 QEMLGHESILTTEIYTHLEGDHLRDTVEKYLPL 298 >UniRef50_C4LJB1 Integrase/recombinase n=3 Tax=Corynebacterium RepID=C4LJB1_CORK4 Length = 327 Score = 211 bits (537), Expect = 2e-53, Method: Composition-based stats. Identities = 39/230 (16%), Positives = 75/230 (32%), Gaps = 35/230 (15%) Query: 22 GVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP---------DQRHHMLFATLWNT 72 G+ + S P L A + + +L + R + ++ T Sbjct: 113 GIVQSDPASRLSSPRPDKTLPRVLAADQTAEILHNLEVGAEEEDPIALRDLAMVEFMYGT 172 Query: 73 GMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESW 132 G+R+ E L D + G+ K R+VP + + ++ W Sbjct: 173 GVRVSELCRLNIGDLDFARQTVTI----------LGKGNKQ--RVVPFGESA-AHALKRW 219 Query: 133 MITTRP--------RRREPLWAVTDETMR---NWLKQAVRRAEADGVHFSIPVTPHTFRH 181 + RP + + + R ++ V +A + V+PH RH Sbjct: 220 IDIGRPAIAANGHHKDADEAVFLGKRGGRIDPRQVRTVVHQATSTVSG--GDVSPHALRH 277 Query: 182 SYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 S +L +V+Q + GH + ++YT V + + A Sbjct: 278 SAATDVLEGGADLRVVQEMLGHASLATTQIYTHVDSERLKAVFNQAHPRA 327 >UniRef50_C5V602 Tyrosine recombinase XerC n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V602_9PROT Length = 317 Score = 210 bits (536), Expect = 3e-53, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 71/216 (32%), Gaps = 19/216 (8%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLF----YMPDQRHHMLFATLWNTGMRIGEARML 82 R S A P L + ++ R +F +++G+R+ E L Sbjct: 112 NPCVGLRAPKSARALPQVLSPDQAVRMVDLPTDAPDSIRDKAMFELFYSSGLRLMELIDL 171 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR-- 140 ES D VR+ G+ K R+VPL + + + W+ Sbjct: 172 DAESIRSDITAGEVRVT--------GKGHK--TRIVPLGGCA-ISALHEWLAVRPTLANI 220 Query: 141 REPLWAVTDETMR--NWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQ 198 E V R + Q + + V PH RHS+ H+L + +Q Sbjct: 221 GERALFVGARGARISPRVVQLRMKQWGIKQGITSSVHPHMLRHSFATHVLQSSGDLRAVQ 280 Query: 199 ALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 + GH + +VYT + ++ R Sbjct: 281 EMLGHASISTTQVYTHLDFQYLSKIYDAAHPRAKRK 316 >UniRef50_Q1RHT1 Tyrosine recombinase xerD n=18 Tax=Rickettsieae RepID=XERD_RICBR Length = 305 Score = 210 bits (536), Expect = 3e-53, Method: Composition-based stats. Identities = 37/222 (16%), Positives = 80/222 (36%), Gaps = 24/222 (10%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLF------YMPDQRHHMLFATLWNTGMRIGEAR 80 L + P L ++ +LL R + + L+ +G+R+ E Sbjct: 91 NPLLNIDLPKYQNKLPEILSIDDIKSLLEYCSQDISPEGARLNAMIHLLYASGLRVSELV 150 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITT---- 136 L + V +K+ + G+ K+ R++ + + + + + +++ Sbjct: 151 SLKLSDI----LSNKVSREVKKIFSVLGKGNKE--RIIVINEPA-INSLVKYLVVRDNFV 203 Query: 137 ---RPRRREPLWAVTDETM---RNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYH 190 +P+ L+ + R ++ A ++PH RHS+ H+L Sbjct: 204 NKTKPKNLIYLFPSSAAAGYMTRQNFAILLKSAALYAGLNPEHISPHVLRHSFASHLLEG 263 Query: 191 RQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDG 232 +VIQ L GH D + ++YT + + L + Sbjct: 264 GADLRVIQELLGHADISTTQIYTHLQTNHLKKAL-LHHPLSK 304 >UniRef50_Q7ZAK0 Tyrosine recombinase xerC n=4 Tax=Corynebacterium RepID=XERC_COREF Length = 310 Score = 210 bits (536), Expect = 3e-53, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 69/208 (33%), Gaps = 25/208 (12%) Query: 34 MATSTGATPAYLLAPEVSALLFYMPD------QRHHMLFATLWNTGMRIGEARMLTPESF 87 T P L + + +R + L+ TGMR+ E L Sbjct: 118 SPKVTRNLPRVLGEVQAGEFMGSAAADTEDEFRRDSAILELLYATGMRVSELCGLDLGDV 177 Query: 88 DLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITT-RPRRREPLWA 146 D V G+ K+ R++P + +E W+ R + E Sbjct: 178 DHHRRMVRV----------LGKGDKE--RMIPFG-KAAADALEQWLEARDRMAKVEDAMF 224 Query: 147 VTDETMR---NWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 V R +++ V R + ++PH+ RH+ H+L + +Q + GH Sbjct: 225 VGVRGGRIDARQIRRIVDRTAQVAG--ADHLSPHSLRHTAATHLLDGGADLRQVQEMLGH 282 Query: 204 RDPRSMEVYTRVFALDMAATLAVPFTGD 231 ++ ++YT V + + Sbjct: 283 SSLQTTQIYTHVSSQRLLEAFRQAHPRA 310 >UniRef50_C6LGQ0 Tyrosine recombinase XerD n=3 Tax=Clostridiales RepID=C6LGQ0_9FIRM Length = 304 Score = 210 bits (536), Expect = 3e-53, Method: Composition-based stats. Identities = 36/221 (16%), Positives = 75/221 (33%), Gaps = 35/221 (15%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALL-----FYMPDQRHHMLFATLWNTGMRIGEAR 80 + TP L E LL R + L+ TGMR+ E Sbjct: 102 EDPSDNLKAPHVEKKTPEILTLEETVQLLNQPELDSAKGIRDKAMLELLYATGMRVSELI 161 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR--- 137 + ++ R D+ R++P + + ++ ++ +R Sbjct: 162 SMKLTDVNMAMGYVLCRDS-------------DKERVIPFGTEA-EKALKRYLEESRSVL 207 Query: 138 --PRRREPLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLY 189 + E L+ +++ + +K +A + +TPHT RHS+ H++ Sbjct: 208 LKGKESEFLFVNCSGKSMSRQGFWKIIKFYSAQA-----GITKDITPHTLRHSFGAHLVQ 262 Query: 190 HRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 + + +Q + GH D + ++Y + + A Sbjct: 263 NGADLRAVQEMMGHSDISTTQIYMDMNVRRVREIYAKAHPR 303 >UniRef50_C5RBD8 Integrase/recombinase n=1 Tax=Weissella paramesenteroides ATCC 33313 RepID=C5RBD8_WEIPA Length = 308 Score = 210 bits (535), Expect = 4e-53, Method: Composition-based stats. Identities = 43/245 (17%), Positives = 80/245 (32%), Gaps = 37/245 (15%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLF------YMPDQR 61 +S I + + P Y E++ + R Sbjct: 82 VSSLRSFYRFLINNEMVAENPFVGIVLKKPGQHLPRYFYQKELTKMFDVVMTDQSALGLR 141 Query: 62 HHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLT 121 +H+L L+ TG R+ E +T ++ D + G+ K R+VP Sbjct: 142 NHLLLEMLYGTGARVSEIANMTLQNVDSHARVVTI----------TGKGNK--TRIVPFG 189 Query: 122 DISYVRQMESWMITTRP-------------RRREPLWAVTDETMRNWLKQAVRRAEADGV 168 + + ++ T RP + VT + LKQ ++ Sbjct: 190 RYA-ADALAKYLKTGRPVLASKQADTSNKLFLNQRGAPVTTAGIEYILKQIGKK-----S 243 Query: 169 HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPF 228 + VT H FRH++ +L ++ + +Q L GH + ++YT V + + F Sbjct: 244 GLTQEVTAHMFRHTFATDLLNNQADLRTVQQLLGHSSLSTTQIYTHVTTDALQKSYRNFF 303 Query: 229 TGDGR 233 Sbjct: 304 PRASE 308 >UniRef50_A0L875 Tyrosine recombinase XerD subunit n=2 Tax=Proteobacteria RepID=A0L875_MAGSM Length = 296 Score = 210 bits (535), Expect = 4e-53, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 83/235 (35%), Gaps = 26/235 (11%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRH 62 ++ R+ + G+ P L E ALL+ R Sbjct: 75 LSAMRRLFRHLVDKGIRSEDPTGGVYRPKPQRKLPNTLSEAETEALLYAPDTSTELGMRD 134 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 + ++ TG+R+ E LT + D + V G+ K+ R+VP+ + Sbjct: 135 AAMLELMYATGLRVSELVTLTLDGLDEENGFVRVI----------GKGNKE--RIVPMGE 182 Query: 123 ISYVRQMESWMITTR----PRRREPLWAVTDETM---RNWLKQAVRRAEADGVHFSIPVT 175 + + + + R R +++ R+ V+R A + P++ Sbjct: 183 AATEMVIR-YRHSARQVLLKGGRCNDLFLSNRGAAMTRHNFWHIVKRY-AYEANIMKPLS 240 Query: 176 PHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 PH RH++ H+L H + +Q + GH D + E+YT V + Sbjct: 241 PHGIRHAFATHLLNHGADLRAVQMMLGHADISTTEIYTHVANARLKKLHDQLHPR 295 >UniRef50_B1ZW75 Integrase family protein n=2 Tax=Verrucomicrobia RepID=B1ZW75_OPITP Length = 324 Score = 210 bits (535), Expect = 4e-53, Method: Composition-based stats. Identities = 42/222 (18%), Positives = 73/222 (32%), Gaps = 28/222 (12%) Query: 25 FATALSLRRMATSTGATPAYLLAPEVSALL------------FYMPDQRHHMLFATLWNT 72 + P +L ++ LL R ++ L+ Sbjct: 116 QRNPFLGVPLPKLEKRLPKFLTEEQMVRLLAGPQQLLASESIDAFTAHRDRLVLELLYGA 175 Query: 73 GMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESW 132 G+R+ E L + DL+ V G+ K+ RL P+ ++ V + + Sbjct: 176 GLRVSELTGLNYGAIDLEA----------GVARIVGKGRKE--RLCPIGRVA-VAVLRKF 222 Query: 133 MITTRPRRR-EPLWAVTDETMRNWLK--QAVRRAEADGVHFSIPVTPHTFRHSYIMHMLY 189 P + VT R + Q + + + +TPH RHSY H+L Sbjct: 223 RDEFAPATAPDAPVIVTQRGTRMSPREVQLMLKRYLALAELPMDLTPHKLRHSYATHLLN 282 Query: 190 HRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 +++Q L GH + +VYT V + A Sbjct: 283 AGADLRLVQELLGHAQLATTQVYTHVSVARLKEIYAKAHPRA 324 >UniRef50_Q1LSD3 Tyrosine recombinase XerC subunit n=48 Tax=Proteobacteria RepID=Q1LSD3_RALME Length = 369 Score = 210 bits (535), Expect = 4e-53, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 79/229 (34%), Gaps = 20/229 (8%) Query: 25 FATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-----QRHHMLFATLWNTGMRIGEA 79 + + R P L AL+ + D R +F +++G+R+ E Sbjct: 119 QSNPVDGVRAPKRGRPLPKALSVEHAVALVAHRQDDTNESLRDQAVFELFYSSGLRLSEL 178 Query: 80 RMLTPE-SFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITT-- 136 L + D D L G+ R VP+ + ++ +++W+ Sbjct: 179 IQLDVRYTEDGDYRSSGWLDLDGAEVTVLGKGS--RRRTVPVGSKA-IQALKAWIHVREM 235 Query: 137 --RPR---RREPLWAVTDETMRN---WLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHML 188 RP + R ++Q ++R +A V PH RHS+ HML Sbjct: 236 MLRPGALPEDAHALFLGTRGRRLPISTVQQRIKR-QALAAGVPSDVHPHMLRHSFATHML 294 Query: 189 YHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAE 237 + +Q + GH + ++YT + +A GR + Sbjct: 295 QSSGDLRAVQEMLGHASISTTQIYTSLDFQHLAKVYDQAHPRAGRASKS 343 >UniRef50_D1W8B5 Putative tyrosine recombinase XerD n=1 Tax=Prevotella buccalis ATCC 35310 RepID=D1W8B5_9BACT Length = 321 Score = 210 bits (535), Expect = 4e-53, Method: Composition-based stats. Identities = 39/220 (17%), Positives = 80/220 (36%), Gaps = 24/220 (10%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSAL-----LFYMPDQRHHMLFATLWNTGMRIGEAR 80 L P L EV + L QR+ + L++ G+R+ E Sbjct: 98 QDPTELLESPRLGEHLPEVLSTEEVDMIENSIDLSKPEGQRNKAIIEVLFSCGLRVSELV 157 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQ----MESWMITT 136 L + LD V G+ K+ RLVP++ + ++ ++ Sbjct: 158 NLQLSNLYLDEGFIRV----------TGKGNKE--RLVPISPKAIKELNLWFLDRNLMKI 205 Query: 137 RPRRREPLWAVTDETMR--NWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPR 194 +P ++ ++ + + + + +A ++PHT RHS+ +L Sbjct: 206 KPGEQDYVF-LNRRGAHLTRTMILIMLKRQAQEAGIQKTISPHTLRHSFATELLKGGADL 264 Query: 195 KVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 + IQ + GH + E+YT + + + + + +D Sbjct: 265 RAIQVMLGHESIGTTEIYTHIDTTTLREEILLHHPRNAKD 304 >UniRef50_Q5WFP9 Site-specific tyrosine recombinase n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WFP9_BACSK Length = 300 Score = 209 bits (534), Expect = 4e-53, Method: Composition-based stats. Identities = 44/237 (18%), Positives = 84/237 (35%), Gaps = 27/237 (11%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRH 62 ++ + G + P +L E+ L +P ++R Sbjct: 78 LSALRSFGKFLMEEGHISENPFLHTHLPKQKTRLPTFLYEEEMEHWLLALPANKPLEKRD 137 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 + L+ TGMR+ E ML + +D + G+ K+ R VP+ Sbjct: 138 KAIIELLYATGMRVSECSMLALDQWD----------RVSETVRVFGKGRKE--RYVPVGK 185 Query: 123 ISYVRQMESWMITTRPRRREPL-----WAVTDETMR---NWLKQAVRRAEADGVHFSIPV 174 ++ V +ES++ RP+ + +++ V + D + Sbjct: 186 MA-VSAVESYIHEARPKLLRANDPTSHLFLNYRGGALSDRSIRKIVEK-RLDEAAMQKKI 243 Query: 175 TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 +PH RHS+ H+L + +Q L GH+ ++ +VYT V + A Sbjct: 244 SPHAIRHSFATHLLNAGADLRAVQELLGHQSLKTTQVYTHVSKERLYAVYKGAHPRA 300 >UniRef50_B9XMB7 Integrase family protein n=1 Tax=bacterium Ellin514 RepID=B9XMB7_9BACT Length = 306 Score = 209 bits (534), Expect = 5e-53, Method: Composition-based stats. Identities = 50/242 (20%), Positives = 89/242 (36%), Gaps = 37/242 (15%) Query: 5 IPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALL-----FYMPD 59 I + + + ++ A +LSL P L E++ LL Sbjct: 85 IAALRAFYKFAENEKILPLNIAESLSL---PRRWKRLPKALSDLEITQLLTLEIPETPRT 141 Query: 60 QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVP 119 + + +G+R+ E R + E L+ V G+ K+ R+VP Sbjct: 142 LGDQAVLELAYASGLRLAELRNIRMEQLHLEVGFINVI----------GKGNKE--RVVP 189 Query: 120 LTDISYVRQMESWMITTRPR----RREPLWAVTDET-------MRNWLKQAVRRAEADGV 168 + + V+ ++ ++ + RP+ R +T + +K V+R Sbjct: 190 VGSKA-VQALQRYLESGRPKLVTPRSPANVFLTMRGTPFAAVTLWKRIKDRVKR-----S 243 Query: 169 HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPF 228 + VTPH RHS+ H+L H +VIQ L GH + + E+YT V + Sbjct: 244 GVARNVTPHMLRHSFATHLLEHGADLRVIQELLGHANISTTEIYTHVSGSRLREVHRKFH 303 Query: 229 TG 230 Sbjct: 304 PR 305 >UniRef50_D2MLX1 Phage integrase, N-terminal SAM domain protein n=1 Tax=Bulleidia extructa W1219 RepID=D2MLX1_9FIRM Length = 297 Score = 209 bits (534), Expect = 5e-53, Method: Composition-based stats. Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 21/216 (9%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYM-----PDQRHHMLFATLWNTGMRIGEAR 80 +S + ++ P YL +V LL R+ + L+ G+RI E Sbjct: 95 HNPMSSFKNVKTSRPLPEYLTVDQVQDLLDSFDLEDKKGLRNRCIVELLYACGLRISECA 154 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMIT-TRPR 139 + + V G+ K+ R+VP + ++ Sbjct: 155 NIKIQDIHFRDYYVRV----------MGKESKE--RIVPFYKE-LGDLLTKYLKKYGSFS 201 Query: 140 RREPLWAVTDETMRNWLK--QAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVI 197 + + + ++ Q + + + + PH RHS+ H+L + +++ Sbjct: 202 QLSDPFFKGSKGKAISVRSIQLLLEKKGRELKLPFQLHPHVLRHSFATHLLDNGADLRIV 261 Query: 198 QALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGR 233 Q+L GH + + ++YT V + +A + Sbjct: 262 QSLLGHENLSTTQIYTHVSQDTLRRVIAETHPLSHK 297 >UniRef50_C5AC95 Tyrosine recombinase XerD n=82 Tax=cellular organisms RepID=C5AC95_BURGB Length = 341 Score = 209 bits (533), Expect = 6e-53, Method: Composition-based stats. Identities = 49/216 (22%), Positives = 79/216 (36%), Gaps = 26/216 (12%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARM 81 A PA L +V ALL R + ++ +G+R+ E M Sbjct: 139 DPTLRLLSAKQPARFPATLSEAQVEALLAAPEVGTALGLRDRTMLELMYASGLRVSELVM 198 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR-- 139 L L+ V G+ K+ RLVP ++++ +E ++ RP Sbjct: 199 LKTVEVGLND----------GVVRVMGKGSKE--RLVPFGEVAHG-WIERYLREARPALL 245 Query: 140 --RREPLWAVTDET---MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPR 194 R VT R ++R A ++PHT RH++ H+L H Sbjct: 246 GARTSDALFVTARGEGMTRQQFWNIIKR-HAMRAEIRAHLSPHTLRHAFATHLLNHGADL 304 Query: 195 KVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 +V+Q L GH D + ++YT V + A Sbjct: 305 RVVQMLLGHSDISTTQIYTHVARERLRTLHAAHHPR 340 >UniRef50_Q0ACL7 Tyrosine recombinase XerC n=4 Tax=Gammaproteobacteria RepID=Q0ACL7_ALHEH Length = 304 Score = 209 bits (533), Expect = 7e-53, Method: Composition-based stats. Identities = 47/235 (20%), Positives = 79/235 (33%), Gaps = 22/235 (9%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-----QRH 62 +S + + G P L E + LL P+ R Sbjct: 77 LSSLRSLFRYLVREGRLTGNPAEGVAAPRRPRRLPGVLSPDEAARLLEGSPEDDPLALRD 136 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 L+ ++++G+R+ EA L DL +E + G+ K R VP+ Sbjct: 137 RALYELIYSSGLRLAEAVGLDLGRLDL----------TEGLVEVVGKGAK--TRRVPVGG 184 Query: 123 ISYVRQMESWMITTRP--RRREPLWAVTDETMRNWLKQAVRRAEADG--VHFSIPVTPHT 178 + +++W+ EP V+ R + R PV PH Sbjct: 185 KAR-EALQAWLAVRPALAGADEPAVFVSQRGGRLSARSVQARLARLATLSGVGRPVHPHM 243 Query: 179 FRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGR 233 RHS+ H+L + +Q L GH D + +VYT + +A + Sbjct: 244 LRHSFASHLLESSGDLRAVQELLGHADIATTQVYTHLDFQHLARVYDQAHPRARK 298 >UniRef50_A9FAZ0 Integrase/recombinase n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FAZ0_SORC5 Length = 358 Score = 208 bits (531), Expect = 1e-52, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 70/223 (31%), Gaps = 26/223 (11%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLF-----YMPDQRHHMLFATLWNTGMRIGEARM 81 A + + P +L + ++ R + TL+ G+R+ E Sbjct: 144 NAAAQLALPKVRRPLPTFLDVDAAAEVMEIPGAETAEGLRDRAMLETLYGAGLRVSELCG 203 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR---- 137 L D R G+ K+ R+VPL + +E ++ Sbjct: 204 LDLTHVDR-------RPADRAAVRVVGKGDKE--RIVPLGSHALA-AIERYLERRDELAD 253 Query: 138 ---PRRREPLWAVTDETMRNWLKQ---AVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHR 191 R ++ R +++ V+R A G + PH RH+ H+L Sbjct: 254 PTTGARDPRALFLSRRGARIGVRRVQALVQRYGALGAG-RADLHPHALRHTCATHLLDGG 312 Query: 192 QPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 + IQ L GH + + YT V + + Sbjct: 313 ADLRAIQKLLGHASLATTQRYTHVSIDHLLKVYDAAHPMARKR 355 >UniRef50_D2Q591 Integrase/recombinase (XerD/RipX family) n=10 Tax=Bifidobacterium RepID=D2Q591_9BIFI Length = 318 Score = 208 bits (531), Expect = 1e-52, Method: Composition-based stats. Identities = 44/261 (16%), Positives = 78/261 (29%), Gaps = 43/261 (16%) Query: 2 NNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP--- 58 + S ++ V + + P L EV L+ +P Sbjct: 71 RSKARRLASIHAFHRFALSEHVVHDDVAAQVKAPKGASTLPDVLSVDEVMRLMDSIPLSR 130 Query: 59 -----------------DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSE 101 R L ++ TG R+ EA + L + Sbjct: 131 HHDGKQGHGDAAADDPVMLRDKALLEFMYATGSRVSEACGV----------DLDDIDLDD 180 Query: 102 KVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP--------RRREPLWAVTDETMR 153 KV G+ K RLVP+ + + ++ RP + R Sbjct: 181 KVARLMGKGSKQ--RLVPVGSFAC-EALRRYLRFGRPVLQSKSKGAAEHRAVFLNKRGKR 237 Query: 154 NWLKQA--VRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEV 211 + + R + H + P+ PHT RHS+ H++ + +Q L GH + ++ Sbjct: 238 LSRQSVWEIIRTAGERAHITKPLHPHTLRHSFATHLIQGGADVRTVQELLGHASVTTTQI 297 Query: 212 YTRVFALDMAATLAVPFTGDG 232 YT V ++ Sbjct: 298 YTHVSPENLIEAYLTAHPRAR 318 >UniRef50_A2U2P8 Phage integrase family protein n=1 Tax=Polaribacter sp. MED152 RepID=A2U2P8_9FLAO Length = 385 Score = 208 bits (530), Expect = 1e-52, Method: Composition-based stats. Identities = 49/208 (23%), Positives = 90/208 (43%), Gaps = 22/208 (10%) Query: 34 MATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVR 93 + P+ L EV ++ + +H + A L++ G+RI E L + F ++ + Sbjct: 182 RPKKSKKLPSVLSQEEVLRIISVTTNLKHRAIIALLYSCGLRISELINLKLKDFHIERKQ 241 Query: 94 PFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR----REPLWAVTD 149 V+ G+ KD R V L + S++ ++++ + P+ + Sbjct: 242 LIVKS---------GKGRKD--RYVSLAE-SFMPLLKNYYYSYEPKEFFVEGMNGEKYSA 289 Query: 150 ETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSM 209 ++R +LK++ ++A VTPHT RHSY H+L + + IQ+L GH P + Sbjct: 290 SSVRAFLKKSCKKA-----GIQRAVTPHTLRHSYATHLLENGVDIRYIQSLLGHSRPETT 344 Query: 210 EVYTRVFALDMAATLAVPFTGDGRDAAE 237 +YT V D+ P + A Sbjct: 345 MIYTHVKRKDLMQI-QNPLDVALQKVAS 371 >UniRef50_C5SKT5 Integrase family protein n=1 Tax=Asticcacaulis excentricus CB 48 RepID=C5SKT5_9CAUL Length = 304 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 46/242 (19%), Positives = 79/242 (32%), Gaps = 28/242 (11%) Query: 10 SPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD------QRHH 63 + + + G+ A P L EV AL+ R Sbjct: 76 AVRQFYRFCVREGLSDNDPSRKIAAAKKGRPLPKILSRQEVDALIAAADAKDAHQATRLQ 135 Query: 64 MLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDI 123 L + +GMR+ E L ++ D V +G+ + RLVPL Sbjct: 136 CLIEIAYASGMRVSEIVALRLDAVQKDPAYLIV----------KGKGGTE--RLVPLNPS 183 Query: 124 SYVRQMESWMITTR-----PRRREPLWAVTDET----MRNWLKQAVRRAEADGVHFSIPV 174 + ++ ++ + P + R + Q + A + V Sbjct: 184 ARA-AIKDYLDIRPLFLNAKDKANPYLFCSRGAEGHLTRRRVGQLLDEAALEAGIDPARV 242 Query: 175 TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 +PH RH++ H+L +V+Q L GH D + +VYT V + + R Sbjct: 243 SPHVLRHAFATHLLEGGADLRVVQTLLGHADISTTQVYTHVATERLKEVVETHHPLSKRR 302 Query: 235 AA 236 A Sbjct: 303 AG 304 >UniRef50_C4L615 Integrase family protein n=2 Tax=Exiguobacterium RepID=C4L615_EXISA Length = 293 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 41/208 (19%), Positives = 72/208 (34%), Gaps = 24/208 (11%) Query: 34 MATSTGATPAYLLAPEVSALLFYMPDQ-------RHHMLFATLWNTGMRIGEARMLTPES 86 + P + + EV LL Q R + L+ TG+R+ E + S Sbjct: 98 SPKKKQSLPTFAVPTEVEQLLEAASRQDDPFLQARDVAIIEVLYGTGIRVAELCGMNLSS 157 Query: 87 FDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP--RRREPL 144 FD V G+ K+ R VP+ + V+ ++ ++ + E Sbjct: 158 FDEVLSFVHV----------MGKGKKE--RYVPIGQYA-VQALQRYIELRKGVGLPTETA 204 Query: 145 WAVTDETMRNWLKQ--AVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAG 202 ++ + R Q V + P+TPH+ RHS+ +L + +Q L G Sbjct: 205 LFLSQKGNRMTTDQIRYVMKRLRKDSGVHKPLTPHSLRHSFATDLLERGADLRAVQELLG 264 Query: 203 HRDPRSMEVYTRVFALDMAATLAVPFTG 230 H + YT V + + Sbjct: 265 HESLSTTGRYTHVSTERLRSIYQATHPR 292 >UniRef50_B9YCM7 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YCM7_9FIRM Length = 304 Score = 208 bits (529), Expect = 2e-52, Method: Composition-based stats. Identities = 43/211 (20%), Positives = 78/211 (36%), Gaps = 22/211 (10%) Query: 24 DFATALSLRRMATSTGATPAYLLAPEVSALL----FYMPDQRHHMLFATLWNTGMRIGEA 79 D T + P Y E+ ++ D R H + L+ G+R+ E Sbjct: 90 DELDPAEYLEQLQRTQSLPVYCTRDEIEKIMAQFGHSPKDIRWHAIAELLYGCGLRVSEC 149 Query: 80 RMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP- 138 LT DL+ + G+ K+ RLVP+ + ++ + ++ T RP Sbjct: 150 AALTMNQVDLELGMLRIW----------GKGNKE--RLVPMPKQT-IKIVREYVDTVRPL 196 Query: 139 --RRREPLWAVTDETMRNWLKQA--VRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPR 194 ++ +T + + ++ P+TPH RH+Y HML Sbjct: 197 YQKKPTSWLFITRLGKKTTTASIESMIKSVCIQAGIQKPITPHKLRHTYATHMLEGGADL 256 Query: 195 KVIQALAGHRDPRSMEVYTRVFALDMAATLA 225 + +Q L GH D + ++YT + + Sbjct: 257 RSVQELLGHSDITTTQIYTHIDRSRLRTAYD 287 >UniRef50_Q1IMN8 Tyrosine recombinase XerD subunit n=3 Tax=Bacteria RepID=Q1IMN8_ACIBL Length = 313 Score = 208 bits (529), Expect = 2e-52, Method: Composition-based stats. Identities = 45/229 (19%), Positives = 74/229 (32%), Gaps = 34/229 (14%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----------DQRHHMLFATLWNTGM 74 P L A EV L P R + + + Sbjct: 97 HDPTLNIESPRQWKVLPKSLSADEVLQTLQGPPRVLDTKESQALALRDRAMLEVFYAGAL 156 Query: 75 RIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMI 134 R+ E + E LD VR G+ K+ R+VPL + V ++S++ Sbjct: 157 RVSEMIGVRMEDAKLDLGYMMVR----------GKGDKE--RIVPLGQSALV-AVKSYLE 203 Query: 135 TTR----PRRREPLWAVT---DETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHM 187 + R + P+ V + R + Q V A +PH RHS HM Sbjct: 204 SGREVLCAGKTSPILFVGKGCRKLSRQRVWQMVSAASQAS---GRHASPHMLRHSCATHM 260 Query: 188 LYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAA 236 + + + +Q + GH D + ++YT + + R A Sbjct: 261 VENGADLRTVQTILGHADISTTQIYTHLALDRLKQVHRTFHPRSKRRNA 309 >UniRef50_B8IZE7 Integrase family protein n=5 Tax=Desulfovibrionales RepID=B8IZE7_DESDA Length = 373 Score = 208 bits (529), Expect = 2e-52, Method: Composition-based stats. Identities = 55/237 (23%), Positives = 86/237 (36%), Gaps = 23/237 (9%) Query: 2 NNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQR 61 NV +P + P A VD AL P A E +L R Sbjct: 156 ENVAAQVRNPRQEKRHPRALNVDETFALLDSATGPGGKRGPVAGSAEE-ERILC-----R 209 Query: 62 HHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLT 121 L L+ +G+RI EA L + L V G+ ++ RL PL+ Sbjct: 210 DLALAELLYGSGLRISEALSLDVDDVQLSSRVLRV----------MGKGSRE--RLAPLS 257 Query: 122 DISYVRQMESWMITTR--PRRREPLWAVTDETMRNWLKQAVRRAEA--DGVHFSIPVTPH 177 D S+ +++W+ E V R ++A R E + V+PH Sbjct: 258 DTSF-SCLKAWLEERPLLALPDEAALFVGARGARLNRREAARIVERLCRRAGLTFTVSPH 316 Query: 178 TFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 + RHS+ H+L + +Q L GH+ + + YT+V + T G+ Sbjct: 317 SLRHSFATHLLEAGADMRSVQELLGHQRLTTTQRYTQVSLESLMQTYDQAHPRSGKR 373 >UniRef50_D0W4M6 Tyrosine recombinase XerD n=1 Tax=Neisseria cinerea ATCC 14685 RepID=D0W4M6_NEICI Length = 308 Score = 208 bits (529), Expect = 2e-52, Method: Composition-based stats. Identities = 46/240 (19%), Positives = 95/240 (39%), Gaps = 35/240 (14%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRH 62 ++ +R+ + G+ L + P + ++S LL R Sbjct: 88 LSACKRLYIWMEREGMRTDNPTRLLKPPKIDKNIPTLITEQQISRLLSAPDTDTPHGLRD 147 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 L ++ TG+R+ EA L+ + DLD G+ K R+VP+ Sbjct: 148 KALLELMYATGLRVSEAVRLSFGNLDLDRGCIT----------TLGKGNKQ--RIVPMGR 195 Query: 123 ISYVRQMESWMITTRP-----RRREPLW------AVTDETMRNWLKQAVRRAEADGVHFS 171 S V +E + RP R + L+ ++ + +K+ +A + Sbjct: 196 ES-VYWVERYYKEARPLLLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQAGIE----- 249 Query: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 ++PH+ RH++ H++ H +V+Q + GH D + ++YT V + + + + + + Sbjct: 250 -HISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVRLHSVVKEHHSRN 308 >UniRef50_B2KAP5 Integrase family protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KAP5_ELUMP Length = 291 Score = 207 bits (528), Expect = 2e-52, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 73/215 (33%), Gaps = 23/215 (10%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMP----DQRHHMLFATLWNTGMRIGEARM 81 T P L E+S LL + P + R + + G+R+ E Sbjct: 89 EDPCRFLLSPKLTQKIPETLTKEEISRLLSFPPKTFAEIRTLTILELFYACGLRVSELVS 148 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQMESWMIT 135 L ES +L +K G+ K R +P+ D + Y+ + E ++ Sbjct: 149 LRIESVNL----------KDKWVLAYGKGAKQ--RFIPIHDRAVKVLEIYLSEREKYLKG 196 Query: 136 TRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRK 195 + + R + + V + PH FRH++ H+L + Sbjct: 197 KESASEIFINKNGKKISRMSVWKDVNDLGRLA-GIERSLHPHLFRHTFATHLLIGGADLR 255 Query: 196 VIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 +Q + GH D ++ ++YT + + Sbjct: 256 SLQEMLGHADLQTTQIYTHLDVQSLKEKHKKFHPR 290 >UniRef50_A1KS31 Tyrosine recombinase xerC n=25 Tax=Neisseriaceae RepID=XERC_NEIMF Length = 305 Score = 207 bits (528), Expect = 2e-52, Method: Composition-based stats. Identities = 44/218 (20%), Positives = 75/218 (34%), Gaps = 21/218 (9%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMPD------QRHHMLFATLWNTGMRIGEA 79 + + P L ++ +L D R H LF ++ +G+R+ E Sbjct: 100 TDPTADIKPPKQPERVPKALPQEWLNRMLDLPVDGGDPLAVRDHALFELMYGSGLRVSEI 159 Query: 80 RMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR 139 L + LD V G+ K R VPLT S V +++++ + Sbjct: 160 HGLNADDVYLDEAWVHV----------TGKGRKQ--RQVPLTGKS-VEALKNYLPLRQTA 206 Query: 140 RREPLWAVTDETMRNWLKQAVRRAEADGV--HFSIPVTPHTFRHSYIMHMLYHRQPRKVI 197 R +Q +R V+PH RHSY H+L + + + Sbjct: 207 SDGKALFTGRNGTRLSQRQIQKRLAQWAAQNGDGRHVSPHMMRHSYAGHLLQASRDIRAV 266 Query: 198 QALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDA 235 Q L GH + ++YT++ +A R Sbjct: 267 QELLGHSSLSTTQIYTKLDFDHIARLYDEAHPRAKRRD 304 >UniRef50_A1RWD6 Phage integrase family protein n=1 Tax=Thermofilum pendens Hrk 5 RepID=A1RWD6_THEPD Length = 295 Score = 207 bits (527), Expect = 3e-52, Method: Composition-based stats. Identities = 51/209 (24%), Positives = 79/209 (37%), Gaps = 19/209 (9%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGV 92 + P YL A EV ++ + R ++ L+ TG+R+ E L DL+ Sbjct: 102 ELPKREKRLPRYLEAEEVFRMVNAAENLRDKLIVLLLFTTGLRVSELVSLRVSDVDLEKR 161 Query: 93 RPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAV-TDET 151 VR G+ K+ RLV D + S+M + E L+ T E Sbjct: 162 TLRVR----------GKGSKE--RLVYFPDY-VADLLRSYM---KGLNSEWLFPSETAEH 205 Query: 152 MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEV 211 + + V + + VTPHT RHS+ L + IQ L GH + + +V Sbjct: 206 IHYTTVERVLKRLKEKAGIEKKVTPHTLRHSFATLSLAAGLDIREIQELLGHSNLNTTQV 265 Query: 212 YTRVFALDMAATLAVPFT--GDGRDAAEI 238 Y V + ++ D R A E Sbjct: 266 YAHVSRERLKRDYERVWSSLLDPRSAKEQ 294 >UniRef50_D2RA91 Site-specific tyrosine recombinase XerC n=10 Tax=Bifidobacteriaceae RepID=D2RA91_GARVA Length = 322 Score = 207 bits (527), Expect = 4e-52, Method: Composition-based stats. Identities = 43/229 (18%), Positives = 77/229 (33%), Gaps = 39/229 (17%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYMP----------------DQRHHMLFATLW 70 + + P+ L + +L+ + R+ + L+ Sbjct: 109 NPAEILMTSKIKNMLPSVLDEYQAESLMNNVDSKANVSTSCPKNQKAVGLRNAAILELLY 168 Query: 71 NTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQME 130 TG+R+GE L + + V G+ K R+VP +Y + + Sbjct: 169 ATGIRVGELTSLNIQDINFSSHTIKV----------TGKGNKQ--RVVPFGVPAY-KALS 215 Query: 131 SWMIT------TRPRRREPLWAVTD--ETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHS 182 +W+ R E ++ T + ++Q V EA H ++PH RHS Sbjct: 216 AWISKDGREILLRNSVEEAVFLGTRGKRIDQRLVRQIVHD-EAKSAHVP-DISPHALRHS 273 Query: 183 YIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 HML + +Q L GH + + YT V + + F Sbjct: 274 AATHMLNGGADLREVQELLGHSSLNTTQRYTHVSIESLKRKYSQAFPRA 322 >UniRef50_Q9JV76 Tyrosine recombinase xerD n=22 Tax=Neisseria RepID=XERD_NEIMA Length = 291 Score = 206 bits (526), Expect = 4e-52, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 87/249 (34%), Gaps = 38/249 (15%) Query: 2 NNVIPLQNSPERVSLLPI---APGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP 58 + L I G+ L + P + ++S LL Sbjct: 62 EQRSSQARALSACKRLYIWMEREGIRTDNPTRLLKPPKIDKNIPTLITEQQISRLLAAPD 121 Query: 59 -----DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKD 113 R L ++ TG+R+ EA L + DLD G+ K Sbjct: 122 TDTPHGLRDKALLELMYATGLRVSEAVGLNFGNVDLDRGCIT----------ALGKGDKQ 171 Query: 114 EVRLVPLTDISYVRQMESWMITTRP-----RRREPLW------AVTDETMRNWLKQAVRR 162 R+VP+ S + + RP R + L+ ++ + +K+ + Sbjct: 172 --RMVPMGQES-AYWVGRYYTEARPALLKGRSCDALFVSQKKTGISRQLAWMIVKEYASQ 228 Query: 163 AEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAA 222 A ++PH+ RH++ H++ H +V+Q + GH D + ++YT V + + Sbjct: 229 AGIG------HISPHSLRHAFATHLVQHGLDLRVVQDMLGHADLNTTQIYTHVANVWLQG 282 Query: 223 TLAVPFTGD 231 + + + Sbjct: 283 VVKEHHSRN 291 >UniRef50_D0GL18 Tyrosine recombinase XerD n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GL18_9FUSO Length = 315 Score = 206 bits (526), Expect = 4e-52, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 83/231 (35%), Gaps = 19/231 (8%) Query: 2 NNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLF----YM 57 N+V+ S + + + P L EV ++ Sbjct: 92 NSVLRKIASIRTFYKFCYLNKMVKEDPTGMIKSLKREKRLPEVLNLKEVKTIIDNIGHTP 151 Query: 58 PDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRL 117 R ++ L TG R+ E L + V + G+ K R+ Sbjct: 152 EGMRDRLIIKFLIATGARVSEILNLNIKD---------VENQGYEFIKVLGKGSK--YRI 200 Query: 118 VPLTDISYVRQMESWMITTRPRRR--EPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVT 175 VP+ + S +++ ++ RP+ + E + + +T R + +++ D V Sbjct: 201 VPIYE-SLENEIKDYISNYRPKLKGSESSFKLFPDTRRENFWKRLKKTAKDA-GIEKNVY 258 Query: 176 PHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAV 226 PH FRHS +L + +++Q + GH + + E+YT V D+ Sbjct: 259 PHIFRHSVATVLLSNGADIRIVQEILGHANISTTEIYTHVEKSDLKRIYNK 309 >UniRef50_D2LQ39 Integrase family protein n=3 Tax=Aciduliprofundum boonei T469 RepID=D2LQ39_9EURY Length = 284 Score = 206 bits (526), Expect = 4e-52, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 70/199 (35%), Gaps = 23/199 (11%) Query: 34 MATSTGATPAYLLAPEVSALLFYM-PDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGV 92 P YL EV L+ + R + + + L +G+R+ E L E D + Sbjct: 98 SPKRPRQMPKYLSEDEVKRLIEASSENPRDYAIISLLAYSGLRVSELCNLKIEDVDFNER 157 Query: 93 RPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR-----RREPLWAV 147 +V G+ KD + +V + +++++ T + + Sbjct: 158 IVYVHS---------GKGDKDRIVVV---SPRVIEALQNYLYTREDDMEYLFASQKSNKI 205 Query: 148 TDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPR 207 + + +K+ +A VTPH RH+ +L + IQ GH Sbjct: 206 SRVQVFRIVKKYAEKA-----GIKKEVTPHVLRHTLATTLLRRGVDIRFIQQFLGHSSVA 260 Query: 208 SMEVYTRVFALDMAATLAV 226 + ++YT V + + Sbjct: 261 TTQIYTHVDDALLKSVYDK 279 >UniRef50_C0W041 Possible integrase/recombinase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W041_9ACTO Length = 302 Score = 206 bits (526), Expect = 4e-52, Method: Composition-based stats. Identities = 39/222 (17%), Positives = 76/222 (34%), Gaps = 31/222 (13%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFY---------MPDQRHHMLFATLWNTGMRI 76 + + A P L +++ L + + R L++ G+R+ Sbjct: 96 SDPSLKLKTAKVDNHLPQVLSLEQINQLFNHLVETAQTGNVNAIRDWATSELLYSCGIRV 155 Query: 77 GEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITT 136 E L S D V G+ K+ RLVP + + + +W+ Sbjct: 156 AELVGLNLTSVDGSNRTLRVI----------GKGNKE--RLVPFGTPA-LESLRAWVTQG 202 Query: 137 RPR----RREPLWAVTDETMR---NWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLY 189 RP+ R + R +++ + +A + ++PH RH HML Sbjct: 203 RPQLVNERSGQALFLGSRGGRIDQRIVRECLEKACVQA-GVPV-LSPHGLRHCAATHMLE 260 Query: 190 HRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 + +Q + GH + + YT V A+ ++ + Sbjct: 261 GGADLRTVQDMLGHASLATTQRYTHVDAVRLSNIMRQAHPRA 302 >UniRef50_A0LZY5 Phage integrase family protein n=3 Tax=Bacteria RepID=A0LZY5_GRAFK Length = 385 Score = 206 bits (525), Expect = 5e-52, Method: Composition-based stats. Identities = 49/199 (24%), Positives = 89/199 (44%), Gaps = 21/199 (10%) Query: 29 LSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFD 88 +S + P L E+ LL + +H + A ++++G+R+GE L + D Sbjct: 174 ISELVRPKKSRFLPTVLSKEEIIDLLRLTRNLKHRCILALIYSSGLRVGELINLHLKDID 233 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR----REPL 144 +D + ++ + + KD ++ S++ + +++ T P+R Sbjct: 234 IDRKQILIK---------QAKGRKDRYVML---AESFLPLLYNYLQTYEPKRYFTEGYDN 281 Query: 145 WAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHR 204 + +R++LK + RRA+ S VTPHT RHS+ HML + + IQ L GH Sbjct: 282 KKYSSSAIRSFLKDSCRRAK-----ISKKVTPHTLRHSFATHMLENGTDLRYIQELLGHS 336 Query: 205 DPRSMEVYTRVFALDMAAT 223 P + +YT V D+ Sbjct: 337 KPETTMIYTHVAKKDLMKI 355 >UniRef50_C6J3X1 Tyrosine recombinase XerD n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J3X1_9BACL Length = 323 Score = 206 bits (525), Expect = 5e-52, Method: Composition-based stats. Identities = 40/252 (15%), Positives = 83/252 (32%), Gaps = 37/252 (14%) Query: 7 LQNSPERVSLLPIAPGVDF----------ATALSLRRMATSTGATPAYLLAPEVSALLFY 56 L +P + + + F + M P L E LL Sbjct: 63 LGKAPATIQRVSVTLRAFFRYLLQERRIEQDPFIMLEMPKVEKKPPQTLTVEETERLLEA 122 Query: 57 MP-----DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPP 111 R + L+ TG+R+ E L + +L+ + R Sbjct: 123 PKPDTPLGLRDKAMLELLYATGIRVSELISLNKDDVNLE------------LHFLRCTGE 170 Query: 112 KDEVRLVPLTDISYVRQMESWMITTR-----PRRREPLWAVTDETMR---NWLKQAVRRA 163 + + R++P ++ ++ ++ R R P R + +++ Sbjct: 171 RGKERILPFGGVT-AEWLDLYLREGRSHLILDERENPALFPNRRGGRISRQGFWKLMKKY 229 Query: 164 EADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAAT 223 + + +TPHT RHS+ +H+L + +Q L GH D ++++Y ++ Sbjct: 230 GQEA-GITSDITPHTLRHSFAVHLLERGADVRSVQELLGHSDASTIQMYVSRSRSNLKTV 288 Query: 224 LAVPFTGDGRDA 235 R++ Sbjct: 289 YDAFHPRTMRES 300 >UniRef50_B3QW74 Integrase family protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QW74_CHLT3 Length = 336 Score = 206 bits (525), Expect = 6e-52, Method: Composition-based stats. Identities = 33/244 (13%), Positives = 72/244 (29%), Gaps = 50/244 (20%) Query: 25 FATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ------------------------ 60 A+ + + P +L + L + D Sbjct: 106 PASPAANVTTPKAKKTLPTFLNETQTQTLFDEILDHFNEAFYHDNRAKKHEKVNTLEWDF 165 Query: 61 ---RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRL 117 R + ++ G+R+ E L D G+ K R+ Sbjct: 166 RYNRDRAILEMFYSCGLRLAELIGLNIMELDFQN----------GFVKVLGKGRKQ--RI 213 Query: 118 VPLTDISYVRQMESWMI--------TTRPRRREPLWAVTDETMR--NWLKQAVRRAEADG 167 +PL + + + +++++ VT++ R L Q + + Sbjct: 214 IPLGESA-QKTLKNYLEIKKKFFEMKRSNVLEREAVFVTEKGKRVYPVLVQRLVKKYLSP 272 Query: 168 VHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVP 227 V +PH RH++ H+L + + + + GH + + E+YT + + Sbjct: 273 VTEQKKKSPHVLRHTFATHLLNNGADLRSVSEMLGHSNLSTTEIYTHISFERLKQVYQQA 332 Query: 228 FTGD 231 Sbjct: 333 HPKA 336 >UniRef50_A6TQC7 Phage integrase family protein n=3 Tax=Clostridia RepID=A6TQC7_ALKMQ Length = 354 Score = 206 bits (524), Expect = 7e-52, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 75/194 (38%), Gaps = 24/194 (12%) Query: 29 LSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFD 88 L P L EV ++L + + +H + ++ G+R+GE L D Sbjct: 163 LYDLPRPKKEKTLPNILSQREVLSILDSVNNIKHKSILLLTYSAGLRVGEVVRLKVGDID 222 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVP------LTDISYVRQMESWMITTRPRRRE 142 D + VR +G+ KD ++ L + + + + W+ Sbjct: 223 SDRMLIHVR---------QGKGRKDRYTILSEVALSTLRKYAMIEKPKDWLFPGGKENC- 272 Query: 143 PLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAG 202 +T+ +++ A +RA+ + H+ RHS+ H+L + IQ L G Sbjct: 273 ---FLTERSVQKTFSVACKRAK-----VKKHASVHSLRHSFATHLLEGGTDLRYIQELLG 324 Query: 203 HRDPRSMEVYTRVF 216 H ++ E+YT V Sbjct: 325 HSSSKTTEIYTHVS 338 >UniRef50_D1B5G4 Integrase family protein n=2 Tax=Synergistaceae RepID=D1B5G4_THEAS Length = 297 Score = 206 bits (524), Expect = 7e-52, Method: Composition-based stats. Identities = 49/231 (21%), Positives = 76/231 (32%), Gaps = 20/231 (8%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALL-----FYMPDQRH 62 Q + + G + + PA L EV LL D R Sbjct: 79 QRAAACIKSFSRFLGEVGEDPGKVPMLPDKPSPMPAILTEGEVLRLLEATAGDAPGDLRD 138 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 + L+ G+R E LT + DL VR G+ K VR++PL Sbjct: 139 RAMIELLYGCGLRASELCSLTMKDLDLSSGTVRVR----------GKGDK--VRVLPLVG 186 Query: 123 ISYVRQMESWMITTRPRRREPLWAVTDETMRN-WLKQAVRRAEADGVHFSIPVTPHTFRH 181 + +E ++ + R L + ++R + + PH RH Sbjct: 187 ETR-SALERYLKVRGTHQGPIFQGDRGGPFRREMLWKMIQRRGRQACIAASRLHPHILRH 245 Query: 182 SYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDG 232 S H+L + +Q L GH R+ EVYT F L++ Sbjct: 246 SCATHLLRRGMDLRTLQCLLGHSSVRTTEVYTH-FDLELRDVYDRSHPRAQ 295 >UniRef50_A0LEB8 Tyrosine recombinase xerC n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=XERC_SYNFM Length = 328 Score = 205 bits (523), Expect = 8e-52, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 75/226 (33%), Gaps = 29/226 (12%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-----------QRHHMLFATLWNTGM 74 +L P++L +V LL + R+ LF +++TG+ Sbjct: 111 ENPAALVAYPKLGTKIPSFLGVDDVFHLLDSLNAGAARAGASWRRCRNWALFECMYSTGV 170 Query: 75 RIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDIS------YVRQ 128 R+ E + D E + G+ K+ R+VP+ + Y+R Sbjct: 171 RVSELAGMDESDVDFH----------EGMVRVLGKGSKE--RIVPVGGKALDAVKLYLRV 218 Query: 129 MESWMITTRPRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHML 188 ++S R + + R E ++PH RH++ H+L Sbjct: 219 LDSQFPEARRMGSALFRNARGRRLTTRSVHRLLRMELRRCGLWQHLSPHGLRHTFATHLL 278 Query: 189 YHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 + IQ + GH + + + YT V + RD Sbjct: 279 NSGADLRAIQEMLGHSNLSTTQRYTHVHVDQLMKVYDAAHPRSRRD 324 >UniRef50_A8UM85 Tyrosine type site-specific recombinase n=2 Tax=unclassified Flavobacteriales (miscellaneous) RepID=A8UM85_9FLAO Length = 376 Score = 205 bits (523), Expect = 9e-52, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 66/192 (34%), Gaps = 13/192 (6%) Query: 32 RRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDG 91 P L +V ++ + +H + + L+++G+R E L D Sbjct: 192 IERPRKAKKLPKVLSKEDVLKVITNTNNLKHKCIVSLLYSSGIRRNELIHLKISDIDSKR 251 Query: 92 VRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDET 151 + + + KD L + ++ + + +P + + Sbjct: 252 MLIRI---------DAAKGKKDRY---TLLSHALLKDLRDYYKQWKPEKYIFEGLYGKQY 299 Query: 152 MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEV 211 + Q V+ A I VTPH RHS+ H+L + IQ L GH ++ E+ Sbjct: 300 SAQSVGQIVKNAAI-KARIQITVTPHMLRHSFATHLLEDGVDIRQIQVLLGHSSTKTTEI 358 Query: 212 YTRVFALDMAAT 223 YT V Sbjct: 359 YTHVATTTFKKI 370 >UniRef50_A8F7B4 Tyrosine recombinase xerC n=1 Tax=Thermotoga lettingae TMO RepID=XERC_THELT Length = 286 Score = 205 bits (523), Expect = 9e-52, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 80/195 (41%), Gaps = 14/195 (7%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLF-YMPDQRHHMLFATLWNTGMRIGEARMLTP 84 + R P +LL E+ LL M +QR +++ + L+ G+R+ E L Sbjct: 93 ENPVEGIRNPKIRRRIPDFLLPSEIQKLLEFSMKNQRDYLMLSLLYFCGLRVSELCNLRV 152 Query: 85 ESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPL 144 E + + G+ KD R+VPLT ++E+++ + + L Sbjct: 153 EDLSFSPAFVKITM---------GKGKKD--RIVPLTS-KLAEKLENYITSCGKSPEDYL 200 Query: 145 WAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHR 204 + + + + + VR+ + PHT RH++ H+L +V+Q L GH Sbjct: 201 FGSQIKIHPSTVFRIVRKYTMM-CGIKKRIHPHTLRHTFATHLLQKGVNIRVVQDLLGHS 259 Query: 205 DPRSMEVYTRVFALD 219 + + VY V + Sbjct: 260 NLSTTSVYLHVVDQE 274 >UniRef50_Q0AFS1 Tyrosine recombinase XerC subunit n=6 Tax=Betaproteobacteria RepID=Q0AFS1_NITEC Length = 321 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 44/221 (19%), Positives = 77/221 (34%), Gaps = 23/221 (10%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALL------FYMPDQRHHMLFATLWNTGMRIGEAR 80 R+ S P L E + LL M R +F +++G+R+ E Sbjct: 113 NPCLDVRVPKSPHKLPHALSPDEAAQLLTFNPSSNDMLATRDLAIFELFYSSGLRLTELT 172 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP-- 138 L P D + G+ K R+VP+ +++ +R +++W+ Sbjct: 173 QLQPTDIDF----------TGGTVRVTGKGNK--TRIVPVGELA-LRALQAWLPLRSAWL 219 Query: 139 RRREPLWAVTDETMRNWLKQAVRRAEADGV--HFSIPVTPHTFRHSYIMHMLYHRQPRKV 196 E ++ R + R + V PHT RHS+ H+L + Sbjct: 220 IPGETALFLSQRGRRIHPRTIAYRLHQRAQLQNLDSRVHPHTLRHSFASHLLQSSGDLRA 279 Query: 197 IQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAE 237 +Q + GH RS +VYT + +A + Sbjct: 280 VQEMLGHSSIRSTQVYTHLDFQHLAKIYDQAHPRARKKPKT 320 >UniRef50_D2R3Y9 Integrase family protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R3Y9_9PLAN Length = 314 Score = 205 bits (522), Expect = 1e-51, Method: Composition-based stats. Identities = 43/225 (19%), Positives = 77/225 (34%), Gaps = 27/225 (12%) Query: 21 PGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-----QRHHMLFATLWNTGMR 75 G+ L + P L + LL +R L L+ TG R Sbjct: 103 EGIIKDNPAELLGTTKTAATIPDVLSPTVAARLLDAPQPYDPLFRRDRALLELLYATGCR 162 Query: 76 IGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMIT 135 E ++ ++ R G+ K+ RLVPL D + +E+++ Sbjct: 163 ASEVSVMEVRDLRIEDRFCLAR----------GKGSKE--RLVPLGDPALA-AVEAYLEH 209 Query: 136 TRPRRRE-------PLWAVTDETMRNWLKQA--VRRAEADGVHFSIPVTPHTFRHSYIMH 186 RP+ P ++ R ++ + + A ++PHT RHS+ H Sbjct: 210 ERPKLAAKSKQGVPPWLLLSSRGQRLTRQKIWELVKQYALRCGAPASMSPHTLRHSFATH 269 Query: 187 MLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 +L + +Q L GH + ++YT V + + Sbjct: 270 LLSGGADLRQVQELLGHASIGTTQIYTHVDQSRLKKIHSQFHPRA 314 >UniRef50_A3ZUD5 Integrase/recombinase n=2 Tax=Planctomycetaceae RepID=A3ZUD5_9PLAN Length = 291 Score = 205 bits (522), Expect = 1e-51, Method: Composition-based stats. Identities = 46/238 (19%), Positives = 80/238 (33%), Gaps = 28/238 (11%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-----QRH 62 S + G+ + L P+ + ++ LL +R Sbjct: 68 VVSLKIFFRYLQLEGILQDNLVELLGSQKIWRRIPSVIAPHKIDDLLTAPWSEDPYWRRD 127 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 L L+ TG R E L + LD E G+ K R+ PL Sbjct: 128 RALLEVLYATGCRASEVSGLRMDDVHLD----------EGYVKCEGKGSKQ--RIAPLAQ 175 Query: 123 ISYVRQMESWMITTRPR------RREPLWAVTDETMRNW---LKQAVRRAEADGVHFSIP 173 S R +++++ RPR R ++ R + + V++ A Sbjct: 176 KS-ARVVKTYLDEERPRLSKKNLRDAAFLFLSRSGKRLSRIAIWELVKKYAARA-GIDPD 233 Query: 174 VTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 V+PH+ RHS+ H+L + +Q + GH + ++YT V + A Sbjct: 234 VSPHSLRHSFATHLLAGGADLRHVQEMMGHASIATTQIYTHVDQSRLKKVHAQYHPRA 291 >UniRef50_A6CC23 Integrase/recombinase n=2 Tax=Planctomyces RepID=A6CC23_9PLAN Length = 316 Score = 205 bits (522), Expect = 1e-51, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 86/236 (36%), Gaps = 27/236 (11%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYM-----PDQRH 62 + + + GV + L P L +V+ LL R Sbjct: 94 LVTLKLFFRYLVLEGVLAESVADLLNSPKLWKYLPKVLSPEKVNQLLAAPCRQDRYPLRD 153 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 + A ++ TG R+ E L S L +E G+ K+ R+V L Sbjct: 154 RAILAMMYATGCRVTEIVTLPLNSVKL----------TEGYARCVGKGNKE--RMVSLNP 201 Query: 123 ISYVRQMESWMITTRP-----RRREPLWAVTDET---MRNWLKQAVRRAEADGVHFSIPV 174 ++ V +E+++ RP E + R + V++ A V S V Sbjct: 202 VA-VAAVEAYLRHERPVLTRRNTTEQALFLNRGGKQLSRVMVWNIVKK-NAARVGCSKEV 259 Query: 175 TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 +PHT RHS+ HM+ + +Q L GH + R+ ++YT V + A + Sbjct: 260 SPHTLRHSFATHMMAGGAEIRALQELLGHANIRTTQIYTHVDHSRLKAVHQMYHPR 315 >UniRef50_C0W1H5 Possible integrase/recombinase n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W1H5_9ACTO Length = 317 Score = 205 bits (522), Expect = 1e-51, Method: Composition-based stats. Identities = 47/234 (20%), Positives = 85/234 (36%), Gaps = 29/234 (12%) Query: 16 LLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLF------YMPDQRHHMLFATL 69 ++ + A + + P + E++A+L R L L Sbjct: 95 RYAVSEDILSADPAAEVQQKKLGKHLPKAISLEEIAAMLEVAGQRPGPVGLRDVALIELL 154 Query: 70 WNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQM 129 + TG RI E L+P+ L G P V G+ K+ RLVPL + V+ + Sbjct: 155 YGTGARITEVMNLSPDDLYLAGEFPHV--------KLFGKGRKE--RLVPLGSFA-VQAL 203 Query: 130 ESWMI--------TTRPRRREPLWAVTDETM---RNWLKQAVRRAEADGVHFSIPVTPHT 178 E +++ + R + + R + + + A V+PH+ Sbjct: 204 EDYLLLGRPLLLGKAKTRVAGHPLFLNKRGLSLSRQSAWEIISQ-TAVAAGCVSEVSPHS 262 Query: 179 FRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDG 232 RHS+ H+L + +Q L GH + ++YT+V + A+ Sbjct: 263 LRHSFATHLLEGGASIRDVQELLGHASVTTTQIYTKVSMNTLREVHALTHPRAN 316 >UniRef50_B7CAN0 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAN0_9FIRM Length = 300 Score = 204 bits (521), Expect = 2e-51, Method: Composition-based stats. Identities = 40/211 (18%), Positives = 89/211 (42%), Gaps = 22/211 (10%) Query: 36 TSTGATPAYLLAPEVSALLFYMPD----QRHHMLFATLWNTGMRIGEARMLTPESFDLDG 91 S+ P YL EV + D Q + + L++ G+R+ E L L Sbjct: 103 KSSKHLPVYLSVDEVKKVFSSFQDNEIDQYNKTILVVLYSCGLRVSELCDLKLNDVHL-- 160 Query: 92 VRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP--RRREPLWAVTD 149 +E++ +G+ K+ R++P++ V QM+ ++ + R + + + Sbjct: 161 --------TEQILKVKGKGDKE--RIIPISSY-CVSQMKYYLDSIRFVWDVKNVSYFFVN 209 Query: 150 ETMRNWLKQAV---RRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDP 206 +Q V + + + ++ + ++ H+FRHS+ H+L +++Q L GH + Sbjct: 210 RLGHICTRQYVHLMIKQKVNELNLNPKISAHSFRHSFATHLLDGDADLRIVQELLGHSNI 269 Query: 207 RSMEVYTRVFALDMAATLAVPFTGDGRDAAE 237 + ++YT + +++ F + E Sbjct: 270 STTQIYTHIQDKRLSSVYDRCFQKIEKSKEE 300 >UniRef50_Q2GEQ3 Tyrosine recombinase XerD n=2 Tax=Neorickettsia RepID=Q2GEQ3_NEOSM Length = 305 Score = 204 bits (521), Expect = 2e-51, Method: Composition-based stats. Identities = 37/227 (16%), Positives = 83/227 (36%), Gaps = 20/227 (8%) Query: 20 APGVDFATALSLRRMATSTGATPAYLLAPEVSALL-----FYMPDQRHHMLFATLWNTGM 74 + + + T P YL EV +LL R + + L+++GM Sbjct: 87 SEKISSTNPAQSLELPKKTLVLPRYLTKEEVFSLLTFLEAGQPATLRLYAILEILYSSGM 146 Query: 75 RIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMI 134 R+ E + + ++ G+ K+ R++P + + ++ ++ ++ Sbjct: 147 RVSELINMKVSDIRP-------LLNGQQHIIIVGKGRKE--RILPFSKKA-IQVLKLYLT 196 Query: 135 TTRPRRREPLWAVTDE----TMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYH 190 + + L+ R L Q ++ ++PH RHS+ H+L + Sbjct: 197 SYQ-SNSPWLFPGAGRKDRPMSRQRLGQLLKELALKCKIDPKRISPHVIRHSFATHLLDN 255 Query: 191 RQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAE 237 KV+Q L GH + ++YT + + + ++ + Sbjct: 256 GMDIKVVQDLLGHAQITTTQIYTHISQHKLHKEIEAKHPLSSKEIGK 302 >UniRef50_Q0F1F3 Tyrosine recombinase n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F1F3_9PROT Length = 298 Score = 204 bits (521), Expect = 2e-51, Method: Composition-based stats. Identities = 51/222 (22%), Positives = 78/222 (35%), Gaps = 20/222 (9%) Query: 22 GVDFATALSLRRMATSTGATPAYLLAPEVSALL---FYMPDQRHHMLFATLWNTGMRIGE 78 G+ A + R + P L + +AL+ D+R L A ++ G+R+ E Sbjct: 90 GICPANVAAGVRPPKKSARLPRTLPPEQTAALMQPTHASADRRDLALLAVMYGAGLRVSE 149 Query: 79 ARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITT-- 136 A L DL V G+ K R+VPL + + W+ Sbjct: 150 AVGLDLHDIDLHSCELRV----------LGKGSKQ--RIVPLPTTA-ADLLGQWLDERLL 196 Query: 137 RPRRREPLWAVTDETMRNWLK--QAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPR 194 R E + R + Q + + A I VTPH RHS+ H+L Sbjct: 197 GLVRDERAVFLNRFGQRLTARSVQRMLKTRALESGADISVTPHRLRHSFATHLLAGGVDL 256 Query: 195 KVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAA 236 + IQ L GH + E YT + + GR + Sbjct: 257 RAIQELLGHASLATTERYTHLDIAKLTEVYDRSHPRAGRRDS 298 >UniRef50_A6DQI4 Tyrosine recombinase n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DQI4_9BACT Length = 292 Score = 204 bits (521), Expect = 2e-51, Method: Composition-based stats. Identities = 50/231 (21%), Positives = 87/231 (37%), Gaps = 33/231 (14%) Query: 13 RVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ-----RHHMLFA 67 + ++P G +A + P YL PE+ LL + R+ + Sbjct: 83 QEKIVPKDVGEHLESA-------RLSRLLPDYLSLPEIERLLHIYDEAIPLQFRNKFIIE 135 Query: 68 TLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVR 127 L++ G+RI E L +SF+ + V +G+ K+ R VP Sbjct: 136 LLYSCGLRISELCGLRTDSFNYESGFLRV----------KGKGSKE--RSVPFGTQ-VAS 182 Query: 128 QMESWMITTRP----RRREPLWAVTDET---MRNWLKQAVRRAEADGVHFSIPVTPHTFR 180 ++ RP + P V++ R+ + Q ++ A + + PH R Sbjct: 183 MSRQYIKNIRPQLCKKNNPPELIVSNNGRPLTRSRVWQFLKEAAI-KAEINKNLHPHVLR 241 Query: 181 HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 HS+ H+L + ++IQ L GH D + E+YT V + F Sbjct: 242 HSFASHLLSNNADLRIIQELLGHADIATTEIYTHVEKTRLQNIHQKFFPRA 292 >UniRef50_C2D6I8 Tyrosine recombinase n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6I8_9ACTN Length = 342 Score = 204 bits (520), Expect = 2e-51, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 74/228 (32%), Gaps = 31/228 (13%) Query: 22 GVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRI 76 G+ + + P L + LL R L L+ TG RI Sbjct: 128 GLTKKDSAAALASPKIPKTLPHVLSESSIEKLLATCQEDTVCGLRDRALLELLYATGCRI 187 Query: 77 GEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITT 136 EA L D K G+ K+ R+VP+ R + ++ T Sbjct: 188 SEAAHLCVSDISFD----------SKQVRLFGKGSKE--RIVPIY-PECARILHMYLTTA 234 Query: 137 RP----RRREPLWAVTDETMRNWLK---------QAVRRAEADGVHFSIPVTPHTFRHSY 183 RP +++ A T++ + + + V H TPHT RHS+ Sbjct: 235 RPVLLSKQKNQAQAQTNQHVFISTRGKAMSDQALRYVFEHYMRLSHLQEIATPHTMRHSF 294 Query: 184 IMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 +L H + +Q L GH + ++YT V + Sbjct: 295 ATELLSHGADLRSVQELLGHASLATTQIYTHVSVNALKDAARRANPRA 342 >UniRef50_Q31IL8 Tyrosine recombinase XerC subunit n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31IL8_THICR Length = 317 Score = 204 bits (520), Expect = 2e-51, Method: Composition-based stats. Identities = 37/241 (15%), Positives = 76/241 (31%), Gaps = 19/241 (7%) Query: 2 NNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYM---- 57 ++ ++ I G + A P L LL Sbjct: 87 RSIARQLSAIRAFYAFLIEQGRANHNPAKGLKAPKQPKALPKSLDVDLTRQLLEQPLKTW 146 Query: 58 PDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRL 117 D R +F L++ G+R+ E L P + L+ G+ K+ R Sbjct: 147 QDVRDQAIFEILYSGGLRVSELVELDLS--------PGLDGLASGWVRVLGKGQKE--RD 196 Query: 118 VPLTDISYVRQMESWMITTRP--RRREPLWAVTDETMRNWLKQAVRRAEAD--GVHFSIP 173 P+ + + + W+ + E V R ++ + + Sbjct: 197 APVGQPA-QKALHRWLEIRSDYAQPGEQAVFVNRFGKRLGVRSIQTQLDKRTLQAGLPTK 255 Query: 174 VTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGR 233 ++PH RH+ H+L + +Q + GH + + ++YT++ +A + Sbjct: 256 MSPHRLRHACATHVLESSGDLRAVQEMLGHANLSTTQIYTKLDLQHLATVYDKAHPRAKK 315 Query: 234 D 234 Sbjct: 316 K 316 >UniRef50_C0AAZ7 Integrase family protein n=2 Tax=Bacteria RepID=C0AAZ7_9BACT Length = 329 Score = 204 bits (520), Expect = 2e-51, Method: Composition-based stats. Identities = 41/225 (18%), Positives = 70/225 (31%), Gaps = 27/225 (12%) Query: 22 GVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ-------------RHHMLFAT 68 G L + P +L ++ LL R + Sbjct: 117 GRVSRNPLVGLALPKLEKRLPKFLTEQQMKLLLSGPQRLLDNVADITPFTAWRDRLAMEL 176 Query: 69 LWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQ 128 L+ G+R+ E L D + V G+ K+ RL PL ++ Sbjct: 177 LYGGGLRVSELTALDYGQIDF----------TSGVARVLGKGRKE--RLCPLGKVALAVL 224 Query: 129 MESWMITTRPRRREPLWAVTDETMRNWLKQ--AVRRAEADGVHFSIPVTPHTFRHSYIMH 186 ++ R VT E R ++Q + + ++PH RHSY H Sbjct: 225 VKWKNEYARDTSPAAPVLVTPEHERMPVRQVQLMLKRYLALAGLPTDLSPHKLRHSYATH 284 Query: 187 MLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 +L +++Q L GH + ++YT V + Sbjct: 285 LLNAGADLRLVQELLGHASLNTTQIYTHVSIARLRDIYDKAHPRA 329 >UniRef50_A4TEB1 Tyrosine recombinase xerC n=10 Tax=Actinomycetales RepID=XERC_MYCGI Length = 300 Score = 204 bits (520), Expect = 2e-51, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 74/220 (33%), Gaps = 28/220 (12%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYMPD---------QRHHMLFATLWNTGMRIG 77 S ++ + P+ L + L R ++ L+ TG+R+ Sbjct: 94 DPASRLQVPKARRTLPSVLRQDQARDALEAAESGAQQGDPLAVRDRLVVEMLYATGIRVS 153 Query: 78 EARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR 137 E L + D S ++ G+ K R VP + ++ + +W+ R Sbjct: 154 ELCGLDVDDVD----------TSRRLLRVLGKGNKQ--RTVPYGEPAHA-ALTAWLHEGR 200 Query: 138 P----RRREPLWAVTDETMRNWLKQA--VRRAEADGVHFSIPVTPHTFRHSYIMHMLYHR 191 P P + R +QA V V + + PH RHS H+L Sbjct: 201 PALATADSGPALLLGARGKRLDPRQARTVVHQTVSAVGGAPDIGPHGLRHSAATHLLEGG 260 Query: 192 QPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 +V+Q L GH + ++YT V + A Sbjct: 261 ADLRVVQELLGHSSLATTQLYTHVTVARLRAVHDQAHPRA 300 >UniRef50_C8P0J8 Tyrosine recombinase XerC n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P0J8_ERYRH Length = 296 Score = 204 bits (519), Expect = 3e-51, Method: Composition-based stats. Identities = 38/216 (17%), Positives = 76/216 (35%), Gaps = 33/216 (15%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALL----FYMPDQRHHMLFATLWNTGMRIGEARML 82 ++ P +L+ E+ LL + R+ ++ ++ G+R+ E L Sbjct: 92 NPFQQIKIKRQGRHLPHFLMYDEIETLLLSCDESVLGVRNQVMIELMYACGLRVSEVVDL 151 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR--- 139 DL V G+ K+ S V ++ S++ RP+ Sbjct: 152 QIHDLDLTERSLRVI----------GKGNKERQLFFY---ESLVPKLWSYLNLYRPQFPN 198 Query: 140 --------RREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHR 191 + +T +++ L+ + A + + PH RHS+ H+L + Sbjct: 199 VSDTEAVFLNQRGKPLTPRGIQHILEHQGKTA-----GLRMKLHPHMLRHSFATHLLDNG 253 Query: 192 QPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVP 227 +V+Q L GH + ++YT V + Sbjct: 254 ASLRVVQTLLGHESLSTTQIYTHVSMQKIKEVYDDA 289 >UniRef50_C4F8T8 Putative uncharacterized protein n=2 Tax=Collinsella RepID=C4F8T8_9ACTN Length = 308 Score = 204 bits (519), Expect = 3e-51, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 67/213 (31%), Gaps = 29/213 (13%) Query: 34 MATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARMLTPESFD 88 P L A E++AL R + TG RI E L Sbjct: 108 APKQRRELPHVLTAEELAALFDAPDLSCPVGLRDAAMLELFIATGARISELSRLELGDV- 166 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRRE------ 142 ++E+ G+ K+ R+VPL + + E ++ RP Sbjct: 167 ---------CVAERQVCLLGKGSKE--RIVPLYARA-IEVYERYLENGRPNLLRAPALGG 214 Query: 143 ---PLWAVTDETMRNWLK--QAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVI 197 V+D + S +TPH RH++ +L + + Sbjct: 215 DACRAVFVSDRGRAMNSDALRYRFDVLKRKAGISSDITPHAMRHTFATELLGGGADLRSV 274 Query: 198 QALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 Q L GH + ++YT + + + +A Sbjct: 275 QELLGHASLSTTQIYTHLTPDRLKSAVARAHPR 307 >UniRef50_A1UEH7 Tyrosine recombinase xerC n=24 Tax=Mycobacterium RepID=XERC_MYCSK Length = 300 Score = 204 bits (519), Expect = 3e-51, Method: Composition-based stats. Identities = 44/225 (19%), Positives = 78/225 (34%), Gaps = 28/225 (12%) Query: 22 GVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD---------QRHHMLFATLWNT 72 G+ + + +M + PA L + L R ++ L+ T Sbjct: 89 GLMASDPATRLQMPKARRTLPAVLRQDQARDALDAANSGAQQGDPLALRDRLIVEMLYAT 148 Query: 73 GMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESW 132 G+R+ E L + D S ++ G+ K R VP + + + + +W Sbjct: 149 GIRVSELCGLDIDDVD----------TSRRLLRVLGKGDKQ--RTVPFGEPA-EQALRAW 195 Query: 133 MITTRPR----RREPLWAVTDETMRNWLKQA--VRRAEADGVHFSIPVTPHTFRHSYIMH 186 + + RP P + R +QA V V + + PH RHS H Sbjct: 196 LTSGRPALATAESGPALLLGARGRRLDPRQARTVVHETVGAVAGAPDIGPHGLRHSAATH 255 Query: 187 MLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 +L +++Q L GH + ++YT V + A Sbjct: 256 LLEGGADLRIVQELLGHSTLATTQLYTHVTVARLRAVHDQAHPRA 300 >UniRef50_B3QM22 Tyrosine recombinase xerC n=10 Tax=Chlorobiaceae RepID=XERC_CHLP8 Length = 336 Score = 203 bits (517), Expect = 5e-51, Method: Composition-based stats. Identities = 49/261 (18%), Positives = 76/261 (29%), Gaps = 44/261 (16%) Query: 2 NNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLF------ 55 ++ S + + G ++ LSL P ++ E L Sbjct: 89 RSIARKLASVKSFYRFLLETGRISSSPLSLVVTPRLDKKVPRFVSEEEARQLFRRFESQE 148 Query: 56 ---------------YMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILS 100 R + L+ G+R+ E L DL Sbjct: 149 DNAALQGDGKKAEVRQFETFRDRAVLEVLYGCGLRLSELIALERADVDL----------V 198 Query: 101 EKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPL--------WAVTDET- 151 G+ K R+VPL + + V + + R R PL VT Sbjct: 199 HGFLKVTGKGRKQ--RIVPLGEPA-VEALRKYFEVRRNFFRIPLERTGESSRVFVTSRGR 255 Query: 152 -MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSME 210 + L Q + + V S PH RHS+ HML K + + GH + E Sbjct: 256 QLYPMLVQRMTKRYLTPVSESEKKNPHILRHSFATHMLNGGADLKSVSEMLGHSSLTTTE 315 Query: 211 VYTRVFALDMAATLAVPFTGD 231 +YT V + G Sbjct: 316 LYTHVTFSRLKEIYDKAHPGA 336 >UniRef50_UPI0000510416 phage integrase family protein n=1 Tax=Brevibacterium linens BL2 RepID=UPI0000510416 Length = 319 Score = 203 bits (516), Expect = 6e-51, Method: Composition-based stats. Identities = 47/236 (19%), Positives = 72/236 (30%), Gaps = 28/236 (11%) Query: 2 NNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQR 61 NN +P++ S LP A L R+ + S + R Sbjct: 106 NNPAARLRTPKKDSRLPTVLKPQQAADLVSRQR--------TVHTEADNSDPIEATKWVR 157 Query: 62 HHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLT 121 + L+ T +R+ E L D V G+ K+ R VP Sbjct: 158 DAAILEMLYATAVRVSELTGLNRGDVDHQRSMITV----------LGKGNKE--RRVPYG 205 Query: 122 DISYVRQMESWMITTRPRRRE---PLWAVTDETMR---NWLKQAVRRAEADGVHFSIPVT 175 + ++ W+ E + R +++ V R A + Sbjct: 206 KPA-QTALQKWLSLRDTFASESSGDALFLGVRGGRIGARQVRELVHRYGAADPSAP-DIG 263 Query: 176 PHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 PH RHS HML + IQ L GH S ++YT V + T Sbjct: 264 PHGLRHSAATHMLDGGADLRQIQELLGHSTMSSTQIYTHVSMQRLQETYRQAHPRA 319 >UniRef50_Q12S88 Tyrosine recombinase XerC n=1 Tax=Shewanella denitrificans OS217 RepID=Q12S88_SHEDO Length = 321 Score = 203 bits (516), Expect = 6e-51, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 75/216 (34%), Gaps = 21/216 (9%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMPD----QRHHMLFATLWNTGMRIGEARM 81 P + +S LL D R + +++G+R+GE Sbjct: 114 HNPAKGLSAPKQAKPLPKNIDVDAISHLLAIDGDDPLVIRDRAIMELFYSSGLRLGELAS 173 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP--R 139 L L + G+ K+ R VP+ ++ + + W + Sbjct: 174 LNYGDIHL----------GLQEVKVLGKGGKE--RRVPVGKLA-MEALALWHTQRLLLVQ 220 Query: 140 RREPLWAVTDETMRNWLKQAVRRAEADGVH--FSIPVTPHTFRHSYIMHMLYHRQPRKVI 197 EP V+++ R + R G + S+PV PH RHS+ HML + + Sbjct: 221 ADEPALFVSNQGKRLSHRSIQARMAKWGQNQALSVPVHPHKLRHSFATHMLESSGDLRAV 280 Query: 198 QALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGR 233 Q L GH + + ++YT + +A + Sbjct: 281 QELLGHANLSTTQIYTSLDFQHLAKVYDGAHPRAKK 316 >UniRef50_UPI0001C31AAB integrase family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31AAB Length = 313 Score = 202 bits (515), Expect = 7e-51, Method: Composition-based stats. Identities = 51/221 (23%), Positives = 83/221 (37%), Gaps = 27/221 (12%) Query: 25 FATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-----QRHHMLFATLWNTGMRIGEA 79 L P L EV+ALL +P R LF + +G+R E Sbjct: 106 QQNPADLLSAPRKAQRLPYVLKPVEVAALLDRIPADTALALRDRALFELAYASGLRAEEL 165 Query: 80 RMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR 139 ML S + DG R V G+ K R+VP + + ++ + ++ RP Sbjct: 166 VMLDVGSIEFDGERVRV----------EGKGAK--TRIVPAGEPA-LKAIARYLDRARPA 212 Query: 140 ----RREPLWAVTDETMRNW---LKQAVRRAEADGVHFSI--PVTPHTFRHSYIMHMLYH 190 + ++ R +++ +R S V+PH RHS+ H+L + Sbjct: 213 LATAESDGALFLSKSGRRLSTSDVRRRLRVWARQAAGVSTAGGVSPHALRHSFATHLLEN 272 Query: 191 RQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 + IQ L GH + +VYTRV + + + A Sbjct: 273 GADLRSIQELLGHASISTTQVYTRVESARLRSAYANSHPRA 313 >UniRef50_A6H1H3 Integrase/recombinase n=2 Tax=Bacteria RepID=A6H1H3_FLAPJ Length = 347 Score = 202 bits (515), Expect = 7e-51, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 85/205 (41%), Gaps = 23/205 (11%) Query: 29 LSLRRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFD 88 + + P L E+ +L + +H + + +++ G+R E L P D Sbjct: 158 VDKIHRPKRSKLLPNVLSKEEIKLILEAHSNIKHKTMLSLIYSCGLRRSELLHLKPTDID 217 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRR-----REP 143 +R + + KD R+ PL + + + +P+ + P Sbjct: 218 SKRGIVIIR---------QSKGKKD--RIAPL-SPKILVMLREYYSNYKPKSWLFEGQIP 265 Query: 144 LWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGH 203 ++++++N LKQA+ +A+ + PV+ H RHSY H+L + IQ L GH Sbjct: 266 GETYSEKSLQNVLKQALEKAK-----IAKPVSLHWLRHSYATHLLESGTDLRYIQELLGH 320 Query: 204 RDPRSMEVYTRVFALDMAATLAVPF 228 ++ E+YT V ++ PF Sbjct: 321 SSTKTTEIYTHVSTKNLQQI-KSPF 344 >UniRef50_UPI00019772C5 site-specific tyrosine recombinase XerC n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI00019772C5 Length = 334 Score = 202 bits (515), Expect = 7e-51, Method: Composition-based stats. Identities = 41/256 (16%), Positives = 69/256 (26%), Gaps = 64/256 (25%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-------------------------- 59 A ++ P+ L + L+ + D Sbjct: 93 ADPAAVLMTPKLPDTLPSVLTEAQAERLMDRVDDDASLHAASSQRYETRHDEMPRLDSAH 152 Query: 60 -------------QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRAR 106 R + L+ TG+R+ E L D V Sbjct: 153 RGEGMSQRDEVVALRDAAMLELLYATGIRVAELVGLDIGDVDWSHRTIRV---------- 202 Query: 107 RGRPPKDEVRLVPLTDISYVRQMESWMITTRP-----------RRREPLWAVTDETMRNW 155 G+ K R+VP D + + + W RP + + Sbjct: 203 TGKGSKQ--RVVPFGDPA-EKALAGWKEHGRPLILRRAGAGTLDTAALFLGMRGRRIDQR 259 Query: 156 LKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRV 215 + + V A ++PH+ RHS HML + +Q + GH R+ + YT V Sbjct: 260 IVRDVVHRAARESGVP-DISPHSLRHSAATHMLDGGADLREVQEMLGHSSLRTTQRYTHV 318 Query: 216 FALDMAATLAVPFTGD 231 + F Sbjct: 319 SIEQLKERYRQAFPRA 334 >UniRef50_C8WAJ5 Integrase family protein n=2 Tax=Atopobium RepID=C8WAJ5_ATOPD Length = 305 Score = 202 bits (515), Expect = 8e-51, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 77/236 (32%), Gaps = 35/236 (14%) Query: 12 ERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLF 66 +R L+ P + + + P + +V+ LL R Sbjct: 90 QREKLIATDPALALSN-------PRAPRNLPHTMTDSDVNRLLESCDVSTAAGLRDRAFL 142 Query: 67 ATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYV 126 L+ TG RI E L E DL G+ K+ R+VPL + + + Sbjct: 143 EFLYATGARISEVATLRLEQVDLQN----------GTVRLFGKGSKE--RIVPLYESA-I 189 Query: 127 RQMESWMITTRP--------RRREPLWAVTDETMRNWLK--QAVRRAEADGVHFSIPVTP 176 ++ ++ ++RP R ++ + V + ++P Sbjct: 190 EWLKKYLRSSRPTLLLKDKTGRVHSALFISVRGNNMSADSLRKVFSSYLTAAGLDSSLSP 249 Query: 177 HTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDG 232 H RH+Y +L +++Q L GH + +VYT + + Sbjct: 250 HAMRHTYATELLGGGADLRIVQELLGHESLSTTQVYTHLSVDRLKEAAKAAHPRSK 305 >UniRef50_C6J0X8 Phage integrase n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J0X8_9BACL Length = 380 Score = 202 bits (515), Expect = 8e-51, Method: Composition-based stats. Identities = 42/236 (17%), Positives = 77/236 (32%), Gaps = 16/236 (6%) Query: 3 NVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQRH 62 + + + + L + + + R P L EV ++ + +H Sbjct: 157 SPAYVNQAISALRFLAVEVFKQPSEQMKYIR-PQKEKKLPYVLSEQEVLRVIQAPTNLKH 215 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 + + +G+R+ E L D + VR +G+ KD L Sbjct: 216 RTMLYLAYASGLRVSEVVRLKVTDIDPERGILRVR---------QGKGKKDRH---TLLS 263 Query: 123 ISYVRQMESWMITTRPRRREPLWAVTDETMRNWLK--QAVRRAEADGVHFSIPVTPHTFR 180 + ++ ++ R L+ + Q V + V H R Sbjct: 264 QTAWDMIQKYVEAERLSNSMWLFPGQHSGSHLHERSLQKVFQEALQTSGIRKQVGIHVLR 323 Query: 181 HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAA 236 HS+ H+L + + IQ L GH +P + E YT V ++ P RD Sbjct: 324 HSFATHLLENGTDLRYIQELLGHANPSTTERYTHVSTKNLKRI-KSPLDRILRDRR 378 >UniRef50_A4C321 Tyrosine type site-specific recombinase n=4 Tax=Bacteroidetes/Chlorobi group RepID=A4C321_9FLAO Length = 374 Score = 202 bits (515), Expect = 9e-51, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 73/197 (37%), Gaps = 14/197 (7%) Query: 32 RRMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDG 91 P L E+ A+ + + +H L + L++ G+RIGEA L D Sbjct: 188 IERPRKEKKLPIILSGAEIKAIFSTITNLKHKALLSLLYSAGLRIGEAITLEVTDIDCQR 247 Query: 92 VRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVTDET 151 + + R+ + KD L +++ + + + RP+ A T Sbjct: 248 MLIY---------GRQAKGKKDRY---TLLSPVFLKILRDYYVAYRPKNSLFEGA-NGST 294 Query: 152 MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEV 211 + Q V + T H+ RHS+ H+L + IQ L GH P++ + Sbjct: 295 YSDASAQKVLKNALFKAGIRKKATLHSLRHSFATHLLEKGTDIRYIQELLGHSSPKTTMI 354 Query: 212 YTRVFALDMAATLAVPF 228 YT V + PF Sbjct: 355 YTHVTQTSLKKI-KNPF 370 >UniRef50_Q87DN0 Tyrosine recombinase xerD n=57 Tax=Proteobacteria RepID=XERD_XYLFT Length = 324 Score = 202 bits (515), Expect = 9e-51, Method: Composition-based stats. Identities = 44/223 (19%), Positives = 76/223 (34%), Gaps = 32/223 (14%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYM-----PDQRHHMLFATLWNTGMRIGEARM 81 +L P L ++ ALL R+ + ++ G+R+ E Sbjct: 114 NPSTLLAHPVLPHPLPKALTESQIEALLAAPSIETPEGLRNRAMLELMYAAGLRVSELVT 173 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP--- 138 L + + V G+ K+ RLVPL + S ++ ++ RP Sbjct: 174 LPVAMLN----------QRQGVLRITGKGGKE--RLVPLGEES-QHWLQRYLEQARPSLA 220 Query: 139 ---------RRREPLWAVT--DETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHM 187 PL+ T R + ++ A V+PH RHS+ H+ Sbjct: 221 ADKPIPADSDGDVPLFINTNLKRLSRQQFWRWIKHYAALVGIAPNKVSPHVLRHSFATHL 280 Query: 188 LYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 L H + +Q L GHR + ++YT + + A Sbjct: 281 LNHGADLRALQMLLGHRSISTTQIYTLIARQHLQQLHAQHHPR 323 >UniRef50_Q1IMN9 Tyrosine recombinase XerC subunit n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IMN9_ACIBL Length = 300 Score = 202 bits (514), Expect = 9e-51, Method: Composition-based stats. Identities = 39/244 (15%), Positives = 77/244 (31%), Gaps = 27/244 (11%) Query: 3 NVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFY-MPDQ- 60 +V + + G +L P E++ ++ MP+ Sbjct: 70 SVARALAALRSLYKWLAREGFVEQNPAALVATPKLPKKLPRVPTMEELNTVMDAEMPEAA 129 Query: 61 ----RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVR 116 R ++F L+ G+R E + + +R G+ K+ R Sbjct: 130 SFPERDALIFELLYGCGIRNSELTGINLDDIRWSNEAILIR----------GKGKKE--R 177 Query: 117 LVPLTDIS------YVRQMESWMITTRPRRREPLWAVTD--ETMRNWLKQAVRRAEADGV 168 VP D + Y+++ + + L + D + + V++ Sbjct: 178 FVPFGDAAAVAAKVYLKKRQDILAERHKSTNALLINLRDVQRLTSRSVGRIVKKIAV-AR 236 Query: 169 HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPF 228 V PHT RH++ H+L + IQ L GH + + YT++ + Sbjct: 237 GLPADVHPHTLRHAFGTHLLEEGADLRAIQELLGHERLATTQRYTQLSTRHVLEVYDKTH 296 Query: 229 TGDG 232 Sbjct: 297 PRAK 300 >UniRef50_Q97HE5 Tyrosine recombinase xerD n=18 Tax=Clostridium RepID=XERD_CLOAB Length = 292 Score = 202 bits (514), Expect = 1e-50, Method: Composition-based stats. Identities = 42/228 (18%), Positives = 79/228 (34%), Gaps = 39/228 (17%) Query: 22 GVDFATALSLRRMATSTGATPAYLLAPEVSALLFYM-----PDQRHHMLFATLWNTGMRI 76 G+ ++ M P L EV LL R + ++ TGM++ Sbjct: 86 GIMDDNPVTQYEMPKIRRNFPDILTIEEVEKLLMGPDGNTDKGIRDKAMLEIMYATGMKV 145 Query: 77 GEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITT 136 E LT +L K+ + R K++ R++P+ + V+ +E ++ Sbjct: 146 TELLNLTIYDINL------------KLSYIKCRGIKNKERIIPMGSYA-VKCLEIYLKVR 192 Query: 137 ---RPRRREPLWA------VTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHM 187 + + L+ +T + +KQ + +T RHS+ +H+ Sbjct: 193 TKLNVQNIDYLFFNLQGDKMTRQGFWKIIKQYA-----QESGIKKKINAYTLRHSFAVHL 247 Query: 188 LYHRQPRKVIQALAGHRDPRSMEVYTRVF----ALDMAATLAVPFTGD 231 L + K IQ L GH D + ++Y +A Sbjct: 248 LQNGADIKTIQELLGHSDMATTQIY---SGMYRKTRIAEVYKKTHPRA 292 >UniRef50_C7R6T2 Tyrosine recombinase XerC n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R6T2_KANKD Length = 299 Score = 202 bits (514), Expect = 1e-50, Method: Composition-based stats. Identities = 38/244 (15%), Positives = 78/244 (31%), Gaps = 23/244 (9%) Query: 2 NNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD-- 59 ++ ++ R ++ R P + ++ L MP+ Sbjct: 68 SSSALQLSAMRRFLEFLLSEKKITVNPAVGVRGPKKAKRLPKNIDVDSLNHFLDQMPEDE 127 Query: 60 ---QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVR 116 R + L+++G+R+ E + + V G+ K VR Sbjct: 128 PIEVRDKAMMELLYSSGIRLAELSAMDIDDLSFSDQSLRV----------LGKGNK--VR 175 Query: 117 LVPLTDISYVRQMESWMITTR---PRRREPLWAVTDETMRNWLKQAVRRAE--ADGVHFS 171 VP + S + + W+ E ++ + R + +R + + Sbjct: 176 EVPFGNSSK-KVLSLWLKERNNFAKNSDEKALFLSQQGNRLTNRAIQQRLAHWGKKLGLN 234 Query: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 + PH RHS H+L + +Q L GH + ++YT + +A T Sbjct: 235 DRLHPHKLRHSCATHVLESSSDLRAVQELLGHASISTTQIYTHLDFQHLAKTYDAAHPRA 294 Query: 232 GRDA 235 + Sbjct: 295 RKKK 298 >UniRef50_A4ECJ8 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4ECJ8_9ACTN Length = 220 Score = 202 bits (514), Expect = 1e-50, Method: Composition-based stats. Identities = 47/230 (20%), Positives = 77/230 (33%), Gaps = 31/230 (13%) Query: 19 IAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTG 73 A G+ A+S P L +V ALL R + L+ +G Sbjct: 2 AAEGIVEGDAVSAIASPKLPRDLPGVLTTQQVEALLKTPDTSTPAGLRDAAMLELLYASG 61 Query: 74 MRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWM 133 RI E L ES SE+ G+ K+ R+VPL + + ++ Sbjct: 62 ARISELAALNVESIGW----------SERTLRLWGKGSKE--RIVPLYRRA-LEATRLYI 108 Query: 134 ITTRP------RRREPL-----WAVTDETMRNWLKQAVRRAEADG--VHFSIPVTPHTFR 180 RP +RR+P ++ R RR + PH R Sbjct: 109 EEGRPELLAQAKRRDPATGPHPLLISARGNRMSAAMLRRRFHTLATLAGIPADIAPHAMR 168 Query: 181 HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 H++ +L + +Q L GH + ++YT + + +A Sbjct: 169 HTFATDLLEGGADLRSVQELLGHASLSTTQIYTHLTPDRLKRAVAQAHPR 218 >UniRef50_C1F4E0 Putative tyrosine recombinase XerC n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F4E0_ACIC5 Length = 310 Score = 201 bits (513), Expect = 1e-50, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 71/224 (31%), Gaps = 31/224 (13%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMPD------QRHHMLFATLWNTGMRIGEA 79 + +L P +++ L+ + R ++ L+ G+R E Sbjct: 101 QSPAALVATPKLPKHLPRVPTIEDMNRLVDASSEEVAAWPARDRLILELLYGCGIRNAEL 160 Query: 80 RMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR 139 + E VR G+ K+ R VP+ D + + + +++ + Sbjct: 161 VGINLEDIQWTNEAILVR----------GKGRKE--RYVPIGD-AAAQALRAYLPERNQK 207 Query: 140 -----RREPLWAVT------DETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHML 188 + + + + V++ V PHT RH++ H+L Sbjct: 208 LATAGKDSAALLLNARLRGQGRLTTRSVGRIVKQMAL-AQGLPADVHPHTLRHAFGTHLL 266 Query: 189 YHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDG 232 + IQ L GH + + YT++ + A Sbjct: 267 EEGADLRAIQELLGHERLSTTQRYTQLTVGQVEAVYDRTHPRAK 310 >UniRef50_A3EW74 Putative phage integrase family protein n=2 Tax=Leptospirillum sp. Group II RepID=A3EW74_9BACT Length = 314 Score = 201 bits (513), Expect = 1e-50, Method: Composition-based stats. Identities = 53/234 (22%), Positives = 84/234 (35%), Gaps = 26/234 (11%) Query: 21 PGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYM-----PDQRHHMLFATLWNTGMR 75 P +D T + P L E+ LL R + AT + +G+R Sbjct: 91 PAIDPDT----LPVPRLPRNLPGVLDEEEILRLLEAPDPKTDEGIRDRAILATFYASGLR 146 Query: 76 IGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMIT 135 + E LT + +L+ + V G+ K+ V D +++ ++ Sbjct: 147 VSELAELTLDRLNLNEEQIRV----------TGKGQKER---VAFLDGLSCARLKLYLER 193 Query: 136 TRPRRR--EPLWAVTDE--TMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHR 191 RP E +T + + A V+PHT RHS+ H+L H Sbjct: 194 VRPSTNTAEKTLFLTRRQTGFTRQGLWLLIKGYARQCGIDRSVSPHTLRHSFATHLLSHG 253 Query: 192 QPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAEILRTLPPL 245 + IQ L GH D ++ E+YT V +A LA R + P L Sbjct: 254 MDIRSIQILLGHSDIQTTEIYTHVDIRMLAEDLAKYHPRGKRPEKDGQAPSPSL 307 >UniRef50_UPI000185BEBB tyrosine recombinase XerC n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185BEBB Length = 304 Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats. Identities = 38/216 (17%), Positives = 63/216 (29%), Gaps = 28/216 (12%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMPD------QRHHMLFATLWNTGMRIGEA 79 A P L +V + + R + L+ TGMR+ E Sbjct: 107 ADPSLRLSTPKKHQHLPEVLSPEKVEEAIEKVSSEDSAVAARDLAIVELLYATGMRVEEL 166 Query: 80 RMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP- 138 + V G+ K R+VP + ++ W+ Sbjct: 167 CKADVSDVNFSRHIISVV----------GKGDKQ--RIVPFGAPAEA-ALKGWLQVRGNF 213 Query: 139 ---RRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRK 195 + E + R +QA R V+PH RHS M+ + Sbjct: 214 PASAQAEHALFLGVRGGRLNPRQARRVIHKWA-----DVSPHALRHSAATAMVEGGADLR 268 Query: 196 VIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 V+Q + GH + ++YT V A + Sbjct: 269 VVQEMLGHSSLATTQIYTHVSADRLREVHKRAHPRA 304 >UniRef50_B2UNK4 Integrase family protein n=2 Tax=Verrucomicrobiaceae RepID=B2UNK4_AKKM8 Length = 295 Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats. Identities = 47/217 (21%), Positives = 76/217 (35%), Gaps = 27/217 (12%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYMP------DQRHHMLFATLWNTGMRIGEAR 80 M + P L VS LL + R L ++ GMR+ E Sbjct: 92 DPSVFLEMPRQGLSLPHVLDQKTVSNLLESIDIQDIPLGCRDRALLEMIYACGMRVSEII 151 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR- 139 ESFD D V G+ K RLVP+ + + ++ ++ RP+ Sbjct: 152 NCKLESFDKDEAFVRV----------LGKGNK--TRLVPVGRSA-LDALQMYLEKGRPKL 198 Query: 140 ------RREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQP 193 L R ++Q +R A V PH RHS+ H+L + Sbjct: 199 VRTGTKSHIFLTVRGRPLTRERIRQILRE-RARAAGLEQHVFPHILRHSFATHLLENGAD 257 Query: 194 RKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 ++IQ + GH D + ++YT + + + Sbjct: 258 LRIIQEMLGHADISTTQIYTHLEQQRLNSIHHRFHPR 294 >UniRef50_D0LHX4 Integrase family protein n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LHX4_HALO1 Length = 395 Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats. Identities = 49/268 (18%), Positives = 80/268 (29%), Gaps = 69/268 (25%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYMP---------------------------- 58 R A P L + L+ Sbjct: 106 NPARGVRSPKRRKALPRALDVDDAFRLIEAPTRAPASGADAAAASPARNVGRSGGRSANR 165 Query: 59 ----------------------DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFV 96 R + L+ +G+R+GE L + D Sbjct: 166 AGATGTASAGKNKRAKTSREPLKLRDRAIAEVLYGSGLRVGECCALDLDDID------RA 219 Query: 97 RILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREP--------LWAVT 148 R+ S VR RRG+ K+ R+VPL + V +++++ RP R+P ++ Sbjct: 220 RLSSALVRVRRGKGGKE--RIVPLGRQA-VAALDAYL-NVRPLLRDPKTGARDPAALFLS 275 Query: 149 DETMRNWLKQAVRRAEADGVHFSI-PVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPR 207 R + R + TPH RHS+ H+L + IQ L GH Sbjct: 276 YRGTRLTTRSVQRMIGRNAQEVGAYEATPHALRHSFATHLLDSGVDLRAIQELLGHASLA 335 Query: 208 SMEVYTRVFALDMAATLAVPFTGDGRDA 235 S ++YT+V + + Sbjct: 336 STQIYTKVSLDHLMNVYDASHPRARASS 363 >UniRef50_A0L4T4 Tyrosine recombinase XerC subunit n=2 Tax=Bacteria RepID=A0L4T4_MAGSM Length = 335 Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats. Identities = 57/243 (23%), Positives = 88/243 (36%), Gaps = 32/243 (13%) Query: 3 NVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAP----EVSALLFYMP 58 N +SP+ LP AP V+ L +TP L + SA + Sbjct: 99 NPAAAVSSPKAPKRLPRAPSVEQTLNLLD-------KSTPRPLSPEASDFDTSAW-AVLR 150 Query: 59 DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLV 118 R L L++ G+RI EA L DL G VR G+ K R+V Sbjct: 151 SLRDTALLELLYSAGLRISEACNLDRADVDLRGGELRVR---------HGKGGKQ--RMV 199 Query: 119 PLTDISYVRQMESWMITTRPRRREPLWAVT-------DETMRNWLKQAVRRAEADGVHFS 171 PL + V +E+W+ R R + L + + + + Q + + Sbjct: 200 PLGRTA-VAAIEAWL-QARTRAKPQLDPMGPIFTGQLGKRLNSREGQRLLEKWRARLDLP 257 Query: 172 IPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 VTPH RH++ H+L + IQ + GH + + YT + +A Sbjct: 258 ESVTPHALRHAFATHLLQAGADLRAIQEMMGHASLSATQKYTHLDMQALAKVYDAAHPRA 317 Query: 232 GRD 234 R Sbjct: 318 QRR 320 >UniRef50_B2S2Y8 Integrase/recombinase n=4 Tax=Treponema RepID=B2S2Y8_TREPS Length = 306 Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 87/243 (35%), Gaps = 31/243 (12%) Query: 5 IPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----D 59 + ++ + +L V + + P L +V+ L +P Sbjct: 75 MAALHAFYQFLIL---EQVRPDNPMQDVDAPRRAYSLPRVLSPEQVNTFLQSIPLCTPGG 131 Query: 60 QRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVP 119 R LF ++ G+R+ EA L+ +E++ G+ K+ R+ P Sbjct: 132 VRDRALFELIYAAGLRVSEAVSLSLSDIFF----------AERLLKVTGKGNKE--RMAP 179 Query: 120 LTDISYVRQMESWMITTR--------PRRREP--LWAVTDETMRNWLKQAVRRAEADGVH 169 + + M+ ++ R P E + + R K +R + + Sbjct: 180 FGEQACYFLMQ-YIREARVRFTSAKHPENSEKKGAVFLNRQGGRLSRKGIWKRLQDIEIR 238 Query: 170 FSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFT 229 + HTFRHSY H+L +Q L GH D + +VYT V + A F+ Sbjct: 239 SGVETHVHTFRHSYATHLLAGGVDLHSVQCLLGHADIATTQVYTHVENGQLEACHRACFS 298 Query: 230 GDG 232 +G Sbjct: 299 SEG 301 >UniRef50_A3XLJ3 Tyrosine type site-specific recombinase n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XLJ3_9FLAO Length = 405 Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats. Identities = 61/218 (27%), Positives = 93/218 (42%), Gaps = 26/218 (11%) Query: 33 RMATSTGATPAYLLAPEVSALLFYMPDQRHHMLFATLWNTGMRIGEARMLTPESFDLDGV 92 + P L EV LL P+ +H + A L++ G+RIGE L ++ DLD + Sbjct: 200 QRPKKDKKLPVVLSRKEVIDLLRATPNLKHRTILALLYSAGLRIGELLALRCDAIDLDRM 259 Query: 93 RPFVRILSEKVRARRGRPPKDEVR-----LVPLTDISYVRQMESWMITTRPRRREPLWAV 147 + ++ +G+ KD +VPL + MES+ T Sbjct: 260 QVHIK---------KGKGRKDRTVKLAQAVVPL----LLNYMESYAPTHYLIPGRDGQGY 306 Query: 148 TDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPR 207 + +R +LK++ RA VTPHT RHSY HM+ H + IQ L GH P Sbjct: 307 SAGAIRTFLKKSCTRA-----GIKKAVTPHTLRHSYATHMMDHGVALRHIQELLGHAKPE 361 Query: 208 SMEVYTRVFALDMAAT---LAVPFTGDGRDAAEILRTL 242 + +YT V D+ L V + ++A E + L Sbjct: 362 TTMIYTHVSQQDLFEVANPLDVTISQITKNAKEQQKVL 399 >UniRef50_Q6A7J6 Integrase/recombinase n=4 Tax=Propionibacterium RepID=Q6A7J6_PROAC Length = 315 Score = 201 bits (512), Expect = 2e-50, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 72/231 (31%), Gaps = 28/231 (12%) Query: 16 LLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLF----------YMPDQRHHML 65 G+ A + A PA L + +L R + Sbjct: 98 RWAANEGLISADPTTALNSAKVPKRLPATLGVDQARHILDEAVAQARHDESPHGARDAAI 157 Query: 66 FATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISY 125 L+ G+R+GE L D V G+ K+ R VP+ + Sbjct: 158 LEVLYGGGLRVGELCGLDLGDVDRSRRTVKV----------TGKGDKE--RTVPMGAPA- 204 Query: 126 VRQMESWMITTR----PRRREPLWAVTD-ETMRNWLKQAVRRAEADGVHFSIPVTPHTFR 180 +R +++W+ P + L+ + + + V + S + PH R Sbjct: 205 LRAIDTWLPRREEWVGPHSGQALFLGARGRRIDQRVVRRVVHTDLRAEPDSPDLGPHGLR 264 Query: 181 HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 H+ H+L + +Q + GH + ++YT V + Sbjct: 265 HAMATHLLEGGADLRTVQDILGHESLATTQIYTHVSTERLRTAFRQAHPRA 315 >UniRef50_B3DX82 Site-specific recombinase XerD n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DX82_METI4 Length = 280 Score = 201 bits (511), Expect = 2e-50, Method: Composition-based stats. Identities = 41/230 (17%), Positives = 78/230 (33%), Gaps = 34/230 (14%) Query: 22 GVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ-------------------RH 62 ++ + S + P YL +V ALL + R Sbjct: 65 KINKESPFSQVMLPKPDRNLPRYLSLEQVQALLNAPQKKWEKEKEKGKKSRWNEWQWKRD 124 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 TL+ G+R+GE L ++F + V G+ K+ + L + Sbjct: 125 QAWLETLYGAGLRVGELSSLKRKNFFPSDLALLV----------EGKRKKERYCI--LGE 172 Query: 123 ISYVRQMESWMITTRPRRREPLWAVTD-ETMRNWLKQAVRRAEADGVHFSIPVTPHTFRH 181 ++ S++ + P E L+ + + + Q + ++PH RH Sbjct: 173 VATASLC-SYL-ESCPFESEFLFVSSRGKPLTPRFFQLSLKEYLAIAGLDQSISPHKLRH 230 Query: 182 SYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 ++ H+L + IQ L GH + ++YT V A + + Sbjct: 231 TFATHLLEGGADLRSIQELLGHAHLSTTQIYTAVSAEHLKESYFRTHPRA 280 >UniRef50_A7BDE1 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BDE1_9ACTO Length = 303 Score = 201 bits (511), Expect = 2e-50, Method: Composition-based stats. Identities = 41/226 (18%), Positives = 78/226 (34%), Gaps = 29/226 (12%) Query: 21 PGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPD---------QRHHMLFATLWN 71 G+ + +L + P+ L + LL D R+ + + Sbjct: 92 EGILVSDPAALLSSPRADQLLPSPLDESDARVLLNTARDEAAAGGASQIRNWAILELTYA 151 Query: 72 TGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMES 131 G+R+ E L S + D + V G+ K+ R+VP + ++ Sbjct: 152 CGLRVSEVCALDISSLNRDALTVRVV----------GKGNKE--RVVPYGPPA-ADALDH 198 Query: 132 WMITTRPR----RREPLWAVTDETMR--NWLKQAVRRAEADGVHFSIPVTPHTFRHSYIM 185 W++ RP+ R + D+ R + +++ A + PH RHS Sbjct: 199 WLVRGRPQLAGERSGNALFLGDKGGRIDPRIVRSMVHKTAARAGVH-DIAPHGLRHSTAT 257 Query: 186 HMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 H+L + +Q + GH + + YT V ++A Sbjct: 258 HLLQGGADLRAVQEMLGHSSLSTTQRYTHVDTARLSAIYQRAHPRA 303 >UniRef50_D1KE10 Site-specific recombinase XerC n=1 Tax=uncultured SUP05 cluster bacterium RepID=D1KE10_9GAMM Length = 292 Score = 200 bits (510), Expect = 3e-50, Method: Composition-based stats. Identities = 38/207 (18%), Positives = 73/207 (35%), Gaps = 17/207 (8%) Query: 33 RMATSTGATPAYLLAPEVSALL----FYMPDQRHHMLFATLWNTGMRIGEARMLTPESFD 88 + + P L + +L + R + L++ G+R+ E L E D Sbjct: 99 QSPKVAKSLPKTLDYERLVQMLTPKSSAFSELRDAAMVEVLYSCGLRVSELVGLDIEDVD 158 Query: 89 LDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRREPLWAVT 148 S+ G+ K VR PL + + + + ++ T + Sbjct: 159 ----------ASQGFLRVMGKGSK--VRYTPLGESA-QKSINRYLQKTSHTNKALFVNNR 205 Query: 149 DETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRS 208 E + Q + + A V + V PH RH+ H L + +Q GH+ +S Sbjct: 206 QERISTRTVQNIIKNRALSVGIKVNVHPHMLRHAAATHFLQSSHDLRSVQEFLGHKSIKS 265 Query: 209 MEVYTRVFALDMAATLAVPFTGDGRDA 235 +VYT + L+++ + + Sbjct: 266 TQVYTHLDFLELSKVYDKCHPRAKKSS 292 >UniRef50_A5D2W6 Tyrosine recombinase xerC n=5 Tax=Clostridia RepID=XERC_PELTS Length = 306 Score = 200 bits (510), Expect = 3e-50, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 75/226 (33%), Gaps = 38/226 (16%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARM 81 L P +L E L+ R L TL+ G+RI E Sbjct: 98 NPLLRVASPKLEKRLPRFLYEDEAKELVEAPDTKQPLGMRDRALLETLYAGGLRISE--- 154 Query: 82 LTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRR 141 L + +S G+ ++ RLVPL ++ V +++++ RPR Sbjct: 155 -------LVLLDLGDLDISSGYIRVTGKRARE--RLVPLGSMA-VEALQAYLAKARPRLM 204 Query: 142 EPLW---------------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMH 186 ++ +R L + V + V ++PHT RHS+ H Sbjct: 205 ANSVAKKINNALFLNCRGERLSARGIRKILDKYVEK-----VSLERKISPHTLRHSFATH 259 Query: 187 MLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDG 232 +L + +Q L GH S +VYT V + Sbjct: 260 LLNAGADLRSVQELMGHVRLSSTQVYTHVTGERLKKVYRKSHPRAK 305 >UniRef50_D2NTN2 Integrase n=1 Tax=Rothia mucilaginosa DY-18 RepID=D2NTN2_9MICC Length = 422 Score = 200 bits (509), Expect = 4e-50, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 75/226 (33%), Gaps = 34/226 (15%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFY-----MPDQRHH------MLFATLWNTGM 74 A R P L +++ LL D R + L+ +GM Sbjct: 211 ANPTRGMRTPKRESHLPPVLSREQMNQLLTTLQERRAQDPRDARLLRLEAVVEVLYASGM 270 Query: 75 RIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMI 134 RI E L +S D + K G+ K+ R+VPL + ++ + W+ Sbjct: 271 RISELTGLDLQSVD----------RANKTVRVLGKGNKE--RVVPLGTPA-LKALNRWVS 317 Query: 135 TTRPR------RREPLWAVTDETMRNWLKQA---VRRAEADGVHFSIPVTPHTFRHSYIM 185 RP+ + + R +Q + R + H RHS Sbjct: 318 YGRPQWIPEGSQGVTALFIGPRGGRANARQIREDLTRLLRTVENTQAS-GAHVLRHSAAT 376 Query: 186 HMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 H++ + +Q L GH + ++YT V +A T A Sbjct: 377 HLVDGGADIRSVQELLGHSSLATTQIYTHVSMKRLAETYARAHPRA 422 >UniRef50_B6WSE8 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WSE8_9DELT Length = 327 Score = 200 bits (509), Expect = 4e-50, Method: Composition-based stats. Identities = 58/236 (24%), Positives = 89/236 (37%), Gaps = 22/236 (9%) Query: 2 NNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQR 61 NNV +P++ P VD A A+ A + +P P L R Sbjct: 111 NNVAAQVRNPKQEQRHPRVLNVDQAFAVLDTPDALAGTGSPRI--PPATGDALAA----R 164 Query: 62 HHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLT 121 H L L+ +G+RI EA L LD V G+ ++ R+ PL+ Sbjct: 165 DHALAELLYGSGLRISEALGLDVTDLRLDESVVRV----------FGKGARE--RMSPLS 212 Query: 122 DISYVRQMESWMITTRPR--RREPLWAVTDETMRNWLKQAVRRAEADGVHFS-IPVTPHT 178 D S V + +W+ E V R ++A+RR E + PV+PH Sbjct: 213 DTS-VTALRAWLEQRGTLAPEGEKALFVGARGGRLDRREAMRRIERLCRNAGVEPVSPHA 271 Query: 179 FRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 RHS+ H+L + +Q L GH+ + + YTRV + + Sbjct: 272 LRHSFATHLLDAGADLRSVQELLGHQRLTTTQRYTRVSLERLMHLYDEAHPRAQKK 327 >UniRef50_Q9HIM5 Site-specific integrase/recombinase XerD related protein n=4 Tax=Thermoplasmatales RepID=Q9HIM5_THEAC Length = 283 Score = 199 bits (508), Expect = 5e-50, Method: Composition-based stats. Identities = 43/213 (20%), Positives = 75/213 (35%), Gaps = 17/213 (7%) Query: 22 GVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-DQRHHMLFATLWNTGMRIGEAR 80 +D ++L P YL E L+ D R + + + L TG+R+GE Sbjct: 83 ALDLRVPINLTP-PKRPSHMPVYLSEDEAKRLIEAASSDTRMYAIVSVLAYTGVRVGELC 141 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITT-RPR 139 L DL VR G+ KD R+V + V+ + S++ Sbjct: 142 NLKISDVDLQESIINVRS---------GKGDKD--RIV-IMAEECVKALGSYLDLRLSMD 189 Query: 140 RREPLWAVTDETMR--NWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVI 197 V++ +R + + R VTPH RH++ +L + + I Sbjct: 190 TDNDYLFVSNRRVRFDTSTIERMIRDLGKKAGIQKKVTPHVLRHTFATSVLRNGGDIRFI 249 Query: 198 QALAGHRDPRSMEVYTRVFALDMAATLAVPFTG 230 Q + GH + ++YT + + Sbjct: 250 QQILGHASVATTQIYTHLNDSALREMYTQHRPR 282 >UniRef50_D1N7Z4 Integrase family protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N7Z4_9BACT Length = 314 Score = 199 bits (508), Expect = 6e-50, Method: Composition-based stats. Identities = 34/234 (14%), Positives = 67/234 (28%), Gaps = 42/234 (17%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSAL---------LFYMPDQ------------RHHML 65 + P + ++ L + R + Sbjct: 95 NPFLKLPPIKADQPLPLVMSINQIDLLTKAVGEYWEMAAANGISKSDEAAEFAAARDLAM 154 Query: 66 FATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISY 125 +++ G+RI E L DL + RG+ K+ R+ L S Sbjct: 155 VEVIYSGGLRISETTGLDMGDIDL----------IGGIARVRGKGKKE--RIAVLGRPS- 201 Query: 126 VRQMESWMITTR-------PRRREPLWAVTDETMRNWLKQAVRRAEADGVHFSIPVTPHT 178 + + ++ P L ++ ++ + +TPH Sbjct: 202 QKALRNYFKLRSTVGGGRAPGSPVFLNKFGKRLTPRSFQRNLKNYLI-AANLPPDLTPHK 260 Query: 179 FRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDG 232 RHS+ H+L + +Q + GH + + ++YT V A M Sbjct: 261 LRHSFATHLLDAGADLRSVQEMLGHENLSTTQIYTHVSAERMKEVYKEAHPRAK 314 >UniRef50_B0TX96 Phage integrase family protein n=19 Tax=Francisella RepID=B0TX96_FRAP2 Length = 293 Score = 199 bits (507), Expect = 6e-50, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 78/215 (36%), Gaps = 19/215 (8%) Query: 27 TALSLRRMATSTGATPAYLLAPEVSALLFYMP----DQRHHMLFATLWNTGMRIGEARML 82 + + S+ P + E++ LL P + R F L++ G+R+ E + Sbjct: 92 NPTTGIKAPKSSKKLPKAVNTDELAYLLDIKPSNNIETRDIACFDLLYSCGIRLSELSSI 151 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRRE 142 + +++ V G+ K+ R+V + + + W+ T + Sbjct: 152 ELKDININQKSIRVI----------GKGNKE--RVVYFGSKTLIN-LNRWLNTRDTYSPK 198 Query: 143 -PLWAVTDETMRNWLKQAVRRAEADGVH-FSIPVTPHTFRHSYIMHMLYHRQPRKVIQAL 200 ++ + +R E + + PH RHS+ H+L + ++ L Sbjct: 199 CNFLFISQNGEHLTNRSIQKRIEIFAQKYATKHIHPHMLRHSFATHVLDSSKDLLAVKDL 258 Query: 201 AGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDA 235 GH D S ++YT + +A+ + + Sbjct: 259 LGHADISSTQIYTHLNFQQLASVFDKAHPRAKKKS 293 >UniRef50_Q0EWI0 Tyrosine recombinase XerD n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0EWI0_9PROT Length = 299 Score = 199 bits (507), Expect = 7e-50, Method: Composition-based stats. Identities = 42/213 (19%), Positives = 74/213 (34%), Gaps = 22/213 (10%) Query: 28 ALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEARML 82 + P + +V LL R + L+ TG+R+ E L Sbjct: 100 PARHLPKLRKSRPLPKMMSEHDVERLLAAPETEDPVGLRDRCMLELLYATGVRVSELVSL 159 Query: 83 TPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPRRRE 142 T ++D V G+ K+ RL+P + + + ++ W++ + Sbjct: 160 TRGQVEMDAGLLRVI----------GKGDKE--RLIPFGEEAG-QWLQQWLLLRPAKPAS 206 Query: 143 PLWAVTDET---MRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQA 199 P R ++R +P +PHT RH++ H+L H + +Q Sbjct: 207 PYLFAGRGGHAMTRQNFWLRIKRYATMAGIMPLP-SPHTLRHAFATHLLNHGADLRAVQM 265 Query: 200 LAGHRDPRSMEVYTRVFALDMAATLAVPFTGDG 232 L GH + E+YT V M + G Sbjct: 266 LLGHAHVTTTEIYTHVSRARMHDLVNHSHPLGG 298 >UniRef50_D0L0D4 Integrase family protein n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L0D4_HALNC Length = 329 Score = 199 bits (507), Expect = 7e-50, Method: Composition-based stats. Identities = 37/213 (17%), Positives = 73/213 (34%), Gaps = 23/213 (10%) Query: 33 RMATSTGATPAYLLAPEVSALLFYM--PD---QRHHMLFATLWNTGMRIGEARMLTPESF 87 + + P ++ LL D R +F ++++G+R+ E L Sbjct: 111 KSPKAAKKLPDAPAIETMNQLLDQPMVEDELLIRDRCMFELIYSSGLRVAELVRLDVHDI 170 Query: 88 DLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRP---RRREPL 144 D SE + G+ +++ RLVP+ + R + W+ + EP Sbjct: 171 D----------RSEGIARVTGK--REKTRLVPVGGKALDR-VALWLPIRKTLLKDTTEPA 217 Query: 145 WAVTDETMRNWLKQAVRRAEADG--VHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAG 202 + R ++ R H + PH RH++ H+L + +Q + G Sbjct: 218 LFLNRRGQRLTIRSVQMRLNRLAQQTHLGQTLHPHQLRHAFATHVLESSGDLRAVQEMLG 277 Query: 203 HRDPRSMEVYTRVFALDMAATLAVPFTGDGRDA 235 H + ++YT + +A Sbjct: 278 HESLSTTQIYTHLDFQRLAQVYESAHPRAHIKK 310 >UniRef50_Q9A437 Tyrosine recombinase xerD n=11 Tax=Alphaproteobacteria RepID=XERD_CAUCR Length = 305 Score = 199 bits (507), Expect = 7e-50, Method: Composition-based stats. Identities = 40/240 (16%), Positives = 78/240 (32%), Gaps = 28/240 (11%) Query: 10 SPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALL------FYMPDQRHH 63 + + + G + P L E+ LL R Sbjct: 78 AVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERDEIERLLAAASAKDSAQGLRLA 137 Query: 64 MLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDI 123 + ++ +G+RI E L + +G+ K+ RL PL D Sbjct: 138 CMIELIYASGLRISE----------LLALPLLALARDPAYLIVKGKGGKE--RLAPLNDA 185 Query: 124 SYVRQMESWMITT-----RPRRREPLWAVTD----ETMRNWLKQAVRRAEADGVHFSIPV 174 + ++++++ + ++ P + + Q + A V Sbjct: 186 ARA-AVKAYLVERPAFLPKGQKDSPWLFPSRGATGRLTPRRVGQLLEDAAIAAGIDRQKV 244 Query: 175 TPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRD 234 +PH RH++ H+L +VIQ L GH D + ++YT V +A + + Sbjct: 245 SPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHIVQTKHPLGRKK 304 >UniRef50_C7M6X5 Integrase family protein n=2 Tax=Capnocytophaga RepID=C7M6X5_CAPOD Length = 307 Score = 199 bits (506), Expect = 9e-50, Method: Composition-based stats. Identities = 41/237 (17%), Positives = 85/237 (35%), Gaps = 30/237 (12%) Query: 12 ERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALL------FYMPDQRHHML 65 ++ + I+P F + L + P E+ +L + R+ + Sbjct: 88 KKTKQIEISP---FEKGIFLLKTEKKHK-LP--FSEAEIEKVLSFFSSKDSFDEVRNRAV 141 Query: 66 FATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISY 125 TL+ TG+R E L D + + V G+ K+ R +P+ Sbjct: 142 IETLYATGIRRSELSGLKVSDVDFEQKQIKV----------LGKGDKE--RYIPII-PEL 188 Query: 126 VRQMESWMITT----RPRRREPLWAV-TDETMRNWLKQAVRRAEADGVHFSIPVTPHTFR 180 ++ +++ + ++ L+ V + + + L + + V V+PH R Sbjct: 189 ENTLKEYLVLREEVKNEKSQDYLFLVKNGKKIYSTLVYRIINSYFSVVTTKKDVSPHVLR 248 Query: 181 HSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAE 237 HS+ H+L + ++ L GH S +VYT ++ ++ E Sbjct: 249 HSFASHLLDNGADLYTVKELLGHSSLASTQVYTNTSLAELKKQYKKAHPRAKGNSNE 305 >UniRef50_C2D807 Possible integrase/recombinase XerD n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D807_9ACTN Length = 319 Score = 199 bits (506), Expect = 9e-50, Method: Composition-based stats. Identities = 41/255 (16%), Positives = 81/255 (31%), Gaps = 44/255 (17%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMPDQ------- 60 +S + + + + ++ + P L ++ LL Sbjct: 77 VSSIKGFHKFMVVEQICENHPTTNLKLPKKSFHLPDVLTQDQIIHLLDDPFKPQLLPAPK 136 Query: 61 ----------------RHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVR 104 R + L+ G+R+ E L ++S+++ Sbjct: 137 LTARKALSLKPQACFYRDKAILEMLYGCGLRVSELCGLNQGDV----------LVSDELV 186 Query: 105 ARRGRPPKDEVRLVPLTDIS---YVRQMESW--MITTRPRRREPLWAVTD--ETMRNWLK 157 G+ K+ RLVP + Y W ++ P+ + ++ R + Sbjct: 187 RVFGKGSKE--RLVPCLGTALESYQNYCTKWRALLACSPKTTDAVFLSVRGTRISRQAVF 244 Query: 158 QAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFA 217 V R + V + PHT RHSY HML +++Q L GH + ++YT + Sbjct: 245 SLVERYGSY-VGI-KGLHPHTLRHSYATHMLEGGMNLRIVQELLGHASISTTQLYTHIDL 302 Query: 218 LDMAATLAVPFTGDG 232 + + Sbjct: 303 THIRSEYMAAHPRAQ 317 >UniRef50_A9NHC9 Integrase/recombinase, XerD-like protein n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NHC9_ACHLI Length = 306 Score = 198 bits (505), Expect = 1e-49, Method: Composition-based stats. Identities = 36/231 (15%), Positives = 77/231 (33%), Gaps = 37/231 (16%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRHHMLFATLWNTGMRIGEAR 80 S + P + ++ L + R+ ++ L++ G+R E Sbjct: 93 ENIFSDIKAPKVAKTLPHIIDEEAINYLFDSIDTSKPLGYRNLVILDLLYSCGVRASELI 152 Query: 81 MLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTR--- 137 L + L + + G+ KD R + + + ++ ++ R Sbjct: 153 NLEIKDIYLSSGQILI----------HGKGKKD--RYI-ILHEKLIEEIRHYLSFVRVTL 199 Query: 138 -----PRRREPLW------AVTDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMH 186 ++ L+ +T +R L Q ++ + + PH RH++ Sbjct: 200 LSKGDDTNQQKLFINYKGGPLTVRGLRVILNQMIKDSGETYA-----IHPHMLRHAFATT 254 Query: 187 MLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGRDAAE 237 ML H +V+Q L GH +S ++YT V + + + Sbjct: 255 MLNHGADLRVVQELLGHEHLKSTQIYTHVSKEQLKEKYMQTHPRNQHNEKT 305 >UniRef50_A0QJ30 Tyrosine recombinase XerC n=4 Tax=Actinobacteria (class) RepID=A0QJ30_MYCA1 Length = 301 Score = 198 bits (505), Expect = 1e-49, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 73/221 (33%), Gaps = 28/221 (12%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFY---------MPDQRHHMLFATLWNTGMRI 76 A + ++ + PA L + + R ++ L+ TG+R+ Sbjct: 94 ADPAARLQVPKTHRTLPAVLRQDQALGAMAAAKNGAAQGDPIALRDRLIVEMLYATGIRV 153 Query: 77 GEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITT 136 E L + D ++ G+ K R VP + + +W+ Sbjct: 154 SELCGLDIDDVD----------TGRRLVRVLGKGNKQ--RSVPFGAPAG-EALHAWLADG 200 Query: 137 RPR----RREPLWAVTDETMRNWLKQA--VRRAEADGVHFSIPVTPHTFRHSYIMHMLYH 190 RP P + R ++QA V V + + PH RHS H+L Sbjct: 201 RPALANAESGPALLLGARGRRLDVRQARTVVHQTIAAVSGAPDMGPHGLRHSAATHLLEG 260 Query: 191 RQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 +V+Q L GH + ++YT V + A Sbjct: 261 GADLRVVQELLGHSSLATTQLYTHVAVSRLRAVHDQAHPRA 301 >UniRef50_D0Y3M6 Integrase family protein n=1 Tax=Caulobacter segnis ATCC 21756 RepID=D0Y3M6_9CAUL Length = 313 Score = 198 bits (505), Expect = 1e-49, Method: Composition-based stats. Identities = 42/248 (16%), Positives = 77/248 (31%), Gaps = 33/248 (13%) Query: 10 SPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALL-----------FYMP 58 + + + G + P L E+ LL Sbjct: 79 AVRQFYRFVLGEGWRTDDPSRRVAAPKAGRPLPKVLERAEIERLLAAATAPNTEMGDSAQ 138 Query: 59 DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLV 118 R + ++ +G+RI E L + +G+ K+ RL Sbjct: 139 GLRLACIIELIYASGLRISE----------LLALPLTALARDPAYLIVKGKGGKE--RLA 186 Query: 119 PLTDISYVRQMESWMITTRP------RRREPLWAVTDETMR---NWLKQAVRRAEADGVH 169 PL D + + +++ R + L+ + R + Q + A Sbjct: 187 PLNDAARA-AVNAYLAGRRTFLPKGAKESPWLFPSRGGSGRLTARRVGQLLDDAAIAAGI 245 Query: 170 FSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFT 229 V+PH RH++ H+L +VIQ L GH D + ++YT V +A + Sbjct: 246 DRDKVSPHVLRHAFATHLLEGGADLRVIQTLLGHADIATTQIYTHVAGEHLAHVVQTKHP 305 Query: 230 GDGRDAAE 237 + Sbjct: 306 LGRKKTPH 313 >UniRef50_C6NUW8 Site-specific recombinase XerD n=1 Tax=Acidithiobacillus caldus ATCC 51756 RepID=C6NUW8_9GAMM Length = 308 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 47/242 (19%), Positives = 85/242 (35%), Gaps = 26/242 (10%) Query: 1 MNNVIPLQNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-- 58 + +V +S R G + + PA EV ALL Sbjct: 80 LRSVARQLSSLRRFYAFAQREGWRGDDPSASLQHLHIGRHLPAVPSEGEVDALLAAPDRR 139 Query: 59 ---DQRHHMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEV 115 R + TL+ TG+R+ E L DL+ V G+ K+ Sbjct: 140 TVLGLRDAAMLETLYATGLRVSELVGLLCSQLDLEA----------GVVLTLGKGSKE-- 187 Query: 116 RLVPLTDISYVRQMESWMITTRP----RRREPLWAVTDET---MRNWLKQAVRRAEADGV 168 RL+P+ +++ + + ++ R ++ P +T R Q ++ A A Sbjct: 188 RLIPVGEVA-LETLHRYLREARGALLGHKQSPALFLTVRGEAMSRQRFWQTIK-AHATKA 245 Query: 169 HFSIPVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPF 228 +PH+ RH++ H+L H + +Q + GH + E+YT + + Sbjct: 246 GIRSAFSPHSLRHAFATHLLDHGADLRSVQLMLGHAQLNTTEIYTHIAQARLQNLHRQHH 305 Query: 229 TG 230 Sbjct: 306 PR 307 >UniRef50_C6R1G4 Tyrosine recombinase XerC n=1 Tax=Rothia mucilaginosa ATCC 25296 RepID=C6R1G4_9MICC Length = 358 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 45/226 (19%), Positives = 75/226 (33%), Gaps = 34/226 (15%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALLFY-----MPDQRHH------MLFATLWNTGM 74 A R P L +++ LL D R + L+ +GM Sbjct: 147 ANPTRGMRTPKRENHLPPVLSREQMNQLLTTLQERRAQDPRDARLLRLEAVVEVLYASGM 206 Query: 75 RIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMI 134 RI E L +S D + K G+ K+ R+VPL + ++ + W+ Sbjct: 207 RISELTGLDLQSVD----------RANKTVRVLGKGNKE--RVVPLGTPA-LKALNRWVS 253 Query: 135 TTRPR------RREPLWAVTDETMRNWLKQA---VRRAEADGVHFSIPVTPHTFRHSYIM 185 RP+ + + R +Q + R + H RHS Sbjct: 254 YGRPQWIPEGAQGVTALFIGPRGGRANARQIREDLTRLLRTVENTQAS-GAHVLRHSAAT 312 Query: 186 HMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 H++ + +Q L GH + ++YT V +A T A Sbjct: 313 HLVDGGADIRSVQELLGHSSLATTQIYTHVSMKRLAETYARAHPRA 358 >UniRef50_Q0C629 Tyrosine recombinase XerD n=2 Tax=Hyphomonadaceae RepID=Q0C629_HYPNA Length = 309 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 48/243 (19%), Positives = 80/243 (32%), Gaps = 21/243 (8%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYM-PDQRHHMLF 66 ++ R G + + P L EV L+ D+R L Sbjct: 72 LSAVRRFFRFLFQEGDRKDDPTARLDGPSPEREVPDVLSREEVGRLIEACGNDKRLKCLV 131 Query: 67 ATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYV 126 L+ G+R E L + ++ RG+ KD RL PL + + Sbjct: 132 ELLYGAGLRATELVTLRVGNLPRRKAGQWM----SADIIIRGKGGKD--RLCPLGRAALI 185 Query: 127 RQMESWMITT----------RPRRREPLWAVTDETM---RNWLKQAVRRAEADGVHFSIP 173 + W+ R ++ ++ + R L Q + + S Sbjct: 186 -ALSEWLEVREASLPDNPLMRSKQEGFVFPSRGKEGHLTRRRLGQMLEDLAGEAGLRSER 244 Query: 174 VTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGDGR 233 V PH RH+Y H+L +V+Q L GH D + ++YT V ++A L Sbjct: 245 VYPHALRHAYATHLLQGGADLRVVQTLLGHADIATTQIYTHVLTDELAELLETAHPMATA 304 Query: 234 DAA 236 Sbjct: 305 SKG 307 >UniRef50_C1ABE3 Tyrosine recombinase XerC n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1ABE3_GEMAT Length = 324 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 42/239 (17%), Positives = 81/239 (33%), Gaps = 39/239 (16%) Query: 17 LPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYM---------PDQRHHMLFA 67 + VD PAYL + L+ + D R+ + Sbjct: 101 MHRDERVDV-NPARAVGSPKLPRTLPAYLDRTQAETLMQHAATRAQSLEFTDVRNLAMLE 159 Query: 68 TLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVR 127 +++G+R+ E R + DL + VR G+ K+ R+VPL D + R Sbjct: 160 LFYSSGLRLSELRGVDLADLDLVSQQVKVR----------GKGRKE--RIVPLGDHA-QR 206 Query: 128 QMESWMITTRP------------RRREPLWAVTDETMRNWLKQAVRRAEAD---GVHFSI 172 + ++++ R +++ R +AV+ A V Sbjct: 207 ALRNYLVKRDALIAQASGGAVGRRVARGAVFLSERGAR-ISARAVQHAMVTLMSAVSEGA 265 Query: 173 PVTPHTFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 +T H+ RH++ H++ + +Q L GH + ++YT + Sbjct: 266 DLTTHSLRHTFATHLVDAGADLRAVQELLGHASISTTQIYTHTSVDRLKKVYRQAHPRA 324 >UniRef50_B0B7R6 Tyrosine recombinase xerC n=8 Tax=Chlamydia RepID=XERC_CHLT2 Length = 315 Score = 198 bits (503), Expect = 2e-49, Method: Composition-based stats. Identities = 42/232 (18%), Positives = 76/232 (32%), Gaps = 23/232 (9%) Query: 8 QNSPERVSLLPIAPGVDFATALSLRRMATSTGATPAYLLAPEVSALLFYMP-----DQRH 62 ++ + + + + + R P+ L +V AL+ R Sbjct: 92 LSAIKSFARFCVKNQLIPENPAEMIRGPRLPQELPSPLTYEQVLALMAAPELDKVTGFRD 151 Query: 63 HMLFATLWNTGMRIGEARMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTD 122 L +++G+RI E L D +R G+ K+ R+VP+T Sbjct: 152 RCLLELFYSSGLRISEITALNRADIDFQSHLLHIR----------GKGKKE--RIVPMTK 199 Query: 123 ISYVRQMESWMITTRP---RRREPLWAVTDETMRNWLKQAVRR--AEADGVHFSIPVTPH 177 ++ V+ ++ ++ + + R + R+ S +TPH Sbjct: 200 VA-VQWLQDYLNHPDRASVEQDHQACFLNRFGKRLSTRSIDRKFQQYLLKTGLSGSITPH 258 Query: 178 TFRHSYIMHMLYHRQPRKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFT 229 T RH+ H L K IQ L GH + +YT V Sbjct: 259 TIRHTIATHWLERGMDLKTIQLLLGHTSLETTTIYTHVSMKLKKQIHDETHP 310 >UniRef50_B6YR66 Site-specific recombinase XerC n=27 Tax=Bacteroidales RepID=B6YR66_AZOPC Length = 299 Score = 198 bits (503), Expect = 2e-49, Method: Composition-based stats. Identities = 40/218 (18%), Positives = 77/218 (35%), Gaps = 27/218 (12%) Query: 26 ATALSLRRMATSTGATPAYLLAPEVSALL------FYMPDQRHHMLFATLWNTGMRIGEA 79 + + + P ++ E++ LL D+R + ++TG+R E Sbjct: 97 SNPVKGIVGVRTGRPLPYFVRDREMNTLLLDLSKGEGFEDERDRTILEVFYSTGIRCSEL 156 Query: 80 RMLTPESFDLDGVRPFVRILSEKVRARRGRPPKDEVRLVPLTDISYVRQMESWMITTRPR 139 L E D + V G+ K RL+P + + ++ S+ T R Sbjct: 157 VGLNDEDIDFESCLIRV----------TGKGNKQ--RLIPFS--KTLEEILSYYKTIRDE 202 Query: 140 RR---EPLWAV---TDETMRNWLKQAVRRAEADGVHFSIPVTPHTFRHSYIMHMLYHRQP 193 + V N + + V++ +D + +PH RH++ ML + Sbjct: 203 TIWDVSKAFFVREDGRSLNYNIVYRIVKKRLSDIPNLPKR-SPHVLRHTFATSMLNNGAN 261 Query: 194 RKVIQALAGHRDPRSMEVYTRVFALDMAATLAVPFTGD 231 ++ L GH S E+YT + ++ T Sbjct: 262 LNAVKELLGHSSLASTEIYTHLTFEELKKTYKQAHPRA 299 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.312 0.168 0.579 Lambda K H 0.267 0.0517 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,582,895,203 Number of Sequences: 3077464 Number of extensions: 72877792 Number of successful extensions: 287856 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 5834 Number of HSP's successfully gapped in prelim test: 3641 Number of HSP's that attempted gapping in prelim test: 269296 Number of HSP's gapped (non-prelim): 10480 length of query: 246 length of database: 1,040,396,356 effective HSP length: 125 effective length of query: 121 effective length of database: 655,713,356 effective search space: 79341316076 effective search space used: 79341316076 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.6 bits) S2: 92 (39.7 bits)