BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for composition-based statistics: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (131 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_A7ZHC5 Transcriptional activatory protein CaiF n=15 Tax... 206 2e-52 UniRef50_P0AE58 Transcriptional activatory protein caiF n=66 Tax... 205 4e-52 UniRef50_C0ATT7 Putative uncharacterized protein n=2 Tax=Enterob... 181 8e-45 UniRef50_C5B8S0 Transcriptional activatory protein CaiF n=2 Tax=... 178 4e-44 UniRef50_B5QXF3 Putative uncharacterized protein n=31 Tax=Salmon... 93 3e-18 UniRef50_O85637 Positive regulator protein GrlA n=17 Tax=Enterob... 90 3e-17 UniRef50_C4RYB5 Putative uncharacterized protein n=1 Tax=Yersini... 46 4e-04 UniRef50_Q7N9P5 Similar to unknown protein n=2 Tax=Photorhabdus ... 41 0.011 UniRef50_Q9F504 YheC protein n=2 Tax=Escherichia coli RepID=Q9F5... 39 0.063 UniRef50_A9QNP9 Sch_V12 n=8 Tax=Salmonella enterica RepID=A9QNP9... 38 0.076 >UniRef50_A7ZHC5 Transcriptional activatory protein CaiF n=15 Tax=Enterobacteriaceae RepID=A7ZHC5_ECO24 Length = 131 Score = 206 bits (524), Expect = 2e-52, Method: Composition-based stats. Identities = 129/131 (98%), Positives = 130/131 (99%) Query: 1 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVK 60 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEV EISCEVK Sbjct: 1 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVAEISCEVK 60 Query: 61 MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQK 120 MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSR+KLVGVRKTPRIPAVPLTELNREQK Sbjct: 61 MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSRDKLVGVRKTPRIPAVPLTELNREQK 120 Query: 121 WQMMLSKSMRR 131 WQMMLSKSMRR Sbjct: 121 WQMMLSKSMRR 131 >UniRef50_P0AE58 Transcriptional activatory protein caiF n=66 Tax=Enterobacteriaceae RepID=CAIF_ECOLI Length = 131 Score = 205 bits (521), Expect = 4e-52, Method: Composition-based stats. Identities = 131/131 (100%), Positives = 131/131 (100%) Query: 1 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVK 60 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVK Sbjct: 1 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVK 60 Query: 61 MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQK 120 MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQK Sbjct: 61 MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQK 120 Query: 121 WQMMLSKSMRR 131 WQMMLSKSMRR Sbjct: 121 WQMMLSKSMRR 131 >UniRef50_C0ATT7 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=C0ATT7_9ENTR Length = 135 Score = 181 bits (458), Expect = 8e-45, Method: Composition-based stats. Identities = 62/128 (48%), Positives = 88/128 (68%), Gaps = 3/128 (2%) Query: 1 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVK 60 MCE Y+ KPLYL IA+W+ + RWV A+EI+ FDI A+N ++YILS+V EI CE K Sbjct: 1 MCEEYMNKPLYLSIADWVQEQERWVSAKEIAKKFDIPQCNAINIVSYILSDVKEIECETK 60 Query: 61 MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTP-RIPAVPLTELNREQ 119 +PN+LEGRGCQCQR++KV ID Q+Y+RL+ + + K + +P ++ ++ LN EQ Sbjct: 61 SVPNQLEGRGCQCQRMIKVSHIDPQLYSRLKGHVQGK--SSQSSPEKLASMIPHGLNHEQ 118 Query: 120 KWQMMLSK 127 K M + K Sbjct: 119 KMAMDVVK 126 >UniRef50_C5B8S0 Transcriptional activatory protein CaiF n=2 Tax=Edwardsiella RepID=C5B8S0_EDWI9 Length = 145 Score = 178 bits (452), Expect = 4e-44, Method: Composition-based stats. Identities = 71/141 (50%), Positives = 94/141 (66%), Gaps = 10/141 (7%) Query: 1 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVK 60 M Y ++PLYL +A W+M + RWV AREI+ FD+ KA+NT++YILS V EI+C+ K Sbjct: 5 MRREYAQEPLYLSVARWVMQQQRWVSAREIAQQFDLSPCKAINTVSYILSGVEEITCQTK 64 Query: 61 MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRN---------NSREKLVGVRKTPRIPA-V 110 +PN+LEGRGCQCQRL++V IDE I AR+ N N+ ++ V R+ V Sbjct: 65 TVPNQLEGRGCQCQRLIQVTHIDELIAARISNAINTDSEGANAEQQAVEAEAVARMAIRV 124 Query: 111 PLTELNREQKWQMMLSKSMRR 131 P ELNREQKWQ MLSK+ R+ Sbjct: 125 PPDELNREQKWQWMLSKAQRK 145 >UniRef50_B5QXF3 Putative uncharacterized protein n=31 Tax=Salmonella enterica RepID=B5QXF3_SALEP Length = 170 Score = 92.9 bits (229), Expect = 3e-18, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Query: 3 EGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEIS--CEVK 60 Y ++PLY+++A W + + WV +I+ F I +A + Y+ S+ + + C + Sbjct: 37 RQYADEPLYIIVAHWCLLQQNWVQRNQIAEAFHITARRASYLIAYLRSKTSRVVSICRHQ 96 Query: 61 MIPNK 65 +PNK Sbjct: 97 TLPNK 101 >UniRef50_O85637 Positive regulator protein GrlA n=17 Tax=Enterobacteriaceae RepID=O85637_ECOLX Length = 137 Score = 89.8 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 3 EGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMI 62 + Y +PLY+L++ W + +W+ +I+ F I +A +TYI +IS V+ + Sbjct: 17 KNYDGEPLYILVSLWCKLQEKWISRNDIAEAFGINLRRASFIITYISRRKEKISFRVRYV 76 >UniRef50_C4RYB5 Putative uncharacterized protein n=1 Tax=Yersinia bercovieri ATCC 43970 RepID=C4RYB5_YERBE Length = 145 Score = 45.9 bits (107), Expect = 4e-04, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%) Query: 9 PLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEG 68 PLY+ +A W + + ++S F I +A + +TYI E K + N G Sbjct: 32 PLYMAVAYWGLLKKSPFTRDDLSAAFHITVRRAADVMTYIYIERQNCITSKKSLVNIGSG 91 Query: 69 RGCQCQRLVKVVD 81 C +++ V + Sbjct: 92 HSCLYLQVLAVAE 104 >UniRef50_Q7N9P5 Similar to unknown protein n=2 Tax=Photorhabdus RepID=Q7N9P5_PHOLL Length = 166 Score = 41.2 bits (95), Expect = 0.011, Method: Composition-based stats. Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 12/124 (9%) Query: 7 EKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTE-ISCEVKMIPNK 65 + PLY+ +A W + + EIS F + +A + + YI +E + I+CE Sbjct: 47 DTPLYMAVAYWGLLKGSGFTKSEISQVFRVTERRATDVMNYIYNERRDVIACEKVFF--- 103 Query: 66 LEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQKWQ-MM 124 E +G + Q L+ ++ + + + + L++ N W+ Sbjct: 104 REKQGSRRQMLIVTAVVEPM-------PQKGQASVTKTVKSTRSRTLSQANHMCIWRTWF 156 Query: 125 LSKS 128 L ++ Sbjct: 157 LQRA 160 >UniRef50_Q9F504 YheC protein n=2 Tax=Escherichia coli RepID=Q9F504_ECOLX Length = 168 Score = 38.5 bits (88), Expect = 0.063, Method: Composition-based stats. Identities = 17/62 (27%), Positives = 35/62 (56%), Gaps = 1/62 (1%) Query: 9 PLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTE-ISCEVKMIPNKLE 67 PLY+++A W + N+ + ++S +F I ++ + LTYI E + I+ + + N+ + Sbjct: 40 PLYIIVAYWGLRNNKTLTTTDVSRNFLITQQQSYDVLTYIYQEAQKQITATKRTLFNEHK 99 Query: 68 GR 69 R Sbjct: 100 RR 101 >UniRef50_A9QNP9 Sch_V12 n=8 Tax=Salmonella enterica RepID=A9QNP9_SALET Length = 169 Score = 38.2 bits (87), Expect = 0.076, Method: Composition-based stats. Identities = 24/101 (23%), Positives = 42/101 (41%), Gaps = 8/101 (7%) Query: 10 LYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSE--VTEISCEVKMIPNKLE 67 LY +A W + R ++S F IE +A L YI + +I + ++ P Sbjct: 41 LYRAVAWWGLFLGREFTRDDVSEAFSIEPRRASGILNYICNRHNDDDICFDSRLHPV--- 97 Query: 68 GRGCQCQRLVKVVDID--EQIYARLRNNSREKLVGVRKTPR 106 RG + Q +V++ ++ R R + V R+ R Sbjct: 98 -RGGRAQLVVRIRAVESRPDTIRRQRTDRPGGKVSDRQYDR 137 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A7ZHC5 Transcriptional activatory protein CaiF n=15 Tax... 198 4e-50 UniRef50_P0AE58 Transcriptional activatory protein caiF n=66 Tax... 198 6e-50 UniRef50_C0ATT7 Putative uncharacterized protein n=2 Tax=Enterob... 172 2e-42 UniRef50_C5B8S0 Transcriptional activatory protein CaiF n=2 Tax=... 171 5e-42 UniRef50_C4RYB5 Putative uncharacterized protein n=1 Tax=Yersini... 100 2e-20 UniRef50_B5QXF3 Putative uncharacterized protein n=31 Tax=Salmon... 91 1e-17 UniRef50_O85637 Positive regulator protein GrlA n=17 Tax=Enterob... 87 2e-16 Sequences not found previously or not previously below threshold: UniRef50_Q7N9P5 Similar to unknown protein n=2 Tax=Photorhabdus ... 60 2e-08 UniRef50_Q9F504 YheC protein n=2 Tax=Escherichia coli RepID=Q9F5... 48 8e-05 UniRef50_A9QNP9 Sch_V12 n=8 Tax=Salmonella enterica RepID=A9QNP9... 46 3e-04 UniRef50_D0ZEM3 Putative uncharacterized protein n=1 Tax=Edwards... 39 0.053 >UniRef50_A7ZHC5 Transcriptional activatory protein CaiF n=15 Tax=Enterobacteriaceae RepID=A7ZHC5_ECO24 Length = 131 Score = 198 bits (504), Expect = 4e-50, Method: Composition-based stats. Identities = 129/131 (98%), Positives = 130/131 (99%) Query: 1 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVK 60 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEV EISCEVK Sbjct: 1 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVAEISCEVK 60 Query: 61 MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQK 120 MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSR+KLVGVRKTPRIPAVPLTELNREQK Sbjct: 61 MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSRDKLVGVRKTPRIPAVPLTELNREQK 120 Query: 121 WQMMLSKSMRR 131 WQMMLSKSMRR Sbjct: 121 WQMMLSKSMRR 131 >UniRef50_P0AE58 Transcriptional activatory protein caiF n=66 Tax=Enterobacteriaceae RepID=CAIF_ECOLI Length = 131 Score = 198 bits (502), Expect = 6e-50, Method: Composition-based stats. Identities = 131/131 (100%), Positives = 131/131 (100%) Query: 1 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVK 60 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVK Sbjct: 1 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVK 60 Query: 61 MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQK 120 MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQK Sbjct: 61 MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQK 120 Query: 121 WQMMLSKSMRR 131 WQMMLSKSMRR Sbjct: 121 WQMMLSKSMRR 131 >UniRef50_C0ATT7 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=C0ATT7_9ENTR Length = 135 Score = 172 bits (437), Expect = 2e-42, Method: Composition-based stats. Identities = 62/128 (48%), Positives = 88/128 (68%), Gaps = 3/128 (2%) Query: 1 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVK 60 MCE Y+ KPLYL IA+W+ + RWV A+EI+ FDI A+N ++YILS+V EI CE K Sbjct: 1 MCEEYMNKPLYLSIADWVQEQERWVSAKEIAKKFDIPQCNAINIVSYILSDVKEIECETK 60 Query: 61 MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTP-RIPAVPLTELNREQ 119 +PN+LEGRGCQCQR++KV ID Q+Y+RL+ + + K + +P ++ ++ LN EQ Sbjct: 61 SVPNQLEGRGCQCQRMIKVSHIDPQLYSRLKGHVQGK--SSQSSPEKLASMIPHGLNHEQ 118 Query: 120 KWQMMLSK 127 K M + K Sbjct: 119 KMAMDVVK 126 >UniRef50_C5B8S0 Transcriptional activatory protein CaiF n=2 Tax=Edwardsiella RepID=C5B8S0_EDWI9 Length = 145 Score = 171 bits (434), Expect = 5e-42, Method: Composition-based stats. Identities = 71/141 (50%), Positives = 94/141 (66%), Gaps = 10/141 (7%) Query: 1 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVK 60 M Y ++PLYL +A W+M + RWV AREI+ FD+ KA+NT++YILS V EI+C+ K Sbjct: 5 MRREYAQEPLYLSVARWVMQQQRWVSAREIAQQFDLSPCKAINTVSYILSGVEEITCQTK 64 Query: 61 MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRN---------NSREKLVGVRKTPRIPA-V 110 +PN+LEGRGCQCQRL++V IDE I AR+ N N+ ++ V R+ V Sbjct: 65 TVPNQLEGRGCQCQRLIQVTHIDELIAARISNAINTDSEGANAEQQAVEAEAVARMAIRV 124 Query: 111 PLTELNREQKWQMMLSKSMRR 131 P ELNREQKWQ MLSK+ R+ Sbjct: 125 PPDELNREQKWQWMLSKAQRK 145 >UniRef50_C4RYB5 Putative uncharacterized protein n=1 Tax=Yersinia bercovieri ATCC 43970 RepID=C4RYB5_YERBE Length = 145 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 18/73 (24%), Positives = 32/73 (43%) Query: 9 PLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEG 68 PLY+ +A W + + ++S F I +A + +TYI E K + N G Sbjct: 32 PLYMAVAYWGLLKKSPFTRDDLSAAFHITVRRAADVMTYIYIERQNCITSKKSLVNIGSG 91 Query: 69 RGCQCQRLVKVVD 81 C +++ V + Sbjct: 92 HSCLYLQVLAVAE 104 >UniRef50_B5QXF3 Putative uncharacterized protein n=31 Tax=Salmonella enterica RepID=B5QXF3_SALEP Length = 170 Score = 90.9 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 18/65 (27%), Positives = 35/65 (53%), Gaps = 2/65 (3%) Query: 3 EGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEI--SCEVK 60 Y ++PLY+++A W + + WV +I+ F I +A + Y+ S+ + + C + Sbjct: 37 RQYADEPLYIIVAHWCLLQQNWVQRNQIAEAFHITARRASYLIAYLRSKTSRVVSICRHQ 96 Query: 61 MIPNK 65 +PNK Sbjct: 97 TLPNK 101 >UniRef50_O85637 Positive regulator protein GrlA n=17 Tax=Enterobacteriaceae RepID=O85637_ECOLX Length = 137 Score = 86.7 bits (213), Expect = 2e-16, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 3 EGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMI 62 + Y +PLY+L++ W + +W+ +I+ F I +A +TYI +IS V+ + Sbjct: 17 KNYDGEPLYILVSLWCKLQEKWISRNDIAEAFGINLRRASFIITYISRRKEKISFRVRYV 76 >UniRef50_Q7N9P5 Similar to unknown protein n=2 Tax=Photorhabdus RepID=Q7N9P5_PHOLL Length = 166 Score = 59.7 bits (143), Expect = 2e-08, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 10/123 (8%) Query: 7 EKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKL 66 + PLY+ +A W + + EIS F + +A + + YI +E ++ K+ + Sbjct: 47 DTPLYMAVAYWGLLKGSGFTKSEISQVFRVTERRATDVMNYIYNERRDVIACEKVFFREK 106 Query: 67 EGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQKWQ-MML 125 +G Q + VV+ Q + + + + L++ N W+ L Sbjct: 107 QGSRRQMLIVTAVVEPMPQ---------KGQASVTKTVKSTRSRTLSQANHMCIWRTWFL 157 Query: 126 SKS 128 ++ Sbjct: 158 QRA 160 >UniRef50_Q9F504 YheC protein n=2 Tax=Escherichia coli RepID=Q9F504_ECOLX Length = 168 Score = 48.2 bits (113), Expect = 8e-05, Method: Composition-based stats. Identities = 21/79 (26%), Positives = 43/79 (54%), Gaps = 5/79 (6%) Query: 9 PLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTE-ISCEVKMIPNKLE 67 PLY+++A W + N+ + ++S +F I ++ + LTYI E + I+ + + N+ + Sbjct: 40 PLYIIVAYWGLRNNKTLTTTDVSRNFLITQQQSYDVLTYIYQEAQKQITATKRTLFNEHK 99 Query: 68 GRGCQCQRLVKVVDIDEQI 86 R +++DID+ I Sbjct: 100 RR----ISAFRILDIDKGI 114 >UniRef50_A9QNP9 Sch_V12 n=8 Tax=Salmonella enterica RepID=A9QNP9_SALET Length = 169 Score = 46.2 bits (108), Expect = 3e-04, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 4/99 (4%) Query: 10 LYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEV--TEISCEVKMIPNKLE 67 LY +A W + R ++S F IE +A L YI + +I + ++ P + Sbjct: 41 LYRAVAWWGLFLGREFTRDDVSEAFSIEPRRASGILNYICNRHNDDDICFDSRLHPVRG- 99 Query: 68 GRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPR 106 GR R ++ V+ R R + V R+ R Sbjct: 100 GRAQLVVR-IRAVESRPDTIRRQRTDRPGGKVSDRQYDR 137 >UniRef50_D0ZEM3 Putative uncharacterized protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZEM3_EDWTE Length = 372 Score = 38.9 bits (89), Expect = 0.053, Method: Composition-based stats. Identities = 14/50 (28%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 9 PLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCE 58 PL L +A W + +N + ++++ F I +A L LS + I C+ Sbjct: 52 PLDLSVAWWGLYKNAPITRVDVALAFRISPRQAGKLLDS-LSLIDSIVCQ 100 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A7ZHC5 Transcriptional activatory protein CaiF n=15 Tax... 183 2e-45 UniRef50_P0AE58 Transcriptional activatory protein caiF n=66 Tax... 181 4e-45 UniRef50_C0ATT7 Putative uncharacterized protein n=2 Tax=Enterob... 162 3e-39 UniRef50_C5B8S0 Transcriptional activatory protein CaiF n=2 Tax=... 156 3e-37 UniRef50_Q7N9P5 Similar to unknown protein n=2 Tax=Photorhabdus ... 135 5e-31 UniRef50_A9QNP9 Sch_V12 n=8 Tax=Salmonella enterica RepID=A9QNP9... 106 4e-22 UniRef50_C4RYB5 Putative uncharacterized protein n=1 Tax=Yersini... 104 9e-22 UniRef50_B5QXF3 Putative uncharacterized protein n=31 Tax=Salmon... 91 1e-17 UniRef50_Q9F504 YheC protein n=2 Tax=Escherichia coli RepID=Q9F5... 88 7e-17 UniRef50_O85637 Positive regulator protein GrlA n=17 Tax=Enterob... 84 1e-15 Sequences not found previously or not previously below threshold: UniRef50_D0ZEM3 Putative uncharacterized protein n=1 Tax=Edwards... 46 4e-04 >UniRef50_A7ZHC5 Transcriptional activatory protein CaiF n=15 Tax=Enterobacteriaceae RepID=A7ZHC5_ECO24 Length = 131 Score = 183 bits (463), Expect = 2e-45, Method: Composition-based stats. Identities = 129/131 (98%), Positives = 130/131 (99%) Query: 1 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVK 60 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEV EISCEVK Sbjct: 1 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVAEISCEVK 60 Query: 61 MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQK 120 MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSR+KLVGVRKTPRIPAVPLTELNREQK Sbjct: 61 MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSRDKLVGVRKTPRIPAVPLTELNREQK 120 Query: 121 WQMMLSKSMRR 131 WQMMLSKSMRR Sbjct: 121 WQMMLSKSMRR 131 >UniRef50_P0AE58 Transcriptional activatory protein caiF n=66 Tax=Enterobacteriaceae RepID=CAIF_ECOLI Length = 131 Score = 181 bits (460), Expect = 4e-45, Method: Composition-based stats. Identities = 131/131 (100%), Positives = 131/131 (100%) Query: 1 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVK 60 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVK Sbjct: 1 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVK 60 Query: 61 MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQK 120 MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQK Sbjct: 61 MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQK 120 Query: 121 WQMMLSKSMRR 131 WQMMLSKSMRR Sbjct: 121 WQMMLSKSMRR 131 >UniRef50_C0ATT7 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=C0ATT7_9ENTR Length = 135 Score = 162 bits (410), Expect = 3e-39, Method: Composition-based stats. Identities = 61/127 (48%), Positives = 85/127 (66%), Gaps = 1/127 (0%) Query: 1 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVK 60 MCE Y+ KPLYL IA+W+ + RWV A+EI+ FDI A+N ++YILS+V EI CE K Sbjct: 1 MCEEYMNKPLYLSIADWVQEQERWVSAKEIAKKFDIPQCNAINIVSYILSDVKEIECETK 60 Query: 61 MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQK 120 +PN+LEGRGCQCQR++KV ID Q+Y+RL+ + + K ++ ++ LN EQK Sbjct: 61 SVPNQLEGRGCQCQRMIKVSHIDPQLYSRLKGHVQGKSSQS-SPEKLASMIPHGLNHEQK 119 Query: 121 WQMMLSK 127 M + K Sbjct: 120 MAMDVVK 126 >UniRef50_C5B8S0 Transcriptional activatory protein CaiF n=2 Tax=Edwardsiella RepID=C5B8S0_EDWI9 Length = 145 Score = 156 bits (393), Expect = 3e-37, Method: Composition-based stats. Identities = 70/141 (49%), Positives = 93/141 (65%), Gaps = 10/141 (7%) Query: 1 MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVK 60 M Y ++PLYL +A W+M + RWV AREI+ FD+ KA+NT++YILS V EI+C+ K Sbjct: 5 MRREYAQEPLYLSVARWVMQQQRWVSAREIAQQFDLSPCKAINTVSYILSGVEEITCQTK 64 Query: 61 MIPNKLEGRGCQCQRLVKVVDIDEQIYARLRN---------NSREKLVGVRKTPRIPAV- 110 +PN+LEGRGCQCQRL++V IDE I AR+ N N+ ++ V R+ Sbjct: 65 TVPNQLEGRGCQCQRLIQVTHIDELIAARISNAINTDSEGANAEQQAVEAEAVARMAIRV 124 Query: 111 PLTELNREQKWQMMLSKSMRR 131 P ELNREQKWQ MLSK+ R+ Sbjct: 125 PPDELNREQKWQWMLSKAQRK 145 >UniRef50_Q7N9P5 Similar to unknown protein n=2 Tax=Photorhabdus RepID=Q7N9P5_PHOLL Length = 166 Score = 135 bits (339), Expect = 5e-31, Method: Composition-based stats. Identities = 23/123 (18%), Positives = 49/123 (39%), Gaps = 10/123 (8%) Query: 7 EKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKL 66 + PLY+ +A W + + EIS F + +A + + YI +E ++ K+ + Sbjct: 47 DTPLYMAVAYWGLLKGSGFTKSEISQVFRVTERRATDVMNYIYNERRDVIACEKVFFREK 106 Query: 67 EGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQKWQ-MML 125 +G Q + VV+ Q + + + + L++ N W+ L Sbjct: 107 QGSRRQMLIVTAVVEPMPQ---------KGQASVTKTVKSTRSRTLSQANHMCIWRTWFL 157 Query: 126 SKS 128 ++ Sbjct: 158 QRA 160 >UniRef50_A9QNP9 Sch_V12 n=8 Tax=Salmonella enterica RepID=A9QNP9_SALET Length = 169 Score = 106 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 24/99 (24%), Positives = 40/99 (40%), Gaps = 4/99 (4%) Query: 10 LYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEV--TEISCEVKMIPNKLE 67 LY +A W + R ++S F IE +A L YI + +I + ++ P + Sbjct: 41 LYRAVAWWGLFLGREFTRDDVSEAFSIEPRRASGILNYICNRHNDDDICFDSRLHPVRG- 99 Query: 68 GRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPR 106 GR R ++ V+ R R + V R+ R Sbjct: 100 GRAQLVVR-IRAVESRPDTIRRQRTDRPGGKVSDRQYDR 137 >UniRef50_C4RYB5 Putative uncharacterized protein n=1 Tax=Yersinia bercovieri ATCC 43970 RepID=C4RYB5_YERBE Length = 145 Score = 104 bits (259), Expect = 9e-22, Method: Composition-based stats. Identities = 22/119 (18%), Positives = 43/119 (36%), Gaps = 12/119 (10%) Query: 9 PLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEG 68 PLY+ +A W + + ++S F I +A + +TYI E K + N G Sbjct: 32 PLYMAVAYWGLLKKSPFTRDDLSAAFHITVRRAADVMTYIYIERQNCITSKKSLVNIGSG 91 Query: 69 RGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQKWQMMLSK 127 C +++ V + R E+ +++ W +L++ Sbjct: 92 HSCLYLQVLAVAEPAP---PRQAFRPPERRTSNAYNKE---------GQQELWHWLLTR 138 >UniRef50_B5QXF3 Putative uncharacterized protein n=31 Tax=Salmonella enterica RepID=B5QXF3_SALEP Length = 170 Score = 90.6 bits (223), Expect = 1e-17, Method: Composition-based stats. Identities = 19/77 (24%), Positives = 38/77 (49%), Gaps = 2/77 (2%) Query: 3 EGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEI--SCEVK 60 Y ++PLY+++A W + + WV +I+ F I +A + Y+ S+ + + C + Sbjct: 37 RQYADEPLYIIVAHWCLLQQNWVQRNQIAEAFHITARRASYLIAYLRSKTSRVVSICRHQ 96 Query: 61 MIPNKLEGRGCQCQRLV 77 +PNK R++ Sbjct: 97 TLPNKARRYEIYVIRVL 113 >UniRef50_Q9F504 YheC protein n=2 Tax=Escherichia coli RepID=Q9F504_ECOLX Length = 168 Score = 88.3 bits (217), Expect = 7e-17, Method: Composition-based stats. Identities = 28/126 (22%), Positives = 57/126 (45%), Gaps = 16/126 (12%) Query: 9 PLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTE-ISCEVKMIPNKLE 67 PLY+++A W + N+ + ++S +F I ++ + LTYI E + I+ + + N+ + Sbjct: 40 PLYIIVAYWGLRNNKTLTTTDVSRNFLITQQQSYDVLTYIYQEAQKQITATKRTLFNEHK 99 Query: 68 GRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNRE------QKW 121 R +++DID+ I + +K + IP V + E + Sbjct: 100 RR----ISAFRILDIDKGILR-----TPKKEIAYASYDNIPTVTMKSTRCEIQDSFTELR 150 Query: 122 QMMLSK 127 + M S+ Sbjct: 151 RWMCSR 156 >UniRef50_O85637 Positive regulator protein GrlA n=17 Tax=Enterobacteriaceae RepID=O85637_ECOLX Length = 137 Score = 84.1 bits (206), Expect = 1e-15, Method: Composition-based stats. Identities = 17/60 (28%), Positives = 32/60 (53%) Query: 3 EGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMI 62 + Y +PLY+L++ W + +W+ +I+ F I +A +TYI +IS V+ + Sbjct: 17 KNYDGEPLYILVSLWCKLQEKWISRNDIAEAFGINLRRASFIITYISRRKEKISFRVRYV 76 >UniRef50_D0ZEM3 Putative uncharacterized protein n=1 Tax=Edwardsiella tarda EIB202 RepID=D0ZEM3_EDWTE Length = 372 Score = 45.6 bits (106), Expect = 4e-04, Method: Composition-based stats. Identities = 13/50 (26%), Positives = 25/50 (50%), Gaps = 1/50 (2%) Query: 9 PLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCE 58 PL L +A W + +N + ++++ F I +A L + S + I C+ Sbjct: 52 PLDLSVAWWGLYKNAPITRVDVALAFRISPRQAGKLLDSL-SLIDSIVCQ 100 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.307 0.121 0.313 Lambda K H 0.267 0.0368 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 572,536,671 Number of Sequences: 3077464 Number of extensions: 13577071 Number of successful extensions: 42118 Number of sequences better than 1.0e-01: 11 Number of HSP's better than 0.1 without gapping: 29 Number of HSP's successfully gapped in prelim test: 3 Number of HSP's that attempted gapping in prelim test: 42079 Number of HSP's gapped (non-prelim): 32 length of query: 131 length of database: 1,040,396,356 effective HSP length: 96 effective length of query: 35 effective length of database: 744,959,812 effective search space: 26073593420 effective search space used: 26073593420 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 87 (38.3 bits)