BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (329 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P02924 L-arabinose-binding periplasmic protein n=117 Ta... 672 0.0 UniRef50_C4XAG8 L-arabinose-binding periplasmic protein n=11 Tax... 622 e-177 UniRef50_Q2T4S7 L-arabinose ABC transporter, periplasmic L-arabi... 280 5e-74 UniRef50_Q3JM30 L-arabinose ABC transporter, periplasmic L-arabi... 275 2e-72 UniRef50_Q987E6 L-arabinose-binding protein n=1 Tax=Mesorhizobiu... 133 1e-29 UniRef50_A6LT79 Periplasmic binding protein/LacI transcriptional... 100 1e-19 UniRef50_C7Q3D4 Periplasmic binding protein/LacI transcriptional... 94 5e-18 UniRef50_B0P682 Putative uncharacterized protein n=1 Tax=Anaerot... 82 3e-14 UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional... 77 8e-13 UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminoc... 56 2e-06 UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional... 54 8e-06 UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional... 53 2e-05 UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional... 49 2e-04 UniRef50_B8D164 ABC-type sugar transport system, periplasmic com... 49 3e-04 UniRef50_B2JTD1 Periplasmic binding protein/LacI transcriptional... 48 4e-04 UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-bindi... 47 8e-04 UniRef50_A1WNV9 Periplasmic binding protein/LacI transcriptional... 47 8e-04 UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantel... 47 0.001 UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gamm... 46 0.002 UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkh... 45 0.004 UniRef50_D0LRU4 D-xylose transporter subunit XylF n=1 Tax=Halian... 45 0.005 UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional... 44 0.010 UniRef50_A5FZZ2 Monosaccharide-transporting ATPase n=1 Tax=Acidi... 43 0.013 UniRef50_C4G7J1 Putative uncharacterized protein n=1 Tax=Abiotro... 43 0.015 UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clo... 43 0.019 UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotr... 42 0.025 UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional... 42 0.026 UniRef50_A0QZW4 D-ribose-binding periplasmic protein RbsB n=1 Ta... 42 0.028 UniRef50_A7II12 Periplasmic binding protein/LacI transcriptional... 42 0.042 UniRef50_Q28MQ1 Periplasmic binding protein/LacI transcriptional... 41 0.071 UniRef50_B5ZRZ8 Periplasmic binding protein/LacI transcriptional... 40 0.098 UniRef50_A6W303 Periplasmic binding protein/LacI transcriptional... 40 0.100 >UniRef50_P02924 L-arabinose-binding periplasmic protein n=117 Tax=Gammaproteobacteria RepID=ARAF_ECOLI Length = 329 Score = 672 bits (1735), Expect = 0.0, Method: Compositional matrix adjust. Identities = 329/329 (100%), Positives = 329/329 (100%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK Sbjct: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 Query: 61 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG Sbjct: 61 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120 Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD Sbjct: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180 Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE Sbjct: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240 Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP Sbjct: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300 Query: 301 PKFTEVTDVVLITRDNFKEELEKKGLGGK 329 PKFTEVTDVVLITRDNFKEELEKKGLGGK Sbjct: 301 PKFTEVTDVVLITRDNFKEELEKKGLGGK 329 >UniRef50_C4XAG8 L-arabinose-binding periplasmic protein n=11 Tax=Enterobacteriaceae RepID=C4XAG8_KLEPN Length = 326 Score = 622 bits (1603), Expect = e-177, Method: Compositional matrix adjust. Identities = 299/326 (91%), Positives = 316/326 (96%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGF+VIK Sbjct: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFDVIK 60 Query: 61 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVI VDDQFVNAKG Sbjct: 61 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVITVDDQFVNAKG 120 Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180 KPM++VPLVMMAA++IG RQGQELYKEMQKRGWDVK++AVMAITA+ELDTARRRTTGS+D Sbjct: 121 KPMESVPLVMMAASEIGARQGQELYKEMQKRGWDVKDTAVMAITADELDTARRRTTGSID 180 Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240 ALKAAGFP+ QIY+VPTKSNDIPGAFDA NSMLVQHP+VKHWLIVGMND+TVLGGVRATE Sbjct: 181 ALKAAGFPDAQIYRVPTKSNDIPGAFDAGNSMLVQHPQVKHWLIVGMNDNTVLGGVRATE 240 Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300 GQGFKA D+IGIGINGVDAV+ELSKAQ TGFYGSLLPSPD+HGYK+SEMLYNWV K VEP Sbjct: 241 GQGFKAPDVIGIGINGVDAVNELSKAQPTGFYGSLLPSPDIHGYKTSEMLYNWVTKGVEP 300 Query: 301 PKFTEVTDVVLITRDNFKEELEKKGL 326 PKFT VTDVVLITRDNFKEEL KKGL Sbjct: 301 PKFTAVTDVVLITRDNFKEELAKKGL 326 >UniRef50_Q2T4S7 L-arabinose ABC transporter, periplasmic L-arabinose-binding protein n=33 Tax=Proteobacteria RepID=Q2T4S7_BURTA Length = 340 Score = 280 bits (716), Expect = 5e-74, Method: Compositional matrix adjust. Identities = 146/315 (46%), Positives = 203/315 (64%), Gaps = 4/315 (1%) Query: 7 ALAAIGLAAVMSQSAMAEN--LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP 64 A AA+ +A + +A + LK+GFLVK PE+ WF E K A G+ GF V+ I P Sbjct: 19 AFAALVIAPLAMPAATRADTPLKIGFLVKMPEQAWFINEQKAATALGQKEGFSVVNIGTP 78 Query: 65 DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124 DGEK L AID+L + GA+GFVIC PD +LG AI A+A+ YDMK + VDDQ V++ GKP+ Sbjct: 79 DGEKVLAAIDNLGSQGAQGFVICAPDVRLGPAIAARAKRYDMKFVTVDDQLVDSSGKPLA 138 Query: 125 TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA 184 VP + M+ATKIG + GQ + EM+KRGW +E + +T EL TA+ RT G+ AL A Sbjct: 139 NVPHLGMSATKIGNQVGQAIADEMKKRGWKPEEVGALRVTNYELPTAKLRTDGATQALLA 198 Query: 185 AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF 244 +GF ++ I+ P K+ D G F AA +L +HP VK W+I +N+ TVLG VRATE Sbjct: 199 SGFKKENIFDAPQKTTDDEGGFSAAAPVLARHPNVKKWVIFALNEETVLGAVRATEQLHI 258 Query: 245 KAADIIGIGINGV-DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKF 303 AAD+IG+GING +A +E K + TGF+G++ S HG +S++ L +W+ PP Sbjct: 259 PAADVIGVGINGAGEAFAEFQKKEPTGFFGTIAVSSTNHGKQSAQNLVDWIRSGKAPPAD 318 Query: 304 TEVTDVVLITRDNFK 318 T+ T L+TR+N++ Sbjct: 319 TQ-TSGKLMTRENWQ 332 >UniRef50_Q3JM30 L-arabinose ABC transporter, periplasmic L-arabinose-binding protein n=105 Tax=Bacteria RepID=Q3JM30_BURP1 Length = 456 Score = 275 bits (703), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 141/302 (46%), Positives = 200/302 (66%), Gaps = 2/302 (0%) Query: 26 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFV 85 +K+GF+VKQP++PWFQ EW+FA++A KD F ++KIA P GEK A+DSLAA A+G + Sbjct: 156 VKIGFVVKQPDDPWFQDEWRFAEQAAKDKHFTLVKIAAPSGEKVSTALDSLAAQKAQGVI 215 Query: 86 ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145 IC PD KLG I AKAR Y MK+++VDDQ V+ +G P+ VP + ++A +IG + G + Sbjct: 216 ICAPDVKLGPGIAAKARRYGMKLMSVDDQLVDGRGAPLADVPHMGISAYRIGRQVGDAIA 275 Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205 E ++RGW+ E V+ + ++L TAR RTTG++DALKAAGF + P + D GA Sbjct: 276 AEAKRRGWNPAEVGVLRLAYDQLPTARERTTGAVDALKAAGFAAANVVDAPEMTADTEGA 335 Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVD-AVSELS 264 F+AAN +H KHW+ G ND T +G VRA EG+G A D+I +GING A++E + Sbjct: 336 FNAANIAFTKHRNFKHWVAFGSNDDTTVGAVRAGEGRGIGADDMIAVGINGSQVALNEFA 395 Query: 265 KAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKK 324 K + TGF+GS+L +P +HGY +S +Y+W+ ++ PP +T LITR N K + Sbjct: 396 KPKPTGFFGSILLNPRLHGYDTSVNMYDWITQNRAPPPVV-LTSGTLITRANEKTARAQL 454 Query: 325 GL 326 GL Sbjct: 455 GL 456 >UniRef50_Q987E6 L-arabinose-binding protein n=1 Tax=Mesorhizobium loti RepID=Q987E6_RHILO Length = 327 Score = 133 bits (334), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 109/329 (33%), Positives = 156/329 (47%), Gaps = 10/329 (3%) Query: 1 MHKFTKALA--AIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV 58 M TKALA AI A +M+ +A A+++K+G++ K E PWF E A KA + G Sbjct: 1 MKTTTKALATVAILAAGLMAGAASADDIKIGYINKMGEHPWFVAEVGGAKKAAEAAGATF 60 Query: 59 IKIAVP-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117 + V D T+ D++ G KG I PD LG I KA+ + ++AVDD Sbjct: 61 VSQDVQFDSNLTITTFDTMVGDGVKGIAIVVPDKALGPVIAEKAKAAKIPLVAVDDDIYY 120 Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177 G VP V M A IG R G+EL K + GW KE + +I + DT +R G Sbjct: 121 QDGT---QVPYVGMNAYNIGARVGEELAKLYKADGWAGKEVRIASIEDRKADTCMQRNKG 177 Query: 178 SMDA-LKAA-GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG 235 + +A LKA F I +VP N + A D + L +P V +W+ ND VLG Sbjct: 178 AEEAFLKAVPDFKPANILRVP-YDNTMVNAIDVMTTTLTANPGVTNWIFYSCNDDGVLGA 236 Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295 RA E G+ A +GIGI+G A + + F G++ + HG + ++L + Sbjct: 237 ARALENAGYAADQGMGIGIDGSRACEAFGSGKPSAFRGTMWLNSANHGALAVKILLASIK 296 Query: 296 KDVEPPKFTEVTDVVLITRDNFKEELEKK 324 + P TD IT NF + + K Sbjct: 297 DGTKLP-VQSFTDPEYITAGNFASDYKAK 324 >UniRef50_A6LT79 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LT79_CLOB8 Length = 331 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/306 (24%), Positives = 144/306 (47%), Gaps = 12/306 (3%) Query: 19 QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGF-EVIKI-AVPDGEKTLNAIDSL 76 QS+ +L + + K +E WFQ E + A +G +VI I A + + L+A+D+L Sbjct: 27 QSSKKSDLVIAVIYKTLDEAWFQEESEAAKNKALAMGAKDVITIDAKMNPDVYLSALDNL 86 Query: 77 AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136 G +IC PD KL + + + ++ VIA DD + +G + P V + + +I Sbjct: 87 ITQKVDGILICVPDQKLSKITIDRCKKSNIAVIACDDPLTDDEGNYI--APFVGIDSNQI 144 Query: 137 GERQGQEL--YKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALK--AAGFPEKQI 192 G + Y E + D S ++ ++ + + + RT G ++ K FP + I Sbjct: 145 GRDMTSLMVDYLEKNNKLSDPNSSGLLLMSMDSVSSCIPRTEGQLETFKDRLPSFPRENI 204 Query: 193 YQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGI 252 +Q +F +A S + + +K+W ++ N++ +G ++A + G A + + + Sbjct: 205 FQAEYNGQS-EKSFYSAASTITSNKNIKNWFVMSANEAGTIGAIKALDQSGL-AENAVAV 262 Query: 253 GINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLI 312 G+ G A E K + + + + +V + E++ N + P K+ V D V I Sbjct: 263 GVGGYVAKDEFQKQNSPLIASAYISATEVGEIAAQELMENLLLNKNIPDKYL-VKDKV-I 320 Query: 313 TRDNFK 318 T+DN+K Sbjct: 321 TKDNYK 326 >UniRef50_C7Q3D4 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinomycetales RepID=C7Q3D4_CATAD Length = 347 Score = 94.4 bits (233), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 68/273 (24%), Positives = 121/273 (44%), Gaps = 7/273 (2%) Query: 26 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV-PDGEKTLNAIDSLAASGAKGF 84 + L +L KQ ++ +F E A LG + + + D +T++ + + A + G Sbjct: 44 ITLTYLQKQGDQQYFIDEADGAKAKAAQLGIGLTVVNLGDDANQTVSDVQAAVAQKSSGL 103 Query: 85 VICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDT-----VPLVMMAATKIGER 139 +I PDP +G +V A+ + ++ DDQ P VP V + T++G Sbjct: 104 IIVPPDPAVGPQVVQLAKDAGIPLLTSDDQVCTNGPDPASCATANLVPRVGFSGTQMGTD 163 Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199 G++ + K GW+ ++ ++ ++ R + + A Q V T Sbjct: 164 VGKKAAELFVKAGWNAADTRTISAWKQDVTVCTDRVKAAKTSFAAGAGAAVQDIDVAT-D 222 Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259 N GA D + + +P VKHW++ G ND V GGV A + G A ++IG+G+ A Sbjct: 223 NTPTGAQDKVAATITANPGVKHWVLWGCNDENVQGGVTALQNAGVSADNVIGVGLGAYLA 282 Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYN 292 + +Q TG +L S G + + +Y+ Sbjct: 283 CKDWGSSQPTGMKAALYISGKNIGALAVQTMYD 315 >UniRef50_B0P682 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P682_9FIRM Length = 361 Score = 81.6 bits (200), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 67/264 (25%), Positives = 117/264 (44%), Gaps = 8/264 (3%) Query: 31 LVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKT-LNAIDSLAASGAKGFVICTP 89 + K WF E + K +D G+ + T ++ ++++ A G ++C P Sbjct: 66 IYKMGTATWFIQEGAASQKVVEDAGYTWKFMDCNQNAATYMDLLNTVIADKVDGVLVCLP 125 Query: 90 DPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQ 149 D L V + VIAVDD G + P V + IG+ G+ ++ Sbjct: 126 DQNLSQTTVDMLTEAGIPVIAVDDALETEDGTKL--APWVGIDGFSIGKAAGEWGVNYIK 183 Query: 150 KRGWDVKES-AVMAITANELDTARRRTTGSMDALKAA--GFPEKQIYQVPTKSNDIPGAF 206 + ES ++ +TA+ + + RT G + AL FPE +I++ ++ G Sbjct: 184 ENNLADDESFGILLMTADTVSSCVPRTEGELAALSEGLPDFPESRIFRADCDTSAEDGN- 242 Query: 207 DAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKA 266 AAN+++ HPE+K WL++G++D + G RA E G AD + +G+ G E Sbjct: 243 QAANAVITGHPEIKKWLVLGVSDESSQGAARAIESAGL-GADSMVMGLGGYLCPDEFENP 301 Query: 267 QATGFYGSLLPSPDVHGYKSSEML 290 + + + DV G + EM+ Sbjct: 302 DSCFRAAAYFSARDVGGTAAQEMV 325 >UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HJG2_ARTCA Length = 319 Score = 77.0 bits (188), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 95/326 (29%), Positives = 142/326 (43%), Gaps = 31/326 (9%) Query: 4 FTKA--LAAIGLAAVMS----QSAMAENL-KLGFLVKQPEEPWFQTEWKFADKAGKDLGF 56 FT A LAA+ LAA S +A + + K+G +V+ P+F K A +A +G Sbjct: 11 FTAAVTLAALSLAACSSGDTQPAAKPKKIEKIGLMVQDMSNPFFSAMDKGAKEAAASIGA 70 Query: 57 EV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQF 115 + A D ID+ G VI D + +A+ + VIAVD Sbjct: 71 TANTQDAQLDLANQNTQIDTFIQQGVNLIVISAVDENGIQPAIERAKQAGIIVIAVD--- 127 Query: 116 VNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRT 175 K D V VM A + GE+ Q L+++M +G V+ + L T R R Sbjct: 128 --TPAKSADAV--VMTDAVQAGEKSCQYLFEQMGGKGN------VLLVDGTPLQTIRDRI 177 Query: 176 TGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG 235 TG + +K FP ++ ND ML P+V+ I GMND + LG Sbjct: 178 TGCNNVVKK--FPGIKVVGQQASKNDRASGLAVTTDMLTATPDVQG--IFGMNDPSALGA 233 Query: 236 VRATEGQGFKAADIIGIGINGV-DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWV 294 V A + Q KA + G++G +AV+EL K + F G+ +P K+ E+ N + Sbjct: 234 VLAVQ-QAHKAGTVKVTGVDGSPEAVAEL-KQSGSPFMGTATQNPAEMVRKAVEVAQNII 291 Query: 295 AKDVEPPKFTEV-TDVVLITRDNFKE 319 D +PP T + L+TRD + Sbjct: 292 --DNKPPAETTILIPSELVTRDTVSQ 315 >UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZRB9_9FIRM Length = 333 Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 77/313 (24%), Positives = 135/313 (43%), Gaps = 33/313 (10%) Query: 16 VMSQSAMAEN---------LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDG 66 +M Q A+A N L + + + +P+ +KA KDL IK+ + DG Sbjct: 17 IMGQCAIAVNAASKTDDDTLNITLINQGSGQPYIAAYKNCFEKAEKDLN---IKVNLVDG 73 Query: 67 ----EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK- 121 + NAI + +SGA G VI DP V +A ++V A+ Q + Sbjct: 74 GWDANQQANAIQNAISSGADGIVISPVDPSAVCTYVDEALDAGIEVCALTTQIGTGDAED 133 Query: 122 PM--DTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 P+ +TV LV T++G R ++ E R + A++ T DT R+ + Sbjct: 134 PVYPETVGLVGHIETEVG-RTAMDIAAEALDRSGKI---AIIEGTPGMSDTEGRKK--GI 187 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 D + +P+ ++ + A+ A +++ +PEV+ L++ +D+ +G +A Sbjct: 188 DE-ENKEYPDIEVVSRVCGEWVVDKAYTAMQNIIQSNPEVE--LVICHSDNMAVGAAKAL 244 Query: 240 EGQGFK-AADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 E I+GIG DA+ + K + YG+++ P+ Y + E V + Sbjct: 245 EDADMTDKVKIVGIG-GSKDALDLIKKGE---IYGTIMYVPETEAYTALEATAKVVRGEA 300 Query: 299 EPPKFTEVTDVVL 311 E F V D+ L Sbjct: 301 EKETFYNVQDLPL 313 >UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter sp. FB24 RepID=A0JVZ4_ARTS2 Length = 318 Score = 53.9 bits (128), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 69/266 (25%), Positives = 109/266 (40%), Gaps = 26/266 (9%) Query: 8 LAAIGLAAVMSQSAMAEN--LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVP 64 +IGL + S A + +K+G V P+FQ E K A+ GK +G EV+ ++A Sbjct: 21 FGSIGLTGCATASGAAGDRPMKIGVTVANSTNPFFQQESKTAESYGKSVGAEVLSQVANE 80 Query: 65 DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124 D + N ID +G K VI D V +A + VI VD+Q NA Sbjct: 81 DVQTQSNQIDQFITAGVKFIVIDAADTDGVGPAVKRAVSAGIPVIGVDNQSKNA------ 134 Query: 125 TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA 184 TV + + GE + L ++ +G + + + R TG L Sbjct: 135 TVN-ITTDNKQAGEISCRSLADKLGGKGK------IAILNGTPVSAVDDRVTGCKGIL-- 185 Query: 185 AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF 244 +P+ +I N A A +L +P++ + +ND + +G A E +G Sbjct: 186 GQYPDIKIVADQRGENSRDSALPIATDILTANPDLDGFF--AINDPSAVGVQLAAEQKG- 242 Query: 245 KAADIIGIGINGVDAVSELSKAQATG 270 A ++ I VD S + A A G Sbjct: 243 --ASVV---ITSVDGASSATDAIAAG 263 >UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional regulator n=23 Tax=Bacteria RepID=C6B4I0_RHILS Length = 313 Score = 52.8 bits (125), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 64/291 (21%), Positives = 123/291 (42%), Gaps = 20/291 (6%) Query: 28 LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV-PDGEKTLNAIDSLAASGAKGFVI 86 + + + P+F+ E A+ K+LG+E + + D K ID+ GAK ++ Sbjct: 30 IAIITPAHDNPFFKAEAVGAEAKAKELGYETLLMTHDDDANKQSEMIDTAIGRGAKAIIL 89 Query: 87 CTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYK 146 A V KA+ + +D + +NA G + + ++G QE K Sbjct: 90 DNAGADASVAAVKKAKDAGIPSFLIDRE-INATGVAVAQIVSNNYQGAQLG---AQEFVK 145 Query: 147 EMQKRGWDVKESAVMAITANELDT-ARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205 M ++G V+ + E DT A R+ G D + +P+ + + + A Sbjct: 146 LMGEKGNYVE------LVGKESDTNAGIRSQGYHDVID--DYPDLKSVAKQSANWSQTEA 197 Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSK 265 + ++L +P++K ++ ND+ +G + A + G K D+I +G +G + V + K Sbjct: 198 YSKMETILQANPDIKG--VISGNDTMAMGAIAALQAAGRK--DVIVVGFDGSNDVRDSIK 253 Query: 266 AQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316 + G ++L + E ++ P + ++ D VLI DN Sbjct: 254 --SGGIKATVLQPAYAQAQLAVEQADAYIKNKTTPKEEKQLMDCVLINADN 302 >UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Proteobacteria RepID=A6VWG6_MARMS Length = 314 Score = 49.3 bits (116), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 83/328 (25%), Positives = 138/328 (42%), Gaps = 41/328 (12%) Query: 4 FTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV 63 F K+ A L + S S +A N + + + P+F+ + AD K+LG++ + +A Sbjct: 6 FLKSCLAATLLTLASTSVLASNGLIAIITPSHDNPFFKAGAEGADAKAKELGYDTL-VAS 64 Query: 64 PDGE--KTLNAIDSLAASGAKGFVI--CTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 DG+ K I++ A AK ++ D +GS K G + D+ +N Sbjct: 65 HDGDVNKQNQLIETAIARQAKAVILDNADADASIGSLERLKKAGIPAFLY---DREINKT 121 Query: 120 GKPMDTVPLVMMAATKI------GERQGQELYKEMQKRGWDVKESAVMAITANELDT-AR 172 G +A T+I G + E + E+ G + E + E DT A+ Sbjct: 122 G----------IAVTQIVSNNFQGAQLAGEKFAELMGDGGEYVE-----LLGPESDTNAQ 166 Query: 173 RRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTV 232 R+ G D L FPE ++ + + AF S+L +P +K +I G NDS Sbjct: 167 VRSEGFHDILD--NFPEFKMVARQSANWSQTEAFSRMESILQANPNIK-GVITG-NDSMA 222 Query: 233 LGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEM--L 290 LG A + G K D+ +G +G+D V + S + + +++ + +E L Sbjct: 223 LGAEAALQAAGRK--DVFIVGFDGLDYVRD-SIIKGSNIKATIMQPAYAQAQRVAEQADL 279 Query: 291 YNWVAKDVEPPKFTEVTDVVLITRDNFK 318 Y P K ++ D VLI N K Sbjct: 280 YIRTGSTGLPEK--QLMDCVLIDSSNAK 305 >UniRef50_B8D164 ABC-type sugar transport system, periplasmic component n=6 Tax=Bacteria RepID=B8D164_HALOH Length = 308 Score = 48.5 bits (114), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 61/243 (25%), Positives = 108/243 (44%), Gaps = 20/243 (8%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDSL 76 SQ A+A+++ +G + + P++ + +KA D G E ++ IA D K ++ ++ Sbjct: 21 SQFALADDITIGASLLTQQHPFYVQLKQAMEKAADDNGVELIVSIANQDLNKQISDVEDF 80 Query: 77 AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136 G V+ D K + KA+ + VI VD ++A+G +D V Sbjct: 81 IVRGVDAIVLSPVDSKGVVGAIIKAKRAGIPVITVD---ISAEGVEVDA--HVATDNYYG 135 Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV- 195 G G+ + K + +G V I + + R R G +A+ + +P +I + Sbjct: 136 GRIAGETMAKVLNGKGQ------VAIIDYPVVQSVRDRVAGFKEAV--SKYPGIEIVAIQ 187 Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255 P + P A + A ++L HPEV I G D L V A + G + D+ IG + Sbjct: 188 PGITR--PEALNTAQNILQAHPEVDG--IFGFGDDAALASVVAVKSAGME-DDVKVIGFD 242 Query: 256 GVD 258 G++ Sbjct: 243 GME 245 >UniRef50_B2JTD1 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Burkholderia phymatum STM815 RepID=B2JTD1_BURP8 Length = 322 Score = 48.1 bits (113), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 84/331 (25%), Positives = 132/331 (39%), Gaps = 41/331 (12%) Query: 1 MHKFTKALAAIGLA---AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE 57 M K K L IGLA A M+ A A+ + LG++ + P+ + + A K G + Sbjct: 1 MKKCFKKLGLIGLAGAMAFMTDVAAAKEITLGYVAAGMQYPFNVAAARGFEAAAKAAGVK 60 Query: 58 VIKI-AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116 I + A EK NA+D L A G + D + + V +A +++ +AV Q Sbjct: 61 TIVLDAKTSVEKQGNAVDDLIAQKVDGIAVLPIDAVVAQSWVERATSHNIPFVAVATQIG 120 Query: 117 NAKGKPMDTV-----PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAIT--ANELD 169 + + ++ V LV +G Q K + K +A +AI A Sbjct: 121 DPQKHAINDVYPKLTALVASDEVHVGTDAAQIAAKLLPK-----DRTAKIAIVEGAPGYP 175 Query: 170 TARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMND 229 T + T G + L AG + + PT G ++LV HP+V LI D Sbjct: 176 TVWQVTKGFKEGLDKAGVKYQIVASQPTDWTPEKGE-SVCQNILVAHPDVD--LIFNQAD 232 Query: 230 STVLGGVRATEGQGFKAADI----IGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYK 285 V+G RA G A + +GIN V V ++ G++ P G + Sbjct: 233 DMVIGCARAVRAAGSHAKLVSRGGSKLGINAVK-VGDVD--------GTVCIQPGKMGER 283 Query: 286 SSEMLYNWVAK---------DVEPPKFTEVT 307 + + LY V DV+ P+ T+ T Sbjct: 284 AFKALYAAVTDPNAPKAKFIDVDTPQVTKAT 314 >UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-binding protein n=7 Tax=Bacteria RepID=B9KA11_THENN Length = 326 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 67/294 (22%), Positives = 122/294 (41%), Gaps = 18/294 (6%) Query: 27 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDSLAASGAKGFV 85 K+ ++ PWF + A + + LG+E I + D K D++ A+G + Sbjct: 35 KMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAII 94 Query: 86 ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145 D A V +A+ + V V D+ +NA+G V + G G+ Sbjct: 95 FNPTDADGSIANVKRAKEAGIPVFCV-DRGINARGL---AVAQIYSDNYYGGVLMGEYFV 150 Query: 146 KEMQKRGWDVKE---SAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDI 202 K ++++ D KE + ++ I + + R+ G + +PE ++ + D Sbjct: 151 KFLKEKYPDAKEIPYAELLGILSAQ--PTWDRSNGFHSVVDQ--YPEFKMVAQQSAEFDR 206 Query: 203 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSE 262 A+ +L HPE+K I ND+ LG ++A E G DI G +G + V Sbjct: 207 DTAYKVTEQILQAHPEIK--AIWCGNDAMALGAMKACEAAG--RTDIYIFGFDGAEDVIN 262 Query: 263 LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316 K + +++ P + + E ++ + P+ VT V L+TR+N Sbjct: 263 AIK-EGKQIVATIMQFPKLMARLAVEWADQYLRGERSFPEIVPVT-VELVTREN 314 >UniRef50_A1WNV9 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Proteobacteria RepID=A1WNV9_VEREI Length = 374 Score = 47.0 bits (110), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 62/254 (24%), Positives = 113/254 (44%), Gaps = 19/254 (7%) Query: 8 LAAIGLAAVMSQSAMAENL--KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVP 64 +AA+ LAA + A A N+ K+G++ W+Q K GKDLG EV ++ A Sbjct: 40 VAAVTLAATFAAPAQARNMPRKIGYVTNYATHEWYQNVIKGMKAHGKDLGIEVEVQDANL 99 Query: 65 DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124 D K + A + A G +I + + ++ KA+ ++ V+ +G P+ Sbjct: 100 DIAKQVAAAEDFIAKGVDVLIITPVNEEGVVPLLRKAKAANIPVVL--------EGNPVK 151 Query: 125 -TVPLVMMAATKIGERQGQELYKEMQKR-GWDVKESAVMAITANELDTARRRTTGSMDAL 182 +V + G G E K +K+ G K VM + L R+ G MD + Sbjct: 152 GMTTMVAICDYDTGYFSGIEAGKYAKKKLGGTAK---VMNVGLPLLSATVLRSKGFMDGI 208 Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242 + P + + A + +++ L ++ ++ +I G+NDS+ LGG++A + Sbjct: 209 RTV-IPGATMVHDLDGGGNPDRALEVSSAALAKNADIN--IIYGINDSSSLGGLQAWKAA 265 Query: 243 GFKAADIIGIGING 256 G +++ +G G Sbjct: 266 GKSQDNLLTVGTGG 279 >UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LH93_9FIRM Length = 362 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 70/321 (21%), Positives = 124/321 (38%), Gaps = 47/321 (14%) Query: 25 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTLNAIDSLAASGA 81 + + +VK P+ KA +D+GFE + ++ E + ++ + SG Sbjct: 58 DYTIAMIVKNNTNPFMNGVLNGFSKAAEDIGFEAMLLSPQTADSNEDQVRLVEDMIQSGV 117 Query: 82 KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141 IC + A + +D + + +G +T + TK + Sbjct: 118 DA--ICIHPVDSNGIVPALEKAWDAGIPVL------VQGTQANTDKIYGWYGTKYADEA- 168 Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAG-----FPEKQIYQVP 196 L E D K + V T ++ ++D + A +P+ + + Sbjct: 169 -TLIAEYLAEKLDYKGNVVYI-------TGPQQAQNAIDEINATHAVFEKYPDLNLIE-- 218 Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHW------LIVGMNDSTVLGGVRATEGQGFKAA-DI 249 + PG F+ A SM V ++ + ++G ND +G + A E G+K + Sbjct: 219 ----EQPGNFNRATSMSVMENLIQKYSEDDIDWVIGGNDECAMGAIAAMENAGWKLGFED 274 Query: 250 IGIGINGVDAVSELSKAQATG-FYGSLLPSPDVHGYKSSEMLYNWVAK-DVEP-----PK 302 GIG++G+D + S A G S+ P P GY + L N++ D+ P P Sbjct: 275 GGIGVSGIDCNKDASYAMQEGTLTVSVNPDPVSLGYIGAAFLVNYLNDGDLFPEYVAWPD 334 Query: 303 FTEVTDVVLITR--DNFKEEL 321 F DVV+ DN+ E L Sbjct: 335 FQTADDVVIDASNIDNYIENL 355 >UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gammaproteobacteria RepID=A8GZV8_SHEPA Length = 299 Score = 45.8 bits (107), Expect = 0.002, Method: Compositional matrix adjust. Identities = 59/258 (22%), Positives = 108/258 (41%), Gaps = 20/258 (7%) Query: 2 HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI 61 HK + L+A L+ S SA A++ + ++ P+F T A+ +LG+++I + Sbjct: 7 HKVSVLLSAALLSVSTSFSASAQD-AIAIVLSTMNNPFFVTMKDGAEAKAAELGYKLIAL 65 Query: 62 -AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120 + D K L ++ L G K +I D + + A ++ V+ +D + Sbjct: 66 DSQNDPSKELANVEDLTMRGVKAILINPTDALAVTNAIRTANRANIPVLTLDRTAAHG-- 123 Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180 D V + GE G+ + +++ K ++ + +A AR R G + Sbjct: 124 ---DIVSHIASDNIAGGELAGEFIAQQLGKNAKVIQLEGIAGTSA-----ARERGEGFSN 175 Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240 A+ A F ++ D + +ML + +V+ + ND LG +RA E Sbjct: 176 AVTANNF---ELLSSQPADFDRSKGLNVMENMLAANGDVQA--VFAQNDEMALGALRAIE 230 Query: 241 GQGFKAADIIGIGINGVD 258 G DI+ IG +G D Sbjct: 231 AAG---KDILVIGFDGTD 245 >UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkholderia graminis C4D1M RepID=B1G1G9_9BURK Length = 369 Score = 45.1 bits (105), Expect = 0.004, Method: Compositional matrix adjust. Identities = 67/304 (22%), Positives = 124/304 (40%), Gaps = 19/304 (6%) Query: 27 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI-AVPDGEKTLNAIDSLAASGAKGFV 85 K+GF V +F +K K+ GF++++ A D ++ +N +L + G V Sbjct: 69 KIGFSVSTLNNAFFVGLKAGVEKGAKEQGFDLVQTNANGDAQQQVNDAINLLSQGVTALV 128 Query: 86 ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145 + D K V KA ++ V +D K V +G+ + + Sbjct: 129 LNPIDSKAIIPAVEKANAMNIPVFTLDRGSDGGK-----VTSFVASDNVALGQTAAKWIA 183 Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205 ++ KR K + V I A R G D + A +P+ ++ + D + Sbjct: 184 DQLTKRYGSAKGNVVDLIGLVGTTAATDREKGFSDEI--AKYPDIKVVARQEGAFDQEKS 241 Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQG-FKAAD----IIGIGINGVDAV 260 +A ++L ++P++ + G ND +G +A + G +K D I+ IG +G Sbjct: 242 LNAMTNILQKYPQIDA--VFGANDDNTVGAEKAIDNAGRYKPLDDKQHILVIGADGT--A 297 Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320 LS +A ++ +P KS + + ++ AK P + T +LI + N + Sbjct: 298 QALSAIRAGKQDATISQNPIQMAAKSLQFVADYTAKKDVPANYAWPT--LLIDKSNIDSD 355 Query: 321 LEKK 324 KK Sbjct: 356 ATKK 359 >UniRef50_D0LRU4 D-xylose transporter subunit XylF n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LRU4_HALO1 Length = 374 Score = 44.7 bits (104), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 8/123 (6%) Query: 26 LKLGFLVKQPEEPWFQTEWK-FADKAGKDLGFEVIKIAVPDGEKT-LNAIDSLAASGAKG 83 LK+GFL+K +E +Q + K F DKA + LG EV+ + + E+T L+ +++ A GAK Sbjct: 52 LKVGFLLKTMQEERYQRDKKAFIDKA-QSLGAEVLFDSANNNEQTQLSKFETMLAQGAKV 110 Query: 84 FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143 V+ + +V A ++V+ D VN P+D VM + +G+ QG+ Sbjct: 111 IVLQPVNTGTAGNMVKMANEEGVRVVGYDSMLVNG---PLDV--QVMQDSWAVGKLQGEA 165 Query: 144 LYK 146 + + Sbjct: 166 MVE 168 >UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FZM3_ACICJ Length = 339 Score = 43.5 bits (101), Expect = 0.010, Method: Compositional matrix adjust. Identities = 64/300 (21%), Positives = 112/300 (37%), Gaps = 26/300 (8%) Query: 23 AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEK---TLNAIDSLAAS 79 A++ + K P++ + AD A K G V A G + +++ Sbjct: 41 AKHYHFTLITKSNASPYWLAVREGADAAAKKFGVSVAFEAPASGTDLAGQIGMVNNAVTG 100 Query: 80 GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139 G G ++ +P+ V A + + V+ VD + +A + +G Sbjct: 101 GTDGIILAAQNPQALLKPVKSALAHHIPVVTVDSGL-------SPNISDCFLATSNVGAA 153 Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPE-KQIYQVPTK 198 Y G K + + T R G M +K+ +P K++ + Sbjct: 154 AALAKYTADHLMGG--KGQYAIVDFNHTASTGIARPKGFMLGMKS--YPHIKKMGPIQYS 209 Query: 199 SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVD 258 +ND+ A +ML Q+P +K +I G ND LG A + K + + G D Sbjct: 210 NNDVSAGLRIATTMLTQYPHLK--VIFGANDRAALGPAEAVQRAHAK------VKVVGFD 261 Query: 259 A-VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317 A + E++ +A S+L SP GY + L + + P + T L+T N Sbjct: 262 ADLGEIALVKAGIIQASILQSPYDMGYYAVVALLDKLDGKTLPKRIN--TPYFLLTPKNL 319 >UniRef50_A5FZZ2 Monosaccharide-transporting ATPase n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FZZ2_ACICJ Length = 369 Score = 43.1 bits (100), Expect = 0.013, Method: Compositional matrix adjust. Identities = 69/261 (26%), Positives = 105/261 (40%), Gaps = 43/261 (16%) Query: 7 ALAAIGLAAVMSQSAMAENLK--------LGFLV--------KQPEEPWFQTEWKFADKA 50 A+ A GL A +QS ++ + FL+ +Q + PWF AD Sbjct: 15 AVGAFGLTAAHAQSVTQPSVHQISSKKTTIAFLLPENSSPRYEQVDRPWFIKMAHAADPN 74 Query: 51 GKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIA 110 K ++ A + LN +S ++GA V+ D K G+AIV A +KVI+ Sbjct: 75 AK----LIVSNANSSPDTQLNQAESAISNGADVLVVDPVDGKAGAAIVNYAARNHVKVIS 130 Query: 111 VDDQFVNAKGKPMDTVP--LVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANEL 168 D D+ P V TK+GE QG+ + K + G +VM I Sbjct: 131 YDRLI-------QDSKPDYYVSFDNTKVGELQGEYIAKHTKPGG------SVMMINGAPT 177 Query: 169 D-TARRRTTGSMDALKAAGFPEKQI---YQVPTKSNDIPGAFDAANSMLVQ-HPEVKHWL 223 D A G+M+ L F ++ Y V T AF+ + L + H +V Sbjct: 178 DPNAFDFRKGAMNVLGPL-FKSGKLHLAYSVMTPDWSPQNAFEESQQALTRLHNKVN--A 234 Query: 224 IVGMNDSTVLGGVRATEGQGF 244 ++ ND T G +RA + G Sbjct: 235 VLAANDGTASGVIRALQAVGL 255 >UniRef50_C4G7J1 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G7J1_ABIDE Length = 360 Score = 43.1 bits (100), Expect = 0.015, Method: Compositional matrix adjust. Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 13/127 (10%) Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260 D A D A +M+ +P +K I ND+ +G V A + G I + G D Sbjct: 242 DRTKAMDVATNMISANPNLKA--IYCCNDTMAMGAVEAVKKSGKD------IKVCGTDGN 293 Query: 261 SELSKAQATG-FYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDV----VLITRD 315 + KA A G ++ +P + G + ++ V ++ +P EVT VLIT+D Sbjct: 294 DDAIKAVADGELAATVAQNPKLVGATALNLMVKAVKENAKPEAGAEVTQTGIAAVLITKD 353 Query: 316 NFKEELE 322 N KE L+ Sbjct: 354 NAKEYLK 360 >UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B7W7_CLOBO Length = 325 Score = 42.7 bits (99), Expect = 0.019, Method: Compositional matrix adjust. Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 23/248 (9%) Query: 28 LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTL----NAIDSLAASGAKG 83 + ++K +++T A+ A K+LG +V ++ P+ E + + I+ G Sbjct: 41 VAVVLKALNSDYWKTVQAGANDAAKELGVKV-QVLGPNAETDVVGQTSLIEDQIVKGVDA 99 Query: 84 FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143 V+ P KA + V+ +D K K V +AA K+G G+ Sbjct: 100 LVVAPLQPNAAITTFDKAEKEKIPVVLIDTDANWDKKKSF--VGTGNIAAGKLG---GEY 154 Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203 + K+++K + A++ T RT G+ AL+AAG ++ ++ +++ Sbjct: 155 ISKKLKK-----GDEAIIIRGVPGDRTQDERTQGAQKALEAAGI---KVVEIQPANSERE 206 Query: 204 GAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV-DAVSE 262 A ++L HP +K + ND LG V+A + G K +II IG++G DA+ Sbjct: 207 KAISVMENLLQTHPNIKG--VFCTNDEMALGAVKALQQAGKK--NIISIGVDGSPDALKS 262 Query: 263 LSKAQATG 270 + + TG Sbjct: 263 IKEGGLTG 270 >UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MXF0_9FUSO Length = 328 Score = 42.4 bits (98), Expect = 0.025, Method: Compositional matrix adjust. Identities = 68/302 (22%), Positives = 130/302 (43%), Gaps = 32/302 (10%) Query: 24 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGE----KTLNAIDSLAAS 79 + +K+ + K + ++++ A KAG++LG EV I P+ E K + +++ Sbjct: 36 DKIKIELVSKGYQHEFWRSVEAGAKKAGEELGVEVNFIG-PEKETEIGKQVGMVENAINK 94 Query: 80 GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI-GE 138 I DP + + KA + V+ D N KG D + K+ G Sbjct: 95 KVSALGIAALDPDALAVVAKKAMDAKIPVVTFDS---NVKG---DITSSFIATDNKVAGA 148 Query: 139 RQGQELYKEMQKRGWDVKESAVMAITANE--LDTARRRTTGSMDALKAAGFPEKQIYQVP 196 G++L K + +G +AI ++ TA R G +AL A +P+ +I Sbjct: 149 MAGEQLAKLINGKGK-------VAIVSHNPGTTTAIEREAGFREAL--AKYPDIKILNTQ 199 Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256 D A ++ +P++ I G N+ ++ G + E +G + + G Sbjct: 200 FSDGDKSKALAITLDIINANPDIAG--IYGTNEPSIFGIAKGVEEKGLTGKVV----LVG 253 Query: 257 VDAVSELSKAQATG-FYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315 +D+ +L+K G G ++ P GY++ + LY ++K + K + T +L+T++ Sbjct: 254 IDSSEDLAKFLEKGVISGLVIQDPYNMGYQTVQQLYK-LSKGEKVEKRID-TGAILVTKE 311 Query: 316 NF 317 N Sbjct: 312 NI 313 >UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRM5_ALIAD Length = 321 Score = 42.4 bits (98), Expect = 0.026, Method: Compositional matrix adjust. Identities = 55/234 (23%), Positives = 94/234 (40%), Gaps = 15/234 (6%) Query: 20 SAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAA 78 +A + +KLGF V P+F + K LG +V I D LN ++ L Sbjct: 39 TASTKPIKLGFAVSTLNNPFFVAMSNGVQEEAKKLGVQVTILNGNNDPATQLNQVEDLIQ 98 Query: 79 SGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGE 138 ++ D + S V +A + VI +D KG + + + + G+ Sbjct: 99 QHVNAIILNPTDSQSLSTAVEQANRAHIPVITLDRSV--TKG---NVACFIASNSVEAGK 153 Query: 139 RQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTK 198 EL K + +G V+ V+ +A E D R G + + A P ++ T Sbjct: 154 MAADELIKALGGKGQVVELQGVIGTSA-EAD----REKGFDEEIGKA--PGIRVVARQTA 206 Query: 199 SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGI 252 + D A + ++L HP ++ + ND LG ++A + G I+GI Sbjct: 207 NFDRSQALNVMQNILQAHPNIQG--VFAQNDEMALGALKAIQEAGKHNIKIVGI 258 >UniRef50_A0QZW4 D-ribose-binding periplasmic protein RbsB n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0QZW4_MYCS2 Length = 372 Score = 42.0 bits (97), Expect = 0.028, Method: Compositional matrix adjust. Identities = 53/235 (22%), Positives = 100/235 (42%), Gaps = 27/235 (11%) Query: 26 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDG-EKTLNAIDSLAASGAKGF 84 +K+ F V+ P+ + + A++ GK LG +V I+ D + N I + A G Sbjct: 92 IKITFSVEGLSHPFLVKQKQLAEETGKRLGAQVNVISANDDVNQQFNDIQTAIAQGTDAL 151 Query: 85 VICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK-PMDTVPLVMMAATKIGERQGQE 143 ++ + A++ +A + F + KG ++ V+ + G++ G E Sbjct: 152 MMMPATTQGLDAVLKQAEAAQIPY------FFSQKGMLGVEPASQVLAPYSNEGQQLG-E 204 Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203 E K DVK + + I ++ AR + + L++ F + P Sbjct: 205 WVVEHYKGQEDVKVAIISGIPGDQSSDARVNSF-LLPLLRSCNF---------NVVANQP 254 Query: 204 GAF------DAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGI 252 G + AA +ML +P++ L+ G ND LGG+ A + G + D++G+ Sbjct: 255 GNYRRGDSEKAAQNMLAANPDID--LLFGANDEAALGGIAALKSSGRQGVDVVGL 307 >UniRef50_A7II12 Periplasmic binding protein/LacI transcriptional regulator n=42 Tax=Bacteria RepID=A7II12_XANP2 Length = 347 Score = 41.6 bits (96), Expect = 0.042, Method: Compositional matrix adjust. Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 11/123 (8%) Query: 1 MHKFTKALAAI-----GLAAVMSQSAM---AENLKLGFLVKQPEEPWFQTEWKFADKAGK 52 MH + + L A GLAA A A+ +G ++K P+F + A+ A Sbjct: 1 MHLWPRLLMAASVAWAGLAATSPAGAAEKPADKPIVGIVIKTSTNPFFVKMKEGAEAAAA 60 Query: 53 DLGFEVIKIAVP---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVI 109 LG E+ A D + + A++SL A+GAKG +I D + ++ +AR + VI Sbjct: 61 RLGLELRSFAGKMDGDTDAQVTAVESLIAAGAKGILITPSDSRAIVPVLEQARAKGILVI 120 Query: 110 AVD 112 A+D Sbjct: 121 ALD 123 >UniRef50_Q28MQ1 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Alphaproteobacteria RepID=Q28MQ1_JANSC Length = 390 Score = 40.8 bits (94), Expect = 0.071, Method: Compositional matrix adjust. Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 17/144 (11%) Query: 174 RTTGSMDALKAA--GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDST 231 RT G M +AA FPE QI ++ N + +F N++L + PE + +ND Sbjct: 206 RTEGQMAGFRAALPAFPEDQILTFDSR-NTLEESFTQTNNLLSRIPEGVPIMGTAINDQA 264 Query: 232 VLGGVRATEGQGFKAADIIGIGIN-GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEML 290 G +RA + G + ++G+G + G SE A G + P+ +G + Sbjct: 265 ATGILRAAQQDGREMITVVGLGADEGETLASEPDFVAAVGSF------PERYGNSLIPIA 318 Query: 291 YNWVAKDVEPPKFTEVTDVVLITR 314 +A++ EV D VLI Sbjct: 319 MAMLAEE-------EVPDAVLINH 335 >UniRef50_B5ZRZ8 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Rhizobium RepID=B5ZRZ8_RHILW Length = 305 Score = 40.4 bits (93), Expect = 0.098, Method: Compositional matrix adjust. Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 6/106 (5%) Query: 20 SAMAENLKLGFLVKQPEEPWFQT-EWKFADKAGKDLGFEVIK---IAVPDGEKTLNAIDS 75 S E +KLGF+ K P P+F T E D A ++ G E+I + D E + I+S Sbjct: 20 SLAQEPIKLGFITKFP-VPFFATMENAAKDYAKRNPGVEIIYGQGTSATDIEGQIAQIES 78 Query: 76 LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121 + G +G + DP + +A+ KA +KV+ +D+ + KG+ Sbjct: 79 MVTRGVQGIALTPVDPTVSTAL-DKAVASGVKVVLMDNNIPDWKGR 123 >UniRef50_A6W303 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Marinomonas RepID=A6W303_MARMS Length = 325 Score = 40.0 bits (92), Expect = 0.100, Method: Compositional matrix adjust. Identities = 67/295 (22%), Positives = 126/295 (42%), Gaps = 37/295 (12%) Query: 7 ALAAIGLAAVMSQSAMAENLK-LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP- 64 ++ A+ L+ ++SQS+ + LK +G V P+F + A ++L E +K+ + Sbjct: 31 SVIAVSLSPLVSQSSEPQPLKSIGISVADLGNPYFVQLVETASVKAEELAGEPVKMLIRS 90 Query: 65 ---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121 D ++ + I+ V+ D +A+VAKA+ +KVIAVD VNA+G Sbjct: 91 DAYDWQRQIGQINDFIDQKVDLIVLTAADEYKVAAVVAKAQRAGIKVIAVD---VNAQGA 147 Query: 122 ----PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177 D V +A K+ E+ + +G V + V+ + E R G Sbjct: 148 DATITTDNVQAGAIACEKLAEK--------INYQGNFVIINGVLVSSVIE------RVAG 193 Query: 178 SMDALKAAGFPEKQIYQVPTKSN---DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLG 234 AL +P+ I + + N + G +A ++ ++ + + +ND T G Sbjct: 194 CKSALN--KYPD--ITLLSDRMNGTGSVEGGMEAMTYLMEEYDHIDA--VFTINDPTAFG 247 Query: 235 GVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEM 289 +RA + K + + I+G +E+ K Q + + + P K+ E+ Sbjct: 248 ALRAAQQANRK--EFVLASIDGAPFATEIIKQQDNPWIATAVQRPIPMAEKAIEI 300 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P02924 L-arabinose-binding periplasmic protein n=117 Ta... 396 e-109 UniRef50_C4XAG8 L-arabinose-binding periplasmic protein n=11 Tax... 389 e-107 UniRef50_Q3JM30 L-arabinose ABC transporter, periplasmic L-arabi... 315 2e-84 UniRef50_Q2T4S7 L-arabinose ABC transporter, periplasmic L-arabi... 296 8e-79 UniRef50_Q987E6 L-arabinose-binding protein n=1 Tax=Mesorhizobiu... 256 1e-66 UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-bindi... 237 3e-61 UniRef50_A6LT79 Periplasmic binding protein/LacI transcriptional... 235 1e-60 UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional... 221 3e-56 UniRef50_B0P682 Putative uncharacterized protein n=1 Tax=Anaerot... 215 1e-54 UniRef50_C7Q3D4 Periplasmic binding protein/LacI transcriptional... 214 4e-54 UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional... 203 9e-51 UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional... 196 7e-49 UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantel... 194 4e-48 UniRef50_B8D164 ABC-type sugar transport system, periplasmic com... 192 1e-47 UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminoc... 187 4e-46 UniRef50_B2JTD1 Periplasmic binding protein/LacI transcriptional... 186 9e-46 UniRef50_A1WNV9 Periplasmic binding protein/LacI transcriptional... 183 8e-45 UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional... 177 4e-43 Sequences not found previously or not previously below threshold: UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 ... 182 2e-44 UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional... 162 1e-38 UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n... 160 6e-38 UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=... 156 1e-36 UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional... 156 1e-36 UniRef50_B5XZZ5 Sugar ABC transporter, periplasmic sugar-binding... 153 7e-36 UniRef50_C6C3I7 Periplasmic binding protein/LacI transcriptional... 153 9e-36 UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostri... 151 3e-35 UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional... 151 4e-35 UniRef50_Q1M6L8 Putative substrate-binding component of ABC tran... 149 2e-34 UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD 148 4e-34 UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic com... 148 4e-34 UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepI... 147 7e-34 UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium bot... 146 7e-34 UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chtho... 145 2e-33 UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkh... 144 3e-33 UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerot... 144 4e-33 UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Prot... 144 4e-33 UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-bin... 143 6e-33 UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional... 140 5e-32 UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Therm... 140 6e-32 UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional... 140 7e-32 UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gamm... 140 8e-32 UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH 140 8e-32 UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Paste... 139 9e-32 UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S4... 138 3e-31 UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional... 137 5e-31 UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional... 136 1e-30 UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clo... 135 2e-30 UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8... 135 2e-30 UniRef50_A5FXE6 Periplasmic binding protein/LacI transcriptional... 135 2e-30 UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostri... 134 3e-30 UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional... 134 3e-30 UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional... 134 4e-30 UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protei... 134 4e-30 UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Prote... 134 5e-30 UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-b... 134 5e-30 UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional... 134 6e-30 UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Ta... 133 6e-30 UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional... 133 7e-30 UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional... 133 7e-30 UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transpo... 133 7e-30 UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional... 133 8e-30 UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic com... 133 8e-30 UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostri... 133 1e-29 UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotr... 133 1e-29 UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional... 132 1e-29 UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Pr... 132 2e-29 UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic com... 132 2e-29 UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostri... 132 2e-29 UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding... 131 3e-29 UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizo... 131 3e-29 UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional... 131 3e-29 UniRef50_B3T6P5 Putative periplasmic binding protein and sugar b... 131 5e-29 UniRef50_A6W303 Periplasmic binding protein/LacI transcriptional... 130 5e-29 UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminoc... 130 8e-29 UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional... 130 8e-29 UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional... 130 8e-29 UniRef50_Q0SII4 ABC ribose transporter, substrate-binding compon... 129 1e-28 UniRef50_P39325 ABC transporter periplasmic-binding protein ytfQ... 129 1e-28 UniRef50_UPI0001C31742 periplasmic binding protein/LacI transcri... 129 1e-28 UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea l... 129 2e-28 UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostri... 129 2e-28 UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacte... 129 2e-28 UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyado... 128 2e-28 UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthroba... 128 3e-28 UniRef50_C1D9L7 RbsB protein n=1 Tax=Laribacter hongkongensis HL... 128 3e-28 UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional... 128 4e-28 UniRef50_A6DJR9 Periplasmic binding protein/LacI transcriptional... 128 4e-28 UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional... 127 5e-28 UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostri... 127 5e-28 UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional... 127 5e-28 UniRef50_A7II12 Periplasmic binding protein/LacI transcriptional... 127 6e-28 UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding prot... 127 7e-28 UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alph... 126 8e-28 UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_... 126 1e-27 UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding... 126 1e-27 UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea f... 126 1e-27 UniRef50_UPI0001B4C057 putative D-ribose-binding protein compone... 126 1e-27 UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostri... 126 1e-27 UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 T... 125 2e-27 UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n... 125 2e-27 UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional... 125 2e-27 UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional... 125 2e-27 UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostri... 124 3e-27 UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia... 124 4e-27 UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter... 124 4e-27 UniRef50_B2SY92 Periplasmic binding protein/LacI transcriptional... 124 4e-27 UniRef50_B2IIE3 Periplasmic binding protein/LacI transcriptional... 124 4e-27 UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional... 124 4e-27 UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-bindin... 124 5e-27 UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional... 124 5e-27 UniRef50_B2JDH5 Periplasmic binding protein/LacI transcriptional... 124 6e-27 UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Cor... 124 6e-27 UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic suga... 124 6e-27 UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geo... 123 6e-27 UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Prot... 123 8e-27 UniRef50_C0C383 Putative uncharacterized protein n=2 Tax=Clostri... 123 1e-26 UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Ta... 123 1e-26 UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasm... 123 1e-26 UniRef50_C6V848 D-ribose-binding periplasmic protein n=11 Tax=Ga... 123 1e-26 UniRef50_A1WJM2 Periplasmic binding protein/LacI transcriptional... 123 1e-26 UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport ... 122 2e-26 UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding... 122 2e-26 UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional... 122 2e-26 UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales Rep... 122 2e-26 UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protei... 122 2e-26 UniRef50_A9CF36 ABC transporter, substrate binding protein (Suga... 121 2e-26 UniRef50_UPI0001B51147 putative ABC transporter substrate-bindin... 121 2e-26 UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostri... 121 2e-26 UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional... 121 3e-26 UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional... 121 4e-26 UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette tran... 121 5e-26 UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional... 120 6e-26 UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional... 119 9e-26 UniRef50_C0C4T0 Putative uncharacterized protein n=1 Tax=Clostri... 119 9e-26 UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Rumin... 119 1e-25 UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter... 119 1e-25 UniRef50_B9L479 Periplasmic binding protein/LacI transcriptional... 119 1e-25 UniRef50_C0CHG6 Putative uncharacterized protein n=1 Tax=Blautia... 119 1e-25 UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-bindi... 119 1e-25 UniRef50_Q7NV24 Probable ribose ABC transporter, substrate bindi... 119 2e-25 UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothe... 119 2e-25 UniRef50_A8RJP3 Putative uncharacterized protein n=1 Tax=Clostri... 119 2e-25 UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gamma... 119 2e-25 UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasm... 118 2e-25 UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostr... 118 2e-25 UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional... 118 3e-25 UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional... 118 3e-25 UniRef50_B0PGZ6 Putative uncharacterized protein n=1 Tax=Anaerot... 118 3e-25 UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-bindi... 118 3e-25 UniRef50_B8ZUE5 Putative D-ribose-binding protein n=2 Tax=Mycoba... 118 3e-25 UniRef50_B1Y299 Periplasmic binding protein/LacI transcriptional... 118 4e-25 UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacte... 118 4e-25 UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional... 117 5e-25 UniRef50_A9HFZ1 D-ribose-binding protein n=1 Tax=Gluconacetobact... 117 5e-25 UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional... 117 7e-25 UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Ba... 116 8e-25 UniRef50_A0QZW4 D-ribose-binding periplasmic protein RbsB n=1 Ta... 116 9e-25 UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sora... 116 9e-25 UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional... 116 1e-24 UniRef50_B7GJK7 ABC-type sugar transport system, periplasmic com... 116 1e-24 UniRef50_C1TNC1 Monosaccharide ABC transporter substrate-binding... 116 1e-24 UniRef50_A1STY3 Transcriptional regulator, periplasmic binding p... 116 2e-24 UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostri... 115 2e-24 UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobact... 115 2e-24 UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Rei... 115 2e-24 UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional... 115 3e-24 UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional... 114 3e-24 UniRef50_A3CKH1 Periplasmic sugar-binding protein (Ribose porter... 114 3e-24 UniRef50_C6D2L3 Periplasmic binding protein/LacI transcriptional... 114 3e-24 UniRef50_Q029E0 Transcriptional regulator, LacI family n=1 Tax=C... 114 3e-24 UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostri... 114 5e-24 UniRef50_C4FY38 Putative uncharacterized protein n=1 Tax=Catonel... 114 5e-24 UniRef50_C3MI72 Putative ribose ABC transporter, ribose-binding ... 113 7e-24 UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyr... 113 8e-24 UniRef50_Q221W3 Periplasmic binding protein/LacI transcriptional... 113 8e-24 UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostri... 113 1e-23 UniRef50_UPI000185D1D6 putative DNA-binding response regulator/s... 112 2e-23 UniRef50_A5D1M8 ABC-type sugar transport system, periplasmic com... 112 2e-23 UniRef50_C0C300 Putative uncharacterized protein n=2 Tax=Clostri... 112 2e-23 UniRef50_A0R773 Sugar ABC transporter substrate-binding protein ... 112 2e-23 UniRef50_C0EIT8 Putative uncharacterized protein n=1 Tax=Clostri... 112 2e-23 UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostri... 112 2e-23 UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n... 112 2e-23 UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional... 112 2e-23 UniRef50_C0D949 Putative uncharacterized protein n=1 Tax=Clostri... 111 3e-23 UniRef50_A8RM26 Putative uncharacterized protein n=1 Tax=Clostri... 111 3e-23 UniRef50_Q7MCP2 ABC-type sugar transport system, periplasmic com... 111 3e-23 UniRef50_UPI00016C56B8 bifunctional carbohydrate binding and tra... 111 3e-23 UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpe... 111 3e-23 UniRef50_C6D2L0 Periplasmic binding protein/LacI transcriptional... 111 3e-23 UniRef50_A8RTB0 Putative uncharacterized protein n=1 Tax=Clostri... 111 3e-23 UniRef50_C5ESA7 Predicted protein n=2 Tax=Clostridiales bacteriu... 111 4e-23 UniRef50_Q7P137 Probable ribose ABC transporter, substrate bindi... 111 4e-23 UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional... 111 4e-23 UniRef50_A9BGQ4 Periplasmic binding protein/LacI transcriptional... 111 4e-23 UniRef50_B1YL86 Periplasmic binding protein/LacI transcriptional... 111 4e-23 UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostri... 111 5e-23 UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostri... 111 5e-23 UniRef50_B5GKD2 D-ribose ABC transporter permease protein n=1 Ta... 111 5e-23 UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-bindin... 110 6e-23 UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostri... 110 6e-23 UniRef50_C5ET05 D-ribose-binding protein n=1 Tax=Clostridiales b... 110 6e-23 UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE 110 8e-23 UniRef50_C9LY79 Periplasmic ribose-binding protein n=1 Tax=Selen... 110 8e-23 UniRef50_B9J8H1 Fructose ABC transporter n=23 Tax=Bacteria RepID... 110 8e-23 UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Glu... 110 8e-23 UniRef50_B5CR03 Putative uncharacterized protein n=1 Tax=Ruminoc... 110 9e-23 UniRef50_C0XA52 Periplasmic sugar-binding protein n=3 Tax=Lactob... 110 9e-23 UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional... 109 9e-23 UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotro... 109 1e-22 UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3... 109 1e-22 UniRef50_A1WJI7 Periplasmic binding protein/LacI transcriptional... 109 1e-22 UniRef50_B1LAH5 Periplasmic binding protein/LacI transcriptional... 109 2e-22 UniRef50_C0C2H6 Putative uncharacterized protein n=1 Tax=Clostri... 109 2e-22 UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding... 109 2e-22 UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacte... 109 2e-22 UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostri... 109 2e-22 UniRef50_A5V1R8 Periplasmic binding protein/LacI transcriptional... 109 2e-22 UniRef50_A0JW81 ABC-type sugar transport system periplasmic comp... 109 2e-22 UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-... 108 2e-22 UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional... 108 2e-22 UniRef50_C1YRI6 Monosaccharide ABC transporter substrate-binding... 108 2e-22 UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodo... 108 2e-22 UniRef50_C5EPY5 ABC-type sugar transport system n=2 Tax=Clostrid... 108 2e-22 UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional... 108 2e-22 UniRef50_B1YXY0 ABC-type sugar transport system periplasmic comp... 108 3e-22 UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional... 108 3e-22 UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clo... 108 3e-22 UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional... 108 3e-22 UniRef50_B5YAA5 ABC transporter sugar-binding protein n=2 Tax=Di... 108 3e-22 UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional... 108 3e-22 UniRef50_A8RPB7 Putative uncharacterized protein n=1 Tax=Clostri... 108 4e-22 UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding... 107 5e-22 UniRef50_C0C2X7 Putative uncharacterized protein n=1 Tax=Clostri... 107 5e-22 UniRef50_B2JP41 Periplasmic binding protein/LacI transcriptional... 107 5e-22 UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_... 107 5e-22 UniRef50_D2QME7 Two component transcriptional regulator, AraC fa... 107 6e-22 UniRef50_C5CZB4 Periplasmic binding protein/LacI transcriptional... 107 6e-22 UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette tr... 107 7e-22 UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transc... 107 7e-22 UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor h... 107 7e-22 UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI fa... 107 7e-22 UniRef50_C7IMM2 Periplasmic binding protein/LacI transcriptional... 107 7e-22 UniRef50_A1SYE6 Transcriptional regulator, periplasmic binding p... 107 8e-22 UniRef50_D1AIH6 Galactose-binding protein n=3 Tax=Bacteria RepID... 106 8e-22 UniRef50_C9Y9X5 Putative uncharacterized protein n=1 Tax=Curviba... 106 1e-21 UniRef50_UPI00019034CB methyl-accepting chemotaxis protein n=1 T... 106 1e-21 UniRef50_B9XKI8 Periplasmic binding protein/LacI transcriptional... 106 1e-21 UniRef50_C5EU51 D-galactose-binding periplasmic protein n=4 Tax=... 106 1e-21 UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding pro... 106 1e-21 >UniRef50_P02924 L-arabinose-binding periplasmic protein n=117 Tax=Gammaproteobacteria RepID=ARAF_ECOLI Length = 329 Score = 396 bits (1018), Expect = e-109, Method: Composition-based stats. Identities = 329/329 (100%), Positives = 329/329 (100%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK Sbjct: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 Query: 61 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG Sbjct: 61 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120 Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD Sbjct: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180 Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE Sbjct: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240 Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP Sbjct: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300 Query: 301 PKFTEVTDVVLITRDNFKEELEKKGLGGK 329 PKFTEVTDVVLITRDNFKEELEKKGLGGK Sbjct: 301 PKFTEVTDVVLITRDNFKEELEKKGLGGK 329 >UniRef50_C4XAG8 L-arabinose-binding periplasmic protein n=11 Tax=Enterobacteriaceae RepID=C4XAG8_KLEPN Length = 326 Score = 389 bits (999), Expect = e-107, Method: Composition-based stats. Identities = 299/326 (91%), Positives = 316/326 (96%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGF+VIK Sbjct: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFDVIK 60 Query: 61 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVI VDDQFVNAKG Sbjct: 61 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVITVDDQFVNAKG 120 Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180 KPM++VPLVMMAA++IG RQGQELYKEMQKRGWDVK++AVMAITA+ELDTARRRTTGS+D Sbjct: 121 KPMESVPLVMMAASEIGARQGQELYKEMQKRGWDVKDTAVMAITADELDTARRRTTGSID 180 Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240 ALKAAGFP+ QIY+VPTKSNDIPGAFDA NSMLVQHP+VKHWLIVGMND+TVLGGVRATE Sbjct: 181 ALKAAGFPDAQIYRVPTKSNDIPGAFDAGNSMLVQHPQVKHWLIVGMNDNTVLGGVRATE 240 Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300 GQGFKA D+IGIGINGVDAV+ELSKAQ TGFYGSLLPSPD+HGYK+SEMLYNWV K VEP Sbjct: 241 GQGFKAPDVIGIGINGVDAVNELSKAQPTGFYGSLLPSPDIHGYKTSEMLYNWVTKGVEP 300 Query: 301 PKFTEVTDVVLITRDNFKEELEKKGL 326 PKFT VTDVVLITRDNFKEEL KKGL Sbjct: 301 PKFTAVTDVVLITRDNFKEELAKKGL 326 >UniRef50_Q3JM30 L-arabinose ABC transporter, periplasmic L-arabinose-binding protein n=105 Tax=Bacteria RepID=Q3JM30_BURP1 Length = 456 Score = 315 bits (806), Expect = 2e-84, Method: Composition-based stats. Identities = 141/302 (46%), Positives = 200/302 (66%), Gaps = 2/302 (0%) Query: 26 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFV 85 +K+GF+VKQP++PWFQ EW+FA++A KD F ++KIA P GEK A+DSLAA A+G + Sbjct: 156 VKIGFVVKQPDDPWFQDEWRFAEQAAKDKHFTLVKIAAPSGEKVSTALDSLAAQKAQGVI 215 Query: 86 ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145 IC PD KLG I AKAR Y MK+++VDDQ V+ +G P+ VP + ++A +IG + G + Sbjct: 216 ICAPDVKLGPGIAAKARRYGMKLMSVDDQLVDGRGAPLADVPHMGISAYRIGRQVGDAIA 275 Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205 E ++RGW+ E V+ + ++L TAR RTTG++DALKAAGF + P + D GA Sbjct: 276 AEAKRRGWNPAEVGVLRLAYDQLPTARERTTGAVDALKAAGFAAANVVDAPEMTADTEGA 335 Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVD-AVSELS 264 F+AAN +H KHW+ G ND T +G VRA EG+G A D+I +GING A++E + Sbjct: 336 FNAANIAFTKHRNFKHWVAFGSNDDTTVGAVRAGEGRGIGADDMIAVGINGSQVALNEFA 395 Query: 265 KAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKK 324 K + TGF+GS+L +P +HGY +S +Y+W+ ++ PP +T LITR N K + Sbjct: 396 KPKPTGFFGSILLNPRLHGYDTSVNMYDWITQNRAPPPVV-LTSGTLITRANEKTARAQL 454 Query: 325 GL 326 GL Sbjct: 455 GL 456 >UniRef50_Q2T4S7 L-arabinose ABC transporter, periplasmic L-arabinose-binding protein n=33 Tax=Proteobacteria RepID=Q2T4S7_BURTA Length = 340 Score = 296 bits (757), Expect = 8e-79, Method: Composition-based stats. Identities = 147/324 (45%), Positives = 206/324 (63%), Gaps = 4/324 (1%) Query: 6 KALAAIGLAAVMSQSAMAEN--LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV 63 A AA+ +A + +A + LK+GFLVK PE+ WF E K A G+ GF V+ I Sbjct: 18 AAFAALVIAPLAMPAATRADTPLKIGFLVKMPEQAWFINEQKAATALGQKEGFSVVNIGT 77 Query: 64 PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPM 123 PDGEK L AID+L + GA+GFVIC PD +LG AI A+A+ YDMK + VDDQ V++ GKP+ Sbjct: 78 PDGEKVLAAIDNLGSQGAQGFVICAPDVRLGPAIAARAKRYDMKFVTVDDQLVDSSGKPL 137 Query: 124 DTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALK 183 VP + M+ATKIG + GQ + EM+KRGW +E + +T EL TA+ RT G+ AL Sbjct: 138 ANVPHLGMSATKIGNQVGQAIADEMKKRGWKPEEVGALRVTNYELPTAKLRTDGATQALL 197 Query: 184 AAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQG 243 A+GF ++ I+ P K+ D G F AA +L +HP VK W+I +N+ TVLG VRATE Sbjct: 198 ASGFKKENIFDAPQKTTDDEGGFSAAAPVLARHPNVKKWVIFALNEETVLGAVRATEQLH 257 Query: 244 FKAADIIGIGINGV-DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302 AAD+IG+GING +A +E K + TGF+G++ S HG +S++ L +W+ PP Sbjct: 258 IPAADVIGVGINGAGEAFAEFQKKEPTGFFGTIAVSSTNHGKQSAQNLVDWIRSGKAPPA 317 Query: 303 FTEVTDVVLITRDNFKEELEKKGL 326 T+ T L+TR+N++ + G+ Sbjct: 318 DTQ-TSGKLMTRENWQAVRAELGI 340 >UniRef50_Q987E6 L-arabinose-binding protein n=1 Tax=Mesorhizobium loti RepID=Q987E6_RHILO Length = 327 Score = 256 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 107/329 (32%), Positives = 154/329 (46%), Gaps = 10/329 (3%) Query: 1 MHKFTKALA--AIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV 58 M TKALA AI A +M+ +A A+++K+G++ K E PWF E A KA + G Sbjct: 1 MKTTTKALATVAILAAGLMAGAASADDIKIGYINKMGEHPWFVAEVGGAKKAAEAAGATF 60 Query: 59 IKIAVP-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117 + V D T+ D++ G KG I PD LG I KA+ + ++AVDD Sbjct: 61 VSQDVQFDSNLTITTFDTMVGDGVKGIAIVVPDKALGPVIAEKAKAAKIPLVAVDDDIYY 120 Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177 G VP V M A IG R G+EL K + GW KE + +I + DT +R G Sbjct: 121 QDGT---QVPYVGMNAYNIGARVGEELAKLYKADGWAGKEVRIASIEDRKADTCMQRNKG 177 Query: 178 SMDALKAA--GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG 235 + +A A F I +VP N + A D + L +P V +W+ ND VLG Sbjct: 178 AEEAFLKAVPDFKPANILRVPY-DNTMVNAIDVMTTTLTANPGVTNWIFYSCNDDGVLGA 236 Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295 RA E G+ A +GIGI+G A + + F G++ + HG + ++L + Sbjct: 237 ARALENAGYAADQGMGIGIDGSRACEAFGSGKPSAFRGTMWLNSANHGALAVKILLASIK 296 Query: 296 KDVEPPKFTEVTDVVLITRDNFKEELEKK 324 + P TD IT NF + + K Sbjct: 297 DGTKLP-VQSFTDPEYITAGNFASDYKAK 324 >UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-binding protein n=7 Tax=Bacteria RepID=B9KA11_THENN Length = 326 Score = 237 bits (605), Expect = 3e-61, Method: Composition-based stats. Identities = 67/302 (22%), Positives = 120/302 (39%), Gaps = 14/302 (4%) Query: 17 MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDS 75 ++Q K+ ++ PWF + A + + LG+E I + D K D+ Sbjct: 25 LAQEQQKPKGKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDA 84 Query: 76 LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135 + A+G + D A V +A+ + V VD + +NA+G V + Sbjct: 85 IIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVD-RGINARGL---AVAQIYSDNYY 140 Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANEL-DTARRRTTGSMDALKAAGFPEKQIYQ 194 G G+ K ++++ D KE + R+ G + +PE ++ Sbjct: 141 GGVLMGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQ--YPEFKMVA 198 Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254 + D A+ +L HPE+K I ND+ LG ++A E G DI G Sbjct: 199 QQSAEFDRDTAYKVTEQILQAHPEIK--AIWCGNDAMALGAMKACEAAGRT--DIYIFGF 254 Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314 +G + V K + +++ P + + E ++ + P+ VT V L+TR Sbjct: 255 DGAEDVINAIK-EGKQIVATIMQFPKLMARLAVEWADQYLRGERSFPEIVPVT-VELVTR 312 Query: 315 DN 316 +N Sbjct: 313 EN 314 >UniRef50_A6LT79 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium beijerinckii NCIMB 8052 RepID=A6LT79_CLOB8 Length = 331 Score = 235 bits (600), Expect = 1e-60, Method: Composition-based stats. Identities = 72/320 (22%), Positives = 143/320 (44%), Gaps = 12/320 (3%) Query: 5 TKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE--VIKIA 62 + A QS+ +L + + K +E WFQ E + A +G + + A Sbjct: 13 LSSFAFSCDTTTSKQSSKKSDLVIAVIYKTLDEAWFQEESEAAKNKALAMGAKDVITIDA 72 Query: 63 VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122 + + L+A+D+L G +IC PD KL + + + ++ VIA DD + +G Sbjct: 73 KMNPDVYLSALDNLITQKVDGILICVPDQKLSKITIDRCKKSNIAVIACDDPLTDDEGNY 132 Query: 123 MDTVPLVMMAATKIGERQGQELYKEM--QKRGWDVKESAVMAITANELDTARRRTTGSMD 180 + P V + + +IG + + + D S ++ ++ + + + RT G ++ Sbjct: 133 IA--PFVGIDSNQIGRDMTSLMVDYLEKNNKLSDPNSSGLLLMSMDSVSSCIPRTEGQLE 190 Query: 181 ALK--AAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238 K FP + I+Q +F +A S + + +K+W ++ N++ +G ++A Sbjct: 191 TFKDRLPSFPRENIFQAEYNGQS-EKSFYSAASTITSNKNIKNWFVMSANEAGTIGAIKA 249 Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 + G A + + +G+ G A E K + + + + +V + E++ N + Sbjct: 250 LDQSGL-AENAVAVGVGGYVAKDEFQKQNSPLIASAYISATEVGEIAAQELMENLLLNKN 308 Query: 299 EPPKFTEVTDVVLITRDNFK 318 P K+ V D V IT+DN+K Sbjct: 309 IPDKYL-VKDKV-ITKDNYK 326 >UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Proteobacteria RepID=A6VWG6_MARMS Length = 314 Score = 221 bits (563), Expect = 3e-56, Method: Composition-based stats. Identities = 68/319 (21%), Positives = 130/319 (40%), Gaps = 19/319 (5%) Query: 2 HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI 61 F K+ A L + S S +A N + + + P+F+ + AD K+LG++ + Sbjct: 4 KTFLKSCLAATLLTLASTSVLASNGLIAIITPSHDNPFFKAGAEGADAKAKELGYDTLVA 63 Query: 62 AVP-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120 + D K I++ A AK ++ D + + + + + D+ +N G Sbjct: 64 SHDGDVNKQNQLIETAIARQAKAVILDNADADASIGSLERLKKAGIPAF-LYDREINKTG 122 Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDT-ARRRTTGSM 179 + + ++ G + E + E+ G + E + E DT A+ R+ G Sbjct: 123 IAVTQI----VSNNFQGAQLAGEKFAELMGDGGEYVE-----LLGPESDTNAQVRSEGFH 173 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 D L FPE ++ + + AF S+L +P +K ++ NDS LG A Sbjct: 174 DILD--NFPEFKMVARQSANWSQTEAFSRMESILQANPNIKG--VITGNDSMALGAEAAL 229 Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 + G K D+ +G +G+D V + S + + +++ + +E ++ Sbjct: 230 QAAGRK--DVFIVGFDGLDYVRD-SIIKGSNIKATIMQPAYAQAQRVAEQADLYIRTGST 286 Query: 300 PPKFTEVTDVVLITRDNFK 318 ++ D VLI N K Sbjct: 287 GLPEKQLMDCVLIDSSNAK 305 >UniRef50_B0P682 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P682_9FIRM Length = 361 Score = 215 bits (548), Expect = 1e-54, Method: Composition-based stats. Identities = 69/289 (23%), Positives = 123/289 (42%), Gaps = 8/289 (2%) Query: 19 QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKT-LNAIDSLA 77 S + + + K WF E + K +D G+ + T ++ ++++ Sbjct: 54 DSVSTGDKTIVGIYKMGTATWFIQEGAASQKVVEDAGYTWKFMDCNQNAATYMDLLNTVI 113 Query: 78 ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137 A G ++C PD L V + VIAVDD G + P V + IG Sbjct: 114 ADKVDGVLVCLPDQNLSQTTVDMLTEAGIPVIAVDDALETEDGTKLA--PWVGIDGFSIG 171 Query: 138 ERQGQELYKEMQKRGWDVKES-AVMAITANELDTARRRTTGSMDALKAA--GFPEKQIYQ 194 + G+ +++ ES ++ +TA+ + + RT G + AL FPE +I++ Sbjct: 172 KAAGEWGVNYIKENNLADDESFGILLMTADTVSSCVPRTEGELAALSEGLPDFPESRIFR 231 Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254 ++ G AAN+++ HPE+K WL++G++D + G RA E G A D + +G+ Sbjct: 232 ADCDTSAEDGN-QAANAVITGHPEIKKWLVLGVSDESSQGAARAIESAGLGA-DSMVMGL 289 Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKF 303 G E + + + DV G + EM+ + P + Sbjct: 290 GGYLCPDEFENPDSCFRAAAYFSARDVGGTAAQEMVDHLENGTEIPETY 338 >UniRef50_C7Q3D4 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinomycetales RepID=C7Q3D4_CATAD Length = 347 Score = 214 bits (544), Expect = 4e-54, Method: Composition-based stats. Identities = 69/303 (22%), Positives = 129/303 (42%), Gaps = 8/303 (2%) Query: 24 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV-PDGEKTLNAIDSLAASGAK 82 + L +L KQ ++ +F E A LG + + + D +T++ + + A + Sbjct: 42 GKITLTYLQKQGDQQYFIDEADGAKAKAAQLGIGLTVVNLGDDANQTVSDVQAAVAQKSS 101 Query: 83 GFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDT-----VPLVMMAATKIG 137 G +I PDP +G +V A+ + ++ DDQ P VP V + T++G Sbjct: 102 GLIIVPPDPAVGPQVVQLAKDAGIPLLTSDDQVCTNGPDPASCATANLVPRVGFSGTQMG 161 Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT 197 G++ + K GW+ ++ ++ ++ R + + A Q V T Sbjct: 162 TDVGKKAAELFVKAGWNAADTRTISAWKQDVTVCTDRVKAAKTSFAAGAGAAVQDIDVAT 221 Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV 257 N GA D + + +P VKHW++ G ND V GGV A + G A ++IG+G+ Sbjct: 222 -DNTPTGAQDKVAATITANPGVKHWVLWGCNDENVQGGVTALQNAGVSADNVIGVGLGAY 280 Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317 A + +Q TG +L S G + + +Y+ + P+ + ++ + Sbjct: 281 LACKDWGSSQPTGMKAALYISGKNIGALAVQTMYDKLKNGKAFPQEADA-PTTMVDATTW 339 Query: 318 KEE 320 + Sbjct: 340 QSA 342 >UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional regulator n=23 Tax=Bacteria RepID=C6B4I0_RHILS Length = 313 Score = 203 bits (515), Expect = 9e-51, Method: Composition-based stats. Identities = 64/292 (21%), Positives = 123/292 (42%), Gaps = 20/292 (6%) Query: 28 LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPD-GEKTLNAIDSLAASGAKGFVI 86 + + + P+F+ E A+ K+LG+E + + D K ID+ GAK ++ Sbjct: 30 IAIITPAHDNPFFKAEAVGAEAKAKELGYETLLMTHDDDANKQSEMIDTAIGRGAKAIIL 89 Query: 87 CTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYK 146 A V KA+ + +D + +NA G + + ++G QE K Sbjct: 90 DNAGADASVAAVKKAKDAGIPSFLID-REINATGVAVAQIVSNNYQGAQLG---AQEFVK 145 Query: 147 EMQKRGWDVKESAVMAITANELDT-ARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205 M ++G V+ + E DT A R+ G D + +P+ + + + A Sbjct: 146 LMGEKGNYVE------LVGKESDTNAGIRSQGYHDVID--DYPDLKSVAKQSANWSQTEA 197 Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSK 265 + ++L +P++K ++ ND+ +G + A + G K D+I +G +G + V + K Sbjct: 198 YSKMETILQANPDIKG--VISGNDTMAMGAIAALQAAGRK--DVIVVGFDGSNDVRDSIK 253 Query: 266 AQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317 + G ++L + E ++ P + ++ D VLI DN Sbjct: 254 --SGGIKATVLQPAYAQAQLAVEQADAYIKNKTTPKEEKQLMDCVLINADNA 303 >UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HJG2_ARTCA Length = 319 Score = 196 bits (499), Expect = 7e-49, Method: Composition-based stats. Identities = 85/319 (26%), Positives = 131/319 (41%), Gaps = 27/319 (8%) Query: 8 LAAIGLAAVMS----QSAMAENL-KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKI 61 LAA+ LAA S +A + + K+G +V+ P+F K A +A +G + Sbjct: 17 LAALSLAACSSGDTQPAAKPKKIEKIGLMVQDMSNPFFSAMDKGAKEAAASIGATANTQD 76 Query: 62 AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121 A D ID+ G VI D + +A+ + VIAVD +A Sbjct: 77 AQLDLANQNTQIDTFIQQGVNLIVISAVDENGIQPAIERAKQAGIIVIAVDTPAKSADAV 136 Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181 VM A + GE+ Q L+++M +G V+ + L T R R TG + Sbjct: 137 -------VMTDAVQAGEKSCQYLFEQMGGKGN------VLLVDGTPLQTIRDRITGCNNV 183 Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241 +K FP ++ ND ML P+V+ I GMND + LG V A + Sbjct: 184 VKK--FPGIKVVGQQASKNDRASGLAVTTDMLTATPDVQG--IFGMNDPSALGAVLAVQQ 239 Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301 KA + G++G K + F G+ +P K+ E+ N + D +PP Sbjct: 240 A-HKAGTVKVTGVDGSPEAVAELKQSGSPFMGTATQNPAEMVRKAVEVAQNII--DNKPP 296 Query: 302 KFTEV-TDVVLITRDNFKE 319 T + L+TRD + Sbjct: 297 AETTILIPSELVTRDTVSQ 315 >UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LH93_9FIRM Length = 362 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 62/321 (19%), Positives = 117/321 (36%), Gaps = 25/321 (7%) Query: 15 AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTLN 71 A + + + + +VK P+ KA +D+GFE + ++ E + Sbjct: 48 AATTDVKVNGDYTIAMIVKNNTNPFMNGVLNGFSKAAEDIGFEAMLLSPQTADSNEDQVR 107 Query: 72 AIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMM 131 ++ + SG I D + KA + V+ +G +T + Sbjct: 108 LVEDMIQSGVDAICIHPVDSNGIVPALEKAWDAGIPVLV--------QGTQANTDKIYGW 159 Query: 132 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ 191 TK + L E D K + V + A + + +P+ Sbjct: 160 YGTKYADEA--TLIAEYLAEKLDYKGNVVYITGPQQAQNAIDEINATHAVFEK--YPDLN 215 Query: 192 IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA-DII 250 + + + + + +++ ++ E ++G ND +G + A E G+K + Sbjct: 216 LIEEQPGNFNRATSMSVMENLIQKYSEDDIDWVIGGNDECAMGAIAAMENAGWKLGFEDG 275 Query: 251 GIGINGVDAVSELSKAQATG-FYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK------F 303 GIG++G+D + S A G S+ P P GY + L N++ P+ F Sbjct: 276 GIGVSGIDCNKDASYAMQEGTLTVSVNPDPVSLGYIGAAFLVNYLNDGDLFPEYVAWPDF 335 Query: 304 TEVTDVVLITR--DNFKEELE 322 DVV+ DN+ E L Sbjct: 336 QTADDVVIDASNIDNYIENLA 356 >UniRef50_B8D164 ABC-type sugar transport system, periplasmic component n=6 Tax=Bacteria RepID=B8D164_HALOH Length = 308 Score = 192 bits (488), Expect = 1e-47, Method: Composition-based stats. Identities = 66/287 (22%), Positives = 116/287 (40%), Gaps = 19/287 (6%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSL 76 SQ A+A+++ +G + + P++ + +KA D G E+I IA D K ++ ++ Sbjct: 21 SQFALADDITIGASLLTQQHPFYVQLKQAMEKAADDNGVELIVSIANQDLNKQISDVEDF 80 Query: 77 AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136 G V+ D K + KA+ + VI VD ++A+G +D V Sbjct: 81 IVRGVDAIVLSPVDSKGVVGAIIKAKRAGIPVITVD---ISAEGVEVDA--HVATDNYYG 135 Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196 G G+ + K + +G V I + + R R G +A+ +P +I + Sbjct: 136 GRIAGETMAKVLNGKGQ------VAIIDYPVVQSVRDRVAGFKEAVSK--YPGIEIVAIQ 187 Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256 P A + A ++L HPEV I G D L V A + G + D+ IG +G Sbjct: 188 PG-ITRPEALNTAQNILQAHPEVDG--IFGFGDDAALASVVAVKSAGME-DDVKVIGFDG 243 Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKF 303 ++ K + + F + P G E + + + Sbjct: 244 MEEARNAVKKEES-FVAVVCQYPGEMGRLGLETALRVIKGEKVEKEI 289 >UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZRB9_9FIRM Length = 333 Score = 187 bits (475), Expect = 4e-46, Method: Composition-based stats. Identities = 73/323 (22%), Positives = 132/323 (40%), Gaps = 25/323 (7%) Query: 2 HKFTKALAAIGLAAVMSQSAMAEN---------LKLGFLVKQPEEPWFQTEWKFADKAGK 52 + + L+ + +M Q A+A N L + + + +P+ +KA K Sbjct: 3 KRMSVVLSMALVMGIMGQCAIAVNAASKTDDDTLNITLINQGSGQPYIAAYKNCFEKAEK 62 Query: 53 DLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAV 111 DL +V + D + NAI + +SGA G VI DP V +A ++V A+ Sbjct: 63 DLNIKVNLVDGGWDANQQANAIQNAISSGADGIVISPVDPSAVCTYVDEALDAGIEVCAL 122 Query: 112 DDQFVNAKGK---PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANEL 168 Q + +TV LV T++G R ++ E R + A++ T Sbjct: 123 TTQIGTGDAEDPVYPETVGLVGHIETEVG-RTAMDIAAEALDRSGKI---AIIEGTPGMS 178 Query: 169 DTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMN 228 DT R G + + +P+ ++ + A+ A +++ +PEV+ L++ + Sbjct: 179 DTEG-RKKGIDE--ENKEYPDIEVVSRVCGEWVVDKAYTAMQNIIQSNPEVE--LVICHS 233 Query: 229 DSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSE 288 D+ +G +A E + +GI G +L K YG+++ P+ Y + E Sbjct: 234 DNMAVGAAKALEDADMT-DKVKIVGIGGSKDALDLIKK--GEIYGTIMYVPETEAYTALE 290 Query: 289 MLYNWVAKDVEPPKFTEVTDVVL 311 V + E F V D+ L Sbjct: 291 ATAKVVRGEAEKETFYNVQDLPL 313 >UniRef50_B2JTD1 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Burkholderia phymatum STM815 RepID=B2JTD1_BURP8 Length = 322 Score = 186 bits (472), Expect = 9e-46, Method: Composition-based stats. Identities = 78/329 (23%), Positives = 121/329 (36%), Gaps = 22/329 (6%) Query: 1 MHKFTKALAAIGLA---AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE 57 M K K L IGLA A M+ A A+ + LG++ + P+ + + A K G + Sbjct: 1 MKKCFKKLGLIGLAGAMAFMTDVAAAKEITLGYVAAGMQYPFNVAAARGFEAAAKAAGVK 60 Query: 58 VIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116 I A EK NA+D L A G + D + + V +A +++ +AV Q Sbjct: 61 TIVLDAKTSVEKQGNAVDDLIAQKVDGIAVLPIDAVVAQSWVERATSHNIPFVAVATQIG 120 Query: 117 NAKGKPMDTV-----PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTA 171 + + ++ V LV +G Q K + K D + A T Sbjct: 121 DPQKHAINDVYPKLTALVASDEVHVGTDAAQIAAKLLPK---DRTAKIAIVEGAPGYPTV 177 Query: 172 RRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDST 231 + T G + L AG QI ++LV HP+V LI D Sbjct: 178 WQVTKGFKEGLDKAGVKY-QIVASQPTDWTPEKGESVCQNILVAHPDVD--LIFNQADDM 234 Query: 232 VLGGVRATEGQGFKAADIIGIGIN-GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEML 290 V+G RA G A + G G++AV + G++ P G ++ + L Sbjct: 235 VIGCARAVRAAGSHAKLVSRGGSKLGINAV------KVGDVDGTVCIQPGKMGERAFKAL 288 Query: 291 YNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 Y V P D +T+ Sbjct: 289 YAAVTDPNAPKAKFIDVDTPQVTKATLST 317 >UniRef50_A1WNV9 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Proteobacteria RepID=A1WNV9_VEREI Length = 374 Score = 183 bits (464), Expect = 8e-45, Method: Composition-based stats. Identities = 69/323 (21%), Positives = 135/323 (41%), Gaps = 21/323 (6%) Query: 8 LAAIGLAAVMSQSAMAENL--KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVP 64 +AA+ LAA + A A N+ K+G++ W+Q K GKDLG EV ++ A Sbjct: 40 VAAVTLAATFAAPAQARNMPRKIGYVTNYATHEWYQNVIKGMKAHGKDLGIEVEVQDANL 99 Query: 65 DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124 D K + A + A G +I + + ++ KA+ ++ V+ +G P+ Sbjct: 100 DIAKQVAAAEDFIAKGVDVLIITPVNEEGVVPLLRKAKAANIPVVL--------EGNPVK 151 Query: 125 -TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALK 183 +V + G G E K +K+ + VM + L R+ G MD ++ Sbjct: 152 GMTTMVAICDYDTGYFSGIEAGKYAKKKLGGTAK--VMNVGLPLLSATVLRSKGFMDGIR 209 Query: 184 AAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQG 243 P + + A + +++ L ++ ++ +I G+NDS+ LGG++A + G Sbjct: 210 TV-IPGATMVHDLDGGGNPDRALEVSSAALAKNADIN--IIYGINDSSSLGGLQAWKAAG 266 Query: 244 FKAADIIGIGINGV-DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302 +++ +G G A + + + + + P+ GY + + ++ P Sbjct: 267 KSQDNLLTVGTGGEGLAFINAIEKEPSYRIEAAM-FPEKEGYTAIDAAVKLFNQEKVPQH 325 Query: 303 FTEVTDVVLITRDNFKEELEKKG 325 T + D++K+ G Sbjct: 326 IVSPTAP--MNGDDWKKYYSYDG 346 >UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 Tax=Proteobacteria RepID=A4TQ38_YERPP Length = 313 Score = 182 bits (461), Expect = 2e-44, Method: Composition-based stats. Identities = 55/319 (17%), Positives = 118/319 (36%), Gaps = 19/319 (5%) Query: 2 HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI 61 + K+ L ++ + A N + + + P+F+ E + A +LG+ + Sbjct: 3 NTLLKSCLTAALISMAGVAGAASNGLIAIITPSHDNPFFKAEAEGAKAKATELGYTTLVA 62 Query: 62 AV-PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120 + D K I++ A AK ++ + KA+ + +D + +N G Sbjct: 63 SHDDDVNKQNQLIETAIARKAKAIILDNAGSDATIGPLKKAKAAGIPAFLID-REINETG 121 Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDT-ARRRTTGSM 179 + + ++G ++ M +G + + E DT A R+ G Sbjct: 122 IAVSQIVSNNYQGAQLG---AEKFVTLMGGKGKY------IELLGRESDTNAHVRSQGYH 172 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 D + + ++ T + AF+ S+L +P++ ++ ND+ LG A Sbjct: 173 DVIDEHS--DMKMVAQQTANWSQTEAFNRMESILQANPDITG--VISGNDTMALGAEAAL 228 Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 + G D++ +G +G D V + ++L + ++ Sbjct: 229 KAAGRN--DVVVVGFDGSDYVRDSIINNG-NIKATVLQPGWAQAQMAVVQADQYLKTGKT 285 Query: 300 PPKFTEVTDVVLITRDNFK 318 + ++ D VLI +N K Sbjct: 286 GLEEKQLMDCVLIDENNAK 304 >UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter sp. FB24 RepID=A0JVZ4_ARTS2 Length = 318 Score = 177 bits (449), Expect = 4e-43, Method: Composition-based stats. Identities = 68/315 (21%), Positives = 121/315 (38%), Gaps = 25/315 (7%) Query: 8 LAAIGLAAVMSQSAMAEN--LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVP 64 +IGL + S A + +K+G V P+FQ E K A+ GK +G EV+ ++A Sbjct: 21 FGSIGLTGCATASGAAGDRPMKIGVTVANSTNPFFQQESKTAESYGKSVGAEVLSQVANE 80 Query: 65 DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124 D + N ID +G K VI D V +A + VI VD+Q NA Sbjct: 81 DVQTQSNQIDQFITAGVKFIVIDAADTDGVGPAVKRAVSAGIPVIGVDNQSKNATVN--- 137 Query: 125 TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA 184 + + GE + L ++ +G + + + R TG L Sbjct: 138 ----ITTDNKQAGEISCRSLADKLGGKGK------IAILNGTPVSAVDDRVTGCKGIL-- 185 Query: 185 AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF 244 +P+ +I N A A +L +P++ + +ND + +G A E +G Sbjct: 186 GQYPDIKIVADQRGENSRDSALPIATDILTANPDLDGF--FAINDPSAVGVQLAAEQKG- 242 Query: 245 KAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFT 304 A ++ ++G + ++ A + P ++ + L + EP + Sbjct: 243 --ASVVITSVDGASSATDAI-AAGGLITATAAQDPAALMRQAID-LGISIVNGKEPDQKV 298 Query: 305 EVTDVVLITRDNFKE 319 + L+ N + Sbjct: 299 ILVPTELVDASNVAK 313 >UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRM5_ALIAD Length = 321 Score = 162 bits (410), Expect = 1e-38, Method: Composition-based stats. Identities = 59/288 (20%), Positives = 108/288 (37%), Gaps = 21/288 (7%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA-VPDGEKTLNAIDSL 76 + +A + +KLGF V P+F + K LG +V + D LN ++ L Sbjct: 37 TGTASTKPIKLGFAVSTLNNPFFVAMSNGVQEEAKKLGVQVTILNGNNDPATQLNQVEDL 96 Query: 77 AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136 ++ D + S V +A + VI +D + + + + Sbjct: 97 IQQHVNAIILNPTDSQSLSTAVEQANRAHIPVITLDRSVTKG-----NVACFIASNSVEA 151 Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196 G+ EL K + +G V+ V+ R G + + A P ++ Sbjct: 152 GKMAADELIKALGGKGQVVELQGVI-----GTSAEADREKGFDEEIGKA--PGIRVVARQ 204 Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256 T + D A + ++L HP ++ + ND LG ++A + G +I +GI+G Sbjct: 205 TANFDRSQALNVMQNILQAHPNIQG--VFAQNDEMALGALKAIQEAGKH--NIKIVGIDG 260 Query: 257 -VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKF 303 +AV+++ K Y + P G E V + P + Sbjct: 261 EKEAVNDVHKG---LLYADIAQQPVQEGILGVEYAVKLVEGEKVPKQV 305 >UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n=10 Tax=Clostridium RepID=Q0SSJ2_CLOPS Length = 301 Score = 160 bits (404), Expect = 6e-38, Method: Composition-based stats. Identities = 50/303 (16%), Positives = 97/303 (32%), Gaps = 17/303 (5%) Query: 2 HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIK 60 F+ L + L K+G ++ P+F A+K + LG++ V+ Sbjct: 6 KIFSVGLMLMMLMTSFIGCGRDNKPKIGMVLSTLNNPFFVNMKDGAEKEAEKLGYDLVVL 65 Query: 61 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120 + D K ++ L G +I D V A ++ VI +D Q Sbjct: 66 DSQNDPAKERANVEDLIQLGVIALLINPTDSDAVVKTVEVANKSNIPVITLDRQ-----A 120 Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180 + K GE + + + + + + I R R G + Sbjct: 121 NGGKITSHIASDNIKGGEMAAEYVLDKFKDEKGPINVVEIQGI--PGASATRDRGEGFHN 178 Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240 + + + D +++ +P ++ ++ ND LG V+A + Sbjct: 179 IMDKND--KFNFISIQAADFDRQKGLQVMENIIQANPNIQ--VVFAHNDEMALGAVKAIK 234 Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300 G + + IG +G D + A + PD+ G E+ + Sbjct: 235 ASGI---NALVIGFDGNDDAKDSIDANE--MTAIIAQQPDLIGALGVELANKIYKGESIK 289 Query: 301 PKF 303 K Sbjct: 290 NKI 292 >UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=C5VU40_CLOBO Length = 307 Score = 156 bits (394), Expect = 1e-36, Method: Composition-based stats. Identities = 52/298 (17%), Positives = 101/298 (33%), Gaps = 20/298 (6%) Query: 4 FTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIA 62 L +G ++ A K+G +V P+F + + A+K K+LG+E ++ + Sbjct: 12 CASILLVLGFVGCSNKHTQAREKKIGMVVSTLNNPFFVSLKEGAEKKSKELGYELLVLDS 71 Query: 63 VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122 D K + I+ L G ++ D V A ++ VI VD Q Sbjct: 72 QNDPAKERSNIEDLIQGGISVLIVNPTDSDAVINSVQVANKANIPVITVDRQ-----ANG 126 Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITA-NELDTARRRTTGSMDA 181 + V + K GE + E++ + K+ V+ + R R G + Sbjct: 127 GEVVSHIASDNIKGGELASSFIIDELKNK----KDIKVVELQGIPGASATRERGKGFHNI 182 Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241 + ++ + D +++ + + ND LG +A + Sbjct: 183 IDKKS--NLKLISSQAANFDRAQGLSVMENIIQAQSDFD--AVFAHNDEMALGAAKALKT 238 Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 K II +G +G + + + ++ P + G S E Sbjct: 239 ANKK---IIVVGFDGDEDAKTAI--EKSEISATVAQQPALMGSTSIETAVKISNGQNI 291 >UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Firmicutes RepID=C7REM6_ANAPD Length = 316 Score = 156 bits (393), Expect = 1e-36, Method: Composition-based stats. Identities = 50/288 (17%), Positives = 101/288 (35%), Gaps = 22/288 (7%) Query: 17 MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDS 75 S++ ++K+G + P+F + + ++A E VI A D N ++ Sbjct: 41 ASETKTDGDMKIGVSLSTLNNPFFVSIREGVEEAAGKENVETVITDAQNDSSTQNNQVED 100 Query: 76 LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135 L G VI D + V KA ++ VI VD + V + + Sbjct: 101 LITQGVDLIVINPVDSTAIATSVEKANEANIPVICVDR-----GSDQGELVSFIASNNVE 155 Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195 G+ G+ + +++ + ++ + + R R G +A + + Sbjct: 156 GGKLAGEYILEKVGENAEVIQLEGI-----PGASSTRERGEGFEEATNG----KINLLAS 206 Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255 T + D ++L HP+VK + ND LG A + G D+ +G + Sbjct: 207 QTANFDRAEGMTVMENLLQAHPDVK--AVFCQNDEMALGASEAIKASG---KDVTIVGFD 261 Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKF 303 G + + + ++ P G + E ++ + Sbjct: 262 GNE--DAIKAVEEGNLSATVAQKPKEMGKLAIETAIKYLKGEEVEETV 307 >UniRef50_B5XZZ5 Sugar ABC transporter, periplasmic sugar-binding protein n=7 Tax=Enterobacteriaceae RepID=B5XZZ5_KLEP3 Length = 311 Score = 153 bits (387), Expect = 7e-36, Method: Composition-based stats. Identities = 56/302 (18%), Positives = 118/302 (39%), Gaps = 22/302 (7%) Query: 19 QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV-PDGEKTLNAIDSLA 77 + AE + +V + P++ +E K A + + LG++ ++ D +K ID+ Sbjct: 19 AAHAAEKGTIMIMVNSLDNPYYASEAKGASEKAQALGYKTTVLSHGEDVKKQNELIDTAI 78 Query: 78 ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPL--VMMAATK 135 +G ++ D A + KA+ + V+ ++ + P+D V L + + Sbjct: 79 GKKVQGIILDNADSTASVAAIEKAKKAGIPVVLINREI------PVDDVALEQITHNNFQ 132 Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195 G ++M ++G + + +A R+ + +P+ Sbjct: 133 AGSEVANVFVEKMAEKGKYAELTCNLADNN-----CVTRSKSFHQVIDQ--YPDMVSVAK 185 Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255 + +S+L HP+VK ++ N LG + A + D+I +GI+ Sbjct: 186 QDAKGTLIDGKRIMDSILQAHPDVKG--VICGNGPVALGAIAALKAANRS--DVIVVGID 241 Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315 G + + KA +++ + L N++ K +P K + +LIT+D Sbjct: 242 GSNDERDAVKA--GTLQATVMLQAQAIAAQGVTDLDNYLQKGEKPAKQRVMFRGILITQD 299 Query: 316 NF 317 N Sbjct: 300 NA 301 >UniRef50_C6C3I7 Periplasmic binding protein/LacI transcriptional regulator n=6 Tax=Proteobacteria RepID=C6C3I7_DICDC Length = 311 Score = 153 bits (386), Expect = 9e-36, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 127/322 (39%), Gaps = 22/322 (6%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 M + L A +A+ + AE + LV + P++ +E K ADK ++LG++ Sbjct: 1 MKLRSMLLTAAITSALSLTAHAAEKGTIMILVNSLDNPYYASEAKGADKKAQELGYKTTV 60 Query: 61 IAV-PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 ++ D +K ID+ +G V+ D A + KA+ + V+ ++ + Sbjct: 61 LSHGEDVKKQSELIDAAIGKKVQGIVLDNADSTASVAAIKKAKAAGIPVVLINREI---- 116 Query: 120 GKPMDTVPLV--MMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177 P+D V LV + G ++M ++G + + +A R+ Sbjct: 117 --PVDDVALVQITHNNFQAGSDVANVFVEKMGEKGKYAELTCSLADNN-----CVTRSKS 169 Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237 L +P + +S+L HP+VK ++ N LG + Sbjct: 170 FHQVLDQ--YPGMASIARQDAKGTLIDGKRIMDSILQAHPDVKG--VICGNGPVALGAIA 225 Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 A + G D++ +GI+G + + K + +++ + L N++ K Sbjct: 226 ALKAAGRN--DVVVVGIDGSNDERDAVKEGS--LKATVMLQAQAIAAQGVTDLDNFIQKG 281 Query: 298 VEPPKFTEVTDVVLITRDNFKE 319 +P K + +LI +DN + Sbjct: 282 AKPAKQRVMFRGILIQQDNASK 303 >UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S312_9CLOT Length = 346 Score = 151 bits (382), Expect = 3e-35, Method: Composition-based stats. Identities = 57/303 (18%), Positives = 107/303 (35%), Gaps = 20/303 (6%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSL 76 S+ + +G + P+F KA + G E+ I A D + +++L Sbjct: 58 SEEGSGKKYVIGLAMNTQTNPFFVDVKDGVQKAADEHGIELYITDAQDDPTIQMKDVENL 117 Query: 77 AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136 +I T D + + + V +D + + + + A K Sbjct: 118 ITKKPDAIIIDTCDSDAIVSSIEACNEAGIPVFTMDR-----EANGGEVISHIGYDAIKS 172 Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196 G GQ L + +G V+ +M A+ R+ G + +K P+ +I Sbjct: 173 GRMAGQYLVDTLGGKGKIVEIQGIMGTN-----VAQNRSQGFNEVMK--DNPDMEIVACQ 225 Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256 D ++L +PE+ + ND +LG + A E G +I+ IG + Sbjct: 226 VADFDRAKGMSVMENILQANPEIDG--LYAANDEMLLGALEAMEAAGRT-DEIVKIGCDA 282 Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316 +D + KA ++ P G Y+++ P + D L+T+D Sbjct: 283 IDDTLDAMKA--GKVDATIAEPPFFLGKAILNTAYDYLEGKQVEP--YVILDNQLVTQDT 338 Query: 317 FKE 319 Sbjct: 339 VDS 341 >UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AQW5_SEBTE Length = 313 Score = 151 bits (380), Expect = 4e-35, Method: Composition-based stats. Identities = 53/275 (19%), Positives = 103/275 (37%), Gaps = 19/275 (6%) Query: 24 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAK 82 + +G + + P++ + +K ++ + IA D K ++ I+ Sbjct: 37 KTYTIGVSLLTQQHPFYLSLKDAIEKEAAAQNVKLNVSIANQDLNKQISDIEDFITKKVD 96 Query: 83 GFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQ 142 +I D K A V KA ++ VI VD + +D V G+ G+ Sbjct: 97 AIIISPVDSKGVLAAVKKAEAANIPVITVDVPAIG-----VDVAAHVATDNYTGGKIAGE 151 Query: 143 ELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDI 202 E+ + + +G V I +D+ +R G + + A +P+ +I + Sbjct: 152 EMARLLNGKG------EVAVIEYPTVDSVVQRIEGFKEVI--AKYPDIKIVAIQ-AGITR 202 Query: 203 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSE 262 P A AA +M+ + + I G D L V A + G K I IG +G+ + Sbjct: 203 PEALTAAQNMIQANKNLGG--IFGFGDDAALAAVAAVKSAG-KEDQIKVIGFDGMQEARD 259 Query: 263 LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 + + F + P+ G + + + + Sbjct: 260 AVTKEKS-FAAVITQYPEDMGKIAVDTTLKILKGE 293 >UniRef50_Q1M6L8 Putative substrate-binding component of ABC transporter n=1 Tax=Rhizobium leguminosarum bv. viciae 3841 RepID=Q1M6L8_RHIL3 Length = 340 Score = 149 bits (375), Expect = 2e-34, Method: Composition-based stats. Identities = 61/318 (19%), Positives = 109/318 (34%), Gaps = 16/318 (5%) Query: 5 TKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA-V 63 ++ A A + + SAMA++L G++ E P+ K ++A K+ G + + I Sbjct: 25 FRSSALTLTALLFAGSAMAKDLTFGYVPASLEYPYNVMTAKGFEEAAKEKGVKTVVIDPR 84 Query: 64 PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPM 123 EK N++D L + D + V K + ++A+ Q ++ + + Sbjct: 85 GSVEKQGNSLDDLLSQKVDAIGFLPLDSVVAEGFVDKVSDAKVPIVAIALQVGDSAKRQL 144 Query: 124 DT-----VPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 LV + G G+ + K + + + T G Sbjct: 145 KDPYPGLSALVATDNYQSGVVAGEMAAGVLPKDKTAKIG---IVMGDPAYTIVKLDTDGF 201 Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238 AL AG + I + + L HP++ LI D +G RA Sbjct: 202 KAALDKAG-AKYTIVAEQPTNWTPDEGEAVCQNFLTAHPDID--LIYSHADDMAIGCARA 258 Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 + K +I G + + YGS+ P + G + LY K Sbjct: 259 IDASASK-PKLIATGGGSKLGHDAILAGE---MYGSVCTRPQLLGKLMFDALYEAATKPE 314 Query: 299 EPPKFTEVTDVVLITRDN 316 P D+ IT++ Sbjct: 315 TPKGRFVTYDMPPITKET 332 >UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD Length = 304 Score = 148 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 57/305 (18%), Positives = 106/305 (34%), Gaps = 30/305 (9%) Query: 3 KFTKALAAIGLAAVMSQS--------AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL 54 ALA + L+A + ++K+G V + P+F + K K Sbjct: 6 TVFTALALLFLSACSLEPPEWAKPNKEKGTDIKIGLSVSTLKNPFFVSLKNGVVKEAKKQ 65 Query: 55 GFEVIKI-AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD 113 G EVI + A D K N ++ L G +I D S V A + V+ +D Sbjct: 66 GIEVIVVDAQDDSAKQTNDVEDLLQQGVDALLINPADSSAISTAVQSANSLGIPVVTLDR 125 Query: 114 QFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 173 N K + LV K G+ + +++ K + V R Sbjct: 126 SAENGKVE-----TLVASDNVKGGQMAADFIVEQLGKGAKVAELEGV-----PGASATRE 175 Query: 174 RTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVL 233 R +G + + T D + ++L +P+++ + ND L Sbjct: 176 RGSGFHKTADD----KLNVIAKQTADFDRTKGLNVMENLLQGNPDIQ--AVFAHNDEMAL 229 Query: 234 GGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNW 293 G + A G +I+ +G +G + + QA ++ P++ G + + + Sbjct: 230 GAIEAIRSSG---KEILVVGFDGNE--DAVKAVQAGDMSATIAQQPELIGKLAVQAARDI 284 Query: 294 VAKDV 298 + Sbjct: 285 LNGKK 289 >UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic component n=13 Tax=Bacteria RepID=Q7MEU9_VIBVY Length = 292 Score = 148 bits (372), Expect = 4e-34, Method: Composition-based stats. Identities = 58/298 (19%), Positives = 116/298 (38%), Gaps = 22/298 (7%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 M K ++A L + +S A A++ + +V P+F T A+ K+LG+ +I Sbjct: 1 MKKLATLISAALLTSTVSLGAQAQD-TMAIVVSTLNNPFFVTMKDGAETRAKELGYNLIV 59 Query: 61 -IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 + D K L+ ++ L G K +I D S + A + V+ +D Sbjct: 60 LDSQNDPSKELSNVEDLTIRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDR-----G 114 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 D V + GE G + +++ ++ ++ + AR R G M Sbjct: 115 ASRGDVVSHIASDNVVGGEMAGNFIVEKVGEKAKVIQLEGIA-----GTSAARERGEGFM 169 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 +A+K + ++ D + ++L +P+V+ + ND LG +RA Sbjct: 170 NAVKGSH---MELLASQPADFDRTKGLNVMENLLAANPDVQ--AVFAQNDEMALGALRAI 224 Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 + G +++ +G +G D ++ ++ PD+ G E + + Sbjct: 225 QASG---KEVMIVGFDGTD--DGIAAVNRGKLAATIAQQPDLIGALGIETADKVLKGE 277 >UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepID=RBSB_BACSU Length = 305 Score = 147 bits (370), Expect = 7e-34, Method: Composition-based stats. Identities = 54/282 (19%), Positives = 96/282 (34%), Gaps = 22/282 (7%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSL 76 S S + +G V P+F + K +K K G +VI A D K + ++ L Sbjct: 30 SNSGNKKEFTIGLSVSTLNNPFFVSLKKGIEKEAKKRGMKVIIVDAQNDSSKQTSDVEDL 89 Query: 77 AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136 G +I D S V A + V+ +D + LV K Sbjct: 90 IQQGVDALLINPTDSSAISTAVESANAVGVPVVTIDR-----SAEQGKVETLVASDNVKG 144 Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196 GE + ++ K + V R R +G + + Q+ Sbjct: 145 GEMAAAFIADKLGKGAKVAELEGV-----PGASATRERGSGFHNIADQ----KLQVVTKQ 195 Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256 + D ++L HP+++ + ND LG + A G DI+ IG +G Sbjct: 196 SADFDRTKGLTVMENLLQGHPDIQ--AVFAHNDEMALGALEAINSSG---KDILVIGFDG 250 Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 L+ + ++ P++ G ++E + + Sbjct: 251 NK--DALASIKDRKLSATVAQQPELIGKLATEAADDILHGKK 290 >UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium botulinum RepID=B1KZY7_CLOBM Length = 336 Score = 146 bits (369), Expect = 7e-34, Method: Composition-based stats. Identities = 60/343 (17%), Positives = 121/343 (35%), Gaps = 38/343 (11%) Query: 1 MHKFTKALAAIGLAAVMSQSAM-----------------AENLKLGFLVKQPEEPWFQTE 43 M K TK + A+ L+ ++ SA+ + + +G + +F Sbjct: 1 MKK-TKKILAVLLSTLLIGSAILTGCGSKESSVDKKDKDPKEVTVGLSLSSLSNAFFIGM 59 Query: 44 WKFADKAGKDLGFEVIKIAVP-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKAR 102 K ++G ++I+ D K L+ I+ L ++ D V KA+ Sbjct: 60 EKGVKDKTSEIGCKLIETNANGDIAKQLSDIEDLITKKVDILIVNALDADAIVPAVKKAK 119 Query: 103 GYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMA 162 ++ +I +D D + K+GE+ + + K ++ +G + + V Sbjct: 120 EANIPIIFLDR-----GANSEDMTTFLETDNVKMGEQAAELILKALKDKGLNG-GNVVEI 173 Query: 163 ITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHW 222 AR R G + + E +I + + + ++L +P++ Sbjct: 174 EGLQGTSAARDRGKGFHNVMDK--HKEVKIVAKQAGDFNQEKSMNVMQNILQANPKID-- 229 Query: 223 LIVGMNDSTVLGGVRATEGQGF-----KAADIIGIGINGVDAVSELSKAQATGFYGSLLP 277 + G ND +G +A I +GI+G++ E K S+ Sbjct: 230 AVFGHNDDCTVGAEKAIIASNRMKPAGDKEHIFVVGIDGINQAIESVKK--GNIDVSISQ 287 Query: 278 SPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320 P G ++ E+ + + T IT+DN +E Sbjct: 288 DPIGMGVQAVEVGLKAIKGEQVEKHIY--TKFFPITKDNATDE 328 >UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBL5_9BACT Length = 328 Score = 145 bits (365), Expect = 2e-33, Method: Composition-based stats. Identities = 52/310 (16%), Positives = 104/310 (33%), Gaps = 17/310 (5%) Query: 4 FTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV 63 K+ A + A +G + + P+F+ GK G++ + ++ Sbjct: 19 CNKSENASTSTDTQPPTGSASKGTIGVSLLTLDNPFFKVIGDNIVSEGKKRGYDAVVVSG 78 Query: 64 P-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122 D K N I V+ D K ++ +A + V VD + G Sbjct: 79 DKDVAKQSNQIKDFIVKKVSAIVLSPCDSKSIVPVIQEANAAGIPVFTVDIP-CHEPGVK 137 Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182 + T + G+ + + + + + G + + + ++ + R G + + Sbjct: 138 IAT--QIATDNYGGGKEAAKAMIEALGEAGGK-----IAILHFKQAESCQLRVKGFREII 190 Query: 183 K---AAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 A G + I + AA L +P++ I +ND LG A Sbjct: 191 DAHNAEGKSKVDIVAELESGGAKDQGYKAAEDTLQANPDLHG--IFAINDPAALGARAAL 248 Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 E G K ++ +G +G + K Y + PD G + + + + Sbjct: 249 EKAG-KTDQVVIVGFDGQPEGKQAIKE--GKIYADPIQFPDKMGAQIVDAIIQQSKGETL 305 Query: 300 PPKFTEVTDV 309 PP+ T + Sbjct: 306 PPQMLIPTSL 315 >UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkholderia graminis C4D1M RepID=B1G1G9_9BURK Length = 369 Score = 144 bits (364), Expect = 3e-33, Method: Composition-based stats. Identities = 63/310 (20%), Positives = 120/310 (38%), Gaps = 15/310 (4%) Query: 19 QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP-DGEKTLNAIDSLA 77 +A K+GF V +F +K K+ GF++++ D ++ +N +L Sbjct: 61 ANAAGGKTKIGFSVSTLNNAFFVGLKAGVEKGAKEQGFDLVQTNANGDAQQQVNDAINLL 120 Query: 78 ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137 + G V+ D K V KA ++ V +D K V +G Sbjct: 121 SQGVTALVLNPIDSKAIIPAVEKANAMNIPVFTLDRGSDGGK-----VTSFVASDNVALG 175 Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT 197 + + + ++ KR K + V I A R G D + A +P+ ++ Sbjct: 176 QTAAKWIADQLTKRYGSAKGNVVDLIGLVGTTAATDREKGFSDEI--AKYPDIKVVARQE 233 Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF--KAADIIGIGIN 255 + D + +A ++L ++P++ + G ND +G +A + G D I + Sbjct: 234 GAFDQEKSLNAMTNILQKYPQID--AVFGANDDNTVGAEKAIDNAGRYKPLDDKQHILVI 291 Query: 256 GVDAVSELSKAQATGFY-GSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314 G D ++ A G ++ +P KS + + ++ AK P + +LI + Sbjct: 292 GADGTAQALSAIRAGKQDATISQNPIQMAAKSLQFVADYTAKKDVPANY--AWPTLLIDK 349 Query: 315 DNFKEELEKK 324 N + KK Sbjct: 350 SNIDSDATKK 359 >UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P8T4_9FIRM Length = 333 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 48/296 (16%), Positives = 101/296 (34%), Gaps = 20/296 (6%) Query: 23 AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLAASGA 81 E + +GF ++ K + G ++I + D ++ G Sbjct: 57 REQIVVGFSNWSRSFEFYVDLEKGMQEVADAQGVKLITQDPNGDLAAQTKQVEDFITQGV 116 Query: 82 KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141 G V+C D + ++ D + T G+ Sbjct: 117 DGIVLCPIDSNAAVTEAETINQAGIPLVTTDIAVAGGD-----VASHIASDNTLGGQLAA 171 Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201 Q + +++ G V I + + R TG D + A +P+ +I V + + Sbjct: 172 QFIGEQLGGTGK------VALINNPTITSLIERETGFTDTM-AQKYPDIEIVAVQSGESK 224 Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261 ++L +P+V+ + +ND LG ++A + + DI+ +G + + Sbjct: 225 REKGLSVMENILQSNPDVQG--VFAVNDMMGLGALQAVQAA--QRDDIVIVGFDATEEAV 280 Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317 + K + + S+ +P G + E + +A + V L+T N Sbjct: 281 KYIK-EGSALKASVAQNPVELGKTTMETMLKVIAGEQVEKNIP--VPVELVTAGNA 333 >UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Proteobacteria RepID=A6WVL9_OCHA4 Length = 300 Score = 144 bits (363), Expect = 4e-33, Method: Composition-based stats. Identities = 60/302 (19%), Positives = 109/302 (36%), Gaps = 21/302 (6%) Query: 2 HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IK 60 ++ L + A+M+ +A AE +G + + P++ K + + + Sbjct: 4 KSLSRILFSGVALAMMAGAASAEG--IGASLLTQQHPFYIALADAMKKEAQAENVPLEVS 61 Query: 61 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120 IA D K L ++ G +I D K + + KA +KVI VD Sbjct: 62 IANQDLSKQLADVEDFITKGVDVIIISPVDSKGVRSAINKAEKAGIKVITVD-----VPA 116 Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180 +D V GE+ + + K + ++G V I + + R G Sbjct: 117 NNVDVTSFVGTDNFAGGEKAAELMAKTIGEKGN------VAVIDYPTVQSVVDRIEGFKK 170 Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240 + A +P+ +I + P A AA ++L +P++ I G D L A + Sbjct: 171 GI--AKYPDIKIVAIQPG-ITRPEALSAAQNILQANPDIVG--IFGFGDDAALAAASAVK 225 Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300 + + IG +G++ K G + PD G + E + + P Sbjct: 226 SAKLE-NQVKVIGFDGMEEARNAVKNDPV-MVGVIAQYPDQMGKVAVETAAKVIKGEEVP 283 Query: 301 PK 302 K Sbjct: 284 AK 285 >UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-binding protein n=31 Tax=Vibrio RepID=A5F1B8_VIBC3 Length = 294 Score = 143 bits (361), Expect = 6e-33, Method: Composition-based stats. Identities = 58/299 (19%), Positives = 115/299 (38%), Gaps = 22/299 (7%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 M K T ++A L+ +S A A++ + ++ P+F T A+ K+LG+ +I Sbjct: 3 MKKLTTLISAALLSTSVSFVAQAQD-TVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIV 61 Query: 61 -IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 + D K L+ ++ L G K +I D S + A + V+ +D Sbjct: 62 LDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDR-----G 116 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 + V + GE G + ++ ++ + AR R G M Sbjct: 117 ASRGEVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIA-----GTSAARERGEGFM 171 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 +A+K + + Q+ D + ++L +P+V+ + ND LG +RA Sbjct: 172 NAVKGS---KMQLLASQPADFDRTKGLNVMENLLAANPDVQ--AVFAQNDEMALGALRAI 226 Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 + G ++ +G +G D ++ + ++ PD+ G E + + Sbjct: 227 QASGKS---VMIVGFDGTD--DGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEK 280 >UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional regulator n=54 Tax=Bacteria RepID=Q3MB45_ANAVT Length = 343 Score = 140 bits (353), Expect = 5e-32, Method: Composition-based stats. Identities = 55/298 (18%), Positives = 110/298 (36%), Gaps = 24/298 (8%) Query: 28 LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP----DGEKTLNAIDSLAASGAKG 83 +G + P+F + A+K K +G E +++ V D + N I++ A+ Sbjct: 62 VGVTLGDLSNPFFVVMAQGAEKEAKKIGGEDVRVTVVSSGYDLNQQFNQIENFVAANTDL 121 Query: 84 FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143 +I D K V +AR VIAVD D V + GE Q Sbjct: 122 IIINAADSKGIRPAVDQARQAGKVVIAVDTAI------EADIDATVTTNNVQAGEISCQY 175 Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ-VPTKSNDI 202 + ++ +G V+ + + + +R G + L A +P+ ++ Sbjct: 176 IADRLKGKGN------VVIVNGPPVTSVIQRVDGCLKVL--AKYPDIKLLSKDQNAEGSR 227 Query: 203 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSE 262 G + +LV P++ + +ND + +G A K D +G++G E Sbjct: 228 DGGLRVMSDLLVTFPKID--AVFAINDPSGVGVDLAANQA--KRQDFFIVGVDGAPEAIE 283 Query: 263 LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320 + + + + +P + ++ + + +P + LIT++N Sbjct: 284 AIASGDSLYAATATQNPRGMTQTAIQVGNDILHGK-KPESPNILIPAKLITKENVSTS 340 >UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8RBP9_THETN Length = 339 Score = 140 bits (353), Expect = 6e-32, Method: Composition-based stats. Identities = 58/308 (18%), Positives = 111/308 (36%), Gaps = 22/308 (7%) Query: 20 SAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP----DGEKTLNAIDS 75 ++ + + + + + A+ K+LG + P D + + ++ Sbjct: 43 ASSEKKYNIVLITMDSMDEHWLAVKAGAEAKAKELGNVQLTFRAPAEKADPNEQVRMMED 102 Query: 76 LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135 A +I D + +V KA + VI +D K V V K Sbjct: 103 AINQKADAILIAPTDQTALTPVVEKAFDAGIPVILIDSPVKTDK-----YVSFVATDNIK 157 Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195 E +L + + +G + T R G D LK +P+ QI Sbjct: 158 AAEMAADKLGELLGGKGKIA-----IISAQPGSGTTIMRENGFKDRLKE-KYPDIQIITT 211 Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255 D A + A +L HP++ + G N+ + +G A + + A + +G + Sbjct: 212 QYSMGDKNRALNQALDILTAHPDLAGF--YGTNEGSTIGIAMAIKQKDL-AGKVKVVGFD 268 Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315 A K S++ +P + GYK E+ + + P + T V ++T+D Sbjct: 269 ISQATINAIKEN--YIQASMVQNPYMMGYKGVEIAVDKLQGKEVPKRVD--TGVTVMTKD 324 Query: 316 NFKEELEK 323 N E +++ Sbjct: 325 NVDEVVKE 332 >UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional regulator n=49 Tax=Proteobacteria RepID=Q1R0N3_CHRSD Length = 318 Score = 140 bits (352), Expect = 7e-32, Method: Composition-based stats. Identities = 60/318 (18%), Positives = 116/318 (36%), Gaps = 18/318 (5%) Query: 2 HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IK 60 + A A+G+ + S ++ + + +V P++ TE K A++ + LG+E + Sbjct: 6 KRLLIAALAVGVPLLASGASAQDKGLMSIIVNDTSNPYWFTEGKIAEETAEKLGYEADVS 65 Query: 61 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120 D ID+ + A+ ++ + V KA + V + + +N +G Sbjct: 66 SHKGDTNTESRQIDTAITNQAEAIILDPANADGSIGAVRKAVEAGIPVFII-NAEINQQG 124 Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180 + +G +Q + V A + A R+ G Sbjct: 125 LAEAQLVSNNAQGAALGAQQWI--------KSVGDSARYVELKGAPSDNNAATRSNGYET 176 Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240 L + +P + + D F+ SML +P++ ++ ND LG + A + Sbjct: 177 VL--SQYPGLEKVGSDVANWDRTQGFNKTQSMLQANPDIDG--VISGNDEMALGAISALK 232 Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWV-AKDVE 299 G K D++ G +G E KA ++L + + M +V + Sbjct: 233 EAG-KLDDVVVGGFDGSPDAVEAVKA--GEMDYTVLQPVAIFSEMAVRMADKYVTTGETG 289 Query: 300 PPKFTEVTDVVLITRDNF 317 ++ D LIT DN Sbjct: 290 VDGEKQLFDCFLITSDNV 307 >UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gammaproteobacteria RepID=A8GZV8_SHEPA Length = 299 Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 62/298 (20%), Positives = 115/298 (38%), Gaps = 22/298 (7%) Query: 2 HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-K 60 HK + L+A L+ S SA A++ + ++ P+F T A+ +LG+++I Sbjct: 7 HKVSVLLSAALLSVSTSFSASAQD-AIAIVLSTMNNPFFVTMKDGAEAKAAELGYKLIAL 65 Query: 61 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120 + D K L ++ L G K +I D + + A ++ V+ +D Sbjct: 66 DSQNDPSKELANVEDLTMRGVKAILINPTDALAVTNAIRTANRANIPVLTLDR-----TA 120 Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180 D V + GE G+ + +++ K ++ + AR R G + Sbjct: 121 AHGDIVSHIASDNIAGGELAGEFIAQQLGKNAKVIQLEGIA-----GTSAARERGEGFSN 175 Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240 A+ A F ++ D + +ML + +V+ + ND LG +RA E Sbjct: 176 AVTANNF---ELLSSQPADFDRSKGLNVMENMLAANGDVQ--AVFAQNDEMALGALRAIE 230 Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 G DI+ IG +G D + Q ++ P++ G + + V Sbjct: 231 AAG---KDILVIGFDGTDEGIAAVRRQQ--LSATVAQQPELLGATAIMTADRILKGQV 283 >UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH Length = 309 Score = 140 bits (352), Expect = 8e-32, Method: Composition-based stats. Identities = 51/270 (18%), Positives = 93/270 (34%), Gaps = 19/270 (7%) Query: 28 LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI-AVPDGEKTLNAIDSLAASGAKGFVI 86 +G V P+F T K A++ + G +I + A D K + +I+ L K ++ Sbjct: 42 IGLAVSTQSNPFFVTLKKGAEEEAQKQGLTLITVDAQDDPAKQIASIEDLIQKKVKVILV 101 Query: 87 CTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYK 146 D V A + V+ +D + V G+ + L + Sbjct: 102 NPTDSDAVVGAVKAANAAGIPVVTLDRSVNGGE-----VASHVASDNVAGGKMAAEYLLE 156 Query: 147 EMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAF 206 ++ +G V+ + AR R G D + A + ++ D Sbjct: 157 KIGNQGDVVELEGI-----PGASAARERGQGFHDVIDQA--KDVKVVGRQPADFDRAKGL 209 Query: 207 DAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKA 266 ++L + VK + ND LG V+A E G K D+ +G + D KA Sbjct: 210 SVMENILQANKNVKG--VFAHNDEMALGAVQALEAAGMK--DVTVVGFDATDDAVNAVKA 265 Query: 267 QATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296 ++ P + G + + + Sbjct: 266 --GKMSATVAQKPKLIGKTAVDAAKKIIDG 293 >UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Pasteurellaceae RepID=B0URJ4_HAES2 Length = 311 Score = 139 bits (351), Expect = 9e-32, Method: Composition-based stats. Identities = 61/327 (18%), Positives = 124/327 (37%), Gaps = 21/327 (6%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPW---FQTEWKFADKAGKDLGFE 57 M K A+ GL + SQ+ +A+N +G + + W Q + D+ D+ + Sbjct: 1 MKKTLLAMLCGGLL-LTSQAVIAKNYVIGAPMNSFADKWQTYLQDAVRDFDEKHDDVQIK 59 Query: 58 VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117 + + D +N + + ++ DP + I A+ + +I V+ + + Sbjct: 60 -LADSNSDPNIQVNLVQNFIDQNVDALLVVPTDPTVVKRIGVLAKKAGIPLIVVNRKPND 118 Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177 + + + V + G QG + + + + +++ + D +RT G Sbjct: 119 EHMQYVTS--FVGSDEIEGGRIQGNFIVNTLAGKNAE----SLILLGPLGQDAVTKRTQG 172 Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237 + + A ++ + A ++L + + +IV ND +G + Sbjct: 173 NEEIF--AQHKNIKVVSKQEGRWERDRGLAIAENVLAGNKGIN--VIVSNNDEMAIGAIL 228 Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 AT G K DI +G+ DA + + G ++ S GY +EM Y + Sbjct: 229 ATRKLGIKDEDITIVGL---DATPDALEYLGKGLDATVFQSAQGQGYTGAEMAYLAAKGE 285 Query: 298 VEPPKFTEVTDVVLITRDNFKEELEKK 324 P + L+T D KEE + + Sbjct: 286 KVPS--VKWVPFELVTPDK-KEEYQAR 309 >UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S41_MANSM Length = 313 Score = 138 bits (346), Expect = 3e-31, Method: Composition-based stats. Identities = 46/291 (15%), Positives = 108/291 (37%), Gaps = 16/291 (5%) Query: 10 AIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---PDG 66 + ++A+ + + A+ ++ L+K +F + + A++ K+ ++I Sbjct: 13 SALISALPALAFAADKPQIALLMKTLSNEYFISMRQGAEETAKEKNIDLIVQVAEKEDST 72 Query: 67 EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD-T 125 E+ + ++++ A ++ D KA + +I +D + + Sbjct: 73 EQLVGLVENMIAKKVDAIIVTPNDSIAFIPAFQKAEKAGIPIIDLDVRLDAKAAEAAGLK 132 Query: 126 VPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAA 185 V + G + + L + + K+G + +D +R G++ A A Sbjct: 133 FNYVGVDNFNGGYLEAKNLAEAIGKKGNVAILEGI-----PGVDNGEQRKGGALKAF--A 185 Query: 186 GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK 245 +P+ +I + + + A ++L +P + I ND+ +G V A E G Sbjct: 186 EYPDIKIVASQSANWETEQALTVTTNILTANPNING--IFAANDNMAIGAVTAVENAGL- 242 Query: 246 AADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296 A ++ G +G+ E K ++ P + E + K Sbjct: 243 AGKVLVSGYDGIPLAIEYVKQ--GKMQNTIDQLPKKQVAIAIEHALKQINK 291 >UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z758_9NEIS Length = 313 Score = 137 bits (344), Expect = 5e-31, Method: Composition-based stats. Identities = 57/318 (17%), Positives = 111/318 (34%), Gaps = 25/318 (7%) Query: 8 LAAIGLAAVMSQSAMAENLK-LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI----A 62 L A LA + + S A LK +G V P+F K A+ A K +G +K+ + Sbjct: 8 LTAAVLAGLAAPSFAARPLKSVGVAVGDLANPFFVAIGKGAEDAAKKIGGPGVKVTTVSS 67 Query: 63 VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122 D + I++ A+ ++ DP ++ KAR + V Sbjct: 68 KYDLNTQVGQIENFIANKVDVILVNASDPMGIEPVLKKARAAGI-------AVVAVDVGA 120 Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182 + VM G + + +++ RG V+ + + R G L Sbjct: 121 VGADATVMSDNAMAGAESCKFMAQQLGGRGN------VVIVNGPPVTAVSARVAGCKKVL 174 Query: 183 KAAGFPEKQIYQV-PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241 +P ++ G + ++L H ++ + +ND T +G A + Sbjct: 175 --GNYPGIKLLSDNQDAHGSRDGGMETMANLLTAHKKID--AVFAINDPTGIGAELAVKQ 230 Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301 G +I ++G + K + + F S +P + ++ Y+ + P Sbjct: 231 AGRSDVKLIA-AVDGAPDAEKALKDKKSLFAVSAAQNPYTMATMAVQIGYDILNGKR-PA 288 Query: 302 KFTEVTDVVLITRDNFKE 319 K + +T+ N Sbjct: 289 KSQVLLPTPAVTKANVAS 306 >UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKU7_MOOTA Length = 326 Score = 136 bits (341), Expect = 1e-30, Method: Composition-based stats. Identities = 54/299 (18%), Positives = 109/299 (36%), Gaps = 24/299 (8%) Query: 22 MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDSLAASG 80 + +G + E ++ K + + F+ +I A D K L + Sbjct: 50 KSGEKVIGVSLLTREHVFYNLIEKAIQEKAQGYKFKPIIMDASQDSNKQLAQVQDFITQK 109 Query: 81 AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140 V+ + V A+ + V +D + A+G D V G+ Sbjct: 110 VDAIVLAPTASAGIAPAVDLAKKAGIPVFTID---IKAEG---DVKSHVATDNYAGGKLA 163 Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSN 200 + +++ V IT +E+ + R G DAL A +P ++ V S Sbjct: 164 AKYAAEKVLNGKGK-----VAIITYSEVQSCVDREKGFKDAL--AEYPNIKVVDVENCSG 216 Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV-DA 259 A + +L++ P++ LI + D +G V + G ++ IG +G +A Sbjct: 217 SAEKAANLTQDILLKFPDLD--LIFAVGDPFAVGAVSTIKAAGR---NVKVIGFDGNPEA 271 Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318 + E+ + ++ PD G K +++ ++ PP+ + ++ N K Sbjct: 272 IQEIKNH--GLWVADVVQHPDQIGGKVIDLIADYFNGKSVPPQV--LIPPTIVDASNAK 326 >UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B7W7_CLOBO Length = 325 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 66/304 (21%), Positives = 118/304 (38%), Gaps = 22/304 (7%) Query: 27 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI---AVPDGEKTLNAIDSLAASGAKG 83 + ++K +++T A+ A K+LG +V + A D + I+ G Sbjct: 40 NVAVVLKALNSDYWKTVQAGANDAAKELGVKVQVLGPNAETDVVGQTSLIEDQIVKGVDA 99 Query: 84 FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143 V+ P KA + V+ +D K K V G+ G+ Sbjct: 100 LVVAPLQPNAAITTFDKAEKEKIPVVLIDTDANWDKKKS-----FVGTGNIAAGKLGGEY 154 Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203 + K+++K + A++ T RT G+ AL+AAG ++ ++ +++ Sbjct: 155 ISKKLKK-----GDEAIIIRGVPGDRTQDERTQGAQKALEAAG---IKVVEIQPANSERE 206 Query: 204 GAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSEL 263 A ++L HP +K + ND LG V+A + G K +II IG++G L Sbjct: 207 KAISVMENLLQTHPNIKG--VFCTNDEMALGAVKALQQAGKK--NIISIGVDGS--PDAL 260 Query: 264 SKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEK 323 + G G++ + G K E + + + T +V N +E Sbjct: 261 KSIKEGGLTGTVAQNSYDIGKKGVETAVKVLRGEKVETRIDTGTTLVDKQNVNEQEAKLN 320 Query: 324 KGLG 327 K LG Sbjct: 321 KILG 324 >UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8_STIAU Length = 331 Score = 135 bits (340), Expect = 2e-30, Method: Composition-based stats. Identities = 56/313 (17%), Positives = 115/313 (36%), Gaps = 20/313 (6%) Query: 8 LAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---P 64 +A++ A K+ ++K P+F K A +A K+LG +++ Sbjct: 31 VASVSSRTQREPDAAPNARKIALVMKTLTNPFFIEMEKGARRAQKELGIDLLVKTAAQET 90 Query: 65 DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA--KGKP 122 E+ + I+ L VI D ++ A+ +++I +D++ KG+ Sbjct: 91 SIEQQIQIIEDLIRMKFDAIVIAPGDSLRLVPVLKAAQEAGIRIINIDNRLDAEAMKGQG 150 Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182 M VP + + K + +E+ K + D +R+R G+ A Sbjct: 151 MAPVPFISVDNEKAAYESAGFIAREIHKPAQAAILEGI-----RSADNSRQRRVGAERAF 205 Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242 + P ++ + + I D + HP++ L+ ND LG ++ + Sbjct: 206 REN--PLIRLVARESANWKIDEGRDVTRRLFSDHPDIT--LLFCANDMMALGAIQFLQES 261 Query: 243 GFKAADIIGIGINGVDAVSELSKAQATGFY-GSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301 G G+ + DA+ E +A +G ++ GY+ + + + P Sbjct: 262 GR-----YGVKVAAYDALEEAKRAILSGRMEVTVNQQAAEQGYQGIILASRVLNGEAVPE 316 Query: 302 KFTEVTDVVLITR 314 T +V + Sbjct: 317 VVLVETSLVTLES 329 >UniRef50_A5FXE6 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Proteobacteria RepID=A5FXE6_ACICJ Length = 328 Score = 135 bits (339), Expect = 2e-30, Method: Composition-based stats. Identities = 53/292 (18%), Positives = 98/292 (33%), Gaps = 18/292 (6%) Query: 27 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGE-KTLNAIDSLAASGAKGFV 85 + V P+F E KFA + LG+ + + LN I + A + Sbjct: 42 TIAIFVPSLSNPFFVAEEKFAAEEATKLGYGTMVASHNGNAYTQLNLIKTAIARHVAAII 101 Query: 86 ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145 + + V A + V +D + +NAKG + + + +G E Sbjct: 102 LDNAGADSSISAVKLATKAGVPVFLID-REINAKGIAKAQIV---SNNFQGAQLEGTEFA 157 Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205 K M +G V+ + + A+ R+ G LK F ++ V T Sbjct: 158 KLMGYKGTYVELTGL-----PSDTNAKVRSQGVASVLK--HFSGMKMVAVQTADWSQSKG 210 Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSK 265 F ++L HP +K ++ ND+ +G A ++I G +G V + Sbjct: 211 FQVTQTLLEAHPHIKG--LIADNDTMAMGAEAALLAA--HKPNVIVTGFDGSPDVINSIR 266 Query: 266 AQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317 +L ++ ++ + + LIT+ N Sbjct: 267 K--GQIKADVLQPIATFSREAVIEADKYIRTGKTGKPEKQELNCTLITKANV 316 >UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S343_9CLOT Length = 373 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 46/312 (14%), Positives = 104/312 (33%), Gaps = 26/312 (8%) Query: 14 AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTL 70 A + + + K+G++ K P+ + + AGK +GF I A E+ + Sbjct: 68 AQIATSVKAGGDYKIGYIAKNTTNPYMVAQSAGVEAAGKAMGFTAITQAPTTADSVEEQV 127 Query: 71 NAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVM 130 ++++ ++ D V KA+ + V+ + DT Sbjct: 128 QLMENMITQDVDAIIVHCADSNGIMTGVRKAQDAGVLVLTI------GTPAAEDTFLRTG 181 Query: 131 MAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEK 190 + + G + + ++ +G ++ A R G L + + Sbjct: 182 VDYYESGYTMAKAVADKLGGKGK-----FIILEGPAGASNAIERLNGINTGL--SEYEGI 234 Query: 191 QIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADII 250 +I T + +++ Q+ ++ ++ ND + LG V+A D++ Sbjct: 235 EIVASQTANFKRTEGMSVTENLIQQYTDID--AVIACNDESALGAVQALTAANMS--DVL 290 Query: 251 GIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP----KFTEV 306 G +G + K + + P G+ + ++ EP F Sbjct: 291 VCGFDGSVDATNAVKE--GTMFATYNTDPYGSGFVACAYAVKYLNDKTEPEGKFIPFPTA 348 Query: 307 TDVVLITRDNFK 318 + L+ D + Sbjct: 349 ANDPLVIADTVQ 360 >UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional regulator n=37 Tax=Gammaproteobacteria RepID=C6CIQ9_DICZE Length = 312 Score = 134 bits (338), Expect = 3e-30, Method: Composition-based stats. Identities = 73/331 (22%), Positives = 127/331 (38%), Gaps = 21/331 (6%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-I 59 M K T LAA + S A A+N ++ F P+ + A KA K+LG + + Sbjct: 1 MKKIT-ILAAAMAFTMSSGLAQAQNEQIVFSTPNLAMPFEVHMQRTAVKAAKELGVNLQV 59 Query: 60 KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 + K + +++ GA+GFV+ D S V + + + V+ +D K Sbjct: 60 LDSQGSSPKQVADLENAITRGAQGFVVSPNDVNAVSGAVTEIQDAKLPVVTLDRSVKTDK 119 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 VP K G Q + ++ R + + V+ + RT G Sbjct: 120 K-----VPHFGANNYKGG----QAIGDFVKARFPNGADI-VLLTGQPGSSSNIERTQGIR 169 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 D+LKA G ++ T + S+L P+ + +I+ ND LG + A Sbjct: 170 DSLKAGGSKY-RLVADQTGNWMRSEGMRIVESVLPSLPK-RPQVILSANDDMALGAIEAL 227 Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 + QG K +++ G + V L++ + + P GY ++ + Sbjct: 228 QSQGLKPGEVMVTGFDAV--PEALARVRDGWLAATADQRP---GYAVTQAMTQLTNNIRT 282 Query: 300 PPKFTEVT-DVVLITRDNFKEELEKKGLGGK 329 T +IT+DN + E+ G GK Sbjct: 283 KSAITGADYPPTMITKDNL-NDAERIGEAGK 312 >UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridiales RepID=C6PN56_9CLOT Length = 322 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 60/299 (20%), Positives = 110/299 (36%), Gaps = 21/299 (7%) Query: 22 MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA-VPDGEKTLNAIDSLAASG 80 + K G+ P+FQ K + G ++I + D K ++ I+ + G Sbjct: 37 TKKKHKFGYTCMTMNNPFFQVLEKSIRAEVEKNGDQLITMDPAMDVSKQIDQINDMITQG 96 Query: 81 AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140 + + D + + + ++ +I D + + V G+ Sbjct: 97 VEAVFLNPVDWEGVRPGLEALKKANIPIINFDTEVKDMN----YVTAYVGSDNKNAGKVC 152 Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSN 200 G +L K G + + +++ R G A++ F I Sbjct: 153 GDDLVKRYPNGGK------IAILNCPTMNSINDRIAGFKSAIEGKNF---TIVAEQDGKG 203 Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260 D+ + A+ +L H ++ I+G ND T LG + A + K + I+ G++G Sbjct: 204 DLQTSMKLADDILQSHSDI--VAIMGGNDPTALGALAACKSA--KQSKILIYGVDGSPDA 259 Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 + A F G+ SP G KS+E+ Y + K K T V LI +DN + Sbjct: 260 KK-EIASGGQFVGTGAQSPKQIGVKSAELGYKVLNKQNV-EKKTPVQTF-LINKDNVSK 315 >UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protein n=16 Tax=Streptococcaceae RepID=D2BKS5_LACLK Length = 324 Score = 134 bits (337), Expect = 4e-30, Method: Composition-based stats. Identities = 54/299 (18%), Positives = 95/299 (31%), Gaps = 23/299 (7%) Query: 22 MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDSLAASG 80 L +G + P+F + K+ + + A D LN + + + Sbjct: 45 KPNELNIGVSISTTNNPYFVSMNNAIKSMAKEKNTKLTVSDAQNDSATQLNNVQNFISQN 104 Query: 81 AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140 +I D + A + VIA+D + G + T V G+ Sbjct: 105 VDAILINPVDSDAIVPAIKAANNAHIPVIAMDR--GSNGGTVLTT---VASDNVAAGKMA 159 Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSN 200 Q + K + K ++ S R G K G I + + Sbjct: 160 AQAVEKLVGKNVKVLELSGT-----PGASATIDRGKGFNSEAKTLG---LNILSSQSANF 211 Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260 D + +ML H +V+ I ND LG +A + G K I GI+G Sbjct: 212 DRTTGLNTTQNMLQSHKDVQ--AIFAQNDEMALGAAKAVQATGQK---IAIFGIDGESET 266 Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 + KA ++ P G + + Y++ + L+ +DN + Sbjct: 267 HDAIKA--GTMTATIAQQPAKIGEMALQATYDYYQGKKIAHMINS--PIYLVDKDNVDQ 321 >UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Proteobacteria RepID=Q98LI2_RHILO Length = 315 Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 62/325 (19%), Positives = 116/325 (35%), Gaps = 24/325 (7%) Query: 3 KFTKALAAIGLAAVMSQSAMAEN-LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV--- 58 + T A + L A+M + +A++ +K+GF PW + K + +V Sbjct: 9 RTTALAATLVLGAMMPGAVLAQDKIKIGFSQGTMNHPWRVAMVEGNKKYAAEHYPDVDLI 68 Query: 59 IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 + D K + ++SL A G K +I + + +V +A +KV+ +D + Sbjct: 69 VTDGNNDASKQVADVESLIAQGIKVLMISPLTEQALTPVVKEAMDAGIKVVTLDRKVNTP 128 Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 V +G G+ L K++ +G ++ R G Sbjct: 129 ------VTVHVGGENLPLGVGAGEFLAKKLNGKGNIIELQGTA-----GASATIDRNKGF 177 Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238 +A+ A P+ ++ A M+ + + + ND LG ++ Sbjct: 178 AEAI--AKHPDMKVVASQNCDYTRDKAVKFMEDMVQRFGPGQIQAVYAHNDEMALGAIQV 235 Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 E G ++ +GI+G + E K G + P V + E Y + Sbjct: 236 LEAAGR-LNEVAVVGIDGQETAFEAVKQ---GKLAATFVYPFV-APEGIETAYKVAKGEE 290 Query: 299 EPPKFTEVTDVVLITRDNFKEELEK 323 P T V +T DN + + K Sbjct: 291 VPETIT--LPTVSVTPDNIADMIGK 313 >UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-binding protein IbpA n=3 Tax=Caulobacteraceae RepID=B8H228_CAUCN Length = 326 Score = 134 bits (336), Expect = 5e-30, Method: Composition-based stats. Identities = 56/309 (18%), Positives = 104/309 (33%), Gaps = 18/309 (5%) Query: 13 LAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLN 71 + A AE + +P+F + + LG +V + A + K ++ Sbjct: 28 MTGCARGGAEAE---VVVSFNDLSQPFFVAMRRELEDEAAKLGVKVQVLDAQNNSSKQIS 84 Query: 72 AIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMM 131 + + A GAK ++ D K + + VI+VD K VP V Sbjct: 85 DLQAAAVQGAKVVIVAPTDSKALAGAADDLVEQGVAVISVDRNIAGGK----TAVPHVGA 140 Query: 132 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ 191 G + K V+ ++ R G D L A G P + Sbjct: 141 DNVAGGRAMADWVVKTYP-----AGARVVVITNDPGSSSSIERVKGVHDGLAAGG-PAFK 194 Query: 192 IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 251 I T ++ A ++L + +I+ +ND +G + A G +A + Sbjct: 195 IVTEQTANSKRDQALTVTQNILTSMRDTPPDVILCLNDDMAMGALEAVRAAGLDSAKVKV 254 Query: 252 IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311 IG + + L++ +A ++ +P + + + + + VL Sbjct: 255 IGFDAI--PEALARIKAGEMVATVEQNPGLQIRTALRQAVDKIKSGAALKSVS--LKPVL 310 Query: 312 ITRDNFKEE 320 IT N E Sbjct: 311 ITSGNLTEA 319 >UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Geobacillus RepID=C6QL47_9BACI Length = 340 Score = 134 bits (336), Expect = 6e-30, Method: Composition-based stats. Identities = 54/304 (17%), Positives = 108/304 (35%), Gaps = 20/304 (6%) Query: 22 MAENLKLGFLVKQPEEPWFQTEWKFADKAGK-DLGFEVI-KIAVPDGEKTLNAIDSLAAS 79 + + +G + ++ W + K EVI A+ D K L+ +++ Sbjct: 53 KSGKIVIGAALPDFDDKWLSYLQDGMKEYEKTQKDVEVIYVDAMNDASKQLSQVENFIQQ 112 Query: 80 GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139 V+ D +V KA ++ ++ V+ F V + K G Sbjct: 113 KVDAIVLIPVDTVSAPEMVDKANQANIPIVVVNRIFDGVD----KATAYVGSESIKAGIM 168 Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199 Q +E+ K + +G + M A +RT G+ +K +P+ ++ T Sbjct: 169 QMEEVAKLLNGKGKIAIMNGQMGHEAQ-----IKRTEGNKQVIKK--YPDMKVVLEGTAE 221 Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259 D + L ++ +V ND +G + A E +G K D+I G++ Sbjct: 222 WDRAKGMSLMENWLQSGKKID--AVVCNNDEMAIGAIMALEDEG-KLDDVIVAGVDAT-- 276 Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 L + ++ + G E+ + + L+T+DN +E Sbjct: 277 PDALEYVKEGKLKVTVFQNAKGQGQLGLEVAIKAAKGEKV--EKFNWIPYELVTKDNVEE 334 Query: 320 ELEK 323 ++K Sbjct: 335 YIKK 338 >UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Tax=Gammaproteobacteria RepID=C1DLC8_AZOVD Length = 315 Score = 133 bits (335), Expect = 6e-30, Method: Composition-based stats. Identities = 63/318 (19%), Positives = 125/318 (39%), Gaps = 22/318 (6%) Query: 5 TKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL--GFEV-IKI 61 T+A+ + + +A+A +L+LG V Q + + + + + + G + ++ Sbjct: 13 TRAVLFATVLCLAGSTALA-DLRLGVSVGQFDN-YIAYLVRAMQERARQVPGGVTLQVED 70 Query: 62 AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121 + D + L ++S A ++ D I +A + ++ ++ + + Sbjct: 71 SGSDVVRQLGQVESFIAQQVDAIIVNPADTAATGGITERATRAGIPLVYLNSRPEVRE-- 128 Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181 V V ++G+ Q + L ++M +G + A++ DT R+RT G D Sbjct: 129 FPAGVVFVGTDERRLGQMQMEYLAEKMGGKG----DLAILLGRLAHDDT-RKRTAGVKDV 183 Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241 L A +P+ ++ + + D N+ L E +V ND +G A Sbjct: 184 L--ARYPQIRVVEEQSGDWQRDKGLDLTNNWLSSGREFD--AVVANNDEMGIGAAMALRQ 239 Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301 G + ++ GI+G L+ +LL P G ++ ++ V KDV Sbjct: 240 AGRR--EVSVGGIDGT--PDGLAAIARGQLAVTLLRDPVAMGEEAVDVALRLVRKDVVQG 295 Query: 302 KFTEVTDVVLITRDNFKE 319 V LIT DN + Sbjct: 296 DVW--IPVHLITPDNHTQ 311 >UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S5J9_9ACTO Length = 335 Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats. Identities = 64/341 (18%), Positives = 122/341 (35%), Gaps = 35/341 (10%) Query: 5 TKALAAIGLAAVMSQSAMAEN---------------LKLGFLVKQPEEPWFQTEWKFADK 49 A + LA S + A + LK+G+ V + P++Q+ Sbjct: 4 LSAACVLALAGCASGAEQAGDVAADGGETTFEAKDPLKIGYSVYDLQNPYWQSYAAGVRA 63 Query: 50 AGKDLGFEVIKIAVPDGEK-TLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKV 108 ++ G EV+ ++ ++ L G +I P + + A G + V Sbjct: 64 GAEEAGIEVVIADQKSSQQEQVSGSLDLINQGISALIITPVQPSALPSTIDAAHGEKIPV 123 Query: 109 IAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANEL 168 + D G D ++ + G + + +++ + V+ + A + Sbjct: 124 VVADI------GTEGDYDGYILSNNYEGGRLAAEHVVEKLGGTPG-PHQVGVIELHAGSV 176 Query: 169 DTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMN 228 R +G +D L +I ++ + G F AA ML +PE+ +I N Sbjct: 177 -VGEERVSGFVDRLGEEE--NFEIVSSLDGNDTVDGGFTAAQDMLSANPELD--VIYAAN 231 Query: 229 DSTVLGGVRATEGQGFKAADIIG-IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSS 287 D + +G RA E G A+ IG +G D +L + G++ P G K+ Sbjct: 232 DDSAVGASRAMETAGVSVANGFTLIGFDGSDPALDLI--EQGVMSGTVAQDPFGQGQKAV 289 Query: 288 EMLYNWVAKD----VEPPKFTEVTDVVLITRDNFKEELEKK 324 E + + + T V ++T +N E + Sbjct: 290 ETALALLNGEDPGYSDEATKTIYFPVEMVTAENVAEFRASR 330 >UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacteria RepID=A1WLB7_VEREI Length = 328 Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats. Identities = 75/312 (24%), Positives = 125/312 (40%), Gaps = 20/312 (6%) Query: 17 MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDS 75 ++ A A LK+GF + P++ + A+ A K G E+I A D K N I Sbjct: 25 LTPVAHAAGLKIGFSQVTLQSPFYVQLKEGAEAAAKAGGDELIFLDANGDVNKQNNDIQD 84 Query: 76 LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135 L +I +P +A A+ + VI VD + +N G + K Sbjct: 85 LLTRKVDVLIINPVNPDAVKPAIAAAQKNGVPVITVD-RSINGGGV----TAHLGRDNVK 139 Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTAR-RRTTGSMDALKAAGFPEKQIYQ 194 +G+ G + E++K+G V+ I + T R G DALK +GF +I Sbjct: 140 MGKAVGDAVLAELKKKGTT--RGKVIEIQGDAGGTVMAARRDGFHDALKGSGF---KIVA 194 Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254 P A A +L HP+VK ++ ND +G ++ G K D+ G+ Sbjct: 195 GPYAEYTRANAVTAMQDLLQAHPDVK--VVYAHNDDMAMGALKVLAEAGKK--DVFVAGV 250 Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314 +G+ + S A + + L P G + + + + P F + +T+ Sbjct: 251 DGLSE-ALASMAGGDQYVATALNDPRYLGDMTVQTARA-IKAGKKVPAFVDA-GTKAVTK 307 Query: 315 DNFKEELEKKGL 326 N E ++ GL Sbjct: 308 ANVGE-FKRTGL 318 >UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transport system n=1 Tax=Gloeobacter violaceus RepID=Q7NMF9_GLOVI Length = 317 Score = 133 bits (335), Expect = 7e-30, Method: Composition-based stats. Identities = 51/294 (17%), Positives = 98/294 (33%), Gaps = 19/294 (6%) Query: 5 TKALAAIGLAAVMSQSAMAENL-KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV 63 AL A+ L A + N +G + ++ +++ + + V A Sbjct: 13 LAALCALVLGACAQNGSEGGNRPVVGVSLLTRQDAFYRELERGLKEEAAKQKLTVRLDAG 72 Query: 64 P-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122 D + +++ V+C D + +A+A D+ V D + K Sbjct: 73 EFDLARQQGQLENYTVQKVAAIVVCPTDSQGIGPAIARANQADIPVFTAD-----IRAKE 127 Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182 V + G G+ K + RG V I + + R G +AL Sbjct: 128 GAVVSHIASDNVAGGRLAGEYAAKRLNGRGQ------VAIIDQPYIQSVIERVRGFEEAL 181 Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242 K +P ++ T + AA +L ++ + +ND + G V A E Sbjct: 182 KP--YPNIRVVARLTGDGVRDRSLKAAEDLLQSQRKLD--AVFAVNDESAFGVVSAIEAA 237 Query: 243 GFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296 G K I +G + + +L + + P G ++ + +A Sbjct: 238 GRKG--IFVMGYDASEEARKLIAGGKSPLQADIAQDPYRIGQETIRAVATHLAG 289 >UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01TB6_SOLUE Length = 323 Score = 133 bits (335), Expect = 8e-30, Method: Composition-based stats. Identities = 57/324 (17%), Positives = 117/324 (36%), Gaps = 13/324 (4%) Query: 5 TKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADK--AGKDLGFEVIKIA 62 T LA+ L A + + F EP+ + +K A + VI A Sbjct: 8 TTGLASAVLLAGCGGEVKKKQFVVAFSQANNAEPYRAAQNALMEKLFAAQPDVKLVISDA 67 Query: 63 VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122 D K + +++ ++ + +A++ +A + VI ++ + Sbjct: 68 QQDNSKQVAQVETFIRQKPDLLIVAPNERAALTAVMGQAMEAKIPVICLERDILQP---- 123 Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182 + + IG GQ + + K+ + V ++ R G+ + L Sbjct: 124 -NYTSYIHSDNVAIGRLAGQFIVGHLTKKYGKPAGNVVAMRGLLGVEGEINRDRGAKEIL 182 Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242 +PE +I P A D +L P++ ++ G ND +G + Sbjct: 183 DK--YPEIKIVADPVADWIQAKAKDRMTEVLRAQPKID--VVYGHNDPMAIGAYLGAKEL 238 Query: 243 GFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302 G + ++I +G++G+ + K G + P + K+ E+ + + P Sbjct: 239 GREK-EMIFVGVDGLGGPAGGIKKVMDGVLAATFVYP-LWVDKAVEIGTRILREPGFVPA 296 Query: 303 FTEVTDVVLITRDNFKEELEKKGL 326 V + V++T +N + EK L Sbjct: 297 KDYVLESVMVTTENAPQMYEKFTL 320 >UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic component n=12 Tax=Proteobacteria RepID=Q2SMT1_HAHCH Length = 309 Score = 133 bits (334), Expect = 8e-30, Method: Composition-based stats. Identities = 62/321 (19%), Positives = 116/321 (36%), Gaps = 14/321 (4%) Query: 5 TKALAAIGLA-AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIA 62 K LA LA A+ + S A +LK+G + ++ + + A KD +V I+ Sbjct: 1 MKKLALSVLASAMFAGSVAAADLKIGVSMAVFDDNFLTALRNGIETAAKDKSVDVQIEDG 60 Query: 63 VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122 + LN I + ASG ++ D +I + A + +I V+ Q +N P Sbjct: 61 KNEVGTQLNQIQNFIASGVDAIIVNPVDTDATVSISSDAEAAGIPLIYVNRQPINVNQLP 120 Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182 + V G Q +E+ + + +G + V+ + A +RT D + Sbjct: 121 DNQA-FVASNEEVSGTLQTEEVCRLLGGKG-----NVVVMMGELSNQAAIQRTKDIHDVI 174 Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242 K ++ T D + L E ++ ND +G ++A + Sbjct: 175 KRKECSGMKVVAEQTAEWSRLKGNDLMTNWLSAGLEFD--AVISNNDEMAIGAIQALKAS 232 Query: 243 GFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302 G K ++ GI+ L+ ++ ++ S G + + + K Sbjct: 233 GRKMDSVVVAGIDAT--PDALAAMKSGDLDVTVFQSAKGQGAGAVDAAVRLAKGENVDQK 290 Query: 303 FTEVTDVVLITRDNFKEELEK 323 L+T N + L K Sbjct: 291 VW--VPFELVTPANLDKYLSK 309 >UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C295_9CLOT Length = 330 Score = 133 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 54/303 (17%), Positives = 102/303 (33%), Gaps = 20/303 (6%) Query: 19 QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDSLA 77 S +G V E + + +K ++LG + V+ A D + + I++L Sbjct: 38 ASKKDGGYTIGCTVYYMTE-FVTLMTEGMEKKAEELGCDLVMLDAQQDAQNQITQIENLI 96 Query: 78 ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137 A ++ D + + ++ V+ F + V G Sbjct: 97 AQKVDVIIVAAVDSDAILPAIEMCDDAGIPLVGVNMLFNTEEPYH-----YVGPDDVLAG 151 Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTAR-RRTTGSMDALKAAGFPEKQIYQVP 196 E + Q E+ G V+ + +A+ +R G+ + L + Sbjct: 152 ELEMQNAIDEIGGEGN------VVILEGPIGQSAQIQRLEGNQNILDKYEGK-INVLADQ 204 Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256 T + A + L K IV ND LG ++A E G I+ G++ Sbjct: 205 TANWSREEALTLVENWLETFSG-KIDAIVAHNDEMALGAIQALEAAGLT-DKIVVTGVDA 262 Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316 + K G++ + G ++ + Y+ + V K D+ IT+DN Sbjct: 263 ILDGCNAVKD--GTLLGTVYQDAGLEGSEAVQKAYDVLEGKV-TEKELSYIDMKWITKDN 319 Query: 317 FKE 319 E Sbjct: 320 VDE 322 >UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MXF0_9FUSO Length = 328 Score = 133 bits (333), Expect = 1e-29, Method: Composition-based stats. Identities = 56/306 (18%), Positives = 117/306 (38%), Gaps = 22/306 (7%) Query: 14 AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTL 70 A + + +K+ + K + ++++ A KAG++LG EV I + K + Sbjct: 26 AGAGKSANSGDKIKIELVSKGYQHEFWRSVEAGAKKAGEELGVEVNFIGPEKETEIGKQV 85 Query: 71 NAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVM 130 +++ I DP + + KA + V+ D T + Sbjct: 86 GMVENAINKKVSALGIAALDPDALAVVAKKAMDAKIPVVTFDSNVKGD-----ITSSFIA 140 Query: 131 MAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEK 190 G G++L K + +G + TA R G +AL A +P+ Sbjct: 141 TDNKVAGAMAGEQLAKLINGKGK-----VAIVSHNPGTTTAIEREAGFREAL--AKYPDI 193 Query: 191 QIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADII 250 +I D A ++ +P++ I G N+ ++ G + E +G ++ Sbjct: 194 KILNTQFSDGDKSKALAITLDIINANPDIAG--IYGTNEPSIFGIAKGVEEKGLT-GKVV 250 Query: 251 GIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVV 310 +GI+ + +++ + G ++ P GY++ + LY + + T + Sbjct: 251 LVGIDSSEDLAKF--LEKGVISGLVIQDPYNMGYQTVQQLYKLSKGEKVEKRID--TGAI 306 Query: 311 LITRDN 316 L+T++N Sbjct: 307 LVTKEN 312 >UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional regulator n=60 Tax=Proteobacteria RepID=B2ILF2_BEII9 Length = 333 Score = 132 bits (332), Expect = 1e-29, Method: Composition-based stats. Identities = 57/312 (18%), Positives = 109/312 (34%), Gaps = 24/312 (7%) Query: 13 LAAVMSQSAMAENLK-LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP---DGEK 68 + + +A A++LK +G V +F + A+ K++ +V I V D K Sbjct: 33 ILVLAMGAAGAKDLKSVGVSVGSLGNLYFVALSQSAEAKAKEINPDVKVITVDSNYDLNK 92 Query: 69 TLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPL 128 N ID+ ASG ++ DPK + + +A+ + V+A D V A Sbjct: 93 QFNQIDNFIASGVDLILLAAADPKAIAPAIKRAQNAGIVVMATDVAAVGADAT------- 145 Query: 129 VMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFP 188 V + GE Q + ++ G ++ ++ + R +G +L P Sbjct: 146 VQTNNVQAGEIACQYIVDKLGAAGGQ-----IIIQNGPQISSIIDRVSGCRKSLANN--P 198 Query: 189 EKQIY-QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA 247 + I L +H ++ V D G A + G Sbjct: 199 KITILSDDQNGKCSRDEGMKIMQGHLTRHRKIDAVFTVC--DPQATGSDLAAQQFGRN-- 254 Query: 248 DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVT 307 + ++G + + K T S P ++ ++ Y + +P + Sbjct: 255 EFFIASVDGAPDIEKAFKGGNTRIQASASQDPYGMAQQAVQIGYE-IMNGKKPDNPMILM 313 Query: 308 DVVLITRDNFKE 319 L+T+DN + Sbjct: 314 PSTLLTKDNVAD 325 >UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Proteobacteria RepID=A8I1T9_AZOC5 Length = 324 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 65/317 (20%), Positives = 119/317 (37%), Gaps = 24/317 (7%) Query: 5 TKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK---I 61 K + AA+++ SA A + + K P+FQT A+ A K +G +V+ Sbjct: 4 LKLFGVVLPAALLATSAFAADETIAVFTKNQTNPYFQTVRVGAEAAAKAMGAKVVHYIPT 63 Query: 62 AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121 + L+ I+ + V D K V + + V+ V D+ +A GK Sbjct: 64 KPDSIPEQLSQIEDVIVKKPSAIVFVPVDYKAMVPGVEQINDAKIPVVNVTDR--SAGGK 121 Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181 + V +G G+ L KEM +G + V+ T R G DA Sbjct: 122 FLA---FVGADDYSLGLETGRYLLKEMGGKG-----NVVILEGVKGSLTNVDRVRGFNDA 173 Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241 LK F + ++ + +++ HP++ ++ ND+ +G + A +G Sbjct: 174 LK--EFKDVKLLASQPANYQRLQGLQVMENLMQSHPQIDG--VLAANDAMAIGAIEALDG 229 Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301 KA +GING + K + S + + G + + + K+ Sbjct: 230 ANRKAK---VVGINGTKEAVDAIK--SGKLLASGDYNGFLQGCIGTMVAIRALRKETIVN 284 Query: 302 KFTEVTDVVLITRDNFK 318 + V ++ N+K Sbjct: 285 EV--VLKPTVVNASNYK 299 >UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic component n=14 Tax=Lactobacillus RepID=Q03CA2_LACC3 Length = 319 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 55/296 (18%), Positives = 98/296 (33%), Gaps = 22/296 (7%) Query: 22 MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASG 80 ++LK+G + P+F + K V + A D K + I+ L Sbjct: 44 APKDLKVGVSLSTLSNPFFVSVRNGIQDLAKKNKTNVQVSDAQNDTAKQNSNIEDLIQKK 103 Query: 81 AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140 +I D + V A + VI VD ++ G + T LV +TK G+ Sbjct: 104 VDVLIINPVDSSAITPAVKDANDAGIPVITVDR---SSDGGKVLT--LVASNSTKGGQMA 158 Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSN 200 + + +++ K + + R R G A K + I T Sbjct: 159 AKYMIEKLGKDAKIAELQGI-----PGASATRERGKGFDGAAKG----KLDIVSKQTAGF 209 Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260 D ++L + ++ I ND LG V+A + G K I +G +G Sbjct: 210 DRAKGLTVTENILQGNGDIVG--IFSQNDEMALGAVQAVKAAGKK---ITIVGFDG--EA 262 Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316 + +A ++ P+ G + + Y+ +V N Sbjct: 263 DGIKAVKAGDMAATVAQKPEEMGRLALQAAYDHFNGKTVKKNVESPLSLVTTEDAN 318 >UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQT3_9CLOT Length = 354 Score = 132 bits (331), Expect = 2e-29, Method: Composition-based stats. Identities = 56/301 (18%), Positives = 106/301 (35%), Gaps = 18/301 (5%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE---VIKIAVPDGEKTLNAID 74 + + E + + ++ K PW+ + FA + +LG + I D EK ++ I+ Sbjct: 41 AGTEKKEGISVYWVGKTLNNPWWISVSDFAQQTADNLGVDLTIAIPQEEVDLEKQVSMIE 100 Query: 75 SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134 + A V+ + KAR +K++ D + + V Sbjct: 101 AAIEKKADAIVVSAASSDGVIPAIKKAREAGIKIVNFDTRISDTS----VIDAFVGGDDV 156 Query: 135 KIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194 + G+ + +++ G + +M E T R G M A A +P ++ Sbjct: 157 AGAYKAGKYICEQLGGEGEVAIITGLM-----EQSTGVDRHAGFMQA--CAEYPGIKVVA 209 Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254 A D ++L +P VK I ND +G V A + G KA D+I +G Sbjct: 210 EQGAEWSSDKAADVTTNILTANPNVK--AIFACNDQMAVGMVNAAKAAGKKADDLILVGY 267 Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314 +G+ ++ + G ++ V + D L+T Sbjct: 268 DGILDAVNMT--MDGDLDAFVSLPNLDEGAMGVKLATALVMNSDYHYDREILYDCTLVTG 325 Query: 315 D 315 + Sbjct: 326 E 326 >UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=5 Tax=Bacteria RepID=C1XFK3_MEIRU Length = 330 Score = 131 bits (330), Expect = 3e-29, Method: Composition-based stats. Identities = 54/328 (16%), Positives = 114/328 (34%), Gaps = 24/328 (7%) Query: 8 LAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP--D 65 L+ + A+ + + + + + ++ T K A++A K LG E+I P Sbjct: 14 LSLLIAVAMYGLAQQQKKYTIALIPGLTTDGFYITMHKGAEEAAKRLGVELIFQGGPEFS 73 Query: 66 GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD------QFVNAK 119 + ++++ A +I D A + +A +K+I VD Q+ K Sbjct: 74 PTTQIPVLNAIIARKPDAILIAPTDRNQLIAPLKRAHEAGIKIITVDTFIGENGQYQTGK 133 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 G + V + G + L K + ++G + + T +R G Sbjct: 134 GNADFPLAYVASDNVEGGRIAARALAKAIGEKGKVYVSN-----VKPGISTTDQREQGFK 188 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 + +K +P + ND A + L ++P++ + G N + +G Sbjct: 189 EEMKK--YPGITVLATQYNDNDANKAASQLAAALARNPDLAG--VFGANLFSAIGAANGV 244 Query: 240 EGQGFKAADIIGIGINGVDAVSELSK-AQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 + G + A + + D + + ++ P G + E + + Sbjct: 245 KNAGKRGA----VKVAAFDCPESIINDIKGGTIDMAVCQHPAEMGRIAVEWAVKALNGEK 300 Query: 299 EPPKFTEVTDVVLITRDNFKEELEKKGL 326 P ++ T +I R N K + Sbjct: 301 IPNRY--GTGYTVIDRANVDSAEAKAAI 326 >UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KN00_RHISN Length = 339 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 50/261 (19%), Positives = 102/261 (39%), Gaps = 11/261 (4%) Query: 8 LAAIGLAAVMSQSAMAENLK-LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPD 65 +A++ LA ++ A A+ +K +G+ V + P +Q K A+K + G +VI D Sbjct: 15 IASVALAGSLAVPAQAQEMKTIGWSVAYFDHPVYQLMMKGAEKVADEAGCKVIFADGKDD 74 Query: 66 GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDT 125 + ID+ A G G ++ V K + ++ D + G+P+ Sbjct: 75 PSVQASHIDNFIAQGVDGIILTPTVSDPLIPAVKKVNDAGIPLVMADRRMQT-HGQPIKW 133 Query: 126 VPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAA 185 LV K G G++ K + +G + V+ + R + ++ Sbjct: 134 EALVSWDMVKSGTIGGEQTVKAIGGKG-----NIVVVEGTPGAGSTIDRGNAFYEVIEK- 187 Query: 186 GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK 245 +P+ +I + + + ++L + + I M D GG++A + G Sbjct: 188 -YPDIKILAKIPANFNRAKGQEVTENILQRFKPGEIDAIYYMADEMTFGGLQAIKAAGR- 245 Query: 246 AADIIGIGINGVDAVSELSKA 266 + I ++G +L +A Sbjct: 246 LGEFKIISVDGQKEAMDLLRA 266 >UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5M8_9PLAN Length = 333 Score = 131 bits (329), Expect = 3e-29, Method: Composition-based stats. Identities = 42/290 (14%), Positives = 91/290 (31%), Gaps = 18/290 (6%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP-DGEKTLNAIDSL 76 S +G + P+F G++V ++ D + N + Sbjct: 43 STKGSVSKGTVGVSLLTTTNPFFNVIADNIKSELVKEGYDVEVVSGEFDVARQKNQVKDF 102 Query: 77 AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136 +G V+C D + + +A + V D + + V + Sbjct: 103 IVAGHAAIVLCPCDSRGIGPAIQEATAAGIPVFTADIACLAPG---AEVVSHIATDNLGG 159 Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAG----FPEKQI 192 G++ + + + + G V+ + ++ R G + + I Sbjct: 160 GKQAAEAMIEAVGSAGGK-----VVILDFKAAESCILRVQGFKEVIDKHNSENPSSAITI 214 Query: 193 YQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGI 252 ++ AA L HP++ I +ND + LG A E KA + + Sbjct: 215 VSELPGDGQKDKSYKAAEDALQAHPDLAG--IFAINDPSALGARAALEKAN-KADQVKIV 271 Query: 253 GINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302 G +G + + + PD G + + + ++ + P + Sbjct: 272 GFDGQ--PDGMQAIDEGKIFADPIQHPDQIGKRVAASIVSYFRGEEVPKE 319 >UniRef50_B3T6P5 Putative periplasmic binding protein and sugar binding domain of the LacI family protein n=1 Tax=uncultured marine microorganism HF4000_APKG2K17 RepID=B3T6P5_9ZZZZ Length = 302 Score = 131 bits (328), Expect = 5e-29, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 24/320 (7%) Query: 3 KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA 62 K K A LA ++ A A+ + L P++ + + A + +LG +++ ++ Sbjct: 2 KLVKLFLASSLAIIIGTLAFADTVLLSMKGPGAGNPFWASVERGAREKAAELGVKIVVLS 61 Query: 63 VP---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 P D + +N ++ G I DP + ++ AR + V+ +D + +N Sbjct: 62 PPQESDVQSQINQVEDQITKGVTAIAIAVTDPNALAKVIESARSAGIPVVFIDTKGINKG 121 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 V + K G + + + RG DV + T + R G+ Sbjct: 122 ------VTFIGTDN-KAGAKMAADFICDRVSRGSDVAILQGII----TQSTGKARADGAH 170 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 LK G I + D ++L ++ ++K + ND+ LG V A Sbjct: 171 AGLKGCG---LNIVAEQPANWDRAQGRTVMENILTRNQKLK--AVFASNDNMALGAVEAL 225 Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 + D+I +G + A ++ G E Sbjct: 226 KDADM-LNDVIVVGFDA--NPDAAKSILAGEMTATIAQFSYNMGAYGVEKALELAKGRSL 282 Query: 300 PPKFTEVTDVVLITRDNFKE 319 PP T +L+T+ N + Sbjct: 283 PPVVDTGT--LLVTKKNAAD 300 >UniRef50_A6W303 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Marinomonas RepID=A6W303_MARMS Length = 325 Score = 130 bits (327), Expect = 5e-29, Method: Composition-based stats. Identities = 64/315 (20%), Positives = 132/315 (41%), Gaps = 26/315 (8%) Query: 7 ALAAIGLAAVMSQSAMAENLK-LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI---- 61 ++ A+ L+ ++SQS+ + LK +G V P+F + A ++L E +K+ Sbjct: 31 SVIAVSLSPLVSQSSEPQPLKSIGISVADLGNPYFVQLVETASVKAEELAGEPVKMLIRS 90 Query: 62 AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121 D ++ + I+ V+ D +A+VAKA+ +KVIAVD VNA+G Sbjct: 91 DAYDWQRQIGQINDFIDQKVDLIVLTAADEYKVAAVVAKAQRAGIKVIAVD---VNAQG- 146 Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181 + + G ++L +++ +G V + V+ + + R G A Sbjct: 147 ---ADATITTDNVQAGAIACEKLAEKINYQGNFVIINGVL------VSSVIERVAGCKSA 197 Query: 182 LKAAGFPEKQIY-QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240 L +P+ + + + G +A ++ ++ + + +ND T G +RA + Sbjct: 198 LNK--YPDITLLSDRMNGTGSVEGGMEAMTYLMEEYDHID--AVFTINDPTAFGALRAAQ 253 Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300 K + + I+G +E+ K Q + + + P K+ E+ + + Sbjct: 254 QANRK--EFVLASIDGAPFATEIIKQQDNPWIATAVQRPIPMAEKAIEIGMDLLKGKEVA 311 Query: 301 PKFTEVTDVVLITRD 315 +F + LI ++ Sbjct: 312 QRFI-LIPSTLIEKN 325 >UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT83_9FIRM Length = 324 Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats. Identities = 71/326 (21%), Positives = 120/326 (36%), Gaps = 21/326 (6%) Query: 5 TKALAAIGLAA---VMSQSAMAENLKLGFLVKQPEEPWFQTE-WKFADKAGKDLGFEVIK 60 T A+ LAA +S + + +G EPW + A A K FEVI Sbjct: 11 TAAMGVSVLAAGTVTVSAAEKKDKYVIGMSQCNLGEPWRVAMNDQIAMAAEKHPEFEVIF 70 Query: 61 -IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 A D K + I++ G + + + V+ A + VI +D + K Sbjct: 71 ADAAQDNSKQIADIENFVQMGVDLIITSPNEATPLTNAVSAAYDAGIPVILLDRKIDGDK 130 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 + +G G+ + + G V E + T+ +D R G Sbjct: 131 YTQ-----FIGADNVDMGRIAGEYIADTLLPDGGKVCEIKGLEGTSGGID----RDNGFR 181 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 + +K + +I V A A ML + E+ L + +ND G A Sbjct: 182 EGIKKND--KIEIVAVNNADWLREKAITVAEEMLQTNDEID--LFLALNDPMAEGAYIAA 237 Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 + G + DI+ +G +G+ ++ G S+ G ++ E Y + + E Sbjct: 238 KNAGRE-GDILFVGFDGLPTPDGGIRSVMDGRL-SMTQVYPTGGTEAIESAYQLLVEGKE 295 Query: 300 PPKFTEVTDVVLITRDNFKEELEKKG 325 K +T ++T DN +E LEK G Sbjct: 296 LDKTLTLTS-EIVTPDNAEELLEKFG 320 >UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional regulator n=19 Tax=Enterobacteriaceae RepID=A8GD74_SERP5 Length = 309 Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats. Identities = 51/318 (16%), Positives = 114/318 (35%), Gaps = 21/318 (6%) Query: 5 TKALAAIGLAAVMSQSA-MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG--FEVIKI 61 K L + M ++ +A+++K+G + ++ + + K G + Sbjct: 3 LKKLIVTSVLMCMLPASVLAKDIKIGVSMAYFDDNFLTILRQSMQSKMKQDGNVSGQFED 62 Query: 62 AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121 A D + + I++ + G ++ D + ++ A + ++ V+ + + Sbjct: 63 AKGDIAQQIQQIENFVSQGVDAIILNPVDTQGVKPMIKLAESAKIPLVFVNRR---PEVT 119 Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181 + V + G+ Q +EL K M +G + ++ + + R RT G + Sbjct: 120 LPAGMAYVGSDSKLAGKLQMEELAKLMNGKG-----NVMILMGELSNEATRDRTRGVEEV 174 Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241 AA +P +I T A D + ++ I ND +G + A + Sbjct: 175 --AAKYPGIKILDKQTAKWGRKEAVDITTDWALTGQQID--AIASNNDEMAIGAILALKQ 230 Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301 K + ++ G++G L + S+ G + + V + Sbjct: 231 A--KKSGVLVAGVDGT--PDALEYIKKGDLALSVFQDAKGQGEGAVQTAIQLVKGEKVES 286 Query: 302 KFTEVTDVVLITRDNFKE 319 + LIT+ N++E Sbjct: 287 NV--LIPYQLITKANYQE 302 >UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=A6VWF2_MARMS Length = 322 Score = 130 bits (326), Expect = 8e-29, Method: Composition-based stats. Identities = 57/330 (17%), Positives = 114/330 (34%), Gaps = 24/330 (7%) Query: 2 HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTE-----WKFADKAGKDLGF 56 +K + +A + ++ A K+G V + W AD K+ Sbjct: 5 NKIMRLIAVFTMLFAFVGTSYAAKYKIGISVPSADHGWTAGLLWWANKAAADLKAKEKDI 64 Query: 57 EVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116 E +A G K + ++ L G VI +P ++ +A + + VD + Sbjct: 65 EFFVVASSSGSKQVGDVEDLMIKGIDALVILPHNPATLQKVIEEAYDEGIYTVVVDREL- 123 Query: 117 NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTT 176 P V + +G Q L KEM +G V+ I ++ ++R Sbjct: 124 ---AHPAQNV-FIAGDNAGLGRVGAQWLAKEMSGKGN------VVVIEGLQIPINKQRVD 173 Query: 177 GSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 236 D + AG+P +I A + L +HP++ + +D + G + Sbjct: 174 AFNDVI--AGYPNIKILDSQPGDWSTQKALSVMENFLQKHPKID--AVWCQDDDMLKGVL 229 Query: 237 RATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHG---YKSSEMLYNW 293 +A E G +G G + E+ ++ ++ SP + + + + Sbjct: 230 KAIEESGRT-DIKTVLGGAGSKDIIEMIQSGNKMVRATVTYSPSMIASGIALAVHGVKHE 288 Query: 294 VAKDVEPPKFTEVTDVVLITRDNFKEELEK 323 + + L+T++N + K Sbjct: 289 KLGYLYHEPSRVILGADLVTKENAADYYFK 318 >UniRef50_Q0SII4 ABC ribose transporter, substrate-binding component n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0SII4_RHOSR Length = 322 Score = 129 bits (325), Expect = 1e-28, Method: Composition-based stats. Identities = 54/315 (17%), Positives = 106/315 (33%), Gaps = 26/315 (8%) Query: 5 TKALAAIGLAAVMSQSAMAENLK--LGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKI 61 T +AA + A S + ++ +G + P+F E + + A + EV ++ Sbjct: 23 TALIAAGTMTACTSGTGAGDDGTTTIGVTLNAASNPFFLAEGQAIETAAAEKRVEVSVQY 82 Query: 62 AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121 A D + ID+ ++ D + +A ++ V+AVD + A Sbjct: 83 ANADVAVQSDQIDTFIRQKVDSIIVDAVDSDGIGPALLRATQANIPVVAVDVTAIGADAT 142 Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181 V + G L +++ G V + + R G +A Sbjct: 143 -------VTSDNVQAGREACTYLVEQLGGSGK------VAIVDGAAVSAISDRMQGCREA 189 Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241 L A P ++ A + A+++L +P+V + G+ND T +G A + Sbjct: 190 LDA--HPGIEVVATQRADLTRDKAMNVASTILTANPDVDGF--FGVNDPTAIGISLAAQQ 245 Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301 +G + A + + P G ++ +A + Sbjct: 246 KGVDVKVVGV-----DGAKQLTDLLGKSSIIATSGQDPAQLGRSGLDIAV-RLAGGEKVD 299 Query: 302 KFTEVTDVVLITRDN 316 + VL+T D Sbjct: 300 SAPTLIPTVLVTADT 314 >UniRef50_P39325 ABC transporter periplasmic-binding protein ytfQ n=141 Tax=Bacteria RepID=YTFQ_ECOLI Length = 318 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 65/301 (21%), Positives = 104/301 (34%), Gaps = 13/301 (4%) Query: 26 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGF 84 L +GF E W E A + G + I E + A+ S A G Sbjct: 24 LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83 Query: 85 VICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQEL 144 I ++ +A+ ++ V +D T V G+ G L Sbjct: 84 FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTT--VTADNILEGKLIGDWL 141 Query: 145 YKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPG 204 KE+ + +V E A R G +A+K A P +I + + Sbjct: 142 VKEVNGKPCNVVE----LQGTVGASVAIDRKKGFAEAIKNA--PNIKIIRSQSGDFTRSK 195 Query: 205 AFDAANSMLVQHPEVKHW-LIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSEL 263 + S + K+ ++ ND V+G ++A + G K I G +D V ++ Sbjct: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTG--SIDGVPDI 253 Query: 264 SKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEK 323 KA G + + + + L + P K T +T L D KEELEK Sbjct: 254 YKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLT-LTKSTLYLPDTAKEELEK 312 Query: 324 K 324 K Sbjct: 313 K 313 >UniRef50_UPI0001C31742 periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31742 Length = 356 Score = 129 bits (324), Expect = 1e-28, Method: Composition-based stats. Identities = 51/301 (16%), Positives = 101/301 (33%), Gaps = 21/301 (6%) Query: 24 ENLKLGFLVKQPEEPWFQTEWKFADKAGK----DLGFEVIKIAVPDGEKTLNAIDSLAAS 79 +G+ V W + A + + V + +K ++ + S+ + Sbjct: 45 GKFTIGYDVYWLGNSWSTQLAEEFRAAAERNRDSIEKVVYTQSDNQVQKQISNVQSMISR 104 Query: 80 GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139 ++ P ++ +A + VI V + DT V G Sbjct: 105 RVDAIIMTPISPSASVPVIQQANRAGIPVILVA-----GQADTRDTAAEVRADDIVFGRT 159 Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199 + L +E+ RG + + T R G+ D +P+ ++ + Sbjct: 160 GAEWLVRELGGRGKIYVLNGL-----PGFSTDTLRWKGAKDVFDR--YPDIEVVADAHAA 212 Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259 D A A ++ML HPEV + + LG ++A G + G NG+ Sbjct: 213 WDTARAKTAVSNMLAAHPEVDG--VWSQGGAMTLGAIQAFRAAGKPLVPMTGENNNGLMK 270 Query: 260 VSELSKAQATGFYGSL-LPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318 V + + S+ + +P G ++ N + D + + + IT DN Sbjct: 271 VWDSLNRAGDRRFDSIGVVNPTWVGSEALTQTLNLLRGDEV--RKVNLVNPAPITSDNLA 328 Query: 319 E 319 + Sbjct: 329 D 329 >UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BDP6_9FIRM Length = 309 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 51/298 (17%), Positives = 109/298 (36%), Gaps = 21/298 (7%) Query: 22 MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG-FEVIKIAVPDGEKTLNAIDSLAASG 80 + LK G P+F + +++ + G + + + D +K I + G Sbjct: 24 TRKQLKFGATYMTMNNPYFVNMDENIEESVQAKGDILITRDPLQDQKKQNEQIKDMINEG 83 Query: 81 AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140 + D + + + V +D + + + V ++ G + Sbjct: 84 IDVLFLQPVDRNKVRPALELCKKKHIPVFVIDSEVSDTEAV----VSTIVSDNYDAGVQC 139 Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSN 200 +++ K + ++ + L++ R G D +K G P+ +I + + Sbjct: 140 AKDMMK-------KKTSANIIIVNQKALNSINERVKGFRDTIK--GHPQYKIVEEKESAA 190 Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260 + A ++ + +++G ND LG + A + K ++ G++G Sbjct: 191 EFEIAMKVMEKIIYEKKNYD--VVMGGNDPIALGCIAAMQMTD-KTDQVMVYGVDGSPDG 247 Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318 + KA G+ SP G K+ + Y+++A + T V LIT DN K Sbjct: 248 KAMIKA--GFLEGTAAQSPIKIGEKAVQTAYSYLAGETVKKHVT--IPVELITADNLK 301 >UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RW63_9CLOT Length = 375 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 52/301 (17%), Positives = 111/301 (36%), Gaps = 17/301 (5%) Query: 24 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAK 82 + +G+ + E + GF++I A + K ++ ++ L A Sbjct: 87 SDYLIGYSQLANTGTYRIAETNSMKDEAEKRGFKLIVTDAQDNTAKQVSDVEDLIAQNID 146 Query: 83 GFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQ 142 ++ + + + A+ + VI VD G +D V + G+ G+ Sbjct: 147 LLILSPREFEGLETALQTAKENSVPVILVDRLAKGEAG--VDYVTYIATDFVWEGQAAGE 204 Query: 143 ELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDI 202 L + ++ + + +A+ R TG + +I T + + Sbjct: 205 WLKDKTGGTCNIIELTGTV-----GSSSAQDRATGFAGVVDQNE--GMKIIASQTGNFER 257 Query: 203 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA-ADIIGIGINGVDAVS 261 ++L H + + ND LG V+A + G+K DI+ IGI+G + Sbjct: 258 SEGQKVMENLLQAHGG-EVDAVFCHNDQMALGAVQAIKAAGYKPNEDILVIGIDG--EMD 314 Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEEL 321 A +++ SP ++G + + + +A P + + V++ N +E + Sbjct: 315 SFKSVIAGEMSATVVSSP-MYGPITFDTVEKILAGQEVPE--QTIMEGVVVDAGNAQENM 371 Query: 322 E 322 E Sbjct: 372 E 372 >UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EY05_9FIRM Length = 329 Score = 129 bits (323), Expect = 2e-28, Method: Composition-based stats. Identities = 53/297 (17%), Positives = 115/297 (38%), Gaps = 20/297 (6%) Query: 21 AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG-FEVIKIAVPDGEKTLNAIDSLAAS 79 + +G L P+F+ + + G + + D + ++ Sbjct: 42 SEKSKRTIGALYMTMNNPYFEVINEEIKAVVESKGDVLETRDSGMDAKVQAKQVEKFIEE 101 Query: 80 GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139 +I D K + + KA+ + VIAVD N V+ + GE+ Sbjct: 102 KVDCILINAVDWKKIGSSLEKAKKAGIPVIAVDALIYNRS----FVDGTVVSNNYQAGEQ 157 Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199 ++L K +K ++ + +E +A R G + L+ AG+ + + ++ + Sbjct: 158 CAKDLMKRRKK-------GKILFLVQSENKSAIDRIKGFKETLEKAGWKYENVGELECQG 210 Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259 + + +L + ++ +++ +ND + +G + A + + +D++ G +G Sbjct: 211 Q-LELSQPLVEKVLNKTKDID--VVMALNDPSAMGAMAALDAEHM-LSDVLVYGADGSPE 266 Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316 + + SP G K+ EMLY + D + + + V LIT+DN Sbjct: 267 AKTMIYENK--MAATSAQSPRTTGKKTVEMLYKIL--DGKKTEKQCIVPVSLITKDN 319 >UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W799_DYAFD Length = 310 Score = 128 bits (322), Expect = 2e-28, Method: Composition-based stats. Identities = 45/300 (15%), Positives = 104/300 (34%), Gaps = 20/300 (6%) Query: 24 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGE-KTLNAIDSLAASGAK 82 +NL +G + + + + K++G E+I + K + ++S G Sbjct: 30 DNLVIGATMLSMQNEFIVNVSDAMEAKAKEMGVELITVDAERSALKQVEQVESFIGQGVD 89 Query: 83 GFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQ 142 ++ + + S + A + +I V+ + V T+ + Sbjct: 90 AIIMNPAEVEASSPAIKLAMDAKIPIINVNSE------TSAKPTAFVGSDDTESARIAMK 143 Query: 143 ELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDI 202 + +++ +G + M A +R G+ D LKA P ++ + D Sbjct: 144 YIAEKLGGKGNILMMHGFMGQAAQ-----IKRDNGAKDILKAN--PGLKLLAEQSGEWDR 196 Query: 203 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSE 262 + + + + K I ND +G V+A E G K ++ + ++ + Sbjct: 197 AKGMSLTENWIQSYGD-KINAIFAQNDEMGMGAVKALEAAGLK-GKVLVVSVDAI--PDA 252 Query: 263 LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELE 322 L + ++ + G K+ E K+ + + L+ + N + L+ Sbjct: 253 LQAVKKGTLDATVFQNAKEQGGKAIETAVKAAKKEAFEKEV--LIPFQLVDKGNVEGFLK 310 >UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R356_ARTAT Length = 314 Score = 128 bits (321), Expect = 3e-28, Method: Composition-based stats. Identities = 50/308 (16%), Positives = 112/308 (36%), Gaps = 20/308 (6%) Query: 17 MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP-DGEKTLNAIDS 75 + + +G + + ++ KA D G+E++ + + + +N + + Sbjct: 19 AANAGGTGKKTIGVSMPEFHSLFYVAAVDGMKKAAADEGYELVVLNANGNSSQQVNQVQN 78 Query: 76 LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135 L + D G+A VA+A+G ++ VIA+D + D + + K Sbjct: 79 LVTQQVGAVIFAMQDATAGAAGVAEAKGANIPVIAIDQRP------QGDVTTFIGSDSVK 132 Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195 L K+M +G V+ T R+ G L+ P+ ++ Sbjct: 133 ASTELCDYLAKQMGGKGNLAIIKGVL-----GSSTEIERSKGCGSILEKN--PDIKVVST 185 Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255 D A++ A +L +PE++ I ND A +++ + ++ Sbjct: 186 TNADWDENKAYNVAQDVLTANPELQ--AIFAQNDGMA--LGAAKAAAQAGRSNLKIVSVD 241 Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315 G V + ++ ++ P G + ++ + + ++ VL+T++ Sbjct: 242 GFPQVYDAI--ESGQVLATMSQEPYQMGELAVRTAIKAMSGEAGSIQKEQLQPTVLVTKE 299 Query: 316 NFKEELEK 323 N +E Sbjct: 300 NLEEARSA 307 >UniRef50_C1D9L7 RbsB protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9L7_LARHH Length = 330 Score = 128 bits (320), Expect = 3e-28, Method: Composition-based stats. Identities = 62/296 (20%), Positives = 115/296 (38%), Gaps = 26/296 (8%) Query: 27 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPD--GEKTLNAIDSLAAS-GAK 82 ++ ++K P P+F A +A + G ++ IK+A D E+ + ID + A A Sbjct: 47 RIVLVMKSPTNPYFSELANGASRAQLETGIDLSIKVAHEDDALEQQIRLIDEVIAKHQAD 106 Query: 83 GFVICTPDPKLGSAIVAKARGYDMKVIAVDD----QFVNAKGKPMDTVPLVMMAATKIGE 138 VI D ++A+AR + VI + + + V G P+ VPL+ + Sbjct: 107 AIVIAPTDSIRLVPVLARARKAGIHVINIGNRLEPRIVALYGMPV--VPLISIDNASAAY 164 Query: 139 RQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTK 198 + +L + + RG V + T N R+RT G++ A AG ++ + Sbjct: 165 QVAGKLAEGLP-RGSKVAIIEGLLGTNN----TRQRTEGALQAFSEAG---LRVVAKQSA 216 Query: 199 SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVD 258 A+ +L +P+++ I ND LG R +G + G +G+ Sbjct: 217 RWKGDEAYQVTAQLLRDYPDLR--AIFCSNDMMALGAARYLREKGITG--VRLAGFDGIT 272 Query: 259 AVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314 + ++ GY + + + +A P + D L+T Sbjct: 273 EARSALHQRQ--LVATIDQHASEQGYLAVRLAVDAIAG--RPLAEETLVDTELLTA 324 >UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=Q28MQ8_JANSC Length = 343 Score = 128 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 57/304 (18%), Positives = 116/304 (38%), Gaps = 26/304 (8%) Query: 20 SAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG-FEVIKI---AVPDGEKTLNAIDS 75 +A + +G ++K +FQ A+ ++ G +E++ + D E +NA+++ Sbjct: 58 AAAQDQPTVGLIMKSLANEFFQNMMVGAEAHAEERGDYELLAVGMQNETDFESQINAVEN 117 Query: 76 LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVI----AVDDQFVNAKGKPMDTVPLVMM 131 G V+ D + + +A + VI A+D + +G + V Sbjct: 118 FITQGVDAIVVAPADSRAMVRPLRRAMEAGITVINFDVALDTGAMEQQGIELA---FVGP 174 Query: 132 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ 191 ++G E G V V+ D A +R G DA+ G + Sbjct: 175 DN-RMGAEMAGNALGEALGEGGRV----VIIEGNPGADNATQRRLGFEDAIATHG---LE 226 Query: 192 IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 251 + + T + A +ML HP+++ ++ NDS +G + A + G DI+ Sbjct: 227 LLESRTAHWETEEANQVFAAMLTAHPDLQG--VMAANDSMAIGVIEALDAAGR--DDILV 282 Query: 252 IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311 +G + V AV L + ++ + ++ + V+ + T + L Sbjct: 283 VGFDAVPAV--LPMIEDGRMLATVDQFGQAMAANAIDLALEVLETGVDLEGWVR-TPIEL 339 Query: 312 ITRD 315 +T + Sbjct: 340 VTAN 343 >UniRef50_A6DJR9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DJR9_9BACT Length = 326 Score = 128 bits (320), Expect = 4e-28, Method: Composition-based stats. Identities = 55/322 (17%), Positives = 104/322 (32%), Gaps = 29/322 (9%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLK-----------LGFLVKQPEEPWFQTEWKFADK 49 M K AL + + S +++ LG V P+F + A Sbjct: 1 MKKLLNALMLLACLGLFSSCGESDSASSNEPLQKNKKLLGITVMTLANPFFVELAEAAKA 60 Query: 50 AGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVI 109 + G+EVI ++ D EK + + ++ + + A ++ V Sbjct: 61 EAEKHGYEVIILSGDDAEKQAKQMKDFISQKVDAIIVAPKNTLAIGEPIKAANAAEIPVF 120 Query: 110 AVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELD 169 D + K V VM G+ Q + + G V+ + + Sbjct: 121 TADTGCTDPGAK---VVCNVMTDNFGGGKLAAQAMIDVLPNGGK------VLILDFKKAQ 171 Query: 170 TARRRTTGSMDALKAAG--FPEKQ--IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIV 225 + R G + + P+K+ I + + A L P++K + Sbjct: 172 SCLLRVDGFKEVIAEHNEAHPDKKIVIVAELDGAAAEEPSKKATEDQLNATPDLKG--VF 229 Query: 226 GMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYK 285 +ND + LG V A + K D+ IG +G+ E + + P G Sbjct: 230 AINDLSALGAVVALKKAN-KLQDVKIIGFDGLRIGKEAI--LRGEIHADPIQFPSEIGKL 286 Query: 286 SSEMLYNWVAKDVEPPKFTEVT 307 + + + + D P+ T Sbjct: 287 TVQQILAYKNGDEVKPEILIAT 308 >UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZZ1_MARMS Length = 294 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 53/304 (17%), Positives = 107/304 (35%), Gaps = 24/304 (7%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-I 59 + +FT A+ LA+ + + + P++ + K + + Sbjct: 4 LKRFTA--IAVALASASFNLYAKDEPVVCASLLTQSHPFYIALGNGLKEGAKLQHINLKV 61 Query: 60 KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 +A D K +N I+ VI D K + KA ++ VI VD N+K Sbjct: 62 SVANQDLAKQINDIEDCITKNVDAIVISPVDSKGIRGPLKKAERANIPVITVDIGAENSK 121 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 V + G G+ K++ +G V+ ++ + + R G Sbjct: 122 -----IVSHIATDNYGGGVVAGKLAVKQLGGKGQ------VVMLSYPGISSVEARLQGFR 170 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 DA+ + +I V + + +ML +P+ LI D ++G A Sbjct: 171 DAVADT---DIKIVAVQPGK-TREESMTSTINMLQANPDTD--LIFAFGDDMMIGAGLAV 224 Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 Q KA + IG +G+ + + G + D G + +++ +++ Sbjct: 225 TKQKSKA---VVIGFDGMPEGIKAVD-ENDHIIGVVKQDADAMGKTAMKVVADYLNGKEV 280 Query: 300 PPKF 303 ++ Sbjct: 281 KSEY 284 >UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPX4_9CLOT Length = 362 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 48/308 (15%), Positives = 109/308 (35%), Gaps = 24/308 (7%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP---DGEKTLNAID 74 + S + +GF+ + T A + G ++ A + L I+ Sbjct: 64 AASGNYGDKTIGFVGMTLNNEYHITLANGAKVEAEAKGVKIEVQAGDQHASADAQLGIIE 123 Query: 75 SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK-GKPMDTVPLVMMAA 133 ++ A+ G ++ + + K + + +I +D + + +P Sbjct: 124 NMIANKVDGILLVPSSSDGLESALTKCKEAGIPIINLDTKLTDESLANVGLDIPFYGTNN 183 Query: 134 TKIGERQGQELYKEMQKRGWDVKESAVMAITANELDT-ARRRTTGSMDALKAAGFPEKQI 192 + + G+ + K + K + + E T A R G ++ + Sbjct: 184 YEGAKLAGEYVAKNFE------KGTKTAILKGIEGQTNAADRYNGFIEGAGDT----VTV 233 Query: 193 YQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGI 252 T + ++ + AA +++ +P+V+ L ND+ +G +RA + I I Sbjct: 234 VAEQTANWEVDQGYTAAQNIISANPDVE--LFFCCNDNMGIGALRAIKEANM-QEQIQII 290 Query: 253 GINGV-DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311 G + V +A++ + + F ++ P G + + + T + Sbjct: 291 GFDAVSEALNLVENGE---FLATVAQYPAEMGKLGVDNMLKIFDGGEA--ESYIDTGTEV 345 Query: 312 ITRDNFKE 319 IT+DN E Sbjct: 346 ITKDNVGE 353 >UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QJX6_9SPHI Length = 317 Score = 127 bits (319), Expect = 5e-28, Method: Composition-based stats. Identities = 50/306 (16%), Positives = 103/306 (33%), Gaps = 20/306 (6%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGE-KTLNAIDSL 76 SQ + L +G + + + DK + G E+I + K + ++S Sbjct: 31 SQDGEGKKLVVGATMLSMQNEFIVNVHDEMDKEAQKAGIELITVDAERSALKQVEQVESF 90 Query: 77 AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136 A ++ + + S VAKA + +I V+ + V + Sbjct: 91 IAQKVDAIIMNPCEVEASSPAVAKALAAKIPIINVNSE------TSSKPSAFVGSDDVES 144 Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196 + + ++ +G + VM +R G+ + LK +P ++ Sbjct: 145 ARIAMKFIADKLGGKG-----NVVMMHGYMGQAAQIKREQGAREILKQ--YPNLKLLAHQ 197 Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256 T D A + + + + + ND LG V+A G K +I + I+ Sbjct: 198 TGEWDRAKAMSLMENWIQSY-GSQINAVFAHNDEMGLGAVKALTDAGLK-DKVIVVSIDA 255 Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316 + L + ++ + + G K+ P + L+T+DN Sbjct: 256 I--PDALQAVKKGSLDATVFQNAEQQGAKAIATAIKAAKGQ--PFDKETLVPFQLVTKDN 311 Query: 317 FKEELE 322 + L+ Sbjct: 312 LSKFLK 317 >UniRef50_A7II12 Periplasmic binding protein/LacI transcriptional regulator n=42 Tax=Bacteria RepID=A7II12_XANP2 Length = 347 Score = 127 bits (318), Expect = 6e-28, Method: Composition-based stats. Identities = 58/311 (18%), Positives = 111/311 (35%), Gaps = 24/311 (7%) Query: 6 KALAAIGLAAVMSQSAM---AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA 62 ++A GLAA A A+ +G ++K P+F + A+ A LG E+ A Sbjct: 11 ASVAWAGLAATSPAGAAEKPADKPIVGIVIKTSTNPFFVKMKEGAEAAAARLGLELRSFA 70 Query: 63 VP---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 D + + A++SL A+GAKG +I D + ++ +AR + VIA+D Sbjct: 71 GKMDGDTDAQVTAVESLIAAGAKGILITPSDSRAIVPVLEQARAKGILVIALDTPLDP-- 128 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 P G+ G+ K + K A++ + N++ R G + Sbjct: 129 --PGAADATFATDNVLAGKLVGEWAAKTLGANAKSAK-VALLDLNVNQISVDVDRDQGFL 185 Query: 180 DALKA--------AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDST 231 + +I + G A ++L + P V ++ +N+ Sbjct: 186 KGFGVNVADPAVIGDEKDSRIVGHDVTLGNEEGGRRAMENLLQRDPYVS--VVYAINEPA 243 Query: 232 VLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLY 291 G A G D++ + ++G + + + + P E + Sbjct: 244 AAGAYEALRSIGRDK-DVLVVAVDG--GCPGVRNVKDGVIAATAMQFPLAMAQMGVEAVL 300 Query: 292 NWVAKDVEPPK 302 + +P Sbjct: 301 KYATDGTKPKP 311 >UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding protein n=4 Tax=Clostridium difficile RepID=C9XJ75_CLODC Length = 320 Score = 127 bits (318), Expect = 7e-28, Method: Composition-based stats. Identities = 54/299 (18%), Positives = 106/299 (35%), Gaps = 22/299 (7%) Query: 23 AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGA 81 ++L +G + +F + + K+LG +VI D K +AI+ Sbjct: 39 KKDLTIGVSTITLQHQFFIDIDEGIKEKAKELGVKVIVNDPDQDVAKQTSAIEDFIQQNV 98 Query: 82 KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141 G ++ D V A M V+ VD + V + G++ G Sbjct: 99 DGMIVLGTDNSAIVPAVEGAFE-KMPVVTVDAVLNTE-----NITSYVGTVSYDAGKKLG 152 Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201 + K + ++ E + +T + +R G DALK + +I D Sbjct: 153 EYTKKYIDEKLGGKSE--IAIVTDLKSQIQMQRIDGFKDALKGS--ANVKILNSQPG-YD 207 Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261 + + +++ +P+V +I +++VLG A E K D+ +G + + Sbjct: 208 REESLNTVENLIQSNPDVD--IIYATAENSVLGAKAALESA--KNKDVKIVGFDLTE--- 260 Query: 262 ELSKAQATG-FYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 E S G + P G + E + + + +L ++N K+ Sbjct: 261 EASSGITDGTILAMIQQQPKEMGRLAVEAVVKAIKGEKVEKNIP--VPALLYDKENIKD 317 >UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alphaproteobacteria RepID=A6UE72_SINMW Length = 310 Score = 126 bits (317), Expect = 8e-28, Method: Composition-based stats. Identities = 57/321 (17%), Positives = 104/321 (32%), Gaps = 19/321 (5%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 M T +AA + + ++ AE K+G V + +F +K ++ G EV+ Sbjct: 1 MKLSTLLVAATTASVLALPASAAEVKKIGLAVPNLQADFFNQIKLGVEKHAREKGLEVVV 60 Query: 61 I-AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 + A D ++ + L F+ + AR + VI VD A Sbjct: 61 VDAKNDTNTQVSQVQDLMIQDIDAFIYIPAGAAAAAVPTRLAREAGIPVINVDRVPEGAP 120 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 G + + + + + ++ G + R TG Sbjct: 121 GD-----TFIAGESVESAYAVCKFIIEKAGGSGKMA-----IIHGQKGTTPEVDRFTGCK 170 Query: 180 DALKAAGFPEKQIYQVP-TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238 A+ ++ + F A +ML +P++ +I G D +G +A Sbjct: 171 RAIDEN--KGVELIDQQWSNMWSADEGFSIAQNMLQANPDIT--IIFGQADGLAMGAAKA 226 Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 + +I G +G + E F + S G + E A + Sbjct: 227 VDVANLS-DKVIIGGYDGDVSALEYLARCKGPFIATATQSTQKMGVLAVESALAVAAGEK 285 Query: 299 EPPKFTEVTDVVLITRDNFKE 319 + T + VL T DN E Sbjct: 286 VEERQTP--NAVLTTCDNAPE 304 >UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_9BACE Length = 960 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 56/321 (17%), Positives = 118/321 (36%), Gaps = 28/321 (8%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 M T +GLAA A ++G + + ++ W + + + ++ + Sbjct: 8 MKWITVLFCLLGLAACRQD---APRFRIG-VAQCSDDSWRHKMND--EILREAMFYDGVS 61 Query: 61 I----AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116 + A D K + G +I + + IV +A + VI VD + + Sbjct: 62 VEIRSAADDNRKQAEDVHYFIDKGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKIL 121 Query: 117 NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTT 176 + K + +IG G + ++ +G V+ + + A R Sbjct: 122 SDK-----YTAYIGADNYEIGRAVGNYIASSLKGKGNVVELTGL-----GGSTPAMERHQ 171 Query: 177 GSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 236 G M A+ + +P+ ++ + + A +SML +HP++ + ND G Sbjct: 172 GFMAAI--SNYPDIKLIDKADAAWEREPAEVEMDSMLRRHPKID--AVYAHNDRIAPGAY 227 Query: 237 RATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296 +A + G + ++I +GI+ + + + P G K ++ N + K Sbjct: 228 QAAKKAGREK-EMIFVGIDALPGKGNGLELVLDNVLDATFIYPTN-GDKVMQLAMNILEK 285 Query: 297 DVEPPKFTEVTDVVLITRDNF 317 P + V + ++ R N Sbjct: 286 KSYPRE--TVMNTAVVDRTNA 304 >UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding protein n=7 Tax=Thermotogaceae RepID=B9K719_THENN Length = 323 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 53/294 (18%), Positives = 101/294 (34%), Gaps = 29/294 (9%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 M K L+ + + + L +G + K P++ + AGK LG + Sbjct: 1 MRKLLVFLSVVLITGLSLA------LTIGVIGKSV-HPYWSQVEQGVKAAGKALGVDTKF 53 Query: 61 I--AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 D L ++S A G G I DP + KA + VI +D ++ Sbjct: 54 FVPQKEDINAQLQMLESFIAEGVDGIAIAPSDPTAVIPTIKKALEMGIPVITLDTDSPDS 113 Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 G+ + + + G G + + + +G V + + + +R G Sbjct: 114 -GRYV----YIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSL-----QRIQGF 163 Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWL-IVGMNDSTVLGGVR 237 DA+ + E +I + D A A + L HP++ + + N + Sbjct: 164 KDAIADS---EIEIVDILNDEEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPSQ---AL 217 Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLY 291 + G K + + + L + ++ P + GY S +LY Sbjct: 218 VVKNAG-KVGKVKIVCFDTT--PDILQYVKEGVIQATMGQRPYMMGYLSVTVLY 268 >UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G492_9FIRM Length = 378 Score = 126 bits (316), Expect = 1e-27, Method: Composition-based stats. Identities = 50/311 (16%), Positives = 101/311 (32%), Gaps = 20/311 (6%) Query: 17 MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTLNAI 73 M +GF + +A LG + A E+ L I Sbjct: 72 MVPDGDYSKYTIGFCGMTLNNEYHIIVANAVQQACNALGIKCEIQAGSQHASVEEQLTII 131 Query: 74 DSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPM-DTVPLVMMA 132 ++ + G G ++ + + + + ++ VI +D + ++ K + +P Sbjct: 132 ENYVSQGVDGIILVPAASEGLISALQECESANIPVINLDTKLDDSTLKTLGKDIPFYGTD 191 Query: 133 ATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQI 192 G+ G+E+ + V T ++ R G +D KA + Sbjct: 192 NYVGGQLVGEEVAQMYPDGCKTAILRGVQGQTNDD-----DRYNGFLD--KAGDV--VDL 242 Query: 193 YQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGI 252 + + + A +++ + +++ +I ND +G +A + G I Sbjct: 243 VAEQHANWETDQGYTAIQNIIQANKDLQ--VIYCENDLMGIGAYQAVDEAGLT-DQIKIF 299 Query: 253 GINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLI 312 +GV L F + P G + A + T LI Sbjct: 300 SYDGV--TEGLQYVVDGKFVSTCAQQPIKMGKLGVANMAKIFAGKDA--ESYIDTGCELI 355 Query: 313 TRDNFKEELEK 323 T +N K+ LE+ Sbjct: 356 TSENAKQTLEE 366 >UniRef50_UPI0001B4C057 putative D-ribose-binding protein component of ABC transporter n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4C057 Length = 325 Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 55/312 (17%), Positives = 101/312 (32%), Gaps = 20/312 (6%) Query: 10 AIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEK 68 A G +++A + + +G V + +F + K G +VI A D Sbjct: 25 ACGRGGNGAKTADGKQITIGLAVANLQADFFNQIKQSVTAEAKKKGIKVIVSDARGDAAT 84 Query: 69 TLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPL 128 +N I + + V A + V+ VD GK Sbjct: 85 QVNQIQDFISRQVSAIIYIPAGATAAGVPVKAANRAKIPVVTVDRNPPGEPGKS-----F 139 Query: 129 VMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFP 188 + + G + KE +G + T R G ALK A P Sbjct: 140 IASDSVAAARTLGNYVVKESGGKGQLAILQGQIGTTPQ-----VDRQKGFGQALKNA--P 192 Query: 189 EKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAAD 248 ++ A+ + ML HP + ++ G D+ LG +A + G K Sbjct: 193 GIKVVSQQPADWAQDKAYSVSQDMLQAHPGID--ILWGQADAMALGAAQAVKASGSKKKH 250 Query: 249 IIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTD 308 +I +G +G ++ L + +++ G S + + P ++ Sbjct: 251 LI-VGFDG--DIAGLKAVRRGTVDATMVQQTRKMGRMSVNTAVDIIKGKKVP--AQQLQP 305 Query: 309 VVLITRDNFKEE 320 L+T + K+ Sbjct: 306 AFLLTSKDKKKA 317 >UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RZI4_9CLOT Length = 347 Score = 126 bits (315), Expect = 1e-27, Method: Composition-based stats. Identities = 56/298 (18%), Positives = 112/298 (37%), Gaps = 23/298 (7%) Query: 23 AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI-AVPDGEKTLNAIDSLAASGA 81 E+ K GF P+F + ++ + G E+I I A D +K ++ ++ L G Sbjct: 65 KEHYKFGFAATTMNNPFFHAIQEAIEEVVDENGDELIVIDAQNDAQKQISMVEDLLTQGI 124 Query: 82 KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141 +C D + + + + V+ D + +++ GE Sbjct: 125 DLLFLCPIDSASIKSSLEQCGKAGVPVVNFDTDVYDVDLVN----TIIVSDNYYAGELVA 180 Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201 +++ K++ + S V +T+ + +R G D KA G+ +I D Sbjct: 181 EDMMKKL------PEGSKVCILTSPSAEACIKRQNGFKD--KADGY--FKIVSEIDGKGD 230 Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261 + A +L +P++ +ND + +G V+A E Q K D++ G++G Sbjct: 231 TATSLGIAEDVLQGNPDL--GAFYAINDPSAIGCVQALESQ--KKTDVLVYGVDGQPMGK 286 Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 + + SP G +S Y ++ + + LI ++N E Sbjct: 287 QAISE--GTMEATAAQSPINIGKESVAAAYKILSGESVEKNI--LVPTFLIDKNNVTE 340 >UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ASV8_RUBXD Length = 338 Score = 125 bits (314), Expect = 2e-27, Method: Composition-based stats. Identities = 47/305 (15%), Positives = 101/305 (33%), Gaps = 18/305 (5%) Query: 14 AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP--DGEKTLN 71 + E +L +V + ++ T A A + LG + Sbjct: 35 TSCGGGGGEGEGYRLALIVGVTGDEFYTTMECGARAAARKLGARLNVQGPEEFSPAAQTP 94 Query: 72 AIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMM 131 ++++ S +I D + A D+ V+ VD + + + Sbjct: 95 ILNAVVQSNPDAILIAPTDRTAMVGPIQSAVNQDIPVVLVDTTIEKEE----IALARISS 150 Query: 132 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ 191 + G G+ L +++ +G ++ + T +R G +A+K +P+ + Sbjct: 151 DNVEGGRMAGEALAEQIGGKGK-----VLLISVKPGISTTDQRKQGFEEAIKQ--YPDIE 203 Query: 192 IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 251 ++D A S L HP++ I G N + G G K + Sbjct: 204 YLGTEYCNDDPTQAASITTSTLQAHPDLAG--IFGANVFSGQGAGTGVRQAG-KRDQVSV 260 Query: 252 IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311 + + +++ + + P+ G + ++ ++ EP T Sbjct: 261 VAFDAS--PTQVEDLRRGNLDVLIAQHPNDIGRRGVQIAVRYLESGEEPENKQITTGFTT 318 Query: 312 ITRDN 316 +TRDN Sbjct: 319 VTRDN 323 >UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F8A2_SACEN Length = 334 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 51/306 (16%), Positives = 109/306 (35%), Gaps = 20/306 (6%) Query: 24 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEVIK-IAVPDGEKTLNAIDSLAASGA 81 +G EP+ + KA + + F+V A D K ++ +++ Sbjct: 47 SKYTIGMSQANLAEPYRVRMDEDIRKAAEKVPQFDVQFADAAKDNSKQVSDVENFMTKKV 106 Query: 82 KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141 +I + + +V KA + V+ +D + + +IG + G Sbjct: 107 DLLMISPNEAAPLTDVVKKAYNEGIPVVVLDRKVEGE-----AFTTYIGADNVQIGRQAG 161 Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201 + + +G + + ++ + A R G M+ + + + ++ + Sbjct: 162 EYFKNTLLPQGGKIVQLKGLSGSTP----AAEREKGFMEGIAGS---KIEVVDTADGEWE 214 Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261 +++L HP+++ + ND G A + G K D+ +GI+G+ S Sbjct: 215 RSVGQQKMDALLKAHPDIQ--AVYAQNDPMAEGAWLAAQAAGRK--DLKFVGIDGLPIES 270 Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEEL 321 KA G + P G ++ E + PK + L+TR+N + Sbjct: 271 GGIKAVEQGRLSATNLYP-TGGEEAVEAARKLLIDCQPVPKEQTL-PTELVTRENAAQVY 328 Query: 322 EKKGLG 327 + G Sbjct: 329 TRLNQG 334 >UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridium RepID=B8I2K0_CLOCE Length = 333 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 57/299 (19%), Positives = 115/299 (38%), Gaps = 26/299 (8%) Query: 24 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAK 82 + + +G + + + A K +LG E+ I D +N ++++ + G Sbjct: 52 KKIVVGMTLYSLKNEFTVRLSNAAKKKAAELGVELKIYDGNYDPNTQINQVETMISDGVD 111 Query: 83 GFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQ 142 ++ D K + V KA ++ VI V+ + + K V GE + Q Sbjct: 112 AIILNPQDAKACAVAVDKAAAANIPVIGVNTRVDSEK-----LTSYVGSKDVYAGELEMQ 166 Query: 143 ELYKEMQKRGWDVKESAVMAITANELDTAR-RRTTGSMDALKAAGFPEKQIYQVPTKSND 201 + ++ +G ++ + +A+ R+ G + LK +P+ ++ T + Sbjct: 167 AIADKIGGKGN------IVILDGPLGQSAQLERSEGIQNVLKK--YPDIKVLAEKTANWS 218 Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV-DAV 260 A + L ++ +V ND LG +A E K DI IG++G+ DA+ Sbjct: 219 RSEAMTVMENWLQAFDKID--AVVAENDEMALGARKAIEA---KKLDIPTIGVDGITDAL 273 Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 + K ++ G K+ E+ + ++ D +T+DN E Sbjct: 274 DAVEKGT---LIATIFQDGAGQGSKALEIAVAKAKGENVDKEYW--IDFEPVTKDNVAE 327 >UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Bacteria RepID=D1AQM7_SEBTE Length = 326 Score = 125 bits (313), Expect = 2e-27, Method: Composition-based stats. Identities = 56/320 (17%), Positives = 115/320 (35%), Gaps = 20/320 (6%) Query: 2 HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-K 60 + TKA A G A ++ K+G L+ P +F + DKA + E+ Sbjct: 20 KQETKAEGAAGNTAETKEAKK----KIGVLIPGPVG-YFVAVREGIDKAAAENNVEITYS 74 Query: 61 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK- 119 A D K L+ ++ L + I D V A ++ ++A + + + Sbjct: 75 DAGWDASKQLSQVEDLISKKVDLIAIAAVDSNAAKTAVRMANEANIPILAFTNAIGDKEN 134 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 G+ + V + G+ G+ + ++G V V+ R G M Sbjct: 135 GEYEGLITYVGQNEVETGKLTGELAKSLLGEKGGKV----VLIEGRPGTSPQINRRKGVM 190 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 +AL ++ T + + A ++ ++ + +I+ +D++ +G A Sbjct: 191 EALDTN--KNFEVVYTQTSNWEKEQALKIVEDLIQKNQTID--VIIAQDDNSAIGAGMAL 246 Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 + K I+ IG+ G L+ ++ G+ S GY + ++ + Sbjct: 247 KEANLK-DKILVIGLGGS--TEGLNAVKSGLIDGTTYMSAVEEGYTAITAAVKYLNGEKV 303 Query: 300 PPKFTEVTDVVLITRDNFKE 319 P V + + N + Sbjct: 304 EP--VTQMKQVEVNKSNVES 321 >UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RSF4_9CLOT Length = 315 Score = 124 bits (312), Expect = 3e-27, Method: Composition-based stats. Identities = 50/292 (17%), Positives = 104/292 (35%), Gaps = 21/292 (7%) Query: 29 GFLVKQPEEPWFQTEWKFADKAGKDLG-FEVIKIAVPDGEKTLNAIDSLAASGAKGFVIC 87 G P+F + ++ + G + + + D EK I + G + + Sbjct: 37 GATYMTRNNPYFDVLNEGIEEVVEANGDILLTRDPLQDQEKQNEQIQEMIDEGIQMLFLN 96 Query: 88 TPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKE 147 D + + R + +I VD + + ++ + G+ ++ K Sbjct: 97 PVDWEKVQPALDACREAGVGIINVDTVVKDRD----SVISIIETDNYQAGQLCALDMMKR 152 Query: 148 MQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFD 207 E+ ++ + + R G +D + Q+ + +I + Sbjct: 153 K-------DEAKIVILDNPIQTSITNREQGFLDTIADNH--NYQVVYREAAAGEIEVSSH 203 Query: 208 AANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQ 267 +L + ++ +I+G ND T LG + A + + ++ GI+G + Sbjct: 204 VMADLLRR--DISFDVILGGNDPTALGALAALQQA-RREEGVLIYGIDGSPDFKAILDV- 259 Query: 268 ATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 G+ SP G K++E Y ++ D EP + +ITRDN E Sbjct: 260 -GYVTGTSAQSPRSIGRKAAETAYRYL--DGEPVEKYISMPSTMITRDNLHE 308 >UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CKL2_9FIRM Length = 348 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 51/304 (16%), Positives = 111/304 (36%), Gaps = 11/304 (3%) Query: 19 QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLA 77 + ++ +G + P+F + ++L E+ ++ A D +N I + Sbjct: 48 TVSEGDSFLIGVASPNNKVPYFSKLVEGMTDLQEELNVELDVQDAQDDTNTQINQIQTFI 107 Query: 78 ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP--MDTVPLVMMAATK 135 A G ++ + I + ++ ++ VD + + K +D + V + Sbjct: 108 AEGCDLIIMMPVQLESLIPIAMECNEAEIPIMTVDRKLSASDPKDVGVDLITHVGCDDVE 167 Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195 G +QG+ +++ + G + + R G + L P +I Sbjct: 168 GGRKQGELVHQLLGDEGSIALIQGTL-----GASSQVLRQQGLEEYLSENA-PGIEIVAA 221 Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255 D A + L + + + IV + + LG V A + IG + Sbjct: 222 QNSDQDQSQAITVTQNFLTRFAKGEIDAIVAQDPYSALGAVDAIKSASRDELLGTVIGYD 281 Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315 V + KA+ YGS L +P G + ++ Y + + E + T++ ++ + Sbjct: 282 LPSEVLDSIKAKD--MYGSTLQAPYDMGALTLQVAYQCLTEGSEEIEANTYTEIPVVYIE 339 Query: 316 NFKE 319 N +E Sbjct: 340 NARE 343 >UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter n=4 Tax=Alphaproteobacteria RepID=Q98J19_RHILO Length = 335 Score = 124 bits (312), Expect = 4e-27, Method: Composition-based stats. Identities = 49/317 (15%), Positives = 94/317 (29%), Gaps = 18/317 (5%) Query: 2 HKFTKALAAIGLAAVMSQSAMAEN-LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI- 59 +F A G + + S AE+ L + V P+F + G + Sbjct: 24 REFLLTSVAAGAMVLAAPSVFAEDKLTILGSVPNLGFPFFVHMLNEIKAEAQAQGVNLTE 83 Query: 60 KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 K I++ VI D + + +A + V+ +D + + Sbjct: 84 SDGQNSATKQTADIEAALVQKVNAIVISPLDVNALAPAIEEAVKAGVPVVTIDRRVDGVQ 143 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 G + V K GE + + A R G Sbjct: 144 GI----LAHVGADNVKGGEAEASAMVAAFPNGAKLFHLQG-----QPGAGPAIDRNKGVH 194 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 + L + I++ T + A + L + K I+ ND LG + A Sbjct: 195 NVLDPLKDKYQIIFE-QTANFARAEALSVTEAGLAANG--KPDAIICANDDMALGALEAC 251 Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 D+ G + + L + G++ P + ++ + E Sbjct: 252 --AARNFTDVKIYGFDAL--PEALVAVRDGKLAGTVEQFPGQQSRTAVQIAVAYAKNKTE 307 Query: 300 PPKFTEVTDVVLITRDN 316 P + + ++I +DN Sbjct: 308 PKEKLVLLTPIVIGKDN 324 >UniRef50_B2SY92 Periplasmic binding protein/LacI transcriptional regulator n=7 Tax=Burkholderia RepID=B2SY92_BURPP Length = 317 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 59/324 (18%), Positives = 106/324 (32%), Gaps = 27/324 (8%) Query: 1 MHKFTKALAAI-----GLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG 55 + F ++ AA+ GL+ + + +A A LK+G ++ P+F T K + A +G Sbjct: 11 LKTFARSTAALATLAFGLSFIAAPAAQAAPLKIGMTFQELNNPYFVTMQKALNDAAASIG 70 Query: 56 FEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQ 114 V+ A D K ++ ++ + ++ D + V A+ A Sbjct: 71 ATVVVTDAHHDVSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVTSAKK------AGVVV 124 Query: 115 FVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRR 174 V GE + L K + G V + + R Sbjct: 125 VAVDANANGPVDSFVGSKNYDAGEMACEYLAKSIGGSG------EVAILDGIPVVPILER 178 Query: 175 TTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLG 234 G AL A P ++ + A +M+ HP +K + +ND +G Sbjct: 179 VRGCKAALAKA--PGVKLVDTQNGKQERATALSVTENMIQAHPNLKG--VFSVNDGGSMG 234 Query: 235 GVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWV 294 + A E G DI ++G + + F + P + + Sbjct: 235 ALSAIESSG---KDIKLTSVDGAPEAIAAIQKPNSKFVETSAQFPADQVRIALGIALAKK 291 Query: 295 AKDVEPPKFTEVTDVVLITRDNFK 318 P DV +I + N K Sbjct: 292 WGANVPKTIP--VDVKMIDKSNAK 313 >UniRef50_B2IIE3 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Rhizobiales RepID=B2IIE3_BEII9 Length = 314 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 50/314 (15%), Positives = 112/314 (35%), Gaps = 11/314 (3%) Query: 8 LAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI--AVPD 65 A LAA+M+ +A AE +G ++ ++ + + +G ++I A D Sbjct: 5 FTAAVLAALMAGTASAE--TIGVSMQNFDDNFQTLLRQGLQARASQVGGVTLQIEDAQAD 62 Query: 66 GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDT 125 + LN +++ A+ +I D S I A A+ + ++ ++ + N P + Sbjct: 63 IARQLNQVNNFIAARVDAIIITLTDTSAASGITAAAQKAGIPLVYLNLEPENINRLPKNQ 122 Query: 126 VPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAA 185 V T G + + ++K+G + + + +R RT+ + L A Sbjct: 123 A-YVGSKETDAGRLGAEAACQLLKKKGKAGQAQIYILMGDLAHQASRDRTSAVKETLAAG 181 Query: 186 GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK 245 I + + A D + + + I +D +G ++A + G Sbjct: 182 ECKGVTIADERSAAWMRTNAMDVTTNWITTGRPID--AIFANSDEMAIGAIQALKAAGVS 239 Query: 246 AADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTE 305 D+I +G+N L + + ++ + + + Sbjct: 240 KNDVIVVGVNAAQ--DGLVAMEDGDLHVTVFQNAKGQSASALDAAVALARGKSV--DRQV 295 Query: 306 VTDVVLITRDNFKE 319 + L+T +N + Sbjct: 296 MVPFELVTPENMAK 309 >UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ERG9_9FIRM Length = 355 Score = 124 bits (311), Expect = 4e-27, Method: Composition-based stats. Identities = 56/315 (17%), Positives = 113/315 (35%), Gaps = 19/315 (6%) Query: 15 AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDG-EKTLNAI 73 A S+ + LK+GF W E + K + G+E+I EK + + Sbjct: 57 AKASEDGGEKKLKIGFSESTYSGAWRVAEVEDVTKYAEMNGYELIMTNADSNIEKQIGDV 116 Query: 74 DSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAA 133 + L A VI D + + + VI +D Q+++ K K D + + Sbjct: 117 EDLIAQKCDLIVIVPVDANAVAPAFEACKSAGIPVIDMDTQYLDGKWKE-DFITTIRSDQ 175 Query: 134 TKIGERQGQELYKEMQKRGWDVKESAVMAITANELDT-ARRRTTGSMDALKAAGFPEKQI 192 + G+ + + + ++ V+ IT N + A+ R+ G + + A ++ Sbjct: 176 YQQGQGCAEWTVGHVGDK-----DTTVLEITGNPGQSDAQNRSRGFNEYV--ADHSNIKV 228 Query: 193 YQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA-ADIIG 251 A + ++ + +I +D LG + + G K D+ Sbjct: 229 I-QQNGEWSRATAQEVVQNVAQSGQKFD--VIYCHSDEMALGALLGLKQAGLKPNEDVWI 285 Query: 252 IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311 + ++G + KA G+++ G + + + A D ++ Sbjct: 286 VAVDGQKEALDAIKADE---IGAIITCTPKGGDVLFDCINKYFAGDELEEEYFVHQST-- 340 Query: 312 ITRDNFKEELEKKGL 326 IT +N E E +G Sbjct: 341 ITTENVDELYEVEGF 355 >UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-binding protein n=3 Tax=Bacteria RepID=C3RLD7_9MOLU Length = 321 Score = 124 bits (311), Expect = 5e-27, Method: Composition-based stats. Identities = 52/299 (17%), Positives = 97/299 (32%), Gaps = 22/299 (7%) Query: 21 AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA-VPDGEKTLNAIDSLAAS 79 A + G P+F+ KA + G +I + + D +K I L Sbjct: 36 ATVGQQRFGATYMTMNNPFFEVINNEIKKAVEANGDVLITLDPILDVDKQNEQILDLIDQ 95 Query: 80 GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139 + D K + A+ + VI VD + + G Sbjct: 96 RVDAIFVNPIDAKKIEIGLKAAKKAKIPVIVVDAPIYDESLVNCS----IASNNYDAGVL 151 Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199 +++ + ++ + +A R G +D + + Q+ Sbjct: 152 CAKDMM-------SKRDHAKIILLEHATAKSAVERIQGFLDTIASN--ANYQVINRADCD 202 Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259 I A ML + P+V +++ +ND + LG + A E + +++ G++G Sbjct: 203 GQIEIAMPTMKQMLKETPDVD--VVMALNDRSALGALAAIES--MEIDNVLVYGVDGSPD 258 Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318 V EL + SP G + + + K V LI+RDN Sbjct: 259 VKELIN--TGLIQATAAQSPVKMGQLAYQKAKALLENKKIEKKIE--VPVELISRDNIS 313 >UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Clostridiales RepID=B8I0K4_CLOCE Length = 342 Score = 124 bits (310), Expect = 5e-27, Method: Composition-based stats. Identities = 54/296 (18%), Positives = 100/296 (33%), Gaps = 13/296 (4%) Query: 19 QSAMAENLKLGFLVKQPEEPWFQTEWKFADKA-GKDLGFEVIK-IAVPDGEKTLNAIDSL 76 S + + +GF E W A + GF++I A E + A+ Sbjct: 43 DSGSNKLITIGFSQVGAESDWRVANTASMKSALSEKNGFKLIFADAQQKQENQIKAVRDF 102 Query: 77 AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136 + I ++ +A+ D+ VI VD + V K Sbjct: 103 ISQDVDVIAIAPVTETGWETVLGEAKDADIPVIIVDRMIKVSDDSLFSC--WVGSDFQKE 160 Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196 G + L M+++G K++ V+ RT G D +K + I Sbjct: 161 GVNAAEWLVNYMKEKGKTDKQNVVVLQGTIGSSAEIGRTKGFGDTIKK--YDNFNILAQQ 218 Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF-KAADIIGIGIN 255 T + S L Q+ ++ +++ ND+ G + A + G D+ + + Sbjct: 219 TGEFTQAKGQEVMESFLKQYNDID--VVIAQNDNMAFGAIDALKAAGKAPGKDVTIVSFD 276 Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311 V A A S+ +P +HG + +E+ + + K V + V Sbjct: 277 AVKAA--FKSMIAGDMNVSVECNP-LHGPRVAELAKKLMNDEKV-EKIQYVDEKVY 328 >UniRef50_B2JDH5 Periplasmic binding protein/LacI transcriptional regulator n=83 Tax=Proteobacteria RepID=B2JDH5_BURP8 Length = 321 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 61/317 (19%), Positives = 103/317 (32%), Gaps = 24/317 (7%) Query: 5 TKALAAIGLAA--VMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-I 61 T A AA+ L + +A A LK+G ++ P+F T K + A +G V+ Sbjct: 22 TLAFAAVMLGTPLLAPAAADAAPLKIGMTFQELNNPYFVTMQKALNDAAASIGATVVVTD 81 Query: 62 AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121 A D K ++ ++ + ++ D + V A+ A Sbjct: 82 AHHDVSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVTSAKK------AGAVVVAVDANA 135 Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181 V G+ + L K + G V + + R G A Sbjct: 136 NGPVDSFVGSKNFDAGQMSCEYLAKAIGGSG------EVAILDGIPVVPILERVRGCKAA 189 Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241 L A FP ++ + A +M+ HP +K I +ND +G + A E Sbjct: 190 L--AKFPNVKVVDTQNGKQERATALSVTENMIQAHPNLKG--IFSVNDGGSMGALSAIES 245 Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301 G DI ++G + + F + P + + P Sbjct: 246 SG---KDIKLTSVDGAPEAITAIQKPNSKFIETSAQFPRDQIRLAIGVALAKKWGANVPK 302 Query: 302 KFTEVTDVVLITRDNFK 318 DV L+ +DN K Sbjct: 303 TIP--VDVKLVDKDNAK 317 >UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Corynebacterium matruchotii RepID=C5VEK6_9CORY Length = 325 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 59/301 (19%), Positives = 104/301 (34%), Gaps = 21/301 (6%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSL 76 + + A + F + P+F + A K +LG + + A D N + + Sbjct: 40 TTTGSASAKTITFALSTQANPFFVQMRESAQKKADELGLAINFQDAADDSATQSNQLANA 99 Query: 77 AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136 AASG +I D + V + + V+AVD NA + + Sbjct: 100 AASGTGVVIINPTDSDAMAPAVQQLVDEKIPVVAVDRAVNNA-----NVASYIASDNETG 154 Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196 G++ + L + G ++ +R R G + LK P ++ Sbjct: 155 GKQAAKVLSDAINGEG-----EILVLQGKTGSSASRERGKGFDEGLK--DNPNIKVVAKQ 207 Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256 T + D ++L HP VK I ND LG + A + D+ IG +G Sbjct: 208 TAEFERAKGLDVTTNLLQAHPNVK--AIFAENDEMALGAIEALGSK--AGKDVKVIGFDG 263 Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316 + L + Y S+ P ++ + + K +VV T++N Sbjct: 264 AE--DALKAIKDGRMYASIAQQPVKMAEQAVIEASKLLKGETATKKMQ--VEVVAATKEN 319 Query: 317 F 317 Sbjct: 320 V 320 >UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic sugar-binding n=4 Tax=Vibrionaceae RepID=Q1Z3C1_PHOPR Length = 355 Score = 124 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 54/319 (16%), Positives = 105/319 (32%), Gaps = 21/319 (6%) Query: 9 AAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADK-AGKDLGFEVIKI-AVPDG 66 + L A + A + ++G + ++ + A K E+I + A D Sbjct: 56 GLMALVACGGEKADSNVTRIGVAIPNFDDTFLVNMKDSMSAYAAKQDNLELIFVDAKEDT 115 Query: 67 EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTV 126 K L I + G ++ + + ++++ ++ + D V Sbjct: 116 VKQLGQIQNFIIQQVDGIILVPVNTDATQPMTDDILKAGIELVYLNRRPTYLP----DGV 171 Query: 127 PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAG 186 V + GE Q + G ++ + + ++ A RT G D K Sbjct: 172 AYVGSEELRFGEEQAKYAASH--SDGGNIG----IIMGMMTVEAAILRTQGVEDFFKEK- 224 Query: 187 FPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA 246 PE I + T + + + K +I+ ND LG ++A G K Sbjct: 225 -PEYNIIRKQTALWQRSQGMVVMENWI--NSGDKLDIIISNNDDMALGAIQALRAAG-KL 280 Query: 247 ADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEV 306 D I IG++ L + ++ + + + + K P Sbjct: 281 DDTIVIGVDAT--PDGLMAIKNGALDATVFQDGRSQARGAIDAALSGINK--TPRDKITW 336 Query: 307 TDVVLITRDNFKEELEKKG 325 L+T+DN E K+G Sbjct: 337 IPAELVTKDNLAEFEAKQG 355 >UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geobacillus RepID=A4IPB9_GEOTN Length = 318 Score = 123 bits (309), Expect = 6e-27, Method: Composition-based stats. Identities = 70/337 (20%), Positives = 130/337 (38%), Gaps = 42/337 (12%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAE----------NLKLGFLVKQPEEPWFQTEWKFADKA 50 + K TK + + M+ A ++ ++K P+++ A A Sbjct: 2 IKKKTKLFSTAVVLTCMALLAGCGGSKGASGGGGEERVAVVLKTLSSPYWKYVEAGAKAA 61 Query: 51 GKDLGFEVIKI---AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMK 107 GK+LG +V + A + + +N I+ V+ P ++ A + Sbjct: 62 GKELGVDVTVVGPNAESEVMQQINMIEDQLNQSPGALVVSPSQPDTVVPVLETAT---VP 118 Query: 108 VIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANE 167 V+ +D K + + + G G+ L +QK V I+ Sbjct: 119 VLLIDT-----DAKLKNKTSFIGTENYEAGYEGGKLLSSLLQK------GDKVAIISGAL 167 Query: 168 LDTARR-RTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVG 226 +TA R G+ AL+ AG I +D A ++L ++ +VK + Sbjct: 168 GNTATDERVKGAKAALEEAG---MVIVAEQPADSDKTKAMSVMENILQKNNDVKG--VFA 222 Query: 227 MNDSTVLGGVRATEGQGFKAADIIGIGING-VDAVSELSKAQATGFYGSLLPSPDVHGYK 285 ND LG +RA E +G D+ IG +G ++AV + + G++ +P GY+ Sbjct: 223 ANDDMALGVLRAVEAKGL---DVKVIGTDGTLEAVESILDGK---LAGTIAQNPYKMGYE 276 Query: 286 SSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELE 322 + + + + V +IT+DN +E+LE Sbjct: 277 GVKNALAAINGEKVDKRINS--GVEVITKDNAQEKLE 311 >UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Proteobacteria RepID=MOCB_RHIME Length = 309 Score = 123 bits (308), Expect = 8e-27, Method: Composition-based stats. Identities = 62/322 (19%), Positives = 114/322 (35%), Gaps = 21/322 (6%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEV- 58 M KF +AA L + + + +G + ++ + + K L G ++ Sbjct: 1 MKKFIIGIAAAVLVSTAAHAE-----TIGASMAVFDDKFGTLLRNGMEDYAKTLDGVDLQ 55 Query: 59 IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 I+ A+ D K + I + A+G ++ D + + A + ++ V+ + VN Sbjct: 56 IEDALNDVAKQQSQIQNFIAAGVDAIIVQPVDTDATTVMSKLAADAGIPLVYVNREPVNI 115 Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 P V G Q +E+ K + +G AV+ + AR RT Sbjct: 116 DTLPEKQA-FVASNEVDSGTLQTREICKLLDGKGK-----AVVIMGELSNQAARMRTKDI 169 Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238 D L +I Q T + D + L ++ ++ ND +G ++A Sbjct: 170 HDVLATDQCKGIEIVQEQTANWQRTQGADLMTNWLSA--GIEFDAVIANNDEMAIGAIQA 227 Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATG-FYGSLLPSPDVHGYKSSEMLYNWVAKD 297 + G ++ I G+DA + A A G S+ G S + + Sbjct: 228 LKAAGRSMDSVV---IGGIDATDDALAAMAAGELDVSVFQDAVGQGKGSIDAALKLSKGE 284 Query: 298 VEPPKFTEVTDVVLITRDNFKE 319 K L+T+ N E Sbjct: 285 AVERKIY--IPFELVTKANLAE 304 >UniRef50_C0C383 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C0C383_9CLOT Length = 336 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 52/293 (17%), Positives = 107/293 (36%), Gaps = 18/293 (6%) Query: 26 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLAASGAKGF 84 GF V + P+F T +A + G+ +I K D I + A G Sbjct: 52 YVFGFSVIDMQNPYFITLEGATREAVESGGYRMITKDPASDAAAQAAQIQEMIAEGIDAV 111 Query: 85 VICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQEL 144 +C D + + + + +++I VD Q + + G G++L Sbjct: 112 FLCPVDWEEITDSLKALKDAGVRIINVDSQVKEME----YVDAYIGSDNHNAGFICGEDL 167 Query: 145 YKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPG 204 ++ + + ++ R TG +A+ A ++ + Sbjct: 168 IEK------RPDGGKIAILECPTQNSINDRITGFEEAIADAE-KGFEVVAREDTGGEFDR 220 Query: 205 AFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELS 264 A +AA +L ++P++ I+ ND +G + A K D+I G++G + + Sbjct: 221 ALEAAEKILKENPDIT--AIMCGNDQIAVGAMTAVNLA--KMEDVIIYGVDGSPDIKKEF 276 Query: 265 KAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317 K G+ SP G +++ + + + + +V +I +DN Sbjct: 277 KKAGCQIAGTAAQSPINMGKTAAKTGISILKGEEF--EREVYEEVFMINKDNV 327 >UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Tax=Proteobacteria RepID=B5XQK7_KLEP3 Length = 317 Score = 123 bits (308), Expect = 1e-26, Method: Composition-based stats. Identities = 62/313 (19%), Positives = 110/313 (35%), Gaps = 19/313 (6%) Query: 10 AIGLAAVMS--QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDG 66 A + A MS +A A + + +F K A A K G + VI + + Sbjct: 15 ATTMLASMSFISAASAAGPTYALVQINQQALFFNLMNKGAQDAAKASGKDLVIFNSNDNP 74 Query: 67 EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTV 126 +AI++ G KG ++ D V +A ++ VIA+D Sbjct: 75 VAQNDAIENYIQQGVKGILVAAIDVNGIMPAVKEAAAANIPVIAIDAVLPAGP-----QA 129 Query: 127 PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAG 186 V + + G GQ +QK ++ + + +R G + LK+ Sbjct: 130 AQVGVDNIEGGRIIGQYFVDYVQKEMGGQARLGIVGALNSAIQN--QRQKGFEETLKSN- 186 Query: 187 FPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA 246 P+ I V N A AA +++ +P++ I + +LG + A E QG Sbjct: 187 -PKITIANVVDGQNVQDKAMTAAENLITGNPDLT--AIYATGEPALLGAIAAVENQGR-Q 242 Query: 247 ADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEV 306 DI G + +S L P+ G ++ L + + P + Sbjct: 243 KDIKVFGWD--LTAKAISGMDGGYVTAVLQQDPEKMGAEALNALNSITSGKTVPKTI--L 298 Query: 307 TDVVLITRDNFKE 319 ++T+ N Sbjct: 299 VPATVVTKANVDS 311 >UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasmic component) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C460_9PLAN Length = 321 Score = 123 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 56/306 (18%), Positives = 104/306 (33%), Gaps = 19/306 (6%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDSL 76 S S G + P+F + K + G VI A + K N + L Sbjct: 32 SDSTADSGRLFGASFQTMNNPFFVDLGEGLKKELEANGDRLVILDAQFNSLKQKNDLSDL 91 Query: 77 AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136 G + + + + +A + +I VD A + + V + Sbjct: 92 ILQNVAGIFVNPVNWEGLKGSLLEANRKKVPIIIVDAPVKKADEELIVCT--VASDNVRA 149 Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196 GE Q L K K + ++ + + R G L+ PE +I V Sbjct: 150 GELAAQALAKVNPK-------ARLVVLHLSVNKACIDRVAGFKTELEK--HPEMKILDVQ 200 Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256 GA ++ ++P++ + +ND LG + A + K + + ++G Sbjct: 201 EAQGTTEGARPVMRDLIGRYPDLD--AVFAINDPNALGVISALDSAN-KLDQVTIVTVDG 257 Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316 A + QA + + P G ++E + + + V LIT +N Sbjct: 258 SQA--GIKAIQAGKLHSTSAQFPREIGKIAAEKMLAHLKGEPVEKDVK--VRVELITAEN 313 Query: 317 FKEELE 322 ++ LE Sbjct: 314 AEQYLE 319 >UniRef50_C6V848 D-ribose-binding periplasmic protein n=11 Tax=Gammaproteobacteria RepID=C6V848_ECOBD Length = 357 Score = 123 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 63/313 (20%), Positives = 123/313 (39%), Gaps = 21/313 (6%) Query: 10 AIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPD---G 66 A+ L A +S SA+A++L L + K + ++QT + A K+LG + + D Sbjct: 50 ALSLLACVSSSALAKDLNLPVVSKGFQHEFWQTVKMGTEAAAKELGDKTSYVGPADETQI 109 Query: 67 EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTV 126 + + +++ A G ++ D + +V A +KV+ D + V Sbjct: 110 AEQIQLVENAMAQKPNGLLLAALDANALAPLVETANSRGIKVVTFDSGINSDIP-----V 164 Query: 127 PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAG 186 V K G + L ++ +G + ++A A +A R+ G M+ +K Sbjct: 165 SFVATNNRKAGAQAADALASQVNNKG----KVGIIAHVAGT-SSAIERSEGFMERMKE-K 218 Query: 187 FPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA 246 +P+ ++ V D A D M+ +P++ I G N+ + LG A + Q K Sbjct: 219 YPDIKVLPVQYSDGDPQKAMDKTIDMIQANPDLAG--IYGTNEGSTLGVANAIDSQNLK- 275 Query: 247 ADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEV 306 + IG + +A+ K G ++ GY+ + L ++ + Sbjct: 276 GKVKVIGFDSTEAIINFLK--NGVIQGFVVQDAYQIGYQGIKTLNAALSGQAVEKEID-- 331 Query: 307 TDVVLITRDNFKE 319 V + +N Sbjct: 332 IPVKFVNAENINT 344 >UniRef50_A1WJM2 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Proteobacteria RepID=A1WJM2_VEREI Length = 330 Score = 123 bits (307), Expect = 1e-26, Method: Composition-based stats. Identities = 63/307 (20%), Positives = 116/307 (37%), Gaps = 21/307 (6%) Query: 27 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLAASGAKGFV 85 K+G +K P+F + + A GK+LG+EV+ A +K ++ ++ L G K + Sbjct: 37 KIGVSMKTLSAPYFAAQMEAAKARGKELGYEVLATDAQGKLQKQISDVEDLVTRGVKLLI 96 Query: 86 ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145 I D + V A +KV+ +D + V V + + G G + Sbjct: 97 INPADSEGLVNAVNNASANGVKVVVIDSTL----NPRANFVTQVQSSNSINGALVGHWVI 152 Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA-----LKAAGFPEKQIYQVPTKSN 200 +E+ + + + + R G + L+ G + + Sbjct: 153 EEVGNKSLKIA----LLSGEKGNPVGQERRLGVLSGIIEAQLRKFGKADLTVVGQGWGHW 208 Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260 + G A +LV + ++ +++G NDS VLG RA E G ++ DA Sbjct: 209 NDEGGLKAMEDLLVANKDIN--MVLGENDSMVLGARRAIESAGRTGILLVA----AADAQ 262 Query: 261 SELSKAQATGFYG-SLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 E G YG + L P + + ++ V +V+ +T IT+ N + Sbjct: 263 KEALALIKQGKYGVTGLNDPALVARTAIDLGVKVVKGEVKDVPKQTLTTPAAITKGNVDK 322 Query: 320 ELEKKGL 326 K + Sbjct: 323 FYNPKAV 329 >UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport protein n=1 Tax=Rhodopirellula baltica RepID=Q7UNV9_RHOBA Length = 438 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 47/305 (15%), Positives = 113/305 (37%), Gaps = 18/305 (5%) Query: 24 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTLNAIDSLAASG 80 + L + K ++Q+ A++AG+++G ++ D ++ +N + + Sbjct: 140 KELHFAVIPKGTTHIFWQSVKHGAEQAGEEIGAKITFRGPSKENDRDEQINVVQGFLNAR 199 Query: 81 AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140 G ++ D V +A + V+ D G D V V + G+ Sbjct: 200 VDGILLAPLDADALVRPVKEASRAGVPVVIFDSGLNTDPG---DFVSYVATDNFEGGKLA 256 Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIY-QVPTKS 199 G+ + + ++G DV ++ ++ +R G + ++ A + ++ Sbjct: 257 GEAMANALGEKGGDV----ILLRYEQGSESTHQREEGFLYSI--AEYSNIRVLSSDQYAG 310 Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259 A D A ++L + + + + T G +RA + A + + + D+ Sbjct: 311 TTTESAIDKAQALLNRFGDEADGICTVC-EPTAEGALRALRERKL-AGKVKLVTFDSSDS 368 Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 + E A +L P GY++ + + + + P +F + V ++ E Sbjct: 369 LRESLSA--GEVNAIVLQDPVAMGYQAVKTMAAHLRGET-PEQFIDTGVFVATAKNQDDE 425 Query: 320 ELEKK 324 + + Sbjct: 426 NIARL 430 >UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding protein n=4 Tax=Pseudomonas RepID=Q48J93_PSE14 Length = 308 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 47/295 (15%), Positives = 103/295 (34%), Gaps = 16/295 (5%) Query: 4 FTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IA 62 F K A+ L V SQ A A ++G + + ++ + ++A + ++ A Sbjct: 3 FCKLFIAVLLL-VSSQWAAAS-YRIGVTIARVDDNFMTYVRSGLEEAARKENVQLQFEDA 60 Query: 63 VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122 D + +N + + ++ D + + A M ++ V+ + Sbjct: 61 QGDVVRQINQVQGFLSQKVDAVIVLPVDTSATANMTRAAVEAKMPLVYVNRHP--DERVL 118 Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182 V V + G+ Q + L ++M +G + + + ++ R+ G L Sbjct: 119 PKGVTTVASNDIEAGQLQMRYLAEKMGGKG-----TIALIMGDLAQNSTHDRSEGVKQVL 173 Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242 K +P I + T D ++ L+ IV ND +G A + Sbjct: 174 K--DYPGITIVEQQTAEWQRNKGMDLTSNWLLAGRTFD--AIVANNDEMAIGAAMALQQA 229 Query: 243 GFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 G ++ +GI+G+ L+ + S+ P + + + + Sbjct: 230 GKAKGEVAIVGIDGL--PDGLAAIKRGMLAASVFQDPKAQATTALQSAIKMIKGE 282 >UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8H8H8_ARTCA Length = 322 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 54/319 (16%), Positives = 106/319 (33%), Gaps = 22/319 (6%) Query: 11 IGLAAVMSQS------AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAV 63 + L S A+ +G +V ++P K + G ++ I + Sbjct: 19 LTLTGCAGSSNATSSGEAAKTYNIGVVVLDLQDPDLAHMTDAMKKTADEKGVKLNITDSK 78 Query: 64 PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPM 123 D LN ++ L ++ D + ++ + + +F A+G + Sbjct: 79 KDVGSELNQVEDLLTRQVDAVIMQPLDGDASQNAAKRVIAANIPLFILSTEF--AEGSDV 136 Query: 124 DTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALK 183 + + T G+ Q + L K M G V + V + + RR G + Sbjct: 137 GYKSYIGVDDTVAGQMQAEYLNKLMPNGGNLVFAAGVYGASWTD-----RRKNGFDKTIN 191 Query: 184 AAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQG 243 +I A L + P + +V ND +G A G Sbjct: 192 E----NFKIVAEFQAKGSRDDAKRNMEDTLQRFPSGQIDAVVANNDEMAIGAASAIADAG 247 Query: 244 FKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKF 303 A +G++G + L + ++ G K+ E++ +++ ++ Sbjct: 248 RTAEFKAVVGVDGTEPA--LQDIEGGTMSATVRQDSAGQGVKAVEVVTDFLNGGNVDNRY 305 Query: 304 TEVTDVVLITRDNFKEELE 322 T LIT+DN E L+ Sbjct: 306 T--LPFTLITKDNLSEFLK 322 >UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales RepID=C5EPY8_9FIRM Length = 356 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 59/319 (18%), Positives = 109/319 (34%), Gaps = 27/319 (8%) Query: 14 AAVMSQSAMAEN---LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE------VIKIAVP 64 A V S++A N + W + + L E I + Sbjct: 34 AQVSSEAAKPSNDGGYVVALCNYSIGNSWRAQMEQEFVAEAEKLKAEGVVSEYYITNSND 93 Query: 65 DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124 D K ++ + L G VI P + V +A +KV++ D+ + Sbjct: 94 DINKQISDMQDLITKKVDGIVITAASPTALAPAVEEATEAGIKVVSFDNVVDTDE----- 148 Query: 125 TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA 184 V V + T+ G L K++ +G V + + + + R G+ + K Sbjct: 149 QVATVGIDQTEFGRVCADWLVKKLDGKGKIVVLNGIAGTANDTM-----RWNGAEEVFKQ 203 Query: 185 AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF 244 +P+ +I S D A SML +PE+ + + G + A G Sbjct: 204 --YPDIEILGSANASWDYAQGKAAMESMLSAYPEIDG--VWSQGGAMTQGAIDAFIAAGR 259 Query: 245 KAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFT 304 K + G NG A+ + + G P G ++ + + + P + T Sbjct: 260 KLVPMTSEGNNG--ALRAWIENRDNGLSCIAPSDPTYSGAEALRTVIKSLDGEEVPKRVT 317 Query: 305 EVTDVVLITRDNFKEELEK 323 D+ ++T DN + + Sbjct: 318 --LDIPVVTEDNVDKYYRQ 334 >UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protein n=23 Tax=Yersinia RepID=A4TI53_YERPP Length = 319 Score = 122 bits (305), Expect = 2e-26, Method: Composition-based stats. Identities = 57/329 (17%), Positives = 111/329 (33%), Gaps = 20/329 (6%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 M K L G+ MS SA AE LK+GF + +F ++ K+ G+ +I Sbjct: 1 MKKRLIGLLLAGVTISMSVSA-AEPLKIGFANRTLNGAFFNGLTEYMKIHAKEKGYTLIT 59 Query: 61 -IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 A D K + ++ + + G ++ DP+ G I A+ + + +D Sbjct: 60 TDARGDLNKQIADVEDMLSQGINYLILNPQDPQAGLRITEIAKRAGVPTVILDSDI---- 115 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 + V K G+ + + + + + R + Sbjct: 116 ALEAPVITRVQANNAKNNNLIGEYAVGQFGDK----PMNCIFLSGNQGNLVGQARRDNFL 171 Query: 180 DALKAAGFPE-----KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLG 234 + A + + D G A ++V + K + D LG Sbjct: 172 LGVAEAQLRKYNRTNVNFLSQGWGNWDQQGGLKAMEDIIVAQGD-KINCVYSEMDDMALG 230 Query: 235 GVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWV 294 +RA + K ++ +G E K + +PD+ E++ + Sbjct: 231 AIRALKAAN-KLDNVKVYAHDGYKKGLEAVKK--GELQATASNNPDLLTSTVLEVIGQYQ 287 Query: 295 AKDVEPPKFTEVTDVVLITRDNFKEELEK 323 A P + + +LIT+DN + ++ Sbjct: 288 AGQTSFPDYVYI-PSILITKDNVDKYYKE 315 >UniRef50_A9CF36 ABC transporter, substrate binding protein (Sugar) n=4 Tax=cellular organisms RepID=A9CF36_AGRT5 Length = 309 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 59/325 (18%), Positives = 114/325 (35%), Gaps = 19/325 (5%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEV- 58 M KF A L + + +G + ++ + K+L G + Sbjct: 1 MKKFIIGAAMSVLLGTAAHAE-----TVGVSMALFDDNFLTVLRNGMLDYSKELKGVTLQ 55 Query: 59 IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 ++ A D K + I + AS ++ D +A+ A + ++ V+ Q VN Sbjct: 56 VEDAQNDVAKQQSQIQNFIASKVDAIIVNPVDTDATAAMSKLAADAKIPLVYVNRQPVNV 115 Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 P D V T G + +E+ + + +G +AV+ + AR RT + Sbjct: 116 DSLP-DGQAFVASDETVAGTLEAKEVCRLLGGKG-----NAVIMMGELSNQAARMRTQSA 169 Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238 D LK + + T + D + L ++ ++ ND +G ++A Sbjct: 170 KDVLKTDECKGISVVEEQTANWQRTQGSDLVTNWLSS--GIEFNAVIANNDEMAIGAIQA 227 Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 + G + G++ L+ QA ++ G + + V D Sbjct: 228 LKAAGKDMKSYVVAGVDATQ--DALAAMQAGDLDVTVFQDAAGQGKGALDAALKLVKGDK 285 Query: 299 EPPKFTEVTDVVLITRDNFKEELEK 323 K L+T +N K+ + K Sbjct: 286 IEKKVY--IPFQLVTPENVKDYVAK 308 >UniRef50_UPI0001B51147 putative ABC transporter substrate-binding protein n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B51147 Length = 354 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 54/314 (17%), Positives = 107/314 (34%), Gaps = 24/314 (7%) Query: 17 MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG--FEVIKIAVPDGEKTLNAID 74 + + + +GF Q + W + A + K+ V D + + I+ Sbjct: 51 AADKKRGKKVTIGFAGPQADHGWLNAINEQAKRRAKEYQDVSLVSTEGSNDTAQQIGQIE 110 Query: 75 SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134 +L VI D K + + KA + V+ +D F + + + Sbjct: 111 TLINKKVDVLVILPADGKALTQVGLKAMESGIPVVNLDRVFASPQAYRC----WIGGDNY 166 Query: 135 KIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194 +G G+ + ++++ + V + L+ R+RT G DALK +P + Sbjct: 167 GMGLNAGRYIGEQLKGKKNA---KVVELAGLDNLELTRQRTAGFDDALK--NYPNIKKVG 221 Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254 + +L H + +D +G RA + G D + +G Sbjct: 222 RQAAEFTVESGQSKMAQLLQAHSGFD--ALWNHDDDQGVGAERAIQQAGR--DDFLMVGG 277 Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK-------DVEPPKFTEVT 307 G + KA T ++L P + ++ ++E P + Sbjct: 278 AGAKRAMDAIKADNTVLKATVLYPP-TMAASAIDLARALGQGNGVGGLAELEIPASLTLY 336 Query: 308 DVVLITRDNFKEEL 321 V +T++N E L Sbjct: 337 SAV-VTKENVDEYL 349 >UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=B0G317_9FIRM Length = 345 Score = 121 bits (304), Expect = 2e-26, Method: Composition-based stats. Identities = 52/292 (17%), Positives = 103/292 (35%), Gaps = 18/292 (6%) Query: 27 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLAASGAKGFV 85 K+GF E P+F T + E+I K D + + I + G + Sbjct: 62 KIGFSGIDMENPYFLTLESAIKEEVDGKNCELIVKDPKTDPDMQASQIQEMIDEGINAII 121 Query: 86 ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145 + D + + + + D+K++ VD Q + G G++L Sbjct: 122 LSPVDWEKITPSLEALKEADVKIVNVDTQVKEMD----YVDAYIGSDNYNAGVLCGEDLI 177 Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205 K V + ++ R TG + L A +I S + + Sbjct: 178 KRC------PDGGKVAILECPTQNSVNERITGFEETLAKAE-NGFEIVAREDTSGEFQKS 230 Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSK 265 +AA +L ++ ++ I+ ND +G A + I+ G++G + + K Sbjct: 231 LEAAQKILSENSDI--VAIMCGNDQMAVGAKTAMNVA--EQGQILIYGVDGSPDIKKELK 286 Query: 266 AQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317 G++ SP G ++ + N + + E +V +I ++N Sbjct: 287 KTENQIAGTVAQSPISMGKDAANTVLNILNGKDYEKEIKE--NVFMINQENV 336 >UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=bacterium Ellin514 RepID=B9XK02_9BACT Length = 330 Score = 121 bits (304), Expect = 3e-26, Method: Composition-based stats. Identities = 55/322 (17%), Positives = 119/322 (36%), Gaps = 29/322 (9%) Query: 10 AIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV------ 63 A+ L+++ A ++ + + K ++Q A KA ++L + IK+ + Sbjct: 12 ALFLSSICLSCAADKSYTIAVIPKGTTHEYWQCIHAGAIKAQRELQEKGIKVDLIWKGPL 71 Query: 64 --PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121 D ++ + +++ G V+ D + A V A + V+ D K Sbjct: 72 REDDRDQQIQVVENFMTRRVSGMVLAPLDNQAMVAPVNNAIRAKIPVVIFDSALKTDK-- 129 Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181 V V K G+ + + + ++ +G + ++ A + R G MD Sbjct: 130 ---YVSFVATDNYKGGQLAAERMGQLLEGKG-----NVILLRYAVGSASTEEREAGFMDT 181 Query: 182 LKAAGFPEKQIYQ-VPTKSNDIPGAFDAANSMLVQ-HPEVKHWLIVGMNDSTVLGGVRAT 239 LK + FP ++ A+ A+ ++L + EV I + + +A Sbjct: 182 LK-SKFPNIKVISSDQHAGATRETAYQASQNLLNRFGHEVNG--IFCPCEPPTVAMAKAL 238 Query: 240 EGQGFKAADIIGIGIN-GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 G + +G + G +V +L G ++ +P GY + + + Sbjct: 239 RDIGKAGGKVKMVGFDAGSQSVIDLKNGDVQGL---VVQNPLRMGYLGVITMVQHLQGEK 295 Query: 299 EPPKFTEVTDVVLITRDNFKEE 320 + T V ++T +N ++ Sbjct: 296 VEKRID--TGVQIVTPENMEQA 315 >UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHH7_9FIRM Length = 330 Score = 121 bits (302), Expect = 4e-26, Method: Composition-based stats. Identities = 57/303 (18%), Positives = 100/303 (33%), Gaps = 22/303 (7%) Query: 17 MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGK--DLGFEVIKIAVPDGEKTLNAID 74 A AE L +G ++ E + + K D +I A +K + +D Sbjct: 37 ADTEAAAEELVIGCTLQNLSEEFMTMLQGAMELQLKNYDNVKLIINDAESQSDKQASQLD 96 Query: 75 SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134 S A G +I D ++ V + VI +G+ V + Sbjct: 97 SFVAQGVDAVIISPVDADALASAVKTVVDAGIPVITCSADVTGDQGQ-----VWVGSSNE 151 Query: 135 KIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194 GE + + + +++ +G + A + R G LK +P+ +I Sbjct: 152 NGGEIEMKYVAEKLGGKGKIAVLRGPLGAFAEQG-----RFAGYETVLK--DYPDIEIVF 204 Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254 T + A ++L E+ IV ND LG + A + G K I GI Sbjct: 205 DQTGNWQREEAMALIENLLTAGTELD--AIVCQNDGMALGALEAVKAAG-KKDQITITGI 261 Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314 + + V L +A + G + +M + L+T+ Sbjct: 262 DAI--VDALDSIKAGELDATCFQDAIGQGTNALDMAVKAARGETVERMDIPF---ELVTK 316 Query: 315 DNF 317 DN Sbjct: 317 DNV 319 >UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Clostridiales RepID=C2L0R0_9FIRM Length = 333 Score = 121 bits (302), Expect = 5e-26, Method: Composition-based stats. Identities = 53/294 (18%), Positives = 110/294 (37%), Gaps = 22/294 (7%) Query: 27 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFV 85 +G + ++ + ++ K+ G+ + ++ A D K L + V Sbjct: 60 TIGVSLLNSTHVFYNSIQTAMEEQAKEYGWTLDVQDAAGDANKQLGQVQDFITKKVDAIV 119 Query: 86 ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145 I + +++ A + V +D + + GKP V V K G+ + + Sbjct: 120 IAPTNSAGSKSMIELAEKAGIPVFTMD---IASDGKP---VTHVATDNKKGGQLAAEYVV 173 Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205 + K+ V IT +E+++ R TG D LK P+ ++ V S D A Sbjct: 174 NNILTE----KKGNVAVITYSEIESCVDRETGFTDYLKENA-PDIKVVDVQNYSGDQQKA 228 Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV-DAVSELS 264 D +ML+++ + ++ + D +G + + A IG +G + V+E+ Sbjct: 229 ADVMQNMLLKNDNID--VVFCVGDPAAIGALSSITAA---NAATKIIGYDGNPEGVAEIK 283 Query: 265 KAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318 K + + P G + E + + + + + +I N K Sbjct: 284 K--GGNWVADVAQDPAGIGKTTLEAIKKHLEGEKVDSEI--LIAPYIIDAKNAK 333 >UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=B2IJW8_BEII9 Length = 314 Score = 120 bits (301), Expect = 6e-26, Method: Composition-based stats. Identities = 56/313 (17%), Positives = 109/313 (34%), Gaps = 11/313 (3%) Query: 11 IGLAAVMSQ--SAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI--AVPDG 66 I LAAVM+ S A +G + ++ + G+ L +++ A D Sbjct: 4 ILLAAVMAINFSCSAGAESIGVSMSAFDDNFLTVLRNALIAHGQSLPNVNVQMEDAQNDV 63 Query: 67 EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTV 126 + + + + ASG ++ D AI A + ++ V+ Q N P +T Sbjct: 64 ARQQSQVQNFIASGVSAIIVNPVDTDATEAISKLAADAKVPLVYVNRQPANVDRLP-ETQ 122 Query: 127 PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAG 186 + G Q QE+ + ++ RG + V+ + +R+RT D + Sbjct: 123 AFIASDEAVSGTLQAQEVCRLLKARGKGKSANVVVMMGQLSNQASRQRTKDVHDVIATPE 182 Query: 187 FPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA 246 ++ + T + A + ++ L ++ ++ D +G ++A G Sbjct: 183 CAFMKVVEEQTANWQRTEAMNLMSNWLSA--GIQFDAVIANADEMAIGAIQAMRSAGLPV 240 Query: 247 ADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEV 306 D I GI+G EL + ++ G + + T Sbjct: 241 KDYIVAGIDGGRDGIELMRQ--GYLDVTVFQDAAGQGAGALDTALMLARGKKT--DRTIW 296 Query: 307 TDVVLITRDNFKE 319 LIT N + Sbjct: 297 VPFQLITPTNVAD 309 >UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J7A7_NOSP7 Length = 318 Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats. Identities = 56/305 (18%), Positives = 98/305 (32%), Gaps = 19/305 (6%) Query: 5 TKALAAIGLAAVMSQSAMAENLK--LGFLVKQPEEPWFQTEWKFADKAGKDLGFE---VI 59 A AI ++A + E K +GF + PW E + +I Sbjct: 7 FSAYVAIAISAFSLSGCIREKTKKIVGFSQTENIGPWRIAETNSIKEEAAKHKKTYDFLI 66 Query: 60 KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 A K I+ L A + + + + + AR + + +D + Sbjct: 67 TDAQGQTSKQFADIEDLIARQVDVIFLAPREYEGLTPALEAARAAKIPIFLIDREAAGRP 126 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 G+ V + G R G+ L K + V+ + A R G Sbjct: 127 GEHF--VSFLGSDFIAQGRRVGEWLAKATDGKASIVELTGTAG-----SSVAIDRAKGFR 179 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 +A+ A +P +I T A +++ + ND LG ++A Sbjct: 180 NAI--ATYPNMKIIATQTADFSRAAAVRVMENIIQA-KGSDITAVYAHNDEMALGAIQAL 236 Query: 240 EGQGFKAADIIGIG-INGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 + G K + +G I+G A E G S+ +P G + + A Sbjct: 237 KSAGMKPGKDVMVGSIDGQKAALEAIIRGELGV--SVESNPR-FGPLVFATMEEYFAGKK 293 Query: 299 EPPKF 303 PP+ Sbjct: 294 IPPRI 298 >UniRef50_C0C4T0 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C4T0_9CLOT Length = 334 Score = 119 bits (299), Expect = 9e-26, Method: Composition-based stats. Identities = 59/294 (20%), Positives = 108/294 (36%), Gaps = 17/294 (5%) Query: 28 LGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVI 86 +GF+V+ +F + K + EV + D ++A+++L VI Sbjct: 52 VGFIVQDLTINYFLSVVKGVEDFQDKYDMEVQVIDGHSDAPTQVDAVENLITQEVDCIVI 111 Query: 87 CTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYK 146 C D A V +A+ + VI ++ A + + G G+ + Sbjct: 112 CPVDTVAPEAAVKEAQAAGIPVITWSEKIEGADA-------WIAVNNYDYGFENGKIAGQ 164 Query: 147 EMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAF 206 + +++ VM + E + R G MD L + P+ + V + + G Sbjct: 165 WILDNLDKQEDAKVMYVYVKENEQLIERGEGMMDGLASLA-PDAETVAVQSGNTTESG-M 222 Query: 207 DAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKA 266 +A + L +HP++ +IV NDS LG A G A + G + + E Sbjct: 223 EAVETTLAKHPDLN--VIVCSNDSVALGAYEAMVSAGKSDAKVCITGQDADEKNLEYISQ 280 Query: 267 QATGFYGSLLPSPDVHGYKSSEMLYNWVA-KDVEPPKFTEVTDVVLITRDNFKE 319 T G++ G + + + V P + T +T DN K+ Sbjct: 281 D-TILKGTVDIGAYNQGELLCQSVEKVLKEGKVADPIYVSFTP---VTMDNVKD 330 >UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDF0_9FIRM Length = 333 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 57/298 (19%), Positives = 107/298 (35%), Gaps = 20/298 (6%) Query: 25 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLAASGAKG 83 +L +GF PW + ++ + G I A D + I+ + A Sbjct: 49 DLTVGFAQSGNPNPWMVALTESMQQSADEYGVNYIYTDANDDMATHVANIEDMLAKDLDI 108 Query: 84 FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143 VI + A++ +A + VI +G+ + TV +G+ Sbjct: 109 LVIAPMEDTGLEAVLDEAAEKGVPVILSAR---TTQGEYVTTV-------YSDQAWEGER 158 Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203 + + ++ D K + I + R G D + A +P+ +I T + Sbjct: 159 CAELIGEKIPDAKVVELRGIEGT--SSVAGREKGFRDVM-AEQYPDMEIVVEQTANFSRQ 215 Query: 204 GAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF-KAADIIGIGINGVDAVSE 262 A DA ++L + ND LG V+A + G DI +GI+G Sbjct: 216 EAMDAMANILQAKGPDAIDAVYCHNDEMALGAVQAIKDAGLTPGEDIQVVGIDGQK--EA 273 Query: 263 LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320 ++ G++ SP HG E++ + + + + +IT++N E Sbjct: 274 WELVKSGEMLGTVQCSPK-HGPTVFEVIQKILDGETVQKE--TIVPDQVITKENVDES 328 >UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4U114_YERKR Length = 322 Score = 119 bits (299), Expect = 1e-25, Method: Composition-based stats. Identities = 63/322 (19%), Positives = 110/322 (34%), Gaps = 24/322 (7%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI- 59 M AL+ +A + + + P F + + K LG I Sbjct: 8 MTTLAIALSTFAFSANAAPKGKDAPVTILVSALSYSFPHFVFLQEQLEAEAKTLGNVKII 67 Query: 60 -KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 K + I++ G G +I D + ++ A + V+ +D Sbjct: 68 RSDGQLSAPKQIADIEAAIVQGVDGIIIAPADATALAPVLRTAIKEGISVVTIDRPV--- 124 Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 G P + + V +RQG+ + K + + + TA R+ G Sbjct: 125 NGVP-EVIANVAADNLIGAQRQGEAVEKLFPQGATIINLQGI-----PGDKTANDRSKGV 178 Query: 179 MDALKAAGFPEK-QIYQVPTKSNDIPGAFDAANSMLV--QHPEVKHWLIVGMNDSTVLGG 235 D L PE + T + ++L +P +IV ND + LG Sbjct: 179 HDTLDK--HPELYKFVAEQTARFNRDQGLSVTENLLTGLANP---PTVIVAGNDDSALGA 233 Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATG-FYGSLLPSPDVHGYKSSEMLYNWV 294 +A E +G K I I G D ++ KA G G++ P G ++ ++L +++ Sbjct: 234 AQAVEARGLKGK----IAIFGYDGSTDALKAVRDGVLTGTVDQYPGKQGREAVKILTDYI 289 Query: 295 AKDVEPPKFTEVTDVVLITRDN 316 P + V IT N Sbjct: 290 RTGARPATVDVLVSPVAITSKN 311 >UniRef50_B9L479 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L479_THERP Length = 357 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 53/302 (17%), Positives = 107/302 (35%), Gaps = 23/302 (7%) Query: 19 QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA--VPDGEKTLNAIDSL 76 A + + + K P+F+ K ++ K+LG +A D + I+ L Sbjct: 69 TVAPGTKITIAMVPK-LVHPFFEDCRKGGEQKAKELGVTFEYVAPQQADPALQVKIIEDL 127 Query: 77 AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136 I +PK ++A+ + ++ D N++ V + Sbjct: 128 IRKKVHAISISPNEPKSVEPVIAEGMKQGILMMTFDADSPNSQ-----RVMYIGTDNKAA 182 Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196 G+ G+ + K + RG + + +R G + + P Q+ V Sbjct: 183 GKTMGETMAKLLNGRGKVGIITGGLGALN-----LNQRIEGFKEGV----GPNIQVVDVQ 233 Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV-RATEGQGFKAADIIGIGIN 255 +D+ + +ML HP++ V L V ++ E Q +I Sbjct: 234 ATDDDLQKGLSVSEAMLRAHPDLNGIACVSATGGPTLAQVLKSPEFQDRIGKLVIV---- 289 Query: 256 GVDAVSELSKAQATGF-YGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314 D + E +A G +++ P G + + Y+ + +PP T V ++T+ Sbjct: 290 AFDDLEETKRAIQEGIIAATMVQRPVQMGVLTVQWAYDILTGKAKPPFKNIDTGVTVVTK 349 Query: 315 DN 316 +N Sbjct: 350 EN 351 >UniRef50_C0CHG6 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CHG6_9FIRM Length = 331 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 59/308 (19%), Positives = 106/308 (34%), Gaps = 24/308 (7%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSL 76 S A + + K GF+V E ++QT + K+LG E I A D N + L Sbjct: 44 SADAGSGSHKCGFVVGSFEHVFYQTIRDGIESKAKELGMEAIVTDAELDPNIATNKVQDL 103 Query: 77 AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136 A G + + D + A + + D + + ++ V K Sbjct: 104 TAQGCEAIALSCNDAAGVKPAIENADAEGVAMFTFD---CSTDSEAINC--FVGTDNYKG 158 Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196 G+ GQEL K V I + R G++D LK ++ + Sbjct: 159 GQLGGQELLKY------SEDGDTVGIICYPTASSCLDRQNGALDVLKDE---DRTVVYDN 209 Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256 D A + +ML +P++ + + D G + A + G +D IG +G Sbjct: 210 DYQGDANKAQEIMENMLTANPDM--AAVFCVGDPAATGALAAIKAAG---SDCKIIGFDG 264 Query: 257 VDAVSELSK---AQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLIT 313 E + + +P + G E + ++ + + D +I Sbjct: 265 NPEAKEAISDTEGNGKWWVSEIAQNPTLIGETIVEQMQKYLDEGKVDAAEIPI-DPYVID 323 Query: 314 RDNFKEEL 321 N +E+ Sbjct: 324 ASNVADEM 331 >UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-binding protein n=4 Tax=Pseudomonas RepID=Q883G4_PSESM Length = 310 Score = 119 bits (298), Expect = 1e-25, Method: Composition-based stats. Identities = 52/306 (16%), Positives = 98/306 (32%), Gaps = 20/306 (6%) Query: 19 QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP-DGEKTLNAIDSLA 77 S A+ L +G V + +F + + GK G ++I + + ++ I+ L Sbjct: 22 GSTWAKELTIGLAVANLQADFFNQIKQSVEAEGKARGVKIITVDAQGNSSTQVSQIEDLI 81 Query: 78 ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137 + V A+ + VIAVD +A G V Sbjct: 82 TRQIDALIYIPAGATAAGVPVKAAKAAGIPVIAVDRNAPDAPGDTFIASDSV-------- 133 Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT 197 G + E + D K + R G + LK GFP ++ Sbjct: 134 --AGAKALAEYVGKVTDGKGRIAILQGQLGTTPENDRAKGFQEGLK--GFPGLKVVAEQP 189 Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV 257 F A +L + P + + G D+ LG +A + ++ V Sbjct: 190 AEWAQDKGFAVAQDLLQRDPNIT--VFFGRADAMALGAAQAVKVANLSQPVVVVGFDGDV 247 Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317 + ++ ++ G + + A P + ++ + VL T+DN Sbjct: 248 AGLKAVASGV---LQATMTQQTQKMGRMAVASALDLKAGKAVPKE--QLLETVLTTKDNV 302 Query: 318 KEELEK 323 L++ Sbjct: 303 APFLQQ 308 >UniRef50_Q7NV24 Probable ribose ABC transporter, substrate binding protein n=1 Tax=Chromobacterium violaceum RepID=Q7NV24_CHRVO Length = 330 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 63/310 (20%), Positives = 111/310 (35%), Gaps = 20/310 (6%) Query: 11 IGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKT 69 IGL + + A ++ ++ + + P++ T K + G+ + E Sbjct: 25 IGLVPLPALPA-----EIAYITAKADLPFWDTVGKGVKAVAEANGYAFSELDSKLSAEMQ 79 Query: 70 LNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLV 129 LN + G VI + K + AR + V + D V V Sbjct: 80 LNNVRQAIDRRVAGIVISPTNSKSAEEALILARRAKIPV-----AIADIGASGGDYVSFV 134 Query: 130 MMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPE 189 + G EL K M+ + W ++ I + + RT G DA+K AGFP Sbjct: 135 KSDNYRGAYDVGTELAKAMKAQNWASGAYGMVTIELSR-KNGQDRTNGFRDAMKDAGFPR 193 Query: 190 KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADI 249 +I K + ML HP ++ + I D V G +RA G K + Sbjct: 194 -EIVLRQMKDYSAEETYRYVKEMLAAHPGLRGFFI--ETDQPVAGALRAIREAG-KEKQL 249 Query: 250 IGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDV 309 + + + + V L K + + P + G ++ L + + PP + V Sbjct: 250 LLVSFDAMPDVVRLLK--SGALVAVGMQQPYLMGSSAAGALVSRLRGH--PPAKEILVPV 305 Query: 310 VLITRDNFKE 319 ++ T N + Sbjct: 306 LVATGRNVDQ 315 >UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothece sp. ATCC 51142 RepID=B1WQL3_CYAA5 Length = 380 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 52/310 (16%), Positives = 114/310 (36%), Gaps = 27/310 (8%) Query: 28 LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-------IAVPDGEKTLNAIDSLAASG 80 + +L K +P++Q + ++LG + + + D +K ++ I L + Sbjct: 80 IAYLFKTRSDPFWQQMEQGVQTVAQELGIKTLVKFTEEKPNTLGDVKKQISTILELIDNN 139 Query: 81 -AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139 G VI D I+ KA +KVI +D + + V + G+ Sbjct: 140 DLDGLVIAPEDSIQLVPIIEKATQQGIKVIVIDTPIDTDQ-----ILTFVTFDNFEGGQI 194 Query: 140 QGQELYKEMQKRGWDVKESAVMAITANE-LDTARRRTTGSMDALKAAGFPE-KQIYQVPT 197 G+ + +++ + + ++ + + + R G ++ LK A +I + + Sbjct: 195 LGEWVIQKLTQSSRRNNKINILILEGSLHEENTIERRQGFLEGLKRANKNYSLEILDLKS 254 Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV 257 + A + L + P + +I+ +D +G A + II G +G Sbjct: 255 ADWETKKAKMITQAWLEKFPTID--VIMAADDQMAVGASEAVQEANKSG--IIITGFDGT 310 Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVT------DVVL 311 K ++ P ++++ N + K+ ++ + +L Sbjct: 311 PYGLNAIK--TGQIDATINQLPRTQISLITQLMINSLEKEQTTLPLCQLIGQEQTENSLL 368 Query: 312 ITRDNFKEEL 321 IT+DN E L Sbjct: 369 ITQDNINEAL 378 >UniRef50_A8RJP3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RJP3_9CLOT Length = 359 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 48/289 (16%), Positives = 97/289 (33%), Gaps = 14/289 (4%) Query: 12 GLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTL 70 A + ++ ++ + P+F + +LG + I + D + Sbjct: 65 TAATSGGDNKADSGMEFVYVTQDSANPYFIQVYDGFQSKCAELGIKTQILDSKYDVATQV 124 Query: 71 NAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVM 130 + ++ G +I D +V +A+ + V A NA+ + Sbjct: 125 SYVEDAVQRDVDGIMISPLDENALKTVVDQAKEKGIVVSAEAQPVSNAQIDGSLDEYNIG 184 Query: 131 MAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEK 190 IG + + E +G + + ++++ RR G D + PE Sbjct: 185 ---YAIGNAAAEWIKAEQGGKG------RALILAQDDVEAVIRRGDGINDGILENA-PEA 234 Query: 191 QIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADII 250 ++ SN S+L+ PEV +I +D T +G A + Sbjct: 235 EVVARQNASNT-DLGMKVTESVLLAKPEVN--VICACDDFTAIGAYEAVSAMQKIPDNFY 291 Query: 251 GIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 G + D E K + + + S P G +E +Y ++ + E Sbjct: 292 IGGCDATDEGKEKMKVENSVYRSSCNLFPYEAGEDLAEAMYKYLTEKQE 340 >UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gammaproteobacteria RepID=B0URZ9_HAES2 Length = 311 Score = 119 bits (297), Expect = 2e-25, Method: Composition-based stats. Identities = 57/308 (18%), Positives = 110/308 (35%), Gaps = 19/308 (6%) Query: 3 KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA 62 K K+ AI AE ++K P++ + + K LG +V A Sbjct: 5 KTLKSCLAILGLVCSVSVYSAE---YAVILKTLSNPFWVAMKEGIENEAKALGVDVDIFA 61 Query: 63 VP---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD--QFVN 117 P D + L + L KG P AKA + ++ +D+ N Sbjct: 62 SPSEGDYQSQLQLFEDLINKNYKGIAFAPLSPANLVMPAAKAYRKGIYLVNLDEKIDIKN 121 Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177 + + + +G + Q + ++ G E A++ A RR G Sbjct: 122 LQKAKGNVEAFITTDNVAVGGKAAQFIVDKLGSEGG---EVAIIEGKAGNASGEARR-RG 177 Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237 + + + ++ D A D A ++L ++P +K + + ND+ +G + Sbjct: 178 AREVFVKSS--SIKLVASQPADWDRIKALDVATNVLSRNPNLKAFYV--ANDTMAMGVAQ 233 Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 A G K I+ +G +GV ++ + ++ P + G K ++L + Sbjct: 234 AVINAG-KQGKILVVGTDGVPEARKMVSERK--LTATIAQDPAMIGAKGLKLLVDAARAG 290 Query: 298 VEPPKFTE 305 + P E Sbjct: 291 KQIPVDVE 298 >UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasmic component) n=2 Tax=Firmicutes RepID=Q97J33_CLOAB Length = 325 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 48/291 (16%), Positives = 97/291 (33%), Gaps = 21/291 (7%) Query: 27 KLGFLVKQPEEPWFQTEWKFADKAGKDLG-FEVIKIAVPDGEKTLNAIDSLAASGAKGFV 85 K G +++ + G V + A D K + I K Sbjct: 45 KFGATYMTTNNRFYEIINDEIRSVVESNGDILVTRDAALDKNKQMQQIYEFIKLKVKAIF 104 Query: 86 ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145 I D K + A+ + VI VD + K V+ G + + L Sbjct: 105 INPVDWKQIKPALIAAKNAGIPVIVVDTPVYDDKLVACT----VISDNYDAGVQCAKYLM 160 Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205 K K +M I ++ + R G +D + A+ + +I + Sbjct: 161 KSKSKAN-------IMLIEHSKAKSGIDRIKGFVDTIGAS--KQYKIVAAGDSEGQLDKT 211 Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSK 265 + ++ +H V I+ +ND + LG + A + G ++ G++G + Sbjct: 212 MSLVDDLIKKHTNVD--AIMALNDPSALGALAALKENGL-LGKVMVFGVDGS--PEAKTM 266 Query: 266 AQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316 + P+ G+ ++E Y+ + + + LI+++N Sbjct: 267 IHDGFMTATSAQFPNKIGHIAAEKAYDILKGKRLKRDV--IVPISLISKEN 315 >UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostridium acetobutylicum RepID=Q97JD5_CLOAB Length = 319 Score = 118 bits (296), Expect = 2e-25, Method: Composition-based stats. Identities = 52/307 (16%), Positives = 105/307 (34%), Gaps = 21/307 (6%) Query: 22 MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE--VIKIAVPDGEKTLNAIDSLAAS 79 ++ ++G + ++ + + K+L V+ A D + + I +L A Sbjct: 30 KSKKYRIGLSIPASDDVFRNKIINAMENEAKNLPDTDLVVVNAKGDPARQKSQISNLVAQ 89 Query: 80 GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139 ++ D L S A + +I+V++ N D V + G Sbjct: 90 KCNAILVLPVDTLLSSDYTQIANDSGIPIISVNNFLKNQD----DAAAYVGSDSITSGIM 145 Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199 + + K++ +G + V+ +TA +RT G L+ +PE +I Sbjct: 146 EAEYAVKQLNGKG-----NVVILKGEPNHETAIKRTEGFKQVLQ--NYPEIKIIDEQYGD 198 Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259 + + K I+ ND +G + A + I + + G+DA Sbjct: 199 WKRTLGMQITENWIK--NGTKFDAILANNDEMAIGAIMALKENNL----INNVFVGGIDA 252 Query: 260 VSELSKAQATG-FYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK-FTEVTDVVLITRDNF 317 + K G ++ + G ++ + Y V + K F VV D + Sbjct: 253 TPDALKLLKEGSLKVTVFQNAAGQGSEAIKAAYKLVKGEKINKKIFVPYELVVPNDADKY 312 Query: 318 KEELEKK 324 + K Sbjct: 313 LGKQSAK 319 >UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSY2_BACS4 Length = 314 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 51/328 (15%), Positives = 106/328 (32%), Gaps = 27/328 (8%) Query: 1 MHKFTKALAA--IGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE- 57 M K L A + + ++ LG + W + A+ K L + Sbjct: 1 MKKVLFLLVASILLIVGCSEDTSGDGETVLGLAMPSATHGWMGALIQNAEDQAKALVEDG 60 Query: 58 ----VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD 113 I + +N ++ L A G V+ + S I + + ++ VD Sbjct: 61 TIDDYIFTTADNPSAQVNNVEDLIAQGVDAIVMLPIESDALSPIALQVEEAGIPLVIVDR 120 Query: 114 QFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 173 + N + V G G+ +++ G V+ I ++ Sbjct: 121 ELTNDAATVV-----VKGDNYGAGVNAGEYFMEQLGGNGK------VVEIAGPSNSVTQQ 169 Query: 174 RTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVL 233 R+ G +A++ + + +I + + ++L PE+ + +D L Sbjct: 170 RSDGFREAIEGS---DIEIVASQSGEFSTETSLQVMENILTSQPEID--AVYTQDDGMAL 224 Query: 234 GGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNW 293 G ++A G+ G V E+ + L SP + + + + Sbjct: 225 GVLQAINEANRT-DIQFITGVAGSKDVYEIIMDDG-LITATFLYSP-LMVKEGVIIGAD- 280 Query: 294 VAKDVEPPKFTEVTDVVLITRDNFKEEL 321 +A +P V +T+DN + Sbjct: 281 LANGEDPDSAEVVVPATPVTKDNVDDHY 308 >UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUB2_9BACT Length = 327 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 51/318 (16%), Positives = 97/318 (30%), Gaps = 25/318 (7%) Query: 8 LAAIGLAAVMSQSA-----MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA 62 + I L + A A + + P+F + + G ++ + Sbjct: 26 CSLIVLVGCEKKPAPDTAGAAGSRFFAVSFQTLNNPFFVDLNDGLKQVIDEHGDRLVTLD 85 Query: 63 VP-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121 K N + + + + + A + AR + VI VD +A Sbjct: 86 AQFSSLKQKNDLSDVIEQKPAAIFLNPVNWESVRATLIAARNAKIPVIVVDAPVPDAD-- 143 Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181 + V G Q L G ++ V + + R G D Sbjct: 144 --LVLAQVASDNVAAGRLAAQAL-------GDARPQAKVAILQYSVNKACVDRVAGFTDV 194 Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241 L A FP I +L + P++ + +ND +G V A + Sbjct: 195 L-AKSFPGATIIARQDVKGTSEATRPVMRDLLGRFPDLD--AVFPINDPGAIGCVSAIDA 251 Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301 G ++ + ++G ++ G + + P G ++ Y+ +A P Sbjct: 252 AGRS-GKVLVVTVDGSREAAQFI--LNGGIHSTSAQFPKKIGSLAAGAAYDHLAGK--PV 306 Query: 302 KFTEVTDVVLITRDNFKE 319 V L+T+ N E Sbjct: 307 DKEIKVPVTLVTKANAAE 324 >UniRef50_B0PGZ6 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PGZ6_9FIRM Length = 374 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 52/311 (16%), Positives = 116/311 (37%), Gaps = 21/311 (6%) Query: 19 QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDG-EKTLNAIDSLA 77 + A+ + G ++ +F + +KA +D G EVI + + ++ I++ Sbjct: 53 PAGGADKIVCGVVLIDMTNQFFVDMIEGGNKAAEDYGCEVIWKSADGNFDNQISLIENFI 112 Query: 78 ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137 G ++ D + ++ KA + I + Q ++T + + Sbjct: 113 EQGVDCILVDPLDSEGLKPVIEKASAAGIPTITMAGQV------DVETNYTTVYNDEENT 166 Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT 197 + K + + G + + R G ++ +P + + PT Sbjct: 167 RIIAEMTAKMIGEEGKTA-----LLYGNKGNLVSDLRQKGYYAGMEK--YPNITVVEQPT 219 Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV 257 + D P AA ++ +P++K I ++D+ L +A + G K +II +G Sbjct: 220 -NWDPPTGMKAAQDLIAANPDLK--AIHCISDAVTLAAYQAVKTAG-KEGEIIVTSYDGN 275 Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317 D L ++ F ++L GY + ++ + K + ++T +N Sbjct: 276 D--DALKAVESGQFTSTVLTGAKKTGYWNIQVALQLASGVRPAEKILNLDTHFVMTDEN- 332 Query: 318 KEELEKKGLGG 328 K + + G+ G Sbjct: 333 KAKFAEMGIEG 343 >UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-binding protein n=82 Tax=Proteobacteria RepID=A3N967_BURP6 Length = 320 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 57/305 (18%), Positives = 113/305 (37%), Gaps = 21/305 (6%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV-----PDGEKTLNA 72 +++ A K+ ++K +F T A + K + + D + Sbjct: 28 ARAETAHKPKVALVMKSLANEFFLTMENGAKEYQKHNASQFDLVTNGIKDETDTASQIRI 87 Query: 73 IDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV-NAKGKPMDTVPLVMM 131 ++ + S V+ D K +V KA + V+ +D++ + VP V Sbjct: 88 VEQMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIVVNIDNRLDPDVLKSKGLNVPFVGP 147 Query: 132 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ 191 K G L K ++ ++ + A++RT G DA+KAAG + Sbjct: 148 DNRKGARMVGDYLAKRLK-----AGDAVGIVEGVPTTTNAQQRTAGFQDAMKAAG---AK 199 Query: 192 IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 251 + V + +I A +ML ++P +K ++ ND+ +G V A G + Sbjct: 200 VVSVQSGEWEIDKGNAVAAAMLNEYPNLK--ALLCGNDNMAIGAVSAVRAAGR-QGKVYV 256 Query: 252 IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEV--TDV 309 +G + ++A+ + K + + +A+ + T V T V Sbjct: 257 VGYDNINAIKPMLKD--GRVLATADQYAAKQAVFGIDTALKALAEHRKQADMTGVVATPV 314 Query: 310 VLITR 314 L+T+ Sbjct: 315 DLVTK 319 >UniRef50_B8ZUE5 Putative D-ribose-binding protein n=2 Tax=Mycobacterium leprae RepID=B8ZUE5_MYCLB Length = 345 Score = 118 bits (295), Expect = 3e-25, Method: Composition-based stats. Identities = 59/298 (19%), Positives = 103/298 (34%), Gaps = 18/298 (6%) Query: 25 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI-AVPDGEKTLNAIDSLAASGAKG 83 L +G P++ +F D+ LG + + A D +K L+ +++L G G Sbjct: 36 KLTIGVSYPTANSPFWNAYTRFIDEGSHQLGVYINAVSAEEDEQKQLSDVETLINQGIDG 95 Query: 84 FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG--KPMDTVPLVMMAATKIGERQG 141 ++ + ++ A ++ V+ VD A G K D V + K G Sbjct: 96 LIVTPQSTSIAPTLLRIATQANIPVVVVDRYPGYAPGQNKNADYVAFLGPNNEKAGSGIA 155 Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201 + M G + A+ R G AL A G ++ Q + Sbjct: 156 E---ALMAGGGSKF----LALGGMPGNSVAQGRKAGLESALTAVGH---RLVQFQYAGDS 205 Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261 AA +ML HP I ND G ++A + I G+D Sbjct: 206 EDKGLAAAENMLQAHPAGDANAIWCFNDKLCQGAIKAVYNANREKEFI----FGGMDLTP 261 Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 + A G Y L + + G +LY + +P + D++ + + N + Sbjct: 262 QAIAAIENGLYTVSLGAHWLEGGFGLAILYRKIHGQ-DPAERMVKLDLLKVDKSNVAK 318 >UniRef50_B1Y299 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y299_LEPCP Length = 318 Score = 118 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 64/329 (19%), Positives = 117/329 (35%), Gaps = 22/329 (6%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAEN-LKLGFLVKQPEEPWFQTEWKFADKAGKDLG-FEV 58 M K+ L A + + A+N L + F+ K ++ ++ ++A ++ G ++ Sbjct: 1 MKKYLTFLFACWVLLSSGSAWPADNKLNIVFIPKSSDQMFWDLMRNGVERAMQEEGQIDL 60 Query: 59 IKIA---VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQF 115 D + + + +G VI D V +A +KV+ VD Sbjct: 61 TWRGPAYNDDTDSQIRILQYYTRAGVDAIVITPTDRSRLVGPVEQAVRMGIKVVVVDSAL 120 Query: 116 VNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRT 175 + G + V G+ ++L + M +RG V+ T + R Sbjct: 121 -DGSGH----LQFVTTDNHASGQLAARQLAELMGQRG-----RVVLLRTVAGSASTDDRA 170 Query: 176 TGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG 235 G +D L A P I A +A+++L + + I +N+S G Sbjct: 171 RGFIDYLSANA-PAISIVADVYGGGSAGKARHSASALLAKSADFD--AIFAVNESATDGM 227 Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295 +RA G IG + + L + G ++ PD GY + + + + Sbjct: 228 LRALREAGLAGRKRF-IGFDSTPFL--LEGLEKKEIDGLIVQDPDRMGYLAIKAVVAALR 284 Query: 296 KDVEPPKFTEVTDVVLITRDNFKEELEKK 324 T L+TR NF+ KK Sbjct: 285 NRPIKESVIH-TGTTLVTRANFRRPEIKK 312 >UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacteria RepID=B2T1S7_BURPP Length = 339 Score = 118 bits (294), Expect = 4e-25, Method: Composition-based stats. Identities = 56/305 (18%), Positives = 104/305 (34%), Gaps = 17/305 (5%) Query: 21 AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDSLAAS 79 A LK+GF + PW E K G++ V+ A K ++ I ++ A Sbjct: 46 ASKTPLKVGFAQTESNNPWRLAETKSFKDIAAKCGWQLVMTDANSSNSKQVSDIQNMIAQ 105 Query: 80 GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDT-VPLVMMAATKIGE 138 V + K + +V +A+ + VI VD + K + + G Sbjct: 106 HVDLLVFPPREEKPLAPVVLQAKKAGIPVILVDRDVDQSVAKAGRDYITFIGSDFIDQGH 165 Query: 139 RQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTK 198 R L K + ++ A R G + + P I + Sbjct: 166 RAADWLVKATGGKAKIIELEGT-----TGASAANDRKKGFDEIIAKN--PGMTIIASQSG 218 Query: 199 SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF-KAADIIGIGINGV 257 ++L HP+V + ND LG + A + G DI + I+G Sbjct: 219 DFARDKGRQVMETLLQAHPDVT--AVYAHNDEMALGAIAAIKAAGKQPGKDIQIVTIDGT 276 Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317 + A G G+ + S G + ++ + + P + +V+D + N Sbjct: 277 KGGMDAI---AAGELGASVQSSPFFGPLACDVAQRYAKGEKI-PTWVKVSDKFY-DKSNV 331 Query: 318 KEELE 322 ++ ++ Sbjct: 332 QQNMQ 336 >UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Bacteria RepID=D1ANT2_SEBTE Length = 330 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 56/289 (19%), Positives = 114/289 (39%), Gaps = 17/289 (5%) Query: 28 LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---PDGEKTLNAIDSLAASGAKGF 84 + ++K P++ + +K G +V IA D ++ L I++L + G K Sbjct: 47 IAIVLKTLSNPFWVEMKEGIEKEAAAQGIKVDIIAASSEEDVQEQLRLIENLLSKGYKAI 106 Query: 85 VICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPM--DTVPLVMMAATKIGERQGQ 142 I P + +A + V+ +D++ + K + V K+G + + Sbjct: 107 GIAPLSPVNTIPAIVEANKKGIYVVNIDEKVDMEQLKKSGGSVLAFVTTDNVKVGAKGAE 166 Query: 143 ELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDI 202 + ++ + G E A++ + RR G+ +A KA + ++ D Sbjct: 167 YIIGKLPEGG----EVAIIEGKSGNASGEFRR-QGATEAFKADS--KFKLVASQPADWDR 219 Query: 203 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSE 262 A D A +++ ++P +K I ND+ LG V+A G K I+ +G +G A Sbjct: 220 SKALDVAANLIQKYPNLK--AIYACNDTMALGAVQAVANAG-KTGQILVVGTDG--APEA 274 Query: 263 LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311 + ++ P + G S ++L + + E +V + Sbjct: 275 RTSIDEGKLNATVAQDPAMIGATSLKILIEAIKDKPQISPDIEAKEVPV 323 >UniRef50_A9HFZ1 D-ribose-binding protein n=1 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HFZ1_GLUDA Length = 330 Score = 117 bits (293), Expect = 5e-25, Method: Composition-based stats. Identities = 56/306 (18%), Positives = 98/306 (32%), Gaps = 26/306 (8%) Query: 17 MSQSAMAEN--LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP---DGEKTLN 71 + +A AE+ K+G V P+F + + K LG +V D K + Sbjct: 32 STAAARAEDSVHKIGVTVGSLGNPFFIAAIRGITQQAKALGPTAPVQSVSADYDIGKQAS 91 Query: 72 AIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMM 131 +DS A+G + D + + +V + V+A D A + Sbjct: 92 QVDSFIAAGNDLVMFNAVDYQAAAPLVRRLHDSGATVVAFDVGAPGADAT-------ITT 144 Query: 132 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ 191 K GE Q + + G V+ + + R G A P + Sbjct: 145 NNVKAGEISCQYIVDRLHGHG------DVVIVNGPPVTALSDRVKGCQSVFAKA--PGIR 196 Query: 192 IYQV-PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADII 250 + G S++V+ +V I +ND T LG A G D Sbjct: 197 LLSSTLDAKGSRDGGLAVGQSVMVRFDKVD--AIFAVNDPTALGVELAARQAGRH--DFF 252 Query: 251 GIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVV 310 ++G V + + T + P ++ + ++ + P + Sbjct: 253 LASVDGSPDVEQEMRGGNTLIAATASQDPFAIATTATRIGFD-IRAGRIKPGIVRLLAPS 311 Query: 311 LITRDN 316 LIT D Sbjct: 312 LITHDT 317 >UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A1TPE5_ACIAC Length = 322 Score = 117 bits (292), Expect = 7e-25, Method: Composition-based stats. Identities = 59/313 (18%), Positives = 103/313 (32%), Gaps = 18/313 (5%) Query: 1 MHKFTKALAAIGLA------AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL 54 M K T+ A LA + + + + + LGF E W + A +D Sbjct: 1 MTKLTRRTLATALACAPVAALLPAAAWAQKPIVLGFSQVGAESEWRTANTESIKSAARDA 60 Query: 55 GFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD 113 G E+ A E + AI S A ++ +A+ + V+ D Sbjct: 61 GIELKFSDAQQKQENQIKAIRSFIAQRVDVIAFSPVVESGWEPVLREAKAAKIPVVLTDR 120 Query: 114 QFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 173 V + + G + G+ L ++M+ DV + A Sbjct: 121 AVNTKD--TSLYVTFMGSDFVEEGRKAGRWLVEKMKDAKGDVNIVELQGTVG--SAPAID 176 Query: 174 RTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVL 233 R G + +KA P+ +I + T + + L K ++ ND + Sbjct: 177 RKKGFEEVVKAD--PKFKIIRSQTGDFTRAKGKEVMEAFLKAE-GRKINVLYAHNDDMAI 233 Query: 234 GGVRATEGQGFK-AADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYN 292 G ++A E G K DI I I+ V A ++ SP + G + + + Sbjct: 234 GAIQAIEEAGLKPGKDITIISIDAVKGA--FEAMMAGKLNVTVECSP-LLGPQLMAAVKD 290 Query: 293 WVAKDVEPPKFTE 305 A P + Sbjct: 291 IKAGKTVPKRIVT 303 >UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Bacteria RepID=ALSB_ECOLI Length = 311 Score = 116 bits (291), Expect = 8e-25, Method: Composition-based stats. Identities = 57/323 (17%), Positives = 119/323 (36%), Gaps = 21/323 (6%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 M+K+ K + L +M ++ + ++K P++ K + K LG V Sbjct: 1 MNKYLKYFSG-TLVGLMLSTSAFAAAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDI 59 Query: 61 IAVP---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV- 116 A P D + L + L+ KG VA+A + ++ +D++ Sbjct: 60 FASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDM 119 Query: 117 -NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRT 175 N K + V +G + + ++ G +V + + R Sbjct: 120 DNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVA----IIEGKAGNASGEARR 175 Query: 176 TGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG 235 G+ +A K A + ++ D A D A ++L ++P +K I ND+ +G Sbjct: 176 NGATEAFKKAS--QIKLVASQPADWDRIKALDVATNVLQRNPNIK--AIYCANDTMAMGV 231 Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295 +A G K ++ +G +G+ +A ++ +P G +++ + Sbjct: 232 AQAVANAG-KTGKVLVVGTDGI--PEARKMVEAGQMTATVAQNPADIGATGLKLMVDAEK 288 Query: 296 KDVEPP----KFTEVTDVVLITR 314 P ++ D +L+T+ Sbjct: 289 SGKVIPLDKAPEFKLVDSILVTQ 311 >UniRef50_A0QZW4 D-ribose-binding periplasmic protein RbsB n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0QZW4_MYCS2 Length = 372 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 52/298 (17%), Positives = 120/298 (40%), Gaps = 21/298 (7%) Query: 23 AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI-AVPDGEKTLNAIDSLAASGA 81 ++ +K+ F V+ P+ + + A++ GK LG +V I A D + N I + A G Sbjct: 89 SDPIKITFSVEGLSHPFLVKQKQLAEETGKRLGAQVNVISANDDVNQQFNDIQTAIAQGT 148 Query: 82 KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141 ++ + A++ +A + + + P + G++ G Sbjct: 149 DALMMMPATTQGLDAVLKQAEAAQIPYFFSQKGMLGVEPASQVLAPY-----SNEGQQLG 203 Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201 + + + +G + + A+++ + + R + + L++ F + + Sbjct: 204 EWVVEHY--KGQEDVKVAIISGIPGDQSSDARVNSFLLPLLRSCNF---NVVANQPGNYR 258 Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261 + AA +ML +P++ L+ G ND LGG+ A + G + D+ +G++G + Sbjct: 259 RGDSEKAAQNMLAANPDID--LLFGANDEAALGGIAALKSSGRQGVDV--VGLDGQTDM- 313 Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 + Q+ +++ P E +++ P V D L+T++ + Sbjct: 314 -FAAIQSGQALATVIHKPTAG--IVVEEAVDYLRGK--PVPEYRVLDEDLVTKETIET 366 >UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FWH4_SORC5 Length = 332 Score = 116 bits (291), Expect = 9e-25, Method: Composition-based stats. Identities = 50/302 (16%), Positives = 105/302 (34%), Gaps = 18/302 (5%) Query: 25 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDG-EKTLNAIDSLAASGAKG 83 + +GF E W K + +++ + +NA++ G Sbjct: 45 EIVVGFSQTGAESSWRIAHSKSIQAEAEKRHVQLLFADGQNVHNNQVNAVNGFITKGVDV 104 Query: 84 FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143 VI + + +A+ + V+ + + V+A+ +TV ++ G R G+ Sbjct: 105 IVIAPQESVGWKPTLKEAKRAGIPVV-LTSRGVDAEEDLYETV--MVADFVWEGRRAGEW 161 Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203 L K+ + + + D A R TG +A+ A P+ +I + Sbjct: 162 LAKQTNGK-----ARIIELVGTPAADVAVMRKTGFAEAI--AKHPDMKIIASQSGDFTRT 214 Query: 204 GAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA-DIIGIGINGVDAVSE 262 ++L H + + ND LG ++A + G K DI+ I I+ V Sbjct: 215 KGKTVMETLLSAHKG-EINAVYAHNDDMALGAIQAIQAAGLKPGQDILVISIDAVKPA-- 271 Query: 263 LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELE 322 ++ +P +HG + + V + P + + + R+ + Sbjct: 272 FEAMMEGKLNATVECNP-MHGPLLFDTIDKIVRGEKVPKR--TIVPGQIFEREQAAAAIG 328 Query: 323 KK 324 + Sbjct: 329 SR 330 >UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinobacteria (class) RepID=Q1ARR7_RUBXD Length = 343 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 58/296 (19%), Positives = 108/296 (36%), Gaps = 22/296 (7%) Query: 26 LKLGFLVKQPEEPWFQTEWKFADKAGK----DLGFEVIKIAVP-DGEKTLNAIDSLAASG 80 ++L + K +++T + A A K ++ + +A D +N + + G Sbjct: 43 IELAVVPKAVGFDFWETVRQGAVCAAKRAEGEVDVQWDGVAQETDVTGQVNLLQNFITQG 102 Query: 81 AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140 G V D K+ + +A + V+ +D + + VP+ ER Sbjct: 103 VDGLVYAATDAKVLHDVTQQALDQGITVVNID----SGTDPQPENVPVFATDNVAAAERA 158 Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSN 200 + L +++ + G V T RT G + LK P+ ++ + + Sbjct: 159 TEYLVEQLGEDGGKVA----FIPFQPGTATNDTRTEGFKNVLKEN--PQVKLVAEQSSES 212 Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260 + A +L HP++ I N+ VLG A G KA +II +G + A Sbjct: 213 NYNRALQVTEDILTAHPDLD--AIYAANEPGVLGAAEAVRSAG-KAGEIIIVGWD--TAP 267 Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316 EL + + +P GY + + T +L+TR+N Sbjct: 268 DELKAVREGVVSALIAQNPFRMGYDGVNAAVKMIRTGEQVEG--GDTGAILVTREN 321 >UniRef50_B7GJK7 ABC-type sugar transport system, periplasmic component n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GJK7_ANOFW Length = 332 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 56/296 (18%), Positives = 118/296 (39%), Gaps = 22/296 (7%) Query: 30 FLVKQPEEPWFQTEWKFADKAGK--DLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVIC 87 + ++ + P+++ + A +AGK D+ E I ++ + ++ AS G ++ Sbjct: 57 LISQEFDNPYWRKIEQGAKEAGKNYDVNIEYIGPLRTSVDEQVKLLEKAIASRVDGIIVQ 116 Query: 88 TPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKE 147 + ++ KA ++ VI +D A + V + G+ G+ + Sbjct: 117 NLKDEAFIPLIDKAISRNIPVITID-----ADAPKSRRIAYVGTNNFEAGQLLGKAVVSR 171 Query: 148 MQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFD 207 ++ +E VM T + + R R G + + A P ++ V + + A Sbjct: 172 VEGE----RELGVMIGT-DTSENQRLRLQGFLSVI--AEHPRLKVVSVASSNISRIQASI 224 Query: 208 AANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQ 267 A ML +HP + ++VG + +G AT+ DI G + V+ E Q Sbjct: 225 QAEQMLRKHPHIS--VMVGTSALDAIGIRMATKN--LHRQDIQIFGFDDVEETIEAI--Q 278 Query: 268 ATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEK 323 +++ P GY + +++ ++ + T + +I R N ++E K Sbjct: 279 QGDIVATVVQKPYDMGYSAVKLMVEHLSGKQIQKE--HFTAIEVIDRQNVQQERNK 332 >UniRef50_C1TNC1 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=2 Tax=Synergistaceae RepID=C1TNC1_9BACT Length = 338 Score = 116 bits (290), Expect = 1e-24, Method: Composition-based stats. Identities = 60/315 (19%), Positives = 117/315 (37%), Gaps = 20/315 (6%) Query: 12 GLAAVMSQSAMAENLK----LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP--- 64 +A + Q ++ +G LV P++ T + + K++G V +A P Sbjct: 32 SIATIEDQMGSLPDITGQERIGVLVITLSNPYWVTMKERYGEWAKEMGISVEVMAAPTEK 91 Query: 65 DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124 D + LN ++++ A G ++ DP + KA + V+ V+ G Sbjct: 92 DLKSQLNTLEAMVAKKYDGIIVTPMDPFNLIPGIVKADEKGIPVV-CSGPEVSRDGLKQA 150 Query: 125 TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA 184 + T + QG+ ++M ++ E A++ + RR G+ + + Sbjct: 151 GAVMDGWI-TATFKDQGRLCAEDMAEKLPSGSEVAIIEGIPGAGQSKARR-EGASEGFEK 208 Query: 185 AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF 244 AG ++ V + D A+D +++ HP++K I ND L V A E G Sbjct: 209 AG---LKLVAVEAGNWDRNRAYDITTNLVKAHPQLKG--IYCANDVMALAAVDALEVAGI 263 Query: 245 KAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFT 304 + + G ++ GS S + + KD + P+ Sbjct: 264 EGVTVYGTDF----IPEAAEAIKSGRLAGSTTFSQAAWTRGTLVYTLKLIKKDEDLPEKL 319 Query: 305 EVTDVVLITRDNFKE 319 V + L+ +N + Sbjct: 320 SV-PITLVNGENIGQ 333 >UniRef50_A1STY3 Transcriptional regulator, periplasmic binding protein of LacI family protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1STY3_PSYIN Length = 334 Score = 116 bits (289), Expect = 2e-24, Method: Composition-based stats. Identities = 52/296 (17%), Positives = 110/296 (37%), Gaps = 20/296 (6%) Query: 24 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---PDGEKTLNAIDSLAASG 80 + + ++K P+F+ + A +A KDLG ++ ++ + + L Sbjct: 52 DKHTIALVMKTLTNPFFKEMERGARRAEKDLGINLLVKTAAQETSIQQQIGIVADLIELK 111 Query: 81 AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQF--VNAKGKPMDTVPLVMMAATKIGE 138 VI D I+ A+ + VI +D+ +K + VP + + E Sbjct: 112 VDALVIAPGDSVELIPILKHAQDKGIIVINIDNLLDQEYSKKVGLLNVPFISVDN----E 167 Query: 139 RQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTK 198 + K + ++ E A++ L+ A R G++ A + F + + Sbjct: 168 LAAYKSTKVLTEKLTQPTEVAIIEGIRGALN-AELRKNGAIRAFSESKF--ATLVATESA 224 Query: 199 SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVD 258 + I AF+ A + ++P + I ND LG + + G ++ + + + Sbjct: 225 NWKIDEAFELAAKLYNKNPNI--GAIFCANDMMALGVIEYLQSTG--KDNVQVVAFDAI- 279 Query: 259 AVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314 L+ Q+ ++ GY+ N ++ P K T + +IT+ Sbjct: 280 -PQALNAVQSGVLLATVDQDAAEQGYQGILSANNILSGKKTPLKIT--IEAKIITK 332 >UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RKK5_9CLOT Length = 350 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 45/293 (15%), Positives = 98/293 (33%), Gaps = 23/293 (7%) Query: 28 LGFLVKQPEEPWFQTEWKFADKAG---KDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGF 84 + +++ + + K KD + D ++ +++ +G + Sbjct: 69 VSVIIETFDNTFASFVMNAMKKYEEEHKDKIHITYLDSKQDANTQISQVENQILNGTQAI 128 Query: 85 VICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQEL 144 + D K IV + + +IA + F N V G + Sbjct: 129 ICLAVDAKQSEPIVRACKEAGVPLIAFNRIFEN-------CDSFVGADGAVAGSLLARFT 181 Query: 145 YKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPG 204 ++ +G + +M + R ++ L +P+ Q+ Sbjct: 182 GEKTGGKGNVAIVNGIMGQENQFI-----RRDAIVETLGEM-YPDMQVVIEGAGDWKRDK 235 Query: 205 AFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELS 264 A + L ++ I+ +ND +G A E G K+ DII G+NG ++ Sbjct: 236 ALQLVETWLQSGTDID--AILCLNDDMAMGTQLAVEQAG-KSDDIIVCGVNG--DPDGIN 290 Query: 265 KAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317 + ++ +PD ++ E ++ + P+ + L+T DN Sbjct: 291 AVRDGKIAATVFQNPDRQAEEALEAALQYIHGE--KPESKIMIPFELVTADNV 341 >UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobacterium dentium RepID=D2Q6W7_9BIFI Length = 327 Score = 115 bits (288), Expect = 2e-24, Method: Composition-based stats. Identities = 53/305 (17%), Positives = 113/305 (37%), Gaps = 23/305 (7%) Query: 5 TKALAAIGLAAVMSQSA------MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV 58 A+AA +A + + A ++N ++ + K + ++ + + AD A G V Sbjct: 9 LAAVAAFTVAPLSACGAGQSNGSESKNYEIAMVAKGFSQSFWVSVHQGADDAAAKYGATV 68 Query: 59 IK---IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQF 115 +K + + + I D + V A+ + + A D F Sbjct: 69 TFNGPDNDSQVDKQADMVQNAINKSPDAVAIAPLDEAALTPAVQSAKSASIPLFAFDTAF 128 Query: 116 VNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRT 175 TV + ++G+ + L + +G + + T+ R Sbjct: 129 ETNADAITSTVK---TSNREVGKVAAENLIALLNGKGKYA-----VIAHSQTDATSTERR 180 Query: 176 TGSMDALKAAGFPEKQIY-QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLG 234 G +D +K P+ ++ +V + D A D A+++L +P++ I N++TV+G Sbjct: 181 DGFLDYMKKNA-PDMEMVGEVQYSNADQAKAQDIASAILQANPDLD--AIFATNEATVVG 237 Query: 235 GVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWV 294 E ++ +G++ A + + GS+ +P GYK+ E + Sbjct: 238 AATPVESALKSGHKVLLVGVDSGKA--QQQYIRDGVISGSVSQNPYQIGYKTIENAVKSL 295 Query: 295 AKDVE 299 + Sbjct: 296 NGEKI 300 >UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BF94_9GAMM Length = 319 Score = 115 bits (287), Expect = 2e-24, Method: Composition-based stats. Identities = 52/303 (17%), Positives = 110/303 (36%), Gaps = 20/303 (6%) Query: 19 QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPD---GEKTLNAIDS 75 Q+ + K+ ++K P++ + A +A +LG E+I + + E+ ++ ID Sbjct: 29 QATPVDKPKVLLVMKSLVNPFYIQMEQGARQAANELGVELIVRSGTNETLVEQQISLIDE 88 Query: 76 LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA--KGKPMDTVPLVMMAA 133 A+G VI D ++ +A +K++ +D++ + + +P V + Sbjct: 89 QLAAGIDALVIAPADSIAILPVLIRANELGVKIVNIDNRIDTNAIQRAGLPAIPFVSVDN 148 Query: 134 TKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIY 193 G G+ L + A++ AR R G+ AL+ ++ Sbjct: 149 EFGGYEAGKILAELAG-----PDAKALIIEGPRSAINARERRDGARRALQENN---IEVV 200 Query: 194 QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIG 253 S + A+ ++ ++PE+ +I ND LG + + G D + G Sbjct: 201 ASEVASWKLESAYALTQNVHARNPELN--VIFAANDMMALGALLYAQEHGLN--DWLIAG 256 Query: 254 INGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLIT 313 + + + ++ D GY+ + + V V+ Sbjct: 257 FDNIPDARAAVRE--GRLAVTIDQQADRQGYQGVATAVDLLNDKAV-DDVVLVKTRVITA 313 Query: 314 RDN 316 DN Sbjct: 314 DDN 316 >UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Proteobacteria RepID=A8GD77_SERP5 Length = 305 Score = 115 bits (287), Expect = 3e-24, Method: Composition-based stats. Identities = 51/323 (15%), Positives = 115/323 (35%), Gaps = 21/323 (6%) Query: 3 KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-I 61 K+ K + + S S +AE +G + ++ + DK K G V Sbjct: 2 KYLKRIVLVAALGC-STSVLAE--TIGVSMAYFDQNFLTIIRHSIDKEAKARGISVQFED 58 Query: 62 AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121 A D + + + + ++G ++ + AI + ++ V+ ++ K Sbjct: 59 ARGDVGRQADQVQNFISAGVDAIIVDPVNSAGTPAITKMVTKAGIPLVYVNRTPGDS--K 116 Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181 V V + G Q +EL + +G + A +RT Sbjct: 117 LPAGVVFVGSDEKQSGTLQMEELARLANYQGNVAVMIGNLTDAG-----ALQRTKDVEQV 171 Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241 + A +P+ ++ Q + + D + + + ++ ND +G + A + Sbjct: 172 V--AKYPKMKVVQKQSANYSRSEGMDLMLNWITNGESID--IVAANNDEMAIGAIMALQQ 227 Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATG-FYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300 G + + ++ + G+DA + KA ++G ++ G S ++ + + Sbjct: 228 AGKQGSKVL---VGGIDATPDGLKALSSGKMQVTVFQDAVGQGKASVDVAQRMIKGEKLD 284 Query: 301 PKFTEVTDVVLITRDNFKEELEK 323 P + L+T N ++ K Sbjct: 285 PYYW--IPFELVTPANMQKYAAK 305 >UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Sinorhizobium RepID=A6UHJ3_SINMW Length = 322 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 50/311 (16%), Positives = 103/311 (33%), Gaps = 19/311 (6%) Query: 19 QSAMAENLKLGFLVKQPEEPWFQTEWKFA-DKAGKDLGFEVIKIAVPD-GEKTLNAIDSL 76 A + ++GF EPW K +A K E+I D EK + +++L Sbjct: 28 AVAQDKKFRIGFSQATTIEPWRAQFNKDIIAEAAKHPDVELIITDGEDRTEKQVADVENL 87 Query: 77 AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136 ++ + + +V +A + V +D + V I Sbjct: 88 IRQEVDALLVSPKESAGLTGVVQQAIDAKIPVFVLDRNVETDQYTQ-----FVGGDNKLI 142 Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEK-QIYQV 195 G G+ + + +G + + V A R G + P + Sbjct: 143 GRAAGEYAVELLGGKG-KAQGNIVEIWGGMGTQPAHDRHDGFHEFTDKE--PGIKNLLDK 199 Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255 + A++ + L + ++ L+ G ND G A + G + +I IGI+ Sbjct: 200 QSGDWKQDQAYNIMATALRNNEKID--LVYGHNDPMAYGAYLAAKDAGREK-EIKFIGID 256 Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315 + ++ + L + G + ++ + T D + +T + Sbjct: 257 AL-PNEGVTWVSNGELTATFLYATP--GAEGLRQAVKFLKGEKVEKTVT--LDTLKVTEE 311 Query: 316 NFKEELEKKGL 326 N + ++ GL Sbjct: 312 NAAQIMKDNGL 322 >UniRef50_A3CKH1 Periplasmic sugar-binding protein (Ribose porter), putative n=6 Tax=Streptococcus RepID=A3CKH1_STRSV Length = 328 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 49/299 (16%), Positives = 104/299 (34%), Gaps = 22/299 (7%) Query: 24 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAK 82 + +K+G +++T +K G + ++ D K ID Sbjct: 42 KQVKIGVTYMTMNNDFYKTLNAELEKKTNQQGSRLYVRDPELDEGKQSQQIDFFVREKVD 101 Query: 83 GFVICTPDPKLGSAI--VAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140 VI S I + KA+ +K+I VD + ++ + G Sbjct: 102 VIVINPVKSNSPSIISSLQKAKKAGIKIIVVDAPISQD----VKVDTTIVSDNYQAGVLI 157 Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSN 200 Q++ K + + ++ + +A R G +D ++ P +I Sbjct: 158 AQDMMKRLP-------SANILLLEHRNAVSAMDRIQGFIDTIEKQ--PSYKIISQKETLG 208 Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260 L + +++ +ND +G + A + QG I G++G + Sbjct: 209 QTEETMPQVKGAL--DEGLDFNVVMALNDRAAIGALAAIKNQGLDK-KISIYGVDGSPDI 265 Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 A + G++ SP G K ++++ + ++ + + V L+ RDN + Sbjct: 266 KNFL-ATTSDIEGTVAQSPIQMGRKVAQVIE--LMQEGKSYDSQYLIPVHLVNRDNISQ 321 >UniRef50_C6D2L3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacillales RepID=C6D2L3_PAESJ Length = 332 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 52/309 (16%), Positives = 104/309 (33%), Gaps = 22/309 (7%) Query: 22 MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPD---GEKTLNAIDSLAA 78 ++ + K +++ + A + G V I P + + Sbjct: 36 KTVDIIVTVKAKSSAIDFWKVLITGVEDAANEFGANVTVIGPPSETEIDTQTEQLKQAIR 95 Query: 79 SGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGE 138 V+ D + + +K+I VD + + + GE Sbjct: 96 QKPDAIVMAATDYNRLVPVAQQIVKAGIKLITVDSRINSDDALS-----FIATDNIAAGE 150 Query: 139 RQGQELYKEMQKRGWDVKESAVMAITA-NELDTARRRTTGSMDALKAAGFPEKQIYQVPT 197 + G+E+ K + + S V ++ + R G L+ G ++ Sbjct: 151 KAGEEMAKLLPESS----SSKVAIMSYVYGTSSQLEREKGVRQWLE--GHSHIEVASTLY 204 Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV 257 + A++ +L + P +K IVG+N+ + +G RA G + +G + Sbjct: 205 SEGRLEKAYELTKELLSEDPGIKG--IVGLNEPSTVGAGRAIRDLGLS-GKVKLVGFDSS 261 Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317 V E+ + +++ P GY S + V P T+ V+I +DN Sbjct: 262 --VDEVKLIEGGVLQATIVQKPYNMGYLSVKTAIEAVRGKKVPKLID--TESVIINKDNM 317 Query: 318 KEELEKKGL 326 E +K L Sbjct: 318 YTEQNQKLL 326 >UniRef50_Q029E0 Transcriptional regulator, LacI family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q029E0_SOLUE Length = 338 Score = 114 bits (286), Expect = 3e-24, Method: Composition-based stats. Identities = 62/305 (20%), Positives = 107/305 (35%), Gaps = 29/305 (9%) Query: 16 VMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV-PDGEKTLNAID 74 V A +G +V +F K + LG++V+ +G+ + +D Sbjct: 57 VARSLAARRTFMIGLIVPDLMHSFFAEIAKGVAATIRPLGYDVVICNSEENGDLESSEVD 116 Query: 75 SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134 L G ++ + P A+ + + +D +F + P V Sbjct: 117 RLLGRQVDGLLLASAQPPSSLAVFERIEARGTPYVLIDRRFADVHA------PYVGADDE 170 Query: 135 KIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAG--FPEKQI 192 IG Q L D + I + T R G +AL A+G PE I Sbjct: 171 AIGRMATQHLI--------DRGCRRIAHIAGPAVTTGLGRQKGYEEALAASGINIPEGFI 222 Query: 193 YQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK-AADIIG 251 Q D + A +L P I G ND T G ++A G + +I Sbjct: 223 VQA----TDDDTGYQATRRLLKLTPRPD--AIFGYNDPTAAGAMKAILEAGIRIPEEIKV 276 Query: 252 IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311 IG+ V L + ++ S G +++++L + + P T + D +L Sbjct: 277 IGVGNVHYSDLLRVPLS-----TIDQSSASIGQQAADILLKAIGNKRKRPAKTILIDPIL 331 Query: 312 ITRDN 316 I R++ Sbjct: 332 IARES 336 >UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DAQ0_9CLOT Length = 332 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 52/305 (17%), Positives = 114/305 (37%), Gaps = 24/305 (7%) Query: 19 QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKD----LGFEVIKIAVP-DGEKTLNAI 73 ++ + K+ F+VK + +F + A+K G+D + E++ P + E+ + + Sbjct: 47 TASTGQKYKIAFIVKSLQSAFFINMTEAAEKCGQDYADKISVEIMAPQTPFNIEEQIQLV 106 Query: 74 DSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAA 133 + + VI D + + KA + V+ N K D V V Sbjct: 107 EQCITNKMDAIVIAPCDSEGIVPAIKKANDAGILVVT-----ANTKANGGDIVSYVGAQN 161 Query: 134 TKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIY 193 +G L++++ +G ++ T+ R G +ALK +P ++ Sbjct: 162 FDVGYSLATALFEKLGGQGK-----VILIEGKAGNSTSEERAEGFKEALK--EYPGIELL 214 Query: 194 QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIG 253 D A + L + ++ ++ + LG + A + G +I+ + Sbjct: 215 ASQPADWDRASAMTVMENCLQTYDQIDG--VLTLTKDMGLGTIEAIKSAGRDK-EIVSMT 271 Query: 254 INGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLIT 313 + D V KA Y S + Y + ++ A D +++ + ++T Sbjct: 272 FDVDDDVISALKA--GDLYASGNQNEQSQAYIA--IMTAVFALDGYKVDSSQIMPITVVT 327 Query: 314 RDNFK 318 ++F+ Sbjct: 328 AEDFQ 332 >UniRef50_C4FY38 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FY38_9FIRM Length = 339 Score = 114 bits (284), Expect = 5e-24, Method: Composition-based stats. Identities = 66/294 (22%), Positives = 113/294 (38%), Gaps = 14/294 (4%) Query: 11 IGLAAVMSQSAMAEN--LKLGFLVKQPEEPWFQTEWKFADKAGKD-LGFEVIK-IAVPDG 66 + L +S AE+ +K+G + ++ + + +K K+ E+I + D Sbjct: 16 LALVPSLSPKVQAEDKNIKIGVAFYKYDDAYMSSVRVALEKIAKEHSNVELIVNDSQNDQ 75 Query: 67 EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTV 126 K + ID + G +I D A+V KA+ ++ ++ + + K D Sbjct: 76 AKQNDQIDVMIQKGVDVLLINVVDTGAAEAVVQKAKDANIPLVLFNREPATDVVKAYDKA 135 Query: 127 PLVMMAATKIGERQGQELYKEMQ-----KRGWDVKESAVMAITANELDTARRRTTGSMDA 181 V A + G QG+ + + + R + K VM I E A RT ++D Sbjct: 136 RFVGTTAKEAGIIQGKMIAELWKSDKKYDRNGNGKLDYVMLIGDPENPEAIARTKYAVDT 195 Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241 L A E + D A A ++ L + + +I+ NDS G + A +G Sbjct: 196 LTEAKI-EVNKLGDQVANWDPDKAKTATDAWLAKDAD-NIDVIISNNDSMASGAIAALQG 253 Query: 242 QGFK--AADIIGIGINGVDAVSELSKAQATGFY-GSLLPSPDVHGYKSSEMLYN 292 GF A I + GVDA E A G G++ + + YN Sbjct: 254 AGFNTDAKADKKIPVFGVDATEEAVDLIARGIMTGTVKQDAEGMAKAVFALSYN 307 >UniRef50_C3MI72 Putative ribose ABC transporter, ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3MI72_RHISN Length = 367 Score = 113 bits (283), Expect = 7e-24, Method: Composition-based stats. Identities = 47/295 (15%), Positives = 98/295 (33%), Gaps = 24/295 (8%) Query: 26 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI------AVPDGEKTLNAIDSLAAS 79 LKLGFL + + + ++ K G E I++ + + + A+++ Sbjct: 71 LKLGFLPTAMDTYYQRVLAGVKEEIDKRGGAEAIELLVQAPSSQSATDDQIRAMEAWIND 130 Query: 80 GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139 G + + + +A + V + F + V V + G Sbjct: 131 GIDAIAVALYNEGALLPSIRRATEAGIPVFLFNSPFADNP----YYVSDVGYDQSDGGRA 186 Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199 Q Q + + E + + +R G + + P +I Sbjct: 187 QAQWIVDTYGDK-----EVKIGILEGLPGPHTSQRMKGFNEIISK--HPNFKIVAQQPAG 239 Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259 +M +P+++ ++V + D LGG++A + +G + I G + Sbjct: 240 WVRAQGLSVTENMFTANPDIE--VLVALYDEMALGGLQALKAKGLNGK----VAIVGYEN 293 Query: 260 VSELSKAQATG-FYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLIT 313 + E + A TG F ++ G + ++ K PK V+ V Sbjct: 294 MKEANAAILTGDFSATVDTGAKEEGRNIVRAVDEFLMKGNPLPKKIFVSPKVYDA 348 >UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IB16_CLOBU Length = 324 Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats. Identities = 58/313 (18%), Positives = 105/313 (33%), Gaps = 22/313 (7%) Query: 8 LAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDG 66 I V S++ + K+G +F+ + ++ G +I Sbjct: 26 CIYISSNGVYSENGVESKRKIGATYMTMNNSYFKIINEEIRYVVEENGDTLITRDPALSL 85 Query: 67 EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTV 126 +K + I I D + A+ + T Sbjct: 86 DKQIEEIYDFIDLKVDAIFINPVDWVGIRNALIDAQKAG----IIIIAIDTDIYDDDLTA 141 Query: 127 PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAG 186 V+ K G ++L M KR + ++ + +A R G DA++ Sbjct: 142 CTVVSDNYKAGVLCAEDL---MNKR----NSANIILLEHKSAKSAIDRINGFEDAIRNN- 193 Query: 187 FPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA 246 ++ + A ++L++ +V I+ +ND + LGG+ A E + K Sbjct: 194 -KNFKVVARSDCDGQLETAMPVVENILLKQKDVDT--IMALNDPSALGGIMALEEKNIKG 250 Query: 247 ADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEV 306 ++ GI+G ++ K ++ SP G S E LYN K V Sbjct: 251 INVY--GIDGSPDGKKMVKEDK--MSATVSQSPRKIGRISGESLYNIFQGKEVDKKI--V 304 Query: 307 TDVVLITRDNFKE 319 V LIT++N E Sbjct: 305 VPVELITKENIDE 317 >UniRef50_Q221W3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Burkholderiales RepID=Q221W3_RHOFD Length = 331 Score = 113 bits (283), Expect = 8e-24, Method: Composition-based stats. Identities = 63/318 (19%), Positives = 113/318 (35%), Gaps = 21/318 (6%) Query: 4 FTKALAAIGLAAVMSQSAMAENLK---LGFLVKQPEEPWFQTEWKFADKAGKDLG--FEV 58 F AL AI L + +A A+++K + + K P+F A A LG ++ Sbjct: 24 FQFALLAIPLTLAVQMNATAKDVKDLRIAVIPKVAV-PFFDDCNNGAKAAADKLGVQYQW 82 Query: 59 IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 + G + ++ L + G I +PK A + KA +KV+ D N+ Sbjct: 83 VVPQNTQGSTQVRILEDLISKKVDGIAISVNEPKSVEAAIKKAVASGIKVVTFDSDSANS 142 Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 + + GE G+ + K + G + + R TG Sbjct: 143 GRSM-----YIGTINSAAGETMGESMAKAIDGEGEVAILTGQLGAAN-----LNERITGI 192 Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238 +L +P+ ++ +D+ A S+ HP +K V + V A Sbjct: 193 KKSLSK--YPKIKVVATEGTEDDLAKAVSTTESLFRGHPALKGIFGVSQVGGPAVSKVMA 250 Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 T+ G K + + D + + G ++ P G + E L + + Sbjct: 251 TKEFGSKKGAVKVFAFD--DLPDTVKGVKEGYIQGIMVQRPVTMGKLAVEHLVDQITGKE 308 Query: 299 EPPKFTEVTDVVLITRDN 316 PK + T V ++T N Sbjct: 309 PAPKDVD-TGVNVVTSQN 325 >UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P063_9CLOT Length = 326 Score = 113 bits (281), Expect = 1e-23, Method: Composition-based stats. Identities = 51/292 (17%), Positives = 105/292 (35%), Gaps = 21/292 (7%) Query: 29 GFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA-VPDGEKTLNAIDSLAASGAKGFVIC 87 G +++ + G ++I + D +K I L + Sbjct: 48 GATYMTMNNEFYKIVNNQIRMQVEKNGDQMITLDPALDQKKQNEQIKQLVKRKVDAIFLN 107 Query: 88 TPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKE 147 D K + A+ + VI +D Q + M V K G +E+ K+ Sbjct: 108 PVDWKAVEPGLVAAKKAKIPVIVIDSQVYRSDLVAMTIV----SDNYKAGVLCAKEMMKQ 163 Query: 148 MQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFD 207 ++ ++ +T N +A R G +D +K +I I A Sbjct: 164 K-------DQANIVLLTHNAARSAVDRINGFLDTIKNN--KNYKILASADTQGQIERALP 214 Query: 208 AANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQ 267 + ++ ++ + +++G+ND +G + A + +G + ++ GI+G +L K Sbjct: 215 KVDKIIEEYQNID--VVMGLNDPAAMGALAALDSKGAREG-VLVYGIDGSPEGKKLIKE- 270 Query: 268 ATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 G+ SP + Y + + K +V V +IT+ N ++ Sbjct: 271 -GMMTGTAAQSPKQMADTAVNAAYQILQGEKVEKK--KVISVQMITKKNVEQ 319 >UniRef50_UPI000185D1D6 putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D1D6 Length = 903 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 48/262 (18%), Positives = 91/262 (34%), Gaps = 23/262 (8%) Query: 58 VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117 +I+ D K + I+ V+ + + + ++ KA + VI VD + Sbjct: 63 LIRSVKDDTPKQIADIEWFIEQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRKIAT 122 Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177 V +IG+ G ++ +G + T++ R G Sbjct: 123 E-----SYTAYVGANNYQIGKEAGLYAIGVLKGKGNIAEVRGTKGSTSDA-----ERHKG 172 Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG-V 236 +DALK A PE QI + A + +HP + L+ MND G Sbjct: 173 FVDALKNA--PEVQIVAETWGNFLQADAKTQMQQIFQEHPHID--LVFAMNDPMAAGTHE 228 Query: 237 RATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296 A + G IG++ + V + + + S + G K E+ + K Sbjct: 229 AAMQFNGKIP---FIIGVDALQQVG-IQNIENSVQDASFIYP--TGGEKVIELAMKILHK 282 Query: 297 DVEPPKFTEVTDVVLITRDNFK 318 P + + + ++ + N + Sbjct: 283 Q--PFQRENILNTTVVDKSNVR 302 >UniRef50_A5D1M8 ABC-type sugar transport system, periplasmic component n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D1M8_PELTS Length = 386 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 60/313 (19%), Positives = 109/313 (34%), Gaps = 23/313 (7%) Query: 8 LAAIGLAAVMS---------QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV 58 LA L+ S Q+ + + G +VK+P P+ Q A++ K+LG +V Sbjct: 28 LAVFLLSGCASKQAGQKTPEQAGNGKQITFGMIVKEPTAPFVQAFINGAEQKAKELGVKV 87 Query: 59 -IKIAVPDGEKTLNAIDSLAASGAKGFVIC-TPDPKLGSAIVAKARGYDMKVIAVDDQFV 116 IK D K + +D+ G ++ D K V K + +IA+D Sbjct: 88 DIKDGQADSLKIMELMDNFIVQKVDGLIMAGAVDLKAIVPGVKKLNEAGIPIIALDT--- 144 Query: 117 NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKR--GWDVKESAVMAITANELDTARRR 174 + +G +D + + ++ + K ++ R G K + A E A+ Sbjct: 145 SPEGGKVDL--FISFDIEESSKKAAEAFIKGIKDRNNGEVPKGVVIEITGAVEDMFAQAC 202 Query: 175 TTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLG 234 + G + +P+ + Q K N+ + + +L ++ + + V D G Sbjct: 203 SKGFHAVVDR--YPQLTVVQGEGKWNNED-SHKRTSDLLTRYGKEVKGIYVHTPDIMGPG 259 Query: 235 GVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWV 294 V A E G D GI L + + + + LY+ Sbjct: 260 VVSAIEAAGLNPKDFGITGI--CMGPEGLQLIKEGKILAIVEQPALDSAELAVQYLYDLK 317 Query: 295 AKDVEPPKFTEVT 307 P VT Sbjct: 318 TGKGIPKIGDTVT 330 >UniRef50_C0C300 Putative uncharacterized protein n=2 Tax=Clostridium hylemonae DSM 15053 RepID=C0C300_9CLOT Length = 347 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 52/287 (18%), Positives = 113/287 (39%), Gaps = 19/287 (6%) Query: 24 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI--AVPDGEKTLNAIDSLAASG- 80 E+LK+ + K P F++ + A + +LG + I + D K +N + L + G Sbjct: 45 EDLKVVMMPKVMGMPIFESYYNSAKEQADELGITLDYIGPSELDASKQVNLVQDLISGGD 104 Query: 81 AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI-GER 139 +IC D + ++ +A + V DD V+ + + M + KI GE+ Sbjct: 105 TDALLICPADGEALVPVLKEAMDAGIHVYTWDDDVVDESAREY----FINMCSDKIYGEQ 160 Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199 G+ + + ++ +G + + N T+ ++ + +P+ ++ Sbjct: 161 MGKTVGEMLKGKGK------IGVVNGNMTATSLTLKEEALQDVLKNEYPDIKVMPTVYHG 214 Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259 D A+ +L +P++ ++ +LG +A + G ++I G + Sbjct: 215 GDQQKAYALCQDLLTANPDLDLIAVIAT--PGLLGAAQAVDASGRN--EVIVYGAEQPNN 270 Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEV 306 + E K G L G ++ ++Y+ +A E + V Sbjct: 271 IKEYMKKDGLEVVGCLW-DVMTLGKEAVNIVYSCLADGKEYKEGDTV 316 >UniRef50_A0R773 Sugar ABC transporter substrate-binding protein n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0R773_MYCS2 Length = 332 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 54/308 (17%), Positives = 104/308 (33%), Gaps = 18/308 (5%) Query: 9 AAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP---D 65 ++ L + ++ +K+G + K P+F + A G ++I +A D Sbjct: 19 GSLVLGMTACGGSGSDGVKVGLITKTDSNPYFVHLREAAQAQADKDGAQLIAVAGAFDGD 78 Query: 66 GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDT 125 E + AI+++ G KG +I + KAR + VIA+D Sbjct: 79 NEGQVTAIENMVGQGVKGILITPNSSTGVLDAIKKARDAGVVVIALDTATDPEDAV---- 134 Query: 126 VPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAA 185 G QG+ + + + VM R G ++ Sbjct: 135 DATFATDNKAAGVAQGKWV----KAALGNTPPQVVMLDGTPGGTVDTFRHDGFLEGFGLT 190 Query: 186 GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK 245 +I + D A A ++L + P V + +N+ G +A + G Sbjct: 191 DNSP-EIVGQENTNGDQTKAQTAMENLLQRAPGVN--ALYTINEPAAAGAYQAIQAVGR- 246 Query: 246 AADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTE 305 A + I+G + ++ +A +++ P + + + +P F Sbjct: 247 ADQVTIGSIDGS--CTGVADVKAGKIGATVMQFPAKMAELGVQAVVKFAEDGTKPSGF-N 303 Query: 306 VTDVVLIT 313 T LIT Sbjct: 304 DTGSELIT 311 >UniRef50_C0EIT8 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EIT8_9CLOT Length = 338 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 54/278 (19%), Positives = 101/278 (36%), Gaps = 16/278 (5%) Query: 24 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAK 82 E L G+ V ++ +FQ K +LG E+ D + + +L SG Sbjct: 47 EKLTFGWSVYTRDQTFFQQLEKGVVDKATELGIEIKTHDQKNDSNEMVTGCTNLINSGVD 106 Query: 83 GFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQ 142 ++C P+ IV A D+ VI D ++ + ++ G+ G Sbjct: 107 ALIVCPCKPEAMGNIVTLAHQKDIPVIITDIGDGDSDKDAI-----IISDMKAGGQMAGV 161 Query: 143 ELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDI 202 + ++++ E A++ + + A+RR G + ++ AGF + + ++ Sbjct: 162 YTAELLKEKSITSGEVAIIKCEESAVY-AQRRNEGYKEEIEKAGF---TVAKELVANSKQ 217 Query: 203 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSE 262 + +L +P++ + ND G A + G D+I G NG D Sbjct: 218 EEGYTVMKDILASNPDI--VAVFAANDPMAAGAASALQEAG--KTDVIVTGFNGDD--IA 271 Query: 263 LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300 L G++ G K E+ V P Sbjct: 272 LEYIADGKMMGTVAQDVLGIGAKGVELAKLAVEGKDIP 309 >UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0J1_9CLOT Length = 333 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 62/329 (18%), Positives = 116/329 (35%), Gaps = 36/329 (10%) Query: 2 HKFTKALAAIG----LAAVMSQSAMAE----------NLKLGFLVKQPEEPWFQTEWKFA 47 +F A + LAA S + ++K+ F + + +++ W Sbjct: 3 KRFLAAFLCLTMCLSLAACSSGEKEKKGSDSGDKKEESVKVAFSIPEMFSTFWEACWYGF 62 Query: 48 DKAGKDLGFEVIKIAVP-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDM 106 +K K+ G+E + D E ++ + S G + + + + + Sbjct: 63 EKQAKEYGWEATLLDPQGDLELQISQLQSQVTKGVDAIGVAPIENEAIGPALTTVNEAGV 122 Query: 107 KVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITAN 166 V VD + +G+ + T + K GE ++L K+ + + V+ I Sbjct: 123 PVFCVDRR---GEGEVVST---LETDNVKAGEAMAEQLVKDYGE------DVDVLIIQGV 170 Query: 167 ELDT-ARRRTTGSMDALKAAGFPEKQIYQVPT-KSNDIPGAFDAANSMLVQHPEVKHWLI 224 DT RT G + L+ + I P+ A + L +P++ +I Sbjct: 171 LSDTPTLDRTQGVKNVLEK--YENITIVGEPSAGEYSNEAALATTKNFLETNPDLD--VI 226 Query: 225 VGMNDSTVLGGVRATEGQGF--KAADIIGIGINGVDAVSELSKAQATG-FYGSLLPSPDV 281 D+ V G V A + G K + +GI VD E+ K G G+ P Sbjct: 227 FTCTDALVPGIVAALKEAGKTGKVGEENHVGIYSVDGAGEVLKLIEDGTVDGTFSQYPIQ 286 Query: 282 HGYKSSEMLYNWVAKDVEPPKFTEVTDVV 310 G + + + ++ K DVV Sbjct: 287 FGIDTVKSMKTYLDGGKVEEKVYYNGDVV 315 >UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KM03_RHISN Length = 312 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 46/313 (14%), Positives = 97/313 (30%), Gaps = 7/313 (2%) Query: 11 IGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTL 70 IG A+ ++ A +G + + D+A K ++ A D K L Sbjct: 6 IGTTAMFLAASSAYAGDIGVTIASNDTFLAVMVQAMKDEAAKTNQPLQVEFADADVNKQL 65 Query: 71 NAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVM 130 + I + A+ ++ + I A + ++ V++ + + Sbjct: 66 SQIQNFIAAKVDAIIVNVVESTATPTITKMAADAGIPLVYVNNTPSDLDQLGPKAA-FIG 124 Query: 131 MAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEK 190 G Q +E+ + +++ G ++ A +R+ D + Sbjct: 125 SQEIDAGTLQAKEVCRVLKEEGKTEDAGILIIQGVLAQHAAEQRSKAVHDVVATPECNFM 184 Query: 191 QIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADII 250 +I T D A D + + K ++ ND LG V + + G++ D+I Sbjct: 185 KIIDEQTAQWDPVKAQDLMTNWITA--GHKPVAVLSNNDDMALGAVNSLKAAGWEMKDVI 242 Query: 251 GIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVV 310 GI+ + + ++ G S + + Sbjct: 243 VAGIDATK--EAMHYVKTGDLDATVFQDAVGQGAGSVDAAIKLAKGEKVESPVW--IPFE 298 Query: 311 LITRDNFKEELEK 323 L+ N L K Sbjct: 299 LVNAANVDTYLNK 311 >UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWP1_HALOH Length = 320 Score = 112 bits (279), Expect = 2e-23, Method: Composition-based stats. Identities = 47/283 (16%), Positives = 98/283 (34%), Gaps = 20/283 (7%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTLNAID 74 +E ++ K + ++ T A+ A K+LG E++ D K +N I+ Sbjct: 23 GDVQASEKYQILVSPKGLSQSYWLTVKAGAEAAAKELGAEIVWRGPAQETDVAKQVNVIN 82 Query: 75 SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134 V+ D + +A + VI +D + + Sbjct: 83 DFVNKKIDAIVVAATDANALIPPLKRAHEAGIPVITIDSGI-----NADFPISHIATNNK 137 Query: 135 KIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194 + ++ + L + K+G V T+ R G + + + + + Sbjct: 138 EAAKKAAEVLANIIGKKGEVACIPFVAGAA-----TSIARENGFKEGI--SNYKNIDLVA 190 Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254 V +D A ++L HP +K I N++ +G RA + +G A D+I +G Sbjct: 191 VQYSQSDYATAMKVTENILTAHPNLKG--IFAANEAGAVGAARALKARGKTA-DVILVGF 247 Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 + + K ++ P + GY+ + + + Sbjct: 248 DAAQTEIDAMKE--GIIDALIVQRPYMMGYEGVKNAVAALEGE 288 >UniRef50_C0D949 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D949_9CLOT Length = 352 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 62/298 (20%), Positives = 106/298 (35%), Gaps = 16/298 (5%) Query: 26 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLAASGAKGF 84 LK GF W T + + + +GFEV+ A D + ++ L A G Sbjct: 64 LKAGFAACHYTNDWNITNCETVCEDLRSVGFEVVWNEANNDTATQIANVEDLLAQGIDLL 123 Query: 85 VICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQEL 144 VI + + + R + VI +D + + P V +M GE GQ L Sbjct: 124 VIKPKEEEGLIPALEACRDAGVPVICLDRKVSD----PSLYVTAIMTDNVAGGETVGQWL 179 Query: 145 YKEMQKRGWDVKESAVMAITANELDTAR-RRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203 ++ I T + R+ G + + + + QI N Sbjct: 180 VDHY------PDGCKIVEIVGTAGSTGQIERSKGLSNVIDK--YDQIQIISSQVGDNMRS 231 Query: 204 GAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSEL 263 A +M+ + + +IV ND +G ++A G G + I I G D SE+ Sbjct: 232 EAQTVTENMIQAYGKEGIDVIVTQNDEMAMGCLQALWGLGIEPGQEITICTIG-DGNSEV 290 Query: 264 SKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEEL 321 + G G + S G + E+ + + K+ + T +N +EL Sbjct: 291 VEQVKDGTVGCVYESTPYLGPQVLEVAHKIFVTKEDVEKYIPSAN-RFFTIENADQEL 347 >UniRef50_A8RM26 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RM26_9CLOT Length = 369 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 52/292 (17%), Positives = 103/292 (35%), Gaps = 12/292 (4%) Query: 26 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDSLAASGAKGF 84 K+ + E A + G + ++ D + + D+ +G + Sbjct: 81 YKIAYANWNDENSISIIVRDSVLDACRYYGVDCMVFDNKQDANQAITNCDTAIQAGVDYY 140 Query: 85 VICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQEL 144 + D + +AI K + +I++ + + P + K G G+ L Sbjct: 141 LNFNQDESINAAIADKLEKAGIPMISIQTKARDG------IDPEYHIDNYKFGTLCGELL 194 Query: 145 YKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPG 204 KE +R D K +A +R G D++ A P+ +++++ T D Sbjct: 195 IKEAGERWPDEKPVLFVAGHPESGVNFIQRAEGCKDSVLEA-LPKTEVFEIST-EGDPEI 252 Query: 205 AFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELS 264 L HP K ++ D +G + A + G D+I E Sbjct: 253 TRQRTADFLTAHPNGK-IMMWCHIDQNTMGMLAAVKAAGR-VDDVIITSCGANPVAFEEL 310 Query: 265 KAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316 K + G++ + G+ M+ + +PP T V + +IT++N Sbjct: 311 KKDDSPILGTVAQFSERFGWDLLPMVIEHLNDGTKPPLET-VPPLDIITKEN 361 >UniRef50_Q7MCP2 ABC-type sugar transport system, periplasmic component n=4 Tax=Proteobacteria RepID=Q7MCP2_VIBVY Length = 318 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 55/296 (18%), Positives = 106/296 (35%), Gaps = 15/296 (5%) Query: 10 AIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI-AVPDGEK 68 A +A S A ++ ++V P++Q W + K LG+E + + A D + Sbjct: 7 AFCVALFFSPWLSASQ-QIVYMVSDLRIPFWQIMWGGIENEAKQLGYEAVVLSAENDAKT 65 Query: 69 TLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPL 128 L I A G ++ + I+ A ++ V+ D G V Sbjct: 66 ELENIIKAIALKPDGIILSPTNSSAAVTILKMAEQANIPVVISD--IGTEGGTF---VSY 120 Query: 129 VMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFP 188 + + Q L M+ +GW E V+AI + RT G ++A K G Sbjct: 121 IESDNFSGAFQLAQILAAAMKAKGWQNGEVGVVAI-PQKRKNGIERTEGFVEAAKQQGMR 179 Query: 189 EKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAAD 248 I K F +ML +H +++ + G + A + G + Sbjct: 180 IAAI--KQQKDFSYQETFIFTQTMLREHRKIRAIWLQGS--DRYQAALDAIDSLG-QRDK 234 Query: 249 IIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFT 304 ++ I + ++ ++Q GS + P + G ++ L+ ++ + Sbjct: 235 VLLICFDAEPEFIDMIRSQQ--LVGSGMQQPFLMGERAMNSLHQYLLGHTVAKEQQ 288 >UniRef50_UPI00016C56B8 bifunctional carbohydrate binding and transport protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C56B8 Length = 349 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 65/328 (19%), Positives = 109/328 (33%), Gaps = 24/328 (7%) Query: 8 LAAIGLAAVMSQSAMA-ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE------VIK 60 L + + S A E + + K +Q+ + A++ DL E VI Sbjct: 8 LLLAAVLPIASGCARRGEEYTIVVIPKGLSHEHWQSVRRGAERCAADLEAEDGTRVRVIF 67 Query: 61 IAVP---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117 D + + +D A+GA V+ +A V +A + V+ +D + Sbjct: 68 DGPLRERDALEQIRIVDRRVATGASALVLAPQHSATMTACVKRAADAGVPVVIIDSGLDD 127 Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177 P V V G G+ L +E+Q+R D K ++ A R G Sbjct: 128 ----PNHFVKYVATDNYNGGRLAGRHLIRELQRRRKD-KPKLILFRYAVGSQATEDRERG 182 Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANS-MLVQHPEVKHWLIVGMNDSTVLGGV 236 D +K + + A A +L +V I N+S+ G Sbjct: 183 FEDEVKERCPGAEWLSTDKYAGATRDSAMREAGPLILQFGNQVDG--IFAPNESSASGTA 240 Query: 237 RATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296 QG + + +G + L Q GS+L P GY S+ + Sbjct: 241 DVLRAQGLNQ-KVALMAFDGSKPL--LQSIQQGDVIGSILQDPYRMGYLSAWYCVRHLRG 297 Query: 297 D---VEPPKFTEVTDVVLITRDNFKEEL 321 + + +E T LIT +N Sbjct: 298 EDMNNGRREMSEGTGEYLITAENVTSAF 325 >UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AX36_HERA2 Length = 335 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 60/315 (19%), Positives = 104/315 (33%), Gaps = 25/315 (7%) Query: 13 LAAVMSQSAMAENL------KLGFLVKQPEEPWFQTEWKFADKAGKDLG----FEVIKIA 62 LA + SA + K+G ++K +FQ A++ + F I Sbjct: 34 LAGCGTTSATPVSTATPTKPKIGLVMKSLSNEFFQQMQAGAEEYARQNATRFDFTATGIN 93 Query: 63 VP-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121 D + + + L V+ D A VAKA + VI +D A K Sbjct: 94 DERDFATQIASFERLVNEQYDVIVLAPADSIALVAPVAKAVKAGIVVINIDVALDEATKK 153 Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181 + G + E+ + G V + E D A +R G DA Sbjct: 154 AAGIDLAFFGPDNRAGAKMSGEVLAKALGAGGKVA----VLEGNPEADNAVQRRLGFDDA 209 Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241 + + + + + L ++P+++ I+ NDS G V+A E Sbjct: 210 IADGS---LNLVVAESGHWETSEGQSITAAWLKKYPDLQG--IMCANDSMAFGAVQALEA 264 Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301 I +G + + AV L K ++ + Y + + Sbjct: 265 ANL-LDKIKVVGFDNIPAVQPLIKD--GKMLATVEQYGAQMAAIGMDYGYRTLKGEKFSG 321 Query: 302 KFTEVTDVVLITRDN 316 T++ LIT+DN Sbjct: 322 WIR--TELKLITKDN 334 >UniRef50_C6D2L0 Periplasmic binding protein/LacI transcriptional regulator n=10 Tax=Bacteria RepID=C6D2L0_PAESJ Length = 333 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 45/284 (15%), Positives = 98/284 (34%), Gaps = 19/284 (6%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP---DGEKTLNAID 74 A + + + + K + ++Q A+KA + E+ +K + + Sbjct: 38 GTKASGDKIYIPIISKGFQHQFWQAVKAGAEKAATEFNVEITFEGPETEAQVDKQIEMLQ 97 Query: 75 SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134 + D + ++ KA+ + VIA D + + Sbjct: 98 AALDKKPSAIGFAALDSQASVPLLQKAKAAGIPVIAFDSGVDSDIPITTAS-----TNNV 152 Query: 135 KIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194 ++ + + G E V+ + T R G ++ +K +P +I Sbjct: 153 AAAALAADKMAELIGGEG----EIGVIVHDQTSV-TGVDRRDGFVNRIKE-KYPNIKIVD 206 Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254 + D + D A +M+ HP +K + G N+ + +G + A K I IG Sbjct: 207 IQYGGGDHLKSTDLAKAMIQAHPNIKGF--FGSNEGSAVGVINAVTEL-KKEGQITVIGF 263 Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 + A + K + G++ +P GY++ + + + Sbjct: 264 DSGKAQIDAIK--SGVMAGAITQNPVGIGYETVKAAVEAIRGEK 305 >UniRef50_A8RTB0 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RTB0_9CLOT Length = 358 Score = 111 bits (278), Expect = 3e-23, Method: Composition-based stats. Identities = 44/274 (16%), Positives = 83/274 (30%), Gaps = 14/274 (5%) Query: 27 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDSLAASGAKGFV 85 K+GF + W + K + G+E V+ A D K ++ ++ L Sbjct: 72 KVGFSELAIDGAWRVAQVDSMQKEAESRGYEFVMSNAELDTAKQISDVEDLLTQDLDFLF 131 Query: 86 ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145 I D + + A+ + I +D + G L QG+ Sbjct: 132 IAPIDMEAIMPAIEAAKAKGVPTILLDREANGTPGVDYICTILSNYI------WQGEACA 185 Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205 + + G V R R G +K + +I + A Sbjct: 186 DWLSENGGADSYKIVQITGKVGGSDVRDRQAGFETGVKK--YENMEIVATQSGEWSRTEA 243 Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF-KAADIIGIGINGVDAVSELS 264 +++ ++ ND LG V A + G D+ I I+G E Sbjct: 244 QKVMQNIIQSTGG-DFNVVYCHNDEMALGVVLALKAAGMNPGTDVKVIAIDGQAEAVEAI 302 Query: 265 KAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 A + P G + + + ++ ++ Sbjct: 303 IAGEMNCIATCNP---RFGPVAFDTMEKYLNEEK 333 >UniRef50_C5ESA7 Predicted protein n=2 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ESA7_9FIRM Length = 328 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 50/326 (15%), Positives = 106/326 (32%), Gaps = 20/326 (6%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENL--KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV 58 M K L + + + + + + + + E + A++ + G++ Sbjct: 11 MKKKVLGLLLVCMMILSTTACAPKEKQKTIAIVPWSMAETFAVDFSHAAEEQIEGRGWKA 70 Query: 59 IKIA-VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117 + + D I++L G + D + IV KA+ + ++ D Sbjct: 71 VIVDPKGDWGSEYTIIENLITQQVDGIIYTAIDADGANDIVKKAQEAGIPMVGYDCLASA 130 Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177 V K G+ ++ + ++ + V+ + ++ R G Sbjct: 131 GTEDAA-----VRYDDYKGGQMAAEQAMEALEGKK---DAKIVVFEDDPSIASSTLRVNG 182 Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237 ++ A +P+ ++ T+ G + A M+ HPE I + Sbjct: 183 FVE-FLAENYPDVEVVLNRTQDKTSDGCYIWATDMITAHPETD--AIFCYWAECAMATYN 239 Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATG--FYGSLLPSPDVHGYKSSEMLYNWVA 295 A + G I IG + + E K G Y S SP + ++ + A Sbjct: 240 ALQDAGNTRTKI--IGYDATEEQQETMKKDGEGGQLYASPGMSPSRMATQCVVLMEDIFA 297 Query: 296 K--DVEPPKFTEVTDVVLITRDNFKE 319 P+ D VL+ N ++ Sbjct: 298 DKYKRNGPEDIYEMDPVLLNVHNAED 323 >UniRef50_Q7P137 Probable ribose ABC transporter, substrate binding protein n=1 Tax=Chromobacterium violaceum RepID=Q7P137_CHRVO Length = 313 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 61/298 (20%), Positives = 103/298 (34%), Gaps = 30/298 (10%) Query: 27 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV---IKIAVPDGEKTLNAIDSLAASGAKG 83 ++G V + P++Q + A +A L V + A + + L A Sbjct: 25 RIGISVGALDNPFYQALARGAVQAAHRLNPGVRITSQSANFTLGQQQQQLRQLIAQKVDL 84 Query: 84 FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143 ++ D + +V +AR + V+AVD + G V GE + Sbjct: 85 ILLGAVDSNAVAPLVRQARAAGITVVAVDVDAPDVDGT-------VKSDNHLAGEIVCRY 137 Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV-PTKSNDI 202 L + ++ RG +M + + R G AL A FP + Sbjct: 138 LAQRLRGRG------TLMIQGGPPVTSVSDRIAGCHAALAA--FPHIRAVDDGLNAQGSS 189 Query: 203 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSE 262 G A L + P++ + +ND LG +A G K + I VD + Sbjct: 190 LGGQRAMQQALQRWPDM--AAVFTINDRQALGVEKALLAAGRKQ-----VLIGSVDGSPD 242 Query: 263 LSKA--QATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318 + +A S SP + G ++ ++ D T V L+TRDN Sbjct: 243 IERALRLPGQIVVSASQSPYLLGREAVKLGVKLRRGDTSVRHVT--VPVGLVTRDNLS 298 >UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinomycetales RepID=D2PNL9_9ACTO Length = 335 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 52/307 (16%), Positives = 106/307 (34%), Gaps = 18/307 (5%) Query: 24 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEVIK-IAVPDGEKTLNAIDSLAASGA 81 +G EP+ Q A ++ FEV A D K + +++ Sbjct: 45 GKYVIGMSQANVAEPYRQRMDDDIKAAAAEVPQFEVKFADAAQDNAKQVADVENYITQQI 104 Query: 82 KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141 +I + K +A+V KA + V+ +D + + +IG G Sbjct: 105 DLLIISPNEAKPLTAVVKKAYDQGIPVLVLDRKVEGD-----AYTGFIGGDNVQIGTEAG 159 Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201 + + +++ G +V E +A + R G +KA P+ ++ + Sbjct: 160 KYVAEKVLPNGGNVVEIKGLAGATPQA----ERNQGFATGIKAN--PKVKVVATASGDWL 213 Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261 +++L +P++ ++ ND G A + G + ++ IGI+ + S Sbjct: 214 REKGQAQMDALLKANPKID--VVYAHNDPMAEGAYLAAKAVGREK-EMKFIGIDALPIPS 270 Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEEL 321 KA G + P G ++ + K + LI + N + Sbjct: 271 GGIKAVEQGRLTATFTYPTN-GKEAIAAAKKLLVDCGTIEKTQTL-PTRLIDKTNAAQIY 328 Query: 322 EKKGLGG 328 ++ G Sbjct: 329 AQENPTG 335 >UniRef50_A9BGQ4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGQ4_PETMO Length = 342 Score = 111 bits (277), Expect = 4e-23, Method: Composition-based stats. Identities = 51/303 (16%), Positives = 113/303 (37%), Gaps = 17/303 (5%) Query: 20 SAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPD---GEKTLNAIDSL 76 + + ++ + F+VK E ++Q A KA G E I + ++ +++ Sbjct: 38 AIQSSDMTIFFIVKASENEFWQIVLDGAQKAANHFGVEFIHQEATSESEVSRQVSILETA 97 Query: 77 AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136 ++ V+ + +A + VI +D + V + I Sbjct: 98 ISTNPDAIVLAPTVADALVPGIERAMDSGIPVIIIDSMANTD-----NYVSFLGSDNYTI 152 Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196 G+R EL K ++++ + + + R +G +D ++ A +P+ ++ V Sbjct: 153 GQRSADELAKALEEKNGSPSGKVAAITYMSGVGSLEARISGFLDRIEEA-YPDIEVVSVR 211 Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256 + + +L +P++ + N T VRA + QG D+ + ++ Sbjct: 212 DAMGQVGNTINITLDLLTAYPDLDG--LYANNQMTGDDMVRALDMQGRN--DLAAVAVDA 267 Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316 E+ + L+ P V GY Y +A++ P T +++IT ++ Sbjct: 268 S--AQEIWGLENGYLDSVLVQQPWVMGYAGV--AYAVMARNGVPLAKNVDTGILVITPES 323 Query: 317 FKE 319 Sbjct: 324 LAS 326 >UniRef50_B1YL86 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YL86_EXIS2 Length = 317 Score = 111 bits (276), Expect = 4e-23, Method: Composition-based stats. Identities = 40/279 (14%), Positives = 84/279 (30%), Gaps = 14/279 (5%) Query: 28 LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGE-KTLNAIDSLAASGAKGFVI 86 +GF + + + Q K +E + + I I Sbjct: 37 VGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFI 96 Query: 87 CTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYK 146 T D + + +A+ + V A+D + V + IGE+ + Sbjct: 97 TTLDDVYIGSAIEEAKKAGIPVFAIDRMIRSD-----AVVSSITSNNQMIGEQLASYIKN 151 Query: 147 EMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAF 206 E+ K+ V + T R G + ++ P I + + D + Sbjct: 152 ELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENE--PTLSIVDSVSGNYDPVTSE 209 Query: 207 DAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKA 266 ++ + + ND +G + A + I +GI+G A+ E Sbjct: 210 RVMRQVIDS--GIPFDAVYCHNDDIAMGVLEALKKAKISGK--IVVGIDGNRAILEAVDM 265 Query: 267 QATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTE 305 ++ +++ S + + L P +F Sbjct: 266 KS--MDATVVQSAEEMMKVAFSALKLHTKNKKIPDRFYT 302 >UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S3L7_9CLOT Length = 378 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 61/300 (20%), Positives = 114/300 (38%), Gaps = 24/300 (8%) Query: 27 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK---IAVPDGEKTLNAIDSLAASGAKG 83 K+G L+ ++ T ++A +DLG E+ A D + L+A++++ G Sbjct: 91 KIGVLISSTSNEFWGTMKTRYEEAAEDLGIEIRVFEADAEDDTQGQLDALNTMVTMGFDA 150 Query: 84 FVICTPDPKLGSAIVAKARGYDMKVI----AVDDQFVNAKGKPMDTVPLVMMAATKIGER 139 ++ D + A ++ VI VD + + G +D V E Sbjct: 151 IILSPIDGTNLIPGIVAANEAEIPVINLGPGVDAEALADAGGHLDGKITVNF------EE 204 Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199 QG + +M R D + A++A + RT G+ + ++ Sbjct: 205 QGSTVANDMISRMEDGGKVAILAGLEGAGQSVG-RTNGAKTVFENTE--GVELVAAQACD 261 Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259 D A++A +L HP++K I ND+ L V+A + G K D++ G++ Sbjct: 262 WDTEKAYEATKDILTAHPDLKG--IFACNDNMALAAVQALQEMGNK--DVMVYGVDYTTD 317 Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 + GS+ S ++ + EM V + L+T+DN + Sbjct: 318 AKAAI--EDGTMMGSMTYSSAIYTKAAEEMAMLIVQGKTFKDPVY--LPLTLVTQDNVAD 373 >UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CUK5_9CLOT Length = 336 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 40/297 (13%), Positives = 100/297 (33%), Gaps = 23/297 (7%) Query: 24 ENLKLGFLVKQPEEPWFQTEWKFADKAGK---DLGFEVIKIAVP-DGEKTLNAIDSLAAS 79 + F+VK + + + A+ A ++ + I P E+ + ++ Sbjct: 54 KTYNFVFIVKSMQFSFMLSMIDGAEAAAALVPNINIKCIGPETPYSVEEQIQLVEQAITD 113 Query: 80 GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139 GA +I D + KA + + + + + + + +G Sbjct: 114 GADAILITPADSTGIVPAIEKANAAGIPIATPNTKAYGGD-----VLTWIGVDNYTVGYE 168 Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199 G L + ++ G V+ T+ R G +DA K +P ++ Sbjct: 169 LGTALCEALEGTGK-----VVLIEGTAGNSTSTERVDGYLDAFK--NYPGIELLDSQPAD 221 Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259 + + L ++PE+ + +N +G + A + G +++ + + + Sbjct: 222 FNREKGMTVMENFLQRYPEIDG--VGSINKDMTMGAIEACKAVGRDK-EMVQVTFDVDND 278 Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316 + A G+ + ++ + +A + + + L+T+DN Sbjct: 279 CLDAIDAGDILITGA----QEEKSQIANAIYACLLACNGYKVAPEQYIPMTLVTKDN 331 >UniRef50_B5GKD2 D-ribose ABC transporter permease protein n=1 Tax=Streptomyces sp. SPB74 RepID=B5GKD2_9ACTO Length = 432 Score = 111 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 61/313 (19%), Positives = 114/313 (36%), Gaps = 20/313 (6%) Query: 15 AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAI 73 S + +G P+F K K G EV+ A D K + + Sbjct: 136 GAASGGKGDGDYTVGMANFTLSGPYFVGMDKAVKARAKKKGVEVVSTDAGGDAAKLASNV 195 Query: 74 DSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAA 133 + L + +I + A++ + I VD +F + + Sbjct: 196 EDLLSKNVDAVIISGGPLESAPAVLNALKSAGKPAILVDRKFRSGT-----YASWIGPDN 250 Query: 134 TKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIY 193 IG + G+ L ++ K A++ + RTTG AL AAG ++ Sbjct: 251 EAIGRQDGEFLAAKLGKD----ATVALIKGGPADNSIGLARTTGVKKALDAAG---IRMV 303 Query: 194 QVP-TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGI 252 + P + G S+L H ++ + ND+ LG RA + G + +I+ Sbjct: 304 EGPDYGNWASDGGLTVMESLLASHKDLD--AVFCENDAMCLGAQRAVKDAGREK-EIVLA 360 Query: 253 GINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLI 312 G++G A + + A + + L D G + + + D + P+ V D + Sbjct: 361 GVDG-QAEALQAIAAGGNYLVTGLNDADQIGSLGLDRAVDIL--DGKKPEKDTVVDSPQV 417 Query: 313 TRDNFKEELEKKG 325 T++N + + +G Sbjct: 418 TKENAAKYQDMEG 430 >UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-binding protein n=3 Tax=Rhizobium etli RepID=Q2KAX1_RHIEC Length = 307 Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats. Identities = 62/318 (19%), Positives = 108/318 (33%), Gaps = 26/318 (8%) Query: 10 AIGLAAVMSQSAMAEN-LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI--KIAVPDG 66 AI LA + + SA A + +G+ + + +A K + A D Sbjct: 12 AISLATISTGSAFAADKFVVGYANMADTDVFVMARKNAFIEASKSDPAVEVNFSDANNDV 71 Query: 67 EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTV 126 K L+ ID+ A V+ D + V KA + VIA+ Q K Sbjct: 72 SKQLDQIDNFIAQKVNAIVVVPVDYQGIVPGVEKANQAGIPVIALGIQSAGGKYT----- 126 Query: 127 PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAG 186 V G QG+ + + + K + L + R G DAL + Sbjct: 127 -FVGSKNIDAGRLQGEYMKEHLPK-----GAKILYLEGTPGLSHTQERKKGFEDALGRS- 179 Query: 187 FPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA 246 + + + D + P+ IV ND LG + A +G Sbjct: 180 --DVTTLASLSANYDRAEGMKVTEDWIQSFPKFD--AIVAANDQMALGALEALQGA---- 231 Query: 247 ADIIGIGINGVDAVSELSKAQATGFYG-SLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTE 305 + G+ I+GVD ++ A G ++ + E++ + P + + Sbjct: 232 DRLKGVMISGVDGTADALNAIKAGTMSQTIFQDAAGQAKAAFEVVEGLKKGEDAPAE--K 289 Query: 306 VTDVVLITRDNFKEELEK 323 + IT+DN + +K Sbjct: 290 LVPFASITKDNVGQYAKK 307 >UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NEL2_EUBSP Length = 321 Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats. Identities = 57/307 (18%), Positives = 107/307 (34%), Gaps = 23/307 (7%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSL 76 S+S + + +GF K + + + A+ A K+ G ++I A D K +N ++L Sbjct: 29 SKSGGEDKITIGFSSKTNSDTFVKAIADAAEDAAKEQGVDLIMADAEGDVNKQINDCETL 88 Query: 77 AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136 A ++ D + + +V+ A D+ +I + + + V + Sbjct: 89 IAQQVDALIVIPQDVEGSAPVVSMANEADIPIIICNGDIADK-----NYTAFVGCTDQES 143 Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARR-RTTGSMDALKAAGFPEKQIYQV 195 GE G S + I + + R G + F ++ Sbjct: 144 GEILGTWF------NDNVEHGSQICIIEGPMGQSGQVGRYAGFEEVGMLDNF---EVLSC 194 Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255 T + A A L + + K IV ND +G + A + G D++ G++ Sbjct: 195 QTANWKRDEAMALAEDWLTTYGD-KLKAIVCENDDMAMGALSACKAAGRT--DVVIGGVD 251 Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315 G++ + K G S+L G + E+ + + IT D Sbjct: 252 GLEDAIQAVKDGELGV--SVLQDSAGQGEGAVEVALQIINGEDYQKD--TRIPFHAITSD 307 Query: 316 NFKEELE 322 N LE Sbjct: 308 NVDAYLE 314 >UniRef50_C5ET05 D-ribose-binding protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ET05_9FIRM Length = 336 Score = 110 bits (275), Expect = 6e-23, Method: Composition-based stats. Identities = 46/288 (15%), Positives = 86/288 (29%), Gaps = 21/288 (7%) Query: 14 AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK--IAVPDGEKTLN 71 A +Q + + L E + A+K +LG + D +K + Sbjct: 42 TAAAAQGEGKDGYTIAVLAWSQAEEFGVDIISGAEKKAAELGNVTVVKPDPAGDMQKEIA 101 Query: 72 AIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMM 131 ++ L G + D + K R + ++ D V+ Sbjct: 102 ILEDLIQQGVDAICVAPVDANAIVPYIDKVREAGIVLVDYDID------TEAQCDAKVLS 155 Query: 132 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ 191 G L +EM G ++ + TA R G D + P + Sbjct: 156 DNAAGGAMAADYLVQEMGTEGK-----VLILTEVPGVTTAEERIAGFKDRMAEIA-PNVE 209 Query: 192 IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 251 + + + +ML HP++ I LG A + + D++ Sbjct: 210 MVEQLSNG-TRDTHRATTENMLQAHPDITG--IFCFMGDNSLGAYTACKTNNRQ--DVLI 264 Query: 252 IGINGVDAVSELSKAQA--TGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 G + ++ K S+ P GY + E YN + + Sbjct: 265 AGYDATPEQLDIMKNDGPDCNLICSVALYPKKIGYVALETAYNILEGE 312 >UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE Length = 364 Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats. Identities = 59/308 (19%), Positives = 109/308 (35%), Gaps = 29/308 (9%) Query: 24 ENLKLGFLVKQPEEPWFQTEWKFAD---KAGKDLGFEVIKIAVP-----DGEKTLNAIDS 75 +KLG + K E +++T + + + K+ G+ + D + L+ ++ Sbjct: 69 GEIKLGSVAKAFENEYWRTLKEGEELGTQKFKENGYNITLDMKSAQGEGDEQGQLSIVED 128 Query: 76 LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135 + ++ V KA+ ++ VI V+D + + V A Sbjct: 129 MINKKYTALLLSPISDGNLVPGVEKAKKNNIPVINVNDGIIK------NADIFVGPKAIM 182 Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195 GE + + K++ G + I + AR+RT G + +K+ +I + Sbjct: 183 NGELAAEWISKKIGGEG-----EVAIVIGMPKAFAARQRTLGFENWMKSNA-AGVKIVEK 236 Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255 D A D A + ++P +K I ND LG A DI+ +G++ Sbjct: 237 QNADWDRAKAKDLAEIWIKKYPNLK--AIFCNNDVMALGVQEAVNA---SKRDILVVGVD 291 Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315 G+ + ++ P G + EM + P T LI Sbjct: 292 GIK--EAYESIRKGEMDATVDSFPLYKGQIAVEMALRSLGGQQLPRVIW--TPQALIDST 347 Query: 316 NFKEELEK 323 N E EK Sbjct: 348 NVNEPSEK 355 >UniRef50_C9LY79 Periplasmic ribose-binding protein n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LY79_9FIRM Length = 342 Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats. Identities = 46/254 (18%), Positives = 84/254 (33%), Gaps = 11/254 (4%) Query: 15 AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP-DGEKTLNAI 73 + + +G+ + W +A +D G E+ E + AI Sbjct: 31 GSAEPGSGNRKITMGYSQIGAQSTWRAAHTASIKQAAEDAGIELQFSNAELKQENQIRAI 90 Query: 74 DSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAA 133 S A ++ +A+ + VI VD + + + Sbjct: 91 RSFIAQKVDIIAFSPIVATGWDEVLKEAKAAKIPVIIVDRDLQTNDDSLY--IMRIGTDS 148 Query: 134 TKIGERQGQELYKEMQKRGWDVKESA----VMAITAN-ELDTARRRTTGSMDALKAAGFP 188 + G + L MQ++G ++ + I RR TG DA+ A+ Sbjct: 149 VREGREAFRWLDGYMQEKGKKPRDGGAKFNIAEIKGPAGSSVVERRDTGFRDAMTASPNK 208 Query: 189 EK-QIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA 247 + +I + G ML + + K ++ ND LG + A E G K Sbjct: 209 DAYEILVAQNSTFQKDGGKQVMTEMLKNYKD-KIDILFAQNDDMALGAIEAIEAAGLKPG 267 Query: 248 -DIIGIGINGVDAV 260 DI+ + +G A+ Sbjct: 268 QDIVIVSCDGTRAI 281 >UniRef50_B9J8H1 Fructose ABC transporter n=23 Tax=Bacteria RepID=B9J8H1_AGRRK Length = 341 Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats. Identities = 54/289 (18%), Positives = 102/289 (35%), Gaps = 21/289 (7%) Query: 25 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP---DGEKTLNAIDSLAASGA 81 ++ + K P+F + A K+LG + A D E + AI+S ASGA Sbjct: 27 DVSACLITKTDTNPFFVKMKEGATAKAKELGVTLKSYAGKIDGDSESQVAAIESCIASGA 86 Query: 82 KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141 KG +I D K + V KAR + VIA+D A G+ G Sbjct: 87 KGILITASDTKGIVSSVKKARDAGLLVIALDTPLEPADAADATFAT----DNLLAGKLIG 142 Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL--------KAAGFPEKQIY 193 + K + + D K + +T ++ R G M K + +I Sbjct: 143 EWANKTLGDKAKDAK-IGFLDLTPSQPSVDVLRDQGFMIGFGIDPKDPNKIGDETDPRIV 201 Query: 194 QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIG 253 + + G A ++L + + +I +N+ +G +A + G + ++ + Sbjct: 202 GHDVTNGNEEGGRKAMENLLQKDSSIN--VIHTINEPAAVGAYQALKAVGLEK-QVLIVS 258 Query: 254 INGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302 ++G + + + P + E + + +P Sbjct: 259 VDG--GCPGVKSVKEGVIGATSQQYPLMMAALGVEAIKKFADTGEKPKP 305 >UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HPK6_GLUDA Length = 336 Score = 110 bits (274), Expect = 8e-23, Method: Composition-based stats. Identities = 61/322 (18%), Positives = 107/322 (33%), Gaps = 20/322 (6%) Query: 9 AAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFA-DKAGKDLGFEVIKIAVPD-- 65 A + AAV A A + + +VK ++Q K A D K + + Sbjct: 30 ATMLCAAVAVGQAHAADRGIAVIVKTANSNYWQNVRKGAADAVAKVENYTMTFQGPTSES 89 Query: 66 -GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124 +N + V+ DP + KA + V+ +D ++ K Sbjct: 90 AVADQVNMVADAVTQKVAAIVLAPSDPDALVPSIRKAWEAHIPVVLIDSMISDSGAKYYQ 149 Query: 125 TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA 184 + + GE G+E+ + + G S V + + R G + Sbjct: 150 S--FLATDNEAAGEALGKEMVDHVGQTGKVAIMSYV-----PGVGSEIGRVGGFRKYI-- 200 Query: 185 AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF 244 A QI + + A + +L +P++K I N+ T +G RA + G Sbjct: 201 AEHSHIQIVGPFYSQSQMALAMNQTTDVLASNPDLKG--IFAANEMTAVGVGRAIQQAG- 257 Query: 245 KAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFT 304 K+ + I +G + E ++ F + G K E + P Sbjct: 258 KSGKLYAIAFDGNE--DEQGFVRSGTFQLLAVQGSYAMGAKGVETAIGVLTG--AKPTKY 313 Query: 305 EVTDVVLITRDNFKEELEKKGL 326 T VV +T N K+ L Sbjct: 314 VNTGVVFVTSANLDSPEAKQVL 335 >UniRef50_B5CR03 Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR03_9FIRM Length = 332 Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats. Identities = 53/291 (18%), Positives = 97/291 (33%), Gaps = 20/291 (6%) Query: 29 GFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVIC 87 GF P++ T A ++ G ++ IK D E+ I L +C Sbjct: 53 GFCGIDMSNPFYATLKDSVQSALEEQGDKLLIKDPAGDAERQNTQIQELIEEDVDAVFLC 112 Query: 88 TPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKE 147 D K + D+ VI +D + + V G G++L + Sbjct: 113 PVDWKKIEPALDALEEADIPVINLDTKVYESGKVAA----FVGSDNRNAGYVCGEDLVER 168 Query: 148 MQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFD 207 V+ + +++ R TG +A+ F ++ + ND+ G Sbjct: 169 ------KPDGGQVVIVENLNVNSVCERITGFEEAVSKGAF---EVVKRIQTGNDVSGLKQ 219 Query: 208 AANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQ 267 +L Q+P++ I+ +D A G + ++G A + Sbjct: 220 QVAQVLAQNPDLD--AIMCGDDQMAEQVREAITEAG--QEKVYVYSVDGSPASKKALVEH 275 Query: 268 ATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318 G G SP G K+ ++ + + + E T I RDN + Sbjct: 276 TGGMMGIGAQSPINLGKKAVKIANAVLNGEDYEKETYEET--FFINRDNVE 324 >UniRef50_C0XA52 Periplasmic sugar-binding protein n=3 Tax=Lactobacillus RepID=C0XA52_9LACO Length = 320 Score = 110 bits (274), Expect = 9e-23, Method: Composition-based stats. Identities = 54/307 (17%), Positives = 102/307 (33%), Gaps = 22/307 (7%) Query: 16 VMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP--DGEKTLNAI 73 +Q +K G ++QT + D +++ P +N I Sbjct: 24 FYAQPFGHRPIKFGSTYMTMNNDFYQTLNEPIANEIDDHN-DILYSRNPELSVNNQVNEI 82 Query: 74 DSLAASGAKGFVICTPDPKLGSAI--VAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMM 131 ++ + K I D I + KA +K+I VD Q N+ +D + Sbjct: 83 NNFIKNEVKVIFINPVDGTSTKLIRALKKAHEAGIKIIVVDSQLENSS-NYVDCT--IRS 139 Query: 132 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ 191 + G +EL K + ++ + + R G D +K Sbjct: 140 NNYQAGVLCAKELM-------SKQKSANILILQQPTAISVVDRIKGFEDTIKNN--KNFH 190 Query: 192 IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 251 I + ++ L Q I+ +ND T +G + A K++ I Sbjct: 191 IVDKINTTGQSENSYPKVQKYLKQGKNFDT--IMSLNDKTAVGALAAI-NANNKSSKIAI 247 Query: 252 IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311 I+G + + ++ Q ++ SP G + ++ Y + + + V L Sbjct: 248 YSIDGSENIKKMLSTQNANVKATVAQSPLQIGKVAIKVAYELINHQKVKKEI--ILPVKL 305 Query: 312 ITRDNFK 318 IT N K Sbjct: 306 ITSKNIK 312 >UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FZM3_ACICJ Length = 339 Score = 109 bits (273), Expect = 9e-23, Method: Composition-based stats. Identities = 57/312 (18%), Positives = 108/312 (34%), Gaps = 24/312 (7%) Query: 19 QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTLNAIDS 75 + A++ + K P++ + AD A K G V A D + +++ Sbjct: 37 PAKPAKHYHFTLITKSNASPYWLAVREGADAAAKKFGVSVAFEAPASGTDLAGQIGMVNN 96 Query: 76 LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135 G G ++ +P+ V A + + V+ VD P + + + Sbjct: 97 AVTGGTDGIILAAQNPQALLKPVKSALAHHIPVVTVDSGL-----SPNISDCFLATSNVG 151 Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEK-QIYQ 194 + + + + T R G M +K +P ++ Sbjct: 152 AAAALAKYTADHLMGGKGQYA----IVDFNHTASTGIARPKGFMLGMK--SYPHIKKMGP 205 Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254 + +ND+ A +ML Q+P +K +I G ND LG A + A + +G Sbjct: 206 IQYSNNDVSAGLRIATTMLTQYPHLK--VIFGANDRAALGPAEAVQRAH---AKVKVVGF 260 Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314 + + E++ +A S+L SP GY + L + + P + T L+T Sbjct: 261 DA--DLGEIALVKAGIIQASILQSPYDMGYYAVVALLDKLDGKTLPKRIN--TPYFLLTP 316 Query: 315 DNFKEELEKKGL 326 N + Sbjct: 317 KNLGSSQATAAI 328 >UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G5I4_ABIDE Length = 342 Score = 109 bits (273), Expect = 1e-22, Method: Composition-based stats. Identities = 50/310 (16%), Positives = 106/310 (34%), Gaps = 27/310 (8%) Query: 21 AMAENLK---LGFLVKQPEEPWFQTEWKFADKAGKDL--GFEV-IKIAVPDGEKTLNAID 74 A + N K + +L + P++ + K+ G +V + + + L + Sbjct: 46 ASSGNYKGKSIAYLTPSLDVPFWCYMKHGIEDQAKNTMPGVKVTVYDSKDNANTQLANVQ 105 Query: 75 SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134 + G VI D A+++ A + V+ D G+ V + + Sbjct: 106 DAITNKVDGIVISPTDSASCIAVLSAAEEAGIPVVICD--IGTDSGEY---VSFISTDNS 160 Query: 135 KIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194 ++ G+ + ++ K E A +A+ R G + +K K++ Sbjct: 161 GGAKKLGEYVADKLNK----GDEIAQIALNQAR-KNGVLRKEGFEEGIKE---KLKEVDF 212 Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254 + + ++ +P +K I ++ +G V A + +G Sbjct: 213 RQMEKVNRDEGVRYTQDLITSYPNLK--CIFCHSEDPSMGAVTALKE--INNDKCKIVGF 268 Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314 + V E K + + P G + + L + P K V D +L+T+ Sbjct: 269 DCSPEVVEAIK--SGDILATAAQQPVFMGRTAVDCLKTHL-DGGTPEKEISV-DTLLVTQ 324 Query: 315 DNFKEELEKK 324 DN + +K Sbjct: 325 DNINDVYDKL 334 >UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3_BACV8 Length = 908 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 48/266 (18%), Positives = 100/266 (37%), Gaps = 21/266 (7%) Query: 55 GFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD 113 G EV I+ A + + I+ ++ + + +V KA G + V+ +D Sbjct: 55 GVEVEIRTAKDNSRNQIEDINYFIDRKVDLLIVAPNEAAAVTPVVEKAYGLGIPVVVIDR 114 Query: 114 QFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDT-AR 172 + ++ + V +IG+ GQ + + +G ++ IT E T A Sbjct: 115 KILSDR-----YTAFVGADNCEIGKDVGQYIVNRLGGKGK------ILEITGLEGSTPAM 163 Query: 173 RRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTV 232 R G DALKA P +I + A + +S+L + + L+ ND Sbjct: 164 ERHRGLADALKAE--PGIEITASVDGAWLQSVAGEKMDSILQDNKGIN--LVFAQNDRMA 219 Query: 233 LGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYN 292 +G + + + +++ +GI+ + + G + P G K ++ + Sbjct: 220 VGAYLSARQRQLEK-EMLFVGIDALPGKGYGVEQVLEGVLDATFIYP-TGGDKVMQVAMD 277 Query: 293 WVAKDVEPPKFTEVTDVVLITRDNFK 318 + + P + L+ + N + Sbjct: 278 IL--EKRPYERDTKLSTALVDKTNAR 301 >UniRef50_A1WJI7 Periplasmic binding protein/LacI transcriptional regulator n=102 Tax=Proteobacteria RepID=A1WJI7_VEREI Length = 358 Score = 109 bits (272), Expect = 1e-22, Method: Composition-based stats. Identities = 47/246 (19%), Positives = 87/246 (35%), Gaps = 18/246 (7%) Query: 58 VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117 + D N +++ G + D + G+ V+KA ++ V+ N Sbjct: 88 TVFDGKYDALTQNNQFETMITQKYDGILFVPIDLQAGADAVSKAAEANIPVVGS-----N 142 Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTA-RRRTT 176 + + V G Q Q + M +G V+ + + R Sbjct: 143 GRVNSDKLLSYVGSNDVIAGAMQAQAVVDAMGGKGN------VVILEGPIGQSGQVERRQ 196 Query: 177 GSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 236 G++ L A +P ++ ++ T + A + L H K I+G ND LG + Sbjct: 197 GNLSVL--AKYPNVKVLEMKTANWSRAEALSLTENWLTAHAG-KINGIIGQNDEMALGAI 253 Query: 237 RATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296 A + +G I GI+G VS+ +A G S+L + ++L + Sbjct: 254 EAVKAKGLDPKTIPTAGIDG---VSDAVRAVKAGIMASVLQDASAQSQGALDVLLRKLIG 310 Query: 297 DVEPPK 302 P+ Sbjct: 311 ASYKPR 316 >UniRef50_B1LAH5 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Thermotoga RepID=B1LAH5_THESQ Length = 343 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 57/294 (19%), Positives = 100/294 (34%), Gaps = 23/294 (7%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA--VPDGEKTLNAIDS 75 S +E++ + K P++ A + LG + I A D K I S Sbjct: 15 SVFVFSEDMTILLAPKSLNNPYWFAVENGMKDAAEKLGIKAIFDAPVEADAAKQAEKILS 74 Query: 76 LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135 G G I DP+ +V +A + VI D ++ + Sbjct: 75 YIVKGVDGIGISPNDPEGIKVVVKRALDKGIPVIMFDSDSPDSG-----RYAYIGTNNYN 129 Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELD-TARRRTTGSMDALK---AAGFPEKQ 191 G G+ + + ++K + K + +T R G DAL+ E Sbjct: 130 AGYEAGKLMAQLIEKYRAEKKTIRLAILTGGLAALNLNERIRGFKDALEDYSKRSGKEIV 189 Query: 192 IYQVPTK-SNDIPGAFDAANSMLVQHPEVKHWLIVGM-----NDSTVLGGVRATEGQGFK 245 P +D A + ++ ++ W + G TV+ + E + Sbjct: 190 YVADPFPCDDDSAKAIQIIRDVTRKYTDLDGWFMSGGWPLFAPKETVISALGGPE----R 245 Query: 246 AADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 D++ +G + + + EL +A G + P GY S +LYN VE Sbjct: 246 MKDLLVVGFDTL--LPELELVKAGAVKGLVGQRPYDMGYLSVLVLYNMAKIGVE 297 >UniRef50_C0C2H6 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2H6_9CLOT Length = 342 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 56/298 (18%), Positives = 97/298 (32%), Gaps = 16/298 (5%) Query: 26 LKLGFLVKQPEEPWFQTEWKF-ADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKG 83 LK+GF V ++ FQTE + A + G E+ + A D ++ + S +G Sbjct: 51 LKIGFCVTNRDQ--FQTEQEGIAKELCDSKGIELSVADAKEDISTQISQVSSFVNAGCDL 108 Query: 84 FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143 +I D + I+ A ++ + + V M+ G G+ Sbjct: 109 LMINCVDAESIQEIINAAGDVPCVFF---NRMPSDHSVFDENHYYVGMSDYDCGYDMGKF 165 Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203 + + ++ V+ + RT G L +G+ T D Sbjct: 166 MAEWLKDNNKTDTADGVLFLGPLGATNTVSRTDGIKKGLADSGYK-VNWVFEDTAEWDRS 224 Query: 204 GAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSEL 263 A D + + I ND LG + A G+ A I G+DA Sbjct: 225 KAMDKFTQFMGSGKKFD--FIAANNDDMALGCIEALTAAGYSAP--FDFPIAGIDATENG 280 Query: 264 SKAQATG-FYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVT---DVVLITRDNF 317 A G + SP E+ + + P + + T ++T DN Sbjct: 281 LLAVGDGTLTATFDQSPSKMTNYCFEIAFAILQDTDMPEEVKDFTWIYKAEMVTADNV 338 >UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding protein n=2 Tax=Selenomonas RepID=C9LWW5_9FIRM Length = 347 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 45/294 (15%), Positives = 99/294 (33%), Gaps = 20/294 (6%) Query: 27 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFV 85 K+ + ++ + + K G +V A D ++ ++ ++ A V Sbjct: 70 KVIYANHNDDDAFAMQLKNTFAEKAKSAGLDVEFLDAKGDSNLQIDQLNEAISNKAAAIV 129 Query: 86 ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145 + D V KAR + V+ ++ + K V + + G QG+ + Sbjct: 130 LLAMDGTSIVPTVEKAREAGIPVVIMNRDVNDPK------VIGSLSDDREAGRMQGEFMA 183 Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205 + V + + L A +R G +A P+ ++ S Sbjct: 184 SHLP-----PNAKVVYLMGESSLSVAVKRWEGFKEACLDKR-PDVKLLASVDGSWSKAEG 237 Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSK 265 A L PE+ +V ND LG ++A + + G++ + L+ Sbjct: 238 MKAMTLWLSFFPEING--VVAANDEMALGAIQALKAANRLNG-CLVTGVDAT--PAGLAA 292 Query: 266 AQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 +A ++ + + ++ +++ P + ITR+N + Sbjct: 293 VEAGELSQTVKQDAEGQAAGAVTLVQGFLSGKA--PTESLDIPFTSITRENVAQ 344 >UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDT0_9FIRM Length = 326 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 45/300 (15%), Positives = 109/300 (36%), Gaps = 21/300 (7%) Query: 27 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLAASGAKGFV 85 K+G ++ + + K+ G ++I + +K I L V Sbjct: 45 KIGATYMTYNNTFYSVINEEISRILKEHGDQLIALDSAMSLKKQKEQIHYLIEQQVDAIV 104 Query: 86 ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145 I D + + +A + VI VD + + K V G + +++ Sbjct: 105 IAPVDYEGLEDSLKEAYRNRIPVIVVDTEVKHNKNITYSIV----SDNYDAGVQCAKDMM 160 Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205 +++ + ++ + + + R G D +++ ++ + + A Sbjct: 161 RKL-------DHANIVLLQHSTTRSGYLRIKGFEDTIQSNE--NYKVVKRMECDGQLEVA 211 Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSK 265 S + ++ +++ +ND + +G + A GI+G E+ Sbjct: 212 MPKMESFI--EEGIEFDVVMCLNDPSAMGAMAALSSNNILKDK-YVYGIDGTPEAKEMV- 267 Query: 266 AQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKKG 325 ++ SP G K+ E++Y +++ K E++ V +IT++N ++ +G Sbjct: 268 -VEGKMAATVAQSPKTFGKKAGEVIYKLFSQETIKNK-NEMSPVQIITKENV-QDYSTEG 324 >UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5Z738_9FIRM Length = 369 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 61/305 (20%), Positives = 110/305 (36%), Gaps = 29/305 (9%) Query: 26 LKLGFLVKQPEEPW---FQTEWKFADKAGKDLGFEVI-----KIAVPDGEKTLNAIDSLA 77 LK+G + K + F+ ++ ++K KD G +V D D+L Sbjct: 73 LKMGAIAKSFSNEFWRNFKNGYEQSEKVLKDAGVDVSIKIDGTTDESDEIGQQTMTDNLV 132 Query: 78 ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137 G ++ +A V A+G + I V+D G V A + G Sbjct: 133 NQGYNALMLSPISDSNLTASVDNAKGKKIPTINVND------GLIASADYFVGPDAYQNG 186 Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT 197 E + + K++ +G + I + AR RT G +K + Sbjct: 187 ELAAEWVSKQLGDKG-----DVAIVIGMAKAFAARERTAGFKGWIKDNN-SGLNVVAEQN 240 Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV 257 D A + A++ + Q+P++K I ND LG V A E DI+ +G++G+ Sbjct: 241 ADWDRQKAKELASTWIQQNPDLK--AIFCNNDDMALGVVEAVEEA---KKDILVVGVDGI 295 Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317 +A ++ ++E+ +A P T LI + N Sbjct: 296 G--EAYDSIRAGKLDATVDSFGYYMSQVATEVTLRVLAGQDIPR--VTHTPQALIDKTNV 351 Query: 318 KEELE 322 ++ + Sbjct: 352 DKDAK 356 >UniRef50_A5V1R8 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Roseiflexus RepID=A5V1R8_ROSS1 Length = 334 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 50/323 (15%), Positives = 104/323 (32%), Gaps = 14/323 (4%) Query: 5 TKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAG-KDLGFEV-IKIA 62 A + + ++G EPW Q A + E+ A Sbjct: 21 LAACTQPTSSPGGAGGDAPRRWRIGMSQANNAEPWHQAMNAQIAAAAARHPNIEIEFTDA 80 Query: 63 VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122 + + + +++ + G +I + + IVA A + VI +D + + Sbjct: 81 RQNNAQQIADVEAFLSKGIDLLIISPNEASPLTPIVASAFQRGIPVIVLDRKVKGEQ--- 137 Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182 + IG + G+ + +++ + T + R G + + Sbjct: 138 --YTMWIGADNRLIGRKAGEYTARWCREQQRSPCTVIELRGLEGSTPT-QERGDGFREGI 194 Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242 A P+ +I A A + +P+V ++ ND + + Q Sbjct: 195 AAN--PDVRIIASQNADWLAERADALARVLFEANPDVD--VVYAHNDPMGIAAFNVAKEQ 250 Query: 243 GFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302 G I+ IGI+ + A S+ ++ G ++ E + + PP+ Sbjct: 251 GRDTDAILFIGIDAL-ATSDGGIQAVRQGKLNVTYVYPTGGAEAIEWALRILEQRETPPR 309 Query: 303 FTEVTDVVLITRDNFKEELEKKG 325 + D +T N +K G Sbjct: 310 EI-ILDTEEVTTANADAMFQKYG 331 >UniRef50_A0JW81 ABC-type sugar transport system periplasmic component-like protein n=1 Tax=Arthrobacter sp. FB24 RepID=A0JW81_ARTS2 Length = 364 Score = 109 bits (271), Expect = 2e-22, Method: Composition-based stats. Identities = 57/324 (17%), Positives = 102/324 (31%), Gaps = 22/324 (6%) Query: 8 LAAIGLAAVMSQSA---------MAENLKLGFLVKQ-PEEPWFQTEWKFADKAGKDLGFE 57 +A +GLA S +A + L +G+ + W++T + +G Sbjct: 26 VATLGLAGCKSGAAAAADEEAKATGKGLVIGWSQRGISGSDWWKTLVEGGQAEASKVGAR 85 Query: 58 V-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116 + + A D + + +L G V+ DP V + + V+ V+ Sbjct: 86 LELLDANGDTVRQNADVQTLITKGVDVVVMNPNDPIGVGPSVQALKDAGIPVVTVNSSL- 144 Query: 117 NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR-RT 175 K D V G G+ ++ ++ D + ++ I D R Sbjct: 145 -DKSLVPDMFCYVAEDQEHTGSLAGEVAAQKALEKYGDSGQIKLVGIGGFPGDVLSDLRF 203 Query: 176 TGSMDALKAA--GFPEKQIYQVPT--KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDST 231 G M P ++ T A + +P++K +I M+D Sbjct: 204 NGFMAGWNRVMEKHPGVTTVKLETKYGEWKPDKALAPIRDVATANPDLK--VIYSMSDVM 261 Query: 232 VLGGVRATEGQGFKAADIIGIGIN-GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEML 290 G V+ + G II + G+ A+ E+ P G + M Sbjct: 262 HGGIVQGLQQAGLWGDGIIMASYDGGMGAIKEMVDDPKGPLQADASNQPWDQGVAAVRMA 321 Query: 291 YNWVAKDVEP-PKFTEVTDVVLIT 313 D P T D +IT Sbjct: 322 LAAFNGDQSQCPDKTNYIDTTVIT 345 >UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-binding protein n=9 Tax=Actinomycetales RepID=B5GEU2_9ACTO Length = 367 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 86/262 (32%), Gaps = 14/262 (5%) Query: 37 EPWFQTEWKFADKAGKDLGFEVIKIAVPDG-EKTLNAIDSLAASGAKGFVICTPDPKLGS 95 P+ E + G +++ + K ++ + L A GA VI + Sbjct: 93 NPFRIAETASLKDEARKRGVKLLAVNAQSQFSKQISDVQDLIAKGADLLVIAPLNSDGWE 152 Query: 96 AIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDV 155 ++ A + ++ +D + G D V + + G R ++ + +G Sbjct: 153 PVLRAASAKKIPIVTIDRKI--NAGPCKDYVSFIGSDFVEQGRRAADKMIEATGGKG--- 207 Query: 156 KESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQ 215 + + A + RT G D + P ++ T ++ Sbjct: 208 --EVAILLGAAGNNVTTERTKGFKDRVAEKA-PGLKVVFEQTGDFAREKGQSVTEQLIQS 264 Query: 216 HPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSL 275 P +K I ND LG V A + G K + + ++G K G+ + Sbjct: 265 KPGIKG--IYAENDEMGLGAVNALKSAGKKPGAVKIVTVDGT---RNAVKQIVDGWISGV 319 Query: 276 LPSPDVHGYKSSEMLYNWVAKD 297 + S G + + L + + Sbjct: 320 IESNPRFGPLAFQTLDTFTKGE 341 >UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional regulator n=6 Tax=Proteobacteria RepID=A1AYL7_PARDP Length = 348 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 53/295 (17%), Positives = 99/295 (33%), Gaps = 23/295 (7%) Query: 28 LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAI---DSLAASGAKGF 84 +G + K ++++ + G + A P L + +++ G +G Sbjct: 58 IGGVSKALTNEYWRSLGEGYKNMTDAQGVGLAYQAAPSEGDQLGQLSIAENMILQGYQGL 117 Query: 85 VICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQEL 144 ++ + A + V+ V+D + V G R Q Sbjct: 118 LVSPQTDNNLQPAMETAASRGIAVVNVNDAVIP------SATQYVGNVQRDNGVRVAQWF 171 Query: 145 YKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPG 204 G + A +RT G + AG Q+ + Sbjct: 172 IDNRPGGGKVAAIEG-----QPGVFAAGQRTDGFTTTITEAG--NFQVVASVPANWSREQ 224 Query: 205 AFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELS 264 A+DAA+++L QHP++ + ND LG V A + + G +G+ + Sbjct: 225 AYDAASTILQQHPDLIGF--YANNDGMALGVVEAVKAANL-QEQVSVFGTDGI--PDAYA 279 Query: 265 KAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 +A G++ P + G + E++ +A P T LIT DN + Sbjct: 280 SIRAGDLTGTVDSFPVLTGEVAMEVVLRLLAGQGIPRVV--ATPQALITADNVAD 332 >UniRef50_C1YRI6 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=3 Tax=Bacteria RepID=C1YRI6_NOCDA Length = 332 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 50/299 (16%), Positives = 106/299 (35%), Gaps = 16/299 (5%) Query: 19 QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP---DGEKTLNAIDS 75 + + E+ ++G + + ++ + D G E+ + + D + +D Sbjct: 29 GARLGEDGRIGVVY-MDAQGFYAGVREGMQNYADDSGRELQLLELNARGDASEESTFVDV 87 Query: 76 LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135 ++++ V+ V A + VI + + K T ++ + Sbjct: 88 VSSADVDALVLSPVSATASVPAVRLAHESGIPVICYNTCIEDEAAKEYVTSYILG-DPHE 146 Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195 G G + G + + V+ ++ +R G +AL A P+ +I Sbjct: 147 FGRLLGDAAADHFEDEGVEDPQIGVLNCEF--VEVCVQRREGFEEALFA-RLPDARIVAN 203 Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255 I A + +L HP++ + G +G VRA +G A +++ G + Sbjct: 204 QEG-ATIDEAVNVGERLLTAHPDLDAF--YGEAGGATMGAVRAVTNRGL-AGEVVVFGSD 259 Query: 256 -GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLIT 313 DA LS + ++ S G + E + +A + P +F + L T Sbjct: 260 MSTDAARALSDHR--ILKANVDISGIAVGLLAGETVERIIAGE-APEEFVTEAPIDLYT 315 >UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S5N2_9RHOB Length = 349 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 58/310 (18%), Positives = 107/310 (34%), Gaps = 25/310 (8%) Query: 14 AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAI 73 A A K+G + K ++++ + LG E + A L + Sbjct: 45 AKFGQMPVPAAGTKVGGVSKTLTNEYWRSLGEGYANVATKLGIEFVYQAAQSEGDQLGQL 104 Query: 74 ---DSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVM 130 ++L + G + V A + V+ V+D + + + V Sbjct: 105 AIAENLISQGFNALLFSPQTDANLIPAVEAATAAGVPVLNVNDAVIPSAANYVGNVQKGN 164 Query: 131 MAATKIGERQGQELYKEMQKRGWDVKESAVMAITA-NELDTARRRTTGSMDALKAAGFPE 189 G V I + A +RT G + + A G + Sbjct: 165 ------GVNVANWFIA------NRPDGGKVAVIEGQPGVYAAGQRTAGFTETITAGG--K 210 Query: 190 KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADI 249 ++ + AF+AA+++L Q+P++ + ND LG V A + G KA + Sbjct: 211 FEVVASVPANWSREEAFNAASTILQQYPDLIGF--YANNDGMALGVVEAVKAAG-KAEQV 267 Query: 250 IGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDV 309 G +G+ + +A G++ P + G + E+ +A P T Sbjct: 268 AVFGTDGIS--DAYAAVRAGDLTGTVDSFPVLTGEIAMEVALRLMAGQDLPRVV--ATPQ 323 Query: 310 VLITRDNFKE 319 LIT+DN + Sbjct: 324 ALITKDNVET 333 >UniRef50_C5EPY5 ABC-type sugar transport system n=2 Tax=Clostridiales RepID=C5EPY5_9FIRM Length = 332 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 54/298 (18%), Positives = 105/298 (35%), Gaps = 17/298 (5%) Query: 26 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP--DGEKTLNAIDSLAASGAKG 83 L++GF + + PW + +A G + I E + I L Sbjct: 42 LRVGFSQIETDNPWRTAQINSFREALIPNGMDFIYHEPERYTVEWQVEDIHRLIREKVDY 101 Query: 84 FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143 VI D + ++ A+ D+ VI +D + +D + + + ++GQ Sbjct: 102 LVIVPADLASLAPVLQDAKEADIPVILID-----QSAETIDQSYYISLISADY-LKEGQI 155 Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203 + ++ D V A+ R+ G AL+ +P +I + + D Sbjct: 156 CADLLAEKFGDTPCRIVEIYGTESSPGAQARSKGFHQALQQ--YPNMEIIDIEYGNFDRV 213 Query: 204 GAFDAANSML--VQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261 A A + L + +D LG ++A + G I + ING+ V Sbjct: 214 TAQKAMENALIKASTSGQPIDAVFAHSDEDGLGALQAIKVAGLAPGRISIVSINGIQDVC 273 Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 + A + G++ +P G+ + ++ P + +IT +N E Sbjct: 274 KAIIA--GEYLGTVESNPR-WGFIVASLIQQKERGYKPFPTV--MIPYRIITAENAAE 326 >UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermotoga lettingae TMO RepID=A8F472_THELT Length = 314 Score = 108 bits (270), Expect = 2e-22, Method: Composition-based stats. Identities = 39/308 (12%), Positives = 91/308 (29%), Gaps = 27/308 (8%) Query: 24 ENLKLGFLVKQPEEPWFQTE----WKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAAS 79 ++G + + W + D E + + + + + +L A Sbjct: 18 AKFRVGVAIPAADHGWTGGMVWWAQYAIKQYANDPDVEFYLVTAKEPSEQIAQVQALLAK 77 Query: 80 GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139 G VI + + I +A + I VD + + + G Sbjct: 78 GIDALVINPYESAPLTPICVQAFRDGIFTIIVDRGINSEEYN-----VYIAGDNYMYGYL 132 Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199 G+ + +++ +G V+ I R AL+ +P +I Sbjct: 133 AGKYIAEKLGGKGN------VVVIEGIPSTINTERVEAFKKALEP--YPNVKIIAQQPGY 184 Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259 AF+ ++L + P + + +D + G + A + G ++ G + Sbjct: 185 WSREKAFEIMQTLLTKFPNID--AVWTGDDDMLHGVLLALKQAGRDKNIVLVGGACEKNI 242 Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTE------VTDVVLIT 313 V + G P + + + + + + +T Sbjct: 243 VKMIMDGHP--LIGVDFTYPPNMISTAINLAVMALKGEHLNGFYQRGIPRKIILSTETVT 300 Query: 314 RDNFKEEL 321 ++N K+ Sbjct: 301 KENAKDYY 308 >UniRef50_B1YXY0 ABC-type sugar transport system periplasmic component-like protein n=1 Tax=Burkholderia ambifaria MC40-6 RepID=B1YXY0_BURA4 Length = 417 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 62/336 (18%), Positives = 109/336 (32%), Gaps = 40/336 (11%) Query: 19 QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLA 77 Q A LK+G+ PWF K A ++ G+ + +++A D ++ ID+ Sbjct: 60 QPANPNQLKIGWTDITLGNPWFVELIKGARQSAAKYGYSIDVQVADGDLQRQCAQIDNFV 119 Query: 78 ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137 V+ D SA + +A + V+ V L+ G Sbjct: 120 TRKMDVIVVDPTDTLGVSACINRAVDAGIPVVTV---GTTPDASARVLTTLLG-NPYASG 175 Query: 138 ERQGQELYKEMQKR------------GWDVKESAVMAITANELD-------TARRRTTGS 178 G+ + KE K G ES + + A +D T+ R Sbjct: 176 FEVGRYVAKEAGKDTPIDAAVVIGVLGNSTSESRINGLIAGIVDQRMRERNTSASREDAM 235 Query: 179 MDALK---------AAGFPEK--QIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGM 227 + + P+ + + G+ A +L H K I+ Sbjct: 236 LRGFELFQTLKKTGKLSAPDIKFNVLALGVGKWTEEGSLAATEDILSAH-GSKLNFILSE 294 Query: 228 NDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSS 287 ND LG +RA G + I G EL + + S S + G + Sbjct: 295 NDFMGLGALRAVRNMGKQGKIRIADAAGGYRG--ELDQIKKGNILVSGENSGEQTGVAAI 352 Query: 288 EMLYNWVAKDVEPP--KFTEVTDVVLITRDNFKEEL 321 E ++N + V+ +IT+ N +++ Sbjct: 353 EFIHNAFTRRVDANNLPMGSGFPPAIITQGNVDQKI 388 >UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AGX3_SEBTE Length = 319 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 53/298 (17%), Positives = 103/298 (34%), Gaps = 20/298 (6%) Query: 24 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI--KIAVPDGEKTLNAIDSLAASGA 81 + +K+G + ++ + KA + G + A D K +N +++ G Sbjct: 37 KKIKVGVSIANFDDTFLTYMMDGMKKAAEKEGDIELEFVDAKEDIAKQMNQVENFVTQGK 96 Query: 82 KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141 ++ D + A K++ V+ G D V K G Q Sbjct: 97 DVIIVVPVDTSAADPMTNAAVTNGTKIVYVNR----NPGNLPDGAYYVGSEEKKAGIMQM 152 Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201 + L ++M +G + V+ + + + +RT G + A +P+ +I T Sbjct: 153 EYLAEKMGGKG-----NIVILMGKLDNEGTIKRTEGVEEI--AKKYPDIKILDKQTGLWQ 205 Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261 + L ++ + IV ND LG V+A + G I IG++ Sbjct: 206 RTDGMAKTENWLNKYGN-EINAIVSNNDDMALGAVQALKDSGKTG--IFVIGVDAT--PD 260 Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 L+ A ++ D G + E+ + + L+T +N E Sbjct: 261 GLAALAAGDISATVFQDADGQGGGAVEVAKKAANGETVVKE--TWVPFKLVTPENINE 316 >UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clostridium tetani RepID=Q896U1_CLOTE Length = 324 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 58/323 (17%), Positives = 118/323 (36%), Gaps = 23/323 (7%) Query: 8 LAAIGLAAVMSQSAMAENLK-LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK---IAV 63 L+A LA +SA K + +VK + ++ + A+KA K+ G +I Sbjct: 15 LSAGVLAGCGQKSASDSTKKNIALIVKSTDSEYWLSVKAGAEKAAKEAGANIIFKGPATE 74 Query: 64 PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPM 123 D + +N ++ G V+ D K V A + ++ VD + K Sbjct: 75 QDIQGEVNIVEDAINQKVDGIVLAASDTKALIQPVENAINAKIPLVTVDSGVDSDK---- 130 Query: 124 DTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALK 183 + K + + + K G + V + TA +R G D + Sbjct: 131 -VASFIATDNEKAASQAADVCAELIGKSGKVGVVNFV-----PGVSTAVQREKGFRDGMS 184 Query: 184 AAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQG 243 ++ + +D A +L +P+VK I N+ + LG +A +G+G Sbjct: 185 KHS--GIELLKTQYSQSDKSKAMAITEDILTANPDVK--AIFAANNRSALGVAQALKGKG 240 Query: 244 FKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKF 303 A + + + E+ + ++ +P G + + + + + + Sbjct: 241 V-AGKVKVVAFDA--DPDEIKGIEDGSITALIVQNPYKMGEEGVKNVLALMKGETVEKRI 297 Query: 304 TEVTDVVLITRDNFKEELEKKGL 326 T V ++T++N + +K L Sbjct: 298 D--TGVTIVTKENINDPEVQKVL 318 >UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Actinomycetales RepID=C7QJZ0_CATAD Length = 371 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 57/295 (19%), Positives = 102/295 (34%), Gaps = 22/295 (7%) Query: 36 EEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLG 94 P+ TE K LG ++I+ A D + I+ + A GAK ++ + Sbjct: 93 SNPFRSTETDSITNQAKSLGVKLIQRNANADVNAQNSQIEDMIAQGAKVLIVAPENSDGL 152 Query: 95 SAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWD 154 +A+A+ + V+ +D G + + Q Q ++ Sbjct: 153 GPALAEAKAKKIPVLTIDR---TVTGTACSDFIAFIGSNFYG---QAQIAADDLATATGS 206 Query: 155 VKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLV 214 + A+++ T + RT G D +KA +P + T D ML Sbjct: 207 QAKVAILSGT-PGNNVTTDRTNGFQDQVKA-KYPNMTVVASQTGKFDQTDGQSVMAQMLQ 264 Query: 215 QHPEVKHWLIVGMNDSTVLGGVRATEGQGFK-AADIIGIGINGVDAVSELSKAQATGFYG 273 +P + + ND LG ++A G K DI + I+G + A Y Sbjct: 265 ANPGIT--AVYAENDEMALGAIQAITAAGKKPGKDIKIVSIDGTQ--QAVQDVAAGTIYA 320 Query: 274 SLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKKGLGG 328 + +P G + L + V V+I +F + ++ L G Sbjct: 321 DVETNPR-FGPLAFSSLQAFFGTSG-------VASKVIIKDSHFTQANAQQALSG 367 >UniRef50_B5YAA5 ABC transporter sugar-binding protein n=2 Tax=Dictyoglomus RepID=B5YAA5_DICT6 Length = 331 Score = 108 bits (269), Expect = 3e-22, Method: Composition-based stats. Identities = 58/327 (17%), Positives = 112/327 (34%), Gaps = 26/327 (7%) Query: 1 MHKFTKALAAIGLAAVMSQSAM-AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG---- 55 M KF + + +M+ +A + L ++ K P F+ A K ++L Sbjct: 1 MKKFLMIFFIVVIFLLMATTAQTPKKLVFAWIPKALNNPVFELGRDGAFKRAEELSKKGP 60 Query: 56 --FEVIKIA--VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAV 111 EV+ +A D + ++ + A G I DP ++ KA + V+ Sbjct: 61 YKVEVLYVASVASDATEQARVVEDVVARKVDGIAISCNDPTALIDVINKAVEAGIPVMTF 120 Query: 112 DDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTA 171 D A + + + G+ + L + M G + V Sbjct: 121 D-----ADSPKSKRFTYLGVNNYEGGKWAAKLLVRAMGTSGDVALLTGV-----PGALNL 170 Query: 172 RRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDST 231 R G D +K +P+ +I +DI + ++P+++ W VG+ Sbjct: 171 EERMRGFKDEIKK--YPKIKIVTTVACYDDINRGVQVVEETMQKYPKLRGWFFVGLWPLL 228 Query: 232 VLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLY 291 G + KA + + + + EL + G + GY + ++LY Sbjct: 229 AERGSMPLWEKAAKAKKVFTVAFDTL--PVELQLLKEGYLCGLVGQKYWGWGYDAIDILY 286 Query: 292 -NWVAKDVEPPKFTEVTDVVLITRDNF 317 V + P D ++T+ N Sbjct: 287 RKVVNNEKFPDWIDSGMD--IVTQKNV 311 >UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Proteobacteria RepID=A5G0N2_ACICJ Length = 345 Score = 108 bits (268), Expect = 3e-22, Method: Composition-based stats. Identities = 55/281 (19%), Positives = 95/281 (33%), Gaps = 18/281 (6%) Query: 24 ENLKLGFLVKQPE-EPWFQTEWKFADKAGKDLGFEVIKIAVPDGEK--TLNAIDSLAASG 80 L +GF + P+ E K A K + + + ++++ G Sbjct: 54 SKLVVGFSQSESNANPFRAGETKSVRDAAKAFHVRRLIYTNAHSNQSRQVADVENMINQG 113 Query: 81 AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT-KIGER 139 A+ +I D A+A + ++ +D + A K D + + K GE Sbjct: 114 AQALIIAPLDSTGLQPAFAQAAAKHIPILTLDRR--TAGSKCSDYLSFLGSNFYFKQGEI 171 Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199 +EL K G + + N ++ A RT G LKA +P +I T + Sbjct: 172 DARELAK---ATGGHAMVAEIQGAYGNSVEVA--RTKGFAAGLKA--YPGMKIVTEQTGN 224 Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259 A + +L+ HP V + D+ G + A G K + + I+G Sbjct: 225 WFTTDAQKVMSQILLAHPNVN--AVYAQADTMAFGAITALRDAGKKPGQVKIVSIDGTR- 281 Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300 + Y +P G + L NW P Sbjct: 282 -QGVQDIVDGWIYADDETNPR-FGPIAFHELQNWFDGKPVP 320 >UniRef50_A8RPB7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPB7_9CLOT Length = 363 Score = 108 bits (268), Expect = 4e-22, Method: Composition-based stats. Identities = 50/275 (18%), Positives = 96/275 (34%), Gaps = 11/275 (4%) Query: 35 PEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKL 93 E+ +F+ + A KDLG+E+ + D K +++ A G G I + Sbjct: 73 QEDQFFKLMSAGYEAAAKDLGYEIQLSNVTNDQMKETELVNTYTAQGVAGIAISPLSATI 132 Query: 94 GSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGW 153 + + +K+ + + ++ ++ G+ ++++ Sbjct: 133 SPEALKVSSDKGVKICVANTAMDS----YPFSIAAYTSDNYAFCKQTGEIAVDFIKEKYG 188 Query: 154 DVK-ESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSM 212 D K E ++ +T+ R G + AL G +I A A M Sbjct: 189 DEKIELGILQFKTQIPETSAERVNGFLAALDEGGV-NYEIVSNQDA-WLQDTAIAKAGDM 246 Query: 213 LVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFY 272 L +P++ ++ ND +G V A E G +A G + + + +L KA Sbjct: 247 LAANPDID--IMFAANDGGTIGAVMAVENAG-QAGKTFVFGTDASEQIVDLLKADNDILQ 303 Query: 273 GSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVT 307 P GYK+ E L + + V Sbjct: 304 AVTGQDPFQIGYKTVETLVQSIEGKDVADQGKTVI 338 >UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XS39_9DEIN Length = 320 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 58/306 (18%), Positives = 110/306 (35%), Gaps = 16/306 (5%) Query: 3 KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA 62 + A A+ A A+ L + L+K P++ A + +I A Sbjct: 2 RLLTASTAVLAALAWGTLGFAQQLTIAALMKTTANPFWGAMEAGIRDAAQKGNVNLILQA 61 Query: 63 V---PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA- 118 V D E LNA +L + V+ + + +A ++ ++ +D A Sbjct: 62 VASETDVEPQLNACLNLLQRKPQALVVAAINSVNLLPCLKQANQQNIPIVDLDGNLDPAV 121 Query: 119 -KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177 + + + + + G + + ++ +G+ K + + N T R G Sbjct: 122 LQREGVKIAFSISSDNRRAGASAAEYVVSKL-GQGFSGKVLVIEGLAGNV--TGAARRDG 178 Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237 + LK P QI D A + N L +HP++ I ND+ LG V Sbjct: 179 FTERLKQIA-PNAQIVATLPGDWDRLKAANITNDTLQRHPDL--AAIYCANDTMALGAVE 235 Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 A G K ++ +G +G + +A S+ P + G ++ E + + + Sbjct: 236 AVFAAGKK---VLVVGTDGNS--DAVKSIRAGRLNASVAQLPFLVGSRAIENVLKVIKGE 290 Query: 298 VEPPKF 303 PK Sbjct: 291 QVDPKI 296 >UniRef50_C0C2X7 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2X7_9CLOT Length = 324 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 16/301 (5%) Query: 24 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEK-TLNAIDSLAASGAK 82 E + +G V + + K+ G++ + + + +++ G Sbjct: 38 EEISIGVTVMTLANTIWAETCTAIEDNCKENGWKCTVVDCSSTAQTQITQVENFIQKGVD 97 Query: 83 GFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQ 142 VI D ++ +A +KVI+ D +++ + +IG++ Sbjct: 98 AIVINPTDQAALETVMKEAMDAGIKVISWD---IDSDAADCCLLVDNYNVGYEIGKQAAD 154 Query: 143 ELYKEMQKRGWDVKESAVMAITANELDT-ARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201 + + + + V + E +R G DA+ P ++ + Sbjct: 155 WIEDNLDGK------AEVCILDYPEAGAEVIKRADGINDAITELS-PNSKVVAQVSHQGS 207 Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261 G A ++L +P+ + ++ + D +G A + G K + +G Sbjct: 208 TDGGMQAMENVLQSNPDCR--VVCSVGDGGAMGANEALKAAGIKGEEAGIFSADGTTEFL 265 Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEEL 321 A LL P ++ L + + T+V +I N E Sbjct: 266 SKIAAGEPCKMSILLDDPLSKAASITDTLDKLLKDEKVEKDLY--TNVQVIDESNLSEYY 323 Query: 322 E 322 + Sbjct: 324 K 324 >UniRef50_B2JP41 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Burkholderia RepID=B2JP41_BURP8 Length = 322 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 51/308 (16%), Positives = 101/308 (32%), Gaps = 16/308 (5%) Query: 9 AAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGE 67 AA+ +AA ++ A + + LGF E W + KD G + A E Sbjct: 15 AALTVAASVNSFAGDKQITLGFSQVGAESAWRTANTVSVKTSAKDAGINLKFSDAQQKQE 74 Query: 68 KTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVP 127 + AI S A ++ +A+ + VI + D+ ++ K + V Sbjct: 75 NQIKAIRSFIAQKVDVIAFSPVVESGWEPVLTEAKNAKIPVI-LTDRSIDVKDTSLY-VT 132 Query: 128 LVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGF 187 ++ + G R G+ L + + + + + A R G M+ +K Sbjct: 133 MIGSDFLEEGRRAGRWLEERYKNEAGPINIAELQGTVG--SAPANDRHAGLMEVIKND-- 188 Query: 188 PEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA 247 P+ +I + + G + + + ++ ND LG ++A E G K Sbjct: 189 PKFKIIASQSGDFTLAGGKQVMEA-FAKTYGKQINVVYAHNDDMALGAIQAMEEAGIKPG 247 Query: 248 DIIGI--------GINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 + + G + A + + G L + ++ V + Sbjct: 248 KDVSVVSFDATKGGFEAMIAGKINVDVECSPLLGPQLMTAVKDVVAGKQLPKRIVTNETV 307 Query: 300 PPKFTEVT 307 P Sbjct: 308 FPMSVAAQ 315 >UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_BACUN Length = 919 Score = 107 bits (267), Expect = 5e-22, Method: Composition-based stats. Identities = 53/260 (20%), Positives = 102/260 (39%), Gaps = 20/260 (7%) Query: 59 IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 I+ AV D ++ I L A G ++ + + +V +A + VI VD + ++ Sbjct: 63 IRTAVDDNDRQAKDIRELIAEGVDLLIVAPNEATPITPVVEEAYNRGIPVIVVDRKILSD 122 Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 K V +IG+ G+ + + +G V+ S ++ A R G Sbjct: 123 K-----YTAYVGADNYEIGKAVGEYVANVLHGQGDVVEISGLV-----GSTPAVDRHQGF 172 Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238 + A+ A +P ++ V + A + +++L + P + L+ ND G A Sbjct: 173 VKAISA--YPGIRLLAVEDGAWLQLKAGEKMDTLLSRFPHID--LVYAQNDRMAAGAYAA 228 Query: 239 TEGQGFKAADIIGIGINGVDAVS-ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 +G + D+ IGI+ + + K A + + G + ++ + + K Sbjct: 229 AAREGREK-DMRFIGIDALSGKDYGVEKVLAGELDATFIYP--TGGDRVMQIAMDILNKR 285 Query: 298 VEPPKFTEVTDVVLITRDNF 317 P + T VV RDN Sbjct: 286 DFPRETILGTSVV--DRDNA 303 >UniRef50_D2QME7 Two component transcriptional regulator, AraC family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QME7_9SPHI Length = 940 Score = 107 bits (267), Expect = 6e-22, Method: Composition-based stats. Identities = 43/314 (13%), Positives = 105/314 (33%), Gaps = 23/314 (7%) Query: 13 LAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGK-DLGFEVI-KIAVPDGEKTL 70 +A S + + ++GF + W +T + + ++ + A + + Sbjct: 38 MAGCQS-ATKTKTYRIGFSQCTGGDEWRKTMLHDMKRELTFHPNYTLLYEDAENSTTRQI 96 Query: 71 NAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVM 130 + I +L G ++ + + ++ + VI +D + + Sbjct: 97 SQIQALIDQGIDLLIVSPNEVAPFAKVIEDVFKRGIPVILLDRKIETESYN-----AYIG 151 Query: 131 MAATKIGERQGQELYKEMQKRGWDVKESAVMAITA-NELDTARRRTTGSMDALKAAGFPE 189 +IG G + ++ +G ++ I A+ R G ++ L+ +P Sbjct: 152 GDNVEIGRLAGVFIGNHLKGKG------RIVEIWGLPSSSPAQERHRGLLEELRK--YPG 203 Query: 190 KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADI 249 Q+ + + + L +V L+ ND LG + +G + Sbjct: 204 IQVVKELNGQWERDTVGRVVAAELNTLKDVD--LVFAHNDVMALGAYAVCKQKGIEKKLD 261 Query: 250 IGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDV 309 +GI+ + + +A G + P G ++ E +A + +V + Sbjct: 262 F-VGIDALPGPNAGMQAITDGILKASFLYP-TGGEEAIETATRILAGKSVKRE--QVLNS 317 Query: 310 VLITRDNFKEELEK 323 + I N + + Sbjct: 318 IQIDGSNVRALKAQ 331 >UniRef50_C5CZB4 Periplasmic binding protein/LacI transcriptional regulator n=24 Tax=Bacteria RepID=C5CZB4_VARPS Length = 315 Score = 107 bits (266), Expect = 6e-22, Method: Composition-based stats. Identities = 47/285 (16%), Positives = 102/285 (35%), Gaps = 19/285 (6%) Query: 20 SAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPD---GEKTLNAIDSL 76 + + + + + K + ++Q A++A KDL +V +K ++ + + Sbjct: 22 AQAQQEIYIPLVSKGFQHQFWQAVKSGAEQAAKDLKVKVTFEGPETEAMVDKQIDMLAAA 81 Query: 77 AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136 A + D + ++ KA+ + V+A D + V Sbjct: 82 LAKKPQAIGFAALDSQAAIPLLKKAQAAKIPVVAFDSGVDSDIP-----VTTTTTDNKAA 136 Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196 ++ + + K G + + T R G ++ +K+A +P +I V Sbjct: 137 AALAADKMAEMIGKSG-----EVALVVHDQTSRTGVDRRDGFVNRIKSA-YPNIKIVSVQ 190 Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256 D + + S+L P +K I G N+ + +G V + ++ ++ IG + Sbjct: 191 YGGGDQLKSTEITKSILQASPNLKG--IFGANEGSAIGVVNGVKEM-KRSGKVVIIGYDS 247 Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301 G++ +P GYK+ EM + + P Sbjct: 248 GKQQKNAI--MDGSMAGAITQNPVGMGYKTVEMAVKAIKGEKLPK 290 >UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VSF4_9CORY Length = 306 Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 63/313 (20%), Positives = 104/313 (33%), Gaps = 30/313 (9%) Query: 9 AAIGLAAVMSQS---AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVP 64 + L+ A + + + + P+F A +LG + + A Sbjct: 12 GILTLSGCSGTPRDVPAAGSRAVTLALSTEKNPFFLQVRYGAQAKANELGIDLTVLDAGD 71 Query: 65 DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124 D E +D +SG V+ D + + V++ + I VD D Sbjct: 72 DAEVQAAQLDD-VSSGV--AVVNPADSEALAPAVSQLNEKGIPAITVDRTI-----TGAD 123 Query: 125 TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA 184 L+ T+ G L K ++ +G E V+ +A R G A+ Sbjct: 124 VAALIDSNNTEGGAAAASVLAKAIRAQG----EVIVLRGIEGSSSSA-ERYEGFTQAM-- 176 Query: 185 AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT-EGQG 243 A P +I D A D +L HP+V I ND LG V A E G Sbjct: 177 AEHPRVRIVAAEAADFDRDTARDLVTDLLADHPDVAG--IFAENDEMALGAVDALGERAG 234 Query: 244 FKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKF 303 D+ +G +G + K + ++ G + E + + Sbjct: 235 ---KDVKVVGFDGTEEGVRAVKNRK--LVATIAQQSSELGATAIEQAGKLLDGEAAESVH 289 Query: 304 TEVTDVVLITRDN 316 T V ++TRDN Sbjct: 290 TPVM---VVTRDN 299 >UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Oribacterium sinus F0268 RepID=C2KYA7_9FIRM Length = 281 Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 48/300 (16%), Positives = 99/300 (33%), Gaps = 23/300 (7%) Query: 28 LGFLVKQPEEPWFQTEWKFADKAGKDLGFE----VIKIAVPDGEKTLNAIDSLAASGAKG 83 + + + +T K ++LG+ I D ++ I+ G G Sbjct: 1 MALFMSHMTNEFVKTLSSSVQKEAEELGYTGDSFKIYDGKNDVATQVSQIEQAVTLGVDG 60 Query: 84 FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143 +I V A +KV+ ++ + + V G ++ Sbjct: 61 IIIEPVSTDGIVKAVKDAEKVGVKVVILNQRISDQNA----ADTFVGADNESTGAALMKK 116 Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203 + +++ +G V+ M R+ G L A +P+ ++ + D Sbjct: 117 VMEDLDGKGNIVELLGPMGSDGQ-----VGRSKGFDSVL--AEYPDVKVIASDSADWDTA 169 Query: 204 GAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSEL 263 A + L +V ND +G +A + G I G++ L Sbjct: 170 KALTLTENWLTSS---DIQAVVAQNDGMAVGAAQAIKEAGLT-DKIKVYGVDATS--DGL 223 Query: 264 SKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEK 323 + G G++ + G S+++ N + P + V+ T++N E L+K Sbjct: 224 NAIVNGGMTGTVSQGTENQGKISADLCSNLIYGQSVPKEVIATN--VVYTKENVNEILKK 281 >UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGX0_9BACT Length = 497 Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 87/255 (34%), Gaps = 19/255 (7%) Query: 62 AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121 A DG+ IDS+ A V+ + + + +A + VI D + Sbjct: 64 AENDGQCQARQIDSMIARKVDLIVVAPDNVNDVTPAIERAYRAHIPVILFDRKVKTP--- 120 Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181 + + G + L ++ +G V+ + + + R G + Sbjct: 121 --HYTASIGGDNVEAGREVARFLASKLDGKGTVVEITGL-----KDASPVIERHRGFHEV 173 Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241 +K +P ++ + + + + A + L + + G +D +G E Sbjct: 174 MK--NYPGIKVVTLES-NWKLERAQELMKQYLDKGGHADG--VFGHSDLGAIGAFLEAER 228 Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301 +G ++ +GI+G+ E G + + P G K E+ N + P Sbjct: 229 RGIDK-QMLIVGIDGLPGEWEGVDRVKRGQFAASYVYP-TQGEKIMELAMNILQGK--PY 284 Query: 302 KFTEVTDVVLITRDN 316 K V L T +N Sbjct: 285 KKDNVMKSFLATPEN 299 >UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI family n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JQF4_AGRRK Length = 337 Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 40/292 (13%), Positives = 84/292 (28%), Gaps = 17/292 (5%) Query: 14 AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKA---GKDLGFEVIKIAVPDGEKTL 70 A+ A A+ K+ +V+ + A + D Sbjct: 20 TALTGAPAYAKTFKIAAIVQSLNTEYNVLWADAAKSHPALADGTATLTVLDGRQDVLTQS 79 Query: 71 NAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVM 130 N D+ + D G+ + +A+ + V + + + Sbjct: 80 NLFDTAITEKYDAIIFIPVDIDAGNEPIERAKAAGIPVFGSNTVVSKTE----LYDAYIN 135 Query: 131 MAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEK 190 + GE + + K G D K + + +R G + LK Sbjct: 136 SNDVEAGEMLAKAVID---KAGKDAKVVVLEGMLGQSAQ--VQRLEGINNVLKQNS--GV 188 Query: 191 QIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADII 250 I + T + A + L H + + ++ ND +G + G + Sbjct: 189 TILEQNTANWSRAEAITLMENFLTSHGD-QVQGVLAENDEMAVGAIEGIRNHGLDPKKLP 247 Query: 251 GIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302 G++G+ E K S+L + ++ + + D P+ Sbjct: 248 VAGVDGIKDALEAVKRGEQTM--SILQDASGQSQGAIDLALSKLVGDTYKPR 297 >UniRef50_C7IMM2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IMM2_9CLOT Length = 352 Score = 107 bits (266), Expect = 7e-22, Method: Composition-based stats. Identities = 59/315 (18%), Positives = 119/315 (37%), Gaps = 23/315 (7%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGF--EVIKIAVPDGEKTLNAIDS 75 S + +++ + + K + P F + ++ G++LG E + D + ++S Sbjct: 47 SNNTQKKDIIIAMVPKSLDNPVFLDALEQGERVGRELGIKVEWLGPMQSDTNVQIAIVES 106 Query: 76 LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135 L G VI DP ++ KA ++V D ++ + Sbjct: 107 LIRRRVDGIVISCIDPAKIKPVIDKAVKAGIQVATFDSDSPDS-----SRLFYCGTDNYA 161 Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITAN-ELDTARRRTTGSMDALKAAGFPEKQIYQ 194 G G+ L KE +++G D + V+ +TA+ E + +R G ++ ++ G I Sbjct: 162 AGVACGKALIKEAKEKGMDKQVLDVLLMTADKESNNLNKRLNGFLETVRHGGIK-LNITD 220 Query: 195 VPTKSNDIPGAFDAANS-MLVQH-PEV---KHWLIVGMNDSTVLGGVRATEGQGFKAADI 249 ++D+ A D + + + P+V ++ G + G Sbjct: 221 TLYCNDDVNIAGDMLENHIRTGNTPDVFFSTGGWPFVSPPESLPGFHAWCKNGGIS---- 276 Query: 250 IGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDV 309 I ++ V E A+ + + + G S + LY + + P F + T + Sbjct: 277 --ILVDTYYPVLEA--AEKGLADALVGQNFNKMGELSIKNLYKAIRGEKVPSSFID-TGL 331 Query: 310 VLITRDNFKEELEKK 324 L + NF + LE K Sbjct: 332 ELGDKSNFAKLLEGK 346 >UniRef50_A1SYE6 Transcriptional regulator, periplasmic binding protein of LacI family protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1SYE6_PSYIN Length = 313 Score = 107 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 54/324 (16%), Positives = 109/324 (33%), Gaps = 24/324 (7%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQ--TEWKFADKAGKDLGFEV 58 M + G+ + S ++ A L + + P+F E A + G Sbjct: 1 MKNIISKIMIAGIVLLGSVTSKAFALTVAISLVDLSNPFFIMLAEEISAQLEAQVEGQLT 60 Query: 59 IKI--AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116 I + + D + I I + AR + V AVD + Sbjct: 61 IYVHSSAYDLNQQNQQIKDFINKEVDIIFISASASDAIEPSIISAREKGIIVAAVD---I 117 Query: 117 NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTT 176 ++G + + + G+ Q L + +G E A++ + + R Sbjct: 118 ESRGADIS----ITSDNFQAGQLSCQYLVDRLGGKG----EIAIINGW-TTISSTSNRVA 168 Query: 177 GSMDALKAAGFPEKQIYQ-VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG 235 G D LK +P ++ S G ++ +++++P ++ + +ND LG Sbjct: 169 GCRDLLKK--YPGIKLVSYSHNGSGSFSGGLESMTYLMLEYPNLE--AVFAINDLAALGA 224 Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295 A + G II ++G E K + + + P K+ + + Sbjct: 225 EEAAKQSG--NNKIIIASVDGSPLFLEHLKLKDSLLVATAAQFPRAIAQKAVILALQKLR 282 Query: 296 KDVEPPKFTEVTDVVLITRDNFKE 319 + TE+ L+T+ N + Sbjct: 283 -ETSAGHTTELIPTELVTKQNVSQ 305 >UniRef50_D1AIH6 Galactose-binding protein n=3 Tax=Bacteria RepID=D1AIH6_SEBTE Length = 353 Score = 106 bits (265), Expect = 8e-22, Method: Composition-based stats. Identities = 61/305 (20%), Positives = 113/305 (37%), Gaps = 20/305 (6%) Query: 23 AENLKLGFLVKQPEEPWFQTEWKF----ADKAGKDLGFEVIKIAVPDG----EKTLNAID 74 + +K+G + + ++ + + +D+ K+ G E I I DG + +D Sbjct: 39 KKEIKIGVALYKFDDTFISSVKDAINEISDEKSKETG-EKITINAVDGQGQQATQNDQVD 97 Query: 75 SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134 + G + D S I+ KA+ + V+ + + V D + V A Sbjct: 98 TFITQGYDVIAVNMVDRTAASVIIQKAQAAGIPVVFFNREPVAEDMAKWDQLYYVGAKAE 157 Query: 135 KIGERQGQELYKEMQ-----KRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPE 189 + G QG+ + + D K V+ A RT S+ AL+AAGF Sbjct: 158 ESGTIQGEVAADYFKANPDADKNKDGKIQYVILEGEPGHQDALLRTEYSIKALEAAGFQV 217 Query: 190 KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAAD- 248 ++ T + + + + K L++ ND LG + A + G+ + Sbjct: 218 DKLASD-TALWQRANGQEKMAAWISAFGD-KIELVLANNDDMALGAIEALKAAGYLSDGK 275 Query: 249 -IIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVT 307 I IG++ + KA YG++L G ++ Y K+ K +T Sbjct: 276 FIPVIGVDATAPAKDSLKA--GLLYGTVLNDARGQGKGIFDIAYALAKKENPAEKVQGIT 333 Query: 308 DVVLI 312 D + Sbjct: 334 DGKYL 338 >UniRef50_C9Y9X5 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y9X5_9BURK Length = 318 Score = 106 bits (265), Expect = 1e-21, Method: Composition-based stats. Identities = 57/285 (20%), Positives = 96/285 (33%), Gaps = 21/285 (7%) Query: 11 IGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGE--K 68 I +A SA + ++ + A KAG+ G + I++A GE K Sbjct: 12 IAMATAGLMSAAMAETTIAYITNGNTNEGWTLINGGAKKAGQKAGVKFIELAAEKGELSK 71 Query: 69 TLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPL 128 L ++ + I D + + KA +KV+AVD AK Sbjct: 72 QLAIVEDMITRKVNAIAIAPVDSAGIAPAINKALAAGIKVVAVDTGISGAK-----ITSY 126 Query: 129 VMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFP 188 V K QG ++++ ++ + T + R G +D L A Sbjct: 127 VATDNIKAAMVQGDWTAEQIKD-----GDTVIYVTGDQGQSTGQERKKGFLDGLNAKR-K 180 Query: 189 EKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAAD 248 ++ +V T + D A + + L +P K +I D LG A G KA D Sbjct: 181 NVKVVEVAT-TWDQTMAQNGVETALRANPTAK--VIACAWDGGALGAKAALMAAGKKAGD 237 Query: 249 IIGIGINGVDAVSE-----LSKAQATGFYGSLLPSPDVHGYKSSE 288 + G +G + A A + ++E Sbjct: 238 VKIAGFDGSPGGLDMMKQGWQSANAAQMLAKIGQVGVETAIAAAE 282 >UniRef50_UPI00019034CB methyl-accepting chemotaxis protein n=1 Tax=Rhizobium etli GR56 RepID=UPI00019034CB Length = 854 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 51/281 (18%), Positives = 97/281 (34%), Gaps = 16/281 (5%) Query: 5 TKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEVIKIAV 63 T LA+I LA ++A +G + ++ + + D GK + G +++ Sbjct: 3 TATLASIALA---ISVSVANAQTIGVSMTNLDK-FREMLVNGVDSHGKTISGLKLVTQNA 58 Query: 64 P-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122 D E + A ++ D LG + A + +I ++ N P Sbjct: 59 NGDNELQKKQVQQFVADKVDAIIMMLSDGDLGPQMTKIAADAGIPLIYINTTPSNLLDLP 118 Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182 + V +V G + +++ ++ +G V+ + AR RT D + Sbjct: 119 DNQV-VVASDEKDSGTLETKQVCSLLKGKG-----RVVVLMGEVFHVAARTRTQDIADVI 172 Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242 +I + A L VK ++ ND LG +RA + Sbjct: 173 ATPECKGLEIVEQQAAYWSRDYADQQMQEWLAA--GVKFDAVIANNDEMALGAIRAMKKA 230 Query: 243 GFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHG 283 D++ G++ D L+ A ++L S G Sbjct: 231 NIPMKDVVVAGVDATD--DALAAMVAGDLDVTILQSAVGQG 269 >UniRef50_B9XKI8 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=bacterium Ellin514 RepID=B9XKI8_9BACT Length = 318 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 55/309 (17%), Positives = 109/309 (35%), Gaps = 28/309 (9%) Query: 17 MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG--------FEVIKIAVPDGEK 68 + + ++ +G + K P FQ A A K+LG + D +K Sbjct: 17 STHAQTKKSYTIGLVAKSQGNPVFQAARVGAVDAAKELGKKYDINIKIDWRTPNEEDAQK 76 Query: 69 TLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPL 128 AI+ L +GA G + D + + A + V D + Sbjct: 77 QAEAIEQLVLAGADGIAVSCSDANKLTDAINSAVKNGVPVATFD-----SDAPASKRFVT 131 Query: 129 VMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFP 188 + K GE+ +EL K M +G + ++R G +A A +P Sbjct: 132 YGVDDIKCGEQVMEELAKVMGGKG-----VIAILAGNQNAPNLQKRVQGVKNA--AKKYP 184 Query: 189 EKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAAD 248 I A ++ +P++ W ++G ++ ++A Sbjct: 185 GITIRDTYYHKETPQDAAAKVEQVMQANPDITGWAMIGGWPLFTDNALK------WQAGT 238 Query: 249 IIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTD 308 I + ++ + +EL+ ++ L GY+S+E L N + P +V+ Sbjct: 239 IKCVSVDAL--PAELAYLKSGHVQILLAQQVYEWGYRSTEHLINKIHLKKNPENVKDVSP 296 Query: 309 VVLITRDNF 317 ++ +T++N Sbjct: 297 LIPVTKENV 305 >UniRef50_C5EU51 D-galactose-binding periplasmic protein n=4 Tax=Clostridiales RepID=C5EU51_9FIRM Length = 350 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 54/303 (17%), Positives = 114/303 (37%), Gaps = 18/303 (5%) Query: 22 MAENLKLGFLVKQPEEPWFQTEWKFADKAGKD----LGFEV---IKIAVPDGEKTLNAID 74 ++++G L+ + ++ + T + K+ G +V I + + ++ Sbjct: 34 KKNSIRIGVLLYRGDDTFIGTLRAGLEDKAKEYEQKTGIKVKLDILDSKGSQNTQNSQVE 93 Query: 75 SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134 L + G I + D S I+ KA V+ + + V + + V A Sbjct: 94 RLISLGCDALCINSVDRSSASIIIDKAMDAGTPVVFFNREPVEEDMNRWEKLYYVGADAK 153 Query: 135 KIGERQGQELYKEMQK--RGWDVKESAVMAITANELDTARR----RTTGSMDALKAAGFP 188 + QG L +K R D + +++ E +T+ + RT S+ LK G P Sbjct: 154 ESAVLQGDALVDAYRKDSRTLDANGNGLVSYVLLEGETSHQDSLIRTEWSIQTLKDGGVP 213 Query: 189 EKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAAD 248 ++I + D A L ++P + L+V ND LG + A G A Sbjct: 214 LEKITGGI-ANWDRSQASALMEQWLKEYPG-QIELVVSNNDDMALGAIDAMNRAGIGANS 271 Query: 249 IIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTD 308 I +GI+G + + + ++ + + ++ ++ ++ D +P + + Sbjct: 272 IKVVGIDGT--PVGIKALEEGTLFATVESDKERYAQAIFDIAWS-LSLDQDPKSVVPLVN 328 Query: 309 VVL 311 Sbjct: 329 GKY 331 >UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9K631_BACHD Length = 327 Score = 106 bits (264), Expect = 1e-21, Method: Composition-based stats. Identities = 47/303 (15%), Positives = 94/303 (31%), Gaps = 24/303 (7%) Query: 24 ENLKLGFLVKQPEEPWFQTEWKFADKA-GKDLGFEVI-KIAVPDGEKTLNAIDSLAASGA 81 + +GF + + + EV+ A D + + ++ L A G Sbjct: 44 GKMVIGFAHPDFNDMFLGFLLAGVQAYEAEQTNVEVVYVDAENDSDGQIAQVEDLIAQGV 103 Query: 82 KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141 + D IV +A+ + V+ ++ V + V + + G Q Sbjct: 104 DAIMAIPVDLIATEFIVDRAQQAGVPVVLINRDSVERE------DAYVGSDSLQAGTIQM 157 Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARR-RTTGSMDALKAAGFPEKQIYQVPTKSN 200 +E+ ++ +G + + TA+ RT G+ + +P ++ T Sbjct: 158 EEVAAVLKGKGK------IAIMNGQMGHTAQINRTLGNKQVVDQ--YPGMEVVIEGTGGW 209 Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260 + S + +V ND +G + A E G +++ GI+G Sbjct: 210 SREKGKELMESWIESGQTFD--AVVANNDEMAIGAIMAAEEAGI-VDELVFAGIDGT--P 264 Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320 L S+ G E + + IT+ N E Sbjct: 265 DALDYMSKGKLTISVFQDAKGQGQTGLEQAIKLAKGESA--EKMTNIPYETITKRNVDEY 322 Query: 321 LEK 323 +K Sbjct: 323 KKK 325 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional... 274 3e-72 UniRef50_P02924 L-arabinose-binding periplasmic protein n=117 Ta... 266 9e-70 UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional... 264 2e-69 UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-bindi... 264 3e-69 UniRef50_C4XAG8 L-arabinose-binding periplasmic protein n=11 Tax... 259 9e-68 UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostri... 255 1e-66 UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD 250 4e-65 UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepI... 250 5e-65 UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic com... 250 7e-65 UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic com... 249 1e-64 UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium bot... 247 3e-64 UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional... 247 4e-64 UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH 245 2e-63 UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional... 245 2e-63 UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional... 244 3e-63 UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=... 243 5e-63 UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic com... 242 2e-62 UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Prote... 241 2e-62 UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Therm... 241 2e-62 UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-bin... 239 1e-61 UniRef50_A9CF36 ABC transporter, substrate binding protein (Suga... 237 3e-61 UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Prot... 237 4e-61 UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyado... 236 8e-61 UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n... 236 9e-61 UniRef50_B8D164 ABC-type sugar transport system, periplasmic com... 236 9e-61 UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional... 236 1e-60 UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protei... 235 1e-60 UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clo... 235 2e-60 UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding... 235 2e-60 UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostri... 235 2e-60 UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gamm... 232 1e-59 UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkh... 231 2e-59 UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional... 231 2e-59 UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Ta... 231 2e-59 UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotr... 231 2e-59 UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional... 231 2e-59 UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerot... 231 3e-59 UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional... 231 3e-59 UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport ... 229 1e-58 UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional... 228 2e-58 UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostri... 228 2e-58 UniRef50_B3T6P5 Putative periplasmic binding protein and sugar b... 228 2e-58 UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional... 228 2e-58 UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional... 228 3e-58 UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 ... 227 3e-58 UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_... 226 6e-58 UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional... 226 7e-58 UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional... 226 7e-58 UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n... 225 1e-57 UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostr... 225 2e-57 UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding... 225 3e-57 UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 T... 224 3e-57 UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostri... 224 3e-57 UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chtho... 224 4e-57 UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminoc... 224 5e-57 UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional... 223 6e-57 UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional... 223 8e-57 UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional... 223 9e-57 UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional... 223 1e-56 UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S4... 222 1e-56 UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter... 222 1e-56 UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Cor... 222 1e-56 UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpe... 222 2e-56 UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional... 221 2e-56 UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Paste... 221 2e-56 UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional... 221 2e-56 UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional... 221 3e-56 UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional... 220 4e-56 UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding... 220 5e-56 UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional... 220 5e-56 UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Rumin... 220 6e-56 UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic suga... 220 7e-56 UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional... 220 8e-56 UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transpo... 219 9e-56 UniRef50_B2IIE3 Periplasmic binding protein/LacI transcriptional... 219 1e-55 UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostri... 219 1e-55 UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional... 219 1e-55 UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional... 218 3e-55 UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothe... 218 3e-55 UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geo... 218 3e-55 UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostri... 217 4e-55 UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea f... 217 4e-55 UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasm... 217 5e-55 UniRef50_UPI0001B4C057 putative D-ribose-binding protein compone... 216 6e-55 UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales Rep... 216 9e-55 UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizo... 216 1e-54 UniRef50_B0NBQ1 Putative uncharacterized protein n=1 Tax=Clostri... 215 2e-54 UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=... 215 2e-54 UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional... 215 2e-54 UniRef50_UPI000185D1D6 putative DNA-binding response regulator/s... 215 2e-54 UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8... 215 2e-54 UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional... 215 2e-54 UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n... 215 2e-54 UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional... 214 3e-54 UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional... 214 4e-54 UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional... 214 4e-54 UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional... 214 5e-54 UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia... 214 5e-54 UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional... 213 7e-54 UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-b... 213 7e-54 UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacte... 213 8e-54 UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Pr... 213 8e-54 UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Ba... 213 8e-54 UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional... 213 9e-54 UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostri... 213 9e-54 UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE 213 9e-54 UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding... 212 1e-53 UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional... 212 1e-53 UniRef50_P39325 ABC transporter periplasmic-binding protein ytfQ... 212 1e-53 UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter... 212 1e-53 UniRef50_B0PA90 Putative uncharacterized protein n=1 Tax=Anaerot... 212 2e-53 UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clo... 212 2e-53 UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sora... 212 2e-53 UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostri... 212 2e-53 UniRef50_C6V848 D-ribose-binding periplasmic protein n=11 Tax=Ga... 212 2e-53 UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional... 212 2e-53 UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional... 211 2e-53 UniRef50_B1Y299 Periplasmic binding protein/LacI transcriptional... 211 3e-53 UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional... 211 3e-53 UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional... 211 3e-53 UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantel... 211 4e-53 UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea D... 211 4e-53 UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-bindin... 210 4e-53 UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding prot... 210 4e-53 UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotro... 210 5e-53 UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional... 210 5e-53 UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport ... 210 5e-53 UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional... 210 5e-53 UniRef50_B9L479 Periplasmic binding protein/LacI transcriptional... 210 6e-53 UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-bindi... 210 8e-53 UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3... 209 1e-52 UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-... 209 1e-52 UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor h... 209 1e-52 UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alph... 208 2e-52 UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gamma... 208 2e-52 UniRef50_D2QME7 Two component transcriptional regulator, AraC fa... 208 2e-52 UniRef50_UPI0001B51147 putative ABC transporter substrate-bindin... 207 4e-52 UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional... 207 4e-52 UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding pro... 207 4e-52 UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding... 207 4e-52 UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacte... 207 4e-52 UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostri... 207 4e-52 UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Prot... 207 4e-52 UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacte... 207 5e-52 UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transc... 207 5e-52 UniRef50_D1AIH6 Galactose-binding protein n=3 Tax=Bacteria RepID... 207 5e-52 UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Glu... 207 6e-52 UniRef50_C0C2H6 Putative uncharacterized protein n=1 Tax=Clostri... 206 6e-52 UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protei... 206 8e-52 UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional... 206 9e-52 UniRef50_A6DJR9 Periplasmic binding protein/LacI transcriptional... 206 1e-51 UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-bindi... 205 1e-51 UniRef50_B1ZN56 Periplasmic binding protein/LacI transcriptional... 205 2e-51 UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter au... 205 2e-51 UniRef50_B5YAA5 ABC transporter sugar-binding protein n=2 Tax=Di... 205 2e-51 UniRef50_Q1M6L8 Putative substrate-binding component of ABC tran... 205 2e-51 UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostri... 205 2e-51 UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminoc... 205 2e-51 UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea l... 205 3e-51 UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette tran... 205 3e-51 UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthroba... 205 3e-51 UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostri... 204 4e-51 UniRef50_C2KUT6 Galactoside ABC superfamily ATP binding cassette... 204 5e-51 UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-bindin... 203 6e-51 UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional... 203 6e-51 UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia... 203 6e-51 UniRef50_A6M1Q7 D-galactose-binding periplasmic protein n=4 Tax=... 203 7e-51 UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobact... 203 9e-51 UniRef50_C6D2L3 Periplasmic binding protein/LacI transcriptional... 203 9e-51 UniRef50_C5EU51 D-galactose-binding periplasmic protein n=4 Tax=... 202 1e-50 UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasm... 202 1e-50 UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional... 202 1e-50 UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostri... 202 2e-50 UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostri... 202 2e-50 UniRef50_C8P3T0 D-galactose-binding periplasmic protein n=1 Tax=... 201 2e-50 UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyr... 201 2e-50 UniRef50_Q3JM30 L-arabinose ABC transporter, periplasmic L-arabi... 201 3e-50 UniRef50_C7G6J4 Putative galactose ABC transporter, periplasmic ... 201 3e-50 UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostri... 201 3e-50 UniRef50_Q2T4S7 L-arabinose ABC transporter, periplasmic L-arabi... 201 3e-50 UniRef50_C6D2L0 Periplasmic binding protein/LacI transcriptional... 201 3e-50 UniRef50_UPI00016C56B8 bifunctional carbohydrate binding and tra... 201 4e-50 UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostri... 200 4e-50 UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9... 200 5e-50 UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Rei... 200 6e-50 UniRef50_B5XZZ5 Sugar ABC transporter, periplasmic sugar-binding... 200 6e-50 UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DS... 199 7e-50 UniRef50_Q2YI92 Putative two-component system sensor histidine k... 199 8e-50 UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostri... 199 8e-50 UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional... 199 9e-50 UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Ta... 199 9e-50 UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional... 199 9e-50 UniRef50_A9GMT2 Put. D-ribose-binding periplasmic protein n=2 Ta... 199 1e-49 UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 1820... 199 1e-49 UniRef50_A6W303 Periplasmic binding protein/LacI transcriptional... 199 1e-49 UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Str... 199 1e-49 UniRef50_A0R773 Sugar ABC transporter substrate-binding protein ... 199 2e-49 UniRef50_B2JDH5 Periplasmic binding protein/LacI transcriptional... 199 2e-49 UniRef50_C5EPY5 ABC-type sugar transport system n=2 Tax=Clostrid... 198 2e-49 UniRef50_B2SY92 Periplasmic binding protein/LacI transcriptional... 198 2e-49 UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor h... 198 2e-49 UniRef50_C6L1I6 ABC sugar transport system, periplasmic protein ... 198 2e-49 UniRef50_A1WJI7 Periplasmic binding protein/LacI transcriptional... 198 2e-49 UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostri... 198 2e-49 UniRef50_Q7CTE3 ABC transporter, substrate binding protein (Ribo... 198 3e-49 UniRef50_C4FY38 Putative uncharacterized protein n=1 Tax=Catonel... 198 3e-49 UniRef50_B5GKD2 D-ribose ABC transporter permease protein n=1 Ta... 197 4e-49 UniRef50_C9LY79 Periplasmic ribose-binding protein n=1 Tax=Selen... 197 4e-49 UniRef50_A9BGQ4 Periplasmic binding protein/LacI transcriptional... 197 4e-49 UniRef50_B2JP41 Periplasmic binding protein/LacI transcriptional... 197 4e-49 UniRef50_A8RTB0 Putative uncharacterized protein n=1 Tax=Clostri... 197 5e-49 UniRef50_B0P6G6 Putative uncharacterized protein n=2 Tax=Bacteri... 197 5e-49 UniRef50_UPI0001C31742 periplasmic binding protein/LacI transcri... 197 5e-49 UniRef50_B5ZNU3 Periplasmic binding protein/LacI transcriptional... 197 6e-49 UniRef50_A9AWB1 Periplasmic binding protein/LacI transcriptional... 197 6e-49 UniRef50_C0C2G7 Putative uncharacterized protein n=1 Tax=Clostri... 197 6e-49 UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_... 196 6e-49 UniRef50_A8SGU5 Putative uncharacterized protein n=1 Tax=Faecali... 196 6e-49 UniRef50_Q0BAE1 Periplasmic binding protein/LacI transcriptional... 196 6e-49 UniRef50_A9HN30 Periplasmic binding protein/LacI transcriptional... 196 6e-49 UniRef50_A5V1R8 Periplasmic binding protein/LacI transcriptional... 196 7e-49 UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodo... 196 7e-49 UniRef50_A7II12 Periplasmic binding protein/LacI transcriptional... 196 8e-49 UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette tr... 196 8e-49 UniRef50_A9AWB0 Periplasmic binding protein/LacI transcriptional... 196 1e-48 UniRef50_Q0SII4 ABC ribose transporter, substrate-binding compon... 195 1e-48 UniRef50_C6CXV0 D-galactose/D-glucose ABC transporter, periplasm... 195 2e-48 UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional... 195 2e-48 UniRef50_B5CR03 Putative uncharacterized protein n=1 Tax=Ruminoc... 195 2e-48 UniRef50_C3MI97 Putative solute-binding component of ABC transpo... 195 2e-48 UniRef50_C5EQH1 D-allose-binding periplasmic protein n=1 Tax=Clo... 195 2e-48 UniRef50_B1LAH5 Periplasmic binding protein/LacI transcriptional... 195 2e-48 UniRef50_A1STY3 Transcriptional regulator, periplasmic binding p... 195 2e-48 UniRef50_A1WJM2 Periplasmic binding protein/LacI transcriptional... 194 2e-48 UniRef50_A1WNV9 Periplasmic binding protein/LacI transcriptional... 194 3e-48 UniRef50_B9JQE2 D-ribose-binding periplasmic protein n=1 Tax=Agr... 194 3e-48 UniRef50_A6BKA3 Putative uncharacterized protein n=6 Tax=Clostri... 194 4e-48 UniRef50_C1D9L7 RbsB protein n=1 Tax=Laribacter hongkongensis HL... 194 4e-48 UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminoc... 194 4e-48 UniRef50_B8ZUE5 Putative D-ribose-binding protein n=2 Tax=Mycoba... 194 4e-48 UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostri... 194 4e-48 UniRef50_B2JTD1 Periplasmic binding protein/LacI transcriptional... 194 4e-48 UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI fa... 194 5e-48 UniRef50_C6C3I7 Periplasmic binding protein/LacI transcriptional... 193 7e-48 UniRef50_B7GJK7 ABC-type sugar transport system, periplasmic com... 193 7e-48 UniRef50_Q4ZU91 Periplasmic binding protein/LacI transcriptional... 193 8e-48 UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional... 193 8e-48 UniRef50_A8RQW7 Putative uncharacterized protein n=1 Tax=Clostri... 193 9e-48 UniRef50_C8WV69 Periplasmic binding protein/LacI transcriptional... 193 9e-48 UniRef50_A4XG54 Periplasmic binding protein/LacI transcriptional... 193 9e-48 Sequences not found previously or not previously below threshold: >UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Firmicutes RepID=C7REM6_ANAPD Length = 316 Score = 274 bits (702), Expect = 3e-72, Method: Composition-based stats. Identities = 52/299 (17%), Positives = 105/299 (35%), Gaps = 24/299 (8%) Query: 17 MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDS 75 S++ ++K+G + P+F + + ++A E VI A D N ++ Sbjct: 41 ASETKTDGDMKIGVSLSTLNNPFFVSIREGVEEAAGKENVETVITDAQNDSSTQNNQVED 100 Query: 76 LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135 L G VI D + V KA ++ VI VD + V + + Sbjct: 101 LITQGVDLIVINPVDSTAIATSVEKANEANIPVICVDR-----GSDQGELVSFIASNNVE 155 Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195 G+ G+ + +++ + ++ + + R R G +A + + Sbjct: 156 GGKLAGEYILEKVGENAEVIQLEGI-----PGASSTRERGEGFEEATNG----KINLLAS 206 Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255 T + D ++L HP+VK + ND LG A + G D+ +G + Sbjct: 207 QTANFDRAEGMTVMENLLQAHPDVK--AVFCQNDEMALGASEAIKASG---KDVTIVGFD 261 Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314 G + + + ++ P G + E ++ + + LI + Sbjct: 262 GNED--AIKAVEEGNLSATVAQKPKEMGKLAIETAIKYLKGEEVEETVDS--PLELIKK 316 >UniRef50_P02924 L-arabinose-binding periplasmic protein n=117 Tax=Gammaproteobacteria RepID=ARAF_ECOLI Length = 329 Score = 266 bits (680), Expect = 9e-70, Method: Composition-based stats. Identities = 329/329 (100%), Positives = 329/329 (100%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK Sbjct: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 Query: 61 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG Sbjct: 61 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120 Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD Sbjct: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180 Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE Sbjct: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240 Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP Sbjct: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300 Query: 301 PKFTEVTDVVLITRDNFKEELEKKGLGGK 329 PKFTEVTDVVLITRDNFKEELEKKGLGGK Sbjct: 301 PKFTEVTDVVLITRDNFKEELEKKGLGGK 329 >UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRM5_ALIAD Length = 321 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 65/334 (19%), Positives = 114/334 (34%), Gaps = 40/334 (11%) Query: 1 MHKFTKALA-----AIGLAAVMS--------------QSAMAENLKLGFLVKQPEEPWFQ 41 M ++T LA A LA + +A + +KLGF V P+F Sbjct: 1 MKRWTAMLAVGVVAAGVLAGCGTSVSTGSQKTNLSNTGTASTKPIKLGFAVSTLNNPFFV 60 Query: 42 TEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAK 100 + K LG +V I D LN ++ L ++ D + S V + Sbjct: 61 AMSNGVQEEAKKLGVQVTILNGNNDPATQLNQVEDLIQQHVNAIILNPTDSQSLSTAVEQ 120 Query: 101 ARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAV 160 A + VI +D + + + + G+ EL K + +G V+ V Sbjct: 121 ANRAHIPVITLDRSV-----TKGNVACFIASNSVEAGKMAADELIKALGGKGQVVELQGV 175 Query: 161 MAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVK 220 + R G + + A P ++ T + D A + ++L HP ++ Sbjct: 176 I-----GTSAEADREKGFDEEIGKA--PGIRVVARQTANFDRSQALNVMQNILQAHPNIQ 228 Query: 221 HWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPD 280 + ND LG ++A + G +I +GI+G Y + P Sbjct: 229 G--VFAQNDEMALGALKAIQEAGKH--NIKIVGIDGEKEAVN--DVHKGLLYADIAQQPV 282 Query: 281 VHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314 G E V + P + + L+ + Sbjct: 283 QEGILGVEYAVKLVEGEKVPKQVNS--PLHLVEK 314 >UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-binding protein n=7 Tax=Bacteria RepID=B9KA11_THENN Length = 326 Score = 264 bits (675), Expect = 3e-69, Method: Composition-based stats. Identities = 64/306 (20%), Positives = 115/306 (37%), Gaps = 14/306 (4%) Query: 17 MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDS 75 ++Q K+ ++ PWF + A + + LG+E I + D K D+ Sbjct: 25 LAQEQQKPKGKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDA 84 Query: 76 LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135 + A+G + D A V +A+ + V VD V + Sbjct: 85 IIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGIN----ARGLAVAQIYSDNYY 140 Query: 136 IGERQGQELYKEMQKRGWDVKES-AVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194 G G+ K ++++ D KE + R+ G + +PE ++ Sbjct: 141 GGVLMGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQ--YPEFKMVA 198 Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254 + D A+ +L HPE+K I ND+ LG ++A E G DI G Sbjct: 199 QQSAEFDRDTAYKVTEQILQAHPEIK--AIWCGNDAMALGAMKACEAAGRT--DIYIFGF 254 Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314 +G + V K + +++ P + + E ++ + P+ VT V L+TR Sbjct: 255 DGAEDVINAIK-EGKQIVATIMQFPKLMARLAVEWADQYLRGERSFPEIVPVT-VELVTR 312 Query: 315 DNFKEE 320 +N + Sbjct: 313 ENIDKY 318 >UniRef50_C4XAG8 L-arabinose-binding periplasmic protein n=11 Tax=Enterobacteriaceae RepID=C4XAG8_KLEPN Length = 326 Score = 259 bits (663), Expect = 9e-68, Method: Composition-based stats. Identities = 299/326 (91%), Positives = 316/326 (96%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGF+VIK Sbjct: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFDVIK 60 Query: 61 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVI VDDQFVNAKG Sbjct: 61 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVITVDDQFVNAKG 120 Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180 KPM++VPLVMMAA++IG RQGQELYKEMQKRGWDVK++AVMAITA+ELDTARRRTTGS+D Sbjct: 121 KPMESVPLVMMAASEIGARQGQELYKEMQKRGWDVKDTAVMAITADELDTARRRTTGSID 180 Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240 ALKAAGFP+ QIY+VPTKSNDIPGAFDA NSMLVQHP+VKHWLIVGMND+TVLGGVRATE Sbjct: 181 ALKAAGFPDAQIYRVPTKSNDIPGAFDAGNSMLVQHPQVKHWLIVGMNDNTVLGGVRATE 240 Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300 GQGFKA D+IGIGINGVDAV+ELSKAQ TGFYGSLLPSPD+HGYK+SEMLYNWV K VEP Sbjct: 241 GQGFKAPDVIGIGINGVDAVNELSKAQPTGFYGSLLPSPDIHGYKTSEMLYNWVTKGVEP 300 Query: 301 PKFTEVTDVVLITRDNFKEELEKKGL 326 PKFT VTDVVLITRDNFKEEL KKGL Sbjct: 301 PKFTAVTDVVLITRDNFKEELAKKGL 326 >UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S312_9CLOT Length = 346 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 58/310 (18%), Positives = 110/310 (35%), Gaps = 20/310 (6%) Query: 16 VMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAID 74 S+ + +G + P+F KA + G E+ I A D + ++ Sbjct: 56 AGSEEGSGKKYVIGLAMNTQTNPFFVDVKDGVQKAADEHGIELYITDAQDDPTIQMKDVE 115 Query: 75 SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134 +L +I T D + + + V +D + + + + A Sbjct: 116 NLITKKPDAIIIDTCDSDAIVSSIEACNEAGIPVFTMDR-----EANGGEVISHIGYDAI 170 Query: 135 KIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194 K G GQ L + +G V+ +M + A+ R+ G + +K P+ +I Sbjct: 171 KSGRMAGQYLVDTLGGKGKIVEIQGIM-----GTNVAQNRSQGFNEVMKDN--PDMEIVA 223 Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254 D ++L +PE+ ND +LG + A E G +I+ IG Sbjct: 224 CQVADFDRAKGMSVMENILQANPEIDGL--YAANDEMLLGALEAMEAAGRT-DEIVKIGC 280 Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314 + +D + KA ++ P G Y+++ P + D L+T+ Sbjct: 281 DAIDDTLDAMKA--GKVDATIAEPPFFLGKAILNTAYDYLEGKQVEP--YVILDNQLVTQ 336 Query: 315 DNFKEELEKK 324 D + K+ Sbjct: 337 DTVDSLVTKE 346 >UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD Length = 304 Score = 250 bits (640), Expect = 4e-65, Method: Composition-based stats. Identities = 60/326 (18%), Positives = 110/326 (33%), Gaps = 35/326 (10%) Query: 1 MHKFTKALAAIGLAAVMSQS-----------AMAENLKLGFLVKQPEEPWFQTEWKFADK 49 M K A+ L + + S ++K+G V + P+F + K Sbjct: 1 MKKTLTVFTALALLFLSACSLEPPEWAKPNKEKGTDIKIGLSVSTLKNPFFVSLKNGVVK 60 Query: 50 AGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKV 108 K G EVI A D K N ++ L G +I D S V A + V Sbjct: 61 EAKKQGIEVIVVDAQDDSAKQTNDVEDLLQQGVDALLINPADSSAISTAVQSANSLGIPV 120 Query: 109 IAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANEL 168 + +D N K + LV K G+ + +++ K + V Sbjct: 121 VTLDRSAENGKVE-----TLVASDNVKGGQMAADFIVEQLGKGAKVAELEGV-----PGA 170 Query: 169 DTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMN 228 R R +G + + T D + ++L +P+++ + N Sbjct: 171 SATRERGSGFHKTADD----KLNVIAKQTADFDRTKGLNVMENLLQGNPDIQ--AVFAHN 224 Query: 229 DSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSE 288 D LG + A G +I+ +G +G + + QA ++ P++ G + + Sbjct: 225 DEMALGAIEAIRSSG---KEILVVGFDGNED--AVKAVQAGDMSATIAQQPELIGKLAVQ 279 Query: 289 MLYNWVAKDVEPPKFTEVTDVVLITR 314 + + T + L T+ Sbjct: 280 AARDILNGKKVEK--TIPAPLKLETK 303 >UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepID=RBSB_BACSU Length = 305 Score = 250 bits (639), Expect = 5e-65, Method: Composition-based stats. Identities = 59/316 (18%), Positives = 102/316 (32%), Gaps = 34/316 (10%) Query: 1 MHK---FTKALAAIGLAAVM---------SQSAMAENLKLGFLVKQPEEPWFQTEWKFAD 48 M K L+ L A S S + +G V P+F + K + Sbjct: 1 MKKAVSVILTLSLFLLTACSLEPPQWAKPSNSGNKKEFTIGLSVSTLNNPFFVSLKKGIE 60 Query: 49 KAGKDLGFEVI-KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMK 107 K K G +VI A D K + ++ L G +I D S V A + Sbjct: 61 KEAKKRGMKVIIVDAQNDSSKQTSDVEDLIQQGVDALLINPTDSSAISTAVESANAVGVP 120 Query: 108 VIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANE 167 V+ +D + LV K GE + ++ K + V Sbjct: 121 VVTIDR-----SAEQGKVETLVASDNVKGGEMAAAFIADKLGKGAKVAELEGV-----PG 170 Query: 168 LDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGM 227 R R +G + + Q+ + D ++L HP+++ + Sbjct: 171 ASATRERGSGFHNIADQ----KLQVVTKQSADFDRTKGLTVMENLLQGHPDIQ--AVFAH 224 Query: 228 NDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSS 287 ND LG + A G DI+ IG +G L+ + ++ P++ G ++ Sbjct: 225 NDEMALGALEAINSSG---KDILVIGFDGNKD--ALASIKDRKLSATVAQQPELIGKLAT 279 Query: 288 EMLYNWVAKDVEPPKF 303 E + + Sbjct: 280 EAADDILHGKKVQKTI 295 >UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic component n=12 Tax=Proteobacteria RepID=Q2SMT1_HAHCH Length = 309 Score = 250 bits (638), Expect = 7e-65, Method: Composition-based stats. Identities = 59/324 (18%), Positives = 115/324 (35%), Gaps = 16/324 (4%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-I 59 M K ++ A +A+ + S A +LK+G + ++ + + A KD +V I Sbjct: 1 MKKLALSVLA---SAMFAGSVAAADLKIGVSMAVFDDNFLTALRNGIETAAKDKSVDVQI 57 Query: 60 KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 + + LN I + ASG ++ D +I + A + +I V+ Q +N Sbjct: 58 EDGKNEVGTQLNQIQNFIASGVDAIIVNPVDTDATVSISSDAEAAGIPLIYVNRQPINVN 117 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 P + V G Q +E+ + + +G V+ + A +RT Sbjct: 118 QLPDNQ-AFVASNEEVSGTLQTEEVCRLLGGKGN-----VVVMMGELSNQAAIQRTKDIH 171 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 D +K ++ T D + L ++ ++ ND +G ++A Sbjct: 172 DVIKRKECSGMKVVAEQTAEWSRLKGNDLMTNWLSA--GLEFDAVISNNDEMAIGAIQAL 229 Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 + G K ++ GI+ K + ++ S G + + + Sbjct: 230 KASGRKMDSVVVAGIDATPDALAAMK--SGDLDVTVFQSAKGQGAGAVDAAVRLAKGENV 287 Query: 300 PPKFTEVTDVVLITRDNFKEELEK 323 K L+T N + L K Sbjct: 288 DQKVW--VPFELVTPANLDKYLSK 309 >UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic component n=13 Tax=Bacteria RepID=Q7MEU9_VIBVY Length = 292 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 59/315 (18%), Positives = 119/315 (37%), Gaps = 24/315 (7%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 M K ++A L + +S A A++ + +V P+F T A+ K+LG+ +I Sbjct: 1 MKKLATLISAALLTSTVSLGAQAQD-TMAIVVSTLNNPFFVTMKDGAETRAKELGYNLIV 59 Query: 61 -IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 + D K L+ ++ L G K +I D S + A + V+ +D Sbjct: 60 LDSQNDPSKELSNVEDLTIRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDR-----G 114 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 D V + GE G + +++ ++ ++ + AR R G M Sbjct: 115 ASRGDVVSHIASDNVVGGEMAGNFIVEKVGEKAKVIQLEGIA-----GTSAARERGEGFM 169 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 +A+K + ++ D + ++L +P+V+ + ND LG +RA Sbjct: 170 NAVKGSH---MELLASQPADFDRTKGLNVMENLLAANPDVQ--AVFAQNDEMALGALRAI 224 Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 + G +++ +G +G D ++ PD+ G E + + Sbjct: 225 QASG---KEVMIVGFDGTDDGIAAVN--RGKLAATIAQQPDLIGALGIETADKVLKGEQV 279 Query: 300 PPKFTEVTDVVLITR 314 + ++T+ Sbjct: 280 ED--YIPVPLKVVTK 292 >UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium botulinum RepID=B1KZY7_CLOBM Length = 336 Score = 247 bits (632), Expect = 3e-64, Method: Composition-based stats. Identities = 56/342 (16%), Positives = 116/342 (33%), Gaps = 36/342 (10%) Query: 1 MHKF---------TKALAAIGLAAVMSQSAM-------AENLKLGFLVKQPEEPWFQTEW 44 M K T + + L S+ + + + +G + +F Sbjct: 1 MKKTKKILAVLLSTLLIGSAILTGCGSKESSVDKKDKDPKEVTVGLSLSSLSNAFFIGME 60 Query: 45 KFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARG 103 K ++G ++I A D K L+ I+ L ++ D V KA+ Sbjct: 61 KGVKDKTSEIGCKLIETNANGDIAKQLSDIEDLITKKVDILIVNALDADAIVPAVKKAKE 120 Query: 104 YDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAI 163 ++ +I +D + + K+GE+ + + K ++ +G + + V Sbjct: 121 ANIPIIFLDRGANSEDM-----TTFLETDNVKMGEQAAELILKALKDKGLNG-GNVVEIE 174 Query: 164 TANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWL 223 AR R G + + E +I + + + ++L +P++ Sbjct: 175 GLQGTSAARDRGKGFHNVMDK--HKEVKIVAKQAGDFNQEKSMNVMQNILQANPKID--A 230 Query: 224 IVGMNDSTVLGGVRATEGQGF-----KAADIIGIGINGVDAVSELSKAQATGFYGSLLPS 278 + G ND +G +A I +GI+G++ E + S+ Sbjct: 231 VFGHNDDCTVGAEKAIIASNRMKPAGDKEHIFVVGIDGINQAIE--SVKKGNIDVSISQD 288 Query: 279 PDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320 P G ++ E+ + + T IT+DN +E Sbjct: 289 PIGMGVQAVEVGLKAIKGEQVEKHIY--TKFFPITKDNATDE 328 >UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Proteobacteria RepID=A6VWG6_MARMS Length = 314 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 63/318 (19%), Positives = 122/318 (38%), Gaps = 17/318 (5%) Query: 2 HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI 61 F K+ A L + S S +A N + + + P+F+ + AD K+LG++ + Sbjct: 4 KTFLKSCLAATLLTLASTSVLASNGLIAIITPSHDNPFFKAGAEGADAKAKELGYDTLVA 63 Query: 62 AVP-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120 + D K I++ A AK ++ D + + + + D + Sbjct: 64 SHDGDVNKQNQLIETAIARQAKAVILDNADADASIGSLERLKKAGIPAFLYDREIN---- 119 Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180 K V ++ + + G++ + M G V + A+ R+ G D Sbjct: 120 KTGIAVTQIVSNNFQGAQLAGEKFAELMGDGGEY-----VELLGPESDTNAQVRSEGFHD 174 Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240 L FPE ++ + + AF S+L +P +K ++ NDS LG A + Sbjct: 175 ILD--NFPEFKMVARQSANWSQTEAFSRMESILQANPNIKG--VITGNDSMALGAEAALQ 230 Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300 G K D+ +G +G+D V + + + +++ + +E ++ Sbjct: 231 AAGRK--DVFIVGFDGLDYVRDSI-IKGSNIKATIMQPAYAQAQRVAEQADLYIRTGSTG 287 Query: 301 PKFTEVTDVVLITRDNFK 318 ++ D VLI N K Sbjct: 288 LPEKQLMDCVLIDSSNAK 305 >UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH Length = 309 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 57/321 (17%), Positives = 100/321 (31%), Gaps = 29/321 (9%) Query: 1 MHKFTKALAAIGLAAVMSQS----------AMAENLKLGFLVKQPEEPWFQTEWKFADKA 50 M +AA Q +G V P+F T K A++ Sbjct: 5 MKSLMAGALVFAVAACSKQGPETAQAPDAGTDGGKPAIGLAVSTQSNPFFVTLKKGAEEE 64 Query: 51 GKDLGFEVI-KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVI 109 + G +I A D K + +I+ L K ++ D V A + V+ Sbjct: 65 AQKQGLTLITVDAQDDPAKQIASIEDLIQKKVKVILVNPTDSDAVVGAVKAANAAGIPVV 124 Query: 110 AVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELD 169 +D + V G+ + L +++ +G V+ + Sbjct: 125 TLDRSVNGGE-----VASHVASDNVAGGKMAAEYLLEKIGNQGDVVELEGI-----PGAS 174 Query: 170 TARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMND 229 AR R G D + A + ++ D ++L + VK + ND Sbjct: 175 AARERGQGFHDVIDQA--KDVKVVGRQPADFDRAKGLSVMENILQANKNVKG--VFAHND 230 Query: 230 STVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEM 289 LG V+A E G K D+ +G + D KA ++ P + G + + Sbjct: 231 EMALGAVQALEAAGMK--DVTVVGFDATDDAVNAVKA--GKMSATVAQKPKLIGKTAVDA 286 Query: 290 LYNWVAKDVEPPKFTEVTDVV 310 + D+V Sbjct: 287 AKKIIDGQPVDKSLPVPLDLV 307 >UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QJX6_9SPHI Length = 317 Score = 245 bits (625), Expect = 2e-63, Method: Composition-based stats. Identities = 51/310 (16%), Positives = 104/310 (33%), Gaps = 20/310 (6%) Query: 14 AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNA 72 + SQ + L +G + + + DK + G E+I A K + Sbjct: 27 TSETSQDGEGKKLVVGATMLSMQNEFIVNVHDEMDKEAQKAGIELITVDAERSALKQVEQ 86 Query: 73 IDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMA 132 ++S A ++ + + S VAKA + +I V+ + + V Sbjct: 87 VESFIAQKVDAIIMNPCEVEASSPAVAKALAAKIPIINVNSETSSKPS------AFVGSD 140 Query: 133 ATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQI 192 + + + ++ +G VM +R G+ + LK +P ++ Sbjct: 141 DVESARIAMKFIADKLGGKGN-----VVMMHGYMGQAAQIKREQGAREILKQ--YPNLKL 193 Query: 193 YQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGI 252 T D A + + + + + ND LG V+A G K +I + Sbjct: 194 LAHQTGEWDRAKAMSLMENWIQSY-GSQINAVFAHNDEMGLGAVKALTDAGLK-DKVIVV 251 Query: 253 GINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLI 312 I+ + L + ++ + + G K+ P + L+ Sbjct: 252 SIDAI--PDALQAVKKGSLDATVFQNAEQQGAKAIATAIKAAKGQ--PFDKETLVPFQLV 307 Query: 313 TRDNFKEELE 322 T+DN + L+ Sbjct: 308 TKDNLSKFLK 317 >UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Geobacillus RepID=C6QL47_9BACI Length = 340 Score = 244 bits (624), Expect = 3e-63, Method: Composition-based stats. Identities = 52/304 (17%), Positives = 106/304 (34%), Gaps = 20/304 (6%) Query: 22 MAENLKLGFLVKQPEEPWFQTEWKFADKAGK-DLGFEVIK-IAVPDGEKTLNAIDSLAAS 79 + + +G + ++ W + K EVI A+ D K L+ +++ Sbjct: 53 KSGKIVIGAALPDFDDKWLSYLQDGMKEYEKTQKDVEVIYVDAMNDASKQLSQVENFIQQ 112 Query: 80 GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139 V+ D +V KA ++ ++ V+ F V + K G Sbjct: 113 KVDAIVLIPVDTVSAPEMVDKANQANIPIVVVNRIFDGVD----KATAYVGSESIKAGIM 168 Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199 Q +E+ K + +G + + +RT G+ +K +P+ ++ T Sbjct: 169 QMEEVAKLLNGKGKIA-----IMNGQMGHEAQIKRTEGNKQVIKK--YPDMKVVLEGTAE 221 Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259 D + L ++ +V ND +G + A E +G K D+I G++ Sbjct: 222 WDRAKGMSLMENWLQSGKKID--AVVCNNDEMAIGAIMALEDEG-KLDDVIVAGVDATPD 278 Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 E + ++ + G E+ + L+T+DN +E Sbjct: 279 ALE--YVKEGKLKVTVFQNAKGQGQLGLEVAIKAAKGEKVEK--FNWIPYELVTKDNVEE 334 Query: 320 ELEK 323 ++K Sbjct: 335 YIKK 338 >UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=C5VU40_CLOBO Length = 307 Score = 243 bits (622), Expect = 5e-63, Method: Composition-based stats. Identities = 54/308 (17%), Positives = 102/308 (33%), Gaps = 20/308 (6%) Query: 8 LAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDG 66 L +G ++ A K+G +V P+F + + A+K K+LG+E+ + + D Sbjct: 16 LLVLGFVGCSNKHTQAREKKIGMVVSTLNNPFFVSLKEGAEKKSKELGYELLVLDSQNDP 75 Query: 67 EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTV 126 K + I+ L G ++ D V A ++ VI VD Q + V Sbjct: 76 AKERSNIEDLIQGGISVLIVNPTDSDAVINSVQVANKANIPVITVDRQ-----ANGGEVV 130 Query: 127 PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAG 186 + K GE + E++ + V R R G + + Sbjct: 131 SHIASDNIKGGELASSFIIDELKNK---KDIKVVELQGIPGASATRERGKGFHNIIDKKS 187 Query: 187 FPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA 246 ++ + D +++ + + ND LG +A + K Sbjct: 188 --NLKLISSQAANFDRAQGLSVMENIIQAQSDFD--AVFAHNDEMALGAAKALKTANKK- 242 Query: 247 ADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEV 306 II +G +G + + + ++ P + G S E Sbjct: 243 --IIVVGFDGDEDAKTAI--EKSEISATVAQQPALMGSTSIETAVKISNGQNISKNI--P 296 Query: 307 TDVVLITR 314 + LIT+ Sbjct: 297 VKLRLITK 304 >UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic component n=14 Tax=Lactobacillus RepID=Q03CA2_LACC3 Length = 319 Score = 242 bits (618), Expect = 2e-62, Method: Composition-based stats. Identities = 57/342 (16%), Positives = 106/342 (30%), Gaps = 46/342 (13%) Query: 1 MHKFTKALAAIGLAAVMS----------------------QSAMAENLKLGFLVKQPEEP 38 M + K + + A + ++LK+G + P Sbjct: 1 MKQSLKRFLMVAVVATAALFTLTACGGTGLSSKSDSNTKVTKKAPKDLKVGVSLSTLSNP 60 Query: 39 WFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAI 97 +F + K V + A D K + I+ L +I D + Sbjct: 61 FFVSVRNGIQDLAKKNKTNVQVSDAQNDTAKQNSNIEDLIQKKVDVLIINPVDSSAITPA 120 Query: 98 VAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKE 157 V A + VI VD K + LV +TK G+ + + +++ K + Sbjct: 121 VKDANDAGIPVITVDRSSDGGK-----VLTLVASNSTKGGQMAAKYMIEKLGKDAKIAEL 175 Query: 158 SAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHP 217 + R R G A K + I T D ++L + Sbjct: 176 QGI-----PGASATRERGKGFDGAAKG----KLDIVSKQTAGFDRAKGLTVTENILQGNG 226 Query: 218 EVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLP 277 ++ I ND LG V+A + G K I +G +G + +A ++ Sbjct: 227 DIVG--IFSQNDEMALGAVQAVKAAGKK---ITIVGFDG--EADGIKAVKAGDMAATVAQ 279 Query: 278 SPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 P+ G + + Y+ + L+T ++ + Sbjct: 280 KPEEMGRLALQAAYDHFNGKTVKKNVES--PLSLVTTEDANK 319 >UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Proteobacteria RepID=Q98LI2_RHILO Length = 315 Score = 241 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 58/325 (17%), Positives = 111/325 (34%), Gaps = 24/325 (7%) Query: 3 KFTKALAAIGLAAVMSQSAMA-ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV--- 58 + T A + L A+M + +A + +K+GF PW + K + +V Sbjct: 9 RTTALAATLVLGAMMPGAVLAQDKIKIGFSQGTMNHPWRVAMVEGNKKYAAEHYPDVDLI 68 Query: 59 IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 + D K + ++SL A G K +I + + +V +A +KV+ +D + Sbjct: 69 VTDGNNDASKQVADVESLIAQGIKVLMISPLTEQALTPVVKEAMDAGIKVVTLDRKVNTP 128 Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 V +G G+ L K++ +G + R G Sbjct: 129 ------VTVHVGGENLPLGVGAGEFLAKKLNGKGN-----IIELQGTAGASATIDRNKGF 177 Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238 +A+ P+ ++ A M+ + + + ND LG ++ Sbjct: 178 AEAIAK--HPDMKVVASQNCDYTRDKAVKFMEDMVQRFGPGQIQAVYAHNDEMALGAIQV 235 Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 E G ++ +GI+G + E K + + + E Y + Sbjct: 236 LEAAGR-LNEVAVVGIDGQETAFEAVK--QGKLAATFVYPFV--APEGIETAYKVAKGEE 290 Query: 299 EPPKFTEVTDVVLITRDNFKEELEK 323 P T V +T DN + + K Sbjct: 291 VPETIT--LPTVSVTPDNIADMIGK 313 >UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8RBP9_THETN Length = 339 Score = 241 bits (616), Expect = 2e-62, Method: Composition-based stats. Identities = 58/308 (18%), Positives = 112/308 (36%), Gaps = 22/308 (7%) Query: 20 SAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG-FEVIKIA---VPDGEKTLNAIDS 75 ++ + + + + + A+ K+LG ++ A D + + ++ Sbjct: 43 ASSEKKYNIVLITMDSMDEHWLAVKAGAEAKAKELGNVQLTFRAPAEKADPNEQVRMMED 102 Query: 76 LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135 A +I D + +V KA + VI +D K V V K Sbjct: 103 AINQKADAILIAPTDQTALTPVVEKAFDAGIPVILIDSPVKTDK-----YVSFVATDNIK 157 Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195 E +L + + +G + T R G D LK +P+ QI Sbjct: 158 AAEMAADKLGELLGGKGKIA-----IISAQPGSGTTIMRENGFKDRLKE-KYPDIQIITT 211 Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255 D A + A +L HP++ + G N+ + +G A + + A + +G + Sbjct: 212 QYSMGDKNRALNQALDILTAHPDLAGF--YGTNEGSTIGIAMAIKQKDL-AGKVKVVGFD 268 Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315 A K S++ +P + GYK E+ + + P + T V ++T+D Sbjct: 269 ISQATINAIK--ENYIQASMVQNPYMMGYKGVEIAVDKLQGKEVPKRVD--TGVTVMTKD 324 Query: 316 NFKEELEK 323 N E +++ Sbjct: 325 NVDEVVKE 332 >UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-binding protein n=31 Tax=Vibrio RepID=A5F1B8_VIBC3 Length = 294 Score = 239 bits (611), Expect = 1e-61, Method: Composition-based stats. Identities = 59/311 (18%), Positives = 114/311 (36%), Gaps = 22/311 (7%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 M K T ++A L+ +S A A++ + ++ P+F T A+ K+LG+ +I Sbjct: 3 MKKLTTLISAALLSTSVSFVAQAQD-TVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIV 61 Query: 61 -IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 + D K L+ ++ L G K +I D S + A + V+ +D Sbjct: 62 LDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDR-----G 116 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 + V + GE G + ++ ++ + AR R G M Sbjct: 117 ASRGEVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIA-----GTSAARERGEGFM 171 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 +A+K + Q+ D + ++L +P+V+ + ND LG +RA Sbjct: 172 NAVKGSK---MQLLASQPADFDRTKGLNVMENLLAANPDVQ--AVFAQNDEMALGALRAI 226 Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 + G ++ +G +G D + ++ PD+ G E + + Sbjct: 227 QASGKS---VMIVGFDGTDDGIAA--VERGQLAATVAQQPDMIGAIGIETADKMLKGEKV 281 Query: 300 PPKFTEVTDVV 310 V+ Sbjct: 282 EAYIPVALKVI 292 >UniRef50_A9CF36 ABC transporter, substrate binding protein (Sugar) n=4 Tax=cellular organisms RepID=A9CF36_AGRT5 Length = 309 Score = 237 bits (606), Expect = 3e-61, Method: Composition-based stats. Identities = 57/325 (17%), Positives = 111/325 (34%), Gaps = 19/325 (5%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEV- 58 M KF A L + + +G + ++ + K+L G + Sbjct: 1 MKKFIIGAAMSVLLGTAAHAE-----TVGVSMALFDDNFLTVLRNGMLDYSKELKGVTLQ 55 Query: 59 IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 ++ A D K + I + AS ++ D +A+ A + ++ V+ Q VN Sbjct: 56 VEDAQNDVAKQQSQIQNFIASKVDAIIVNPVDTDATAAMSKLAADAKIPLVYVNRQPVNV 115 Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 P D V T G + +E+ + + +G AV+ + AR RT + Sbjct: 116 DSLP-DGQAFVASDETVAGTLEAKEVCRLLGGKGN-----AVIMMGELSNQAARMRTQSA 169 Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238 D LK + + T + D + L ++ ++ ND +G ++A Sbjct: 170 KDVLKTDECKGISVVEEQTANWQRTQGSDLVTNWLSS--GIEFNAVIANNDEMAIGAIQA 227 Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 + G + G++ +A ++ G + + V D Sbjct: 228 LKAAGKDMKSYVVAGVDATQDALAAMQA--GDLDVTVFQDAAGQGKGALDAALKLVKGDK 285 Query: 299 EPPKFTEVTDVVLITRDNFKEELEK 323 K L+T +N K+ + K Sbjct: 286 IEKKVY--IPFQLVTPENVKDYVAK 308 >UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Proteobacteria RepID=MOCB_RHIME Length = 309 Score = 237 bits (605), Expect = 4e-61, Method: Composition-based stats. Identities = 60/325 (18%), Positives = 111/325 (34%), Gaps = 19/325 (5%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEV- 58 M KF +AA L + + + +G + ++ + + K L G ++ Sbjct: 1 MKKFIIGIAAAVLVSTAAHAE-----TIGASMAVFDDKFGTLLRNGMEDYAKTLDGVDLQ 55 Query: 59 IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 I+ A+ D K + I + A+G ++ D + + A + ++ V+ + VN Sbjct: 56 IEDALNDVAKQQSQIQNFIAAGVDAIIVQPVDTDATTVMSKLAADAGIPLVYVNREPVNI 115 Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 P V G Q +E+ K + +G AV+ + AR RT Sbjct: 116 DTLPEKQ-AFVASNEVDSGTLQTREICKLLDGKGK-----AVVIMGELSNQAARMRTKDI 169 Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238 D L +I Q T + D + L ++ ++ ND +G ++A Sbjct: 170 HDVLATDQCKGIEIVQEQTANWQRTQGADLMTNWLSA--GIEFDAVIANNDEMAIGAIQA 227 Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 + G ++ GI+ D A S+ G S + + Sbjct: 228 LKAAGRSMDSVVIGGIDATDDALAAMAA--GELDVSVFQDAVGQGKGSIDAALKLSKGEA 285 Query: 299 EPPKFTEVTDVVLITRDNFKEELEK 323 K L+T+ N E K Sbjct: 286 VERKIY--IPFELVTKANLAEFQGK 308 >UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W799_DYAFD Length = 310 Score = 236 bits (603), Expect = 8e-61, Method: Composition-based stats. Identities = 45/303 (14%), Positives = 104/303 (34%), Gaps = 20/303 (6%) Query: 21 AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLAAS 79 + +NL +G + + + + K++G E+I A K + ++S Sbjct: 27 SGGDNLVIGATMLSMQNEFIVNVSDAMEAKAKEMGVELITVDAERSALKQVEQVESFIGQ 86 Query: 80 GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139 G ++ + + S + A + +I V+ + V T+ Sbjct: 87 GVDAIIMNPAEVEASSPAIKLAMDAKIPIINVNSE------TSAKPTAFVGSDDTESARI 140 Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199 + + +++ +G +M +R G+ D LKA P ++ + Sbjct: 141 AMKYIAEKLGGKGN-----ILMMHGFMGQAAQIKRDNGAKDILKAN--PGLKLLAEQSGE 193 Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259 D + + + + K I ND +G V+A E G K ++ + ++ + Sbjct: 194 WDRAKGMSLTENWIQSYGD-KINAIFAQNDEMGMGAVKALEAAGLK-GKVLVVSVDAI-- 249 Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 L + ++ + G K+ E K+ + + L+ + N + Sbjct: 250 PDALQAVKKGTLDATVFQNAKEQGGKAIETAVKAAKKEAFEKEV--LIPFQLVDKGNVEG 307 Query: 320 ELE 322 L+ Sbjct: 308 FLK 310 >UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n=10 Tax=Clostridium RepID=Q0SSJ2_CLOPS Length = 301 Score = 236 bits (602), Expect = 9e-61, Method: Composition-based stats. Identities = 52/314 (16%), Positives = 101/314 (32%), Gaps = 19/314 (6%) Query: 2 HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK- 60 F+ L + L K+G ++ P+F A+K + LG++++ Sbjct: 6 KIFSVGLMLMMLMTSFIGCGRDNKPKIGMVLSTLNNPFFVNMKDGAEKEAEKLGYDLVVL 65 Query: 61 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120 + D K ++ L G +I D V A ++ VI +D Q Sbjct: 66 DSQNDPAKERANVEDLIQLGVIALLINPTDSDAVVKTVEVANKSNIPVITLDRQ-----A 120 Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180 + K GE + + + + + V R R G + Sbjct: 121 NGGKITSHIASDNIKGGEMAAEYVLDKFKDE--KGPINVVEIQGIPGASATRDRGEGFHN 178 Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240 + + + D +++ +P ++ ++ ND LG V+A + Sbjct: 179 IMDKND--KFNFISIQAADFDRQKGLQVMENIIQANPNIQ--VVFAHNDEMALGAVKAIK 234 Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300 G A + IG +G D + A + PD+ G E+ + Sbjct: 235 ASGINA---LVIGFDGNDDAKD--SIDANEMTAIIAQQPDLIGALGVELANKIYKGESIK 289 Query: 301 PKFTEVTDVVLITR 314 K D+ + T+ Sbjct: 290 NKIAA--DLKVYTK 301 >UniRef50_B8D164 ABC-type sugar transport system, periplasmic component n=6 Tax=Bacteria RepID=B8D164_HALOH Length = 308 Score = 236 bits (602), Expect = 9e-61, Method: Composition-based stats. Identities = 65/299 (21%), Positives = 118/299 (39%), Gaps = 21/299 (7%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSL 76 SQ A+A+++ +G + + P++ + +KA D G E+I IA D K ++ ++ Sbjct: 21 SQFALADDITIGASLLTQQHPFYVQLKQAMEKAADDNGVELIVSIANQDLNKQISDVEDF 80 Query: 77 AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136 G V+ D K + KA+ + VI VD + ++ V Sbjct: 81 IVRGVDAIVLSPVDSKGVVGAIIKAKRAGIPVITVDI-----SAEGVEVDAHVATDNYYG 135 Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196 G G+ + K + +G V I + + R R G +A+ + +P +I + Sbjct: 136 GRIAGETMAKVLNGKGQ------VAIIDYPVVQSVRDRVAGFKEAV--SKYPGIEIVAIQ 187 Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256 P A + A ++L HPEV I G D L V A + G + D+ IG +G Sbjct: 188 PG-ITRPEALNTAQNILQAHPEVDG--IFGFGDDAALASVVAVKSAGME-DDVKVIGFDG 243 Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315 ++ K + + F + P G E + + + + L T++ Sbjct: 244 MEEARNAVKKEES-FVAVVCQYPGEMGRLGLETALRVIKGEKVEKEIPVLPG--LFTKE 299 >UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HJG2_ARTCA Length = 319 Score = 236 bits (602), Expect = 1e-60, Method: Composition-based stats. Identities = 85/335 (25%), Positives = 132/335 (39%), Gaps = 34/335 (10%) Query: 1 MHKFTKA---------LAAIGLAAVMSQ----SAMAENL-KLGFLVKQPEEPWFQTEWKF 46 M + K LAA+ LAA S +A + + K+G +V+ P+F K Sbjct: 1 MKQLVKKSAVFTAAVTLAALSLAACSSGDTQPAAKPKKIEKIGLMVQDMSNPFFSAMDKG 60 Query: 47 ADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYD 105 A +A +G + A D ID+ G VI D + +A+ Sbjct: 61 AKEAAASIGATANTQDAQLDLANQNTQIDTFIQQGVNLIVISAVDENGIQPAIERAKQAG 120 Query: 106 MKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITA 165 + VIAVD +A VM A + GE+ Q L+++M +G V+ + Sbjct: 121 IIVIAVDTPAKSADAV-------VMTDAVQAGEKSCQYLFEQMGGKGN------VLLVDG 167 Query: 166 NELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIV 225 L T R R TG + +K FP ++ ND ML P+V+ I Sbjct: 168 TPLQTIRDRITGCNNVVKK--FPGIKVVGQQASKNDRASGLAVTTDMLTATPDVQG--IF 223 Query: 226 GMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYK 285 GMND + LG V A + KA + G++G K + F G+ +P K Sbjct: 224 GMNDPSALGAVLAVQQAH-KAGTVKVTGVDGSPEAVAELKQSGSPFMGTATQNPAEMVRK 282 Query: 286 SSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320 + E+ N + P + T + L+TRD + Sbjct: 283 AVEVAQNIIDNKP-PAETTILIPSELVTRDTVSQY 316 >UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protein n=16 Tax=Streptococcaceae RepID=D2BKS5_LACLK Length = 324 Score = 235 bits (601), Expect = 1e-60, Method: Composition-based stats. Identities = 55/339 (16%), Positives = 99/339 (29%), Gaps = 43/339 (12%) Query: 2 HKFTKALAAIGLAAVMSQSA--------------------MAENLKLGFLVKQPEEPWFQ 41 K T A A + ++ + L +G + P+F Sbjct: 5 KKLTFAFVATLAVSTLTACSLYTGIPGRDGKEKVEEVTHKKPNELNIGVSISTTNNPYFV 64 Query: 42 TEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAK 100 + K+ ++ A D LN + + + +I D + Sbjct: 65 SMNNAIKSMAKEKNTKLTVSDAQNDSATQLNNVQNFISQNVDAILINPVDSDAIVPAIKA 124 Query: 101 ARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAV 160 A + VIA+D + V G+ Q + K + K + Sbjct: 125 ANNAHIPVIAMDR-----GSNGGTVLTTVASDNVAAGKMAAQAVEKLVGKNVK-----VL 174 Query: 161 MAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVK 220 R G K G I + + D + +ML H +V+ Sbjct: 175 ELSGTPGASATIDRGKGFNSEAKTLG---LNILSSQSANFDRTTGLNTTQNMLQSHKDVQ 231 Query: 221 HWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPD 280 I ND LG +A + G K I GI+G + KA ++ P Sbjct: 232 --AIFAQNDEMALGAAKAVQATGQK---IAIFGIDGESETHDAIKA--GTMTATIAQQPA 284 Query: 281 VHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 G + + Y++ + + L+ +DN + Sbjct: 285 KIGEMALQATYDYYQGKKI--AHMINSPIYLVDKDNVDQ 321 >UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clostridium botulinum C str. Eklund RepID=B1B7W7_CLOBO Length = 325 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 63/338 (18%), Positives = 122/338 (36%), Gaps = 35/338 (10%) Query: 2 HKFTKALAAIGLAAV-MSQSAMAEN----------LKLGFLVKQPEEPWFQTEWKFADKA 50 + + +G+ + + + + ++K +++T A+ A Sbjct: 4 KRLLGIILTLGMLSCVFGGCGNSADQGKGGEKGKGGNVAVVLKALNSDYWKTVQAGANDA 63 Query: 51 GKDLGFEVIK---IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMK 107 K+LG +V A D + I+ G V+ P KA + Sbjct: 64 AKELGVKVQVLGPNAETDVVGQTSLIEDQIVKGVDALVVAPLQPNAAITTFDKAEKEKIP 123 Query: 108 VIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANE 167 V+ +D V G+ G+ + K+++K + A++ Sbjct: 124 VVLIDT-----DANWDKKKSFVGTGNIAAGKLGGEYISKKLKK-----GDEAIIIRGVPG 173 Query: 168 LDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGM 227 T RT G+ AL+AAG ++ ++ +++ A ++L HP +K + Sbjct: 174 DRTQDERTQGAQKALEAAG---IKVVEIQPANSEREKAISVMENLLQTHPNIKG--VFCT 228 Query: 228 NDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSS 287 ND LG V+A + G K +II IG++G L + G G++ + G K Sbjct: 229 NDEMALGAVKALQQAGKK--NIISIGVDGS--PDALKSIKEGGLTGTVAQNSYDIGKKGV 284 Query: 288 EMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKKG 325 E + + + T L+ + N E+ K Sbjct: 285 ETAVKVLRGEKVETRID--TGTTLVDKQNVNEQEAKLN 320 >UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding protein n=4 Tax=Pseudomonas RepID=Q48J93_PSE14 Length = 308 Score = 235 bits (600), Expect = 2e-60, Method: Composition-based stats. Identities = 45/315 (14%), Positives = 104/315 (33%), Gaps = 16/315 (5%) Query: 9 AAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGE 67 I + ++S A + ++G + + ++ + ++A + ++ A D Sbjct: 6 LFIAVLLLVSSQWAAASYRIGVTIARVDDNFMTYVRSGLEEAARKENVQLQFEDAQGDVV 65 Query: 68 KTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVP 127 + +N + + ++ D + + A M ++ V+ + V Sbjct: 66 RQINQVQGFLSQKVDAVIVLPVDTSATANMTRAAVEAKMPLVYVNRHP--DERVLPKGVT 123 Query: 128 LVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGF 187 V + G+ Q + L ++M +G + + + ++ R+ G LK + Sbjct: 124 TVASNDIEAGQLQMRYLAEKMGGKG-----TIALIMGDLAQNSTHDRSEGVKQVLK--DY 176 Query: 188 PEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA 247 P I + T D ++ L+ IV ND +G A + G Sbjct: 177 PGITIVEQQTAEWQRNKGMDLTSNWLLAGRTFD--AIVANNDEMAIGAAMALQQAGKAKG 234 Query: 248 DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVT 307 ++ +GI+G+ K S+ P + + + + P Sbjct: 235 EVAIVGIDGLPDGLAAIK--RGMLAASVFQDPKAQATTALQSAIKMIKGE--PVDAEVWV 290 Query: 308 DVVLITRDNFKEELE 322 LIT + + Sbjct: 291 PFQLITPEQVAVFEQ 305 >UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C295_9CLOT Length = 330 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 51/304 (16%), Positives = 97/304 (31%), Gaps = 18/304 (5%) Query: 19 QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLA 77 S +G V + + +K ++LG +++ A D + + I++L Sbjct: 38 ASKKDGGYTIGCTVYYMT-EFVTLMTEGMEKKAEELGCDLVMLDAQQDAQNQITQIENLI 96 Query: 78 ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137 A ++ D + + ++ V+ F + V G Sbjct: 97 AQKVDVIIVAAVDSDAILPAIEMCDDAGIPLVGVNMLFNTEEPYH-----YVGPDDVLAG 151 Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT 197 E + Q E+ G V+ +R G+ + L + T Sbjct: 152 ELEMQNAIDEIGGEGN-----VVILEGPIGQSAQIQRLEGNQNILDKYEGK-INVLADQT 205 Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV 257 + A + L K IV ND LG ++A E G I+ G++ + Sbjct: 206 ANWSREEALTLVENWLETFSG-KIDAIVAHNDEMALGAIQALEAAGLT-DKIVVTGVDAI 263 Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317 K G++ + G ++ + Y+ + K D+ IT+DN Sbjct: 264 LDGCNAVK--DGTLLGTVYQDAGLEGSEAVQKAYDVLEGK-VTEKELSYIDMKWITKDNV 320 Query: 318 KEEL 321 E L Sbjct: 321 DELL 324 >UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gammaproteobacteria RepID=A8GZV8_SHEPA Length = 299 Score = 232 bits (592), Expect = 1e-59, Method: Composition-based stats. Identities = 64/314 (20%), Positives = 119/314 (37%), Gaps = 24/314 (7%) Query: 2 HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-K 60 HK + L+A L+ S SA A++ + ++ P+F T A+ +LG+++I Sbjct: 7 HKVSVLLSAALLSVSTSFSASAQDA-IAIVLSTMNNPFFVTMKDGAEAKAAELGYKLIAL 65 Query: 61 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120 + D K L ++ L G K +I D + + A ++ V+ +D Sbjct: 66 DSQNDPSKELANVEDLTMRGVKAILINPTDALAVTNAIRTANRANIPVLTLDR-----TA 120 Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180 D V + GE G+ + +++ K ++ + AR R G + Sbjct: 121 AHGDIVSHIASDNIAGGELAGEFIAQQLGKNAKVIQLEGIA-----GTSAARERGEGFSN 175 Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240 A+ A F ++ D + +ML + +V+ + ND LG +RA E Sbjct: 176 AVTANNF---ELLSSQPADFDRSKGLNVMENMLAANGDVQ--AVFAQNDEMALGALRAIE 230 Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300 G DI+ IG +G D + Q ++ P++ G + + V Sbjct: 231 AAG---KDILVIGFDGTDEGIAAVRRQQ--LSATVAQQPELLGATAIMTADRILKGQVVE 285 Query: 301 PKFTEVTDVVLITR 314 +IT+ Sbjct: 286 KSIPVAL--KIITQ 297 >UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkholderia graminis C4D1M RepID=B1G1G9_9BURK Length = 369 Score = 231 bits (591), Expect = 2e-59, Method: Composition-based stats. Identities = 64/310 (20%), Positives = 119/310 (38%), Gaps = 19/310 (6%) Query: 21 AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLAAS 79 A K+GF V +F +K K+ GF+++ A D ++ +N +L + Sbjct: 63 AAGGKTKIGFSVSTLNNAFFVGLKAGVEKGAKEQGFDLVQTNANGDAQQQVNDAINLLSQ 122 Query: 80 GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139 G V+ D K V KA ++ V +D K V +G+ Sbjct: 123 GVTALVLNPIDSKAIIPAVEKANAMNIPVFTLDRGSDGGK-----VTSFVASDNVALGQT 177 Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199 + + ++ KR K + V I A R G D + +P+ ++ + Sbjct: 178 AAKWIADQLTKRYGSAKGNVVDLIGLVGTTAATDREKGFSDEIAK--YPDIKVVARQEGA 235 Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF-----KAADIIGIGI 254 D + +A ++L ++P++ + G ND +G +A + G I+ IG Sbjct: 236 FDQEKSLNAMTNILQKYPQID--AVFGANDDNTVGAEKAIDNAGRYKPLDDKQHILVIGA 293 Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314 +G LS +A ++ +P KS + + ++ AK P + +LI + Sbjct: 294 DGT--AQALSAIRAGKQDATISQNPIQMAAKSLQFVADYTAKKDVPANYAW--PTLLIDK 349 Query: 315 DNFKEELEKK 324 N + KK Sbjct: 350 SNIDSDATKK 359 >UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AGX3_SEBTE Length = 319 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 58/337 (17%), Positives = 111/337 (32%), Gaps = 33/337 (9%) Query: 1 MHKF-------TKALAAIGLAAV------MSQSAMAENLKLGFLVKQPEEPWFQTEWKFA 47 M KF ++ +I L + + +K+G + ++ + Sbjct: 1 MKKFRNYVIMGLVSMLSIFLISCSQKGDTADGGQGGKKIKVGVSIANFDDTFLTYMMDGM 60 Query: 48 DKAGKDLG-FEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYD 105 KA + G E+ A D K +N +++ G ++ D + A Sbjct: 61 KKAAEKEGDIELEFVDAKEDIAKQMNQVENFVTQGKDVIIVVPVDTSAADPMTNAAVTNG 120 Query: 106 MKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITA 165 K++ V+ G D V K G Q + L ++M +G V+ + Sbjct: 121 TKIVYVNRNP----GNLPDGAYYVGSEEKKAGIMQMEYLAEKMGGKGN-----IVILMGK 171 Query: 166 NELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIV 225 + + +RT G + K +P+ +I T + L ++ + IV Sbjct: 172 LDNEGTIKRTEGVEEIAKK--YPDIKILDKQTGLWQRTDGMAKTENWLNKYGN-EINAIV 228 Query: 226 GMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYK 285 ND LG V+A + G I IG++ A ++ D G Sbjct: 229 SNNDDMALGAVQALKDSGKTG--IFVIGVDATPDGLAALAA--GDISATVFQDADGQGGG 284 Query: 286 SSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELE 322 + E+ + + L+T +N E + Sbjct: 285 AVEVAKKAANGETVVKE--TWVPFKLVTPENINEFKK 319 >UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Tax=Gammaproteobacteria RepID=C1DLC8_AZOVD Length = 315 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 60/320 (18%), Positives = 120/320 (37%), Gaps = 22/320 (6%) Query: 5 TKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL--GFEV-IKI 61 T+A+ + + +A+A +L+LG V Q + + + + + + G + ++ Sbjct: 13 TRAVLFATVLCLAGSTALA-DLRLGVSVGQFDN-YIAYLVRAMQERARQVPGGVTLQVED 70 Query: 62 AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121 + D + L ++S A ++ D I +A + ++ ++ + + Sbjct: 71 SGSDVVRQLGQVESFIAQQVDAIIVNPADTAATGGITERATRAGIPLVYLNSRPEVRE-- 128 Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181 V V ++G+ Q + L ++M +G + + D R+RT G D Sbjct: 129 FPAGVVFVGTDERRLGQMQMEYLAEKMGGKGDLA-----ILLGRLAHDDTRKRTAGVKDV 183 Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241 L A +P+ ++ + + D N+ L E +V ND +G A Sbjct: 184 L--ARYPQIRVVEEQSGDWQRDKGLDLTNNWLSSGREFD--AVVANNDEMGIGAAMALRQ 239 Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301 G + ++ GI+G +LL P G ++ ++ V KDV Sbjct: 240 AGRR--EVSVGGIDGTPDGLAAIA--RGQLAVTLLRDPVAMGEEAVDVALRLVRKDVVQG 295 Query: 302 KFTEVTDVVLITRDNFKEEL 321 V LIT DN + Sbjct: 296 DVW--IPVHLITPDNHTQFQ 313 >UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotrichia hofstadii F0254 RepID=C9MXF0_9FUSO Length = 328 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 58/333 (17%), Positives = 118/333 (35%), Gaps = 34/333 (10%) Query: 1 MHKFTKALAAIGL------------AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFAD 48 M K L A + + +K+ + K + ++++ A Sbjct: 1 MKKLLLFLVVFAAVLSCGKSEDKKDAGAGKSANSGDKIKIELVSKGYQHEFWRSVEAGAK 60 Query: 49 KAGKDLGFEVIKIAVPD---GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYD 105 KAG++LG EV I K + +++ I DP + + KA Sbjct: 61 KAGEELGVEVNFIGPEKETEIGKQVGMVENAINKKVSALGIAALDPDALAVVAKKAMDAK 120 Query: 106 MKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITA 165 + V+ D T + G G++L K + +G + Sbjct: 121 IPVVTFDSNVKGD-----ITSSFIATDNKVAGAMAGEQLAKLINGKGKVA-----IVSHN 170 Query: 166 NELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIV 225 TA R G +AL +P+ +I D A ++ +P++ I Sbjct: 171 PGTTTAIEREAGFREALAK--YPDIKILNTQFSDGDKSKALAITLDIINANPDIAG--IY 226 Query: 226 GMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYK 285 G N+ ++ G + E +G ++ +GI+ + +++ + G ++ P GY+ Sbjct: 227 GTNEPSIFGIAKGVEEKGLT-GKVVLVGIDSSEDLAKF--LEKGVISGLVIQDPYNMGYQ 283 Query: 286 SSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318 + + LY + + T +L+T++N Sbjct: 284 TVQQLYKLSKGEKVEKRID--TGAILVTKENIN 314 >UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional regulator n=23 Tax=Bacteria RepID=C6B4I0_RHILS Length = 313 Score = 231 bits (590), Expect = 2e-59, Method: Composition-based stats. Identities = 57/291 (19%), Positives = 115/291 (39%), Gaps = 18/291 (6%) Query: 28 LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPD-GEKTLNAIDSLAASGAKGFVI 86 + + + P+F+ E A+ K+LG+E + + D K ID+ GAK ++ Sbjct: 30 IAIITPAHDNPFFKAEAVGAEAKAKELGYETLLMTHDDDANKQSEMIDTAIGRGAKAIIL 89 Query: 87 CTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYK 146 A V KA+ + +D + V ++ + + QE K Sbjct: 90 DNAGADASVAAVKKAKDAGIPSFLIDREINATG----VAVAQIVSNNYQGAQLGAQEFVK 145 Query: 147 EMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAF 206 M ++G V + A R+ G D + +P+ + + + A+ Sbjct: 146 LMGEKGNY-----VELVGKESDTNAGIRSQGYHDVID--DYPDLKSVAKQSANWSQTEAY 198 Query: 207 DAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKA 266 ++L +P++K ++ ND+ +G + A + G K D+I +G +G + V + Sbjct: 199 SKMETILQANPDIKG--VISGNDTMAMGAIAALQAAGRK--DVIVVGFDGSNDVRD--SI 252 Query: 267 QATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317 ++ G ++L + E ++ P + ++ D VLI DN Sbjct: 253 KSGGIKATVLQPAYAQAQLAVEQADAYIKNKTTPKEEKQLMDCVLINADNA 303 >UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P8T4_9FIRM Length = 333 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 55/346 (15%), Positives = 109/346 (31%), Gaps = 48/346 (13%) Query: 1 MHK---FTKALAAIGLAA----VMSQSAMAEN---------------------LKLGFLV 32 M K AL A+G+ A S A + + +GF Sbjct: 7 MKKANMLLAALCAVGMTASLFGCSSGQAQGGDTQPQASAAPAADAASAPQREQIVVGFSN 66 Query: 33 KQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDP 91 ++ K + G ++I D ++ G G V+C D Sbjct: 67 WSRSFEFYVDLEKGMQEVADAQGVKLITQDPNGDLAAQTKQVEDFITQGVDGIVLCPIDS 126 Query: 92 KLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKR 151 + ++ D + T G+ Q + +++ Sbjct: 127 NAAVTEAETINQAGIPLVTTDIAVAGGD-----VASHIASDNTLGGQLAAQFIGEQLGGT 181 Query: 152 GWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANS 211 G V I + + R TG D + +P+ +I V + + + Sbjct: 182 GK------VALINNPTITSLIERETGFTDTMAQ-KYPDIEIVAVQSGESKREKGLSVMEN 234 Query: 212 MLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGF 271 +L +P+V+ + +ND LG ++A + DI+ +G + + + K + + Sbjct: 235 ILQSNPDVQG--VFAVNDMMGLGALQAVQAAQR--DDIVIVGFDATEEAVKYIK-EGSAL 289 Query: 272 YGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317 S+ +P G + E + +A + V L+T N Sbjct: 290 KASVAQNPVELGKTTMETMLKVIAGEQVEKNI--PVPVELVTAGNA 333 >UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=B2IJW8_BEII9 Length = 314 Score = 231 bits (589), Expect = 3e-59, Method: Composition-based stats. Identities = 50/322 (15%), Positives = 102/322 (31%), Gaps = 14/322 (4%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEVI 59 M + A + + + +G + ++ + G+ L V Sbjct: 1 MKRILLAAVMAINFSCSAGAES-----IGVSMSAFDDNFLTVLRNALIAHGQSLPNVNVQ 55 Query: 60 K-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 A D + + + + ASG ++ D AI A + ++ V+ Q N Sbjct: 56 MEDAQNDVARQQSQVQNFIASGVSAIIVNPVDTDATEAISKLAADAKVPLVYVNRQPANV 115 Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 P + G Q QE+ + ++ RG + V+ + +R+RT Sbjct: 116 DRLPETQ-AFIASDEAVSGTLQAQEVCRLLKARGKGKSANVVVMMGQLSNQASRQRTKDV 174 Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238 D + ++ + T + A + ++ L ++ ++ D +G ++A Sbjct: 175 HDVIATPECAFMKVVEEQTANWQRTEAMNLMSNWLSA--GIQFDAVIANADEMAIGAIQA 232 Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 G D I GI+G EL + ++ G + + Sbjct: 233 MRSAGLPVKDYIVAGIDGGRDGIELMR--QGYLDVTVFQDAAGQGAGALDTALMLARGKK 290 Query: 299 EPPKFTEVTDVVLITRDNFKEE 320 T LIT N + Sbjct: 291 T--DRTIWVPFQLITPTNVADF 310 >UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport protein n=1 Tax=Rhodopirellula baltica RepID=Q7UNV9_RHOBA Length = 438 Score = 229 bits (585), Expect = 1e-58, Method: Composition-based stats. Identities = 51/332 (15%), Positives = 117/332 (35%), Gaps = 29/332 (8%) Query: 2 HKFTKALAAIGLAAVM--------SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKD 53 + ++ L S + + L + K ++Q+ A++AG++ Sbjct: 110 RRSFCLVSVATLLVCAGCQPPADTSANTGEKELHFAVIPKGTTHIFWQSVKHGAEQAGEE 169 Query: 54 LGFEVIKIA---VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIA 110 +G ++ D ++ +N + + G ++ D V +A + V+ Sbjct: 170 IGAKITFRGPSKENDRDEQINVVQGFLNARVDGILLAPLDADALVRPVKEASRAGVPVVI 229 Query: 111 VDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDT 170 D G D V V + G+ G+ + + ++G D ++ ++ Sbjct: 230 FDSGLNTDPG---DFVSYVATDNFEGGKLAGEAMANALGEKGGD----VILLRYEQGSES 282 Query: 171 ARRRTTGSMDALKAAGFPEKQIY-QVPTKSNDIPGAFDAANSMLVQHPE-VKHWLIVGMN 228 +R G + ++ A + ++ A D A ++L + + V Sbjct: 283 THQREEGFLYSI--AEYSNIRVLSSDQYAGTTTESAIDKAQALLNRFGDEADGICTVC-- 338 Query: 229 DSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSE 288 + T G +RA + A + + + D++ E A +L P GY++ + Sbjct: 339 EPTAEGALRALRERKL-AGKVKLVTFDSSDSLRESLSA--GEVNAIVLQDPVAMGYQAVK 395 Query: 289 MLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320 + + + P+ T V + T N +E Sbjct: 396 TMAAHLRGET--PEQFIDTGVFVATAKNQDDE 425 >UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Alphaproteobacteria RepID=Q28MQ8_JANSC Length = 343 Score = 228 bits (583), Expect = 2e-58, Method: Composition-based stats. Identities = 53/302 (17%), Positives = 109/302 (36%), Gaps = 20/302 (6%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG-FEVI---KIAVPDGEKTLNAI 73 +A + +G ++K +FQ A+ ++ G +E++ D E +NA+ Sbjct: 56 GMAAAQDQPTVGLIMKSLANEFFQNMMVGAEAHAEERGDYELLAVGMQNETDFESQINAV 115 Query: 74 DSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDT-VPLVMMA 132 ++ G V+ D + + +A + VI D + + V Sbjct: 116 ENFITQGVDAIVVAPADSRAMVRPLRRAMEAGITVINFDVALDTGAMEQQGIELAFVGPD 175 Query: 133 ATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQI 192 E G L + + + G V+ D A +R G DA+ G ++ Sbjct: 176 NRMGAEMAGNALGEALGEGG-----RVVIIEGNPGADNATQRRLGFEDAIATHG---LEL 227 Query: 193 YQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGI 252 + T + A +ML HP+++ ++ NDS +G + A + G DI+ + Sbjct: 228 LESRTAHWETEEANQVFAAMLTAHPDLQG--VMAANDSMAIGVIEALDAAGR--DDILVV 283 Query: 253 GINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLI 312 G + V AV + + ++ + ++ + + T + L+ Sbjct: 284 GFDAVPAVLPMI--EDGRMLATVDQFGQAMAANAIDLALEVLETG-VDLEGWVRTPIELV 340 Query: 313 TR 314 T Sbjct: 341 TA 342 >UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RW63_9CLOT Length = 375 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 52/301 (17%), Positives = 109/301 (36%), Gaps = 17/301 (5%) Query: 24 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAK 82 + +G+ + E + GF++I A + K ++ ++ L A Sbjct: 87 SDYLIGYSQLANTGTYRIAETNSMKDEAEKRGFKLIVTDAQDNTAKQVSDVEDLIAQNID 146 Query: 83 GFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQ 142 ++ + + + A+ + VI VD G +D V + G+ G+ Sbjct: 147 LLILSPREFEGLETALQTAKENSVPVILVDRLAKGEAG--VDYVTYIATDFVWEGQAAGE 204 Query: 143 ELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDI 202 L + + + +A+ R TG + +I T + + Sbjct: 205 WLKDKTGG-----TCNIIELTGTVGSSSAQDRATGFAGVVDQNE--GMKIIASQTGNFER 257 Query: 203 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA-ADIIGIGINGVDAVS 261 ++L H + + ND LG V+A + G+K DI+ IGI+G + Sbjct: 258 SEGQKVMENLLQAHGG-EVDAVFCHNDQMALGAVQAIKAAGYKPNEDILVIGIDG--EMD 314 Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEEL 321 A +++ SP ++G + + + +A P + + V++ N +E + Sbjct: 315 SFKSVIAGEMSATVVSSP-MYGPITFDTVEKILAGQEVPE--QTIMEGVVVDAGNAQENM 371 Query: 322 E 322 E Sbjct: 372 E 372 >UniRef50_B3T6P5 Putative periplasmic binding protein and sugar binding domain of the LacI family protein n=1 Tax=uncultured marine microorganism HF4000_APKG2K17 RepID=B3T6P5_9ZZZZ Length = 302 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 52/321 (16%), Positives = 107/321 (33%), Gaps = 24/321 (7%) Query: 3 KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA 62 K K A LA ++ A A+ + L P++ + + A + +LG +++ ++ Sbjct: 2 KLVKLFLASSLAIIIGTLAFADTVLLSMKGPGAGNPFWASVERGAREKAAELGVKIVVLS 61 Query: 63 ---VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 D + +N ++ G I DP + ++ AR + V+ +D + +N Sbjct: 62 PPQESDVQSQINQVEDQITKGVTAIAIAVTDPNALAKVIESARSAGIPVVFIDTKGIN-- 119 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 V + + + + + ++ T + R G+ Sbjct: 120 ----KGVTFIGTDNKAGAKMAADFICDRVSRGSDVAILQGII-----TQSTGKARADGAH 170 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 LK G I + D ++L ++ ++K + ND+ LG V A Sbjct: 171 AGLKGCG---LNIVAEQPANWDRAQGRTVMENILTRNQKLK--AVFASNDNMALGAVEAL 225 Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 + D+I +G + A ++ G E Sbjct: 226 KDADM-LNDVIVVGFDAN--PDAAKSILAGEMTATIAQFSYNMGAYGVEKALELAKGRSL 282 Query: 300 PPKFTEVTDVVLITRDNFKEE 320 PP T +L+T+ N + Sbjct: 283 PPVVD--TGTLLVTKKNAADF 301 >UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=bacterium Ellin514 RepID=B9XK02_9BACT Length = 330 Score = 228 bits (582), Expect = 2e-58, Method: Composition-based stats. Identities = 52/330 (15%), Positives = 116/330 (35%), Gaps = 25/330 (7%) Query: 6 KALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL---GFEVIKI- 61 A+ L+++ A ++ + + K ++Q A KA ++L G +V I Sbjct: 8 LLTCALFLSSICLSCAADKSYTIAVIPKGTTHEYWQCIHAGAIKAQRELQEKGIKVDLIW 67 Query: 62 ----AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117 D ++ + +++ G V+ D + A V A + V+ D Sbjct: 68 KGPLREDDRDQQIQVVENFMTRRVSGMVLAPLDNQAMVAPVNNAIRAKIPVVIFDSALKT 127 Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177 K V V K G+ + + + ++ +G ++ A + R G Sbjct: 128 DK-----YVSFVATDNYKGGQLAAERMGQLLEGKGN-----VILLRYAVGSASTEEREAG 177 Query: 178 SMDALKAAGFPEKQIY-QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 236 MD LK + FP ++ A+ A+ ++L + + I + + Sbjct: 178 FMDTLK-SKFPNIKVISSDQHAGATRETAYQASQNLLNRFGH-EVNGIFCPCEPPTVAMA 235 Query: 237 RATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296 +A G + +G + + + G ++ +P GY + + Sbjct: 236 KALRDIGKAGGKVKMVGFDA--GSQSVIDLKNGDVQGLVVQNPLRMGYLGVITMVQHLQG 293 Query: 297 DVEPPKFTEVTDVVLITRDNFKEELEKKGL 326 + + T V ++T +N ++ K+ + Sbjct: 294 EKVEKRID--TGVQIVTPENMEQAGIKELI 321 >UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional regulator n=19 Tax=Enterobacteriaceae RepID=A8GD74_SERP5 Length = 309 Score = 228 bits (581), Expect = 3e-58, Method: Composition-based stats. Identities = 53/326 (16%), Positives = 114/326 (34%), Gaps = 23/326 (7%) Query: 1 MHKFTKALAAIGLAAVMSQSAM-AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-- 57 M K L + M +++ A+++K+G + ++ + + K G Sbjct: 1 MK--LKKLIVTSVLMCMLPASVLAKDIKIGVSMAYFDDNFLTILRQSMQSKMKQDGNVSG 58 Query: 58 VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117 + A D + + I++ + G ++ D + ++ A + ++ V+ + Sbjct: 59 QFEDAKGDIAQQIQQIENFVSQGVDAIILNPVDTQGVKPMIKLAESAKIPLVFVNRRP-- 116 Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177 + + V + G+ Q +EL K M +G ++ + + R RT G Sbjct: 117 -EVTLPAGMAYVGSDSKLAGKLQMEELAKLMNGKGN-----VMILMGELSNEATRDRTRG 170 Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237 + AA +P +I T A D + ++ I ND +G + Sbjct: 171 VEEV--AAKYPGIKILDKQTAKWGRKEAVDITTDWALTGQQID--AIASNNDEMAIGAIL 226 Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 A + ++ G++G E K S+ G + + V + Sbjct: 227 ALKQAKKSG--VLVAGVDGTPDALEYIK--KGDLALSVFQDAKGQGEGAVQTAIQLVKGE 282 Query: 298 VEPPKFTEVTDVVLITRDNFKEELEK 323 + LIT+ N++E +K Sbjct: 283 KVESNV--LIPYQLITKANYQEFADK 306 >UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 Tax=Proteobacteria RepID=A4TQ38_YERPP Length = 313 Score = 227 bits (580), Expect = 3e-58, Method: Composition-based stats. Identities = 51/320 (15%), Positives = 112/320 (35%), Gaps = 18/320 (5%) Query: 1 MH-KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI 59 M K+ L ++ + A N + + + P+F+ E + A +LG+ + Sbjct: 1 MKNTLLKSCLTAALISMAGVAGAASNGLIAIITPSHDNPFFKAEAEGAKAKATELGYTTL 60 Query: 60 KIAVPD-GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 + D K I++ A AK ++ + KA+ + +D + Sbjct: 61 VASHDDDVNKQNQLIETAIARKAKAIILDNAGSDATIGPLKKAKAAGIPAFLIDREINET 120 Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 V ++ + + ++ M +G + + A R+ G Sbjct: 121 G----IAVSQIVSNNYQGAQLGAEKFVTLMGGKGKY-----IELLGRESDTNAHVRSQGY 171 Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238 D + + ++ T + AF+ S+L +P++ ++ ND+ LG A Sbjct: 172 HDVIDE--HSDMKMVAQQTANWSQTEAFNRMESILQANPDITG--VISGNDTMALGAEAA 227 Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 + G D++ +G +G D V + ++L + ++ Sbjct: 228 LKAAGRN--DVVVVGFDGSDYVRDSI-INNGNIKATVLQPGWAQAQMAVVQADQYLKTGK 284 Query: 299 EPPKFTEVTDVVLITRDNFK 318 + ++ D VLI +N K Sbjct: 285 TGLEEKQLMDCVLIDENNAK 304 >UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_9BACE Length = 960 Score = 226 bits (578), Expect = 6e-58, Method: Composition-based stats. Identities = 60/320 (18%), Positives = 114/320 (35%), Gaps = 26/320 (8%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFA-DKAGKDLGFEV- 58 M T +GLAA A ++G ++ W +A G V Sbjct: 8 MKWITVLFCLLGLAACRQD---APRFRIGVAQCS-DDSWRHKMNDEILREAMFYDGVSVE 63 Query: 59 IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 I+ A D K + G +I + + IV +A + VI VD + ++ Sbjct: 64 IRSAADDNRKQAEDVHYFIDKGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKILSD 123 Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 K + +IG G + ++ +G V A R G Sbjct: 124 K-----YTAYIGADNYEIGRAVGNYIASSLKGKGN-----VVELTGLGGSTPAMERHQGF 173 Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238 M A+ + +P+ ++ + + A +SML +HP++ + ND G +A Sbjct: 174 MAAI--SNYPDIKLIDKADAAWEREPAEVEMDSMLRRHPKID--AVYAHNDRIAPGAYQA 229 Query: 239 TEGQGFKAADIIGIGINGVDA-VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 + G + ++I +GI+ + + L + + + G K ++ N + K Sbjct: 230 AKKAGRE-KEMIFVGIDALPGKGNGLELVLDNVLDATFIYPTN--GDKVMQLAMNILEKK 286 Query: 298 VEPPKFTEVTDVVLITRDNF 317 P + V + ++ R N Sbjct: 287 SYPRE--TVMNTAVVDRTNA 304 >UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridium RepID=B8I2K0_CLOCE Length = 333 Score = 226 bits (578), Expect = 7e-58, Method: Composition-based stats. Identities = 57/349 (16%), Positives = 117/349 (33%), Gaps = 47/349 (13%) Query: 1 MHKFTKALAAIGLAAVMSQSA-------------------------MAENLKLGFLVKQP 35 M + L A + + + + + +G + Sbjct: 4 MKRLVAMLVAAIMLITFAACSSDTSKNSSEESKSSDTTKVTETSKPADKKIVVGMTLYSL 63 Query: 36 EEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLG 94 + + A K +LG E+ I D +N ++++ + G ++ D K Sbjct: 64 KNEFTVRLSNAAKKKAAELGVELKIYDGNYDPNTQINQVETMISDGVDAIILNPQDAKAC 123 Query: 95 SAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWD 154 + V KA ++ VI V+ + + K V GE + Q + ++ +G Sbjct: 124 AVAVDKAAAANIPVIGVNTRVDSEK-----LTSYVGSKDVYAGELEMQAIADKIGGKGN- 177 Query: 155 VKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLV 214 V+ R+ G + LK +P+ ++ T + A + L Sbjct: 178 ----IVILDGPLGQSAQLERSEGIQNVLKK--YPDIKVLAEKTANWSRSEAMTVMENWLQ 231 Query: 215 QHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGS 274 ++ +V ND LG +A E K DI IG++G+ + + + Sbjct: 232 AFDKID--AVVAENDEMALGARKAIEA---KKLDIPTIGVDGITDALDA--VEKGTLIAT 284 Query: 275 LLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEK 323 + G K+ E+ + ++ D +T+DN E ++ Sbjct: 285 IFQDGAGQGSKALEIAVAKAKGENVDKEYW--IDFEPVTKDNVAEFKQR 331 >UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2S5J9_9ACTO Length = 335 Score = 226 bits (577), Expect = 7e-58, Method: Composition-based stats. Identities = 63/341 (18%), Positives = 118/341 (34%), Gaps = 35/341 (10%) Query: 5 TKALAAIGLAAVMSQSAMAEN---------------LKLGFLVKQPEEPWFQTEWKFADK 49 A + LA S + A + LK+G+ V + P++Q+ Sbjct: 4 LSAACVLALAGCASGAEQAGDVAADGGETTFEAKDPLKIGYSVYDLQNPYWQSYAAGVRA 63 Query: 50 AGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKV 108 ++ G EV+ ++ ++ L G +I P + + A G + V Sbjct: 64 GAEEAGIEVVIADQKSSQQEQVSGSLDLINQGISALIITPVQPSALPSTIDAAHGEKIPV 123 Query: 109 IAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANEL 168 + D G D ++ + G + + +++ G + Sbjct: 124 VVADI------GTEGDYDGYILSNNYEGGRLAAEHVVEKLG--GTPGPHQVGVIELHAGS 175 Query: 169 DTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMN 228 R +G +D L +I ++ + G F AA ML +PE+ +I N Sbjct: 176 VVGEERVSGFVDRLGEEE--NFEIVSSLDGNDTVDGGFTAAQDMLSANPELD--VIYAAN 231 Query: 229 DSTVLGGVRATEGQGFKAAD-IIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSS 287 D + +G RA E G A+ IG +G D +L + G++ P G K+ Sbjct: 232 DDSAVGASRAMETAGVSVANGFTLIGFDGSDPALDLI--EQGVMSGTVAQDPFGQGQKAV 289 Query: 288 EMLYNWVAKDV----EPPKFTEVTDVVLITRDNFKEELEKK 324 E + + + T V ++T +N E + Sbjct: 290 ETALALLNGEDPGYSDEATKTIYFPVEMVTAENVAEFRASR 330 >UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F8A2_SACEN Length = 334 Score = 225 bits (575), Expect = 1e-57, Method: Composition-based stats. Identities = 59/352 (16%), Positives = 116/352 (32%), Gaps = 43/352 (12%) Query: 1 MHKFTKALAAIGLA-------AVMSQS----------------AMAENLKLGFLVKQPEE 37 M K T++L A+ A + S +G E Sbjct: 1 MRKTTRSLFAMTCAAVAIAAAGCGTTSENTGQVQQQDPTKACKGPDSKYTIGMSQANLAE 60 Query: 38 PWFQTEWKFADKAGKDL-GFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGS 95 P+ + KA + + F+V A D K ++ +++ +I + + Sbjct: 61 PYRVRMDEDIRKAAEKVPQFDVQFADAAKDNSKQVSDVENFMTKKVDLLMISPNEAAPLT 120 Query: 96 AIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDV 155 +V KA + V+ +D + + +IG + G+ + +G Sbjct: 121 DVVKKAYNEGIPVVVLDRKVEGE-----AFTTYIGADNVQIGRQAGEYFKNTLLPQGGK- 174 Query: 156 KESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQ 215 V + A R G M+ + + ++ + +++L Sbjct: 175 ---IVQLKGLSGSTPAAEREKGFMEGIAGSK---IEVVDTADGEWERSVGQQKMDALLKA 228 Query: 216 HPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSL 275 HP+++ + ND G A + G K D+ +GI+G+ S KA G + Sbjct: 229 HPDIQ--AVYAQNDPMAEGAWLAAQAAGRK--DLKFVGIDGLPIESGGIKAVEQGRLSAT 284 Query: 276 LPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKKGLG 327 P G ++ E + PK + L+TR+N + + G Sbjct: 285 NLYPTG-GEEAVEAARKLLIDCQPVPKEQTL-PTELVTRENAAQVYTRLNQG 334 >UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostridium acetobutylicum RepID=Q97JD5_CLOAB Length = 319 Score = 225 bits (574), Expect = 2e-57, Method: Composition-based stats. Identities = 52/334 (15%), Positives = 109/334 (32%), Gaps = 28/334 (8%) Query: 1 MHKF-----TKALAAIGLAAVMSQSA---MAENLKLGFLVKQPEEPWFQTEWKFADKAGK 52 M K A L A + + ++ ++G + ++ + + K Sbjct: 1 MKKTSRILIIFAATCFLLTACAQKKSIVYKSKKYRIGLSIPASDDVFRNKIINAMENEAK 60 Query: 53 DLGFE--VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIA 110 +L V+ A D + + I +L A ++ D L S A + +I+ Sbjct: 61 NLPDTDLVVVNAKGDPARQKSQISNLVAQKCNAILVLPVDTLLSSDYTQIANDSGIPIIS 120 Query: 111 VDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDT 170 V++ N D V + G + + K++ +G V+ +T Sbjct: 121 VNNFLKNQD----DAAAYVGSDSITSGIMEAEYAVKQLNGKGN-----VVILKGEPNHET 171 Query: 171 ARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDS 230 A +RT G L+ +PE +I + + K I+ ND Sbjct: 172 AIKRTEGFKQVLQ--NYPEIKIIDEQYGDWKRTLGMQITENWIK--NGTKFDAILANNDE 227 Query: 231 TVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEML 290 +G + A + ++ GI+ L + ++ + G ++ + Sbjct: 228 MAIGAIMALKENNL-INNVFVGGIDAT--PDALKLLKEGSLKVTVFQNAAGQGSEAIKAA 284 Query: 291 YNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKK 324 Y V + K L+ ++ + L K+ Sbjct: 285 YKLVKGEKINKKI--FVPYELVVPNDADKYLGKQ 316 >UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=5 Tax=Bacteria RepID=C1XFK3_MEIRU Length = 330 Score = 225 bits (573), Expect = 3e-57, Method: Composition-based stats. Identities = 51/331 (15%), Positives = 111/331 (33%), Gaps = 22/331 (6%) Query: 4 FTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA- 62 L+ + A+ + + + + + ++ T K A++A K LG E+I Sbjct: 10 TVLTLSLLIAVAMYGLAQQQKKYTIALIPGLTTDGFYITMHKGAEEAAKRLGVELIFQGG 69 Query: 63 -VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV----- 116 + ++++ A +I D A + +A +K+I VD Sbjct: 70 PEFSPTTQIPVLNAIIARKPDAILIAPTDRNQLIAPLKRAHEAGIKIITVDTFIGENGQY 129 Query: 117 -NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRT 175 KG + V + G + L K + ++G + + T +R Sbjct: 130 QTGKGNADFPLAYVASDNVEGGRIAARALAKAIGEKGKVYVSNV-----KPGISTTDQRE 184 Query: 176 TGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG 235 G + +K +P + ND A + L ++P++ + G N + +G Sbjct: 185 QGFKEEMKK--YPGITVLATQYNDNDANKAASQLAAALARNPDLAG--VFGANLFSAIGA 240 Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295 + G K + + +++ + ++ P G + E + Sbjct: 241 ANGVKNAG-KRGAVKVAAFDCPESIIN--DIKGGTIDMAVCQHPAEMGRIAVEWAVKALN 297 Query: 296 KDVEPPKFTEVTDVVLITRDNFKEELEKKGL 326 + P ++ T +I R N K + Sbjct: 298 GEKIPNRY--GTGYTVIDRANVDSAEAKAAI 326 >UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1ASV8_RUBXD Length = 338 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 48/315 (15%), Positives = 99/315 (31%), Gaps = 18/315 (5%) Query: 6 KALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP- 64 + E +L +V + ++ T A A + LG + Sbjct: 27 AVFLGGLTTSCGGGGGEGEGYRLALIVGVTGDEFYTTMECGARAAARKLGARLNVQGPEE 86 Query: 65 -DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPM 123 ++++ S +I D + A D+ V+ VD + Sbjct: 87 FSPAAQTPILNAVVQSNPDAILIAPTDRTAMVGPIQSAVNQDIPVVLVDTTIEKEE---- 142 Query: 124 DTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALK 183 + + + G G+ L +++ +G ++ + T +R G +A+K Sbjct: 143 IALARISSDNVEGGRMAGEALAEQIGGKGK-----VLLISVKPGISTTDQRKQGFEEAIK 197 Query: 184 AAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQG 243 +P+ + ++D A S L HP++ I G N + G G Sbjct: 198 Q--YPDIEYLGTEYCNDDPTQAASITTSTLQAHPDLAG--IFGANVFSGQGAGTGVRQAG 253 Query: 244 FKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKF 303 K + + + E + + P+ G + ++ ++ EP Sbjct: 254 -KRDQVSVVAFDASPTQVE--DLRRGNLDVLIAQHPNDIGRRGVQIAVRYLESGEEPENK 310 Query: 304 TEVTDVVLITRDNFK 318 T +TRDN Sbjct: 311 QITTGFTTVTRDNLD 325 >UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RPX4_9CLOT Length = 362 Score = 224 bits (572), Expect = 3e-57, Method: Composition-based stats. Identities = 46/311 (14%), Positives = 102/311 (32%), Gaps = 20/311 (6%) Query: 14 AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP---DGEKTL 70 ++ + S + +GF+ + T A + G ++ A + L Sbjct: 60 SSAEAASGNYGDKTIGFVGMTLNNEYHITLANGAKVEAEAKGVKIEVQAGDQHASADAQL 119 Query: 71 NAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK-GKPMDTVPLV 129 I+++ A+ G ++ + + K + + +I +D + + +P Sbjct: 120 GIIENMIANKVDGILLVPSSSDGLESALTKCKEAGIPIINLDTKLTDESLANVGLDIPFY 179 Query: 130 MMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPE 189 + + G+ + K +K + A R G ++ Sbjct: 180 GTNNYEGAKLAGEYVAKNFEKGTKTAILKGI-----EGQTNAADRYNGFIEG----AGDT 230 Query: 190 KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADI 249 + T + ++ + AA +++ +P+V L ND+ +G +RA + I Sbjct: 231 VTVVAEQTANWEVDQGYTAAQNIISANPDV--ELFFCCNDNMGIGALRAIKEANM-QEQI 287 Query: 250 IGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDV 309 IG + V L + F ++ P G + + T Sbjct: 288 QIIGFDAVSEALNL--VENGEFLATVAQYPAEMGKLGVDNMLKIFDGGEAES--YIDTGT 343 Query: 310 VLITRDNFKEE 320 +IT+DN E Sbjct: 344 EVITKDNVGEF 354 >UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4DBL5_9BACT Length = 328 Score = 224 bits (571), Expect = 4e-57, Method: Composition-based stats. Identities = 49/315 (15%), Positives = 104/315 (33%), Gaps = 19/315 (6%) Query: 10 AIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP-DGEK 68 A + A +G + + P+F+ GK G++ + ++ D K Sbjct: 25 ASTSTDTQPPTGSASKGTIGVSLLTLDNPFFKVIGDNIVSEGKKRGYDAVVVSGDKDVAK 84 Query: 69 TLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPL 128 N I V+ D K ++ +A + V VD + Sbjct: 85 QSNQIKDFIVKKVSAIVLSPCDSKSIVPVIQEANAAGIPVFTVDIPCHEP---GVKIATQ 141 Query: 129 VMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALK---AA 185 + G+ + + + + + G + + + ++ + R G + + A Sbjct: 142 IATDNYGGGKEAAKAMIEALGEAGGK-----IAILHFKQAESCQLRVKGFREIIDAHNAE 196 Query: 186 GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK 245 G + I + AA L +P++ I +ND LG A E G K Sbjct: 197 GKSKVDIVAELESGGAKDQGYKAAEDTLQANPDLHG--IFAINDPAALGARAALEKAG-K 253 Query: 246 AADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTE 305 ++ +G +G + K Y + PD G + + + + PP+ Sbjct: 254 TDQVVIVGFDGQPEGKQAIK--EGKIYADPIQFPDKMGAQIVDAIIQQSKGETLPPQM-- 309 Query: 306 VTDVVLITRDNFKEE 320 + L + + +++ Sbjct: 310 LIPTSLYKKADAEKD 324 >UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZT83_9FIRM Length = 324 Score = 224 bits (571), Expect = 5e-57, Method: Composition-based stats. Identities = 65/328 (19%), Positives = 110/328 (33%), Gaps = 23/328 (7%) Query: 4 FTKALAAIGLAA---VMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEVI 59 T A+ LAA +S + + +G EPW A + FEVI Sbjct: 10 LTAAMGVSVLAAGTVTVSAAEKKDKYVIGMSQCNLGEPWRVAMNDQIAMAAEKHPEFEVI 69 Query: 60 K-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 A D K + I++ G + + + V+ A + VI +D + Sbjct: 70 FADAAQDNSKQIADIENFVQMGVDLIITSPNEATPLTNAVSAAYDAGIPVILLDRKIDGD 129 Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 K + +G G+ + + G V E R G Sbjct: 130 K-----YTQFIGADNVDMGRIAGEYIADTLLPDGGKVCE----IKGLEGTSGGIDRDNGF 180 Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238 + +K + +I V A A ML + E+ +L +ND G A Sbjct: 181 REGIKKND--KIEIVAVNNADWLREKAITVAEEMLQTNDEIDLFL--ALNDPMAEGAYIA 236 Query: 239 TEGQGFKAADIIGIGINGVDAVSELSK-AQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 + G + DI+ +G +G+ + + G ++ E Y + + Sbjct: 237 AKNAGRE-GDILFVGFDGLPTPDGGIRSVMDGRLSMT--QVYPTGGTEAIESAYQLLVEG 293 Query: 298 VEPPKFTEVTDVVLITRDNFKEELEKKG 325 E K +T ++T DN +E LEK G Sbjct: 294 KELDKTLTLTS-EIVTPDNAEELLEKFG 320 >UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Clostridiales RepID=C6PN56_9CLOT Length = 322 Score = 223 bits (569), Expect = 6e-57, Method: Composition-based stats. Identities = 57/300 (19%), Positives = 106/300 (35%), Gaps = 21/300 (7%) Query: 22 MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASG 80 + K G+ P+FQ K + G ++I D K ++ I+ + G Sbjct: 37 TKKKHKFGYTCMTMNNPFFQVLEKSIRAEVEKNGDQLITMDPAMDVSKQIDQINDMITQG 96 Query: 81 AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140 + + D + + + ++ +I D + + V G+ Sbjct: 97 VEAVFLNPVDWEGVRPGLEALKKANIPIINFDTEVKD----MNYVTAYVGSDNKNAGKVC 152 Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSN 200 G +L K G + + +++ R G A++ I Sbjct: 153 GDDLVKRYPNGGK------IAILNCPTMNSINDRIAGFKSAIEG---KNFTIVAEQDGKG 203 Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260 D+ + A+ +L H ++ I+G ND T LG + A + K + I+ G++G Sbjct: 204 DLQTSMKLADDILQSHSDI--VAIMGGNDPTALGALAACKSA--KQSKILIYGVDGSPDA 259 Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320 + A F G+ SP G KS+E+ Y + K K LI +DN + Sbjct: 260 KKEI-ASGGQFVGTGAQSPKQIGVKSAELGYKVLNKQNVEKK--TPVQTFLINKDNVSKY 316 >UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKU7_MOOTA Length = 326 Score = 223 bits (568), Expect = 8e-57, Method: Composition-based stats. Identities = 52/299 (17%), Positives = 105/299 (35%), Gaps = 24/299 (8%) Query: 22 MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDSLAASG 80 + +G + E ++ K + + F+ +I A D K L + Sbjct: 50 KSGEKVIGVSLLTREHVFYNLIEKAIQEKAQGYKFKPIIMDASQDSNKQLAQVQDFITQK 109 Query: 81 AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140 V+ + V A+ + V +D + D V G+ Sbjct: 110 VDAIVLAPTASAGIAPAVDLAKKAGIPVFTIDIKAEG------DVKSHVATDNYAGGKLA 163 Query: 141 GQELYKE-MQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199 + ++ + +G V IT +E+ + R G DAL A +P ++ V S Sbjct: 164 AKYAAEKVLNGKGK------VAIITYSEVQSCVDREKGFKDAL--AEYPNIKVVDVENCS 215 Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259 A + +L++ P++ LI + D +G V + G ++ IG +G Sbjct: 216 GSAEKAANLTQDILLKFPDLD--LIFAVGDPFAVGAVSTIKAAGR---NVKVIGFDGNPE 270 Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318 + K + ++ PD G K +++ ++ PP+ + ++ N K Sbjct: 271 AIQEIK-NHGLWVADVVQHPDQIGGKVIDLIADYFNGKSVPPQV--LIPPTIVDASNAK 326 >UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHH7_9FIRM Length = 330 Score = 223 bits (568), Expect = 9e-57, Method: Composition-based stats. Identities = 55/309 (17%), Positives = 102/309 (33%), Gaps = 22/309 (7%) Query: 17 MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEVIK-IAVPDGEKTLNAID 74 A AE L +G ++ E + + K+ ++I A +K + +D Sbjct: 37 ADTEAAAEELVIGCTLQNLSEEFMTMLQGAMELQLKNYDNVKLIINDAESQSDKQASQLD 96 Query: 75 SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134 S A G +I D ++ V + VI +G+ V + Sbjct: 97 SFVAQGVDAVIISPVDADALASAVKTVVDAGIPVITCSADVTGDQGQ-----VWVGSSNE 151 Query: 135 KIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194 GE + + + +++ +G + + R G LK +P+ +I Sbjct: 152 NGGEIEMKYVAEKLGGKGKIA-----VLRGPLGAFAEQGRFAGYETVLK--DYPDIEIVF 204 Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254 T + A ++L E+ IV ND LG + A + G K I GI Sbjct: 205 DQTGNWQREEAMALIENLLTAGTELD--AIVCQNDGMALGALEAVKAAGKK-DQITITGI 261 Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314 + + V L +A + G + +M + L+T+ Sbjct: 262 DAI--VDALDSIKAGELDATCFQDAIGQGTNALDMAVKAARGETVERMD---IPFELVTK 316 Query: 315 DNFKEELEK 323 DN ++ Sbjct: 317 DNVDGYYDR 325 >UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional regulator n=54 Tax=Bacteria RepID=Q3MB45_ANAVT Length = 343 Score = 223 bits (568), Expect = 1e-56, Method: Composition-based stats. Identities = 53/296 (17%), Positives = 106/296 (35%), Gaps = 24/296 (8%) Query: 28 LGFLVKQPEEPWFQTEWKFADKAGKDLGFE----VIKIAVPDGEKTLNAIDSLAASGAKG 83 +G + P+F + A+K K +G E + + D + N I++ A+ Sbjct: 62 VGVTLGDLSNPFFVVMAQGAEKEAKKIGGEDVRVTVVSSGYDLNQQFNQIENFVAANTDL 121 Query: 84 FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143 +I D K V +AR VIAVD D V + GE Q Sbjct: 122 IIINAADSKGIRPAVDQARQAGKVVIAVDTAIE------ADIDATVTTNNVQAGEISCQY 175 Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ-VPTKSNDI 202 + ++ +G V+ + + + +R G + L +P+ ++ Sbjct: 176 IADRLKGKGN------VVIVNGPPVTSVIQRVDGCLKVLAK--YPDIKLLSKDQNAEGSR 227 Query: 203 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSE 262 G + +LV P++ + +ND + +G A K D +G++G E Sbjct: 228 DGGLRVMSDLLVTFPKID--AVFAINDPSGVGVDLAANQA--KRQDFFIVGVDGAPEAIE 283 Query: 263 LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318 + + + + +P + ++ + + P + LIT++N Sbjct: 284 AIASGDSLYAATATQNPRGMTQTAIQVGNDILHGKK-PESPNILIPAKLITKENVS 338 >UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S41_MANSM Length = 313 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 44/294 (14%), Positives = 108/294 (36%), Gaps = 16/294 (5%) Query: 10 AIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI--AVPDGE 67 + ++A+ + + A+ ++ L+K +F + + A++ K+ ++I D Sbjct: 13 SALISALPALAFAADKPQIALLMKTLSNEYFISMRQGAEETAKEKNIDLIVQVAEKEDST 72 Query: 68 KT-LNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDT- 125 + + ++++ A ++ D KA + +I +D + + Sbjct: 73 EQLVGLVENMIAKKVDAIIVTPNDSIAFIPAFQKAEKAGIPIIDLDVRLDAKAAEAAGLK 132 Query: 126 VPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAA 185 V + G + + L + + K+G + +D +R G++ A A Sbjct: 133 FNYVGVDNFNGGYLEAKNLAEAIGKKGNVAILEGI-----PGVDNGEQRKGGALKAF--A 185 Query: 186 GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK 245 +P+ +I + + + A ++L +P + I ND+ +G V A E G Sbjct: 186 EYPDIKIVASQSANWETEQALTVTTNILTANPNING--IFAANDNMAIGAVTAVENAGL- 242 Query: 246 AADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 A ++ G +G+ + + ++ P + E + K Sbjct: 243 AGKVLVSGYDGI--PLAIEYVKQGKMQNTIDQLPKKQVAIAIEHALKQINKQEI 294 >UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter n=4 Tax=Alphaproteobacteria RepID=Q98J19_RHILO Length = 335 Score = 222 bits (567), Expect = 1e-56, Method: Composition-based stats. Identities = 50/321 (15%), Positives = 93/321 (28%), Gaps = 18/321 (5%) Query: 2 HKFTKALAAIGLAAVMSQSAMAEN-LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI- 59 +F A G + + S AE+ L + V P+F + G + Sbjct: 24 REFLLTSVAAGAMVLAAPSVFAEDKLTILGSVPNLGFPFFVHMLNEIKAEAQAQGVNLTE 83 Query: 60 KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 K I++ VI D + + +A + V+ +D + + Sbjct: 84 SDGQNSATKQTADIEAALVQKVNAIVISPLDVNALAPAIEEAVKAGVPVVTIDRRVDGVQ 143 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 G + V K GE + + A R G Sbjct: 144 G----ILAHVGADNVKGGEAEASAMVAAFPNGAKLFH-----LQGQPGAGPAIDRNKGVH 194 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 + L QI T + A + L + K I+ ND LG + A Sbjct: 195 NVLDPLKDK-YQIIFEQTANFARAEALSVTEAGLAANG--KPDAIICANDDMALGALEAC 251 Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 D+ G + + L + G++ P + ++ + E Sbjct: 252 --AARNFTDVKIYGFDAL--PEALVAVRDGKLAGTVEQFPGQQSRTAVQIAVAYAKNKTE 307 Query: 300 PPKFTEVTDVVLITRDNFKEE 320 P + + ++I +DN + Sbjct: 308 PKEKLVLLTPIVIGKDNLDKA 328 >UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Corynebacterium matruchotii RepID=C5VEK6_9CORY Length = 325 Score = 222 bits (566), Expect = 1e-56, Method: Composition-based stats. Identities = 60/304 (19%), Positives = 103/304 (33%), Gaps = 21/304 (6%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSL 76 + + A + F + P+F + A K +LG + A D N + + Sbjct: 40 TTTGSASAKTITFALSTQANPFFVQMRESAQKKADELGLAINFQDAADDSATQSNQLANA 99 Query: 77 AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136 AASG +I D + V + + V+AVD NA + + Sbjct: 100 AASGTGVVIINPTDSDAMAPAVQQLVDEKIPVVAVDRAVNNA-----NVASYIASDNETG 154 Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196 G++ + L + G ++ +R R G + LK P ++ Sbjct: 155 GKQAAKVLSDAINGEGE-----ILVLQGKTGSSASRERGKGFDEGLKDN--PNIKVVAKQ 207 Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256 T + D ++L HP VK I ND LG + A D+ IG +G Sbjct: 208 TAEFERAKGLDVTTNLLQAHPNVK--AIFAENDEMALGAIEALGS--KAGKDVKVIGFDG 263 Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316 A L + Y S+ P ++ + + K +VV T++N Sbjct: 264 --AEDALKAIKDGRMYASIAQQPVKMAEQAVIEASKLLKGETATKKMQ--VEVVAATKEN 319 Query: 317 FKEE 320 + Sbjct: 320 VDKF 323 >UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AX36_HERA2 Length = 335 Score = 222 bits (566), Expect = 2e-56, Method: Composition-based stats. Identities = 57/320 (17%), Positives = 99/320 (30%), Gaps = 23/320 (7%) Query: 4 FTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV 63 V + A K+G ++K +FQ A++ + A Sbjct: 33 LLAGCGTTSATPVST--ATPTKPKIGLVMKSLSNEFFQQMQAGAEEYARQNATRFDFTAT 90 Query: 64 P-----DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 D + + + L V+ D A VAKA + VI +D A Sbjct: 91 GINDERDFATQIASFERLVNEQYDVIVLAPADSIALVAPVAKAVKAGIVVINIDVALDEA 150 Query: 119 KGKPMDTV-PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177 K + G+ L K + G + E D A +R G Sbjct: 151 TKKAAGIDLAFFGPDNRAGAKMSGEVLAKALGAGGKVA-----VLEGNPEADNAVQRRLG 205 Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237 DA+ + + + + L ++P+++ I+ NDS G V+ Sbjct: 206 FDDAIADGS---LNLVVAESGHWETSEGQSITAAWLKKYPDLQG--IMCANDSMAFGAVQ 260 Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 A E I +G + + AV L K ++ + Y + + Sbjct: 261 ALEAANL-LDKIKVVGFDNIPAVQPLIK--DGKMLATVEQYGAQMAAIGMDYGYRTLKGE 317 Query: 298 VEPPKFTEVTDVVLITRDNF 317 T++ LIT+DN Sbjct: 318 KF--SGWIRTELKLITKDNL 335 >UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Proteobacteria RepID=A8GD77_SERP5 Length = 305 Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 44/322 (13%), Positives = 102/322 (31%), Gaps = 19/322 (5%) Query: 3 KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-I 61 K+ K + + + +G + ++ + DK K G V Sbjct: 2 KYLKRIVLVAALGCSTSVLAE---TIGVSMAYFDQNFLTIIRHSIDKEAKARGISVQFED 58 Query: 62 AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121 A D + + + + ++G ++ + AI + ++ V+ ++K Sbjct: 59 ARGDVGRQADQVQNFISAGVDAIIVDPVNSAGTPAITKMVTKAGIPLVYVNRTPGDSKLP 118 Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181 V V + G Q +EL + +G + I A +RT Sbjct: 119 AG--VVFVGSDEKQSGTLQMEELARLANYQGNVA-----VMIGNLTDAGALQRTKDVEQV 171 Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241 + +P+ ++ Q + + D + + + ND +G + A + Sbjct: 172 VAK--YPKMKVVQKQSANYSRSEGMDLMLNWITNGESIDIVA--ANNDEMAIGAIMALQQ 227 Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301 G + + ++ GI+ L + ++ G S ++ + + P Sbjct: 228 AGKQGSKVLVGGIDAT--PDGLKALSSGKMQVTVFQDAVGQGKASVDVAQRMIKGEKLDP 285 Query: 302 KFTEVTDVVLITRDNFKEELEK 323 L+T N ++ K Sbjct: 286 --YYWIPFELVTPANMQKYAAK 305 >UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Pasteurellaceae RepID=B0URJ4_HAES2 Length = 311 Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 57/325 (17%), Positives = 112/325 (34%), Gaps = 18/325 (5%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 M K A+ GL + SQ+ +A+N +G + + W + IK Sbjct: 1 MKKTLLAMLCGGLL-LTSQAVIAKNYVIGAPMNSFADKWQTYLQDAVRDFDEKHDDVQIK 59 Query: 61 --IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 + D +N + + ++ DP + I A+ + +I V+ + + Sbjct: 60 LADSNSDPNIQVNLVQNFIDQNVDALLVVPTDPTVVKRIGVLAKKAGIPLIVVNRKPNDE 119 Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 + V + G QG + + + + ++ + D +RT G+ Sbjct: 120 HMQY--VTSFVGSDEIEGGRIQGNFIVNTLAGKNAES----LILLGPLGQDAVTKRTQGN 173 Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238 + A ++ + A ++L + + +IV ND +G + A Sbjct: 174 EEIF--AQHKNIKVVSKQEGRWERDRGLAIAENVLAGNKGIN--VIVSNNDEMAIGAILA 229 Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 T G K DI +G++ E G ++ S GY +EM Y + Sbjct: 230 TRKLGIKDEDITIVGLDATPDALEYL---GKGLDATVFQSAQGQGYTGAEMAYLAAKGEK 286 Query: 299 EPPKFTEVTDVVLITRDNFKEELEK 323 P + L+T D +E + Sbjct: 287 VPS--VKWVPFELVTPDKKEEYQAR 309 >UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01TB6_SOLUE Length = 323 Score = 221 bits (565), Expect = 2e-56, Method: Composition-based stats. Identities = 57/332 (17%), Positives = 116/332 (34%), Gaps = 16/332 (4%) Query: 1 MHK---FTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADK-AGKDLGF 56 M + T LA+ L A + + F EP+ + +K Sbjct: 1 MKRRLWMTTGLASAVLLAGCGGEVKKKQFVVAFSQANNAEPYRAAQNALMEKLFAAQPDV 60 Query: 57 E-VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQF 115 + VI A D K + +++ ++ + +A++ +A + VI ++ Sbjct: 61 KLVISDAQQDNSKQVAQVETFIRQKPDLLIVAPNERAALTAVMGQAMEAKIPVICLERDI 120 Query: 116 VNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRT 175 + + IG GQ + + K+ + V ++ R Sbjct: 121 -----LQPNYTSYIHSDNVAIGRLAGQFIVGHLTKKYGKPAGNVVAMRGLLGVEGEINRD 175 Query: 176 TGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG 235 G+ + L +PE +I P A D +L P++ ++ G ND +G Sbjct: 176 RGAKEILDK--YPEIKIVADPVADWIQAKAKDRMTEVLRAQPKID--VVYGHNDPMAIGA 231 Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295 + G + ++I +G++G+ + K G + P K+ E+ + Sbjct: 232 YLGAKELGRE-KEMIFVGVDGLGGPAGGIKKVMDGVLAATFVYPLWV-DKAVEIGTRILR 289 Query: 296 KDVEPPKFTEVTDVVLITRDNFKEELEKKGLG 327 + P V + V++T +N + EK L Sbjct: 290 EPGFVPAKDYVLESVMVTTENAPQMYEKFTLT 321 >UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Nostoc punctiforme PCC 73102 RepID=B2J7A7_NOSP7 Length = 318 Score = 221 bits (563), Expect = 3e-56, Method: Composition-based stats. Identities = 61/331 (18%), Positives = 106/331 (32%), Gaps = 23/331 (6%) Query: 1 MHKFT--KALAAIGLAAVMSQSAMAENLK--LGFLVKQPEEPWFQTEWKFADKAGKDLGF 56 M K A AI ++A + E K +GF + PW E + Sbjct: 1 MPKLLVFSAYVAIAISAFSLSGCIREKTKKIVGFSQTENIGPWRIAETNSIKEEAAKHKK 60 Query: 57 E---VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD 113 +I A K I+ L A + + + + + AR + + +D Sbjct: 61 TYDFLITDAQGQTSKQFADIEDLIARQVDVIFLAPREYEGLTPALEAARAAKIPIFLIDR 120 Query: 114 QFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 173 + G+ V + G R G+ L K + S V A Sbjct: 121 EAAGRPGE--HFVSFLGSDFIAQGRRVGEWLAKATDGK-----ASIVELTGTAGSSVAID 173 Query: 174 RTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVL 233 R G +A+ A +P +I T A +++ + ND L Sbjct: 174 RAKGFRNAI--ATYPNMKIIATQTADFSRAAAVRVMENIIQA-KGSDITAVYAHNDEMAL 230 Query: 234 GGVRATEGQGFKAADIIGIG-INGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYN 292 G ++A + G K + +G I+G A E S+ +P G + Sbjct: 231 GAIQALKSAGMKPGKDVMVGSIDGQKAALEAI--IRGELGVSVESNPR-FGPLVFATMEE 287 Query: 293 WVAKDVEPPKFTEVTDVVLITRDNFKEELEK 323 + A PP+ + +T N K+ + + Sbjct: 288 YFAGKKIPPRIILKDRLFDVT--NAKDFVNE 316 >UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A1TPE5_ACIAC Length = 322 Score = 220 bits (562), Expect = 4e-56, Method: Composition-based stats. Identities = 63/332 (18%), Positives = 112/332 (33%), Gaps = 20/332 (6%) Query: 1 MHKFTKALAAIGLA------AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL 54 M K T+ A LA + + + + + LGF E W + A +D Sbjct: 1 MTKLTRRTLATALACAPVAALLPAAAWAQKPIVLGFSQVGAESEWRTANTESIKSAARDA 60 Query: 55 GFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD 113 G E+ A E + AI S A ++ +A+ + V+ D Sbjct: 61 GIELKFSDAQQKQENQIKAIRSFIAQRVDVIAFSPVVESGWEPVLREAKAAKIPVVLTDR 120 Query: 114 QFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 173 V + + G + G+ L ++M+ DV + V A Sbjct: 121 AVNTKD--TSLYVTFMGSDFVEEGRKAGRWLVEKMKDAKGDV--NIVELQGTVGSAPAID 176 Query: 174 RTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVL 233 R G + +KA P+ +I + T + + L K ++ ND + Sbjct: 177 RKKGFEEVVKAD--PKFKIIRSQTGDFTRAKGKEVMEAFLKA-EGRKINVLYAHNDDMAI 233 Query: 234 GGVRATEGQGFKAA-DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYN 292 G ++A E G K DI I I+ V E A ++ SP + G + + + Sbjct: 234 GAIQAIEEAGLKPGKDITIISIDAVKGAFEAMMA--GKLNVTVECSP-LLGPQLMAAVKD 290 Query: 293 WVAKDVEPPKFTEVTDVVLITRDNFKEELEKK 324 A P + + + + +E K+ Sbjct: 291 IKAGKTVPKRIVTEEGIFPM--ETAAQEFPKR 320 >UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding protein n=7 Tax=Thermotogaceae RepID=B9K719_THENN Length = 323 Score = 220 bits (561), Expect = 5e-56, Method: Composition-based stats. Identities = 58/341 (17%), Positives = 110/341 (32%), Gaps = 46/341 (13%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 M K L+ + + + L +G + K P++ + AGK LG + Sbjct: 1 MRKLLVFLSVVLITGLSLA------LTIGVIGKSV-HPYWSQVEQGVKAAGKALGVDTKF 53 Query: 61 --IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 D L ++S A G G I DP + KA + VI +D ++ Sbjct: 54 FVPQKEDINAQLQMLESFIAEGVDGIAIAPSDPTAVIPTIKKALEMGIPVITLDTDSPDS 113 Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 + + G G + + + +G V+ + + +R G Sbjct: 114 G-----RYVYIGTDNYQAGYTAGLIMKELLGGKGK-----VVIGTGSLTAMNSLQRIQGF 163 Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWL-IVGMNDSTVLGGVR 237 DA+ + +I + D A A + L HP++ + + N + Sbjct: 164 KDAIADSE---IEIVDILNDEEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPS---QAL 217 Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLY------ 291 + G K + + + + L + ++ P + GY S +LY Sbjct: 218 VVKNAG-KVGKVKIVCFDTTPDI--LQYVKEGVIQATMGQRPYMMGYLSVTVLYLMNKIG 274 Query: 292 ---------NWVAKDVEPPKFTEVTDVVLITRDNFKEELEK 323 + T V ++T +N E L+K Sbjct: 275 VQNTLMMLPKVTVDGKV--DYVIDTGVDVVTPENLDEYLKK 313 >UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional regulator n=37 Tax=Gammaproteobacteria RepID=C6CIQ9_DICZE Length = 312 Score = 220 bits (561), Expect = 5e-56, Method: Composition-based stats. Identities = 72/331 (21%), Positives = 123/331 (37%), Gaps = 21/331 (6%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-I 59 M K T LAA + S A A+N ++ F P+ + A KA K+LG + + Sbjct: 1 MKKITI-LAAAMAFTMSSGLAQAQNEQIVFSTPNLAMPFEVHMQRTAVKAAKELGVNLQV 59 Query: 60 KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 + K + +++ GA+GFV+ D S V + + + V+ +D K Sbjct: 60 LDSQGSSPKQVADLENAITRGAQGFVVSPNDVNAVSGAVTEIQDAKLPVVTLDRSVKTDK 119 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 VP K G+ G + V+ + RT G Sbjct: 120 K-----VPHFGANNYKGGQAIGDFVKARFPN-----GADIVLLTGQPGSSSNIERTQGIR 169 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 D+LKA G ++ T + S+L P+ + +I+ ND LG + A Sbjct: 170 DSLKAGGSK-YRLVADQTGNWMRSEGMRIVESVLPSLPK-RPQVILSANDDMALGAIEAL 227 Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 + QG K +++ G + V L++ + + P GY ++ + Sbjct: 228 QSQGLKPGEVMVTGFDAV--PEALARVRDGWLAATADQRP---GYAVTQAMTQLTNNIRT 282 Query: 300 PPKFT-EVTDVVLITRDNFKEELEKKGLGGK 329 T +IT+DN + E+ G GK Sbjct: 283 KSAITGADYPPTMITKDNLNDA-ERIGEAGK 312 >UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6JDF0_9FIRM Length = 333 Score = 220 bits (561), Expect = 6e-56, Method: Composition-based stats. Identities = 59/306 (19%), Positives = 107/306 (34%), Gaps = 20/306 (6%) Query: 16 VMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAID 74 + +L +GF PW + ++ + G I A D + I+ Sbjct: 40 SSGSKEIGPDLTVGFAQSGNPNPWMVALTESMQQSADEYGVNYIYTDANDDMATHVANIE 99 Query: 75 SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134 + A VI + A++ +A + VI +A+ + V V Sbjct: 100 DMLAKDLDILVIAPMEDTGLEAVLDEAAEKGVPVIL------SARTTQGEYVTTVYSDQA 153 Query: 135 KIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194 GER + + +++ V + R G D + +P+ +I Sbjct: 154 WEGERCAELIGEKIPD------AKVVELRGIEGTSSVAGREKGFRDVMAE-QYPDMEIVV 206 Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA-DIIGIG 253 T + A DA ++L + ND LG V+A + G DI +G Sbjct: 207 EQTANFSRQEAMDAMANILQAKGPDAIDAVYCHNDEMALGAVQAIKDAGLTPGEDIQVVG 266 Query: 254 INGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLIT 313 I+G EL K + G++ SP HG E++ + + + + +IT Sbjct: 267 IDGQKEAWELVK--SGEMLGTVQCSP-KHGPTVFEVIQKILDGETVQKE--TIVPDQVIT 321 Query: 314 RDNFKE 319 ++N E Sbjct: 322 KENVDE 327 >UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic sugar-binding n=4 Tax=Vibrionaceae RepID=Q1Z3C1_PHOPR Length = 355 Score = 220 bits (560), Expect = 7e-56, Method: Composition-based stats. Identities = 51/323 (15%), Positives = 100/323 (30%), Gaps = 21/323 (6%) Query: 5 TKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADK-AGKDLGFEVIK-IA 62 + L A + A + ++G + ++ + A K E+I A Sbjct: 52 LFITGLMALVACGGEKADSNVTRIGVAIPNFDDTFLVNMKDSMSAYAAKQDNLELIFVDA 111 Query: 63 VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122 D K L I + G ++ + + ++++ ++ + Sbjct: 112 KEDTVKQLGQIQNFIIQQVDGIILVPVNTDATQPMTDDILKAGIELVYLNRRPT----YL 167 Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182 D V V + GE Q + + + + ++ A RT G D Sbjct: 168 PDGVAYVGSEELRFGEEQAKYAASH------SDGGNIGIIMGMMTVEAAILRTQGVEDFF 221 Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242 K PE I + T + + ++ I+ ND LG ++A Sbjct: 222 KEK--PEYNIIRKQTALWQRSQGMVVMENWINSGDKLDI--IISNNDDMALGAIQALRAA 277 Query: 243 GFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302 G K D I IG++ L + ++ + + + + P Sbjct: 278 G-KLDDTIVIGVDAT--PDGLMAIKNGALDATVFQDGRSQARGAIDAALSGIN--KTPRD 332 Query: 303 FTEVTDVVLITRDNFKEELEKKG 325 L+T+DN E K+G Sbjct: 333 KITWIPAELVTKDNLAEFEAKQG 355 >UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8H8H8_ARTCA Length = 322 Score = 220 bits (560), Expect = 8e-56, Method: Composition-based stats. Identities = 54/319 (16%), Positives = 104/319 (32%), Gaps = 16/319 (5%) Query: 5 TKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAV 63 G + S A+ +G +V ++P K + G ++ I + Sbjct: 19 LTLTGCAGSSNATSSGEAAKTYNIGVVVLDLQDPDLAHMTDAMKKTADEKGVKLNITDSK 78 Query: 64 PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPM 123 D LN ++ L ++ D + ++ + + +F A+G + Sbjct: 79 KDVGSELNQVEDLLTRQVDAVIMQPLDGDASQNAAKRVIAANIPLFILSTEF--AEGSDV 136 Query: 124 DTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALK 183 + + T G+ Q + L K M G V + V RR G + Sbjct: 137 GYKSYIGVDDTVAGQMQAEYLNKLMPNGGNLVFAAGVY-----GASWTDRRKNGFDKTIN 191 Query: 184 AAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQG 243 +I A L + P + +V ND +G A G Sbjct: 192 E----NFKIVAEFQAKGSRDDAKRNMEDTLQRFPSGQIDAVVANNDEMAIGAASAIADAG 247 Query: 244 FKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKF 303 A +G++G + L + ++ G K+ E++ +++ ++ Sbjct: 248 RTAEFKAVVGVDGTEP--ALQDIEGGTMSATVRQDSAGQGVKAVEVVTDFLNGGNVDNRY 305 Query: 304 TEVTDVVLITRDNFKEELE 322 T LIT+DN E L+ Sbjct: 306 T--LPFTLITKDNLSEFLK 322 >UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transport system n=1 Tax=Gloeobacter violaceus RepID=Q7NMF9_GLOVI Length = 317 Score = 219 bits (559), Expect = 9e-56, Method: Composition-based stats. Identities = 51/295 (17%), Positives = 98/295 (33%), Gaps = 19/295 (6%) Query: 5 TKALAAIGLAAVMSQSAMAEN-LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV 63 AL A+ L A + N +G + ++ +++ + + V A Sbjct: 13 LAALCALVLGACAQNGSEGGNRPVVGVSLLTRQDAFYRELERGLKEEAAKQKLTVRLDAG 72 Query: 64 P-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122 D + +++ V+C D + +A+A D+ V D + K Sbjct: 73 EFDLARQQGQLENYTVQKVAAIVVCPTDSQGIGPAIARANQADIPVFTADIR-----AKE 127 Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182 V + G G+ K + RG V I + + R G +AL Sbjct: 128 GAVVSHIASDNVAGGRLAGEYAAKRLNGRGQ------VAIIDQPYIQSVIERVRGFEEAL 181 Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242 K +P ++ T + AA +L ++ + +ND + G V A E Sbjct: 182 KP--YPNIRVVARLTGDGVRDRSLKAAEDLLQSQRKLD--AVFAVNDESAFGVVSAIEAA 237 Query: 243 GFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 G K I +G + + +L + + P G ++ + +A Sbjct: 238 GRKG--IFVMGYDASEEARKLIAGGKSPLQADIAQDPYRIGQETIRAVATHLAGQ 290 >UniRef50_B2IIE3 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Rhizobiales RepID=B2IIE3_BEII9 Length = 314 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 52/318 (16%), Positives = 113/318 (35%), Gaps = 11/318 (3%) Query: 8 LAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV--IKIAVPD 65 A LAA+M+ +A AE +G ++ ++ + + +G I+ A D Sbjct: 5 FTAAVLAALMAGTASAE--TIGVSMQNFDDNFQTLLRQGLQARASQVGGVTLQIEDAQAD 62 Query: 66 GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDT 125 + LN +++ A+ +I D S I A A+ + ++ ++ + N P + Sbjct: 63 IARQLNQVNNFIAARVDAIIITLTDTSAASGITAAAQKAGIPLVYLNLEPENINRLPKNQ 122 Query: 126 VPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAA 185 V T G + + ++K+G + + + +R RT+ + L A Sbjct: 123 -AYVGSKETDAGRLGAEAACQLLKKKGKAGQAQIYILMGDLAHQASRDRTSAVKETLAAG 181 Query: 186 GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK 245 I + + A D + + + I +D +G ++A + G Sbjct: 182 ECKGVTIADERSAAWMRTNAMDVTTNWITTGRPID--AIFANSDEMAIGAIQALKAAGVS 239 Query: 246 AADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTE 305 D+I +G+N A L + + ++ + + + Sbjct: 240 KNDVIVVGVNA--AQDGLVAMEDGDLHVTVFQNAKGQSASALDAAVALARGKSV--DRQV 295 Query: 306 VTDVVLITRDNFKEELEK 323 + L+T +N + K Sbjct: 296 MVPFELVTPENMAKYNNK 313 >UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RZI4_9CLOT Length = 347 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 54/301 (17%), Positives = 110/301 (36%), Gaps = 23/301 (7%) Query: 21 AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAAS 79 E+ K GF P+F + ++ + G E+I A D +K ++ ++ L Sbjct: 63 GGKEHYKFGFAATTMNNPFFHAIQEAIEEVVDENGDELIVIDAQNDAQKQISMVEDLLTQ 122 Query: 80 GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139 G +C D + + + + V+ D + +++ GE Sbjct: 123 GIDLLFLCPIDSASIKSSLEQCGKAGVPVVNFDTDVYDVDLVN----TIIVSDNYYAGEL 178 Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199 +++ K++ + V +T+ + +R G D KA G+ +I Sbjct: 179 VAEDMMKKLPEGSK------VCILTSPSAEACIKRQNGFKD--KADGY--FKIVSEIDGK 228 Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259 D + A +L +P++ +ND + +G V+A E Q K D++ G++G Sbjct: 229 GDTATSLGIAEDVLQGNPDL--GAFYAINDPSAIGCVQALESQ--KKTDVLVYGVDGQPM 284 Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 + + SP G +S Y ++ + + LI ++N E Sbjct: 285 GKQAIS--EGTMEATAAQSPINIGKESVAAAYKILSGESVEKNI--LVPTFLIDKNNVTE 340 Query: 320 E 320 Sbjct: 341 Y 341 >UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z758_9NEIS Length = 313 Score = 219 bits (558), Expect = 1e-55, Method: Composition-based stats. Identities = 57/326 (17%), Positives = 112/326 (34%), Gaps = 25/326 (7%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLK-LGFLVKQPEEPWFQTEWKFADKAGKDLG---F 56 M+ L A LA + + S A LK +G V P+F K A+ A K +G Sbjct: 1 MNLRYTVLTAAVLAGLAAPSFAARPLKSVGVAVGDLANPFFVAIGKGAEDAAKKIGGPGV 60 Query: 57 EVIKIA-VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQF 115 +V ++ D + I++ A+ ++ DP ++ KAR + Sbjct: 61 KVTTVSSKYDLNTQVGQIENFIANKVDVILVNASDPMGIEPVLKKARAAGI-------AV 113 Query: 116 VNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRT 175 V + VM G + + +++ RG V+ + + R Sbjct: 114 VAVDVGAVGADATVMSDNAMAGAESCKFMAQQLGGRGN------VVIVNGPPVTAVSARV 167 Query: 176 TGSMDALKAAGFPEKQIY-QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLG 234 G L +P ++ G + ++L H ++ + +ND T +G Sbjct: 168 AGCKKVL--GNYPGIKLLSDNQDAHGSRDGGMETMANLLTAHKKID--AVFAINDPTGIG 223 Query: 235 GVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWV 294 A + G + ++G + K + + F S +P + ++ Y+ + Sbjct: 224 AELAVKQAGRSDVK-LIAAVDGAPDAEKALKDKKSLFAVSAAQNPYTMATMAVQIGYDIL 282 Query: 295 AKDVEPPKFTEVTDVVLITRDNFKEE 320 P K + +T+ N Sbjct: 283 NGKR-PAKSQVLLPTPAVTKANVASY 307 >UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LSY2_BACS4 Length = 314 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 50/332 (15%), Positives = 107/332 (32%), Gaps = 27/332 (8%) Query: 1 MHKFTKALAA--IGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG--- 55 M K L A + + ++ LG + W + A+ K L Sbjct: 1 MKKVLFLLVASILLIVGCSEDTSGDGETVLGLAMPSATHGWMGALIQNAEDQAKALVEDG 60 Query: 56 --FEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD 113 + I + +N ++ L A G V+ + S I + + ++ VD Sbjct: 61 TIDDYIFTTADNPSAQVNNVEDLIAQGVDAIVMLPIESDALSPIALQVEEAGIPLVIVDR 120 Query: 114 QFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 173 + N + V G G+ +++ G V+ I ++ Sbjct: 121 ELTNDAATVV-----VKGDNYGAGVNAGEYFMEQLGGNGK------VVEIAGPSNSVTQQ 169 Query: 174 RTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVL 233 R+ G +A++ + + +I + + ++L PE+ + +D L Sbjct: 170 RSDGFREAIEGS---DIEIVASQSGEFSTETSLQVMENILTSQPEID--AVYTQDDGMAL 224 Query: 234 GGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNW 293 G ++A G+ G V E+ + L SP + + + + Sbjct: 225 GVLQAINEANRTDIQ-FITGVAGSKDVYEII-MDDGLITATFLYSP-LMVKEGVIIGADL 281 Query: 294 VAKDVEPPKFTEVTDVVLITRDNFKEELEKKG 325 + +P V +T+DN + + + Sbjct: 282 ANGE-DPDSAEVVVPATPVTKDNVDDHYDPEA 312 >UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothece sp. ATCC 51142 RepID=B1WQL3_CYAA5 Length = 380 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 53/323 (16%), Positives = 116/323 (35%), Gaps = 27/323 (8%) Query: 16 VMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-------IAVPDGEK 68 + Q + ++ +L K +P++Q + ++LG + + + D +K Sbjct: 68 LSHQGTATQPWQIAYLFKTRSDPFWQQMEQGVQTVAQELGIKTLVKFTEEKPNTLGDVKK 127 Query: 69 TLNAIDSLA-ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVP 127 ++ I L + G VI D I+ KA +KVI +D + + Sbjct: 128 QISTILELIDNNDLDGLVIAPEDSIQLVPIIEKATQQGIKVIVIDTPIDTDQ-----ILT 182 Query: 128 LVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANEL-DTARRRTTGSMDALK-AA 185 V + G+ G+ + +++ + + ++ + + + R G ++ LK A Sbjct: 183 FVTFDNFEGGQILGEWVIQKLTQSSRRNNKINILILEGSLHEENTIERRQGFLEGLKRAN 242 Query: 186 GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK 245 +I + + + A + L + P + +I+ +D +G A + Sbjct: 243 KNYSLEILDLKSADWETKKAKMITQAWLEKFPTID--VIMAADDQMAVGASEAVQEANKS 300 Query: 246 AADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTE 305 II G +G K ++ P ++++ N + K+ + Sbjct: 301 G--IIITGFDGTPYGLNAIK--TGQIDATINQLPRTQISLITQLMINSLEKEQTTLPLCQ 356 Query: 306 VTDVV------LITRDNFKEELE 322 + LIT+DN E L Sbjct: 357 LIGQEQTENSLLITQDNINEALN 379 >UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geobacillus RepID=A4IPB9_GEOTN Length = 318 Score = 218 bits (555), Expect = 3e-55, Method: Composition-based stats. Identities = 64/335 (19%), Positives = 121/335 (36%), Gaps = 38/335 (11%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAE----------NLKLGFLVKQPEEPWFQTEWKFADKA 50 + K TK + + M+ A ++ ++K P+++ A A Sbjct: 2 IKKKTKLFSTAVVLTCMALLAGCGGSKGASGGGGEERVAVVLKTLSSPYWKYVEAGAKAA 61 Query: 51 GKDLGFEVIKIAVP---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMK 107 GK+LG +V + + + +N I+ V+ P ++ A + Sbjct: 62 GKELGVDVTVVGPNAESEVMQQINMIEDQLNQSPGALVVSPSQPDTVVPVLETAT---VP 118 Query: 108 VIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANE 167 V+ +D K + + + G G+ L +QK + A Sbjct: 119 VLLIDT-----DAKLKNKTSFIGTENYEAGYEGGKLLSSLLQKGDKVA-----IISGALG 168 Query: 168 LDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGM 227 R G+ AL+ AG I +D A ++L ++ +VK + Sbjct: 169 NTATDERVKGAKAALEEAG---MVIVAEQPADSDKTKAMSVMENILQKNNDVKG--VFAA 223 Query: 228 NDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSS 287 ND LG +RA E +G D+ IG +G + + G++ +P GY+ Sbjct: 224 NDDMALGVLRAVEAKGL---DVKVIGTDGT--LEAVESILDGKLAGTIAQNPYKMGYEGV 278 Query: 288 EMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELE 322 + + + + V +IT+DN +E+LE Sbjct: 279 KNALAAINGEKVDKRINS--GVEVITKDNAQEKLE 311 >UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S343_9CLOT Length = 373 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 43/315 (13%), Positives = 101/315 (32%), Gaps = 26/315 (8%) Query: 14 AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTL 70 A + + + K+G++ K P+ + + AGK +GF I A E+ + Sbjct: 68 AQIATSVKAGGDYKIGYIAKNTTNPYMVAQSAGVEAAGKAMGFTAITQAPTTADSVEEQV 127 Query: 71 NAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVM 130 ++++ ++ D V KA+ + V+ + Sbjct: 128 QLMENMITQDVDAIIVHCADSNGIMTGVRKAQDAGVLVLTIGTPAAEDTFLRT------G 181 Query: 131 MAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEK 190 + + G + + ++ +G ++ A R G L + + Sbjct: 182 VDYYESGYTMAKAVADKLGGKGKF-----IILEGPAGASNAIERLNGINTGL--SEYEGI 234 Query: 191 QIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADII 250 +I T + +++ Q+ ++ ++ ND + LG V+A D++ Sbjct: 235 EIVASQTANFKRTEGMSVTENLIQQYTDID--AVIACNDESALGAVQALTAANMS--DVL 290 Query: 251 GIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDV- 309 G +G + K + + P G+ + ++ EP Sbjct: 291 VCGFDGSVDATNAVK--EGTMFATYNTDPYGSGFVACAYAVKYLNDKTEPEGKFIPFPTA 348 Query: 310 ---VLITRDNFKEEL 321 L+ D + + Sbjct: 349 ANDPLVIADTVQNYI 363 >UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC 27755 RepID=B0G492_9FIRM Length = 378 Score = 217 bits (554), Expect = 4e-55, Method: Composition-based stats. Identities = 45/304 (14%), Positives = 92/304 (30%), Gaps = 20/304 (6%) Query: 24 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP---DGEKTLNAIDSLAASG 80 +GF + +A LG + A E+ L I++ + G Sbjct: 79 SKYTIGFCGMTLNNEYHIIVANAVQQACNALGIKCEIQAGSQHASVEEQLTIIENYVSQG 138 Query: 81 AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK-GKPMDTVPLVMMAATKIGER 139 G ++ + + + + ++ VI +D + ++ +P G+ Sbjct: 139 VDGIILVPAASEGLISALQECESANIPVINLDTKLDDSTLKTLGKDIPFYGTDNYVGGQL 198 Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199 G+E+ + V R G +D + + Sbjct: 199 VGEEVAQMYPDGCKTAILRGV-----QGQTNDDDRYNGFLD----KAGDVVDLVAEQHAN 249 Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259 + + A +++ + +++ +I ND +G +A + G I +GV Sbjct: 250 WETDQGYTAIQNIIQANKDLQ--VIYCENDLMGIGAYQAVDEAGLT-DQIKIFSYDGV-- 304 Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 L F + P G + A T LIT +N K+ Sbjct: 305 TEGLQYVVDGKFVSTCAQQPIKMGKLGVANMAKIFAGKDAES--YIDTGCELITSENAKQ 362 Query: 320 ELEK 323 LE+ Sbjct: 363 TLEE 366 >UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasmic component) n=1 Tax=Planctomyces maris DSM 8797 RepID=A6C460_9PLAN Length = 321 Score = 217 bits (553), Expect = 5e-55, Method: Composition-based stats. Identities = 60/325 (18%), Positives = 109/325 (33%), Gaps = 28/325 (8%) Query: 8 LAAIGLAAVM---------SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE- 57 L AIG S S G + P+F + K + G Sbjct: 13 LLAIGSIGCSNGSDSHSPQSDSTADSGRLFGASFQTMNNPFFVDLGEGLKKELEANGDRL 72 Query: 58 VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117 VI A + K N + L G + + + + +A + +I VD Sbjct: 73 VILDAQFNSLKQKNDLSDLILQNVAGIFVNPVNWEGLKGSLLEANRKKVPIIIVDAPVKK 132 Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177 A + + V V + GE Q L K ++ ++ + + R G Sbjct: 133 ADEELI--VCTVASDNVRAGELAAQALAK-------VNPKARLVVLHLSVNKACIDRVAG 183 Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237 L+ PE +I V GA ++ ++P++ + +ND LG + Sbjct: 184 FKTELEK--HPEMKILDVQEAQGTTEGARPVMRDLIGRYPDLD--AVFAINDPNALGVIS 239 Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 A + K + + ++G A + QA + + P G ++E + + + Sbjct: 240 ALDSAN-KLDQVTIVTVDGSQA--GIKAIQAGKLHSTSAQFPREIGKIAAEKMLAHLKGE 296 Query: 298 VEPPKFTEVTDVVLITRDNFKEELE 322 V LIT +N ++ LE Sbjct: 297 PVEKDVK--VRVELITAENAEQYLE 319 >UniRef50_UPI0001B4C057 putative D-ribose-binding protein component of ABC transporter n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B4C057 Length = 325 Score = 216 bits (552), Expect = 6e-55, Method: Composition-based stats. Identities = 52/313 (16%), Positives = 94/313 (30%), Gaps = 20/313 (6%) Query: 3 KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-I 61 A G +++A + + +G V + +F + K G +VI Sbjct: 18 TMVVGATACGRGGNGAKTADGKQITIGLAVANLQADFFNQIKQSVTAEAKKKGIKVIVSD 77 Query: 62 AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121 A D +N I + + V A + V+ VD GK Sbjct: 78 ARGDAATQVNQIQDFISRQVSAIIYIPAGATAAGVPVKAANRAKIPVVTVDRNPPGEPGK 137 Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181 + + G + KE +G + R G A Sbjct: 138 -----SFIASDSVAAARTLGNYVVKESGGKGQLA-----ILQGQIGTTPQVDRQKGFGQA 187 Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241 LK A P ++ A+ + ML HP + G D+ LG +A + Sbjct: 188 LKNA--PGIKVVSQQPADWAQDKAYSVSQDMLQAHPGIDIL--WGQADAMALGAAQAVKA 243 Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301 G K + +G +G ++ L + +++ G S + + P Sbjct: 244 SGSKKKH-LIVGFDG--DIAGLKAVRRGTVDATMVQQTRKMGRMSVNTAVDIIKGKKVPA 300 Query: 302 KFTEVTDVVLITR 314 ++ L+T Sbjct: 301 --QQLQPAFLLTS 311 >UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales RepID=C5EPY8_9FIRM Length = 356 Score = 216 bits (551), Expect = 9e-55, Method: Composition-based stats. Identities = 51/318 (16%), Positives = 103/318 (32%), Gaps = 24/318 (7%) Query: 13 LAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE------VIKIAVPDG 66 +++ ++ + + W + + L E I + D Sbjct: 36 VSSEAAKPSNDGGYVVALCNYSIGNSWRAQMEQEFVAEAEKLKAEGVVSEYYITNSNDDI 95 Query: 67 EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTV 126 K ++ + L G VI P + V +A +KV++ D+ + V Sbjct: 96 NKQISDMQDLITKKVDGIVITAASPTALAPAVEEATEAGIKVVSFDNVVDTDE-----QV 150 Query: 127 PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAG 186 V + T+ G L K++ +G V + + R G+ + K Sbjct: 151 ATVGIDQTEFGRVCADWLVKKLDGKGKIVVLNGIA-----GTANDTMRWNGAEEVFKQ-- 203 Query: 187 FPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA 246 +P+ +I S D A SML +PE+ + + G + A G K Sbjct: 204 YPDIEILGSANASWDYAQGKAAMESMLSAYPEIDG--VWSQGGAMTQGAIDAFIAAGRKL 261 Query: 247 ADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEV 306 + A+ + + G P G ++ + + + P + T Sbjct: 262 --VPMTSEGNNGALRAWIENRDNGLSCIAPSDPTYSGAEALRTVIKSLDGEEVPKRVT-- 317 Query: 307 TDVVLITRDNFKEELEKK 324 D+ ++T DN + + Sbjct: 318 LDIPVVTEDNVDKYYRQD 335 >UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KN00_RHISN Length = 339 Score = 216 bits (550), Expect = 1e-54, Method: Composition-based stats. Identities = 54/296 (18%), Positives = 110/296 (37%), Gaps = 14/296 (4%) Query: 5 TKALAAIGLAAVMSQSAMAENLK-LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IA 62 +A++ LA ++ A A+ +K +G+ V + P +Q K A+K + G +VI Sbjct: 12 LGLIASVALAGSLAVPAQAQEMKTIGWSVAYFDHPVYQLMMKGAEKVADEAGCKVIFADG 71 Query: 63 VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122 D + ID+ A G G ++ V K + ++ D + G+P Sbjct: 72 KDDPSVQASHIDNFIAQGVDGIILTPTVSDPLIPAVKKVNDAGIPLVMADRRMQT-HGQP 130 Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182 + LV K G G++ K + +G V+ + R + + Sbjct: 131 IKWEALVSWDMVKSGTIGGEQTVKAIGGKGN-----IVVVEGTPGAGSTIDRGNAFYEVI 185 Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242 + +P+ +I + + + ++L + + I M D GG++A + Sbjct: 186 EK--YPDIKILAKIPANFNRAKGQEVTENILQRFKPGEIDAIYYMADEMTFGGLQAIKAA 243 Query: 243 GFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 G + I ++G +L +A+ + PD + +L + V Sbjct: 244 GR-LGEFKIISVDGQKEAMDLLRAREIDYEAIF--HPDDQA-VAVRILCDIVNGRT 295 >UniRef50_B0NBQ1 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NBQ1_EUBSP Length = 352 Score = 215 bits (549), Expect = 2e-54, Method: Composition-based stats. Identities = 54/355 (15%), Positives = 111/355 (31%), Gaps = 34/355 (9%) Query: 1 MHK--------FTKALAAIGLAAVMSQSAMAEN--LKLGFLVKQPEEPWF----QTEWKF 46 M K A +A E +K+G + + ++ + + Sbjct: 1 MKKMKSRIARICLALCLAAMMAGCAGTEKKEEKTGIKIGVAIYRGDDAFISSLCASLENA 60 Query: 47 ADKAGKDLGFEVIK---IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARG 103 + LG +V+ A + +D G + D + + IV KA+ Sbjct: 61 IKDKEEKLGKKVVVNIADAKNSQSSQNDQVDDFIRKGYDAICVNMVDRTVAAVIVDKAKE 120 Query: 104 YDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQ------KRGWDVKE 157 + +I + + V + V A + GE +GQ + + + D K Sbjct: 121 AGIPIIFFNREPVEEDMAIWNQTYYVGTDAREAGELEGQIVADAWKSQESRIDKNGDGKL 180 Query: 158 SAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHP 217 VM + RT S+ + G ++ T + A++ + Q+ Sbjct: 181 QYVMLEGEQVHQDSLIRTEYSVKTILKEGIVTEK-LASGTGNWMRSPAYELMQEWIGQY- 238 Query: 218 EVKHWLIVGMNDSTVLGGVRATEGQGFKAAD-IIGIGINGVDAVSELSKAQATGFYGSLL 276 + +++ ND +G + A G + I +GI+G + L K G+++ Sbjct: 239 GSQIEVVLSNNDEMAMGAIEALVENGMSGGNGPIVVGIDGTED--GLEKIIKGEMEGTVM 296 Query: 277 PSPDVHGYKSSEMLYNWVAKDVEPPKF------TEVTDVVLITRDNFKEELEKKG 325 + + +T DN +E ++ K Sbjct: 297 NDARGQAESILGIACACAEGKDPKQEVPELKGQYVRVPHSPVTADNVQEFIDYKN 351 >UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9KAG4_BACHD Length = 323 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 54/342 (15%), Positives = 102/342 (29%), Gaps = 39/342 (11%) Query: 1 MHK------FTKALAAIGLAAVMSQSAMAEN-----------LKLGFLVKQPEEPWFQTE 43 M K L ++ LAA S + + +G + + + Sbjct: 1 MKKNKTILIAFSILMSLLLAACGSGGETSGDGNGESTGDSGQKVIGVSISNLD-EFLTYM 59 Query: 44 WKFADKAGKDL-GFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKA 101 + + FE I A D + + +++ + ++ D IV Sbjct: 60 QDAMKEEAANYPDFEFIFSDAQNDSTQQMAQVENFISRNVDAIIVNPVDTTSAVDIVNMV 119 Query: 102 RGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVM 161 + +I + F V + + G Q +E+ K + G + Sbjct: 120 NDAGIPIIIANRTFDGVD----QATAFVGSESIQSGLLQMEEVAKLLNNEGNIA-----I 170 Query: 162 AITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKH 221 + RT G+ ++ ++ T D + L E+ Sbjct: 171 MDGELGHEAQIMRTEGNKQIIEEHD--GLEVVLQGTAKFDRSEGMRLMENWLNSGTEID- 227 Query: 222 WLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDV 281 +V ND LG + A E G K D+I GI+ A E K ++ Sbjct: 228 -AVVANNDEMALGAILALEAVG-KLDDVIVAGIDATPAALEAMK--EGKLDVTVFQDAKG 283 Query: 282 HGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEK 323 G S ++ + + L+T +N +E K Sbjct: 284 QGATSVKVAVQAANGEDVEDA---MIPYELVTPENVEEYEAK 322 >UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Arthrobacter sp. FB24 RepID=A0JVZ4_ARTS2 Length = 318 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 66/316 (20%), Positives = 120/316 (37%), Gaps = 25/316 (7%) Query: 8 LAAIGLAAVMSQSAMAEN--LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVP 64 +IGL + S A + +K+G V P+FQ E K A+ GK +G EV+ ++A Sbjct: 21 FGSIGLTGCATASGAAGDRPMKIGVTVANSTNPFFQQESKTAESYGKSVGAEVLSQVANE 80 Query: 65 DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124 D + N ID +G K VI D V +A + VI VD+Q NA Sbjct: 81 DVQTQSNQIDQFITAGVKFIVIDAADTDGVGPAVKRAVSAGIPVIGVDNQSKNA------ 134 Query: 125 TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA 184 + + GE + L ++ +G + + + R TG L Sbjct: 135 -TVNITTDNKQAGEISCRSLADKLGGKGK------IAILNGTPVSAVDDRVTGCKGIL-- 185 Query: 185 AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF 244 +P+ +I N A A +L +P++ + +ND + +G A E +G Sbjct: 186 GQYPDIKIVADQRGENSRDSALPIATDILTANPDLDGF--FAINDPSAVGVQLAAEQKGA 243 Query: 245 KAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFT 304 ++ ++G + ++ A + P ++ ++ + V P + Sbjct: 244 S---VVITSVDGASSATDAIAA-GGLITATAAQDPAALMRQAIDLGISIVNGKE-PDQKV 298 Query: 305 EVTDVVLITRDNFKEE 320 + L+ N + Sbjct: 299 ILVPTELVDASNVAKY 314 >UniRef50_UPI000185D1D6 putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Capnocytophaga sputigena ATCC 33612 RepID=UPI000185D1D6 Length = 903 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 53/320 (16%), Positives = 103/320 (32%), Gaps = 26/320 (8%) Query: 2 HKFTKALAAIGLAAVMSQSAMAEN-LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE--- 57 ++ L A ++ +G E+ W QT + + + Sbjct: 4 RRYHILFLYFALFACLACQRERNPRYVIGVSQCS-EDLWRQTMNEELKREVALYQADAEV 62 Query: 58 VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117 +I+ D K + I+ V+ + + + ++ KA + VI VD + Sbjct: 63 LIRSVKDDTPKQIADIEWFIEQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRKIAT 122 Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177 V +IG+ G ++ +G + + R G Sbjct: 123 ES-----YTAYVGANNYQIGKEAGLYAIGVLKGKGNIAE-----VRGTKGSTSDAERHKG 172 Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237 +DALK A PE QI + A + +HP + L+ MND G Sbjct: 173 FVDALKNA--PEVQIVAETWGNFLQADAKTQMQQIFQEHPHID--LVFAMNDPMAAGTHE 228 Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 A K IG++ + V + + + S + G K E+ + Sbjct: 229 AAMQFNGKIP--FIIGVDALQQV-GIQNIENSVQDASFIYP--TGGEKVIELAMKILH-- 281 Query: 298 VEPPKFTEVTDVVLITRDNF 317 +P + + + ++ + N Sbjct: 282 KQPFQRENILNTTVVDKSNV 301 >UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8_STIAU Length = 331 Score = 215 bits (548), Expect = 2e-54, Method: Composition-based stats. Identities = 51/303 (16%), Positives = 110/303 (36%), Gaps = 20/303 (6%) Query: 21 AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---PDGEKTLNAIDSLA 77 A K+ ++K P+F K A +A K+LG +++ E+ + I+ L Sbjct: 44 AAPNARKIALVMKTLTNPFFIEMEKGARRAQKELGIDLLVKTAAQETSIEQQIQIIEDLI 103 Query: 78 ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA--KGKPMDTVPLVMMAATK 135 VI D ++ A+ +++I +D++ KG+ M VP + + K Sbjct: 104 RMKFDAIVIAPGDSLRLVPVLKAAQEAGIRIINIDNRLDAEAMKGQGMAPVPFISVDNEK 163 Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195 + +E+ K A + D +R+R G+ A + P ++ Sbjct: 164 AAYESAGFIAREIHK-----PAQAAILEGIRSADNSRQRRVGAERAFREN--PLIRLVAR 216 Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255 + + I D + HP++ L+ ND LG ++ + G + + Sbjct: 217 ESANWKIDEGRDVTRRLFSDHPDI--TLLFCANDMMALGAIQFLQESGRYG--VKVAAYD 272 Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315 ++ + ++ GY+ + + + P + + L+T + Sbjct: 273 ALEEAKRAIL--SGRMEVTVNQQAAEQGYQGIILASRVLNGEAVPE--VVLVETSLVTLE 328 Query: 316 NFK 318 + K Sbjct: 329 SLK 331 >UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacteria RepID=A1WLB7_VEREI Length = 328 Score = 215 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 67/305 (21%), Positives = 109/305 (35%), Gaps = 17/305 (5%) Query: 17 MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDS 75 ++ A A LK+GF + P++ + A+ A K G E+I A D K N I Sbjct: 25 LTPVAHAAGLKIGFSQVTLQSPFYVQLKEGAEAAAKAGGDELIFLDANGDVNKQNNDIQD 84 Query: 76 LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135 L +I +P +A A+ + VI VD + K Sbjct: 85 LLTRKVDVLIINPVNPDAVKPAIAAAQKNGVPVITVDRSINGGG-----VTAHLGRDNVK 139 Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195 +G+ G + E++K+G + + R G DALK +GF +I Sbjct: 140 MGKAVGDAVLAELKKKG-TTRGKVIEIQGDAGGTVMAARRDGFHDALKGSGF---KIVAG 195 Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255 P A A +L HP+VK ++ ND +G ++ G K D+ G++ Sbjct: 196 PYAEYTRANAVTAMQDLLQAHPDVK--VVYAHNDDMAMGALKVLAEAGKK--DVFVAGVD 251 Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315 G+ + + L P G + + A P T +T+ Sbjct: 252 GLSEALASMAGGD-QYVATALNDPRYLGDMTVQTARAIKAGKKVPAFVDAGT--KAVTKA 308 Query: 316 NFKEE 320 N E Sbjct: 309 NVGEF 313 >UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3KM03_RHISN Length = 312 Score = 215 bits (547), Expect = 2e-54, Method: Composition-based stats. Identities = 44/324 (13%), Positives = 98/324 (30%), Gaps = 14/324 (4%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-I 59 M + A+ LAA + + +G + + + + + + Sbjct: 1 MKRMIIGTTAMFLAASSAYAGD-----IGVTIAS-NDTFLAVMVQAMKDEAAKTNQPLQV 54 Query: 60 KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 + A D K L+ I + A+ ++ + I A + ++ V++ + Sbjct: 55 EFADADVNKQLSQIQNFIAAKVDAIIVNVVESTATPTITKMAADAGIPLVYVNNTPSDLD 114 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 + G Q +E+ + +++ G ++ A +R+ Sbjct: 115 QLGPK-AAFIGSQEIDAGTLQAKEVCRVLKEEGKTEDAGILIIQGVLAQHAAEQRSKAVH 173 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 D + +I T D A D + + K ++ ND LG V + Sbjct: 174 DVVATPECNFMKIIDEQTAQWDPVKAQDLMTNWITA--GHKPVAVLSNNDDMALGAVNSL 231 Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 + G++ D+I GI+ + + ++ G S + + Sbjct: 232 KAAGWEMKDVIVAGIDATK--EAMHYVKTGDLDATVFQDAVGQGAGSVDAAIKLAKGEKV 289 Query: 300 PPKFTEVTDVVLITRDNFKEELEK 323 L+ N L K Sbjct: 290 ESPVW--IPFELVNAANVDTYLNK 311 >UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Bacteria RepID=D1ANT2_SEBTE Length = 330 Score = 214 bits (546), Expect = 3e-54, Method: Composition-based stats. Identities = 57/335 (17%), Positives = 117/335 (34%), Gaps = 36/335 (10%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLK-------------------LGFLVKQPEEPWFQ 41 M K + + ++S E K + ++K P++ Sbjct: 1 MKNIMKIFLLLTMFLLVSCGGAKEEAKTEDGNEPAKTEQKAEGQAEIAIVLKTLSNPFWV 60 Query: 42 TEWKFADKAGKDLGFEVIKIAV---PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIV 98 + +K G +V IA D ++ L I++L + G K I P + Sbjct: 61 EMKEGIEKEAAAQGIKVDIIAASSEEDVQEQLRLIENLLSKGYKAIGIAPLSPVNTIPAI 120 Query: 99 AKARGYDMKVIAVDDQFVNA--KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVK 156 +A + V+ +D++ K + V K+G + + + ++ + G Sbjct: 121 VEANKKGIYVVNIDEKVDMEQLKKSGGSVLAFVTTDNVKVGAKGAEYIIGKLPEGGEVA- 179 Query: 157 ESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQH 216 + + + R G+ +A KA + ++ D A D A +++ ++ Sbjct: 180 ----IIEGKSGNASGEFRRQGATEAFKADS--KFKLVASQPADWDRSKALDVAANLIQKY 233 Query: 217 PEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLL 276 P +K I ND+ LG V+A G K I+ +G +G ++ Sbjct: 234 PNLK--AIYACNDTMALGAVQAVANAG-KTGQILVVGTDGAPEART--SIDEGKLNATVA 288 Query: 277 PSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311 P + G S ++L + + E +V + Sbjct: 289 QDPAMIGATSLKILIEAIKDKPQISPDIEAKEVPV 323 >UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5M8_9PLAN Length = 333 Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats. Identities = 43/296 (14%), Positives = 91/296 (30%), Gaps = 18/296 (6%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSL 76 S +G + P+F G++V + D + N + Sbjct: 43 STKGSVSKGTVGVSLLTTTNPFFNVIADNIKSELVKEGYDVEVVSGEFDVARQKNQVKDF 102 Query: 77 AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136 +G V+C D + + +A + V D + + V + Sbjct: 103 IVAGHAAIVLCPCDSRGIGPAIQEATAAGIPVFTADIACL---APGAEVVSHIATDNLGG 159 Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPE----KQI 192 G++ + + + + G V+ + ++ R G + + I Sbjct: 160 GKQAAEAMIEAVGSAGGK-----VVILDFKAAESCILRVQGFKEVIDKHNSENPSSAITI 214 Query: 193 YQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGI 252 ++ AA L HP++ I +ND + LG A E KA + + Sbjct: 215 VSELPGDGQKDKSYKAAEDALQAHPDLAG--IFAINDPSALGARAALEKAN-KADQVKIV 271 Query: 253 GINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTD 308 G +G + + + PD G + + + ++ + P + T Sbjct: 272 GFDG--QPDGMQAIDEGKIFADPIQHPDQIGKRVAASIVSYFRGEEVPKEQLIPTG 325 >UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional regulator n=49 Tax=Proteobacteria RepID=Q1R0N3_CHRSD Length = 318 Score = 214 bits (545), Expect = 4e-54, Method: Composition-based stats. Identities = 59/321 (18%), Positives = 114/321 (35%), Gaps = 18/321 (5%) Query: 2 HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI 61 + A A+G+ + S ++ + + +V P++ TE K A++ + LG+E Sbjct: 6 KRLLIAALAVGVPLLASGASAQDKGLMSIIVNDTSNPYWFTEGKIAEETAEKLGYEADVS 65 Query: 62 A-VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120 + D ID+ + A+ ++ + V KA + V ++ + Sbjct: 66 SHKGDTNTESRQIDTAITNQAEAIILDPANADGSIGAVRKAVEAGIPVFIINAEINQQGL 125 Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180 V + Q+ K + V A + A R+ G Sbjct: 126 AEAQLV----SNNAQGAALGAQQWIKSVGD-----SARYVELKGAPSDNNAATRSNGYET 176 Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240 L + +P + + D F+ SML +P++ ++ ND LG + A + Sbjct: 177 VL--SQYPGLEKVGSDVANWDRTQGFNKTQSMLQANPDIDG--VISGNDEMALGAISALK 232 Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWV-AKDVE 299 G K D++ G +G E KA ++L + + M +V + Sbjct: 233 EAG-KLDDVVVGGFDGSPDAVEAVKA--GEMDYTVLQPVAIFSEMAVRMADKYVTTGETG 289 Query: 300 PPKFTEVTDVVLITRDNFKEE 320 ++ D LIT DN + Sbjct: 290 VDGEKQLFDCFLITSDNVDDY 310 >UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional regulator n=11 Tax=Clostridiales RepID=B8I0K4_CLOCE Length = 342 Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats. Identities = 56/332 (16%), Positives = 103/332 (31%), Gaps = 36/332 (10%) Query: 1 MHKFTKALAA----IGLAAVMS--------------------QSAMAENLKLGFLVKQPE 36 M K AL + A + S + + +GF E Sbjct: 1 MKKKLIALLMCFSLVIAAGCGASDTNSSDSESSESAQSTSANDSGSNKLITIGFSQVGAE 60 Query: 37 EPWFQTEWKFADKAG-KDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLG 94 W A + GF++I A E + A+ + I Sbjct: 61 SDWRVANTASMKSALSEKNGFKLIFADAQQKQENQIKAVRDFISQDVDVIAIAPVTETGW 120 Query: 95 SAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWD 154 ++ +A+ D+ VI VD + V K G + L M+++G Sbjct: 121 ETVLGEAKDADIPVIIVDRMIKVSD--DSLFSCWVGSDFQKEGVNAAEWLVNYMKEKGKT 178 Query: 155 VKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLV 214 K++ V+ RT G D +K + I T + S L Sbjct: 179 DKQNVVVLQGTIGSSAEIGRTKGFGDTIKK--YDNFNILAQQTGEFTQAKGQEVMESFLK 236 Query: 215 QHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA-DIIGIGINGVDAVSELSKAQATGFYG 273 Q+ ++ +++ ND+ G + A + G D+ + + V A A Sbjct: 237 QYNDID--VVIAQNDNMAFGAIDALKAAGKAPGKDVTIVSFDAVKA--AFKSMIAGDMNV 292 Query: 274 SLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTE 305 S+ +P +HG + +E+ + + Sbjct: 293 SVECNP-LHGPRVAELAKKLMNDEKVEKIQYV 323 >UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CKL2_9FIRM Length = 348 Score = 214 bits (545), Expect = 5e-54, Method: Composition-based stats. Identities = 57/352 (16%), Positives = 119/352 (33%), Gaps = 40/352 (11%) Query: 1 MHKFTKALAAIGLAAVMS-----------------------------QSAMAENLKLGFL 31 M K + AI LA + + ++ +G Sbjct: 1 MKKKISLILAIVLAGSLLAGCGSSRTENEGTQEDTAKETENTDSKENTVSEGDSFLIGVA 60 Query: 32 VKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPD 90 + P+F + ++L E+ ++ A D +N I + A G ++ Sbjct: 61 SPNNKVPYFSKLVEGMTDLQEELNVELDVQDAQDDTNTQINQIQTFIAEGCDLIIMMPVQ 120 Query: 91 PKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP--MDTVPLVMMAATKIGERQGQELYKEM 148 + I + ++ ++ VD + + K +D + V + G +QG+ +++ + Sbjct: 121 LESLIPIAMECNEAEIPIMTVDRKLSASDPKDVGVDLITHVGCDDVEGGRKQGELVHQLL 180 Query: 149 QKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDA 208 G + + R G + L P +I D A Sbjct: 181 GDEGSIA-----LIQGTLGASSQVLRQQGLEEYLSENA-PGIEIVAAQNSDQDQSQAITV 234 Query: 209 ANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQA 268 + L + + + IV + + LG V A + IG + V + KA+ Sbjct: 235 TQNFLTRFAKGEIDAIVAQDPYSALGAVDAIKSASRDELLGTVIGYDLPSEVLDSIKAKD 294 Query: 269 TGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320 YGS L +P G + ++ Y + + E + T++ ++ +N +E Sbjct: 295 --MYGSTLQAPYDMGALTLQVAYQCLTEGSEEIEANTYTEIPVVYIENAREY 344 >UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AQW5_SEBTE Length = 313 Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats. Identities = 58/329 (17%), Positives = 113/329 (34%), Gaps = 34/329 (10%) Query: 1 MHKFTKAL-AAIGLAAVMSQSAMAEN------------LKLGFLVKQPEEPWFQTEWKFA 47 M K L + + + S+ A +G + + P++ + Sbjct: 1 MKKILLVLVTMLFIFSCGSKDQAAGKTEDKPTETGEKTYTIGVSLLTQQHPFYLSLKDAI 60 Query: 48 DKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDM 106 +K ++ + IA D K ++ I+ +I D K A V KA ++ Sbjct: 61 EKEAAAQNVKLNVSIANQDLNKQISDIEDFITKKVDAIIISPVDSKGVLAAVKKAEAANI 120 Query: 107 KVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITAN 166 VI VD +D V G+ G+E+ + + +G V I Sbjct: 121 PVITVD-----VPAIGVDVAAHVATDNYTGGKIAGEEMARLLNGKGE------VAVIEYP 169 Query: 167 ELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVG 226 +D+ +R G + + +P+ +I + P A AA +M+ + + I G Sbjct: 170 TVDSVVQRIEGFKEVIAK--YPDIKIVAIQ-AGITRPEALTAAQNMIQANKNLGG--IFG 224 Query: 227 MNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKS 286 D L V A + G K I IG +G+ + + + F + P+ G + Sbjct: 225 FGDDAALAAVAAVKSAG-KEDQIKVIGFDGMQEARDAVTKEKS-FAAVITQYPEDMGKIA 282 Query: 287 SEMLYNWVAKDVEPPKFTEVTDVVLITRD 315 + + + + T++ Sbjct: 283 VDTTLKILKGEQVEKNIPVTPGIF--TKE 309 >UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-binding protein IbpA n=3 Tax=Caulobacteraceae RepID=B8H228_CAUCN Length = 326 Score = 213 bits (543), Expect = 7e-54, Method: Composition-based stats. Identities = 56/309 (18%), Positives = 104/309 (33%), Gaps = 18/309 (5%) Query: 13 LAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLN 71 + A AE + +P+F + + LG +V + A + K ++ Sbjct: 28 MTGCARGGAEAE---VVVSFNDLSQPFFVAMRRELEDEAAKLGVKVQVLDAQNNSSKQIS 84 Query: 72 AIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMM 131 + + A GAK ++ D K + + VI+VD K VP V Sbjct: 85 DLQAAAVQGAKVVIVAPTDSKALAGAADDLVEQGVAVISVDRNIAGGK----TAVPHVGA 140 Query: 132 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ 191 G + K V+ ++ R G D L A G P + Sbjct: 141 DNVAGGRAMADWVVKTYP-----AGARVVVITNDPGSSSSIERVKGVHDGLAAGG-PAFK 194 Query: 192 IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 251 I T ++ A ++L + +I+ +ND +G + A G +A + Sbjct: 195 IVTEQTANSKRDQALTVTQNILTSMRDTPPDVILCLNDDMAMGALEAVRAAGLDSAKVKV 254 Query: 252 IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311 IG + + L++ +A ++ +P + + + + + VL Sbjct: 255 IGFDAI--PEALARIKAGEMVATVEQNPGLQIRTALRQAVDKIKSGAALKSVS--LKPVL 310 Query: 312 ITRDNFKEE 320 IT N E Sbjct: 311 ITSGNLTEA 319 >UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacteria RepID=B2T1S7_BURPP Length = 339 Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats. Identities = 56/327 (17%), Positives = 105/327 (32%), Gaps = 22/327 (6%) Query: 4 FTKALAAIGLAAVMSQSAMAE-----NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV 58 G+A + A+ + LK+GF + PW E K G+++ Sbjct: 24 LLALAIGFGVATAHADDALPKLASKTPLKVGFAQTESNNPWRLAETKSFKDIAAKCGWQL 83 Query: 59 I-KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117 + A K ++ I ++ A V + K + +V +A+ + VI VD Sbjct: 84 VMTDANSSNSKQVSDIQNMIAQHVDLLVFPPREEKPLAPVVLQAKKAGIPVILVDRDVDQ 143 Query: 118 AKGKPM-DTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTT 176 + K D + + G R L K + + A R Sbjct: 144 SVAKAGRDYITFIGSDFIDQGHRAADWLVKATGGKAK-----IIELEGTTGASAANDRKK 198 Query: 177 GSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 236 G + + P I + ++L HP+V + ND LG + Sbjct: 199 GFDEIIAKN--PGMTIIASQSGDFARDKGRQVMETLLQAHPDV--TAVYAHNDEMALGAI 254 Query: 237 RATEGQGFKAA-DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295 A + G + DI + I+G + A S+ SP G + ++ + Sbjct: 255 AAIKAAGKQPGKDIQIVTIDGTKGGMDAIAA--GELGASVQSSPF-FGPLACDVAQRYAK 311 Query: 296 KDVEPPKFTEVTDVVLITRDNFKEELE 322 + P + N ++ ++ Sbjct: 312 GEKIP--TWVKVSDKFYDKSNVQQNMQ 336 >UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Proteobacteria RepID=A8I1T9_AZOC5 Length = 324 Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats. Identities = 63/323 (19%), Positives = 115/323 (35%), Gaps = 25/323 (7%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 M K K + AA+++ SA A + + K P+FQT A+ A K +G +V+ Sbjct: 1 MSK-LKLFGVVLPAALLATSAFAADETIAVFTKNQTNPYFQTVRVGAEAAAKAMGAKVVH 59 Query: 61 ---IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117 + L+ I+ + V D K V + + V+ V Sbjct: 60 YIPTKPDSIPEQLSQIEDVIVKKPSAIVFVPVDYKAMVPGVEQINDAKIPVVNV-----T 114 Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177 + + V +G G+ L KEM +G V+ T R G Sbjct: 115 DRSAGGKFLAFVGADDYSLGLETGRYLLKEMGGKGN-----VVILEGVKGSLTNVDRVRG 169 Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237 DALK F + ++ + +++ HP++ ++ ND+ +G + Sbjct: 170 FNDALKE--FKDVKLLASQPANYQRLQGLQVMENLMQSHPQIDG--VLAANDAMAIGAIE 225 Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 A +G KA +GING + K + S + + G + + + K+ Sbjct: 226 ALDGANRKA---KVVGINGTKEAVDAIK--SGKLLASGDYNGFLQGCIGTMVAIRALRKE 280 Query: 298 VEPPKFTEVTDVVLITRDNFKEE 320 + V ++ N+K Sbjct: 281 TIVNEV--VLKPTVVNASNYKPY 301 >UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Bacteria RepID=ALSB_ECOLI Length = 311 Score = 213 bits (543), Expect = 8e-54, Method: Composition-based stats. Identities = 58/323 (17%), Positives = 121/323 (37%), Gaps = 21/323 (6%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 M+K+ K + + ++S SA A ++K P++ K + K LG V Sbjct: 1 MNKYLKYFSGTLVGLMLSTSAFAAAE-YAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDI 59 Query: 61 IA---VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQF-- 115 A D + L + L+ KG VA+A + ++ +D++ Sbjct: 60 FASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDM 119 Query: 116 VNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRT 175 N K + V +G + + ++ G +V + + R Sbjct: 120 DNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVA----IIEGKAGNASGEARR 175 Query: 176 TGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG 235 G+ +A K A + ++ D A D A ++L ++P +K I ND+ +G Sbjct: 176 NGATEAFKKAS--QIKLVASQPADWDRIKALDVATNVLQRNPNIK--AIYCANDTMAMGV 231 Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295 +A G K ++ +G +G+ ++ +A ++ +P G +++ + Sbjct: 232 AQAVANAG-KTGKVLVVGTDGIPEARKM--VEAGQMTATVAQNPADIGATGLKLMVDAEK 288 Query: 296 KDVEPP----KFTEVTDVVLITR 314 P ++ D +L+T+ Sbjct: 289 SGKVIPLDKAPEFKLVDSILVTQ 311 >UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional regulator n=9 Tax=Bacteria RepID=D1AQM7_SEBTE Length = 326 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 54/336 (16%), Positives = 112/336 (33%), Gaps = 30/336 (8%) Query: 1 MHKFTKALAAIGL--------------AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKF 46 M K + L AA + K+G L+ P +F + Sbjct: 1 MKKIIFLFTILLLIMSCGNKQETKAEGAAGNTAETKEAKKKIGVLIPGPVG-YFVAVREG 59 Query: 47 ADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYD 105 DKA + E+ A D K L+ ++ L + I D V A + Sbjct: 60 IDKAAAENNVEITYSDAGWDASKQLSQVEDLISKKVDLIAIAAVDSNAAKTAVRMANEAN 119 Query: 106 MKVIAVDDQFVNAK-GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAIT 164 + ++A + + + G+ + V + G+ G+ + ++G V+ Sbjct: 120 IPILAFTNAIGDKENGEYEGLITYVGQNEVETGKLTGELAKSLLGEKGGK----VVLIEG 175 Query: 165 ANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLI 224 R G M+AL ++ T + + A ++ ++ + +I Sbjct: 176 RPGTSPQINRRKGVMEALDTN--KNFEVVYTQTSNWEKEQALKIVEDLIQKNQTID--VI 231 Query: 225 VGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGY 284 + +D++ +G A + K I+ IG+ G L+ ++ G+ S GY Sbjct: 232 IAQDDNSAIGAGMALKEANLK-DKILVIGLGGS--TEGLNAVKSGLIDGTTYMSAVEEGY 288 Query: 285 KSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320 + ++ + P V + + N + Sbjct: 289 TAITAAVKYLNGEKVEP--VTQMKQVEVNKSNVESF 322 >UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=B0G317_9FIRM Length = 345 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 53/298 (17%), Positives = 105/298 (35%), Gaps = 18/298 (6%) Query: 22 MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASG 80 E+ K+GF E P+F T + E+I D + + I + G Sbjct: 57 EQESWKIGFSGIDMENPYFLTLESAIKEEVDGKNCELIVKDPKTDPDMQASQIQEMIDEG 116 Query: 81 AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140 ++ D + + + + D+K++ VD Q + G Sbjct: 117 INAIILSPVDWEKITPSLEALKEADVKIVNVDTQVKEMD----YVDAYIGSDNYNAGVLC 172 Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSN 200 G++L K G V + ++ R TG + L A +I S Sbjct: 173 GEDLIKRCPDGGK------VAILECPTQNSVNERITGFEETLAKAEN-GFEIVAREDTSG 225 Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260 + + +AA +L ++ ++ I+ ND +G A + I+ G++G + Sbjct: 226 EFQKSLEAAQKILSENSDI--VAIMCGNDQMAVGAKTAMNVA--EQGQILIYGVDGSPDI 281 Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318 + K G++ SP G ++ + N + + E +V +I ++N Sbjct: 282 KKELKKTENQIAGTVAQSPISMGKDAANTVLNILNGKDYEKEIKE--NVFMINQENVD 337 >UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE Length = 364 Score = 213 bits (542), Expect = 9e-54, Method: Composition-based stats. Identities = 60/316 (18%), Positives = 112/316 (35%), Gaps = 29/316 (9%) Query: 16 VMSQSAMAENLKLGFLVKQPEEPWFQTEWKFAD---KAGKDLGFEVIKI-----AVPDGE 67 + + + +KLG + K E +++T + + + K+ G+ + D + Sbjct: 61 LGAMPKVEGEIKLGSVAKAFENEYWRTLKEGEELGTQKFKENGYNITLDMKSAQGEGDEQ 120 Query: 68 KTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVP 127 L+ ++ + ++ V KA+ ++ VI V+ G + Sbjct: 121 GQLSIVEDMINKKYTALLLSPISDGNLVPGVEKAKKNNIPVINVN------DGIIKNADI 174 Query: 128 LVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGF 187 V A GE + + K++ G + I + AR+RT G + +K+ Sbjct: 175 FVGPKAIMNGELAAEWISKKIGGEGEVA-----IVIGMPKAFAARQRTLGFENWMKSNA- 228 Query: 188 PEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA 247 +I + D A D A + ++P +K I ND LG A Sbjct: 229 AGVKIVEKQNADWDRAKAKDLAEIWIKKYPNLK--AIFCNNDVMALGVQEAVNASKR--- 283 Query: 248 DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVT 307 DI+ +G++G+ E + ++ P G + EM + P T Sbjct: 284 DILVVGVDGIKEAYE--SIRKGEMDATVDSFPLYKGQIAVEMALRSLGGQQLP--RVIWT 339 Query: 308 DVVLITRDNFKEELEK 323 LI N E EK Sbjct: 340 PQALIDSTNVNEPSEK 355 >UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding protein, CUT2 family n=1 Tax=Meiothermus silvanus DSM 9946 RepID=C1XS39_9DEIN Length = 320 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 56/318 (17%), Positives = 110/318 (34%), Gaps = 18/318 (5%) Query: 3 KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA 62 + A A+ A A+ L + L+K P++ A + +I A Sbjct: 2 RLLTASTAVLAALAWGTLGFAQQLTIAALMKTTANPFWGAMEAGIRDAAQKGNVNLILQA 61 Query: 63 ---VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA- 118 D E LNA +L + V+ + + +A ++ ++ +D A Sbjct: 62 VASETDVEPQLNACLNLLQRKPQALVVAAINSVNLLPCLKQANQQNIPIVDLDGNLDPAV 121 Query: 119 -KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177 + + + + + G + + ++ G ++ T R G Sbjct: 122 LQREGVKIAFSISSDNRRAGASAAEYVVSKL---GQGFSGKVLVIEGLAGNVTGAARRDG 178 Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237 + LK P QI D A + N L +HP++ I ND+ LG V Sbjct: 179 FTERLKQIA-PNAQIVATLPGDWDRLKAANITNDTLQRHPDL--AAIYCANDTMALGAVE 235 Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 A G K ++ +G +G + +A S+ P + G ++ E + + + Sbjct: 236 AVFAAGKK---VLVVGTDGN--SDAVKSIRAGRLNASVAQLPFLVGSRAIENVLKVIKGE 290 Query: 298 VEPPKFTEVTDVVLITRD 315 PK + ++I + Sbjct: 291 QVDPKI--IVPTLVIDKA 306 >UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUB2_9BACT Length = 327 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 49/326 (15%), Positives = 99/326 (30%), Gaps = 25/326 (7%) Query: 3 KFTKALAAIGLAAVMS-----QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE 57 + + I L + A + + P+F + + G Sbjct: 21 RRLLLCSLIVLVGCEKKPAPDTAGAAGSRFFAVSFQTLNNPFFVDLNDGLKQVIDEHGDR 80 Query: 58 VIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116 ++ A K N + + + + + A + AR + VI VD Sbjct: 81 LVTLDAQFSSLKQKNDLSDVIEQKPAAIFLNPVNWESVRATLIAARNAKIPVIVVDAPVP 140 Query: 117 NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTT 176 +A + V G Q L G ++ V + + R Sbjct: 141 DAD----LVLAQVASDNVAAGRLAAQAL-------GDARPQAKVAILQYSVNKACVDRVA 189 Query: 177 GSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 236 G D L + FP I +L + P++ + +ND +G V Sbjct: 190 GFTDVLAKS-FPGATIIARQDVKGTSEATRPVMRDLLGRFPDLD--AVFPINDPGAIGCV 246 Query: 237 RATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296 A + G ++ + ++G ++ G + + P G ++ Y+ +A Sbjct: 247 SAIDAAGRS-GKVLVVTVDGSREAAQFIL--NGGIHSTSAQFPKKIGSLAAGAAYDHLAG 303 Query: 297 DVEPPKFTEVTDVVLITRDNFKEELE 322 + V L+T+ N E ++ Sbjct: 304 KPVDKEIK--VPVTLVTKANAAEFVK 327 >UniRef50_P39325 ABC transporter periplasmic-binding protein ytfQ n=141 Tax=Bacteria RepID=YTFQ_ECOLI Length = 318 Score = 212 bits (541), Expect = 1e-53, Method: Composition-based stats. Identities = 67/322 (20%), Positives = 110/322 (34%), Gaps = 15/322 (4%) Query: 6 KALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVP 64 + L ++A MS A+A L +GF E W E A + G + I Sbjct: 4 RLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQ 63 Query: 65 DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124 E + A+ S A G I ++ +A+ ++ V +D Sbjct: 64 KQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD--KSL 121 Query: 125 TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA 184 + V G+ G L KE+ + + V A R G +A+K Sbjct: 122 YMTTVTADNILEGKLIGDWLVKEVNGK----PCNVVELQGTVGASVAIDRKKGFAEAIKN 177 Query: 185 AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQ-HPEVKHWLIVGMNDSTVLGGVRATEGQG 243 A P +I + + + S + + ++ ND V+G ++A + G Sbjct: 178 A--PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAG 235 Query: 244 FKAADIIGIG-INGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302 K I G I+GV + S+ +P + + L + P K Sbjct: 236 LKPGKDILTGSIDGVPDI--YKAMMDGEANASVELTP-NMAGPAFDALEKYKKDGTMPEK 292 Query: 303 FTEVTDVVLITRDNFKEELEKK 324 +T L D KEELEKK Sbjct: 293 -LTLTKSTLYLPDTAKEELEKK 313 >UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter n=1 Tax=Yersinia kristensenii ATCC 33638 RepID=C4U114_YERKR Length = 322 Score = 212 bits (540), Expect = 1e-53, Method: Composition-based stats. Identities = 58/325 (17%), Positives = 107/325 (32%), Gaps = 22/325 (6%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG-FEVI 59 M AL+ +A + + + P F + + K LG ++I Sbjct: 8 MTTLAIALSTFAFSANAAPKGKDAPVTILVSALSYSFPHFVFLQEQLEAEAKTLGNVKII 67 Query: 60 -KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 K + I++ G G +I D + ++ A + V+ +D Sbjct: 68 RSDGQLSAPKQIADIEAAIVQGVDGIIIAPADATALAPVLRTAIKEGISVVTIDRPVNGV 127 Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 + + V +RQG+ + K + + TA R+ G Sbjct: 128 P----EVIANVAADNLIGAQRQGEAVEKLFP-----QGATIINLQGIPGDKTANDRSKGV 178 Query: 179 MDALKAAGFPEK-QIYQVPTKSNDIPGAFDAANSMLV--QHPEVKHWLIVGMNDSTVLGG 235 D L PE + T + ++L +P +IV ND + LG Sbjct: 179 HDTLDK--HPELYKFVAEQTARFNRDQGLSVTENLLTGLANP---PTVIVAGNDDSALGA 233 Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295 +A E +G K I G +G L + G++ P G ++ ++L +++ Sbjct: 234 AQAVEARGLK-GKIAIFGYDGS--TDALKAVRDGVLTGTVDQYPGKQGREAVKILTDYIR 290 Query: 296 KDVEPPKFTEVTDVVLITRDNFKEE 320 P + V IT N + Sbjct: 291 TGARPATVDVLVSPVAITSKNLNDA 315 >UniRef50_B0PA90 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PA90_9FIRM Length = 338 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 60/354 (16%), Positives = 117/354 (33%), Gaps = 48/354 (13%) Query: 1 MHKFTKALAAIGLAAV-------------------------MSQSAMAENLKLGFLVKQP 35 M + A+ + +AA + A + L G +V Sbjct: 1 MKRILSAILSAAMAASLVACGSSQSHSSAPADTPAPSVPAESAADAPDDKLTFGLVVMST 60 Query: 36 EEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTLNAIDSLAASGAKGFVICTPDPK 92 ++ T A +A +G E++ D + ++ +++L S ++ D Sbjct: 61 NSDYWLTLKDGAQEAVDAIGGELVFTGPADNNDIQGQVSLMENLINSKVDAILLTPLDSD 120 Query: 93 LGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRG 152 +A V KA + VI +D K + G + L + + G Sbjct: 121 ALAAPVEKAMDAGIPVIVIDSAVNTDK-----YTSFIATDNVAGGRMAMERLIESIGGSG 175 Query: 153 WDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSM 212 V +A+ + + R G+ + AA + D A A ++ Sbjct: 176 EVVVVNALA-----GIPSNDARGQGAEEY--AATVDGITVLPQQHC-LDQAEAMTATENV 227 Query: 213 LVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFY 272 ++ +P +K I + LG +A +G KA +I + + E+ + Sbjct: 228 IIGNPNLKG--IFATFNRGALGAAQAIVSKG-KAGEIKMVAFDA--DADEIKLLEDGTID 282 Query: 273 GSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKKGL 326 ++ P G E + + P +VV+ T+DN +E K L Sbjct: 283 ALVVQQPYEMGKIGIEYAVKALNGEEVPKTVAP--EVVIATKDNMNDEAIHKVL 334 >UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clostridium tetani RepID=Q896U1_CLOTE Length = 324 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 58/328 (17%), Positives = 120/328 (36%), Gaps = 23/328 (7%) Query: 3 KFTKALAAIGLAAVMSQSAMAENLK-LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI 61 + L+A LA +SA K + +VK + ++ + A+KA K+ G +I Sbjct: 10 TMSVMLSAGVLAGCGQKSASDSTKKNIALIVKSTDSEYWLSVKAGAEKAAKEAGANIIFK 69 Query: 62 A---VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 D + +N ++ G V+ D K V A + ++ VD + Sbjct: 70 GPATEQDIQGEVNIVEDAINQKVDGIVLAASDTKALIQPVENAINAKIPLVTVDSGVDSD 129 Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 K + K + + + K G + V + TA +R G Sbjct: 130 K-----VASFIATDNEKAASQAADVCAELIGKSGKVGVVNFV-----PGVSTAVQREKGF 179 Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238 D + + ++ + +D A +L +P+VK I N+ + LG +A Sbjct: 180 RDGM--SKHSGIELLKTQYSQSDKSKAMAITEDILTANPDVK--AIFAANNRSALGVAQA 235 Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 +G+G A + + + E+ + ++ +P G + + + + + Sbjct: 236 LKGKGV-AGKVKVVAFDA--DPDEIKGIEDGSITALIVQNPYKMGEEGVKNVLALMKGET 292 Query: 299 EPPKFTEVTDVVLITRDNFKEELEKKGL 326 + T V ++T++N + +K L Sbjct: 293 VEKRID--TGVTIVTKENINDPEVQKVL 318 >UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9FWH4_SORC5 Length = 332 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 48/314 (15%), Positives = 98/314 (31%), Gaps = 18/314 (5%) Query: 10 AIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDG-EK 68 A A + + +GF E W K + +++ + Sbjct: 30 ASSAEAAGRKPKALTEIVVGFSQTGAESSWRIAHSKSIQAEAEKRHVQLLFADGQNVHNN 89 Query: 69 TLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPL 128 +NA++ G VI + + +A+ + V+ + + Sbjct: 90 QVNAVNGFITKGVDVIVIAPQESVGWKPTLKEAKRAGIPVVLTSRGVDAEEDLYETVMV- 148 Query: 129 VMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFP 188 G R G+ L K+ + + + D A R TG +A+ P Sbjct: 149 --ADFVWEGRRAGEWLAKQTNGK-----ARIIELVGTPAADVAVMRKTGFAEAIAK--HP 199 Query: 189 EKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA- 247 + +I + ++L H + + ND LG ++A + G K Sbjct: 200 DMKIIASQSGDFTRTKGKTVMETLLSAHKG-EINAVYAHNDDMALGAIQAIQAAGLKPGQ 258 Query: 248 DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVT 307 DI+ I I+ V E ++ +P +HG + + V + P + + Sbjct: 259 DILVISIDAVKPAFEAM--MEGKLNATVECNP-MHGPLLFDTIDKIVRGEKVPKR--TIV 313 Query: 308 DVVLITRDNFKEEL 321 + R+ + Sbjct: 314 PGQIFEREQAAAAI 327 >UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC 35704 RepID=B0NEL2_EUBSP Length = 321 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 56/334 (16%), Positives = 108/334 (32%), Gaps = 32/334 (9%) Query: 1 MHKFTKALAAIG-------LAAVM----SQSAMAENLKLGFLVKQPEEPWFQTEWKFADK 49 M K + +G L S+S + + +GF K + + + A+ Sbjct: 1 MKKRFLGVLLVGAMVMSTVLTGCGNKKESKSGGEDKITIGFSSKTNSDTFVKAIADAAED 60 Query: 50 AGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKV 108 A K+ G ++I A D K +N ++L A ++ D + + +V+ A D+ + Sbjct: 61 AAKEQGVDLIMADAEGDVNKQINDCETLIAQQVDALIVIPQDVEGSAPVVSMANEADIPI 120 Query: 109 IAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANEL 168 I + + + V + GE G + + Sbjct: 121 IICNGDIADK-----NYTAFVGCTDQESGEILGTWFND-----NVEHGSQICIIEGPMGQ 170 Query: 169 DTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMN 228 R G + ++ T + A A L + + K IV N Sbjct: 171 SGQVGRYAGFEEV---GMLDNFEVLSCQTANWKRDEAMALAEDWLTTYGD-KLKAIVCEN 226 Query: 229 DSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSE 288 D +G + A + G D++ G++G++ + + S+L G + E Sbjct: 227 DDMAMGALSACKAAGRT--DVVIGGVDGLED--AIQAVKDGELGVSVLQDSAGQGEGAVE 282 Query: 289 MLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELE 322 + + + IT DN LE Sbjct: 283 VALQIINGEDYQKD--TRIPFHAITSDNVDAYLE 314 >UniRef50_C6V848 D-ribose-binding periplasmic protein n=11 Tax=Gammaproteobacteria RepID=C6V848_ECOBD Length = 357 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 64/329 (19%), Positives = 123/329 (37%), Gaps = 22/329 (6%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 M + A+ L A +S SA+A++L L + K + ++QT + A K+LG + Sbjct: 42 MKTR-HFIYALSLLACVSSSALAKDLNLPVVSKGFQHEFWQTVKMGTEAAAKELGDKTSY 100 Query: 61 IAVPD---GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117 + D + + +++ A G ++ D + +V A +KV+ D + Sbjct: 101 VGPADETQIAEQIQLVENAMAQKPNGLLLAALDANALAPLVETANSRGIKVVTFDSGINS 160 Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177 V V K G + L ++ +G + +A R+ G Sbjct: 161 DIP-----VSFVATNNRKAGAQAADALASQVNNKGKVG-----IIAHVAGTSSAIERSEG 210 Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237 M+ +K +P+ ++ V D A D M+ +P++ I G N+ + LG Sbjct: 211 FMERMKE-KYPDIKVLPVQYSDGDPQKAMDKTIDMIQANPDLAG--IYGTNEGSTLGVAN 267 Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 A + Q K + IG + +A+ K G ++ GY+ + L ++ Sbjct: 268 AIDSQNLK-GKVKVIGFDSTEAIINFLK--NGVIQGFVVQDAYQIGYQGIKTLNAALSGQ 324 Query: 298 VEPPKFTEVTDVVLITRDNFKEELEKKGL 326 + V + +N K L Sbjct: 325 AVEKEID--IPVKFVNAENINTPEIDKLL 351 >UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Sinorhizobium RepID=A6UHJ3_SINMW Length = 322 Score = 212 bits (540), Expect = 2e-53, Method: Composition-based stats. Identities = 49/315 (15%), Positives = 103/315 (32%), Gaps = 19/315 (6%) Query: 15 AVMSQSAMAENLKLGFLVKQPEEPWFQTE-WKFADKAGKDLGFEVIKIAVPD-GEKTLNA 72 A + ++GF EPW +A K E+I D EK + Sbjct: 24 PAGDAVAQDKKFRIGFSQATTIEPWRAQFNKDIIAEAAKHPDVELIITDGEDRTEKQVAD 83 Query: 73 IDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMA 132 +++L ++ + + +V +A + V +D + V Sbjct: 84 VENLIRQEVDALLVSPKESAGLTGVVQQAIDAKIPVFVLDRNVETDQ-----YTQFVGGD 138 Query: 133 ATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ- 191 IG G+ + + +G + + V A R G + P + Sbjct: 139 NKLIGRAAGEYAVELLGGKGK-AQGNIVEIWGGMGTQPAHDRHDGFHEFTDKE--PGIKN 195 Query: 192 IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 251 + + A++ + L + ++ L+ G ND G A + G + +I Sbjct: 196 LLDKQSGDWKQDQAYNIMATALRNNEKID--LVYGHNDPMAYGAYLAAKDAGRE-KEIKF 252 Query: 252 IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311 IGI+ + ++ + L + G + ++ + T D + Sbjct: 253 IGIDALPN-EGVTWVSNGELTATFLYATP--GAEGLRQAVKFLKGEKVEKTVT--LDTLK 307 Query: 312 ITRDNFKEELEKKGL 326 +T +N + ++ GL Sbjct: 308 VTEENAAQIMKDNGL 322 >UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Gammaproteobacteria RepID=A6VWF2_MARMS Length = 322 Score = 211 bits (539), Expect = 2e-53, Method: Composition-based stats. Identities = 57/337 (16%), Positives = 112/337 (33%), Gaps = 29/337 (8%) Query: 1 MH---KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPW-----FQTEWKFADKAGK 52 M K + +A + ++ A K+G V + W + AD K Sbjct: 1 MKYKNKIMRLIAVFTMLFAFVGTSYAAKYKIGISVPSADHGWTAGLLWWANKAAADLKAK 60 Query: 53 DLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVD 112 + E +A G K + ++ L G VI +P ++ +A + + VD Sbjct: 61 EKDIEFFVVASSSGSKQVGDVEDLMIKGIDALVILPHNPATLQKVIEEAYDEGIYTVVVD 120 Query: 113 DQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTAR 172 + + +G Q L KEM +G V+ I ++ + Sbjct: 121 RELA-----HPAQNVFIAGDNAGLGRVGAQWLAKEMSGKGN------VVVIEGLQIPINK 169 Query: 173 RRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTV 232 +R D + AG+P +I A + L +HP++ + +D + Sbjct: 170 QRVDAFNDVI--AGYPNIKILDSQPGDWSTQKALSVMENFLQKHPKID--AVWCQDDDML 225 Query: 233 LGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYN 292 G ++A E G +G G + E+ ++ ++ SP + + Sbjct: 226 KGVLKAIEESGRTDIK-TVLGGAGSKDIIEMIQSGNKMVRATVTYSP-SMIASGIALAVH 283 Query: 293 WVAKDV----EPPKFTEVTDVVLITRDNFKEELEKKG 325 V + + L+T++N + K Sbjct: 284 GVKHEKLGYLYHEPSRVILGADLVTKENAADYYFKDA 320 >UniRef50_B1Y299 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1Y299_LEPCP Length = 318 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 63/329 (19%), Positives = 114/329 (34%), Gaps = 22/329 (6%) Query: 1 MHKFTKALAAI-GLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG-FEV 58 M K+ L A L + S L + F+ K ++ ++ ++A ++ G ++ Sbjct: 1 MKKYLTFLFACWVLLSSGSAWPADNKLNIVFIPKSSDQMFWDLMRNGVERAMQEEGQIDL 60 Query: 59 IKIA---VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQF 115 D + + + +G VI D V +A +KV+ VD Sbjct: 61 TWRGPAYNDDTDSQIRILQYYTRAGVDAIVITPTDRSRLVGPVEQAVRMGIKVVVVDSAL 120 Query: 116 VNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRT 175 + V G+ ++L + M +RG V+ T + R Sbjct: 121 DGSGHLQ-----FVTTDNHASGQLAARQLAELMGQRG-----RVVLLRTVAGSASTDDRA 170 Query: 176 TGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG 235 G +D L A P I A +A+++L + + I +N+S G Sbjct: 171 RGFIDYLSANA-PAISIVADVYGGGSAGKARHSASALLAKSADFD--AIFAVNESATDGM 227 Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295 +RA G IG + + E + + G ++ PD GY + + + + Sbjct: 228 LRALREAGLAGRK-RFIGFDSTPFLLEGLEKKE--IDGLIVQDPDRMGYLAIKAVVAALR 284 Query: 296 KDVEPPKFTEVTDVVLITRDNFKEELEKK 324 T L+TR NF+ KK Sbjct: 285 NRPIKESVI-HTGTTLVTRANFRRPEIKK 312 >UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinobacteria (class) RepID=Q1ARR7_RUBXD Length = 343 Score = 211 bits (538), Expect = 3e-53, Method: Composition-based stats. Identities = 59/304 (19%), Positives = 107/304 (35%), Gaps = 22/304 (7%) Query: 28 LGFLVKQPEEPWFQTEWKFADKAGK--DLGFEVIKIA---VPDGEKTLNAIDSLAASGAK 82 L + K +++T + A A K + +V D +N + + G Sbjct: 45 LAVVPKAVGFDFWETVRQGAVCAAKRAEGEVDVQWDGVAQETDVTGQVNLLQNFITQGVD 104 Query: 83 GFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQ 142 G V D K+ + +A + V+ +D + VP+ ER + Sbjct: 105 GLVYAATDAKVLHDVTQQALDQGITVVNIDSGTDPQP----ENVPVFATDNVAAAERATE 160 Query: 143 ELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDI 202 L +++ + G V T RT G + LK P+ ++ + ++ Sbjct: 161 YLVEQLGEDGGKVAF----IPFQPGTATNDTRTEGFKNVLKEN--PQVKLVAEQSSESNY 214 Query: 203 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSE 262 A +L HP++ I N+ VLG A G KA +II +G + A E Sbjct: 215 NRALQVTEDILTAHPDLD--AIYAANEPGVLGAAEAVRSAG-KAGEIIIVGWDT--APDE 269 Query: 263 LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELE 322 L + + +P GY + + T +L+TR+N + Sbjct: 270 LKAVREGVVSALIAQNPFRMGYDGVNAAVKMIRTGEQVEGGD--TGAILVTRENIDDPEV 327 Query: 323 KKGL 326 ++ L Sbjct: 328 QRVL 331 >UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Halothermothrix orenii H 168 RepID=B8CWP1_HALOH Length = 320 Score = 211 bits (537), Expect = 3e-53, Method: Composition-based stats. Identities = 56/312 (17%), Positives = 111/312 (35%), Gaps = 22/312 (7%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTLNAID 74 +E ++ K + ++ T A+ A K+LG E++ D K +N I+ Sbjct: 23 GDVQASEKYQILVSPKGLSQSYWLTVKAGAEAAAKELGAEIVWRGPAQETDVAKQVNVIN 82 Query: 75 SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134 V+ D + +A + VI +D + + Sbjct: 83 DFVNKKIDAIVVAATDANALIPPLKRAHEAGIPVITIDSGINADFP-----ISHIATNNK 137 Query: 135 KIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194 + ++ + L + K+G V T+ R G + + + + + Sbjct: 138 EAAKKAAEVLANIIGKKGEVACIPFVA-----GAATSIARENGFKEGI--SNYKNIDLVA 190 Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254 V +D A ++L HP +K I N++ +G RA + +G A D+I +G Sbjct: 191 VQYSQSDYATAMKVTENILTAHPNLKG--IFAANEAGAVGAARALKARGKTA-DVILVGF 247 Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314 + A +E+ + ++ P + GY+ + + + T VV+ T Sbjct: 248 DA--AQTEIDAMKEGIIDALIVQRPYMMGYEGVKNAVAALEGEEVEK--LIDTGVVVATP 303 Query: 315 DNFKEELEKKGL 326 DN + K L Sbjct: 304 DNMNDPEVYKVL 315 >UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LH93_9FIRM Length = 362 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 53/321 (16%), Positives = 108/321 (33%), Gaps = 22/321 (6%) Query: 15 AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK---IAVPDGEKTLN 71 A + + + + +VK P+ KA +D+GFE + E + Sbjct: 48 AATTDVKVNGDYTIAMIVKNNTNPFMNGVLNGFSKAAEDIGFEAMLLSPQTADSNEDQVR 107 Query: 72 AIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMM 131 ++ + SG I D + KA + V+ + Sbjct: 108 LVEDMIQSGVDAICIHPVDSNGIVPALEKAWDAGIPVL-----VQGTQANTDKIYGWYGT 162 Query: 132 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ 191 + L +++ +G V + A + + +P+ Sbjct: 163 KYADEATLIAEYLAEKLDYKGN-----VVYITGPQQAQNAIDEINATHAVFEK--YPDLN 215 Query: 192 IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA-DII 250 + + + + + +++ ++ E ++G ND +G + A E G+K + Sbjct: 216 LIEEQPGNFNRATSMSVMENLIQKYSEDDIDWVIGGNDECAMGAIAAMENAGWKLGFEDG 275 Query: 251 GIGINGVDAVSELSKA-QATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDV 309 GIG++G+D + S A Q S+ P P GY + L N++ P++ D Sbjct: 276 GIGVSGIDCNKDASYAMQEGTLTVSVNPDPVSLGYIGAAFLVNYLNDGDLFPEYVAWPDF 335 Query: 310 -----VLITRDNFKEELEKKG 325 V+I N +E Sbjct: 336 QTADDVVIDASNIDNYIENLA 356 >UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea DSM 7271 RepID=C7M5H3_CAPOD Length = 934 Score = 211 bits (537), Expect = 4e-53, Method: Composition-based stats. Identities = 52/320 (16%), Positives = 101/320 (31%), Gaps = 26/320 (8%) Query: 2 HKFTKALAAIGLAAVMSQSAMAEN-LKLGFLVKQPEEPWFQTEWKFADKAGK--DLGFEV 58 K+ L A ++ +G E+ W QT + + E+ Sbjct: 13 RKYHILFLYFALFACLACQRERNPRYVIGVSQCS-EDLWRQTMNEELKREVALYQANTEL 71 Query: 59 IKIA-VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117 + + D K + I+ V+ + + + ++ KA + VI VD + Sbjct: 72 LIRSVKDDTPKQIADIEWFIEQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRKIAT 131 Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177 V +IG+ G ++ +G + + R G Sbjct: 132 ES-----YTAYVGANNYQIGKEAGHYAIGILKGKGNIAE-----VRGTKGSTSDAERHKG 181 Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237 +DAL A PE +I + A + QHP + L+ MND G Sbjct: 182 FVDALNNA--PEVRIVAETWGNFLKADAKVQMQQLFQQHPNID--LVFAMNDPMAAGTHE 237 Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 A K IG++ + +S + S + G K ++ + Sbjct: 238 AAMQFNGKIP--FIIGVDALQQ-EGISNIENNVQDASFIYP--TGGEKVIDLAMKILH-- 290 Query: 298 VEPPKFTEVTDVVLITRDNF 317 +P + + + ++ + N Sbjct: 291 KQPFERENILNTAVVDKSNV 310 >UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-binding protein n=3 Tax=Rhizobium etli RepID=Q2KAX1_RHIEC Length = 307 Score = 210 bits (536), Expect = 4e-53, Method: Composition-based stats. Identities = 62/328 (18%), Positives = 102/328 (31%), Gaps = 26/328 (7%) Query: 1 MH---KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGK-DLGF 56 M K A A + A+ +G+ + + +A K D Sbjct: 1 MKAISKLALACAISLATISTGSAFAADKFVVGYANMADTDVFVMARKNAFIEASKSDPAV 60 Query: 57 EVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQF 115 EV A D K L+ ID+ A V+ D + V KA + VIA+ Q Sbjct: 61 EVNFSDANNDVSKQLDQIDNFIAQKVNAIVVVPVDYQGIVPGVEKANQAGIPVIALGIQS 120 Query: 116 VNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRT 175 K V G QG+ + + + K + L + R Sbjct: 121 AGGKY------TFVGSKNIDAGRLQGEYMKEHLPKGAK-----ILYLEGTPGLSHTQERK 169 Query: 176 TGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG 235 G DAL G + + + D + P K IV ND LG Sbjct: 170 KGFEDAL---GRSDVTTLASLSANYDRAEGMKVTEDWIQSFP--KFDAIVAANDQMALGA 224 Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295 + A +G ++ G++G KA ++ + E++ Sbjct: 225 LEALQGADRLKG-VMISGVDGTADALNAIKA--GTMSQTIFQDAAGQAKAAFEVVEGLKK 281 Query: 296 KDVEPPKFTEVTDVVLITRDNFKEELEK 323 + P + + IT+DN + +K Sbjct: 282 GEDAPAEK--LVPFASITKDNVGQYAKK 307 >UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding protein n=4 Tax=Clostridium difficile RepID=C9XJ75_CLODC Length = 320 Score = 210 bits (536), Expect = 4e-53, Method: Composition-based stats. Identities = 52/303 (17%), Positives = 105/303 (34%), Gaps = 20/303 (6%) Query: 19 QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLA 77 + ++L +G + +F + + K+LG +VI D K +AI+ Sbjct: 35 GGSDKKDLTIGVSTITLQHQFFIDIDEGIKEKAKELGVKVIVNDPDQDVAKQTSAIEDFI 94 Query: 78 ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137 G ++ D V A M V+ VD + V + G Sbjct: 95 QQNVDGMIVLGTDNSAIVPAVEGAFEK-MPVVTVDAVLNTE-----NITSYVGTVSYDAG 148 Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT 197 ++ G+ K + ++ +S + +T + +R G DALK + +I Sbjct: 149 KKLGEYTKKYIDEK--LGGKSEIAIVTDLKSQIQMQRIDGFKDALKGSA--NVKILNSQP 204 Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV 257 D + + +++ +P+V I +++VLG A E K D+ +G + Sbjct: 205 G-YDREESLNTVENLIQSNPDVDI--IYATAENSVLGAKAALESA--KNKDVKIVGFDLT 259 Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317 + S + P G + E + + + +L ++N Sbjct: 260 EEASSGI--TDGTILAMIQQQPKEMGRLAVEAVVKAIKGEKVEKNI--PVPALLYDKENI 315 Query: 318 KEE 320 K+ Sbjct: 316 KDF 318 >UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4G5I4_ABIDE Length = 342 Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 41/313 (13%), Positives = 99/313 (31%), Gaps = 26/313 (8%) Query: 16 VMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL--GFEV-IKIAVPDGEKTLNA 72 + S + + +L + P++ + K+ G +V + + + L Sbjct: 44 SGASSGNYKGKSIAYLTPSLDVPFWCYMKHGIEDQAKNTMPGVKVTVYDSKDNANTQLAN 103 Query: 73 IDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMA 132 + + G VI D A+++ A + V+ D + + V + Sbjct: 104 VQDAITNKVDGIVISPTDSASCIAVLSAAEEAGIPVVICDIGTDSGE-----YVSFISTD 158 Query: 133 ATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQI 192 + ++ G+ + ++ K + R G + +K + + Sbjct: 159 NSGGAKKLGEYVADKLNKGDEIAQ-----IALNQARKNGVLRKEGFEEGIKE----KLKE 209 Query: 193 YQ-VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 251 + + ++ +P +K I ++ +G V A + Sbjct: 210 VDFRQMEKVNRDEGVRYTQDLITSYPNLKC--IFCHSEDPSMGAVTALKE--INNDKCKI 265 Query: 252 IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311 +G + V E K + + P G + + L + P+ D +L Sbjct: 266 VGFDCSPEVVEAIK--SGDILATAAQQPVFMGRTAVDCLKTHLDGGT--PEKEISVDTLL 321 Query: 312 ITRDNFKEELEKK 324 +T+DN + +K Sbjct: 322 VTQDNINDVYDKL 334 >UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ERG9_9FIRM Length = 355 Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 53/314 (16%), Positives = 108/314 (34%), Gaps = 17/314 (5%) Query: 15 AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAI 73 A S+ + LK+GF W E + K + G+E+I A + EK + + Sbjct: 57 AKASEDGGEKKLKIGFSESTYSGAWRVAEVEDVTKYAEMNGYELIMTNADSNIEKQIGDV 116 Query: 74 DSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAA 133 + L A VI D + + + VI +D Q+++ K D + + Sbjct: 117 EDLIAQKCDLIVIVPVDANAVAPAFEACKSAGIPVIDMDTQYLDGK-WKEDFITTIRSDQ 175 Query: 134 TKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIY 193 + G+ + + + + + A+ R+ G + + A ++ Sbjct: 176 YQQGQGCAEWTVGHVGDK----DTTVLEITGNPGQSDAQNRSRGFNEYV--ADHSNIKVI 229 Query: 194 QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA-ADIIGI 252 A + ++ K +I +D LG + + G K D+ + Sbjct: 230 -QQNGEWSRATAQEVVQNVAQSGQ--KFDVIYCHSDEMALGALLGLKQAGLKPNEDVWIV 286 Query: 253 GINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLI 312 ++G + KA G+++ G + + + A D ++ I Sbjct: 287 AVDGQKEALDAIKADE---IGAIITCTPKGGDVLFDCINKYFAGDELEEEYFVHQST--I 341 Query: 313 TRDNFKEELEKKGL 326 T +N E E +G Sbjct: 342 TTENVDELYEVEGF 355 >UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport protein n=12 Tax=Proteobacteria RepID=A1SYD2_PSYIN Length = 312 Score = 210 bits (536), Expect = 5e-53, Method: Composition-based stats. Identities = 46/325 (14%), Positives = 99/325 (30%), Gaps = 23/325 (7%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQ-----PEEPWFQTEWKFADKAGKDLG 55 M K A+ + + S + A++ +G + + K G Sbjct: 1 MQKKL-AITGLAFSICFSTFSFAKDYVIGVTQNNVGVDSYQTTYDIALKDTMTKYPNVEG 59 Query: 56 FEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQF 115 + A + + + + L ++ + + + IV KA+ + VI + Sbjct: 60 I--VLDAGGNVARQIAQVQDLIQQEVDAIILWPTNGQALTPIVRKAKQMGIPVIITNSNI 117 Query: 116 VNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRT 175 ++ G+ + + + + +G V TA R Sbjct: 118 --SEKGQEFITAFSGPNTITQGQYAAELMCEGLNGKG-----QVVQITGQPGYQTAINRQ 170 Query: 176 TGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG 235 G D+L AA P I + + + + + K + +D+ +G Sbjct: 171 KGFEDSL-AADCPGVSIIDSQPGDWNREKSQRVMENFITRF-GTKIDGVYAADDNMGIGA 228 Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295 + A + K +I +G + + +YGS++ SP + + + Sbjct: 229 LNAIKEADLK--NIKIVG--ATNFAVGYDAIKEGSYYGSVVQSPVSDAIAALAITMKILN 284 Query: 296 KDVEPPKFTEVTDVVLITRDNFKEE 320 D T +T N E Sbjct: 285 GDKVEKDNYFDTPK--VTLANIDEF 307 >UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional regulator n=60 Tax=Proteobacteria RepID=B2ILF2_BEII9 Length = 333 Score = 210 bits (535), Expect = 5e-53, Method: Composition-based stats. Identities = 55/319 (17%), Positives = 109/319 (34%), Gaps = 24/319 (7%) Query: 7 ALAAIGLAAVMSQSAMAENLK-LGFLVKQPEEPWFQTEWKFADKAGKDLGFEV---IKIA 62 L + + +A A++LK +G V +F + A+ K++ +V + Sbjct: 27 LLMGSAILVLAMGAAGAKDLKSVGVSVGSLGNLYFVALSQSAEAKAKEINPDVKVITVDS 86 Query: 63 VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122 D K N ID+ ASG ++ DPK + + +A+ + V+A D V A Sbjct: 87 NYDLNKQFNQIDNFIASGVDLILLAAADPKAIAPAIKRAQNAGIVVMATDVAAVGAD--- 143 Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182 V + GE Q + ++ G ++ ++ + R +G +L Sbjct: 144 ----ATVQTNNVQAGEIACQYIVDKLGAAGGQ-----IIIQNGPQISSIIDRVSGCRKSL 194 Query: 183 KAAGFPEKQIY-QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241 P+ I L +H ++ + + D G A + Sbjct: 195 ANN--PKITILSDDQNGKCSRDEGMKIMQGHLTRHRKID--AVFTVCDPQATGSDLAAQQ 250 Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301 G + ++G + + K T S P ++ ++ Y + P Sbjct: 251 FGRN--EFFIASVDGAPDIEKAFKGGNTRIQASASQDPYGMAQQAVQIGYEIMNGKK-PD 307 Query: 302 KFTEVTDVVLITRDNFKEE 320 + L+T+DN + Sbjct: 308 NPMILMPSTLLTKDNVADY 326 >UniRef50_B9L479 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermomicrobium roseum DSM 5159 RepID=B9L479_THERP Length = 357 Score = 210 bits (535), Expect = 6e-53, Method: Composition-based stats. Identities = 48/305 (15%), Positives = 105/305 (34%), Gaps = 21/305 (6%) Query: 19 QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA--VPDGEKTLNAIDSL 76 A + + + K P+F+ K ++ K+LG +A D + I+ L Sbjct: 69 TVAPGTKITIAMVPK-LVHPFFEDCRKGGEQKAKELGVTFEYVAPQQADPALQVKIIEDL 127 Query: 77 AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136 I +PK ++A+ + ++ D N++ V + Sbjct: 128 IRKKVHAISISPNEPKSVEPVIAEGMKQGILMMTFDADSPNSQ-----RVMYIGTDNKAA 182 Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196 G+ G+ + K + RG + +R G + + P Q+ V Sbjct: 183 GKTMGETMAKLLNGRGKVG-----IITGGLGALNLNQRIEGFKEGVG----PNIQVVDVQ 233 Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLG-GVRATEGQGFKAADIIGIGIN 255 +D+ + +ML HP++ V L +++ E Q ++ + + Sbjct: 234 ATDDDLQKGLSVSEAMLRAHPDLNGIACVSATGGPTLAQVLKSPEFQDR-IGKLVIVAFD 292 Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315 ++ Q +++ P G + + Y+ + +PP T V ++T++ Sbjct: 293 DLEETKRAI--QEGIIAATMVQRPVQMGVLTVQWAYDILTGKAKPPFKNIDTGVTVVTKE 350 Query: 316 NFKEE 320 N Sbjct: 351 NLNSY 355 >UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-binding protein n=82 Tax=Proteobacteria RepID=A3N967_BURP6 Length = 320 Score = 210 bits (534), Expect = 8e-53, Method: Composition-based stats. Identities = 59/305 (19%), Positives = 115/305 (37%), Gaps = 21/305 (6%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG--FEVIKIA---VPDGEKTLNA 72 +++ A K+ ++K +F T A + K F+++ D + Sbjct: 28 ARAETAHKPKVALVMKSLANEFFLTMENGAKEYQKHNASQFDLVTNGIKDETDTASQIRI 87 Query: 73 IDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD-TVPLVMM 131 ++ + S V+ D K +V KA + V+ +D++ K VP V Sbjct: 88 VEQMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIVVNIDNRLDPDVLKSKGLNVPFVGP 147 Query: 132 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ 191 K G L K ++ ++ + A++RT G DA+KAAG + Sbjct: 148 DNRKGARMVGDYLAKRLK-----AGDAVGIVEGVPTTTNAQQRTAGFQDAMKAAG---AK 199 Query: 192 IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 251 + V + +I A +ML ++P +K ++ ND+ +G V A G + Sbjct: 200 VVSVQSGEWEIDKGNAVAAAMLNEYPNLK--ALLCGNDNMAIGAVSAVRAAGR-QGKVYV 256 Query: 252 IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEV--TDV 309 +G + ++A+ + K + + +A+ + T V T V Sbjct: 257 VGYDNINAIKPMLK--DGRVLATADQYAAKQAVFGIDTALKALAEHRKQADMTGVVATPV 314 Query: 310 VLITR 314 L+T+ Sbjct: 315 DLVTK 319 >UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3_BACV8 Length = 908 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 50/320 (15%), Positives = 109/320 (34%), Gaps = 23/320 (7%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEW-KFADKAGKDLGFEV- 58 M K L + + S S +G ++ W + +A G EV Sbjct: 1 MKKHLLFLILCLMGILTSCSQKHTRYYIGVSQCS-DDEWRHKMNHEIVREALFYDGVEVE 59 Query: 59 IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 I+ A + + I+ ++ + + +V KA G + V+ +D + ++ Sbjct: 60 IRTAKDNSRNQIEDINYFIDRKVDLLIVAPNEAAAVTPVVEKAYGLGIPVVVIDRKILSD 119 Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 + V +IG+ GQ + + +G + A R G Sbjct: 120 R-----YTAFVGADNCEIGKDVGQYIVNRLGGKGK-----ILEITGLEGSTPAMERHRGL 169 Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238 DALKA P +I + A + +S+L + + L+ ND +G + Sbjct: 170 ADALKAE--PGIEITASVDGAWLQSVAGEKMDSILQDNKGIN--LVFAQNDRMAVGAYLS 225 Query: 239 TEGQGFKAADIIGIGINGVDA-VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 + + +++ +GI+ + + + + + G K ++ + + + Sbjct: 226 ARQRQLE-KEMLFVGIDALPGKGYGVEQVLEGVLDATFIYP--TGGDKVMQVAMDIL--E 280 Query: 298 VEPPKFTEVTDVVLITRDNF 317 P + L+ + N Sbjct: 281 KRPYERDTKLSTALVDKTNA 300 >UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-binding protein n=9 Tax=Actinomycetales RepID=B5GEU2_9ACTO Length = 367 Score = 209 bits (533), Expect = 1e-52, Method: Composition-based stats. Identities = 49/321 (15%), Positives = 102/321 (31%), Gaps = 22/321 (6%) Query: 10 AIGLAAVMSQSAMAENL-----KLGFLVKQ-PEEPWFQTEWKFADKAGKDLGFEVIKIAV 63 A G + A+ +GF + P+ E + G +++ + Sbjct: 60 AAGGKGCTLDAYGAKKTDLASATVGFSQSEKEANPFRIAETASLKDEARKRGVKLLAVNA 119 Query: 64 PDG-EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122 K ++ + L A GA VI + ++ A + ++ +D + G Sbjct: 120 QSQFSKQISDVQDLIAKGADLLVIAPLNSDGWEPVLRAASAKKIPIVTIDRKINA--GPC 177 Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182 D V + + G R ++ + +G + + A + RT G D + Sbjct: 178 KDYVSFIGSDFVEQGRRAADKMIEATGGKGEVA-----ILLGAAGNNVTTERTKGFKDRV 232 Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242 P ++ T ++ P +K I ND LG V A + Sbjct: 233 AEKA-PGLKVVFEQTGDFAREKGQSVTEQLIQSKPGIKG--IYAENDEMGLGAVNALKSA 289 Query: 243 GFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302 G K + + ++G + + + G + +P G + + L + + Sbjct: 290 GKKPGAVKIVTVDGTR--NAVKQIVDGWISGVIESNPR-FGPLAFQTLDTFTKGEEVQQD 346 Query: 303 FTEVTDVVLITRDNFKEELEK 323 + N + +L K Sbjct: 347 IVIKDSAY--DKTNAEADLGK 365 >UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella oris F0302 RepID=D1QRT0_9BACT Length = 522 Score = 209 bits (532), Expect = 1e-52, Method: Composition-based stats. Identities = 42/322 (13%), Positives = 94/322 (29%), Gaps = 28/322 (8%) Query: 1 MHKFTKALAAI--GLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAG-KDLGFE 57 M+K + + L S ++ +G + W + A + G Sbjct: 1 MNKISSFILTFMGCLMICSCNSRNSKQYVIGVSQCSEDI-WRDKLNQELQTATYMEDGVT 59 Query: 58 VIKIAVPDGEK-TLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116 + + D +K + I+ G +I + +V KA + VI D + Sbjct: 60 MRFASADDNDKRQIQQIEQFIKDGVDLLIISPNQAHAITPVVDKAVEKGIPVILFDRKAD 119 Query: 117 NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTT 176 + ++G + G + +++ G + + A R Sbjct: 120 G------KYTAFIGADNVEVGRQMGDYVARQLDYHGN-----VIELMGLKGSSPAIERHR 168 Query: 177 GSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPE---VKHWLIVGMNDSTVL 233 G ++ + + +P ++ + A + +H + ND + Sbjct: 169 GFIERI--SRYPGIKLVESLQGDWTKASGRRAIQAFSQRHGTASCATIACVFAQNDRMAM 226 Query: 234 GGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNW 293 G G + G++ + K A + P G ++ N Sbjct: 227 GA----REAGLLPKSTLFCGVDALPGEQGGMKLVADSVLSASYIYPTR-GDLVMKLAMNI 281 Query: 294 VAKDVEPPKFTEVTDVVLITRD 315 + P + + L+T D Sbjct: 282 LNHR--PYQKENLLQSALVTPD 301 >UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alphaproteobacteria RepID=A6UE72_SINMW Length = 310 Score = 208 bits (531), Expect = 2e-52, Method: Composition-based stats. Identities = 57/324 (17%), Positives = 104/324 (32%), Gaps = 19/324 (5%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 M T +AA + + ++ AE K+G V + +F +K ++ G EV+ Sbjct: 1 MKLSTLLVAATTASVLALPASAAEVKKIGLAVPNLQADFFNQIKLGVEKHAREKGLEVVV 60 Query: 61 -IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 A D ++ + L F+ + AR + VI VD A Sbjct: 61 VDAKNDTNTQVSQVQDLMIQDIDAFIYIPAGAAAAAVPTRLAREAGIPVINVDRVPEGAP 120 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 G + + + + + ++ G + R TG Sbjct: 121 G-----DTFIAGESVESAYAVCKFIIEKAGGSGKMA-----IIHGQKGTTPEVDRFTGCK 170 Query: 180 DALKAAGFPEKQIYQVPTKS-NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238 A+ ++ + F A +ML +P++ I G D +G +A Sbjct: 171 RAIDEN--KGVELIDQQWSNMWSADEGFSIAQNMLQANPDITI--IFGQADGLAMGAAKA 226 Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 + +I G +G + E F + S G + E A + Sbjct: 227 VDVANLS-DKVIIGGYDGDVSALEYLARCKGPFIATATQSTQKMGVLAVESALAVAAGEK 285 Query: 299 EPPKFTEVTDVVLITRDNFKEELE 322 + T + VL T DN E ++ Sbjct: 286 VEERQTP--NAVLTTCDNAPEFVK 307 >UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gammaproteobacteria RepID=B0URZ9_HAES2 Length = 311 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 54/318 (16%), Positives = 110/318 (34%), Gaps = 22/318 (6%) Query: 1 MHKF--TKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV 58 M +F K+ AI AE ++K P++ + + K LG +V Sbjct: 1 MKRFKTLKSCLAILGLVCSVSVYSAE---YAVILKTLSNPFWVAMKEGIENEAKALGVDV 57 Query: 59 IKIA---VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQF 115 A D + L + L KG P AKA + ++ +D++ Sbjct: 58 DIFASPSEGDYQSQLQLFEDLINKNYKGIAFAPLSPANLVMPAAKAYRKGIYLVNLDEKI 117 Query: 116 V--NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 173 N + + + +G + Q + ++ G +V + + Sbjct: 118 DIKNLQKAKGNVEAFITTDNVAVGGKAAQFIVDKLGSEGGEVA----IIEGKAGNASGEA 173 Query: 174 RTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVL 233 R G+ + + ++ D A D A ++L ++P +K + + ND+ + Sbjct: 174 RRRGAREVFVKSSS--IKLVASQPADWDRIKALDVATNVLSRNPNLKAFYV--ANDTMAM 229 Query: 234 GGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNW 293 G +A G K I+ +G +GV ++ + ++ P + G K ++L + Sbjct: 230 GVAQAVINAG-KQGKILVVGTDGVPEARKMVSER--KLTATIAQDPAMIGAKGLKLLVDA 286 Query: 294 VA-KDVEPPKFTEVTDVV 310 P + V Sbjct: 287 ARAGKQIPVDVEPKIETV 304 >UniRef50_D2QME7 Two component transcriptional regulator, AraC family n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QME7_9SPHI Length = 940 Score = 208 bits (530), Expect = 2e-52, Method: Composition-based stats. Identities = 43/313 (13%), Positives = 103/313 (32%), Gaps = 21/313 (6%) Query: 13 LAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGK-DLGFEVIK-IAVPDGEKTL 70 +A S + + ++GF + W +T + + ++ A + + Sbjct: 38 MAGCQS-ATKTKTYRIGFSQCTGGDEWRKTMLHDMKRELTFHPNYTLLYEDAENSTTRQI 96 Query: 71 NAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVM 130 + I +L G ++ + + ++ + VI +D + + Sbjct: 97 SQIQALIDQGIDLLIVSPNEVAPFAKVIEDVFKRGIPVILLDRKIETES-----YNAYIG 151 Query: 131 MAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEK 190 +IG G + ++ +G V A+ R G ++ L+ +P Sbjct: 152 GDNVEIGRLAGVFIGNHLKGKG-----RIVEIWGLPSSSPAQERHRGLLEELRK--YPGI 204 Query: 191 QIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADII 250 Q+ + + + L +V L+ ND LG + +G + + Sbjct: 205 QVVKELNGQWERDTVGRVVAAELNTLKDVD--LVFAHNDVMALGAYAVCKQKGIE-KKLD 261 Query: 251 GIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVV 310 +GI+ + + +A G + P G ++ E +A + +V + + Sbjct: 262 FVGIDALPGPNAGMQAITDGILKASFLYPTG-GEEAIETATRILAGKSVKRE--QVLNSI 318 Query: 311 LITRDNFKEELEK 323 I N + + Sbjct: 319 QIDGSNVRALKAQ 331 >UniRef50_UPI0001B51147 putative ABC transporter substrate-binding protein n=1 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B51147 Length = 354 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 53/315 (16%), Positives = 104/315 (33%), Gaps = 22/315 (6%) Query: 15 AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE--VIKIAVPDGEKTLNA 72 A + + + +GF Q + W + A + K+ V D + + Sbjct: 49 AGAADKKRGKKVTIGFAGPQADHGWLNAINEQAKRRAKEYQDVSLVSTEGSNDTAQQIGQ 108 Query: 73 IDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMA 132 I++L VI D K + + KA + V+ +D F + + + Sbjct: 109 IETLINKKVDVLVILPADGKALTQVGLKAMESGIPVVNLDRVFASPQA----YRCWIGGD 164 Query: 133 ATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQI 192 +G G+ + ++++ + V + L+ R+RT G DALK +P + Sbjct: 165 NYGMGLNAGRYIGEQLKGKKN---AKVVELAGLDNLELTRQRTAGFDDALK--NYPNIKK 219 Query: 193 YQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGI 252 + +L H + +D +G RA + G D + + Sbjct: 220 VGRQAAEFTVESGQSKMAQLLQAHSGFD--ALWNHDDDQGVGAERAIQQAGR--DDFLMV 275 Query: 253 GINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL- 311 G G + KA T ++L P + ++ + L Sbjct: 276 GGAGAKRAMDAIKADNTVLKATVLYPP-TMAASAIDLARALGQGNGVGGLAELEIPASLT 334 Query: 312 -----ITRDNFKEEL 321 +T++N E L Sbjct: 335 LYSAVVTKENVDEYL 349 >UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Actinomycetales RepID=D2PNL9_9ACTO Length = 335 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 51/310 (16%), Positives = 103/310 (33%), Gaps = 18/310 (5%) Query: 21 AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEVIK-IAVPDGEKTLNAIDSLAA 78 +G EP+ Q A ++ FEV A D K + +++ Sbjct: 42 GADGKYVIGMSQANVAEPYRQRMDDDIKAAAAEVPQFEVKFADAAQDNAKQVADVENYIT 101 Query: 79 SGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGE 138 +I + K +A+V KA + V+ +D + + +IG Sbjct: 102 QQIDLLIISPNEAKPLTAVVKKAYDQGIPVLVLDRKVEGD-----AYTGFIGGDNVQIGT 156 Query: 139 RQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTK 198 G+ + +++ G + V R G +KA P+ ++ + Sbjct: 157 EAGKYVAEKVLPNGG----NVVEIKGLAGATPQAERNQGFATGIKAN--PKVKVVATASG 210 Query: 199 SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVD 258 +++L +P++ ++ ND G A + G + ++ IGI+ + Sbjct: 211 DWLREKGQAQMDALLKANPKID--VVYAHNDPMAEGAYLAAKAVGRE-KEMKFIGIDALP 267 Query: 259 AVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318 S KA G + P G ++ + K T+ LI + N Sbjct: 268 IPSGGIKAVEQGRLTATFTYPTN-GKEAIAAAKKLLVDCGTIEK-TQTLPTRLIDKTNAA 325 Query: 319 EELEKKGLGG 328 + ++ G Sbjct: 326 QIYAQENPTG 335 >UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding protein) n=1 Tax=Bacillus halodurans RepID=Q9K631_BACHD Length = 327 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 46/334 (13%), Positives = 93/334 (27%), Gaps = 34/334 (10%) Query: 4 FTKALAAIGLAAVMSQ------------SAMAENLKLGFLVKQPEEPWFQTEWKFADK-A 50 + L S + + +GF + + Sbjct: 12 LIIYCLSFLLVGCASDSDEQMGTESVNKAGDDGKMVIGFAHPDFNDMFLGFLLAGVQAYE 71 Query: 51 GKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVI 109 + EV+ A D + + ++ L A G + D IV +A+ + V+ Sbjct: 72 AEQTNVEVVYVDAENDSDGQIAQVEDLIAQGVDAIMAIPVDLIATEFIVDRAQQAGVPVV 131 Query: 110 AVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELD 169 ++ V + V + + G Q +E+ ++ +G + Sbjct: 132 LINRDSVERE------DAYVGSDSLQAGTIQMEEVAAVLKGKGKIA-----IMNGQMGHT 180 Query: 170 TARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMND 229 RT G+ + +P ++ T + S + +V ND Sbjct: 181 AQINRTLGNKQVVDQ--YPGMEVVIEGTGGWSREKGKELMESWIESGQTFD--AVVANND 236 Query: 230 STVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEM 289 +G + A E G +++ GI+G + S+ G E Sbjct: 237 EMAIGAIMAAEEAGI-VDELVFAGIDGTPDALDYMS--KGKLTISVFQDAKGQGQTGLEQ 293 Query: 290 LYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEK 323 + IT+ N E +K Sbjct: 294 AIKLAKGESAEK--MTNIPYETITKRNVDEYKKK 325 >UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding protein n=2 Tax=Selenomonas RepID=C9LWW5_9FIRM Length = 347 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 45/297 (15%), Positives = 99/297 (33%), Gaps = 20/297 (6%) Query: 27 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFV 85 K+ + ++ + + K G +V A D ++ ++ ++ A V Sbjct: 70 KVIYANHNDDDAFAMQLKNTFAEKAKSAGLDVEFLDAKGDSNLQIDQLNEAISNKAAAIV 129 Query: 86 ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145 + D V KAR + V+ ++ + K + G QG+ + Sbjct: 130 LLAMDGTSIVPTVEKAREAGIPVVIMNRDVNDPKVIGSL------SDDREAGRMQGEFMA 183 Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205 + V + + L A +R G +A P+ ++ S Sbjct: 184 SHLP-----PNAKVVYLMGESSLSVAVKRWEGFKEACLDKR-PDVKLLASVDGSWSKAEG 237 Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSK 265 A L PE+ +V ND LG ++A + + G++ A L+ Sbjct: 238 MKAMTLWLSFFPEING--VVAANDEMALGAIQALKAANRLNG-CLVTGVDATPA--GLAA 292 Query: 266 AQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELE 322 +A ++ + + ++ +++ P + ITR+N + ++ Sbjct: 293 VEAGELSQTVKQDAEGQAAGAVTLVQGFLSGKA--PTESLDIPFTSITRENVAQFVK 347 >UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CDT0_9FIRM Length = 326 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 43/300 (14%), Positives = 110/300 (36%), Gaps = 20/300 (6%) Query: 22 MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLAASG 80 E K+G ++ + + K+ G ++I + +K I L Sbjct: 40 STEPRKIGATYMTYNNTFYSVINEEISRILKEHGDQLIALDSAMSLKKQKEQIHYLIEQQ 99 Query: 81 AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140 VI D + + +A + VI VD + + K + ++ G + Sbjct: 100 VDAIVIAPVDYEGLEDSLKEAYRNRIPVIVVDTEVKHNK----NITYSIVSDNYDAGVQC 155 Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSN 200 +++ +++ + ++ + + + R G D +++ ++ + Sbjct: 156 AKDMMRKL-------DHANIVLLQHSTTRSGYLRIKGFEDTIQSNE--NYKVVKRMECDG 206 Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260 + A S + + ++ +++ +ND + +G + A GI+G Sbjct: 207 QLEVAMPKMESFIEE--GIEFDVVMCLNDPSAMGAMAALSSNNILKDK-YVYGIDGTPEA 263 Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320 E+ ++ SP G K+ E++Y +++ E++ V +IT++N ++ Sbjct: 264 KEM--VVEGKMAATVAQSPKTFGKKAGEVIYKLFSQETI-KNKNEMSPVQIITKENVQDY 320 >UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RSF4_9CLOT Length = 315 Score = 207 bits (528), Expect = 4e-52, Method: Composition-based stats. Identities = 52/321 (16%), Positives = 108/321 (33%), Gaps = 24/321 (7%) Query: 4 FTKALAAIGLAAVMSQSAMAENL---KLGFLVKQPEEPWFQTEWKFADKAGKDLG-FEVI 59 A A + L A G P+F + ++ + G + Sbjct: 9 ILTAGAMLLLGGCGHGDASGRQHEARLFGATYMTRNNPYFDVLNEGIEEVVEANGDILLT 68 Query: 60 KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 + + D EK I + G + + D + + R + +I VD + Sbjct: 69 RDPLQDQEKQNEQIQEMIDEGIQMLFLNPVDWEKVQPALDACREAGVGIINVDTVVKDRD 128 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 + ++ + G+ ++ K E+ ++ + + R G + Sbjct: 129 S----VISIIETDNYQAGQLCALDMMKR-------KDEAKIVILDNPIQTSITNREQGFL 177 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 D + Q+ + +I + +L + ++ +I+G ND T LG + A Sbjct: 178 DTIADNH--NYQVVYREAAAGEIEVSSHVMADLLRR--DISFDVILGGNDPTALGALAAL 233 Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 + + ++ GI+G + G+ SP G K++E Y ++ + Sbjct: 234 QQARREEG-VLIYGIDGSPDFKAILDV--GYVTGTSAQSPRSIGRKAAETAYRYLDGE-- 288 Query: 300 PPKFTEVTDVVLITRDNFKEE 320 P + +ITRDN E Sbjct: 289 PVEKYISMPSTMITRDNLHEF 309 >UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Proteobacteria RepID=A6WVL9_OCHA4 Length = 300 Score = 207 bits (527), Expect = 4e-52, Method: Composition-based stats. Identities = 63/315 (20%), Positives = 114/315 (36%), Gaps = 23/315 (7%) Query: 2 HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IK 60 ++ L + A+M+ +A AE +G + + P++ K + + + Sbjct: 4 KSLSRILFSGVALAMMAGAASAEG--IGASLLTQQHPFYIALADAMKKEAQAENVPLEVS 61 Query: 61 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120 IA D K L ++ G +I D K + + KA +KVI VD Sbjct: 62 IANQDLSKQLADVEDFITKGVDVIIISPVDSKGVRSAINKAEKAGIKVITVD-----VPA 116 Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180 +D V GE+ + + K + ++G V I + + R G Sbjct: 117 NNVDVTSFVGTDNFAGGEKAAELMAKTIGEKGN------VAVIDYPTVQSVVDRIEGFKK 170 Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240 + +P+ +I + P A AA ++L +P++ I G D L A + Sbjct: 171 GIAK--YPDIKIVAIQPG-ITRPEALSAAQNILQANPDIVG--IFGFGDDAALAAASAVK 225 Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300 + + IG +G++ K G + PD G + E + + P Sbjct: 226 SAKLE-NQVKVIGFDGMEEARNAVK-NDPVMVGVIAQYPDQMGKVAVETAAKVIKGEEVP 283 Query: 301 PKFTEVTDVVLITRD 315 K V V +T+D Sbjct: 284 AKQPIVPGV--VTKD 296 >UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EY05_9FIRM Length = 329 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 53/301 (17%), Positives = 112/301 (37%), Gaps = 20/301 (6%) Query: 21 AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAAS 79 + +G L P+F+ + + G + + + D + ++ Sbjct: 42 SEKSKRTIGALYMTMNNPYFEVINEEIKAVVESKGDVLETRDSGMDAKVQAKQVEKFIEE 101 Query: 80 GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139 +I D K + + KA+ + VIAVD N V+ + GE+ Sbjct: 102 KVDCILINAVDWKKIGSSLEKAKKAGIPVIAVDALIYN----RSFVDGTVVSNNYQAGEQ 157 Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199 ++L K +K+G ++ + +E +A R G + L+ AG+ + Sbjct: 158 CAKDLMKR-RKKGK------ILFLVQSENKSAIDRIKGFKETLEKAGWK-YENVGELECQ 209 Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259 + + +L + ++ +++ +ND + +G + A + + +D++ G +G Sbjct: 210 GQLELSQPLVEKVLNKTKDID--VVMALNDPSAMGAMAALDAEHM-LSDVLVYGADGSPE 266 Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 + + SP G K+ EMLY + + V LIT+DN + Sbjct: 267 AKTMIY--ENKMAATSAQSPRTTGKKTVEMLYKILDGKKTEK--QCIVPVSLITKDNIND 322 Query: 320 E 320 Sbjct: 323 Y 323 >UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Oribacterium sinus F0268 RepID=C2KYA7_9FIRM Length = 281 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 47/300 (15%), Positives = 97/300 (32%), Gaps = 23/300 (7%) Query: 28 LGFLVKQPEEPWFQTEWKFADKAGKDLGFE----VIKIAVPDGEKTLNAIDSLAASGAKG 83 + + + +T K ++LG+ I D ++ I+ G G Sbjct: 1 MALFMSHMTNEFVKTLSSSVQKEAEELGYTGDSFKIYDGKNDVATQVSQIEQAVTLGVDG 60 Query: 84 FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143 +I V A +KV+ ++ + + V G ++ Sbjct: 61 IIIEPVSTDGIVKAVKDAEKVGVKVVILNQRISDQNAA----DTFVGADNESTGAALMKK 116 Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203 + +++ +G V + D R+ G L A +P+ ++ + D Sbjct: 117 VMEDLDGKGN-----IVELLGPMGSDGQVGRSKGFDSVL--AEYPDVKVIASDSADWDTA 169 Query: 204 GAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSEL 263 A + L +V ND +G +A + G I G++ Sbjct: 170 KALTLTENWLTS---SDIQAVVAQNDGMAVGAAQAIKEAGLT-DKIKVYGVDATSDGLNA 225 Query: 264 SKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEK 323 G G++ + G S+++ N + P + V+ T++N E L+K Sbjct: 226 I--VNGGMTGTVSQGTENQGKISADLCSNLIYGQSVPKEVIAT--NVVYTKENVNEILKK 281 >UniRef50_D1AIH6 Galactose-binding protein n=3 Tax=Bacteria RepID=D1AIH6_SEBTE Length = 353 Score = 207 bits (527), Expect = 5e-52, Method: Composition-based stats. Identities = 57/319 (17%), Positives = 112/319 (35%), Gaps = 25/319 (7%) Query: 23 AENLKLGFLVKQPEEPWFQTEWKFA----DKAGKDLGFEVI---KIAVPDGEKTLNAIDS 75 + +K+G + + ++ + + D+ K+ G ++ + +D+ Sbjct: 39 KKEIKIGVALYKFDDTFISSVKDAINEISDEKSKETGEKITINAVDGQGQQATQNDQVDT 98 Query: 76 LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135 G + D S I+ KA+ + V+ + + V D + V A + Sbjct: 99 FITQGYDVIAVNMVDRTAASVIIQKAQAAGIPVVFFNREPVAEDMAKWDQLYYVGAKAEE 158 Query: 136 IGERQGQELYKEMQ-----KRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEK 190 G QG+ + + D K V+ A RT S+ AL+AAGF + Sbjct: 159 SGTIQGEVAADYFKANPDADKNKDGKIQYVILEGEPGHQDALLRTEYSIKALEAAGF-QV 217 Query: 191 QIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF--KAAD 248 T + + + + K L++ ND LG + A + G+ Sbjct: 218 DKLASDTALWQRANGQEKMAAWISAFGD-KIELVLANNDDMALGAIEALKAAGYLSDGKF 276 Query: 249 IIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTD 308 I IG++ + +A YG++L G ++ Y K+ K +TD Sbjct: 277 IPVIGVDATAPAKD--SLKAGLLYGTVLNDARGQGKGIFDIAYALAKKENPAEKVQGITD 334 Query: 309 VVL-------ITRDNFKEE 320 +T++N + Sbjct: 335 GKYLWIPYQKVTKENVDKF 353 >UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Gluconacetobacter diazotrophicus PAl 5 RepID=A9HPK6_GLUDA Length = 336 Score = 207 bits (527), Expect = 6e-52, Method: Composition-based stats. Identities = 61/330 (18%), Positives = 107/330 (32%), Gaps = 21/330 (6%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKA-GKDLGFEVI 59 M + A A + AAV A A + + +VK ++Q K A A K + + Sbjct: 23 MRRLLCA-ATMLCAAVAVGQAHAADRGIAVIVKTANSNYWQNVRKGAADAVAKVENYTMT 81 Query: 60 KIAVPD---GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116 +N + V+ DP + KA + V+ +D Sbjct: 82 FQGPTSESAVADQVNMVADAVTQKVAAIVLAPSDPDALVPSIRKAWEAHIPVVLIDSMIS 141 Query: 117 NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTT 176 ++ K + GE G+E+ + + G S V + + R Sbjct: 142 DSGAKY--YQSFLATDNEAAGEALGKEMVDHVGQTGKVAIMSYV-----PGVGSEIGRVG 194 Query: 177 GSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 236 G + QI + + A + +L +P++K I N+ T +G Sbjct: 195 GFRKYIAEHSH--IQIVGPFYSQSQMALAMNQTTDVLASNPDLKG--IFAANEMTAVGVG 250 Query: 237 RATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296 RA + G K+ + I +G + + + F + G K E + Sbjct: 251 RAIQQAG-KSGKLYAIAFDGNEDEQGFVR--SGTFQLLAVQGSYAMGAKGVETAIGVLTG 307 Query: 297 DVEPPKFTEVTDVVLITRDNFKEELEKKGL 326 P T VV +T N K+ L Sbjct: 308 --AKPTKYVNTGVVFVTSANLDSPEAKQVL 335 >UniRef50_C0C2H6 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2H6_9CLOT Length = 342 Score = 206 bits (526), Expect = 6e-52, Method: Composition-based stats. Identities = 60/340 (17%), Positives = 105/340 (30%), Gaps = 30/340 (8%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAEN--------------LKLGFLVKQPEEPWFQTEWKF 46 M A+ A S E LK+GF V ++ FQTE + Sbjct: 12 MTVLMIAMLAFAFTGCTSGPQKEEKTESKSNNDKSSLEGLKIGFCVTNRDQ--FQTEQEG 69 Query: 47 -ADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGY 104 A + G E+ + A D ++ + S +G +I D + I+ A Sbjct: 70 IAKELCDSKGIELSVADAKEDISTQISQVSSFVNAGCDLLMINCVDAESIQEIINAAGD- 128 Query: 105 DMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAIT 164 + + + + + V M+ G G+ + + ++ V+ + Sbjct: 129 -VPCVFFNR-MPSDHSVFDENHYYVGMSDYDCGYDMGKFMAEWLKDNNKTDTADGVLFLG 186 Query: 165 ANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLI 224 RT G L +G+ T D A D + K I Sbjct: 187 PLGATNTVSRTDGIKKGLADSGYK-VNWVFEDTAEWDRSKAMDKFTQFMGSGK--KFDFI 243 Query: 225 VGMNDSTVLGGVRATEGQGFKAA-DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHG 283 ND LG + A G+ A D GI+ + + L + SP Sbjct: 244 AANNDDMALGCIEALTAAGYSAPFDFPIAGIDATE--NGLLAVGDGTLTATFDQSPSKMT 301 Query: 284 YKSSEMLYNWVAKDVEPPKFTEVT---DVVLITRDNFKEE 320 E+ + + P + + T ++T DN + Sbjct: 302 NYCFEIAFAILQDTDMPEEVKDFTWIYKAEMVTADNVDDF 341 >UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protein n=23 Tax=Yersinia RepID=A4TI53_YERPP Length = 319 Score = 206 bits (525), Expect = 8e-52, Method: Composition-based stats. Identities = 56/332 (16%), Positives = 108/332 (32%), Gaps = 20/332 (6%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 M K L G+ MS SA AE LK+GF + +F ++ K+ G+ +I Sbjct: 1 MKKRLIGLLLAGVTISMSVSA-AEPLKIGFANRTLNGAFFNGLTEYMKIHAKEKGYTLIT 59 Query: 61 -IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 A D K + ++ + + G ++ DP+ G I A+ + + +D Sbjct: 60 TDARGDLNKQIADVEDMLSQGINYLILNPQDPQAGLRITEIAKRAGVPTVILDSDI---- 115 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS- 178 + V K G+ + + + + + R Sbjct: 116 ALEAPVITRVQANNAKNNNLIGEYAVGQFGDK----PMNCIFLSGNQGNLVGQARRDNFL 171 Query: 179 ----MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLG 234 L+ + D G A ++V + K + D LG Sbjct: 172 LGVAEAQLRKYNRTNVNFLSQGWGNWDQQGGLKAMEDIIVAQGD-KINCVYSEMDDMALG 230 Query: 235 GVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWV 294 +RA + K ++ +G L + + +PD+ E++ + Sbjct: 231 AIRALKAAN-KLDNVKVYAHDGYK--KGLEAVKKGELQATASNNPDLLTSTVLEVIGQYQ 287 Query: 295 AKDVEPPKFTEVTDVVLITRDNFKEELEKKGL 326 A P +LIT+DN + ++ + Sbjct: 288 AGQTSFPD-YVYIPSILITKDNVDKYYKEDSI 318 >UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VZZ1_MARMS Length = 294 Score = 206 bits (525), Expect = 9e-52, Method: Composition-based stats. Identities = 54/307 (17%), Positives = 108/307 (35%), Gaps = 24/307 (7%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-I 59 + +FT A+ LA+ + + + P++ + K + + Sbjct: 4 LKRFTA--IAVALASASFNLYAKDEPVVCASLLTQSHPFYIALGNGLKEGAKLQHINLKV 61 Query: 60 KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 +A D K +N I+ VI D K + KA ++ VI VD N+K Sbjct: 62 SVANQDLAKQINDIEDCITKNVDAIVISPVDSKGIRGPLKKAERANIPVITVDIGAENSK 121 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 V + G G+ K++ +G V+ ++ + + R G Sbjct: 122 -----IVSHIATDNYGGGVVAGKLAVKQLGGKGQ------VVMLSYPGISSVEARLQGFR 170 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 DA+ + +I V + + +ML +P+ LI D ++G A Sbjct: 171 DAVADT---DIKIVAVQPGK-TREESMTSTINMLQANPDTD--LIFAFGDDMMIGAGLAV 224 Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 Q KA + IG +G+ + + G + D G + +++ +++ Sbjct: 225 TKQKSKA---VVIGFDGMPEGIKAVD-ENDHIIGVVKQDADAMGKTAMKVVADYLNGKEV 280 Query: 300 PPKFTEV 306 ++ V Sbjct: 281 KSEYPIV 287 >UniRef50_A6DJR9 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DJR9_9BACT Length = 326 Score = 206 bits (525), Expect = 1e-51, Method: Composition-based stats. Identities = 53/322 (16%), Positives = 100/322 (31%), Gaps = 29/322 (9%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAE-----------NLKLGFLVKQPEEPWFQTEWKFADK 49 M K AL + + S ++ LG V P+F + A Sbjct: 1 MKKLLNALMLLACLGLFSSCGESDSASSNEPLQKNKKLLGITVMTLANPFFVELAEAAKA 60 Query: 50 AGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVI 109 + G+EVI ++ D EK + + ++ + + A ++ V Sbjct: 61 EAEKHGYEVIILSGDDAEKQAKQMKDFISQKVDAIIVAPKNTLAIGEPIKAANAAEIPVF 120 Query: 110 AVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELD 169 D + K V VM G+ Q + + G V+ + + Sbjct: 121 TADTGCTDPGAK---VVCNVMTDNFGGGKLAAQAMIDVLPNGGK------VLILDFKKAQ 171 Query: 170 TARRRTTGSMDALKAAG----FPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIV 225 + R G + + + I + + A L P++K + Sbjct: 172 SCLLRVDGFKEVIAEHNEAHPDKKIVIVAELDGAAAEEPSKKATEDQLNATPDLKG--VF 229 Query: 226 GMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYK 285 +ND + LG V A + K D+ IG +G+ E + + P G Sbjct: 230 AINDLSALGAVVALKKAN-KLQDVKIIGFDGLRIGKEAIL--RGEIHADPIQFPSEIGKL 286 Query: 286 SSEMLYNWVAKDVEPPKFTEVT 307 + + + + D P+ T Sbjct: 287 TVQQILAYKNGDEVKPEILIAT 308 >UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-binding protein n=4 Tax=Pseudomonas RepID=Q883G4_PSESM Length = 310 Score = 205 bits (523), Expect = 1e-51, Method: Composition-based stats. Identities = 51/306 (16%), Positives = 99/306 (32%), Gaps = 20/306 (6%) Query: 19 QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLA 77 S A+ L +G V + +F + + GK G ++I A + ++ I+ L Sbjct: 22 GSTWAKELTIGLAVANLQADFFNQIKQSVEAEGKARGVKIITVDAQGNSSTQVSQIEDLI 81 Query: 78 ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137 + V A+ + VIAVD +A G + + Sbjct: 82 TRQIDALIYIPAGATAAGVPVKAAKAAGIPVIAVDRNAPDAPG-----DTFIASDSVAGA 136 Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT 197 + + + K +G + R G + LK GFP ++ Sbjct: 137 KALAEYVGKVTDGKGRIA-----ILQGQLGTTPENDRAKGFQEGLK--GFPGLKVVAEQP 189 Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV 257 F A +L + P + + G D+ LG +A + ++ Sbjct: 190 AEWAQDKGFAVAQDLLQRDPNIT--VFFGRADAMALGAAQAVKVANLSQPVVVVG---FD 244 Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317 V+ L + ++ G + + A P + ++ + VL T+DN Sbjct: 245 GDVAGLKAVASGVLQATMTQQTQKMGRMAVASALDLKAGKAVPKE--QLLETVLTTKDNV 302 Query: 318 KEELEK 323 L++ Sbjct: 303 APFLQQ 308 >UniRef50_B1ZN56 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZN56_OPITP Length = 310 Score = 205 bits (523), Expect = 2e-51, Method: Composition-based stats. Identities = 45/309 (14%), Positives = 91/309 (29%), Gaps = 16/309 (5%) Query: 20 SAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAA 78 + L +GF E W + + G ++ A + + + A+ S A Sbjct: 16 TVSQAKLTVGFAQTGSESVWRAANSESIKSEAEKQGIDLRFVDAQSNVDNQMKALRSFIA 75 Query: 79 SGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGE 138 V+ A++ A+ + VI +D + V P + K G+ Sbjct: 76 DQVDAIVLAPLVVSGWEAVLQDAKAAGIPVIIMDRKIV---ADPSLYATFIGSDFFKEGQ 132 Query: 139 RQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTK 198 + + ++ V A R + +I Sbjct: 133 MAAEWILAHADQKRK-----IVELQGEPGSSAANERQRAFASTMATHTSDGFRIVARKVA 187 Query: 199 SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA-DIIGIGINGV 257 + A +L H ++ ND LG + A E G DI+ + I+ + Sbjct: 188 NFRRDQGRQAMAELLTTH-GSDIEIVFAHNDDMALGAIEAIEAVGRSPGRDIMVVSIDAI 246 Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317 E + ++ +P + G K E + + + ++I N Sbjct: 247 KTAVEAVA--SGKLNCTVECNP-LFGPKVIEAVVRLTSGGTVMKE--TFNKDIVIDASNA 301 Query: 318 KEELEKKGL 326 + L + Sbjct: 302 AQLLPSRQY 310 >UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R5X6_ARTAT Length = 328 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 57/317 (17%), Positives = 96/317 (30%), Gaps = 27/317 (8%) Query: 11 IGLAAVMSQSAMA--ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGE 67 G A +Q A + K+ L+ + + K+LG EV + A D Sbjct: 21 TGCAPSAAQEANDGTKTKKIAVLLYSQSFEFMVALGQGVKDKAKELGVEVTVLDAKGDSS 80 Query: 68 KTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVP 127 ++ I A G G V+ + V V VD Sbjct: 81 TQISQIQDQLAQGVDGIVLSPNNSAELVPGVQMIHDAGKTVTTVDSVIPGDIA-----DA 135 Query: 128 LVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGF 187 V K G+ + L K M ++G + + A A R G D +K F Sbjct: 136 AVAFDNEKAGKLGAEALAKLMGEKG-----TVLEYQGAKGAYHAILRGKGFNDGIKQ--F 188 Query: 188 PEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA 247 P ++ A + ND V G V A Sbjct: 189 PGIKVIGR-DAQWTADNALSLTVDNFTADSSINGL--FSHNDEMVRGIVSGLSQINKDAP 245 Query: 248 -----DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302 I +G++G L + + ++ +P G + + + + P Sbjct: 246 VGAANHIPLVGVDGT--PLALDRIRNGVQDATMDQNPFEMGALALQAQVDLLDGKQVPK- 302 Query: 303 FTEVTDVVLITRDNFKE 319 ++TD LIT++N + Sbjct: 303 -MQLTDTKLITKENVDD 318 >UniRef50_B5YAA5 ABC transporter sugar-binding protein n=2 Tax=Dictyoglomus RepID=B5YAA5_DICT6 Length = 331 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 58/333 (17%), Positives = 113/333 (33%), Gaps = 26/333 (7%) Query: 1 MHKFTKALAAIGLAAVMSQSAM-AENLKLGFLVKQPEEPWFQTEWKFADKAGKDL----- 54 M KF + + +M+ +A + L ++ K P F+ A K ++L Sbjct: 1 MKKFLMIFFIVVIFLLMATTAQTPKKLVFAWIPKALNNPVFELGRDGAFKRAEELSKKGP 60 Query: 55 -GFEVIKIA--VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAV 111 EV+ +A D + ++ + A G I DP ++ KA + V+ Sbjct: 61 YKVEVLYVASVASDATEQARVVEDVVARKVDGIAISCNDPTALIDVINKAVEAGIPVMTF 120 Query: 112 DDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTA 171 D A + + + G+ + L + M G + V Sbjct: 121 D-----ADSPKSKRFTYLGVNNYEGGKWAAKLLVRAMGTSGDVALLTGV-----PGALNL 170 Query: 172 RRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDST 231 R G D +K +P+ +I +DI + ++P+++ W VG+ Sbjct: 171 EERMRGFKDEIKK--YPKIKIVTTVACYDDINRGVQVVEETMQKYPKLRGWFFVGLWPLL 228 Query: 232 VLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLY 291 G + KA + + + + EL + G + GY + ++LY Sbjct: 229 AERGSMPLWEKAAKAKKVFTVAFDTL--PVELQLLKEGYLCGLVGQKYWGWGYDAIDILY 286 Query: 292 -NWVAKDVEPPKFTEVTDVVLITRDNFKEELEK 323 V + P D ++T+ N + Sbjct: 287 RKVVNNEKFPDWIDSGMD--IVTQKNVDAMIRA 317 >UniRef50_Q1M6L8 Putative substrate-binding component of ABC transporter n=1 Tax=Rhizobium leguminosarum bv. viciae 3841 RepID=Q1M6L8_RHIL3 Length = 340 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 64/322 (19%), Positives = 105/322 (32%), Gaps = 16/322 (4%) Query: 4 FTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIA 62 ++ A A + + SAMA++L G++ E P+ K ++A K+ G + V+ Sbjct: 24 IFRSSALTLTALLFAGSAMAKDLTFGYVPASLEYPYNVMTAKGFEEAAKEKGVKTVVIDP 83 Query: 63 VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAV-----DDQFVN 117 EK N++D L + D + V K + ++A+ D Sbjct: 84 RGSVEKQGNSLDDLLSQKVDAIGFLPLDSVVAEGFVDKVSDAKVPIVAIALQVGDSAKRQ 143 Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177 K LV + G G+ + D + + + T G Sbjct: 144 LKDPYPGLSALVATDNYQSGVVAGEMAAGVLP---KDKTAKIGIVMGDPAYTIVKLDTDG 200 Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237 AL AG I + + L HP++ LI D +G R Sbjct: 201 FKAALDKAGAK-YTIVAEQPTNWTPDEGEAVCQNFLTAHPDID--LIYSHADDMAIGCAR 257 Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 A + K I G G + A YGS+ P + G + LY K Sbjct: 258 AIDASASKPKLIATGG--GSKLGHDAILA--GEMYGSVCTRPQLLGKLMFDALYEAATKP 313 Query: 298 VEPPKFTEVTDVVLITRDNFKE 319 P D+ IT++ Sbjct: 314 ETPKGRFVTYDMPPITKETIDS 335 >UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0G4U9_9FIRM Length = 338 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 54/338 (15%), Positives = 100/338 (29%), Gaps = 26/338 (7%) Query: 2 HKFTKALAAIGLAAVMSQSAMAEN---------LKLGFLVKQPEEPWFQTEWKFADKAG- 51 L Q AE+ + +G + E W + + Sbjct: 10 KVIIVLAVLALLTGCAGQEPEAEDTRTPTDDNLIVVGVSQEGSESVWRTANTRSVKETLT 69 Query: 52 KDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIA 110 K+ G+ +I A E + A+ S + V ++ +AR ++ VI Sbjct: 70 KENGYFLIFKNARQKQENQIKALRSFISQRVDYIVFSPIVEDGWDTVLREAREAEIPVIL 129 Query: 111 VDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQK-RGWDVKESAVMAITANELD 169 +D + V + G G+ L ++ R D + + V+ Sbjct: 130 MDRKINVKD--ESLYTAWVGSDFVEEGRNAGKWLEDYLKGQRFNDDQVNIVVLQGTAGTT 187 Query: 170 TARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMND 229 RT G + AA I + + +L +PE+ ++V ND Sbjct: 188 AMFGRTQGFEEI--AAKHENWNILEQTNADFTTAKGEEEMRRLLNTYPEID--VLVSQND 243 Query: 230 STVLGGVRATEGQGF---KAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKS 286 G + A + G DI I +G L K + + +P G Sbjct: 244 DMTFGALEAIQSAGRTTGTGGDITVISFDGTK--KALEKVKTGAINVDVECNPY-QGKYI 300 Query: 287 SEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKK 324 E++ + + T+ N L + Sbjct: 301 EEIIQALETGQSIEKD--NYVEEKVFTQKNVLSVLNDR 336 >UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZRB9_9FIRM Length = 333 Score = 205 bits (522), Expect = 2e-51, Method: Composition-based stats. Identities = 70/341 (20%), Positives = 130/341 (38%), Gaps = 33/341 (9%) Query: 1 MHKFTKALAAIGLA-AVMSQSAMA---------ENLKLGFLVKQPEEPWFQTEWKFADKA 50 M K + ++ L +M Q A+A + L + + + +P+ +KA Sbjct: 1 MKKRMSVVLSMALVMGIMGQCAIAVNAASKTDDDTLNITLINQGSGQPYIAAYKNCFEKA 60 Query: 51 GKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVI 109 KDL +V + D + NAI + +SGA G VI DP V +A ++V Sbjct: 61 EKDLNIKVNLVDGGWDANQQANAIQNAISSGADGIVISPVDPSAVCTYVDEALDAGIEVC 120 Query: 110 AVDDQFVNAKG---KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITAN 166 A+ Q +TV LV T++G + + + G + Sbjct: 121 ALTTQIGTGDAEDPVYPETVGLVGHIETEVGRTAMDIAAEALDRSGKIA-----IIEGTP 175 Query: 167 ELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVG 226 + R G + + +P+ ++ + A+ A +++ +PEV L++ Sbjct: 176 GMSDTEGRKKGIDE--ENKEYPDIEVVSRVCGEWVVDKAYTAMQNIIQSNPEV--ELVIC 231 Query: 227 MNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKS 286 +D+ +G +A E + +GI G +L K YG+++ P+ Y + Sbjct: 232 HSDNMAVGAAKALEDADMT-DKVKIVGIGGSKDALDLIK--KGEIYGTIMYVPETEAYTA 288 Query: 287 SEMLYNWVAKDVEPPKFTEVTDVVLI-------TRDNFKEE 320 E V + E F V D+ L T++N + Sbjct: 289 LEATAKVVRGEAEKETFYNVQDLPLFAETGDVCTQENVDKF 329 >UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM 13814 RepID=A6BDP6_9FIRM Length = 309 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 52/296 (17%), Positives = 112/296 (37%), Gaps = 21/296 (7%) Query: 24 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAK 82 + LK G P+F + +++ + G +I + D +K I + G Sbjct: 26 KQLKFGATYMTMNNPYFVNMDENIEESVQAKGDILITRDPLQDQKKQNEQIKDMINEGID 85 Query: 83 GFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQ 142 + D + + + V +D + + + V ++ G + + Sbjct: 86 VLFLQPVDRNKVRPALELCKKKHIPVFVIDSEVSDTEA----VVSTIVSDNYDAGVQCAK 141 Query: 143 ELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDI 202 ++ K+ + ++ + L++ R G D +K G P+ +I + + + Sbjct: 142 DMMKK-------KTSANIIIVNQKALNSINERVKGFRDTIK--GHPQYKIVEEKESAAEF 192 Query: 203 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSE 262 A ++ + + + +++G ND LG + A + K ++ G++G Sbjct: 193 EIAMKVMEKII--YEKKNYDVVMGGNDPIALGCIAAMQMTD-KTDQVMVYGVDGSPDGKA 249 Query: 263 LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318 + KA G+ SP G K+ + Y+++A + T V LIT DN K Sbjct: 250 MIKA--GFLEGTAAQSPIKIGEKAVQTAYSYLAGETVKKHVT--IPVELITADNLK 301 >UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Clostridiales RepID=C2L0R0_9FIRM Length = 333 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 48/298 (16%), Positives = 101/298 (33%), Gaps = 20/298 (6%) Query: 22 MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASG 80 E +G + ++ + ++ K+ G+ + ++ A D K L + Sbjct: 55 KGEAKTIGVSLLNSTHVFYNSIQTAMEEQAKEYGWTLDVQDAAGDANKQLGQVQDFITKK 114 Query: 81 AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140 VI + +++ A + V +D V V K G+ Sbjct: 115 VDAIVIAPTNSAGSKSMIELAEKAGIPVFTMDIASDGKP------VTHVATDNKKGGQLA 168 Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSN 200 + + + K+ V IT +E+++ R TG D LK P+ ++ V S Sbjct: 169 AEYVVNNI----LTEKKGNVAVITYSEIESCVDRETGFTDYLKENA-PDIKVVDVQNYSG 223 Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260 D A D +ML+++ + ++ + D +G + + IG +G Sbjct: 224 DQQKAADVMQNMLLKNDNID--VVFCVGDPAAIGALSSITAANAAT---KIIGYDGNPEG 278 Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318 K + + + P G + E + + + + + +I N K Sbjct: 279 VAEIK-KGGNWVADVAQDPAGIGKTTLEAIKKHLEGEKVDSEI--LIAPYIIDAKNAK 333 >UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R356_ARTAT Length = 314 Score = 205 bits (521), Expect = 3e-51, Method: Composition-based stats. Identities = 54/308 (17%), Positives = 115/308 (37%), Gaps = 20/308 (6%) Query: 17 MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDS 75 + + +G + + ++ KA D G+E++ A + + +N + + Sbjct: 19 AANAGGTGKKTIGVSMPEFHSLFYVAAVDGMKKAAADEGYELVVLNANGNSSQQVNQVQN 78 Query: 76 LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135 L + D G+A VA+A+G ++ VIA+D + D + + K Sbjct: 79 LVTQQVGAVIFAMQDATAGAAGVAEAKGANIPVIAIDQRPQG------DVTTFIGSDSVK 132 Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195 L K+M +G V+ T R+ G L+ P+ ++ Sbjct: 133 ASTELCDYLAKQMGGKGNLAIIKGVL-----GSSTEIERSKGCGSILEKN--PDIKVVST 185 Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255 D A++ A +L +PE++ I ND LG +A G ++ + ++ Sbjct: 186 TNADWDENKAYNVAQDVLTANPELQ--AIFAQNDGMALGAAKAAAQAGRS--NLKIVSVD 241 Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315 G V + ++ ++ P G + ++ + + ++ VL+T++ Sbjct: 242 GFPQVYDAI--ESGQVLATMSQEPYQMGELAVRTAIKAMSGEAGSIQKEQLQPTVLVTKE 299 Query: 316 NFKEELEK 323 N +E Sbjct: 300 NLEEARSA 307 >UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQT3_9CLOT Length = 354 Score = 204 bits (520), Expect = 4e-51, Method: Composition-based stats. Identities = 62/341 (18%), Positives = 112/341 (32%), Gaps = 41/341 (12%) Query: 1 MHK-----FTKALAAIGLAAVMS------------------QSAMAENLKLGFLVKQPEE 37 M K LA + LAA S + E + + ++ K Sbjct: 1 MKKRVVSILLTGLAVLSLAACTSNGLEAASATNDNAKEAEAGTEKKEGISVYWVGKTLNN 60 Query: 38 PWFQTEWKFADKAGKDLGFEVIK---IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLG 94 PW+ + FA + +LG ++ D EK ++ I++ A V+ Sbjct: 61 PWWISVSDFAQQTADNLGVDLTIAIPQEEVDLEKQVSMIEAAIEKKADAIVVSAASSDGV 120 Query: 95 SAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWD 154 + KAR +K++ D + + V + G+ + +++ G Sbjct: 121 IPAIKKAREAGIKIVNFDTRISDT----SVIDAFVGGDDVAGAYKAGKYICEQLGGEGEV 176 Query: 155 VKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLV 214 + E T R G M A A +P ++ A D ++L Sbjct: 177 A-----IITGLMEQSTGVDRHAGFMQA--CAEYPGIKVVAEQGAEWSSDKAADVTTNILT 229 Query: 215 QHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGS 274 +P VK I ND +G V A + G KA D+I +G +G+ ++ Sbjct: 230 ANPNVK--AIFACNDQMAVGMVNAAKAAGKKADDLILVGYDGILDAVNMT--MDGDLDAF 285 Query: 275 LLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315 + G ++ V + D L+T + Sbjct: 286 VSLPNLDEGAMGVKLATALVMNSDYHYDREILYDCTLVTGE 326 >UniRef50_C2KUT6 Galactoside ABC superfamily ATP binding cassette transporter, binding protein n=3 Tax=Clostridiales RepID=C2KUT6_9FIRM Length = 384 Score = 204 bits (519), Expect = 5e-51, Method: Composition-based stats. Identities = 58/332 (17%), Positives = 116/332 (34%), Gaps = 18/332 (5%) Query: 3 KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV---- 58 K T+ AAV S + K+G + Q + + + GF+ Sbjct: 56 KETEKAMEGTKAAVEEMSGDFSDKKVGVCIYQFSDNFMTLFRTELENYLVSKGFKKENIK 115 Query: 59 IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 I D N I++ ++ + + I K + + ++ ++ + Sbjct: 116 IMDGANDQATQTNQIENFITDKVDVLIVNPVNSSSAATITDKVQAAGIPLVYINREPDQD 175 Query: 119 KGKPMD----TVPLVMMAATKIGERQGQELYKEMQKR---GWDVKESAVMAITANELDTA 171 + K + V V A + G QG+ + + + K +M E A Sbjct: 176 EEKRWEEKNWDVTYVGCDARQSGTFQGEIIASVGMDKLDMNGNGKVDYIMIKGDPENIDA 235 Query: 172 RRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDST 231 + RT S+ AL+ AG E + D A + L ++ + ++ NDS Sbjct: 236 QYRTEFSVKALQDAGM-EVNKLDEQVGNWDQALAQSLVANALAKNGK-DIEVVFCNNDSM 293 Query: 232 VLGGVRATEGQGFK-AADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEML 290 LG ++A + G DI +G++ ++ A G++ + + + Sbjct: 294 ALGALQAIQAAGRTVGKDIYLVGVDALEEAC--QNVLAGTQTGTVFNDFLTQSHAAGDAA 351 Query: 291 YNWVAKDVEPPKFTEVTDVVLITRDNFKEELE 322 N++ D V +T+DN ++ L Sbjct: 352 INYLGGKGN--DHYIGCDYVKVTKDNAQDVLN 381 >UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-binding protein n=3 Tax=Bacteria RepID=C3RLD7_9MOLU Length = 321 Score = 203 bits (518), Expect = 6e-51, Method: Composition-based stats. Identities = 55/322 (17%), Positives = 102/322 (31%), Gaps = 25/322 (7%) Query: 1 MHKFTKALAAIGLAAVMSQS---AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE 57 M F + + S A + G P+F+ KA + G Sbjct: 13 MMVFLCLCITLMIFGFYSYPDFKATVGQQRFGATYMTMNNPFFEVINNEIKKAVEANGDV 72 Query: 58 VIKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116 +I + D +K I L + D K + A+ + VI VD Sbjct: 73 LITLDPILDVDKQNEQILDLIDQRVDAIFVNPIDAKKIEIGLKAAKKAKIPVIVVDAPIY 132 Query: 117 NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTT 176 + + G +++ + + ++ + +A R Sbjct: 133 DESLVN----CSIASNNYDAGVLCAKDMMSK-------RDHAKIILLEHATAKSAVERIQ 181 Query: 177 GSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 236 G +D + + Q+ I A ML + P+V +++ +ND + LG + Sbjct: 182 GFLDTIASNA--NYQVINRADCDGQIEIAMPTMKQMLKETPDVD--VVMALNDRSALGAL 237 Query: 237 RATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296 A E + +++ G++G V EL + SP G + + + Sbjct: 238 AAIES--MEIDNVLVYGVDGSPDVKELIN--TGLIQATAAQSPVKMGQLAYQKAKALLEN 293 Query: 297 DVEPPKFTEVTDVVLITRDNFK 318 K V LI+RDN Sbjct: 294 KKIEKKIE--VPVELISRDNIS 313 >UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Actinomycetales RepID=C7QJZ0_CATAD Length = 371 Score = 203 bits (518), Expect = 6e-51, Method: Composition-based stats. Identities = 54/298 (18%), Positives = 96/298 (32%), Gaps = 18/298 (6%) Query: 28 LGFLVK-QPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFV 85 +GF P+ TE K LG ++I+ A D + I+ + A GAK + Sbjct: 84 VGFSQSESTSNPFRSTETDSITNQAKSLGVKLIQRNANADVNAQNSQIEDMIAQGAKVLI 143 Query: 86 ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145 + + +A+A+ + V+ +D D + + + +L Sbjct: 144 VAPENSDGLGPALAEAKAKKIPVLTIDRTVTGT--ACSDFIAFIGSNFYGQAQIAADDLA 201 Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205 + + + RT G D +K A +P + T D Sbjct: 202 TATGSQAKVA-----ILSGTPGNNVTTDRTNGFQDQVK-AKYPNMTVVASQTGKFDQTDG 255 Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA-DIIGIGINGVDAVSELS 264 ML +P + + ND LG ++A G K DI + I+G + Sbjct: 256 QSVMAQMLQANPGIT--AVYAENDEMALGAIQAITAAGKKPGKDIKIVSIDGTQ--QAVQ 311 Query: 265 KAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELE 322 A Y + +P G + L + K T+ N ++ L Sbjct: 312 DVAAGTIYADVETNPR-FGPLAFSSLQAFFGTSGVASKVIIKDSHF--TQANAQQALS 366 >UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CSL0_9FIRM Length = 389 Score = 203 bits (518), Expect = 6e-51, Method: Composition-based stats. Identities = 52/311 (16%), Positives = 101/311 (32%), Gaps = 28/311 (9%) Query: 17 MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL---GFEVIKI-----AVPDGEK 68 + + ++ VK E +Q + +D G ++ D E Sbjct: 83 GAITKSSDEYSFAGNVKAFENVVWQEIANGYEGFAEDATAAGCKLSVDTTSPMGESDEEG 142 Query: 69 TLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPL 128 L+ + G ++ + A D+ V AV+++F A Sbjct: 143 QLSILKDQVRKGVNAVLLSPISDANCLPGIEAAHEADIPVYAVNNEFNGADM-------F 195 Query: 129 VMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFP 188 V + + G+ + + +++ G + + + R RT G + Sbjct: 196 VGPNSLEQGQLAAEWVNEKLGGSGDVA-----IVMGMAKTAVTRNRTQGFEEWFADND-S 249 Query: 189 EKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK-AA 247 + Q+ D A D A + L +P++K I ND LG + A + Sbjct: 250 DIQVVAKQNADWDRSQAKDVAATFLKTYPDLK--AIFCNNDVMALGVIEAVKEADLTLNK 307 Query: 248 DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVT 307 DI IG +G + +A ++ P GY ++E+ Y + P T Sbjct: 308 DIYVIGCDGQSEAYDSIRANE--MAATIDTFPYYEGYMAAEVCYRSLIGQTVP--RVVFT 363 Query: 308 DVVLITRDNFK 318 ++ N Sbjct: 364 PSKMLDSTNVD 374 >UniRef50_A6M1Q7 D-galactose-binding periplasmic protein n=4 Tax=Clostridium RepID=A6M1Q7_CLOB8 Length = 361 Score = 203 bits (517), Expect = 7e-51, Method: Composition-based stats. Identities = 54/353 (15%), Positives = 113/353 (32%), Gaps = 33/353 (9%) Query: 1 MHKFTKALAAI----GLAAVMSQSAMA------ENLKLGFLVKQPEEPWFQTEWKFADKA 50 + K + L + L++ + A + +K+G + + ++ + K + Sbjct: 13 IKKLSGLLTVVSIFNVLSSCSANVKSANYSNDIKEIKIGVTLYKQDDAFISEISKNIEDI 72 Query: 51 GKDL----GFEVIK---IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARG 103 K+ +++I A + N +D A + D S I+ KA+ Sbjct: 73 AKEKENQGKYKIIVNVADAKGNLINQSNQVDKFVAQNYDVICVNMVDRTAASMIIDKAKS 132 Query: 104 YDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQK------RGWDVKE 157 ++ ++ + + V + + + V A + GE Q + +K + D K Sbjct: 133 ANIPIVFFNREPVEEDMERWNKLYYVGADAQQSGEMQANIIINAYKKDNKMVDKNGDGKI 192 Query: 158 SAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHP 217 VM + RT + + G E + T + A + + Sbjct: 193 QYVMLEGEQGHQDSLIRTEYCIKTITQNGI-ELEKLADDTANWQSAQATTKMSQWIKNFG 251 Query: 218 EVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLP 277 + K ++ ND LG + A + +GI+G+ L + G++L Sbjct: 252 D-KIEVVFSNNDEMALGAINAINDANIGGKKPLVVGIDGL--PKALEAVKNGSMIGTILN 308 Query: 278 SPDVHGYKSSEMLYNWVAKDVE------PPKFTEVTDVVLITRDNFKEELEKK 324 + Y + T +T DN +E K Sbjct: 309 DSKKQANAIFNLAYTLASHGNVNSIEGLEKGKYIRTPHAEVTSDNVDLYIENK 361 >UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobacterium dentium RepID=D2Q6W7_9BIFI Length = 327 Score = 203 bits (516), Expect = 9e-51, Method: Composition-based stats. Identities = 56/340 (16%), Positives = 121/340 (35%), Gaps = 29/340 (8%) Query: 1 MHKF----TKALAAIGLAAVMSQSA------MAENLKLGFLVKQPEEPWFQTEWKFADKA 50 M K A+AA +A + + A ++N ++ + K + ++ + + AD A Sbjct: 1 MKKSKYIALAAVAAFTVAPLSACGAGQSNGSESKNYEIAMVAKGFSQSFWVSVHQGADDA 60 Query: 51 GKDLGFEVIKIAVPD---GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMK 107 G V + +K + + + I D + V A+ + Sbjct: 61 AAKYGATVTFNGPDNDSQVDKQADMVQNAINKSPDAVAIAPLDEAALTPAVQSAKSASIP 120 Query: 108 VIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANE 167 + A D F V + ++G+ + L + +G + + Sbjct: 121 LFAFDTAFET---NADAITSTVKTSNREVGKVAAENLIALLNGKGKYA-----VIAHSQT 172 Query: 168 LDTARRRTTGSMDALKAAGFPEKQIY-QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVG 226 T+ R G +D +K P+ ++ +V + D A D A+++L +P++ I Sbjct: 173 DATSTERRDGFLDYMKKNA-PDMEMVGEVQYSNADQAKAQDIASAILQANPDLD--AIFA 229 Query: 227 MNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKS 286 N++TV+G E ++ +G++ A + GS+ +P GYK+ Sbjct: 230 TNEATVVGAATPVESALKSGHKVLLVGVDSGKAQQ--QYIRDGVISGSVSQNPYQIGYKT 287 Query: 287 SEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKKGL 326 E + + DN ++ ++ + Sbjct: 288 IENAVKSLNGEKIDKVIDS--GCFWYNADNIDDDDVQQAM 325 >UniRef50_C6D2L3 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Bacillales RepID=C6D2L3_PAESJ Length = 332 Score = 203 bits (516), Expect = 9e-51, Method: Composition-based stats. Identities = 50/305 (16%), Positives = 102/305 (33%), Gaps = 20/305 (6%) Query: 25 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPD---GEKTLNAIDSLAASGA 81 ++ + K +++ + A + G V I P + + Sbjct: 39 DIIVTVKAKSSAIDFWKVLITGVEDAANEFGANVTVIGPPSETEIDTQTEQLKQAIRQKP 98 Query: 82 KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141 V+ D + + +K+I VD + + + + GE+ G Sbjct: 99 DAIVMAATDYNRLVPVAQQIVKAGIKLITVDSRINSDDA-----LSFIATDNIAAGEKAG 153 Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201 +E+ K + + + + R G L+ G ++ Sbjct: 154 EEMAKLLPE---SSSSKVAIMSYVYGTSSQLEREKGVRQWLE--GHSHIEVASTLYSEGR 208 Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261 + A++ +L + P +K IVG+N+ + +G RA G + +G + V Sbjct: 209 LEKAYELTKELLSEDPGIKG--IVGLNEPSTVGAGRAIRDLGLS-GKVKLVGFDSS--VD 263 Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEEL 321 E+ + +++ P GY S + V P T+ V+I +DN E Sbjct: 264 EVKLIEGGVLQATIVQKPYNMGYLSVKTAIEAVRGKKVPK--LIDTESVIINKDNMYTEQ 321 Query: 322 EKKGL 326 +K L Sbjct: 322 NQKLL 326 >UniRef50_C5EU51 D-galactose-binding periplasmic protein n=4 Tax=Clostridiales RepID=C5EU51_9FIRM Length = 350 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 55/336 (16%), Positives = 112/336 (33%), Gaps = 30/336 (8%) Query: 1 MHKFTKALAAIGLAA------------VMSQSAMAENLKLGFLVKQPEEPWFQTEWKFAD 48 M + L A+ L + ++++G L+ + ++ + T + Sbjct: 1 MKRNWIYLLAVCLGIGILIGFWQYRENEGQRQTKKNSIRIGVLLYRGDDTFIGTLRAGLE 60 Query: 49 KAGKDL----GFEV---IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKA 101 K+ G +V I + + ++ L + G I + D S I+ KA Sbjct: 61 DKAKEYEQKTGIKVKLDILDSKGSQNTQNSQVERLISLGCDALCINSVDRSSASIIIDKA 120 Query: 102 RGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKR------GWDV 155 V+ + + V + + V A + QG L +K + Sbjct: 121 MDAGTPVVFFNREPVEEDMNRWEKLYYVGADAKESAVLQGDALVDAYRKDSRTLDANGNG 180 Query: 156 KESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQ 215 S V+ + RT S+ LK G P ++I + D A L + Sbjct: 181 LVSYVLLEGETSHQDSLIRTEWSIQTLKDGGVPLEKITGGI-ANWDRSQASALMEQWLKE 239 Query: 216 HPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSL 275 +P + L+V ND LG + A G A I +GI+G + + + ++ Sbjct: 240 YPG-QIELVVSNNDDMALGAIDAMNRAGIGANSIKVVGIDGT--PVGIKALEEGTLFATV 296 Query: 276 LPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311 + + ++ ++ +P + + Sbjct: 297 ESDKERYAQAIFDIAWSLSLDQ-DPKSVVPLVNGKY 331 >UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasmic component) n=2 Tax=Firmicutes RepID=Q97J33_CLOAB Length = 325 Score = 202 bits (515), Expect = 1e-50, Method: Composition-based stats. Identities = 47/299 (15%), Positives = 98/299 (32%), Gaps = 21/299 (7%) Query: 23 AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG-FEVIKIAVPDGEKTLNAIDSLAASGA 81 K G +++ + G V + A D K + I Sbjct: 41 GSRKKFGATYMTTNNRFYEIINDEIRSVVESNGDILVTRDAALDKNKQMQQIYEFIKLKV 100 Query: 82 KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141 K I D K + A+ + VI VD + K V+ G + Sbjct: 101 KAIFINPVDWKQIKPALIAAKNAGIPVIVVDTPVYDDK----LVACTVISDNYDAGVQCA 156 Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201 + L K ++ +M I ++ + R G +D + A+ + +I Sbjct: 157 KYLMK-------SKSKANIMLIEHSKAKSGIDRIKGFVDTIGAS--KQYKIVAAGDSEGQ 207 Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261 + + ++ +H V I+ +ND + LG + A + G ++ G++G Sbjct: 208 LDKTMSLVDDLIKKHTNVD--AIMALNDPSALGALAALKENGL-LGKVMVFGVDGSPEAK 264 Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320 + + P+ G+ ++E Y+ + + LI+++N + Sbjct: 265 TMI--HDGFMTATSAQFPNKIGHIAAEKAYDILKGKRLKRDVI--VPISLISKENLLKY 319 >UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Thermotoga lettingae TMO RepID=A8F472_THELT Length = 314 Score = 202 bits (514), Expect = 1e-50, Method: Composition-based stats. Identities = 44/333 (13%), Positives = 95/333 (28%), Gaps = 37/333 (11%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTE----WKFADKAGKDLGF 56 M K L I + ++G + + W + D Sbjct: 1 MKKVLIFLLLIVTILSFA------KFRVGVAIPAADHGWTGGMVWWAQYAIKQYANDPDV 54 Query: 57 EVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116 E + + + + + +L A G VI + + I +A + I VD Sbjct: 55 EFYLVTAKEPSEQIAQVQALLAKGIDALVINPYESAPLTPICVQAFRDGIFTIIVDRGIN 114 Query: 117 NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTT 176 + + + G G+ + +++ +G V+ I R Sbjct: 115 SEE-----YNVYIAGDNYMYGYLAGKYIAEKLGGKGN------VVVIEGIPSTINTERVE 163 Query: 177 GSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 236 AL+ +P +I AF+ ++L + P + + +D + G + Sbjct: 164 AFKKALEP--YPNVKIIAQQPGYWSREKAFEIMQTLLTKFPNID--AVWTGDDDMLHGVL 219 Query: 237 RATEGQGFKAADIIGIGINGVDAVSELSKAQATG--FYGSLLPSPDVHGYKSSEMLYNWV 294 A + G ++ G + K G G P + + + Sbjct: 220 LALKQAGRDKNIVLVGG----ACEKNIVKMIMDGHPLIGVDFTYPPNMISTAINLAVMAL 275 Query: 295 AKDVEPPKFTEVTD------VVLITRDNFKEEL 321 + + +T++N K+ Sbjct: 276 KGEHLNGFYQRGIPRKIILSTETVTKENAKDYY 308 >UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C0J1_9CLOT Length = 333 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 56/339 (16%), Positives = 112/339 (33%), Gaps = 37/339 (10%) Query: 1 MHK-FTKALAAIGLAAVMSQSAMAEN--------------LKLGFLVKQPEEPWFQTEWK 45 M K F A + + ++ + E +K+ F + + +++ W Sbjct: 1 MKKRFLAAFLCLTMCLSLAACSSGEKEKKGSDSGDKKEESVKVAFSIPEMFSTFWEACWY 60 Query: 46 FADKAGKDLGFE-VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGY 104 +K K+ G+E + D E ++ + S G + + + + Sbjct: 61 GFEKQAKEYGWEATLLDPQGDLELQISQLQSQVTKGVDAIGVAPIENEAIGPALTTVNEA 120 Query: 105 DMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAIT 164 + V VD + V + K GE ++L K+ + ++ Sbjct: 121 GVPVFCVDRRGEGE------VVSTLETDNVKAGEAMAEQLVKDYGE-----DVDVLIIQG 169 Query: 165 ANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS-NDIPGAFDAANSMLVQHPEVKHWL 223 RT G + L+ + I P+ A + L +P++ + Sbjct: 170 VLSDTPTLDRTQGVKNVLEK--YENITIVGEPSAGEYSNEAALATTKNFLETNPDLD--V 225 Query: 224 IVGMNDSTVLGGVRATEGQGF--KAADIIGIGINGVDAVSELSK-AQATGFYGSLLPSPD 280 I D+ V G V A + G K + +GI VD E+ K + G+ P Sbjct: 226 IFTCTDALVPGIVAALKEAGKTGKVGEENHVGIYSVDGAGEVLKLIEDGTVDGTFSQYPI 285 Query: 281 VHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 G + + + ++ K DV +T +N + Sbjct: 286 QFGIDTVKSMKTYLDGGKVEEKVYYNGDV--VTDENIDK 322 >UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0DAQ0_9CLOT Length = 332 Score = 202 bits (514), Expect = 2e-50, Method: Composition-based stats. Identities = 46/309 (14%), Positives = 104/309 (33%), Gaps = 24/309 (7%) Query: 15 AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-----IAVPDGEKT 69 ++ + K+ F+VK + +F + A+K G+D ++ + E+ Sbjct: 43 GGGQTASTGQKYKIAFIVKSLQSAFFINMTEAAEKCGQDYADKISVEIMAPQTPFNIEEQ 102 Query: 70 LNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLV 129 + ++ + VI D + + KA + V+ + K D V V Sbjct: 103 IQLVEQCITNKMDAIVIAPCDSEGIVPAIKKANDAGILVVTANT-----KANGGDIVSYV 157 Query: 130 MMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPE 189 +G L++++ +G ++ T+ R G +ALK +P Sbjct: 158 GAQNFDVGYSLATALFEKLGGQGK-----VILIEGKAGNSTSEERAEGFKEALKE--YPG 210 Query: 190 KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADI 249 ++ D A + L + ++ ++ + LG + A + G + Sbjct: 211 IELLASQPADWDRASAMTVMENCLQTYDQIDG--VLTLTKDMGLGTIEAIKSAGRDKEIV 268 Query: 250 IGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDV 309 + D V KA Y S + Y + + ++ + Sbjct: 269 SMT-FDVDDDVISALKA--GDLYASGNQNEQSQAYIAIMTAVFALDGYKVDSS--QIMPI 323 Query: 310 VLITRDNFK 318 ++T ++F+ Sbjct: 324 TVVTAEDFQ 332 >UniRef50_C8P3T0 D-galactose-binding periplasmic protein n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P3T0_ERYRH Length = 360 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 58/337 (17%), Positives = 120/337 (35%), Gaps = 29/337 (8%) Query: 1 MHKF----TKALAAIGLAAVMSQSAM-------AENLKLGFLVKQPEEPWFQTEWKFADK 49 M K +L A+ L S+ + +G + + ++ + + Sbjct: 1 MKKLSKLILVSLLALTLFGCSSKGGAEGNANEGGKTYNIGVAIYKFDDNFMTLYREELAS 60 Query: 50 AGKDLG------FEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKAR 102 K++G +++ I+ D I++ A G + DP +I+ A+ Sbjct: 61 YFKEVGEKDGNTYKLDIQDGKQDQANQTEQINNFIAQGKDLIIANMVDPTAAGSIINSAK 120 Query: 103 GYDMKVIAVDDQFVNAKGK-PMDTVPLVMMAATKIGERQGQELYKEMQKRG---WDVKES 158 ++ V+ ++ + + + V AT+ G QG + ++ +G D S Sbjct: 121 AKEIPVVFINREPETQELEIWPGKTTYVGADATQSGTIQG-YMIANLENKGDIDGDGSVS 179 Query: 159 AVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPE 218 + + A++RT S+ L+ G + Q + D + + L Q Sbjct: 180 YITLMGDPANVDAKQRTEYSVKGLEEKGVKTNALAQPYQANWDTAKGQEFTANALEQFGN 239 Query: 219 VKHWLIVGMNDSTVLGGVRATEGQGFKAA-DIIGIGINGVDAVSELSKAQATGFYGSLLP 277 K ++ ND +G V A E G K DI +G++ + EL K G++L Sbjct: 240 -KLEVVFANNDGMAVGAVTAIEAAGRKVGEDIFVVGVDAIPDAIELLK--GGKLTGTVLN 296 Query: 278 SPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314 + + ++ + D V +T+ Sbjct: 297 DHFNQSHTAVDVALELLQGKDV--SAYYWHDYVGVTK 331 >UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IB16_CLOBU Length = 324 Score = 201 bits (513), Expect = 2e-50, Method: Composition-based stats. Identities = 56/315 (17%), Positives = 101/315 (32%), Gaps = 22/315 (6%) Query: 8 LAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDG 66 I V S++ + K+G +F+ + ++ G +I Sbjct: 26 CIYISSNGVYSENGVESKRKIGATYMTMNNSYFKIINEEIRYVVEENGDTLITRDPALSL 85 Query: 67 EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTV 126 +K + I I D + A+ + T Sbjct: 86 DKQIEEIYDFIDLKVDAIFINPVDWVGIRNALIDAQKAG----IIIIAIDTDIYDDDLTA 141 Query: 127 PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAG 186 V+ K G ++L + ++ + +A R G DA++ Sbjct: 142 CTVVSDNYKAGVLCAEDLM-------NKRNSANIILLEHKSAKSAIDRINGFEDAIRNN- 193 Query: 187 FPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA 246 ++ + A ++L++ +V I+ +ND + LGG+ A E + K Sbjct: 194 -KNFKVVARSDCDGQLETAMPVVENILLKQKDVDT--IMALNDPSALGGIMALEEKNIKG 250 Query: 247 ADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEV 306 I GI+G ++ K ++ SP G S E LYN K V Sbjct: 251 --INVYGIDGSPDGKKMVK--EDKMSATVSQSPRKIGRISGESLYNIFQGKEVDKKI--V 304 Query: 307 TDVVLITRDNFKEEL 321 V LIT++N E Sbjct: 305 VPVELITKENIDEFR 319 >UniRef50_Q3JM30 L-arabinose ABC transporter, periplasmic L-arabinose-binding protein n=105 Tax=Bacteria RepID=Q3JM30_BURP1 Length = 456 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 141/302 (46%), Positives = 200/302 (66%), Gaps = 2/302 (0%) Query: 26 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFV 85 +K+GF+VKQP++PWFQ EW+FA++A KD F ++KIA P GEK A+DSLAA A+G + Sbjct: 156 VKIGFVVKQPDDPWFQDEWRFAEQAAKDKHFTLVKIAAPSGEKVSTALDSLAAQKAQGVI 215 Query: 86 ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145 IC PD KLG I AKAR Y MK+++VDDQ V+ +G P+ VP + ++A +IG + G + Sbjct: 216 ICAPDVKLGPGIAAKARRYGMKLMSVDDQLVDGRGAPLADVPHMGISAYRIGRQVGDAIA 275 Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205 E ++RGW+ E V+ + ++L TAR RTTG++DALKAAGF + P + D GA Sbjct: 276 AEAKRRGWNPAEVGVLRLAYDQLPTARERTTGAVDALKAAGFAAANVVDAPEMTADTEGA 335 Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVD-AVSELS 264 F+AAN +H KHW+ G ND T +G VRA EG+G A D+I +GING A++E + Sbjct: 336 FNAANIAFTKHRNFKHWVAFGSNDDTTVGAVRAGEGRGIGADDMIAVGINGSQVALNEFA 395 Query: 265 KAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKK 324 K + TGF+GS+L +P +HGY +S +Y+W+ ++ PP +T LITR N K + Sbjct: 396 KPKPTGFFGSILLNPRLHGYDTSVNMYDWITQNRAPPPVV-LTSGTLITRANEKTARAQL 454 Query: 325 GL 326 GL Sbjct: 455 GL 456 >UniRef50_C7G6J4 Putative galactose ABC transporter, periplasmic galactose-binding protein n=3 Tax=Firmicutes RepID=C7G6J4_9FIRM Length = 383 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 55/308 (17%), Positives = 104/308 (33%), Gaps = 18/308 (5%) Query: 26 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE----VIKIAVPDGEKTLNAIDSLAASGA 81 K+G + Q + + + + GF I D ID+ G Sbjct: 78 KKVGVCIYQFSDNFMTLFRTELENYLVEKGFSKDNITIVDGANDQATQTGQIDNFITEGV 137 Query: 82 KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD----TVPLVMMAATKIG 137 +I + + I K + ++ ++ + + K V V A + G Sbjct: 138 DVLIINPVNSSSAATITDKVVAAGIPLVYINREPDEEEQKRWSDNNWDVTYVGCDARQSG 197 Query: 138 ERQGQELYKEMQKR---GWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194 QG+ + + K VM E A+ RT S+ AL+ AG E Sbjct: 198 TFQGEMISDLGLDTVDLNGNGKIDYVMVEGDPENVDAQYRTEYSVKALEDAGL-EVNCLS 256 Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA-DIIGIG 253 + A + L Q+ ++ ND+ LG ++A + G DI +G Sbjct: 257 DQVGNWQQDQAQQIVANALGQYGN-DVEVVFCNNDAMALGALQAIQSAGRTVGTDIYLVG 315 Query: 254 INGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLIT 313 ++ + L A G++ + +++ N++ D V +T Sbjct: 316 VDAL--SEALEDVLAGTMTGTVFNDHFSQSHSAADAAINYITGAGN--DHYIGCDYVKVT 371 Query: 314 RDNFKEEL 321 +DN ++ L Sbjct: 372 KDNAQDVL 379 >UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0CUK5_9CLOT Length = 336 Score = 201 bits (512), Expect = 3e-50, Method: Composition-based stats. Identities = 47/350 (13%), Positives = 100/350 (28%), Gaps = 53/350 (15%) Query: 1 MHKFTKALA-----AIGLAAVMSQSAMA-------------------------ENLKLGF 30 M K L A L ++ A + F Sbjct: 1 MKKMLACLLSFTILASTLTGCTVGASNATAAENQAPAETQASNEPAQAADPSVKTYNFVF 60 Query: 31 LVKQPEEPWFQTEWKFADKAGK---DLGFEVIKI-AVPDGEKTLNAIDSLAASGAKGFVI 86 +VK + + + A+ A ++ + I E+ + ++ GA +I Sbjct: 61 IVKSMQFSFMLSMIDGAEAAAALVPNINIKCIGPETPYSVEEQIQLVEQAITDGADAILI 120 Query: 87 CTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYK 146 D + KA + + N K D + + + +G G L + Sbjct: 121 TPADSTGIVPAIEKANAAGIPIAT-----PNTKAYGGDVLTWIGVDNYTVGYELGTALCE 175 Query: 147 EMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAF 206 ++ G V+ T+ R G +DA K +P ++ + Sbjct: 176 ALEGTGK-----VVLIEGTAGNSTSTERVDGYLDAFK--NYPGIELLDSQPADFNREKGM 228 Query: 207 DAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKA 266 + L ++PE+ + +N +G + A + G + + + + A Sbjct: 229 TVMENFLQRYPEIDG--VGSINKDMTMGAIEACKAVGRDKEMVQVT-FDVDNDCLDAIDA 285 Query: 267 QATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316 + + P+ + + L+T+DN Sbjct: 286 --GDILITGAQEEKSQIANAIYACLLACNGYKVAPE--QYIPMTLVTKDN 331 >UniRef50_Q2T4S7 L-arabinose ABC transporter, periplasmic L-arabinose-binding protein n=33 Tax=Proteobacteria RepID=Q2T4S7_BURTA Length = 340 Score = 201 bits (511), Expect = 3e-50, Method: Composition-based stats. Identities = 147/324 (45%), Positives = 206/324 (63%), Gaps = 4/324 (1%) Query: 6 KALAAIGLAAVMSQSAMAEN--LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV 63 A AA+ +A + +A + LK+GFLVK PE+ WF E K A G+ GF V+ I Sbjct: 18 AAFAALVIAPLAMPAATRADTPLKIGFLVKMPEQAWFINEQKAATALGQKEGFSVVNIGT 77 Query: 64 PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPM 123 PDGEK L AID+L + GA+GFVIC PD +LG AI A+A+ YDMK + VDDQ V++ GKP+ Sbjct: 78 PDGEKVLAAIDNLGSQGAQGFVICAPDVRLGPAIAARAKRYDMKFVTVDDQLVDSSGKPL 137 Query: 124 DTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALK 183 VP + M+ATKIG + GQ + EM+KRGW +E + +T EL TA+ RT G+ AL Sbjct: 138 ANVPHLGMSATKIGNQVGQAIADEMKKRGWKPEEVGALRVTNYELPTAKLRTDGATQALL 197 Query: 184 AAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQG 243 A+GF ++ I+ P K+ D G F AA +L +HP VK W+I +N+ TVLG VRATE Sbjct: 198 ASGFKKENIFDAPQKTTDDEGGFSAAAPVLARHPNVKKWVIFALNEETVLGAVRATEQLH 257 Query: 244 FKAADIIGIGINGV-DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302 AAD+IG+GING +A +E K + TGF+G++ S HG +S++ L +W+ PP Sbjct: 258 IPAADVIGVGINGAGEAFAEFQKKEPTGFFGTIAVSSTNHGKQSAQNLVDWIRSGKAPPA 317 Query: 303 FTEVTDVVLITRDNFKEELEKKGL 326 T+ T L+TR+N++ + G+ Sbjct: 318 DTQ-TSGKLMTRENWQAVRAELGI 340 >UniRef50_C6D2L0 Periplasmic binding protein/LacI transcriptional regulator n=10 Tax=Bacteria RepID=C6D2L0_PAESJ Length = 333 Score = 201 bits (511), Expect = 3e-50, Method: Composition-based stats. Identities = 54/349 (15%), Positives = 111/349 (31%), Gaps = 41/349 (11%) Query: 1 MHKFTKALAAIGLAAVMSQS--------------------AMAENLKLGFLVKQPEEPWF 40 M KFT L + VM + A + + + + K + ++ Sbjct: 1 MKKFTALLVVALMTVVMLSACGSNNSDGSSKSGTDNGGTKASGDKIYIPIISKGFQHQFW 60 Query: 41 QTEWKFADKAGKDLGFEVIKIAVPD---GEKTLNAIDSLAASGAKGFVICTPDPKLGSAI 97 Q A+KA + E+ +K + + + D + + Sbjct: 61 QAVKAGAEKAATEFNVEITFEGPETEAQVDKQIEMLQAALDKKPSAIGFAALDSQASVPL 120 Query: 98 VAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKE 157 + KA+ + VIA D + + ++ + + G Sbjct: 121 LQKAKAAGIPVIAFDSGVDSDIP-----ITTASTNNVAAAALAADKMAELIGGEGEIG-- 173 Query: 158 SAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHP 217 + + T R G ++ +K +P +I + D + D A +M+ HP Sbjct: 174 ---VIVHDQTSVTGVDRRDGFVNRIKE-KYPNIKIVDIQYGGGDHLKSTDLAKAMIQAHP 229 Query: 218 EVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLP 277 +K + G N+ + +G + A K I IG + A + K + G++ Sbjct: 230 NIKGF--FGSNEGSAVGVINAVTEL-KKEGQITVIGFDSGKAQIDAIK--SGVMAGAITQ 284 Query: 278 SPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKKGL 326 +P GY++ + + + T + N + K L Sbjct: 285 NPVGIGYETVKAAVEAIRGEKVESTID--TGFYYYDKSNIDSDEIKAVL 331 >UniRef50_UPI00016C56B8 bifunctional carbohydrate binding and transport protein n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C56B8 Length = 349 Score = 201 bits (511), Expect = 4e-50, Method: Composition-based stats. Identities = 66/335 (19%), Positives = 112/335 (33%), Gaps = 24/335 (7%) Query: 1 MHKFTKALAAIGLAAVMSQSAM-AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-- 57 M + L + + S A E + + K +Q+ + A++ DL E Sbjct: 1 MARVHLYLLLAAVLPIASGCARRGEEYTIVVIPKGLSHEHWQSVRRGAERCAADLEAEDG 60 Query: 58 ----VIKIAVP---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIA 110 VI D + + +D A+GA V+ +A V +A + V+ Sbjct: 61 TRVRVIFDGPLRERDALEQIRIVDRRVATGASALVLAPQHSATMTACVKRAADAGVPVVI 120 Query: 111 VDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDT 170 +D + P V V G G+ L +E+Q+R D K ++ A Sbjct: 121 IDSGLDD----PNHFVKYVATDNYNGGRLAGRHLIRELQRRRKD-KPKLILFRYAVGSQA 175 Query: 171 ARRRTTGSMDALKAAGFPEKQIYQVP-TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMND 229 R G D +K P + A A +++Q + I N+ Sbjct: 176 TEDRERGFEDEVKER-CPGAEWLSTDKYAGATRDSAMREAGPLILQFGN-QVDGIFAPNE 233 Query: 230 STVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEM 289 S+ G QG + + +G + L Q GS+L P GY S+ Sbjct: 234 SSASGTADVLRAQGLNQ-KVALMAFDGSKPL--LQSIQQGDVIGSILQDPYRMGYLSAWY 290 Query: 290 LYNWVAKDVEP---PKFTEVTDVVLITRDNFKEEL 321 + + + +E T LIT +N Sbjct: 291 CVRHLRGEDMNNGRREMSEGTGEYLITAENVTSAF 325 >UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1 RepID=B0P063_9CLOT Length = 326 Score = 200 bits (510), Expect = 4e-50, Method: Composition-based stats. Identities = 51/296 (17%), Positives = 103/296 (34%), Gaps = 21/296 (7%) Query: 25 NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKG 83 G +++ + G ++I D +K I L Sbjct: 44 KKLFGATYMTMNNEFYKIVNNQIRMQVEKNGDQMITLDPALDQKKQNEQIKQLVKRKVDA 103 Query: 84 FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143 + D K + A+ + VI +D Q + M V K G +E Sbjct: 104 IFLNPVDWKAVEPGLVAAKKAKIPVIVIDSQVYRSDLVAMTIV----SDNYKAGVLCAKE 159 Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203 + K+ ++ ++ +T N +A R G +D +K +I I Sbjct: 160 MMKQ-------KDQANIVLLTHNAARSAVDRINGFLDTIKNN--KNYKILASADTQGQIE 210 Query: 204 GAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSEL 263 A + ++ ++ + +++G+ND +G + A + +G + ++ GI+G +L Sbjct: 211 RALPKVDKIIEEYQNID--VVMGLNDPAAMGALAALDSKGAREG-VLVYGIDGSPEGKKL 267 Query: 264 SKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 K G+ SP + Y + + K V V +IT+ N ++ Sbjct: 268 IK--EGMMTGTAAQSPKQMADTAVNAAYQILQGEKVEKKK--VISVQMITKKNVEQ 319 >UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9BACT Length = 878 Score = 200 bits (510), Expect = 5e-50, Method: Composition-based stats. Identities = 46/321 (14%), Positives = 97/321 (30%), Gaps = 24/321 (7%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAG-KDLGFEVI 59 M + + L + +G + W + + + Sbjct: 3 MKQ-WLYILIFTLLFSACSDNNVKKYVIGVSQCSEDI-WRDKLNNELVMSTYQHDNVTLK 60 Query: 60 KIAVPDGEK-TLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 + D ++ I+ G ++ S+++ KA + VI D + + Sbjct: 61 FASANDNDRLQKQQIEQFIKEGVNLLIVSPNQIHTISSVIDKAYDAGIPVILFDRKTDSK 120 Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 K + + G G + +++ +G + A R G Sbjct: 121 K-----YTAFIGADNYEAGYEIGNFIGQQLDGKGNIAE-----ICGLQASSPAIERNRGF 170 Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238 MDALK + ++ A +S+L Q E + ND LG +++ Sbjct: 171 MDALK--DYSGIKVIARKHGDWVKESGVMAMDSVLSQAKEP-IQYVFAQNDRMALGALQS 227 Query: 239 TEGQGFKAADIIGIGINGVDAV-SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 + K I +GI+ + + + S + G ++ N + + Sbjct: 228 IKK--HKVKGIRIVGIDALPVPGGGMENVRDGNLEASYIYPTR--GDSVMQLALNIL--E 281 Query: 298 VEPPKFTEVTDVVLITRDNFK 318 +P K L+T+ N Sbjct: 282 KKPYKRDNYLKGALVTKANAN 302 >UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BF94_9GAMM Length = 319 Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats. Identities = 51/302 (16%), Positives = 110/302 (36%), Gaps = 21/302 (6%) Query: 19 QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPD---GEKTLNAIDS 75 Q+ + K+ ++K P++ + A +A +LG E+I + + E+ ++ ID Sbjct: 29 QATPVDKPKVLLVMKSLVNPFYIQMEQGARQAANELGVELIVRSGTNETLVEQQISLIDE 88 Query: 76 LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA--KGKPMDTVPLVMMAA 133 A+G VI D ++ +A +K++ +D++ + + +P V + Sbjct: 89 QLAAGIDALVIAPADSIAILPVLIRANELGVKIVNIDNRIDTNAIQRAGLPAIPFVSVDN 148 Query: 134 TKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIY 193 G G+ L + A++ AR R G+ AL+ ++ Sbjct: 149 EFGGYEAGKILAELAG-----PDAKALIIEGPRSAINARERRDGARRALQEN---NIEVV 200 Query: 194 QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIG 253 S + A+ ++ ++PE+ +I ND LG + + G D + G Sbjct: 201 ASEVASWKLESAYALTQNVHARNPELN--VIFAANDMMALGALLYAQEHGLN--DWLIAG 256 Query: 254 INGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLIT 313 + + + ++ D GY+ + + + +IT Sbjct: 257 FDNIPDARAAVR--EGRLAVTIDQQADRQGYQGVATAVDLLNDKAV--DDVVLVKTRVIT 312 Query: 314 RD 315 D Sbjct: 313 AD 314 >UniRef50_B5XZZ5 Sugar ABC transporter, periplasmic sugar-binding protein n=7 Tax=Enterobacteriaceae RepID=B5XZZ5_KLEP3 Length = 311 Score = 200 bits (509), Expect = 6e-50, Method: Composition-based stats. Identities = 56/322 (17%), Positives = 118/322 (36%), Gaps = 18/322 (5%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 M L A L A + AE + +V + P++ +E K A + + LG++ Sbjct: 1 MKLRITLLTAATLTAFSFAAHAAEKGTIMIMVNSLDNPYYASEAKGASEKAQALGYKTTV 60 Query: 61 IAVP-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 ++ D +K ID+ +G ++ D A + KA+ + V+ ++ + Sbjct: 61 LSHGEDVKKQNELIDTAIGKKVQGIILDNADSTASVAAIEKAKKAGIPVVLINREIPVDD 120 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 + + G ++M ++G + + + R+ Sbjct: 121 VALEQ----ITHNNFQAGSEVANVFVEKMAEKGKYAELTC-----NLADNNCVTRSKSFH 171 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 + +P+ + +S+L HP+VK ++ N LG + A Sbjct: 172 QVIDQ--YPDMVSVAKQDAKGTLIDGKRIMDSILQAHPDVKG--VICGNGPVALGAIAAL 227 Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 + D+I +GI+G + + KA +++ + L N++ K + Sbjct: 228 KAANRS--DVIVVGIDGSNDERDAVKA--GTLQATVMLQAQAIAAQGVTDLDNYLQKGEK 283 Query: 300 PPKFTEVTDVVLITRDNFKEEL 321 P K + +LIT+DN + Sbjct: 284 PAKQRVMFRGILITQDNADKVQ 305 >UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6VSM5_DYAFD Length = 904 Score = 199 bits (508), Expect = 7e-50, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 22/302 (7%) Query: 19 QSAMAENLKLGFLVKQPEEPWFQTEWKFADKA-GKDLGFEVIK-IAVPDGEKTLNAIDSL 76 + +GF ++ W + + ++I A + + I+ L Sbjct: 18 AGKQEDAYVIGFSQCTGDDEWRRAMLDGMQRELAFHNNTKLIFRDAHANSAVQVKQIEEL 77 Query: 77 AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136 +G ++ + + ++ KA + V+ VD + + V ++ Sbjct: 78 LRNGIHLLIVSPNESDPLTPVIEKAYKQGVPVVVVDRRTSSP-----YYTAYVGGDNYQV 132 Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196 G+ G+ + G + A R G +DAL P + Sbjct: 133 GKTVGEYAAALLGGNGKM-----IEITGLPRSSPASDRHRGLVDALATR--PSIRRVATL 185 Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256 A +L + P++ LI N+ +G F I IG++G Sbjct: 186 NGQWQKDIAKSELRKVLPRFPDLD--LIFAQNEVMAMGAREVCNDI-FPDRKIRVIGVDG 242 Query: 257 VDAV-SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315 + ++ + L G +++ + N + +P + + +I Sbjct: 243 LPGQFGDIQMVYDGHITATALYP--TGGEEAARVAMNIL--QKQPYQKENLLQTAIIDSS 298 Query: 316 NF 317 N Sbjct: 299 NV 300 >UniRef50_Q2YI92 Putative two-component system sensor histidine kinase n=1 Tax=unidentified microorganism RepID=Q2YI92_9ZZZZ Length = 511 Score = 199 bits (508), Expect = 8e-50, Method: Composition-based stats. Identities = 50/301 (16%), Positives = 96/301 (31%), Gaps = 24/301 (7%) Query: 20 SAMAENLKLGFLVKQPEEPWFQTEWKFADKAG-KDLGFEVIKIAVPDG-EKTLNAIDSLA 77 S + +G + W + + E+ A D E+ + IDSL Sbjct: 19 SQGGKRYTIGVSQCSEDI-WREKQNAELRMGAYFHDNVELKFAAAYDSDERQVQQIDSLM 77 Query: 78 ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137 G ++ S + +A + VI + + + K + ++G Sbjct: 78 NEGIDLLIVAPNQVNTISPAIDRAYDKGIPVIVFERKTGSQK-----YTAFISADNYEMG 132 Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT 197 G+ + + +G ++ + A R G MDA+K P ++ Sbjct: 133 HVMGEYIVSRLHGKGNVLEIKGLA-----GSSPAIERHNGFMDAIKDE--PGIKVVGSLQ 185 Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV 257 A + L + V L+ G ND T +G A + GI+G+ Sbjct: 186 GDWTEATACQKSKEWLAANEGVPVDLVFGANDRTAMGAREAL------GEKPLYCGIDGL 239 Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317 + + + P HG + ++ + P + + L+T DN Sbjct: 240 PGKNGGIQLVRDSLLDASFIYP-THGDQLMDLAIRILEGQ--PYEKETMLMSALVTHDNA 296 Query: 318 K 318 K Sbjct: 297 K 297 >UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RKK5_9CLOT Length = 350 Score = 199 bits (508), Expect = 8e-50, Method: Composition-based stats. Identities = 44/309 (14%), Positives = 105/309 (33%), Gaps = 23/309 (7%) Query: 17 MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV---IKIAVPDGEKTLNAI 73 E ++ +++ + + K ++ ++ + D ++ + Sbjct: 58 GPGGTSGEPAEVSVIIETFDNTFASFVMNAMKKYEEEHKDKIHITYLDSKQDANTQISQV 117 Query: 74 DSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAA 133 ++ +G + + D K IV + + +IA + F N V Sbjct: 118 ENQILNGTQAIICLAVDAKQSEPIVRACKEAGVPLIAFNRIFEN-------CDSFVGADG 170 Query: 134 TKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIY 193 G + ++ +G + +M + R ++ L +P+ Q+ Sbjct: 171 AVAGSLLARFTGEKTGGKGNVAIVNGIM-----GQENQFIRRDAIVETLGEM-YPDMQVV 224 Query: 194 QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIG 253 A + L ++ I+ +ND +G A E G K+ DII G Sbjct: 225 IEGAGDWKRDKALQLVETWLQSGTDID--AILCLNDDMAMGTQLAVEQAG-KSDDIIVCG 281 Query: 254 INGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLIT 313 +NG ++ + ++ +PD ++ E ++ + P+ + L+T Sbjct: 282 VNG--DPDGINAVRDGKIAATVFQNPDRQAEEALEAALQYIHGEK--PESKIMIPFELVT 337 Query: 314 RDNFKEELE 322 DN + ++ Sbjct: 338 ADNVDDYVQ 346 >UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6AR66_RHILS Length = 333 Score = 199 bits (508), Expect = 9e-50, Method: Composition-based stats. Identities = 49/337 (14%), Positives = 99/337 (29%), Gaps = 33/337 (9%) Query: 2 HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV--- 58 + A + + + A+ + +GF T K + +V Sbjct: 6 RRMLIISAGLATVLTAAPAFSADKIVIGFSQASSNSAHRNTMTKRNQAYAAEHFKDVDLI 65 Query: 59 IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 + A K ++ ++SL G K +I D + + + + VI ++ Sbjct: 66 VTNAEGKSAKQISDVESLMVQGMKVLMISAQDSAAIAPTIKQVLAAGIPVITLERSLD-- 123 Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 + V IG G+ + + ++ +G V + A R G Sbjct: 124 ----IPVTLHVGPHNKPIGTLAGKYIAEALKGKGN-----VVEIKGDPAVAPAVERHEGF 174 Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238 +A+ ++ D A L + P + + ND+ G +RA Sbjct: 175 AEAIAGTE---IKVIAETHADWDQEKALKFMEDTLQRFPAGQIQAVYAHNDNMAFGALRA 231 Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK-- 296 + G I+ IGI+G +A + + S + + Sbjct: 232 IQAAGRDKEGILIIGIDGENA--AIRAVAKGDLTATFTYSTV--APEGVIAAHALATNDT 287 Query: 297 ----------DVEPPKFTEVTDVVLITRDNFKEELEK 323 + +IT++N E K Sbjct: 288 AALEKLGTLTKKDDGSMEIEIASKMITKENAAEFFCK 324 >UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Tax=Proteobacteria RepID=B5XQK7_KLEP3 Length = 317 Score = 199 bits (507), Expect = 9e-50, Method: Composition-based stats. Identities = 59/320 (18%), Positives = 109/320 (34%), Gaps = 17/320 (5%) Query: 3 KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKI 61 + + + +A A + + +F K A A K G + VI Sbjct: 10 RLLAVATTMLASMSFISAASAAGPTYALVQINQQALFFNLMNKGAQDAAKASGKDLVIFN 69 Query: 62 AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121 + + +AI++ G KG ++ D V +A ++ VIA+D Sbjct: 70 SNDNPVAQNDAIENYIQQGVKGILVAAIDVNGIMPAVKEAAAANIPVIAIDAVLPAGP-- 127 Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181 V + + G GQ +QK ++ + + +R G + Sbjct: 128 ---QAAQVGVDNIEGGRIIGQYFVDYVQKEMGGQARLGIVGALNSAIQN--QRQKGFEET 182 Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241 LK+ P+ I V N A AA +++ +P++ I + +LG + A E Sbjct: 183 LKSN--PKITIANVVDGQNVQDKAMTAAENLITGNPDLT--AIYATGEPALLGAIAAVEN 238 Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301 QG DI G + +S L P+ G ++ L + + P Sbjct: 239 QGR-QKDIKVFGWD--LTAKAISGMDGGYVTAVLQQDPEKMGAEALNALNSITSGKTVPK 295 Query: 302 KFTEVTDVVLITRDNFKEEL 321 T + ++T+ N Sbjct: 296 --TILVPATVVTKANVDSYR 313 >UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Proteobacteria RepID=A5G0N2_ACICJ Length = 345 Score = 199 bits (507), Expect = 9e-50, Method: Composition-based stats. Identities = 54/285 (18%), Positives = 92/285 (32%), Gaps = 18/285 (6%) Query: 24 ENLKLGFLVKQPE-EPWFQTEWKFADKAGKDLGFE--VIKIAVPDGEKTLNAIDSLAASG 80 L +GF + P+ E K A K + A + + + ++++ G Sbjct: 54 SKLVVGFSQSESNANPFRAGETKSVRDAAKAFHVRRLIYTNAHSNQSRQVADVENMINQG 113 Query: 81 AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT-KIGER 139 A+ +I D A+A + ++ +D + A K D + + K GE Sbjct: 114 AQALIIAPLDSTGLQPAFAQAAAKHIPILTLDRR--TAGSKCSDYLSFLGSNFYFKQGEI 171 Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199 +EL K + A RT G LKA +P +I T + Sbjct: 172 DARELAKATGGHAMVAE-----IQGAYGNSVEVARTKGFAAGLKA--YPGMKIVTEQTGN 224 Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259 A + +L+ HP V + D+ G + A G K + + I+G Sbjct: 225 WFTTDAQKVMSQILLAHPNVN--AVYAQADTMAFGAITALRDAGKKPGQVKIVSIDGTR- 281 Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFT 304 + Y +P G + L NW P Sbjct: 282 -QGVQDIVDGWIYADDETNPR-FGPIAFHELQNWFDGKPVPRHIV 324 >UniRef50_A9GMT2 Put. D-ribose-binding periplasmic protein n=2 Tax=Bacteria RepID=A9GMT2_SORC5 Length = 340 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 51/300 (17%), Positives = 106/300 (35%), Gaps = 23/300 (7%) Query: 26 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTLNAIDSLAASGAK 82 L++ + K ++++ A KA ++L +V+ D + ++ + S A G Sbjct: 41 LRIAVVPKGTTHEFWKSVHAGAVKASRELDVDVVWKGPLREDDLKAQVDVVSSFVAQGVS 100 Query: 83 GFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQ 142 G V+ D A V AR + V+ D + V V G G+ Sbjct: 101 GIVLAPLDATALRAPVRAARQAKIPVVVFDSDLASDD-----HVSFVATDNEAAGRLAGE 155 Query: 143 ELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV-PTKSND 201 L K + + G V+ + + R G +DA++A P + Sbjct: 156 HLGKAIGEDGK-----VVVLRYQEGSASTQHREKGFLDAVRA--MPGVTVASENQYGGAT 208 Query: 202 IPGAFDAANSML--VQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259 AF + S+L + E + N+ST G ++A + +G + + Sbjct: 209 TESAFHKSESLLLAQRAAEGAIAGVFTPNESTTFGMLQALRKTNVAR-KVKFVGFDASEK 267 Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 + + ++ +P GY + + + + + + T ++TR + + Sbjct: 268 LLGALR--EGDIEALVVQNPFNMGYVAVKTMVAHLHGEKVAARID--TGSRVVTRQDLDD 323 >UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGW4_9BACT Length = 935 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 49/322 (15%), Positives = 96/322 (29%), Gaps = 24/322 (7%) Query: 1 MHKFTKALAAIGLAAVMSQSAMA-ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI 59 M + + + + +++ A +G + W G+ L +I Sbjct: 1 MKRKLHLIIYVAIIVLLTGCAQKPRKFVIGVSQCSEDI-WRDKLNDELKM-GEYLNDSLI 58 Query: 60 K---IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116 + D ++ G ++ S V +A + VI D + Sbjct: 59 VKLASSNDDNVLQNKQVNQFIDEGVDLLIVSPNQLSAISKSVERAYDKGIPVILYDRKTN 118 Query: 117 NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTT 176 + K + IG+ G + +++Q +G V A R Sbjct: 119 SDK-----YTAFIGCDNYTIGKSMGTFIAQQLQGKG-----RIVEISGLEGSSPALERHR 168 Query: 177 GSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 236 G MDA+K +P Q+ + G A +L Q + + ND G Sbjct: 169 GFMDAIKP--YPGLQVVASEEGNWKEEGGIQAMKRILKQTQDFD--YVFAHNDCLAWGAY 224 Query: 237 RATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296 A K + G++G+ + G + + P G + + + Sbjct: 225 VAARQMRVKR-NYKYTGVDGMATEGGGLELVRDGIFEASYLYPTK-GDEVIALAMKILKH 282 Query: 297 DVEPPKFTEVTDVVLITRDNFK 318 P + +IT+ N Sbjct: 283 Q--PYERDNYLSTSIITQANAA 302 >UniRef50_A6W303 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Marinomonas RepID=A6W303_MARMS Length = 325 Score = 199 bits (507), Expect = 1e-49, Method: Composition-based stats. Identities = 61/317 (19%), Positives = 126/317 (39%), Gaps = 26/317 (8%) Query: 4 FTKALAAIGLAAVMSQSAMAENLK-LGFLVKQPEEPWFQTEWKFADKAGKDLGFE----V 58 ++ A+ L+ ++SQS+ + LK +G V P+F + A ++L E + Sbjct: 28 LAVSVIAVSLSPLVSQSSEPQPLKSIGISVADLGNPYFVQLVETASVKAEELAGEPVKML 87 Query: 59 IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 I+ D ++ + I+ V+ D +A+VAKA+ +KVIAVD A Sbjct: 88 IRSDAYDWQRQIGQINDFIDQKVDLIVLTAADEYKVAAVVAKAQRAGIKVIAVDVNAQGA 147 Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 + + G ++L +++ +G V + V+ + R G Sbjct: 148 D-------ATITTDNVQAGAIACEKLAEKINYQGNFVIINGVLV------SSVIERVAGC 194 Query: 179 MDALKAAGFPEKQIY-QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237 AL +P+ + + + G +A ++ ++ + + +ND T G +R Sbjct: 195 KSAL--NKYPDITLLSDRMNGTGSVEGGMEAMTYLMEEYDHID--AVFTINDPTAFGALR 250 Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 A + K + + I+G +E+ K Q + + + P K+ E+ + + Sbjct: 251 AAQQANRK--EFVLASIDGAPFATEIIKQQDNPWIATAVQRPIPMAEKAIEIGMDLLKGK 308 Query: 298 VEPPKFTEVTDVVLITR 314 +F + LI + Sbjct: 309 EVAQRF-ILIPSTLIEK 324 >UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Streptomyces RepID=B4UZK6_9ACTO Length = 322 Score = 199 bits (506), Expect = 1e-49, Method: Composition-based stats. Identities = 53/301 (17%), Positives = 97/301 (32%), Gaps = 21/301 (6%) Query: 27 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTLNAIDSLAASGAKG 83 K+ + + P++ A GK G +V A D I +LA G Sbjct: 21 KIAIVTRNFTNPYWAALRDGAIAEGKKQGVKVEVQAGASETDSTGENAKISTLAGQGYNC 80 Query: 84 FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV--NAKGKPMDTVPLVMMAATKIGERQG 141 F + + + + ++ +D Q +K + + G++ G Sbjct: 81 FGVVPVNATNVITPLVPVAQRKIPILNLDTQIDANASKQAGVSYASFIGSDNLSAGQQAG 140 Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201 + L K M +G + R G + + + I D Sbjct: 141 EGLLKLMGGKGEVAILQGIA-----GEQNGINRQKGFTEKVAG----KLDIVATQPADYD 191 Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261 ++L HP++ I ND+ LG +A G + I ++G+ A Sbjct: 192 QAKGQTVTEAILKAHPKITG--IFAANDTMGLGAAQAVRNAGLT-GKVSIISVDGISAAL 248 Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEEL 321 E KA G++ P G + + + VAK P + + LI N + + Sbjct: 249 EAVKA--GTLSGTISQYPYAEGQLAVQACIDLVAKKKVPSRIVA--PIALIDSTNVDKAI 304 Query: 322 E 322 Sbjct: 305 S 305 >UniRef50_A0R773 Sugar ABC transporter substrate-binding protein n=1 Tax=Mycobacterium smegmatis str. MC2 155 RepID=A0R773_MYCS2 Length = 332 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 54/308 (17%), Positives = 105/308 (34%), Gaps = 18/308 (5%) Query: 9 AAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---PD 65 ++ L + ++ +K+G + K P+F + A G ++I +A D Sbjct: 19 GSLVLGMTACGGSGSDGVKVGLITKTDSNPYFVHLREAAQAQADKDGAQLIAVAGAFDGD 78 Query: 66 GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDT 125 E + AI+++ G KG +I + KAR + VIA+D Sbjct: 79 NEGQVTAIENMVGQGVKGILITPNSSTGVLDAIKKARDAGVVVIALDTATDPEDA----V 134 Query: 126 VPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAA 185 G QG+ + + + VM R G ++ Sbjct: 135 DATFATDNKAAGVAQGKWVKAALG----NTPPQVVMLDGTPGGTVDTFRHDGFLEGFGLT 190 Query: 186 GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK 245 +I + D A A ++L + P V + +N+ G +A + G Sbjct: 191 DNSP-EIVGQENTNGDQTKAQTAMENLLQRAPGVN--ALYTINEPAAAGAYQAIQAVGR- 246 Query: 246 AADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTE 305 A + I+G + ++ +A +++ P + + + +P F + Sbjct: 247 ADQVTIGSIDGS--CTGVADVKAGKIGATVMQFPAKMAELGVQAVVKFAEDGTKPSGFND 304 Query: 306 VTDVVLIT 313 T LIT Sbjct: 305 -TGSELIT 311 >UniRef50_B2JDH5 Periplasmic binding protein/LacI transcriptional regulator n=83 Tax=Proteobacteria RepID=B2JDH5_BURP8 Length = 321 Score = 199 bits (506), Expect = 2e-49, Method: Composition-based stats. Identities = 60/319 (18%), Positives = 103/319 (32%), Gaps = 24/319 (7%) Query: 3 KFTKALAAIGLAAVMSQSAMAENL--KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 + T A AA+ L + A A+ K+G ++ P+F T K + A +G V+ Sbjct: 20 RATLAFAAVMLGTPLLAPAAADAAPLKIGMTFQELNNPYFVTMQKALNDAAASIGATVVV 79 Query: 61 -IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 A D K ++ ++ + ++ D + V A+ A Sbjct: 80 TDAHHDVSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVTSAKK------AGAVVVAVDA 133 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 V G+ + L K + G V + + R G Sbjct: 134 NANGPVDSFVGSKNFDAGQMSCEYLAKAIGGSGE------VAILDGIPVVPILERVRGCK 187 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 AL FP ++ + A +M+ HP +K I +ND +G + A Sbjct: 188 AALAK--FPNVKVVDTQNGKQERATALSVTENMIQAHPNLKG--IFSVNDGGSMGALSAI 243 Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 E G DI ++G + + F + P + + Sbjct: 244 ESSG---KDIKLTSVDGAPEAITAIQKPNSKFIETSAQFPRDQIRLAIGVALAKKWGANV 300 Query: 300 PPKFTEVTDVVLITRDNFK 318 P T DV L+ +DN K Sbjct: 301 PK--TIPVDVKLVDKDNAK 317 >UniRef50_C5EPY5 ABC-type sugar transport system n=2 Tax=Clostridiales RepID=C5EPY5_9FIRM Length = 332 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 56/299 (18%), Positives = 102/299 (34%), Gaps = 17/299 (5%) Query: 26 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP--DGEKTLNAIDSLAASGAKG 83 L++GF + + PW + +A G + I E + I L Sbjct: 42 LRVGFSQIETDNPWRTAQINSFREALIPNGMDFIYHEPERYTVEWQVEDIHRLIREKVDY 101 Query: 84 FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143 VI D + ++ A+ D+ VI +D + L+ K G+ Sbjct: 102 LVIVPADLASLAPVLQDAKEADIPVILIDQSAETIDQSY--YISLISADYLKEGQICADL 159 Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203 L ++ D V A+ R+ G AL+ +P +I + + D Sbjct: 160 LAEKFG----DTPCRIVEIYGTESSPGAQARSKGFHQALQQ--YPNMEIIDIEYGNFDRV 213 Query: 204 GAFDAANSML--VQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261 A A + L + +D LG ++A + G I + ING+ V Sbjct: 214 TAQKAMENALIKASTSGQPIDAVFAHSDEDGLGALQAIKVAGLAPGRISIVSINGIQDVC 273 Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320 + A + G++ +P G+ + ++ P T + +IT +N E Sbjct: 274 KAI--IAGEYLGTVESNPR-WGFIVASLIQQKERG--YKPFPTVMIPYRIITAENAAEY 327 >UniRef50_B2SY92 Periplasmic binding protein/LacI transcriptional regulator n=7 Tax=Burkholderia RepID=B2SY92_BURPP Length = 317 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 59/314 (18%), Positives = 102/314 (32%), Gaps = 22/314 (7%) Query: 6 KALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVP 64 A A GL+ + + +A A LK+G ++ P+F T K + A +G V+ A Sbjct: 21 LATLAFGLSFIAAPAAQAAPLKIGMTFQELNNPYFVTMQKALNDAAASIGATVVVTDAHH 80 Query: 65 DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124 D K ++ ++ + ++ D + V A+ A Sbjct: 81 DVSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVTSAKK------AGVVVVAVDANANGP 134 Query: 125 TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA 184 V GE + L K + G V + + R G AL Sbjct: 135 VDSFVGSKNYDAGEMACEYLAKSIGGSGE------VAILDGIPVVPILERVRGCKAALAK 188 Query: 185 AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF 244 A P ++ + A +M+ HP +K + +ND +G + A E G Sbjct: 189 A--PGVKLVDTQNGKQERATALSVTENMIQAHPNLKG--VFSVNDGGSMGALSAIESSG- 243 Query: 245 KAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFT 304 DI ++G + + F + P + + P T Sbjct: 244 --KDIKLTSVDGAPEAIAAIQKPNSKFVETSAQFPADQVRIALGIALAKKWGANVPK--T 299 Query: 305 EVTDVVLITRDNFK 318 DV +I + N K Sbjct: 300 IPVDVKMIDKSNAK 313 >UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor histidine kinase n=1 Tax=Prevotella copri DSM 18205 RepID=D1PGX0_9BACT Length = 497 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 49/321 (15%), Positives = 104/321 (32%), Gaps = 23/321 (7%) Query: 1 MHKFTKALAAIGLAAVMS-QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAG-KDLGFEV 58 M + L + + ++ + +N+ +G W + +A + ++ Sbjct: 1 MKRINIILIVLSFSMLLLLGACTQKNVVIGVSQCCGG-VWREKVNNEMRQAQYQYKNVDL 59 Query: 59 IKI-AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117 + A DG+ IDS+ A V+ + + + +A + VI D + Sbjct: 60 LFTTAENDGQCQARQIDSMIARKVDLIVVAPDNVNDVTPAIERAYRAHIPVILFDRKVKT 119 Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177 + + G + L ++ +G + V + R G Sbjct: 120 P-----HYTASIGGDNVEAGREVARFLASKLDGKG-----TVVEITGLKDASPVIERHRG 169 Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237 + +K +P ++ + + A + L + + G +D +G Sbjct: 170 FHEVMK--NYPGIKVV-TLESNWKLERAQELMKQYLDKGGHADG--VFGHSDLGAIGAFL 224 Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 E +G ++ +GI+G+ E G + + P G K E+ N + Sbjct: 225 EAERRGID-KQMLIVGIDGLPGEWEGVDRVKRGQFAASYVYP-TQGEKIMELAMNILQGK 282 Query: 298 VEPPKFTEVTDVVLITRDNFK 318 P K V L T +N Sbjct: 283 --PYKKDNVMKSFLATPENCD 301 >UniRef50_C6L1I6 ABC sugar transport system, periplasmic protein n=1 Tax=uncultured bacterium RepID=C6L1I6_9BACT Length = 324 Score = 198 bits (505), Expect = 2e-49, Method: Composition-based stats. Identities = 55/318 (17%), Positives = 113/318 (35%), Gaps = 17/318 (5%) Query: 3 KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA 62 K T L A + AMA + + G L+K P++ + + ++ G A Sbjct: 5 KTTLKLGAAFATLLAVTPAMA-DGEYGVLMKTLANPFWGAMGQGVEAGAQEAGVAYYMQA 63 Query: 63 VPD---GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA- 118 V E LN +++ + + + A+ +KV+ +D A Sbjct: 64 VESDQAAEPQLNVCNTMLERNPVAMITAAINSTNLLPCLKSAQDAGIKVVDLDGNLDQAI 123 Query: 119 -KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177 + ++ + G + + + ++ G D ++ + T ++R +G Sbjct: 124 LDAEGIEITFRIGSDNVLAGAQGAEYVVSQL---GADATGPVLVIEGLSGNITGQKRASG 180 Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237 D L P +I D A + N +L ++P + I ND LG V Sbjct: 181 FADKLAELA-PGLEIVASLPGDWDRGKAANITNDILTRNPGL--VAIFAANDGMALGAVE 237 Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 + G K ++I +G++G + S+ P + G ++ E + V Sbjct: 238 SVFAAG-KGGEVIIVGVDGN--SDAVKSINEGRLTASVAQLPYLVGKQAVENVKIAVEGG 294 Query: 298 VEPPKFTEVTDVVLITRD 315 + +++T+D Sbjct: 295 EVAKEII--VPTLVLTKD 310 >UniRef50_A1WJI7 Periplasmic binding protein/LacI transcriptional regulator n=102 Tax=Proteobacteria RepID=A1WJI7_VEREI Length = 358 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 53/292 (18%), Positives = 99/292 (33%), Gaps = 19/292 (6%) Query: 14 AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKA--GKDLGFEV-IKIAVPDGEKTL 70 + K+G V + + Q K KD ++ + D Sbjct: 41 TGPALAQQAKKTWKVGAAVYGLKAEFAQLWVNALKKHPLVKDGTVKLTVFDGKYDALTQN 100 Query: 71 NAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVM 130 N +++ G + D + G+ V+KA ++ V+ + + + K + V Sbjct: 101 NQFETMITQKYDGILFVPIDLQAGADAVSKAAEANIPVVGSNGRVNSDK-----LLSYVG 155 Query: 131 MAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEK 190 G Q Q + M +G V+ R G++ L +P Sbjct: 156 SNDVIAGAMQAQAVVDAMGGKGN-----VVILEGPIGQSGQVERRQGNLSVLAK--YPNV 208 Query: 191 QIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADII 250 ++ ++ T + A + L H K I+G ND LG + A + +G I Sbjct: 209 KVLEMKTANWSRAEALSLTENWLTAHAG-KINGIIGQNDEMALGAIEAVKAKGLDPKTIP 267 Query: 251 GIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302 GI+G VS+ +A G S+L + ++L + P+ Sbjct: 268 TAGIDG---VSDAVRAVKAGIMASVLQDASAQSQGALDVLLRKLIGASYKPR 316 >UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5Z738_9FIRM Length = 369 Score = 198 bits (504), Expect = 2e-49, Method: Composition-based stats. Identities = 59/308 (19%), Positives = 106/308 (34%), Gaps = 29/308 (9%) Query: 23 AENLKLGFLVKQPEEPWFQTEWKFAD---KAGKDLGFEVI-----KIAVPDGEKTLNAID 74 LK+G + K +++ + K KD G +V D D Sbjct: 70 KGGLKMGAIAKSFSNEFWRNFKNGYEQSEKVLKDAGVDVSIKIDGTTDESDEIGQQTMTD 129 Query: 75 SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134 +L G ++ +A V A+G + I V+ G V A Sbjct: 130 NLVNQGYNALMLSPISDSNLTASVDNAKGKKIPTINVN------DGLIASADYFVGPDAY 183 Query: 135 KIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194 + GE + + K++ +G + I + AR RT G +K + Sbjct: 184 QNGELAAEWVSKQLGDKGDVA-----IVIGMAKAFAARERTAGFKGWIKDNN-SGLNVVA 237 Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254 D A + A++ + Q+P++K I ND LG V A E DI+ +G+ Sbjct: 238 EQNADWDRQKAKELASTWIQQNPDLK--AIFCNNDDMALGVVEAVEEA---KKDILVVGV 292 Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314 +G+ +A ++ ++E+ +A P T LI + Sbjct: 293 DGI--GEAYDSIRAGKLDATVDSFGYYMSQVATEVTLRVLAGQDIP--RVTHTPQALIDK 348 Query: 315 DNFKEELE 322 N ++ + Sbjct: 349 TNVDKDAK 356 >UniRef50_Q7CTE3 ABC transporter, substrate binding protein (Ribose) n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=Q7CTE3_AGRT5 Length = 309 Score = 198 bits (504), Expect = 3e-49, Method: Composition-based stats. Identities = 57/316 (18%), Positives = 114/316 (36%), Gaps = 14/316 (4%) Query: 6 KALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP- 64 K G+AA+++ + AE + ++ + K D K+LG EV+ ++ Sbjct: 3 KKTLFAGVAALIASAGFAEAKTVCYVTAADSHAYVTPANKAIDARAKELGVEVLSLSQNF 62 Query: 65 DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124 D + + I++ A A G ++ DP+ +AKA+ + V ++ Sbjct: 63 DVQTGVQQINTCIARKAAGIILWPLDPQAYIPGLAKAKAAGIPVNLINSPMN--DAAKPF 120 Query: 125 TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA 184 GE + L K + +G S V+ T R G LKA Sbjct: 121 VTSFTGPDVYSEGEMAAEALQKALDGKG-----SIVIIAGQAGNGTTIGRVDGFNAKLKA 175 Query: 185 AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF 244 G ++ D A A+ ++ + + K + +D+ G + A + Sbjct: 176 LGSK-IEVLDTVNADFDQQKALVASRDLITRFGD-KIAGVYANDDTMARGFIDAWKEAKS 233 Query: 245 KAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFT 304 A +GING + Y +++ SP G + + + + + Sbjct: 234 GKATPPIVGINGQKD--AFESIRNGEMYATIVQSPIEDGLLAINAMADVLNGKKIDAR-- 289 Query: 305 EVTDVVLITRDNFKEE 320 + ++T+ N ++E Sbjct: 290 LPIPLTVVTKANVEKE 305 >UniRef50_C4FY38 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FY38_9FIRM Length = 339 Score = 198 bits (503), Expect = 3e-49, Method: Composition-based stats. Identities = 62/331 (18%), Positives = 113/331 (34%), Gaps = 23/331 (6%) Query: 1 MHK-------FTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKD 53 M K F A+ + A +N+K+G + ++ + + +K K+ Sbjct: 1 MKKVITWCAIFCLFCLALVPSLSPKVQAEDKNIKIGVAFYKYDDAYMSSVRVALEKIAKE 60 Query: 54 L-GFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAV 111 E+I + D K + ID + G +I D A+V KA+ ++ ++ Sbjct: 61 HSNVELIVNDSQNDQAKQNDQIDVMIQKGVDVLLINVVDTGAAEAVVQKAKDANIPLVLF 120 Query: 112 DDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQ-----KRGWDVKESAVMAITAN 166 + + K D V A + G QG+ + + + R + K VM I Sbjct: 121 NREPATDVVKAYDKARFVGTTAKEAGIIQGKMIAELWKSDKKYDRNGNGKLDYVMLIGDP 180 Query: 167 ELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVG 226 E A RT ++D L A E + D A A ++ L + + +I+ Sbjct: 181 ENPEAIARTKYAVDTLTEAKI-EVNKLGDQVANWDPDKAKTATDAWLAKDAD-NIDVIIS 238 Query: 227 MNDSTVLGGVRATEGQG-----FKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDV 281 NDS G + A +G G I G++ + +L G++ + Sbjct: 239 NNDSMASGAIAALQGAGFNTDAKADKKIPVFGVDATEEAVDLIA--RGIMTGTVKQDAEG 296 Query: 282 HGYKSSEMLYNWVAKDVEPPKFTEVTDVVLI 312 + YN D + Sbjct: 297 MAKAVFALSYNAGQGKDFLDGTDYKYDDTQV 327 >UniRef50_B5GKD2 D-ribose ABC transporter permease protein n=1 Tax=Streptomyces sp. SPB74 RepID=B5GKD2_9ACTO Length = 432 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 58/312 (18%), Positives = 107/312 (34%), Gaps = 18/312 (5%) Query: 15 AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAI 73 S + +G P+F K K G EV+ A D K + + Sbjct: 136 GAASGGKGDGDYTVGMANFTLSGPYFVGMDKAVKARAKKKGVEVVSTDAGGDAAKLASNV 195 Query: 74 DSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAA 133 + L + +I + A++ + I VD +F + + Sbjct: 196 EDLLSKNVDAVIISGGPLESAPAVLNALKSAGKPAILVDRKFRSGT-----YASWIGPDN 250 Query: 134 TKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIY 193 IG + G+ L ++ K A++ + RTTG AL AAG + Sbjct: 251 EAIGRQDGEFLAAKLGK----DATVALIKGGPADNSIGLARTTGVKKALDAAGIRMVE-- 304 Query: 194 QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIG 253 + G S+L H ++ + ND+ LG RA + G + +I+ G Sbjct: 305 GPDYGNWASDGGLTVMESLLASHKDLD--AVFCENDAMCLGAQRAVKDAGRE-KEIVLAG 361 Query: 254 INGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLIT 313 ++G + A + + L D G + + + P+ V D +T Sbjct: 362 VDGQAEALQAIAA-GGNYLVTGLNDADQIGSLGLDRAVDILDGKK--PEKDTVVDSPQVT 418 Query: 314 RDNFKEELEKKG 325 ++N + + +G Sbjct: 419 KENAAKYQDMEG 430 >UniRef50_C9LY79 Periplasmic ribose-binding protein n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LY79_9FIRM Length = 342 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 50/299 (16%), Positives = 95/299 (31%), Gaps = 14/299 (4%) Query: 15 AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAI 73 + + +G+ + W +A +D G E+ A E + AI Sbjct: 31 GSAEPGSGNRKITMGYSQIGAQSTWRAAHTASIKQAAEDAGIELQFSNAELKQENQIRAI 90 Query: 74 DSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAA 133 S A ++ +A+ + VI VD + + + Sbjct: 91 RSFIAQKVDIIAFSPIVATGWDEVLKEAKAAKIPVIIVDRDLQTND--DSLYIMRIGTDS 148 Query: 134 TKIGERQGQELYKEMQKRGWDVKESA----VMAITANELDTARRRTT-GSMDALKAAGFP 188 + G + L MQ++G ++ + I + R G DA+ A+ Sbjct: 149 VREGREAFRWLDGYMQEKGKKPRDGGAKFNIAEIKGPAGSSVVERRDTGFRDAMTASPNK 208 Query: 189 E-KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA 247 + +I + G ML + + K ++ ND LG + A E G K Sbjct: 209 DAYEILVAQNSTFQKDGGKQVMTEMLKNYKD-KIDILFAQNDDMALGAIEAIEAAGLKPG 267 Query: 248 -DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTE 305 DI+ + +G A+ ++ +P + G EM +A + Sbjct: 268 QDIVIVSCDGTRAI--FQAMIDGKSNCTVEGNP-LQGPLLMEMAKKVLAGEKVERTVFV 323 >UniRef50_A9BGQ4 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BGQ4_PETMO Length = 342 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 49/309 (15%), Positives = 109/309 (35%), Gaps = 17/309 (5%) Query: 22 MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI---AVPDGEKTLNAIDSLAA 78 + ++ + F+VK E ++Q A KA G E I + + + ++ +++ + Sbjct: 40 QSSDMTIFFIVKASENEFWQIVLDGAQKAANHFGVEFIHQEATSESEVSRQVSILETAIS 99 Query: 79 SGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGE 138 + V+ + +A + VI +D + V + IG+ Sbjct: 100 TNPDAIVLAPTVADALVPGIERAMDSGIPVIIIDSMANTD-----NYVSFLGSDNYTIGQ 154 Query: 139 RQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTK 198 R EL K ++++ + + + R +G +D ++ A +P+ ++ V Sbjct: 155 RSADELAKALEEKNGSPSGKVAAITYMSGVGSLEARISGFLDRIEEA-YPDIEVVSVRDA 213 Query: 199 SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVD 258 + + +L +P++ N T VRA + QG D+ + ++ Sbjct: 214 MGQVGNTINITLDLLTAYPDLDGL--YANNQMTGDDMVRALDMQGRN--DLAAVAVDAS- 268 Query: 259 AVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318 E+ + L+ P V GY P T +++IT ++ Sbjct: 269 -AQEIWGLENGYLDSVLVQQPWVMGYAGVAYAVMARNG--VPLAKNVDTGILVITPESLA 325 Query: 319 EELEKKGLG 327 + Sbjct: 326 SGEADAAIN 334 >UniRef50_B2JP41 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Burkholderia RepID=B2JP41_BURP8 Length = 322 Score = 197 bits (502), Expect = 4e-49, Method: Composition-based stats. Identities = 53/299 (17%), Positives = 97/299 (32%), Gaps = 12/299 (4%) Query: 9 AAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGE 67 AA+ +AA ++ A + + LGF E W + KD G + A E Sbjct: 15 AALTVAASVNSFAGDKQITLGFSQVGAESAWRTANTVSVKTSAKDAGINLKFSDAQQKQE 74 Query: 68 KTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVP 127 + AI S A ++ +A+ + VI D V Sbjct: 75 NQIKAIRSFIAQKVDVIAFSPVVESGWEPVLTEAKNAKIPVILTDRSIDVKD--TSLYVT 132 Query: 128 LVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGF 187 ++ + G R G+ L + + + A R G M+ +K Sbjct: 133 MIGSDFLEEGRRAGRWLEERY--KNEAGPINIAELQGTVGSAPANDRHAGLMEVIKND-- 188 Query: 188 PEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA 247 P+ +I + + G + + + + ++ ND LG ++A E G K Sbjct: 189 PKFKIIASQSGDFTLAGGKQVMEAFAKTYGK-QINVVYAHNDDMALGAIQAMEEAGIKPG 247 Query: 248 -DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTE 305 D+ + + E A + SP + G + + + VA P + Sbjct: 248 KDVSVVSFDATKGGFEAM--IAGKINVDVECSP-LLGPQLMTAVKDVVAGKQLPKRIVT 303 >UniRef50_A8RTB0 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RTB0_9CLOT Length = 358 Score = 197 bits (501), Expect = 5e-49, Method: Composition-based stats. Identities = 48/298 (16%), Positives = 94/298 (31%), Gaps = 16/298 (5%) Query: 26 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGF 84 K+GF + W + K + G+E + A D K ++ ++ L Sbjct: 71 FKVGFSELAIDGAWRVAQVDSMQKEAESRGYEFVMSNAELDTAKQISDVEDLLTQDLDFL 130 Query: 85 VICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQEL 144 I D + + A+ + I +D + G +D + ++ GE L Sbjct: 131 FIAPIDMEAIMPAIEAAKAKGVPTILLDREANGTPG--VDYICTILSNYIWQGEACADWL 188 Query: 145 YKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPG 204 + G V R R G +K + +I + Sbjct: 189 SE----NGGADSYKIVQITGKVGGSDVRDRQAGFETGVKK--YENMEIVATQSGEWSRTE 242 Query: 205 AFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA-DIIGIGINGVDAVSEL 263 A +++ ++ ND LG V A + G D+ I I+G E Sbjct: 243 AQKVMQNIIQSTGG-DFNVVYCHNDEMALGVVLALKAAGMNPGTDVKVIAIDGQAEAVEA 301 Query: 264 SKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEEL 321 A +P G + + + ++ ++ + + +I N +E+L Sbjct: 302 I--IAGEMNCIATCNPR-FGPVAFDTMEKYLNEEKL--EHIINNEEYIIDSTNAEEKL 354 >UniRef50_B0P6G6 Putative uncharacterized protein n=2 Tax=Bacteria RepID=B0P6G6_9FIRM Length = 355 Score = 197 bits (501), Expect = 5e-49, Method: Composition-based stats. Identities = 52/338 (15%), Positives = 100/338 (29%), Gaps = 29/338 (8%) Query: 8 LAAIGLAAVM---SQSAMAENLKLGFLVKQPEEPWFQ----TEWKFADKAGKDLGFEV-- 58 + + S+S + +++G + + + + A ++ Sbjct: 22 CCLLLPSGCADKPSESMTPDPIRIGVTLYRQSDTFISLLASDLLDCAKARETQDNVKITL 81 Query: 59 -IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117 I + +D A G + D S I+ KAR D+ VI + + V Sbjct: 82 NILDGTGNQGTQNEQVDRFLAQGYDAICVNEVDRTAASVIIDKARAADIPVIFFNREPVG 141 Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQK------RGWDVKESAVMAITANELDTA 171 + V V + G+ QG+ + + R D + V+ A Sbjct: 142 EDMQRWQNVYYVGSDPREAGDMQGRIVVDLYDENPASVDRNGDGRIQYVILEGEPGHQDA 201 Query: 172 RRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEV--KHWLIVGMND 229 RT + AL +AG + + + A L E+ + +I ND Sbjct: 202 TLRTESCIAALTSAGI-DVEKLASEPANWQRAQASAKMAQWL-ADEELRDRIEVIFCNND 259 Query: 230 STVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEM 289 LG + A + +GI+ L Q G++ ++ Sbjct: 260 DMALGAIDAYHAAEISELPV-IVGIDAT--PPALMAIQDGSLAGTVRNDAQGQAQAIFDL 316 Query: 290 LYNWVAK----DVEP--PKFTEVTDVVLITRDNFKEEL 321 Y + P ++T N +E Sbjct: 317 AYALSTGANPQEAVPMLEGQYVWAPHSIVTIGNVMQEY 354 >UniRef50_UPI0001C31742 periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31742 Length = 356 Score = 197 bits (501), Expect = 5e-49, Method: Composition-based stats. Identities = 54/303 (17%), Positives = 103/303 (33%), Gaps = 21/303 (6%) Query: 23 AENLKLGFLVKQPEEPWFQTEWKFADKAGKDL--GFEVIKIAVPD--GEKTLNAIDSLAA 78 +G+ V W + A + E + D +K ++ + S+ + Sbjct: 44 GGKFTIGYDVYWLGNSWSTQLAEEFRAAAERNRDSIEKVVYTQSDNQVQKQISNVQSMIS 103 Query: 79 SGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGE 138 ++ P ++ +A + VI V + DT V G Sbjct: 104 RRVDAIIMTPISPSASVPVIQQANRAGIPVILV-----AGQADTRDTAAEVRADDIVFGR 158 Query: 139 RQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTK 198 + L +E+ RG + + T R G+ D +P+ ++ Sbjct: 159 TGAEWLVRELGGRGKIYVLNGL-----PGFSTDTLRWKGAKDVFDR--YPDIEVVADAHA 211 Query: 199 SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVD 258 + D A A ++ML HPEV + + LG ++A G + G NG+ Sbjct: 212 AWDTARAKTAVSNMLAAHPEVDG--VWSQGGAMTLGAIQAFRAAGKPLVPMTGENNNGLM 269 Query: 259 AVSE-LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317 V + L++A F + +P G ++ N + D + + + IT DN Sbjct: 270 KVWDSLNRAGDRRFDSIGVVNPTWVGSEALTQTLNLLRGDEV--RKVNLVNPAPITSDNL 327 Query: 318 KEE 320 + Sbjct: 328 ADY 330 >UniRef50_B5ZNU3 Periplasmic binding protein/LacI transcriptional regulator n=14 Tax=Rhizobiales RepID=B5ZNU3_RHILW Length = 329 Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats. Identities = 54/331 (16%), Positives = 106/331 (32%), Gaps = 17/331 (5%) Query: 2 HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGF---EV 58 FT A +A M ++ A ++ + +VK ++Q A KAGKDLG E+ Sbjct: 11 RAFTALAGAAVIATAMPVTSFAADVTIPIIVKDTTSFYWQIVLAGARKAGKDLGVNVPEL 70 Query: 59 IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 A D ++ +++ A VI + K + +A + +I +D Sbjct: 71 GAQAESDINGQISILENAVAGKPAAVVISPTEFKALGKPIDEAAKS-VPIIGIDS----- 124 Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 + + G L +++ + V+ + + +R G Sbjct: 125 GADSKAFKSFLTTDNVQGGRIAADGLAAAIKEMTGKEEGEIVILTNLPGVGSLEQRREGF 184 Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238 +D +K P ++ + ++ +P++ + N G +A Sbjct: 185 LDQIKT-KHPGLKVIADKYGDGQATTGLNMMTDLITANPKLVG--VFASNLILAQGVGQA 241 Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 + I IG + D K G ++ P GY + + Sbjct: 242 I-AENKLGDKIKVIGFDSDDKTVGFLK--DGAIAGLVVQDPYRMGYDGIKTALAVSKGEK 298 Query: 299 EPPKFTEVTDVVLITRDNFKEELEKKGLGGK 329 T L+T+ N + L K Sbjct: 299 VEANVD--TGANLVTKANMADPKIDALLNPK 327 >UniRef50_A9AWB1 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Bacteria RepID=A9AWB1_HERA2 Length = 333 Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats. Identities = 54/321 (16%), Positives = 103/321 (32%), Gaps = 18/321 (5%) Query: 6 KALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVP 64 + A+ +++ ++ L +GF E W + LG E+ + A Sbjct: 27 SGVGAVAPSSLDLKTKTYPELVVGFAQIGAESEWRTANTRSIQDTANQLGVELALSDAQQ 86 Query: 65 DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124 E + AI S A G + + A+ + + +I +D Sbjct: 87 QQENQIKAIRSFIAQGVDVIGVSPVVETGWDEVFAEVKQAGIPLILLDRNANVPDDLYSV 146 Query: 125 TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA 184 + + G R E+ + + +G + V+ R TG + L+ Sbjct: 147 R---IGSDFVEEGRRACGEMARLLDGQG-----AIVVLEGTQGSAPMIGRGTGFQECLQ- 197 Query: 185 AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF 244 +P I + + ++L +H + ND LG + A E G Sbjct: 198 -SYPALHIIDSQSGDFIRARGKEEMAALLQKHGN-SIDGVFAQNDDMALGAIEAIEEYGL 255 Query: 245 KAA-DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKF 303 + DI + I+ V A E ++ +P + G N P + Sbjct: 256 RPGVDIKIVSIDAVRAAFEAM--IDGKLNATIECNP-LLGPLFFATALNLANG--IPVEK 310 Query: 304 TEVTDVVLITRDNFKEELEKK 324 D + +D +EL K+ Sbjct: 311 WIKPDEGIYRQDTAAQELSKR 331 >UniRef50_C0C2G7 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM 15053 RepID=C0C2G7_9CLOT Length = 356 Score = 197 bits (501), Expect = 6e-49, Method: Composition-based stats. Identities = 46/304 (15%), Positives = 98/304 (32%), Gaps = 12/304 (3%) Query: 20 SAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEVI-KIAVPDGEKTLNAIDSLA 77 S + + +G + + + A K+ E I + D +N I++ Sbjct: 56 SGNKDKITVGATLSDFTISFQAAMYNELLDAQKEYDNIEFILQDGASDSALQVNQIETFI 115 Query: 78 ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137 G +I + KA + V AV+ + + T G Sbjct: 116 TQGVDAILINAV-SDAVEPSLKKAMEAGIPVFAVNRSITDENA----YSYFIGANDTLSG 170 Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFP-EKQIYQVP 196 E+ L + ++ + + R G + G+ I + Sbjct: 171 EQMANCLLDMI-EKDQMDSCNILYIQGVIGATYQTLRQGGFDSIMDEKGYDMGVNILERI 229 Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256 +D + +ML ++P + IV +G ++A + G +G++ Sbjct: 230 PCKHDKETVISSIQNMLNKYPAGEIDAIVCEGPDDAVGALQAVQSAGRTELVGKIVGMDM 289 Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP-PKFTEVTDVVLITRD 315 V + KA YG++L P + + + D + + TD+ ++T + Sbjct: 290 PTEVWDAIKA--GKIYGTVLQDPAEQCEVGIKTIETYFFGDKDSLKEKFIETDLPMVTSE 347 Query: 316 NFKE 319 N + Sbjct: 348 NVND 351 >UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_BACUN Length = 919 Score = 196 bits (500), Expect = 6e-49, Method: Composition-based stats. Identities = 57/318 (17%), Positives = 119/318 (37%), Gaps = 28/318 (8%) Query: 4 FTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAG---KDLGFEVIK 60 F + A + A ++G E+ W + + +D+ + I+ Sbjct: 10 FFLLVLWGVAVACSRREA---RFRIGVSQCS-EDEWRRQMNSEILREAHFYEDVEVD-IR 64 Query: 61 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120 AV D ++ I L A G ++ + + +V +A + VI VD + ++ K Sbjct: 65 TAVDDNDRQAKDIRELIAEGVDLLIVAPNEATPITPVVEEAYNRGIPVIVVDRKILSDK- 123 Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180 V +IG+ G+ + + +G V+ S ++ A R G + Sbjct: 124 ----YTAYVGADNYEIGKAVGEYVANVLHGQGDVVEISGLV-----GSTPAVDRHQGFVK 174 Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240 A+ A +P ++ V + A + +++L + P + L+ ND G A Sbjct: 175 AISA--YPGIRLLAVEDGAWLQLKAGEKMDTLLSRFPHID--LVYAQNDRMAAGAYAAAA 230 Query: 241 GQGFKAADIIGIGINGVDAVS-ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 +G + D+ IGI+ + + K A + + G + ++ + + K Sbjct: 231 REGRE-KDMRFIGIDALSGKDYGVEKVLAGELDATFIYP--TGGDRVMQIAMDILNKRDF 287 Query: 300 PPKFTEVTDVVLITRDNF 317 P + + ++ RDN Sbjct: 288 PRE--TILGTSVVDRDNA 303 >UniRef50_A8SGU5 Putative uncharacterized protein n=1 Tax=Faecalibacterium prausnitzii M21/2 RepID=A8SGU5_9FIRM Length = 356 Score = 196 bits (500), Expect = 6e-49, Method: Composition-based stats. Identities = 55/302 (18%), Positives = 106/302 (35%), Gaps = 11/302 (3%) Query: 28 LGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVI 86 +G + Q + + + KD+G+ V I D I++ G VI Sbjct: 61 IGVCIYQFADNFMTLYRADLEGYLKDMGYSVTIMDGKNDQNTQTEQINTFLQQGVDVLVI 120 Query: 87 CTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTV-PLVMMAATKIGERQGQELY 145 IV ++ ++ + + V A + G QG+ + Sbjct: 121 NPVQTTSAQTIVDTVSPSGTPIVFINREPEESVLDSYKGKCCYVGADARQSGTYQGELIL 180 Query: 146 --KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203 + D K + +M E A+ RT S+ AL A E + + D Sbjct: 181 ETETQGDINGDGKITYIMCKGDPENIDAQYRTEYSIKALTDAN-KEVECLYEYLDNWDQT 239 Query: 204 GAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK-AADIIGIGINGVDAVSE 262 A + L Q+ + K ++ ND+ LG +++ + G D+ +G++ + V Sbjct: 240 TAQQDVANALSQYGD-KIEVVFCNNDAMALGALQSIQQAGRTVGKDVYLVGVDAL--VEA 296 Query: 263 LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELE 322 + G++L K++E +V D V +T+DN + L+ Sbjct: 297 VQNVVDGNMTGTVLNDDVGQATKAAEATKLFVEGKDVEK--YYWVDYVKVTKDNASQYLK 354 Query: 323 KK 324 + Sbjct: 355 ED 356 >UniRef50_Q0BAE1 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Burkholderia RepID=Q0BAE1_BURCM Length = 321 Score = 196 bits (500), Expect = 6e-49, Method: Composition-based stats. Identities = 50/327 (15%), Positives = 108/327 (33%), Gaps = 12/327 (3%) Query: 1 MHKFTKALAAIGL--AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV 58 + K + A+G A+ + + A + L+ ++ K K G +V Sbjct: 3 LRKSILSCLALGTISGALSTGADAANQPHVALLMPTQSVEYWALYIKGFQKEAAADGLKV 62 Query: 59 -IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117 +K+ D + ++ A V+ D + K + ++ + Sbjct: 63 DVKVTNYDANEQATQVEQTLAQKPDVIVLVPVDSSAMVPSIRKIDQARIPLVISNSMP-- 120 Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177 + GE + + + +++G+ K ++ +R G Sbjct: 121 DQKYSRYWKVFTGPNDISNGEAAAKAMIQGFKEKGYGDKGKVIVINGPMGTPPQVQRYQG 180 Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237 +D LK P ++ D A AA+++ Q +VK + NDS + G V Sbjct: 181 FVDGLKKNA-PGIEVVGAQPADWDAVKAEAAASALFTQFKDVKG--VYTENDSQLRGVVT 237 Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297 A + G + + ++ +G E A Y ++ SP G +++ Sbjct: 238 AAQRLGLEPSKLVIVGHGCDAGGVEAISA--GKAYATVEQSPFDDGAYAAKAALELATGK 295 Query: 298 VEPPKFTEVTDVVLITRDNFKEELEKK 324 P+ + + T+ +K Sbjct: 296 T--PRAVQYLPNPIATKATTNVCYSQK 320 >UniRef50_A9HN30 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Alphaproteobacteria RepID=A9HN30_GLUDA Length = 335 Score = 196 bits (500), Expect = 6e-49, Method: Composition-based stats. Identities = 45/307 (14%), Positives = 89/307 (28%), Gaps = 20/307 (6%) Query: 20 SAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG--FEVIKIAVPDGEKTLNAIDSLA 77 ++ +GF +EP+ + K+ VI + ++ +++ Sbjct: 44 CGPNKSYVIGFSQANFKEPYRAHVDHELQRLVKNYPQFKLVIADGQANDNTQVSQVENFL 103 Query: 78 ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137 + + + V+ + VI +D + K V I Sbjct: 104 TQQVDILFVSAFEAAPLTPAVSAVYDKGIPVIELDRRTTGEK-----FTSFVSGDNRAIA 158 Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT 197 G + G + A R G + P+ +I V Sbjct: 159 HEAGLYAASLLPDGGDVA-----ILEGLPSSSPAIERLEGFKAGISTN--PKVKIIAVQP 211 Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV 257 A + ++ML HP++K L+ ND G A + G K + IG +G+ Sbjct: 212 VDWMQDKAVEVFSAMLQAHPDIK--LVYTSNDLAAAGAYIAVKQAG-KLGQVKIIGTDGL 268 Query: 258 DAVSELSKAQ-ATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316 S +A + + + ++ ++ + I N Sbjct: 269 PGPSGGIRAVAEGQWTATYVYP--TGAAEALDLAKKILIDCASSVPRLVTVPTQRIDASN 326 Query: 317 FKEELEK 323 KE K Sbjct: 327 AKELYAK 333 >UniRef50_A5V1R8 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Roseiflexus RepID=A5V1R8_ROSS1 Length = 334 Score = 196 bits (500), Expect = 7e-49, Method: Composition-based stats. Identities = 47/324 (14%), Positives = 102/324 (31%), Gaps = 16/324 (4%) Query: 5 TKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEVIK-IA 62 A + + ++G EPW Q A E+ A Sbjct: 21 LAACTQPTSSPGGAGGDAPRRWRIGMSQANNAEPWHQAMNAQIAAAAARHPNIEIEFTDA 80 Query: 63 VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122 + + + +++ + G +I + + IVA A + VI +D + + Sbjct: 81 RQNNAQQIADVEAFLSKGIDLLIISPNEASPLTPIVASAFQRGIPVIVLDRKVKGEQ--- 137 Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182 + IG + G+ + +++ + + + R G + + Sbjct: 138 --YTMWIGADNRLIGRKAGEYTARWCREQ-QRSPCTVIELRGLEGSTPTQERGDGFREGI 194 Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242 A P+ +I A A + +P+V ++ ND + + Q Sbjct: 195 AAN--PDVRIIASQNADWLAERADALARVLFEANPDVD--VVYAHNDPMGIAAFNVAKEQ 250 Query: 243 GFKAADIIGIGINGVDAVS-ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301 G I+ IGI+ + + + + + G ++ E + + PP Sbjct: 251 GRDTDAILFIGIDALATSDGGIQAVRQGKLNVTYVYP--TGGAEAIEWALRILEQRETPP 308 Query: 302 KFTEVTDVVLITRDNFKEELEKKG 325 + + D +T N +K G Sbjct: 309 REIIL-DTEEVTTANADAMFQKYG 331 >UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodobacter sp. SW2 RepID=C8S5N2_9RHOB Length = 349 Score = 196 bits (500), Expect = 7e-49, Method: Composition-based stats. Identities = 56/304 (18%), Positives = 104/304 (34%), Gaps = 23/304 (7%) Query: 20 SAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAI---DSL 76 A K+G + K ++++ + LG E + A L + ++L Sbjct: 51 PVPAAGTKVGGVSKTLTNEYWRSLGEGYANVATKLGIEFVYQAAQSEGDQLGQLAIAENL 110 Query: 77 AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136 + G + V A + V+ V+D + + V Sbjct: 111 ISQGFNALLFSPQTDANLIPAVEAATAAGVPVLNVNDAVIPSAAN------YVGNVQKGN 164 Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196 G G + + A +RT G + + A G + ++ Sbjct: 165 GVNVANWFIANRPDGGKVA-----VIEGQPGVYAAGQRTAGFTETITAGG--KFEVVASV 217 Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256 + AF+AA+++L Q+P++ + ND LG V A + G KA + G +G Sbjct: 218 PANWSREEAFNAASTILQQYPDLIGF--YANNDGMALGVVEAVKAAG-KAEQVAVFGTDG 274 Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316 + +A G++ P + G + E+ +A P T LIT+DN Sbjct: 275 ISDAYAAVRA--GDLTGTVDSFPVLTGEIAMEVALRLMAGQDLP--RVVATPQALITKDN 330 Query: 317 FKEE 320 + Sbjct: 331 VETY 334 >UniRef50_A7II12 Periplasmic binding protein/LacI transcriptional regulator n=42 Tax=Bacteria RepID=A7II12_XANP2 Length = 347 Score = 196 bits (499), Expect = 8e-49, Method: Composition-based stats. Identities = 57/328 (17%), Positives = 111/328 (33%), Gaps = 25/328 (7%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 M + + A+ +G ++K P+F + A+ A LG E+ Sbjct: 9 MAASVAWAGLAATSPAGAAEKPADKPIVGIVIKTSTNPFFVKMKEGAEAAAARLGLELRS 68 Query: 61 IAV---PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117 A D + + A++SL A+GAKG +I D + ++ +AR + VIA+D Sbjct: 69 FAGKMDGDTDAQVTAVESLIAAGAKGILITPSDSRAIVPVLEQARAKGILVIALDTPLD- 127 Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177 P G+ G+ K + K A++ + N++ R G Sbjct: 128 ---PPGAADATFATDNVLAGKLVGEWAAKTLGANAKSAK-VALLDLNVNQISVDVDRDQG 183 Query: 178 SMDALKAA--------GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMND 229 + + +I + G A ++L + P V ++ +N+ Sbjct: 184 FLKGFGVNVADPAVIGDEKDSRIVGHDVTLGNEEGGRRAMENLLQRDPYV--SVVYAINE 241 Query: 230 STVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEM 289 G A G D++ + ++G + + + + P E Sbjct: 242 PAAAGAYEALRSIGRD-KDVLVVAVDG--GCPGVRNVKDGVIAATAMQFPLAMAQMGVEA 298 Query: 290 LYNWVAKDVEPPK----FTEVTDVVLIT 313 + + +P T V L+T Sbjct: 299 VLKYATDGTKPKPADGQDFVNTGVELVT 326 >UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette transporter, binding protein n=2 Tax=Corynebacterium glucuronolyticum RepID=C0VSF4_9CORY Length = 306 Score = 196 bits (499), Expect = 8e-49, Method: Composition-based stats. Identities = 60/327 (18%), Positives = 109/327 (33%), Gaps = 30/327 (9%) Query: 1 MHKFTKALAA--IGLAAVMSQS---AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG 55 + K L A + L+ A + + + + P+F A +LG Sbjct: 2 LRKSLVLLTAGILTLSGCSGTPRDVPAAGSRAVTLALSTEKNPFFLQVRYGAQAKANELG 61 Query: 56 FEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQ 114 ++ + A D E +D +SG V+ D + + V++ + I VD Sbjct: 62 IDLTVLDAGDDAEVQAAQLDD-VSSGVA--VVNPADSEALAPAVSQLNEKGIPAITVDRT 118 Query: 115 FVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRR 174 A L+ T+ G L K ++ +G ++ ++ R Sbjct: 119 ITGAD-----VAALIDSNNTEGGAAAASVLAKAIRAQGE-----VIVLRGIEGSSSSAER 168 Query: 175 TTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLG 234 G A+ A P +I D A D +L HP+V I ND LG Sbjct: 169 YEGFTQAM--AEHPRVRIVAAEAADFDRDTARDLVTDLLADHPDVAG--IFAENDEMALG 224 Query: 235 GVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWV 294 V A D+ +G +G + + + ++ G + E + Sbjct: 225 AVDALGE--RAGKDVKVVGFDGTE--EGVRAVKNRKLVATIAQQSSELGATAIEQAGKLL 280 Query: 295 AKDVEPPKFTEVTDVVLITRDNFKEEL 321 + T V+++TRDN ++ Sbjct: 281 DGEAAES---VHTPVMVVTRDNIEKYR 304 >UniRef50_A9AWB0 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AWB0_HERA2 Length = 332 Score = 196 bits (499), Expect = 1e-48, Method: Composition-based stats. Identities = 56/338 (16%), Positives = 103/338 (30%), Gaps = 33/338 (9%) Query: 3 KFTKALAAIGLAAVMSQSA-------------MAENLKLGFLVKQPEEPWFQTEWKFADK 49 + L +GLA + SA ++ L + E W + Sbjct: 10 RLMALLVIVGLAGCGASSAPTTAPDAPATGAKTYSDMVLCYPQLGAESDWRTANTASIKE 69 Query: 50 AGKDLGFE--VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMK 107 LG + V A E ++A+ + G + A++ +A+ + Sbjct: 70 TAATLGIKQLVFSDAQQKQENQISAVRACIQQGVDVIALPPVVEDGWDAVLTEAKNAGIP 129 Query: 108 VIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANE 167 VI VD K + GER E K M G + + Sbjct: 130 VIIVDRSVSADKSLYS---THIGSNMVLEGERAAAEFNKMMPNGG-----AILELSGTTG 181 Query: 168 LDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQH-PEVKHWLIVG 226 A R G + L + I T + A ++L ++ P I Sbjct: 182 SGAAVGRAKGLRNKLNS----NITIIDSQTGNFTRAEAVPVMQALLKKYTPGTDFQGIFI 237 Query: 227 MNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKS 286 ND +G + + G K D+ + ++G F + +P + G + Sbjct: 238 HNDDMGIGVIEVLKAAGIKPGDLKIVSVDGTRG--GFQAMVDGWFQADVECNP-LLGPQV 294 Query: 287 SEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKK 324 E+ + P+ +T+ + +N E L + Sbjct: 295 FELALKLMNGQPVEPEV--ITNETVYYPENAAELLPTR 330 >UniRef50_Q0SII4 ABC ribose transporter, substrate-binding component n=1 Tax=Rhodococcus jostii RHA1 RepID=Q0SII4_RHOSR Length = 322 Score = 195 bits (497), Expect = 1e-48, Method: Composition-based stats. Identities = 53/319 (16%), Positives = 104/319 (32%), Gaps = 26/319 (8%) Query: 5 TKALAAIGLAAVMSQSAMAEN--LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKI 61 T +AA + A S + ++ +G + P+F E + + A + EV ++ Sbjct: 23 TALIAAGTMTACTSGTGAGDDGTTTIGVTLNAASNPFFLAEGQAIETAAAEKRVEVSVQY 82 Query: 62 AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121 A D + ID+ ++ D + +A ++ V+AVD + A Sbjct: 83 ANADVAVQSDQIDTFIRQKVDSIIVDAVDSDGIGPALLRATQANIPVVAVDVTAIGAD-- 140 Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181 V + G L +++ G V + + R G +A Sbjct: 141 -----ATVTSDNVQAGREACTYLVEQLGGSGK------VAIVDGAAVSAISDRMQGCREA 189 Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241 L A P ++ A + A+++L +P+V + G+ND T +G A + Sbjct: 190 LDA--HPGIEVVATQRADLTRDKAMNVASTILTANPDVDGF--FGVNDPTAIGISLAAQQ 245 Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301 +G + A + + P G ++ + Sbjct: 246 KGVDVKVVG-----VDGAKQLTDLLGKSSIIATSGQDPAQLGRSGLDIAVRLAGGEKV-D 299 Query: 302 KFTEVTDVVLITRDNFKEE 320 + VL+T D Sbjct: 300 SAPTLIPTVLVTADTITAY 318 >UniRef50_C6CXV0 D-galactose/D-glucose ABC transporter, periplasmic D-galactose/D-glucose-binding protein n=15 Tax=Firmicutes RepID=C6CXV0_PAESJ Length = 366 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 51/323 (15%), Positives = 99/323 (30%), Gaps = 20/323 (6%) Query: 15 AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAID 74 A+ + +G + + ++ + + A + + I + + +D Sbjct: 48 TAAESPAVKKEPTVGVAIYKFDDTFMTGVRNAIEAASQGVAKVDIVDSQNSQPTQNDKVD 107 Query: 75 SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134 I D S I+ KA+ + V+ + + + D V V A Sbjct: 108 LFITKKYNAMAINAVDRTAASMIIDKAKSANTPVVFFNREPLAEDMNKWDLVYYVGAKAE 167 Query: 135 KIGERQGQELYKEMQ-----KRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPE 189 + G G+ + + + D K +M A RT S+ A+ AG Sbjct: 168 ESGTMSGELIIDYWKAHPEMDKNKDGKLQYIMLKGEPGHQDAELRTKYSIQAITDAGI-G 226 Query: 190 KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQG--FKAA 247 + T D A D + L H + K ++ ND LG + A + G Sbjct: 227 VEKLAEDTAMWDRVKAQDKMATFLSAHGD-KIEAVLANNDDMALGAIEALKAAGYFKDGK 285 Query: 248 DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV--------- 298 + +G++ A L G++L G + ++ + Sbjct: 286 FMPVVGVDATAA--ALQALSEGTLLGTVLNDAKNQGAATLKLAAALANGETPSKVNTGFD 343 Query: 299 EPPKFTEVTDVVLITRDNFKEEL 321 IT+DN + Sbjct: 344 ITDSKYVWVPYKKITKDNMSDAQ 366 >UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional regulator n=6 Tax=Proteobacteria RepID=A1AYL7_PARDP Length = 348 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 54/300 (18%), Positives = 102/300 (34%), Gaps = 23/300 (7%) Query: 24 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---PDGEKTLNAIDSLAASG 80 E ++G + K ++++ + G + A D L+ +++ G Sbjct: 54 EGTQIGGVSKALTNEYWRSLGEGYKNMTDAQGVGLAYQAAPSEGDQLGQLSIAENMILQG 113 Query: 81 AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140 +G ++ + A + V+ V+D + + V G R Sbjct: 114 YQGLLVSPQTDNNLQPAMETAASRGIAVVNVNDAVIPS------ATQYVGNVQRDNGVRV 167 Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSN 200 Q G + A +RT G + AG Q+ + Sbjct: 168 AQWFIDNRPGGGKVA-----AIEGQPGVFAAGQRTDGFTTTITEAG--NFQVVASVPANW 220 Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260 A+DAA+++L QHP++ + ND LG V A + + G +G+ Sbjct: 221 SREQAYDAASTILQQHPDLIGF--YANNDGMALGVVEAVKAANL-QEQVSVFGTDGI--P 275 Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320 + +A G++ P + G + E++ +A P T LIT DN + Sbjct: 276 DAYASIRAGDLTGTVDSFPVLTGEVAMEVVLRLLAGQGIP--RVVATPQALITADNVADY 333 >UniRef50_B5CR03 Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC 29176 RepID=B5CR03_9FIRM Length = 332 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 53/297 (17%), Positives = 98/297 (32%), Gaps = 20/297 (6%) Query: 23 AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGA 81 E GF P++ T A ++ G ++ IK D E+ I L Sbjct: 47 QEKKVFGFCGIDMSNPFYATLKDSVQSALEEQGDKLLIKDPAGDAERQNTQIQELIEEDV 106 Query: 82 KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141 +C D K + D+ VI +D + + V G G Sbjct: 107 DAVFLCPVDWKKIEPALDALEEADIPVINLDTKVYESG----KVAAFVGSDNRNAGYVCG 162 Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201 ++L + G V+ + +++ R TG +A+ F ++ + ND Sbjct: 163 EDLVERKPDGGQ------VVIVENLNVNSVCERITGFEEAVSKGAF---EVVKRIQTGND 213 Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261 + G +L Q+P++ I+ +D A G + ++G A Sbjct: 214 VSGLKQQVAQVLAQNPDLD--AIMCGDDQMAEQVREAITEAG--QEKVYVYSVDGSPASK 269 Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318 + G G SP G K+ ++ + + + + I RDN + Sbjct: 270 KALVEHTGGMMGIGAQSPINLGKKAVKIANAVLNGEDYEKE--TYEETFFINRDNVE 324 >UniRef50_C3MI97 Putative solute-binding component of ABC transporter n=1 Tax=Rhizobium sp. NGR234 RepID=C3MI97_RHISN Length = 327 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 47/338 (13%), Positives = 103/338 (30%), Gaps = 33/338 (9%) Query: 2 HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADK--AGKDLGFEV- 58 F A+AA + +A E +++ L + + A K+ E+ Sbjct: 5 RTFIAAIAASTMLLGADLAAAQEKIRIAALSFGEAGEYMKAWSTEIQNHPAVKEGKVEIT 64 Query: 59 IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118 + D N ID+ ++ D + + + KA + VI Sbjct: 65 VFDGKYDPLIQANQIDTALTQQFNAIIMAPFDLEASAPAIDKAAEAKVPVI-----VSAL 119 Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178 K + +++ + G +E+ K + G V+ R G Sbjct: 120 KTSSKNYTASIIVDDREGGRIIAEEMAKRLPSGGNL-----VLMEGPIGQSAQIERRAGV 174 Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238 L+A ++ + + + L +P+ + ++ ND LG + A Sbjct: 175 DAGLEA--HSNLKLLADKSGNWSRAEGQALMENWLSAYPD-QINGVLAENDEMALGAIEA 231 Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 + + + I I+G+ + +L G + ++ V Sbjct: 232 MKAANVDLSKVPVIAIDGIPDAK--RAVENGEMAVTLYKYARAEGQGAVDLALRQVIGTE 289 Query: 299 EPP---------------KFTEVTDVVLITRDNFKEEL 321 P + V +++ +DN K+ + Sbjct: 290 YKPQSEVWNGLMEWKDGTQKDYVVPWLILDKDNVKKYM 327 >UniRef50_C5EQH1 D-allose-binding periplasmic protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EQH1_9FIRM Length = 356 Score = 195 bits (497), Expect = 2e-48, Method: Composition-based stats. Identities = 54/307 (17%), Positives = 104/307 (33%), Gaps = 22/307 (7%) Query: 24 ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK---IAVPDGEKTLNAIDSLAASG 80 + K ++K ++ WK + G +V + D E L ++S G Sbjct: 63 SDKKYAVILKTQATDFWVKMWKGVEAETAVKGVKVDLYSAQSEDDLEGQLTILESCIQQG 122 Query: 81 AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK--GKPMDTVPLVMMAATKIGE 138 G I + +A + ++ VD++F + + V V +G Sbjct: 123 YDGIAIAPLSGVNVLPGIGEATAKGITIVDVDEKFDETELANQGGACVAFVATDNVAVGA 182 Query: 139 RQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTK 198 + Q + + + + ++ RT G+ A I Sbjct: 183 KGAQYIVDTAGEGAKVA-----IIEGKSGNQSSEDRTQGAKQAFTDGK---MDIISSQAA 234 Query: 199 SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVD 258 D A D A++++ Q+P++K I ND LG V+A K +I+ +G +G Sbjct: 235 DWDRQKAMDIASTLIQQNPDLKG--IYCCNDGMALGAVQAVINAN-KLGEIMIVGTDG-- 289 Query: 259 AVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP----KFTEVTDVVLITR 314 +S ++ P G S ++L V + + VL+T Sbjct: 290 DAEAVSSIANNELSATVAQDPAQIGATSLDLLIEAVESGKKGEVGTFPEKTPVESVLVTA 349 Query: 315 DNFKEEL 321 +N + Sbjct: 350 ENAADFQ 356 >UniRef50_B1LAH5 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Thermotoga RepID=B1LAH5_THESQ Length = 343 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 60/334 (17%), Positives = 106/334 (31%), Gaps = 43/334 (12%) Query: 18 SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA--VPDGEKTLNAIDS 75 S +E++ + K P++ A + LG + I A D K I S Sbjct: 15 SVFVFSEDMTILLAPKSLNNPYWFAVENGMKDAAEKLGIKAIFDAPVEADAAKQAEKILS 74 Query: 76 LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135 G G I DP+ +V +A + VI D ++ + Sbjct: 75 YIVKGVDGIGISPNDPEGIKVVVKRALDKGIPVIMFDSDSPDSG-----RYAYIGTNNYN 129 Query: 136 IGERQGQELYKEMQK-RGWDVKESAVMAITANELDTARRRTTGSMDALK---AAGFPEKQ 191 G G+ + + ++K R + R G DAL+ E Sbjct: 130 AGYEAGKLMAQLIEKYRAEKKTIRLAILTGGLAALNLNERIRGFKDALEDYSKRSGKEIV 189 Query: 192 IYQVP-TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDS--------TVLGGVRATEGQ 242 P +D A + ++ ++ W + G + LGG Sbjct: 190 YVADPFPCDDDSAKAIQIIRDVTRKYTDLDGWFMSGGWPLFAPKETVISALGGPE----- 244 Query: 243 GFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA------- 295 + D++ +G + + + EL +A G + P GY S +LYN Sbjct: 245 --RMKDLLVVGFDTL--LPELELVKAGAVKGLVGQRPYDMGYLSVLVLYNMAKIGVENTL 300 Query: 296 -------KDVEPPKFTEVTDVVLITRDNFKEELE 322 K+ + T V ++T +N + E Sbjct: 301 KMLPKVVKEDGTVDYIIDTGVDIVTEENVDQFYE 334 >UniRef50_A1STY3 Transcriptional regulator, periplasmic binding protein of LacI family protein n=1 Tax=Psychromonas ingrahamii 37 RepID=A1STY3_PSYIN Length = 334 Score = 195 bits (496), Expect = 2e-48, Method: Composition-based stats. Identities = 48/297 (16%), Positives = 104/297 (35%), Gaps = 20/297 (6%) Query: 23 AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---PDGEKTLNAIDSLAAS 79 + + ++K P+F+ + A +A KDLG ++ ++ + + L Sbjct: 51 QDKHTIALVMKTLTNPFFKEMERGARRAEKDLGINLLVKTAAQETSIQQQIGIVADLIEL 110 Query: 80 GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA--KGKPMDTVPLVMMAATKIG 137 VI D I+ A+ + VI +D+ K + VP + + Sbjct: 111 KVDALVIAPGDSVELIPILKHAQDKGIIVINIDNLLDQEYSKKVGLLNVPFISVDNELAA 170 Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT 197 + + L +++ + A R G++ A + F + + Sbjct: 171 YKSTKVLTEKL-----TQPTEVAIIEGIRGALNAELRKNGAIRAFSESKF--ATLVATES 223 Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV 257 + I AF+ A + ++P + I ND LG + + G ++ + + + Sbjct: 224 ANWKIDEAFELAAKLYNKNPNI--GAIFCANDMMALGVIEYLQSTGK--DNVQVVAFDAI 279 Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314 L+ Q+ ++ GY+ N ++ P K T + +IT+ Sbjct: 280 --PQALNAVQSGVLLATVDQDAAEQGYQGILSANNILSGKKTPLKIT--IEAKIITK 332 >UniRef50_A1WJM2 Periplasmic binding protein/LacI transcriptional regulator n=5 Tax=Proteobacteria RepID=A1WJM2_VEREI Length = 330 Score = 194 bits (495), Expect = 2e-48, Method: Composition-based stats. Identities = 59/307 (19%), Positives = 113/307 (36%), Gaps = 19/307 (6%) Query: 26 LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLAASGAKGF 84 K+G +K P+F + + A GK+LG+EV+ A +K ++ ++ L G K Sbjct: 36 FKIGVSMKTLSAPYFAAQMEAAKARGKELGYEVLATDAQGKLQKQISDVEDLVTRGVKLL 95 Query: 85 VICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQEL 144 +I D + V A +KV+ +D + V V + + G G + Sbjct: 96 IINPADSEGLVNAVNNASANGVKVVVIDSTLN----PRANFVTQVQSSNSINGALVGHWV 151 Query: 145 YKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAA-----GFPEKQIYQVPTKS 199 +E+ + + + R G + + A G + + Sbjct: 152 IEEVGNK----SLKIALLSGEKGNPVGQERRLGVLSGIIEAQLRKFGKADLTVVGQGWGH 207 Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259 + G A +LV + ++ +++G NDS VLG RA E G ++ + Sbjct: 208 WNDEGGLKAMEDLLVANKDIN--MVLGENDSMVLGARRAIESAGRT-GILLVAAADAQKE 264 Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319 L K + + L P + + ++ V +V+ +T IT+ N + Sbjct: 265 ALALIK--QGKYGVTGLNDPALVARTAIDLGVKVVKGEVKDVPKQTLTTPAAITKGNVDK 322 Query: 320 ELEKKGL 326 K + Sbjct: 323 FYNPKAV 329 >UniRef50_A1WNV9 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Proteobacteria RepID=A1WNV9_VEREI Length = 374 Score = 194 bits (495), Expect = 3e-48, Method: Composition-based stats. Identities = 63/327 (19%), Positives = 127/327 (38%), Gaps = 21/327 (6%) Query: 4 FTKALAAIGLAAVMSQSAMAENL--KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IK 60 +AA+ LAA + A A N+ K+G++ W+Q K GKDLG EV ++ Sbjct: 36 LFIPVAAVTLAATFAAPAQARNMPRKIGYVTNYATHEWYQNVIKGMKAHGKDLGIEVEVQ 95 Query: 61 IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120 A D K + A + A G +I + + ++ KA+ ++ V+ + Sbjct: 96 DANLDIAKQVAAAEDFIAKGVDVLIITPVNEEGVVPLLRKAKAANIPVVLEGNPVKGMTT 155 Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180 G G+ K++ VM + L R+ G MD Sbjct: 156 MVAICDYDTG---YFSGIEAGKYAKKKLGGTAK------VMNVGLPLLSATVLRSKGFMD 206 Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240 ++ P + + A + +++ L ++ ++ I G+NDS+ LGG++A + Sbjct: 207 GIRTV-IPGATMVHDLDGGGNPDRALEVSSAALAKNADINI--IYGINDSSSLGGLQAWK 263 Query: 241 GQGFKAADIIGIGIN--GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298 G +++ +G G+ ++ + K + ++ P+ GY + + ++ Sbjct: 264 AAGKSQDNLLTVGTGGEGLAFINAIEKEPSYRIEAAMF--PEKEGYTAIDAAVKLFNQEK 321 Query: 299 EPPKFTEVTDVVLITRDNFKEELEKKG 325 P + D++K+ G Sbjct: 322 VPQHIVS--PTAPMNGDDWKKYYSYDG 346 >UniRef50_B9JQE2 D-ribose-binding periplasmic protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JQE2_AGRRK Length = 334 Score = 194 bits (494), Expect = 3e-48, Method: Composition-based stats. Identities = 57/344 (16%), Positives = 104/344 (30%), Gaps = 37/344 (10%) Query: 2 HKFTKALAAIGLAAVMS--QSAMAENLKLGFLVKQPEEPWFQTEWKFADKA-GKDLGF-- 56 + GL + A + +K+G V + + Q K G Sbjct: 6 RTTLAIIGGAGLLPIAGKVGFAADKPVKVGAAVYGLKNEYAQIWAAEIKKHPAFANGIAE 65 Query: 57 EVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116 + D + D +A + D ++ KA ++ V+ Sbjct: 66 LTVFDGNYDHATQASQFDLMATQHYDVAIYIPIDSYAAKGVIHKAALKNLPVVG-----S 120 Query: 117 NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTT 176 N K + V + G+ + + L+K + +G V+ I RT Sbjct: 121 NGPAKSDELVSFIGSDDVAAGQYEAETLFKAIGDKGN-----IVVLIGPEGNLGQELRTE 175 Query: 177 GSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 236 G+ AL A + + + T + A + L H K ++ ND LG + Sbjct: 176 GNKKALDAN--KDITVLERKTANWSRSEAMVLMQNWLTSHKG-KINGVLAQNDEMGLGAI 232 Query: 237 RATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296 A + G I +GI+GV + Q+ S+ + ++ V Sbjct: 233 AAMKAAGIDPKTIPVVGIDGV--TDAVRAVQSGDMILSIRQDAQTQAQGAVDIALRRVIG 290 Query: 297 DVEPP-----------------KFTEVTDVVLITRDNFKEELEK 323 D P +T++N E L+K Sbjct: 291 DSYQPLAECWKKYPQMAWGNGTDKLYSVPWTYVTKENAAEFLQK 334 >UniRef50_A6BKA3 Putative uncharacterized protein n=6 Tax=Clostridiales RepID=A6BKA3_9FIRM Length = 355 Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 49/336 (14%), Positives = 116/336 (34%), Gaps = 22/336 (6%) Query: 5 TKALAAIGLAAVMSQSAMAENL-KLGFLVKQPEEPWFQTEWKFADKAGKDLG------FE 57 L A + +S +++ ++G + ++P+ + K + Sbjct: 24 VILLIAFLITGCEDKSVKRDHIIRIGVVTYTQDDPFINAMTDQLKENLKKMETDLMKIIT 83 Query: 58 VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117 +K + + ++ + +G + D S I+ A+ D+ V+ + + V Sbjct: 84 TVKNGDDNQQDQNEIVEEMIDAGCDVLCVNLVDRTAPSRIIRMAKQEDIPVLFFNREPVR 143 Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQ-----KRGWDVKESAVMAITANELDTAR 172 + + + A + G QG+ + ++ + D K ++ A Sbjct: 144 EDLMQWEKLYYIGCNAEQSGIMQGEIVADYIKNHPEVDKNQDGKIQYILLEGEAGHQDAI 203 Query: 173 RRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTV 232 RT S+ L G + + + A + + ++ Q+ + + L++ ND Sbjct: 204 SRTDYSVKTLLEQGI-DLEKLSYQFADWNRGQAENRMSRLIEQYGD-EIELVISNNDEMA 261 Query: 233 LGGVRATEGQGFKAADIIGI-GINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLY 291 LG V A + G+ + I GI+G+D E K G++ + + +++ Sbjct: 262 LGAVAAWQKAGYDCRNWPVIFGIDGLDDALEAIK--TGKMKGTVYNDKEDQAMELAKLSV 319 Query: 292 NWVAKDVE-----PPKFTEVTDVVLITRDNFKEELE 322 V V++ + N L+ Sbjct: 320 EIVCGKDTNRKHLKEGRYYVSEYCRVDSSNVDHFLK 355 >UniRef50_C1D9L7 RbsB protein n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D9L7_LARHH Length = 330 Score = 194 bits (494), Expect = 4e-48, Method: Composition-based stats. Identities = 56/307 (18%), Positives = 110/307 (35%), Gaps = 22/307 (7%) Query: 14 AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGE--KTL 70 A S ++ ++K P P+F A +A + G ++ IK+A D + + Sbjct: 34 AFSQSAGQNTSPARIVLVMKSPTNPYFSELANGASRAQLETGIDLSIKVAHEDDALEQQI 93 Query: 71 NAIDSLAAS-GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN--AKGKPMDTVP 127 ID + A A VI D ++A+AR + VI + ++ M VP Sbjct: 94 RLIDEVIAKHQADAIVIAPTDSIRLVPVLARARKAGIHVINIGNRLEPRIVALYGMPVVP 153 Query: 128 LVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGF 187 L+ + + +L + + + + + R+RT G++ A AG Sbjct: 154 LISIDNASAAYQVAGKLAEGLPRGSKVA-----IIEGLLGTNNTRQRTEGALQAFSEAG- 207 Query: 188 PEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA 247 ++ + A+ +L +P+++ I ND LG R +G Sbjct: 208 --LRVVAKQSARWKGDEAYQVTAQLLRDYPDLR--AIFCSNDMMALGAARYLREKGITG- 262 Query: 248 DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVT 307 + G +G+ + ++ GY + + + +A P + Sbjct: 263 -VRLAGFDGITEARSALHQRQ--LVATIDQHASEQGYLAVRLAVDAIAGR--PLAEETLV 317 Query: 308 DVVLITR 314 D L+T Sbjct: 318 DTELLTA 324 >UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC 27756 RepID=A5KKL8_9FIRM Length = 325 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 56/342 (16%), Positives = 117/342 (34%), Gaps = 38/342 (11%) Query: 1 MHKFTKALA------AIGLAAVMSQSAMAENLK-------------LGFLVKQPEEPWFQ 41 M K A+A + A S+S + K + V + + Sbjct: 2 MKKKMLAVAVCVSMCMMAFAGCTSESGGGSDKKAEQTEGKKEESGKVFMTVSNQQNEFMV 61 Query: 42 TEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAK 100 + + G+ G+EV + A D K ++ I++ + A+ ++ + + + Sbjct: 62 GMAENFKEVGEAAGYEVQLMDADLDATKQVSQIETAISENAEAILVEPCSVDGLTTGLKE 121 Query: 101 ARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAV 160 A + V + + L+ + + GE + +++ K+ + Sbjct: 122 AHDAGIPVFVIHNNVSATD----LVTSLIHVDVRQGGELKMEQVIKDCGEDAKIA----- 172 Query: 161 MAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVK 220 + DT + G L+ +P ++ + A A + L E+ Sbjct: 173 IMTGTLGQDTTNQICGGYDAVLEK--YPNVEVVFEGAGNWGATDAAPLAENWLASGKEID 230 Query: 221 HWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPD 280 IV ND LG V + G K+ I G++ + L + ++ Sbjct: 231 --AIVCNNDGMALGVVSVLKSAG-KSEQIKVYGLDATN--EGLKAVDSGEMAATIYVDSK 285 Query: 281 VHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELE 322 K+ EML + A ++ VL+T++N KE ++ Sbjct: 286 AEIEKAFEMLEDLKAGKKVDAEYK--VPSVLVTKENVKEYMK 325 >UniRef50_B8ZUE5 Putative D-ribose-binding protein n=2 Tax=Mycobacterium leprae RepID=B8ZUE5_MYCLB Length = 345 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 61/323 (18%), Positives = 107/323 (33%), Gaps = 19/323 (5%) Query: 4 FTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIA 62 L L A + L +G P++ +F D+ LG + A Sbjct: 16 LILGLLPAILPACGFSESHH-KLTIGVSYPTANSPFWNAYTRFIDEGSHQLGVYINAVSA 74 Query: 63 VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG-- 120 D +K L+ +++L G G ++ + ++ A ++ V+ VD A G Sbjct: 75 EEDEQKQLSDVETLINQGIDGLIVTPQSTSIAPTLLRIATQANIPVVVVDRYPGYAPGQN 134 Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180 K D V + K G + L + + A+ R G Sbjct: 135 KNADYVAFLGPNNEKAGSGIAEALMAGGGSK-------FLALGGMPGNSVAQGRKAGLES 187 Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240 AL A G ++ Q + AA +ML HP I ND G ++A Sbjct: 188 ALTAVGH---RLVQFQYAGDSEDKGLAAAENMLQAHPAGDANAIWCFNDKLCQGAIKAVY 244 Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300 + I G+D + A G Y L + + G +LY + +P Sbjct: 245 NANREKEFI----FGGMDLTPQAIAAIENGLYTVSLGAHWLEGGFGLAILYRKIHGQ-DP 299 Query: 301 PKFTEVTDVVLITRDNFKEELEK 323 + D++ + + N + + Sbjct: 300 AERMVKLDLLKVDKSNVAKFKAR 322 >UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S3L7_9CLOT Length = 378 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 52/311 (16%), Positives = 107/311 (34%), Gaps = 20/311 (6%) Query: 15 AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK---IAVPDGEKTLN 71 A+ + K+G L+ ++ T ++A +DLG E+ A D + L+ Sbjct: 79 ALGELPKSGQGEKIGVLISSTSNEFWGTMKTRYEEAAEDLGIEIRVFEADAEDDTQGQLD 138 Query: 72 AIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA--KGKPMDTVPLV 129 A++++ G ++ D + A ++ VI + + Sbjct: 139 ALNTMVTMGFDAIILSPIDGTNLIPGIVAANEAEIPVINLGPGVDAEALADAGGHLDGKI 198 Query: 130 MMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPE 189 + + G ++ M+ G + + RT G+ + Sbjct: 199 TVNFEEQGSTVANDMISRMEDGGKVA-----ILAGLEGAGQSVGRTNGAKTVFENTE--G 251 Query: 190 KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADI 249 ++ D A++A +L HP++K I ND+ L V+A + G K D+ Sbjct: 252 VELVAAQACDWDTEKAYEATKDILTAHPDLKG--IFACNDNMALAAVQALQEMGNK--DV 307 Query: 250 IGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDV 309 + G++ + GS+ S ++ + EM V + Sbjct: 308 MVYGVDYTTDAKAAI--EDGTMMGSMTYSSAIYTKAAEEMAMLIVQGKTFKDPVY--LPL 363 Query: 310 VLITRDNFKEE 320 L+T+DN + Sbjct: 364 TLVTQDNVADF 374 >UniRef50_B2JTD1 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Burkholderia phymatum STM815 RepID=B2JTD1_BURP8 Length = 322 Score = 194 bits (493), Expect = 4e-48, Method: Composition-based stats. Identities = 74/327 (22%), Positives = 114/327 (34%), Gaps = 20/327 (6%) Query: 1 MHKFTKALAAIGLAAVMS---QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE 57 M K K L IGLA M+ A A+ + LG++ + P+ + + A K G + Sbjct: 1 MKKCFKKLGLIGLAGAMAFMTDVAAAKEITLGYVAAGMQYPFNVAAARGFEAAAKAAGVK 60 Query: 58 VIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116 I A EK NA+D L A G + D + + V +A +++ +AV Q Sbjct: 61 TIVLDAKTSVEKQGNAVDDLIAQKVDGIAVLPIDAVVAQSWVERATSHNIPFVAVATQIG 120 Query: 117 NAKGKPMDTV-----PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTA 171 + + ++ V LV +G Q K + D + A T Sbjct: 121 DPQKHAINDVYPKLTALVASDEVHVGTDAAQIAAKLLP---KDRTAKIAIVEGAPGYPTV 177 Query: 172 RRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDST 231 + T G + L AG QI ++LV HP+V LI D Sbjct: 178 WQVTKGFKEGLDKAGVK-YQIVASQPTDWTPEKGESVCQNILVAHPDVD--LIFNQADDM 234 Query: 232 VLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLY 291 V+G RA G A + G K G++ P G ++ + LY Sbjct: 235 VIGCARAVRAAGSHA---KLVSRGGSKLGINAVKV--GDVDGTVCIQPGKMGERAFKALY 289 Query: 292 NWVAKDVEPPKFTEVTDVVLITRDNFK 318 V P D +T+ Sbjct: 290 AAVTDPNAPKAKFIDVDTPQVTKATLS 316 >UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI family n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JQF4_AGRRK Length = 337 Score = 194 bits (493), Expect = 5e-48, Method: Composition-based stats. Identities = 46/347 (13%), Positives = 93/347 (26%), Gaps = 39/347 (11%) Query: 1 MHKFTKALAAIGL----AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFAD---KAGKD 53 M K A L A+ A A+ K+ +V+ + A Sbjct: 3 MTKRALLGATTVLCLLGTALTGAPAYAKTFKIAAIVQSLNTEYNVLWADAAKSHPALADG 62 Query: 54 LGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD 113 + D N D+ + D G+ + +A+ + V + Sbjct: 63 TATLTVLDGRQDVLTQSNLFDTAITEKYDAIIFIPVDIDAGNEPIERAKAAGIPVFGSNT 122 Query: 114 QFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 173 + + + GE + + + K V+ + Sbjct: 123 VVSKTE----LYDAYINSNDVEAGEMLAKAVIDKAGKDAK-----VVVLEGMLGQSAQVQ 173 Query: 174 RTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVL 233 R G + LK I + T + A + L H + + ++ ND + Sbjct: 174 RLEGINNVLKQNS--GVTILEQNTANWSRAEAITLMENFLTSHGD-QVQGVLAENDEMAV 230 Query: 234 GGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNW 293 G + G + G++G+ E K S+L + ++ + Sbjct: 231 GAIEGIRNHGLDPKKLPVAGVDGIKDALEAVK--RGEQTMSILQDASGQSQGAIDLALSK 288 Query: 294 VAKDVEPP------------------KFTEVTDVVLITRDNFKEELE 322 + D P + + +T DN + L Sbjct: 289 LVGDTYKPRAKVWDTNGGKLAWNGGKEEHYYVPWLAVTSDNVDKVLA 335 >UniRef50_C6C3I7 Periplasmic binding protein/LacI transcriptional regulator n=6 Tax=Proteobacteria RepID=C6C3I7_DICDC Length = 311 Score = 193 bits (492), Expect = 7e-48, Method: Composition-based stats. Identities = 58/322 (18%), Positives = 122/322 (37%), Gaps = 18/322 (5%) Query: 1 MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60 M + L A +A+ + AE + LV + P++ +E K ADK ++LG++ Sbjct: 1 MKLRSMLLTAAITSALSLTAHAAEKGTIMILVNSLDNPYYASEAKGADKKAQELGYKTTV 60 Query: 61 IAVP-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119 ++ D +K ID+ +G V+ D A + KA+ + V+ ++ + Sbjct: 61 LSHGEDVKKQSELIDAAIGKKVQGIVLDNADSTASVAAIKKAKAAGIPVVLINREIPVDD 120 Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179 + + + G ++M ++G + + + + R+ Sbjct: 121 VALVQ----ITHNNFQAGSDVANVFVEKMGEKGKYAELTCSL-----ADNNCVTRSKSFH 171 Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239 L +P + +S+L HP+VK ++ N LG + A Sbjct: 172 QVLDQ--YPGMASIARQDAKGTLIDGKRIMDSILQAHPDVKG--VICGNGPVALGAIAAL 227 Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299 + G D++ +GI+G + + K +++ + L N++ K + Sbjct: 228 KAAGRN--DVVVVGIDGSNDERDAVK--EGSLKATVMLQAQAIAAQGVTDLDNFIQKGAK 283 Query: 300 PPKFTEVTDVVLITRDNFKEEL 321 P K + +LI +DN + Sbjct: 284 PAKQRVMFRGILIQQDNASKVQ 305 >UniRef50_B7GJK7 ABC-type sugar transport system, periplasmic component n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GJK7_ANOFW Length = 332 Score = 193 bits (491), Expect = 7e-48, Method: Composition-based stats. Identities = 49/296 (16%), Positives = 110/296 (37%), Gaps = 22/296 (7%) Query: 30 FLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV--PDGEKTLNAIDSLAASGAKGFVIC 87 + ++ + P+++ + A +AGK+ + I ++ + ++ AS G ++ Sbjct: 57 LISQEFDNPYWRKIEQGAKEAGKNYDVNIEYIGPLRTSVDEQVKLLEKAIASRVDGIIVQ 116 Query: 88 TPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKE 147 + ++ KA ++ VI +D A + V + G+ G+ + Sbjct: 117 NLKDEAFIPLIDKAISRNIPVITID-----ADAPKSRRIAYVGTNNFEAGQLLGKAVVSR 171 Query: 148 MQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFD 207 ++ + I + + R R G + + A P ++ V + + A Sbjct: 172 VEGERELG-----VMIGTDTSENQRLRLQGFLSVI--AEHPRLKVVSVASSNISRIQASI 224 Query: 208 AANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQ 267 A ML +HP + + D +G AT+ + DI G + V+ E Q Sbjct: 225 QAEQMLRKHPHISVMVGTSALD--AIGIRMATKNLHRQ--DIQIFGFDDVEETIEAI--Q 278 Query: 268 ATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEK 323 +++ P GY + +++ ++ + +I R N ++E K Sbjct: 279 QGDIVATVVQKPYDMGYSAVKLMVEHLSGKQIQKEHFTAI--EVIDRQNVQQERNK 332 >UniRef50_Q4ZU91 Periplasmic binding protein/LacI transcriptional regulator n=4 Tax=Pseudomonas RepID=Q4ZU91_PSEU2 Length = 306 Score = 193 bits (491), Expect = 8e-48, Method: Composition-based stats. Identities = 46/305 (15%), Positives = 93/305 (30%), Gaps = 15/305 (4%) Query: 17 MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDS 75 + A A +G + + + + +K L ++ D E + + Sbjct: 15 FAGLAQAATPLIGVGMAKYNDNFQTILRHGVEKQVALLDADIFMENGQDDVELQMRQFRN 74 Query: 76 LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135 L S V+ K ++ A + ++ V+ V + Sbjct: 75 LVNSKVDAIVVAMVSGKSAPEMMRLANEAKVPLVFVNRNP--EPATWPALTAFVGSDELE 132 Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195 G Q +EL + +G V+ + ++ RT + +P+ ++ Q Sbjct: 133 SGTLQMEELARRANYKGN-----VVILVGDPSNKSSVMRTEDVEKVVAK--YPDMKVVQK 185 Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255 + + A + Q V +I ND +G + E G KA D + GI+ Sbjct: 186 KIGNWERSQAATIVIEWVKQ--GVDFSIIAANNDEMAIGAIMGLEKTGKKAGDYLVGGID 243 Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315 G +L S+ + + + V LIT + Sbjct: 244 GTPDGLKLMA--EGKMAVSVFQDALGQANGAVDAAMRMARGETLASPVIWV-PFKLITPE 300 Query: 316 NFKEE 320 N ++ Sbjct: 301 NRQQF 305 >UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional regulator n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FZM3_ACICJ Length = 339 Score = 193 bits (491), Expect = 8e-48, Method: Composition-based stats. Identities = 59/313 (18%), Positives = 109/313 (34%), Gaps = 26/313 (8%) Query: 19 QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---PDGEKTLNAIDS 75 + A++ + K P++ + AD A K G V A D + +++ Sbjct: 37 PAKPAKHYHFTLITKSNASPYWLAVREGADAAAKKFGVSVAFEAPASGTDLAGQIGMVNN 96 Query: 76 LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135 G G ++ +P+ V A + + V+ VD P + + + Sbjct: 97 AVTGGTDGIILAAQNPQALLKPVKSALAHHIPVVTVDSGLS-----PNISDCFLATSNVG 151 Query: 136 IGERQGQELYKE-MQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194 + M +G + + T R G M +K +P + Sbjct: 152 AAAALAKYTADHLMGGKGQYA-----IVDFNHTASTGIARPKGFMLGMK--SYPHIKKMG 204 Query: 195 -VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIG 253 + +ND+ A +ML Q+P +K +I G ND LG A + K + +G Sbjct: 205 PIQYSNNDVSAGLRIATTMLTQYPHLK--VIFGANDRAALGPAEAVQRAHAK---VKVVG 259 Query: 254 INGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLIT 313 + + E++ +A S+L SP GY + L + + P + T L+T Sbjct: 260 FDA--DLGEIALVKAGIIQASILQSPYDMGYYAVVALLDKLDGKTLPKRIN--TPYFLLT 315 Query: 314 RDNFKEELEKKGL 326 N + Sbjct: 316 PKNLGSSQATAAI 328 >UniRef50_A8RQW7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RQW7_9CLOT Length = 354 Score = 193 bits (491), Expect = 9e-48, Method: Composition-based stats. Identities = 45/315 (14%), Positives = 97/315 (30%), Gaps = 22/315 (6%) Query: 15 AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---PDGEKTLN 71 A +++ + + K ++Q A AG D G+ + D E + Sbjct: 52 AAPTEAKEDAEKVIAVIPKSLLFDYWQYVRIGAQSAGLDEGYAIDFQGTRTDTDLEGQVK 111 Query: 72 AIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMM 131 ++ G VI +P ++ +A + VI +D + + V Sbjct: 112 LVEDFIQRGVSAIVISPVNPDGMVPVLQQAEDAGIPVIIMDGKLNADFPR-----STVST 166 Query: 132 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ 191 G+ ++L + G + + R G D L +P + Sbjct: 167 NDEAAGKFAAEKLKELAGDAGG----TFAIVSAVPGAVQEGGREKGFSDEL--GTYPNYK 220 Query: 192 IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 251 I D ++ +L +P++ + +N+ + G K I Sbjct: 221 IIGTYYGKGDRNQTYNITQDILTSNPDITGF--YTVNEGSSAGVTLGVREGDLKEK--IF 276 Query: 252 IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311 + + V + + G++ +P + G + + + K V Sbjct: 277 VAFDPSTEVLDAIR--DGYVDGAVAQNPYLIGRTAVLNAIKVLNGETVEKKID--VPVTW 332 Query: 312 ITRDNFKEELEKKGL 326 +T DN + + L Sbjct: 333 VTIDNLDDPEIQNVL 347 >UniRef50_C8WV69 Periplasmic binding protein/LacI transcriptional regulator n=3 Tax=Firmicutes RepID=C8WV69_ALIAD Length = 349 Score = 193 bits (490), Expect = 9e-48, Method: Composition-based stats. Identities = 45/310 (14%), Positives = 101/310 (32%), Gaps = 30/310 (9%) Query: 27 KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA--VPDGEKTLNAIDSLAASGAKGF 84 + +++ + A KDLG + + D + + + + A G Sbjct: 57 TYYMVTFLSGIEYWKGCFAGMQAAAKDLGVKAVFTGAPQYDINQEVTTMQQVIAKHPAGI 116 Query: 85 VICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQEL 144 ++ + + + + ++ +A + VI+ D + + + G++ L Sbjct: 117 LVTSINAQAMTPVINQAIAAGIPVISFDS-----DAPQSKRYAYLGTSNIEAGQKAADYL 171 Query: 145 YKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPG 204 + + G V IT +R G D + AA +P ++ V ++D Sbjct: 172 GQALGGHGE------VAVITTPGELNLDQRVQGFKDEM-AAKYPGVKVVAVQNGNSDQIK 224 Query: 205 AFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELS 264 +++L +P + I G A + G K + + + A Sbjct: 225 TAQVTSALLQTYPNLAG--IFCTEADEGTGAATAVQEAG-KTGTVKIVSFDTDKATLNAI 281 Query: 265 KAQATGFYGSLLPSPDVHGYKS-----------SEMLYNWVAKDVEPPKFTEVTDVVLIT 313 K + ++ G+ + NW V+P T V ++T Sbjct: 282 K--SGQITATVAQGTWNMGFWGLMDLFAIHHNLVHPVANWQQSGVDPVPPEVDTGVTIVT 339 Query: 314 RDNFKEELEK 323 + N L++ Sbjct: 340 KSNVNAYLQQ 349 >UniRef50_A4XG54 Periplasmic binding protein/LacI transcriptional regulator n=2 Tax=Clostridia RepID=A4XG54_CALS8 Length = 345 Score = 193 bits (490), Expect = 9e-48, Method: Composition-based stats. Identities = 56/357 (15%), Positives = 105/357 (29%), Gaps = 52/357 (14%) Query: 1 MHK----FTKALAAIGLAAVMS----------QSAMAENLKL--------GFLVKQPEEP 38 M K + AI L ++ A + N KL + Sbjct: 1 MKKNFYKYLSIFLAIALIVSLAYALVPNSKDVTQASSGNPKLKGSPKEEYYMVTFASGIE 60 Query: 39 WFQTEWKFADKAGKDLGFEVIKIA--VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSA 96 +++ +K A G + I D + + + + A G ++ +P A Sbjct: 61 YWKGCFKGMKAAADLYGVKAIYTGAPQFDVNQQVTVLRQVIAKKPAGILVTCANPDALKA 120 Query: 97 IVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVK 156 + +A + VI D A ++ G + L K + +G Sbjct: 121 PIDEAIKKGIPVITFD-----ADSPKSLRYSVLETGNYNAGAMAARYLGKLLGGKGEVGI 175 Query: 157 ESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQH 216 + + +R G +D LK FP ++ + ND A +ML H Sbjct: 176 STVAAQLNH------EQRKQGFIDTLKK-EFPGIKVVSIVNDENDSTKAARGVAAMLQAH 228 Query: 217 PEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLL 276 P +K I + +G A + K I + + +L K S+ Sbjct: 229 PNIKG--IFCTDAPGGVGVATAIKEAN-KVGKIKIVSFDTDKGTLDLIK--QGVIDASIA 283 Query: 277 PSPDVHGYKSSEMLYNWVAK-----------DVEPPKFTEVTDVVLITRDNFKEELE 322 G+ L+ + P T +++T+ N + Sbjct: 284 QGTWNMGFWGMTFLFYLKHGIVNPVDNWKKFGINPLPPYVDTGTMVVTKQNVDAFYK 340 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.164 0.451 Lambda K H 0.267 0.0503 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,659,579,489 Number of Sequences: 3077464 Number of extensions: 71606002 Number of successful extensions: 292193 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 1601 Number of HSP's successfully gapped in prelim test: 5243 Number of HSP's that attempted gapping in prelim test: 276498 Number of HSP's gapped (non-prelim): 7731 length of query: 329 length of database: 1,040,396,356 effective HSP length: 129 effective length of query: 200 effective length of database: 643,403,500 effective search space: 128680700000 effective search space used: 128680700000 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.1 bits) S2: 94 (40.5 bits)