Phyre 2 alignment of P29744 with d1dt9a3

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Job Description | P29744
Confidence | 4.35% | Date | Thu Jan 5 11:45:40 GMT 2012
Rank | 28 | Aligned Residues | 55
% Identity | 24% | Template | d1dt9a3
SCOP info | N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 | N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1 | N-terminal domain of eukaryotic peptide chain release factor subunit 1, ERF1
Resolution | 2.70

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 83 | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | V | T | T | A | I | Q | N | A | Q | E | K | I | V | Y | A | S | N | G | T | L | S | D | D | D | R | A | S | L | A | T | D | I | Q | G | L | R | D | Q | L | L | N | L | A | N | T | T | D | G | N | G | R | Y | I | F | A | G | Y
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | I | S | R | V | A | K | M | L | A | D | E | F | G | T | A | S | N | . | I | K | S | R | V | N | R | L | S | V | L | G | A | I | T | S | V | Q | Q | R | L | K | . | L | Y | N | K | V | P | P | N | G | L | V | V | Y | C | G | T
Template Known Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | . |  |  |  | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | . | T |  | S | S |  |  | T | T |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 45 | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . |  | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . |  | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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