10/01/2012 05:55:18 : INFO  : Run start: Tue Jan 10 05:55:18 GMT 2012
10/01/2012 05:55:20 : INFO  : Initialised job
10/01/2012 05:55:21 : INFO  : Renaming log file 'phyre2_20120110_055518.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/4c3a3a93aa9dada0/phyre_20120110_055518.log'
10/01/2012 05:55:21 : INFO  : Initialised job:
Sequence
>batch____
MRFSTQMMYQQNMRGITNSQAEWMKYGEQMSTGKRVVNPSDDPIAASQAVVLSQAQAQNS
QYTLARTFATQKVSLEESVLSQVTTAIQNAQEKIVYASNGTLSDDDRASLATDIQGLRDQ
LLNLANTTDGNGRYIFAGYKTETAPFSEEKGKYVGGAESIKQQVDASRSMVIGHTGDKIF
DSITSNAVAEPDGSASETNLFAMLDSAIAALKTPVADSEADKETAAAALDKTNRGLKNSL
NNVLTVRAELGTQLNELESLDSLGSDRALGQTQQMSDLVDVDWNATISSYIMQQTALQAS
YKAFTDMQGLSLFQLSK

10/01/2012 05:55:22 : INFO  : Checked sequence
10/01/2012 05:55:23 : INFO  : Finding homologues with PSI-BLAST
10/01/2012 05:55:24 : INFO  : PSI-BLAST 3 iterations
10/01/2012 05:57:04 : INFO  : PSI-BLAST 5 iterations
10/01/2012 05:59:03 : INFO  : Finished PSI-BLAST
10/01/2012 05:59:04 : INFO  : Running Buildali to generate a3m file
10/01/2012 06:07:16 : INFO  : Converting to HMM
10/01/2012 06:07:18 : INFO  : Calibrating HMM
10/01/2012 06:07:28 : INFO  : Searching HMM database
10/01/2012 06:14:24 : INFO  : Finished buildali
10/01/2012 06:14:25 : INFO  : Predicting secondary structure
10/01/2012 06:14:30 : INFO  : Predicted secondary structure (PSI-Pred)
10/01/2012 06:14:30 : INFO  : Predicting Disordered regions
10/01/2012 06:14:32 : INFO  : Predicted Disorder (Disopred)
10/01/2012 06:14:33 : INFO  : Running memsat_svm check
10/01/2012 06:17:31 : INFO  : Running memsat_svm full
10/01/2012 06:20:58 : INFO  : Predicted Transmembrane (memsat_svm) ID '4c3a3a93aa9dada0'
10/01/2012 06:20:59 : INFO  : Initialising fold library search
10/01/2012 06:21:00 : INFO  : Initialised search input
10/01/2012 06:21:01 : INFO  : Building Ensemble models
10/01/2012 06:21:03 : INFO  : Building hh.d1ucua_.model.1.pdb
10/01/2012 06:21:10 : INFO  : Building d1ucua_.1.pdb
10/01/2012 06:21:16 : INFO  : Building c3k8vB_.2.pdb
10/01/2012 06:21:21 : INFO  : Building c2d4xA_.3.pdb
10/01/2012 06:21:27 : INFO  : Building c3k8wA_.4.pdb
10/01/2012 06:21:33 : INFO  : Building c3pwxB_.5.pdb
10/01/2012 06:21:39 : INFO  : Building c2zbiB_.6.pdb
10/01/2012 06:21:45 : INFO  : Building d1io1a_.7.pdb
10/01/2012 06:21:51 : INFO  : Building c1oryB_.8.pdb
10/01/2012 06:21:58 : INFO  : Building c3a69A_.9.pdb
10/01/2012 06:22:04 : INFO  : Building c2kyyA_.10.pdb
10/01/2012 06:22:09 : INFO  : Building c2ieqC_.11.pdb
10/01/2012 06:22:15 : INFO  : Building c3pzdB_.12.pdb
10/01/2012 06:22:22 : INFO  : Building c2do9A_.13.pdb
10/01/2012 06:22:27 : INFO  : Building d1ffva2.14.pdb
10/01/2012 06:22:33 : INFO  : Building c3lmmA_.15.pdb
10/01/2012 06:22:39 : INFO  : Building c3a1yF_.16.pdb
10/01/2012 06:22:44 : INFO  : Building c2w6jG_.17.pdb
10/01/2012 06:22:52 : INFO  : Building c3fksY_.18.pdb
10/01/2012 06:22:59 : INFO  : Building d2jdig1.19.pdb
10/01/2012 06:23:06 : INFO  : Building d1rm6c2.20.pdb
10/01/2012 06:23:21 : INFO  : Finished HH model building
10/01/2012 06:23:22 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
10/01/2012 06:23:58 : INFO  : html domain output complete ID '4c3a3a93aa9dada0'
10/01/2012 06:31:33 : INFO  : Run end  : Tue Jan 10 06:31:33 GMT 2012
