08/01/2012 20:50:21 : INFO  : Run start: Sun Jan  8 20:50:20 GMT 2012
08/01/2012 20:50:24 : INFO  : Initialised job
08/01/2012 20:50:25 : INFO  : Renaming log file 'phyre2_20120108_205020.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/4bf3303cb26f4f03/phyre_20120108_205020.log'
08/01/2012 20:50:26 : INFO  : Initialised job:
Sequence
>batch____
MDWLLDVFATWLYGLKVIAITLAVIMFISGLDDFFIDVVYWVRRIKRKLSVYRRYPRMSY
RELYKPDEKPLAIMVPAWNETGVIGNMAELAATTLDYENYHIFVGTYPNDPDTQRDVDEV
CARFPNVHKVVCARPGPTSKADCLNNVLDAITQFERSANFAFAGFILHDAEDVISPMELR
LFNYLVERKDLIQIPVYPFEREWTHFTSMTYIDEFSELHGKDVPVREALAGQVPSAGVGT
CFSRRAVTALLADGDGIAFDVQSLTEDYDIGFRLKEKGMTEIFVRFPVVDEAKEREQRKF
LQHARTSNMICVREYFPDTFSTAVRQKSRWIIGIVFQGFKTHKWTSSLTLNYFLWRDRKG
AISNFVSFLAMLVMIQLLLLLAYESLWPDAWHFLSIFSGSAWLMTLLWLNFGLMVNRIVQ
RVIFVTGYYGLTQGLLSVLRLFWGNLINFMANWRALKQVLQHGDPRRVAWDKTTHDFPSV
TGDTRSLRPLGQILLENQVITEEQLDTALRNRVEGLRLGGSMLMQGLISAEQLAQALAEQ
NGVAWESIDAWQIPSSLIAEMPASVALHYAVLPLRLENDELIVGSEDGIDPVSLAALTRK
VGRKVRYVIVLRGQIVTGLRHWYARRRGHDPRAMLYNAVQHQWLTEQQAGEIWRQYVPHQ
FLFAEILTTLGHINRSAINVLLLRHERSSLPLGKFLVTEGVISQETLDRVLTIQRELQVS
MQSLLLKAGLNTEQVAQLESENEGE

08/01/2012 20:50:27 : INFO  : Checked sequence
08/01/2012 20:50:29 : INFO  : Finding homologues with PSI-BLAST
08/01/2012 20:50:30 : INFO  : PSI-BLAST 3 iterations
08/01/2012 20:53:42 : INFO  : PSI-BLAST 5 iterations
08/01/2012 20:58:55 : INFO  : Finished PSI-BLAST
08/01/2012 20:58:57 : INFO  : Running Buildali to generate a3m file
08/01/2012 21:13:23 : INFO  : Converting to HMM
08/01/2012 21:13:27 : INFO  : Calibrating HMM
08/01/2012 21:13:57 : INFO  : Searching HMM database
08/01/2012 21:30:53 : INFO  : Finished buildali
08/01/2012 21:30:54 : INFO  : Predicting secondary structure
08/01/2012 21:30:59 : INFO  : Predicted secondary structure (PSI-Pred)
08/01/2012 21:31:00 : INFO  : Predicting Disordered regions
08/01/2012 21:31:03 : INFO  : Predicted Disorder (Disopred)
08/01/2012 21:31:04 : INFO  : Running memsat_svm check
08/01/2012 21:33:12 : INFO  : Globular protein
08/01/2012 21:33:13 : INFO  : Predicted Transmembrane (memsat_svm) ID '4bf3303cb26f4f03'
08/01/2012 21:33:14 : INFO  : Initialising fold library search
08/01/2012 21:33:16 : INFO  : Initialised search input
08/01/2012 21:33:18 : INFO  : Building Ensemble models
08/01/2012 21:33:21 : INFO  : Building hh.d2d28c1.model.1.pdb
08/01/2012 21:33:31 : INFO  : Building hh.c3f1yC_.model.2.pdb
08/01/2012 21:33:40 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4bf3303cb26f4f03/hh.c3f1yC_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4bf3303cb26f4f03/c3f1yC_.2.pdb
08/01/2012 21:33:43 : INFO  : Building hh.c1xhbA_.model.3.pdb
08/01/2012 21:33:51 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4bf3303cb26f4f03/hh.c1xhbA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4bf3303cb26f4f03/c1xhbA_.3.pdb
08/01/2012 21:33:54 : INFO  : Building hh.d1xhba2.model.4.pdb
08/01/2012 21:34:03 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4bf3303cb26f4f03/hh.d1xhba2.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4bf3303cb26f4f03/d1xhba2.4.pdb
08/01/2012 21:34:06 : INFO  : Building hh.c2z86D_.model.5.pdb
08/01/2012 21:34:14 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4bf3303cb26f4f03/hh.c2z86D_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4bf3303cb26f4f03/c2z86D_.5.pdb
08/01/2012 21:34:18 : INFO  : Building hh.c2d7iA_.model.6.pdb
08/01/2012 21:34:26 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4bf3303cb26f4f03/hh.c2d7iA_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4bf3303cb26f4f03/c2d7iA_.6.pdb
08/01/2012 21:34:29 : INFO  : Building hh.c2ffuA_.model.7.pdb
08/01/2012 21:34:36 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4bf3303cb26f4f03/hh.c2ffuA_.model.7.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4bf3303cb26f4f03/c2ffuA_.7.pdb
08/01/2012 21:34:39 : INFO  : Building hh.d1p9ra_.model.8.pdb
08/01/2012 21:34:48 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4bf3303cb26f4f03/hh.d1p9ra_.model.8.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4bf3303cb26f4f03/d1p9ra_.18.pdb
08/01/2012 21:34:50 : INFO  : Building hh.c2ch4A_.model.9.pdb
08/01/2012 21:34:59 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4bf3303cb26f4f03/hh.c2ch4A_.model.9.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4bf3303cb26f4f03/c2ch4A_.23.pdb
08/01/2012 21:35:03 : INFO  : Building hh.d1ugpa_.model.10.pdb
08/01/2012 21:35:10 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4bf3303cb26f4f03/hh.d1ugpa_.model.10.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4bf3303cb26f4f03/d1ugpa_.25.pdb
08/01/2012 21:35:13 : INFO  : Building d2d28c1.1.pdb
08/01/2012 21:35:23 : INFO  : Building c3f1yC_.2.pdb
08/01/2012 21:35:33 : INFO  : Building c1xhbA_.3.pdb
08/01/2012 21:35:45 : INFO  : Building d1xhba2.4.pdb
08/01/2012 21:35:55 : INFO  : Building c2z86D_.5.pdb
08/01/2012 21:36:05 : INFO  : Building c2d7iA_.6.pdb
08/01/2012 21:36:15 : INFO  : Building c2ffuA_.7.pdb
08/01/2012 21:36:25 : INFO  : Building c3ckvA_.8.pdb
08/01/2012 21:36:34 : INFO  : Building c3bcvA_.9.pdb
08/01/2012 21:36:45 : INFO  : Building d1qg8a_.10.pdb
08/01/2012 21:36:55 : INFO  : Building c1omxB_.11.pdb
08/01/2012 21:37:07 : INFO  : Building d1omza_.12.pdb
08/01/2012 21:37:17 : INFO  : Building c2qgiA_.13.pdb
08/01/2012 21:37:27 : INFO  : Building d2bo4a1.14.pdb
08/01/2012 21:37:37 : INFO  : Building d1pzta_.15.pdb
08/01/2012 21:37:47 : INFO  : Building c3lw6A_.16.pdb
08/01/2012 21:37:57 : INFO  : Building d1fo8a_.17.pdb
08/01/2012 21:38:07 : INFO  : Building d1p9ra_.18.pdb
08/01/2012 21:38:17 : INFO  : Building c2wvmA_.19.pdb
08/01/2012 21:38:27 : INFO  : Building c2zu8A_.20.pdb
08/01/2012 21:40:32 : INFO  : Finished HH model building
08/01/2012 21:40:33 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
08/01/2012 21:41:43 : INFO  : html domain output complete ID '4bf3303cb26f4f03'
08/01/2012 22:30:35 : INFO  : Run end  : Sun Jan  8 22:30:35 GMT 2012
