Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	T	Q	Q	I	T	L	I	K	D	K	I	L	S	D	N	Y	F	T	L	H	N	I	T	Y	D	L	T	R	K	D	G	E	V	I	R	H	K	R	E	V	Y	D	R	G	N	G	A	T	I	L	L	Y	N	T	K	K	K	T	V
Secondary structure
SS confidence
Disorder		?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	L	I	R	Q	F	R	V	A	T	W	V	N	G	N	E	S	G	Q	L	I	E	S	C	A	G	L	L	D	N	D	E	P	E	V	C	I	R	K	E	A	I	E	E	T	G	Y	E	V	G	E	V	R	K	L	F	E	L	Y	M
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		S	P	G	G	V	T	E	L	I	H	F	F	I	A	E	Y	S	D	N	Q	R	A	N	A	G	G	G	V	E	D	E	D	I	E	V	L	E	L	P	F	S	Q	A	L	E	M	I	K	T	G	E	I	R	D	G	K	T	V	L	L
Secondary structure
SS confidence
Disorder																				?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.
Sequence		L	N	Y	L	Q	T	S	H	L	M	D
Secondary structure
SS confidence
Disorder									?	?	?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 1viu chain A Region: 3 - 191 Aligned: 180 Modelled: 189 Confidence: 100.0% Identity: 97% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 1g0s chain A Region: 2 - 188 Aligned: 179 Modelled: 187 Confidence: 100.0% Identity: 29% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 1vhz chain A Region: 3 - 187 Aligned: 172 Modelled: 185 Confidence: 100.0% Identity: 19% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3bm4 chain B Region: 4 - 189 Aligned: 176 Modelled: 186 Confidence: 100.0% Identity: 26% PDB header:hydrolase Chain: B: PDB Molecule:adp-sugar pyrophosphatase; PDBTitle: crystal structure of human adp-ribose pyrophosphatase nudt52 in complex with magnesium and ampcpr Phyre2 PDB 1mqe chain A Region: 5 - 188 Aligned: 157 Modelled: 173 Confidence: 100.0% Identity: 22% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 2yvo chain A Region: 5 - 187 Aligned: 171 Modelled: 183 Confidence: 100.0% Identity: 27% PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of ndx2 in complex with mg2+ and amp from thermus2 thermophilus hb8 Phyre2 PDB 3q91 chain D Region: 44 - 189 Aligned: 136 Modelled: 136 Confidence: 100.0% Identity: 26% PDB header:hydrolase Chain: D: PDB Molecule:uridine diphosphate glucose pyrophosphatase; PDBTitle: crystal structure of human uridine diphosphate glucose pyrophosphatase2 (nudt14) Phyre2 PDB 1v8y chain A Region: 10 - 189 Aligned: 147 Modelled: 154 Confidence: 100.0% Identity: 29% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 2w4e chain A Region: 43 - 190 Aligned: 130 Modelled: 137 Confidence: 100.0% Identity: 29% PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: structure of an n-terminally truncated nudix hydrolase2 dr2204 from deinococcus radiodurans Phyre2 PDB 1sjy chain A Region: 44 - 188 Aligned: 136 Modelled: 145 Confidence: 99.8% Identity: 20% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 2o5f chain A domain 1 Region: 44 - 184 Aligned: 126 Modelled: 132 Confidence: 99.7% Identity: 21% Fold: Nudix Superfamily: Nudix Family: IPP isomerase-like Phyre2 PDB 1vk6 chain A domain 2 Region: 44 - 188 Aligned: 130 Modelled: 145 Confidence: 99.7% Identity: 15% Fold: Nudix Superfamily: Nudix Family: NADH pyrophosphatase Phyre2 PDB 2jvb chain A Region: 46 - 185 Aligned: 128 Modelled: 140 Confidence: 99.7% Identity: 15% PDB header:hydrolase Chain: A: PDB Molecule:mrna-decapping enzyme subunit 2; PDBTitle: solution structure of catalytic domain of ydcp2 Phyre2 PDB 2gb5 chain B Region: 39 - 188 Aligned: 135 Modelled: 150 Confidence: 99.7% Identity: 19% PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution Phyre2 PDB 1nqz chain A Region: 44 - 165 Aligned: 109 Modelled: 113 Confidence: 99.7% Identity: 23% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 3dku chain B Region: 45 - 165 Aligned: 110 Modelled: 121 Confidence: 99.7% Identity: 17% PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 Phyre2 PDB 2b0v chain A domain 1 Region: 45 - 189 Aligned: 134 Modelled: 145 Confidence: 99.7% Identity: 13% Fold: Nudix Superfamily: Nudix Family: MutT-like Phyre2 PDB 2fkb chain A domain 1 Region: 44 - 187 Aligned: 131 Modelled: 138 Confidence: 99.7% Identity: 18% Fold: Nudix Superfamily: Nudix Family: IPP isomerase-like Phyre2 PDB 2o1c chain B Region: 40 - 181 Aligned: 128 Modelled: 142 Confidence: 99.7% Identity: 16% PDB header:hydrolase Chain: B: PDB Molecule:datp pyrophosphohydrolase; PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase Phyre2 PDB 2a6t chain A domain 2 Region: 44 - 191 Aligned: 131 Modelled: 139 Confidence: 99.7% Identity: 14% Fold: Nudix Superfamily: Nudix Family: mRNA decapping enzyme-like Phyre2 1 d1viua_ 2 d1g0sa_ 3 d1vhza_ 4 c3bm4B_ 5 d1mqea_ 6 c2yvoA_ 7 c3q91D_ 8 d1v8ya_ 9 c2w4eA_ 10 d1sjya_ 11 d2o5fa1 12 d1vk6a2 13 c2jvbA_ 14 c2gb5B_ 15 d1nqza_ 16 c3dkuB_ 17 d2b0va1 18 d2fkba1 19 c2o1cB_ 20 d2a6ta2 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 d1viua_ 100.0 97 Fold:Nudix Superfamily:Nudix Family:MutT-like 2 d1g0sa_ 100.0 29 Fold:Nudix Superfamily:Nudix Family:MutT-like 3 d1vhza_ 100.0 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 4 c3bm4B_ 100.0 26 PDB header:hydrolase Chain: B: PDB Molecule:adp-sugar pyrophosphatase; PDBTitle: crystal structure of human adp-ribose pyrophosphatase nudt52 in complex with magnesium and ampcpr 5 d1mqea_ 100.0 22 Fold:Nudix Superfamily:Nudix Family:MutT-like 6 c2yvoA_ 100.0 27 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of ndx2 in complex with mg2+ and amp from thermus2 thermophilus hb8 7 c3q91D_ 100.0 26 PDB header:hydrolase Chain: D: PDB Molecule:uridine diphosphate glucose pyrophosphatase; PDBTitle: crystal structure of human uridine diphosphate glucose pyrophosphatase2 (nudt14) 8 d1v8ya_ 100.0 29 Fold:Nudix Superfamily:Nudix Family:MutT-like 9 c2w4eA_ 100.0 29 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: structure of an n-terminally truncated nudix hydrolase2 dr2204 from deinococcus radiodurans 10 d1sjya_ 99.8 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 11 d2o5fa1 99.7 21 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 12 d1vk6a2 99.7 15 Fold:Nudix Superfamily:Nudix Family:NADH pyrophosphatase 13 c2jvbA_ 99.7 15 PDB header:hydrolase Chain: A: PDB Molecule:mrna-decapping enzyme subunit 2; PDBTitle: solution structure of catalytic domain of ydcp2 14 c2gb5B_ 99.7 19 PDB header:hydrolase Chain: B: PDB Molecule:nadh pyrophosphatase; PDBTitle: crystal structure of nadh pyrophosphatase (ec 3.6.1.22) (1790429) from2 escherichia coli k12 at 2.30 a resolution 15 d1nqza_ 99.7 23 Fold:Nudix Superfamily:Nudix Family:MutT-like 16 c3dkuB_ 99.7 17 PDB header:hydrolase Chain: B: PDB Molecule:putative phosphohydrolase; PDBTitle: crystal structure of nudix hydrolase orf153, ymfb, from2 escherichia coli k-1 17 d2b0va1 99.7 13 Fold:Nudix Superfamily:Nudix Family:MutT-like 18 d2fkba1 99.7 18 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 19 c2o1cB_ 99.7 16 PDB header:hydrolase Chain: B: PDB Molecule:datp pyrophosphohydrolase; PDBTitle: structure of the e. coli dihydroneopterin triphosphate2 pyrophosphohydrolase 20 d2a6ta2 99.7 14 Fold:Nudix Superfamily:Nudix Family:mRNA decapping enzyme-like 21 c2fvvA_ not modelled 99.7 14 PDB header:hydrolase Chain: A: PDB Molecule:diphosphoinositol polyphosphate phosphohydrolase PDBTitle: human diphosphoinositol polyphosphate phosphohydrolase 1 22 d2fvva1 not modelled 99.7 14 Fold:Nudix Superfamily:Nudix Family:MutT-like 23 c3h95A_ not modelled 99.7 14 PDB header:gene regulation Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 6; PDBTitle: crystal structure of the nudix domain of nudt6 24 c2kdvA_ not modelled 99.7 19 PDB header:hydrolase Chain: A: PDB Molecule:rna pyrophosphohydrolase; PDBTitle: solution structure of rna pyrophosphohydrolase rpph from2 escherichia coli 25 c3gg6A_ not modelled 99.6 15 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 18; PDBTitle: crystal structure of the nudix domain of human nudt18 26 d2azwa1 not modelled 99.6 18 Fold:Nudix Superfamily:Nudix Family:MutT-like 27 c3cngC_ not modelled 99.6 17 PDB header:hydrolase Chain: C: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from nitrosomonas europaea 28 d1ktga_ not modelled 99.6 11 Fold:Nudix Superfamily:Nudix Family:MutT-like 29 c3fjyB_ not modelled 99.6 18 PDB header:hydrolase Chain: B: PDB Molecule:probable mutt1 protein; PDBTitle: crystal structure of a probable mutt1 protein from bifidobacterium2 adolescentis 30 c2r5wA_ not modelled 99.6 13 PDB header:hydrolase, transferase Chain: A: PDB Molecule:nicotinamide-nucleotide adenylyltransferase; PDBTitle: crystal structure of a bifunctional nmn2 adenylyltransferase/adp ribose pyrophosphatase from3 francisella tularensis 31 c3id9B_ not modelled 99.6 19 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from2 bacillus thuringiensis 32 d1irya_ not modelled 99.6 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 33 d1jkna_ not modelled 99.6 17 Fold:Nudix Superfamily:Nudix Family:MutT-like 34 c3i9xA_ not modelled 99.6 17 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mutt/nudix family protein from listeria innocua 35 d1vcda1 not modelled 99.6 20 Fold:Nudix Superfamily:Nudix Family:MutT-like 36 c3hhjA_ not modelled 99.6 17 PDB header:hydrolase Chain: A: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mutator mutt from bartonella henselae 37 c2pq1B_ not modelled 99.6 23 PDB header:hydrolase Chain: B: PDB Molecule:ap4a hydrolase; PDBTitle: crystal structure of ap4a hydrolase complexed with amp and2 atp (aq_158) from aquifex aeolicus vf5 38 c3grnB_ not modelled 99.6 18 PDB header:hydrolase Chain: B: PDB Molecule:mutt related protein; PDBTitle: crystal structure of mutt protein from methanosarcina mazei go1 39 c3o8sA_ not modelled 99.6 13 PDB header:hydrolase Chain: A: PDB Molecule:adp-ribose pyrophosphatase; PDBTitle: crystal structure of an adp-ribose pyrophosphatase (ssu98_1448) from2 streptococcus suis 89-1591 at 2.27 a resolution 40 d1ryaa_ not modelled 99.6 11 Fold:Nudix Superfamily:Nudix Family:GDP-mannose mannosyl hydrolase NudD 41 c3gz8C_ not modelled 99.6 16 PDB header:dna binding protein Chain: C: PDB Molecule:mutt/nudix family protein; PDBTitle: cocrystal structure of nudix domain of shewanella oneidensis2 nrtr complexed with adp ribose 42 c3gwyA_ not modelled 99.6 16 PDB header:hydrolase Chain: A: PDB Molecule:putative ctp pyrophosphohydrolase; PDBTitle: crystal structure of putative ctp pyrophosphohydrolase from2 bacteroides fragilis 43 c3sonB_ not modelled 99.6 11 PDB header:hydrolase Chain: B: PDB Molecule:hypothetical nudix hydrolase; PDBTitle: crystal structure of a hypothetical nudix hydrolase (lmof2365_2679)2 from listeria monocytogenes (atcc 19115) at 1.70 a resolution 44 c2qkmF_ not modelled 99.6 14 PDB header:hydrolase Chain: F: PDB Molecule:spac19a8.12 protein; PDBTitle: the crystal structure of fission yeast mrna decapping enzyme dcp1-dcp22 complex 45 c3exqA_ not modelled 99.6 14 PDB header:hydrolase Chain: A: PDB Molecule:nudix family hydrolase; PDBTitle: crystal structure of a nudix family hydrolase from2 lactobacillus brevis 46 c2qjoB_ not modelled 99.6 11 PDB header:transferase, hydrolase Chain: B: PDB Molecule:bifunctional nmn adenylyltransferase/nudix hydrolase; PDBTitle: crystal structure of a bifunctional nmn adenylyltransferase/adp ribose2 pyrophosphatase (nadm) complexed with adprp and nad from3 synechocystis sp. 47 d2b06a1 not modelled 99.6 19 Fold:Nudix Superfamily:Nudix Family:MutT-like 48 c3e57A_ not modelled 99.5 13 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein tm1382; PDBTitle: crystal structure of tm1382, a putative nudix hydrolase 49 d2fb1a2 not modelled 99.5 9 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 50 c3fcmA_ not modelled 99.5 19 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a nudix hydrolase from clostridium2 perfringens 51 d1xsba_ not modelled 99.5 14 Fold:Nudix Superfamily:Nudix Family:MutT-like 52 d1ppva_ not modelled 99.5 13 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 53 d1puna_ not modelled 99.5 15 Fold:Nudix Superfamily:Nudix Family:MutT-like 54 c2yyhC_ not modelled 99.5 19 PDB header:hydrolase Chain: C: PDB Molecule:8-oxo-dgtpase domain; PDBTitle: crystal structure of nudix family protein from aquifex aeolicus 55 c3q4iA_ not modelled 99.5 17 PDB header:hydrolase Chain: A: PDB Molecule:phosphohydrolase (mutt/nudix family protein); PDBTitle: crystal structure of cdp-chase in complex with gd3+ 56 c3ef5A_ not modelled 99.5 18 PDB header:hydrolase Chain: A: PDB Molecule:probable pyrophosphohydrolase; PDBTitle: structure of the rna pyrophosphohydrolase bdrpph in complex with dgtp 57 c3r03B_ not modelled 99.5 23 PDB header:hydrolase Chain: B: PDB Molecule:nudix hydrolase; PDBTitle: the crystal structure of nudix hydrolase from rhodospirillum rubrum 58 d1hzta_ not modelled 99.5 15 Fold:Nudix Superfamily:Nudix Family:IPP isomerase-like 59 c3fk9B_ not modelled 99.5 15 PDB header:hydrolase Chain: B: PDB Molecule:mutator mutt protein; PDBTitle: crystal structure of mmutator mutt protein from bacillus2 halodurans 60 c3n77B_ not modelled 99.5 17 PDB header:hydrolase Chain: B: PDB Molecule:nucleoside triphosphatase nudi; PDBTitle: crystal structure of idp01880, putative ntp pyrophosphohydrolase of2 salmonella typhimurium lt2 61 c3dupB_ not modelled 99.5 14 PDB header:hydrolase Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family hydrolase from rhodospirillum2 rubrum atcc 11170 62 c2pqvA_ not modelled 99.4 14 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from streptococcus2 pneumoniae 63 c3f6aA_ not modelled 99.4 20 PDB header:hydrolase Chain: A: PDB Molecule:hydrolase, nudix family; PDBTitle: crystal structure of a hydrolase, nudix family from2 clostridium perfringens 64 c3gz6A_ not modelled 99.4 16 PDB header:dna binding protein/dna Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of shewanella oneidensis nrtr complexed2 with a 27mer dna 65 d1k2ea_ not modelled 99.4 16 Fold:Nudix Superfamily:Nudix Family:MutT-like 66 c2fb1A_ not modelled 99.3 12 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:conserved hypothetical protein; PDBTitle: crystal structure of protein bt0354 from bacteroides thetaiotaomicron 67 d2fmla2 not modelled 99.3 17 Fold:Nudix Superfamily:Nudix Family:BT0354 N-terminal domain-like 68 c3edsA_ not modelled 99.3 23 PDB header:hydrolase Chain: A: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of a mut/nudix family protein from bacillus2 thuringiensis 69 c3f13A_ not modelled 99.3 17 PDB header:hydrolase Chain: A: PDB Molecule:putative nudix hydrolase family member; PDBTitle: crystal structure of putative nudix hydrolase family member2 from chromobacterium violaceum 70 c2i6kA_ not modelled 99.2 14 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 1; PDBTitle: crystal structure of human type i ipp isomerase complexed2 with a substrate analog 71 c3rh7A_ not modelled 99.2 11 PDB header:oxidoreductase Chain: A: PDB Molecule:hypothetical oxidoreductase; PDBTitle: crystal structure of a hypothetical oxidoreductase (sma0793) from2 sinorhizobium meliloti 1021 at 3.00 a resolution 72 c3qsjA_ not modelled 99.1 25 PDB header:hydrolase Chain: A: PDB Molecule:nudix hydrolase; PDBTitle: crystal structure of nudix hydrolase from alicyclobacillus2 acidocaldarius 73 c2fmlB_ not modelled 99.1 17 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:mutt/nudix family protein; PDBTitle: crystal structure of mutt/nudix family protein from enterococcus2 faecalis 74 c2pnyA_ not modelled 99.1 14 PDB header:isomerase Chain: A: PDB Molecule:isopentenyl-diphosphate delta-isomerase 2; PDBTitle: structure of human isopentenyl-diphosphate delta-isomerase 2 75 d1x51a1 not modelled 99.1 11 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 76 d1u20a1 not modelled 99.1 22 Fold:Nudix Superfamily:Nudix Family:MutT-like 77 d1q33a_ not modelled 99.0 12 Fold:Nudix Superfamily:Nudix Family:MutT-like 78 c1rrqA_ not modelled 98.8 10 PDB header:hydrolase/dna Chain: A: PDB Molecule:muty; PDBTitle: muty adenine glycosylase in complex with dna containing an2 a:oxog pair 79 c2j8qB_ not modelled 98.8 13 PDB header:nuclear protein Chain: B: PDB Molecule:cleavage and polyadenylation specificity factor 5; PDBTitle: crystal structure of human cleavage and polyadenylation2 specificity factor 5 (cpsf5) in complex with a sulphate3 ion. 80 d1rrqa2 not modelled 98.7 10 Fold:Nudix Superfamily:Nudix Family:MutY C-terminal domain-like 81 c3couA_ not modelled 98.1 27 PDB header:hydrolase Chain: A: PDB Molecule:nucleoside diphosphate-linked moiety x motif 16; PDBTitle: crystal structure of human nudix motif 16 (nudt16) 82 c3kvhA_ not modelled 97.5 19 PDB header:rna binding protein Chain: A: PDB Molecule:protein syndesmos; PDBTitle: crystal structure of human protein syndesmos (nudt16-like protein) 83 c3p5tE_ not modelled 78.0 12 PDB header:rna binding protein Chain: E: PDB Molecule:cleavage and polyadenylation specificity factor subunit 5; PDBTitle: cfim25-cfim68 complex 84 c3pjyB_ not modelled 22.0 22 PDB header:transcription regulator Chain: B: PDB Molecule:hypothetical signal peptide protein; PDBTitle: crystal structure of a putative transcription regulator (r01717) from2 sinorhizobium meliloti 1021 at 1.55 a resolution 85 c3m7aA_ not modelled 18.3 19 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of saro_0823 (yp_496102.1) a protein of2 unknown function from novosphingobium aromaticivorans dsm3 12444 at 1.22 a resolution 86 c3pppA_ not modelled 9.2 15 PDB header:transport protein Chain: A: PDB Molecule:glycine betaine/carnitine/choline-binding protein; PDBTitle: structures of the substrate-binding protein provide insights into the2 multiple compatible solutes binding specificities of bacillus3 subtilis abc transporter opuc 87 d2dw4a1 not modelled 8.2 23 Fold:DNA/RNA-binding 3-helical bundle Superfamily:Homeodomain-like Family:SWIRM domain 88 d2p12a1 not modelled 7.9 17 Fold:FomD barrel-like Superfamily:FomD-like Family:FomD-like 89 c2hkoA_ not modelled 7.6 22 PDB header:oxidoreductase Chain: A: PDB Molecule:lysine-specific histone demethylase 1; PDBTitle: crystal structure of lsd1 90 d2fug21 not modelled 7.1 18 Fold:Thioredoxin fold Superfamily:Thioredoxin-like Family:NQO2-like 91 c2xagA_ not modelled 7.1 22 PDB header:transcription Chain: A: PDB Molecule:lysine-specific histone demethylase 1; PDBTitle: crystal structure of lsd1-corest in complex with para-bromo-2 (-)-trans-2-phenylcyclopropyl-1-amine 92 c2v1dA_ not modelled 7.1 22 PDB header:oxidoreductase/repressor Chain: A: PDB Molecule:lysine-specific histone demethylase 1; PDBTitle: structural basis of lsd1-corest selectivity in histone h32 recognition 93 c2hf6A_ not modelled 6.8 10 PDB header:protein transport Chain: A: PDB Molecule:coatomer subunit zeta-1; PDBTitle: solution structure of human zeta-cop 94 c3d0wD_ not modelled 6.6 14 PDB header:structural genomics, unknown function Chain: D: PDB Molecule:yflh protein; PDBTitle: crystal structure of yflh protein from bacillus subtilis.2 northeast structural genomics consortium target sr326 95 d1gw5s_ not modelled 6.0 21 Fold:Profilin-like Superfamily:SNARE-like Family:Clathrin coat assembly domain 96 d1bm8a_ not modelled 5.8 14 Fold:DNA-binding domain of Mlu1-box binding protein MBP1 Superfamily:DNA-binding domain of Mlu1-box binding protein MBP1 Family:DNA-binding domain of Mlu1-box binding protein MBP1 97 d1wgga_ not modelled 5.6 21 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related 98 d1l3ga_ not modelled 5.5 16 Fold:DNA-binding domain of Mlu1-box binding protein MBP1 Superfamily:DNA-binding domain of Mlu1-box binding protein MBP1 Family:DNA-binding domain of Mlu1-box binding protein MBP1 99 d1v86a_ not modelled 5.4 10 Fold:beta-Grasp (ubiquitin-like) Superfamily:Ubiquitin-like Family:Ubiquitin-related

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0