08/01/2012 07:45:29 : INFO  : Run start: Sun Jan  8 07:45:28 GMT 2012
08/01/2012 07:45:35 : INFO  : Initialised job
08/01/2012 07:45:37 : INFO  : Renaming log file 'phyre2_20120108_074528.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/4be562d76bc0377d/phyre_20120108_074528.log'
08/01/2012 07:45:39 : INFO  : Initialised job:
Sequence
>batch____
MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK
IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG
KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD
ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE
GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP
PKFTEVTDVVLITRDNFKEELEKKGLGGK

08/01/2012 07:45:40 : INFO  : Checked sequence
08/01/2012 07:45:43 : INFO  : Finding homologues with PSI-BLAST
08/01/2012 07:45:44 : INFO  : PSI-BLAST 3 iterations
08/01/2012 07:47:27 : INFO  : PSI-BLAST 5 iterations
08/01/2012 07:50:59 : INFO  : Finished PSI-BLAST
08/01/2012 07:51:03 : INFO  : Running Buildali to generate a3m file
08/01/2012 08:37:36 : INFO  : Converting to HMM
08/01/2012 08:37:46 : INFO  : Calibrating HMM
08/01/2012 08:38:06 : INFO  : Searching HMM database
08/01/2012 08:43:47 : INFO  : Finished buildali
08/01/2012 08:43:50 : INFO  : Predicting secondary structure
08/01/2012 08:44:04 : INFO  : Predicted secondary structure (PSI-Pred)
08/01/2012 08:44:07 : INFO  : Predicting Disordered regions
08/01/2012 08:44:14 : INFO  : Predicted Disorder (Disopred)
08/01/2012 08:44:17 : INFO  : Running memsat_svm check
08/01/2012 08:47:44 : INFO  : Running memsat_svm full
08/01/2012 08:57:41 : INFO  : Predicted Transmembrane (memsat_svm) ID '4be562d76bc0377d'
08/01/2012 08:57:44 : INFO  : Initialising fold library search
08/01/2012 08:57:49 : INFO  : Initialised search input
08/01/2012 08:57:53 : INFO  : Building Ensemble models
08/01/2012 08:57:57 : INFO  : Building hh.d8abpa_.model.1.pdb
08/01/2012 08:58:19 : INFO  : Building hh.c2xecD_.model.2.pdb
08/01/2012 08:58:34 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4be562d76bc0377d/hh.c2xecD_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4be562d76bc0377d/c2xecD_.113.pdb
08/01/2012 08:58:40 : INFO  : Building d8abpa_.1.pdb
08/01/2012 08:59:00 : INFO  : Building c2rjoA_.2.pdb
08/01/2012 08:59:20 : INFO  : Building d1gcaa_.3.pdb
08/01/2012 08:59:39 : INFO  : Building d1jx6a_.4.pdb
08/01/2012 09:00:00 : INFO  : Building c3ma0A_.5.pdb
08/01/2012 09:00:20 : INFO  : Building d2fvya1.6.pdb
08/01/2012 09:00:44 : INFO  : Building d1tjya_.7.pdb
08/01/2012 09:01:06 : INFO  : Building c3h75A_.8.pdb
08/01/2012 09:01:27 : INFO  : Building c3d02A_.9.pdb
08/01/2012 09:01:48 : INFO  : Building c2vk2A_.10.pdb
08/01/2012 09:02:07 : INFO  : Building c3g1wB_.11.pdb
08/01/2012 09:02:27 : INFO  : Building c3o1hB_.12.pdb
08/01/2012 09:02:49 : INFO  : Building c3h5oB_.13.pdb
08/01/2012 09:03:09 : INFO  : Building c2iksA_.14.pdb
08/01/2012 09:03:29 : INFO  : Building c3l49D_.15.pdb
08/01/2012 09:03:49 : INFO  : Building c3ksmA_.16.pdb
08/01/2012 09:04:10 : INFO  : Building c2qvcC_.17.pdb
08/01/2012 09:04:30 : INFO  : Building c2fn9A_.18.pdb
08/01/2012 09:04:52 : INFO  : Building c3l6uA_.19.pdb
08/01/2012 09:05:11 : INFO  : Building c3e3mA_.20.pdb
08/01/2012 09:06:16 : INFO  : Finished HH model building
08/01/2012 09:06:19 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
08/01/2012 09:07:23 : INFO  : html domain output complete ID '4be562d76bc0377d'
08/01/2012 10:50:32 : INFO  : Run end  : Sun Jan  8 10:50:30 GMT 2012
