19/01/2012 03:01:57 : INFO  : Run start: Thu Jan 19 03:01:56 GMT 2012
19/01/2012 03:02:03 : INFO  : Initialised job
19/01/2012 03:02:04 : INFO  : Renaming log file 'phyre2_20120119_030155.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/4bf25789b0d67ce6/phyre_20120119_030155.log'
19/01/2012 03:02:07 : INFO  : Initialised job:
Sequence
>batch____
MSQPIFNDKQFQEALSRQWQRYGLNSAAEMTPRQWWLAVSEALAEMLRAQPFAKPVANQR
HVNYISMEFLIGRLTGNNLLNLGWYQDVQDSLKAYDINLTDLLEEEIDPALGNGGLGRLA
ACFLDSMATVGQSATGYGLNYQYGLFRQSFVDGKQVEAPDDWHRSNYPWFRHNEALDVQV
GIGGKVTKDGRWEPEFTITGQAWDLPVVGYRNGVAQPLRLWQATHAHPFDLTKFNDGDFL
RAEQQGINAEKLTKVLYPNDNHTAGKKLRLMQQYFQCACSVADILRRHHLAGRKLHELAD
YEVIQLNDTHPTIAIPELLRVLIDEHQMSWDDAWAITSKTFAYTNHTLMPEALERWDVKL
VKGLLPRHMQIINEINTRFKTLVEKTWPGDEKVWAKLAVVHDKQVHMANLCVVGGFAVNG
VAALHSDLVVKDLFPEYHQLWPNKFHNVTNGITPRRWIKQCNPALAALLDKSLQKEWAND
LDQLINLEKFADDAKFRQQYREIKQANKVRLAEFVKVRTGIEINPQAIFDIQIKRLHEYK
RQHLNLLHILALYKEIRENPQADRVPRVFLFGAKAAPGYYLAKNIIFAINKVADVINNDP
LVGDKLKVVFLPDYCVSAAEKLIPAADISEQISTAGKEASGTGNMKLALNGALTVGTLDG
ANVEIAEKVGEENIFIFGHTVEQVKAILAKGYDPVKWRKKDKVLDAVLKELESGKYSDGD
KHAFDQMLHSIGKQGGDPYLVMADFAAYVEAQKQVDVLYRDQEAWTRAAILNTARCGMFS
SDRSIRDYQARIWQAKR

19/01/2012 03:02:08 : INFO  : Checked sequence
19/01/2012 03:02:12 : INFO  : Finding homologues with PSI-BLAST
19/01/2012 03:02:14 : INFO  : PSI-BLAST 3 iterations
19/01/2012 03:05:53 : INFO  : PSI-BLAST 5 iterations
19/01/2012 03:09:31 : INFO  : Finished PSI-BLAST
19/01/2012 03:09:33 : INFO  : Running Buildali to generate a3m file
19/01/2012 03:23:48 : INFO  : Converting to HMM
19/01/2012 03:23:55 : INFO  : Calibrating HMM
19/01/2012 03:24:28 : INFO  : Searching HMM database
19/01/2012 03:41:10 : INFO  : Finished buildali
19/01/2012 03:41:13 : INFO  : Predicting secondary structure
19/01/2012 03:41:24 : INFO  : Predicted secondary structure (PSI-Pred)
19/01/2012 03:41:26 : INFO  : Predicting Disordered regions
19/01/2012 03:41:31 : INFO  : Predicted Disorder (Disopred)
19/01/2012 03:41:34 : INFO  : Running memsat_svm check
19/01/2012 03:44:19 : INFO  : Globular protein
19/01/2012 03:44:21 : INFO  : Predicted Transmembrane (memsat_svm) ID '4bf25789b0d67ce6'
19/01/2012 03:44:24 : INFO  : Initialising fold library search
19/01/2012 03:44:32 : INFO  : Initialised search input
19/01/2012 03:44:35 : INFO  : Building Ensemble models
19/01/2012 03:44:40 : INFO  : Building hh.d1l5wa_.model.1.pdb
19/01/2012 03:45:13 : INFO  : Building d1l5wa_.1.pdb
19/01/2012 03:45:41 : INFO  : Building c3ddsB_.2.pdb
19/01/2012 03:46:06 : INFO  : Building d2atia1.3.pdb
19/01/2012 03:46:31 : INFO  : Building d2gj4a1.4.pdb
19/01/2012 03:46:58 : INFO  : Building c2c4mA_.5.pdb
19/01/2012 03:47:21 : INFO  : Building d1ygpa_.6.pdb
19/01/2012 03:47:45 : INFO  : Building c3o3cD_.7.pdb
19/01/2012 03:48:07 : INFO  : Building c3nb0A_.8.pdb
19/01/2012 03:48:30 : INFO  : Building d1rzua_.9.pdb
19/01/2012 03:48:52 : INFO  : Building c2x6rA_.10.pdb
19/01/2012 03:49:14 : INFO  : Building c1uquB_.11.pdb
19/01/2012 03:49:37 : INFO  : Building d1uqta_.12.pdb
19/01/2012 03:50:02 : INFO  : Building c2xmpB_.13.pdb
19/01/2012 03:50:26 : INFO  : Building c2qzsA_.14.pdb
19/01/2012 03:50:49 : INFO  : Building d2bisa1.15.pdb
19/01/2012 03:51:11 : INFO  : Building c2r60A_.16.pdb
19/01/2012 03:51:33 : INFO  : Building c3s29C_.17.pdb
19/01/2012 03:51:55 : INFO  : Building c3c4vB_.18.pdb
19/01/2012 03:52:16 : INFO  : Building c3oy2A_.19.pdb
19/01/2012 03:52:39 : INFO  : Building d2f9fa1.20.pdb
19/01/2012 03:53:35 : INFO  : Finished HH model building
19/01/2012 03:53:37 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
19/01/2012 03:54:39 : INFO  : html domain output complete ID '4bf25789b0d67ce6'
19/01/2012 07:41:40 : INFO  : Run end  : Thu Jan 19 07:41:38 GMT 2012
