BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (329 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_P02924 L-arabinose-binding periplasmic protein n=117 Ta...   672   0.0  
UniRef50_C4XAG8 L-arabinose-binding periplasmic protein n=11 Tax...   622   e-177
UniRef50_Q2T4S7 L-arabinose ABC transporter, periplasmic L-arabi...   280   5e-74
UniRef50_Q3JM30 L-arabinose ABC transporter, periplasmic L-arabi...   275   2e-72
UniRef50_Q987E6 L-arabinose-binding protein n=1 Tax=Mesorhizobiu...   133   1e-29
UniRef50_A6LT79 Periplasmic binding protein/LacI transcriptional...   100   1e-19
UniRef50_C7Q3D4 Periplasmic binding protein/LacI transcriptional...    94   5e-18
UniRef50_B0P682 Putative uncharacterized protein n=1 Tax=Anaerot...    82   3e-14
UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional...    77   8e-13
UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminoc...    56   2e-06
UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional...    54   8e-06
UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional...    53   2e-05
UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional...    49   2e-04
UniRef50_B8D164 ABC-type sugar transport system, periplasmic com...    49   3e-04
UniRef50_B2JTD1 Periplasmic binding protein/LacI transcriptional...    48   4e-04
UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-bindi...    47   8e-04
UniRef50_A1WNV9 Periplasmic binding protein/LacI transcriptional...    47   8e-04
UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantel...    47   0.001
UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gamm...    46   0.002
UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkh...    45   0.004
UniRef50_D0LRU4 D-xylose transporter subunit XylF n=1 Tax=Halian...    45   0.005
UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional...    44   0.010
UniRef50_A5FZZ2 Monosaccharide-transporting ATPase n=1 Tax=Acidi...    43   0.013
UniRef50_C4G7J1 Putative uncharacterized protein n=1 Tax=Abiotro...    43   0.015
UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clo...    43   0.019
UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotr...    42   0.025
UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional...    42   0.026
UniRef50_A0QZW4 D-ribose-binding periplasmic protein RbsB n=1 Ta...    42   0.028
UniRef50_A7II12 Periplasmic binding protein/LacI transcriptional...    42   0.042
UniRef50_Q28MQ1 Periplasmic binding protein/LacI transcriptional...    41   0.071
UniRef50_B5ZRZ8 Periplasmic binding protein/LacI transcriptional...    40   0.098
UniRef50_A6W303 Periplasmic binding protein/LacI transcriptional...    40   0.100

>UniRef50_P02924 L-arabinose-binding periplasmic protein n=117
           Tax=Gammaproteobacteria RepID=ARAF_ECOLI
          Length = 329

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/329 (100%), Positives = 329/329 (100%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK
Sbjct: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60

Query: 61  IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120
           IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG
Sbjct: 61  IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120

Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180
           KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD
Sbjct: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180

Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240
           ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE
Sbjct: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240

Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300
           GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP
Sbjct: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300

Query: 301 PKFTEVTDVVLITRDNFKEELEKKGLGGK 329
           PKFTEVTDVVLITRDNFKEELEKKGLGGK
Sbjct: 301 PKFTEVTDVVLITRDNFKEELEKKGLGGK 329


>UniRef50_C4XAG8 L-arabinose-binding periplasmic protein n=11 Tax=Enterobacteriaceae
           RepID=C4XAG8_KLEPN
          Length = 326

 Score =  622 bits (1603), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 299/326 (91%), Positives = 316/326 (96%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGF+VIK
Sbjct: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFDVIK 60

Query: 61  IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120
           IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVI VDDQFVNAKG
Sbjct: 61  IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVITVDDQFVNAKG 120

Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180
           KPM++VPLVMMAA++IG RQGQELYKEMQKRGWDVK++AVMAITA+ELDTARRRTTGS+D
Sbjct: 121 KPMESVPLVMMAASEIGARQGQELYKEMQKRGWDVKDTAVMAITADELDTARRRTTGSID 180

Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240
           ALKAAGFP+ QIY+VPTKSNDIPGAFDA NSMLVQHP+VKHWLIVGMND+TVLGGVRATE
Sbjct: 181 ALKAAGFPDAQIYRVPTKSNDIPGAFDAGNSMLVQHPQVKHWLIVGMNDNTVLGGVRATE 240

Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300
           GQGFKA D+IGIGINGVDAV+ELSKAQ TGFYGSLLPSPD+HGYK+SEMLYNWV K VEP
Sbjct: 241 GQGFKAPDVIGIGINGVDAVNELSKAQPTGFYGSLLPSPDIHGYKTSEMLYNWVTKGVEP 300

Query: 301 PKFTEVTDVVLITRDNFKEELEKKGL 326
           PKFT VTDVVLITRDNFKEEL KKGL
Sbjct: 301 PKFTAVTDVVLITRDNFKEELAKKGL 326


>UniRef50_Q2T4S7 L-arabinose ABC transporter, periplasmic L-arabinose-binding
           protein n=33 Tax=Proteobacteria RepID=Q2T4S7_BURTA
          Length = 340

 Score =  280 bits (716), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 146/315 (46%), Positives = 203/315 (64%), Gaps = 4/315 (1%)

Query: 7   ALAAIGLAAVMSQSAMAEN--LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP 64
           A AA+ +A +   +A   +  LK+GFLVK PE+ WF  E K A   G+  GF V+ I  P
Sbjct: 19  AFAALVIAPLAMPAATRADTPLKIGFLVKMPEQAWFINEQKAATALGQKEGFSVVNIGTP 78

Query: 65  DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124
           DGEK L AID+L + GA+GFVIC PD +LG AI A+A+ YDMK + VDDQ V++ GKP+ 
Sbjct: 79  DGEKVLAAIDNLGSQGAQGFVICAPDVRLGPAIAARAKRYDMKFVTVDDQLVDSSGKPLA 138

Query: 125 TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA 184
            VP + M+ATKIG + GQ +  EM+KRGW  +E   + +T  EL TA+ RT G+  AL A
Sbjct: 139 NVPHLGMSATKIGNQVGQAIADEMKKRGWKPEEVGALRVTNYELPTAKLRTDGATQALLA 198

Query: 185 AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF 244
           +GF ++ I+  P K+ D  G F AA  +L +HP VK W+I  +N+ TVLG VRATE    
Sbjct: 199 SGFKKENIFDAPQKTTDDEGGFSAAAPVLARHPNVKKWVIFALNEETVLGAVRATEQLHI 258

Query: 245 KAADIIGIGINGV-DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKF 303
            AAD+IG+GING  +A +E  K + TGF+G++  S   HG +S++ L +W+     PP  
Sbjct: 259 PAADVIGVGINGAGEAFAEFQKKEPTGFFGTIAVSSTNHGKQSAQNLVDWIRSGKAPPAD 318

Query: 304 TEVTDVVLITRDNFK 318
           T+ T   L+TR+N++
Sbjct: 319 TQ-TSGKLMTRENWQ 332


>UniRef50_Q3JM30 L-arabinose ABC transporter, periplasmic L-arabinose-binding
           protein n=105 Tax=Bacteria RepID=Q3JM30_BURP1
          Length = 456

 Score =  275 bits (703), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 141/302 (46%), Positives = 200/302 (66%), Gaps = 2/302 (0%)

Query: 26  LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFV 85
           +K+GF+VKQP++PWFQ EW+FA++A KD  F ++KIA P GEK   A+DSLAA  A+G +
Sbjct: 156 VKIGFVVKQPDDPWFQDEWRFAEQAAKDKHFTLVKIAAPSGEKVSTALDSLAAQKAQGVI 215

Query: 86  ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145
           IC PD KLG  I AKAR Y MK+++VDDQ V+ +G P+  VP + ++A +IG + G  + 
Sbjct: 216 ICAPDVKLGPGIAAKARRYGMKLMSVDDQLVDGRGAPLADVPHMGISAYRIGRQVGDAIA 275

Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205
            E ++RGW+  E  V+ +  ++L TAR RTTG++DALKAAGF    +   P  + D  GA
Sbjct: 276 AEAKRRGWNPAEVGVLRLAYDQLPTARERTTGAVDALKAAGFAAANVVDAPEMTADTEGA 335

Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVD-AVSELS 264
           F+AAN    +H   KHW+  G ND T +G VRA EG+G  A D+I +GING   A++E +
Sbjct: 336 FNAANIAFTKHRNFKHWVAFGSNDDTTVGAVRAGEGRGIGADDMIAVGINGSQVALNEFA 395

Query: 265 KAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKK 324
           K + TGF+GS+L +P +HGY +S  +Y+W+ ++  PP    +T   LITR N K    + 
Sbjct: 396 KPKPTGFFGSILLNPRLHGYDTSVNMYDWITQNRAPPPVV-LTSGTLITRANEKTARAQL 454

Query: 325 GL 326
           GL
Sbjct: 455 GL 456


>UniRef50_Q987E6 L-arabinose-binding protein n=1 Tax=Mesorhizobium loti
           RepID=Q987E6_RHILO
          Length = 327

 Score =  133 bits (334), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/329 (33%), Positives = 156/329 (47%), Gaps = 10/329 (3%)

Query: 1   MHKFTKALA--AIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV 58
           M   TKALA  AI  A +M+ +A A+++K+G++ K  E PWF  E   A KA +  G   
Sbjct: 1   MKTTTKALATVAILAAGLMAGAASADDIKIGYINKMGEHPWFVAEVGGAKKAAEAAGATF 60

Query: 59  IKIAVP-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117
           +   V  D   T+   D++   G KG  I  PD  LG  I  KA+   + ++AVDD    
Sbjct: 61  VSQDVQFDSNLTITTFDTMVGDGVKGIAIVVPDKALGPVIAEKAKAAKIPLVAVDDDIYY 120

Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177
             G     VP V M A  IG R G+EL K  +  GW  KE  + +I   + DT  +R  G
Sbjct: 121 QDGT---QVPYVGMNAYNIGARVGEELAKLYKADGWAGKEVRIASIEDRKADTCMQRNKG 177

Query: 178 SMDA-LKAA-GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG 235
           + +A LKA   F    I +VP   N +  A D   + L  +P V +W+    ND  VLG 
Sbjct: 178 AEEAFLKAVPDFKPANILRVP-YDNTMVNAIDVMTTTLTANPGVTNWIFYSCNDDGVLGA 236

Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295
            RA E  G+ A   +GIGI+G  A       + + F G++  +   HG  + ++L   + 
Sbjct: 237 ARALENAGYAADQGMGIGIDGSRACEAFGSGKPSAFRGTMWLNSANHGALAVKILLASIK 296

Query: 296 KDVEPPKFTEVTDVVLITRDNFKEELEKK 324
              + P     TD   IT  NF  + + K
Sbjct: 297 DGTKLP-VQSFTDPEYITAGNFASDYKAK 324


>UniRef50_A6LT79 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Clostridium beijerinckii NCIMB 8052
           RepID=A6LT79_CLOB8
          Length = 331

 Score =  100 bits (248), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/306 (24%), Positives = 144/306 (47%), Gaps = 12/306 (3%)

Query: 19  QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGF-EVIKI-AVPDGEKTLNAIDSL 76
           QS+   +L +  + K  +E WFQ E + A      +G  +VI I A  + +  L+A+D+L
Sbjct: 27  QSSKKSDLVIAVIYKTLDEAWFQEESEAAKNKALAMGAKDVITIDAKMNPDVYLSALDNL 86

Query: 77  AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136
                 G +IC PD KL    + + +  ++ VIA DD   + +G  +   P V + + +I
Sbjct: 87  ITQKVDGILICVPDQKLSKITIDRCKKSNIAVIACDDPLTDDEGNYI--APFVGIDSNQI 144

Query: 137 GERQGQEL--YKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALK--AAGFPEKQI 192
           G      +  Y E   +  D   S ++ ++ + + +   RT G ++  K     FP + I
Sbjct: 145 GRDMTSLMVDYLEKNNKLSDPNSSGLLLMSMDSVSSCIPRTEGQLETFKDRLPSFPRENI 204

Query: 193 YQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGI 252
           +Q          +F +A S +  +  +K+W ++  N++  +G ++A +  G  A + + +
Sbjct: 205 FQAEYNGQS-EKSFYSAASTITSNKNIKNWFVMSANEAGTIGAIKALDQSGL-AENAVAV 262

Query: 253 GINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLI 312
           G+ G  A  E  K  +     + + + +V    + E++ N +     P K+  V D V I
Sbjct: 263 GVGGYVAKDEFQKQNSPLIASAYISATEVGEIAAQELMENLLLNKNIPDKYL-VKDKV-I 320

Query: 313 TRDNFK 318
           T+DN+K
Sbjct: 321 TKDNYK 326


>UniRef50_C7Q3D4 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Actinomycetales RepID=C7Q3D4_CATAD
          Length = 347

 Score = 94.4 bits (233), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 68/273 (24%), Positives = 121/273 (44%), Gaps = 7/273 (2%)

Query: 26  LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV-PDGEKTLNAIDSLAASGAKGF 84
           + L +L KQ ++ +F  E   A      LG  +  + +  D  +T++ + +  A  + G 
Sbjct: 44  ITLTYLQKQGDQQYFIDEADGAKAKAAQLGIGLTVVNLGDDANQTVSDVQAAVAQKSSGL 103

Query: 85  VICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDT-----VPLVMMAATKIGER 139
           +I  PDP +G  +V  A+   + ++  DDQ       P        VP V  + T++G  
Sbjct: 104 IIVPPDPAVGPQVVQLAKDAGIPLLTSDDQVCTNGPDPASCATANLVPRVGFSGTQMGTD 163

Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199
            G++  +   K GW+  ++  ++    ++     R   +  +  A      Q   V T  
Sbjct: 164 VGKKAAELFVKAGWNAADTRTISAWKQDVTVCTDRVKAAKTSFAAGAGAAVQDIDVAT-D 222

Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259
           N   GA D   + +  +P VKHW++ G ND  V GGV A +  G  A ++IG+G+    A
Sbjct: 223 NTPTGAQDKVAATITANPGVKHWVLWGCNDENVQGGVTALQNAGVSADNVIGVGLGAYLA 282

Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYN 292
             +   +Q TG   +L  S    G  + + +Y+
Sbjct: 283 CKDWGSSQPTGMKAALYISGKNIGALAVQTMYD 315


>UniRef50_B0P682 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis
           DSM 17241 RepID=B0P682_9FIRM
          Length = 361

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 67/264 (25%), Positives = 117/264 (44%), Gaps = 8/264 (3%)

Query: 31  LVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKT-LNAIDSLAASGAKGFVICTP 89
           + K     WF  E   + K  +D G+    +       T ++ ++++ A    G ++C P
Sbjct: 66  IYKMGTATWFIQEGAASQKVVEDAGYTWKFMDCNQNAATYMDLLNTVIADKVDGVLVCLP 125

Query: 90  DPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQ 149
           D  L    V       + VIAVDD      G  +   P V +    IG+  G+     ++
Sbjct: 126 DQNLSQTTVDMLTEAGIPVIAVDDALETEDGTKL--APWVGIDGFSIGKAAGEWGVNYIK 183

Query: 150 KRGWDVKES-AVMAITANELDTARRRTTGSMDALKAA--GFPEKQIYQVPTKSNDIPGAF 206
           +      ES  ++ +TA+ + +   RT G + AL      FPE +I++    ++   G  
Sbjct: 184 ENNLADDESFGILLMTADTVSSCVPRTEGELAALSEGLPDFPESRIFRADCDTSAEDGN- 242

Query: 207 DAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKA 266
            AAN+++  HPE+K WL++G++D +  G  RA E  G   AD + +G+ G     E    
Sbjct: 243 QAANAVITGHPEIKKWLVLGVSDESSQGAARAIESAGL-GADSMVMGLGGYLCPDEFENP 301

Query: 267 QATGFYGSLLPSPDVHGYKSSEML 290
            +     +   + DV G  + EM+
Sbjct: 302 DSCFRAAAYFSARDVGGTAAQEMV 325


>UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Arthrobacter chlorophenolicus A6 RepID=B8HJG2_ARTCA
          Length = 319

 Score = 77.0 bits (188), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 95/326 (29%), Positives = 142/326 (43%), Gaps = 31/326 (9%)

Query: 4   FTKA--LAAIGLAAVMS----QSAMAENL-KLGFLVKQPEEPWFQTEWKFADKAGKDLGF 56
           FT A  LAA+ LAA  S     +A  + + K+G +V+    P+F    K A +A   +G 
Sbjct: 11  FTAAVTLAALSLAACSSGDTQPAAKPKKIEKIGLMVQDMSNPFFSAMDKGAKEAAASIGA 70

Query: 57  EV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQF 115
               + A  D       ID+    G    VI   D       + +A+   + VIAVD   
Sbjct: 71  TANTQDAQLDLANQNTQIDTFIQQGVNLIVISAVDENGIQPAIERAKQAGIIVIAVD--- 127

Query: 116 VNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRT 175
                K  D V  VM  A + GE+  Q L+++M  +G       V+ +    L T R R 
Sbjct: 128 --TPAKSADAV--VMTDAVQAGEKSCQYLFEQMGGKGN------VLLVDGTPLQTIRDRI 177

Query: 176 TGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG 235
           TG  + +K   FP  ++       ND          ML   P+V+   I GMND + LG 
Sbjct: 178 TGCNNVVKK--FPGIKVVGQQASKNDRASGLAVTTDMLTATPDVQG--IFGMNDPSALGA 233

Query: 236 VRATEGQGFKAADIIGIGINGV-DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWV 294
           V A + Q  KA  +   G++G  +AV+EL K   + F G+   +P     K+ E+  N +
Sbjct: 234 VLAVQ-QAHKAGTVKVTGVDGSPEAVAEL-KQSGSPFMGTATQNPAEMVRKAVEVAQNII 291

Query: 295 AKDVEPPKFTEV-TDVVLITRDNFKE 319
             D +PP  T +     L+TRD   +
Sbjct: 292 --DNKPPAETTILIPSELVTRDTVSQ 315


>UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC
           29174 RepID=A5ZRB9_9FIRM
          Length = 333

 Score = 55.8 bits (133), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 77/313 (24%), Positives = 135/313 (43%), Gaps = 33/313 (10%)

Query: 16  VMSQSAMAEN---------LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDG 66
           +M Q A+A N         L +  + +   +P+        +KA KDL    IK+ + DG
Sbjct: 17  IMGQCAIAVNAASKTDDDTLNITLINQGSGQPYIAAYKNCFEKAEKDLN---IKVNLVDG 73

Query: 67  ----EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK- 121
                +  NAI +  +SGA G VI   DP      V +A    ++V A+  Q      + 
Sbjct: 74  GWDANQQANAIQNAISSGADGIVISPVDPSAVCTYVDEALDAGIEVCALTTQIGTGDAED 133

Query: 122 PM--DTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
           P+  +TV LV    T++G R   ++  E   R   +   A++  T    DT  R+    +
Sbjct: 134 PVYPETVGLVGHIETEVG-RTAMDIAAEALDRSGKI---AIIEGTPGMSDTEGRKK--GI 187

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
           D  +   +P+ ++         +  A+ A  +++  +PEV+  L++  +D+  +G  +A 
Sbjct: 188 DE-ENKEYPDIEVVSRVCGEWVVDKAYTAMQNIIQSNPEVE--LVICHSDNMAVGAAKAL 244

Query: 240 EGQGFK-AADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
           E         I+GIG    DA+  + K +    YG+++  P+   Y + E     V  + 
Sbjct: 245 EDADMTDKVKIVGIG-GSKDALDLIKKGE---IYGTIMYVPETEAYTALEATAKVVRGEA 300

Query: 299 EPPKFTEVTDVVL 311
           E   F  V D+ L
Sbjct: 301 EKETFYNVQDLPL 313


>UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Arthrobacter sp. FB24 RepID=A0JVZ4_ARTS2
          Length = 318

 Score = 53.9 bits (128), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 109/266 (40%), Gaps = 26/266 (9%)

Query: 8   LAAIGLAAVMSQSAMAEN--LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVP 64
             +IGL    + S  A +  +K+G  V     P+FQ E K A+  GK +G EV+ ++A  
Sbjct: 21  FGSIGLTGCATASGAAGDRPMKIGVTVANSTNPFFQQESKTAESYGKSVGAEVLSQVANE 80

Query: 65  DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124
           D +   N ID    +G K  VI   D       V +A    + VI VD+Q  NA      
Sbjct: 81  DVQTQSNQIDQFITAGVKFIVIDAADTDGVGPAVKRAVSAGIPVIGVDNQSKNA------ 134

Query: 125 TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA 184
           TV  +     + GE   + L  ++  +G       +  +    +     R TG    L  
Sbjct: 135 TVN-ITTDNKQAGEISCRSLADKLGGKGK------IAILNGTPVSAVDDRVTGCKGIL-- 185

Query: 185 AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF 244
             +P+ +I       N    A   A  +L  +P++  +    +ND + +G   A E +G 
Sbjct: 186 GQYPDIKIVADQRGENSRDSALPIATDILTANPDLDGFF--AINDPSAVGVQLAAEQKG- 242

Query: 245 KAADIIGIGINGVDAVSELSKAQATG 270
             A ++   I  VD  S  + A A G
Sbjct: 243 --ASVV---ITSVDGASSATDAIAAG 263


>UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional regulator n=23
           Tax=Bacteria RepID=C6B4I0_RHILS
          Length = 313

 Score = 52.8 bits (125), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 64/291 (21%), Positives = 123/291 (42%), Gaps = 20/291 (6%)

Query: 28  LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV-PDGEKTLNAIDSLAASGAKGFVI 86
           +  +    + P+F+ E   A+   K+LG+E + +    D  K    ID+    GAK  ++
Sbjct: 30  IAIITPAHDNPFFKAEAVGAEAKAKELGYETLLMTHDDDANKQSEMIDTAIGRGAKAIIL 89

Query: 87  CTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYK 146
                    A V KA+   +    +D + +NA G  +  +        ++G    QE  K
Sbjct: 90  DNAGADASVAAVKKAKDAGIPSFLIDRE-INATGVAVAQIVSNNYQGAQLG---AQEFVK 145

Query: 147 EMQKRGWDVKESAVMAITANELDT-ARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205
            M ++G  V+      +   E DT A  R+ G  D +    +P+ +     + +     A
Sbjct: 146 LMGEKGNYVE------LVGKESDTNAGIRSQGYHDVID--DYPDLKSVAKQSANWSQTEA 197

Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSK 265
           +    ++L  +P++K   ++  ND+  +G + A +  G K  D+I +G +G + V +  K
Sbjct: 198 YSKMETILQANPDIKG--VISGNDTMAMGAIAALQAAGRK--DVIVVGFDGSNDVRDSIK 253

Query: 266 AQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316
             + G   ++L         + E    ++     P +  ++ D VLI  DN
Sbjct: 254 --SGGIKATVLQPAYAQAQLAVEQADAYIKNKTTPKEEKQLMDCVLINADN 302


>UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Proteobacteria RepID=A6VWG6_MARMS
          Length = 314

 Score = 49.3 bits (116), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 83/328 (25%), Positives = 138/328 (42%), Gaps = 41/328 (12%)

Query: 4   FTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV 63
           F K+  A  L  + S S +A N  +  +    + P+F+   + AD   K+LG++ + +A 
Sbjct: 6   FLKSCLAATLLTLASTSVLASNGLIAIITPSHDNPFFKAGAEGADAKAKELGYDTL-VAS 64

Query: 64  PDGE--KTLNAIDSLAASGAKGFVI--CTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
            DG+  K    I++  A  AK  ++     D  +GS    K  G    +    D+ +N  
Sbjct: 65  HDGDVNKQNQLIETAIARQAKAVILDNADADASIGSLERLKKAGIPAFLY---DREINKT 121

Query: 120 GKPMDTVPLVMMAATKI------GERQGQELYKEMQKRGWDVKESAVMAITANELDT-AR 172
           G          +A T+I      G +   E + E+   G +  E     +   E DT A+
Sbjct: 122 G----------IAVTQIVSNNFQGAQLAGEKFAELMGDGGEYVE-----LLGPESDTNAQ 166

Query: 173 RRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTV 232
            R+ G  D L    FPE ++    + +     AF    S+L  +P +K  +I G NDS  
Sbjct: 167 VRSEGFHDILD--NFPEFKMVARQSANWSQTEAFSRMESILQANPNIK-GVITG-NDSMA 222

Query: 233 LGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEM--L 290
           LG   A +  G K  D+  +G +G+D V + S  + +    +++        + +E   L
Sbjct: 223 LGAEAALQAAGRK--DVFIVGFDGLDYVRD-SIIKGSNIKATIMQPAYAQAQRVAEQADL 279

Query: 291 YNWVAKDVEPPKFTEVTDVVLITRDNFK 318
           Y        P K  ++ D VLI   N K
Sbjct: 280 YIRTGSTGLPEK--QLMDCVLIDSSNAK 305


>UniRef50_B8D164 ABC-type sugar transport system, periplasmic component n=6
           Tax=Bacteria RepID=B8D164_HALOH
          Length = 308

 Score = 48.5 bits (114), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/243 (25%), Positives = 108/243 (44%), Gaps = 20/243 (8%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDSL 76
           SQ A+A+++ +G  +   + P++    +  +KA  D G E ++ IA  D  K ++ ++  
Sbjct: 21  SQFALADDITIGASLLTQQHPFYVQLKQAMEKAADDNGVELIVSIANQDLNKQISDVEDF 80

Query: 77  AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136
              G    V+   D K     + KA+   + VI VD   ++A+G  +D    V       
Sbjct: 81  IVRGVDAIVLSPVDSKGVVGAIIKAKRAGIPVITVD---ISAEGVEVDA--HVATDNYYG 135

Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV- 195
           G   G+ + K +  +G       V  I    + + R R  G  +A+  + +P  +I  + 
Sbjct: 136 GRIAGETMAKVLNGKGQ------VAIIDYPVVQSVRDRVAGFKEAV--SKYPGIEIVAIQ 187

Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255
           P  +   P A + A ++L  HPEV    I G  D   L  V A +  G +  D+  IG +
Sbjct: 188 PGITR--PEALNTAQNILQAHPEVDG--IFGFGDDAALASVVAVKSAGME-DDVKVIGFD 242

Query: 256 GVD 258
           G++
Sbjct: 243 GME 245


>UniRef50_B2JTD1 Periplasmic binding protein/LacI transcriptional regulator n=3
           Tax=Burkholderia phymatum STM815 RepID=B2JTD1_BURP8
          Length = 322

 Score = 48.1 bits (113), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 84/331 (25%), Positives = 132/331 (39%), Gaps = 41/331 (12%)

Query: 1   MHKFTKALAAIGLA---AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE 57
           M K  K L  IGLA   A M+  A A+ + LG++    + P+     +  + A K  G +
Sbjct: 1   MKKCFKKLGLIGLAGAMAFMTDVAAAKEITLGYVAAGMQYPFNVAAARGFEAAAKAAGVK 60

Query: 58  VIKI-AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116
            I + A    EK  NA+D L A    G  +   D  +  + V +A  +++  +AV  Q  
Sbjct: 61  TIVLDAKTSVEKQGNAVDDLIAQKVDGIAVLPIDAVVAQSWVERATSHNIPFVAVATQIG 120

Query: 117 NAKGKPMDTV-----PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAIT--ANELD 169
           + +   ++ V      LV      +G    Q   K + K       +A +AI   A    
Sbjct: 121 DPQKHAINDVYPKLTALVASDEVHVGTDAAQIAAKLLPK-----DRTAKIAIVEGAPGYP 175

Query: 170 TARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMND 229
           T  + T G  + L  AG   + +   PT      G      ++LV HP+V   LI    D
Sbjct: 176 TVWQVTKGFKEGLDKAGVKYQIVASQPTDWTPEKGE-SVCQNILVAHPDVD--LIFNQAD 232

Query: 230 STVLGGVRATEGQGFKAADI----IGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYK 285
             V+G  RA    G  A  +      +GIN V  V ++         G++   P   G +
Sbjct: 233 DMVIGCARAVRAAGSHAKLVSRGGSKLGINAVK-VGDVD--------GTVCIQPGKMGER 283

Query: 286 SSEMLYNWVAK---------DVEPPKFTEVT 307
           + + LY  V           DV+ P+ T+ T
Sbjct: 284 AFKALYAAVTDPNAPKAKFIDVDTPQVTKAT 314


>UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-binding protein n=7
           Tax=Bacteria RepID=B9KA11_THENN
          Length = 326

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 67/294 (22%), Positives = 122/294 (41%), Gaps = 18/294 (6%)

Query: 27  KLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDSLAASGAKGFV 85
           K+  ++     PWF    + A +  + LG+E  I  +  D  K     D++ A+G    +
Sbjct: 35  KMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDAIIAAGYDAII 94

Query: 86  ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145
               D     A V +A+   + V  V D+ +NA+G     V  +       G   G+   
Sbjct: 95  FNPTDADGSIANVKRAKEAGIPVFCV-DRGINARGL---AVAQIYSDNYYGGVLMGEYFV 150

Query: 146 KEMQKRGWDVKE---SAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDI 202
           K ++++  D KE   + ++ I + +      R+ G    +    +PE ++    +   D 
Sbjct: 151 KFLKEKYPDAKEIPYAELLGILSAQ--PTWDRSNGFHSVVDQ--YPEFKMVAQQSAEFDR 206

Query: 203 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSE 262
             A+     +L  HPE+K   I   ND+  LG ++A E  G    DI   G +G + V  
Sbjct: 207 DTAYKVTEQILQAHPEIK--AIWCGNDAMALGAMKACEAAG--RTDIYIFGFDGAEDVIN 262

Query: 263 LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316
             K +      +++  P +    + E    ++  +   P+   VT V L+TR+N
Sbjct: 263 AIK-EGKQIVATIMQFPKLMARLAVEWADQYLRGERSFPEIVPVT-VELVTREN 314


>UniRef50_A1WNV9 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Proteobacteria RepID=A1WNV9_VEREI
          Length = 374

 Score = 47.0 bits (110), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 62/254 (24%), Positives = 113/254 (44%), Gaps = 19/254 (7%)

Query: 8   LAAIGLAAVMSQSAMAENL--KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVP 64
           +AA+ LAA  +  A A N+  K+G++       W+Q   K     GKDLG EV ++ A  
Sbjct: 40  VAAVTLAATFAAPAQARNMPRKIGYVTNYATHEWYQNVIKGMKAHGKDLGIEVEVQDANL 99

Query: 65  DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124
           D  K + A +   A G    +I   + +    ++ KA+  ++ V+         +G P+ 
Sbjct: 100 DIAKQVAAAEDFIAKGVDVLIITPVNEEGVVPLLRKAKAANIPVVL--------EGNPVK 151

Query: 125 -TVPLVMMAATKIGERQGQELYKEMQKR-GWDVKESAVMAITANELDTARRRTTGSMDAL 182
               +V +     G   G E  K  +K+ G   K   VM +    L     R+ G MD +
Sbjct: 152 GMTTMVAICDYDTGYFSGIEAGKYAKKKLGGTAK---VMNVGLPLLSATVLRSKGFMDGI 208

Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242
           +    P   +        +   A + +++ L ++ ++   +I G+NDS+ LGG++A +  
Sbjct: 209 RTV-IPGATMVHDLDGGGNPDRALEVSSAALAKNADIN--IIYGINDSSSLGGLQAWKAA 265

Query: 243 GFKAADIIGIGING 256
           G    +++ +G  G
Sbjct: 266 GKSQDNLLTVGTGG 279


>UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantella formatexigens
           DSM 14469 RepID=C6LH93_9FIRM
          Length = 362

 Score = 47.0 bits (110), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 70/321 (21%), Positives = 124/321 (38%), Gaps = 47/321 (14%)

Query: 25  NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTLNAIDSLAASGA 81
           +  +  +VK    P+         KA +D+GFE + ++       E  +  ++ +  SG 
Sbjct: 58  DYTIAMIVKNNTNPFMNGVLNGFSKAAEDIGFEAMLLSPQTADSNEDQVRLVEDMIQSGV 117

Query: 82  KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141
               IC         + A  + +D  +  +       +G   +T  +     TK  +   
Sbjct: 118 DA--ICIHPVDSNGIVPALEKAWDAGIPVL------VQGTQANTDKIYGWYGTKYADEA- 168

Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAG-----FPEKQIYQVP 196
             L  E      D K + V         T  ++   ++D + A       +P+  + +  
Sbjct: 169 -TLIAEYLAEKLDYKGNVVYI-------TGPQQAQNAIDEINATHAVFEKYPDLNLIE-- 218

Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHW------LIVGMNDSTVLGGVRATEGQGFKAA-DI 249
               + PG F+ A SM V    ++ +       ++G ND   +G + A E  G+K   + 
Sbjct: 219 ----EQPGNFNRATSMSVMENLIQKYSEDDIDWVIGGNDECAMGAIAAMENAGWKLGFED 274

Query: 250 IGIGINGVDAVSELSKAQATG-FYGSLLPSPDVHGYKSSEMLYNWVAK-DVEP-----PK 302
            GIG++G+D   + S A   G    S+ P P   GY  +  L N++   D+ P     P 
Sbjct: 275 GGIGVSGIDCNKDASYAMQEGTLTVSVNPDPVSLGYIGAAFLVNYLNDGDLFPEYVAWPD 334

Query: 303 FTEVTDVVLITR--DNFKEEL 321
           F    DVV+     DN+ E L
Sbjct: 335 FQTADDVVIDASNIDNYIENL 355


>UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gammaproteobacteria
           RepID=A8GZV8_SHEPA
          Length = 299

 Score = 45.8 bits (107), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 108/258 (41%), Gaps = 20/258 (7%)

Query: 2   HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI 61
           HK +  L+A  L+   S SA A++  +  ++     P+F T    A+    +LG+++I +
Sbjct: 7   HKVSVLLSAALLSVSTSFSASAQD-AIAIVLSTMNNPFFVTMKDGAEAKAAELGYKLIAL 65

Query: 62  -AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120
            +  D  K L  ++ L   G K  +I   D    +  +  A   ++ V+ +D    +   
Sbjct: 66  DSQNDPSKELANVEDLTMRGVKAILINPTDALAVTNAIRTANRANIPVLTLDRTAAHG-- 123

Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180
              D V  +       GE  G+ + +++ K    ++   +   +A     AR R  G  +
Sbjct: 124 ---DIVSHIASDNIAGGELAGEFIAQQLGKNAKVIQLEGIAGTSA-----ARERGEGFSN 175

Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240
           A+ A  F   ++        D     +   +ML  + +V+   +   ND   LG +RA E
Sbjct: 176 AVTANNF---ELLSSQPADFDRSKGLNVMENMLAANGDVQA--VFAQNDEMALGALRAIE 230

Query: 241 GQGFKAADIIGIGINGVD 258
             G    DI+ IG +G D
Sbjct: 231 AAG---KDILVIGFDGTD 245


>UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkholderia graminis
           C4D1M RepID=B1G1G9_9BURK
          Length = 369

 Score = 45.1 bits (105), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 67/304 (22%), Positives = 124/304 (40%), Gaps = 19/304 (6%)

Query: 27  KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI-AVPDGEKTLNAIDSLAASGAKGFV 85
           K+GF V      +F       +K  K+ GF++++  A  D ++ +N   +L + G    V
Sbjct: 69  KIGFSVSTLNNAFFVGLKAGVEKGAKEQGFDLVQTNANGDAQQQVNDAINLLSQGVTALV 128

Query: 86  ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145
           +   D K     V KA   ++ V  +D      K         V      +G+   + + 
Sbjct: 129 LNPIDSKAIIPAVEKANAMNIPVFTLDRGSDGGK-----VTSFVASDNVALGQTAAKWIA 183

Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205
            ++ KR    K + V  I       A  R  G  D +  A +P+ ++      + D   +
Sbjct: 184 DQLTKRYGSAKGNVVDLIGLVGTTAATDREKGFSDEI--AKYPDIKVVARQEGAFDQEKS 241

Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQG-FKAAD----IIGIGINGVDAV 260
            +A  ++L ++P++    + G ND   +G  +A +  G +K  D    I+ IG +G    
Sbjct: 242 LNAMTNILQKYPQIDA--VFGANDDNTVGAEKAIDNAGRYKPLDDKQHILVIGADGT--A 297

Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320
             LS  +A     ++  +P     KS + + ++ AK   P  +   T  +LI + N   +
Sbjct: 298 QALSAIRAGKQDATISQNPIQMAAKSLQFVADYTAKKDVPANYAWPT--LLIDKSNIDSD 355

Query: 321 LEKK 324
             KK
Sbjct: 356 ATKK 359


>UniRef50_D0LRU4 D-xylose transporter subunit XylF n=1 Tax=Haliangium ochraceum DSM
           14365 RepID=D0LRU4_HALO1
          Length = 374

 Score = 44.7 bits (104), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 38/123 (30%), Positives = 65/123 (52%), Gaps = 8/123 (6%)

Query: 26  LKLGFLVKQPEEPWFQTEWK-FADKAGKDLGFEVIKIAVPDGEKT-LNAIDSLAASGAKG 83
           LK+GFL+K  +E  +Q + K F DKA + LG EV+  +  + E+T L+  +++ A GAK 
Sbjct: 52  LKVGFLLKTMQEERYQRDKKAFIDKA-QSLGAEVLFDSANNNEQTQLSKFETMLAQGAKV 110

Query: 84  FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143
            V+   +      +V  A    ++V+  D   VN    P+D    VM  +  +G+ QG+ 
Sbjct: 111 IVLQPVNTGTAGNMVKMANEEGVRVVGYDSMLVNG---PLDV--QVMQDSWAVGKLQGEA 165

Query: 144 LYK 146
           + +
Sbjct: 166 MVE 168


>UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Acidiphilium cryptum JF-5 RepID=A5FZM3_ACICJ
          Length = 339

 Score = 43.5 bits (101), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 64/300 (21%), Positives = 112/300 (37%), Gaps = 26/300 (8%)

Query: 23  AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEK---TLNAIDSLAAS 79
           A++     + K    P++    + AD A K  G  V   A   G      +  +++    
Sbjct: 41  AKHYHFTLITKSNASPYWLAVREGADAAAKKFGVSVAFEAPASGTDLAGQIGMVNNAVTG 100

Query: 80  GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139
           G  G ++   +P+     V  A  + + V+ VD             +    +A + +G  
Sbjct: 101 GTDGIILAAQNPQALLKPVKSALAHHIPVVTVDSGL-------SPNISDCFLATSNVGAA 153

Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPE-KQIYQVPTK 198
                Y      G   K    +    +   T   R  G M  +K+  +P  K++  +   
Sbjct: 154 AALAKYTADHLMGG--KGQYAIVDFNHTASTGIARPKGFMLGMKS--YPHIKKMGPIQYS 209

Query: 199 SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVD 258
           +ND+      A +ML Q+P +K  +I G ND   LG   A +    K      + + G D
Sbjct: 210 NNDVSAGLRIATTMLTQYPHLK--VIFGANDRAALGPAEAVQRAHAK------VKVVGFD 261

Query: 259 A-VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317
           A + E++  +A     S+L SP   GY +   L + +     P +    T   L+T  N 
Sbjct: 262 ADLGEIALVKAGIIQASILQSPYDMGYYAVVALLDKLDGKTLPKRIN--TPYFLLTPKNL 319


>UniRef50_A5FZZ2 Monosaccharide-transporting ATPase n=1 Tax=Acidiphilium cryptum
           JF-5 RepID=A5FZZ2_ACICJ
          Length = 369

 Score = 43.1 bits (100), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 69/261 (26%), Positives = 105/261 (40%), Gaps = 43/261 (16%)

Query: 7   ALAAIGLAAVMSQSAMAENLK--------LGFLV--------KQPEEPWFQTEWKFADKA 50
           A+ A GL A  +QS    ++         + FL+        +Q + PWF      AD  
Sbjct: 15  AVGAFGLTAAHAQSVTQPSVHQISSKKTTIAFLLPENSSPRYEQVDRPWFIKMAHAADPN 74

Query: 51  GKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIA 110
            K     ++  A    +  LN  +S  ++GA   V+   D K G+AIV  A    +KVI+
Sbjct: 75  AK----LIVSNANSSPDTQLNQAESAISNGADVLVVDPVDGKAGAAIVNYAARNHVKVIS 130

Query: 111 VDDQFVNAKGKPMDTVP--LVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANEL 168
            D           D+ P   V    TK+GE QG+ + K  +  G      +VM I     
Sbjct: 131 YDRLI-------QDSKPDYYVSFDNTKVGELQGEYIAKHTKPGG------SVMMINGAPT 177

Query: 169 D-TARRRTTGSMDALKAAGFPEKQI---YQVPTKSNDIPGAFDAANSMLVQ-HPEVKHWL 223
           D  A     G+M+ L    F   ++   Y V T       AF+ +   L + H +V    
Sbjct: 178 DPNAFDFRKGAMNVLGPL-FKSGKLHLAYSVMTPDWSPQNAFEESQQALTRLHNKVN--A 234

Query: 224 IVGMNDSTVLGGVRATEGQGF 244
           ++  ND T  G +RA +  G 
Sbjct: 235 VLAANDGTASGVIRALQAVGL 255


>UniRef50_C4G7J1 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC
           49176 RepID=C4G7J1_ABIDE
          Length = 360

 Score = 43.1 bits (100), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 37/127 (29%), Positives = 58/127 (45%), Gaps = 13/127 (10%)

Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260
           D   A D A +M+  +P +K   I   ND+  +G V A +  G        I + G D  
Sbjct: 242 DRTKAMDVATNMISANPNLKA--IYCCNDTMAMGAVEAVKKSGKD------IKVCGTDGN 293

Query: 261 SELSKAQATG-FYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDV----VLITRD 315
            +  KA A G    ++  +P + G  +  ++   V ++ +P    EVT      VLIT+D
Sbjct: 294 DDAIKAVADGELAATVAQNPKLVGATALNLMVKAVKENAKPEAGAEVTQTGIAAVLITKD 353

Query: 316 NFKEELE 322
           N KE L+
Sbjct: 354 NAKEYLK 360


>UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clostridium botulinum
           C str. Eklund RepID=B1B7W7_CLOBO
          Length = 325

 Score = 42.7 bits (99), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 60/248 (24%), Positives = 110/248 (44%), Gaps = 23/248 (9%)

Query: 28  LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTL----NAIDSLAASGAKG 83
           +  ++K     +++T    A+ A K+LG +V ++  P+ E  +    + I+     G   
Sbjct: 41  VAVVLKALNSDYWKTVQAGANDAAKELGVKV-QVLGPNAETDVVGQTSLIEDQIVKGVDA 99

Query: 84  FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143
            V+    P        KA    + V+ +D      K K    V    +AA K+G   G+ 
Sbjct: 100 LVVAPLQPNAAITTFDKAEKEKIPVVLIDTDANWDKKKSF--VGTGNIAAGKLG---GEY 154

Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203
           + K+++K      + A++        T   RT G+  AL+AAG    ++ ++   +++  
Sbjct: 155 ISKKLKK-----GDEAIIIRGVPGDRTQDERTQGAQKALEAAGI---KVVEIQPANSERE 206

Query: 204 GAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV-DAVSE 262
            A     ++L  HP +K   +   ND   LG V+A +  G K  +II IG++G  DA+  
Sbjct: 207 KAISVMENLLQTHPNIKG--VFCTNDEMALGAVKALQQAGKK--NIISIGVDGSPDALKS 262

Query: 263 LSKAQATG 270
           + +   TG
Sbjct: 263 IKEGGLTG 270


>UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotrichia hofstadii
           F0254 RepID=C9MXF0_9FUSO
          Length = 328

 Score = 42.4 bits (98), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 68/302 (22%), Positives = 130/302 (43%), Gaps = 32/302 (10%)

Query: 24  ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGE----KTLNAIDSLAAS 79
           + +K+  + K  +  ++++    A KAG++LG EV  I  P+ E    K +  +++    
Sbjct: 36  DKIKIELVSKGYQHEFWRSVEAGAKKAGEELGVEVNFIG-PEKETEIGKQVGMVENAINK 94

Query: 80  GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI-GE 138
                 I   DP   + +  KA    + V+  D    N KG   D     +    K+ G 
Sbjct: 95  KVSALGIAALDPDALAVVAKKAMDAKIPVVTFDS---NVKG---DITSSFIATDNKVAGA 148

Query: 139 RQGQELYKEMQKRGWDVKESAVMAITANE--LDTARRRTTGSMDALKAAGFPEKQIYQVP 196
             G++L K +  +G        +AI ++     TA  R  G  +AL  A +P+ +I    
Sbjct: 149 MAGEQLAKLINGKGK-------VAIVSHNPGTTTAIEREAGFREAL--AKYPDIKILNTQ 199

Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256
               D   A      ++  +P++    I G N+ ++ G  +  E +G     +    + G
Sbjct: 200 FSDGDKSKALAITLDIINANPDIAG--IYGTNEPSIFGIAKGVEEKGLTGKVV----LVG 253

Query: 257 VDAVSELSKAQATG-FYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315
           +D+  +L+K    G   G ++  P   GY++ + LY  ++K  +  K  + T  +L+T++
Sbjct: 254 IDSSEDLAKFLEKGVISGLVIQDPYNMGYQTVQQLYK-LSKGEKVEKRID-TGAILVTKE 311

Query: 316 NF 317
           N 
Sbjct: 312 NI 313


>UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Alicyclobacillus acidocaldarius RepID=C8WRM5_ALIAD
          Length = 321

 Score = 42.4 bits (98), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 55/234 (23%), Positives = 94/234 (40%), Gaps = 15/234 (6%)

Query: 20  SAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAA 78
           +A  + +KLGF V     P+F        +  K LG +V I     D    LN ++ L  
Sbjct: 39  TASTKPIKLGFAVSTLNNPFFVAMSNGVQEEAKKLGVQVTILNGNNDPATQLNQVEDLIQ 98

Query: 79  SGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGE 138
                 ++   D +  S  V +A    + VI +D      KG   +    +   + + G+
Sbjct: 99  QHVNAIILNPTDSQSLSTAVEQANRAHIPVITLDRSV--TKG---NVACFIASNSVEAGK 153

Query: 139 RQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTK 198
               EL K +  +G  V+   V+  +A E D    R  G  + +  A  P  ++    T 
Sbjct: 154 MAADELIKALGGKGQVVELQGVIGTSA-EAD----REKGFDEEIGKA--PGIRVVARQTA 206

Query: 199 SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGI 252
           + D   A +   ++L  HP ++   +   ND   LG ++A +  G     I+GI
Sbjct: 207 NFDRSQALNVMQNILQAHPNIQG--VFAQNDEMALGALKAIQEAGKHNIKIVGI 258


>UniRef50_A0QZW4 D-ribose-binding periplasmic protein RbsB n=1 Tax=Mycobacterium
           smegmatis str. MC2 155 RepID=A0QZW4_MYCS2
          Length = 372

 Score = 42.0 bits (97), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 53/235 (22%), Positives = 100/235 (42%), Gaps = 27/235 (11%)

Query: 26  LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDG-EKTLNAIDSLAASGAKGF 84
           +K+ F V+    P+   + + A++ GK LG +V  I+  D   +  N I +  A G    
Sbjct: 92  IKITFSVEGLSHPFLVKQKQLAEETGKRLGAQVNVISANDDVNQQFNDIQTAIAQGTDAL 151

Query: 85  VICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK-PMDTVPLVMMAATKIGERQGQE 143
           ++     +   A++ +A    +        F + KG   ++    V+   +  G++ G E
Sbjct: 152 MMMPATTQGLDAVLKQAEAAQIPY------FFSQKGMLGVEPASQVLAPYSNEGQQLG-E 204

Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203
              E  K   DVK + +  I  ++   AR  +   +  L++  F             + P
Sbjct: 205 WVVEHYKGQEDVKVAIISGIPGDQSSDARVNSF-LLPLLRSCNF---------NVVANQP 254

Query: 204 GAF------DAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGI 252
           G +       AA +ML  +P++   L+ G ND   LGG+ A +  G +  D++G+
Sbjct: 255 GNYRRGDSEKAAQNMLAANPDID--LLFGANDEAALGGIAALKSSGRQGVDVVGL 307


>UniRef50_A7II12 Periplasmic binding protein/LacI transcriptional regulator n=42
           Tax=Bacteria RepID=A7II12_XANP2
          Length = 347

 Score = 41.6 bits (96), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 37/123 (30%), Positives = 59/123 (47%), Gaps = 11/123 (8%)

Query: 1   MHKFTKALAAI-----GLAAVMSQSAM---AENLKLGFLVKQPEEPWFQTEWKFADKAGK 52
           MH + + L A      GLAA     A    A+   +G ++K    P+F    + A+ A  
Sbjct: 1   MHLWPRLLMAASVAWAGLAATSPAGAAEKPADKPIVGIVIKTSTNPFFVKMKEGAEAAAA 60

Query: 53  DLGFEVIKIAVP---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVI 109
            LG E+   A     D +  + A++SL A+GAKG +I   D +    ++ +AR   + VI
Sbjct: 61  RLGLELRSFAGKMDGDTDAQVTAVESLIAAGAKGILITPSDSRAIVPVLEQARAKGILVI 120

Query: 110 AVD 112
           A+D
Sbjct: 121 ALD 123


>UniRef50_Q28MQ1 Periplasmic binding protein/LacI transcriptional regulator n=3
           Tax=Alphaproteobacteria RepID=Q28MQ1_JANSC
          Length = 390

 Score = 40.8 bits (94), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 39/144 (27%), Positives = 63/144 (43%), Gaps = 17/144 (11%)

Query: 174 RTTGSMDALKAA--GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDST 231
           RT G M   +AA   FPE QI    ++ N +  +F   N++L + PE    +   +ND  
Sbjct: 206 RTEGQMAGFRAALPAFPEDQILTFDSR-NTLEESFTQTNNLLSRIPEGVPIMGTAINDQA 264

Query: 232 VLGGVRATEGQGFKAADIIGIGIN-GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEML 290
             G +RA +  G +   ++G+G + G    SE     A G +      P+ +G     + 
Sbjct: 265 ATGILRAAQQDGREMITVVGLGADEGETLASEPDFVAAVGSF------PERYGNSLIPIA 318

Query: 291 YNWVAKDVEPPKFTEVTDVVLITR 314
              +A++       EV D VLI  
Sbjct: 319 MAMLAEE-------EVPDAVLINH 335


>UniRef50_B5ZRZ8 Periplasmic binding protein/LacI transcriptional regulator n=3
           Tax=Rhizobium RepID=B5ZRZ8_RHILW
          Length = 305

 Score = 40.4 bits (93), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 33/106 (31%), Positives = 54/106 (50%), Gaps = 6/106 (5%)

Query: 20  SAMAENLKLGFLVKQPEEPWFQT-EWKFADKAGKDLGFEVIK---IAVPDGEKTLNAIDS 75
           S   E +KLGF+ K P  P+F T E    D A ++ G E+I     +  D E  +  I+S
Sbjct: 20  SLAQEPIKLGFITKFP-VPFFATMENAAKDYAKRNPGVEIIYGQGTSATDIEGQIAQIES 78

Query: 76  LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121
           +   G +G  +   DP + +A+  KA    +KV+ +D+   + KG+
Sbjct: 79  MVTRGVQGIALTPVDPTVSTAL-DKAVASGVKVVLMDNNIPDWKGR 123


>UniRef50_A6W303 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Marinomonas RepID=A6W303_MARMS
          Length = 325

 Score = 40.0 bits (92), Expect = 0.100,   Method: Compositional matrix adjust.
 Identities = 67/295 (22%), Positives = 126/295 (42%), Gaps = 37/295 (12%)

Query: 7   ALAAIGLAAVMSQSAMAENLK-LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP- 64
           ++ A+ L+ ++SQS+  + LK +G  V     P+F    + A    ++L  E +K+ +  
Sbjct: 31  SVIAVSLSPLVSQSSEPQPLKSIGISVADLGNPYFVQLVETASVKAEELAGEPVKMLIRS 90

Query: 65  ---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121
              D ++ +  I+          V+   D    +A+VAKA+   +KVIAVD   VNA+G 
Sbjct: 91  DAYDWQRQIGQINDFIDQKVDLIVLTAADEYKVAAVVAKAQRAGIKVIAVD---VNAQGA 147

Query: 122 ----PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177
                 D V    +A  K+ E+        +  +G  V  + V+  +  E      R  G
Sbjct: 148 DATITTDNVQAGAIACEKLAEK--------INYQGNFVIINGVLVSSVIE------RVAG 193

Query: 178 SMDALKAAGFPEKQIYQVPTKSN---DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLG 234
              AL    +P+  I  +  + N    + G  +A   ++ ++  +    +  +ND T  G
Sbjct: 194 CKSALN--KYPD--ITLLSDRMNGTGSVEGGMEAMTYLMEEYDHIDA--VFTINDPTAFG 247

Query: 235 GVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEM 289
            +RA +    K  + +   I+G    +E+ K Q   +  + +  P     K+ E+
Sbjct: 248 ALRAAQQANRK--EFVLASIDGAPFATEIIKQQDNPWIATAVQRPIPMAEKAIEI 300


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_P02924 L-arabinose-binding periplasmic protein n=117 Ta...   396   e-109
UniRef50_C4XAG8 L-arabinose-binding periplasmic protein n=11 Tax...   389   e-107
UniRef50_Q3JM30 L-arabinose ABC transporter, periplasmic L-arabi...   315   2e-84
UniRef50_Q2T4S7 L-arabinose ABC transporter, periplasmic L-arabi...   296   8e-79
UniRef50_Q987E6 L-arabinose-binding protein n=1 Tax=Mesorhizobiu...   256   1e-66
UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-bindi...   237   3e-61
UniRef50_A6LT79 Periplasmic binding protein/LacI transcriptional...   235   1e-60
UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional...   221   3e-56
UniRef50_B0P682 Putative uncharacterized protein n=1 Tax=Anaerot...   215   1e-54
UniRef50_C7Q3D4 Periplasmic binding protein/LacI transcriptional...   214   4e-54
UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional...   203   9e-51
UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional...   196   7e-49
UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantel...   194   4e-48
UniRef50_B8D164 ABC-type sugar transport system, periplasmic com...   192   1e-47
UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminoc...   187   4e-46
UniRef50_B2JTD1 Periplasmic binding protein/LacI transcriptional...   186   9e-46
UniRef50_A1WNV9 Periplasmic binding protein/LacI transcriptional...   183   8e-45
UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional...   177   4e-43

Sequences not found previously or not previously below threshold:

UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 ...   182   2e-44
UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional...   162   1e-38
UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n...   160   6e-38
UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=...   156   1e-36
UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional...   156   1e-36
UniRef50_B5XZZ5 Sugar ABC transporter, periplasmic sugar-binding...   153   7e-36
UniRef50_C6C3I7 Periplasmic binding protein/LacI transcriptional...   153   9e-36
UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostri...   151   3e-35
UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional...   151   4e-35
UniRef50_Q1M6L8 Putative substrate-binding component of ABC tran...   149   2e-34
UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD            148   4e-34
UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic com...   148   4e-34
UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepI...   147   7e-34
UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium bot...   146   7e-34
UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chtho...   145   2e-33
UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkh...   144   3e-33
UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerot...   144   4e-33
UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Prot...   144   4e-33
UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-bin...   143   6e-33
UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional...   140   5e-32
UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Therm...   140   6e-32
UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional...   140   7e-32
UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gamm...   140   8e-32
UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH             140   8e-32
UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Paste...   139   9e-32
UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S4...   138   3e-31
UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional...   137   5e-31
UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional...   136   1e-30
UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clo...   135   2e-30
UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8...   135   2e-30
UniRef50_A5FXE6 Periplasmic binding protein/LacI transcriptional...   135   2e-30
UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostri...   134   3e-30
UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional...   134   3e-30
UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional...   134   4e-30
UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protei...   134   4e-30
UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Prote...   134   5e-30
UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-b...   134   5e-30
UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional...   134   6e-30
UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Ta...   133   6e-30
UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional...   133   7e-30
UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional...   133   7e-30
UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transpo...   133   7e-30
UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional...   133   8e-30
UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic com...   133   8e-30
UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostri...   133   1e-29
UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotr...   133   1e-29
UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional...   132   1e-29
UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Pr...   132   2e-29
UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic com...   132   2e-29
UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostri...   132   2e-29
UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding...   131   3e-29
UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizo...   131   3e-29
UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional...   131   3e-29
UniRef50_B3T6P5 Putative periplasmic binding protein and sugar b...   131   5e-29
UniRef50_A6W303 Periplasmic binding protein/LacI transcriptional...   130   5e-29
UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminoc...   130   8e-29
UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional...   130   8e-29
UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional...   130   8e-29
UniRef50_Q0SII4 ABC ribose transporter, substrate-binding compon...   129   1e-28
UniRef50_P39325 ABC transporter periplasmic-binding protein ytfQ...   129   1e-28
UniRef50_UPI0001C31742 periplasmic binding protein/LacI transcri...   129   1e-28
UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea l...   129   2e-28
UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostri...   129   2e-28
UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacte...   129   2e-28
UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyado...   128   2e-28
UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthroba...   128   3e-28
UniRef50_C1D9L7 RbsB protein n=1 Tax=Laribacter hongkongensis HL...   128   3e-28
UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional...   128   4e-28
UniRef50_A6DJR9 Periplasmic binding protein/LacI transcriptional...   128   4e-28
UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional...   127   5e-28
UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostri...   127   5e-28
UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional...   127   5e-28
UniRef50_A7II12 Periplasmic binding protein/LacI transcriptional...   127   6e-28
UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding prot...   127   7e-28
UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alph...   126   8e-28
UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_...   126   1e-27
UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding...   126   1e-27
UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea f...   126   1e-27
UniRef50_UPI0001B4C057 putative D-ribose-binding protein compone...   126   1e-27
UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostri...   126   1e-27
UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 T...   125   2e-27
UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n...   125   2e-27
UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional...   125   2e-27
UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional...   125   2e-27
UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostri...   124   3e-27
UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia...   124   4e-27
UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter...   124   4e-27
UniRef50_B2SY92 Periplasmic binding protein/LacI transcriptional...   124   4e-27
UniRef50_B2IIE3 Periplasmic binding protein/LacI transcriptional...   124   4e-27
UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional...   124   4e-27
UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-bindin...   124   5e-27
UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional...   124   5e-27
UniRef50_B2JDH5 Periplasmic binding protein/LacI transcriptional...   124   6e-27
UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Cor...   124   6e-27
UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic suga...   124   6e-27
UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geo...   123   6e-27
UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Prot...   123   8e-27
UniRef50_C0C383 Putative uncharacterized protein n=2 Tax=Clostri...   123   1e-26
UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Ta...   123   1e-26
UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasm...   123   1e-26
UniRef50_C6V848 D-ribose-binding periplasmic protein n=11 Tax=Ga...   123   1e-26
UniRef50_A1WJM2 Periplasmic binding protein/LacI transcriptional...   123   1e-26
UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport ...   122   2e-26
UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding...   122   2e-26
UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional...   122   2e-26
UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales Rep...   122   2e-26
UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protei...   122   2e-26
UniRef50_A9CF36 ABC transporter, substrate binding protein (Suga...   121   2e-26
UniRef50_UPI0001B51147 putative ABC transporter substrate-bindin...   121   2e-26
UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostri...   121   2e-26
UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional...   121   3e-26
UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional...   121   4e-26
UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette tran...   121   5e-26
UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional...   120   6e-26
UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional...   119   9e-26
UniRef50_C0C4T0 Putative uncharacterized protein n=1 Tax=Clostri...   119   9e-26
UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Rumin...   119   1e-25
UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter...   119   1e-25
UniRef50_B9L479 Periplasmic binding protein/LacI transcriptional...   119   1e-25
UniRef50_C0CHG6 Putative uncharacterized protein n=1 Tax=Blautia...   119   1e-25
UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-bindi...   119   1e-25
UniRef50_Q7NV24 Probable ribose ABC transporter, substrate bindi...   119   2e-25
UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothe...   119   2e-25
UniRef50_A8RJP3 Putative uncharacterized protein n=1 Tax=Clostri...   119   2e-25
UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gamma...   119   2e-25
UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasm...   118   2e-25
UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostr...   118   2e-25
UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional...   118   3e-25
UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional...   118   3e-25
UniRef50_B0PGZ6 Putative uncharacterized protein n=1 Tax=Anaerot...   118   3e-25
UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-bindi...   118   3e-25
UniRef50_B8ZUE5 Putative D-ribose-binding protein n=2 Tax=Mycoba...   118   3e-25
UniRef50_B1Y299 Periplasmic binding protein/LacI transcriptional...   118   4e-25
UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacte...   118   4e-25
UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional...   117   5e-25
UniRef50_A9HFZ1 D-ribose-binding protein n=1 Tax=Gluconacetobact...   117   5e-25
UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional...   117   7e-25
UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Ba...   116   8e-25
UniRef50_A0QZW4 D-ribose-binding periplasmic protein RbsB n=1 Ta...   116   9e-25
UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sora...   116   9e-25
UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional...   116   1e-24
UniRef50_B7GJK7 ABC-type sugar transport system, periplasmic com...   116   1e-24
UniRef50_C1TNC1 Monosaccharide ABC transporter substrate-binding...   116   1e-24
UniRef50_A1STY3 Transcriptional regulator, periplasmic binding p...   116   2e-24
UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostri...   115   2e-24
UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobact...   115   2e-24
UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Rei...   115   2e-24
UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional...   115   3e-24
UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional...   114   3e-24
UniRef50_A3CKH1 Periplasmic sugar-binding protein (Ribose porter...   114   3e-24
UniRef50_C6D2L3 Periplasmic binding protein/LacI transcriptional...   114   3e-24
UniRef50_Q029E0 Transcriptional regulator, LacI family n=1 Tax=C...   114   3e-24
UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostri...   114   5e-24
UniRef50_C4FY38 Putative uncharacterized protein n=1 Tax=Catonel...   114   5e-24
UniRef50_C3MI72 Putative ribose ABC transporter, ribose-binding ...   113   7e-24
UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyr...   113   8e-24
UniRef50_Q221W3 Periplasmic binding protein/LacI transcriptional...   113   8e-24
UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostri...   113   1e-23
UniRef50_UPI000185D1D6 putative DNA-binding response regulator/s...   112   2e-23
UniRef50_A5D1M8 ABC-type sugar transport system, periplasmic com...   112   2e-23
UniRef50_C0C300 Putative uncharacterized protein n=2 Tax=Clostri...   112   2e-23
UniRef50_A0R773 Sugar ABC transporter substrate-binding protein ...   112   2e-23
UniRef50_C0EIT8 Putative uncharacterized protein n=1 Tax=Clostri...   112   2e-23
UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostri...   112   2e-23
UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n...   112   2e-23
UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional...   112   2e-23
UniRef50_C0D949 Putative uncharacterized protein n=1 Tax=Clostri...   111   3e-23
UniRef50_A8RM26 Putative uncharacterized protein n=1 Tax=Clostri...   111   3e-23
UniRef50_Q7MCP2 ABC-type sugar transport system, periplasmic com...   111   3e-23
UniRef50_UPI00016C56B8 bifunctional carbohydrate binding and tra...   111   3e-23
UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpe...   111   3e-23
UniRef50_C6D2L0 Periplasmic binding protein/LacI transcriptional...   111   3e-23
UniRef50_A8RTB0 Putative uncharacterized protein n=1 Tax=Clostri...   111   3e-23
UniRef50_C5ESA7 Predicted protein n=2 Tax=Clostridiales bacteriu...   111   4e-23
UniRef50_Q7P137 Probable ribose ABC transporter, substrate bindi...   111   4e-23
UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional...   111   4e-23
UniRef50_A9BGQ4 Periplasmic binding protein/LacI transcriptional...   111   4e-23
UniRef50_B1YL86 Periplasmic binding protein/LacI transcriptional...   111   4e-23
UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostri...   111   5e-23
UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostri...   111   5e-23
UniRef50_B5GKD2 D-ribose ABC transporter permease protein n=1 Ta...   111   5e-23
UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-bindin...   110   6e-23
UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostri...   110   6e-23
UniRef50_C5ET05 D-ribose-binding protein n=1 Tax=Clostridiales b...   110   6e-23
UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE      110   8e-23
UniRef50_C9LY79 Periplasmic ribose-binding protein n=1 Tax=Selen...   110   8e-23
UniRef50_B9J8H1 Fructose ABC transporter n=23 Tax=Bacteria RepID...   110   8e-23
UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Glu...   110   8e-23
UniRef50_B5CR03 Putative uncharacterized protein n=1 Tax=Ruminoc...   110   9e-23
UniRef50_C0XA52 Periplasmic sugar-binding protein n=3 Tax=Lactob...   110   9e-23
UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional...   109   9e-23
UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotro...   109   1e-22
UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3...   109   1e-22
UniRef50_A1WJI7 Periplasmic binding protein/LacI transcriptional...   109   1e-22
UniRef50_B1LAH5 Periplasmic binding protein/LacI transcriptional...   109   2e-22
UniRef50_C0C2H6 Putative uncharacterized protein n=1 Tax=Clostri...   109   2e-22
UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding...   109   2e-22
UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacte...   109   2e-22
UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostri...   109   2e-22
UniRef50_A5V1R8 Periplasmic binding protein/LacI transcriptional...   109   2e-22
UniRef50_A0JW81 ABC-type sugar transport system periplasmic comp...   109   2e-22
UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-...   108   2e-22
UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional...   108   2e-22
UniRef50_C1YRI6 Monosaccharide ABC transporter substrate-binding...   108   2e-22
UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodo...   108   2e-22
UniRef50_C5EPY5 ABC-type sugar transport system n=2 Tax=Clostrid...   108   2e-22
UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional...   108   2e-22
UniRef50_B1YXY0 ABC-type sugar transport system periplasmic comp...   108   3e-22
UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional...   108   3e-22
UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clo...   108   3e-22
UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional...   108   3e-22
UniRef50_B5YAA5 ABC transporter sugar-binding protein n=2 Tax=Di...   108   3e-22
UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional...   108   3e-22
UniRef50_A8RPB7 Putative uncharacterized protein n=1 Tax=Clostri...   108   4e-22
UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding...   107   5e-22
UniRef50_C0C2X7 Putative uncharacterized protein n=1 Tax=Clostri...   107   5e-22
UniRef50_B2JP41 Periplasmic binding protein/LacI transcriptional...   107   5e-22
UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_...   107   5e-22
UniRef50_D2QME7 Two component transcriptional regulator, AraC fa...   107   6e-22
UniRef50_C5CZB4 Periplasmic binding protein/LacI transcriptional...   107   6e-22
UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette tr...   107   7e-22
UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transc...   107   7e-22
UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor h...   107   7e-22
UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI fa...   107   7e-22
UniRef50_C7IMM2 Periplasmic binding protein/LacI transcriptional...   107   7e-22
UniRef50_A1SYE6 Transcriptional regulator, periplasmic binding p...   107   8e-22
UniRef50_D1AIH6 Galactose-binding protein n=3 Tax=Bacteria RepID...   106   8e-22
UniRef50_C9Y9X5 Putative uncharacterized protein n=1 Tax=Curviba...   106   1e-21
UniRef50_UPI00019034CB methyl-accepting chemotaxis protein n=1 T...   106   1e-21
UniRef50_B9XKI8 Periplasmic binding protein/LacI transcriptional...   106   1e-21
UniRef50_C5EU51 D-galactose-binding periplasmic protein n=4 Tax=...   106   1e-21
UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding pro...   106   1e-21

>UniRef50_P02924 L-arabinose-binding periplasmic protein n=117
           Tax=Gammaproteobacteria RepID=ARAF_ECOLI
          Length = 329

 Score =  396 bits (1018), Expect = e-109,   Method: Composition-based stats.
 Identities = 329/329 (100%), Positives = 329/329 (100%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK
Sbjct: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60

Query: 61  IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120
           IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG
Sbjct: 61  IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120

Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180
           KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD
Sbjct: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180

Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240
           ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE
Sbjct: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240

Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300
           GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP
Sbjct: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300

Query: 301 PKFTEVTDVVLITRDNFKEELEKKGLGGK 329
           PKFTEVTDVVLITRDNFKEELEKKGLGGK
Sbjct: 301 PKFTEVTDVVLITRDNFKEELEKKGLGGK 329


>UniRef50_C4XAG8 L-arabinose-binding periplasmic protein n=11 Tax=Enterobacteriaceae
           RepID=C4XAG8_KLEPN
          Length = 326

 Score =  389 bits (999), Expect = e-107,   Method: Composition-based stats.
 Identities = 299/326 (91%), Positives = 316/326 (96%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGF+VIK
Sbjct: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFDVIK 60

Query: 61  IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120
           IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVI VDDQFVNAKG
Sbjct: 61  IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVITVDDQFVNAKG 120

Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180
           KPM++VPLVMMAA++IG RQGQELYKEMQKRGWDVK++AVMAITA+ELDTARRRTTGS+D
Sbjct: 121 KPMESVPLVMMAASEIGARQGQELYKEMQKRGWDVKDTAVMAITADELDTARRRTTGSID 180

Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240
           ALKAAGFP+ QIY+VPTKSNDIPGAFDA NSMLVQHP+VKHWLIVGMND+TVLGGVRATE
Sbjct: 181 ALKAAGFPDAQIYRVPTKSNDIPGAFDAGNSMLVQHPQVKHWLIVGMNDNTVLGGVRATE 240

Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300
           GQGFKA D+IGIGINGVDAV+ELSKAQ TGFYGSLLPSPD+HGYK+SEMLYNWV K VEP
Sbjct: 241 GQGFKAPDVIGIGINGVDAVNELSKAQPTGFYGSLLPSPDIHGYKTSEMLYNWVTKGVEP 300

Query: 301 PKFTEVTDVVLITRDNFKEELEKKGL 326
           PKFT VTDVVLITRDNFKEEL KKGL
Sbjct: 301 PKFTAVTDVVLITRDNFKEELAKKGL 326


>UniRef50_Q3JM30 L-arabinose ABC transporter, periplasmic L-arabinose-binding
           protein n=105 Tax=Bacteria RepID=Q3JM30_BURP1
          Length = 456

 Score =  315 bits (806), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 141/302 (46%), Positives = 200/302 (66%), Gaps = 2/302 (0%)

Query: 26  LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFV 85
           +K+GF+VKQP++PWFQ EW+FA++A KD  F ++KIA P GEK   A+DSLAA  A+G +
Sbjct: 156 VKIGFVVKQPDDPWFQDEWRFAEQAAKDKHFTLVKIAAPSGEKVSTALDSLAAQKAQGVI 215

Query: 86  ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145
           IC PD KLG  I AKAR Y MK+++VDDQ V+ +G P+  VP + ++A +IG + G  + 
Sbjct: 216 ICAPDVKLGPGIAAKARRYGMKLMSVDDQLVDGRGAPLADVPHMGISAYRIGRQVGDAIA 275

Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205
            E ++RGW+  E  V+ +  ++L TAR RTTG++DALKAAGF    +   P  + D  GA
Sbjct: 276 AEAKRRGWNPAEVGVLRLAYDQLPTARERTTGAVDALKAAGFAAANVVDAPEMTADTEGA 335

Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVD-AVSELS 264
           F+AAN    +H   KHW+  G ND T +G VRA EG+G  A D+I +GING   A++E +
Sbjct: 336 FNAANIAFTKHRNFKHWVAFGSNDDTTVGAVRAGEGRGIGADDMIAVGINGSQVALNEFA 395

Query: 265 KAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKK 324
           K + TGF+GS+L +P +HGY +S  +Y+W+ ++  PP    +T   LITR N K    + 
Sbjct: 396 KPKPTGFFGSILLNPRLHGYDTSVNMYDWITQNRAPPPVV-LTSGTLITRANEKTARAQL 454

Query: 325 GL 326
           GL
Sbjct: 455 GL 456


>UniRef50_Q2T4S7 L-arabinose ABC transporter, periplasmic L-arabinose-binding
           protein n=33 Tax=Proteobacteria RepID=Q2T4S7_BURTA
          Length = 340

 Score =  296 bits (757), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 147/324 (45%), Positives = 206/324 (63%), Gaps = 4/324 (1%)

Query: 6   KALAAIGLAAVMSQSAMAEN--LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV 63
            A AA+ +A +   +A   +  LK+GFLVK PE+ WF  E K A   G+  GF V+ I  
Sbjct: 18  AAFAALVIAPLAMPAATRADTPLKIGFLVKMPEQAWFINEQKAATALGQKEGFSVVNIGT 77

Query: 64  PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPM 123
           PDGEK L AID+L + GA+GFVIC PD +LG AI A+A+ YDMK + VDDQ V++ GKP+
Sbjct: 78  PDGEKVLAAIDNLGSQGAQGFVICAPDVRLGPAIAARAKRYDMKFVTVDDQLVDSSGKPL 137

Query: 124 DTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALK 183
             VP + M+ATKIG + GQ +  EM+KRGW  +E   + +T  EL TA+ RT G+  AL 
Sbjct: 138 ANVPHLGMSATKIGNQVGQAIADEMKKRGWKPEEVGALRVTNYELPTAKLRTDGATQALL 197

Query: 184 AAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQG 243
           A+GF ++ I+  P K+ D  G F AA  +L +HP VK W+I  +N+ TVLG VRATE   
Sbjct: 198 ASGFKKENIFDAPQKTTDDEGGFSAAAPVLARHPNVKKWVIFALNEETVLGAVRATEQLH 257

Query: 244 FKAADIIGIGINGV-DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302
             AAD+IG+GING  +A +E  K + TGF+G++  S   HG +S++ L +W+     PP 
Sbjct: 258 IPAADVIGVGINGAGEAFAEFQKKEPTGFFGTIAVSSTNHGKQSAQNLVDWIRSGKAPPA 317

Query: 303 FTEVTDVVLITRDNFKEELEKKGL 326
            T+ T   L+TR+N++    + G+
Sbjct: 318 DTQ-TSGKLMTRENWQAVRAELGI 340


>UniRef50_Q987E6 L-arabinose-binding protein n=1 Tax=Mesorhizobium loti
           RepID=Q987E6_RHILO
          Length = 327

 Score =  256 bits (653), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 107/329 (32%), Positives = 154/329 (46%), Gaps = 10/329 (3%)

Query: 1   MHKFTKALA--AIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV 58
           M   TKALA  AI  A +M+ +A A+++K+G++ K  E PWF  E   A KA +  G   
Sbjct: 1   MKTTTKALATVAILAAGLMAGAASADDIKIGYINKMGEHPWFVAEVGGAKKAAEAAGATF 60

Query: 59  IKIAVP-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117
           +   V  D   T+   D++   G KG  I  PD  LG  I  KA+   + ++AVDD    
Sbjct: 61  VSQDVQFDSNLTITTFDTMVGDGVKGIAIVVPDKALGPVIAEKAKAAKIPLVAVDDDIYY 120

Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177
             G     VP V M A  IG R G+EL K  +  GW  KE  + +I   + DT  +R  G
Sbjct: 121 QDGT---QVPYVGMNAYNIGARVGEELAKLYKADGWAGKEVRIASIEDRKADTCMQRNKG 177

Query: 178 SMDALKAA--GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG 235
           + +A   A   F    I +VP   N +  A D   + L  +P V +W+    ND  VLG 
Sbjct: 178 AEEAFLKAVPDFKPANILRVPY-DNTMVNAIDVMTTTLTANPGVTNWIFYSCNDDGVLGA 236

Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295
            RA E  G+ A   +GIGI+G  A       + + F G++  +   HG  + ++L   + 
Sbjct: 237 ARALENAGYAADQGMGIGIDGSRACEAFGSGKPSAFRGTMWLNSANHGALAVKILLASIK 296

Query: 296 KDVEPPKFTEVTDVVLITRDNFKEELEKK 324
              + P     TD   IT  NF  + + K
Sbjct: 297 DGTKLP-VQSFTDPEYITAGNFASDYKAK 324


>UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-binding protein n=7
           Tax=Bacteria RepID=B9KA11_THENN
          Length = 326

 Score =  237 bits (605), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 67/302 (22%), Positives = 120/302 (39%), Gaps = 14/302 (4%)

Query: 17  MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDS 75
           ++Q       K+  ++     PWF    + A +  + LG+E  I  +  D  K     D+
Sbjct: 25  LAQEQQKPKGKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDA 84

Query: 76  LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135
           + A+G    +    D     A V +A+   + V  VD + +NA+G     V  +      
Sbjct: 85  IIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVD-RGINARGL---AVAQIYSDNYY 140

Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANEL-DTARRRTTGSMDALKAAGFPEKQIYQ 194
            G   G+   K ++++  D KE     +           R+ G    +    +PE ++  
Sbjct: 141 GGVLMGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQ--YPEFKMVA 198

Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254
             +   D   A+     +L  HPE+K   I   ND+  LG ++A E  G    DI   G 
Sbjct: 199 QQSAEFDRDTAYKVTEQILQAHPEIK--AIWCGNDAMALGAMKACEAAGRT--DIYIFGF 254

Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314
           +G + V    K +      +++  P +    + E    ++  +   P+   VT V L+TR
Sbjct: 255 DGAEDVINAIK-EGKQIVATIMQFPKLMARLAVEWADQYLRGERSFPEIVPVT-VELVTR 312

Query: 315 DN 316
           +N
Sbjct: 313 EN 314


>UniRef50_A6LT79 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Clostridium beijerinckii NCIMB 8052
           RepID=A6LT79_CLOB8
          Length = 331

 Score =  235 bits (600), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 72/320 (22%), Positives = 143/320 (44%), Gaps = 12/320 (3%)

Query: 5   TKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE--VIKIA 62
             + A         QS+   +L +  + K  +E WFQ E + A      +G +  +   A
Sbjct: 13  LSSFAFSCDTTTSKQSSKKSDLVIAVIYKTLDEAWFQEESEAAKNKALAMGAKDVITIDA 72

Query: 63  VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122
             + +  L+A+D+L      G +IC PD KL    + + +  ++ VIA DD   + +G  
Sbjct: 73  KMNPDVYLSALDNLITQKVDGILICVPDQKLSKITIDRCKKSNIAVIACDDPLTDDEGNY 132

Query: 123 MDTVPLVMMAATKIGERQGQELYKEM--QKRGWDVKESAVMAITANELDTARRRTTGSMD 180
           +   P V + + +IG      +   +    +  D   S ++ ++ + + +   RT G ++
Sbjct: 133 IA--PFVGIDSNQIGRDMTSLMVDYLEKNNKLSDPNSSGLLLMSMDSVSSCIPRTEGQLE 190

Query: 181 ALK--AAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238
             K     FP + I+Q          +F +A S +  +  +K+W ++  N++  +G ++A
Sbjct: 191 TFKDRLPSFPRENIFQAEYNGQS-EKSFYSAASTITSNKNIKNWFVMSANEAGTIGAIKA 249

Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
            +  G  A + + +G+ G  A  E  K  +     + + + +V    + E++ N +    
Sbjct: 250 LDQSGL-AENAVAVGVGGYVAKDEFQKQNSPLIASAYISATEVGEIAAQELMENLLLNKN 308

Query: 299 EPPKFTEVTDVVLITRDNFK 318
            P K+  V D V IT+DN+K
Sbjct: 309 IPDKYL-VKDKV-ITKDNYK 326


>UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Proteobacteria RepID=A6VWG6_MARMS
          Length = 314

 Score =  221 bits (563), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 68/319 (21%), Positives = 130/319 (40%), Gaps = 19/319 (5%)

Query: 2   HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI 61
             F K+  A  L  + S S +A N  +  +    + P+F+   + AD   K+LG++ +  
Sbjct: 4   KTFLKSCLAATLLTLASTSVLASNGLIAIITPSHDNPFFKAGAEGADAKAKELGYDTLVA 63

Query: 62  AVP-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120
           +   D  K    I++  A  AK  ++   D       + + +   +    + D+ +N  G
Sbjct: 64  SHDGDVNKQNQLIETAIARQAKAVILDNADADASIGSLERLKKAGIPAF-LYDREINKTG 122

Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDT-ARRRTTGSM 179
             +  +    ++    G +   E + E+   G +  E     +   E DT A+ R+ G  
Sbjct: 123 IAVTQI----VSNNFQGAQLAGEKFAELMGDGGEYVE-----LLGPESDTNAQVRSEGFH 173

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
           D L    FPE ++    + +     AF    S+L  +P +K   ++  NDS  LG   A 
Sbjct: 174 DILD--NFPEFKMVARQSANWSQTEAFSRMESILQANPNIKG--VITGNDSMALGAEAAL 229

Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
           +  G K  D+  +G +G+D V + S  + +    +++        + +E    ++     
Sbjct: 230 QAAGRK--DVFIVGFDGLDYVRD-SIIKGSNIKATIMQPAYAQAQRVAEQADLYIRTGST 286

Query: 300 PPKFTEVTDVVLITRDNFK 318
                ++ D VLI   N K
Sbjct: 287 GLPEKQLMDCVLIDSSNAK 305


>UniRef50_B0P682 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis
           DSM 17241 RepID=B0P682_9FIRM
          Length = 361

 Score =  215 bits (548), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 69/289 (23%), Positives = 123/289 (42%), Gaps = 8/289 (2%)

Query: 19  QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKT-LNAIDSLA 77
            S    +  +  + K     WF  E   + K  +D G+    +       T ++ ++++ 
Sbjct: 54  DSVSTGDKTIVGIYKMGTATWFIQEGAASQKVVEDAGYTWKFMDCNQNAATYMDLLNTVI 113

Query: 78  ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137
           A    G ++C PD  L    V       + VIAVDD      G  +   P V +    IG
Sbjct: 114 ADKVDGVLVCLPDQNLSQTTVDMLTEAGIPVIAVDDALETEDGTKLA--PWVGIDGFSIG 171

Query: 138 ERQGQELYKEMQKRGWDVKES-AVMAITANELDTARRRTTGSMDALKAA--GFPEKQIYQ 194
           +  G+     +++      ES  ++ +TA+ + +   RT G + AL      FPE +I++
Sbjct: 172 KAAGEWGVNYIKENNLADDESFGILLMTADTVSSCVPRTEGELAALSEGLPDFPESRIFR 231

Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254
               ++   G   AAN+++  HPE+K WL++G++D +  G  RA E  G  A D + +G+
Sbjct: 232 ADCDTSAEDGN-QAANAVITGHPEIKKWLVLGVSDESSQGAARAIESAGLGA-DSMVMGL 289

Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKF 303
            G     E     +     +   + DV G  + EM+ +       P  +
Sbjct: 290 GGYLCPDEFENPDSCFRAAAYFSARDVGGTAAQEMVDHLENGTEIPETY 338


>UniRef50_C7Q3D4 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Actinomycetales RepID=C7Q3D4_CATAD
          Length = 347

 Score =  214 bits (544), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 69/303 (22%), Positives = 129/303 (42%), Gaps = 8/303 (2%)

Query: 24  ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV-PDGEKTLNAIDSLAASGAK 82
             + L +L KQ ++ +F  E   A      LG  +  + +  D  +T++ + +  A  + 
Sbjct: 42  GKITLTYLQKQGDQQYFIDEADGAKAKAAQLGIGLTVVNLGDDANQTVSDVQAAVAQKSS 101

Query: 83  GFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDT-----VPLVMMAATKIG 137
           G +I  PDP +G  +V  A+   + ++  DDQ       P        VP V  + T++G
Sbjct: 102 GLIIVPPDPAVGPQVVQLAKDAGIPLLTSDDQVCTNGPDPASCATANLVPRVGFSGTQMG 161

Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT 197
              G++  +   K GW+  ++  ++    ++     R   +  +  A      Q   V T
Sbjct: 162 TDVGKKAAELFVKAGWNAADTRTISAWKQDVTVCTDRVKAAKTSFAAGAGAAVQDIDVAT 221

Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV 257
             N   GA D   + +  +P VKHW++ G ND  V GGV A +  G  A ++IG+G+   
Sbjct: 222 -DNTPTGAQDKVAATITANPGVKHWVLWGCNDENVQGGVTALQNAGVSADNVIGVGLGAY 280

Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317
            A  +   +Q TG   +L  S    G  + + +Y+ +      P+  +     ++    +
Sbjct: 281 LACKDWGSSQPTGMKAALYISGKNIGALAVQTMYDKLKNGKAFPQEADA-PTTMVDATTW 339

Query: 318 KEE 320
           +  
Sbjct: 340 QSA 342


>UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional regulator n=23
           Tax=Bacteria RepID=C6B4I0_RHILS
          Length = 313

 Score =  203 bits (515), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 64/292 (21%), Positives = 123/292 (42%), Gaps = 20/292 (6%)

Query: 28  LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPD-GEKTLNAIDSLAASGAKGFVI 86
           +  +    + P+F+ E   A+   K+LG+E + +   D   K    ID+    GAK  ++
Sbjct: 30  IAIITPAHDNPFFKAEAVGAEAKAKELGYETLLMTHDDDANKQSEMIDTAIGRGAKAIIL 89

Query: 87  CTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYK 146
                    A V KA+   +    +D + +NA G  +  +        ++G    QE  K
Sbjct: 90  DNAGADASVAAVKKAKDAGIPSFLID-REINATGVAVAQIVSNNYQGAQLG---AQEFVK 145

Query: 147 EMQKRGWDVKESAVMAITANELDT-ARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205
            M ++G  V+      +   E DT A  R+ G  D +    +P+ +     + +     A
Sbjct: 146 LMGEKGNYVE------LVGKESDTNAGIRSQGYHDVID--DYPDLKSVAKQSANWSQTEA 197

Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSK 265
           +    ++L  +P++K   ++  ND+  +G + A +  G K  D+I +G +G + V +  K
Sbjct: 198 YSKMETILQANPDIKG--VISGNDTMAMGAIAALQAAGRK--DVIVVGFDGSNDVRDSIK 253

Query: 266 AQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317
             + G   ++L         + E    ++     P +  ++ D VLI  DN 
Sbjct: 254 --SGGIKATVLQPAYAQAQLAVEQADAYIKNKTTPKEEKQLMDCVLINADNA 303


>UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Arthrobacter chlorophenolicus A6 RepID=B8HJG2_ARTCA
          Length = 319

 Score =  196 bits (499), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 85/319 (26%), Positives = 131/319 (41%), Gaps = 27/319 (8%)

Query: 8   LAAIGLAAVMS----QSAMAENL-KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKI 61
           LAA+ LAA  S     +A  + + K+G +V+    P+F    K A +A   +G     + 
Sbjct: 17  LAALSLAACSSGDTQPAAKPKKIEKIGLMVQDMSNPFFSAMDKGAKEAAASIGATANTQD 76

Query: 62  AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121
           A  D       ID+    G    VI   D       + +A+   + VIAVD    +A   
Sbjct: 77  AQLDLANQNTQIDTFIQQGVNLIVISAVDENGIQPAIERAKQAGIIVIAVDTPAKSADAV 136

Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181
                  VM  A + GE+  Q L+++M  +G       V+ +    L T R R TG  + 
Sbjct: 137 -------VMTDAVQAGEKSCQYLFEQMGGKGN------VLLVDGTPLQTIRDRITGCNNV 183

Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241
           +K   FP  ++       ND          ML   P+V+   I GMND + LG V A + 
Sbjct: 184 VKK--FPGIKVVGQQASKNDRASGLAVTTDMLTATPDVQG--IFGMNDPSALGAVLAVQQ 239

Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301
              KA  +   G++G        K   + F G+   +P     K+ E+  N +  D +PP
Sbjct: 240 A-HKAGTVKVTGVDGSPEAVAELKQSGSPFMGTATQNPAEMVRKAVEVAQNII--DNKPP 296

Query: 302 KFTEV-TDVVLITRDNFKE 319
             T +     L+TRD   +
Sbjct: 297 AETTILIPSELVTRDTVSQ 315


>UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantella formatexigens
           DSM 14469 RepID=C6LH93_9FIRM
          Length = 362

 Score =  194 bits (493), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 62/321 (19%), Positives = 117/321 (36%), Gaps = 25/321 (7%)

Query: 15  AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTLN 71
           A  +   +  +  +  +VK    P+         KA +D+GFE + ++       E  + 
Sbjct: 48  AATTDVKVNGDYTIAMIVKNNTNPFMNGVLNGFSKAAEDIGFEAMLLSPQTADSNEDQVR 107

Query: 72  AIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMM 131
            ++ +  SG     I   D       + KA    + V+         +G   +T  +   
Sbjct: 108 LVEDMIQSGVDAICIHPVDSNGIVPALEKAWDAGIPVLV--------QGTQANTDKIYGW 159

Query: 132 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ 191
             TK  +     L  E      D K + V      +   A      +    +   +P+  
Sbjct: 160 YGTKYADEA--TLIAEYLAEKLDYKGNVVYITGPQQAQNAIDEINATHAVFEK--YPDLN 215

Query: 192 IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA-DII 250
           + +    + +   +     +++ ++ E     ++G ND   +G + A E  G+K   +  
Sbjct: 216 LIEEQPGNFNRATSMSVMENLIQKYSEDDIDWVIGGNDECAMGAIAAMENAGWKLGFEDG 275

Query: 251 GIGINGVDAVSELSKAQATG-FYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK------F 303
           GIG++G+D   + S A   G    S+ P P   GY  +  L N++      P+      F
Sbjct: 276 GIGVSGIDCNKDASYAMQEGTLTVSVNPDPVSLGYIGAAFLVNYLNDGDLFPEYVAWPDF 335

Query: 304 TEVTDVVLITR--DNFKEELE 322
               DVV+     DN+ E L 
Sbjct: 336 QTADDVVIDASNIDNYIENLA 356


>UniRef50_B8D164 ABC-type sugar transport system, periplasmic component n=6
           Tax=Bacteria RepID=B8D164_HALOH
          Length = 308

 Score =  192 bits (488), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 66/287 (22%), Positives = 116/287 (40%), Gaps = 19/287 (6%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSL 76
           SQ A+A+++ +G  +   + P++    +  +KA  D G E+I  IA  D  K ++ ++  
Sbjct: 21  SQFALADDITIGASLLTQQHPFYVQLKQAMEKAADDNGVELIVSIANQDLNKQISDVEDF 80

Query: 77  AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136
              G    V+   D K     + KA+   + VI VD   ++A+G  +D    V       
Sbjct: 81  IVRGVDAIVLSPVDSKGVVGAIIKAKRAGIPVITVD---ISAEGVEVDA--HVATDNYYG 135

Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196
           G   G+ + K +  +G       V  I    + + R R  G  +A+    +P  +I  + 
Sbjct: 136 GRIAGETMAKVLNGKGQ------VAIIDYPVVQSVRDRVAGFKEAVSK--YPGIEIVAIQ 187

Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256
                 P A + A ++L  HPEV    I G  D   L  V A +  G +  D+  IG +G
Sbjct: 188 PG-ITRPEALNTAQNILQAHPEVDG--IFGFGDDAALASVVAVKSAGME-DDVKVIGFDG 243

Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKF 303
           ++      K + + F   +   P   G    E     +  +    + 
Sbjct: 244 MEEARNAVKKEES-FVAVVCQYPGEMGRLGLETALRVIKGEKVEKEI 289


>UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC
           29174 RepID=A5ZRB9_9FIRM
          Length = 333

 Score =  187 bits (475), Expect = 4e-46,   Method: Composition-based stats.
 Identities = 73/323 (22%), Positives = 132/323 (40%), Gaps = 25/323 (7%)

Query: 2   HKFTKALAAIGLAAVMSQSAMAEN---------LKLGFLVKQPEEPWFQTEWKFADKAGK 52
            + +  L+   +  +M Q A+A N         L +  + +   +P+        +KA K
Sbjct: 3   KRMSVVLSMALVMGIMGQCAIAVNAASKTDDDTLNITLINQGSGQPYIAAYKNCFEKAEK 62

Query: 53  DLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAV 111
           DL  +V +     D  +  NAI +  +SGA G VI   DP      V +A    ++V A+
Sbjct: 63  DLNIKVNLVDGGWDANQQANAIQNAISSGADGIVISPVDPSAVCTYVDEALDAGIEVCAL 122

Query: 112 DDQFVNAKGK---PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANEL 168
             Q      +     +TV LV    T++G R   ++  E   R   +   A++  T    
Sbjct: 123 TTQIGTGDAEDPVYPETVGLVGHIETEVG-RTAMDIAAEALDRSGKI---AIIEGTPGMS 178

Query: 169 DTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMN 228
           DT   R  G  +  +   +P+ ++         +  A+ A  +++  +PEV+  L++  +
Sbjct: 179 DTEG-RKKGIDE--ENKEYPDIEVVSRVCGEWVVDKAYTAMQNIIQSNPEVE--LVICHS 233

Query: 229 DSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSE 288
           D+  +G  +A E        +  +GI G     +L K      YG+++  P+   Y + E
Sbjct: 234 DNMAVGAAKALEDADMT-DKVKIVGIGGSKDALDLIKK--GEIYGTIMYVPETEAYTALE 290

Query: 289 MLYNWVAKDVEPPKFTEVTDVVL 311
                V  + E   F  V D+ L
Sbjct: 291 ATAKVVRGEAEKETFYNVQDLPL 313


>UniRef50_B2JTD1 Periplasmic binding protein/LacI transcriptional regulator n=3
           Tax=Burkholderia phymatum STM815 RepID=B2JTD1_BURP8
          Length = 322

 Score =  186 bits (472), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 78/329 (23%), Positives = 121/329 (36%), Gaps = 22/329 (6%)

Query: 1   MHKFTKALAAIGLA---AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE 57
           M K  K L  IGLA   A M+  A A+ + LG++    + P+     +  + A K  G +
Sbjct: 1   MKKCFKKLGLIGLAGAMAFMTDVAAAKEITLGYVAAGMQYPFNVAAARGFEAAAKAAGVK 60

Query: 58  VIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116
            I   A    EK  NA+D L A    G  +   D  +  + V +A  +++  +AV  Q  
Sbjct: 61  TIVLDAKTSVEKQGNAVDDLIAQKVDGIAVLPIDAVVAQSWVERATSHNIPFVAVATQIG 120

Query: 117 NAKGKPMDTV-----PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTA 171
           + +   ++ V      LV      +G    Q   K + K   D      +   A    T 
Sbjct: 121 DPQKHAINDVYPKLTALVASDEVHVGTDAAQIAAKLLPK---DRTAKIAIVEGAPGYPTV 177

Query: 172 RRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDST 231
            + T G  + L  AG    QI                  ++LV HP+V   LI    D  
Sbjct: 178 WQVTKGFKEGLDKAGVKY-QIVASQPTDWTPEKGESVCQNILVAHPDVD--LIFNQADDM 234

Query: 232 VLGGVRATEGQGFKAADIIGIGIN-GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEML 290
           V+G  RA    G  A  +   G   G++AV      +     G++   P   G ++ + L
Sbjct: 235 VIGCARAVRAAGSHAKLVSRGGSKLGINAV------KVGDVDGTVCIQPGKMGERAFKAL 288

Query: 291 YNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
           Y  V     P       D   +T+     
Sbjct: 289 YAAVTDPNAPKAKFIDVDTPQVTKATLST 317


>UniRef50_A1WNV9 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Proteobacteria RepID=A1WNV9_VEREI
          Length = 374

 Score =  183 bits (464), Expect = 8e-45,   Method: Composition-based stats.
 Identities = 69/323 (21%), Positives = 135/323 (41%), Gaps = 21/323 (6%)

Query: 8   LAAIGLAAVMSQSAMAENL--KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVP 64
           +AA+ LAA  +  A A N+  K+G++       W+Q   K     GKDLG EV ++ A  
Sbjct: 40  VAAVTLAATFAAPAQARNMPRKIGYVTNYATHEWYQNVIKGMKAHGKDLGIEVEVQDANL 99

Query: 65  DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124
           D  K + A +   A G    +I   + +    ++ KA+  ++ V+         +G P+ 
Sbjct: 100 DIAKQVAAAEDFIAKGVDVLIITPVNEEGVVPLLRKAKAANIPVVL--------EGNPVK 151

Query: 125 -TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALK 183
               +V +     G   G E  K  +K+     +  VM +    L     R+ G MD ++
Sbjct: 152 GMTTMVAICDYDTGYFSGIEAGKYAKKKLGGTAK--VMNVGLPLLSATVLRSKGFMDGIR 209

Query: 184 AAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQG 243
               P   +        +   A + +++ L ++ ++   +I G+NDS+ LGG++A +  G
Sbjct: 210 TV-IPGATMVHDLDGGGNPDRALEVSSAALAKNADIN--IIYGINDSSSLGGLQAWKAAG 266

Query: 244 FKAADIIGIGINGV-DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302
               +++ +G  G   A     + + +    + +  P+  GY + +       ++  P  
Sbjct: 267 KSQDNLLTVGTGGEGLAFINAIEKEPSYRIEAAM-FPEKEGYTAIDAAVKLFNQEKVPQH 325

Query: 303 FTEVTDVVLITRDNFKEELEKKG 325
               T    +  D++K+     G
Sbjct: 326 IVSPTAP--MNGDDWKKYYSYDG 346


>UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 Tax=Proteobacteria
           RepID=A4TQ38_YERPP
          Length = 313

 Score =  182 bits (461), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 118/319 (36%), Gaps = 19/319 (5%)

Query: 2   HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI 61
           +   K+     L ++   +  A N  +  +    + P+F+ E + A     +LG+  +  
Sbjct: 3   NTLLKSCLTAALISMAGVAGAASNGLIAIITPSHDNPFFKAEAEGAKAKATELGYTTLVA 62

Query: 62  AV-PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120
           +   D  K    I++  A  AK  ++           + KA+   +    +D + +N  G
Sbjct: 63  SHDDDVNKQNQLIETAIARKAKAIILDNAGSDATIGPLKKAKAAGIPAFLID-REINETG 121

Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDT-ARRRTTGSM 179
             +  +        ++G    ++    M  +G        + +   E DT A  R+ G  
Sbjct: 122 IAVSQIVSNNYQGAQLG---AEKFVTLMGGKGKY------IELLGRESDTNAHVRSQGYH 172

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
           D +      + ++    T +     AF+   S+L  +P++    ++  ND+  LG   A 
Sbjct: 173 DVIDEHS--DMKMVAQQTANWSQTEAFNRMESILQANPDITG--VISGNDTMALGAEAAL 228

Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
           +  G    D++ +G +G D V +           ++L         +      ++     
Sbjct: 229 KAAGRN--DVVVVGFDGSDYVRDSIINNG-NIKATVLQPGWAQAQMAVVQADQYLKTGKT 285

Query: 300 PPKFTEVTDVVLITRDNFK 318
             +  ++ D VLI  +N K
Sbjct: 286 GLEEKQLMDCVLIDENNAK 304


>UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Arthrobacter sp. FB24 RepID=A0JVZ4_ARTS2
          Length = 318

 Score =  177 bits (449), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 68/315 (21%), Positives = 121/315 (38%), Gaps = 25/315 (7%)

Query: 8   LAAIGLAAVMSQSAMAEN--LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVP 64
             +IGL    + S  A +  +K+G  V     P+FQ E K A+  GK +G EV+ ++A  
Sbjct: 21  FGSIGLTGCATASGAAGDRPMKIGVTVANSTNPFFQQESKTAESYGKSVGAEVLSQVANE 80

Query: 65  DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124
           D +   N ID    +G K  VI   D       V +A    + VI VD+Q  NA      
Sbjct: 81  DVQTQSNQIDQFITAGVKFIVIDAADTDGVGPAVKRAVSAGIPVIGVDNQSKNATVN--- 137

Query: 125 TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA 184
               +     + GE   + L  ++  +G       +  +    +     R TG    L  
Sbjct: 138 ----ITTDNKQAGEISCRSLADKLGGKGK------IAILNGTPVSAVDDRVTGCKGIL-- 185

Query: 185 AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF 244
             +P+ +I       N    A   A  +L  +P++  +    +ND + +G   A E +G 
Sbjct: 186 GQYPDIKIVADQRGENSRDSALPIATDILTANPDLDGF--FAINDPSAVGVQLAAEQKG- 242

Query: 245 KAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFT 304
             A ++   ++G  + ++   A       +    P     ++ + L   +    EP +  
Sbjct: 243 --ASVVITSVDGASSATDAI-AAGGLITATAAQDPAALMRQAID-LGISIVNGKEPDQKV 298

Query: 305 EVTDVVLITRDNFKE 319
            +    L+   N  +
Sbjct: 299 ILVPTELVDASNVAK 313


>UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Alicyclobacillus acidocaldarius RepID=C8WRM5_ALIAD
          Length = 321

 Score =  162 bits (410), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 59/288 (20%), Positives = 108/288 (37%), Gaps = 21/288 (7%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA-VPDGEKTLNAIDSL 76
           + +A  + +KLGF V     P+F        +  K LG +V  +    D    LN ++ L
Sbjct: 37  TGTASTKPIKLGFAVSTLNNPFFVAMSNGVQEEAKKLGVQVTILNGNNDPATQLNQVEDL 96

Query: 77  AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136
                   ++   D +  S  V +A    + VI +D           +    +   + + 
Sbjct: 97  IQQHVNAIILNPTDSQSLSTAVEQANRAHIPVITLDRSVTKG-----NVACFIASNSVEA 151

Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196
           G+    EL K +  +G  V+   V+            R  G  + +  A  P  ++    
Sbjct: 152 GKMAADELIKALGGKGQVVELQGVI-----GTSAEADREKGFDEEIGKA--PGIRVVARQ 204

Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256
           T + D   A +   ++L  HP ++   +   ND   LG ++A +  G    +I  +GI+G
Sbjct: 205 TANFDRSQALNVMQNILQAHPNIQG--VFAQNDEMALGALKAIQEAGKH--NIKIVGIDG 260

Query: 257 -VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKF 303
             +AV+++ K      Y  +   P   G    E     V  +  P + 
Sbjct: 261 EKEAVNDVHKG---LLYADIAQQPVQEGILGVEYAVKLVEGEKVPKQV 305


>UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n=10 Tax=Clostridium
           RepID=Q0SSJ2_CLOPS
          Length = 301

 Score =  160 bits (404), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 50/303 (16%), Positives = 97/303 (32%), Gaps = 17/303 (5%)

Query: 2   HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIK 60
             F+  L  + L             K+G ++     P+F      A+K  + LG++ V+ 
Sbjct: 6   KIFSVGLMLMMLMTSFIGCGRDNKPKIGMVLSTLNNPFFVNMKDGAEKEAEKLGYDLVVL 65

Query: 61  IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120
            +  D  K    ++ L   G    +I   D       V  A   ++ VI +D Q      
Sbjct: 66  DSQNDPAKERANVEDLIQLGVIALLINPTDSDAVVKTVEVANKSNIPVITLDRQ-----A 120

Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180
                   +     K GE   + +  + +     +    +  I        R R  G  +
Sbjct: 121 NGGKITSHIASDNIKGGEMAAEYVLDKFKDEKGPINVVEIQGI--PGASATRDRGEGFHN 178

Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240
            +      +     +     D         +++  +P ++  ++   ND   LG V+A +
Sbjct: 179 IMDKND--KFNFISIQAADFDRQKGLQVMENIIQANPNIQ--VVFAHNDEMALGAVKAIK 234

Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300
             G    + + IG +G D   +   A        +   PD+ G    E+       +   
Sbjct: 235 ASGI---NALVIGFDGNDDAKDSIDANE--MTAIIAQQPDLIGALGVELANKIYKGESIK 289

Query: 301 PKF 303
            K 
Sbjct: 290 NKI 292


>UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=C5VU40_CLOBO
          Length = 307

 Score =  156 bits (394), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 101/298 (33%), Gaps = 20/298 (6%)

Query: 4   FTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIA 62
               L  +G     ++   A   K+G +V     P+F +  + A+K  K+LG+E ++  +
Sbjct: 12  CASILLVLGFVGCSNKHTQAREKKIGMVVSTLNNPFFVSLKEGAEKKSKELGYELLVLDS 71

Query: 63  VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122
             D  K  + I+ L   G    ++   D       V  A   ++ VI VD Q        
Sbjct: 72  QNDPAKERSNIEDLIQGGISVLIVNPTDSDAVINSVQVANKANIPVITVDRQ-----ANG 126

Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITA-NELDTARRRTTGSMDA 181
            + V  +     K GE     +  E++ +    K+  V+ +         R R  G  + 
Sbjct: 127 GEVVSHIASDNIKGGELASSFIIDELKNK----KDIKVVELQGIPGASATRERGKGFHNI 182

Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241
           +        ++      + D         +++    +     +   ND   LG  +A + 
Sbjct: 183 IDKKS--NLKLISSQAANFDRAQGLSVMENIIQAQSDFD--AVFAHNDEMALGAAKALKT 238

Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
              K   II +G +G +        + +    ++   P + G  S E           
Sbjct: 239 ANKK---IIVVGFDGDEDAKTAI--EKSEISATVAQQPALMGSTSIETAVKISNGQNI 291


>UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional regulator n=5
           Tax=Firmicutes RepID=C7REM6_ANAPD
          Length = 316

 Score =  156 bits (393), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 50/288 (17%), Positives = 101/288 (35%), Gaps = 22/288 (7%)

Query: 17  MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDS 75
            S++    ++K+G  +     P+F +  +  ++A      E VI  A  D     N ++ 
Sbjct: 41  ASETKTDGDMKIGVSLSTLNNPFFVSIREGVEEAAGKENVETVITDAQNDSSTQNNQVED 100

Query: 76  LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135
           L   G    VI   D    +  V KA   ++ VI VD           + V  +     +
Sbjct: 101 LITQGVDLIVINPVDSTAIATSVEKANEANIPVICVDR-----GSDQGELVSFIASNNVE 155

Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195
            G+  G+ + +++ +    ++   +         + R R  G  +A       +  +   
Sbjct: 156 GGKLAGEYILEKVGENAEVIQLEGI-----PGASSTRERGEGFEEATNG----KINLLAS 206

Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255
            T + D         ++L  HP+VK   +   ND   LG   A +  G    D+  +G +
Sbjct: 207 QTANFDRAEGMTVMENLLQAHPDVK--AVFCQNDEMALGASEAIKASG---KDVTIVGFD 261

Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKF 303
           G +    +   +      ++   P   G  + E    ++  +      
Sbjct: 262 GNE--DAIKAVEEGNLSATVAQKPKEMGKLAIETAIKYLKGEEVEETV 307


>UniRef50_B5XZZ5 Sugar ABC transporter, periplasmic sugar-binding protein n=7
           Tax=Enterobacteriaceae RepID=B5XZZ5_KLEP3
          Length = 311

 Score =  153 bits (387), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 56/302 (18%), Positives = 118/302 (39%), Gaps = 22/302 (7%)

Query: 19  QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV-PDGEKTLNAIDSLA 77
            +  AE   +  +V   + P++ +E K A +  + LG++   ++   D +K    ID+  
Sbjct: 19  AAHAAEKGTIMIMVNSLDNPYYASEAKGASEKAQALGYKTTVLSHGEDVKKQNELIDTAI 78

Query: 78  ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPL--VMMAATK 135
               +G ++   D     A + KA+   + V+ ++ +       P+D V L  +     +
Sbjct: 79  GKKVQGIILDNADSTASVAAIEKAKKAGIPVVLINREI------PVDDVALEQITHNNFQ 132

Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195
            G        ++M ++G   + +  +A           R+      +    +P+      
Sbjct: 133 AGSEVANVFVEKMAEKGKYAELTCNLADNN-----CVTRSKSFHQVIDQ--YPDMVSVAK 185

Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255
                 +       +S+L  HP+VK   ++  N    LG + A +       D+I +GI+
Sbjct: 186 QDAKGTLIDGKRIMDSILQAHPDVKG--VICGNGPVALGAIAALKAANRS--DVIVVGID 241

Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315
           G +   +  KA       +++        +    L N++ K  +P K   +   +LIT+D
Sbjct: 242 GSNDERDAVKA--GTLQATVMLQAQAIAAQGVTDLDNYLQKGEKPAKQRVMFRGILITQD 299

Query: 316 NF 317
           N 
Sbjct: 300 NA 301


>UniRef50_C6C3I7 Periplasmic binding protein/LacI transcriptional regulator n=6
           Tax=Proteobacteria RepID=C6C3I7_DICDC
          Length = 311

 Score =  153 bits (386), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 127/322 (39%), Gaps = 22/322 (6%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           M   +  L A   +A+   +  AE   +  LV   + P++ +E K ADK  ++LG++   
Sbjct: 1   MKLRSMLLTAAITSALSLTAHAAEKGTIMILVNSLDNPYYASEAKGADKKAQELGYKTTV 60

Query: 61  IAV-PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
           ++   D +K    ID+      +G V+   D     A + KA+   + V+ ++ +     
Sbjct: 61  LSHGEDVKKQSELIDAAIGKKVQGIVLDNADSTASVAAIKKAKAAGIPVVLINREI---- 116

Query: 120 GKPMDTVPLV--MMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177
             P+D V LV       + G        ++M ++G   + +  +A           R+  
Sbjct: 117 --PVDDVALVQITHNNFQAGSDVANVFVEKMGEKGKYAELTCSLADNN-----CVTRSKS 169

Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237
               L    +P             +       +S+L  HP+VK   ++  N    LG + 
Sbjct: 170 FHQVLDQ--YPGMASIARQDAKGTLIDGKRIMDSILQAHPDVKG--VICGNGPVALGAIA 225

Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
           A +  G    D++ +GI+G +   +  K  +     +++        +    L N++ K 
Sbjct: 226 ALKAAGRN--DVVVVGIDGSNDERDAVKEGS--LKATVMLQAQAIAAQGVTDLDNFIQKG 281

Query: 298 VEPPKFTEVTDVVLITRDNFKE 319
            +P K   +   +LI +DN  +
Sbjct: 282 AKPAKQRVMFRGILIQQDNASK 303


>UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8S312_9CLOT
          Length = 346

 Score =  151 bits (382), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 57/303 (18%), Positives = 107/303 (35%), Gaps = 20/303 (6%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSL 76
           S+    +   +G  +     P+F        KA  + G E+ I  A  D    +  +++L
Sbjct: 58  SEEGSGKKYVIGLAMNTQTNPFFVDVKDGVQKAADEHGIELYITDAQDDPTIQMKDVENL 117

Query: 77  AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136
                   +I T D     + +       + V  +D      +    + +  +   A K 
Sbjct: 118 ITKKPDAIIIDTCDSDAIVSSIEACNEAGIPVFTMDR-----EANGGEVISHIGYDAIKS 172

Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196
           G   GQ L   +  +G  V+   +M         A+ R+ G  + +K    P+ +I    
Sbjct: 173 GRMAGQYLVDTLGGKGKIVEIQGIMGTN-----VAQNRSQGFNEVMK--DNPDMEIVACQ 225

Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256
               D         ++L  +PE+    +   ND  +LG + A E  G    +I+ IG + 
Sbjct: 226 VADFDRAKGMSVMENILQANPEIDG--LYAANDEMLLGALEAMEAAGRT-DEIVKIGCDA 282

Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316
           +D   +  KA       ++   P   G       Y+++      P    + D  L+T+D 
Sbjct: 283 IDDTLDAMKA--GKVDATIAEPPFFLGKAILNTAYDYLEGKQVEP--YVILDNQLVTQDT 338

Query: 317 FKE 319
              
Sbjct: 339 VDS 341


>UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Sebaldella termitidis ATCC 33386 RepID=D1AQW5_SEBTE
          Length = 313

 Score =  151 bits (380), Expect = 4e-35,   Method: Composition-based stats.
 Identities = 53/275 (19%), Positives = 103/275 (37%), Gaps = 19/275 (6%)

Query: 24  ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAK 82
           +   +G  +   + P++ +     +K       ++ + IA  D  K ++ I+        
Sbjct: 37  KTYTIGVSLLTQQHPFYLSLKDAIEKEAAAQNVKLNVSIANQDLNKQISDIEDFITKKVD 96

Query: 83  GFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQ 142
             +I   D K   A V KA   ++ VI VD   +      +D    V       G+  G+
Sbjct: 97  AIIISPVDSKGVLAAVKKAEAANIPVITVDVPAIG-----VDVAAHVATDNYTGGKIAGE 151

Query: 143 ELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDI 202
           E+ + +  +G       V  I    +D+  +R  G  + +  A +P+ +I  +       
Sbjct: 152 EMARLLNGKG------EVAVIEYPTVDSVVQRIEGFKEVI--AKYPDIKIVAIQ-AGITR 202

Query: 203 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSE 262
           P A  AA +M+  +  +    I G  D   L  V A +  G K   I  IG +G+    +
Sbjct: 203 PEALTAAQNMIQANKNLGG--IFGFGDDAALAAVAAVKSAG-KEDQIKVIGFDGMQEARD 259

Query: 263 LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
               + + F   +   P+  G  + +     +  +
Sbjct: 260 AVTKEKS-FAAVITQYPEDMGKIAVDTTLKILKGE 293


>UniRef50_Q1M6L8 Putative substrate-binding component of ABC transporter n=1
           Tax=Rhizobium leguminosarum bv. viciae 3841
           RepID=Q1M6L8_RHIL3
          Length = 340

 Score =  149 bits (375), Expect = 2e-34,   Method: Composition-based stats.
 Identities = 61/318 (19%), Positives = 109/318 (34%), Gaps = 16/318 (5%)

Query: 5   TKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA-V 63
            ++ A    A + + SAMA++L  G++    E P+     K  ++A K+ G + + I   
Sbjct: 25  FRSSALTLTALLFAGSAMAKDLTFGYVPASLEYPYNVMTAKGFEEAAKEKGVKTVVIDPR 84

Query: 64  PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPM 123
              EK  N++D L +           D  +    V K     + ++A+  Q  ++  + +
Sbjct: 85  GSVEKQGNSLDDLLSQKVDAIGFLPLDSVVAEGFVDKVSDAKVPIVAIALQVGDSAKRQL 144

Query: 124 DT-----VPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
                    LV     + G   G+     + K          + +        +  T G 
Sbjct: 145 KDPYPGLSALVATDNYQSGVVAGEMAAGVLPKDKTAKIG---IVMGDPAYTIVKLDTDGF 201

Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238
             AL  AG  +  I      +           + L  HP++   LI    D   +G  RA
Sbjct: 202 KAALDKAG-AKYTIVAEQPTNWTPDEGEAVCQNFLTAHPDID--LIYSHADDMAIGCARA 258

Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
            +    K   +I  G         +   +    YGS+   P + G    + LY    K  
Sbjct: 259 IDASASK-PKLIATGGGSKLGHDAILAGE---MYGSVCTRPQLLGKLMFDALYEAATKPE 314

Query: 299 EPPKFTEVTDVVLITRDN 316
            P       D+  IT++ 
Sbjct: 315 TPKGRFVTYDMPPITKET 332


>UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD
          Length = 304

 Score =  148 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 57/305 (18%), Positives = 106/305 (34%), Gaps = 30/305 (9%)

Query: 3   KFTKALAAIGLAAVMSQS--------AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL 54
               ALA + L+A   +             ++K+G  V   + P+F +      K  K  
Sbjct: 6   TVFTALALLFLSACSLEPPEWAKPNKEKGTDIKIGLSVSTLKNPFFVSLKNGVVKEAKKQ 65

Query: 55  GFEVIKI-AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD 113
           G EVI + A  D  K  N ++ L   G    +I   D    S  V  A    + V+ +D 
Sbjct: 66  GIEVIVVDAQDDSAKQTNDVEDLLQQGVDALLINPADSSAISTAVQSANSLGIPVVTLDR 125

Query: 114 QFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 173
              N K +      LV     K G+     + +++ K     +   V           R 
Sbjct: 126 SAENGKVE-----TLVASDNVKGGQMAADFIVEQLGKGAKVAELEGV-----PGASATRE 175

Query: 174 RTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVL 233
           R +G           +  +    T   D     +   ++L  +P+++   +   ND   L
Sbjct: 176 RGSGFHKTADD----KLNVIAKQTADFDRTKGLNVMENLLQGNPDIQ--AVFAHNDEMAL 229

Query: 234 GGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNW 293
           G + A    G    +I+ +G +G +    +   QA     ++   P++ G  + +   + 
Sbjct: 230 GAIEAIRSSG---KEILVVGFDGNE--DAVKAVQAGDMSATIAQQPELIGKLAVQAARDI 284

Query: 294 VAKDV 298
           +    
Sbjct: 285 LNGKK 289


>UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic component n=13
           Tax=Bacteria RepID=Q7MEU9_VIBVY
          Length = 292

 Score =  148 bits (372), Expect = 4e-34,   Method: Composition-based stats.
 Identities = 58/298 (19%), Positives = 116/298 (38%), Gaps = 22/298 (7%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           M K    ++A  L + +S  A A++  +  +V     P+F T    A+   K+LG+ +I 
Sbjct: 1   MKKLATLISAALLTSTVSLGAQAQD-TMAIVVSTLNNPFFVTMKDGAETRAKELGYNLIV 59

Query: 61  -IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
             +  D  K L+ ++ L   G K  +I   D    S  +  A    + V+ +D       
Sbjct: 60  LDSQNDPSKELSNVEDLTIRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDR-----G 114

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
               D V  +       GE  G  + +++ ++   ++   +          AR R  G M
Sbjct: 115 ASRGDVVSHIASDNVVGGEMAGNFIVEKVGEKAKVIQLEGIA-----GTSAARERGEGFM 169

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
           +A+K +     ++        D     +   ++L  +P+V+   +   ND   LG +RA 
Sbjct: 170 NAVKGSH---MELLASQPADFDRTKGLNVMENLLAANPDVQ--AVFAQNDEMALGALRAI 224

Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
           +  G    +++ +G +G D    ++         ++   PD+ G    E     +  +
Sbjct: 225 QASG---KEVMIVGFDGTD--DGIAAVNRGKLAATIAQQPDLIGALGIETADKVLKGE 277


>UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepID=RBSB_BACSU
          Length = 305

 Score =  147 bits (370), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 54/282 (19%), Positives = 96/282 (34%), Gaps = 22/282 (7%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSL 76
           S S   +   +G  V     P+F +  K  +K  K  G +VI   A  D  K  + ++ L
Sbjct: 30  SNSGNKKEFTIGLSVSTLNNPFFVSLKKGIEKEAKKRGMKVIIVDAQNDSSKQTSDVEDL 89

Query: 77  AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136
              G    +I   D    S  V  A    + V+ +D        +      LV     K 
Sbjct: 90  IQQGVDALLINPTDSSAISTAVESANAVGVPVVTIDR-----SAEQGKVETLVASDNVKG 144

Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196
           GE     +  ++ K     +   V           R R +G  +        + Q+    
Sbjct: 145 GEMAAAFIADKLGKGAKVAELEGV-----PGASATRERGSGFHNIADQ----KLQVVTKQ 195

Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256
           +   D         ++L  HP+++   +   ND   LG + A    G    DI+ IG +G
Sbjct: 196 SADFDRTKGLTVMENLLQGHPDIQ--AVFAHNDEMALGALEAINSSG---KDILVIGFDG 250

Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
                 L+  +      ++   P++ G  ++E   + +    
Sbjct: 251 NK--DALASIKDRKLSATVAQQPELIGKLATEAADDILHGKK 290


>UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium botulinum
           RepID=B1KZY7_CLOBM
          Length = 336

 Score =  146 bits (369), Expect = 7e-34,   Method: Composition-based stats.
 Identities = 60/343 (17%), Positives = 121/343 (35%), Gaps = 38/343 (11%)

Query: 1   MHKFTKALAAIGLAAVMSQSAM-----------------AENLKLGFLVKQPEEPWFQTE 43
           M K TK + A+ L+ ++  SA+                  + + +G  +      +F   
Sbjct: 1   MKK-TKKILAVLLSTLLIGSAILTGCGSKESSVDKKDKDPKEVTVGLSLSSLSNAFFIGM 59

Query: 44  WKFADKAGKDLGFEVIKIAVP-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKAR 102
            K       ++G ++I+     D  K L+ I+ L        ++   D       V KA+
Sbjct: 60  EKGVKDKTSEIGCKLIETNANGDIAKQLSDIEDLITKKVDILIVNALDADAIVPAVKKAK 119

Query: 103 GYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMA 162
             ++ +I +D           D    +     K+GE+  + + K ++ +G +   + V  
Sbjct: 120 EANIPIIFLDR-----GANSEDMTTFLETDNVKMGEQAAELILKALKDKGLNG-GNVVEI 173

Query: 163 ITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHW 222
                   AR R  G  + +      E +I        +   + +   ++L  +P++   
Sbjct: 174 EGLQGTSAARDRGKGFHNVMDK--HKEVKIVAKQAGDFNQEKSMNVMQNILQANPKID-- 229

Query: 223 LIVGMNDSTVLGGVRATEGQGF-----KAADIIGIGINGVDAVSELSKAQATGFYGSLLP 277
            + G ND   +G  +A               I  +GI+G++   E  K        S+  
Sbjct: 230 AVFGHNDDCTVGAEKAIIASNRMKPAGDKEHIFVVGIDGINQAIESVKK--GNIDVSISQ 287

Query: 278 SPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320
            P   G ++ E+    +  +         T    IT+DN  +E
Sbjct: 288 DPIGMGVQAVEVGLKAIKGEQVEKHIY--TKFFPITKDNATDE 328


>UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chthoniobacter flavus
           Ellin428 RepID=B4DBL5_9BACT
          Length = 328

 Score =  145 bits (365), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 52/310 (16%), Positives = 104/310 (33%), Gaps = 17/310 (5%)

Query: 4   FTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV 63
             K+  A         +  A    +G  +   + P+F+         GK  G++ + ++ 
Sbjct: 19  CNKSENASTSTDTQPPTGSASKGTIGVSLLTLDNPFFKVIGDNIVSEGKKRGYDAVVVSG 78

Query: 64  P-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122
             D  K  N I           V+   D K    ++ +A    + V  VD    +  G  
Sbjct: 79  DKDVAKQSNQIKDFIVKKVSAIVLSPCDSKSIVPVIQEANAAGIPVFTVDIP-CHEPGVK 137

Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182
           + T   +       G+   + + + + + G       +  +   + ++ + R  G  + +
Sbjct: 138 IAT--QIATDNYGGGKEAAKAMIEALGEAGGK-----IAILHFKQAESCQLRVKGFREII 190

Query: 183 K---AAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
               A G  +  I             + AA   L  +P++    I  +ND   LG   A 
Sbjct: 191 DAHNAEGKSKVDIVAELESGGAKDQGYKAAEDTLQANPDLHG--IFAINDPAALGARAAL 248

Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
           E  G K   ++ +G +G     +  K      Y   +  PD  G +  + +      +  
Sbjct: 249 EKAG-KTDQVVIVGFDGQPEGKQAIKE--GKIYADPIQFPDKMGAQIVDAIIQQSKGETL 305

Query: 300 PPKFTEVTDV 309
           PP+    T +
Sbjct: 306 PPQMLIPTSL 315


>UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkholderia graminis
           C4D1M RepID=B1G1G9_9BURK
          Length = 369

 Score =  144 bits (364), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 63/310 (20%), Positives = 120/310 (38%), Gaps = 15/310 (4%)

Query: 19  QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP-DGEKTLNAIDSLA 77
            +A     K+GF V      +F       +K  K+ GF++++     D ++ +N   +L 
Sbjct: 61  ANAAGGKTKIGFSVSTLNNAFFVGLKAGVEKGAKEQGFDLVQTNANGDAQQQVNDAINLL 120

Query: 78  ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137
           + G    V+   D K     V KA   ++ V  +D      K         V      +G
Sbjct: 121 SQGVTALVLNPIDSKAIIPAVEKANAMNIPVFTLDRGSDGGK-----VTSFVASDNVALG 175

Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT 197
           +   + +  ++ KR    K + V  I       A  R  G  D +  A +P+ ++     
Sbjct: 176 QTAAKWIADQLTKRYGSAKGNVVDLIGLVGTTAATDREKGFSDEI--AKYPDIKVVARQE 233

Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF--KAADIIGIGIN 255
            + D   + +A  ++L ++P++    + G ND   +G  +A +  G      D   I + 
Sbjct: 234 GAFDQEKSLNAMTNILQKYPQID--AVFGANDDNTVGAEKAIDNAGRYKPLDDKQHILVI 291

Query: 256 GVDAVSELSKAQATGFY-GSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314
           G D  ++   A   G    ++  +P     KS + + ++ AK   P  +      +LI +
Sbjct: 292 GADGTAQALSAIRAGKQDATISQNPIQMAAKSLQFVADYTAKKDVPANY--AWPTLLIDK 349

Query: 315 DNFKEELEKK 324
            N   +  KK
Sbjct: 350 SNIDSDATKK 359


>UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis
           DSM 17241 RepID=B0P8T4_9FIRM
          Length = 333

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 48/296 (16%), Positives = 101/296 (34%), Gaps = 20/296 (6%)

Query: 23  AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLAASGA 81
            E + +GF        ++    K   +     G ++I +    D       ++     G 
Sbjct: 57  REQIVVGFSNWSRSFEFYVDLEKGMQEVADAQGVKLITQDPNGDLAAQTKQVEDFITQGV 116

Query: 82  KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141
            G V+C  D               + ++  D                +    T  G+   
Sbjct: 117 DGIVLCPIDSNAAVTEAETINQAGIPLVTTDIAVAGGD-----VASHIASDNTLGGQLAA 171

Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201
           Q + +++   G       V  I    + +   R TG  D + A  +P+ +I  V +  + 
Sbjct: 172 QFIGEQLGGTGK------VALINNPTITSLIERETGFTDTM-AQKYPDIEIVAVQSGESK 224

Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261
                    ++L  +P+V+   +  +ND   LG ++A +    +  DI+ +G +  +   
Sbjct: 225 REKGLSVMENILQSNPDVQG--VFAVNDMMGLGALQAVQAA--QRDDIVIVGFDATEEAV 280

Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317
           +  K + +    S+  +P   G  + E +   +A +           V L+T  N 
Sbjct: 281 KYIK-EGSALKASVAQNPVELGKTTMETMLKVIAGEQVEKNIP--VPVELVTAGNA 333


>UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Proteobacteria
           RepID=A6WVL9_OCHA4
          Length = 300

 Score =  144 bits (363), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 60/302 (19%), Positives = 109/302 (36%), Gaps = 21/302 (6%)

Query: 2   HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IK 60
              ++ L +    A+M+ +A AE   +G  +   + P++        K  +     + + 
Sbjct: 4   KSLSRILFSGVALAMMAGAASAEG--IGASLLTQQHPFYIALADAMKKEAQAENVPLEVS 61

Query: 61  IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120
           IA  D  K L  ++     G    +I   D K   + + KA    +KVI VD        
Sbjct: 62  IANQDLSKQLADVEDFITKGVDVIIISPVDSKGVRSAINKAEKAGIKVITVD-----VPA 116

Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180
             +D    V       GE+  + + K + ++G       V  I    + +   R  G   
Sbjct: 117 NNVDVTSFVGTDNFAGGEKAAELMAKTIGEKGN------VAVIDYPTVQSVVDRIEGFKK 170

Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240
            +  A +P+ +I  +       P A  AA ++L  +P++    I G  D   L    A +
Sbjct: 171 GI--AKYPDIKIVAIQPG-ITRPEALSAAQNILQANPDIVG--IFGFGDDAALAAASAVK 225

Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300
               +   +  IG +G++      K       G +   PD  G  + E     +  +  P
Sbjct: 226 SAKLE-NQVKVIGFDGMEEARNAVKNDPV-MVGVIAQYPDQMGKVAVETAAKVIKGEEVP 283

Query: 301 PK 302
            K
Sbjct: 284 AK 285


>UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-binding protein n=31
           Tax=Vibrio RepID=A5F1B8_VIBC3
          Length = 294

 Score =  143 bits (361), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 58/299 (19%), Positives = 115/299 (38%), Gaps = 22/299 (7%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           M K T  ++A  L+  +S  A A++  +  ++     P+F T    A+   K+LG+ +I 
Sbjct: 3   MKKLTTLISAALLSTSVSFVAQAQD-TVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIV 61

Query: 61  -IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
             +  D  K L+ ++ L   G K  +I   D    S  +  A    + V+ +D       
Sbjct: 62  LDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDR-----G 116

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
               + V  +       GE  G  +  ++      ++   +          AR R  G M
Sbjct: 117 ASRGEVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIA-----GTSAARERGEGFM 171

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
           +A+K +   + Q+        D     +   ++L  +P+V+   +   ND   LG +RA 
Sbjct: 172 NAVKGS---KMQLLASQPADFDRTKGLNVMENLLAANPDVQ--AVFAQNDEMALGALRAI 226

Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
           +  G     ++ +G +G D    ++  +      ++   PD+ G    E     +  + 
Sbjct: 227 QASGKS---VMIVGFDGTD--DGIAAVERGQLAATVAQQPDMIGAIGIETADKMLKGEK 280


>UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional regulator n=54
           Tax=Bacteria RepID=Q3MB45_ANAVT
          Length = 343

 Score =  140 bits (353), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 55/298 (18%), Positives = 110/298 (36%), Gaps = 24/298 (8%)

Query: 28  LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP----DGEKTLNAIDSLAASGAKG 83
           +G  +     P+F    + A+K  K +G E +++ V     D  +  N I++  A+    
Sbjct: 62  VGVTLGDLSNPFFVVMAQGAEKEAKKIGGEDVRVTVVSSGYDLNQQFNQIENFVAANTDL 121

Query: 84  FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143
            +I   D K     V +AR     VIAVD           D    V     + GE   Q 
Sbjct: 122 IIINAADSKGIRPAVDQARQAGKVVIAVDTAI------EADIDATVTTNNVQAGEISCQY 175

Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ-VPTKSNDI 202
           +   ++ +G       V+ +    + +  +R  G +  L  A +P+ ++           
Sbjct: 176 IADRLKGKGN------VVIVNGPPVTSVIQRVDGCLKVL--AKYPDIKLLSKDQNAEGSR 227

Query: 203 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSE 262
            G     + +LV  P++    +  +ND + +G   A      K  D   +G++G     E
Sbjct: 228 DGGLRVMSDLLVTFPKID--AVFAINDPSGVGVDLAANQA--KRQDFFIVGVDGAPEAIE 283

Query: 263 LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320
              +  + +  +   +P      + ++  + +    +P     +    LIT++N    
Sbjct: 284 AIASGDSLYAATATQNPRGMTQTAIQVGNDILHGK-KPESPNILIPAKLITKENVSTS 340


>UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Thermoanaerobacter
           tengcongensis RepID=Q8RBP9_THETN
          Length = 339

 Score =  140 bits (353), Expect = 6e-32,   Method: Composition-based stats.
 Identities = 58/308 (18%), Positives = 111/308 (36%), Gaps = 22/308 (7%)

Query: 20  SAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP----DGEKTLNAIDS 75
           ++  +   +  +     +  +      A+   K+LG   +    P    D  + +  ++ 
Sbjct: 43  ASSEKKYNIVLITMDSMDEHWLAVKAGAEAKAKELGNVQLTFRAPAEKADPNEQVRMMED 102

Query: 76  LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135
                A   +I   D    + +V KA    + VI +D      K      V  V     K
Sbjct: 103 AINQKADAILIAPTDQTALTPVVEKAFDAGIPVILIDSPVKTDK-----YVSFVATDNIK 157

Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195
             E    +L + +  +G        +        T   R  G  D LK   +P+ QI   
Sbjct: 158 AAEMAADKLGELLGGKGKIA-----IISAQPGSGTTIMRENGFKDRLKE-KYPDIQIITT 211

Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255
                D   A + A  +L  HP++  +   G N+ + +G   A + +   A  +  +G +
Sbjct: 212 QYSMGDKNRALNQALDILTAHPDLAGF--YGTNEGSTIGIAMAIKQKDL-AGKVKVVGFD 268

Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315
              A     K        S++ +P + GYK  E+  + +     P +    T V ++T+D
Sbjct: 269 ISQATINAIKEN--YIQASMVQNPYMMGYKGVEIAVDKLQGKEVPKRVD--TGVTVMTKD 324

Query: 316 NFKEELEK 323
           N  E +++
Sbjct: 325 NVDEVVKE 332


>UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional regulator n=49
           Tax=Proteobacteria RepID=Q1R0N3_CHRSD
          Length = 318

 Score =  140 bits (352), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 60/318 (18%), Positives = 116/318 (36%), Gaps = 18/318 (5%)

Query: 2   HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IK 60
            +   A  A+G+  + S ++  +   +  +V     P++ TE K A++  + LG+E  + 
Sbjct: 6   KRLLIAALAVGVPLLASGASAQDKGLMSIIVNDTSNPYWFTEGKIAEETAEKLGYEADVS 65

Query: 61  IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120
               D       ID+   + A+  ++   +       V KA    + V  + +  +N +G
Sbjct: 66  SHKGDTNTESRQIDTAITNQAEAIILDPANADGSIGAVRKAVEAGIPVFII-NAEINQQG 124

Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180
                +         +G +Q          +        V    A   + A  R+ G   
Sbjct: 125 LAEAQLVSNNAQGAALGAQQWI--------KSVGDSARYVELKGAPSDNNAATRSNGYET 176

Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240
            L  + +P  +       + D    F+   SML  +P++    ++  ND   LG + A +
Sbjct: 177 VL--SQYPGLEKVGSDVANWDRTQGFNKTQSMLQANPDIDG--VISGNDEMALGAISALK 232

Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWV-AKDVE 299
             G K  D++  G +G     E  KA       ++L    +    +  M   +V   +  
Sbjct: 233 EAG-KLDDVVVGGFDGSPDAVEAVKA--GEMDYTVLQPVAIFSEMAVRMADKYVTTGETG 289

Query: 300 PPKFTEVTDVVLITRDNF 317
                ++ D  LIT DN 
Sbjct: 290 VDGEKQLFDCFLITSDNV 307


>UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gammaproteobacteria
           RepID=A8GZV8_SHEPA
          Length = 299

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 115/298 (38%), Gaps = 22/298 (7%)

Query: 2   HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-K 60
           HK +  L+A  L+   S SA A++  +  ++     P+F T    A+    +LG+++I  
Sbjct: 7   HKVSVLLSAALLSVSTSFSASAQD-AIAIVLSTMNNPFFVTMKDGAEAKAAELGYKLIAL 65

Query: 61  IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120
            +  D  K L  ++ L   G K  +I   D    +  +  A   ++ V+ +D        
Sbjct: 66  DSQNDPSKELANVEDLTMRGVKAILINPTDALAVTNAIRTANRANIPVLTLDR-----TA 120

Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180
              D V  +       GE  G+ + +++ K    ++   +          AR R  G  +
Sbjct: 121 AHGDIVSHIASDNIAGGELAGEFIAQQLGKNAKVIQLEGIA-----GTSAARERGEGFSN 175

Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240
           A+ A  F   ++        D     +   +ML  + +V+   +   ND   LG +RA E
Sbjct: 176 AVTANNF---ELLSSQPADFDRSKGLNVMENMLAANGDVQ--AVFAQNDEMALGALRAIE 230

Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
             G    DI+ IG +G D      + Q      ++   P++ G  +       +   V
Sbjct: 231 AAG---KDILVIGFDGTDEGIAAVRRQQ--LSATVAQQPELLGATAIMTADRILKGQV 283


>UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH
          Length = 309

 Score =  140 bits (352), Expect = 8e-32,   Method: Composition-based stats.
 Identities = 51/270 (18%), Positives = 93/270 (34%), Gaps = 19/270 (7%)

Query: 28  LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI-AVPDGEKTLNAIDSLAASGAKGFVI 86
           +G  V     P+F T  K A++  +  G  +I + A  D  K + +I+ L     K  ++
Sbjct: 42  IGLAVSTQSNPFFVTLKKGAEEEAQKQGLTLITVDAQDDPAKQIASIEDLIQKKVKVILV 101

Query: 87  CTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYK 146
              D       V  A    + V+ +D      +         V       G+   + L +
Sbjct: 102 NPTDSDAVVGAVKAANAAGIPVVTLDRSVNGGE-----VASHVASDNVAGGKMAAEYLLE 156

Query: 147 EMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAF 206
           ++  +G  V+   +          AR R  G  D +  A   + ++        D     
Sbjct: 157 KIGNQGDVVELEGI-----PGASAARERGQGFHDVIDQA--KDVKVVGRQPADFDRAKGL 209

Query: 207 DAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKA 266
               ++L  +  VK   +   ND   LG V+A E  G K  D+  +G +  D      KA
Sbjct: 210 SVMENILQANKNVKG--VFAHNDEMALGAVQALEAAGMK--DVTVVGFDATDDAVNAVKA 265

Query: 267 QATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296
                  ++   P + G  + +     +  
Sbjct: 266 --GKMSATVAQKPKLIGKTAVDAAKKIIDG 293


>UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Pasteurellaceae
           RepID=B0URJ4_HAES2
          Length = 311

 Score =  139 bits (351), Expect = 9e-32,   Method: Composition-based stats.
 Identities = 61/327 (18%), Positives = 124/327 (37%), Gaps = 21/327 (6%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPW---FQTEWKFADKAGKDLGFE 57
           M K   A+   GL  + SQ+ +A+N  +G  +    + W    Q   +  D+   D+  +
Sbjct: 1   MKKTLLAMLCGGLL-LTSQAVIAKNYVIGAPMNSFADKWQTYLQDAVRDFDEKHDDVQIK 59

Query: 58  VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117
            +  +  D    +N + +         ++   DP +   I   A+   + +I V+ +  +
Sbjct: 60  -LADSNSDPNIQVNLVQNFIDQNVDALLVVPTDPTVVKRIGVLAKKAGIPLIVVNRKPND 118

Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177
              + + +   V     + G  QG  +   +  +  +    +++ +     D   +RT G
Sbjct: 119 EHMQYVTS--FVGSDEIEGGRIQGNFIVNTLAGKNAE----SLILLGPLGQDAVTKRTQG 172

Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237
           + +    A     ++        +       A ++L  +  +   +IV  ND   +G + 
Sbjct: 173 NEEIF--AQHKNIKVVSKQEGRWERDRGLAIAENVLAGNKGIN--VIVSNNDEMAIGAIL 228

Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
           AT   G K  DI  +G+   DA  +  +    G   ++  S    GY  +EM Y     +
Sbjct: 229 ATRKLGIKDEDITIVGL---DATPDALEYLGKGLDATVFQSAQGQGYTGAEMAYLAAKGE 285

Query: 298 VEPPKFTEVTDVVLITRDNFKEELEKK 324
             P    +     L+T D  KEE + +
Sbjct: 286 KVPS--VKWVPFELVTPDK-KEEYQAR 309


>UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S41_MANSM
          Length = 313

 Score =  138 bits (346), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 46/291 (15%), Positives = 108/291 (37%), Gaps = 16/291 (5%)

Query: 10  AIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---PDG 66
           +  ++A+ + +  A+  ++  L+K     +F +  + A++  K+   ++I          
Sbjct: 13  SALISALPALAFAADKPQIALLMKTLSNEYFISMRQGAEETAKEKNIDLIVQVAEKEDST 72

Query: 67  EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD-T 125
           E+ +  ++++ A      ++   D         KA    + +I +D +      +     
Sbjct: 73  EQLVGLVENMIAKKVDAIIVTPNDSIAFIPAFQKAEKAGIPIIDLDVRLDAKAAEAAGLK 132

Query: 126 VPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAA 185
              V +     G  + + L + + K+G       +       +D   +R  G++ A   A
Sbjct: 133 FNYVGVDNFNGGYLEAKNLAEAIGKKGNVAILEGI-----PGVDNGEQRKGGALKAF--A 185

Query: 186 GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK 245
            +P+ +I    + + +   A     ++L  +P +    I   ND+  +G V A E  G  
Sbjct: 186 EYPDIKIVASQSANWETEQALTVTTNILTANPNING--IFAANDNMAIGAVTAVENAGL- 242

Query: 246 AADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296
           A  ++  G +G+    E  K        ++   P      + E     + K
Sbjct: 243 AGKVLVSGYDGIPLAIEYVKQ--GKMQNTIDQLPKKQVAIAIEHALKQINK 291


>UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Lutiella nitroferrum 2002 RepID=B9Z758_9NEIS
          Length = 313

 Score =  137 bits (344), Expect = 5e-31,   Method: Composition-based stats.
 Identities = 57/318 (17%), Positives = 111/318 (34%), Gaps = 25/318 (7%)

Query: 8   LAAIGLAAVMSQSAMAENLK-LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI----A 62
           L A  LA + + S  A  LK +G  V     P+F    K A+ A K +G   +K+    +
Sbjct: 8   LTAAVLAGLAAPSFAARPLKSVGVAVGDLANPFFVAIGKGAEDAAKKIGGPGVKVTTVSS 67

Query: 63  VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122
             D    +  I++  A+     ++   DP     ++ KAR   +         V      
Sbjct: 68  KYDLNTQVGQIENFIANKVDVILVNASDPMGIEPVLKKARAAGI-------AVVAVDVGA 120

Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182
           +     VM      G    + + +++  RG       V+ +    +     R  G    L
Sbjct: 121 VGADATVMSDNAMAGAESCKFMAQQLGGRGN------VVIVNGPPVTAVSARVAGCKKVL 174

Query: 183 KAAGFPEKQIYQV-PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241
               +P  ++            G  +   ++L  H ++    +  +ND T +G   A + 
Sbjct: 175 --GNYPGIKLLSDNQDAHGSRDGGMETMANLLTAHKKID--AVFAINDPTGIGAELAVKQ 230

Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301
            G     +I   ++G     +  K + + F  S   +P      + ++ Y+ +     P 
Sbjct: 231 AGRSDVKLIA-AVDGAPDAEKALKDKKSLFAVSAAQNPYTMATMAVQIGYDILNGKR-PA 288

Query: 302 KFTEVTDVVLITRDNFKE 319
           K   +     +T+ N   
Sbjct: 289 KSQVLLPTPAVTKANVAS 306


>UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKU7_MOOTA
          Length = 326

 Score =  136 bits (341), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 109/299 (36%), Gaps = 24/299 (8%)

Query: 22  MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDSLAASG 80
            +    +G  +   E  ++    K   +  +   F+ +I  A  D  K L  +       
Sbjct: 50  KSGEKVIGVSLLTREHVFYNLIEKAIQEKAQGYKFKPIIMDASQDSNKQLAQVQDFITQK 109

Query: 81  AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140
               V+        +  V  A+   + V  +D   + A+G   D    V       G+  
Sbjct: 110 VDAIVLAPTASAGIAPAVDLAKKAGIPVFTID---IKAEG---DVKSHVATDNYAGGKLA 163

Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSN 200
            +   +++           V  IT +E+ +   R  G  DAL  A +P  ++  V   S 
Sbjct: 164 AKYAAEKVLNGKGK-----VAIITYSEVQSCVDREKGFKDAL--AEYPNIKVVDVENCSG 216

Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV-DA 259
               A +    +L++ P++   LI  + D   +G V   +  G    ++  IG +G  +A
Sbjct: 217 SAEKAANLTQDILLKFPDLD--LIFAVGDPFAVGAVSTIKAAGR---NVKVIGFDGNPEA 271

Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318
           + E+       +   ++  PD  G K  +++ ++      PP+   +    ++   N K
Sbjct: 272 IQEIKNH--GLWVADVVQHPDQIGGKVIDLIADYFNGKSVPPQV--LIPPTIVDASNAK 326


>UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clostridium botulinum
           C str. Eklund RepID=B1B7W7_CLOBO
          Length = 325

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 66/304 (21%), Positives = 118/304 (38%), Gaps = 22/304 (7%)

Query: 27  KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI---AVPDGEKTLNAIDSLAASGAKG 83
            +  ++K     +++T    A+ A K+LG +V  +   A  D     + I+     G   
Sbjct: 40  NVAVVLKALNSDYWKTVQAGANDAAKELGVKVQVLGPNAETDVVGQTSLIEDQIVKGVDA 99

Query: 84  FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143
            V+    P        KA    + V+ +D      K K       V       G+  G+ 
Sbjct: 100 LVVAPLQPNAAITTFDKAEKEKIPVVLIDTDANWDKKKS-----FVGTGNIAAGKLGGEY 154

Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203
           + K+++K      + A++        T   RT G+  AL+AAG    ++ ++   +++  
Sbjct: 155 ISKKLKK-----GDEAIIIRGVPGDRTQDERTQGAQKALEAAG---IKVVEIQPANSERE 206

Query: 204 GAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSEL 263
            A     ++L  HP +K   +   ND   LG V+A +  G K  +II IG++G      L
Sbjct: 207 KAISVMENLLQTHPNIKG--VFCTNDEMALGAVKALQQAGKK--NIISIGVDGS--PDAL 260

Query: 264 SKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEK 323
              +  G  G++  +    G K  E     +  +    +    T +V     N +E    
Sbjct: 261 KSIKEGGLTGTVAQNSYDIGKKGVETAVKVLRGEKVETRIDTGTTLVDKQNVNEQEAKLN 320

Query: 324 KGLG 327
           K LG
Sbjct: 321 KILG 324


>UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8_STIAU
          Length = 331

 Score =  135 bits (340), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 56/313 (17%), Positives = 115/313 (36%), Gaps = 20/313 (6%)

Query: 8   LAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---P 64
           +A++         A     K+  ++K    P+F    K A +A K+LG +++        
Sbjct: 31  VASVSSRTQREPDAAPNARKIALVMKTLTNPFFIEMEKGARRAQKELGIDLLVKTAAQET 90

Query: 65  DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA--KGKP 122
             E+ +  I+ L        VI   D      ++  A+   +++I +D++      KG+ 
Sbjct: 91  SIEQQIQIIEDLIRMKFDAIVIAPGDSLRLVPVLKAAQEAGIRIINIDNRLDAEAMKGQG 150

Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182
           M  VP + +   K        + +E+ K         +        D +R+R  G+  A 
Sbjct: 151 MAPVPFISVDNEKAAYESAGFIAREIHKPAQAAILEGI-----RSADNSRQRRVGAERAF 205

Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242
           +    P  ++    + +  I    D    +   HP++   L+   ND   LG ++  +  
Sbjct: 206 REN--PLIRLVARESANWKIDEGRDVTRRLFSDHPDIT--LLFCANDMMALGAIQFLQES 261

Query: 243 GFKAADIIGIGINGVDAVSELSKAQATGFY-GSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301
           G       G+ +   DA+ E  +A  +G    ++       GY+   +    +  +  P 
Sbjct: 262 GR-----YGVKVAAYDALEEAKRAILSGRMEVTVNQQAAEQGYQGIILASRVLNGEAVPE 316

Query: 302 KFTEVTDVVLITR 314
                T +V +  
Sbjct: 317 VVLVETSLVTLES 329


>UniRef50_A5FXE6 Periplasmic binding protein/LacI transcriptional regulator n=9
           Tax=Proteobacteria RepID=A5FXE6_ACICJ
          Length = 328

 Score =  135 bits (339), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 98/292 (33%), Gaps = 18/292 (6%)

Query: 27  KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGE-KTLNAIDSLAASGAKGFV 85
            +   V     P+F  E KFA +    LG+  +  +        LN I +  A      +
Sbjct: 42  TIAIFVPSLSNPFFVAEEKFAAEEATKLGYGTMVASHNGNAYTQLNLIKTAIARHVAAII 101

Query: 86  ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145
           +         + V  A    + V  +D + +NAKG     +        +  + +G E  
Sbjct: 102 LDNAGADSSISAVKLATKAGVPVFLID-REINAKGIAKAQIV---SNNFQGAQLEGTEFA 157

Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205
           K M  +G  V+ + +          A+ R+ G    LK   F   ++  V T        
Sbjct: 158 KLMGYKGTYVELTGL-----PSDTNAKVRSQGVASVLK--HFSGMKMVAVQTADWSQSKG 210

Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSK 265
           F    ++L  HP +K   ++  ND+  +G   A         ++I  G +G   V    +
Sbjct: 211 FQVTQTLLEAHPHIKG--LIADNDTMAMGAEAALLAA--HKPNVIVTGFDGSPDVINSIR 266

Query: 266 AQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317
                    +L        ++      ++          +  +  LIT+ N 
Sbjct: 267 K--GQIKADVLQPIATFSREAVIEADKYIRTGKTGKPEKQELNCTLITKANV 316


>UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8S343_9CLOT
          Length = 373

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 46/312 (14%), Positives = 104/312 (33%), Gaps = 26/312 (8%)

Query: 14  AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTL 70
           A + +      + K+G++ K    P+   +    + AGK +GF  I  A       E+ +
Sbjct: 68  AQIATSVKAGGDYKIGYIAKNTTNPYMVAQSAGVEAAGKAMGFTAITQAPTTADSVEEQV 127

Query: 71  NAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVM 130
             ++++        ++   D       V KA+   + V+ +            DT     
Sbjct: 128 QLMENMITQDVDAIIVHCADSNGIMTGVRKAQDAGVLVLTI------GTPAAEDTFLRTG 181

Query: 131 MAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEK 190
           +   + G    + +  ++  +G       ++         A  R  G    L  + +   
Sbjct: 182 VDYYESGYTMAKAVADKLGGKGK-----FIILEGPAGASNAIERLNGINTGL--SEYEGI 234

Query: 191 QIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADII 250
           +I    T +           +++ Q+ ++    ++  ND + LG V+A         D++
Sbjct: 235 EIVASQTANFKRTEGMSVTENLIQQYTDID--AVIACNDESALGAVQALTAANMS--DVL 290

Query: 251 GIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP----KFTEV 306
             G +G    +   K      + +    P   G+ +      ++    EP      F   
Sbjct: 291 VCGFDGSVDATNAVKE--GTMFATYNTDPYGSGFVACAYAVKYLNDKTEPEGKFIPFPTA 348

Query: 307 TDVVLITRDNFK 318
            +  L+  D  +
Sbjct: 349 ANDPLVIADTVQ 360


>UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional regulator n=37
           Tax=Gammaproteobacteria RepID=C6CIQ9_DICZE
          Length = 312

 Score =  134 bits (338), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 73/331 (22%), Positives = 127/331 (38%), Gaps = 21/331 (6%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-I 59
           M K T  LAA     + S  A A+N ++ F       P+     + A KA K+LG  + +
Sbjct: 1   MKKIT-ILAAAMAFTMSSGLAQAQNEQIVFSTPNLAMPFEVHMQRTAVKAAKELGVNLQV 59

Query: 60  KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
             +     K +  +++    GA+GFV+   D    S  V + +   + V+ +D      K
Sbjct: 60  LDSQGSSPKQVADLENAITRGAQGFVVSPNDVNAVSGAVTEIQDAKLPVVTLDRSVKTDK 119

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
                 VP       K G    Q +   ++ R  +  +  V+        +   RT G  
Sbjct: 120 K-----VPHFGANNYKGG----QAIGDFVKARFPNGADI-VLLTGQPGSSSNIERTQGIR 169

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
           D+LKA G    ++    T +           S+L   P+ +  +I+  ND   LG + A 
Sbjct: 170 DSLKAGGSKY-RLVADQTGNWMRSEGMRIVESVLPSLPK-RPQVILSANDDMALGAIEAL 227

Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
           + QG K  +++  G + V     L++ +      +    P   GY  ++ +         
Sbjct: 228 QSQGLKPGEVMVTGFDAV--PEALARVRDGWLAATADQRP---GYAVTQAMTQLTNNIRT 282

Query: 300 PPKFTEVT-DVVLITRDNFKEELEKKGLGGK 329
               T       +IT+DN   + E+ G  GK
Sbjct: 283 KSAITGADYPPTMITKDNL-NDAERIGEAGK 312


>UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional regulator n=3
           Tax=Clostridiales RepID=C6PN56_9CLOT
          Length = 322

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 60/299 (20%), Positives = 110/299 (36%), Gaps = 21/299 (7%)

Query: 22  MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA-VPDGEKTLNAIDSLAASG 80
             +  K G+       P+FQ   K      +  G ++I +    D  K ++ I+ +   G
Sbjct: 37  TKKKHKFGYTCMTMNNPFFQVLEKSIRAEVEKNGDQLITMDPAMDVSKQIDQINDMITQG 96

Query: 81  AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140
            +   +   D +     +   +  ++ +I  D +  +           V       G+  
Sbjct: 97  VEAVFLNPVDWEGVRPGLEALKKANIPIINFDTEVKDMN----YVTAYVGSDNKNAGKVC 152

Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSN 200
           G +L K     G       +  +    +++   R  G   A++   F    I        
Sbjct: 153 GDDLVKRYPNGGK------IAILNCPTMNSINDRIAGFKSAIEGKNF---TIVAEQDGKG 203

Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260
           D+  +   A+ +L  H ++    I+G ND T LG + A +    K + I+  G++G    
Sbjct: 204 DLQTSMKLADDILQSHSDI--VAIMGGNDPTALGALAACKSA--KQSKILIYGVDGSPDA 259

Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
            +   A    F G+   SP   G KS+E+ Y  + K     K T V    LI +DN  +
Sbjct: 260 KK-EIASGGQFVGTGAQSPKQIGVKSAELGYKVLNKQNV-EKKTPVQTF-LINKDNVSK 315


>UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protein n=16
           Tax=Streptococcaceae RepID=D2BKS5_LACLK
          Length = 324

 Score =  134 bits (337), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 95/299 (31%), Gaps = 23/299 (7%)

Query: 22  MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDSLAASG 80
               L +G  +     P+F +         K+   +  +  A  D    LN + +  +  
Sbjct: 45  KPNELNIGVSISTTNNPYFVSMNNAIKSMAKEKNTKLTVSDAQNDSATQLNNVQNFISQN 104

Query: 81  AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140
               +I   D       +  A    + VIA+D    +  G  + T   V       G+  
Sbjct: 105 VDAILINPVDSDAIVPAIKAANNAHIPVIAMDR--GSNGGTVLTT---VASDNVAAGKMA 159

Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSN 200
            Q + K + K    ++ S               R  G     K  G     I    + + 
Sbjct: 160 AQAVEKLVGKNVKVLELSGT-----PGASATIDRGKGFNSEAKTLG---LNILSSQSANF 211

Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260
           D     +   +ML  H +V+   I   ND   LG  +A +  G K   I   GI+G    
Sbjct: 212 DRTTGLNTTQNMLQSHKDVQ--AIFAQNDEMALGAAKAVQATGQK---IAIFGIDGESET 266

Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
            +  KA       ++   P   G  + +  Y++               + L+ +DN  +
Sbjct: 267 HDAIKA--GTMTATIAQQPAKIGEMALQATYDYYQGKKIAHMINS--PIYLVDKDNVDQ 321


>UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Proteobacteria
           RepID=Q98LI2_RHILO
          Length = 315

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 62/325 (19%), Positives = 116/325 (35%), Gaps = 24/325 (7%)

Query: 3   KFTKALAAIGLAAVMSQSAMAEN-LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV--- 58
           + T   A + L A+M  + +A++ +K+GF       PW     +   K   +   +V   
Sbjct: 9   RTTALAATLVLGAMMPGAVLAQDKIKIGFSQGTMNHPWRVAMVEGNKKYAAEHYPDVDLI 68

Query: 59  IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
           +     D  K +  ++SL A G K  +I     +  + +V +A    +KV+ +D +    
Sbjct: 69  VTDGNNDASKQVADVESLIAQGIKVLMISPLTEQALTPVVKEAMDAGIKVVTLDRKVNTP 128

Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
                     V      +G   G+ L K++  +G  ++                 R  G 
Sbjct: 129 ------VTVHVGGENLPLGVGAGEFLAKKLNGKGNIIELQGTA-----GASATIDRNKGF 177

Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238
            +A+  A  P+ ++            A      M+ +    +   +   ND   LG ++ 
Sbjct: 178 AEAI--AKHPDMKVVASQNCDYTRDKAVKFMEDMVQRFGPGQIQAVYAHNDEMALGAIQV 235

Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
            E  G    ++  +GI+G +   E  K    G   +    P V   +  E  Y     + 
Sbjct: 236 LEAAGR-LNEVAVVGIDGQETAFEAVKQ---GKLAATFVYPFV-APEGIETAYKVAKGEE 290

Query: 299 EPPKFTEVTDVVLITRDNFKEELEK 323
            P   T     V +T DN  + + K
Sbjct: 291 VPETIT--LPTVSVTPDNIADMIGK 313


>UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-binding protein IbpA
           n=3 Tax=Caulobacteraceae RepID=B8H228_CAUCN
          Length = 326

 Score =  134 bits (336), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 56/309 (18%), Positives = 104/309 (33%), Gaps = 18/309 (5%)

Query: 13  LAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLN 71
           +       A AE   +        +P+F    +  +     LG +V +  A  +  K ++
Sbjct: 28  MTGCARGGAEAE---VVVSFNDLSQPFFVAMRRELEDEAAKLGVKVQVLDAQNNSSKQIS 84

Query: 72  AIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMM 131
            + + A  GAK  ++   D K  +          + VI+VD      K      VP V  
Sbjct: 85  DLQAAAVQGAKVVIVAPTDSKALAGAADDLVEQGVAVISVDRNIAGGK----TAVPHVGA 140

Query: 132 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ 191
                G      + K             V+        ++  R  G  D L A G P  +
Sbjct: 141 DNVAGGRAMADWVVKTYP-----AGARVVVITNDPGSSSSIERVKGVHDGLAAGG-PAFK 194

Query: 192 IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 251
           I    T ++    A     ++L    +    +I+ +ND   +G + A    G  +A +  
Sbjct: 195 IVTEQTANSKRDQALTVTQNILTSMRDTPPDVILCLNDDMAMGALEAVRAAGLDSAKVKV 254

Query: 252 IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311
           IG + +     L++ +A     ++  +P +    +     + +         +     VL
Sbjct: 255 IGFDAI--PEALARIKAGEMVATVEQNPGLQIRTALRQAVDKIKSGAALKSVS--LKPVL 310

Query: 312 ITRDNFKEE 320
           IT  N  E 
Sbjct: 311 ITSGNLTEA 319


>UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Geobacillus RepID=C6QL47_9BACI
          Length = 340

 Score =  134 bits (336), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 54/304 (17%), Positives = 108/304 (35%), Gaps = 20/304 (6%)

Query: 22  MAENLKLGFLVKQPEEPWFQTEWKFADKAGK-DLGFEVI-KIAVPDGEKTLNAIDSLAAS 79
            +  + +G  +   ++ W         +  K     EVI   A+ D  K L+ +++    
Sbjct: 53  KSGKIVIGAALPDFDDKWLSYLQDGMKEYEKTQKDVEVIYVDAMNDASKQLSQVENFIQQ 112

Query: 80  GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139
                V+   D      +V KA   ++ ++ V+  F             V   + K G  
Sbjct: 113 KVDAIVLIPVDTVSAPEMVDKANQANIPIVVVNRIFDGVD----KATAYVGSESIKAGIM 168

Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199
           Q +E+ K +  +G     +  M   A       +RT G+   +K   +P+ ++    T  
Sbjct: 169 QMEEVAKLLNGKGKIAIMNGQMGHEAQ-----IKRTEGNKQVIKK--YPDMKVVLEGTAE 221

Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259
            D         + L    ++    +V  ND   +G + A E +G K  D+I  G++    
Sbjct: 222 WDRAKGMSLMENWLQSGKKID--AVVCNNDEMAIGAIMALEDEG-KLDDVIVAGVDAT-- 276

Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
              L   +      ++  +    G    E+       +    +        L+T+DN +E
Sbjct: 277 PDALEYVKEGKLKVTVFQNAKGQGQLGLEVAIKAAKGEKV--EKFNWIPYELVTKDNVEE 334

Query: 320 ELEK 323
            ++K
Sbjct: 335 YIKK 338


>UniRef50_C1DLC8 ABC transporter substrate binding protein n=3
           Tax=Gammaproteobacteria RepID=C1DLC8_AZOVD
          Length = 315

 Score =  133 bits (335), Expect = 6e-30,   Method: Composition-based stats.
 Identities = 63/318 (19%), Positives = 125/318 (39%), Gaps = 22/318 (6%)

Query: 5   TKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL--GFEV-IKI 61
           T+A+    +  +   +A+A +L+LG  V Q +  +     +   +  + +  G  + ++ 
Sbjct: 13  TRAVLFATVLCLAGSTALA-DLRLGVSVGQFDN-YIAYLVRAMQERARQVPGGVTLQVED 70

Query: 62  AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121
           +  D  + L  ++S  A      ++   D      I  +A    + ++ ++ +    +  
Sbjct: 71  SGSDVVRQLGQVESFIAQQVDAIIVNPADTAATGGITERATRAGIPLVYLNSRPEVRE-- 128

Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181
               V  V     ++G+ Q + L ++M  +G    + A++       DT R+RT G  D 
Sbjct: 129 FPAGVVFVGTDERRLGQMQMEYLAEKMGGKG----DLAILLGRLAHDDT-RKRTAGVKDV 183

Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241
           L  A +P+ ++ +  +         D  N+ L    E     +V  ND   +G   A   
Sbjct: 184 L--ARYPQIRVVEEQSGDWQRDKGLDLTNNWLSSGREFD--AVVANNDEMGIGAAMALRQ 239

Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301
            G +  ++   GI+G      L+         +LL  P   G ++ ++    V KDV   
Sbjct: 240 AGRR--EVSVGGIDGT--PDGLAAIARGQLAVTLLRDPVAMGEEAVDVALRLVRKDVVQG 295

Query: 302 KFTEVTDVVLITRDNFKE 319
                  V LIT DN  +
Sbjct: 296 DVW--IPVHLITPDNHTQ 311


>UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Geodermatophilus obscurus DSM 43160
           RepID=D2S5J9_9ACTO
          Length = 335

 Score =  133 bits (335), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 64/341 (18%), Positives = 122/341 (35%), Gaps = 35/341 (10%)

Query: 5   TKALAAIGLAAVMSQSAMAEN---------------LKLGFLVKQPEEPWFQTEWKFADK 49
             A   + LA   S +  A +               LK+G+ V   + P++Q+       
Sbjct: 4   LSAACVLALAGCASGAEQAGDVAADGGETTFEAKDPLKIGYSVYDLQNPYWQSYAAGVRA 63

Query: 50  AGKDLGFEVIKIAVPDGEK-TLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKV 108
             ++ G EV+       ++  ++    L   G    +I    P    + +  A G  + V
Sbjct: 64  GAEEAGIEVVIADQKSSQQEQVSGSLDLINQGISALIITPVQPSALPSTIDAAHGEKIPV 123

Query: 109 IAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANEL 168
           +  D       G   D    ++    + G    + + +++        +  V+ + A  +
Sbjct: 124 VVADI------GTEGDYDGYILSNNYEGGRLAAEHVVEKLGGTPG-PHQVGVIELHAGSV 176

Query: 169 DTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMN 228
                R +G +D L        +I      ++ + G F AA  ML  +PE+   +I   N
Sbjct: 177 -VGEERVSGFVDRLGEEE--NFEIVSSLDGNDTVDGGFTAAQDMLSANPELD--VIYAAN 231

Query: 229 DSTVLGGVRATEGQGFKAADIIG-IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSS 287
           D + +G  RA E  G   A+    IG +G D   +L   +     G++   P   G K+ 
Sbjct: 232 DDSAVGASRAMETAGVSVANGFTLIGFDGSDPALDLI--EQGVMSGTVAQDPFGQGQKAV 289

Query: 288 EMLYNWVAKD----VEPPKFTEVTDVVLITRDNFKEELEKK 324
           E     +  +     +    T    V ++T +N  E    +
Sbjct: 290 ETALALLNGEDPGYSDEATKTIYFPVEMVTAENVAEFRASR 330


>UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Bacteria RepID=A1WLB7_VEREI
          Length = 328

 Score =  133 bits (335), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 75/312 (24%), Positives = 125/312 (40%), Gaps = 20/312 (6%)

Query: 17  MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDS 75
           ++  A A  LK+GF     + P++    + A+ A K  G E+I   A  D  K  N I  
Sbjct: 25  LTPVAHAAGLKIGFSQVTLQSPFYVQLKEGAEAAAKAGGDELIFLDANGDVNKQNNDIQD 84

Query: 76  LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135
           L        +I   +P      +A A+   + VI VD + +N  G        +     K
Sbjct: 85  LLTRKVDVLIINPVNPDAVKPAIAAAQKNGVPVITVD-RSINGGGV----TAHLGRDNVK 139

Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTAR-RRTTGSMDALKAAGFPEKQIYQ 194
           +G+  G  +  E++K+G       V+ I  +   T    R  G  DALK +GF   +I  
Sbjct: 140 MGKAVGDAVLAELKKKGTT--RGKVIEIQGDAGGTVMAARRDGFHDALKGSGF---KIVA 194

Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254
            P        A  A   +L  HP+VK  ++   ND   +G ++     G K  D+   G+
Sbjct: 195 GPYAEYTRANAVTAMQDLLQAHPDVK--VVYAHNDDMAMGALKVLAEAGKK--DVFVAGV 250

Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314
           +G+   +  S A    +  + L  P   G  + +     +    + P F +      +T+
Sbjct: 251 DGLSE-ALASMAGGDQYVATALNDPRYLGDMTVQTARA-IKAGKKVPAFVDA-GTKAVTK 307

Query: 315 DNFKEELEKKGL 326
            N  E  ++ GL
Sbjct: 308 ANVGE-FKRTGL 318


>UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transport system n=1
           Tax=Gloeobacter violaceus RepID=Q7NMF9_GLOVI
          Length = 317

 Score =  133 bits (335), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 51/294 (17%), Positives = 98/294 (33%), Gaps = 19/294 (6%)

Query: 5   TKALAAIGLAAVMSQSAMAENL-KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV 63
             AL A+ L A     +   N   +G  +   ++ +++   +   +        V   A 
Sbjct: 13  LAALCALVLGACAQNGSEGGNRPVVGVSLLTRQDAFYRELERGLKEEAAKQKLTVRLDAG 72

Query: 64  P-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122
             D  +    +++         V+C  D +     +A+A   D+ V   D      + K 
Sbjct: 73  EFDLARQQGQLENYTVQKVAAIVVCPTDSQGIGPAIARANQADIPVFTAD-----IRAKE 127

Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182
              V  +       G   G+   K +  RG       V  I    + +   R  G  +AL
Sbjct: 128 GAVVSHIASDNVAGGRLAGEYAAKRLNGRGQ------VAIIDQPYIQSVIERVRGFEEAL 181

Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242
           K   +P  ++    T       +  AA  +L    ++    +  +ND +  G V A E  
Sbjct: 182 KP--YPNIRVVARLTGDGVRDRSLKAAEDLLQSQRKLD--AVFAVNDESAFGVVSAIEAA 237

Query: 243 GFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296
           G K   I  +G +  +   +L     +     +   P   G ++   +   +A 
Sbjct: 238 GRKG--IFVMGYDASEEARKLIAGGKSPLQADIAQDPYRIGQETIRAVATHLAG 289


>UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Candidatus Solibacter usitatus Ellin6076
           RepID=Q01TB6_SOLUE
          Length = 323

 Score =  133 bits (335), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 57/324 (17%), Positives = 117/324 (36%), Gaps = 13/324 (4%)

Query: 5   TKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADK--AGKDLGFEVIKIA 62
           T  LA+  L A        +   + F      EP+   +    +K  A +     VI  A
Sbjct: 8   TTGLASAVLLAGCGGEVKKKQFVVAFSQANNAEPYRAAQNALMEKLFAAQPDVKLVISDA 67

Query: 63  VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122
             D  K +  +++         ++   +    +A++ +A    + VI ++   +      
Sbjct: 68  QQDNSKQVAQVETFIRQKPDLLIVAPNERAALTAVMGQAMEAKIPVICLERDILQP---- 123

Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182
            +    +      IG   GQ +   + K+      + V       ++    R  G+ + L
Sbjct: 124 -NYTSYIHSDNVAIGRLAGQFIVGHLTKKYGKPAGNVVAMRGLLGVEGEINRDRGAKEIL 182

Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242
               +PE +I   P        A D    +L   P++   ++ G ND   +G     +  
Sbjct: 183 DK--YPEIKIVADPVADWIQAKAKDRMTEVLRAQPKID--VVYGHNDPMAIGAYLGAKEL 238

Query: 243 GFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302
           G +  ++I +G++G+   +   K    G   +    P +   K+ E+    + +    P 
Sbjct: 239 GREK-EMIFVGVDGLGGPAGGIKKVMDGVLAATFVYP-LWVDKAVEIGTRILREPGFVPA 296

Query: 303 FTEVTDVVLITRDNFKEELEKKGL 326
              V + V++T +N  +  EK  L
Sbjct: 297 KDYVLESVMVTTENAPQMYEKFTL 320


>UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic component n=12
           Tax=Proteobacteria RepID=Q2SMT1_HAHCH
          Length = 309

 Score =  133 bits (334), Expect = 8e-30,   Method: Composition-based stats.
 Identities = 62/321 (19%), Positives = 116/321 (36%), Gaps = 14/321 (4%)

Query: 5   TKALAAIGLA-AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIA 62
            K LA   LA A+ + S  A +LK+G  +   ++ +        + A KD   +V I+  
Sbjct: 1   MKKLALSVLASAMFAGSVAAADLKIGVSMAVFDDNFLTALRNGIETAAKDKSVDVQIEDG 60

Query: 63  VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122
             +    LN I +  ASG    ++   D     +I + A    + +I V+ Q +N    P
Sbjct: 61  KNEVGTQLNQIQNFIASGVDAIIVNPVDTDATVSISSDAEAAGIPLIYVNRQPINVNQLP 120

Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182
            +    V       G  Q +E+ + +  +G     + V+ +       A +RT    D +
Sbjct: 121 DNQA-FVASNEEVSGTLQTEEVCRLLGGKG-----NVVVMMGELSNQAAIQRTKDIHDVI 174

Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242
           K       ++    T         D   + L    E     ++  ND   +G ++A +  
Sbjct: 175 KRKECSGMKVVAEQTAEWSRLKGNDLMTNWLSAGLEFD--AVISNNDEMAIGAIQALKAS 232

Query: 243 GFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302
           G K   ++  GI+       L+  ++     ++  S    G  + +        +    K
Sbjct: 233 GRKMDSVVVAGIDAT--PDALAAMKSGDLDVTVFQSAKGQGAGAVDAAVRLAKGENVDQK 290

Query: 303 FTEVTDVVLITRDNFKEELEK 323
                   L+T  N  + L K
Sbjct: 291 VW--VPFELVTPANLDKYLSK 309


>UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM
           15053 RepID=C0C295_9CLOT
          Length = 330

 Score =  133 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 54/303 (17%), Positives = 102/303 (33%), Gaps = 20/303 (6%)

Query: 19  QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDSLA 77
            S       +G  V    E +     +  +K  ++LG + V+  A  D +  +  I++L 
Sbjct: 38  ASKKDGGYTIGCTVYYMTE-FVTLMTEGMEKKAEELGCDLVMLDAQQDAQNQITQIENLI 96

Query: 78  ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137
           A      ++   D       +       + ++ V+  F   +         V       G
Sbjct: 97  AQKVDVIIVAAVDSDAILPAIEMCDDAGIPLVGVNMLFNTEEPYH-----YVGPDDVLAG 151

Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTAR-RRTTGSMDALKAAGFPEKQIYQVP 196
           E + Q    E+   G       V+ +      +A+ +R  G+ + L         +    
Sbjct: 152 ELEMQNAIDEIGGEGN------VVILEGPIGQSAQIQRLEGNQNILDKYEGK-INVLADQ 204

Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256
           T +     A     + L      K   IV  ND   LG ++A E  G     I+  G++ 
Sbjct: 205 TANWSREEALTLVENWLETFSG-KIDAIVAHNDEMALGAIQALEAAGLT-DKIVVTGVDA 262

Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316
           +       K       G++     + G ++ +  Y+ +   V   K     D+  IT+DN
Sbjct: 263 ILDGCNAVKD--GTLLGTVYQDAGLEGSEAVQKAYDVLEGKV-TEKELSYIDMKWITKDN 319

Query: 317 FKE 319
             E
Sbjct: 320 VDE 322


>UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotrichia hofstadii
           F0254 RepID=C9MXF0_9FUSO
          Length = 328

 Score =  133 bits (333), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 56/306 (18%), Positives = 117/306 (38%), Gaps = 22/306 (7%)

Query: 14  AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTL 70
           A     +   + +K+  + K  +  ++++    A KAG++LG EV  I      +  K +
Sbjct: 26  AGAGKSANSGDKIKIELVSKGYQHEFWRSVEAGAKKAGEELGVEVNFIGPEKETEIGKQV 85

Query: 71  NAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVM 130
             +++          I   DP   + +  KA    + V+  D            T   + 
Sbjct: 86  GMVENAINKKVSALGIAALDPDALAVVAKKAMDAKIPVVTFDSNVKGD-----ITSSFIA 140

Query: 131 MAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEK 190
                 G   G++L K +  +G        +        TA  R  G  +AL  A +P+ 
Sbjct: 141 TDNKVAGAMAGEQLAKLINGKGK-----VAIVSHNPGTTTAIEREAGFREAL--AKYPDI 193

Query: 191 QIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADII 250
           +I        D   A      ++  +P++    I G N+ ++ G  +  E +G     ++
Sbjct: 194 KILNTQFSDGDKSKALAITLDIINANPDIAG--IYGTNEPSIFGIAKGVEEKGLT-GKVV 250

Query: 251 GIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVV 310
            +GI+  + +++    +     G ++  P   GY++ + LY     +    +    T  +
Sbjct: 251 LVGIDSSEDLAKF--LEKGVISGLVIQDPYNMGYQTVQQLYKLSKGEKVEKRID--TGAI 306

Query: 311 LITRDN 316
           L+T++N
Sbjct: 307 LVTKEN 312


>UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional regulator n=60
           Tax=Proteobacteria RepID=B2ILF2_BEII9
          Length = 333

 Score =  132 bits (332), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 57/312 (18%), Positives = 109/312 (34%), Gaps = 24/312 (7%)

Query: 13  LAAVMSQSAMAENLK-LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP---DGEK 68
           +  +   +A A++LK +G  V      +F    + A+   K++  +V  I V    D  K
Sbjct: 33  ILVLAMGAAGAKDLKSVGVSVGSLGNLYFVALSQSAEAKAKEINPDVKVITVDSNYDLNK 92

Query: 69  TLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPL 128
             N ID+  ASG    ++   DPK  +  + +A+   + V+A D   V A          
Sbjct: 93  QFNQIDNFIASGVDLILLAAADPKAIAPAIKRAQNAGIVVMATDVAAVGADAT------- 145

Query: 129 VMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFP 188
           V     + GE   Q +  ++   G       ++     ++ +   R +G   +L     P
Sbjct: 146 VQTNNVQAGEIACQYIVDKLGAAGGQ-----IIIQNGPQISSIIDRVSGCRKSLANN--P 198

Query: 189 EKQIY-QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA 247
           +  I                     L +H ++     V   D    G   A +  G    
Sbjct: 199 KITILSDDQNGKCSRDEGMKIMQGHLTRHRKIDAVFTVC--DPQATGSDLAAQQFGRN-- 254

Query: 248 DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVT 307
           +     ++G   + +  K   T    S    P     ++ ++ Y  +    +P     + 
Sbjct: 255 EFFIASVDGAPDIEKAFKGGNTRIQASASQDPYGMAQQAVQIGYE-IMNGKKPDNPMILM 313

Query: 308 DVVLITRDNFKE 319
              L+T+DN  +
Sbjct: 314 PSTLLTKDNVAD 325


>UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Proteobacteria
           RepID=A8I1T9_AZOC5
          Length = 324

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 65/317 (20%), Positives = 119/317 (37%), Gaps = 24/317 (7%)

Query: 5   TKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK---I 61
            K    +  AA+++ SA A +  +    K    P+FQT    A+ A K +G +V+     
Sbjct: 4   LKLFGVVLPAALLATSAFAADETIAVFTKNQTNPYFQTVRVGAEAAAKAMGAKVVHYIPT 63

Query: 62  AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121
                 + L+ I+ +        V    D K     V +     + V+ V D+  +A GK
Sbjct: 64  KPDSIPEQLSQIEDVIVKKPSAIVFVPVDYKAMVPGVEQINDAKIPVVNVTDR--SAGGK 121

Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181
            +     V      +G   G+ L KEM  +G     + V+        T   R  G  DA
Sbjct: 122 FLA---FVGADDYSLGLETGRYLLKEMGGKG-----NVVILEGVKGSLTNVDRVRGFNDA 173

Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241
           LK   F + ++      +           +++  HP++    ++  ND+  +G + A +G
Sbjct: 174 LK--EFKDVKLLASQPANYQRLQGLQVMENLMQSHPQIDG--VLAANDAMAIGAIEALDG 229

Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301
              KA     +GING     +  K  +     S   +  + G   + +    + K+    
Sbjct: 230 ANRKAK---VVGINGTKEAVDAIK--SGKLLASGDYNGFLQGCIGTMVAIRALRKETIVN 284

Query: 302 KFTEVTDVVLITRDNFK 318
           +   V    ++   N+K
Sbjct: 285 EV--VLKPTVVNASNYK 299


>UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic component n=14
           Tax=Lactobacillus RepID=Q03CA2_LACC3
          Length = 319

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/296 (18%), Positives = 98/296 (33%), Gaps = 22/296 (7%)

Query: 22  MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASG 80
             ++LK+G  +     P+F +         K     V +  A  D  K  + I+ L    
Sbjct: 44  APKDLKVGVSLSTLSNPFFVSVRNGIQDLAKKNKTNVQVSDAQNDTAKQNSNIEDLIQKK 103

Query: 81  AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140
               +I   D    +  V  A    + VI VD    ++ G  + T  LV   +TK G+  
Sbjct: 104 VDVLIINPVDSSAITPAVKDANDAGIPVITVDR---SSDGGKVLT--LVASNSTKGGQMA 158

Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSN 200
            + + +++ K     +   +           R R  G   A K     +  I    T   
Sbjct: 159 AKYMIEKLGKDAKIAELQGI-----PGASATRERGKGFDGAAKG----KLDIVSKQTAGF 209

Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260
           D         ++L  + ++    I   ND   LG V+A +  G K   I  +G +G    
Sbjct: 210 DRAKGLTVTENILQGNGDIVG--IFSQNDEMALGAVQAVKAAGKK---ITIVGFDG--EA 262

Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316
             +   +A     ++   P+  G  + +  Y+                +V     N
Sbjct: 263 DGIKAVKAGDMAATVAQKPEEMGRLALQAAYDHFNGKTVKKNVESPLSLVTTEDAN 318


>UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8RQT3_9CLOT
          Length = 354

 Score =  132 bits (331), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 56/301 (18%), Positives = 106/301 (35%), Gaps = 18/301 (5%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE---VIKIAVPDGEKTLNAID 74
           + +   E + + ++ K    PW+ +   FA +   +LG +    I     D EK ++ I+
Sbjct: 41  AGTEKKEGISVYWVGKTLNNPWWISVSDFAQQTADNLGVDLTIAIPQEEVDLEKQVSMIE 100

Query: 75  SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134
           +     A   V+           + KAR   +K++  D +  +           V     
Sbjct: 101 AAIEKKADAIVVSAASSDGVIPAIKKAREAGIKIVNFDTRISDTS----VIDAFVGGDDV 156

Query: 135 KIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194
               + G+ + +++   G     + +M     E  T   R  G M A   A +P  ++  
Sbjct: 157 AGAYKAGKYICEQLGGEGEVAIITGLM-----EQSTGVDRHAGFMQA--CAEYPGIKVVA 209

Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254
                     A D   ++L  +P VK   I   ND   +G V A +  G KA D+I +G 
Sbjct: 210 EQGAEWSSDKAADVTTNILTANPNVK--AIFACNDQMAVGMVNAAKAAGKKADDLILVGY 267

Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314
           +G+     ++          +       G    ++    V           + D  L+T 
Sbjct: 268 DGILDAVNMT--MDGDLDAFVSLPNLDEGAMGVKLATALVMNSDYHYDREILYDCTLVTG 325

Query: 315 D 315
           +
Sbjct: 326 E 326


>UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding protein, CUT2
           family n=5 Tax=Bacteria RepID=C1XFK3_MEIRU
          Length = 330

 Score =  131 bits (330), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 54/328 (16%), Positives = 114/328 (34%), Gaps = 24/328 (7%)

Query: 8   LAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP--D 65
           L+ +   A+   +   +   +  +     + ++ T  K A++A K LG E+I    P   
Sbjct: 14  LSLLIAVAMYGLAQQQKKYTIALIPGLTTDGFYITMHKGAEEAAKRLGVELIFQGGPEFS 73

Query: 66  GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD------QFVNAK 119
               +  ++++ A      +I   D     A + +A    +K+I VD       Q+   K
Sbjct: 74  PTTQIPVLNAIIARKPDAILIAPTDRNQLIAPLKRAHEAGIKIITVDTFIGENGQYQTGK 133

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
           G     +  V     + G    + L K + ++G     +         + T  +R  G  
Sbjct: 134 GNADFPLAYVASDNVEGGRIAARALAKAIGEKGKVYVSN-----VKPGISTTDQREQGFK 188

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
           + +K   +P   +       ND   A     + L ++P++    + G N  + +G     
Sbjct: 189 EEMKK--YPGITVLATQYNDNDANKAASQLAAALARNPDLAG--VFGANLFSAIGAANGV 244

Query: 240 EGQGFKAADIIGIGINGVDAVSELSK-AQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
           +  G + A    + +   D    +    +      ++   P   G  + E     +  + 
Sbjct: 245 KNAGKRGA----VKVAAFDCPESIINDIKGGTIDMAVCQHPAEMGRIAVEWAVKALNGEK 300

Query: 299 EPPKFTEVTDVVLITRDNFKEELEKKGL 326
            P ++   T   +I R N      K  +
Sbjct: 301 IPNRY--GTGYTVIDRANVDSAEAKAAI 326


>UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizobium sp. NGR234
           RepID=C3KN00_RHISN
          Length = 339

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 50/261 (19%), Positives = 102/261 (39%), Gaps = 11/261 (4%)

Query: 8   LAAIGLAAVMSQSAMAENLK-LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPD 65
           +A++ LA  ++  A A+ +K +G+ V   + P +Q   K A+K   + G +VI      D
Sbjct: 15  IASVALAGSLAVPAQAQEMKTIGWSVAYFDHPVYQLMMKGAEKVADEAGCKVIFADGKDD 74

Query: 66  GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDT 125
                + ID+  A G  G ++           V K     + ++  D +     G+P+  
Sbjct: 75  PSVQASHIDNFIAQGVDGIILTPTVSDPLIPAVKKVNDAGIPLVMADRRMQT-HGQPIKW 133

Query: 126 VPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAA 185
             LV     K G   G++  K +  +G     + V+        +   R     + ++  
Sbjct: 134 EALVSWDMVKSGTIGGEQTVKAIGGKG-----NIVVVEGTPGAGSTIDRGNAFYEVIEK- 187

Query: 186 GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK 245
            +P+ +I      + +     +   ++L +    +   I  M D    GG++A +  G  
Sbjct: 188 -YPDIKILAKIPANFNRAKGQEVTENILQRFKPGEIDAIYYMADEMTFGGLQAIKAAGR- 245

Query: 246 AADIIGIGINGVDAVSELSKA 266
             +   I ++G     +L +A
Sbjct: 246 LGEFKIISVDGQKEAMDLLRA 266


>UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Pirellula staleyi DSM 6068 RepID=D2R5M8_9PLAN
          Length = 333

 Score =  131 bits (329), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 42/290 (14%), Positives = 91/290 (31%), Gaps = 18/290 (6%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP-DGEKTLNAIDSL 76
           S         +G  +     P+F              G++V  ++   D  +  N +   
Sbjct: 43  STKGSVSKGTVGVSLLTTTNPFFNVIADNIKSELVKEGYDVEVVSGEFDVARQKNQVKDF 102

Query: 77  AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136
             +G    V+C  D +     + +A    + V   D   +       + V  +       
Sbjct: 103 IVAGHAAIVLCPCDSRGIGPAIQEATAAGIPVFTADIACLAPG---AEVVSHIATDNLGG 159

Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAG----FPEKQI 192
           G++  + + + +   G       V+ +     ++   R  G  + +             I
Sbjct: 160 GKQAAEAMIEAVGSAGGK-----VVILDFKAAESCILRVQGFKEVIDKHNSENPSSAITI 214

Query: 193 YQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGI 252
                       ++ AA   L  HP++    I  +ND + LG   A E    KA  +  +
Sbjct: 215 VSELPGDGQKDKSYKAAEDALQAHPDLAG--IFAINDPSALGARAALEKAN-KADQVKIV 271

Query: 253 GINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302
           G +G      +        +   +  PD  G + +  + ++   +  P +
Sbjct: 272 GFDGQ--PDGMQAIDEGKIFADPIQHPDQIGKRVAASIVSYFRGEEVPKE 319


>UniRef50_B3T6P5 Putative periplasmic binding protein and sugar binding domain of
           the LacI family protein n=1 Tax=uncultured marine
           microorganism HF4000_APKG2K17 RepID=B3T6P5_9ZZZZ
          Length = 302

 Score =  131 bits (328), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 112/320 (35%), Gaps = 24/320 (7%)

Query: 3   KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA 62
           K  K   A  LA ++   A A+ + L         P++ +  + A +   +LG +++ ++
Sbjct: 2   KLVKLFLASSLAIIIGTLAFADTVLLSMKGPGAGNPFWASVERGAREKAAELGVKIVVLS 61

Query: 63  VP---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
            P   D +  +N ++     G     I   DP   + ++  AR   + V+ +D + +N  
Sbjct: 62  PPQESDVQSQINQVEDQITKGVTAIAIAVTDPNALAKVIESARSAGIPVVFIDTKGINKG 121

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
                 V  +     K G +   +   +   RG DV     +        T + R  G+ 
Sbjct: 122 ------VTFIGTDN-KAGAKMAADFICDRVSRGSDVAILQGII----TQSTGKARADGAH 170

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
             LK  G     I      + D         ++L ++ ++K   +   ND+  LG V A 
Sbjct: 171 AGLKGCG---LNIVAEQPANWDRAQGRTVMENILTRNQKLK--AVFASNDNMALGAVEAL 225

Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
           +       D+I +G +            A     ++       G    E           
Sbjct: 226 KDADM-LNDVIVVGFDA--NPDAAKSILAGEMTATIAQFSYNMGAYGVEKALELAKGRSL 282

Query: 300 PPKFTEVTDVVLITRDNFKE 319
           PP     T  +L+T+ N  +
Sbjct: 283 PPVVDTGT--LLVTKKNAAD 300


>UniRef50_A6W303 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Marinomonas RepID=A6W303_MARMS
          Length = 325

 Score =  130 bits (327), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 64/315 (20%), Positives = 132/315 (41%), Gaps = 26/315 (8%)

Query: 7   ALAAIGLAAVMSQSAMAENLK-LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI---- 61
           ++ A+ L+ ++SQS+  + LK +G  V     P+F    + A    ++L  E +K+    
Sbjct: 31  SVIAVSLSPLVSQSSEPQPLKSIGISVADLGNPYFVQLVETASVKAEELAGEPVKMLIRS 90

Query: 62  AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121
              D ++ +  I+          V+   D    +A+VAKA+   +KVIAVD   VNA+G 
Sbjct: 91  DAYDWQRQIGQINDFIDQKVDLIVLTAADEYKVAAVVAKAQRAGIKVIAVD---VNAQG- 146

Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181
                  +     + G    ++L +++  +G  V  + V+      + +   R  G   A
Sbjct: 147 ---ADATITTDNVQAGAIACEKLAEKINYQGNFVIINGVL------VSSVIERVAGCKSA 197

Query: 182 LKAAGFPEKQIY-QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240
           L    +P+  +       +  + G  +A   ++ ++  +    +  +ND T  G +RA +
Sbjct: 198 LNK--YPDITLLSDRMNGTGSVEGGMEAMTYLMEEYDHID--AVFTINDPTAFGALRAAQ 253

Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300
               K  + +   I+G    +E+ K Q   +  + +  P     K+ E+  + +      
Sbjct: 254 QANRK--EFVLASIDGAPFATEIIKQQDNPWIATAVQRPIPMAEKAIEIGMDLLKGKEVA 311

Query: 301 PKFTEVTDVVLITRD 315
            +F  +    LI ++
Sbjct: 312 QRFI-LIPSTLIEKN 325


>UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC
           29174 RepID=A5ZT83_9FIRM
          Length = 324

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 71/326 (21%), Positives = 120/326 (36%), Gaps = 21/326 (6%)

Query: 5   TKALAAIGLAA---VMSQSAMAENLKLGFLVKQPEEPWFQTE-WKFADKAGKDLGFEVIK 60
           T A+    LAA    +S +   +   +G       EPW      + A  A K   FEVI 
Sbjct: 11  TAAMGVSVLAAGTVTVSAAEKKDKYVIGMSQCNLGEPWRVAMNDQIAMAAEKHPEFEVIF 70

Query: 61  -IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
             A  D  K +  I++    G    +    +    +  V+ A    + VI +D +    K
Sbjct: 71  ADAAQDNSKQIADIENFVQMGVDLIITSPNEATPLTNAVSAAYDAGIPVILLDRKIDGDK 130

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
                    +      +G   G+ +   +   G  V E   +  T+  +D    R  G  
Sbjct: 131 YTQ-----FIGADNVDMGRIAGEYIADTLLPDGGKVCEIKGLEGTSGGID----RDNGFR 181

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
           + +K     + +I  V         A   A  ML  + E+   L + +ND    G   A 
Sbjct: 182 EGIKKND--KIEIVAVNNADWLREKAITVAEEMLQTNDEID--LFLALNDPMAEGAYIAA 237

Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
           +  G +  DI+ +G +G+       ++   G   S+       G ++ E  Y  + +  E
Sbjct: 238 KNAGRE-GDILFVGFDGLPTPDGGIRSVMDGRL-SMTQVYPTGGTEAIESAYQLLVEGKE 295

Query: 300 PPKFTEVTDVVLITRDNFKEELEKKG 325
             K   +T   ++T DN +E LEK G
Sbjct: 296 LDKTLTLTS-EIVTPDNAEELLEKFG 320


>UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional regulator n=19
           Tax=Enterobacteriaceae RepID=A8GD74_SERP5
          Length = 309

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 114/318 (35%), Gaps = 21/318 (6%)

Query: 5   TKALAAIGLAAVMSQSA-MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG--FEVIKI 61
            K L    +   M  ++ +A+++K+G  +   ++ +     +      K  G      + 
Sbjct: 3   LKKLIVTSVLMCMLPASVLAKDIKIGVSMAYFDDNFLTILRQSMQSKMKQDGNVSGQFED 62

Query: 62  AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121
           A  D  + +  I++  + G    ++   D +    ++  A    + ++ V+ +    +  
Sbjct: 63  AKGDIAQQIQQIENFVSQGVDAIILNPVDTQGVKPMIKLAESAKIPLVFVNRR---PEVT 119

Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181
               +  V   +   G+ Q +EL K M  +G     + ++ +     +  R RT G  + 
Sbjct: 120 LPAGMAYVGSDSKLAGKLQMEELAKLMNGKG-----NVMILMGELSNEATRDRTRGVEEV 174

Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241
             AA +P  +I    T       A D      +   ++    I   ND   +G + A + 
Sbjct: 175 --AAKYPGIKILDKQTAKWGRKEAVDITTDWALTGQQID--AIASNNDEMAIGAILALKQ 230

Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301
              K + ++  G++G      L   +      S+       G  + +     V  +    
Sbjct: 231 A--KKSGVLVAGVDGT--PDALEYIKKGDLALSVFQDAKGQGEGAVQTAIQLVKGEKVES 286

Query: 302 KFTEVTDVVLITRDNFKE 319
               +    LIT+ N++E
Sbjct: 287 NV--LIPYQLITKANYQE 302


>UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Gammaproteobacteria RepID=A6VWF2_MARMS
          Length = 322

 Score =  130 bits (326), Expect = 8e-29,   Method: Composition-based stats.
 Identities = 57/330 (17%), Positives = 114/330 (34%), Gaps = 24/330 (7%)

Query: 2   HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTE-----WKFADKAGKDLGF 56
           +K  + +A   +      ++ A   K+G  V   +  W            AD   K+   
Sbjct: 5   NKIMRLIAVFTMLFAFVGTSYAAKYKIGISVPSADHGWTAGLLWWANKAAADLKAKEKDI 64

Query: 57  EVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116
           E   +A   G K +  ++ L   G    VI   +P     ++ +A    +  + VD +  
Sbjct: 65  EFFVVASSSGSKQVGDVEDLMIKGIDALVILPHNPATLQKVIEEAYDEGIYTVVVDREL- 123

Query: 117 NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTT 176
                P   V  +      +G    Q L KEM  +G       V+ I   ++   ++R  
Sbjct: 124 ---AHPAQNV-FIAGDNAGLGRVGAQWLAKEMSGKGN------VVVIEGLQIPINKQRVD 173

Query: 177 GSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 236
              D +  AG+P  +I            A     + L +HP++    +   +D  + G +
Sbjct: 174 AFNDVI--AGYPNIKILDSQPGDWSTQKALSVMENFLQKHPKID--AVWCQDDDMLKGVL 229

Query: 237 RATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHG---YKSSEMLYNW 293
           +A E  G        +G  G   + E+ ++       ++  SP +       +   + + 
Sbjct: 230 KAIEESGRT-DIKTVLGGAGSKDIIEMIQSGNKMVRATVTYSPSMIASGIALAVHGVKHE 288

Query: 294 VAKDVEPPKFTEVTDVVLITRDNFKEELEK 323
               +       +    L+T++N  +   K
Sbjct: 289 KLGYLYHEPSRVILGADLVTKENAADYYFK 318


>UniRef50_Q0SII4 ABC ribose transporter, substrate-binding component n=1
           Tax=Rhodococcus jostii RHA1 RepID=Q0SII4_RHOSR
          Length = 322

 Score =  129 bits (325), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 54/315 (17%), Positives = 106/315 (33%), Gaps = 26/315 (8%)

Query: 5   TKALAAIGLAAVMSQSAMAENLK--LGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKI 61
           T  +AA  + A  S +   ++    +G  +     P+F  E +  + A  +   EV ++ 
Sbjct: 23  TALIAAGTMTACTSGTGAGDDGTTTIGVTLNAASNPFFLAEGQAIETAAAEKRVEVSVQY 82

Query: 62  AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121
           A  D     + ID+         ++   D       + +A   ++ V+AVD   + A   
Sbjct: 83  ANADVAVQSDQIDTFIRQKVDSIIVDAVDSDGIGPALLRATQANIPVVAVDVTAIGADAT 142

Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181
                  V     + G      L +++   G       V  +    +     R  G  +A
Sbjct: 143 -------VTSDNVQAGREACTYLVEQLGGSGK------VAIVDGAAVSAISDRMQGCREA 189

Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241
           L A   P  ++            A + A+++L  +P+V  +   G+ND T +G   A + 
Sbjct: 190 LDA--HPGIEVVATQRADLTRDKAMNVASTILTANPDVDGF--FGVNDPTAIGISLAAQQ 245

Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301
           +G     +         A         +    +    P   G    ++    +A   +  
Sbjct: 246 KGVDVKVVGV-----DGAKQLTDLLGKSSIIATSGQDPAQLGRSGLDIAV-RLAGGEKVD 299

Query: 302 KFTEVTDVVLITRDN 316
               +   VL+T D 
Sbjct: 300 SAPTLIPTVLVTADT 314


>UniRef50_P39325 ABC transporter periplasmic-binding protein ytfQ n=141 Tax=Bacteria
           RepID=YTFQ_ECOLI
          Length = 318

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 65/301 (21%), Positives = 104/301 (34%), Gaps = 13/301 (4%)

Query: 26  LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGF 84
           L +GF     E  W   E   A    +  G  + I       E  + A+ S  A G    
Sbjct: 24  LTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQKQENQIKAVRSFVAQGVDAI 83

Query: 85  VICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQEL 144
            I          ++ +A+  ++ V  +D            T   V       G+  G  L
Sbjct: 84  FIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKDKSLYMTT--VTADNILEGKLIGDWL 141

Query: 145 YKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPG 204
            KE+  +  +V E             A  R  G  +A+K A  P  +I +  +       
Sbjct: 142 VKEVNGKPCNVVE----LQGTVGASVAIDRKKGFAEAIKNA--PNIKIIRSQSGDFTRSK 195

Query: 205 AFDAANSMLVQHPEVKHW-LIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSEL 263
             +   S +      K+  ++   ND  V+G ++A +  G K    I  G   +D V ++
Sbjct: 196 GKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAGLKPGKDILTG--SIDGVPDI 253

Query: 264 SKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEK 323
            KA   G   + +         + + L  +      P K T +T   L   D  KEELEK
Sbjct: 254 YKAMMDGEANASVELTPNMAGPAFDALEKYKKDGTMPEKLT-LTKSTLYLPDTAKEELEK 312

Query: 324 K 324
           K
Sbjct: 313 K 313


>UniRef50_UPI0001C31742 periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31742
          Length = 356

 Score =  129 bits (324), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 51/301 (16%), Positives = 101/301 (33%), Gaps = 21/301 (6%)

Query: 24  ENLKLGFLVKQPEEPWFQTEWKFADKAGK----DLGFEVIKIAVPDGEKTLNAIDSLAAS 79
               +G+ V      W     +    A +     +   V   +    +K ++ + S+ + 
Sbjct: 45  GKFTIGYDVYWLGNSWSTQLAEEFRAAAERNRDSIEKVVYTQSDNQVQKQISNVQSMISR 104

Query: 80  GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139
                ++    P     ++ +A    + VI V       +    DT   V       G  
Sbjct: 105 RVDAIIMTPISPSASVPVIQQANRAGIPVILVA-----GQADTRDTAAEVRADDIVFGRT 159

Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199
             + L +E+  RG     + +         T   R  G+ D      +P+ ++      +
Sbjct: 160 GAEWLVRELGGRGKIYVLNGL-----PGFSTDTLRWKGAKDVFDR--YPDIEVVADAHAA 212

Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259
            D   A  A ++ML  HPEV    +     +  LG ++A    G     + G   NG+  
Sbjct: 213 WDTARAKTAVSNMLAAHPEVDG--VWSQGGAMTLGAIQAFRAAGKPLVPMTGENNNGLMK 270

Query: 260 VSELSKAQATGFYGSL-LPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318
           V +         + S+ + +P   G ++     N +  D    +   + +   IT DN  
Sbjct: 271 VWDSLNRAGDRRFDSIGVVNPTWVGSEALTQTLNLLRGDEV--RKVNLVNPAPITSDNLA 328

Query: 319 E 319
           +
Sbjct: 329 D 329


>UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM
           13814 RepID=A6BDP6_9FIRM
          Length = 309

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 51/298 (17%), Positives = 109/298 (36%), Gaps = 21/298 (7%)

Query: 22  MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG-FEVIKIAVPDGEKTLNAIDSLAASG 80
             + LK G        P+F    +  +++ +  G   + +  + D +K    I  +   G
Sbjct: 24  TRKQLKFGATYMTMNNPYFVNMDENIEESVQAKGDILITRDPLQDQKKQNEQIKDMINEG 83

Query: 81  AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140
                +   D       +   +   + V  +D +  + +      V  ++      G + 
Sbjct: 84  IDVLFLQPVDRNKVRPALELCKKKHIPVFVIDSEVSDTEAV----VSTIVSDNYDAGVQC 139

Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSN 200
            +++ K           + ++ +    L++   R  G  D +K  G P+ +I +    + 
Sbjct: 140 AKDMMK-------KKTSANIIIVNQKALNSINERVKGFRDTIK--GHPQYKIVEEKESAA 190

Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260
           +   A      ++ +       +++G ND   LG + A +    K   ++  G++G    
Sbjct: 191 EFEIAMKVMEKIIYEKKNYD--VVMGGNDPIALGCIAAMQMTD-KTDQVMVYGVDGSPDG 247

Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318
             + KA      G+   SP   G K+ +  Y+++A +      T    V LIT DN K
Sbjct: 248 KAMIKA--GFLEGTAAQSPIKIGEKAVQTAYSYLAGETVKKHVT--IPVELITADNLK 301


>UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8RW63_9CLOT
          Length = 375

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 111/301 (36%), Gaps = 17/301 (5%)

Query: 24  ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAK 82
            +  +G+        +   E        +  GF++I   A  +  K ++ ++ L A    
Sbjct: 87  SDYLIGYSQLANTGTYRIAETNSMKDEAEKRGFKLIVTDAQDNTAKQVSDVEDLIAQNID 146

Query: 83  GFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQ 142
             ++   + +     +  A+   + VI VD       G  +D V  +       G+  G+
Sbjct: 147 LLILSPREFEGLETALQTAKENSVPVILVDRLAKGEAG--VDYVTYIATDFVWEGQAAGE 204

Query: 143 ELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDI 202
            L  +       ++ +  +        +A+ R TG    +        +I    T + + 
Sbjct: 205 WLKDKTGGTCNIIELTGTV-----GSSSAQDRATGFAGVVDQNE--GMKIIASQTGNFER 257

Query: 203 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA-ADIIGIGINGVDAVS 261
                   ++L  H   +   +   ND   LG V+A +  G+K   DI+ IGI+G   + 
Sbjct: 258 SEGQKVMENLLQAHGG-EVDAVFCHNDQMALGAVQAIKAAGYKPNEDILVIGIDG--EMD 314

Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEEL 321
                 A     +++ SP ++G  + + +   +A    P     + + V++   N +E +
Sbjct: 315 SFKSVIAGEMSATVVSSP-MYGPITFDTVEKILAGQEVPE--QTIMEGVVVDAGNAQENM 371

Query: 322 E 322
           E
Sbjct: 372 E 372


>UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM
           3353 RepID=C0EY05_9FIRM
          Length = 329

 Score =  129 bits (323), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 53/297 (17%), Positives = 115/297 (38%), Gaps = 20/297 (6%)

Query: 21  AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG-FEVIKIAVPDGEKTLNAIDSLAAS 79
           +      +G L      P+F+   +      +  G     + +  D +     ++     
Sbjct: 42  SEKSKRTIGALYMTMNNPYFEVINEEIKAVVESKGDVLETRDSGMDAKVQAKQVEKFIEE 101

Query: 80  GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139
                +I   D K   + + KA+   + VIAVD    N           V+    + GE+
Sbjct: 102 KVDCILINAVDWKKIGSSLEKAKKAGIPVIAVDALIYNRS----FVDGTVVSNNYQAGEQ 157

Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199
             ++L K  +K         ++ +  +E  +A  R  G  + L+ AG+  + + ++  + 
Sbjct: 158 CAKDLMKRRKK-------GKILFLVQSENKSAIDRIKGFKETLEKAGWKYENVGELECQG 210

Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259
             +  +      +L +  ++   +++ +ND + +G + A + +    +D++  G +G   
Sbjct: 211 Q-LELSQPLVEKVLNKTKDID--VVMALNDPSAMGAMAALDAEHM-LSDVLVYGADGSPE 266

Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316
              +          +   SP   G K+ EMLY  +  D +  +   +  V LIT+DN
Sbjct: 267 AKTMIYENK--MAATSAQSPRTTGKKTVEMLYKIL--DGKKTEKQCIVPVSLITKDN 319


>UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyadobacter fermentans
           DSM 18053 RepID=C6W799_DYAFD
          Length = 310

 Score =  128 bits (322), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 104/300 (34%), Gaps = 20/300 (6%)

Query: 24  ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGE-KTLNAIDSLAASGAK 82
           +NL +G  +   +  +        +   K++G E+I +       K +  ++S    G  
Sbjct: 30  DNLVIGATMLSMQNEFIVNVSDAMEAKAKEMGVELITVDAERSALKQVEQVESFIGQGVD 89

Query: 83  GFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQ 142
             ++   + +  S  +  A    + +I V+ +              V    T+      +
Sbjct: 90  AIIMNPAEVEASSPAIKLAMDAKIPIINVNSE------TSAKPTAFVGSDDTESARIAMK 143

Query: 143 ELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDI 202
            + +++  +G  +     M   A       +R  G+ D LKA   P  ++    +   D 
Sbjct: 144 YIAEKLGGKGNILMMHGFMGQAAQ-----IKRDNGAKDILKAN--PGLKLLAEQSGEWDR 196

Query: 203 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSE 262
                   + +  + + K   I   ND   +G V+A E  G K   ++ + ++ +     
Sbjct: 197 AKGMSLTENWIQSYGD-KINAIFAQNDEMGMGAVKALEAAGLK-GKVLVVSVDAI--PDA 252

Query: 263 LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELE 322
           L   +      ++  +    G K+ E       K+    +   +    L+ + N +  L+
Sbjct: 253 LQAVKKGTLDATVFQNAKEQGGKAIETAVKAAKKEAFEKEV--LIPFQLVDKGNVEGFLK 310


>UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthrobacter aurescens TC1
           RepID=A1R356_ARTAT
          Length = 314

 Score =  128 bits (321), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 50/308 (16%), Positives = 112/308 (36%), Gaps = 20/308 (6%)

Query: 17  MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP-DGEKTLNAIDS 75
            + +       +G  + +    ++        KA  D G+E++ +    +  + +N + +
Sbjct: 19  AANAGGTGKKTIGVSMPEFHSLFYVAAVDGMKKAAADEGYELVVLNANGNSSQQVNQVQN 78

Query: 76  LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135
           L        +    D   G+A VA+A+G ++ VIA+D +         D    +   + K
Sbjct: 79  LVTQQVGAVIFAMQDATAGAAGVAEAKGANIPVIAIDQRP------QGDVTTFIGSDSVK 132

Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195
                   L K+M  +G       V+        T   R+ G    L+    P+ ++   
Sbjct: 133 ASTELCDYLAKQMGGKGNLAIIKGVL-----GSSTEIERSKGCGSILEKN--PDIKVVST 185

Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255
                D   A++ A  +L  +PE++   I   ND        A        +++  + ++
Sbjct: 186 TNADWDENKAYNVAQDVLTANPELQ--AIFAQNDGMA--LGAAKAAAQAGRSNLKIVSVD 241

Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315
           G   V +    ++     ++   P   G  +       ++ +    +  ++   VL+T++
Sbjct: 242 GFPQVYDAI--ESGQVLATMSQEPYQMGELAVRTAIKAMSGEAGSIQKEQLQPTVLVTKE 299

Query: 316 NFKEELEK 323
           N +E    
Sbjct: 300 NLEEARSA 307


>UniRef50_C1D9L7 RbsB protein n=1 Tax=Laribacter hongkongensis HLHK9
           RepID=C1D9L7_LARHH
          Length = 330

 Score =  128 bits (320), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 62/296 (20%), Positives = 115/296 (38%), Gaps = 26/296 (8%)

Query: 27  KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPD--GEKTLNAIDSLAAS-GAK 82
           ++  ++K P  P+F      A +A  + G ++ IK+A  D   E+ +  ID + A   A 
Sbjct: 47  RIVLVMKSPTNPYFSELANGASRAQLETGIDLSIKVAHEDDALEQQIRLIDEVIAKHQAD 106

Query: 83  GFVICTPDPKLGSAIVAKARGYDMKVIAVDD----QFVNAKGKPMDTVPLVMMAATKIGE 138
             VI   D      ++A+AR   + VI + +    + V   G P+  VPL+ +       
Sbjct: 107 AIVIAPTDSIRLVPVLARARKAGIHVINIGNRLEPRIVALYGMPV--VPLISIDNASAAY 164

Query: 139 RQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTK 198
           +   +L + +  RG  V     +  T N     R+RT G++ A   AG    ++    + 
Sbjct: 165 QVAGKLAEGLP-RGSKVAIIEGLLGTNN----TRQRTEGALQAFSEAG---LRVVAKQSA 216

Query: 199 SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVD 258
                 A+     +L  +P+++   I   ND   LG  R    +G     +   G +G+ 
Sbjct: 217 RWKGDEAYQVTAQLLRDYPDLR--AIFCSNDMMALGAARYLREKGITG--VRLAGFDGIT 272

Query: 259 AVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314
                   +      ++       GY +  +  + +A    P     + D  L+T 
Sbjct: 273 EARSALHQRQ--LVATIDQHASEQGYLAVRLAVDAIAG--RPLAEETLVDTELLTA 324


>UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional regulator n=14
           Tax=Alphaproteobacteria RepID=Q28MQ8_JANSC
          Length = 343

 Score =  128 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 57/304 (18%), Positives = 116/304 (38%), Gaps = 26/304 (8%)

Query: 20  SAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG-FEVIKI---AVPDGEKTLNAIDS 75
           +A  +   +G ++K     +FQ     A+   ++ G +E++ +      D E  +NA+++
Sbjct: 58  AAAQDQPTVGLIMKSLANEFFQNMMVGAEAHAEERGDYELLAVGMQNETDFESQINAVEN 117

Query: 76  LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVI----AVDDQFVNAKGKPMDTVPLVMM 131
               G    V+   D +     + +A    + VI    A+D   +  +G  +     V  
Sbjct: 118 FITQGVDAIVVAPADSRAMVRPLRRAMEAGITVINFDVALDTGAMEQQGIELA---FVGP 174

Query: 132 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ 191
              ++G         E    G  V    V+       D A +R  G  DA+   G    +
Sbjct: 175 DN-RMGAEMAGNALGEALGEGGRV----VIIEGNPGADNATQRRLGFEDAIATHG---LE 226

Query: 192 IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 251
           + +  T   +   A     +ML  HP+++   ++  NDS  +G + A +  G    DI+ 
Sbjct: 227 LLESRTAHWETEEANQVFAAMLTAHPDLQG--VMAANDSMAIGVIEALDAAGR--DDILV 282

Query: 252 IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311
           +G + V AV  L   +      ++          + ++    +   V+   +   T + L
Sbjct: 283 VGFDAVPAV--LPMIEDGRMLATVDQFGQAMAANAIDLALEVLETGVDLEGWVR-TPIEL 339

Query: 312 ITRD 315
           +T +
Sbjct: 340 VTAN 343


>UniRef50_A6DJR9 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Lentisphaera araneosa HTCC2155 RepID=A6DJR9_9BACT
          Length = 326

 Score =  128 bits (320), Expect = 4e-28,   Method: Composition-based stats.
 Identities = 55/322 (17%), Positives = 104/322 (32%), Gaps = 29/322 (9%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLK-----------LGFLVKQPEEPWFQTEWKFADK 49
           M K   AL  +    + S    +++             LG  V     P+F    + A  
Sbjct: 1   MKKLLNALMLLACLGLFSSCGESDSASSNEPLQKNKKLLGITVMTLANPFFVELAEAAKA 60

Query: 50  AGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVI 109
             +  G+EVI ++  D EK    +    +      ++   +       +  A   ++ V 
Sbjct: 61  EAEKHGYEVIILSGDDAEKQAKQMKDFISQKVDAIIVAPKNTLAIGEPIKAANAAEIPVF 120

Query: 110 AVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELD 169
             D    +   K    V  VM      G+   Q +   +   G       V+ +   +  
Sbjct: 121 TADTGCTDPGAK---VVCNVMTDNFGGGKLAAQAMIDVLPNGGK------VLILDFKKAQ 171

Query: 170 TARRRTTGSMDALKAAG--FPEKQ--IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIV 225
           +   R  G  + +       P+K+  I      +     +  A    L   P++K   + 
Sbjct: 172 SCLLRVDGFKEVIAEHNEAHPDKKIVIVAELDGAAAEEPSKKATEDQLNATPDLKG--VF 229

Query: 226 GMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYK 285
            +ND + LG V A +    K  D+  IG +G+    E         +   +  P   G  
Sbjct: 230 AINDLSALGAVVALKKAN-KLQDVKIIGFDGLRIGKEAI--LRGEIHADPIQFPSEIGKL 286

Query: 286 SSEMLYNWVAKDVEPPKFTEVT 307
           + + +  +   D   P+    T
Sbjct: 287 TVQQILAYKNGDEVKPEILIAT 308


>UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Marinomonas sp. MWYL1 RepID=A6VZZ1_MARMS
          Length = 294

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 53/304 (17%), Positives = 107/304 (35%), Gaps = 24/304 (7%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-I 59
           + +FT    A+ LA+        +   +   +     P++        +  K     + +
Sbjct: 4   LKRFTA--IAVALASASFNLYAKDEPVVCASLLTQSHPFYIALGNGLKEGAKLQHINLKV 61

Query: 60  KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
            +A  D  K +N I+          VI   D K     + KA   ++ VI VD    N+K
Sbjct: 62  SVANQDLAKQINDIEDCITKNVDAIVISPVDSKGIRGPLKKAERANIPVITVDIGAENSK 121

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
                 V  +       G   G+   K++  +G       V+ ++   + +   R  G  
Sbjct: 122 -----IVSHIATDNYGGGVVAGKLAVKQLGGKGQ------VVMLSYPGISSVEARLQGFR 170

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
           DA+      + +I  V         +  +  +ML  +P+    LI    D  ++G   A 
Sbjct: 171 DAVADT---DIKIVAVQPGK-TREESMTSTINMLQANPDTD--LIFAFGDDMMIGAGLAV 224

Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
             Q  KA   + IG +G+    +    +     G +    D  G  + +++ +++     
Sbjct: 225 TKQKSKA---VVIGFDGMPEGIKAVD-ENDHIIGVVKQDADAMGKTAMKVVADYLNGKEV 280

Query: 300 PPKF 303
             ++
Sbjct: 281 KSEY 284


>UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8RPX4_9CLOT
          Length = 362

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 48/308 (15%), Positives = 109/308 (35%), Gaps = 24/308 (7%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP---DGEKTLNAID 74
           + S    +  +GF+       +  T    A    +  G ++   A       +  L  I+
Sbjct: 64  AASGNYGDKTIGFVGMTLNNEYHITLANGAKVEAEAKGVKIEVQAGDQHASADAQLGIIE 123

Query: 75  SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK-GKPMDTVPLVMMAA 133
           ++ A+   G ++         + + K +   + +I +D +  +         +P      
Sbjct: 124 NMIANKVDGILLVPSSSDGLESALTKCKEAGIPIINLDTKLTDESLANVGLDIPFYGTNN 183

Query: 134 TKIGERQGQELYKEMQKRGWDVKESAVMAITANELDT-ARRRTTGSMDALKAAGFPEKQI 192
            +  +  G+ + K  +      K +    +   E  T A  R  G ++           +
Sbjct: 184 YEGAKLAGEYVAKNFE------KGTKTAILKGIEGQTNAADRYNGFIEGAGDT----VTV 233

Query: 193 YQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGI 252
               T + ++   + AA +++  +P+V+  L    ND+  +G +RA +        I  I
Sbjct: 234 VAEQTANWEVDQGYTAAQNIISANPDVE--LFFCCNDNMGIGALRAIKEANM-QEQIQII 290

Query: 253 GINGV-DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311
           G + V +A++ +   +   F  ++   P   G    + +           +    T   +
Sbjct: 291 GFDAVSEALNLVENGE---FLATVAQYPAEMGKLGVDNMLKIFDGGEA--ESYIDTGTEV 345

Query: 312 ITRDNFKE 319
           IT+DN  E
Sbjct: 346 ITKDNVGE 353


>UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Spirosoma linguale DSM 74 RepID=D2QJX6_9SPHI
          Length = 317

 Score =  127 bits (319), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 50/306 (16%), Positives = 103/306 (33%), Gaps = 20/306 (6%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGE-KTLNAIDSL 76
           SQ    + L +G  +   +  +        DK  +  G E+I +       K +  ++S 
Sbjct: 31  SQDGEGKKLVVGATMLSMQNEFIVNVHDEMDKEAQKAGIELITVDAERSALKQVEQVESF 90

Query: 77  AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136
            A      ++   + +  S  VAKA    + +I V+ +              V     + 
Sbjct: 91  IAQKVDAIIMNPCEVEASSPAVAKALAAKIPIINVNSE------TSSKPSAFVGSDDVES 144

Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196
                + +  ++  +G     + VM           +R  G+ + LK   +P  ++    
Sbjct: 145 ARIAMKFIADKLGGKG-----NVVMMHGYMGQAAQIKREQGAREILKQ--YPNLKLLAHQ 197

Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256
           T   D   A     + +  +   +   +   ND   LG V+A    G K   +I + I+ 
Sbjct: 198 TGEWDRAKAMSLMENWIQSY-GSQINAVFAHNDEMGLGAVKALTDAGLK-DKVIVVSIDA 255

Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316
           +     L   +      ++  + +  G K+             P     +    L+T+DN
Sbjct: 256 I--PDALQAVKKGSLDATVFQNAEQQGAKAIATAIKAAKGQ--PFDKETLVPFQLVTKDN 311

Query: 317 FKEELE 322
             + L+
Sbjct: 312 LSKFLK 317


>UniRef50_A7II12 Periplasmic binding protein/LacI transcriptional regulator n=42
           Tax=Bacteria RepID=A7II12_XANP2
          Length = 347

 Score =  127 bits (318), Expect = 6e-28,   Method: Composition-based stats.
 Identities = 58/311 (18%), Positives = 111/311 (35%), Gaps = 24/311 (7%)

Query: 6   KALAAIGLAAVMSQSAM---AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA 62
            ++A  GLAA     A    A+   +G ++K    P+F    + A+ A   LG E+   A
Sbjct: 11  ASVAWAGLAATSPAGAAEKPADKPIVGIVIKTSTNPFFVKMKEGAEAAAARLGLELRSFA 70

Query: 63  VP---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
                D +  + A++SL A+GAKG +I   D +    ++ +AR   + VIA+D       
Sbjct: 71  GKMDGDTDAQVTAVESLIAAGAKGILITPSDSRAIVPVLEQARAKGILVIALDTPLDP-- 128

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
             P              G+  G+   K +       K  A++ +  N++     R  G +
Sbjct: 129 --PGAADATFATDNVLAGKLVGEWAAKTLGANAKSAK-VALLDLNVNQISVDVDRDQGFL 185

Query: 180 DALKA--------AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDST 231
                            + +I        +  G   A  ++L + P V   ++  +N+  
Sbjct: 186 KGFGVNVADPAVIGDEKDSRIVGHDVTLGNEEGGRRAMENLLQRDPYVS--VVYAINEPA 243

Query: 232 VLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLY 291
             G   A    G    D++ + ++G      +   +      + +  P        E + 
Sbjct: 244 AAGAYEALRSIGRDK-DVLVVAVDG--GCPGVRNVKDGVIAATAMQFPLAMAQMGVEAVL 300

Query: 292 NWVAKDVEPPK 302
            +     +P  
Sbjct: 301 KYATDGTKPKP 311


>UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding protein n=4
           Tax=Clostridium difficile RepID=C9XJ75_CLODC
          Length = 320

 Score =  127 bits (318), Expect = 7e-28,   Method: Composition-based stats.
 Identities = 54/299 (18%), Positives = 106/299 (35%), Gaps = 22/299 (7%)

Query: 23  AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGA 81
            ++L +G      +  +F    +   +  K+LG +VI      D  K  +AI+       
Sbjct: 39  KKDLTIGVSTITLQHQFFIDIDEGIKEKAKELGVKVIVNDPDQDVAKQTSAIEDFIQQNV 98

Query: 82  KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141
            G ++   D       V  A    M V+ VD           +    V   +   G++ G
Sbjct: 99  DGMIVLGTDNSAIVPAVEGAFE-KMPVVTVDAVLNTE-----NITSYVGTVSYDAGKKLG 152

Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201
           +   K + ++     E  +  +T  +     +R  G  DALK +     +I        D
Sbjct: 153 EYTKKYIDEKLGGKSE--IAIVTDLKSQIQMQRIDGFKDALKGS--ANVKILNSQPG-YD 207

Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261
              + +   +++  +P+V   +I    +++VLG   A E    K  D+  +G +  +   
Sbjct: 208 REESLNTVENLIQSNPDVD--IIYATAENSVLGAKAALESA--KNKDVKIVGFDLTE--- 260

Query: 262 ELSKAQATG-FYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
           E S     G     +   P   G  + E +   +  +            +L  ++N K+
Sbjct: 261 EASSGITDGTILAMIQQQPKEMGRLAVEAVVKAIKGEKVEKNIP--VPALLYDKENIKD 317


>UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alphaproteobacteria
           RepID=A6UE72_SINMW
          Length = 310

 Score =  126 bits (317), Expect = 8e-28,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 104/321 (32%), Gaps = 19/321 (5%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           M   T  +AA   + +   ++ AE  K+G  V   +  +F       +K  ++ G EV+ 
Sbjct: 1   MKLSTLLVAATTASVLALPASAAEVKKIGLAVPNLQADFFNQIKLGVEKHAREKGLEVVV 60

Query: 61  I-AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
           + A  D    ++ +  L       F+         +     AR   + VI VD     A 
Sbjct: 61  VDAKNDTNTQVSQVQDLMIQDIDAFIYIPAGAAAAAVPTRLAREAGIPVINVDRVPEGAP 120

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
           G        +   + +      + + ++    G        +            R TG  
Sbjct: 121 GD-----TFIAGESVESAYAVCKFIIEKAGGSGKMA-----IIHGQKGTTPEVDRFTGCK 170

Query: 180 DALKAAGFPEKQIYQVP-TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238
            A+        ++     +        F  A +ML  +P++   +I G  D   +G  +A
Sbjct: 171 RAIDEN--KGVELIDQQWSNMWSADEGFSIAQNMLQANPDIT--IIFGQADGLAMGAAKA 226

Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
            +        +I  G +G  +  E        F  +   S    G  + E      A + 
Sbjct: 227 VDVANLS-DKVIIGGYDGDVSALEYLARCKGPFIATATQSTQKMGVLAVESALAVAAGEK 285

Query: 299 EPPKFTEVTDVVLITRDNFKE 319
              + T   + VL T DN  E
Sbjct: 286 VEERQTP--NAVLTTCDNAPE 304


>UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_9BACE
          Length = 960

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/321 (17%), Positives = 118/321 (36%), Gaps = 28/321 (8%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           M   T     +GLAA       A   ++G + +  ++ W        +   + + ++ + 
Sbjct: 8   MKWITVLFCLLGLAACRQD---APRFRIG-VAQCSDDSWRHKMND--EILREAMFYDGVS 61

Query: 61  I----AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116
           +    A  D  K    +      G    +I   +    + IV +A    + VI VD + +
Sbjct: 62  VEIRSAADDNRKQAEDVHYFIDKGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKIL 121

Query: 117 NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTT 176
           + K         +     +IG   G  +   ++ +G  V+ + +          A  R  
Sbjct: 122 SDK-----YTAYIGADNYEIGRAVGNYIASSLKGKGNVVELTGL-----GGSTPAMERHQ 171

Query: 177 GSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 236
           G M A+  + +P+ ++      + +   A    +SML +HP++    +   ND    G  
Sbjct: 172 GFMAAI--SNYPDIKLIDKADAAWEREPAEVEMDSMLRRHPKID--AVYAHNDRIAPGAY 227

Query: 237 RATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296
           +A +  G +  ++I +GI+ +       +        +    P   G K  ++  N + K
Sbjct: 228 QAAKKAGREK-EMIFVGIDALPGKGNGLELVLDNVLDATFIYPTN-GDKVMQLAMNILEK 285

Query: 297 DVEPPKFTEVTDVVLITRDNF 317
              P +   V +  ++ R N 
Sbjct: 286 KSYPRE--TVMNTAVVDRTNA 304


>UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding protein n=7
           Tax=Thermotogaceae RepID=B9K719_THENN
          Length = 323

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 101/294 (34%), Gaps = 29/294 (9%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           M K    L+ + +  +         L +G + K    P++    +    AGK LG +   
Sbjct: 1   MRKLLVFLSVVLITGLSLA------LTIGVIGKSV-HPYWSQVEQGVKAAGKALGVDTKF 53

Query: 61  I--AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
                 D    L  ++S  A G  G  I   DP      + KA    + VI +D    ++
Sbjct: 54  FVPQKEDINAQLQMLESFIAEGVDGIAIAPSDPTAVIPTIKKALEMGIPVITLDTDSPDS 113

Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
            G+ +     +     + G   G  + + +  +G  V  +  +    +      +R  G 
Sbjct: 114 -GRYV----YIGTDNYQAGYTAGLIMKELLGGKGKVVIGTGSLTAMNSL-----QRIQGF 163

Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWL-IVGMNDSTVLGGVR 237
            DA+  +   E +I  +     D   A   A + L  HP++  +  +   N  +      
Sbjct: 164 KDAIADS---EIEIVDILNDEEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPSQ---AL 217

Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLY 291
             +  G K   +  +  +       L   +      ++   P + GY S  +LY
Sbjct: 218 VVKNAG-KVGKVKIVCFDTT--PDILQYVKEGVIQATMGQRPYMMGYLSVTVLY 268


>UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC
           27755 RepID=B0G492_9FIRM
          Length = 378

 Score =  126 bits (316), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 50/311 (16%), Positives = 101/311 (32%), Gaps = 20/311 (6%)

Query: 17  MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTLNAI 73
           M          +GF        +         +A   LG +    A       E+ L  I
Sbjct: 72  MVPDGDYSKYTIGFCGMTLNNEYHIIVANAVQQACNALGIKCEIQAGSQHASVEEQLTII 131

Query: 74  DSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPM-DTVPLVMMA 132
           ++  + G  G ++     +   + + +    ++ VI +D +  ++  K +   +P     
Sbjct: 132 ENYVSQGVDGIILVPAASEGLISALQECESANIPVINLDTKLDDSTLKTLGKDIPFYGTD 191

Query: 133 ATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQI 192
               G+  G+E+ +             V   T ++      R  G +D  KA       +
Sbjct: 192 NYVGGQLVGEEVAQMYPDGCKTAILRGVQGQTNDD-----DRYNGFLD--KAGDV--VDL 242

Query: 193 YQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGI 252
                 + +    + A  +++  + +++  +I   ND   +G  +A +  G     I   
Sbjct: 243 VAEQHANWETDQGYTAIQNIIQANKDLQ--VIYCENDLMGIGAYQAVDEAGLT-DQIKIF 299

Query: 253 GINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLI 312
             +GV     L       F  +    P   G      +    A      +    T   LI
Sbjct: 300 SYDGV--TEGLQYVVDGKFVSTCAQQPIKMGKLGVANMAKIFAGKDA--ESYIDTGCELI 355

Query: 313 TRDNFKEELEK 323
           T +N K+ LE+
Sbjct: 356 TSENAKQTLEE 366


>UniRef50_UPI0001B4C057 putative D-ribose-binding protein component of ABC transporter n=1
           Tax=Streptomyces hygroscopicus ATCC 53653
           RepID=UPI0001B4C057
          Length = 325

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 55/312 (17%), Positives = 101/312 (32%), Gaps = 20/312 (6%)

Query: 10  AIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEK 68
           A G     +++A  + + +G  V   +  +F    +      K  G +VI   A  D   
Sbjct: 25  ACGRGGNGAKTADGKQITIGLAVANLQADFFNQIKQSVTAEAKKKGIKVIVSDARGDAAT 84

Query: 69  TLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPL 128
            +N I    +      +            V  A    + V+ VD       GK       
Sbjct: 85  QVNQIQDFISRQVSAIIYIPAGATAAGVPVKAANRAKIPVVTVDRNPPGEPGKS-----F 139

Query: 129 VMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFP 188
           +   +       G  + KE   +G        +  T         R  G   ALK A  P
Sbjct: 140 IASDSVAAARTLGNYVVKESGGKGQLAILQGQIGTTPQ-----VDRQKGFGQALKNA--P 192

Query: 189 EKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAAD 248
             ++            A+  +  ML  HP +   ++ G  D+  LG  +A +  G K   
Sbjct: 193 GIKVVSQQPADWAQDKAYSVSQDMLQAHPGID--ILWGQADAMALGAAQAVKASGSKKKH 250

Query: 249 IIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTD 308
           +I +G +G   ++ L   +      +++      G  S     + +     P    ++  
Sbjct: 251 LI-VGFDG--DIAGLKAVRRGTVDATMVQQTRKMGRMSVNTAVDIIKGKKVP--AQQLQP 305

Query: 309 VVLITRDNFKEE 320
             L+T  + K+ 
Sbjct: 306 AFLLTSKDKKKA 317


>UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8RZI4_9CLOT
          Length = 347

 Score =  126 bits (315), Expect = 1e-27,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 112/298 (37%), Gaps = 23/298 (7%)

Query: 23  AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI-AVPDGEKTLNAIDSLAASGA 81
            E+ K GF       P+F    +  ++   + G E+I I A  D +K ++ ++ L   G 
Sbjct: 65  KEHYKFGFAATTMNNPFFHAIQEAIEEVVDENGDELIVIDAQNDAQKQISMVEDLLTQGI 124

Query: 82  KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141
               +C  D     + + +     + V+  D    +          +++      GE   
Sbjct: 125 DLLFLCPIDSASIKSSLEQCGKAGVPVVNFDTDVYDVDLVN----TIIVSDNYYAGELVA 180

Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201
           +++ K++       + S V  +T+   +   +R  G  D  KA G+   +I        D
Sbjct: 181 EDMMKKL------PEGSKVCILTSPSAEACIKRQNGFKD--KADGY--FKIVSEIDGKGD 230

Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261
              +   A  +L  +P++       +ND + +G V+A E Q  K  D++  G++G     
Sbjct: 231 TATSLGIAEDVLQGNPDL--GAFYAINDPSAIGCVQALESQ--KKTDVLVYGVDGQPMGK 286

Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
           +           +   SP   G +S    Y  ++ +        +    LI ++N  E
Sbjct: 287 QAISE--GTMEATAAQSPINIGKESVAAAYKILSGESVEKNI--LVPTFLIDKNNVTE 340


>UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 Tax=Rubrobacter
           xylanophilus DSM 9941 RepID=Q1ASV8_RUBXD
          Length = 338

 Score =  125 bits (314), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 101/305 (33%), Gaps = 18/305 (5%)

Query: 14  AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP--DGEKTLN 71
            +        E  +L  +V    + ++ T    A  A + LG  +               
Sbjct: 35  TSCGGGGGEGEGYRLALIVGVTGDEFYTTMECGARAAARKLGARLNVQGPEEFSPAAQTP 94

Query: 72  AIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMM 131
            ++++  S     +I   D       +  A   D+ V+ VD      +      +  +  
Sbjct: 95  ILNAVVQSNPDAILIAPTDRTAMVGPIQSAVNQDIPVVLVDTTIEKEE----IALARISS 150

Query: 132 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ 191
              + G   G+ L +++  +G       ++      + T  +R  G  +A+K   +P+ +
Sbjct: 151 DNVEGGRMAGEALAEQIGGKGK-----VLLISVKPGISTTDQRKQGFEEAIKQ--YPDIE 203

Query: 192 IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 251
                  ++D   A     S L  HP++    I G N  +  G        G K   +  
Sbjct: 204 YLGTEYCNDDPTQAASITTSTLQAHPDLAG--IFGANVFSGQGAGTGVRQAG-KRDQVSV 260

Query: 252 IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311
           +  +     +++   +       +   P+  G +  ++   ++    EP      T    
Sbjct: 261 VAFDAS--PTQVEDLRRGNLDVLIAQHPNDIGRRGVQIAVRYLESGEEPENKQITTGFTT 318

Query: 312 ITRDN 316
           +TRDN
Sbjct: 319 VTRDN 323


>UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n=1
           Tax=Saccharopolyspora erythraea NRRL 2338
           RepID=A4F8A2_SACEN
          Length = 334

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 109/306 (35%), Gaps = 20/306 (6%)

Query: 24  ENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEVIK-IAVPDGEKTLNAIDSLAASGA 81
               +G       EP+     +   KA + +  F+V    A  D  K ++ +++      
Sbjct: 47  SKYTIGMSQANLAEPYRVRMDEDIRKAAEKVPQFDVQFADAAKDNSKQVSDVENFMTKKV 106

Query: 82  KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141
              +I   +    + +V KA    + V+ +D +              +     +IG + G
Sbjct: 107 DLLMISPNEAAPLTDVVKKAYNEGIPVVVLDRKVEGE-----AFTTYIGADNVQIGRQAG 161

Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201
           +     +  +G  + +   ++ +      A  R  G M+ +  +   + ++        +
Sbjct: 162 EYFKNTLLPQGGKIVQLKGLSGSTP----AAEREKGFMEGIAGS---KIEVVDTADGEWE 214

Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261
                   +++L  HP+++   +   ND    G   A +  G K  D+  +GI+G+   S
Sbjct: 215 RSVGQQKMDALLKAHPDIQ--AVYAQNDPMAEGAWLAAQAAGRK--DLKFVGIDGLPIES 270

Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEEL 321
              KA   G   +    P   G ++ E     +      PK   +    L+TR+N  +  
Sbjct: 271 GGIKAVEQGRLSATNLYP-TGGEEAVEAARKLLIDCQPVPKEQTL-PTELVTRENAAQVY 328

Query: 322 EKKGLG 327
            +   G
Sbjct: 329 TRLNQG 334


>UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional regulator n=3
           Tax=Clostridium RepID=B8I2K0_CLOCE
          Length = 333

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 57/299 (19%), Positives = 115/299 (38%), Gaps = 26/299 (8%)

Query: 24  ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAK 82
           + + +G  +   +  +       A K   +LG E+ I     D    +N ++++ + G  
Sbjct: 52  KKIVVGMTLYSLKNEFTVRLSNAAKKKAAELGVELKIYDGNYDPNTQINQVETMISDGVD 111

Query: 83  GFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQ 142
             ++   D K  +  V KA   ++ VI V+ +  + K         V       GE + Q
Sbjct: 112 AIILNPQDAKACAVAVDKAAAANIPVIGVNTRVDSEK-----LTSYVGSKDVYAGELEMQ 166

Query: 143 ELYKEMQKRGWDVKESAVMAITANELDTAR-RRTTGSMDALKAAGFPEKQIYQVPTKSND 201
            +  ++  +G       ++ +      +A+  R+ G  + LK   +P+ ++    T +  
Sbjct: 167 AIADKIGGKGN------IVILDGPLGQSAQLERSEGIQNVLKK--YPDIKVLAEKTANWS 218

Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV-DAV 260
              A     + L    ++    +V  ND   LG  +A E    K  DI  IG++G+ DA+
Sbjct: 219 RSEAMTVMENWLQAFDKID--AVVAENDEMALGARKAIEA---KKLDIPTIGVDGITDAL 273

Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
             + K        ++       G K+ E+       +    ++    D   +T+DN  E
Sbjct: 274 DAVEKGT---LIATIFQDGAGQGSKALEIAVAKAKGENVDKEYW--IDFEPVTKDNVAE 327


>UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional regulator n=9
           Tax=Bacteria RepID=D1AQM7_SEBTE
          Length = 326

 Score =  125 bits (313), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 56/320 (17%), Positives = 115/320 (35%), Gaps = 20/320 (6%)

Query: 2   HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-K 60
            + TKA  A G  A   ++      K+G L+  P   +F    +  DKA  +   E+   
Sbjct: 20  KQETKAEGAAGNTAETKEAKK----KIGVLIPGPVG-YFVAVREGIDKAAAENNVEITYS 74

Query: 61  IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK- 119
            A  D  K L+ ++ L +       I   D       V  A   ++ ++A  +   + + 
Sbjct: 75  DAGWDASKQLSQVEDLISKKVDLIAIAAVDSNAAKTAVRMANEANIPILAFTNAIGDKEN 134

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
           G+    +  V     + G+  G+     + ++G  V    V+            R  G M
Sbjct: 135 GEYEGLITYVGQNEVETGKLTGELAKSLLGEKGGKV----VLIEGRPGTSPQINRRKGVM 190

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
           +AL        ++    T + +   A      ++ ++  +   +I+  +D++ +G   A 
Sbjct: 191 EALDTN--KNFEVVYTQTSNWEKEQALKIVEDLIQKNQTID--VIIAQDDNSAIGAGMAL 246

Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
           +    K   I+ IG+ G      L+  ++    G+   S    GY +      ++  +  
Sbjct: 247 KEANLK-DKILVIGLGGS--TEGLNAVKSGLIDGTTYMSAVEEGYTAITAAVKYLNGEKV 303

Query: 300 PPKFTEVTDVVLITRDNFKE 319
            P        V + + N + 
Sbjct: 304 EP--VTQMKQVEVNKSNVES 321


>UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8RSF4_9CLOT
          Length = 315

 Score =  124 bits (312), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 50/292 (17%), Positives = 104/292 (35%), Gaps = 21/292 (7%)

Query: 29  GFLVKQPEEPWFQTEWKFADKAGKDLG-FEVIKIAVPDGEKTLNAIDSLAASGAKGFVIC 87
           G        P+F    +  ++  +  G   + +  + D EK    I  +   G +   + 
Sbjct: 37  GATYMTRNNPYFDVLNEGIEEVVEANGDILLTRDPLQDQEKQNEQIQEMIDEGIQMLFLN 96

Query: 88  TPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKE 147
             D +     +   R   + +I VD    +        + ++     + G+    ++ K 
Sbjct: 97  PVDWEKVQPALDACREAGVGIINVDTVVKDRD----SVISIIETDNYQAGQLCALDMMKR 152

Query: 148 MQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFD 207
                    E+ ++ +      +   R  G +D +        Q+      + +I  +  
Sbjct: 153 K-------DEAKIVILDNPIQTSITNREQGFLDTIADNH--NYQVVYREAAAGEIEVSSH 203

Query: 208 AANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQ 267
               +L +  ++   +I+G ND T LG + A +    +   ++  GI+G      +    
Sbjct: 204 VMADLLRR--DISFDVILGGNDPTALGALAALQQA-RREEGVLIYGIDGSPDFKAILDV- 259

Query: 268 ATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
                G+   SP   G K++E  Y ++  D EP +        +ITRDN  E
Sbjct: 260 -GYVTGTSAQSPRSIGRKAAETAYRYL--DGEPVEKYISMPSTMITRDNLHE 308


>UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia hydrogenotrophica
           DSM 10507 RepID=C0CKL2_9FIRM
          Length = 348

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 51/304 (16%), Positives = 111/304 (36%), Gaps = 11/304 (3%)

Query: 19  QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLA 77
             +  ++  +G      + P+F    +      ++L  E+ ++ A  D    +N I +  
Sbjct: 48  TVSEGDSFLIGVASPNNKVPYFSKLVEGMTDLQEELNVELDVQDAQDDTNTQINQIQTFI 107

Query: 78  ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP--MDTVPLVMMAATK 135
           A G    ++     +    I  +    ++ ++ VD +   +  K   +D +  V     +
Sbjct: 108 AEGCDLIIMMPVQLESLIPIAMECNEAEIPIMTVDRKLSASDPKDVGVDLITHVGCDDVE 167

Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195
            G +QG+ +++ +   G        +        +   R  G  + L     P  +I   
Sbjct: 168 GGRKQGELVHQLLGDEGSIALIQGTL-----GASSQVLRQQGLEEYLSENA-PGIEIVAA 221

Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255
                D   A     + L +  + +   IV  +  + LG V A +           IG +
Sbjct: 222 QNSDQDQSQAITVTQNFLTRFAKGEIDAIVAQDPYSALGAVDAIKSASRDELLGTVIGYD 281

Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315
               V +  KA+    YGS L +P   G  + ++ Y  + +  E  +    T++ ++  +
Sbjct: 282 LPSEVLDSIKAKD--MYGSTLQAPYDMGALTLQVAYQCLTEGSEEIEANTYTEIPVVYIE 339

Query: 316 NFKE 319
           N +E
Sbjct: 340 NARE 343


>UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter n=4
           Tax=Alphaproteobacteria RepID=Q98J19_RHILO
          Length = 335

 Score =  124 bits (312), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 49/317 (15%), Positives = 94/317 (29%), Gaps = 18/317 (5%)

Query: 2   HKFTKALAAIGLAAVMSQSAMAEN-LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI- 59
            +F     A G   + + S  AE+ L +   V     P+F           +  G  +  
Sbjct: 24  REFLLTSVAAGAMVLAAPSVFAEDKLTILGSVPNLGFPFFVHMLNEIKAEAQAQGVNLTE 83

Query: 60  KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
                   K    I++         VI   D    +  + +A    + V+ +D +    +
Sbjct: 84  SDGQNSATKQTADIEAALVQKVNAIVISPLDVNALAPAIEEAVKAGVPVVTIDRRVDGVQ 143

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
           G     +  V     K GE +   +                          A  R  G  
Sbjct: 144 GI----LAHVGADNVKGGEAEASAMVAAFPNGAKLFHLQG-----QPGAGPAIDRNKGVH 194

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
           + L       + I++  T +     A     + L  +   K   I+  ND   LG + A 
Sbjct: 195 NVLDPLKDKYQIIFE-QTANFARAEALSVTEAGLAANG--KPDAIICANDDMALGALEAC 251

Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
                   D+   G + +     L   +     G++   P      + ++   +     E
Sbjct: 252 --AARNFTDVKIYGFDAL--PEALVAVRDGKLAGTVEQFPGQQSRTAVQIAVAYAKNKTE 307

Query: 300 PPKFTEVTDVVLITRDN 316
           P +   +   ++I +DN
Sbjct: 308 PKEKLVLLTPIVIGKDN 324


>UniRef50_B2SY92 Periplasmic binding protein/LacI transcriptional regulator n=7
           Tax=Burkholderia RepID=B2SY92_BURPP
          Length = 317

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 106/324 (32%), Gaps = 27/324 (8%)

Query: 1   MHKFTKALAAI-----GLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG 55
           +  F ++ AA+     GL+ + + +A A  LK+G   ++   P+F T  K  + A   +G
Sbjct: 11  LKTFARSTAALATLAFGLSFIAAPAAQAAPLKIGMTFQELNNPYFVTMQKALNDAAASIG 70

Query: 56  FEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQ 114
             V+   A  D  K ++ ++ +        ++   D     + V  A+       A    
Sbjct: 71  ATVVVTDAHHDVSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVTSAKK------AGVVV 124

Query: 115 FVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRR 174
                         V       GE   + L K +   G       V  +    +     R
Sbjct: 125 VAVDANANGPVDSFVGSKNYDAGEMACEYLAKSIGGSG------EVAILDGIPVVPILER 178

Query: 175 TTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLG 234
             G   AL  A  P  ++        +   A     +M+  HP +K   +  +ND   +G
Sbjct: 179 VRGCKAALAKA--PGVKLVDTQNGKQERATALSVTENMIQAHPNLKG--VFSVNDGGSMG 234

Query: 235 GVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWV 294
            + A E  G    DI    ++G        +   + F  +    P      +  +     
Sbjct: 235 ALSAIESSG---KDIKLTSVDGAPEAIAAIQKPNSKFVETSAQFPADQVRIALGIALAKK 291

Query: 295 AKDVEPPKFTEVTDVVLITRDNFK 318
                P       DV +I + N K
Sbjct: 292 WGANVPKTIP--VDVKMIDKSNAK 313


>UniRef50_B2IIE3 Periplasmic binding protein/LacI transcriptional regulator n=11
           Tax=Rhizobiales RepID=B2IIE3_BEII9
          Length = 314

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 50/314 (15%), Positives = 112/314 (35%), Gaps = 11/314 (3%)

Query: 8   LAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI--AVPD 65
             A  LAA+M+ +A AE   +G  ++  ++ +     +        +G   ++I  A  D
Sbjct: 5   FTAAVLAALMAGTASAE--TIGVSMQNFDDNFQTLLRQGLQARASQVGGVTLQIEDAQAD 62

Query: 66  GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDT 125
             + LN +++  A+     +I   D    S I A A+   + ++ ++ +  N    P + 
Sbjct: 63  IARQLNQVNNFIAARVDAIIITLTDTSAASGITAAAQKAGIPLVYLNLEPENINRLPKNQ 122

Query: 126 VPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAA 185
              V    T  G    +   + ++K+G   +    + +       +R RT+   + L A 
Sbjct: 123 A-YVGSKETDAGRLGAEAACQLLKKKGKAGQAQIYILMGDLAHQASRDRTSAVKETLAAG 181

Query: 186 GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK 245
                 I    + +     A D   + +     +    I   +D   +G ++A +  G  
Sbjct: 182 ECKGVTIADERSAAWMRTNAMDVTTNWITTGRPID--AIFANSDEMAIGAIQALKAAGVS 239

Query: 246 AADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTE 305
             D+I +G+N       L   +    + ++  +       + +                 
Sbjct: 240 KNDVIVVGVNAAQ--DGLVAMEDGDLHVTVFQNAKGQSASALDAAVALARGKSV--DRQV 295

Query: 306 VTDVVLITRDNFKE 319
           +    L+T +N  +
Sbjct: 296 MVPFELVTPENMAK 309


>UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ERG9_9FIRM
          Length = 355

 Score =  124 bits (311), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 113/315 (35%), Gaps = 19/315 (6%)

Query: 15  AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDG-EKTLNAI 73
           A  S+    + LK+GF        W   E +   K  +  G+E+I        EK +  +
Sbjct: 57  AKASEDGGEKKLKIGFSESTYSGAWRVAEVEDVTKYAEMNGYELIMTNADSNIEKQIGDV 116

Query: 74  DSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAA 133
           + L A      VI   D    +      +   + VI +D Q+++ K K  D +  +    
Sbjct: 117 EDLIAQKCDLIVIVPVDANAVAPAFEACKSAGIPVIDMDTQYLDGKWKE-DFITTIRSDQ 175

Query: 134 TKIGERQGQELYKEMQKRGWDVKESAVMAITANELDT-ARRRTTGSMDALKAAGFPEKQI 192
            + G+   +     +  +     ++ V+ IT N   + A+ R+ G  + +  A     ++
Sbjct: 176 YQQGQGCAEWTVGHVGDK-----DTTVLEITGNPGQSDAQNRSRGFNEYV--ADHSNIKV 228

Query: 193 YQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA-ADIIG 251
                       A +   ++     +    +I   +D   LG +   +  G K   D+  
Sbjct: 229 I-QQNGEWSRATAQEVVQNVAQSGQKFD--VIYCHSDEMALGALLGLKQAGLKPNEDVWI 285

Query: 252 IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311
           + ++G     +  KA      G+++      G    + +  + A D    ++        
Sbjct: 286 VAVDGQKEALDAIKADE---IGAIITCTPKGGDVLFDCINKYFAGDELEEEYFVHQST-- 340

Query: 312 ITRDNFKEELEKKGL 326
           IT +N  E  E +G 
Sbjct: 341 ITTENVDELYEVEGF 355


>UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-binding protein n=3
           Tax=Bacteria RepID=C3RLD7_9MOLU
          Length = 321

 Score =  124 bits (311), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 97/299 (32%), Gaps = 22/299 (7%)

Query: 21  AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA-VPDGEKTLNAIDSLAAS 79
           A     + G        P+F+       KA +  G  +I +  + D +K    I  L   
Sbjct: 36  ATVGQQRFGATYMTMNNPFFEVINNEIKKAVEANGDVLITLDPILDVDKQNEQILDLIDQ 95

Query: 80  GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139
                 +   D K     +  A+   + VI VD    +           +       G  
Sbjct: 96  RVDAIFVNPIDAKKIEIGLKAAKKAKIPVIVVDAPIYDESLVNCS----IASNNYDAGVL 151

Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199
             +++             + ++ +      +A  R  G +D + +      Q+       
Sbjct: 152 CAKDMM-------SKRDHAKIILLEHATAKSAVERIQGFLDTIASN--ANYQVINRADCD 202

Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259
             I  A      ML + P+V   +++ +ND + LG + A E    +  +++  G++G   
Sbjct: 203 GQIEIAMPTMKQMLKETPDVD--VVMALNDRSALGALAAIES--MEIDNVLVYGVDGSPD 258

Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318
           V EL          +   SP   G  + +     +       K      V LI+RDN  
Sbjct: 259 VKELIN--TGLIQATAAQSPVKMGQLAYQKAKALLENKKIEKKIE--VPVELISRDNIS 313


>UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional regulator n=11
           Tax=Clostridiales RepID=B8I0K4_CLOCE
          Length = 342

 Score =  124 bits (310), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 100/296 (33%), Gaps = 13/296 (4%)

Query: 19  QSAMAENLKLGFLVKQPEEPWFQTEWKFADKA-GKDLGFEVIK-IAVPDGEKTLNAIDSL 76
            S   + + +GF     E  W          A  +  GF++I   A    E  + A+   
Sbjct: 43  DSGSNKLITIGFSQVGAESDWRVANTASMKSALSEKNGFKLIFADAQQKQENQIKAVRDF 102

Query: 77  AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136
            +       I          ++ +A+  D+ VI VD     +          V     K 
Sbjct: 103 ISQDVDVIAIAPVTETGWETVLGEAKDADIPVIIVDRMIKVSDDSLFSC--WVGSDFQKE 160

Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196
           G    + L   M+++G   K++ V+            RT G  D +K   +    I    
Sbjct: 161 GVNAAEWLVNYMKEKGKTDKQNVVVLQGTIGSSAEIGRTKGFGDTIKK--YDNFNILAQQ 218

Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF-KAADIIGIGIN 255
           T         +   S L Q+ ++   +++  ND+   G + A +  G     D+  +  +
Sbjct: 219 TGEFTQAKGQEVMESFLKQYNDID--VVIAQNDNMAFGAIDALKAAGKAPGKDVTIVSFD 276

Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311
            V A        A     S+  +P +HG + +E+    +  +    K   V + V 
Sbjct: 277 AVKAA--FKSMIAGDMNVSVECNP-LHGPRVAELAKKLMNDEKV-EKIQYVDEKVY 328


>UniRef50_B2JDH5 Periplasmic binding protein/LacI transcriptional regulator n=83
           Tax=Proteobacteria RepID=B2JDH5_BURP8
          Length = 321

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 61/317 (19%), Positives = 103/317 (32%), Gaps = 24/317 (7%)

Query: 5   TKALAAIGLAA--VMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-I 61
           T A AA+ L    +   +A A  LK+G   ++   P+F T  K  + A   +G  V+   
Sbjct: 22  TLAFAAVMLGTPLLAPAAADAAPLKIGMTFQELNNPYFVTMQKALNDAAASIGATVVVTD 81

Query: 62  AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121
           A  D  K ++ ++ +        ++   D     + V  A+       A           
Sbjct: 82  AHHDVSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVTSAKK------AGAVVVAVDANA 135

Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181
                  V       G+   + L K +   G       V  +    +     R  G   A
Sbjct: 136 NGPVDSFVGSKNFDAGQMSCEYLAKAIGGSG------EVAILDGIPVVPILERVRGCKAA 189

Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241
           L  A FP  ++        +   A     +M+  HP +K   I  +ND   +G + A E 
Sbjct: 190 L--AKFPNVKVVDTQNGKQERATALSVTENMIQAHPNLKG--IFSVNDGGSMGALSAIES 245

Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301
            G    DI    ++G        +   + F  +    P      +  +          P 
Sbjct: 246 SG---KDIKLTSVDGAPEAITAIQKPNSKFIETSAQFPRDQIRLAIGVALAKKWGANVPK 302

Query: 302 KFTEVTDVVLITRDNFK 318
                 DV L+ +DN K
Sbjct: 303 TIP--VDVKLVDKDNAK 317


>UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Corynebacterium
           matruchotii RepID=C5VEK6_9CORY
          Length = 325

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 59/301 (19%), Positives = 104/301 (34%), Gaps = 21/301 (6%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSL 76
           + +  A    + F +     P+F    + A K   +LG  +  + A  D     N + + 
Sbjct: 40  TTTGSASAKTITFALSTQANPFFVQMRESAQKKADELGLAINFQDAADDSATQSNQLANA 99

Query: 77  AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136
           AASG    +I   D    +  V +     + V+AVD    NA     +    +       
Sbjct: 100 AASGTGVVIINPTDSDAMAPAVQQLVDEKIPVVAVDRAVNNA-----NVASYIASDNETG 154

Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196
           G++  + L   +   G       ++         +R R  G  + LK    P  ++    
Sbjct: 155 GKQAAKVLSDAINGEG-----EILVLQGKTGSSASRERGKGFDEGLK--DNPNIKVVAKQ 207

Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256
           T   +     D   ++L  HP VK   I   ND   LG + A   +     D+  IG +G
Sbjct: 208 TAEFERAKGLDVTTNLLQAHPNVK--AIFAENDEMALGAIEALGSK--AGKDVKVIGFDG 263

Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316
            +    L   +    Y S+   P     ++       +  +    K     +VV  T++N
Sbjct: 264 AE--DALKAIKDGRMYASIAQQPVKMAEQAVIEASKLLKGETATKKMQ--VEVVAATKEN 319

Query: 317 F 317
            
Sbjct: 320 V 320


>UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic sugar-binding n=4
           Tax=Vibrionaceae RepID=Q1Z3C1_PHOPR
          Length = 355

 Score =  124 bits (310), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 105/319 (32%), Gaps = 21/319 (6%)

Query: 9   AAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADK-AGKDLGFEVIKI-AVPDG 66
             + L A   + A +   ++G  +   ++ +           A K    E+I + A  D 
Sbjct: 56  GLMALVACGGEKADSNVTRIGVAIPNFDDTFLVNMKDSMSAYAAKQDNLELIFVDAKEDT 115

Query: 67  EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTV 126
            K L  I +       G ++   +      +        ++++ ++ +         D V
Sbjct: 116 VKQLGQIQNFIIQQVDGIILVPVNTDATQPMTDDILKAGIELVYLNRRPTYLP----DGV 171

Query: 127 PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAG 186
             V     + GE Q +         G ++     + +    ++ A  RT G  D  K   
Sbjct: 172 AYVGSEELRFGEEQAKYAASH--SDGGNIG----IIMGMMTVEAAILRTQGVEDFFKEK- 224

Query: 187 FPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA 246
            PE  I +  T             + +  +   K  +I+  ND   LG ++A    G K 
Sbjct: 225 -PEYNIIRKQTALWQRSQGMVVMENWI--NSGDKLDIIISNNDDMALGAIQALRAAG-KL 280

Query: 247 ADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEV 306
            D I IG++       L   +      ++          + +   + + K   P      
Sbjct: 281 DDTIVIGVDAT--PDGLMAIKNGALDATVFQDGRSQARGAIDAALSGINK--TPRDKITW 336

Query: 307 TDVVLITRDNFKEELEKKG 325
               L+T+DN  E   K+G
Sbjct: 337 IPAELVTKDNLAEFEAKQG 355


>UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geobacillus
           RepID=A4IPB9_GEOTN
          Length = 318

 Score =  123 bits (309), Expect = 6e-27,   Method: Composition-based stats.
 Identities = 70/337 (20%), Positives = 130/337 (38%), Gaps = 42/337 (12%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAE----------NLKLGFLVKQPEEPWFQTEWKFADKA 50
           + K TK  +   +   M+  A               ++  ++K    P+++     A  A
Sbjct: 2   IKKKTKLFSTAVVLTCMALLAGCGGSKGASGGGGEERVAVVLKTLSSPYWKYVEAGAKAA 61

Query: 51  GKDLGFEVIKI---AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMK 107
           GK+LG +V  +   A  +  + +N I+          V+    P     ++  A    + 
Sbjct: 62  GKELGVDVTVVGPNAESEVMQQINMIEDQLNQSPGALVVSPSQPDTVVPVLETAT---VP 118

Query: 108 VIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANE 167
           V+ +D        K  +    +     + G   G+ L   +QK         V  I+   
Sbjct: 119 VLLIDT-----DAKLKNKTSFIGTENYEAGYEGGKLLSSLLQK------GDKVAIISGAL 167

Query: 168 LDTARR-RTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVG 226
            +TA   R  G+  AL+ AG     I       +D   A     ++L ++ +VK   +  
Sbjct: 168 GNTATDERVKGAKAALEEAG---MVIVAEQPADSDKTKAMSVMENILQKNNDVKG--VFA 222

Query: 227 MNDSTVLGGVRATEGQGFKAADIIGIGING-VDAVSELSKAQATGFYGSLLPSPDVHGYK 285
            ND   LG +RA E +G    D+  IG +G ++AV  +   +     G++  +P   GY+
Sbjct: 223 ANDDMALGVLRAVEAKGL---DVKVIGTDGTLEAVESILDGK---LAGTIAQNPYKMGYE 276

Query: 286 SSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELE 322
             +     +  +    +      V +IT+DN +E+LE
Sbjct: 277 GVKNALAAINGEKVDKRINS--GVEVITKDNAQEKLE 311


>UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Proteobacteria
           RepID=MOCB_RHIME
          Length = 309

 Score =  123 bits (308), Expect = 8e-27,   Method: Composition-based stats.
 Identities = 62/322 (19%), Positives = 114/322 (35%), Gaps = 21/322 (6%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEV- 58
           M KF   +AA  L +  + +       +G  +   ++ +        +   K L G ++ 
Sbjct: 1   MKKFIIGIAAAVLVSTAAHAE-----TIGASMAVFDDKFGTLLRNGMEDYAKTLDGVDLQ 55

Query: 59  IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
           I+ A+ D  K  + I +  A+G    ++   D    + +   A    + ++ V+ + VN 
Sbjct: 56  IEDALNDVAKQQSQIQNFIAAGVDAIIVQPVDTDATTVMSKLAADAGIPLVYVNREPVNI 115

Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
              P      V       G  Q +E+ K +  +G      AV+ +       AR RT   
Sbjct: 116 DTLPEKQA-FVASNEVDSGTLQTREICKLLDGKGK-----AVVIMGELSNQAARMRTKDI 169

Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238
            D L        +I Q  T +       D   + L     ++   ++  ND   +G ++A
Sbjct: 170 HDVLATDQCKGIEIVQEQTANWQRTQGADLMTNWLSA--GIEFDAVIANNDEMAIGAIQA 227

Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATG-FYGSLLPSPDVHGYKSSEMLYNWVAKD 297
            +  G     ++   I G+DA  +   A A G    S+       G  S +        +
Sbjct: 228 LKAAGRSMDSVV---IGGIDATDDALAAMAAGELDVSVFQDAVGQGKGSIDAALKLSKGE 284

Query: 298 VEPPKFTEVTDVVLITRDNFKE 319
               K        L+T+ N  E
Sbjct: 285 AVERKIY--IPFELVTKANLAE 304


>UniRef50_C0C383 Putative uncharacterized protein n=2 Tax=Clostridiales
           RepID=C0C383_9CLOT
          Length = 336

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 52/293 (17%), Positives = 107/293 (36%), Gaps = 18/293 (6%)

Query: 26  LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLAASGAKGF 84
              GF V   + P+F T      +A +  G+ +I K    D       I  + A G    
Sbjct: 52  YVFGFSVIDMQNPYFITLEGATREAVESGGYRMITKDPASDAAAQAAQIQEMIAEGIDAV 111

Query: 85  VICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQEL 144
            +C  D +  +  +   +   +++I VD Q    +         +       G   G++L
Sbjct: 112 FLCPVDWEEITDSLKALKDAGVRIINVDSQVKEME----YVDAYIGSDNHNAGFICGEDL 167

Query: 145 YKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPG 204
            ++            +  +     ++   R TG  +A+  A     ++        +   
Sbjct: 168 IEK------RPDGGKIAILECPTQNSINDRITGFEEAIADAE-KGFEVVAREDTGGEFDR 220

Query: 205 AFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELS 264
           A +AA  +L ++P++    I+  ND   +G + A      K  D+I  G++G   + +  
Sbjct: 221 ALEAAEKILKENPDIT--AIMCGNDQIAVGAMTAVNLA--KMEDVIIYGVDGSPDIKKEF 276

Query: 265 KAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317
           K       G+   SP   G  +++   + +  +    +     +V +I +DN 
Sbjct: 277 KKAGCQIAGTAAQSPINMGKTAAKTGISILKGEEF--EREVYEEVFMINKDNV 327


>UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Tax=Proteobacteria
           RepID=B5XQK7_KLEP3
          Length = 317

 Score =  123 bits (308), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 62/313 (19%), Positives = 110/313 (35%), Gaps = 19/313 (6%)

Query: 10  AIGLAAVMS--QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDG 66
           A  + A MS   +A A       +    +  +F    K A  A K  G + VI  +  + 
Sbjct: 15  ATTMLASMSFISAASAAGPTYALVQINQQALFFNLMNKGAQDAAKASGKDLVIFNSNDNP 74

Query: 67  EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTV 126
               +AI++    G KG ++   D       V +A   ++ VIA+D              
Sbjct: 75  VAQNDAIENYIQQGVKGILVAAIDVNGIMPAVKEAAAANIPVIAIDAVLPAGP-----QA 129

Query: 127 PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAG 186
             V +   + G   GQ     +QK         ++    + +    +R  G  + LK+  
Sbjct: 130 AQVGVDNIEGGRIIGQYFVDYVQKEMGGQARLGIVGALNSAIQN--QRQKGFEETLKSN- 186

Query: 187 FPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA 246
            P+  I  V    N    A  AA +++  +P++    I    +  +LG + A E QG   
Sbjct: 187 -PKITIANVVDGQNVQDKAMTAAENLITGNPDLT--AIYATGEPALLGAIAAVENQGR-Q 242

Query: 247 ADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEV 306
            DI   G +       +S          L   P+  G ++   L +  +    P     +
Sbjct: 243 KDIKVFGWD--LTAKAISGMDGGYVTAVLQQDPEKMGAEALNALNSITSGKTVPKTI--L 298

Query: 307 TDVVLITRDNFKE 319
               ++T+ N   
Sbjct: 299 VPATVVTKANVDS 311


>UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasmic component) n=1
           Tax=Planctomyces maris DSM 8797 RepID=A6C460_9PLAN
          Length = 321

 Score =  123 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 56/306 (18%), Positives = 104/306 (33%), Gaps = 19/306 (6%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDSL 76
           S S        G   +    P+F    +   K  +  G   VI  A  +  K  N +  L
Sbjct: 32  SDSTADSGRLFGASFQTMNNPFFVDLGEGLKKELEANGDRLVILDAQFNSLKQKNDLSDL 91

Query: 77  AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136
                 G  +   + +     + +A    + +I VD     A  + +     V     + 
Sbjct: 92  ILQNVAGIFVNPVNWEGLKGSLLEANRKKVPIIIVDAPVKKADEELIVCT--VASDNVRA 149

Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196
           GE   Q L K   K       + ++ +  +       R  G    L+    PE +I  V 
Sbjct: 150 GELAAQALAKVNPK-------ARLVVLHLSVNKACIDRVAGFKTELEK--HPEMKILDVQ 200

Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256
                  GA      ++ ++P++    +  +ND   LG + A +    K   +  + ++G
Sbjct: 201 EAQGTTEGARPVMRDLIGRYPDLD--AVFAINDPNALGVISALDSAN-KLDQVTIVTVDG 257

Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316
             A   +   QA   + +    P   G  ++E +   +  +           V LIT +N
Sbjct: 258 SQA--GIKAIQAGKLHSTSAQFPREIGKIAAEKMLAHLKGEPVEKDVK--VRVELITAEN 313

Query: 317 FKEELE 322
            ++ LE
Sbjct: 314 AEQYLE 319


>UniRef50_C6V848 D-ribose-binding periplasmic protein n=11 Tax=Gammaproteobacteria
           RepID=C6V848_ECOBD
          Length = 357

 Score =  123 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 123/313 (39%), Gaps = 21/313 (6%)

Query: 10  AIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPD---G 66
           A+ L A +S SA+A++L L  + K  +  ++QT     + A K+LG +   +   D    
Sbjct: 50  ALSLLACVSSSALAKDLNLPVVSKGFQHEFWQTVKMGTEAAAKELGDKTSYVGPADETQI 109

Query: 67  EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTV 126
            + +  +++  A    G ++   D    + +V  A    +KV+  D    +        V
Sbjct: 110 AEQIQLVENAMAQKPNGLLLAALDANALAPLVETANSRGIKVVTFDSGINSDIP-----V 164

Query: 127 PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAG 186
             V     K G +    L  ++  +G    +  ++A  A    +A  R+ G M+ +K   
Sbjct: 165 SFVATNNRKAGAQAADALASQVNNKG----KVGIIAHVAGT-SSAIERSEGFMERMKE-K 218

Query: 187 FPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA 246
           +P+ ++  V     D   A D    M+  +P++    I G N+ + LG   A + Q  K 
Sbjct: 219 YPDIKVLPVQYSDGDPQKAMDKTIDMIQANPDLAG--IYGTNEGSTLGVANAIDSQNLK- 275

Query: 247 ADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEV 306
             +  IG +  +A+    K       G ++      GY+  + L   ++      +    
Sbjct: 276 GKVKVIGFDSTEAIINFLK--NGVIQGFVVQDAYQIGYQGIKTLNAALSGQAVEKEID-- 331

Query: 307 TDVVLITRDNFKE 319
             V  +  +N   
Sbjct: 332 IPVKFVNAENINT 344


>UniRef50_A1WJM2 Periplasmic binding protein/LacI transcriptional regulator n=5
           Tax=Proteobacteria RepID=A1WJM2_VEREI
          Length = 330

 Score =  123 bits (307), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 63/307 (20%), Positives = 116/307 (37%), Gaps = 21/307 (6%)

Query: 27  KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLAASGAKGFV 85
           K+G  +K    P+F  + + A   GK+LG+EV+   A    +K ++ ++ L   G K  +
Sbjct: 37  KIGVSMKTLSAPYFAAQMEAAKARGKELGYEVLATDAQGKLQKQISDVEDLVTRGVKLLI 96

Query: 86  ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145
           I   D +     V  A    +KV+ +D           + V  V  + +  G   G  + 
Sbjct: 97  INPADSEGLVNAVNNASANGVKVVVIDSTL----NPRANFVTQVQSSNSINGALVGHWVI 152

Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA-----LKAAGFPEKQIYQVPTKSN 200
           +E+  +   +     +          + R  G +       L+  G  +  +        
Sbjct: 153 EEVGNKSLKIA----LLSGEKGNPVGQERRLGVLSGIIEAQLRKFGKADLTVVGQGWGHW 208

Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260
           +  G   A   +LV + ++   +++G NDS VLG  RA E  G     ++       DA 
Sbjct: 209 NDEGGLKAMEDLLVANKDIN--MVLGENDSMVLGARRAIESAGRTGILLVA----AADAQ 262

Query: 261 SELSKAQATGFYG-SLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
            E       G YG + L  P +    + ++    V  +V+      +T    IT+ N  +
Sbjct: 263 KEALALIKQGKYGVTGLNDPALVARTAIDLGVKVVKGEVKDVPKQTLTTPAAITKGNVDK 322

Query: 320 ELEKKGL 326
               K +
Sbjct: 323 FYNPKAV 329


>UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport protein n=1
           Tax=Rhodopirellula baltica RepID=Q7UNV9_RHOBA
          Length = 438

 Score =  122 bits (306), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/305 (15%), Positives = 113/305 (37%), Gaps = 18/305 (5%)

Query: 24  ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTLNAIDSLAASG 80
           + L    + K     ++Q+    A++AG+++G ++         D ++ +N +     + 
Sbjct: 140 KELHFAVIPKGTTHIFWQSVKHGAEQAGEEIGAKITFRGPSKENDRDEQINVVQGFLNAR 199

Query: 81  AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140
             G ++   D       V +A    + V+  D       G   D V  V     + G+  
Sbjct: 200 VDGILLAPLDADALVRPVKEASRAGVPVVIFDSGLNTDPG---DFVSYVATDNFEGGKLA 256

Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIY-QVPTKS 199
           G+ +   + ++G DV    ++       ++  +R  G + ++  A +   ++        
Sbjct: 257 GEAMANALGEKGGDV----ILLRYEQGSESTHQREEGFLYSI--AEYSNIRVLSSDQYAG 310

Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259
                A D A ++L +  +    +     + T  G +RA   +   A  +  +  +  D+
Sbjct: 311 TTTESAIDKAQALLNRFGDEADGICTVC-EPTAEGALRALRERKL-AGKVKLVTFDSSDS 368

Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
           + E   A        +L  P   GY++ + +   +  +  P +F +    V   ++   E
Sbjct: 369 LRESLSA--GEVNAIVLQDPVAMGYQAVKTMAAHLRGET-PEQFIDTGVFVATAKNQDDE 425

Query: 320 ELEKK 324
            + + 
Sbjct: 426 NIARL 430


>UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding protein n=4
           Tax=Pseudomonas RepID=Q48J93_PSE14
          Length = 308

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 103/295 (34%), Gaps = 16/295 (5%)

Query: 4   FTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IA 62
           F K   A+ L  V SQ A A   ++G  + + ++ +        ++A +    ++    A
Sbjct: 3   FCKLFIAVLLL-VSSQWAAAS-YRIGVTIARVDDNFMTYVRSGLEEAARKENVQLQFEDA 60

Query: 63  VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122
             D  + +N +    +      ++   D    + +   A    M ++ V+      +   
Sbjct: 61  QGDVVRQINQVQGFLSQKVDAVIVLPVDTSATANMTRAAVEAKMPLVYVNRHP--DERVL 118

Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182
              V  V     + G+ Q + L ++M  +G     +  + +     ++   R+ G    L
Sbjct: 119 PKGVTTVASNDIEAGQLQMRYLAEKMGGKG-----TIALIMGDLAQNSTHDRSEGVKQVL 173

Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242
           K   +P   I +  T         D  ++ L+         IV  ND   +G   A +  
Sbjct: 174 K--DYPGITIVEQQTAEWQRNKGMDLTSNWLLAGRTFD--AIVANNDEMAIGAAMALQQA 229

Query: 243 GFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
           G    ++  +GI+G+     L+  +      S+   P      + +     +  +
Sbjct: 230 GKAKGEVAIVGIDGL--PDGLAAIKRGMLAASVFQDPKAQATTALQSAIKMIKGE 282


>UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Arthrobacter chlorophenolicus A6 RepID=B8H8H8_ARTCA
          Length = 322

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 106/319 (33%), Gaps = 22/319 (6%)

Query: 11  IGLAAVMSQS------AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAV 63
           + L      S        A+   +G +V   ++P          K   + G ++ I  + 
Sbjct: 19  LTLTGCAGSSNATSSGEAAKTYNIGVVVLDLQDPDLAHMTDAMKKTADEKGVKLNITDSK 78

Query: 64  PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPM 123
            D    LN ++ L        ++   D         +    ++ +  +  +F  A+G  +
Sbjct: 79  KDVGSELNQVEDLLTRQVDAVIMQPLDGDASQNAAKRVIAANIPLFILSTEF--AEGSDV 136

Query: 124 DTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALK 183
                + +  T  G+ Q + L K M   G  V  + V   +  +     RR  G    + 
Sbjct: 137 GYKSYIGVDDTVAGQMQAEYLNKLMPNGGNLVFAAGVYGASWTD-----RRKNGFDKTIN 191

Query: 184 AAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQG 243
                  +I            A       L + P  +   +V  ND   +G   A    G
Sbjct: 192 E----NFKIVAEFQAKGSRDDAKRNMEDTLQRFPSGQIDAVVANNDEMAIGAASAIADAG 247

Query: 244 FKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKF 303
             A     +G++G +    L   +      ++       G K+ E++ +++       ++
Sbjct: 248 RTAEFKAVVGVDGTEPA--LQDIEGGTMSATVRQDSAGQGVKAVEVVTDFLNGGNVDNRY 305

Query: 304 TEVTDVVLITRDNFKEELE 322
           T      LIT+DN  E L+
Sbjct: 306 T--LPFTLITKDNLSEFLK 322


>UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales RepID=C5EPY8_9FIRM
          Length = 356

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/319 (18%), Positives = 109/319 (34%), Gaps = 27/319 (8%)

Query: 14  AAVMSQSAMAEN---LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE------VIKIAVP 64
           A V S++A   N     +          W     +      + L  E       I  +  
Sbjct: 34  AQVSSEAAKPSNDGGYVVALCNYSIGNSWRAQMEQEFVAEAEKLKAEGVVSEYYITNSND 93

Query: 65  DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124
           D  K ++ +  L      G VI    P   +  V +A    +KV++ D+     +     
Sbjct: 94  DINKQISDMQDLITKKVDGIVITAASPTALAPAVEEATEAGIKVVSFDNVVDTDE----- 148

Query: 125 TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA 184
            V  V +  T+ G      L K++  +G  V  + +     + +     R  G+ +  K 
Sbjct: 149 QVATVGIDQTEFGRVCADWLVKKLDGKGKIVVLNGIAGTANDTM-----RWNGAEEVFKQ 203

Query: 185 AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF 244
             +P+ +I      S D      A  SML  +PE+    +     +   G + A    G 
Sbjct: 204 --YPDIEILGSANASWDYAQGKAAMESMLSAYPEIDG--VWSQGGAMTQGAIDAFIAAGR 259

Query: 245 KAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFT 304
           K   +   G NG  A+    + +  G        P   G ++   +   +  +  P + T
Sbjct: 260 KLVPMTSEGNNG--ALRAWIENRDNGLSCIAPSDPTYSGAEALRTVIKSLDGEEVPKRVT 317

Query: 305 EVTDVVLITRDNFKEELEK 323
              D+ ++T DN  +   +
Sbjct: 318 --LDIPVVTEDNVDKYYRQ 334


>UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protein n=23 Tax=Yersinia
           RepID=A4TI53_YERPP
          Length = 319

 Score =  122 bits (305), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 57/329 (17%), Positives = 111/329 (33%), Gaps = 20/329 (6%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           M K    L   G+   MS SA AE LK+GF  +     +F    ++     K+ G+ +I 
Sbjct: 1   MKKRLIGLLLAGVTISMSVSA-AEPLKIGFANRTLNGAFFNGLTEYMKIHAKEKGYTLIT 59

Query: 61  -IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
             A  D  K +  ++ + + G    ++   DP+ G  I   A+   +  + +D       
Sbjct: 60  TDARGDLNKQIADVEDMLSQGINYLILNPQDPQAGLRITEIAKRAGVPTVILDSDI---- 115

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
                 +  V     K     G+    +   +      + +           + R    +
Sbjct: 116 ALEAPVITRVQANNAKNNNLIGEYAVGQFGDK----PMNCIFLSGNQGNLVGQARRDNFL 171

Query: 180 DALKAAGFPE-----KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLG 234
             +  A   +              + D  G   A   ++V   + K   +    D   LG
Sbjct: 172 LGVAEAQLRKYNRTNVNFLSQGWGNWDQQGGLKAMEDIIVAQGD-KINCVYSEMDDMALG 230

Query: 235 GVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWV 294
            +RA +    K  ++     +G     E  K        +   +PD+      E++  + 
Sbjct: 231 AIRALKAAN-KLDNVKVYAHDGYKKGLEAVKK--GELQATASNNPDLLTSTVLEVIGQYQ 287

Query: 295 AKDVEPPKFTEVTDVVLITRDNFKEELEK 323
           A     P +  +   +LIT+DN  +  ++
Sbjct: 288 AGQTSFPDYVYI-PSILITKDNVDKYYKE 315


>UniRef50_A9CF36 ABC transporter, substrate binding protein (Sugar) n=4 Tax=cellular
           organisms RepID=A9CF36_AGRT5
          Length = 309

 Score =  121 bits (304), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 59/325 (18%), Positives = 114/325 (35%), Gaps = 19/325 (5%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEV- 58
           M KF    A   L    + +       +G  +   ++ +            K+L G  + 
Sbjct: 1   MKKFIIGAAMSVLLGTAAHAE-----TVGVSMALFDDNFLTVLRNGMLDYSKELKGVTLQ 55

Query: 59  IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
           ++ A  D  K  + I +  AS     ++   D    +A+   A    + ++ V+ Q VN 
Sbjct: 56  VEDAQNDVAKQQSQIQNFIASKVDAIIVNPVDTDATAAMSKLAADAKIPLVYVNRQPVNV 115

Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
              P D    V    T  G  + +E+ + +  +G     +AV+ +       AR RT  +
Sbjct: 116 DSLP-DGQAFVASDETVAGTLEAKEVCRLLGGKG-----NAVIMMGELSNQAARMRTQSA 169

Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238
            D LK        + +  T +       D   + L     ++   ++  ND   +G ++A
Sbjct: 170 KDVLKTDECKGISVVEEQTANWQRTQGSDLVTNWLSS--GIEFNAVIANNDEMAIGAIQA 227

Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
            +  G      +  G++       L+  QA     ++       G  + +     V  D 
Sbjct: 228 LKAAGKDMKSYVVAGVDATQ--DALAAMQAGDLDVTVFQDAAGQGKGALDAALKLVKGDK 285

Query: 299 EPPKFTEVTDVVLITRDNFKEELEK 323
              K        L+T +N K+ + K
Sbjct: 286 IEKKVY--IPFQLVTPENVKDYVAK 308


>UniRef50_UPI0001B51147 putative ABC transporter substrate-binding protein n=1
           Tax=Streptomyces hygroscopicus ATCC 53653
           RepID=UPI0001B51147
          Length = 354

 Score =  121 bits (304), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 54/314 (17%), Positives = 107/314 (34%), Gaps = 24/314 (7%)

Query: 17  MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG--FEVIKIAVPDGEKTLNAID 74
            +     + + +GF   Q +  W     + A +  K+      V      D  + +  I+
Sbjct: 51  AADKKRGKKVTIGFAGPQADHGWLNAINEQAKRRAKEYQDVSLVSTEGSNDTAQQIGQIE 110

Query: 75  SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134
           +L        VI   D K  + +  KA    + V+ +D  F + +         +     
Sbjct: 111 TLINKKVDVLVILPADGKALTQVGLKAMESGIPVVNLDRVFASPQAYRC----WIGGDNY 166

Query: 135 KIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194
            +G   G+ + ++++ +        V     + L+  R+RT G  DALK   +P  +   
Sbjct: 167 GMGLNAGRYIGEQLKGKKNA---KVVELAGLDNLELTRQRTAGFDDALK--NYPNIKKVG 221

Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254
                  +         +L  H       +   +D   +G  RA +  G    D + +G 
Sbjct: 222 RQAAEFTVESGQSKMAQLLQAHSGFD--ALWNHDDDQGVGAERAIQQAGR--DDFLMVGG 277

Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK-------DVEPPKFTEVT 307
            G     +  KA  T    ++L  P      + ++              ++E P    + 
Sbjct: 278 AGAKRAMDAIKADNTVLKATVLYPP-TMAASAIDLARALGQGNGVGGLAELEIPASLTLY 336

Query: 308 DVVLITRDNFKEEL 321
             V +T++N  E L
Sbjct: 337 SAV-VTKENVDEYL 349


>UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostridiales
           RepID=B0G317_9FIRM
          Length = 345

 Score =  121 bits (304), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 103/292 (35%), Gaps = 18/292 (6%)

Query: 27  KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLAASGAKGFV 85
           K+GF     E P+F T      +       E+I K    D +   + I  +   G    +
Sbjct: 62  KIGFSGIDMENPYFLTLESAIKEEVDGKNCELIVKDPKTDPDMQASQIQEMIDEGINAII 121

Query: 86  ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145
           +   D +  +  +   +  D+K++ VD Q              +       G   G++L 
Sbjct: 122 LSPVDWEKITPSLEALKEADVKIVNVDTQVKEMD----YVDAYIGSDNYNAGVLCGEDLI 177

Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205
           K             V  +     ++   R TG  + L  A     +I      S +   +
Sbjct: 178 KRC------PDGGKVAILECPTQNSVNERITGFEETLAKAE-NGFEIVAREDTSGEFQKS 230

Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSK 265
            +AA  +L ++ ++    I+  ND   +G   A      +   I+  G++G   + +  K
Sbjct: 231 LEAAQKILSENSDI--VAIMCGNDQMAVGAKTAMNVA--EQGQILIYGVDGSPDIKKELK 286

Query: 266 AQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317
                  G++  SP   G  ++  + N +       +  E  +V +I ++N 
Sbjct: 287 KTENQIAGTVAQSPISMGKDAANTVLNILNGKDYEKEIKE--NVFMINQENV 336


>UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=bacterium Ellin514 RepID=B9XK02_9BACT
          Length = 330

 Score =  121 bits (304), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 55/322 (17%), Positives = 119/322 (36%), Gaps = 29/322 (9%)

Query: 10  AIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV------ 63
           A+ L+++    A  ++  +  + K     ++Q     A KA ++L  + IK+ +      
Sbjct: 12  ALFLSSICLSCAADKSYTIAVIPKGTTHEYWQCIHAGAIKAQRELQEKGIKVDLIWKGPL 71

Query: 64  --PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121
              D ++ +  +++       G V+   D +   A V  A    + V+  D      K  
Sbjct: 72  REDDRDQQIQVVENFMTRRVSGMVLAPLDNQAMVAPVNNAIRAKIPVVIFDSALKTDK-- 129

Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181
               V  V     K G+   + + + ++ +G     + ++   A    +   R  G MD 
Sbjct: 130 ---YVSFVATDNYKGGQLAAERMGQLLEGKG-----NVILLRYAVGSASTEEREAGFMDT 181

Query: 182 LKAAGFPEKQIYQ-VPTKSNDIPGAFDAANSMLVQ-HPEVKHWLIVGMNDSTVLGGVRAT 239
           LK + FP  ++             A+ A+ ++L +   EV    I    +   +   +A 
Sbjct: 182 LK-SKFPNIKVISSDQHAGATRETAYQASQNLLNRFGHEVNG--IFCPCEPPTVAMAKAL 238

Query: 240 EGQGFKAADIIGIGIN-GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
              G     +  +G + G  +V +L      G    ++ +P   GY     +   +  + 
Sbjct: 239 RDIGKAGGKVKMVGFDAGSQSVIDLKNGDVQGL---VVQNPLRMGYLGVITMVQHLQGEK 295

Query: 299 EPPKFTEVTDVVLITRDNFKEE 320
              +    T V ++T +N ++ 
Sbjct: 296 VEKRID--TGVQIVTPENMEQA 315


>UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHH7_9FIRM
          Length = 330

 Score =  121 bits (302), Expect = 4e-26,   Method: Composition-based stats.
 Identities = 57/303 (18%), Positives = 100/303 (33%), Gaps = 22/303 (7%)

Query: 17  MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGK--DLGFEVIKIAVPDGEKTLNAID 74
               A AE L +G  ++   E +        +   K  D    +I  A    +K  + +D
Sbjct: 37  ADTEAAAEELVIGCTLQNLSEEFMTMLQGAMELQLKNYDNVKLIINDAESQSDKQASQLD 96

Query: 75  SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134
           S  A G    +I   D    ++ V       + VI         +G+       V  +  
Sbjct: 97  SFVAQGVDAVIISPVDADALASAVKTVVDAGIPVITCSADVTGDQGQ-----VWVGSSNE 151

Query: 135 KIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194
             GE + + + +++  +G        +   A +      R  G    LK   +P+ +I  
Sbjct: 152 NGGEIEMKYVAEKLGGKGKIAVLRGPLGAFAEQG-----RFAGYETVLK--DYPDIEIVF 204

Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254
             T +     A     ++L    E+    IV  ND   LG + A +  G K   I   GI
Sbjct: 205 DQTGNWQREEAMALIENLLTAGTELD--AIVCQNDGMALGALEAVKAAG-KKDQITITGI 261

Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314
           + +  V  L   +A     +        G  + +M       +             L+T+
Sbjct: 262 DAI--VDALDSIKAGELDATCFQDAIGQGTNALDMAVKAARGETVERMDIPF---ELVTK 316

Query: 315 DNF 317
           DN 
Sbjct: 317 DNV 319


>UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette transporter, binding
           protein n=2 Tax=Clostridiales RepID=C2L0R0_9FIRM
          Length = 333

 Score =  121 bits (302), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 53/294 (18%), Positives = 110/294 (37%), Gaps = 22/294 (7%)

Query: 27  KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFV 85
            +G  +      ++ +     ++  K+ G+ + ++ A  D  K L  +           V
Sbjct: 60  TIGVSLLNSTHVFYNSIQTAMEEQAKEYGWTLDVQDAAGDANKQLGQVQDFITKKVDAIV 119

Query: 86  ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145
           I   +     +++  A    + V  +D   + + GKP   V  V     K G+   + + 
Sbjct: 120 IAPTNSAGSKSMIELAEKAGIPVFTMD---IASDGKP---VTHVATDNKKGGQLAAEYVV 173

Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205
             +       K+  V  IT +E+++   R TG  D LK    P+ ++  V   S D   A
Sbjct: 174 NNILTE----KKGNVAVITYSEIESCVDRETGFTDYLKENA-PDIKVVDVQNYSGDQQKA 228

Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV-DAVSELS 264
            D   +ML+++  +   ++  + D   +G + +        A    IG +G  + V+E+ 
Sbjct: 229 ADVMQNMLLKNDNID--VVFCVGDPAAIGALSSITAA---NAATKIIGYDGNPEGVAEIK 283

Query: 265 KAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318
           K     +   +   P   G  + E +   +  +    +   +    +I   N K
Sbjct: 284 K--GGNWVADVAQDPAGIGKTTLEAIKKHLEGEKVDSEI--LIAPYIIDAKNAK 333


>UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional regulator n=14
           Tax=Alphaproteobacteria RepID=B2IJW8_BEII9
          Length = 314

 Score =  120 bits (301), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 56/313 (17%), Positives = 109/313 (34%), Gaps = 11/313 (3%)

Query: 11  IGLAAVMSQ--SAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI--AVPDG 66
           I LAAVM+   S  A    +G  +   ++ +           G+ L    +++  A  D 
Sbjct: 4   ILLAAVMAINFSCSAGAESIGVSMSAFDDNFLTVLRNALIAHGQSLPNVNVQMEDAQNDV 63

Query: 67  EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTV 126
            +  + + +  ASG    ++   D     AI   A    + ++ V+ Q  N    P +T 
Sbjct: 64  ARQQSQVQNFIASGVSAIIVNPVDTDATEAISKLAADAKVPLVYVNRQPANVDRLP-ETQ 122

Query: 127 PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAG 186
             +       G  Q QE+ + ++ RG     + V+ +       +R+RT    D +    
Sbjct: 123 AFIASDEAVSGTLQAQEVCRLLKARGKGKSANVVVMMGQLSNQASRQRTKDVHDVIATPE 182

Query: 187 FPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA 246
               ++ +  T +     A +  ++ L     ++   ++   D   +G ++A    G   
Sbjct: 183 CAFMKVVEEQTANWQRTEAMNLMSNWLSA--GIQFDAVIANADEMAIGAIQAMRSAGLPV 240

Query: 247 ADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEV 306
            D I  GI+G     EL +        ++       G  + +               T  
Sbjct: 241 KDYIVAGIDGGRDGIELMRQ--GYLDVTVFQDAAGQGAGALDTALMLARGKKT--DRTIW 296

Query: 307 TDVVLITRDNFKE 319
               LIT  N  +
Sbjct: 297 VPFQLITPTNVAD 309


>UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Nostoc punctiforme PCC 73102 RepID=B2J7A7_NOSP7
          Length = 318

 Score =  119 bits (299), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 56/305 (18%), Positives = 98/305 (32%), Gaps = 19/305 (6%)

Query: 5   TKALAAIGLAAVMSQSAMAENLK--LGFLVKQPEEPWFQTEWKFADKAGKDLGFE---VI 59
             A  AI ++A      + E  K  +GF   +   PW   E     +           +I
Sbjct: 7   FSAYVAIAISAFSLSGCIREKTKKIVGFSQTENIGPWRIAETNSIKEEAAKHKKTYDFLI 66

Query: 60  KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
             A     K    I+ L A       +   + +  +  +  AR   + +  +D +     
Sbjct: 67  TDAQGQTSKQFADIEDLIARQVDVIFLAPREYEGLTPALEAARAAKIPIFLIDREAAGRP 126

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
           G+    V  +       G R G+ L K    +   V+ +            A  R  G  
Sbjct: 127 GEHF--VSFLGSDFIAQGRRVGEWLAKATDGKASIVELTGTAG-----SSVAIDRAKGFR 179

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
           +A+  A +P  +I    T       A     +++          +   ND   LG ++A 
Sbjct: 180 NAI--ATYPNMKIIATQTADFSRAAAVRVMENIIQA-KGSDITAVYAHNDEMALGAIQAL 236

Query: 240 EGQGFKAADIIGIG-INGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
           +  G K    + +G I+G  A  E       G   S+  +P   G      +  + A   
Sbjct: 237 KSAGMKPGKDVMVGSIDGQKAALEAIIRGELGV--SVESNPR-FGPLVFATMEEYFAGKK 293

Query: 299 EPPKF 303
            PP+ 
Sbjct: 294 IPPRI 298


>UniRef50_C0C4T0 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM
           15053 RepID=C0C4T0_9CLOT
          Length = 334

 Score =  119 bits (299), Expect = 9e-26,   Method: Composition-based stats.
 Identities = 59/294 (20%), Positives = 108/294 (36%), Gaps = 17/294 (5%)

Query: 28  LGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVI 86
           +GF+V+     +F +  K  +        EV +     D    ++A+++L        VI
Sbjct: 52  VGFIVQDLTINYFLSVVKGVEDFQDKYDMEVQVIDGHSDAPTQVDAVENLITQEVDCIVI 111

Query: 87  CTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYK 146
           C  D     A V +A+   + VI   ++   A          + +     G   G+   +
Sbjct: 112 CPVDTVAPEAAVKEAQAAGIPVITWSEKIEGADA-------WIAVNNYDYGFENGKIAGQ 164

Query: 147 EMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAF 206
            +       +++ VM +   E +    R  G MD L +   P+ +   V + +    G  
Sbjct: 165 WILDNLDKQEDAKVMYVYVKENEQLIERGEGMMDGLASLA-PDAETVAVQSGNTTESG-M 222

Query: 207 DAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKA 266
           +A  + L +HP++   +IV  NDS  LG   A    G   A +   G +  +   E    
Sbjct: 223 EAVETTLAKHPDLN--VIVCSNDSVALGAYEAMVSAGKSDAKVCITGQDADEKNLEYISQ 280

Query: 267 QATGFYGSLLPSPDVHGYKSSEMLYNWVA-KDVEPPKFTEVTDVVLITRDNFKE 319
             T   G++       G    + +   +    V  P +   T    +T DN K+
Sbjct: 281 D-TILKGTVDIGAYNQGELLCQSVEKVLKEGKVADPIYVSFTP---VTMDNVKD 330


>UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Ruminococcus sp.
           5_1_39BFAA RepID=C6JDF0_9FIRM
          Length = 333

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 57/298 (19%), Positives = 107/298 (35%), Gaps = 20/298 (6%)

Query: 25  NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLAASGAKG 83
           +L +GF       PW     +   ++  + G   I   A  D    +  I+ + A     
Sbjct: 49  DLTVGFAQSGNPNPWMVALTESMQQSADEYGVNYIYTDANDDMATHVANIEDMLAKDLDI 108

Query: 84  FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143
            VI   +     A++ +A    + VI         +G+ + TV             +G+ 
Sbjct: 109 LVIAPMEDTGLEAVLDEAAEKGVPVILSAR---TTQGEYVTTV-------YSDQAWEGER 158

Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203
             + + ++  D K   +  I      +   R  G  D + A  +P+ +I    T +    
Sbjct: 159 CAELIGEKIPDAKVVELRGIEGT--SSVAGREKGFRDVM-AEQYPDMEIVVEQTANFSRQ 215

Query: 204 GAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF-KAADIIGIGINGVDAVSE 262
            A DA  ++L          +   ND   LG V+A +  G     DI  +GI+G      
Sbjct: 216 EAMDAMANILQAKGPDAIDAVYCHNDEMALGAVQAIKDAGLTPGEDIQVVGIDGQK--EA 273

Query: 263 LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320
               ++    G++  SP  HG    E++   +  +    +   +    +IT++N  E 
Sbjct: 274 WELVKSGEMLGTVQCSPK-HGPTVFEVIQKILDGETVQKE--TIVPDQVITKENVDES 328


>UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter n=1 Tax=Yersinia
           kristensenii ATCC 33638 RepID=C4U114_YERKR
          Length = 322

 Score =  119 bits (299), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 63/322 (19%), Positives = 110/322 (34%), Gaps = 24/322 (7%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI- 59
           M     AL+    +A  +       + +         P F    +  +   K LG   I 
Sbjct: 8   MTTLAIALSTFAFSANAAPKGKDAPVTILVSALSYSFPHFVFLQEQLEAEAKTLGNVKII 67

Query: 60  -KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
                    K +  I++    G  G +I   D    + ++  A    + V+ +D      
Sbjct: 68  RSDGQLSAPKQIADIEAAIVQGVDGIIIAPADATALAPVLRTAIKEGISVVTIDRPV--- 124

Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
            G P + +  V        +RQG+ + K   +    +    +         TA  R+ G 
Sbjct: 125 NGVP-EVIANVAADNLIGAQRQGEAVEKLFPQGATIINLQGI-----PGDKTANDRSKGV 178

Query: 179 MDALKAAGFPEK-QIYQVPTKSNDIPGAFDAANSMLV--QHPEVKHWLIVGMNDSTVLGG 235
            D L     PE  +     T   +         ++L    +P     +IV  ND + LG 
Sbjct: 179 HDTLDK--HPELYKFVAEQTARFNRDQGLSVTENLLTGLANP---PTVIVAGNDDSALGA 233

Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATG-FYGSLLPSPDVHGYKSSEMLYNWV 294
            +A E +G K      I I G D  ++  KA   G   G++   P   G ++ ++L +++
Sbjct: 234 AQAVEARGLKGK----IAIFGYDGSTDALKAVRDGVLTGTVDQYPGKQGREAVKILTDYI 289

Query: 295 AKDVEPPKFTEVTDVVLITRDN 316
                P     +   V IT  N
Sbjct: 290 RTGARPATVDVLVSPVAITSKN 311


>UniRef50_B9L479 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Thermomicrobium roseum DSM 5159 RepID=B9L479_THERP
          Length = 357

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 53/302 (17%), Positives = 107/302 (35%), Gaps = 23/302 (7%)

Query: 19  QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA--VPDGEKTLNAIDSL 76
             A    + +  + K    P+F+   K  ++  K+LG     +A    D    +  I+ L
Sbjct: 69  TVAPGTKITIAMVPK-LVHPFFEDCRKGGEQKAKELGVTFEYVAPQQADPALQVKIIEDL 127

Query: 77  AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136
                    I   +PK    ++A+     + ++  D    N++      V  +       
Sbjct: 128 IRKKVHAISISPNEPKSVEPVIAEGMKQGILMMTFDADSPNSQ-----RVMYIGTDNKAA 182

Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196
           G+  G+ + K +  RG     +  +           +R  G  + +     P  Q+  V 
Sbjct: 183 GKTMGETMAKLLNGRGKVGIITGGLGALN-----LNQRIEGFKEGV----GPNIQVVDVQ 233

Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV-RATEGQGFKAADIIGIGIN 255
              +D+      + +ML  HP++     V       L  V ++ E Q      +I     
Sbjct: 234 ATDDDLQKGLSVSEAMLRAHPDLNGIACVSATGGPTLAQVLKSPEFQDRIGKLVIV---- 289

Query: 256 GVDAVSELSKAQATGF-YGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314
             D + E  +A   G    +++  P   G  + +  Y+ +    +PP     T V ++T+
Sbjct: 290 AFDDLEETKRAIQEGIIAATMVQRPVQMGVLTVQWAYDILTGKAKPPFKNIDTGVTVVTK 349

Query: 315 DN 316
           +N
Sbjct: 350 EN 351


>UniRef50_C0CHG6 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica
           DSM 10507 RepID=C0CHG6_9FIRM
          Length = 331

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 106/308 (34%), Gaps = 24/308 (7%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSL 76
           S  A + + K GF+V   E  ++QT     +   K+LG E I   A  D     N +  L
Sbjct: 44  SADAGSGSHKCGFVVGSFEHVFYQTIRDGIESKAKELGMEAIVTDAELDPNIATNKVQDL 103

Query: 77  AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136
            A G +   +   D       +  A    + +   D    +   + ++    V     K 
Sbjct: 104 TAQGCEAIALSCNDAAGVKPAIENADAEGVAMFTFD---CSTDSEAINC--FVGTDNYKG 158

Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196
           G+  GQEL K             V  I      +   R  G++D LK     ++ +    
Sbjct: 159 GQLGGQELLKY------SEDGDTVGIICYPTASSCLDRQNGALDVLKDE---DRTVVYDN 209

Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256
               D   A +   +ML  +P++    +  + D    G + A +  G   +D   IG +G
Sbjct: 210 DYQGDANKAQEIMENMLTANPDM--AAVFCVGDPAATGALAAIKAAG---SDCKIIGFDG 264

Query: 257 VDAVSELSK---AQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLIT 313
                E           +   +  +P + G    E +  ++ +         + D  +I 
Sbjct: 265 NPEAKEAISDTEGNGKWWVSEIAQNPTLIGETIVEQMQKYLDEGKVDAAEIPI-DPYVID 323

Query: 314 RDNFKEEL 321
             N  +E+
Sbjct: 324 ASNVADEM 331


>UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-binding protein n=4
           Tax=Pseudomonas RepID=Q883G4_PSESM
          Length = 310

 Score =  119 bits (298), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 52/306 (16%), Positives = 98/306 (32%), Gaps = 20/306 (6%)

Query: 19  QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP-DGEKTLNAIDSLA 77
            S  A+ L +G  V   +  +F    +  +  GK  G ++I +    +    ++ I+ L 
Sbjct: 22  GSTWAKELTIGLAVANLQADFFNQIKQSVEAEGKARGVKIITVDAQGNSSTQVSQIEDLI 81

Query: 78  ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137
                  +            V  A+   + VIAVD    +A G        V        
Sbjct: 82  TRQIDALIYIPAGATAAGVPVKAAKAAGIPVIAVDRNAPDAPGDTFIASDSV-------- 133

Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT 197
              G +   E   +  D K    +            R  G  + LK  GFP  ++     
Sbjct: 134 --AGAKALAEYVGKVTDGKGRIAILQGQLGTTPENDRAKGFQEGLK--GFPGLKVVAEQP 189

Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV 257
                   F  A  +L + P +   +  G  D+  LG  +A +        ++      V
Sbjct: 190 AEWAQDKGFAVAQDLLQRDPNIT--VFFGRADAMALGAAQAVKVANLSQPVVVVGFDGDV 247

Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317
             +  ++         ++       G  +     +  A    P +  ++ + VL T+DN 
Sbjct: 248 AGLKAVASGV---LQATMTQQTQKMGRMAVASALDLKAGKAVPKE--QLLETVLTTKDNV 302

Query: 318 KEELEK 323
              L++
Sbjct: 303 APFLQQ 308


>UniRef50_Q7NV24 Probable ribose ABC transporter, substrate binding protein n=1
           Tax=Chromobacterium violaceum RepID=Q7NV24_CHRVO
          Length = 330

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 63/310 (20%), Positives = 111/310 (35%), Gaps = 20/310 (6%)

Query: 11  IGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKT 69
           IGL  + +  A     ++ ++  + + P++ T  K      +  G+      +    E  
Sbjct: 25  IGLVPLPALPA-----EIAYITAKADLPFWDTVGKGVKAVAEANGYAFSELDSKLSAEMQ 79

Query: 70  LNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLV 129
           LN +         G VI   + K     +  AR   + V        +      D V  V
Sbjct: 80  LNNVRQAIDRRVAGIVISPTNSKSAEEALILARRAKIPV-----AIADIGASGGDYVSFV 134

Query: 130 MMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPE 189
                +     G EL K M+ + W      ++ I  +     + RT G  DA+K AGFP 
Sbjct: 135 KSDNYRGAYDVGTELAKAMKAQNWASGAYGMVTIELSR-KNGQDRTNGFRDAMKDAGFPR 193

Query: 190 KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADI 249
            +I     K       +     ML  HP ++ + I    D  V G +RA    G K   +
Sbjct: 194 -EIVLRQMKDYSAEETYRYVKEMLAAHPGLRGFFI--ETDQPVAGALRAIREAG-KEKQL 249

Query: 250 IGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDV 309
           + +  + +  V  L K  +       +  P + G  ++  L + +     PP    +  V
Sbjct: 250 LLVSFDAMPDVVRLLK--SGALVAVGMQQPYLMGSSAAGALVSRLRGH--PPAKEILVPV 305

Query: 310 VLITRDNFKE 319
           ++ T  N  +
Sbjct: 306 LVATGRNVDQ 315


>UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothece sp. ATCC 51142
           RepID=B1WQL3_CYAA5
          Length = 380

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/310 (16%), Positives = 114/310 (36%), Gaps = 27/310 (8%)

Query: 28  LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-------IAVPDGEKTLNAIDSLAASG 80
           + +L K   +P++Q   +      ++LG + +          + D +K ++ I  L  + 
Sbjct: 80  IAYLFKTRSDPFWQQMEQGVQTVAQELGIKTLVKFTEEKPNTLGDVKKQISTILELIDNN 139

Query: 81  -AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139
              G VI   D      I+ KA    +KVI +D      +      +  V     + G+ 
Sbjct: 140 DLDGLVIAPEDSIQLVPIIEKATQQGIKVIVIDTPIDTDQ-----ILTFVTFDNFEGGQI 194

Query: 140 QGQELYKEMQKRGWDVKESAVMAITANE-LDTARRRTTGSMDALKAAGFPE-KQIYQVPT 197
            G+ + +++ +      +  ++ +  +   +    R  G ++ LK A      +I  + +
Sbjct: 195 LGEWVIQKLTQSSRRNNKINILILEGSLHEENTIERRQGFLEGLKRANKNYSLEILDLKS 254

Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV 257
              +   A     + L + P +   +I+  +D   +G   A +        II  G +G 
Sbjct: 255 ADWETKKAKMITQAWLEKFPTID--VIMAADDQMAVGASEAVQEANKSG--IIITGFDGT 310

Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVT------DVVL 311
                  K        ++   P       ++++ N + K+       ++       + +L
Sbjct: 311 PYGLNAIK--TGQIDATINQLPRTQISLITQLMINSLEKEQTTLPLCQLIGQEQTENSLL 368

Query: 312 ITRDNFKEEL 321
           IT+DN  E L
Sbjct: 369 ITQDNINEAL 378


>UniRef50_A8RJP3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8RJP3_9CLOT
          Length = 359

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/289 (16%), Positives = 97/289 (33%), Gaps = 14/289 (4%)

Query: 12  GLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTL 70
             A     +     ++  ++ +    P+F   +        +LG +  I  +  D    +
Sbjct: 65  TAATSGGDNKADSGMEFVYVTQDSANPYFIQVYDGFQSKCAELGIKTQILDSKYDVATQV 124

Query: 71  NAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVM 130
           + ++        G +I   D      +V +A+   + V A      NA+         + 
Sbjct: 125 SYVEDAVQRDVDGIMISPLDENALKTVVDQAKEKGIVVSAEAQPVSNAQIDGSLDEYNIG 184

Query: 131 MAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEK 190
                IG    + +  E   +G        + +  ++++   RR  G  D +     PE 
Sbjct: 185 ---YAIGNAAAEWIKAEQGGKG------RALILAQDDVEAVIRRGDGINDGILENA-PEA 234

Query: 191 QIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADII 250
           ++      SN          S+L+  PEV   +I   +D T +G   A         +  
Sbjct: 235 EVVARQNASNT-DLGMKVTESVLLAKPEVN--VICACDDFTAIGAYEAVSAMQKIPDNFY 291

Query: 251 GIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
             G +  D   E  K + + +  S    P   G   +E +Y ++ +  E
Sbjct: 292 IGGCDATDEGKEKMKVENSVYRSSCNLFPYEAGEDLAEAMYKYLTEKQE 340


>UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gammaproteobacteria
           RepID=B0URZ9_HAES2
          Length = 311

 Score =  119 bits (297), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 57/308 (18%), Positives = 110/308 (35%), Gaps = 19/308 (6%)

Query: 3   KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA 62
           K  K+  AI           AE      ++K    P++    +  +   K LG +V   A
Sbjct: 5   KTLKSCLAILGLVCSVSVYSAE---YAVILKTLSNPFWVAMKEGIENEAKALGVDVDIFA 61

Query: 63  VP---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD--QFVN 117
            P   D +  L   + L     KG       P       AKA    + ++ +D+     N
Sbjct: 62  SPSEGDYQSQLQLFEDLINKNYKGIAFAPLSPANLVMPAAKAYRKGIYLVNLDEKIDIKN 121

Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177
            +    +    +      +G +  Q +  ++   G    E A++   A       RR  G
Sbjct: 122 LQKAKGNVEAFITTDNVAVGGKAAQFIVDKLGSEGG---EVAIIEGKAGNASGEARR-RG 177

Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237
           + +    +     ++        D   A D A ++L ++P +K + +   ND+  +G  +
Sbjct: 178 AREVFVKSS--SIKLVASQPADWDRIKALDVATNVLSRNPNLKAFYV--ANDTMAMGVAQ 233

Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
           A    G K   I+ +G +GV    ++   +      ++   P + G K  ++L +     
Sbjct: 234 AVINAG-KQGKILVVGTDGVPEARKMVSERK--LTATIAQDPAMIGAKGLKLLVDAARAG 290

Query: 298 VEPPKFTE 305
            + P   E
Sbjct: 291 KQIPVDVE 298


>UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasmic component) n=2
           Tax=Firmicutes RepID=Q97J33_CLOAB
          Length = 325

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 48/291 (16%), Positives = 97/291 (33%), Gaps = 21/291 (7%)

Query: 27  KLGFLVKQPEEPWFQTEWKFADKAGKDLG-FEVIKIAVPDGEKTLNAIDSLAASGAKGFV 85
           K G         +++          +  G   V + A  D  K +  I        K   
Sbjct: 45  KFGATYMTTNNRFYEIINDEIRSVVESNGDILVTRDAALDKNKQMQQIYEFIKLKVKAIF 104

Query: 86  ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145
           I   D K     +  A+   + VI VD    + K         V+      G +  + L 
Sbjct: 105 INPVDWKQIKPALIAAKNAGIPVIVVDTPVYDDKLVACT----VISDNYDAGVQCAKYLM 160

Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205
           K   K         +M I  ++  +   R  G +D + A+   + +I         +   
Sbjct: 161 KSKSKAN-------IMLIEHSKAKSGIDRIKGFVDTIGAS--KQYKIVAAGDSEGQLDKT 211

Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSK 265
               + ++ +H  V    I+ +ND + LG + A +  G     ++  G++G       + 
Sbjct: 212 MSLVDDLIKKHTNVD--AIMALNDPSALGALAALKENGL-LGKVMVFGVDGS--PEAKTM 266

Query: 266 AQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316
                   +    P+  G+ ++E  Y+ +           +  + LI+++N
Sbjct: 267 IHDGFMTATSAQFPNKIGHIAAEKAYDILKGKRLKRDV--IVPISLISKEN 315


>UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostridium
           acetobutylicum RepID=Q97JD5_CLOAB
          Length = 319

 Score =  118 bits (296), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 52/307 (16%), Positives = 105/307 (34%), Gaps = 21/307 (6%)

Query: 22  MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE--VIKIAVPDGEKTLNAIDSLAAS 79
            ++  ++G  +   ++ +        +   K+L     V+  A  D  +  + I +L A 
Sbjct: 30  KSKKYRIGLSIPASDDVFRNKIINAMENEAKNLPDTDLVVVNAKGDPARQKSQISNLVAQ 89

Query: 80  GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139
                ++   D  L S     A    + +I+V++   N      D    V   +   G  
Sbjct: 90  KCNAILVLPVDTLLSSDYTQIANDSGIPIISVNNFLKNQD----DAAAYVGSDSITSGIM 145

Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199
           + +   K++  +G     + V+       +TA +RT G    L+   +PE +I       
Sbjct: 146 EAEYAVKQLNGKG-----NVVILKGEPNHETAIKRTEGFKQVLQ--NYPEIKIIDEQYGD 198

Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259
                      + +      K   I+  ND   +G + A +        I  + + G+DA
Sbjct: 199 WKRTLGMQITENWIK--NGTKFDAILANNDEMAIGAIMALKENNL----INNVFVGGIDA 252

Query: 260 VSELSKAQATG-FYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK-FTEVTDVVLITRDNF 317
             +  K    G    ++  +    G ++ +  Y  V  +    K F     VV    D +
Sbjct: 253 TPDALKLLKEGSLKVTVFQNAAGQGSEAIKAAYKLVKGEKINKKIFVPYELVVPNDADKY 312

Query: 318 KEELEKK 324
             +   K
Sbjct: 313 LGKQSAK 319


>UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Bacillus cellulosilyticus DSM 2522
           RepID=D2LSY2_BACS4
          Length = 314

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/328 (15%), Positives = 106/328 (32%), Gaps = 27/328 (8%)

Query: 1   MHKFTKALAA--IGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE- 57
           M K    L A  + +      ++      LG  +      W     + A+   K L  + 
Sbjct: 1   MKKVLFLLVASILLIVGCSEDTSGDGETVLGLAMPSATHGWMGALIQNAEDQAKALVEDG 60

Query: 58  ----VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD 113
                I     +    +N ++ L A G    V+   +    S I  +     + ++ VD 
Sbjct: 61  TIDDYIFTTADNPSAQVNNVEDLIAQGVDAIVMLPIESDALSPIALQVEEAGIPLVIVDR 120

Query: 114 QFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 173
           +  N     +     V       G   G+   +++   G       V+ I        ++
Sbjct: 121 ELTNDAATVV-----VKGDNYGAGVNAGEYFMEQLGGNGK------VVEIAGPSNSVTQQ 169

Query: 174 RTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVL 233
           R+ G  +A++ +   + +I    +       +     ++L   PE+    +   +D   L
Sbjct: 170 RSDGFREAIEGS---DIEIVASQSGEFSTETSLQVMENILTSQPEID--AVYTQDDGMAL 224

Query: 234 GGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNW 293
           G ++A              G+ G   V E+          + L SP +   +   +  + 
Sbjct: 225 GVLQAINEANRT-DIQFITGVAGSKDVYEIIMDDG-LITATFLYSP-LMVKEGVIIGAD- 280

Query: 294 VAKDVEPPKFTEVTDVVLITRDNFKEEL 321
           +A   +P     V     +T+DN  +  
Sbjct: 281 LANGEDPDSAEVVVPATPVTKDNVDDHY 308


>UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Chthoniobacter flavus Ellin428 RepID=B4CUB2_9BACT
          Length = 327

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 97/318 (30%), Gaps = 25/318 (7%)

Query: 8   LAAIGLAAVMSQSA-----MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA 62
            + I L     + A      A +       +    P+F        +   + G  ++ + 
Sbjct: 26  CSLIVLVGCEKKPAPDTAGAAGSRFFAVSFQTLNNPFFVDLNDGLKQVIDEHGDRLVTLD 85

Query: 63  VP-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121
                 K  N +  +         +   + +   A +  AR   + VI VD    +A   
Sbjct: 86  AQFSSLKQKNDLSDVIEQKPAAIFLNPVNWESVRATLIAARNAKIPVIVVDAPVPDAD-- 143

Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181
               +  V       G    Q L       G    ++ V  +  +       R  G  D 
Sbjct: 144 --LVLAQVASDNVAAGRLAAQAL-------GDARPQAKVAILQYSVNKACVDRVAGFTDV 194

Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241
           L A  FP   I                   +L + P++    +  +ND   +G V A + 
Sbjct: 195 L-AKSFPGATIIARQDVKGTSEATRPVMRDLLGRFPDLD--AVFPINDPGAIGCVSAIDA 251

Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301
            G     ++ + ++G    ++       G + +    P   G  ++   Y+ +A    P 
Sbjct: 252 AGRS-GKVLVVTVDGSREAAQFI--LNGGIHSTSAQFPKKIGSLAAGAAYDHLAGK--PV 306

Query: 302 KFTEVTDVVLITRDNFKE 319
                  V L+T+ N  E
Sbjct: 307 DKEIKVPVTLVTKANAAE 324


>UniRef50_B0PGZ6 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis
           DSM 17241 RepID=B0PGZ6_9FIRM
          Length = 374

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 52/311 (16%), Positives = 116/311 (37%), Gaps = 21/311 (6%)

Query: 19  QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDG-EKTLNAIDSLA 77
            +  A+ +  G ++      +F    +  +KA +D G EVI  +     +  ++ I++  
Sbjct: 53  PAGGADKIVCGVVLIDMTNQFFVDMIEGGNKAAEDYGCEVIWKSADGNFDNQISLIENFI 112

Query: 78  ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137
             G    ++   D +    ++ KA    +  I +  Q        ++T    +    +  
Sbjct: 113 EQGVDCILVDPLDSEGLKPVIEKASAAGIPTITMAGQV------DVETNYTTVYNDEENT 166

Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT 197
               +   K + + G        +         +  R  G    ++   +P   + + PT
Sbjct: 167 RIIAEMTAKMIGEEGKTA-----LLYGNKGNLVSDLRQKGYYAGMEK--YPNITVVEQPT 219

Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV 257
            + D P    AA  ++  +P++K   I  ++D+  L   +A +  G K  +II    +G 
Sbjct: 220 -NWDPPTGMKAAQDLIAANPDLK--AIHCISDAVTLAAYQAVKTAG-KEGEIIVTSYDGN 275

Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317
           D    L   ++  F  ++L      GY + ++     +      K   +    ++T +N 
Sbjct: 276 D--DALKAVESGQFTSTVLTGAKKTGYWNIQVALQLASGVRPAEKILNLDTHFVMTDEN- 332

Query: 318 KEELEKKGLGG 328
           K +  + G+ G
Sbjct: 333 KAKFAEMGIEG 343


>UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-binding protein n=82
           Tax=Proteobacteria RepID=A3N967_BURP6
          Length = 320

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 57/305 (18%), Positives = 113/305 (37%), Gaps = 21/305 (6%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV-----PDGEKTLNA 72
           +++  A   K+  ++K     +F T    A +  K    +   +        D    +  
Sbjct: 28  ARAETAHKPKVALVMKSLANEFFLTMENGAKEYQKHNASQFDLVTNGIKDETDTASQIRI 87

Query: 73  IDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV-NAKGKPMDTVPLVMM 131
           ++ +  S     V+   D K    +V KA    + V+ +D++   +        VP V  
Sbjct: 88  VEQMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIVVNIDNRLDPDVLKSKGLNVPFVGP 147

Query: 132 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ 191
              K     G  L K ++       ++  +         A++RT G  DA+KAAG    +
Sbjct: 148 DNRKGARMVGDYLAKRLK-----AGDAVGIVEGVPTTTNAQQRTAGFQDAMKAAG---AK 199

Query: 192 IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 251
           +  V +   +I      A +ML ++P +K   ++  ND+  +G V A    G     +  
Sbjct: 200 VVSVQSGEWEIDKGNAVAAAMLNEYPNLK--ALLCGNDNMAIGAVSAVRAAGR-QGKVYV 256

Query: 252 IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEV--TDV 309
           +G + ++A+  + K        +             +     +A+  +    T V  T V
Sbjct: 257 VGYDNINAIKPMLKD--GRVLATADQYAAKQAVFGIDTALKALAEHRKQADMTGVVATPV 314

Query: 310 VLITR 314
            L+T+
Sbjct: 315 DLVTK 319


>UniRef50_B8ZUE5 Putative D-ribose-binding protein n=2 Tax=Mycobacterium leprae
           RepID=B8ZUE5_MYCLB
          Length = 345

 Score =  118 bits (295), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 59/298 (19%), Positives = 103/298 (34%), Gaps = 18/298 (6%)

Query: 25  NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI-AVPDGEKTLNAIDSLAASGAKG 83
            L +G        P++    +F D+    LG  +  + A  D +K L+ +++L   G  G
Sbjct: 36  KLTIGVSYPTANSPFWNAYTRFIDEGSHQLGVYINAVSAEEDEQKQLSDVETLINQGIDG 95

Query: 84  FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG--KPMDTVPLVMMAATKIGERQG 141
            ++      +   ++  A   ++ V+ VD     A G  K  D V  +     K G    
Sbjct: 96  LIVTPQSTSIAPTLLRIATQANIPVVVVDRYPGYAPGQNKNADYVAFLGPNNEKAGSGIA 155

Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201
           +     M   G       +          A+ R  G   AL A G    ++ Q     + 
Sbjct: 156 E---ALMAGGGSKF----LALGGMPGNSVAQGRKAGLESALTAVGH---RLVQFQYAGDS 205

Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261
                 AA +ML  HP      I   ND    G ++A      +   I      G+D   
Sbjct: 206 EDKGLAAAENMLQAHPAGDANAIWCFNDKLCQGAIKAVYNANREKEFI----FGGMDLTP 261

Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
           +   A   G Y   L +  + G     +LY  +    +P +     D++ + + N  +
Sbjct: 262 QAIAAIENGLYTVSLGAHWLEGGFGLAILYRKIHGQ-DPAERMVKLDLLKVDKSNVAK 318


>UniRef50_B1Y299 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Leptothrix cholodnii SP-6 RepID=B1Y299_LEPCP
          Length = 318

 Score =  118 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 64/329 (19%), Positives = 117/329 (35%), Gaps = 22/329 (6%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAEN-LKLGFLVKQPEEPWFQTEWKFADKAGKDLG-FEV 58
           M K+   L A  +      +  A+N L + F+ K  ++ ++       ++A ++ G  ++
Sbjct: 1   MKKYLTFLFACWVLLSSGSAWPADNKLNIVFIPKSSDQMFWDLMRNGVERAMQEEGQIDL 60

Query: 59  IKIA---VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQF 115
                    D +  +  +     +G    VI   D       V +A    +KV+ VD   
Sbjct: 61  TWRGPAYNDDTDSQIRILQYYTRAGVDAIVITPTDRSRLVGPVEQAVRMGIKVVVVDSAL 120

Query: 116 VNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRT 175
            +  G     +  V       G+   ++L + M +RG       V+  T     +   R 
Sbjct: 121 -DGSGH----LQFVTTDNHASGQLAARQLAELMGQRG-----RVVLLRTVAGSASTDDRA 170

Query: 176 TGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG 235
            G +D L A   P   I            A  +A+++L +  +     I  +N+S   G 
Sbjct: 171 RGFIDYLSANA-PAISIVADVYGGGSAGKARHSASALLAKSADFD--AIFAVNESATDGM 227

Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295
           +RA    G        IG +    +  L   +     G ++  PD  GY + + +   + 
Sbjct: 228 LRALREAGLAGRKRF-IGFDSTPFL--LEGLEKKEIDGLIVQDPDRMGYLAIKAVVAALR 284

Query: 296 KDVEPPKFTEVTDVVLITRDNFKEELEKK 324
                      T   L+TR NF+    KK
Sbjct: 285 NRPIKESVIH-TGTTLVTRANFRRPEIKK 312


>UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacteria
           RepID=B2T1S7_BURPP
          Length = 339

 Score =  118 bits (294), Expect = 4e-25,   Method: Composition-based stats.
 Identities = 56/305 (18%), Positives = 104/305 (34%), Gaps = 17/305 (5%)

Query: 21  AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDSLAAS 79
           A    LK+GF   +   PW   E K         G++ V+  A     K ++ I ++ A 
Sbjct: 46  ASKTPLKVGFAQTESNNPWRLAETKSFKDIAAKCGWQLVMTDANSSNSKQVSDIQNMIAQ 105

Query: 80  GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDT-VPLVMMAATKIGE 138
                V    + K  + +V +A+   + VI VD     +  K     +  +       G 
Sbjct: 106 HVDLLVFPPREEKPLAPVVLQAKKAGIPVILVDRDVDQSVAKAGRDYITFIGSDFIDQGH 165

Query: 139 RQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTK 198
           R    L K    +   ++              A  R  G  + +     P   I    + 
Sbjct: 166 RAADWLVKATGGKAKIIELEGT-----TGASAANDRKKGFDEIIAKN--PGMTIIASQSG 218

Query: 199 SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF-KAADIIGIGINGV 257
                       ++L  HP+V    +   ND   LG + A +  G     DI  + I+G 
Sbjct: 219 DFARDKGRQVMETLLQAHPDVT--AVYAHNDEMALGAIAAIKAAGKQPGKDIQIVTIDGT 276

Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317
               +     A G  G+ + S    G  + ++   +   +   P + +V+D     + N 
Sbjct: 277 KGGMDAI---AAGELGASVQSSPFFGPLACDVAQRYAKGEKI-PTWVKVSDKFY-DKSNV 331

Query: 318 KEELE 322
           ++ ++
Sbjct: 332 QQNMQ 336


>UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional regulator n=3
           Tax=Bacteria RepID=D1ANT2_SEBTE
          Length = 330

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 56/289 (19%), Positives = 114/289 (39%), Gaps = 17/289 (5%)

Query: 28  LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---PDGEKTLNAIDSLAASGAKGF 84
           +  ++K    P++    +  +K     G +V  IA     D ++ L  I++L + G K  
Sbjct: 47  IAIVLKTLSNPFWVEMKEGIEKEAAAQGIKVDIIAASSEEDVQEQLRLIENLLSKGYKAI 106

Query: 85  VICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPM--DTVPLVMMAATKIGERQGQ 142
            I    P      + +A    + V+ +D++    + K      +  V     K+G +  +
Sbjct: 107 GIAPLSPVNTIPAIVEANKKGIYVVNIDEKVDMEQLKKSGGSVLAFVTTDNVKVGAKGAE 166

Query: 143 ELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDI 202
            +  ++ + G    E A++   +       RR  G+ +A KA    + ++        D 
Sbjct: 167 YIIGKLPEGG----EVAIIEGKSGNASGEFRR-QGATEAFKADS--KFKLVASQPADWDR 219

Query: 203 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSE 262
             A D A +++ ++P +K   I   ND+  LG V+A    G K   I+ +G +G  A   
Sbjct: 220 SKALDVAANLIQKYPNLK--AIYACNDTMALGAVQAVANAG-KTGQILVVGTDG--APEA 274

Query: 263 LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311
            +         ++   P + G  S ++L   +    +     E  +V +
Sbjct: 275 RTSIDEGKLNATVAQDPAMIGATSLKILIEAIKDKPQISPDIEAKEVPV 323


>UniRef50_A9HFZ1 D-ribose-binding protein n=1 Tax=Gluconacetobacter diazotrophicus
           PAl 5 RepID=A9HFZ1_GLUDA
          Length = 330

 Score =  117 bits (293), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 56/306 (18%), Positives = 98/306 (32%), Gaps = 26/306 (8%)

Query: 17  MSQSAMAEN--LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP---DGEKTLN 71
            + +A AE+   K+G  V     P+F    +   +  K LG      +V    D  K  +
Sbjct: 32  STAAARAEDSVHKIGVTVGSLGNPFFIAAIRGITQQAKALGPTAPVQSVSADYDIGKQAS 91

Query: 72  AIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMM 131
            +DS  A+G    +    D +  + +V +       V+A D     A          +  
Sbjct: 92  QVDSFIAAGNDLVMFNAVDYQAAAPLVRRLHDSGATVVAFDVGAPGADAT-------ITT 144

Query: 132 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ 191
              K GE   Q +   +   G       V+ +    +     R  G       A  P  +
Sbjct: 145 NNVKAGEISCQYIVDRLHGHG------DVVIVNGPPVTALSDRVKGCQSVFAKA--PGIR 196

Query: 192 IYQV-PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADII 250
           +            G      S++V+  +V    I  +ND T LG   A    G    D  
Sbjct: 197 LLSSTLDAKGSRDGGLAVGQSVMVRFDKVD--AIFAVNDPTALGVELAARQAGRH--DFF 252

Query: 251 GIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVV 310
              ++G   V +  +   T    +    P      ++ + ++ +      P    +    
Sbjct: 253 LASVDGSPDVEQEMRGGNTLIAATASQDPFAIATTATRIGFD-IRAGRIKPGIVRLLAPS 311

Query: 311 LITRDN 316
           LIT D 
Sbjct: 312 LITHDT 317


>UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional regulator n=5
           Tax=Bacteria RepID=A1TPE5_ACIAC
          Length = 322

 Score =  117 bits (292), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 103/313 (32%), Gaps = 18/313 (5%)

Query: 1   MHKFTKALAAIGLA------AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL 54
           M K T+   A  LA       + + +   + + LGF     E  W     +    A +D 
Sbjct: 1   MTKLTRRTLATALACAPVAALLPAAAWAQKPIVLGFSQVGAESEWRTANTESIKSAARDA 60

Query: 55  GFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD 113
           G E+    A    E  + AI S  A                  ++ +A+   + V+  D 
Sbjct: 61  GIELKFSDAQQKQENQIKAIRSFIAQRVDVIAFSPVVESGWEPVLREAKAAKIPVVLTDR 120

Query: 114 QFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 173
                       V  +     + G + G+ L ++M+    DV    +          A  
Sbjct: 121 AVNTKD--TSLYVTFMGSDFVEEGRKAGRWLVEKMKDAKGDVNIVELQGTVG--SAPAID 176

Query: 174 RTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVL 233
           R  G  + +KA   P+ +I +  T         +   + L      K  ++   ND   +
Sbjct: 177 RKKGFEEVVKAD--PKFKIIRSQTGDFTRAKGKEVMEAFLKAE-GRKINVLYAHNDDMAI 233

Query: 234 GGVRATEGQGFK-AADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYN 292
           G ++A E  G K   DI  I I+ V          A     ++  SP + G +    + +
Sbjct: 234 GAIQAIEEAGLKPGKDITIISIDAVKGA--FEAMMAGKLNVTVECSP-LLGPQLMAAVKD 290

Query: 293 WVAKDVEPPKFTE 305
             A    P +   
Sbjct: 291 IKAGKTVPKRIVT 303


>UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Bacteria
           RepID=ALSB_ECOLI
          Length = 311

 Score =  116 bits (291), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 57/323 (17%), Positives = 119/323 (36%), Gaps = 21/323 (6%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           M+K+ K  +   L  +M  ++     +   ++K    P++    K  +   K LG  V  
Sbjct: 1   MNKYLKYFSG-TLVGLMLSTSAFAAAEYAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDI 59

Query: 61  IAVP---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV- 116
            A P   D +  L   + L+    KG              VA+A    + ++ +D++   
Sbjct: 60  FASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDM 119

Query: 117 -NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRT 175
            N K    +    V      +G +    +  ++   G +V     +        +   R 
Sbjct: 120 DNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVA----IIEGKAGNASGEARR 175

Query: 176 TGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG 235
            G+ +A K A   + ++        D   A D A ++L ++P +K   I   ND+  +G 
Sbjct: 176 NGATEAFKKAS--QIKLVASQPADWDRIKALDVATNVLQRNPNIK--AIYCANDTMAMGV 231

Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295
            +A    G K   ++ +G +G+         +A     ++  +P   G    +++ +   
Sbjct: 232 AQAVANAG-KTGKVLVVGTDGI--PEARKMVEAGQMTATVAQNPADIGATGLKLMVDAEK 288

Query: 296 KDVEPP----KFTEVTDVVLITR 314
                P       ++ D +L+T+
Sbjct: 289 SGKVIPLDKAPEFKLVDSILVTQ 311


>UniRef50_A0QZW4 D-ribose-binding periplasmic protein RbsB n=1 Tax=Mycobacterium
           smegmatis str. MC2 155 RepID=A0QZW4_MYCS2
          Length = 372

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 52/298 (17%), Positives = 120/298 (40%), Gaps = 21/298 (7%)

Query: 23  AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI-AVPDGEKTLNAIDSLAASGA 81
           ++ +K+ F V+    P+   + + A++ GK LG +V  I A  D  +  N I +  A G 
Sbjct: 89  SDPIKITFSVEGLSHPFLVKQKQLAEETGKRLGAQVNVISANDDVNQQFNDIQTAIAQGT 148

Query: 82  KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141
              ++     +   A++ +A    +         +  +       P      +  G++ G
Sbjct: 149 DALMMMPATTQGLDAVLKQAEAAQIPYFFSQKGMLGVEPASQVLAPY-----SNEGQQLG 203

Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201
           + + +    +G +  + A+++    +  +  R  +  +  L++  F    +      +  
Sbjct: 204 EWVVEHY--KGQEDVKVAIISGIPGDQSSDARVNSFLLPLLRSCNF---NVVANQPGNYR 258

Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261
              +  AA +ML  +P++   L+ G ND   LGG+ A +  G +  D+  +G++G   + 
Sbjct: 259 RGDSEKAAQNMLAANPDID--LLFGANDEAALGGIAALKSSGRQGVDV--VGLDGQTDM- 313

Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
             +  Q+     +++  P        E   +++     P     V D  L+T++  + 
Sbjct: 314 -FAAIQSGQALATVIHKPTAG--IVVEEAVDYLRGK--PVPEYRVLDEDLVTKETIET 366


>UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sorangium cellulosum
           'So ce 56' RepID=A9FWH4_SORC5
          Length = 332

 Score =  116 bits (291), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 50/302 (16%), Positives = 105/302 (34%), Gaps = 18/302 (5%)

Query: 25  NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDG-EKTLNAIDSLAASGAKG 83
            + +GF     E  W     K      +    +++     +     +NA++     G   
Sbjct: 45  EIVVGFSQTGAESSWRIAHSKSIQAEAEKRHVQLLFADGQNVHNNQVNAVNGFITKGVDV 104

Query: 84  FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143
            VI   +       + +A+   + V+ +  + V+A+    +TV  ++      G R G+ 
Sbjct: 105 IVIAPQESVGWKPTLKEAKRAGIPVV-LTSRGVDAEEDLYETV--MVADFVWEGRRAGEW 161

Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203
           L K+   +        +  +     D A  R TG  +A+  A  P+ +I    +      
Sbjct: 162 LAKQTNGK-----ARIIELVGTPAADVAVMRKTGFAEAI--AKHPDMKIIASQSGDFTRT 214

Query: 204 GAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA-DIIGIGINGVDAVSE 262
                  ++L  H   +   +   ND   LG ++A +  G K   DI+ I I+ V     
Sbjct: 215 KGKTVMETLLSAHKG-EINAVYAHNDDMALGAIQAIQAAGLKPGQDILVISIDAVKPA-- 271

Query: 263 LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELE 322
                      ++  +P +HG    + +   V  +  P +   +    +  R+     + 
Sbjct: 272 FEAMMEGKLNATVECNP-MHGPLLFDTIDKIVRGEKVPKR--TIVPGQIFEREQAAAAIG 328

Query: 323 KK 324
            +
Sbjct: 329 SR 330


>UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Actinobacteria (class) RepID=Q1ARR7_RUBXD
          Length = 343

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 58/296 (19%), Positives = 108/296 (36%), Gaps = 22/296 (7%)

Query: 26  LKLGFLVKQPEEPWFQTEWKFADKAGK----DLGFEVIKIAVP-DGEKTLNAIDSLAASG 80
           ++L  + K     +++T  + A  A K    ++  +   +A   D    +N + +    G
Sbjct: 43  IELAVVPKAVGFDFWETVRQGAVCAAKRAEGEVDVQWDGVAQETDVTGQVNLLQNFITQG 102

Query: 81  AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140
             G V    D K+   +  +A    + V+ +D    +      + VP+         ER 
Sbjct: 103 VDGLVYAATDAKVLHDVTQQALDQGITVVNID----SGTDPQPENVPVFATDNVAAAERA 158

Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSN 200
            + L +++ + G  V              T   RT G  + LK    P+ ++    +  +
Sbjct: 159 TEYLVEQLGEDGGKVA----FIPFQPGTATNDTRTEGFKNVLKEN--PQVKLVAEQSSES 212

Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260
           +   A      +L  HP++    I   N+  VLG   A    G KA +II +G +   A 
Sbjct: 213 NYNRALQVTEDILTAHPDLD--AIYAANEPGVLGAAEAVRSAG-KAGEIIIVGWD--TAP 267

Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316
            EL   +       +  +P   GY         +    +       T  +L+TR+N
Sbjct: 268 DELKAVREGVVSALIAQNPFRMGYDGVNAAVKMIRTGEQVEG--GDTGAILVTREN 321


>UniRef50_B7GJK7 ABC-type sugar transport system, periplasmic component n=1
           Tax=Anoxybacillus flavithermus WK1 RepID=B7GJK7_ANOFW
          Length = 332

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 56/296 (18%), Positives = 118/296 (39%), Gaps = 22/296 (7%)

Query: 30  FLVKQPEEPWFQTEWKFADKAGK--DLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVIC 87
            + ++ + P+++   + A +AGK  D+  E I       ++ +  ++   AS   G ++ 
Sbjct: 57  LISQEFDNPYWRKIEQGAKEAGKNYDVNIEYIGPLRTSVDEQVKLLEKAIASRVDGIIVQ 116

Query: 88  TPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKE 147
               +    ++ KA   ++ VI +D     A       +  V     + G+  G+ +   
Sbjct: 117 NLKDEAFIPLIDKAISRNIPVITID-----ADAPKSRRIAYVGTNNFEAGQLLGKAVVSR 171

Query: 148 MQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFD 207
           ++      +E  VM  T +  +  R R  G +  +  A  P  ++  V + +     A  
Sbjct: 172 VEGE----RELGVMIGT-DTSENQRLRLQGFLSVI--AEHPRLKVVSVASSNISRIQASI 224

Query: 208 AANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQ 267
            A  ML +HP +   ++VG +    +G   AT+       DI   G + V+   E    Q
Sbjct: 225 QAEQMLRKHPHIS--VMVGTSALDAIGIRMATKN--LHRQDIQIFGFDDVEETIEAI--Q 278

Query: 268 ATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEK 323
                 +++  P   GY + +++   ++      +    T + +I R N ++E  K
Sbjct: 279 QGDIVATVVQKPYDMGYSAVKLMVEHLSGKQIQKE--HFTAIEVIDRQNVQQERNK 332


>UniRef50_C1TNC1 Monosaccharide ABC transporter substrate-binding protein, CUT2
           family n=2 Tax=Synergistaceae RepID=C1TNC1_9BACT
          Length = 338

 Score =  116 bits (290), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 60/315 (19%), Positives = 117/315 (37%), Gaps = 20/315 (6%)

Query: 12  GLAAVMSQSAMAENLK----LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP--- 64
            +A +  Q     ++     +G LV     P++ T  +   +  K++G  V  +A P   
Sbjct: 32  SIATIEDQMGSLPDITGQERIGVLVITLSNPYWVTMKERYGEWAKEMGISVEVMAAPTEK 91

Query: 65  DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124
           D +  LN ++++ A    G ++   DP      + KA    + V+      V+  G    
Sbjct: 92  DLKSQLNTLEAMVAKKYDGIIVTPMDPFNLIPGIVKADEKGIPVV-CSGPEVSRDGLKQA 150

Query: 125 TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA 184
              +     T   + QG+   ++M ++     E A++        +  RR  G+ +  + 
Sbjct: 151 GAVMDGWI-TATFKDQGRLCAEDMAEKLPSGSEVAIIEGIPGAGQSKARR-EGASEGFEK 208

Query: 185 AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF 244
           AG    ++  V   + D   A+D   +++  HP++K   I   ND   L  V A E  G 
Sbjct: 209 AG---LKLVAVEAGNWDRNRAYDITTNLVKAHPQLKG--IYCANDVMALAAVDALEVAGI 263

Query: 245 KAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFT 304
           +   + G               ++    GS   S       +       + KD + P+  
Sbjct: 264 EGVTVYGTDF----IPEAAEAIKSGRLAGSTTFSQAAWTRGTLVYTLKLIKKDEDLPEKL 319

Query: 305 EVTDVVLITRDNFKE 319
            V  + L+  +N  +
Sbjct: 320 SV-PITLVNGENIGQ 333


>UniRef50_A1STY3 Transcriptional regulator, periplasmic binding protein of LacI
           family protein n=1 Tax=Psychromonas ingrahamii 37
           RepID=A1STY3_PSYIN
          Length = 334

 Score =  116 bits (289), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/296 (17%), Positives = 110/296 (37%), Gaps = 20/296 (6%)

Query: 24  ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---PDGEKTLNAIDSLAASG 80
           +   +  ++K    P+F+   + A +A KDLG  ++          ++ +  +  L    
Sbjct: 52  DKHTIALVMKTLTNPFFKEMERGARRAEKDLGINLLVKTAAQETSIQQQIGIVADLIELK 111

Query: 81  AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQF--VNAKGKPMDTVPLVMMAATKIGE 138
               VI   D      I+  A+   + VI +D+      +K   +  VP + +      E
Sbjct: 112 VDALVIAPGDSVELIPILKHAQDKGIIVINIDNLLDQEYSKKVGLLNVPFISVDN----E 167

Query: 139 RQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTK 198
               +  K + ++     E A++      L+ A  R  G++ A   + F    +    + 
Sbjct: 168 LAAYKSTKVLTEKLTQPTEVAIIEGIRGALN-AELRKNGAIRAFSESKF--ATLVATESA 224

Query: 199 SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVD 258
           +  I  AF+ A  +  ++P +    I   ND   LG +   +  G    ++  +  + + 
Sbjct: 225 NWKIDEAFELAAKLYNKNPNI--GAIFCANDMMALGVIEYLQSTG--KDNVQVVAFDAI- 279

Query: 259 AVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314
               L+  Q+     ++       GY+      N ++    P K T   +  +IT+
Sbjct: 280 -PQALNAVQSGVLLATVDQDAAEQGYQGILSANNILSGKKTPLKIT--IEAKIITK 332


>UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8RKK5_9CLOT
          Length = 350

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 45/293 (15%), Positives = 98/293 (33%), Gaps = 23/293 (7%)

Query: 28  LGFLVKQPEEPWFQTEWKFADKAG---KDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGF 84
           +  +++  +  +         K     KD        +  D    ++ +++   +G +  
Sbjct: 69  VSVIIETFDNTFASFVMNAMKKYEEEHKDKIHITYLDSKQDANTQISQVENQILNGTQAI 128

Query: 85  VICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQEL 144
           +    D K    IV   +   + +IA +  F N           V       G    +  
Sbjct: 129 ICLAVDAKQSEPIVRACKEAGVPLIAFNRIFEN-------CDSFVGADGAVAGSLLARFT 181

Query: 145 YKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPG 204
            ++   +G     + +M      +     R    ++ L    +P+ Q+            
Sbjct: 182 GEKTGGKGNVAIVNGIMGQENQFI-----RRDAIVETLGEM-YPDMQVVIEGAGDWKRDK 235

Query: 205 AFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELS 264
           A     + L    ++    I+ +ND   +G   A E  G K+ DII  G+NG      ++
Sbjct: 236 ALQLVETWLQSGTDID--AILCLNDDMAMGTQLAVEQAG-KSDDIIVCGVNG--DPDGIN 290

Query: 265 KAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317
             +      ++  +PD    ++ E    ++  +   P+   +    L+T DN 
Sbjct: 291 AVRDGKIAATVFQNPDRQAEEALEAALQYIHGE--KPESKIMIPFELVTADNV 341


>UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobacterium dentium
           RepID=D2Q6W7_9BIFI
          Length = 327

 Score =  115 bits (288), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 53/305 (17%), Positives = 113/305 (37%), Gaps = 23/305 (7%)

Query: 5   TKALAAIGLAAVMSQSA------MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV 58
             A+AA  +A + +  A       ++N ++  + K   + ++ +  + AD A    G  V
Sbjct: 9   LAAVAAFTVAPLSACGAGQSNGSESKNYEIAMVAKGFSQSFWVSVHQGADDAAAKYGATV 68

Query: 59  IK---IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQF 115
                      +K  + + +          I   D    +  V  A+   + + A D  F
Sbjct: 69  TFNGPDNDSQVDKQADMVQNAINKSPDAVAIAPLDEAALTPAVQSAKSASIPLFAFDTAF 128

Query: 116 VNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRT 175
                    TV     +  ++G+   + L   +  +G        +   +    T+  R 
Sbjct: 129 ETNADAITSTVK---TSNREVGKVAAENLIALLNGKGKYA-----VIAHSQTDATSTERR 180

Query: 176 TGSMDALKAAGFPEKQIY-QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLG 234
            G +D +K    P+ ++  +V   + D   A D A+++L  +P++    I   N++TV+G
Sbjct: 181 DGFLDYMKKNA-PDMEMVGEVQYSNADQAKAQDIASAILQANPDLD--AIFATNEATVVG 237

Query: 235 GVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWV 294
                E        ++ +G++   A  +    +     GS+  +P   GYK+ E     +
Sbjct: 238 AATPVESALKSGHKVLLVGVDSGKA--QQQYIRDGVISGSVSQNPYQIGYKTIENAVKSL 295

Query: 295 AKDVE 299
             +  
Sbjct: 296 NGEKI 300


>UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Reinekea blandensis
           MED297 RepID=A4BF94_9GAMM
          Length = 319

 Score =  115 bits (287), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 110/303 (36%), Gaps = 20/303 (6%)

Query: 19  QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPD---GEKTLNAIDS 75
           Q+   +  K+  ++K    P++    + A +A  +LG E+I  +  +    E+ ++ ID 
Sbjct: 29  QATPVDKPKVLLVMKSLVNPFYIQMEQGARQAANELGVELIVRSGTNETLVEQQISLIDE 88

Query: 76  LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA--KGKPMDTVPLVMMAA 133
             A+G    VI   D      ++ +A    +K++ +D++      +   +  +P V +  
Sbjct: 89  QLAAGIDALVIAPADSIAILPVLIRANELGVKIVNIDNRIDTNAIQRAGLPAIPFVSVDN 148

Query: 134 TKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIY 193
              G   G+ L +            A++         AR R  G+  AL+       ++ 
Sbjct: 149 EFGGYEAGKILAELAG-----PDAKALIIEGPRSAINARERRDGARRALQENN---IEVV 200

Query: 194 QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIG 253
                S  +  A+    ++  ++PE+   +I   ND   LG +   +  G    D +  G
Sbjct: 201 ASEVASWKLESAYALTQNVHARNPELN--VIFAANDMMALGALLYAQEHGLN--DWLIAG 256

Query: 254 INGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLIT 313
            + +       +        ++    D  GY+      + +           V   V+  
Sbjct: 257 FDNIPDARAAVRE--GRLAVTIDQQADRQGYQGVATAVDLLNDKAV-DDVVLVKTRVITA 313

Query: 314 RDN 316
            DN
Sbjct: 314 DDN 316


>UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional regulator n=11
           Tax=Proteobacteria RepID=A8GD77_SERP5
          Length = 305

 Score =  115 bits (287), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 115/323 (35%), Gaps = 21/323 (6%)

Query: 3   KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-I 61
           K+ K +  +      S S +AE   +G  +   ++ +        DK  K  G  V    
Sbjct: 2   KYLKRIVLVAALGC-STSVLAE--TIGVSMAYFDQNFLTIIRHSIDKEAKARGISVQFED 58

Query: 62  AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121
           A  D  +  + + +  ++G    ++   +     AI        + ++ V+    ++  K
Sbjct: 59  ARGDVGRQADQVQNFISAGVDAIIVDPVNSAGTPAITKMVTKAGIPLVYVNRTPGDS--K 116

Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181
               V  V     + G  Q +EL +    +G        +         A +RT      
Sbjct: 117 LPAGVVFVGSDEKQSGTLQMEELARLANYQGNVAVMIGNLTDAG-----ALQRTKDVEQV 171

Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241
           +  A +P+ ++ Q  + +       D   + +     +   ++   ND   +G + A + 
Sbjct: 172 V--AKYPKMKVVQKQSANYSRSEGMDLMLNWITNGESID--IVAANNDEMAIGAIMALQQ 227

Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATG-FYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300
            G + + ++   + G+DA  +  KA ++G    ++       G  S ++    +  +   
Sbjct: 228 AGKQGSKVL---VGGIDATPDGLKALSSGKMQVTVFQDAVGQGKASVDVAQRMIKGEKLD 284

Query: 301 PKFTEVTDVVLITRDNFKEELEK 323
           P +       L+T  N ++   K
Sbjct: 285 PYYW--IPFELVTPANMQKYAAK 305


>UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Sinorhizobium RepID=A6UHJ3_SINMW
          Length = 322

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 50/311 (16%), Positives = 103/311 (33%), Gaps = 19/311 (6%)

Query: 19  QSAMAENLKLGFLVKQPEEPWFQTEWKFA-DKAGKDLGFEVIKIAVPD-GEKTLNAIDSL 76
             A  +  ++GF      EPW     K    +A K    E+I     D  EK +  +++L
Sbjct: 28  AVAQDKKFRIGFSQATTIEPWRAQFNKDIIAEAAKHPDVELIITDGEDRTEKQVADVENL 87

Query: 77  AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136
                   ++   +    + +V +A    + V  +D      +         V      I
Sbjct: 88  IRQEVDALLVSPKESAGLTGVVQQAIDAKIPVFVLDRNVETDQYTQ-----FVGGDNKLI 142

Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEK-QIYQV 195
           G   G+   + +  +G   + + V          A  R  G  +       P    +   
Sbjct: 143 GRAAGEYAVELLGGKG-KAQGNIVEIWGGMGTQPAHDRHDGFHEFTDKE--PGIKNLLDK 199

Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255
            +       A++   + L  + ++   L+ G ND    G   A +  G +  +I  IGI+
Sbjct: 200 QSGDWKQDQAYNIMATALRNNEKID--LVYGHNDPMAYGAYLAAKDAGREK-EIKFIGID 256

Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315
            +     ++         + L +    G +       ++  +      T   D + +T +
Sbjct: 257 AL-PNEGVTWVSNGELTATFLYATP--GAEGLRQAVKFLKGEKVEKTVT--LDTLKVTEE 311

Query: 316 NFKEELEKKGL 326
           N  + ++  GL
Sbjct: 312 NAAQIMKDNGL 322


>UniRef50_A3CKH1 Periplasmic sugar-binding protein (Ribose porter), putative n=6
           Tax=Streptococcus RepID=A3CKH1_STRSV
          Length = 328

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 49/299 (16%), Positives = 104/299 (34%), Gaps = 22/299 (7%)

Query: 24  ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAK 82
           + +K+G         +++T     +K     G  + ++    D  K    ID        
Sbjct: 42  KQVKIGVTYMTMNNDFYKTLNAELEKKTNQQGSRLYVRDPELDEGKQSQQIDFFVREKVD 101

Query: 83  GFVICTPDPKLGSAI--VAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140
             VI        S I  + KA+   +K+I VD          +     ++    + G   
Sbjct: 102 VIVINPVKSNSPSIISSLQKAKKAGIKIIVVDAPISQD----VKVDTTIVSDNYQAGVLI 157

Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSN 200
            Q++ K +         + ++ +      +A  R  G +D ++    P  +I        
Sbjct: 158 AQDMMKRLP-------SANILLLEHRNAVSAMDRIQGFIDTIEKQ--PSYKIISQKETLG 208

Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260
                       L     +   +++ +ND   +G + A + QG     I   G++G   +
Sbjct: 209 QTEETMPQVKGAL--DEGLDFNVVMALNDRAAIGALAAIKNQGLDK-KISIYGVDGSPDI 265

Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
                A  +   G++  SP   G K ++++   + ++ +      +  V L+ RDN  +
Sbjct: 266 KNFL-ATTSDIEGTVAQSPIQMGRKVAQVIE--LMQEGKSYDSQYLIPVHLVNRDNISQ 321


>UniRef50_C6D2L3 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Bacillales RepID=C6D2L3_PAESJ
          Length = 332

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 52/309 (16%), Positives = 104/309 (33%), Gaps = 22/309 (7%)

Query: 22  MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPD---GEKTLNAIDSLAA 78
              ++ +    K     +++      + A  + G  V  I  P     +     +     
Sbjct: 36  KTVDIIVTVKAKSSAIDFWKVLITGVEDAANEFGANVTVIGPPSETEIDTQTEQLKQAIR 95

Query: 79  SGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGE 138
                 V+   D      +  +     +K+I VD +  +           +       GE
Sbjct: 96  QKPDAIVMAATDYNRLVPVAQQIVKAGIKLITVDSRINSDDALS-----FIATDNIAAGE 150

Query: 139 RQGQELYKEMQKRGWDVKESAVMAITA-NELDTARRRTTGSMDALKAAGFPEKQIYQVPT 197
           + G+E+ K + +       S V  ++      +   R  G    L+  G    ++     
Sbjct: 151 KAGEEMAKLLPESS----SSKVAIMSYVYGTSSQLEREKGVRQWLE--GHSHIEVASTLY 204

Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV 257
               +  A++    +L + P +K   IVG+N+ + +G  RA    G     +  +G +  
Sbjct: 205 SEGRLEKAYELTKELLSEDPGIKG--IVGLNEPSTVGAGRAIRDLGLS-GKVKLVGFDSS 261

Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317
             V E+   +      +++  P   GY S +     V     P      T+ V+I +DN 
Sbjct: 262 --VDEVKLIEGGVLQATIVQKPYNMGYLSVKTAIEAVRGKKVPKLID--TESVIINKDNM 317

Query: 318 KEELEKKGL 326
             E  +K L
Sbjct: 318 YTEQNQKLL 326


>UniRef50_Q029E0 Transcriptional regulator, LacI family n=1 Tax=Candidatus
           Solibacter usitatus Ellin6076 RepID=Q029E0_SOLUE
          Length = 338

 Score =  114 bits (286), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 62/305 (20%), Positives = 107/305 (35%), Gaps = 29/305 (9%)

Query: 16  VMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV-PDGEKTLNAID 74
           V    A      +G +V      +F    K      + LG++V+      +G+   + +D
Sbjct: 57  VARSLAARRTFMIGLIVPDLMHSFFAEIAKGVAATIRPLGYDVVICNSEENGDLESSEVD 116

Query: 75  SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134
            L      G ++ +  P    A+  +        + +D +F +         P V     
Sbjct: 117 RLLGRQVDGLLLASAQPPSSLAVFERIEARGTPYVLIDRRFADVHA------PYVGADDE 170

Query: 135 KIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAG--FPEKQI 192
            IG    Q L         D     +  I    + T   R  G  +AL A+G   PE  I
Sbjct: 171 AIGRMATQHLI--------DRGCRRIAHIAGPAVTTGLGRQKGYEEALAASGINIPEGFI 222

Query: 193 YQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK-AADIIG 251
            Q      D    + A   +L   P      I G ND T  G ++A    G +   +I  
Sbjct: 223 VQA----TDDDTGYQATRRLLKLTPRPD--AIFGYNDPTAAGAMKAILEAGIRIPEEIKV 276

Query: 252 IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311
           IG+  V     L    +     ++  S    G +++++L   +    + P  T + D +L
Sbjct: 277 IGVGNVHYSDLLRVPLS-----TIDQSSASIGQQAADILLKAIGNKRKRPAKTILIDPIL 331

Query: 312 ITRDN 316
           I R++
Sbjct: 332 IARES 336


>UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme
           DSM 15981 RepID=C0DAQ0_9CLOT
          Length = 332

 Score =  114 bits (285), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 52/305 (17%), Positives = 114/305 (37%), Gaps = 24/305 (7%)

Query: 19  QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKD----LGFEVIKIAVP-DGEKTLNAI 73
            ++  +  K+ F+VK  +  +F    + A+K G+D    +  E++    P + E+ +  +
Sbjct: 47  TASTGQKYKIAFIVKSLQSAFFINMTEAAEKCGQDYADKISVEIMAPQTPFNIEEQIQLV 106

Query: 74  DSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAA 133
           +    +     VI   D +     + KA    + V+       N K    D V  V    
Sbjct: 107 EQCITNKMDAIVIAPCDSEGIVPAIKKANDAGILVVT-----ANTKANGGDIVSYVGAQN 161

Query: 134 TKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIY 193
             +G      L++++  +G       ++        T+  R  G  +ALK   +P  ++ 
Sbjct: 162 FDVGYSLATALFEKLGGQGK-----VILIEGKAGNSTSEERAEGFKEALK--EYPGIELL 214

Query: 194 QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIG 253
                  D   A     + L  + ++    ++ +     LG + A +  G    +I+ + 
Sbjct: 215 ASQPADWDRASAMTVMENCLQTYDQIDG--VLTLTKDMGLGTIEAIKSAGRDK-EIVSMT 271

Query: 254 INGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLIT 313
            +  D V    KA     Y S   +     Y +  ++    A D      +++  + ++T
Sbjct: 272 FDVDDDVISALKA--GDLYASGNQNEQSQAYIA--IMTAVFALDGYKVDSSQIMPITVVT 327

Query: 314 RDNFK 318
            ++F+
Sbjct: 328 AEDFQ 332


>UniRef50_C4FY38 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271
           RepID=C4FY38_9FIRM
          Length = 339

 Score =  114 bits (284), Expect = 5e-24,   Method: Composition-based stats.
 Identities = 66/294 (22%), Positives = 113/294 (38%), Gaps = 14/294 (4%)

Query: 11  IGLAAVMSQSAMAEN--LKLGFLVKQPEEPWFQTEWKFADKAGKD-LGFEVIK-IAVPDG 66
           + L   +S    AE+  +K+G    + ++ +  +     +K  K+    E+I   +  D 
Sbjct: 16  LALVPSLSPKVQAEDKNIKIGVAFYKYDDAYMSSVRVALEKIAKEHSNVELIVNDSQNDQ 75

Query: 67  EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTV 126
            K  + ID +   G    +I   D     A+V KA+  ++ ++  + +      K  D  
Sbjct: 76  AKQNDQIDVMIQKGVDVLLINVVDTGAAEAVVQKAKDANIPLVLFNREPATDVVKAYDKA 135

Query: 127 PLVMMAATKIGERQGQELYKEMQ-----KRGWDVKESAVMAITANELDTARRRTTGSMDA 181
             V   A + G  QG+ + +  +      R  + K   VM I   E   A  RT  ++D 
Sbjct: 136 RFVGTTAKEAGIIQGKMIAELWKSDKKYDRNGNGKLDYVMLIGDPENPEAIARTKYAVDT 195

Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241
           L  A   E         + D   A  A ++ L +  +    +I+  NDS   G + A +G
Sbjct: 196 LTEAKI-EVNKLGDQVANWDPDKAKTATDAWLAKDAD-NIDVIISNNDSMASGAIAALQG 253

Query: 242 QGFK--AADIIGIGINGVDAVSELSKAQATGFY-GSLLPSPDVHGYKSSEMLYN 292
            GF   A     I + GVDA  E     A G   G++    +        + YN
Sbjct: 254 AGFNTDAKADKKIPVFGVDATEEAVDLIARGIMTGTVKQDAEGMAKAVFALSYN 307


>UniRef50_C3MI72 Putative ribose ABC transporter, ribose-binding protein n=1
           Tax=Rhizobium sp. NGR234 RepID=C3MI72_RHISN
          Length = 367

 Score =  113 bits (283), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 47/295 (15%), Positives = 98/295 (33%), Gaps = 24/295 (8%)

Query: 26  LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI------AVPDGEKTLNAIDSLAAS 79
           LKLGFL    +  + +      ++  K  G E I++      +    +  + A+++    
Sbjct: 71  LKLGFLPTAMDTYYQRVLAGVKEEIDKRGGAEAIELLVQAPSSQSATDDQIRAMEAWIND 130

Query: 80  GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139
           G     +   +       + +A    + V   +  F +        V  V    +  G  
Sbjct: 131 GIDAIAVALYNEGALLPSIRRATEAGIPVFLFNSPFADNP----YYVSDVGYDQSDGGRA 186

Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199
           Q Q +      +     E  +  +         +R  G  + +     P  +I       
Sbjct: 187 QAQWIVDTYGDK-----EVKIGILEGLPGPHTSQRMKGFNEIISK--HPNFKIVAQQPAG 239

Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259
                      +M   +P+++  ++V + D   LGG++A + +G        + I G + 
Sbjct: 240 WVRAQGLSVTENMFTANPDIE--VLVALYDEMALGGLQALKAKGLNGK----VAIVGYEN 293

Query: 260 VSELSKAQATG-FYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLIT 313
           + E + A  TG F  ++       G      +  ++ K    PK   V+  V   
Sbjct: 294 MKEANAAILTGDFSATVDTGAKEEGRNIVRAVDEFLMKGNPLPKKIFVSPKVYDA 348


>UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyricum E4 str. BoNT E
           BL5262 RepID=C4IB16_CLOBU
          Length = 324

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 58/313 (18%), Positives = 105/313 (33%), Gaps = 22/313 (7%)

Query: 8   LAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDG 66
              I    V S++ +    K+G         +F+   +      ++ G  +I        
Sbjct: 26  CIYISSNGVYSENGVESKRKIGATYMTMNNSYFKIINEEIRYVVEENGDTLITRDPALSL 85

Query: 67  EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTV 126
           +K +  I            I   D       +  A+        +             T 
Sbjct: 86  DKQIEEIYDFIDLKVDAIFINPVDWVGIRNALIDAQKAG----IIIIAIDTDIYDDDLTA 141

Query: 127 PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAG 186
             V+    K G    ++L   M KR      + ++ +      +A  R  G  DA++   
Sbjct: 142 CTVVSDNYKAGVLCAEDL---MNKR----NSANIILLEHKSAKSAIDRINGFEDAIRNN- 193

Query: 187 FPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA 246
               ++         +  A     ++L++  +V    I+ +ND + LGG+ A E +  K 
Sbjct: 194 -KNFKVVARSDCDGQLETAMPVVENILLKQKDVDT--IMALNDPSALGGIMALEEKNIKG 250

Query: 247 ADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEV 306
            ++   GI+G     ++ K        ++  SP   G  S E LYN         K   V
Sbjct: 251 INVY--GIDGSPDGKKMVKEDK--MSATVSQSPRKIGRISGESLYNIFQGKEVDKKI--V 304

Query: 307 TDVVLITRDNFKE 319
             V LIT++N  E
Sbjct: 305 VPVELITKENIDE 317


>UniRef50_Q221W3 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Burkholderiales RepID=Q221W3_RHOFD
          Length = 331

 Score =  113 bits (283), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 63/318 (19%), Positives = 113/318 (35%), Gaps = 21/318 (6%)

Query: 4   FTKALAAIGLAAVMSQSAMAENLK---LGFLVKQPEEPWFQTEWKFADKAGKDLG--FEV 58
           F  AL AI L   +  +A A+++K   +  + K    P+F      A  A   LG  ++ 
Sbjct: 24  FQFALLAIPLTLAVQMNATAKDVKDLRIAVIPKVAV-PFFDDCNNGAKAAADKLGVQYQW 82

Query: 59  IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
           +      G   +  ++ L +    G  I   +PK   A + KA    +KV+  D    N+
Sbjct: 83  VVPQNTQGSTQVRILEDLISKKVDGIAISVNEPKSVEAAIKKAVASGIKVVTFDSDSANS 142

Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
                     +    +  GE  G+ + K +   G     +  +            R TG 
Sbjct: 143 GRSM-----YIGTINSAAGETMGESMAKAIDGEGEVAILTGQLGAAN-----LNERITGI 192

Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238
             +L    +P+ ++       +D+  A     S+   HP +K    V       +  V A
Sbjct: 193 KKSLSK--YPKIKVVATEGTEDDLAKAVSTTESLFRGHPALKGIFGVSQVGGPAVSKVMA 250

Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
           T+  G K   +     +  D    +   +     G ++  P   G  + E L + +    
Sbjct: 251 TKEFGSKKGAVKVFAFD--DLPDTVKGVKEGYIQGIMVQRPVTMGKLAVEHLVDQITGKE 308

Query: 299 EPPKFTEVTDVVLITRDN 316
             PK  + T V ++T  N
Sbjct: 309 PAPKDVD-TGVNVVTSQN 325


>UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1
           RepID=B0P063_9CLOT
          Length = 326

 Score =  113 bits (281), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 51/292 (17%), Positives = 105/292 (35%), Gaps = 21/292 (7%)

Query: 29  GFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA-VPDGEKTLNAIDSLAASGAKGFVIC 87
           G         +++          +  G ++I +    D +K    I  L         + 
Sbjct: 48  GATYMTMNNEFYKIVNNQIRMQVEKNGDQMITLDPALDQKKQNEQIKQLVKRKVDAIFLN 107

Query: 88  TPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKE 147
             D K     +  A+   + VI +D Q   +    M  V        K G    +E+ K+
Sbjct: 108 PVDWKAVEPGLVAAKKAKIPVIVIDSQVYRSDLVAMTIV----SDNYKAGVLCAKEMMKQ 163

Query: 148 MQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFD 207
                    ++ ++ +T N   +A  R  G +D +K       +I         I  A  
Sbjct: 164 K-------DQANIVLLTHNAARSAVDRINGFLDTIKNN--KNYKILASADTQGQIERALP 214

Query: 208 AANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQ 267
             + ++ ++  +   +++G+ND   +G + A + +G +   ++  GI+G     +L K  
Sbjct: 215 KVDKIIEEYQNID--VVMGLNDPAAMGALAALDSKGAREG-VLVYGIDGSPEGKKLIKE- 270

Query: 268 ATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
                G+   SP      +    Y  +  +    K  +V  V +IT+ N ++
Sbjct: 271 -GMMTGTAAQSPKQMADTAVNAAYQILQGEKVEKK--KVISVQMITKKNVEQ 319


>UniRef50_UPI000185D1D6 putative DNA-binding response regulator/sensor histidine kinase n=1
           Tax=Capnocytophaga sputigena ATCC 33612
           RepID=UPI000185D1D6
          Length = 903

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 48/262 (18%), Positives = 91/262 (34%), Gaps = 23/262 (8%)

Query: 58  VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117
           +I+    D  K +  I+          V+   + +  + ++ KA    + VI VD +   
Sbjct: 63  LIRSVKDDTPKQIADIEWFIEQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRKIAT 122

Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177
                      V     +IG+  G      ++ +G   +       T++       R  G
Sbjct: 123 E-----SYTAYVGANNYQIGKEAGLYAIGVLKGKGNIAEVRGTKGSTSDA-----ERHKG 172

Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG-V 236
            +DALK A  PE QI      +     A      +  +HP +   L+  MND    G   
Sbjct: 173 FVDALKNA--PEVQIVAETWGNFLQADAKTQMQQIFQEHPHID--LVFAMNDPMAAGTHE 228

Query: 237 RATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296
            A +  G        IG++ +  V  +   + +    S +      G K  E+    + K
Sbjct: 229 AAMQFNGKIP---FIIGVDALQQVG-IQNIENSVQDASFIYP--TGGEKVIELAMKILHK 282

Query: 297 DVEPPKFTEVTDVVLITRDNFK 318
              P +   + +  ++ + N +
Sbjct: 283 Q--PFQRENILNTTVVDKSNVR 302


>UniRef50_A5D1M8 ABC-type sugar transport system, periplasmic component n=1
           Tax=Pelotomaculum thermopropionicum SI
           RepID=A5D1M8_PELTS
          Length = 386

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 60/313 (19%), Positives = 109/313 (34%), Gaps = 23/313 (7%)

Query: 8   LAAIGLAAVMS---------QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV 58
           LA   L+   S         Q+   + +  G +VK+P  P+ Q     A++  K+LG +V
Sbjct: 28  LAVFLLSGCASKQAGQKTPEQAGNGKQITFGMIVKEPTAPFVQAFINGAEQKAKELGVKV 87

Query: 59  -IKIAVPDGEKTLNAIDSLAASGAKGFVIC-TPDPKLGSAIVAKARGYDMKVIAVDDQFV 116
            IK    D  K +  +D+       G ++    D K     V K     + +IA+D    
Sbjct: 88  DIKDGQADSLKIMELMDNFIVQKVDGLIMAGAVDLKAIVPGVKKLNEAGIPIIALDT--- 144

Query: 117 NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKR--GWDVKESAVMAITANELDTARRR 174
           + +G  +D    +     +  ++  +   K ++ R  G   K   +    A E   A+  
Sbjct: 145 SPEGGKVDL--FISFDIEESSKKAAEAFIKGIKDRNNGEVPKGVVIEITGAVEDMFAQAC 202

Query: 175 TTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLG 234
           + G    +    +P+  + Q   K N+   +    + +L ++ +    + V   D    G
Sbjct: 203 SKGFHAVVDR--YPQLTVVQGEGKWNNED-SHKRTSDLLTRYGKEVKGIYVHTPDIMGPG 259

Query: 235 GVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWV 294
            V A E  G    D    GI        L   +       +          + + LY+  
Sbjct: 260 VVSAIEAAGLNPKDFGITGI--CMGPEGLQLIKEGKILAIVEQPALDSAELAVQYLYDLK 317

Query: 295 AKDVEPPKFTEVT 307
                P     VT
Sbjct: 318 TGKGIPKIGDTVT 330


>UniRef50_C0C300 Putative uncharacterized protein n=2 Tax=Clostridium hylemonae DSM
           15053 RepID=C0C300_9CLOT
          Length = 347

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 52/287 (18%), Positives = 113/287 (39%), Gaps = 19/287 (6%)

Query: 24  ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI--AVPDGEKTLNAIDSLAASG- 80
           E+LK+  + K    P F++ +  A +   +LG  +  I  +  D  K +N +  L + G 
Sbjct: 45  EDLKVVMMPKVMGMPIFESYYNSAKEQADELGITLDYIGPSELDASKQVNLVQDLISGGD 104

Query: 81  AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI-GER 139
               +IC  D +    ++ +A    + V   DD  V+   +       + M + KI GE+
Sbjct: 105 TDALLICPADGEALVPVLKEAMDAGIHVYTWDDDVVDESAREY----FINMCSDKIYGEQ 160

Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199
            G+ + + ++ +G       +  +  N   T+      ++  +    +P+ ++       
Sbjct: 161 MGKTVGEMLKGKGK------IGVVNGNMTATSLTLKEEALQDVLKNEYPDIKVMPTVYHG 214

Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259
            D   A+     +L  +P++    ++      +LG  +A +  G    ++I  G    + 
Sbjct: 215 GDQQKAYALCQDLLTANPDLDLIAVIAT--PGLLGAAQAVDASGRN--EVIVYGAEQPNN 270

Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEV 306
           + E  K       G L       G ++  ++Y+ +A   E  +   V
Sbjct: 271 IKEYMKKDGLEVVGCLW-DVMTLGKEAVNIVYSCLADGKEYKEGDTV 316


>UniRef50_A0R773 Sugar ABC transporter substrate-binding protein n=1
           Tax=Mycobacterium smegmatis str. MC2 155
           RepID=A0R773_MYCS2
          Length = 332

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/308 (17%), Positives = 104/308 (33%), Gaps = 18/308 (5%)

Query: 9   AAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP---D 65
            ++ L       + ++ +K+G + K    P+F    + A       G ++I +A     D
Sbjct: 19  GSLVLGMTACGGSGSDGVKVGLITKTDSNPYFVHLREAAQAQADKDGAQLIAVAGAFDGD 78

Query: 66  GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDT 125
            E  + AI+++   G KG +I           + KAR   + VIA+D             
Sbjct: 79  NEGQVTAIENMVGQGVKGILITPNSSTGVLDAIKKARDAGVVVIALDTATDPEDAV---- 134

Query: 126 VPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAA 185
                      G  QG+ +    +    +     VM            R  G ++     
Sbjct: 135 DATFATDNKAAGVAQGKWV----KAALGNTPPQVVMLDGTPGGTVDTFRHDGFLEGFGLT 190

Query: 186 GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK 245
                +I      + D   A  A  ++L + P V    +  +N+    G  +A +  G  
Sbjct: 191 DNSP-EIVGQENTNGDQTKAQTAMENLLQRAPGVN--ALYTINEPAAAGAYQAIQAVGR- 246

Query: 246 AADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTE 305
           A  +    I+G    + ++  +A     +++  P        + +  +     +P  F  
Sbjct: 247 ADQVTIGSIDGS--CTGVADVKAGKIGATVMQFPAKMAELGVQAVVKFAEDGTKPSGF-N 303

Query: 306 VTDVVLIT 313
            T   LIT
Sbjct: 304 DTGSELIT 311


>UniRef50_C0EIT8 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum
           DSM 5476 RepID=C0EIT8_9CLOT
          Length = 338

 Score =  112 bits (280), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 54/278 (19%), Positives = 101/278 (36%), Gaps = 16/278 (5%)

Query: 24  ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAK 82
           E L  G+ V   ++ +FQ   K       +LG E+       D  + +    +L  SG  
Sbjct: 47  EKLTFGWSVYTRDQTFFQQLEKGVVDKATELGIEIKTHDQKNDSNEMVTGCTNLINSGVD 106

Query: 83  GFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQ 142
             ++C   P+    IV  A   D+ VI  D    ++    +     ++      G+  G 
Sbjct: 107 ALIVCPCKPEAMGNIVTLAHQKDIPVIITDIGDGDSDKDAI-----IISDMKAGGQMAGV 161

Query: 143 ELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDI 202
              + ++++     E A++    + +  A+RR  G  + ++ AGF    + +    ++  
Sbjct: 162 YTAELLKEKSITSGEVAIIKCEESAVY-AQRRNEGYKEEIEKAGF---TVAKELVANSKQ 217

Query: 203 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSE 262
              +     +L  +P++    +   ND    G   A +  G    D+I  G NG D    
Sbjct: 218 EEGYTVMKDILASNPDI--VAVFAANDPMAAGAASALQEAG--KTDVIVTGFNGDD--IA 271

Query: 263 LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300
           L         G++       G K  E+    V     P
Sbjct: 272 LEYIADGKMMGTVAQDVLGIGAKGVELAKLAVEGKDIP 309


>UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM
           15053 RepID=C0C0J1_9CLOT
          Length = 333

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 62/329 (18%), Positives = 116/329 (35%), Gaps = 36/329 (10%)

Query: 2   HKFTKALAAIG----LAAVMSQSAMAE----------NLKLGFLVKQPEEPWFQTEWKFA 47
            +F  A   +     LAA  S     +          ++K+ F + +    +++  W   
Sbjct: 3   KRFLAAFLCLTMCLSLAACSSGEKEKKGSDSGDKKEESVKVAFSIPEMFSTFWEACWYGF 62

Query: 48  DKAGKDLGFEVIKIAVP-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDM 106
           +K  K+ G+E   +    D E  ++ + S    G     +   + +     +       +
Sbjct: 63  EKQAKEYGWEATLLDPQGDLELQISQLQSQVTKGVDAIGVAPIENEAIGPALTTVNEAGV 122

Query: 107 KVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITAN 166
            V  VD +    +G+ + T   +     K GE   ++L K+  +      +  V+ I   
Sbjct: 123 PVFCVDRR---GEGEVVST---LETDNVKAGEAMAEQLVKDYGE------DVDVLIIQGV 170

Query: 167 ELDT-ARRRTTGSMDALKAAGFPEKQIYQVPT-KSNDIPGAFDAANSMLVQHPEVKHWLI 224
             DT    RT G  + L+   +    I   P+        A     + L  +P++   +I
Sbjct: 171 LSDTPTLDRTQGVKNVLEK--YENITIVGEPSAGEYSNEAALATTKNFLETNPDLD--VI 226

Query: 225 VGMNDSTVLGGVRATEGQGF--KAADIIGIGINGVDAVSELSKAQATG-FYGSLLPSPDV 281
               D+ V G V A +  G   K  +   +GI  VD   E+ K    G   G+    P  
Sbjct: 227 FTCTDALVPGIVAALKEAGKTGKVGEENHVGIYSVDGAGEVLKLIEDGTVDGTFSQYPIQ 286

Query: 282 HGYKSSEMLYNWVAKDVEPPKFTEVTDVV 310
            G  + + +  ++       K     DVV
Sbjct: 287 FGIDTVKSMKTYLDGGKVEEKVYYNGDVV 315


>UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n=1 Tax=Rhizobium
           sp. NGR234 RepID=C3KM03_RHISN
          Length = 312

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 46/313 (14%), Positives = 97/313 (30%), Gaps = 7/313 (2%)

Query: 11  IGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTL 70
           IG  A+   ++ A    +G  +   +           D+A K      ++ A  D  K L
Sbjct: 6   IGTTAMFLAASSAYAGDIGVTIASNDTFLAVMVQAMKDEAAKTNQPLQVEFADADVNKQL 65

Query: 71  NAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVM 130
           + I +  A+     ++   +      I   A    + ++ V++   +           + 
Sbjct: 66  SQIQNFIAAKVDAIIVNVVESTATPTITKMAADAGIPLVYVNNTPSDLDQLGPKAA-FIG 124

Query: 131 MAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEK 190
                 G  Q +E+ + +++ G       ++         A +R+    D +        
Sbjct: 125 SQEIDAGTLQAKEVCRVLKEEGKTEDAGILIIQGVLAQHAAEQRSKAVHDVVATPECNFM 184

Query: 191 QIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADII 250
           +I    T   D   A D   + +      K   ++  ND   LG V + +  G++  D+I
Sbjct: 185 KIIDEQTAQWDPVKAQDLMTNWITA--GHKPVAVLSNNDDMALGAVNSLKAAGWEMKDVI 242

Query: 251 GIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVV 310
             GI+       +   +      ++       G  S +        +             
Sbjct: 243 VAGIDATK--EAMHYVKTGDLDATVFQDAVGQGAGSVDAAIKLAKGEKVESPVW--IPFE 298

Query: 311 LITRDNFKEELEK 323
           L+   N    L K
Sbjct: 299 LVNAANVDTYLNK 311


>UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Halothermothrix orenii H 168 RepID=B8CWP1_HALOH
          Length = 320

 Score =  112 bits (279), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 47/283 (16%), Positives = 98/283 (34%), Gaps = 20/283 (7%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTLNAID 74
                +E  ++    K   + ++ T    A+ A K+LG E++        D  K +N I+
Sbjct: 23  GDVQASEKYQILVSPKGLSQSYWLTVKAGAEAAAKELGAEIVWRGPAQETDVAKQVNVIN 82

Query: 75  SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134
                     V+   D       + +A    + VI +D             +  +     
Sbjct: 83  DFVNKKIDAIVVAATDANALIPPLKRAHEAGIPVITIDSGI-----NADFPISHIATNNK 137

Query: 135 KIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194
           +  ++  + L   + K+G       V         T+  R  G  + +  + +    +  
Sbjct: 138 EAAKKAAEVLANIIGKKGEVACIPFVAGAA-----TSIARENGFKEGI--SNYKNIDLVA 190

Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254
           V    +D   A     ++L  HP +K   I   N++  +G  RA + +G  A D+I +G 
Sbjct: 191 VQYSQSDYATAMKVTENILTAHPNLKG--IFAANEAGAVGAARALKARGKTA-DVILVGF 247

Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
           +      +  K         ++  P + GY+  +     +  +
Sbjct: 248 DAAQTEIDAMKE--GIIDALIVQRPYMMGYEGVKNAVAALEGE 288


>UniRef50_C0D949 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme
           DSM 15981 RepID=C0D949_9CLOT
          Length = 352

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 62/298 (20%), Positives = 106/298 (35%), Gaps = 16/298 (5%)

Query: 26  LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLAASGAKGF 84
           LK GF        W  T  +   +  + +GFEV+   A  D    +  ++ L A G    
Sbjct: 64  LKAGFAACHYTNDWNITNCETVCEDLRSVGFEVVWNEANNDTATQIANVEDLLAQGIDLL 123

Query: 85  VICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQEL 144
           VI   + +     +   R   + VI +D +  +    P   V  +M      GE  GQ L
Sbjct: 124 VIKPKEEEGLIPALEACRDAGVPVICLDRKVSD----PSLYVTAIMTDNVAGGETVGQWL 179

Query: 145 YKEMQKRGWDVKESAVMAITANELDTAR-RRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203
                          ++ I      T +  R+ G  + +    + + QI       N   
Sbjct: 180 VDHY------PDGCKIVEIVGTAGSTGQIERSKGLSNVIDK--YDQIQIISSQVGDNMRS 231

Query: 204 GAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSEL 263
            A     +M+  + +    +IV  ND   +G ++A  G G +    I I   G D  SE+
Sbjct: 232 EAQTVTENMIQAYGKEGIDVIVTQNDEMAMGCLQALWGLGIEPGQEITICTIG-DGNSEV 290

Query: 264 SKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEEL 321
            +    G  G +  S    G +  E+ +       +  K+    +    T +N  +EL
Sbjct: 291 VEQVKDGTVGCVYESTPYLGPQVLEVAHKIFVTKEDVEKYIPSAN-RFFTIENADQEL 347


>UniRef50_A8RM26 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8RM26_9CLOT
          Length = 369

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 52/292 (17%), Positives = 103/292 (35%), Gaps = 12/292 (4%)

Query: 26  LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDSLAASGAKGF 84
            K+ +     E             A +  G + ++     D  + +   D+   +G   +
Sbjct: 81  YKIAYANWNDENSISIIVRDSVLDACRYYGVDCMVFDNKQDANQAITNCDTAIQAGVDYY 140

Query: 85  VICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQEL 144
           +    D  + +AI  K     + +I++  +  +         P   +   K G   G+ L
Sbjct: 141 LNFNQDESINAAIADKLEKAGIPMISIQTKARDG------IDPEYHIDNYKFGTLCGELL 194

Query: 145 YKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPG 204
            KE  +R  D K    +A          +R  G  D++  A  P+ +++++ T   D   
Sbjct: 195 IKEAGERWPDEKPVLFVAGHPESGVNFIQRAEGCKDSVLEA-LPKTEVFEIST-EGDPEI 252

Query: 205 AFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELS 264
                   L  HP  K  ++    D   +G + A +  G    D+I           E  
Sbjct: 253 TRQRTADFLTAHPNGK-IMMWCHIDQNTMGMLAAVKAAGR-VDDVIITSCGANPVAFEEL 310

Query: 265 KAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316
           K   +   G++    +  G+    M+   +    +PP  T V  + +IT++N
Sbjct: 311 KKDDSPILGTVAQFSERFGWDLLPMVIEHLNDGTKPPLET-VPPLDIITKEN 361


>UniRef50_Q7MCP2 ABC-type sugar transport system, periplasmic component n=4
           Tax=Proteobacteria RepID=Q7MCP2_VIBVY
          Length = 318

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 55/296 (18%), Positives = 106/296 (35%), Gaps = 15/296 (5%)

Query: 10  AIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI-AVPDGEK 68
           A  +A   S    A   ++ ++V     P++Q  W   +   K LG+E + + A  D + 
Sbjct: 7   AFCVALFFSPWLSASQ-QIVYMVSDLRIPFWQIMWGGIENEAKQLGYEAVVLSAENDAKT 65

Query: 69  TLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPL 128
            L  I    A    G ++   +      I+  A   ++ V+  D       G     V  
Sbjct: 66  ELENIIKAIALKPDGIILSPTNSSAAVTILKMAEQANIPVVISD--IGTEGGTF---VSY 120

Query: 129 VMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFP 188
           +         +  Q L   M+ +GW   E  V+AI   +      RT G ++A K  G  
Sbjct: 121 IESDNFSGAFQLAQILAAAMKAKGWQNGEVGVVAI-PQKRKNGIERTEGFVEAAKQQGMR 179

Query: 189 EKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAAD 248
              I     K       F    +ML +H +++   + G         + A +  G +   
Sbjct: 180 IAAI--KQQKDFSYQETFIFTQTMLREHRKIRAIWLQGS--DRYQAALDAIDSLG-QRDK 234

Query: 249 IIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFT 304
           ++ I  +      ++ ++Q     GS +  P + G ++   L+ ++       +  
Sbjct: 235 VLLICFDAEPEFIDMIRSQQ--LVGSGMQQPFLMGERAMNSLHQYLLGHTVAKEQQ 288


>UniRef50_UPI00016C56B8 bifunctional carbohydrate binding and transport protein n=1
           Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C56B8
          Length = 349

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 109/328 (33%), Gaps = 24/328 (7%)

Query: 8   LAAIGLAAVMSQSAMA-ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE------VIK 60
           L    +  + S  A   E   +  + K      +Q+  + A++   DL  E      VI 
Sbjct: 8   LLLAAVLPIASGCARRGEEYTIVVIPKGLSHEHWQSVRRGAERCAADLEAEDGTRVRVIF 67

Query: 61  IAVP---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117
                  D  + +  +D   A+GA   V+        +A V +A    + V+ +D    +
Sbjct: 68  DGPLRERDALEQIRIVDRRVATGASALVLAPQHSATMTACVKRAADAGVPVVIIDSGLDD 127

Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177
               P   V  V       G   G+ L +E+Q+R  D K   ++   A        R  G
Sbjct: 128 ----PNHFVKYVATDNYNGGRLAGRHLIRELQRRRKD-KPKLILFRYAVGSQATEDRERG 182

Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANS-MLVQHPEVKHWLIVGMNDSTVLGGV 236
             D +K      + +            A   A   +L    +V    I   N+S+  G  
Sbjct: 183 FEDEVKERCPGAEWLSTDKYAGATRDSAMREAGPLILQFGNQVDG--IFAPNESSASGTA 240

Query: 237 RATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296
                QG     +  +  +G   +  L   Q     GS+L  P   GY S+      +  
Sbjct: 241 DVLRAQGLNQ-KVALMAFDGSKPL--LQSIQQGDVIGSILQDPYRMGYLSAWYCVRHLRG 297

Query: 297 D---VEPPKFTEVTDVVLITRDNFKEEL 321
           +       + +E T   LIT +N     
Sbjct: 298 EDMNNGRREMSEGTGEYLITAENVTSAF 325


>UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpetosiphon
           aurantiacus ATCC 23779 RepID=A9AX36_HERA2
          Length = 335

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 60/315 (19%), Positives = 104/315 (33%), Gaps = 25/315 (7%)

Query: 13  LAAVMSQSAMAENL------KLGFLVKQPEEPWFQTEWKFADKAGKDLG----FEVIKIA 62
           LA   + SA   +       K+G ++K     +FQ     A++  +       F    I 
Sbjct: 34  LAGCGTTSATPVSTATPTKPKIGLVMKSLSNEFFQQMQAGAEEYARQNATRFDFTATGIN 93

Query: 63  VP-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121
              D    + + + L        V+   D     A VAKA    + VI +D     A  K
Sbjct: 94  DERDFATQIASFERLVNEQYDVIVLAPADSIALVAPVAKAVKAGIVVINIDVALDEATKK 153

Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181
                        + G +   E+  +    G  V     +     E D A +R  G  DA
Sbjct: 154 AAGIDLAFFGPDNRAGAKMSGEVLAKALGAGGKVA----VLEGNPEADNAVQRRLGFDDA 209

Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241
           +         +    +   +         + L ++P+++   I+  NDS   G V+A E 
Sbjct: 210 IADGS---LNLVVAESGHWETSEGQSITAAWLKKYPDLQG--IMCANDSMAFGAVQALEA 264

Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301
                  I  +G + + AV  L K        ++            +  Y  +  +    
Sbjct: 265 ANL-LDKIKVVGFDNIPAVQPLIKD--GKMLATVEQYGAQMAAIGMDYGYRTLKGEKFSG 321

Query: 302 KFTEVTDVVLITRDN 316
                T++ LIT+DN
Sbjct: 322 WIR--TELKLITKDN 334


>UniRef50_C6D2L0 Periplasmic binding protein/LacI transcriptional regulator n=10
           Tax=Bacteria RepID=C6D2L0_PAESJ
          Length = 333

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 45/284 (15%), Positives = 98/284 (34%), Gaps = 19/284 (6%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP---DGEKTLNAID 74
              A  + + +  + K  +  ++Q     A+KA  +   E+           +K +  + 
Sbjct: 38  GTKASGDKIYIPIISKGFQHQFWQAVKAGAEKAATEFNVEITFEGPETEAQVDKQIEMLQ 97

Query: 75  SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134
           +              D +    ++ KA+   + VIA D    +       +         
Sbjct: 98  AALDKKPSAIGFAALDSQASVPLLQKAKAAGIPVIAFDSGVDSDIPITTAS-----TNNV 152

Query: 135 KIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194
                   ++ + +   G    E  V+      + T   R  G ++ +K   +P  +I  
Sbjct: 153 AAAALAADKMAELIGGEG----EIGVIVHDQTSV-TGVDRRDGFVNRIKE-KYPNIKIVD 206

Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254
           +     D   + D A +M+  HP +K +   G N+ + +G + A      K   I  IG 
Sbjct: 207 IQYGGGDHLKSTDLAKAMIQAHPNIKGF--FGSNEGSAVGVINAVTEL-KKEGQITVIGF 263

Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
           +   A  +  K  +    G++  +P   GY++ +     +  + 
Sbjct: 264 DSGKAQIDAIK--SGVMAGAITQNPVGIGYETVKAAVEAIRGEK 305


>UniRef50_A8RTB0 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8RTB0_9CLOT
          Length = 358

 Score =  111 bits (278), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 44/274 (16%), Positives = 83/274 (30%), Gaps = 14/274 (5%)

Query: 27  KLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDSLAASGAKGFV 85
           K+GF     +  W   +     K  +  G+E V+  A  D  K ++ ++ L         
Sbjct: 72  KVGFSELAIDGAWRVAQVDSMQKEAESRGYEFVMSNAELDTAKQISDVEDLLTQDLDFLF 131

Query: 86  ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145
           I   D +     +  A+   +  I +D +     G       L           QG+   
Sbjct: 132 IAPIDMEAIMPAIEAAKAKGVPTILLDREANGTPGVDYICTILSNYI------WQGEACA 185

Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205
             + + G       V           R R  G    +K   +   +I    +       A
Sbjct: 186 DWLSENGGADSYKIVQITGKVGGSDVRDRQAGFETGVKK--YENMEIVATQSGEWSRTEA 243

Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF-KAADIIGIGINGVDAVSELS 264
                +++         ++   ND   LG V A +  G     D+  I I+G     E  
Sbjct: 244 QKVMQNIIQSTGG-DFNVVYCHNDEMALGVVLALKAAGMNPGTDVKVIAIDGQAEAVEAI 302

Query: 265 KAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
            A       +  P     G  + + +  ++ ++ 
Sbjct: 303 IAGEMNCIATCNP---RFGPVAFDTMEKYLNEEK 333


>UniRef50_C5ESA7 Predicted protein n=2 Tax=Clostridiales bacterium 1_7_47FAA
           RepID=C5ESA7_9FIRM
          Length = 328

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 50/326 (15%), Positives = 106/326 (32%), Gaps = 20/326 (6%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENL--KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV 58
           M K    L  + +  + + +   +     +  +     E +       A++  +  G++ 
Sbjct: 11  MKKKVLGLLLVCMMILSTTACAPKEKQKTIAIVPWSMAETFAVDFSHAAEEQIEGRGWKA 70

Query: 59  IKIA-VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117
           + +    D       I++L      G +    D    + IV KA+   + ++  D     
Sbjct: 71  VIVDPKGDWGSEYTIIENLITQQVDGIIYTAIDADGANDIVKKAQEAGIPMVGYDCLASA 130

Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177
                      V     K G+   ++  + ++ +        V+      + ++  R  G
Sbjct: 131 GTEDAA-----VRYDDYKGGQMAAEQAMEALEGKK---DAKIVVFEDDPSIASSTLRVNG 182

Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237
            ++   A  +P+ ++    T+     G +  A  M+  HPE     I        +    
Sbjct: 183 FVE-FLAENYPDVEVVLNRTQDKTSDGCYIWATDMITAHPETD--AIFCYWAECAMATYN 239

Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATG--FYGSLLPSPDVHGYKSSEMLYNWVA 295
           A +  G     I  IG +  +   E  K    G   Y S   SP     +   ++ +  A
Sbjct: 240 ALQDAGNTRTKI--IGYDATEEQQETMKKDGEGGQLYASPGMSPSRMATQCVVLMEDIFA 297

Query: 296 K--DVEPPKFTEVTDVVLITRDNFKE 319
                  P+     D VL+   N ++
Sbjct: 298 DKYKRNGPEDIYEMDPVLLNVHNAED 323


>UniRef50_Q7P137 Probable ribose ABC transporter, substrate binding protein n=1
           Tax=Chromobacterium violaceum RepID=Q7P137_CHRVO
          Length = 313

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 61/298 (20%), Positives = 103/298 (34%), Gaps = 30/298 (10%)

Query: 27  KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV---IKIAVPDGEKTLNAIDSLAASGAKG 83
           ++G  V   + P++Q   + A +A   L   V    + A     +    +  L A     
Sbjct: 25  RIGISVGALDNPFYQALARGAVQAAHRLNPGVRITSQSANFTLGQQQQQLRQLIAQKVDL 84

Query: 84  FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143
            ++   D    + +V +AR   + V+AVD    +  G        V       GE   + 
Sbjct: 85  ILLGAVDSNAVAPLVRQARAAGITVVAVDVDAPDVDGT-------VKSDNHLAGEIVCRY 137

Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV-PTKSNDI 202
           L + ++ RG       +M      + +   R  G   AL A  FP  +            
Sbjct: 138 LAQRLRGRG------TLMIQGGPPVTSVSDRIAGCHAALAA--FPHIRAVDDGLNAQGSS 189

Query: 203 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSE 262
            G   A    L + P++    +  +ND   LG  +A    G K      + I  VD   +
Sbjct: 190 LGGQRAMQQALQRWPDM--AAVFTINDRQALGVEKALLAAGRKQ-----VLIGSVDGSPD 242

Query: 263 LSKA--QATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318
           + +A         S   SP + G ++ ++       D      T    V L+TRDN  
Sbjct: 243 IERALRLPGQIVVSASQSPYLLGREAVKLGVKLRRGDTSVRHVT--VPVGLVTRDNLS 298


>UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Actinomycetales RepID=D2PNL9_9ACTO
          Length = 335

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 52/307 (16%), Positives = 106/307 (34%), Gaps = 18/307 (5%)

Query: 24  ENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEVIK-IAVPDGEKTLNAIDSLAASGA 81
               +G       EP+ Q        A  ++  FEV    A  D  K +  +++      
Sbjct: 45  GKYVIGMSQANVAEPYRQRMDDDIKAAAAEVPQFEVKFADAAQDNAKQVADVENYITQQI 104

Query: 82  KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141
              +I   + K  +A+V KA    + V+ +D +              +     +IG   G
Sbjct: 105 DLLIISPNEAKPLTAVVKKAYDQGIPVLVLDRKVEGD-----AYTGFIGGDNVQIGTEAG 159

Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201
           + + +++   G +V E   +A    +      R  G    +KA   P+ ++    +    
Sbjct: 160 KYVAEKVLPNGGNVVEIKGLAGATPQA----ERNQGFATGIKAN--PKVKVVATASGDWL 213

Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261
                   +++L  +P++   ++   ND    G   A +  G +  ++  IGI+ +   S
Sbjct: 214 REKGQAQMDALLKANPKID--VVYAHNDPMAEGAYLAAKAVGREK-EMKFIGIDALPIPS 270

Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEEL 321
              KA   G   +    P   G ++       +       K   +    LI + N  +  
Sbjct: 271 GGIKAVEQGRLTATFTYPTN-GKEAIAAAKKLLVDCGTIEKTQTL-PTRLIDKTNAAQIY 328

Query: 322 EKKGLGG 328
            ++   G
Sbjct: 329 AQENPTG 335


>UniRef50_A9BGQ4 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Petrotoga mobilis SJ95 RepID=A9BGQ4_PETMO
          Length = 342

 Score =  111 bits (277), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 113/303 (37%), Gaps = 17/303 (5%)

Query: 20  SAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPD---GEKTLNAIDSL 76
           +  + ++ + F+VK  E  ++Q     A KA    G E I           + ++ +++ 
Sbjct: 38  AIQSSDMTIFFIVKASENEFWQIVLDGAQKAANHFGVEFIHQEATSESEVSRQVSILETA 97

Query: 77  AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136
            ++     V+           + +A    + VI +D           + V  +      I
Sbjct: 98  ISTNPDAIVLAPTVADALVPGIERAMDSGIPVIIIDSMANTD-----NYVSFLGSDNYTI 152

Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196
           G+R   EL K ++++              + + +   R +G +D ++ A +P+ ++  V 
Sbjct: 153 GQRSADELAKALEEKNGSPSGKVAAITYMSGVGSLEARISGFLDRIEEA-YPDIEVVSVR 211

Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256
                +    +    +L  +P++    +   N  T    VRA + QG    D+  + ++ 
Sbjct: 212 DAMGQVGNTINITLDLLTAYPDLDG--LYANNQMTGDDMVRALDMQGRN--DLAAVAVDA 267

Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316
                E+   +       L+  P V GY      Y  +A++  P      T +++IT ++
Sbjct: 268 S--AQEIWGLENGYLDSVLVQQPWVMGYAGV--AYAVMARNGVPLAKNVDTGILVITPES 323

Query: 317 FKE 319
              
Sbjct: 324 LAS 326


>UniRef50_B1YL86 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Exiguobacterium sibiricum 255-15 RepID=B1YL86_EXIS2
          Length = 317

 Score =  111 bits (276), Expect = 4e-23,   Method: Composition-based stats.
 Identities = 40/279 (14%), Positives = 84/279 (30%), Gaps = 14/279 (5%)

Query: 28  LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGE-KTLNAIDSLAASGAKGFVI 86
           +GF +   +  + Q          K   +E +     +        I            I
Sbjct: 37  VGFTIVNDKHEFAQRLINAFKAEAKANKYEALVATSQNSRISEREQILEFVHLKVDAIFI 96

Query: 87  CTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYK 146
            T D     + + +A+   + V A+D    +        V  +      IGE+    +  
Sbjct: 97  TTLDDVYIGSAIEEAKKAGIPVFAIDRMIRSD-----AVVSSITSNNQMIGEQLASYIKN 151

Query: 147 EMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAF 206
           E+ K+        V       + T   R  G +  ++    P   I    + + D   + 
Sbjct: 152 ELIKQTGRSTGRIVEITGTANVYTTNERHRGFLKGIENE--PTLSIVDSVSGNYDPVTSE 209

Query: 207 DAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKA 266
                ++     +    +   ND   +G + A +         I +GI+G  A+ E    
Sbjct: 210 RVMRQVIDS--GIPFDAVYCHNDDIAMGVLEALKKAKISGK--IVVGIDGNRAILEAVDM 265

Query: 267 QATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTE 305
           ++     +++ S +     +   L         P +F  
Sbjct: 266 KS--MDATVVQSAEEMMKVAFSALKLHTKNKKIPDRFYT 302


>UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8S3L7_9CLOT
          Length = 378

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 61/300 (20%), Positives = 114/300 (38%), Gaps = 24/300 (8%)

Query: 27  KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK---IAVPDGEKTLNAIDSLAASGAKG 83
           K+G L+      ++ T     ++A +DLG E+      A  D +  L+A++++   G   
Sbjct: 91  KIGVLISSTSNEFWGTMKTRYEEAAEDLGIEIRVFEADAEDDTQGQLDALNTMVTMGFDA 150

Query: 84  FVICTPDPKLGSAIVAKARGYDMKVI----AVDDQFVNAKGKPMDTVPLVMMAATKIGER 139
            ++   D       +  A   ++ VI     VD + +   G  +D    V        E 
Sbjct: 151 IILSPIDGTNLIPGIVAANEAEIPVINLGPGVDAEALADAGGHLDGKITVNF------EE 204

Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199
           QG  +  +M  R  D  + A++A       +   RT G+    +       ++       
Sbjct: 205 QGSTVANDMISRMEDGGKVAILAGLEGAGQSVG-RTNGAKTVFENTE--GVELVAAQACD 261

Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259
            D   A++A   +L  HP++K   I   ND+  L  V+A +  G K  D++  G++    
Sbjct: 262 WDTEKAYEATKDILTAHPDLKG--IFACNDNMALAAVQALQEMGNK--DVMVYGVDYTTD 317

Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
                  +     GS+  S  ++   + EM    V              + L+T+DN  +
Sbjct: 318 AKAAI--EDGTMMGSMTYSSAIYTKAAEEMAMLIVQGKTFKDPVY--LPLTLVTQDNVAD 373


>UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme
           DSM 15981 RepID=C0CUK5_9CLOT
          Length = 336

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 40/297 (13%), Positives = 100/297 (33%), Gaps = 23/297 (7%)

Query: 24  ENLKLGFLVKQPEEPWFQTEWKFADKAGK---DLGFEVIKIAVP-DGEKTLNAIDSLAAS 79
           +     F+VK  +  +  +    A+ A     ++  + I    P   E+ +  ++     
Sbjct: 54  KTYNFVFIVKSMQFSFMLSMIDGAEAAAALVPNINIKCIGPETPYSVEEQIQLVEQAITD 113

Query: 80  GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139
           GA   +I   D       + KA    + +   + +           +  + +    +G  
Sbjct: 114 GADAILITPADSTGIVPAIEKANAAGIPIATPNTKAYGGD-----VLTWIGVDNYTVGYE 168

Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199
            G  L + ++  G       V+        T+  R  G +DA K   +P  ++       
Sbjct: 169 LGTALCEALEGTGK-----VVLIEGTAGNSTSTERVDGYLDAFK--NYPGIELLDSQPAD 221

Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259
            +         + L ++PE+    +  +N    +G + A +  G    +++ +  +  + 
Sbjct: 222 FNREKGMTVMENFLQRYPEIDG--VGSINKDMTMGAIEACKAVGRDK-EMVQVTFDVDND 278

Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316
             +   A      G+     +     ++ +    +A +       +   + L+T+DN
Sbjct: 279 CLDAIDAGDILITGA----QEEKSQIANAIYACLLACNGYKVAPEQYIPMTLVTKDN 331


>UniRef50_B5GKD2 D-ribose ABC transporter permease protein n=1 Tax=Streptomyces sp.
           SPB74 RepID=B5GKD2_9ACTO
          Length = 432

 Score =  111 bits (276), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 61/313 (19%), Positives = 114/313 (36%), Gaps = 20/313 (6%)

Query: 15  AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAI 73
              S      +  +G        P+F    K      K  G EV+   A  D  K  + +
Sbjct: 136 GAASGGKGDGDYTVGMANFTLSGPYFVGMDKAVKARAKKKGVEVVSTDAGGDAAKLASNV 195

Query: 74  DSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAA 133
           + L +      +I     +   A++   +      I VD +F +           +    
Sbjct: 196 EDLLSKNVDAVIISGGPLESAPAVLNALKSAGKPAILVDRKFRSGT-----YASWIGPDN 250

Query: 134 TKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIY 193
             IG + G+ L  ++ K        A++     +      RTTG   AL AAG    ++ 
Sbjct: 251 EAIGRQDGEFLAAKLGKD----ATVALIKGGPADNSIGLARTTGVKKALDAAG---IRMV 303

Query: 194 QVP-TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGI 252
           + P   +    G      S+L  H ++    +   ND+  LG  RA +  G +  +I+  
Sbjct: 304 EGPDYGNWASDGGLTVMESLLASHKDLD--AVFCENDAMCLGAQRAVKDAGREK-EIVLA 360

Query: 253 GINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLI 312
           G++G  A +  + A    +  + L   D  G    +   + +  D + P+   V D   +
Sbjct: 361 GVDG-QAEALQAIAAGGNYLVTGLNDADQIGSLGLDRAVDIL--DGKKPEKDTVVDSPQV 417

Query: 313 TRDNFKEELEKKG 325
           T++N  +  + +G
Sbjct: 418 TKENAAKYQDMEG 430


>UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-binding protein n=3
           Tax=Rhizobium etli RepID=Q2KAX1_RHIEC
          Length = 307

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 62/318 (19%), Positives = 108/318 (33%), Gaps = 26/318 (8%)

Query: 10  AIGLAAVMSQSAMAEN-LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI--KIAVPDG 66
           AI LA + + SA A +   +G+      + +         +A K      +    A  D 
Sbjct: 12  AISLATISTGSAFAADKFVVGYANMADTDVFVMARKNAFIEASKSDPAVEVNFSDANNDV 71

Query: 67  EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTV 126
            K L+ ID+  A      V+   D +     V KA    + VIA+  Q    K       
Sbjct: 72  SKQLDQIDNFIAQKVNAIVVVPVDYQGIVPGVEKANQAGIPVIALGIQSAGGKYT----- 126

Query: 127 PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAG 186
             V       G  QG+ + + + K         +       L   + R  G  DAL  + 
Sbjct: 127 -FVGSKNIDAGRLQGEYMKEHLPK-----GAKILYLEGTPGLSHTQERKKGFEDALGRS- 179

Query: 187 FPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA 246
             +       + + D           +   P+     IV  ND   LG + A +G     
Sbjct: 180 --DVTTLASLSANYDRAEGMKVTEDWIQSFPKFD--AIVAANDQMALGALEALQGA---- 231

Query: 247 ADIIGIGINGVDAVSELSKAQATGFYG-SLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTE 305
             + G+ I+GVD  ++   A   G    ++          + E++      +  P +  +
Sbjct: 232 DRLKGVMISGVDGTADALNAIKAGTMSQTIFQDAAGQAKAAFEVVEGLKKGEDAPAE--K 289

Query: 306 VTDVVLITRDNFKEELEK 323
           +     IT+DN  +  +K
Sbjct: 290 LVPFASITKDNVGQYAKK 307


>UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC
           35704 RepID=B0NEL2_EUBSP
          Length = 321

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 57/307 (18%), Positives = 107/307 (34%), Gaps = 23/307 (7%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSL 76
           S+S   + + +GF  K   + + +     A+ A K+ G ++I   A  D  K +N  ++L
Sbjct: 29  SKSGGEDKITIGFSSKTNSDTFVKAIADAAEDAAKEQGVDLIMADAEGDVNKQINDCETL 88

Query: 77  AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136
            A      ++   D +  + +V+ A   D+ +I  +    +      +    V     + 
Sbjct: 89  IAQQVDALIVIPQDVEGSAPVVSMANEADIPIIICNGDIADK-----NYTAFVGCTDQES 143

Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARR-RTTGSMDALKAAGFPEKQIYQV 195
           GE  G                S +  I      + +  R  G  +      F   ++   
Sbjct: 144 GEILGTWF------NDNVEHGSQICIIEGPMGQSGQVGRYAGFEEVGMLDNF---EVLSC 194

Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255
            T +     A   A   L  + + K   IV  ND   +G + A +  G    D++  G++
Sbjct: 195 QTANWKRDEAMALAEDWLTTYGD-KLKAIVCENDDMAMGALSACKAAGRT--DVVIGGVD 251

Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315
           G++   +  K    G   S+L      G  + E+    +  +              IT D
Sbjct: 252 GLEDAIQAVKDGELGV--SVLQDSAGQGEGAVEVALQIINGEDYQKD--TRIPFHAITSD 307

Query: 316 NFKEELE 322
           N    LE
Sbjct: 308 NVDAYLE 314


>UniRef50_C5ET05 D-ribose-binding protein n=1 Tax=Clostridiales bacterium 1_7_47FAA
           RepID=C5ET05_9FIRM
          Length = 336

 Score =  110 bits (275), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 46/288 (15%), Positives = 86/288 (29%), Gaps = 21/288 (7%)

Query: 14  AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK--IAVPDGEKTLN 71
            A  +Q    +   +  L     E +       A+K   +LG   +       D +K + 
Sbjct: 42  TAAAAQGEGKDGYTIAVLAWSQAEEFGVDIISGAEKKAAELGNVTVVKPDPAGDMQKEIA 101

Query: 72  AIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMM 131
            ++ L   G     +   D       + K R   + ++  D                V+ 
Sbjct: 102 ILEDLIQQGVDAICVAPVDANAIVPYIDKVREAGIVLVDYDID------TEAQCDAKVLS 155

Query: 132 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ 191
                G      L +EM   G       ++      + TA  R  G  D +     P  +
Sbjct: 156 DNAAGGAMAADYLVQEMGTEGK-----VLILTEVPGVTTAEERIAGFKDRMAEIA-PNVE 209

Query: 192 IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 251
           + +  +             +ML  HP++    I        LG   A +    +  D++ 
Sbjct: 210 MVEQLSNG-TRDTHRATTENMLQAHPDITG--IFCFMGDNSLGAYTACKTNNRQ--DVLI 264

Query: 252 IGINGVDAVSELSKAQA--TGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
            G +      ++ K          S+   P   GY + E  YN +  +
Sbjct: 265 AGYDATPEQLDIMKNDGPDCNLICSVALYPKKIGYVALETAYNILEGE 312


>UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE
          Length = 364

 Score =  110 bits (274), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 109/308 (35%), Gaps = 29/308 (9%)

Query: 24  ENLKLGFLVKQPEEPWFQTEWKFAD---KAGKDLGFEVIKIAVP-----DGEKTLNAIDS 75
             +KLG + K  E  +++T  +  +   +  K+ G+ +           D +  L+ ++ 
Sbjct: 69  GEIKLGSVAKAFENEYWRTLKEGEELGTQKFKENGYNITLDMKSAQGEGDEQGQLSIVED 128

Query: 76  LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135
           +        ++           V KA+  ++ VI V+D  +       +    V   A  
Sbjct: 129 MINKKYTALLLSPISDGNLVPGVEKAKKNNIPVINVNDGIIK------NADIFVGPKAIM 182

Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195
            GE   + + K++   G        + I   +   AR+RT G  + +K+      +I + 
Sbjct: 183 NGELAAEWISKKIGGEG-----EVAIVIGMPKAFAARQRTLGFENWMKSNA-AGVKIVEK 236

Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255
                D   A D A   + ++P +K   I   ND   LG   A         DI+ +G++
Sbjct: 237 QNADWDRAKAKDLAEIWIKKYPNLK--AIFCNNDVMALGVQEAVNA---SKRDILVVGVD 291

Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315
           G+         +      ++   P   G  + EM    +     P      T   LI   
Sbjct: 292 GIK--EAYESIRKGEMDATVDSFPLYKGQIAVEMALRSLGGQQLPRVIW--TPQALIDST 347

Query: 316 NFKEELEK 323
           N  E  EK
Sbjct: 348 NVNEPSEK 355


>UniRef50_C9LY79 Periplasmic ribose-binding protein n=1 Tax=Selenomonas sputigena
           ATCC 35185 RepID=C9LY79_9FIRM
          Length = 342

 Score =  110 bits (274), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 46/254 (18%), Positives = 84/254 (33%), Gaps = 11/254 (4%)

Query: 15  AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP-DGEKTLNAI 73
                 +    + +G+     +  W         +A +D G E+         E  + AI
Sbjct: 31  GSAEPGSGNRKITMGYSQIGAQSTWRAAHTASIKQAAEDAGIELQFSNAELKQENQIRAI 90

Query: 74  DSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAA 133
            S  A                  ++ +A+   + VI VD             +  +   +
Sbjct: 91  RSFIAQKVDIIAFSPIVATGWDEVLKEAKAAKIPVIIVDRDLQTNDDSLY--IMRIGTDS 148

Query: 134 TKIGERQGQELYKEMQKRGWDVKESA----VMAITAN-ELDTARRRTTGSMDALKAAGFP 188
            + G    + L   MQ++G   ++      +  I          RR TG  DA+ A+   
Sbjct: 149 VREGREAFRWLDGYMQEKGKKPRDGGAKFNIAEIKGPAGSSVVERRDTGFRDAMTASPNK 208

Query: 189 EK-QIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA 247
           +  +I      +    G       ML  + + K  ++   ND   LG + A E  G K  
Sbjct: 209 DAYEILVAQNSTFQKDGGKQVMTEMLKNYKD-KIDILFAQNDDMALGAIEAIEAAGLKPG 267

Query: 248 -DIIGIGINGVDAV 260
            DI+ +  +G  A+
Sbjct: 268 QDIVIVSCDGTRAI 281


>UniRef50_B9J8H1 Fructose ABC transporter n=23 Tax=Bacteria RepID=B9J8H1_AGRRK
          Length = 341

 Score =  110 bits (274), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 54/289 (18%), Positives = 102/289 (35%), Gaps = 21/289 (7%)

Query: 25  NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP---DGEKTLNAIDSLAASGA 81
           ++    + K    P+F    + A    K+LG  +   A     D E  + AI+S  ASGA
Sbjct: 27  DVSACLITKTDTNPFFVKMKEGATAKAKELGVTLKSYAGKIDGDSESQVAAIESCIASGA 86

Query: 82  KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141
           KG +I   D K   + V KAR   + VIA+D     A                  G+  G
Sbjct: 87  KGILITASDTKGIVSSVKKARDAGLLVIALDTPLEPADAADATFAT----DNLLAGKLIG 142

Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL--------KAAGFPEKQIY 193
           +   K +  +  D K    + +T ++      R  G M           K     + +I 
Sbjct: 143 EWANKTLGDKAKDAK-IGFLDLTPSQPSVDVLRDQGFMIGFGIDPKDPNKIGDETDPRIV 201

Query: 194 QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIG 253
                + +  G   A  ++L +   +   +I  +N+   +G  +A +  G +   ++ + 
Sbjct: 202 GHDVTNGNEEGGRKAMENLLQKDSSIN--VIHTINEPAAVGAYQALKAVGLEK-QVLIVS 258

Query: 254 INGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302
           ++G      +   +      +    P +      E +  +     +P  
Sbjct: 259 VDG--GCPGVKSVKEGVIGATSQQYPLMMAALGVEAIKKFADTGEKPKP 305


>UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Gluconacetobacter
           diazotrophicus PAl 5 RepID=A9HPK6_GLUDA
          Length = 336

 Score =  110 bits (274), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 61/322 (18%), Positives = 107/322 (33%), Gaps = 20/322 (6%)

Query: 9   AAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFA-DKAGKDLGFEVIKIAVPD-- 65
           A +  AAV    A A +  +  +VK     ++Q   K A D   K   + +         
Sbjct: 30  ATMLCAAVAVGQAHAADRGIAVIVKTANSNYWQNVRKGAADAVAKVENYTMTFQGPTSES 89

Query: 66  -GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124
                +N +           V+   DP      + KA    + V+ +D    ++  K   
Sbjct: 90  AVADQVNMVADAVTQKVAAIVLAPSDPDALVPSIRKAWEAHIPVVLIDSMISDSGAKYYQ 149

Query: 125 TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA 184
           +   +       GE  G+E+   + + G     S V       + +   R  G    +  
Sbjct: 150 S--FLATDNEAAGEALGKEMVDHVGQTGKVAIMSYV-----PGVGSEIGRVGGFRKYI-- 200

Query: 185 AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF 244
           A     QI       + +  A +    +L  +P++K   I   N+ T +G  RA +  G 
Sbjct: 201 AEHSHIQIVGPFYSQSQMALAMNQTTDVLASNPDLKG--IFAANEMTAVGVGRAIQQAG- 257

Query: 245 KAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFT 304
           K+  +  I  +G +   E    ++  F    +      G K  E     +      P   
Sbjct: 258 KSGKLYAIAFDGNE--DEQGFVRSGTFQLLAVQGSYAMGAKGVETAIGVLTG--AKPTKY 313

Query: 305 EVTDVVLITRDNFKEELEKKGL 326
             T VV +T  N      K+ L
Sbjct: 314 VNTGVVFVTSANLDSPEAKQVL 335


>UniRef50_B5CR03 Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC
           29176 RepID=B5CR03_9FIRM
          Length = 332

 Score =  110 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 53/291 (18%), Positives = 97/291 (33%), Gaps = 20/291 (6%)

Query: 29  GFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVIC 87
           GF       P++ T       A ++ G ++ IK    D E+    I  L         +C
Sbjct: 53  GFCGIDMSNPFYATLKDSVQSALEEQGDKLLIKDPAGDAERQNTQIQELIEEDVDAVFLC 112

Query: 88  TPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKE 147
             D K     +      D+ VI +D +   +          V       G   G++L + 
Sbjct: 113 PVDWKKIEPALDALEEADIPVINLDTKVYESGKVAA----FVGSDNRNAGYVCGEDLVER 168

Query: 148 MQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFD 207
                       V+ +    +++   R TG  +A+    F   ++ +     ND+ G   
Sbjct: 169 ------KPDGGQVVIVENLNVNSVCERITGFEEAVSKGAF---EVVKRIQTGNDVSGLKQ 219

Query: 208 AANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQ 267
               +L Q+P++    I+  +D        A    G     +    ++G  A  +     
Sbjct: 220 QVAQVLAQNPDLD--AIMCGDDQMAEQVREAITEAG--QEKVYVYSVDGSPASKKALVEH 275

Query: 268 ATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318
             G  G    SP   G K+ ++    +  +    +  E T    I RDN +
Sbjct: 276 TGGMMGIGAQSPINLGKKAVKIANAVLNGEDYEKETYEET--FFINRDNVE 324


>UniRef50_C0XA52 Periplasmic sugar-binding protein n=3 Tax=Lactobacillus
           RepID=C0XA52_9LACO
          Length = 320

 Score =  110 bits (274), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 54/307 (17%), Positives = 102/307 (33%), Gaps = 22/307 (7%)

Query: 16  VMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP--DGEKTLNAI 73
             +Q      +K G         ++QT  +       D   +++    P       +N I
Sbjct: 24  FYAQPFGHRPIKFGSTYMTMNNDFYQTLNEPIANEIDDHN-DILYSRNPELSVNNQVNEI 82

Query: 74  DSLAASGAKGFVICTPDPKLGSAI--VAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMM 131
           ++   +  K   I   D      I  + KA    +K+I VD Q  N+    +D    +  
Sbjct: 83  NNFIKNEVKVIFINPVDGTSTKLIRALKKAHEAGIKIIVVDSQLENSS-NYVDCT--IRS 139

Query: 132 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ 191
              + G    +EL           K + ++ +      +   R  G  D +K        
Sbjct: 140 NNYQAGVLCAKELM-------SKQKSANILILQQPTAISVVDRIKGFEDTIKNN--KNFH 190

Query: 192 IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 251
           I      +     ++      L Q        I+ +ND T +G + A      K++ I  
Sbjct: 191 IVDKINTTGQSENSYPKVQKYLKQGKNFDT--IMSLNDKTAVGALAAI-NANNKSSKIAI 247

Query: 252 IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311
             I+G + + ++   Q      ++  SP   G  + ++ Y  +       +   +  V L
Sbjct: 248 YSIDGSENIKKMLSTQNANVKATVAQSPLQIGKVAIKVAYELINHQKVKKEI--ILPVKL 305

Query: 312 ITRDNFK 318
           IT  N K
Sbjct: 306 ITSKNIK 312


>UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Acidiphilium cryptum JF-5 RepID=A5FZM3_ACICJ
          Length = 339

 Score =  109 bits (273), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 57/312 (18%), Positives = 108/312 (34%), Gaps = 24/312 (7%)

Query: 19  QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTLNAIDS 75
            +  A++     + K    P++    + AD A K  G  V   A     D    +  +++
Sbjct: 37  PAKPAKHYHFTLITKSNASPYWLAVREGADAAAKKFGVSVAFEAPASGTDLAGQIGMVNN 96

Query: 76  LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135
               G  G ++   +P+     V  A  + + V+ VD         P  +   +  +   
Sbjct: 97  AVTGGTDGIILAAQNPQALLKPVKSALAHHIPVVTVDSGL-----SPNISDCFLATSNVG 151

Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEK-QIYQ 194
                 +     +            +    +   T   R  G M  +K   +P   ++  
Sbjct: 152 AAAALAKYTADHLMGGKGQYA----IVDFNHTASTGIARPKGFMLGMK--SYPHIKKMGP 205

Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254
           +   +ND+      A +ML Q+P +K  +I G ND   LG   A +      A +  +G 
Sbjct: 206 IQYSNNDVSAGLRIATTMLTQYPHLK--VIFGANDRAALGPAEAVQRAH---AKVKVVGF 260

Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314
           +    + E++  +A     S+L SP   GY +   L + +     P +    T   L+T 
Sbjct: 261 DA--DLGEIALVKAGIIQASILQSPYDMGYYAVVALLDKLDGKTLPKRIN--TPYFLLTP 316

Query: 315 DNFKEELEKKGL 326
            N         +
Sbjct: 317 KNLGSSQATAAI 328


>UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC
           49176 RepID=C4G5I4_ABIDE
          Length = 342

 Score =  109 bits (273), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 50/310 (16%), Positives = 106/310 (34%), Gaps = 27/310 (8%)

Query: 21  AMAENLK---LGFLVKQPEEPWFQTEWKFADKAGKDL--GFEV-IKIAVPDGEKTLNAID 74
           A + N K   + +L    + P++       +   K+   G +V +  +  +    L  + 
Sbjct: 46  ASSGNYKGKSIAYLTPSLDVPFWCYMKHGIEDQAKNTMPGVKVTVYDSKDNANTQLANVQ 105

Query: 75  SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134
               +   G VI   D     A+++ A    + V+  D       G+    V  +    +
Sbjct: 106 DAITNKVDGIVISPTDSASCIAVLSAAEEAGIPVVICD--IGTDSGEY---VSFISTDNS 160

Query: 135 KIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194
              ++ G+ +  ++ K      E A +A+          R  G  + +K      K++  
Sbjct: 161 GGAKKLGEYVADKLNK----GDEIAQIALNQAR-KNGVLRKEGFEEGIKE---KLKEVDF 212

Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254
              +  +          ++  +P +K   I   ++   +G V A +           +G 
Sbjct: 213 RQMEKVNRDEGVRYTQDLITSYPNLK--CIFCHSEDPSMGAVTALKE--INNDKCKIVGF 268

Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314
           +    V E  K  +     +    P   G  + + L   +     P K   V D +L+T+
Sbjct: 269 DCSPEVVEAIK--SGDILATAAQQPVFMGRTAVDCLKTHL-DGGTPEKEISV-DTLLVTQ 324

Query: 315 DNFKEELEKK 324
           DN  +  +K 
Sbjct: 325 DNINDVYDKL 334


>UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3_BACV8
          Length = 908

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 48/266 (18%), Positives = 100/266 (37%), Gaps = 21/266 (7%)

Query: 55  GFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD 113
           G EV I+ A  +    +  I+          ++   +    + +V KA G  + V+ +D 
Sbjct: 55  GVEVEIRTAKDNSRNQIEDINYFIDRKVDLLIVAPNEAAAVTPVVEKAYGLGIPVVVIDR 114

Query: 114 QFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDT-AR 172
           + ++ +         V     +IG+  GQ +   +  +G       ++ IT  E  T A 
Sbjct: 115 KILSDR-----YTAFVGADNCEIGKDVGQYIVNRLGGKGK------ILEITGLEGSTPAM 163

Query: 173 RRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTV 232
            R  G  DALKA   P  +I      +     A +  +S+L  +  +   L+   ND   
Sbjct: 164 ERHRGLADALKAE--PGIEITASVDGAWLQSVAGEKMDSILQDNKGIN--LVFAQNDRMA 219

Query: 233 LGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYN 292
           +G   +   +  +  +++ +GI+ +       +    G   +    P   G K  ++  +
Sbjct: 220 VGAYLSARQRQLEK-EMLFVGIDALPGKGYGVEQVLEGVLDATFIYP-TGGDKVMQVAMD 277

Query: 293 WVAKDVEPPKFTEVTDVVLITRDNFK 318
            +  +  P +        L+ + N +
Sbjct: 278 IL--EKRPYERDTKLSTALVDKTNAR 301


>UniRef50_A1WJI7 Periplasmic binding protein/LacI transcriptional regulator n=102
           Tax=Proteobacteria RepID=A1WJI7_VEREI
          Length = 358

 Score =  109 bits (272), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 47/246 (19%), Positives = 87/246 (35%), Gaps = 18/246 (7%)

Query: 58  VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117
            +     D     N  +++      G +    D + G+  V+KA   ++ V+       N
Sbjct: 88  TVFDGKYDALTQNNQFETMITQKYDGILFVPIDLQAGADAVSKAAEANIPVVGS-----N 142

Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTA-RRRTT 176
            +      +  V       G  Q Q +   M  +G       V+ +      +    R  
Sbjct: 143 GRVNSDKLLSYVGSNDVIAGAMQAQAVVDAMGGKGN------VVILEGPIGQSGQVERRQ 196

Query: 177 GSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 236
           G++  L  A +P  ++ ++ T +     A     + L  H   K   I+G ND   LG +
Sbjct: 197 GNLSVL--AKYPNVKVLEMKTANWSRAEALSLTENWLTAHAG-KINGIIGQNDEMALGAI 253

Query: 237 RATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296
            A + +G     I   GI+G   VS+  +A   G   S+L         + ++L   +  
Sbjct: 254 EAVKAKGLDPKTIPTAGIDG---VSDAVRAVKAGIMASVLQDASAQSQGALDVLLRKLIG 310

Query: 297 DVEPPK 302
               P+
Sbjct: 311 ASYKPR 316


>UniRef50_B1LAH5 Periplasmic binding protein/LacI transcriptional regulator n=3
           Tax=Thermotoga RepID=B1LAH5_THESQ
          Length = 343

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/294 (19%), Positives = 100/294 (34%), Gaps = 23/294 (7%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA--VPDGEKTLNAIDS 75
           S    +E++ +    K    P++         A + LG + I  A    D  K    I S
Sbjct: 15  SVFVFSEDMTILLAPKSLNNPYWFAVENGMKDAAEKLGIKAIFDAPVEADAAKQAEKILS 74

Query: 76  LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135
               G  G  I   DP+    +V +A    + VI  D    ++          +      
Sbjct: 75  YIVKGVDGIGISPNDPEGIKVVVKRALDKGIPVIMFDSDSPDSG-----RYAYIGTNNYN 129

Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELD-TARRRTTGSMDALK---AAGFPEKQ 191
            G   G+ + + ++K   + K   +  +T          R  G  DAL+        E  
Sbjct: 130 AGYEAGKLMAQLIEKYRAEKKTIRLAILTGGLAALNLNERIRGFKDALEDYSKRSGKEIV 189

Query: 192 IYQVPTK-SNDIPGAFDAANSMLVQHPEVKHWLIVGM-----NDSTVLGGVRATEGQGFK 245
               P    +D   A      +  ++ ++  W + G         TV+  +   E    +
Sbjct: 190 YVADPFPCDDDSAKAIQIIRDVTRKYTDLDGWFMSGGWPLFAPKETVISALGGPE----R 245

Query: 246 AADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
             D++ +G + +  + EL   +A    G +   P   GY S  +LYN     VE
Sbjct: 246 MKDLLVVGFDTL--LPELELVKAGAVKGLVGQRPYDMGYLSVLVLYNMAKIGVE 297


>UniRef50_C0C2H6 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM
           15053 RepID=C0C2H6_9CLOT
          Length = 342

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 56/298 (18%), Positives = 97/298 (32%), Gaps = 16/298 (5%)

Query: 26  LKLGFLVKQPEEPWFQTEWKF-ADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKG 83
           LK+GF V   ++  FQTE +  A +     G E+ +  A  D    ++ + S   +G   
Sbjct: 51  LKIGFCVTNRDQ--FQTEQEGIAKELCDSKGIELSVADAKEDISTQISQVSSFVNAGCDL 108

Query: 84  FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143
            +I   D +    I+  A           ++  +      +    V M+    G   G+ 
Sbjct: 109 LMINCVDAESIQEIINAAGDVPCVFF---NRMPSDHSVFDENHYYVGMSDYDCGYDMGKF 165

Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203
           + + ++          V+ +          RT G    L  +G+         T   D  
Sbjct: 166 MAEWLKDNNKTDTADGVLFLGPLGATNTVSRTDGIKKGLADSGYK-VNWVFEDTAEWDRS 224

Query: 204 GAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSEL 263
            A D     +    +     I   ND   LG + A    G+ A       I G+DA    
Sbjct: 225 KAMDKFTQFMGSGKKFD--FIAANNDDMALGCIEALTAAGYSAP--FDFPIAGIDATENG 280

Query: 264 SKAQATG-FYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVT---DVVLITRDNF 317
             A   G    +   SP        E+ +  +     P +  + T      ++T DN 
Sbjct: 281 LLAVGDGTLTATFDQSPSKMTNYCFEIAFAILQDTDMPEEVKDFTWIYKAEMVTADNV 338


>UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding protein n=2
           Tax=Selenomonas RepID=C9LWW5_9FIRM
          Length = 347

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/294 (15%), Positives = 99/294 (33%), Gaps = 20/294 (6%)

Query: 27  KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFV 85
           K+ +     ++ +         +  K  G +V    A  D    ++ ++   ++ A   V
Sbjct: 70  KVIYANHNDDDAFAMQLKNTFAEKAKSAGLDVEFLDAKGDSNLQIDQLNEAISNKAAAIV 129

Query: 86  ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145
           +   D       V KAR   + V+ ++    + K      V   +    + G  QG+ + 
Sbjct: 130 LLAMDGTSIVPTVEKAREAGIPVVIMNRDVNDPK------VIGSLSDDREAGRMQGEFMA 183

Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205
             +           V  +  + L  A +R  G  +A      P+ ++      S      
Sbjct: 184 SHLP-----PNAKVVYLMGESSLSVAVKRWEGFKEACLDKR-PDVKLLASVDGSWSKAEG 237

Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSK 265
             A    L   PE+    +V  ND   LG ++A +         +  G++     + L+ 
Sbjct: 238 MKAMTLWLSFFPEING--VVAANDEMALGAIQALKAANRLNG-CLVTGVDAT--PAGLAA 292

Query: 266 AQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
            +A     ++    +     +  ++  +++     P  +       ITR+N  +
Sbjct: 293 VEAGELSQTVKQDAEGQAAGAVTLVQGFLSGKA--PTESLDIPFTSITRENVAQ 344


>UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM
           3989 RepID=B7CDT0_9FIRM
          Length = 326

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 45/300 (15%), Positives = 109/300 (36%), Gaps = 21/300 (7%)

Query: 27  KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLAASGAKGFV 85
           K+G         ++    +   +  K+ G ++I   +    +K    I  L        V
Sbjct: 45  KIGATYMTYNNTFYSVINEEISRILKEHGDQLIALDSAMSLKKQKEQIHYLIEQQVDAIV 104

Query: 86  ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145
           I   D +     + +A    + VI VD +  + K      V          G +  +++ 
Sbjct: 105 IAPVDYEGLEDSLKEAYRNRIPVIVVDTEVKHNKNITYSIV----SDNYDAGVQCAKDMM 160

Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205
           +++         + ++ +  +   +   R  G  D +++      ++ +       +  A
Sbjct: 161 RKL-------DHANIVLLQHSTTRSGYLRIKGFEDTIQSNE--NYKVVKRMECDGQLEVA 211

Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSK 265
                S +     ++  +++ +ND + +G + A              GI+G     E+  
Sbjct: 212 MPKMESFI--EEGIEFDVVMCLNDPSAMGAMAALSSNNILKDK-YVYGIDGTPEAKEMV- 267

Query: 266 AQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKKG 325
                   ++  SP   G K+ E++Y   +++    K  E++ V +IT++N  ++   +G
Sbjct: 268 -VEGKMAATVAQSPKTFGKKAGEVIYKLFSQETIKNK-NEMSPVQIITKENV-QDYSTEG 324


>UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostridiales
           RepID=A5Z738_9FIRM
          Length = 369

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 61/305 (20%), Positives = 110/305 (36%), Gaps = 29/305 (9%)

Query: 26  LKLGFLVKQPEEPW---FQTEWKFADKAGKDLGFEVI-----KIAVPDGEKTLNAIDSLA 77
           LK+G + K     +   F+  ++ ++K  KD G +V           D        D+L 
Sbjct: 73  LKMGAIAKSFSNEFWRNFKNGYEQSEKVLKDAGVDVSIKIDGTTDESDEIGQQTMTDNLV 132

Query: 78  ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137
             G    ++        +A V  A+G  +  I V+D      G        V   A + G
Sbjct: 133 NQGYNALMLSPISDSNLTASVDNAKGKKIPTINVND------GLIASADYFVGPDAYQNG 186

Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT 197
           E   + + K++  +G        + I   +   AR RT G    +K        +     
Sbjct: 187 ELAAEWVSKQLGDKG-----DVAIVIGMAKAFAARERTAGFKGWIKDNN-SGLNVVAEQN 240

Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV 257
              D   A + A++ + Q+P++K   I   ND   LG V A E       DI+ +G++G+
Sbjct: 241 ADWDRQKAKELASTWIQQNPDLK--AIFCNNDDMALGVVEAVEEA---KKDILVVGVDGI 295

Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317
                    +A     ++          ++E+    +A    P      T   LI + N 
Sbjct: 296 G--EAYDSIRAGKLDATVDSFGYYMSQVATEVTLRVLAGQDIPR--VTHTPQALIDKTNV 351

Query: 318 KEELE 322
            ++ +
Sbjct: 352 DKDAK 356


>UniRef50_A5V1R8 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Roseiflexus RepID=A5V1R8_ROSS1
          Length = 334

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/323 (15%), Positives = 104/323 (32%), Gaps = 14/323 (4%)

Query: 5   TKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAG-KDLGFEV-IKIA 62
             A      +   +        ++G       EPW Q        A  +    E+    A
Sbjct: 21  LAACTQPTSSPGGAGGDAPRRWRIGMSQANNAEPWHQAMNAQIAAAAARHPNIEIEFTDA 80

Query: 63  VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122
             +  + +  +++  + G    +I   +    + IVA A    + VI +D +    +   
Sbjct: 81  RQNNAQQIADVEAFLSKGIDLLIISPNEASPLTPIVASAFQRGIPVIVLDRKVKGEQ--- 137

Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182
                 +      IG + G+   +  +++         +        T + R  G  + +
Sbjct: 138 --YTMWIGADNRLIGRKAGEYTARWCREQQRSPCTVIELRGLEGSTPT-QERGDGFREGI 194

Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242
            A   P+ +I            A   A  +   +P+V   ++   ND   +      + Q
Sbjct: 195 AAN--PDVRIIASQNADWLAERADALARVLFEANPDVD--VVYAHNDPMGIAAFNVAKEQ 250

Query: 243 GFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302
           G     I+ IGI+ + A S+           ++       G ++ E     + +   PP+
Sbjct: 251 GRDTDAILFIGIDAL-ATSDGGIQAVRQGKLNVTYVYPTGGAEAIEWALRILEQRETPPR 309

Query: 303 FTEVTDVVLITRDNFKEELEKKG 325
              + D   +T  N     +K G
Sbjct: 310 EI-ILDTEEVTTANADAMFQKYG 331


>UniRef50_A0JW81 ABC-type sugar transport system periplasmic component-like protein
           n=1 Tax=Arthrobacter sp. FB24 RepID=A0JW81_ARTS2
          Length = 364

 Score =  109 bits (271), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 57/324 (17%), Positives = 102/324 (31%), Gaps = 22/324 (6%)

Query: 8   LAAIGLAAVMSQSA---------MAENLKLGFLVKQ-PEEPWFQTEWKFADKAGKDLGFE 57
           +A +GLA   S +A           + L +G+  +      W++T  +        +G  
Sbjct: 26  VATLGLAGCKSGAAAAADEEAKATGKGLVIGWSQRGISGSDWWKTLVEGGQAEASKVGAR 85

Query: 58  V-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116
           + +  A  D  +    + +L   G    V+   DP      V   +   + V+ V+    
Sbjct: 86  LELLDANGDTVRQNADVQTLITKGVDVVVMNPNDPIGVGPSVQALKDAGIPVVTVNSSL- 144

Query: 117 NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR-RT 175
             K    D    V       G   G+   ++  ++  D  +  ++ I     D     R 
Sbjct: 145 -DKSLVPDMFCYVAEDQEHTGSLAGEVAAQKALEKYGDSGQIKLVGIGGFPGDVLSDLRF 203

Query: 176 TGSMDALKAA--GFPEKQIYQVPT--KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDST 231
            G M          P     ++ T         A      +   +P++K  +I  M+D  
Sbjct: 204 NGFMAGWNRVMEKHPGVTTVKLETKYGEWKPDKALAPIRDVATANPDLK--VIYSMSDVM 261

Query: 232 VLGGVRATEGQGFKAADIIGIGIN-GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEML 290
             G V+  +  G     II    + G+ A+ E+               P   G  +  M 
Sbjct: 262 HGGIVQGLQQAGLWGDGIIMASYDGGMGAIKEMVDDPKGPLQADASNQPWDQGVAAVRMA 321

Query: 291 YNWVAKDVEP-PKFTEVTDVVLIT 313
                 D    P  T   D  +IT
Sbjct: 322 LAAFNGDQSQCPDKTNYIDTTVIT 345


>UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-binding protein n=9
           Tax=Actinomycetales RepID=B5GEU2_9ACTO
          Length = 367

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 86/262 (32%), Gaps = 14/262 (5%)

Query: 37  EPWFQTEWKFADKAGKDLGFEVIKIAVPDG-EKTLNAIDSLAASGAKGFVICTPDPKLGS 95
            P+   E        +  G +++ +       K ++ +  L A GA   VI   +     
Sbjct: 93  NPFRIAETASLKDEARKRGVKLLAVNAQSQFSKQISDVQDLIAKGADLLVIAPLNSDGWE 152

Query: 96  AIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDV 155
            ++  A    + ++ +D +     G   D V  +     + G R   ++ +    +G   
Sbjct: 153 PVLRAASAKKIPIVTIDRKI--NAGPCKDYVSFIGSDFVEQGRRAADKMIEATGGKG--- 207

Query: 156 KESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQ 215
                + + A   +    RT G  D +     P  ++    T              ++  
Sbjct: 208 --EVAILLGAAGNNVTTERTKGFKDRVAEKA-PGLKVVFEQTGDFAREKGQSVTEQLIQS 264

Query: 216 HPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSL 275
            P +K   I   ND   LG V A +  G K   +  + ++G        K    G+   +
Sbjct: 265 KPGIKG--IYAENDEMGLGAVNALKSAGKKPGAVKIVTVDGT---RNAVKQIVDGWISGV 319

Query: 276 LPSPDVHGYKSSEMLYNWVAKD 297
           + S    G  + + L  +   +
Sbjct: 320 IESNPRFGPLAFQTLDTFTKGE 341


>UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional regulator n=6
           Tax=Proteobacteria RepID=A1AYL7_PARDP
          Length = 348

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 53/295 (17%), Positives = 99/295 (33%), Gaps = 23/295 (7%)

Query: 28  LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAI---DSLAASGAKGF 84
           +G + K     ++++  +         G  +   A P     L  +   +++   G +G 
Sbjct: 58  IGGVSKALTNEYWRSLGEGYKNMTDAQGVGLAYQAAPSEGDQLGQLSIAENMILQGYQGL 117

Query: 85  VICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQEL 144
           ++           +  A    + V+ V+D  +            V       G R  Q  
Sbjct: 118 LVSPQTDNNLQPAMETAASRGIAVVNVNDAVIP------SATQYVGNVQRDNGVRVAQWF 171

Query: 145 YKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPG 204
                  G               +  A +RT G    +  AG    Q+      +     
Sbjct: 172 IDNRPGGGKVAAIEG-----QPGVFAAGQRTDGFTTTITEAG--NFQVVASVPANWSREQ 224

Query: 205 AFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELS 264
           A+DAA+++L QHP++  +     ND   LG V A +        +   G +G+      +
Sbjct: 225 AYDAASTILQQHPDLIGF--YANNDGMALGVVEAVKAANL-QEQVSVFGTDGI--PDAYA 279

Query: 265 KAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
             +A    G++   P + G  + E++   +A    P      T   LIT DN  +
Sbjct: 280 SIRAGDLTGTVDSFPVLTGEVAMEVVLRLLAGQGIPRVV--ATPQALITADNVAD 332


>UniRef50_C1YRI6 Monosaccharide ABC transporter substrate-binding protein, CUT2
           family n=3 Tax=Bacteria RepID=C1YRI6_NOCDA
          Length = 332

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 106/299 (35%), Gaps = 16/299 (5%)

Query: 19  QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP---DGEKTLNAIDS 75
            + + E+ ++G +     + ++    +       D G E+  + +    D  +    +D 
Sbjct: 29  GARLGEDGRIGVVY-MDAQGFYAGVREGMQNYADDSGRELQLLELNARGDASEESTFVDV 87

Query: 76  LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135
           ++++     V+           V  A    + VI  +    +   K   T  ++     +
Sbjct: 88  VSSADVDALVLSPVSATASVPAVRLAHESGIPVICYNTCIEDEAAKEYVTSYILG-DPHE 146

Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195
            G   G       +  G +  +  V+      ++   +R  G  +AL A   P+ +I   
Sbjct: 147 FGRLLGDAAADHFEDEGVEDPQIGVLNCEF--VEVCVQRREGFEEALFA-RLPDARIVAN 203

Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255
                 I  A +    +L  HP++  +   G      +G VRA   +G  A +++  G +
Sbjct: 204 QEG-ATIDEAVNVGERLLTAHPDLDAF--YGEAGGATMGAVRAVTNRGL-AGEVVVFGSD 259

Query: 256 -GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLIT 313
              DA   LS  +      ++  S    G  + E +   +A +  P +F     + L T
Sbjct: 260 MSTDAARALSDHR--ILKANVDISGIAVGLLAGETVERIIAGE-APEEFVTEAPIDLYT 315


>UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodobacter sp. SW2
           RepID=C8S5N2_9RHOB
          Length = 349

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 58/310 (18%), Positives = 107/310 (34%), Gaps = 25/310 (8%)

Query: 14  AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAI 73
           A        A   K+G + K     ++++  +        LG E +  A       L  +
Sbjct: 45  AKFGQMPVPAAGTKVGGVSKTLTNEYWRSLGEGYANVATKLGIEFVYQAAQSEGDQLGQL 104

Query: 74  ---DSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVM 130
              ++L + G    +            V  A    + V+ V+D  + +    +  V    
Sbjct: 105 AIAENLISQGFNALLFSPQTDANLIPAVEAATAAGVPVLNVNDAVIPSAANYVGNVQKGN 164

Query: 131 MAATKIGERQGQELYKEMQKRGWDVKESAVMAITA-NELDTARRRTTGSMDALKAAGFPE 189
                 G                      V  I     +  A +RT G  + + A G  +
Sbjct: 165 ------GVNVANWFIA------NRPDGGKVAVIEGQPGVYAAGQRTAGFTETITAGG--K 210

Query: 190 KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADI 249
            ++      +     AF+AA+++L Q+P++  +     ND   LG V A +  G KA  +
Sbjct: 211 FEVVASVPANWSREEAFNAASTILQQYPDLIGF--YANNDGMALGVVEAVKAAG-KAEQV 267

Query: 250 IGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDV 309
              G +G+      +  +A    G++   P + G  + E+    +A    P      T  
Sbjct: 268 AVFGTDGIS--DAYAAVRAGDLTGTVDSFPVLTGEIAMEVALRLMAGQDLPRVV--ATPQ 323

Query: 310 VLITRDNFKE 319
            LIT+DN + 
Sbjct: 324 ALITKDNVET 333


>UniRef50_C5EPY5 ABC-type sugar transport system n=2 Tax=Clostridiales
           RepID=C5EPY5_9FIRM
          Length = 332

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 105/298 (35%), Gaps = 17/298 (5%)

Query: 26  LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP--DGEKTLNAIDSLAASGAKG 83
           L++GF   + + PW   +     +A    G + I         E  +  I  L       
Sbjct: 42  LRVGFSQIETDNPWRTAQINSFREALIPNGMDFIYHEPERYTVEWQVEDIHRLIREKVDY 101

Query: 84  FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143
            VI   D    + ++  A+  D+ VI +D        + +D    + + +     ++GQ 
Sbjct: 102 LVIVPADLASLAPVLQDAKEADIPVILID-----QSAETIDQSYYISLISADY-LKEGQI 155

Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203
               + ++  D     V          A+ R+ G   AL+   +P  +I  +   + D  
Sbjct: 156 CADLLAEKFGDTPCRIVEIYGTESSPGAQARSKGFHQALQQ--YPNMEIIDIEYGNFDRV 213

Query: 204 GAFDAANSML--VQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261
            A  A  + L            +   +D   LG ++A +  G     I  + ING+  V 
Sbjct: 214 TAQKAMENALIKASTSGQPIDAVFAHSDEDGLGALQAIKVAGLAPGRISIVSINGIQDVC 273

Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
           +   A    + G++  +P   G+  + ++          P    +    +IT +N  E
Sbjct: 274 KAIIA--GEYLGTVESNPR-WGFIVASLIQQKERGYKPFPTV--MIPYRIITAENAAE 326


>UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Thermotoga lettingae TMO RepID=A8F472_THELT
          Length = 314

 Score =  108 bits (270), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 39/308 (12%), Positives = 91/308 (29%), Gaps = 27/308 (8%)

Query: 24  ENLKLGFLVKQPEEPWFQTE----WKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAAS 79
              ++G  +   +  W             +   D   E   +   +  + +  + +L A 
Sbjct: 18  AKFRVGVAIPAADHGWTGGMVWWAQYAIKQYANDPDVEFYLVTAKEPSEQIAQVQALLAK 77

Query: 80  GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139
           G    VI   +    + I  +A    +  I VD    + +         +       G  
Sbjct: 78  GIDALVINPYESAPLTPICVQAFRDGIFTIIVDRGINSEEYN-----VYIAGDNYMYGYL 132

Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199
            G+ + +++  +G       V+ I          R      AL+   +P  +I       
Sbjct: 133 AGKYIAEKLGGKGN------VVVIEGIPSTINTERVEAFKKALEP--YPNVKIIAQQPGY 184

Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259
                AF+   ++L + P +    +   +D  + G + A +  G     ++  G    + 
Sbjct: 185 WSREKAFEIMQTLLTKFPNID--AVWTGDDDMLHGVLLALKQAGRDKNIVLVGGACEKNI 242

Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTE------VTDVVLIT 313
           V  +         G     P      +  +    +  +     +        +     +T
Sbjct: 243 VKMIMDGHP--LIGVDFTYPPNMISTAINLAVMALKGEHLNGFYQRGIPRKIILSTETVT 300

Query: 314 RDNFKEEL 321
           ++N K+  
Sbjct: 301 KENAKDYY 308


>UniRef50_B1YXY0 ABC-type sugar transport system periplasmic component-like protein
           n=1 Tax=Burkholderia ambifaria MC40-6 RepID=B1YXY0_BURA4
          Length = 417

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 62/336 (18%), Positives = 109/336 (32%), Gaps = 40/336 (11%)

Query: 19  QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLA 77
           Q A    LK+G+       PWF    K A ++    G+ + +++A  D ++    ID+  
Sbjct: 60  QPANPNQLKIGWTDITLGNPWFVELIKGARQSAAKYGYSIDVQVADGDLQRQCAQIDNFV 119

Query: 78  ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137
                  V+   D    SA + +A    + V+ V                L+       G
Sbjct: 120 TRKMDVIVVDPTDTLGVSACINRAVDAGIPVVTV---GTTPDASARVLTTLLG-NPYASG 175

Query: 138 ERQGQELYKEMQKR------------GWDVKESAVMAITANELD-------TARRRTTGS 178
              G+ + KE  K             G    ES +  + A  +D       T+  R    
Sbjct: 176 FEVGRYVAKEAGKDTPIDAAVVIGVLGNSTSESRINGLIAGIVDQRMRERNTSASREDAM 235

Query: 179 MDALK---------AAGFPEK--QIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGM 227
           +   +             P+    +  +        G+  A   +L  H   K   I+  
Sbjct: 236 LRGFELFQTLKKTGKLSAPDIKFNVLALGVGKWTEEGSLAATEDILSAH-GSKLNFILSE 294

Query: 228 NDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSS 287
           ND   LG +RA    G +    I     G     EL + +      S   S +  G  + 
Sbjct: 295 NDFMGLGALRAVRNMGKQGKIRIADAAGGYRG--ELDQIKKGNILVSGENSGEQTGVAAI 352

Query: 288 EMLYNWVAKDVEPP--KFTEVTDVVLITRDNFKEEL 321
           E ++N   + V+             +IT+ N  +++
Sbjct: 353 EFIHNAFTRRVDANNLPMGSGFPPAIITQGNVDQKI 388


>UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Sebaldella termitidis ATCC 33386 RepID=D1AGX3_SEBTE
          Length = 319

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 103/298 (34%), Gaps = 20/298 (6%)

Query: 24  ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI--KIAVPDGEKTLNAIDSLAASGA 81
           + +K+G  +   ++ +         KA +  G   +    A  D  K +N +++    G 
Sbjct: 37  KKIKVGVSIANFDDTFLTYMMDGMKKAAEKEGDIELEFVDAKEDIAKQMNQVENFVTQGK 96

Query: 82  KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141
              ++   D      +   A     K++ V+       G   D    V     K G  Q 
Sbjct: 97  DVIIVVPVDTSAADPMTNAAVTNGTKIVYVNR----NPGNLPDGAYYVGSEEKKAGIMQM 152

Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201
           + L ++M  +G     + V+ +   + +   +RT G  +   A  +P+ +I    T    
Sbjct: 153 EYLAEKMGGKG-----NIVILMGKLDNEGTIKRTEGVEEI--AKKYPDIKILDKQTGLWQ 205

Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261
                    + L ++   +   IV  ND   LG V+A +  G     I  IG++      
Sbjct: 206 RTDGMAKTENWLNKYGN-EINAIVSNNDDMALGAVQALKDSGKTG--IFVIGVDAT--PD 260

Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
            L+   A     ++    D  G  + E+       +    +        L+T +N  E
Sbjct: 261 GLAALAAGDISATVFQDADGQGGGAVEVAKKAANGETVVKE--TWVPFKLVTPENINE 316


>UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clostridium tetani
           RepID=Q896U1_CLOTE
          Length = 324

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/323 (17%), Positives = 118/323 (36%), Gaps = 23/323 (7%)

Query: 8   LAAIGLAAVMSQSAMAENLK-LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK---IAV 63
           L+A  LA    +SA     K +  +VK  +  ++ +    A+KA K+ G  +I       
Sbjct: 15  LSAGVLAGCGQKSASDSTKKNIALIVKSTDSEYWLSVKAGAEKAAKEAGANIIFKGPATE 74

Query: 64  PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPM 123
            D +  +N ++        G V+   D K     V  A    + ++ VD    + K    
Sbjct: 75  QDIQGEVNIVEDAINQKVDGIVLAASDTKALIQPVENAINAKIPLVTVDSGVDSDK---- 130

Query: 124 DTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALK 183
                +     K   +      + + K G     + V       + TA +R  G  D + 
Sbjct: 131 -VASFIATDNEKAASQAADVCAELIGKSGKVGVVNFV-----PGVSTAVQREKGFRDGMS 184

Query: 184 AAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQG 243
                  ++ +     +D   A      +L  +P+VK   I   N+ + LG  +A +G+G
Sbjct: 185 KHS--GIELLKTQYSQSDKSKAMAITEDILTANPDVK--AIFAANNRSALGVAQALKGKG 240

Query: 244 FKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKF 303
             A  +  +  +      E+   +       ++ +P   G +  + +   +  +    + 
Sbjct: 241 V-AGKVKVVAFDA--DPDEIKGIEDGSITALIVQNPYKMGEEGVKNVLALMKGETVEKRI 297

Query: 304 TEVTDVVLITRDNFKEELEKKGL 326
              T V ++T++N  +   +K L
Sbjct: 298 D--TGVTIVTKENINDPEVQKVL 318


>UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional regulator n=5
           Tax=Actinomycetales RepID=C7QJZ0_CATAD
          Length = 371

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 57/295 (19%), Positives = 102/295 (34%), Gaps = 22/295 (7%)

Query: 36  EEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLG 94
             P+  TE        K LG ++I+  A  D     + I+ + A GAK  ++   +    
Sbjct: 93  SNPFRSTETDSITNQAKSLGVKLIQRNANADVNAQNSQIEDMIAQGAKVLIVAPENSDGL 152

Query: 95  SAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWD 154
              +A+A+   + V+ +D       G         + +       Q Q    ++      
Sbjct: 153 GPALAEAKAKKIPVLTIDR---TVTGTACSDFIAFIGSNFYG---QAQIAADDLATATGS 206

Query: 155 VKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLV 214
             + A+++ T    +    RT G  D +KA  +P   +    T   D          ML 
Sbjct: 207 QAKVAILSGT-PGNNVTTDRTNGFQDQVKA-KYPNMTVVASQTGKFDQTDGQSVMAQMLQ 264

Query: 215 QHPEVKHWLIVGMNDSTVLGGVRATEGQGFK-AADIIGIGINGVDAVSELSKAQATGFYG 273
            +P +    +   ND   LG ++A    G K   DI  + I+G      +    A   Y 
Sbjct: 265 ANPGIT--AVYAENDEMALGAIQAITAAGKKPGKDIKIVSIDGTQ--QAVQDVAAGTIYA 320

Query: 274 SLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKKGLGG 328
            +  +P   G  +   L  +            V   V+I   +F +   ++ L G
Sbjct: 321 DVETNPR-FGPLAFSSLQAFFGTSG-------VASKVIIKDSHFTQANAQQALSG 367


>UniRef50_B5YAA5 ABC transporter sugar-binding protein n=2 Tax=Dictyoglomus
           RepID=B5YAA5_DICT6
          Length = 331

 Score =  108 bits (269), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 58/327 (17%), Positives = 112/327 (34%), Gaps = 26/327 (7%)

Query: 1   MHKFTKALAAIGLAAVMSQSAM-AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG---- 55
           M KF      + +  +M+ +A   + L   ++ K    P F+     A K  ++L     
Sbjct: 1   MKKFLMIFFIVVIFLLMATTAQTPKKLVFAWIPKALNNPVFELGRDGAFKRAEELSKKGP 60

Query: 56  --FEVIKIA--VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAV 111
              EV+ +A    D  +    ++ + A    G  I   DP     ++ KA    + V+  
Sbjct: 61  YKVEVLYVASVASDATEQARVVEDVVARKVDGIAISCNDPTALIDVINKAVEAGIPVMTF 120

Query: 112 DDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTA 171
           D     A          + +   + G+   + L + M   G     + V           
Sbjct: 121 D-----ADSPKSKRFTYLGVNNYEGGKWAAKLLVRAMGTSGDVALLTGV-----PGALNL 170

Query: 172 RRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDST 231
             R  G  D +K   +P+ +I       +DI          + ++P+++ W  VG+    
Sbjct: 171 EERMRGFKDEIKK--YPKIKIVTTVACYDDINRGVQVVEETMQKYPKLRGWFFVGLWPLL 228

Query: 232 VLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLY 291
              G      +  KA  +  +  + +    EL   +     G +       GY + ++LY
Sbjct: 229 AERGSMPLWEKAAKAKKVFTVAFDTL--PVELQLLKEGYLCGLVGQKYWGWGYDAIDILY 286

Query: 292 -NWVAKDVEPPKFTEVTDVVLITRDNF 317
              V  +  P       D  ++T+ N 
Sbjct: 287 RKVVNNEKFPDWIDSGMD--IVTQKNV 311


>UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional regulator n=4
           Tax=Proteobacteria RepID=A5G0N2_ACICJ
          Length = 345

 Score =  108 bits (268), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 55/281 (19%), Positives = 95/281 (33%), Gaps = 18/281 (6%)

Query: 24  ENLKLGFLVKQPE-EPWFQTEWKFADKAGKDLGFEVIKIAVPDGEK--TLNAIDSLAASG 80
             L +GF   +    P+   E K    A K      +        +   +  ++++   G
Sbjct: 54  SKLVVGFSQSESNANPFRAGETKSVRDAAKAFHVRRLIYTNAHSNQSRQVADVENMINQG 113

Query: 81  AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT-KIGER 139
           A+  +I   D        A+A    + ++ +D +   A  K  D +  +      K GE 
Sbjct: 114 AQALIIAPLDSTGLQPAFAQAAAKHIPILTLDRR--TAGSKCSDYLSFLGSNFYFKQGEI 171

Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199
             +EL K     G     + +     N ++ A  RT G    LKA  +P  +I    T +
Sbjct: 172 DARELAK---ATGGHAMVAEIQGAYGNSVEVA--RTKGFAAGLKA--YPGMKIVTEQTGN 224

Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259
                A    + +L+ HP V    +    D+   G + A    G K   +  + I+G   
Sbjct: 225 WFTTDAQKVMSQILLAHPNVN--AVYAQADTMAFGAITALRDAGKKPGQVKIVSIDGTR- 281

Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300
              +        Y     +P   G  +   L NW      P
Sbjct: 282 -QGVQDIVDGWIYADDETNPR-FGPIAFHELQNWFDGKPVP 320


>UniRef50_A8RPB7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8RPB7_9CLOT
          Length = 363

 Score =  108 bits (268), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 50/275 (18%), Positives = 96/275 (34%), Gaps = 11/275 (4%)

Query: 35  PEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKL 93
            E+ +F+      + A KDLG+E+ +     D  K    +++  A G  G  I      +
Sbjct: 73  QEDQFFKLMSAGYEAAAKDLGYEIQLSNVTNDQMKETELVNTYTAQGVAGIAISPLSATI 132

Query: 94  GSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGW 153
               +  +    +K+   +    +       ++           ++ G+     ++++  
Sbjct: 133 SPEALKVSSDKGVKICVANTAMDS----YPFSIAAYTSDNYAFCKQTGEIAVDFIKEKYG 188

Query: 154 DVK-ESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSM 212
           D K E  ++       +T+  R  G + AL   G    +I            A   A  M
Sbjct: 189 DEKIELGILQFKTQIPETSAERVNGFLAALDEGGV-NYEIVSNQDA-WLQDTAIAKAGDM 246

Query: 213 LVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFY 272
           L  +P++   ++   ND   +G V A E  G +A      G +  + + +L KA      
Sbjct: 247 LAANPDID--IMFAANDGGTIGAVMAVENAG-QAGKTFVFGTDASEQIVDLLKADNDILQ 303

Query: 273 GSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVT 307
                 P   GYK+ E L   +       +   V 
Sbjct: 304 AVTGQDPFQIGYKTVETLVQSIEGKDVADQGKTVI 338


>UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding protein, CUT2
           family n=1 Tax=Meiothermus silvanus DSM 9946
           RepID=C1XS39_9DEIN
          Length = 320

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 58/306 (18%), Positives = 110/306 (35%), Gaps = 16/306 (5%)

Query: 3   KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA 62
           +   A  A+  A        A+ L +  L+K    P++         A +     +I  A
Sbjct: 2   RLLTASTAVLAALAWGTLGFAQQLTIAALMKTTANPFWGAMEAGIRDAAQKGNVNLILQA 61

Query: 63  V---PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA- 118
           V    D E  LNA  +L     +  V+   +       + +A   ++ ++ +D     A 
Sbjct: 62  VASETDVEPQLNACLNLLQRKPQALVVAAINSVNLLPCLKQANQQNIPIVDLDGNLDPAV 121

Query: 119 -KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177
            + + +     +     + G    + +  ++  +G+  K   +  +  N   T   R  G
Sbjct: 122 LQREGVKIAFSISSDNRRAGASAAEYVVSKL-GQGFSGKVLVIEGLAGNV--TGAARRDG 178

Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237
             + LK    P  QI        D   A +  N  L +HP++    I   ND+  LG V 
Sbjct: 179 FTERLKQIA-PNAQIVATLPGDWDRLKAANITNDTLQRHPDL--AAIYCANDTMALGAVE 235

Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
           A    G K   ++ +G +G      +   +A     S+   P + G ++ E +   +  +
Sbjct: 236 AVFAAGKK---VLVVGTDGNS--DAVKSIRAGRLNASVAQLPFLVGSRAIENVLKVIKGE 290

Query: 298 VEPPKF 303
              PK 
Sbjct: 291 QVDPKI 296


>UniRef50_C0C2X7 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM
           15053 RepID=C0C2X7_9CLOT
          Length = 324

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 43/301 (14%), Positives = 97/301 (32%), Gaps = 16/301 (5%)

Query: 24  ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEK-TLNAIDSLAASGAK 82
           E + +G  V       +       +   K+ G++   +      +  +  +++    G  
Sbjct: 38  EEISIGVTVMTLANTIWAETCTAIEDNCKENGWKCTVVDCSSTAQTQITQVENFIQKGVD 97

Query: 83  GFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQ 142
             VI   D      ++ +A    +KVI+ D   +++       +        +IG++   
Sbjct: 98  AIVINPTDQAALETVMKEAMDAGIKVISWD---IDSDAADCCLLVDNYNVGYEIGKQAAD 154

Query: 143 ELYKEMQKRGWDVKESAVMAITANELDT-ARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201
            +   +  +      + V  +   E      +R  G  DA+     P  ++    +    
Sbjct: 155 WIEDNLDGK------AEVCILDYPEAGAEVIKRADGINDAITELS-PNSKVVAQVSHQGS 207

Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261
             G   A  ++L  +P+ +  ++  + D   +G   A +  G K  +      +G     
Sbjct: 208 TDGGMQAMENVLQSNPDCR--VVCSVGDGGAMGANEALKAAGIKGEEAGIFSADGTTEFL 265

Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEEL 321
               A        LL  P       ++ L   +  +         T+V +I   N  E  
Sbjct: 266 SKIAAGEPCKMSILLDDPLSKAASITDTLDKLLKDEKVEKDLY--TNVQVIDESNLSEYY 323

Query: 322 E 322
           +
Sbjct: 324 K 324


>UniRef50_B2JP41 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Burkholderia RepID=B2JP41_BURP8
          Length = 322

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 51/308 (16%), Positives = 101/308 (32%), Gaps = 16/308 (5%)

Query: 9   AAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGE 67
           AA+ +AA ++  A  + + LGF     E  W          + KD G  +    A    E
Sbjct: 15  AALTVAASVNSFAGDKQITLGFSQVGAESAWRTANTVSVKTSAKDAGINLKFSDAQQKQE 74

Query: 68  KTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVP 127
             + AI S  A                  ++ +A+   + VI + D+ ++ K   +  V 
Sbjct: 75  NQIKAIRSFIAQKVDVIAFSPVVESGWEPVLTEAKNAKIPVI-LTDRSIDVKDTSLY-VT 132

Query: 128 LVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGF 187
           ++     + G R G+ L +  +     +  + +          A  R  G M+ +K    
Sbjct: 133 MIGSDFLEEGRRAGRWLEERYKNEAGPINIAELQGTVG--SAPANDRHAGLMEVIKND-- 188

Query: 188 PEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA 247
           P+ +I    +    + G      +   +    +  ++   ND   LG ++A E  G K  
Sbjct: 189 PKFKIIASQSGDFTLAGGKQVMEA-FAKTYGKQINVVYAHNDDMALGAIQAMEEAGIKPG 247

Query: 248 DIIGI--------GINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
             + +        G   + A       + +   G  L +         ++    V  +  
Sbjct: 248 KDVSVVSFDATKGGFEAMIAGKINVDVECSPLLGPQLMTAVKDVVAGKQLPKRIVTNETV 307

Query: 300 PPKFTEVT 307
            P      
Sbjct: 308 FPMSVAAQ 315


>UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_BACUN
          Length = 919

 Score =  107 bits (267), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 53/260 (20%), Positives = 102/260 (39%), Gaps = 20/260 (7%)

Query: 59  IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
           I+ AV D ++    I  L A G    ++   +    + +V +A    + VI VD + ++ 
Sbjct: 63  IRTAVDDNDRQAKDIRELIAEGVDLLIVAPNEATPITPVVEEAYNRGIPVIVVDRKILSD 122

Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
           K         V     +IG+  G+ +   +  +G  V+ S ++         A  R  G 
Sbjct: 123 K-----YTAYVGADNYEIGKAVGEYVANVLHGQGDVVEISGLV-----GSTPAVDRHQGF 172

Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238
           + A+ A  +P  ++  V   +     A +  +++L + P +   L+   ND    G   A
Sbjct: 173 VKAISA--YPGIRLLAVEDGAWLQLKAGEKMDTLLSRFPHID--LVYAQNDRMAAGAYAA 228

Query: 239 TEGQGFKAADIIGIGINGVDAVS-ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
              +G +  D+  IGI+ +      + K  A     + +      G +  ++  + + K 
Sbjct: 229 AAREGREK-DMRFIGIDALSGKDYGVEKVLAGELDATFIYP--TGGDRVMQIAMDILNKR 285

Query: 298 VEPPKFTEVTDVVLITRDNF 317
             P +    T VV   RDN 
Sbjct: 286 DFPRETILGTSVV--DRDNA 303


>UniRef50_D2QME7 Two component transcriptional regulator, AraC family n=1
           Tax=Spirosoma linguale DSM 74 RepID=D2QME7_9SPHI
          Length = 940

 Score =  107 bits (267), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 43/314 (13%), Positives = 105/314 (33%), Gaps = 23/314 (7%)

Query: 13  LAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGK-DLGFEVI-KIAVPDGEKTL 70
           +A   S +   +  ++GF      + W +T      +       + ++ + A     + +
Sbjct: 38  MAGCQS-ATKTKTYRIGFSQCTGGDEWRKTMLHDMKRELTFHPNYTLLYEDAENSTTRQI 96

Query: 71  NAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVM 130
           + I +L   G    ++   +    + ++       + VI +D +              + 
Sbjct: 97  SQIQALIDQGIDLLIVSPNEVAPFAKVIEDVFKRGIPVILLDRKIETESYN-----AYIG 151

Query: 131 MAATKIGERQGQELYKEMQKRGWDVKESAVMAITA-NELDTARRRTTGSMDALKAAGFPE 189
               +IG   G  +   ++ +G       ++ I        A+ R  G ++ L+   +P 
Sbjct: 152 GDNVEIGRLAGVFIGNHLKGKG------RIVEIWGLPSSSPAQERHRGLLEELRK--YPG 203

Query: 190 KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADI 249
            Q+ +      +         + L    +V   L+   ND   LG     + +G +    
Sbjct: 204 IQVVKELNGQWERDTVGRVVAAELNTLKDVD--LVFAHNDVMALGAYAVCKQKGIEKKLD 261

Query: 250 IGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDV 309
             +GI+ +   +   +A   G   +    P   G ++ E     +A      +  +V + 
Sbjct: 262 F-VGIDALPGPNAGMQAITDGILKASFLYP-TGGEEAIETATRILAGKSVKRE--QVLNS 317

Query: 310 VLITRDNFKEELEK 323
           + I   N +    +
Sbjct: 318 IQIDGSNVRALKAQ 331


>UniRef50_C5CZB4 Periplasmic binding protein/LacI transcriptional regulator n=24
           Tax=Bacteria RepID=C5CZB4_VARPS
          Length = 315

 Score =  107 bits (266), Expect = 6e-22,   Method: Composition-based stats.
 Identities = 47/285 (16%), Positives = 102/285 (35%), Gaps = 19/285 (6%)

Query: 20  SAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPD---GEKTLNAIDSL 76
           +   + + +  + K  +  ++Q     A++A KDL  +V           +K ++ + + 
Sbjct: 22  AQAQQEIYIPLVSKGFQHQFWQAVKSGAEQAAKDLKVKVTFEGPETEAMVDKQIDMLAAA 81

Query: 77  AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136
            A   +       D +    ++ KA+   + V+A D    +        V          
Sbjct: 82  LAKKPQAIGFAALDSQAAIPLLKKAQAAKIPVVAFDSGVDSDIP-----VTTTTTDNKAA 136

Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196
                 ++ + + K G        + +      T   R  G ++ +K+A +P  +I  V 
Sbjct: 137 AALAADKMAEMIGKSG-----EVALVVHDQTSRTGVDRRDGFVNRIKSA-YPNIKIVSVQ 190

Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256
               D   + +   S+L   P +K   I G N+ + +G V   +    ++  ++ IG + 
Sbjct: 191 YGGGDQLKSTEITKSILQASPNLKG--IFGANEGSAIGVVNGVKEM-KRSGKVVIIGYDS 247

Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301
                           G++  +P   GYK+ EM    +  +  P 
Sbjct: 248 GKQQKNAI--MDGSMAGAITQNPVGMGYKTVEMAVKAIKGEKLPK 290


>UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette transporter, binding
           protein n=2 Tax=Corynebacterium glucuronolyticum
           RepID=C0VSF4_9CORY
          Length = 306

 Score =  107 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 63/313 (20%), Positives = 104/313 (33%), Gaps = 30/313 (9%)

Query: 9   AAIGLAAVMSQS---AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVP 64
             + L+           A +  +   +   + P+F      A     +LG +  +  A  
Sbjct: 12  GILTLSGCSGTPRDVPAAGSRAVTLALSTEKNPFFLQVRYGAQAKANELGIDLTVLDAGD 71

Query: 65  DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124
           D E     +D   +SG    V+   D +  +  V++     +  I VD           D
Sbjct: 72  DAEVQAAQLDD-VSSGV--AVVNPADSEALAPAVSQLNEKGIPAITVDRTI-----TGAD 123

Query: 125 TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA 184
              L+    T+ G      L K ++ +G    E  V+        +A  R  G   A+  
Sbjct: 124 VAALIDSNNTEGGAAAASVLAKAIRAQG----EVIVLRGIEGSSSSA-ERYEGFTQAM-- 176

Query: 185 AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT-EGQG 243
           A  P  +I        D   A D    +L  HP+V    I   ND   LG V A  E  G
Sbjct: 177 AEHPRVRIVAAEAADFDRDTARDLVTDLLADHPDVAG--IFAENDEMALGAVDALGERAG 234

Query: 244 FKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKF 303
               D+  +G +G +      K +      ++       G  + E     +  +      
Sbjct: 235 ---KDVKVVGFDGTEEGVRAVKNRK--LVATIAQQSSELGATAIEQAGKLLDGEAAESVH 289

Query: 304 TEVTDVVLITRDN 316
           T V    ++TRDN
Sbjct: 290 TPVM---VVTRDN 299


>UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transcriptional regulator
           n=1 Tax=Oribacterium sinus F0268 RepID=C2KYA7_9FIRM
          Length = 281

 Score =  107 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 48/300 (16%), Positives = 99/300 (33%), Gaps = 23/300 (7%)

Query: 28  LGFLVKQPEEPWFQTEWKFADKAGKDLGFE----VIKIAVPDGEKTLNAIDSLAASGAKG 83
           +   +      + +T      K  ++LG+      I     D    ++ I+     G  G
Sbjct: 1   MALFMSHMTNEFVKTLSSSVQKEAEELGYTGDSFKIYDGKNDVATQVSQIEQAVTLGVDG 60

Query: 84  FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143
            +I           V  A    +KV+ ++ +  +           V       G    ++
Sbjct: 61  IIIEPVSTDGIVKAVKDAEKVGVKVVILNQRISDQNA----ADTFVGADNESTGAALMKK 116

Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203
           + +++  +G  V+    M            R+ G    L  A +P+ ++    +   D  
Sbjct: 117 VMEDLDGKGNIVELLGPMGSDGQ-----VGRSKGFDSVL--AEYPDVKVIASDSADWDTA 169

Query: 204 GAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSEL 263
            A     + L          +V  ND   +G  +A +  G     I   G++       L
Sbjct: 170 KALTLTENWLTSS---DIQAVVAQNDGMAVGAAQAIKEAGLT-DKIKVYGVDATS--DGL 223

Query: 264 SKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEK 323
           +     G  G++    +  G  S+++  N +     P +       V+ T++N  E L+K
Sbjct: 224 NAIVNGGMTGTVSQGTENQGKISADLCSNLIYGQSVPKEVIATN--VVYTKENVNEILKK 281


>UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor histidine kinase n=1
           Tax=Prevotella copri DSM 18205 RepID=D1PGX0_9BACT
          Length = 497

 Score =  107 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 43/255 (16%), Positives = 87/255 (34%), Gaps = 19/255 (7%)

Query: 62  AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121
           A  DG+     IDS+ A      V+   +    +  + +A    + VI  D +       
Sbjct: 64  AENDGQCQARQIDSMIARKVDLIVVAPDNVNDVTPAIERAYRAHIPVILFDRKVKTP--- 120

Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181
                  +     + G    + L  ++  +G  V+ + +      +      R  G  + 
Sbjct: 121 --HYTASIGGDNVEAGREVARFLASKLDGKGTVVEITGL-----KDASPVIERHRGFHEV 173

Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241
           +K   +P  ++  + + +  +  A +     L +        + G +D   +G     E 
Sbjct: 174 MK--NYPGIKVVTLES-NWKLERAQELMKQYLDKGGHADG--VFGHSDLGAIGAFLEAER 228

Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301
           +G     ++ +GI+G+    E       G + +    P   G K  E+  N +     P 
Sbjct: 229 RGIDK-QMLIVGIDGLPGEWEGVDRVKRGQFAASYVYP-TQGEKIMELAMNILQGK--PY 284

Query: 302 KFTEVTDVVLITRDN 316
           K   V    L T +N
Sbjct: 285 KKDNVMKSFLATPEN 299


>UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI family n=1
           Tax=Agrobacterium radiobacter K84 RepID=B9JQF4_AGRRK
          Length = 337

 Score =  107 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 40/292 (13%), Positives = 84/292 (28%), Gaps = 17/292 (5%)

Query: 14  AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKA---GKDLGFEVIKIAVPDGEKTL 70
            A+    A A+  K+  +V+     +       A              +     D     
Sbjct: 20  TALTGAPAYAKTFKIAAIVQSLNTEYNVLWADAAKSHPALADGTATLTVLDGRQDVLTQS 79

Query: 71  NAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVM 130
           N  D+         +    D   G+  + +A+   + V   +      +         + 
Sbjct: 80  NLFDTAITEKYDAIIFIPVDIDAGNEPIERAKAAGIPVFGSNTVVSKTE----LYDAYIN 135

Query: 131 MAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEK 190
               + GE   + +     K G D K   +  +         +R  G  + LK       
Sbjct: 136 SNDVEAGEMLAKAVID---KAGKDAKVVVLEGMLGQSAQ--VQRLEGINNVLKQNS--GV 188

Query: 191 QIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADII 250
            I +  T +     A     + L  H + +   ++  ND   +G +      G     + 
Sbjct: 189 TILEQNTANWSRAEAITLMENFLTSHGD-QVQGVLAENDEMAVGAIEGIRNHGLDPKKLP 247

Query: 251 GIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302
             G++G+    E  K        S+L         + ++  + +  D   P+
Sbjct: 248 VAGVDGIKDALEAVKRGEQTM--SILQDASGQSQGAIDLALSKLVGDTYKPR 297


>UniRef50_C7IMM2 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Clostridium papyrosolvens DSM 2782
           RepID=C7IMM2_9CLOT
          Length = 352

 Score =  107 bits (266), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 59/315 (18%), Positives = 119/315 (37%), Gaps = 23/315 (7%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGF--EVIKIAVPDGEKTLNAIDS 75
           S +   +++ +  + K  + P F    +  ++ G++LG   E +     D    +  ++S
Sbjct: 47  SNNTQKKDIIIAMVPKSLDNPVFLDALEQGERVGRELGIKVEWLGPMQSDTNVQIAIVES 106

Query: 76  LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135
           L      G VI   DP     ++ KA    ++V   D    ++       +         
Sbjct: 107 LIRRRVDGIVISCIDPAKIKPVIDKAVKAGIQVATFDSDSPDS-----SRLFYCGTDNYA 161

Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITAN-ELDTARRRTTGSMDALKAAGFPEKQIYQ 194
            G   G+ L KE +++G D +   V+ +TA+ E +   +R  G ++ ++  G     I  
Sbjct: 162 AGVACGKALIKEAKEKGMDKQVLDVLLMTADKESNNLNKRLNGFLETVRHGGIK-LNITD 220

Query: 195 VPTKSNDIPGAFDAANS-MLVQH-PEV---KHWLIVGMNDSTVLGGVRATEGQGFKAADI 249
               ++D+  A D   + +   + P+V              ++ G     +  G      
Sbjct: 221 TLYCNDDVNIAGDMLENHIRTGNTPDVFFSTGGWPFVSPPESLPGFHAWCKNGGIS---- 276

Query: 250 IGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDV 309
             I ++    V E   A+       +  + +  G  S + LY  +  +  P  F + T +
Sbjct: 277 --ILVDTYYPVLEA--AEKGLADALVGQNFNKMGELSIKNLYKAIRGEKVPSSFID-TGL 331

Query: 310 VLITRDNFKEELEKK 324
            L  + NF + LE K
Sbjct: 332 ELGDKSNFAKLLEGK 346


>UniRef50_A1SYE6 Transcriptional regulator, periplasmic binding protein of LacI
           family protein n=1 Tax=Psychromonas ingrahamii 37
           RepID=A1SYE6_PSYIN
          Length = 313

 Score =  107 bits (266), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 54/324 (16%), Positives = 109/324 (33%), Gaps = 24/324 (7%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQ--TEWKFADKAGKDLGFEV 58
           M      +   G+  + S ++ A  L +   +     P+F    E   A    +  G   
Sbjct: 1   MKNIISKIMIAGIVLLGSVTSKAFALTVAISLVDLSNPFFIMLAEEISAQLEAQVEGQLT 60

Query: 59  IKI--AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116
           I +  +  D  +    I            I           +  AR   + V AVD   +
Sbjct: 61  IYVHSSAYDLNQQNQQIKDFINKEVDIIFISASASDAIEPSIISAREKGIIVAAVD---I 117

Query: 117 NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTT 176
            ++G  +     +     + G+   Q L   +  +G    E A++      + +   R  
Sbjct: 118 ESRGADIS----ITSDNFQAGQLSCQYLVDRLGGKG----EIAIINGW-TTISSTSNRVA 168

Query: 177 GSMDALKAAGFPEKQIYQ-VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG 235
           G  D LK   +P  ++       S    G  ++   +++++P ++   +  +ND   LG 
Sbjct: 169 GCRDLLKK--YPGIKLVSYSHNGSGSFSGGLESMTYLMLEYPNLE--AVFAINDLAALGA 224

Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295
             A +  G     II   ++G     E  K + +    +    P     K+  +    + 
Sbjct: 225 EEAAKQSG--NNKIIIASVDGSPLFLEHLKLKDSLLVATAAQFPRAIAQKAVILALQKLR 282

Query: 296 KDVEPPKFTEVTDVVLITRDNFKE 319
            +      TE+    L+T+ N  +
Sbjct: 283 -ETSAGHTTELIPTELVTKQNVSQ 305


>UniRef50_D1AIH6 Galactose-binding protein n=3 Tax=Bacteria RepID=D1AIH6_SEBTE
          Length = 353

 Score =  106 bits (265), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 61/305 (20%), Positives = 113/305 (37%), Gaps = 20/305 (6%)

Query: 23  AENLKLGFLVKQPEEPWFQTEWKF----ADKAGKDLGFEVIKIAVPDG----EKTLNAID 74
            + +K+G  + + ++ +  +        +D+  K+ G E I I   DG        + +D
Sbjct: 39  KKEIKIGVALYKFDDTFISSVKDAINEISDEKSKETG-EKITINAVDGQGQQATQNDQVD 97

Query: 75  SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134
           +    G     +   D    S I+ KA+   + V+  + + V       D +  V   A 
Sbjct: 98  TFITQGYDVIAVNMVDRTAASVIIQKAQAAGIPVVFFNREPVAEDMAKWDQLYYVGAKAE 157

Query: 135 KIGERQGQELYKEMQ-----KRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPE 189
           + G  QG+      +      +  D K   V+         A  RT  S+ AL+AAGF  
Sbjct: 158 ESGTIQGEVAADYFKANPDADKNKDGKIQYVILEGEPGHQDALLRTEYSIKALEAAGFQV 217

Query: 190 KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAAD- 248
            ++    T         +   + +    + K  L++  ND   LG + A +  G+ +   
Sbjct: 218 DKLASD-TALWQRANGQEKMAAWISAFGD-KIELVLANNDDMALGAIEALKAAGYLSDGK 275

Query: 249 -IIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVT 307
            I  IG++      +  KA     YG++L      G    ++ Y    K+    K   +T
Sbjct: 276 FIPVIGVDATAPAKDSLKA--GLLYGTVLNDARGQGKGIFDIAYALAKKENPAEKVQGIT 333

Query: 308 DVVLI 312
           D   +
Sbjct: 334 DGKYL 338


>UniRef50_C9Y9X5 Putative uncharacterized protein n=1 Tax=Curvibacter putative
           symbiont of Hydra magnipapillata RepID=C9Y9X5_9BURK
          Length = 318

 Score =  106 bits (265), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 57/285 (20%), Positives = 96/285 (33%), Gaps = 21/285 (7%)

Query: 11  IGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGE--K 68
           I +A     SA      + ++        +      A KAG+  G + I++A   GE  K
Sbjct: 12  IAMATAGLMSAAMAETTIAYITNGNTNEGWTLINGGAKKAGQKAGVKFIELAAEKGELSK 71

Query: 69  TLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPL 128
            L  ++ +         I   D    +  + KA    +KV+AVD     AK         
Sbjct: 72  QLAIVEDMITRKVNAIAIAPVDSAGIAPAINKALAAGIKVVAVDTGISGAK-----ITSY 126

Query: 129 VMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFP 188
           V     K    QG    ++++       ++ +         T + R  G +D L A    
Sbjct: 127 VATDNIKAAMVQGDWTAEQIKD-----GDTVIYVTGDQGQSTGQERKKGFLDGLNAKR-K 180

Query: 189 EKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAAD 248
             ++ +V T + D   A +   + L  +P  K  +I    D   LG   A    G KA D
Sbjct: 181 NVKVVEVAT-TWDQTMAQNGVETALRANPTAK--VIACAWDGGALGAKAALMAAGKKAGD 237

Query: 249 IIGIGINGVDAVSE-----LSKAQATGFYGSLLPSPDVHGYKSSE 288
           +   G +G     +        A A      +          ++E
Sbjct: 238 VKIAGFDGSPGGLDMMKQGWQSANAAQMLAKIGQVGVETAIAAAE 282


>UniRef50_UPI00019034CB methyl-accepting chemotaxis protein n=1 Tax=Rhizobium etli GR56
           RepID=UPI00019034CB
          Length = 854

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 51/281 (18%), Positives = 97/281 (34%), Gaps = 16/281 (5%)

Query: 5   TKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEVIKIAV 63
           T  LA+I LA      ++A    +G  +   ++ + +      D  GK + G +++    
Sbjct: 3   TATLASIALA---ISVSVANAQTIGVSMTNLDK-FREMLVNGVDSHGKTISGLKLVTQNA 58

Query: 64  P-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122
             D E     +    A      ++   D  LG  +   A    + +I ++    N    P
Sbjct: 59  NGDNELQKKQVQQFVADKVDAIIMMLSDGDLGPQMTKIAADAGIPLIYINTTPSNLLDLP 118

Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182
            + V +V       G  + +++   ++ +G       V+ +       AR RT    D +
Sbjct: 119 DNQV-VVASDEKDSGTLETKQVCSLLKGKG-----RVVVLMGEVFHVAARTRTQDIADVI 172

Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242
                   +I +          A       L     VK   ++  ND   LG +RA +  
Sbjct: 173 ATPECKGLEIVEQQAAYWSRDYADQQMQEWLAA--GVKFDAVIANNDEMALGAIRAMKKA 230

Query: 243 GFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHG 283
                D++  G++  D    L+   A     ++L S    G
Sbjct: 231 NIPMKDVVVAGVDATD--DALAAMVAGDLDVTILQSAVGQG 269


>UniRef50_B9XKI8 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=bacterium Ellin514 RepID=B9XKI8_9BACT
          Length = 318

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 55/309 (17%), Positives = 109/309 (35%), Gaps = 28/309 (9%)

Query: 17  MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG--------FEVIKIAVPDGEK 68
            + +   ++  +G + K    P FQ     A  A K+LG         +       D +K
Sbjct: 17  STHAQTKKSYTIGLVAKSQGNPVFQAARVGAVDAAKELGKKYDINIKIDWRTPNEEDAQK 76

Query: 69  TLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPL 128
              AI+ L  +GA G  +   D    +  +  A    + V   D     +          
Sbjct: 77  QAEAIEQLVLAGADGIAVSCSDANKLTDAINSAVKNGVPVATFD-----SDAPASKRFVT 131

Query: 129 VMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFP 188
             +   K GE+  +EL K M  +G        +          ++R  G  +A  A  +P
Sbjct: 132 YGVDDIKCGEQVMEELAKVMGGKG-----VIAILAGNQNAPNLQKRVQGVKNA--AKKYP 184

Query: 189 EKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAAD 248
              I            A      ++  +P++  W ++G         ++      ++A  
Sbjct: 185 GITIRDTYYHKETPQDAAAKVEQVMQANPDITGWAMIGGWPLFTDNALK------WQAGT 238

Query: 249 IIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTD 308
           I  + ++ +   +EL+  ++      L       GY+S+E L N +     P    +V+ 
Sbjct: 239 IKCVSVDAL--PAELAYLKSGHVQILLAQQVYEWGYRSTEHLINKIHLKKNPENVKDVSP 296

Query: 309 VVLITRDNF 317
           ++ +T++N 
Sbjct: 297 LIPVTKENV 305


>UniRef50_C5EU51 D-galactose-binding periplasmic protein n=4 Tax=Clostridiales
           RepID=C5EU51_9FIRM
          Length = 350

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 54/303 (17%), Positives = 114/303 (37%), Gaps = 18/303 (5%)

Query: 22  MAENLKLGFLVKQPEEPWFQTEWKFADKAGKD----LGFEV---IKIAVPDGEKTLNAID 74
              ++++G L+ + ++ +  T     +   K+     G +V   I  +        + ++
Sbjct: 34  KKNSIRIGVLLYRGDDTFIGTLRAGLEDKAKEYEQKTGIKVKLDILDSKGSQNTQNSQVE 93

Query: 75  SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134
            L + G     I + D    S I+ KA      V+  + + V       + +  V   A 
Sbjct: 94  RLISLGCDALCINSVDRSSASIIIDKAMDAGTPVVFFNREPVEEDMNRWEKLYYVGADAK 153

Query: 135 KIGERQGQELYKEMQK--RGWDVKESAVMAITANELDTARR----RTTGSMDALKAAGFP 188
           +    QG  L    +K  R  D   + +++    E +T+ +    RT  S+  LK  G P
Sbjct: 154 ESAVLQGDALVDAYRKDSRTLDANGNGLVSYVLLEGETSHQDSLIRTEWSIQTLKDGGVP 213

Query: 189 EKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAAD 248
            ++I      + D   A       L ++P  +  L+V  ND   LG + A    G  A  
Sbjct: 214 LEKITGGI-ANWDRSQASALMEQWLKEYPG-QIELVVSNNDDMALGAIDAMNRAGIGANS 271

Query: 249 IIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTD 308
           I  +GI+G      +   +    + ++    + +     ++ ++ ++ D +P     + +
Sbjct: 272 IKVVGIDGT--PVGIKALEEGTLFATVESDKERYAQAIFDIAWS-LSLDQDPKSVVPLVN 328

Query: 309 VVL 311
              
Sbjct: 329 GKY 331


>UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding protein) n=1
           Tax=Bacillus halodurans RepID=Q9K631_BACHD
          Length = 327

 Score =  106 bits (264), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 47/303 (15%), Positives = 94/303 (31%), Gaps = 24/303 (7%)

Query: 24  ENLKLGFLVKQPEEPWFQTEWKFADKA-GKDLGFEVI-KIAVPDGEKTLNAIDSLAASGA 81
             + +GF      + +             +    EV+   A  D +  +  ++ L A G 
Sbjct: 44  GKMVIGFAHPDFNDMFLGFLLAGVQAYEAEQTNVEVVYVDAENDSDGQIAQVEDLIAQGV 103

Query: 82  KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141
              +    D      IV +A+   + V+ ++   V  +         V   + + G  Q 
Sbjct: 104 DAIMAIPVDLIATEFIVDRAQQAGVPVVLINRDSVERE------DAYVGSDSLQAGTIQM 157

Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARR-RTTGSMDALKAAGFPEKQIYQVPTKSN 200
           +E+   ++ +G       +  +      TA+  RT G+   +    +P  ++    T   
Sbjct: 158 EEVAAVLKGKGK------IAIMNGQMGHTAQINRTLGNKQVVDQ--YPGMEVVIEGTGGW 209

Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260
                 +   S +          +V  ND   +G + A E  G    +++  GI+G    
Sbjct: 210 SREKGKELMESWIESGQTFD--AVVANNDEMAIGAIMAAEEAGI-VDELVFAGIDGT--P 264

Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320
             L          S+       G    E        +    +         IT+ N  E 
Sbjct: 265 DALDYMSKGKLTISVFQDAKGQGQTGLEQAIKLAKGESA--EKMTNIPYETITKRNVDEY 322

Query: 321 LEK 323
            +K
Sbjct: 323 KKK 325


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional...   274   3e-72
UniRef50_P02924 L-arabinose-binding periplasmic protein n=117 Ta...   266   9e-70
UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional...   264   2e-69
UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-bindi...   264   3e-69
UniRef50_C4XAG8 L-arabinose-binding periplasmic protein n=11 Tax...   259   9e-68
UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostri...   255   1e-66
UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD            250   4e-65
UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepI...   250   5e-65
UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic com...   250   7e-65
UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic com...   249   1e-64
UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium bot...   247   3e-64
UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional...   247   4e-64
UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH             245   2e-63
UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional...   245   2e-63
UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional...   244   3e-63
UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=...   243   5e-63
UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic com...   242   2e-62
UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Prote...   241   2e-62
UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Therm...   241   2e-62
UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-bin...   239   1e-61
UniRef50_A9CF36 ABC transporter, substrate binding protein (Suga...   237   3e-61
UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Prot...   237   4e-61
UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyado...   236   8e-61
UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n...   236   9e-61
UniRef50_B8D164 ABC-type sugar transport system, periplasmic com...   236   9e-61
UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional...   236   1e-60
UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protei...   235   1e-60
UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clo...   235   2e-60
UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding...   235   2e-60
UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostri...   235   2e-60
UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gamm...   232   1e-59
UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkh...   231   2e-59
UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional...   231   2e-59
UniRef50_C1DLC8 ABC transporter substrate binding protein n=3 Ta...   231   2e-59
UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotr...   231   2e-59
UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional...   231   2e-59
UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerot...   231   3e-59
UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional...   231   3e-59
UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport ...   229   1e-58
UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional...   228   2e-58
UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostri...   228   2e-58
UniRef50_B3T6P5 Putative periplasmic binding protein and sugar b...   228   2e-58
UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional...   228   2e-58
UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional...   228   3e-58
UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 ...   227   3e-58
UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_...   226   6e-58
UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional...   226   7e-58
UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional...   226   7e-58
UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n...   225   1e-57
UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostr...   225   2e-57
UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding...   225   3e-57
UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 T...   224   3e-57
UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostri...   224   3e-57
UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chtho...   224   4e-57
UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminoc...   224   5e-57
UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional...   223   6e-57
UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional...   223   8e-57
UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional...   223   9e-57
UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional...   223   1e-56
UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S4...   222   1e-56
UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter...   222   1e-56
UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Cor...   222   1e-56
UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpe...   222   2e-56
UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional...   221   2e-56
UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Paste...   221   2e-56
UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional...   221   2e-56
UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional...   221   3e-56
UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional...   220   4e-56
UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding...   220   5e-56
UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional...   220   5e-56
UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Rumin...   220   6e-56
UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic suga...   220   7e-56
UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional...   220   8e-56
UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transpo...   219   9e-56
UniRef50_B2IIE3 Periplasmic binding protein/LacI transcriptional...   219   1e-55
UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostri...   219   1e-55
UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional...   219   1e-55
UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional...   218   3e-55
UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothe...   218   3e-55
UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geo...   218   3e-55
UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostri...   217   4e-55
UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea f...   217   4e-55
UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasm...   217   5e-55
UniRef50_UPI0001B4C057 putative D-ribose-binding protein compone...   216   6e-55
UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales Rep...   216   9e-55
UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizo...   216   1e-54
UniRef50_B0NBQ1 Putative uncharacterized protein n=1 Tax=Clostri...   215   2e-54
UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=...   215   2e-54
UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional...   215   2e-54
UniRef50_UPI000185D1D6 putative DNA-binding response regulator/s...   215   2e-54
UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8...   215   2e-54
UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional...   215   2e-54
UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n...   215   2e-54
UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional...   214   3e-54
UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional...   214   4e-54
UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional...   214   4e-54
UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional...   214   5e-54
UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia...   214   5e-54
UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional...   213   7e-54
UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-b...   213   7e-54
UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacte...   213   8e-54
UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Pr...   213   8e-54
UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Ba...   213   8e-54
UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional...   213   9e-54
UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostri...   213   9e-54
UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE      213   9e-54
UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding...   212   1e-53
UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional...   212   1e-53
UniRef50_P39325 ABC transporter periplasmic-binding protein ytfQ...   212   1e-53
UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter...   212   1e-53
UniRef50_B0PA90 Putative uncharacterized protein n=1 Tax=Anaerot...   212   2e-53
UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clo...   212   2e-53
UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sora...   212   2e-53
UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostri...   212   2e-53
UniRef50_C6V848 D-ribose-binding periplasmic protein n=11 Tax=Ga...   212   2e-53
UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional...   212   2e-53
UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional...   211   2e-53
UniRef50_B1Y299 Periplasmic binding protein/LacI transcriptional...   211   3e-53
UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional...   211   3e-53
UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional...   211   3e-53
UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantel...   211   4e-53
UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea D...   211   4e-53
UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-bindin...   210   4e-53
UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding prot...   210   4e-53
UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotro...   210   5e-53
UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional...   210   5e-53
UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport ...   210   5e-53
UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional...   210   5e-53
UniRef50_B9L479 Periplasmic binding protein/LacI transcriptional...   210   6e-53
UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-bindi...   210   8e-53
UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3...   209   1e-52
UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-...   209   1e-52
UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor h...   209   1e-52
UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alph...   208   2e-52
UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gamma...   208   2e-52
UniRef50_D2QME7 Two component transcriptional regulator, AraC fa...   208   2e-52
UniRef50_UPI0001B51147 putative ABC transporter substrate-bindin...   207   4e-52
UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional...   207   4e-52
UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding pro...   207   4e-52
UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding...   207   4e-52
UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacte...   207   4e-52
UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostri...   207   4e-52
UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Prot...   207   4e-52
UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacte...   207   5e-52
UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transc...   207   5e-52
UniRef50_D1AIH6 Galactose-binding protein n=3 Tax=Bacteria RepID...   207   5e-52
UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Glu...   207   6e-52
UniRef50_C0C2H6 Putative uncharacterized protein n=1 Tax=Clostri...   206   6e-52
UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protei...   206   8e-52
UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional...   206   9e-52
UniRef50_A6DJR9 Periplasmic binding protein/LacI transcriptional...   206   1e-51
UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-bindi...   205   1e-51
UniRef50_B1ZN56 Periplasmic binding protein/LacI transcriptional...   205   2e-51
UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter au...   205   2e-51
UniRef50_B5YAA5 ABC transporter sugar-binding protein n=2 Tax=Di...   205   2e-51
UniRef50_Q1M6L8 Putative substrate-binding component of ABC tran...   205   2e-51
UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostri...   205   2e-51
UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminoc...   205   2e-51
UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea l...   205   3e-51
UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette tran...   205   3e-51
UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthroba...   205   3e-51
UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostri...   204   4e-51
UniRef50_C2KUT6 Galactoside ABC superfamily ATP binding cassette...   204   5e-51
UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-bindin...   203   6e-51
UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional...   203   6e-51
UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia...   203   6e-51
UniRef50_A6M1Q7 D-galactose-binding periplasmic protein n=4 Tax=...   203   7e-51
UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobact...   203   9e-51
UniRef50_C6D2L3 Periplasmic binding protein/LacI transcriptional...   203   9e-51
UniRef50_C5EU51 D-galactose-binding periplasmic protein n=4 Tax=...   202   1e-50
UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasm...   202   1e-50
UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional...   202   1e-50
UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostri...   202   2e-50
UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostri...   202   2e-50
UniRef50_C8P3T0 D-galactose-binding periplasmic protein n=1 Tax=...   201   2e-50
UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyr...   201   2e-50
UniRef50_Q3JM30 L-arabinose ABC transporter, periplasmic L-arabi...   201   3e-50
UniRef50_C7G6J4 Putative galactose ABC transporter, periplasmic ...   201   3e-50
UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostri...   201   3e-50
UniRef50_Q2T4S7 L-arabinose ABC transporter, periplasmic L-arabi...   201   3e-50
UniRef50_C6D2L0 Periplasmic binding protein/LacI transcriptional...   201   3e-50
UniRef50_UPI00016C56B8 bifunctional carbohydrate binding and tra...   201   4e-50
UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostri...   200   4e-50
UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9...   200   5e-50
UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Rei...   200   6e-50
UniRef50_B5XZZ5 Sugar ABC transporter, periplasmic sugar-binding...   200   6e-50
UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DS...   199   7e-50
UniRef50_Q2YI92 Putative two-component system sensor histidine k...   199   8e-50
UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostri...   199   8e-50
UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional...   199   9e-50
UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Ta...   199   9e-50
UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional...   199   9e-50
UniRef50_A9GMT2 Put. D-ribose-binding periplasmic protein n=2 Ta...   199   1e-49
UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 1820...   199   1e-49
UniRef50_A6W303 Periplasmic binding protein/LacI transcriptional...   199   1e-49
UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Str...   199   1e-49
UniRef50_A0R773 Sugar ABC transporter substrate-binding protein ...   199   2e-49
UniRef50_B2JDH5 Periplasmic binding protein/LacI transcriptional...   199   2e-49
UniRef50_C5EPY5 ABC-type sugar transport system n=2 Tax=Clostrid...   198   2e-49
UniRef50_B2SY92 Periplasmic binding protein/LacI transcriptional...   198   2e-49
UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor h...   198   2e-49
UniRef50_C6L1I6 ABC sugar transport system, periplasmic protein ...   198   2e-49
UniRef50_A1WJI7 Periplasmic binding protein/LacI transcriptional...   198   2e-49
UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostri...   198   2e-49
UniRef50_Q7CTE3 ABC transporter, substrate binding protein (Ribo...   198   3e-49
UniRef50_C4FY38 Putative uncharacterized protein n=1 Tax=Catonel...   198   3e-49
UniRef50_B5GKD2 D-ribose ABC transporter permease protein n=1 Ta...   197   4e-49
UniRef50_C9LY79 Periplasmic ribose-binding protein n=1 Tax=Selen...   197   4e-49
UniRef50_A9BGQ4 Periplasmic binding protein/LacI transcriptional...   197   4e-49
UniRef50_B2JP41 Periplasmic binding protein/LacI transcriptional...   197   4e-49
UniRef50_A8RTB0 Putative uncharacterized protein n=1 Tax=Clostri...   197   5e-49
UniRef50_B0P6G6 Putative uncharacterized protein n=2 Tax=Bacteri...   197   5e-49
UniRef50_UPI0001C31742 periplasmic binding protein/LacI transcri...   197   5e-49
UniRef50_B5ZNU3 Periplasmic binding protein/LacI transcriptional...   197   6e-49
UniRef50_A9AWB1 Periplasmic binding protein/LacI transcriptional...   197   6e-49
UniRef50_C0C2G7 Putative uncharacterized protein n=1 Tax=Clostri...   197   6e-49
UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_...   196   6e-49
UniRef50_A8SGU5 Putative uncharacterized protein n=1 Tax=Faecali...   196   6e-49
UniRef50_Q0BAE1 Periplasmic binding protein/LacI transcriptional...   196   6e-49
UniRef50_A9HN30 Periplasmic binding protein/LacI transcriptional...   196   6e-49
UniRef50_A5V1R8 Periplasmic binding protein/LacI transcriptional...   196   7e-49
UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodo...   196   7e-49
UniRef50_A7II12 Periplasmic binding protein/LacI transcriptional...   196   8e-49
UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette tr...   196   8e-49
UniRef50_A9AWB0 Periplasmic binding protein/LacI transcriptional...   196   1e-48
UniRef50_Q0SII4 ABC ribose transporter, substrate-binding compon...   195   1e-48
UniRef50_C6CXV0 D-galactose/D-glucose ABC transporter, periplasm...   195   2e-48
UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional...   195   2e-48
UniRef50_B5CR03 Putative uncharacterized protein n=1 Tax=Ruminoc...   195   2e-48
UniRef50_C3MI97 Putative solute-binding component of ABC transpo...   195   2e-48
UniRef50_C5EQH1 D-allose-binding periplasmic protein n=1 Tax=Clo...   195   2e-48
UniRef50_B1LAH5 Periplasmic binding protein/LacI transcriptional...   195   2e-48
UniRef50_A1STY3 Transcriptional regulator, periplasmic binding p...   195   2e-48
UniRef50_A1WJM2 Periplasmic binding protein/LacI transcriptional...   194   2e-48
UniRef50_A1WNV9 Periplasmic binding protein/LacI transcriptional...   194   3e-48
UniRef50_B9JQE2 D-ribose-binding periplasmic protein n=1 Tax=Agr...   194   3e-48
UniRef50_A6BKA3 Putative uncharacterized protein n=6 Tax=Clostri...   194   4e-48
UniRef50_C1D9L7 RbsB protein n=1 Tax=Laribacter hongkongensis HL...   194   4e-48
UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminoc...   194   4e-48
UniRef50_B8ZUE5 Putative D-ribose-binding protein n=2 Tax=Mycoba...   194   4e-48
UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostri...   194   4e-48
UniRef50_B2JTD1 Periplasmic binding protein/LacI transcriptional...   194   4e-48
UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI fa...   194   5e-48
UniRef50_C6C3I7 Periplasmic binding protein/LacI transcriptional...   193   7e-48
UniRef50_B7GJK7 ABC-type sugar transport system, periplasmic com...   193   7e-48
UniRef50_Q4ZU91 Periplasmic binding protein/LacI transcriptional...   193   8e-48
UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional...   193   8e-48
UniRef50_A8RQW7 Putative uncharacterized protein n=1 Tax=Clostri...   193   9e-48
UniRef50_C8WV69 Periplasmic binding protein/LacI transcriptional...   193   9e-48
UniRef50_A4XG54 Periplasmic binding protein/LacI transcriptional...   193   9e-48

Sequences not found previously or not previously below threshold:

>UniRef50_C7REM6 Periplasmic binding protein/LacI transcriptional regulator n=5
           Tax=Firmicutes RepID=C7REM6_ANAPD
          Length = 316

 Score =  274 bits (702), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 105/299 (35%), Gaps = 24/299 (8%)

Query: 17  MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDS 75
            S++    ++K+G  +     P+F +  +  ++A      E VI  A  D     N ++ 
Sbjct: 41  ASETKTDGDMKIGVSLSTLNNPFFVSIREGVEEAAGKENVETVITDAQNDSSTQNNQVED 100

Query: 76  LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135
           L   G    VI   D    +  V KA   ++ VI VD           + V  +     +
Sbjct: 101 LITQGVDLIVINPVDSTAIATSVEKANEANIPVICVDR-----GSDQGELVSFIASNNVE 155

Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195
            G+  G+ + +++ +    ++   +         + R R  G  +A       +  +   
Sbjct: 156 GGKLAGEYILEKVGENAEVIQLEGI-----PGASSTRERGEGFEEATNG----KINLLAS 206

Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255
            T + D         ++L  HP+VK   +   ND   LG   A +  G    D+  +G +
Sbjct: 207 QTANFDRAEGMTVMENLLQAHPDVK--AVFCQNDEMALGASEAIKASG---KDVTIVGFD 261

Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314
           G +    +   +      ++   P   G  + E    ++  +           + LI +
Sbjct: 262 GNED--AIKAVEEGNLSATVAQKPKEMGKLAIETAIKYLKGEEVEETVDS--PLELIKK 316


>UniRef50_P02924 L-arabinose-binding periplasmic protein n=117
           Tax=Gammaproteobacteria RepID=ARAF_ECOLI
          Length = 329

 Score =  266 bits (680), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 329/329 (100%), Positives = 329/329 (100%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK
Sbjct: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60

Query: 61  IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120
           IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG
Sbjct: 61  IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120

Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180
           KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD
Sbjct: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180

Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240
           ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE
Sbjct: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240

Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300
           GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP
Sbjct: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300

Query: 301 PKFTEVTDVVLITRDNFKEELEKKGLGGK 329
           PKFTEVTDVVLITRDNFKEELEKKGLGGK
Sbjct: 301 PKFTEVTDVVLITRDNFKEELEKKGLGGK 329


>UniRef50_C8WRM5 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Alicyclobacillus acidocaldarius RepID=C8WRM5_ALIAD
          Length = 321

 Score =  264 bits (676), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 65/334 (19%), Positives = 114/334 (34%), Gaps = 40/334 (11%)

Query: 1   MHKFTKALA-----AIGLAAVMS--------------QSAMAENLKLGFLVKQPEEPWFQ 41
           M ++T  LA     A  LA   +               +A  + +KLGF V     P+F 
Sbjct: 1   MKRWTAMLAVGVVAAGVLAGCGTSVSTGSQKTNLSNTGTASTKPIKLGFAVSTLNNPFFV 60

Query: 42  TEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAK 100
                  +  K LG +V I     D    LN ++ L        ++   D +  S  V +
Sbjct: 61  AMSNGVQEEAKKLGVQVTILNGNNDPATQLNQVEDLIQQHVNAIILNPTDSQSLSTAVEQ 120

Query: 101 ARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAV 160
           A    + VI +D           +    +   + + G+    EL K +  +G  V+   V
Sbjct: 121 ANRAHIPVITLDRSV-----TKGNVACFIASNSVEAGKMAADELIKALGGKGQVVELQGV 175

Query: 161 MAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVK 220
           +            R  G  + +  A  P  ++    T + D   A +   ++L  HP ++
Sbjct: 176 I-----GTSAEADREKGFDEEIGKA--PGIRVVARQTANFDRSQALNVMQNILQAHPNIQ 228

Query: 221 HWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPD 280
              +   ND   LG ++A +  G    +I  +GI+G               Y  +   P 
Sbjct: 229 G--VFAQNDEMALGALKAIQEAGKH--NIKIVGIDGEKEAVN--DVHKGLLYADIAQQPV 282

Query: 281 VHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314
             G    E     V  +  P +      + L+ +
Sbjct: 283 QEGILGVEYAVKLVEGEKVPKQVNS--PLHLVEK 314


>UniRef50_B9KA11 Ribose ABC transporter, periplasmic ribose-binding protein n=7
           Tax=Bacteria RepID=B9KA11_THENN
          Length = 326

 Score =  264 bits (675), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 64/306 (20%), Positives = 115/306 (37%), Gaps = 14/306 (4%)

Query: 17  MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDS 75
           ++Q       K+  ++     PWF    + A +  + LG+E  I  +  D  K     D+
Sbjct: 25  LAQEQQKPKGKMAIVISTLNNPWFVVLAETAKQRAEQLGYEATIFDSQNDTAKESAHFDA 84

Query: 76  LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135
           + A+G    +    D     A V +A+   + V  VD             V  +      
Sbjct: 85  IIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRGIN----ARGLAVAQIYSDNYY 140

Query: 136 IGERQGQELYKEMQKRGWDVKES-AVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194
            G   G+   K ++++  D KE      +          R+ G    +    +PE ++  
Sbjct: 141 GGVLMGEYFVKFLKEKYPDAKEIPYAELLGILSAQPTWDRSNGFHSVVDQ--YPEFKMVA 198

Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254
             +   D   A+     +L  HPE+K   I   ND+  LG ++A E  G    DI   G 
Sbjct: 199 QQSAEFDRDTAYKVTEQILQAHPEIK--AIWCGNDAMALGAMKACEAAGRT--DIYIFGF 254

Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314
           +G + V    K +      +++  P +    + E    ++  +   P+   VT V L+TR
Sbjct: 255 DGAEDVINAIK-EGKQIVATIMQFPKLMARLAVEWADQYLRGERSFPEIVPVT-VELVTR 312

Query: 315 DNFKEE 320
           +N  + 
Sbjct: 313 ENIDKY 318


>UniRef50_C4XAG8 L-arabinose-binding periplasmic protein n=11 Tax=Enterobacteriaceae
           RepID=C4XAG8_KLEPN
          Length = 326

 Score =  259 bits (663), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 299/326 (91%), Positives = 316/326 (96%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGF+VIK
Sbjct: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFDVIK 60

Query: 61  IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120
           IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVI VDDQFVNAKG
Sbjct: 61  IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVITVDDQFVNAKG 120

Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180
           KPM++VPLVMMAA++IG RQGQELYKEMQKRGWDVK++AVMAITA+ELDTARRRTTGS+D
Sbjct: 121 KPMESVPLVMMAASEIGARQGQELYKEMQKRGWDVKDTAVMAITADELDTARRRTTGSID 180

Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240
           ALKAAGFP+ QIY+VPTKSNDIPGAFDA NSMLVQHP+VKHWLIVGMND+TVLGGVRATE
Sbjct: 181 ALKAAGFPDAQIYRVPTKSNDIPGAFDAGNSMLVQHPQVKHWLIVGMNDNTVLGGVRATE 240

Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300
           GQGFKA D+IGIGINGVDAV+ELSKAQ TGFYGSLLPSPD+HGYK+SEMLYNWV K VEP
Sbjct: 241 GQGFKAPDVIGIGINGVDAVNELSKAQPTGFYGSLLPSPDIHGYKTSEMLYNWVTKGVEP 300

Query: 301 PKFTEVTDVVLITRDNFKEELEKKGL 326
           PKFT VTDVVLITRDNFKEEL KKGL
Sbjct: 301 PKFTAVTDVVLITRDNFKEELAKKGL 326


>UniRef50_A8S312 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8S312_9CLOT
          Length = 346

 Score =  255 bits (653), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 58/310 (18%), Positives = 110/310 (35%), Gaps = 20/310 (6%)

Query: 16  VMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAID 74
             S+    +   +G  +     P+F        KA  + G E+ I  A  D    +  ++
Sbjct: 56  AGSEEGSGKKYVIGLAMNTQTNPFFVDVKDGVQKAADEHGIELYITDAQDDPTIQMKDVE 115

Query: 75  SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134
           +L        +I T D     + +       + V  +D      +    + +  +   A 
Sbjct: 116 NLITKKPDAIIIDTCDSDAIVSSIEACNEAGIPVFTMDR-----EANGGEVISHIGYDAI 170

Query: 135 KIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194
           K G   GQ L   +  +G  V+   +M       + A+ R+ G  + +K    P+ +I  
Sbjct: 171 KSGRMAGQYLVDTLGGKGKIVEIQGIM-----GTNVAQNRSQGFNEVMKDN--PDMEIVA 223

Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254
                 D         ++L  +PE+        ND  +LG + A E  G    +I+ IG 
Sbjct: 224 CQVADFDRAKGMSVMENILQANPEIDGL--YAANDEMLLGALEAMEAAGRT-DEIVKIGC 280

Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314
           + +D   +  KA       ++   P   G       Y+++      P    + D  L+T+
Sbjct: 281 DAIDDTLDAMKA--GKVDATIAEPPFFLGKAILNTAYDYLEGKQVEP--YVILDNQLVTQ 336

Query: 315 DNFKEELEKK 324
           D     + K+
Sbjct: 337 DTVDSLVTKE 346


>UniRef50_Q65E53 RbsB n=6 Tax=Firmicutes RepID=Q65E53_BACLD
          Length = 304

 Score =  250 bits (640), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 60/326 (18%), Positives = 110/326 (33%), Gaps = 35/326 (10%)

Query: 1   MHKFTKALAAIGLAAVMSQS-----------AMAENLKLGFLVKQPEEPWFQTEWKFADK 49
           M K      A+ L  + + S               ++K+G  V   + P+F +      K
Sbjct: 1   MKKTLTVFTALALLFLSACSLEPPEWAKPNKEKGTDIKIGLSVSTLKNPFFVSLKNGVVK 60

Query: 50  AGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKV 108
             K  G EVI   A  D  K  N ++ L   G    +I   D    S  V  A    + V
Sbjct: 61  EAKKQGIEVIVVDAQDDSAKQTNDVEDLLQQGVDALLINPADSSAISTAVQSANSLGIPV 120

Query: 109 IAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANEL 168
           + +D    N K +      LV     K G+     + +++ K     +   V        
Sbjct: 121 VTLDRSAENGKVE-----TLVASDNVKGGQMAADFIVEQLGKGAKVAELEGV-----PGA 170

Query: 169 DTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMN 228
              R R +G           +  +    T   D     +   ++L  +P+++   +   N
Sbjct: 171 SATRERGSGFHKTADD----KLNVIAKQTADFDRTKGLNVMENLLQGNPDIQ--AVFAHN 224

Query: 229 DSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSE 288
           D   LG + A    G    +I+ +G +G +    +   QA     ++   P++ G  + +
Sbjct: 225 DEMALGAIEAIRSSG---KEILVVGFDGNED--AVKAVQAGDMSATIAQQPELIGKLAVQ 279

Query: 289 MLYNWVAKDVEPPKFTEVTDVVLITR 314
              + +         T    + L T+
Sbjct: 280 AARDILNGKKVEK--TIPAPLKLETK 303


>UniRef50_P36949 D-ribose-binding protein n=274 Tax=Bacteria RepID=RBSB_BACSU
          Length = 305

 Score =  250 bits (639), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 59/316 (18%), Positives = 102/316 (32%), Gaps = 34/316 (10%)

Query: 1   MHK---FTKALAAIGLAAVM---------SQSAMAENLKLGFLVKQPEEPWFQTEWKFAD 48
           M K       L+   L A           S S   +   +G  V     P+F +  K  +
Sbjct: 1   MKKAVSVILTLSLFLLTACSLEPPQWAKPSNSGNKKEFTIGLSVSTLNNPFFVSLKKGIE 60

Query: 49  KAGKDLGFEVI-KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMK 107
           K  K  G +VI   A  D  K  + ++ L   G    +I   D    S  V  A    + 
Sbjct: 61  KEAKKRGMKVIIVDAQNDSSKQTSDVEDLIQQGVDALLINPTDSSAISTAVESANAVGVP 120

Query: 108 VIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANE 167
           V+ +D        +      LV     K GE     +  ++ K     +   V       
Sbjct: 121 VVTIDR-----SAEQGKVETLVASDNVKGGEMAAAFIADKLGKGAKVAELEGV-----PG 170

Query: 168 LDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGM 227
               R R +G  +        + Q+    +   D         ++L  HP+++   +   
Sbjct: 171 ASATRERGSGFHNIADQ----KLQVVTKQSADFDRTKGLTVMENLLQGHPDIQ--AVFAH 224

Query: 228 NDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSS 287
           ND   LG + A    G    DI+ IG +G      L+  +      ++   P++ G  ++
Sbjct: 225 NDEMALGALEAINSSG---KDILVIGFDGNKD--ALASIKDRKLSATVAQQPELIGKLAT 279

Query: 288 EMLYNWVAKDVEPPKF 303
           E   + +         
Sbjct: 280 EAADDILHGKKVQKTI 295


>UniRef50_Q2SMT1 ABC-type sugar transport system, periplasmic component n=12
           Tax=Proteobacteria RepID=Q2SMT1_HAHCH
          Length = 309

 Score =  250 bits (638), Expect = 7e-65,   Method: Composition-based stats.
 Identities = 59/324 (18%), Positives = 115/324 (35%), Gaps = 16/324 (4%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-I 59
           M K   ++ A   +A+ + S  A +LK+G  +   ++ +        + A KD   +V I
Sbjct: 1   MKKLALSVLA---SAMFAGSVAAADLKIGVSMAVFDDNFLTALRNGIETAAKDKSVDVQI 57

Query: 60  KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
           +    +    LN I +  ASG    ++   D     +I + A    + +I V+ Q +N  
Sbjct: 58  EDGKNEVGTQLNQIQNFIASGVDAIIVNPVDTDATVSISSDAEAAGIPLIYVNRQPINVN 117

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
             P +    V       G  Q +E+ + +  +G       V+ +       A +RT    
Sbjct: 118 QLPDNQ-AFVASNEEVSGTLQTEEVCRLLGGKGN-----VVVMMGELSNQAAIQRTKDIH 171

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
           D +K       ++    T         D   + L     ++   ++  ND   +G ++A 
Sbjct: 172 DVIKRKECSGMKVVAEQTAEWSRLKGNDLMTNWLSA--GLEFDAVISNNDEMAIGAIQAL 229

Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
           +  G K   ++  GI+         K  +     ++  S    G  + +        +  
Sbjct: 230 KASGRKMDSVVVAGIDATPDALAAMK--SGDLDVTVFQSAKGQGAGAVDAAVRLAKGENV 287

Query: 300 PPKFTEVTDVVLITRDNFKEELEK 323
             K        L+T  N  + L K
Sbjct: 288 DQKVW--VPFELVTPANLDKYLSK 309


>UniRef50_Q7MEU9 ABC-type sugar transport system, periplasmic component n=13
           Tax=Bacteria RepID=Q7MEU9_VIBVY
          Length = 292

 Score =  249 bits (636), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 59/315 (18%), Positives = 119/315 (37%), Gaps = 24/315 (7%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           M K    ++A  L + +S  A A++  +  +V     P+F T    A+   K+LG+ +I 
Sbjct: 1   MKKLATLISAALLTSTVSLGAQAQD-TMAIVVSTLNNPFFVTMKDGAETRAKELGYNLIV 59

Query: 61  -IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
             +  D  K L+ ++ L   G K  +I   D    S  +  A    + V+ +D       
Sbjct: 60  LDSQNDPSKELSNVEDLTIRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDR-----G 114

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
               D V  +       GE  G  + +++ ++   ++   +          AR R  G M
Sbjct: 115 ASRGDVVSHIASDNVVGGEMAGNFIVEKVGEKAKVIQLEGIA-----GTSAARERGEGFM 169

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
           +A+K +     ++        D     +   ++L  +P+V+   +   ND   LG +RA 
Sbjct: 170 NAVKGSH---MELLASQPADFDRTKGLNVMENLLAANPDVQ--AVFAQNDEMALGALRAI 224

Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
           +  G    +++ +G +G D               ++   PD+ G    E     +  +  
Sbjct: 225 QASG---KEVMIVGFDGTDDGIAAVN--RGKLAATIAQQPDLIGALGIETADKVLKGEQV 279

Query: 300 PPKFTEVTDVVLITR 314
                    + ++T+
Sbjct: 280 ED--YIPVPLKVVTK 292


>UniRef50_B1KZY7 D-ribose-binding protein n=3 Tax=Clostridium botulinum
           RepID=B1KZY7_CLOBM
          Length = 336

 Score =  247 bits (632), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 116/342 (33%), Gaps = 36/342 (10%)

Query: 1   MHKF---------TKALAAIGLAAVMSQSAM-------AENLKLGFLVKQPEEPWFQTEW 44
           M K          T  + +  L    S+ +         + + +G  +      +F    
Sbjct: 1   MKKTKKILAVLLSTLLIGSAILTGCGSKESSVDKKDKDPKEVTVGLSLSSLSNAFFIGME 60

Query: 45  KFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARG 103
           K       ++G ++I   A  D  K L+ I+ L        ++   D       V KA+ 
Sbjct: 61  KGVKDKTSEIGCKLIETNANGDIAKQLSDIEDLITKKVDILIVNALDADAIVPAVKKAKE 120

Query: 104 YDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAI 163
            ++ +I +D    +           +     K+GE+  + + K ++ +G +   + V   
Sbjct: 121 ANIPIIFLDRGANSEDM-----TTFLETDNVKMGEQAAELILKALKDKGLNG-GNVVEIE 174

Query: 164 TANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWL 223
                  AR R  G  + +      E +I        +   + +   ++L  +P++    
Sbjct: 175 GLQGTSAARDRGKGFHNVMDK--HKEVKIVAKQAGDFNQEKSMNVMQNILQANPKID--A 230

Query: 224 IVGMNDSTVLGGVRATEGQGF-----KAADIIGIGINGVDAVSELSKAQATGFYGSLLPS 278
           + G ND   +G  +A               I  +GI+G++   E    +      S+   
Sbjct: 231 VFGHNDDCTVGAEKAIIASNRMKPAGDKEHIFVVGIDGINQAIE--SVKKGNIDVSISQD 288

Query: 279 PDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320
           P   G ++ E+    +  +         T    IT+DN  +E
Sbjct: 289 PIGMGVQAVEVGLKAIKGEQVEKHIY--TKFFPITKDNATDE 328


>UniRef50_A6VWG6 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Proteobacteria RepID=A6VWG6_MARMS
          Length = 314

 Score =  247 bits (632), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 63/318 (19%), Positives = 122/318 (38%), Gaps = 17/318 (5%)

Query: 2   HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI 61
             F K+  A  L  + S S +A N  +  +    + P+F+   + AD   K+LG++ +  
Sbjct: 4   KTFLKSCLAATLLTLASTSVLASNGLIAIITPSHDNPFFKAGAEGADAKAKELGYDTLVA 63

Query: 62  AVP-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120
           +   D  K    I++  A  AK  ++   D       + + +   +     D +      
Sbjct: 64  SHDGDVNKQNQLIETAIARQAKAVILDNADADASIGSLERLKKAGIPAFLYDREIN---- 119

Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180
           K    V  ++    +  +  G++  + M   G       V  +       A+ R+ G  D
Sbjct: 120 KTGIAVTQIVSNNFQGAQLAGEKFAELMGDGGEY-----VELLGPESDTNAQVRSEGFHD 174

Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240
            L    FPE ++    + +     AF    S+L  +P +K   ++  NDS  LG   A +
Sbjct: 175 ILD--NFPEFKMVARQSANWSQTEAFSRMESILQANPNIKG--VITGNDSMALGAEAALQ 230

Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300
             G K  D+  +G +G+D V +    + +    +++        + +E    ++      
Sbjct: 231 AAGRK--DVFIVGFDGLDYVRDSI-IKGSNIKATIMQPAYAQAQRVAEQADLYIRTGSTG 287

Query: 301 PKFTEVTDVVLITRDNFK 318
               ++ D VLI   N K
Sbjct: 288 LPEKQLMDCVLIDSSNAK 305


>UniRef50_C1D8A9 RbsB n=14 Tax=Bacteria RepID=C1D8A9_LARHH
          Length = 309

 Score =  245 bits (625), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 57/321 (17%), Positives = 100/321 (31%), Gaps = 29/321 (9%)

Query: 1   MHKFTKALAAIGLAAVMSQS----------AMAENLKLGFLVKQPEEPWFQTEWKFADKA 50
           M           +AA   Q                  +G  V     P+F T  K A++ 
Sbjct: 5   MKSLMAGALVFAVAACSKQGPETAQAPDAGTDGGKPAIGLAVSTQSNPFFVTLKKGAEEE 64

Query: 51  GKDLGFEVI-KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVI 109
            +  G  +I   A  D  K + +I+ L     K  ++   D       V  A    + V+
Sbjct: 65  AQKQGLTLITVDAQDDPAKQIASIEDLIQKKVKVILVNPTDSDAVVGAVKAANAAGIPVV 124

Query: 110 AVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELD 169
            +D      +         V       G+   + L +++  +G  V+   +         
Sbjct: 125 TLDRSVNGGE-----VASHVASDNVAGGKMAAEYLLEKIGNQGDVVELEGI-----PGAS 174

Query: 170 TARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMND 229
            AR R  G  D +  A   + ++        D         ++L  +  VK   +   ND
Sbjct: 175 AARERGQGFHDVIDQA--KDVKVVGRQPADFDRAKGLSVMENILQANKNVKG--VFAHND 230

Query: 230 STVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEM 289
              LG V+A E  G K  D+  +G +  D      KA       ++   P + G  + + 
Sbjct: 231 EMALGAVQALEAAGMK--DVTVVGFDATDDAVNAVKA--GKMSATVAQKPKLIGKTAVDA 286

Query: 290 LYNWVAKDVEPPKFTEVTDVV 310
               +             D+V
Sbjct: 287 AKKIIDGQPVDKSLPVPLDLV 307


>UniRef50_D2QJX6 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Spirosoma linguale DSM 74 RepID=D2QJX6_9SPHI
          Length = 317

 Score =  245 bits (625), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 51/310 (16%), Positives = 104/310 (33%), Gaps = 20/310 (6%)

Query: 14  AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNA 72
            +  SQ    + L +G  +   +  +        DK  +  G E+I   A     K +  
Sbjct: 27  TSETSQDGEGKKLVVGATMLSMQNEFIVNVHDEMDKEAQKAGIELITVDAERSALKQVEQ 86

Query: 73  IDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMA 132
           ++S  A      ++   + +  S  VAKA    + +I V+ +  +           V   
Sbjct: 87  VESFIAQKVDAIIMNPCEVEASSPAVAKALAAKIPIINVNSETSSKPS------AFVGSD 140

Query: 133 ATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQI 192
             +      + +  ++  +G       VM           +R  G+ + LK   +P  ++
Sbjct: 141 DVESARIAMKFIADKLGGKGN-----VVMMHGYMGQAAQIKREQGAREILKQ--YPNLKL 193

Query: 193 YQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGI 252
               T   D   A     + +  +   +   +   ND   LG V+A    G K   +I +
Sbjct: 194 LAHQTGEWDRAKAMSLMENWIQSY-GSQINAVFAHNDEMGLGAVKALTDAGLK-DKVIVV 251

Query: 253 GINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLI 312
            I+ +     L   +      ++  + +  G K+             P     +    L+
Sbjct: 252 SIDAI--PDALQAVKKGSLDATVFQNAEQQGAKAIATAIKAAKGQ--PFDKETLVPFQLV 307

Query: 313 TRDNFKEELE 322
           T+DN  + L+
Sbjct: 308 TKDNLSKFLK 317


>UniRef50_C6QL47 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Geobacillus RepID=C6QL47_9BACI
          Length = 340

 Score =  244 bits (624), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 52/304 (17%), Positives = 106/304 (34%), Gaps = 20/304 (6%)

Query: 22  MAENLKLGFLVKQPEEPWFQTEWKFADKAGK-DLGFEVIK-IAVPDGEKTLNAIDSLAAS 79
            +  + +G  +   ++ W         +  K     EVI   A+ D  K L+ +++    
Sbjct: 53  KSGKIVIGAALPDFDDKWLSYLQDGMKEYEKTQKDVEVIYVDAMNDASKQLSQVENFIQQ 112

Query: 80  GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139
                V+   D      +V KA   ++ ++ V+  F             V   + K G  
Sbjct: 113 KVDAIVLIPVDTVSAPEMVDKANQANIPIVVVNRIFDGVD----KATAYVGSESIKAGIM 168

Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199
           Q +E+ K +  +G        +       +   +RT G+   +K   +P+ ++    T  
Sbjct: 169 QMEEVAKLLNGKGKIA-----IMNGQMGHEAQIKRTEGNKQVIKK--YPDMKVVLEGTAE 221

Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259
            D         + L    ++    +V  ND   +G + A E +G K  D+I  G++    
Sbjct: 222 WDRAKGMSLMENWLQSGKKID--AVVCNNDEMAIGAIMALEDEG-KLDDVIVAGVDATPD 278

Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
             E    +      ++  +    G    E+       +             L+T+DN +E
Sbjct: 279 ALE--YVKEGKLKVTVFQNAKGQGQLGLEVAIKAAKGEKVEK--FNWIPYELVTKDNVEE 334

Query: 320 ELEK 323
            ++K
Sbjct: 335 YIKK 338


>UniRef50_C5VU40 D-ribose-binding protein n=4 Tax=Bacteria RepID=C5VU40_CLOBO
          Length = 307

 Score =  243 bits (622), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 54/308 (17%), Positives = 102/308 (33%), Gaps = 20/308 (6%)

Query: 8   LAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDG 66
           L  +G     ++   A   K+G +V     P+F +  + A+K  K+LG+E+ +  +  D 
Sbjct: 16  LLVLGFVGCSNKHTQAREKKIGMVVSTLNNPFFVSLKEGAEKKSKELGYELLVLDSQNDP 75

Query: 67  EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTV 126
            K  + I+ L   G    ++   D       V  A   ++ VI VD Q         + V
Sbjct: 76  AKERSNIEDLIQGGISVLIVNPTDSDAVINSVQVANKANIPVITVDRQ-----ANGGEVV 130

Query: 127 PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAG 186
             +     K GE     +  E++ +        V           R R  G  + +    
Sbjct: 131 SHIASDNIKGGELASSFIIDELKNK---KDIKVVELQGIPGASATRERGKGFHNIIDKKS 187

Query: 187 FPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA 246
               ++      + D         +++    +     +   ND   LG  +A +    K 
Sbjct: 188 --NLKLISSQAANFDRAQGLSVMENIIQAQSDFD--AVFAHNDEMALGAAKALKTANKK- 242

Query: 247 ADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEV 306
             II +G +G +        + +    ++   P + G  S E                  
Sbjct: 243 --IIVVGFDGDEDAKTAI--EKSEISATVAQQPALMGSTSIETAVKISNGQNISKNI--P 296

Query: 307 TDVVLITR 314
             + LIT+
Sbjct: 297 VKLRLITK 304


>UniRef50_Q03CA2 ABC-type sugar transport system, periplasmic component n=14
           Tax=Lactobacillus RepID=Q03CA2_LACC3
          Length = 319

 Score =  242 bits (618), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 57/342 (16%), Positives = 106/342 (30%), Gaps = 46/342 (13%)

Query: 1   MHKFTKALAAIGLAAVMS----------------------QSAMAENLKLGFLVKQPEEP 38
           M +  K    + + A  +                           ++LK+G  +     P
Sbjct: 1   MKQSLKRFLMVAVVATAALFTLTACGGTGLSSKSDSNTKVTKKAPKDLKVGVSLSTLSNP 60

Query: 39  WFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAI 97
           +F +         K     V +  A  D  K  + I+ L        +I   D    +  
Sbjct: 61  FFVSVRNGIQDLAKKNKTNVQVSDAQNDTAKQNSNIEDLIQKKVDVLIINPVDSSAITPA 120

Query: 98  VAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKE 157
           V  A    + VI VD      K      + LV   +TK G+   + + +++ K     + 
Sbjct: 121 VKDANDAGIPVITVDRSSDGGK-----VLTLVASNSTKGGQMAAKYMIEKLGKDAKIAEL 175

Query: 158 SAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHP 217
             +           R R  G   A K     +  I    T   D         ++L  + 
Sbjct: 176 QGI-----PGASATRERGKGFDGAAKG----KLDIVSKQTAGFDRAKGLTVTENILQGNG 226

Query: 218 EVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLP 277
           ++    I   ND   LG V+A +  G K   I  +G +G      +   +A     ++  
Sbjct: 227 DIVG--IFSQNDEMALGAVQAVKAAGKK---ITIVGFDG--EADGIKAVKAGDMAATVAQ 279

Query: 278 SPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
            P+  G  + +  Y+                + L+T ++  +
Sbjct: 280 KPEEMGRLALQAAYDHFNGKTVKKNVES--PLSLVTTEDANK 319


>UniRef50_Q98LI2 Periplasmic ribose-binding protein n=2 Tax=Proteobacteria
           RepID=Q98LI2_RHILO
          Length = 315

 Score =  241 bits (617), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 111/325 (34%), Gaps = 24/325 (7%)

Query: 3   KFTKALAAIGLAAVMSQSAMA-ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV--- 58
           + T   A + L A+M  + +A + +K+GF       PW     +   K   +   +V   
Sbjct: 9   RTTALAATLVLGAMMPGAVLAQDKIKIGFSQGTMNHPWRVAMVEGNKKYAAEHYPDVDLI 68

Query: 59  IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
           +     D  K +  ++SL A G K  +I     +  + +V +A    +KV+ +D +    
Sbjct: 69  VTDGNNDASKQVADVESLIAQGIKVLMISPLTEQALTPVVKEAMDAGIKVVTLDRKVNTP 128

Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
                     V      +G   G+ L K++  +G       +             R  G 
Sbjct: 129 ------VTVHVGGENLPLGVGAGEFLAKKLNGKGN-----IIELQGTAGASATIDRNKGF 177

Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238
            +A+     P+ ++            A      M+ +    +   +   ND   LG ++ 
Sbjct: 178 AEAIAK--HPDMKVVASQNCDYTRDKAVKFMEDMVQRFGPGQIQAVYAHNDEMALGAIQV 235

Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
            E  G    ++  +GI+G +   E  K        + +        +  E  Y     + 
Sbjct: 236 LEAAGR-LNEVAVVGIDGQETAFEAVK--QGKLAATFVYPFV--APEGIETAYKVAKGEE 290

Query: 299 EPPKFTEVTDVVLITRDNFKEELEK 323
            P   T     V +T DN  + + K
Sbjct: 291 VPETIT--LPTVSVTPDNIADMIGK 313


>UniRef50_Q8RBP9 Periplasmic sugar-binding proteins n=1 Tax=Thermoanaerobacter
           tengcongensis RepID=Q8RBP9_THETN
          Length = 339

 Score =  241 bits (616), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 58/308 (18%), Positives = 112/308 (36%), Gaps = 22/308 (7%)

Query: 20  SAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG-FEVIKIA---VPDGEKTLNAIDS 75
           ++  +   +  +     +  +      A+   K+LG  ++   A     D  + +  ++ 
Sbjct: 43  ASSEKKYNIVLITMDSMDEHWLAVKAGAEAKAKELGNVQLTFRAPAEKADPNEQVRMMED 102

Query: 76  LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135
                A   +I   D    + +V KA    + VI +D      K      V  V     K
Sbjct: 103 AINQKADAILIAPTDQTALTPVVEKAFDAGIPVILIDSPVKTDK-----YVSFVATDNIK 157

Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195
             E    +L + +  +G        +        T   R  G  D LK   +P+ QI   
Sbjct: 158 AAEMAADKLGELLGGKGKIA-----IISAQPGSGTTIMRENGFKDRLKE-KYPDIQIITT 211

Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255
                D   A + A  +L  HP++  +   G N+ + +G   A + +   A  +  +G +
Sbjct: 212 QYSMGDKNRALNQALDILTAHPDLAGF--YGTNEGSTIGIAMAIKQKDL-AGKVKVVGFD 268

Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315
              A     K        S++ +P + GYK  E+  + +     P +    T V ++T+D
Sbjct: 269 ISQATINAIK--ENYIQASMVQNPYMMGYKGVEIAVDKLQGKEVPKRVD--TGVTVMTKD 324

Query: 316 NFKEELEK 323
           N  E +++
Sbjct: 325 NVDEVVKE 332


>UniRef50_A5F1B8 Ribose ABC transporter, periplasmic D-ribose-binding protein n=31
           Tax=Vibrio RepID=A5F1B8_VIBC3
          Length = 294

 Score =  239 bits (611), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 59/311 (18%), Positives = 114/311 (36%), Gaps = 22/311 (7%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           M K T  ++A  L+  +S  A A++  +  ++     P+F T    A+   K+LG+ +I 
Sbjct: 3   MKKLTTLISAALLSTSVSFVAQAQD-TVAIVLSTLNNPFFVTMKDGAEAKAKELGYNLIV 61

Query: 61  -IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
             +  D  K L+ ++ L   G K  +I   D    S  +  A    + V+ +D       
Sbjct: 62  LDSQNDPSKELSNVEDLTVRGVKAILINPTDSDAVSNAIRIANRSKIPVLTLDR-----G 116

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
               + V  +       GE  G  +  ++      ++   +          AR R  G M
Sbjct: 117 ASRGEVVSHIASDNVVGGEMAGHFIEAKIGSDAKVIQLEGIA-----GTSAARERGEGFM 171

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
           +A+K +     Q+        D     +   ++L  +P+V+   +   ND   LG +RA 
Sbjct: 172 NAVKGSK---MQLLASQPADFDRTKGLNVMENLLAANPDVQ--AVFAQNDEMALGALRAI 226

Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
           +  G     ++ +G +G D        +      ++   PD+ G    E     +  +  
Sbjct: 227 QASGKS---VMIVGFDGTDDGIAA--VERGQLAATVAQQPDMIGAIGIETADKMLKGEKV 281

Query: 300 PPKFTEVTDVV 310
                    V+
Sbjct: 282 EAYIPVALKVI 292


>UniRef50_A9CF36 ABC transporter, substrate binding protein (Sugar) n=4 Tax=cellular
           organisms RepID=A9CF36_AGRT5
          Length = 309

 Score =  237 bits (606), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 111/325 (34%), Gaps = 19/325 (5%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEV- 58
           M KF    A   L    + +       +G  +   ++ +            K+L G  + 
Sbjct: 1   MKKFIIGAAMSVLLGTAAHAE-----TVGVSMALFDDNFLTVLRNGMLDYSKELKGVTLQ 55

Query: 59  IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
           ++ A  D  K  + I +  AS     ++   D    +A+   A    + ++ V+ Q VN 
Sbjct: 56  VEDAQNDVAKQQSQIQNFIASKVDAIIVNPVDTDATAAMSKLAADAKIPLVYVNRQPVNV 115

Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
              P D    V    T  G  + +E+ + +  +G      AV+ +       AR RT  +
Sbjct: 116 DSLP-DGQAFVASDETVAGTLEAKEVCRLLGGKGN-----AVIMMGELSNQAARMRTQSA 169

Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238
            D LK        + +  T +       D   + L     ++   ++  ND   +G ++A
Sbjct: 170 KDVLKTDECKGISVVEEQTANWQRTQGSDLVTNWLSS--GIEFNAVIANNDEMAIGAIQA 227

Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
            +  G      +  G++         +A       ++       G  + +     V  D 
Sbjct: 228 LKAAGKDMKSYVVAGVDATQDALAAMQA--GDLDVTVFQDAAGQGKGALDAALKLVKGDK 285

Query: 299 EPPKFTEVTDVVLITRDNFKEELEK 323
              K        L+T +N K+ + K
Sbjct: 286 IEKKVY--IPFQLVTPENVKDYVAK 308


>UniRef50_P49308 Putative rhizopine-binding protein n=37 Tax=Proteobacteria
           RepID=MOCB_RHIME
          Length = 309

 Score =  237 bits (605), Expect = 4e-61,   Method: Composition-based stats.
 Identities = 60/325 (18%), Positives = 111/325 (34%), Gaps = 19/325 (5%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEV- 58
           M KF   +AA  L +  + +       +G  +   ++ +        +   K L G ++ 
Sbjct: 1   MKKFIIGIAAAVLVSTAAHAE-----TIGASMAVFDDKFGTLLRNGMEDYAKTLDGVDLQ 55

Query: 59  IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
           I+ A+ D  K  + I +  A+G    ++   D    + +   A    + ++ V+ + VN 
Sbjct: 56  IEDALNDVAKQQSQIQNFIAAGVDAIIVQPVDTDATTVMSKLAADAGIPLVYVNREPVNI 115

Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
              P      V       G  Q +E+ K +  +G      AV+ +       AR RT   
Sbjct: 116 DTLPEKQ-AFVASNEVDSGTLQTREICKLLDGKGK-----AVVIMGELSNQAARMRTKDI 169

Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238
            D L        +I Q  T +       D   + L     ++   ++  ND   +G ++A
Sbjct: 170 HDVLATDQCKGIEIVQEQTANWQRTQGADLMTNWLSA--GIEFDAVIANNDEMAIGAIQA 227

Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
            +  G     ++  GI+  D       A       S+       G  S +        + 
Sbjct: 228 LKAAGRSMDSVVIGGIDATDDALAAMAA--GELDVSVFQDAVGQGKGSIDAALKLSKGEA 285

Query: 299 EPPKFTEVTDVVLITRDNFKEELEK 323
              K        L+T+ N  E   K
Sbjct: 286 VERKIY--IPFELVTKANLAEFQGK 308


>UniRef50_C6W799 Monosaccharide-transporting ATPase n=1 Tax=Dyadobacter fermentans
           DSM 18053 RepID=C6W799_DYAFD
          Length = 310

 Score =  236 bits (603), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 45/303 (14%), Positives = 104/303 (34%), Gaps = 20/303 (6%)

Query: 21  AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLAAS 79
           +  +NL +G  +   +  +        +   K++G E+I   A     K +  ++S    
Sbjct: 27  SGGDNLVIGATMLSMQNEFIVNVSDAMEAKAKEMGVELITVDAERSALKQVEQVESFIGQ 86

Query: 80  GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139
           G    ++   + +  S  +  A    + +I V+ +              V    T+    
Sbjct: 87  GVDAIIMNPAEVEASSPAIKLAMDAKIPIINVNSE------TSAKPTAFVGSDDTESARI 140

Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199
             + + +++  +G       +M           +R  G+ D LKA   P  ++    +  
Sbjct: 141 AMKYIAEKLGGKGN-----ILMMHGFMGQAAQIKRDNGAKDILKAN--PGLKLLAEQSGE 193

Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259
            D         + +  + + K   I   ND   +G V+A E  G K   ++ + ++ +  
Sbjct: 194 WDRAKGMSLTENWIQSYGD-KINAIFAQNDEMGMGAVKALEAAGLK-GKVLVVSVDAI-- 249

Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
              L   +      ++  +    G K+ E       K+    +   +    L+ + N + 
Sbjct: 250 PDALQAVKKGTLDATVFQNAKEQGGKAIETAVKAAKKEAFEKEV--LIPFQLVDKGNVEG 307

Query: 320 ELE 322
            L+
Sbjct: 308 FLK 310


>UniRef50_Q0SSJ2 Ribose ABC transporter, ribose-binding protein n=10 Tax=Clostridium
           RepID=Q0SSJ2_CLOPS
          Length = 301

 Score =  236 bits (602), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 52/314 (16%), Positives = 101/314 (32%), Gaps = 19/314 (6%)

Query: 2   HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK- 60
             F+  L  + L             K+G ++     P+F      A+K  + LG++++  
Sbjct: 6   KIFSVGLMLMMLMTSFIGCGRDNKPKIGMVLSTLNNPFFVNMKDGAEKEAEKLGYDLVVL 65

Query: 61  IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120
            +  D  K    ++ L   G    +I   D       V  A   ++ VI +D Q      
Sbjct: 66  DSQNDPAKERANVEDLIQLGVIALLINPTDSDAVVKTVEVANKSNIPVITLDRQ-----A 120

Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180
                   +     K GE   + +  + +        + V           R R  G  +
Sbjct: 121 NGGKITSHIASDNIKGGEMAAEYVLDKFKDE--KGPINVVEIQGIPGASATRDRGEGFHN 178

Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240
            +      +     +     D         +++  +P ++  ++   ND   LG V+A +
Sbjct: 179 IMDKND--KFNFISIQAADFDRQKGLQVMENIIQANPNIQ--VVFAHNDEMALGAVKAIK 234

Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300
             G  A   + IG +G D   +     A      +   PD+ G    E+       +   
Sbjct: 235 ASGINA---LVIGFDGNDDAKD--SIDANEMTAIIAQQPDLIGALGVELANKIYKGESIK 289

Query: 301 PKFTEVTDVVLITR 314
            K     D+ + T+
Sbjct: 290 NKIAA--DLKVYTK 301


>UniRef50_B8D164 ABC-type sugar transport system, periplasmic component n=6
           Tax=Bacteria RepID=B8D164_HALOH
          Length = 308

 Score =  236 bits (602), Expect = 9e-61,   Method: Composition-based stats.
 Identities = 65/299 (21%), Positives = 118/299 (39%), Gaps = 21/299 (7%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSL 76
           SQ A+A+++ +G  +   + P++    +  +KA  D G E+I  IA  D  K ++ ++  
Sbjct: 21  SQFALADDITIGASLLTQQHPFYVQLKQAMEKAADDNGVELIVSIANQDLNKQISDVEDF 80

Query: 77  AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136
              G    V+   D K     + KA+   + VI VD        + ++    V       
Sbjct: 81  IVRGVDAIVLSPVDSKGVVGAIIKAKRAGIPVITVDI-----SAEGVEVDAHVATDNYYG 135

Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196
           G   G+ + K +  +G       V  I    + + R R  G  +A+  + +P  +I  + 
Sbjct: 136 GRIAGETMAKVLNGKGQ------VAIIDYPVVQSVRDRVAGFKEAV--SKYPGIEIVAIQ 187

Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256
                 P A + A ++L  HPEV    I G  D   L  V A +  G +  D+  IG +G
Sbjct: 188 PG-ITRPEALNTAQNILQAHPEVDG--IFGFGDDAALASVVAVKSAGME-DDVKVIGFDG 243

Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315
           ++      K + + F   +   P   G    E     +  +    +   +    L T++
Sbjct: 244 MEEARNAVKKEES-FVAVVCQYPGEMGRLGLETALRVIKGEKVEKEIPVLPG--LFTKE 299


>UniRef50_B8HJG2 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Arthrobacter chlorophenolicus A6 RepID=B8HJG2_ARTCA
          Length = 319

 Score =  236 bits (602), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 85/335 (25%), Positives = 132/335 (39%), Gaps = 34/335 (10%)

Query: 1   MHKFTKA---------LAAIGLAAVMSQ----SAMAENL-KLGFLVKQPEEPWFQTEWKF 46
           M +  K          LAA+ LAA  S     +A  + + K+G +V+    P+F    K 
Sbjct: 1   MKQLVKKSAVFTAAVTLAALSLAACSSGDTQPAAKPKKIEKIGLMVQDMSNPFFSAMDKG 60

Query: 47  ADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYD 105
           A +A   +G     + A  D       ID+    G    VI   D       + +A+   
Sbjct: 61  AKEAAASIGATANTQDAQLDLANQNTQIDTFIQQGVNLIVISAVDENGIQPAIERAKQAG 120

Query: 106 MKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITA 165
           + VIAVD    +A          VM  A + GE+  Q L+++M  +G       V+ +  
Sbjct: 121 IIVIAVDTPAKSADAV-------VMTDAVQAGEKSCQYLFEQMGGKGN------VLLVDG 167

Query: 166 NELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIV 225
             L T R R TG  + +K   FP  ++       ND          ML   P+V+   I 
Sbjct: 168 TPLQTIRDRITGCNNVVKK--FPGIKVVGQQASKNDRASGLAVTTDMLTATPDVQG--IF 223

Query: 226 GMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYK 285
           GMND + LG V A +    KA  +   G++G        K   + F G+   +P     K
Sbjct: 224 GMNDPSALGAVLAVQQAH-KAGTVKVTGVDGSPEAVAELKQSGSPFMGTATQNPAEMVRK 282

Query: 286 SSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320
           + E+  N +     P + T +    L+TRD   + 
Sbjct: 283 AVEVAQNIIDNKP-PAETTILIPSELVTRDTVSQY 316


>UniRef50_D2BKS5 Ribose ABC transporter, substrate binding protein n=16
           Tax=Streptococcaceae RepID=D2BKS5_LACLK
          Length = 324

 Score =  235 bits (601), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 55/339 (16%), Positives = 99/339 (29%), Gaps = 43/339 (12%)

Query: 2   HKFTKALAAIGLAAVMSQSA--------------------MAENLKLGFLVKQPEEPWFQ 41
            K T A  A    + ++  +                        L +G  +     P+F 
Sbjct: 5   KKLTFAFVATLAVSTLTACSLYTGIPGRDGKEKVEEVTHKKPNELNIGVSISTTNNPYFV 64

Query: 42  TEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAK 100
           +         K+   ++    A  D    LN + +  +      +I   D       +  
Sbjct: 65  SMNNAIKSMAKEKNTKLTVSDAQNDSATQLNNVQNFISQNVDAILINPVDSDAIVPAIKA 124

Query: 101 ARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAV 160
           A    + VIA+D             +  V       G+   Q + K + K         +
Sbjct: 125 ANNAHIPVIAMDR-----GSNGGTVLTTVASDNVAAGKMAAQAVEKLVGKNVK-----VL 174

Query: 161 MAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVK 220
                        R  G     K  G     I    + + D     +   +ML  H +V+
Sbjct: 175 ELSGTPGASATIDRGKGFNSEAKTLG---LNILSSQSANFDRTTGLNTTQNMLQSHKDVQ 231

Query: 221 HWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPD 280
              I   ND   LG  +A +  G K   I   GI+G     +  KA       ++   P 
Sbjct: 232 --AIFAQNDEMALGAAKAVQATGQK---IAIFGIDGESETHDAIKA--GTMTATIAQQPA 284

Query: 281 VHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
             G  + +  Y++             + + L+ +DN  +
Sbjct: 285 KIGEMALQATYDYYQGKKI--AHMINSPIYLVDKDNVDQ 321


>UniRef50_B1B7W7 D-ribose-binding periplasmic protein n=1 Tax=Clostridium botulinum
           C str. Eklund RepID=B1B7W7_CLOBO
          Length = 325

 Score =  235 bits (600), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 63/338 (18%), Positives = 122/338 (36%), Gaps = 35/338 (10%)

Query: 2   HKFTKALAAIGLAAV-MSQSAMAEN----------LKLGFLVKQPEEPWFQTEWKFADKA 50
            +    +  +G+ +        + +            +  ++K     +++T    A+ A
Sbjct: 4   KRLLGIILTLGMLSCVFGGCGNSADQGKGGEKGKGGNVAVVLKALNSDYWKTVQAGANDA 63

Query: 51  GKDLGFEVIK---IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMK 107
            K+LG +V      A  D     + I+     G    V+    P        KA    + 
Sbjct: 64  AKELGVKVQVLGPNAETDVVGQTSLIEDQIVKGVDALVVAPLQPNAAITTFDKAEKEKIP 123

Query: 108 VIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANE 167
           V+ +D                V       G+  G+ + K+++K      + A++      
Sbjct: 124 VVLIDT-----DANWDKKKSFVGTGNIAAGKLGGEYISKKLKK-----GDEAIIIRGVPG 173

Query: 168 LDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGM 227
             T   RT G+  AL+AAG    ++ ++   +++   A     ++L  HP +K   +   
Sbjct: 174 DRTQDERTQGAQKALEAAG---IKVVEIQPANSEREKAISVMENLLQTHPNIKG--VFCT 228

Query: 228 NDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSS 287
           ND   LG V+A +  G K  +II IG++G      L   +  G  G++  +    G K  
Sbjct: 229 NDEMALGAVKALQQAGKK--NIISIGVDGS--PDALKSIKEGGLTGTVAQNSYDIGKKGV 284

Query: 288 EMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKKG 325
           E     +  +    +    T   L+ + N  E+  K  
Sbjct: 285 ETAVKVLRGEKVETRID--TGTTLVDKQNVNEQEAKLN 320


>UniRef50_Q48J93 Sugar ABC transporter, periplasmic sugar-binding protein n=4
           Tax=Pseudomonas RepID=Q48J93_PSE14
          Length = 308

 Score =  235 bits (600), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 45/315 (14%), Positives = 104/315 (33%), Gaps = 16/315 (5%)

Query: 9   AAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGE 67
             I +  ++S    A + ++G  + + ++ +        ++A +    ++    A  D  
Sbjct: 6   LFIAVLLLVSSQWAAASYRIGVTIARVDDNFMTYVRSGLEEAARKENVQLQFEDAQGDVV 65

Query: 68  KTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVP 127
           + +N +    +      ++   D    + +   A    M ++ V+      +      V 
Sbjct: 66  RQINQVQGFLSQKVDAVIVLPVDTSATANMTRAAVEAKMPLVYVNRHP--DERVLPKGVT 123

Query: 128 LVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGF 187
            V     + G+ Q + L ++M  +G     +  + +     ++   R+ G    LK   +
Sbjct: 124 TVASNDIEAGQLQMRYLAEKMGGKG-----TIALIMGDLAQNSTHDRSEGVKQVLK--DY 176

Query: 188 PEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA 247
           P   I +  T         D  ++ L+         IV  ND   +G   A +  G    
Sbjct: 177 PGITIVEQQTAEWQRNKGMDLTSNWLLAGRTFD--AIVANNDEMAIGAAMALQQAGKAKG 234

Query: 248 DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVT 307
           ++  +GI+G+       K        S+   P      + +     +  +  P       
Sbjct: 235 EVAIVGIDGLPDGLAAIK--RGMLAASVFQDPKAQATTALQSAIKMIKGE--PVDAEVWV 290

Query: 308 DVVLITRDNFKEELE 322
              LIT +      +
Sbjct: 291 PFQLITPEQVAVFEQ 305


>UniRef50_C0C295 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM
           15053 RepID=C0C295_9CLOT
          Length = 330

 Score =  235 bits (599), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 51/304 (16%), Positives = 97/304 (31%), Gaps = 18/304 (5%)

Query: 19  QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLA 77
            S       +G  V      +     +  +K  ++LG +++   A  D +  +  I++L 
Sbjct: 38  ASKKDGGYTIGCTVYYMT-EFVTLMTEGMEKKAEELGCDLVMLDAQQDAQNQITQIENLI 96

Query: 78  ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137
           A      ++   D       +       + ++ V+  F   +         V       G
Sbjct: 97  AQKVDVIIVAAVDSDAILPAIEMCDDAGIPLVGVNMLFNTEEPYH-----YVGPDDVLAG 151

Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT 197
           E + Q    E+   G       V+           +R  G+ + L         +    T
Sbjct: 152 ELEMQNAIDEIGGEGN-----VVILEGPIGQSAQIQRLEGNQNILDKYEGK-INVLADQT 205

Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV 257
            +     A     + L      K   IV  ND   LG ++A E  G     I+  G++ +
Sbjct: 206 ANWSREEALTLVENWLETFSG-KIDAIVAHNDEMALGAIQALEAAGLT-DKIVVTGVDAI 263

Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317
                  K       G++     + G ++ +  Y+ +       K     D+  IT+DN 
Sbjct: 264 LDGCNAVK--DGTLLGTVYQDAGLEGSEAVQKAYDVLEGK-VTEKELSYIDMKWITKDNV 320

Query: 318 KEEL 321
            E L
Sbjct: 321 DELL 324


>UniRef50_A8GZV8 Monosaccharide-transporting ATPase n=29 Tax=Gammaproteobacteria
           RepID=A8GZV8_SHEPA
          Length = 299

 Score =  232 bits (592), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 64/314 (20%), Positives = 119/314 (37%), Gaps = 24/314 (7%)

Query: 2   HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-K 60
           HK +  L+A  L+   S SA A++  +  ++     P+F T    A+    +LG+++I  
Sbjct: 7   HKVSVLLSAALLSVSTSFSASAQDA-IAIVLSTMNNPFFVTMKDGAEAKAAELGYKLIAL 65

Query: 61  IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120
            +  D  K L  ++ L   G K  +I   D    +  +  A   ++ V+ +D        
Sbjct: 66  DSQNDPSKELANVEDLTMRGVKAILINPTDALAVTNAIRTANRANIPVLTLDR-----TA 120

Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180
              D V  +       GE  G+ + +++ K    ++   +          AR R  G  +
Sbjct: 121 AHGDIVSHIASDNIAGGELAGEFIAQQLGKNAKVIQLEGIA-----GTSAARERGEGFSN 175

Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240
           A+ A  F   ++        D     +   +ML  + +V+   +   ND   LG +RA E
Sbjct: 176 AVTANNF---ELLSSQPADFDRSKGLNVMENMLAANGDVQ--AVFAQNDEMALGALRAIE 230

Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300
             G    DI+ IG +G D      + Q      ++   P++ G  +       +   V  
Sbjct: 231 AAG---KDILVIGFDGTDEGIAAVRRQQ--LSATVAQQPELLGATAIMTADRILKGQVVE 285

Query: 301 PKFTEVTDVVLITR 314
                     +IT+
Sbjct: 286 KSIPVAL--KIITQ 297


>UniRef50_B1G1G9 Monosaccharide-transporting ATPase n=1 Tax=Burkholderia graminis
           C4D1M RepID=B1G1G9_9BURK
          Length = 369

 Score =  231 bits (591), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 64/310 (20%), Positives = 119/310 (38%), Gaps = 19/310 (6%)

Query: 21  AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLAAS 79
           A     K+GF V      +F       +K  K+ GF+++   A  D ++ +N   +L + 
Sbjct: 63  AAGGKTKIGFSVSTLNNAFFVGLKAGVEKGAKEQGFDLVQTNANGDAQQQVNDAINLLSQ 122

Query: 80  GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139
           G    V+   D K     V KA   ++ V  +D      K         V      +G+ 
Sbjct: 123 GVTALVLNPIDSKAIIPAVEKANAMNIPVFTLDRGSDGGK-----VTSFVASDNVALGQT 177

Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199
             + +  ++ KR    K + V  I       A  R  G  D +    +P+ ++      +
Sbjct: 178 AAKWIADQLTKRYGSAKGNVVDLIGLVGTTAATDREKGFSDEIAK--YPDIKVVARQEGA 235

Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF-----KAADIIGIGI 254
            D   + +A  ++L ++P++    + G ND   +G  +A +  G          I+ IG 
Sbjct: 236 FDQEKSLNAMTNILQKYPQID--AVFGANDDNTVGAEKAIDNAGRYKPLDDKQHILVIGA 293

Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314
           +G      LS  +A     ++  +P     KS + + ++ AK   P  +      +LI +
Sbjct: 294 DGT--AQALSAIRAGKQDATISQNPIQMAAKSLQFVADYTAKKDVPANYAW--PTLLIDK 349

Query: 315 DNFKEELEKK 324
            N   +  KK
Sbjct: 350 SNIDSDATKK 359


>UniRef50_D1AGX3 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Sebaldella termitidis ATCC 33386 RepID=D1AGX3_SEBTE
          Length = 319

 Score =  231 bits (590), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 111/337 (32%), Gaps = 33/337 (9%)

Query: 1   MHKF-------TKALAAIGLAAV------MSQSAMAENLKLGFLVKQPEEPWFQTEWKFA 47
           M KF         ++ +I L +              + +K+G  +   ++ +        
Sbjct: 1   MKKFRNYVIMGLVSMLSIFLISCSQKGDTADGGQGGKKIKVGVSIANFDDTFLTYMMDGM 60

Query: 48  DKAGKDLG-FEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYD 105
            KA +  G  E+    A  D  K +N +++    G    ++   D      +   A    
Sbjct: 61  KKAAEKEGDIELEFVDAKEDIAKQMNQVENFVTQGKDVIIVVPVDTSAADPMTNAAVTNG 120

Query: 106 MKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITA 165
            K++ V+       G   D    V     K G  Q + L ++M  +G       V+ +  
Sbjct: 121 TKIVYVNRNP----GNLPDGAYYVGSEEKKAGIMQMEYLAEKMGGKGN-----IVILMGK 171

Query: 166 NELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIV 225
            + +   +RT G  +  K   +P+ +I    T             + L ++   +   IV
Sbjct: 172 LDNEGTIKRTEGVEEIAKK--YPDIKILDKQTGLWQRTDGMAKTENWLNKYGN-EINAIV 228

Query: 226 GMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYK 285
             ND   LG V+A +  G     I  IG++          A       ++    D  G  
Sbjct: 229 SNNDDMALGAVQALKDSGKTG--IFVIGVDATPDGLAALAA--GDISATVFQDADGQGGG 284

Query: 286 SSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELE 322
           + E+       +    +        L+T +N  E  +
Sbjct: 285 AVEVAKKAANGETVVKE--TWVPFKLVTPENINEFKK 319


>UniRef50_C1DLC8 ABC transporter substrate binding protein n=3
           Tax=Gammaproteobacteria RepID=C1DLC8_AZOVD
          Length = 315

 Score =  231 bits (590), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 120/320 (37%), Gaps = 22/320 (6%)

Query: 5   TKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL--GFEV-IKI 61
           T+A+    +  +   +A+A +L+LG  V Q +  +     +   +  + +  G  + ++ 
Sbjct: 13  TRAVLFATVLCLAGSTALA-DLRLGVSVGQFDN-YIAYLVRAMQERARQVPGGVTLQVED 70

Query: 62  AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121
           +  D  + L  ++S  A      ++   D      I  +A    + ++ ++ +    +  
Sbjct: 71  SGSDVVRQLGQVESFIAQQVDAIIVNPADTAATGGITERATRAGIPLVYLNSRPEVRE-- 128

Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181
               V  V     ++G+ Q + L ++M  +G        + +     D  R+RT G  D 
Sbjct: 129 FPAGVVFVGTDERRLGQMQMEYLAEKMGGKGDLA-----ILLGRLAHDDTRKRTAGVKDV 183

Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241
           L  A +P+ ++ +  +         D  N+ L    E     +V  ND   +G   A   
Sbjct: 184 L--ARYPQIRVVEEQSGDWQRDKGLDLTNNWLSSGREFD--AVVANNDEMGIGAAMALRQ 239

Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301
            G +  ++   GI+G                 +LL  P   G ++ ++    V KDV   
Sbjct: 240 AGRR--EVSVGGIDGTPDGLAAIA--RGQLAVTLLRDPVAMGEEAVDVALRLVRKDVVQG 295

Query: 302 KFTEVTDVVLITRDNFKEEL 321
                  V LIT DN  +  
Sbjct: 296 DVW--IPVHLITPDNHTQFQ 313


>UniRef50_C9MXF0 Putative uncharacterized protein n=1 Tax=Leptotrichia hofstadii
           F0254 RepID=C9MXF0_9FUSO
          Length = 328

 Score =  231 bits (590), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 118/333 (35%), Gaps = 34/333 (10%)

Query: 1   MHKFTKALAAIGL------------AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFAD 48
           M K    L                 A     +   + +K+  + K  +  ++++    A 
Sbjct: 1   MKKLLLFLVVFAAVLSCGKSEDKKDAGAGKSANSGDKIKIELVSKGYQHEFWRSVEAGAK 60

Query: 49  KAGKDLGFEVIKIAVPD---GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYD 105
           KAG++LG EV  I         K +  +++          I   DP   + +  KA    
Sbjct: 61  KAGEELGVEVNFIGPEKETEIGKQVGMVENAINKKVSALGIAALDPDALAVVAKKAMDAK 120

Query: 106 MKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITA 165
           + V+  D            T   +       G   G++L K +  +G        +    
Sbjct: 121 IPVVTFDSNVKGD-----ITSSFIATDNKVAGAMAGEQLAKLINGKGKVA-----IVSHN 170

Query: 166 NELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIV 225
               TA  R  G  +AL    +P+ +I        D   A      ++  +P++    I 
Sbjct: 171 PGTTTAIEREAGFREALAK--YPDIKILNTQFSDGDKSKALAITLDIINANPDIAG--IY 226

Query: 226 GMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYK 285
           G N+ ++ G  +  E +G     ++ +GI+  + +++    +     G ++  P   GY+
Sbjct: 227 GTNEPSIFGIAKGVEEKGLT-GKVVLVGIDSSEDLAKF--LEKGVISGLVIQDPYNMGYQ 283

Query: 286 SSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318
           + + LY     +    +    T  +L+T++N  
Sbjct: 284 TVQQLYKLSKGEKVEKRID--TGAILVTKENIN 314


>UniRef50_C6B4I0 Periplasmic binding protein/LacI transcriptional regulator n=23
           Tax=Bacteria RepID=C6B4I0_RHILS
          Length = 313

 Score =  231 bits (590), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 57/291 (19%), Positives = 115/291 (39%), Gaps = 18/291 (6%)

Query: 28  LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPD-GEKTLNAIDSLAASGAKGFVI 86
           +  +    + P+F+ E   A+   K+LG+E + +   D   K    ID+    GAK  ++
Sbjct: 30  IAIITPAHDNPFFKAEAVGAEAKAKELGYETLLMTHDDDANKQSEMIDTAIGRGAKAIIL 89

Query: 87  CTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYK 146
                    A V KA+   +    +D +           V  ++    +  +   QE  K
Sbjct: 90  DNAGADASVAAVKKAKDAGIPSFLIDREINATG----VAVAQIVSNNYQGAQLGAQEFVK 145

Query: 147 EMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAF 206
            M ++G       V  +       A  R+ G  D +    +P+ +     + +     A+
Sbjct: 146 LMGEKGNY-----VELVGKESDTNAGIRSQGYHDVID--DYPDLKSVAKQSANWSQTEAY 198

Query: 207 DAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKA 266
               ++L  +P++K   ++  ND+  +G + A +  G K  D+I +G +G + V +    
Sbjct: 199 SKMETILQANPDIKG--VISGNDTMAMGAIAALQAAGRK--DVIVVGFDGSNDVRD--SI 252

Query: 267 QATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317
           ++ G   ++L         + E    ++     P +  ++ D VLI  DN 
Sbjct: 253 KSGGIKATVLQPAYAQAQLAVEQADAYIKNKTTPKEEKQLMDCVLINADNA 303


>UniRef50_B0P8T4 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis
           DSM 17241 RepID=B0P8T4_9FIRM
          Length = 333

 Score =  231 bits (589), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 55/346 (15%), Positives = 109/346 (31%), Gaps = 48/346 (13%)

Query: 1   MHK---FTKALAAIGLAA----VMSQSAMAEN---------------------LKLGFLV 32
           M K      AL A+G+ A      S  A   +                     + +GF  
Sbjct: 7   MKKANMLLAALCAVGMTASLFGCSSGQAQGGDTQPQASAAPAADAASAPQREQIVVGFSN 66

Query: 33  KQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDP 91
                 ++    K   +     G ++I      D       ++     G  G V+C  D 
Sbjct: 67  WSRSFEFYVDLEKGMQEVADAQGVKLITQDPNGDLAAQTKQVEDFITQGVDGIVLCPIDS 126

Query: 92  KLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKR 151
                         + ++  D                +    T  G+   Q + +++   
Sbjct: 127 NAAVTEAETINQAGIPLVTTDIAVAGGD-----VASHIASDNTLGGQLAAQFIGEQLGGT 181

Query: 152 GWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANS 211
           G       V  I    + +   R TG  D +    +P+ +I  V +  +          +
Sbjct: 182 GK------VALINNPTITSLIERETGFTDTMAQ-KYPDIEIVAVQSGESKREKGLSVMEN 234

Query: 212 MLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGF 271
           +L  +P+V+   +  +ND   LG ++A +       DI+ +G +  +   +  K + +  
Sbjct: 235 ILQSNPDVQG--VFAVNDMMGLGALQAVQAAQR--DDIVIVGFDATEEAVKYIK-EGSAL 289

Query: 272 YGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317
             S+  +P   G  + E +   +A +           V L+T  N 
Sbjct: 290 KASVAQNPVELGKTTMETMLKVIAGEQVEKNI--PVPVELVTAGNA 333


>UniRef50_B2IJW8 Periplasmic binding protein/LacI transcriptional regulator n=14
           Tax=Alphaproteobacteria RepID=B2IJW8_BEII9
          Length = 314

 Score =  231 bits (589), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 50/322 (15%), Positives = 102/322 (31%), Gaps = 14/322 (4%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEVI 59
           M +   A       +  + +       +G  +   ++ +           G+ L    V 
Sbjct: 1   MKRILLAAVMAINFSCSAGAES-----IGVSMSAFDDNFLTVLRNALIAHGQSLPNVNVQ 55

Query: 60  K-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
              A  D  +  + + +  ASG    ++   D     AI   A    + ++ V+ Q  N 
Sbjct: 56  MEDAQNDVARQQSQVQNFIASGVSAIIVNPVDTDATEAISKLAADAKVPLVYVNRQPANV 115

Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
              P      +       G  Q QE+ + ++ RG     + V+ +       +R+RT   
Sbjct: 116 DRLPETQ-AFIASDEAVSGTLQAQEVCRLLKARGKGKSANVVVMMGQLSNQASRQRTKDV 174

Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238
            D +        ++ +  T +     A +  ++ L     ++   ++   D   +G ++A
Sbjct: 175 HDVIATPECAFMKVVEEQTANWQRTEAMNLMSNWLSA--GIQFDAVIANADEMAIGAIQA 232

Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
               G    D I  GI+G     EL +        ++       G  + +          
Sbjct: 233 MRSAGLPVKDYIVAGIDGGRDGIELMR--QGYLDVTVFQDAAGQGAGALDTALMLARGKK 290

Query: 299 EPPKFTEVTDVVLITRDNFKEE 320
                T      LIT  N  + 
Sbjct: 291 T--DRTIWVPFQLITPTNVADF 310


>UniRef50_Q7UNV9 Bifunctional carbohydrate binding and transport protein n=1
           Tax=Rhodopirellula baltica RepID=Q7UNV9_RHOBA
          Length = 438

 Score =  229 bits (585), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 51/332 (15%), Positives = 117/332 (35%), Gaps = 29/332 (8%)

Query: 2   HKFTKALAAIGLAAVM--------SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKD 53
            +    ++   L            S +   + L    + K     ++Q+    A++AG++
Sbjct: 110 RRSFCLVSVATLLVCAGCQPPADTSANTGEKELHFAVIPKGTTHIFWQSVKHGAEQAGEE 169

Query: 54  LGFEVIKIA---VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIA 110
           +G ++         D ++ +N +     +   G ++   D       V +A    + V+ 
Sbjct: 170 IGAKITFRGPSKENDRDEQINVVQGFLNARVDGILLAPLDADALVRPVKEASRAGVPVVI 229

Query: 111 VDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDT 170
            D       G   D V  V     + G+  G+ +   + ++G D     ++       ++
Sbjct: 230 FDSGLNTDPG---DFVSYVATDNFEGGKLAGEAMANALGEKGGD----VILLRYEQGSES 282

Query: 171 ARRRTTGSMDALKAAGFPEKQIY-QVPTKSNDIPGAFDAANSMLVQHPE-VKHWLIVGMN 228
             +R  G + ++  A +   ++             A D A ++L +  +       V   
Sbjct: 283 THQREEGFLYSI--AEYSNIRVLSSDQYAGTTTESAIDKAQALLNRFGDEADGICTVC-- 338

Query: 229 DSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSE 288
           + T  G +RA   +   A  +  +  +  D++ E   A        +L  P   GY++ +
Sbjct: 339 EPTAEGALRALRERKL-AGKVKLVTFDSSDSLRESLSA--GEVNAIVLQDPVAMGYQAVK 395

Query: 289 MLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320
            +   +  +   P+    T V + T  N  +E
Sbjct: 396 TMAAHLRGET--PEQFIDTGVFVATAKNQDDE 425


>UniRef50_Q28MQ8 Periplasmic binding protein/LacI transcriptional regulator n=14
           Tax=Alphaproteobacteria RepID=Q28MQ8_JANSC
          Length = 343

 Score =  228 bits (583), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 53/302 (17%), Positives = 109/302 (36%), Gaps = 20/302 (6%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG-FEVI---KIAVPDGEKTLNAI 73
             +A  +   +G ++K     +FQ     A+   ++ G +E++        D E  +NA+
Sbjct: 56  GMAAAQDQPTVGLIMKSLANEFFQNMMVGAEAHAEERGDYELLAVGMQNETDFESQINAV 115

Query: 74  DSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDT-VPLVMMA 132
           ++    G    V+   D +     + +A    + VI  D        +     +  V   
Sbjct: 116 ENFITQGVDAIVVAPADSRAMVRPLRRAMEAGITVINFDVALDTGAMEQQGIELAFVGPD 175

Query: 133 ATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQI 192
                E  G  L + + + G       V+       D A +R  G  DA+   G    ++
Sbjct: 176 NRMGAEMAGNALGEALGEGG-----RVVIIEGNPGADNATQRRLGFEDAIATHG---LEL 227

Query: 193 YQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGI 252
            +  T   +   A     +ML  HP+++   ++  NDS  +G + A +  G    DI+ +
Sbjct: 228 LESRTAHWETEEANQVFAAMLTAHPDLQG--VMAANDSMAIGVIEALDAAGR--DDILVV 283

Query: 253 GINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLI 312
           G + V AV  +   +      ++          + ++    +       +    T + L+
Sbjct: 284 GFDAVPAVLPMI--EDGRMLATVDQFGQAMAANAIDLALEVLETG-VDLEGWVRTPIELV 340

Query: 313 TR 314
           T 
Sbjct: 341 TA 342


>UniRef50_A8RW63 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8RW63_9CLOT
          Length = 375

 Score =  228 bits (582), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 52/301 (17%), Positives = 109/301 (36%), Gaps = 17/301 (5%)

Query: 24  ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAK 82
            +  +G+        +   E        +  GF++I   A  +  K ++ ++ L A    
Sbjct: 87  SDYLIGYSQLANTGTYRIAETNSMKDEAEKRGFKLIVTDAQDNTAKQVSDVEDLIAQNID 146

Query: 83  GFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQ 142
             ++   + +     +  A+   + VI VD       G  +D V  +       G+  G+
Sbjct: 147 LLILSPREFEGLETALQTAKENSVPVILVDRLAKGEAG--VDYVTYIATDFVWEGQAAGE 204

Query: 143 ELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDI 202
            L  +          + +         +A+ R TG    +        +I    T + + 
Sbjct: 205 WLKDKTGG-----TCNIIELTGTVGSSSAQDRATGFAGVVDQNE--GMKIIASQTGNFER 257

Query: 203 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA-ADIIGIGINGVDAVS 261
                   ++L  H   +   +   ND   LG V+A +  G+K   DI+ IGI+G   + 
Sbjct: 258 SEGQKVMENLLQAHGG-EVDAVFCHNDQMALGAVQAIKAAGYKPNEDILVIGIDG--EMD 314

Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEEL 321
                 A     +++ SP ++G  + + +   +A    P     + + V++   N +E +
Sbjct: 315 SFKSVIAGEMSATVVSSP-MYGPITFDTVEKILAGQEVPE--QTIMEGVVVDAGNAQENM 371

Query: 322 E 322
           E
Sbjct: 372 E 372


>UniRef50_B3T6P5 Putative periplasmic binding protein and sugar binding domain of
           the LacI family protein n=1 Tax=uncultured marine
           microorganism HF4000_APKG2K17 RepID=B3T6P5_9ZZZZ
          Length = 302

 Score =  228 bits (582), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 52/321 (16%), Positives = 107/321 (33%), Gaps = 24/321 (7%)

Query: 3   KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA 62
           K  K   A  LA ++   A A+ + L         P++ +  + A +   +LG +++ ++
Sbjct: 2   KLVKLFLASSLAIIIGTLAFADTVLLSMKGPGAGNPFWASVERGAREKAAELGVKIVVLS 61

Query: 63  ---VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
                D +  +N ++     G     I   DP   + ++  AR   + V+ +D + +N  
Sbjct: 62  PPQESDVQSQINQVEDQITKGVTAIAIAVTDPNALAKVIESARSAGIPVVFIDTKGIN-- 119

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
                 V  +        +     +   + +         ++        T + R  G+ 
Sbjct: 120 ----KGVTFIGTDNKAGAKMAADFICDRVSRGSDVAILQGII-----TQSTGKARADGAH 170

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
             LK  G     I      + D         ++L ++ ++K   +   ND+  LG V A 
Sbjct: 171 AGLKGCG---LNIVAEQPANWDRAQGRTVMENILTRNQKLK--AVFASNDNMALGAVEAL 225

Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
           +       D+I +G +            A     ++       G    E           
Sbjct: 226 KDADM-LNDVIVVGFDAN--PDAAKSILAGEMTATIAQFSYNMGAYGVEKALELAKGRSL 282

Query: 300 PPKFTEVTDVVLITRDNFKEE 320
           PP     T  +L+T+ N  + 
Sbjct: 283 PPVVD--TGTLLVTKKNAADF 301


>UniRef50_B9XK02 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=bacterium Ellin514 RepID=B9XK02_9BACT
          Length = 330

 Score =  228 bits (582), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 52/330 (15%), Positives = 116/330 (35%), Gaps = 25/330 (7%)

Query: 6   KALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL---GFEVIKI- 61
               A+ L+++    A  ++  +  + K     ++Q     A KA ++L   G +V  I 
Sbjct: 8   LLTCALFLSSICLSCAADKSYTIAVIPKGTTHEYWQCIHAGAIKAQRELQEKGIKVDLIW 67

Query: 62  ----AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117
                  D ++ +  +++       G V+   D +   A V  A    + V+  D     
Sbjct: 68  KGPLREDDRDQQIQVVENFMTRRVSGMVLAPLDNQAMVAPVNNAIRAKIPVVIFDSALKT 127

Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177
            K      V  V     K G+   + + + ++ +G       ++   A    +   R  G
Sbjct: 128 DK-----YVSFVATDNYKGGQLAAERMGQLLEGKGN-----VILLRYAVGSASTEEREAG 177

Query: 178 SMDALKAAGFPEKQIY-QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 236
            MD LK + FP  ++             A+ A+ ++L +    +   I    +   +   
Sbjct: 178 FMDTLK-SKFPNIKVISSDQHAGATRETAYQASQNLLNRFGH-EVNGIFCPCEPPTVAMA 235

Query: 237 RATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296
           +A    G     +  +G +       +   +     G ++ +P   GY     +   +  
Sbjct: 236 KALRDIGKAGGKVKMVGFDA--GSQSVIDLKNGDVQGLVVQNPLRMGYLGVITMVQHLQG 293

Query: 297 DVEPPKFTEVTDVVLITRDNFKEELEKKGL 326
           +    +    T V ++T +N ++   K+ +
Sbjct: 294 EKVEKRID--TGVQIVTPENMEQAGIKELI 321


>UniRef50_A8GD74 Periplasmic binding protein/LacI transcriptional regulator n=19
           Tax=Enterobacteriaceae RepID=A8GD74_SERP5
          Length = 309

 Score =  228 bits (581), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 53/326 (16%), Positives = 114/326 (34%), Gaps = 23/326 (7%)

Query: 1   MHKFTKALAAIGLAAVMSQSAM-AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-- 57
           M    K L    +   M  +++ A+++K+G  +   ++ +     +      K  G    
Sbjct: 1   MK--LKKLIVTSVLMCMLPASVLAKDIKIGVSMAYFDDNFLTILRQSMQSKMKQDGNVSG 58

Query: 58  VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117
             + A  D  + +  I++  + G    ++   D +    ++  A    + ++ V+ +   
Sbjct: 59  QFEDAKGDIAQQIQQIENFVSQGVDAIILNPVDTQGVKPMIKLAESAKIPLVFVNRRP-- 116

Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177
            +      +  V   +   G+ Q +EL K M  +G       ++ +     +  R RT G
Sbjct: 117 -EVTLPAGMAYVGSDSKLAGKLQMEELAKLMNGKGN-----VMILMGELSNEATRDRTRG 170

Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237
             +   AA +P  +I    T       A D      +   ++    I   ND   +G + 
Sbjct: 171 VEEV--AAKYPGIKILDKQTAKWGRKEAVDITTDWALTGQQID--AIASNNDEMAIGAIL 226

Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
           A +        ++  G++G     E  K        S+       G  + +     V  +
Sbjct: 227 ALKQAKKSG--VLVAGVDGTPDALEYIK--KGDLALSVFQDAKGQGEGAVQTAIQLVKGE 282

Query: 298 VEPPKFTEVTDVVLITRDNFKEELEK 323
                   +    LIT+ N++E  +K
Sbjct: 283 KVESNV--LIPYQLITKANYQEFADK 306


>UniRef50_A4TQ38 Sugar ABC transporter, periplasmic protein n=30 Tax=Proteobacteria
           RepID=A4TQ38_YERPP
          Length = 313

 Score =  227 bits (580), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 51/320 (15%), Positives = 112/320 (35%), Gaps = 18/320 (5%)

Query: 1   MH-KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI 59
           M     K+     L ++   +  A N  +  +    + P+F+ E + A     +LG+  +
Sbjct: 1   MKNTLLKSCLTAALISMAGVAGAASNGLIAIITPSHDNPFFKAEAEGAKAKATELGYTTL 60

Query: 60  KIAVPD-GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
             +  D   K    I++  A  AK  ++           + KA+   +    +D +    
Sbjct: 61  VASHDDDVNKQNQLIETAIARKAKAIILDNAGSDATIGPLKKAKAAGIPAFLIDREINET 120

Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
                  V  ++    +  +   ++    M  +G       +  +       A  R+ G 
Sbjct: 121 G----IAVSQIVSNNYQGAQLGAEKFVTLMGGKGKY-----IELLGRESDTNAHVRSQGY 171

Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238
            D +      + ++    T +     AF+   S+L  +P++    ++  ND+  LG   A
Sbjct: 172 HDVIDE--HSDMKMVAQQTANWSQTEAFNRMESILQANPDITG--VISGNDTMALGAEAA 227

Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
            +  G    D++ +G +G D V +           ++L         +      ++    
Sbjct: 228 LKAAGRN--DVVVVGFDGSDYVRDSI-INNGNIKATVLQPGWAQAQMAVVQADQYLKTGK 284

Query: 299 EPPKFTEVTDVVLITRDNFK 318
              +  ++ D VLI  +N K
Sbjct: 285 TGLEEKQLMDCVLIDENNAK 304


>UniRef50_C3QNV9 Sensor protein n=5 Tax=Bacteroides RepID=C3QNV9_9BACE
          Length = 960

 Score =  226 bits (578), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 60/320 (18%), Positives = 114/320 (35%), Gaps = 26/320 (8%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFA-DKAGKDLGFEV- 58
           M   T     +GLAA       A   ++G      ++ W          +A    G  V 
Sbjct: 8   MKWITVLFCLLGLAACRQD---APRFRIGVAQCS-DDSWRHKMNDEILREAMFYDGVSVE 63

Query: 59  IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
           I+ A  D  K    +      G    +I   +    + IV +A    + VI VD + ++ 
Sbjct: 64  IRSAADDNRKQAEDVHYFIDKGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRKILSD 123

Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
           K         +     +IG   G  +   ++ +G       V          A  R  G 
Sbjct: 124 K-----YTAYIGADNYEIGRAVGNYIASSLKGKGN-----VVELTGLGGSTPAMERHQGF 173

Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238
           M A+  + +P+ ++      + +   A    +SML +HP++    +   ND    G  +A
Sbjct: 174 MAAI--SNYPDIKLIDKADAAWEREPAEVEMDSMLRRHPKID--AVYAHNDRIAPGAYQA 229

Query: 239 TEGQGFKAADIIGIGINGVDA-VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
            +  G +  ++I +GI+ +    + L          + +   +  G K  ++  N + K 
Sbjct: 230 AKKAGRE-KEMIFVGIDALPGKGNGLELVLDNVLDATFIYPTN--GDKVMQLAMNILEKK 286

Query: 298 VEPPKFTEVTDVVLITRDNF 317
             P +   V +  ++ R N 
Sbjct: 287 SYPRE--TVMNTAVVDRTNA 304


>UniRef50_B8I2K0 Periplasmic binding protein/LacI transcriptional regulator n=3
           Tax=Clostridium RepID=B8I2K0_CLOCE
          Length = 333

 Score =  226 bits (578), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 57/349 (16%), Positives = 117/349 (33%), Gaps = 47/349 (13%)

Query: 1   MHKFTKALAAIGLAAVMSQSA-------------------------MAENLKLGFLVKQP 35
           M +    L A  +    +  +                           + + +G  +   
Sbjct: 4   MKRLVAMLVAAIMLITFAACSSDTSKNSSEESKSSDTTKVTETSKPADKKIVVGMTLYSL 63

Query: 36  EEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLG 94
           +  +       A K   +LG E+ I     D    +N ++++ + G    ++   D K  
Sbjct: 64  KNEFTVRLSNAAKKKAAELGVELKIYDGNYDPNTQINQVETMISDGVDAIILNPQDAKAC 123

Query: 95  SAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWD 154
           +  V KA   ++ VI V+ +  + K         V       GE + Q +  ++  +G  
Sbjct: 124 AVAVDKAAAANIPVIGVNTRVDSEK-----LTSYVGSKDVYAGELEMQAIADKIGGKGN- 177

Query: 155 VKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLV 214
                V+            R+ G  + LK   +P+ ++    T +     A     + L 
Sbjct: 178 ----IVILDGPLGQSAQLERSEGIQNVLKK--YPDIKVLAEKTANWSRSEAMTVMENWLQ 231

Query: 215 QHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGS 274
              ++    +V  ND   LG  +A E    K  DI  IG++G+    +    +      +
Sbjct: 232 AFDKID--AVVAENDEMALGARKAIEA---KKLDIPTIGVDGITDALDA--VEKGTLIAT 284

Query: 275 LLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEK 323
           +       G K+ E+       +    ++    D   +T+DN  E  ++
Sbjct: 285 IFQDGAGQGSKALEIAVAKAKGENVDKEYW--IDFEPVTKDNVAEFKQR 331


>UniRef50_D2S5J9 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Geodermatophilus obscurus DSM 43160
           RepID=D2S5J9_9ACTO
          Length = 335

 Score =  226 bits (577), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 63/341 (18%), Positives = 118/341 (34%), Gaps = 35/341 (10%)

Query: 5   TKALAAIGLAAVMSQSAMAEN---------------LKLGFLVKQPEEPWFQTEWKFADK 49
             A   + LA   S +  A +               LK+G+ V   + P++Q+       
Sbjct: 4   LSAACVLALAGCASGAEQAGDVAADGGETTFEAKDPLKIGYSVYDLQNPYWQSYAAGVRA 63

Query: 50  AGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKV 108
             ++ G EV+        ++ ++    L   G    +I    P    + +  A G  + V
Sbjct: 64  GAEEAGIEVVIADQKSSQQEQVSGSLDLINQGISALIITPVQPSALPSTIDAAHGEKIPV 123

Query: 109 IAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANEL 168
           +  D       G   D    ++    + G    + + +++   G        +       
Sbjct: 124 VVADI------GTEGDYDGYILSNNYEGGRLAAEHVVEKLG--GTPGPHQVGVIELHAGS 175

Query: 169 DTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMN 228
                R +G +D L        +I      ++ + G F AA  ML  +PE+   +I   N
Sbjct: 176 VVGEERVSGFVDRLGEEE--NFEIVSSLDGNDTVDGGFTAAQDMLSANPELD--VIYAAN 231

Query: 229 DSTVLGGVRATEGQGFKAAD-IIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSS 287
           D + +G  RA E  G   A+    IG +G D   +L   +     G++   P   G K+ 
Sbjct: 232 DDSAVGASRAMETAGVSVANGFTLIGFDGSDPALDLI--EQGVMSGTVAQDPFGQGQKAV 289

Query: 288 EMLYNWVAKDV----EPPKFTEVTDVVLITRDNFKEELEKK 324
           E     +  +     +    T    V ++T +N  E    +
Sbjct: 290 ETALALLNGEDPGYSDEATKTIYFPVEMVTAENVAEFRASR 330


>UniRef50_A4F8A2 Binding protein/LacI transcriptional regulator n=1
           Tax=Saccharopolyspora erythraea NRRL 2338
           RepID=A4F8A2_SACEN
          Length = 334

 Score =  225 bits (575), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 59/352 (16%), Positives = 116/352 (32%), Gaps = 43/352 (12%)

Query: 1   MHKFTKALAAIGLA-------AVMSQS----------------AMAENLKLGFLVKQPEE 37
           M K T++L A+  A          + S                       +G       E
Sbjct: 1   MRKTTRSLFAMTCAAVAIAAAGCGTTSENTGQVQQQDPTKACKGPDSKYTIGMSQANLAE 60

Query: 38  PWFQTEWKFADKAGKDL-GFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGS 95
           P+     +   KA + +  F+V    A  D  K ++ +++         +I   +    +
Sbjct: 61  PYRVRMDEDIRKAAEKVPQFDVQFADAAKDNSKQVSDVENFMTKKVDLLMISPNEAAPLT 120

Query: 96  AIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDV 155
            +V KA    + V+ +D +              +     +IG + G+     +  +G   
Sbjct: 121 DVVKKAYNEGIPVVVLDRKVEGE-----AFTTYIGADNVQIGRQAGEYFKNTLLPQGGK- 174

Query: 156 KESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQ 215
               V     +    A  R  G M+ +  +     ++        +        +++L  
Sbjct: 175 ---IVQLKGLSGSTPAAEREKGFMEGIAGSK---IEVVDTADGEWERSVGQQKMDALLKA 228

Query: 216 HPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSL 275
           HP+++   +   ND    G   A +  G K  D+  +GI+G+   S   KA   G   + 
Sbjct: 229 HPDIQ--AVYAQNDPMAEGAWLAAQAAGRK--DLKFVGIDGLPIESGGIKAVEQGRLSAT 284

Query: 276 LPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKKGLG 327
              P   G ++ E     +      PK   +    L+TR+N  +   +   G
Sbjct: 285 NLYPTG-GEEAVEAARKLLIDCQPVPKEQTL-PTELVTRENAAQVYTRLNQG 334


>UniRef50_Q97JD5 Periplasmic sugar-binding protein n=1 Tax=Clostridium
           acetobutylicum RepID=Q97JD5_CLOAB
          Length = 319

 Score =  225 bits (574), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 52/334 (15%), Positives = 109/334 (32%), Gaps = 28/334 (8%)

Query: 1   MHKF-----TKALAAIGLAAVMSQSA---MAENLKLGFLVKQPEEPWFQTEWKFADKAGK 52
           M K        A     L A   + +    ++  ++G  +   ++ +        +   K
Sbjct: 1   MKKTSRILIIFAATCFLLTACAQKKSIVYKSKKYRIGLSIPASDDVFRNKIINAMENEAK 60

Query: 53  DLGFE--VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIA 110
           +L     V+  A  D  +  + I +L A      ++   D  L S     A    + +I+
Sbjct: 61  NLPDTDLVVVNAKGDPARQKSQISNLVAQKCNAILVLPVDTLLSSDYTQIANDSGIPIIS 120

Query: 111 VDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDT 170
           V++   N      D    V   +   G  + +   K++  +G       V+       +T
Sbjct: 121 VNNFLKNQD----DAAAYVGSDSITSGIMEAEYAVKQLNGKGN-----VVILKGEPNHET 171

Query: 171 ARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDS 230
           A +RT G    L+   +PE +I                  + +      K   I+  ND 
Sbjct: 172 AIKRTEGFKQVLQ--NYPEIKIIDEQYGDWKRTLGMQITENWIK--NGTKFDAILANNDE 227

Query: 231 TVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEML 290
             +G + A +       ++   GI+       L   +      ++  +    G ++ +  
Sbjct: 228 MAIGAIMALKENNL-INNVFVGGIDAT--PDALKLLKEGSLKVTVFQNAAGQGSEAIKAA 284

Query: 291 YNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKK 324
           Y  V  +    K        L+  ++  + L K+
Sbjct: 285 YKLVKGEKINKKI--FVPYELVVPNDADKYLGKQ 316


>UniRef50_C1XFK3 Monosaccharide ABC transporter substrate-binding protein, CUT2
           family n=5 Tax=Bacteria RepID=C1XFK3_MEIRU
          Length = 330

 Score =  225 bits (573), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 51/331 (15%), Positives = 111/331 (33%), Gaps = 22/331 (6%)

Query: 4   FTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA- 62
               L+ +   A+   +   +   +  +     + ++ T  K A++A K LG E+I    
Sbjct: 10  TVLTLSLLIAVAMYGLAQQQKKYTIALIPGLTTDGFYITMHKGAEEAAKRLGVELIFQGG 69

Query: 63  -VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV----- 116
                   +  ++++ A      +I   D     A + +A    +K+I VD         
Sbjct: 70  PEFSPTTQIPVLNAIIARKPDAILIAPTDRNQLIAPLKRAHEAGIKIITVDTFIGENGQY 129

Query: 117 -NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRT 175
              KG     +  V     + G    + L K + ++G     +         + T  +R 
Sbjct: 130 QTGKGNADFPLAYVASDNVEGGRIAARALAKAIGEKGKVYVSNV-----KPGISTTDQRE 184

Query: 176 TGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG 235
            G  + +K   +P   +       ND   A     + L ++P++    + G N  + +G 
Sbjct: 185 QGFKEEMKK--YPGITVLATQYNDNDANKAASQLAAALARNPDLAG--VFGANLFSAIGA 240

Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295
               +  G K   +     +  +++      +      ++   P   G  + E     + 
Sbjct: 241 ANGVKNAG-KRGAVKVAAFDCPESIIN--DIKGGTIDMAVCQHPAEMGRIAVEWAVKALN 297

Query: 296 KDVEPPKFTEVTDVVLITRDNFKEELEKKGL 326
            +  P ++   T   +I R N      K  +
Sbjct: 298 GEKIPNRY--GTGYTVIDRANVDSAEAKAAI 326


>UniRef50_Q1ASV8 Twin-arginine translocation pathway signal n=1 Tax=Rubrobacter
           xylanophilus DSM 9941 RepID=Q1ASV8_RUBXD
          Length = 338

 Score =  224 bits (572), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 48/315 (15%), Positives = 99/315 (31%), Gaps = 18/315 (5%)

Query: 6   KALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP- 64
                    +        E  +L  +V    + ++ T    A  A + LG  +       
Sbjct: 27  AVFLGGLTTSCGGGGGEGEGYRLALIVGVTGDEFYTTMECGARAAARKLGARLNVQGPEE 86

Query: 65  -DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPM 123
                    ++++  S     +I   D       +  A   D+ V+ VD      +    
Sbjct: 87  FSPAAQTPILNAVVQSNPDAILIAPTDRTAMVGPIQSAVNQDIPVVLVDTTIEKEE---- 142

Query: 124 DTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALK 183
             +  +     + G   G+ L +++  +G       ++      + T  +R  G  +A+K
Sbjct: 143 IALARISSDNVEGGRMAGEALAEQIGGKGK-----VLLISVKPGISTTDQRKQGFEEAIK 197

Query: 184 AAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQG 243
              +P+ +       ++D   A     S L  HP++    I G N  +  G        G
Sbjct: 198 Q--YPDIEYLGTEYCNDDPTQAASITTSTLQAHPDLAG--IFGANVFSGQGAGTGVRQAG 253

Query: 244 FKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKF 303
            K   +  +  +      E    +       +   P+  G +  ++   ++    EP   
Sbjct: 254 -KRDQVSVVAFDASPTQVE--DLRRGNLDVLIAQHPNDIGRRGVQIAVRYLESGEEPENK 310

Query: 304 TEVTDVVLITRDNFK 318
              T    +TRDN  
Sbjct: 311 QITTGFTTVTRDNLD 325


>UniRef50_A8RPX4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8RPX4_9CLOT
          Length = 362

 Score =  224 bits (572), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 46/311 (14%), Positives = 102/311 (32%), Gaps = 20/311 (6%)

Query: 14  AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP---DGEKTL 70
           ++  + S    +  +GF+       +  T    A    +  G ++   A       +  L
Sbjct: 60  SSAEAASGNYGDKTIGFVGMTLNNEYHITLANGAKVEAEAKGVKIEVQAGDQHASADAQL 119

Query: 71  NAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK-GKPMDTVPLV 129
             I+++ A+   G ++         + + K +   + +I +D +  +         +P  
Sbjct: 120 GIIENMIANKVDGILLVPSSSDGLESALTKCKEAGIPIINLDTKLTDESLANVGLDIPFY 179

Query: 130 MMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPE 189
                +  +  G+ + K  +K         +          A  R  G ++         
Sbjct: 180 GTNNYEGAKLAGEYVAKNFEKGTKTAILKGI-----EGQTNAADRYNGFIEG----AGDT 230

Query: 190 KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADI 249
             +    T + ++   + AA +++  +P+V   L    ND+  +G +RA +        I
Sbjct: 231 VTVVAEQTANWEVDQGYTAAQNIISANPDV--ELFFCCNDNMGIGALRAIKEANM-QEQI 287

Query: 250 IGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDV 309
             IG + V     L   +   F  ++   P   G    + +                T  
Sbjct: 288 QIIGFDAVSEALNL--VENGEFLATVAQYPAEMGKLGVDNMLKIFDGGEAES--YIDTGT 343

Query: 310 VLITRDNFKEE 320
            +IT+DN  E 
Sbjct: 344 EVITKDNVGEF 354


>UniRef50_B4DBL5 Monosaccharide-transporting ATPase n=1 Tax=Chthoniobacter flavus
           Ellin428 RepID=B4DBL5_9BACT
          Length = 328

 Score =  224 bits (571), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 49/315 (15%), Positives = 104/315 (33%), Gaps = 19/315 (6%)

Query: 10  AIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP-DGEK 68
           A         +  A    +G  +   + P+F+         GK  G++ + ++   D  K
Sbjct: 25  ASTSTDTQPPTGSASKGTIGVSLLTLDNPFFKVIGDNIVSEGKKRGYDAVVVSGDKDVAK 84

Query: 69  TLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPL 128
             N I           V+   D K    ++ +A    + V  VD          +     
Sbjct: 85  QSNQIKDFIVKKVSAIVLSPCDSKSIVPVIQEANAAGIPVFTVDIPCHEP---GVKIATQ 141

Query: 129 VMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALK---AA 185
           +       G+   + + + + + G       +  +   + ++ + R  G  + +    A 
Sbjct: 142 IATDNYGGGKEAAKAMIEALGEAGGK-----IAILHFKQAESCQLRVKGFREIIDAHNAE 196

Query: 186 GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK 245
           G  +  I             + AA   L  +P++    I  +ND   LG   A E  G K
Sbjct: 197 GKSKVDIVAELESGGAKDQGYKAAEDTLQANPDLHG--IFAINDPAALGARAALEKAG-K 253

Query: 246 AADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTE 305
              ++ +G +G     +  K      Y   +  PD  G +  + +      +  PP+   
Sbjct: 254 TDQVVIVGFDGQPEGKQAIK--EGKIYADPIQFPDKMGAQIVDAIIQQSKGETLPPQM-- 309

Query: 306 VTDVVLITRDNFKEE 320
           +    L  + + +++
Sbjct: 310 LIPTSLYKKADAEKD 324


>UniRef50_A5ZT83 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC
           29174 RepID=A5ZT83_9FIRM
          Length = 324

 Score =  224 bits (571), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 65/328 (19%), Positives = 110/328 (33%), Gaps = 23/328 (7%)

Query: 4   FTKALAAIGLAA---VMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEVI 59
            T A+    LAA    +S +   +   +G       EPW          A +    FEVI
Sbjct: 10  LTAAMGVSVLAAGTVTVSAAEKKDKYVIGMSQCNLGEPWRVAMNDQIAMAAEKHPEFEVI 69

Query: 60  K-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
              A  D  K +  I++    G    +    +    +  V+ A    + VI +D +    
Sbjct: 70  FADAAQDNSKQIADIENFVQMGVDLIITSPNEATPLTNAVSAAYDAGIPVILLDRKIDGD 129

Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
           K         +      +G   G+ +   +   G  V E                R  G 
Sbjct: 130 K-----YTQFIGADNVDMGRIAGEYIADTLLPDGGKVCE----IKGLEGTSGGIDRDNGF 180

Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238
            + +K     + +I  V         A   A  ML  + E+  +L   +ND    G   A
Sbjct: 181 REGIKKND--KIEIVAVNNADWLREKAITVAEEMLQTNDEIDLFL--ALNDPMAEGAYIA 236

Query: 239 TEGQGFKAADIIGIGINGVDAVSELSK-AQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
            +  G +  DI+ +G +G+       +         +        G ++ E  Y  + + 
Sbjct: 237 AKNAGRE-GDILFVGFDGLPTPDGGIRSVMDGRLSMT--QVYPTGGTEAIESAYQLLVEG 293

Query: 298 VEPPKFTEVTDVVLITRDNFKEELEKKG 325
            E  K   +T   ++T DN +E LEK G
Sbjct: 294 KELDKTLTLTS-EIVTPDNAEELLEKFG 320


>UniRef50_C6PN56 Periplasmic binding protein/LacI transcriptional regulator n=3
           Tax=Clostridiales RepID=C6PN56_9CLOT
          Length = 322

 Score =  223 bits (569), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 57/300 (19%), Positives = 106/300 (35%), Gaps = 21/300 (7%)

Query: 22  MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASG 80
             +  K G+       P+FQ   K      +  G ++I      D  K ++ I+ +   G
Sbjct: 37  TKKKHKFGYTCMTMNNPFFQVLEKSIRAEVEKNGDQLITMDPAMDVSKQIDQINDMITQG 96

Query: 81  AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140
            +   +   D +     +   +  ++ +I  D +  +           V       G+  
Sbjct: 97  VEAVFLNPVDWEGVRPGLEALKKANIPIINFDTEVKD----MNYVTAYVGSDNKNAGKVC 152

Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSN 200
           G +L K     G       +  +    +++   R  G   A++        I        
Sbjct: 153 GDDLVKRYPNGGK------IAILNCPTMNSINDRIAGFKSAIEG---KNFTIVAEQDGKG 203

Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260
           D+  +   A+ +L  H ++    I+G ND T LG + A +    K + I+  G++G    
Sbjct: 204 DLQTSMKLADDILQSHSDI--VAIMGGNDPTALGALAACKSA--KQSKILIYGVDGSPDA 259

Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320
            +   A    F G+   SP   G KS+E+ Y  + K     K        LI +DN  + 
Sbjct: 260 KKEI-ASGGQFVGTGAQSPKQIGVKSAELGYKVLNKQNVEKK--TPVQTFLINKDNVSKY 316


>UniRef50_Q2RKU7 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RKU7_MOOTA
          Length = 326

 Score =  223 bits (568), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 52/299 (17%), Positives = 105/299 (35%), Gaps = 24/299 (8%)

Query: 22  MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIAVPDGEKTLNAIDSLAASG 80
            +    +G  +   E  ++    K   +  +   F+ +I  A  D  K L  +       
Sbjct: 50  KSGEKVIGVSLLTREHVFYNLIEKAIQEKAQGYKFKPIIMDASQDSNKQLAQVQDFITQK 109

Query: 81  AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140
               V+        +  V  A+   + V  +D +         D    V       G+  
Sbjct: 110 VDAIVLAPTASAGIAPAVDLAKKAGIPVFTIDIKAEG------DVKSHVATDNYAGGKLA 163

Query: 141 GQELYKE-MQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199
            +   ++ +  +G       V  IT +E+ +   R  G  DAL  A +P  ++  V   S
Sbjct: 164 AKYAAEKVLNGKGK------VAIITYSEVQSCVDREKGFKDAL--AEYPNIKVVDVENCS 215

Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259
                A +    +L++ P++   LI  + D   +G V   +  G    ++  IG +G   
Sbjct: 216 GSAEKAANLTQDILLKFPDLD--LIFAVGDPFAVGAVSTIKAAGR---NVKVIGFDGNPE 270

Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318
             +  K     +   ++  PD  G K  +++ ++      PP+   +    ++   N K
Sbjct: 271 AIQEIK-NHGLWVADVVQHPDQIGGKVIDLIADYFNGKSVPPQV--LIPPTIVDASNAK 326


>UniRef50_C5EHH7 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EHH7_9FIRM
          Length = 330

 Score =  223 bits (568), Expect = 9e-57,   Method: Composition-based stats.
 Identities = 55/309 (17%), Positives = 102/309 (33%), Gaps = 22/309 (7%)

Query: 17  MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEVIK-IAVPDGEKTLNAID 74
               A AE L +G  ++   E +        +   K+    ++I   A    +K  + +D
Sbjct: 37  ADTEAAAEELVIGCTLQNLSEEFMTMLQGAMELQLKNYDNVKLIINDAESQSDKQASQLD 96

Query: 75  SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134
           S  A G    +I   D    ++ V       + VI         +G+       V  +  
Sbjct: 97  SFVAQGVDAVIISPVDADALASAVKTVVDAGIPVITCSADVTGDQGQ-----VWVGSSNE 151

Query: 135 KIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194
             GE + + + +++  +G        +          + R  G    LK   +P+ +I  
Sbjct: 152 NGGEIEMKYVAEKLGGKGKIA-----VLRGPLGAFAEQGRFAGYETVLK--DYPDIEIVF 204

Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254
             T +     A     ++L    E+    IV  ND   LG + A +  G K   I   GI
Sbjct: 205 DQTGNWQREEAMALIENLLTAGTELD--AIVCQNDGMALGALEAVKAAGKK-DQITITGI 261

Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314
           + +  V  L   +A     +        G  + +M       +             L+T+
Sbjct: 262 DAI--VDALDSIKAGELDATCFQDAIGQGTNALDMAVKAARGETVERMD---IPFELVTK 316

Query: 315 DNFKEELEK 323
           DN     ++
Sbjct: 317 DNVDGYYDR 325


>UniRef50_Q3MB45 Periplasmic binding protein/LacI transcriptional regulator n=54
           Tax=Bacteria RepID=Q3MB45_ANAVT
          Length = 343

 Score =  223 bits (568), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 53/296 (17%), Positives = 106/296 (35%), Gaps = 24/296 (8%)

Query: 28  LGFLVKQPEEPWFQTEWKFADKAGKDLGFE----VIKIAVPDGEKTLNAIDSLAASGAKG 83
           +G  +     P+F    + A+K  K +G E     +  +  D  +  N I++  A+    
Sbjct: 62  VGVTLGDLSNPFFVVMAQGAEKEAKKIGGEDVRVTVVSSGYDLNQQFNQIENFVAANTDL 121

Query: 84  FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143
            +I   D K     V +AR     VIAVD           D    V     + GE   Q 
Sbjct: 122 IIINAADSKGIRPAVDQARQAGKVVIAVDTAIE------ADIDATVTTNNVQAGEISCQY 175

Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ-VPTKSNDI 202
           +   ++ +G       V+ +    + +  +R  G +  L    +P+ ++           
Sbjct: 176 IADRLKGKGN------VVIVNGPPVTSVIQRVDGCLKVLAK--YPDIKLLSKDQNAEGSR 227

Query: 203 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSE 262
            G     + +LV  P++    +  +ND + +G   A      K  D   +G++G     E
Sbjct: 228 DGGLRVMSDLLVTFPKID--AVFAINDPSGVGVDLAANQA--KRQDFFIVGVDGAPEAIE 283

Query: 263 LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318
              +  + +  +   +P      + ++  + +     P     +    LIT++N  
Sbjct: 284 AIASGDSLYAATATQNPRGMTQTAIQVGNDILHGKK-PESPNILIPAKLITKENVS 338


>UniRef50_Q65S41 RbsB protein n=8 Tax=Pasteurellaceae RepID=Q65S41_MANSM
          Length = 313

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 44/294 (14%), Positives = 108/294 (36%), Gaps = 16/294 (5%)

Query: 10  AIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI--AVPDGE 67
           +  ++A+ + +  A+  ++  L+K     +F +  + A++  K+   ++I       D  
Sbjct: 13  SALISALPALAFAADKPQIALLMKTLSNEYFISMRQGAEETAKEKNIDLIVQVAEKEDST 72

Query: 68  KT-LNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDT- 125
           +  +  ++++ A      ++   D         KA    + +I +D +      +     
Sbjct: 73  EQLVGLVENMIAKKVDAIIVTPNDSIAFIPAFQKAEKAGIPIIDLDVRLDAKAAEAAGLK 132

Query: 126 VPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAA 185
              V +     G  + + L + + K+G       +       +D   +R  G++ A   A
Sbjct: 133 FNYVGVDNFNGGYLEAKNLAEAIGKKGNVAILEGI-----PGVDNGEQRKGGALKAF--A 185

Query: 186 GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK 245
            +P+ +I    + + +   A     ++L  +P +    I   ND+  +G V A E  G  
Sbjct: 186 EYPDIKIVASQSANWETEQALTVTTNILTANPNING--IFAANDNMAIGAVTAVENAGL- 242

Query: 246 AADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
           A  ++  G +G+     +   +      ++   P      + E     + K   
Sbjct: 243 AGKVLVSGYDGI--PLAIEYVKQGKMQNTIDQLPKKQVAIAIEHALKQINKQEI 294


>UniRef50_Q98J19 Ribose-binding protein of ribose ABC transporter n=4
           Tax=Alphaproteobacteria RepID=Q98J19_RHILO
          Length = 335

 Score =  222 bits (567), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 50/321 (15%), Positives = 93/321 (28%), Gaps = 18/321 (5%)

Query: 2   HKFTKALAAIGLAAVMSQSAMAEN-LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI- 59
            +F     A G   + + S  AE+ L +   V     P+F           +  G  +  
Sbjct: 24  REFLLTSVAAGAMVLAAPSVFAEDKLTILGSVPNLGFPFFVHMLNEIKAEAQAQGVNLTE 83

Query: 60  KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
                   K    I++         VI   D    +  + +A    + V+ +D +    +
Sbjct: 84  SDGQNSATKQTADIEAALVQKVNAIVISPLDVNALAPAIEEAVKAGVPVVTIDRRVDGVQ 143

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
           G     +  V     K GE +   +                          A  R  G  
Sbjct: 144 G----ILAHVGADNVKGGEAEASAMVAAFPNGAKLFH-----LQGQPGAGPAIDRNKGVH 194

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
           + L        QI    T +     A     + L  +   K   I+  ND   LG + A 
Sbjct: 195 NVLDPLKDK-YQIIFEQTANFARAEALSVTEAGLAANG--KPDAIICANDDMALGALEAC 251

Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
                   D+   G + +     L   +     G++   P      + ++   +     E
Sbjct: 252 --AARNFTDVKIYGFDAL--PEALVAVRDGKLAGTVEQFPGQQSRTAVQIAVAYAKNKTE 307

Query: 300 PPKFTEVTDVVLITRDNFKEE 320
           P +   +   ++I +DN  + 
Sbjct: 308 PKEKLVLLTPIVIGKDNLDKA 328


>UniRef50_C5VEK6 D-ribose-binding periplasmic protein n=3 Tax=Corynebacterium
           matruchotii RepID=C5VEK6_9CORY
          Length = 325

 Score =  222 bits (566), Expect = 1e-56,   Method: Composition-based stats.
 Identities = 60/304 (19%), Positives = 103/304 (33%), Gaps = 21/304 (6%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSL 76
           + +  A    + F +     P+F    + A K   +LG  +    A  D     N + + 
Sbjct: 40  TTTGSASAKTITFALSTQANPFFVQMRESAQKKADELGLAINFQDAADDSATQSNQLANA 99

Query: 77  AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136
           AASG    +I   D    +  V +     + V+AVD    NA     +    +       
Sbjct: 100 AASGTGVVIINPTDSDAMAPAVQQLVDEKIPVVAVDRAVNNA-----NVASYIASDNETG 154

Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196
           G++  + L   +   G       ++         +R R  G  + LK    P  ++    
Sbjct: 155 GKQAAKVLSDAINGEGE-----ILVLQGKTGSSASRERGKGFDEGLKDN--PNIKVVAKQ 207

Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256
           T   +     D   ++L  HP VK   I   ND   LG + A         D+  IG +G
Sbjct: 208 TAEFERAKGLDVTTNLLQAHPNVK--AIFAENDEMALGAIEALGS--KAGKDVKVIGFDG 263

Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316
             A   L   +    Y S+   P     ++       +  +    K     +VV  T++N
Sbjct: 264 --AEDALKAIKDGRMYASIAQQPVKMAEQAVIEASKLLKGETATKKMQ--VEVVAATKEN 319

Query: 317 FKEE 320
             + 
Sbjct: 320 VDKF 323


>UniRef50_A9AX36 Monosaccharide-transporting ATPase n=1 Tax=Herpetosiphon
           aurantiacus ATCC 23779 RepID=A9AX36_HERA2
          Length = 335

 Score =  222 bits (566), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 57/320 (17%), Positives = 99/320 (30%), Gaps = 23/320 (7%)

Query: 4   FTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV 63
                       V +  A     K+G ++K     +FQ     A++  +         A 
Sbjct: 33  LLAGCGTTSATPVST--ATPTKPKIGLVMKSLSNEFFQQMQAGAEEYARQNATRFDFTAT 90

Query: 64  P-----DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
                 D    + + + L        V+   D     A VAKA    + VI +D     A
Sbjct: 91  GINDERDFATQIASFERLVNEQYDVIVLAPADSIALVAPVAKAVKAGIVVINIDVALDEA 150

Query: 119 KGKPMDTV-PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177
             K                 +  G+ L K +   G        +     E D A +R  G
Sbjct: 151 TKKAAGIDLAFFGPDNRAGAKMSGEVLAKALGAGGKVA-----VLEGNPEADNAVQRRLG 205

Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237
             DA+         +    +   +         + L ++P+++   I+  NDS   G V+
Sbjct: 206 FDDAIADGS---LNLVVAESGHWETSEGQSITAAWLKKYPDLQG--IMCANDSMAFGAVQ 260

Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
           A E        I  +G + + AV  L K        ++            +  Y  +  +
Sbjct: 261 ALEAANL-LDKIKVVGFDNIPAVQPLIK--DGKMLATVEQYGAQMAAIGMDYGYRTLKGE 317

Query: 298 VEPPKFTEVTDVVLITRDNF 317
                    T++ LIT+DN 
Sbjct: 318 KF--SGWIRTELKLITKDNL 335


>UniRef50_A8GD77 Periplasmic binding protein/LacI transcriptional regulator n=11
           Tax=Proteobacteria RepID=A8GD77_SERP5
          Length = 305

 Score =  221 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 44/322 (13%), Positives = 102/322 (31%), Gaps = 19/322 (5%)

Query: 3   KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-I 61
           K+ K +  +      +         +G  +   ++ +        DK  K  G  V    
Sbjct: 2   KYLKRIVLVAALGCSTSVLAE---TIGVSMAYFDQNFLTIIRHSIDKEAKARGISVQFED 58

Query: 62  AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121
           A  D  +  + + +  ++G    ++   +     AI        + ++ V+    ++K  
Sbjct: 59  ARGDVGRQADQVQNFISAGVDAIIVDPVNSAGTPAITKMVTKAGIPLVYVNRTPGDSKLP 118

Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181
               V  V     + G  Q +EL +    +G        + I       A +RT      
Sbjct: 119 AG--VVFVGSDEKQSGTLQMEELARLANYQGNVA-----VMIGNLTDAGALQRTKDVEQV 171

Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241
           +    +P+ ++ Q  + +       D   + +     +        ND   +G + A + 
Sbjct: 172 VAK--YPKMKVVQKQSANYSRSEGMDLMLNWITNGESIDIVA--ANNDEMAIGAIMALQQ 227

Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301
            G + + ++  GI+       L    +     ++       G  S ++    +  +   P
Sbjct: 228 AGKQGSKVLVGGIDAT--PDGLKALSSGKMQVTVFQDAVGQGKASVDVAQRMIKGEKLDP 285

Query: 302 KFTEVTDVVLITRDNFKEELEK 323
                    L+T  N ++   K
Sbjct: 286 --YYWIPFELVTPANMQKYAAK 305


>UniRef50_B0URJ4 Monosaccharide-transporting ATPase n=6 Tax=Pasteurellaceae
           RepID=B0URJ4_HAES2
          Length = 311

 Score =  221 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 57/325 (17%), Positives = 112/325 (34%), Gaps = 18/325 (5%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           M K   A+   GL  + SQ+ +A+N  +G  +    + W            +      IK
Sbjct: 1   MKKTLLAMLCGGLL-LTSQAVIAKNYVIGAPMNSFADKWQTYLQDAVRDFDEKHDDVQIK 59

Query: 61  --IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
              +  D    +N + +         ++   DP +   I   A+   + +I V+ +  + 
Sbjct: 60  LADSNSDPNIQVNLVQNFIDQNVDALLVVPTDPTVVKRIGVLAKKAGIPLIVVNRKPNDE 119

Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
             +       V     + G  QG  +   +  +  +     ++ +     D   +RT G+
Sbjct: 120 HMQY--VTSFVGSDEIEGGRIQGNFIVNTLAGKNAES----LILLGPLGQDAVTKRTQGN 173

Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238
            +    A     ++        +       A ++L  +  +   +IV  ND   +G + A
Sbjct: 174 EEIF--AQHKNIKVVSKQEGRWERDRGLAIAENVLAGNKGIN--VIVSNNDEMAIGAILA 229

Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
           T   G K  DI  +G++      E       G   ++  S    GY  +EM Y     + 
Sbjct: 230 TRKLGIKDEDITIVGLDATPDALEYL---GKGLDATVFQSAQGQGYTGAEMAYLAAKGEK 286

Query: 299 EPPKFTEVTDVVLITRDNFKEELEK 323
            P    +     L+T D  +E   +
Sbjct: 287 VPS--VKWVPFELVTPDKKEEYQAR 309


>UniRef50_Q01TB6 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Candidatus Solibacter usitatus Ellin6076
           RepID=Q01TB6_SOLUE
          Length = 323

 Score =  221 bits (565), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 57/332 (17%), Positives = 116/332 (34%), Gaps = 16/332 (4%)

Query: 1   MHK---FTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADK-AGKDLGF 56
           M +    T  LA+  L A        +   + F      EP+   +    +K        
Sbjct: 1   MKRRLWMTTGLASAVLLAGCGGEVKKKQFVVAFSQANNAEPYRAAQNALMEKLFAAQPDV 60

Query: 57  E-VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQF 115
           + VI  A  D  K +  +++         ++   +    +A++ +A    + VI ++   
Sbjct: 61  KLVISDAQQDNSKQVAQVETFIRQKPDLLIVAPNERAALTAVMGQAMEAKIPVICLERDI 120

Query: 116 VNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRT 175
                   +    +      IG   GQ +   + K+      + V       ++    R 
Sbjct: 121 -----LQPNYTSYIHSDNVAIGRLAGQFIVGHLTKKYGKPAGNVVAMRGLLGVEGEINRD 175

Query: 176 TGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG 235
            G+ + L    +PE +I   P        A D    +L   P++   ++ G ND   +G 
Sbjct: 176 RGAKEILDK--YPEIKIVADPVADWIQAKAKDRMTEVLRAQPKID--VVYGHNDPMAIGA 231

Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295
               +  G +  ++I +G++G+   +   K    G   +    P     K+ E+    + 
Sbjct: 232 YLGAKELGRE-KEMIFVGVDGLGGPAGGIKKVMDGVLAATFVYPLWV-DKAVEIGTRILR 289

Query: 296 KDVEPPKFTEVTDVVLITRDNFKEELEKKGLG 327
           +    P    V + V++T +N  +  EK  L 
Sbjct: 290 EPGFVPAKDYVLESVMVTTENAPQMYEKFTLT 321


>UniRef50_B2J7A7 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Nostoc punctiforme PCC 73102 RepID=B2J7A7_NOSP7
          Length = 318

 Score =  221 bits (563), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 61/331 (18%), Positives = 106/331 (32%), Gaps = 23/331 (6%)

Query: 1   MHKFT--KALAAIGLAAVMSQSAMAENLK--LGFLVKQPEEPWFQTEWKFADKAGKDLGF 56
           M K     A  AI ++A      + E  K  +GF   +   PW   E     +       
Sbjct: 1   MPKLLVFSAYVAIAISAFSLSGCIREKTKKIVGFSQTENIGPWRIAETNSIKEEAAKHKK 60

Query: 57  E---VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD 113
               +I  A     K    I+ L A       +   + +  +  +  AR   + +  +D 
Sbjct: 61  TYDFLITDAQGQTSKQFADIEDLIARQVDVIFLAPREYEGLTPALEAARAAKIPIFLIDR 120

Query: 114 QFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 173
           +     G+    V  +       G R G+ L K    +      S V          A  
Sbjct: 121 EAAGRPGE--HFVSFLGSDFIAQGRRVGEWLAKATDGK-----ASIVELTGTAGSSVAID 173

Query: 174 RTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVL 233
           R  G  +A+  A +P  +I    T       A     +++          +   ND   L
Sbjct: 174 RAKGFRNAI--ATYPNMKIIATQTADFSRAAAVRVMENIIQA-KGSDITAVYAHNDEMAL 230

Query: 234 GGVRATEGQGFKAADIIGIG-INGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYN 292
           G ++A +  G K    + +G I+G  A  E           S+  +P   G      +  
Sbjct: 231 GAIQALKSAGMKPGKDVMVGSIDGQKAALEAI--IRGELGVSVESNPR-FGPLVFATMEE 287

Query: 293 WVAKDVEPPKFTEVTDVVLITRDNFKEELEK 323
           + A    PP+      +  +T  N K+ + +
Sbjct: 288 YFAGKKIPPRIILKDRLFDVT--NAKDFVNE 316


>UniRef50_A1TPE5 Periplasmic binding protein/LacI transcriptional regulator n=5
           Tax=Bacteria RepID=A1TPE5_ACIAC
          Length = 322

 Score =  220 bits (562), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 63/332 (18%), Positives = 112/332 (33%), Gaps = 20/332 (6%)

Query: 1   MHKFTKALAAIGLA------AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL 54
           M K T+   A  LA       + + +   + + LGF     E  W     +    A +D 
Sbjct: 1   MTKLTRRTLATALACAPVAALLPAAAWAQKPIVLGFSQVGAESEWRTANTESIKSAARDA 60

Query: 55  GFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD 113
           G E+    A    E  + AI S  A                  ++ +A+   + V+  D 
Sbjct: 61  GIELKFSDAQQKQENQIKAIRSFIAQRVDVIAFSPVVESGWEPVLREAKAAKIPVVLTDR 120

Query: 114 QFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 173
                       V  +     + G + G+ L ++M+    DV  + V          A  
Sbjct: 121 AVNTKD--TSLYVTFMGSDFVEEGRKAGRWLVEKMKDAKGDV--NIVELQGTVGSAPAID 176

Query: 174 RTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVL 233
           R  G  + +KA   P+ +I +  T         +   + L      K  ++   ND   +
Sbjct: 177 RKKGFEEVVKAD--PKFKIIRSQTGDFTRAKGKEVMEAFLKA-EGRKINVLYAHNDDMAI 233

Query: 234 GGVRATEGQGFKAA-DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYN 292
           G ++A E  G K   DI  I I+ V    E   A       ++  SP + G +    + +
Sbjct: 234 GAIQAIEEAGLKPGKDITIISIDAVKGAFEAMMA--GKLNVTVECSP-LLGPQLMAAVKD 290

Query: 293 WVAKDVEPPKFTEVTDVVLITRDNFKEELEKK 324
             A    P +      +  +  +   +E  K+
Sbjct: 291 IKAGKTVPKRIVTEEGIFPM--ETAAQEFPKR 320


>UniRef50_B9K719 Sugar ABC transporter, periplasmic sugar-binding protein n=7
           Tax=Thermotogaceae RepID=B9K719_THENN
          Length = 323

 Score =  220 bits (561), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 58/341 (17%), Positives = 110/341 (32%), Gaps = 46/341 (13%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           M K    L+ + +  +         L +G + K    P++    +    AGK LG +   
Sbjct: 1   MRKLLVFLSVVLITGLSLA------LTIGVIGKSV-HPYWSQVEQGVKAAGKALGVDTKF 53

Query: 61  --IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
                 D    L  ++S  A G  G  I   DP      + KA    + VI +D    ++
Sbjct: 54  FVPQKEDINAQLQMLESFIAEGVDGIAIAPSDPTAVIPTIKKALEMGIPVITLDTDSPDS 113

Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
                     +     + G   G  + + +  +G       V+   +     + +R  G 
Sbjct: 114 G-----RYVYIGTDNYQAGYTAGLIMKELLGGKGK-----VVIGTGSLTAMNSLQRIQGF 163

Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWL-IVGMNDSTVLGGVR 237
            DA+  +     +I  +     D   A   A + L  HP++  +  +   N  +      
Sbjct: 164 KDAIADSE---IEIVDILNDEEDGARAVSLAEAALNAHPDLDAFFGVYAYNGPS---QAL 217

Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLY------ 291
             +  G K   +  +  +    +  L   +      ++   P + GY S  +LY      
Sbjct: 218 VVKNAG-KVGKVKIVCFDTTPDI--LQYVKEGVIQATMGQRPYMMGYLSVTVLYLMNKIG 274

Query: 292 ---------NWVAKDVEPPKFTEVTDVVLITRDNFKEELEK 323
                               +   T V ++T +N  E L+K
Sbjct: 275 VQNTLMMLPKVTVDGKV--DYVIDTGVDVVTPENLDEYLKK 313


>UniRef50_C6CIQ9 Periplasmic binding protein/LacI transcriptional regulator n=37
           Tax=Gammaproteobacteria RepID=C6CIQ9_DICZE
          Length = 312

 Score =  220 bits (561), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 72/331 (21%), Positives = 123/331 (37%), Gaps = 21/331 (6%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-I 59
           M K T  LAA     + S  A A+N ++ F       P+     + A KA K+LG  + +
Sbjct: 1   MKKITI-LAAAMAFTMSSGLAQAQNEQIVFSTPNLAMPFEVHMQRTAVKAAKELGVNLQV 59

Query: 60  KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
             +     K +  +++    GA+GFV+   D    S  V + +   + V+ +D      K
Sbjct: 60  LDSQGSSPKQVADLENAITRGAQGFVVSPNDVNAVSGAVTEIQDAKLPVVTLDRSVKTDK 119

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
                 VP       K G+  G  +               V+        +   RT G  
Sbjct: 120 K-----VPHFGANNYKGGQAIGDFVKARFPN-----GADIVLLTGQPGSSSNIERTQGIR 169

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
           D+LKA G    ++    T +           S+L   P+ +  +I+  ND   LG + A 
Sbjct: 170 DSLKAGGSK-YRLVADQTGNWMRSEGMRIVESVLPSLPK-RPQVILSANDDMALGAIEAL 227

Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
           + QG K  +++  G + V     L++ +      +    P   GY  ++ +         
Sbjct: 228 QSQGLKPGEVMVTGFDAV--PEALARVRDGWLAATADQRP---GYAVTQAMTQLTNNIRT 282

Query: 300 PPKFT-EVTDVVLITRDNFKEELEKKGLGGK 329
               T       +IT+DN  +  E+ G  GK
Sbjct: 283 KSAITGADYPPTMITKDNLNDA-ERIGEAGK 312


>UniRef50_C6JDF0 Monosaccharide-transporting ATPase n=1 Tax=Ruminococcus sp.
           5_1_39BFAA RepID=C6JDF0_9FIRM
          Length = 333

 Score =  220 bits (561), Expect = 6e-56,   Method: Composition-based stats.
 Identities = 59/306 (19%), Positives = 107/306 (34%), Gaps = 20/306 (6%)

Query: 16  VMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAID 74
                 +  +L +GF       PW     +   ++  + G   I   A  D    +  I+
Sbjct: 40  SSGSKEIGPDLTVGFAQSGNPNPWMVALTESMQQSADEYGVNYIYTDANDDMATHVANIE 99

Query: 75  SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134
            + A      VI   +     A++ +A    + VI       +A+    + V  V     
Sbjct: 100 DMLAKDLDILVIAPMEDTGLEAVLDEAAEKGVPVIL------SARTTQGEYVTTVYSDQA 153

Query: 135 KIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194
             GER  + + +++           V         +   R  G  D +    +P+ +I  
Sbjct: 154 WEGERCAELIGEKIPD------AKVVELRGIEGTSSVAGREKGFRDVMAE-QYPDMEIVV 206

Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA-DIIGIG 253
             T +     A DA  ++L          +   ND   LG V+A +  G     DI  +G
Sbjct: 207 EQTANFSRQEAMDAMANILQAKGPDAIDAVYCHNDEMALGAVQAIKDAGLTPGEDIQVVG 266

Query: 254 INGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLIT 313
           I+G     EL K  +    G++  SP  HG    E++   +  +    +   +    +IT
Sbjct: 267 IDGQKEAWELVK--SGEMLGTVQCSP-KHGPTVFEVIQKILDGETVQKE--TIVPDQVIT 321

Query: 314 RDNFKE 319
           ++N  E
Sbjct: 322 KENVDE 327


>UniRef50_Q1Z3C1 Putative sugar ABC transporter, periplasmic sugar-binding n=4
           Tax=Vibrionaceae RepID=Q1Z3C1_PHOPR
          Length = 355

 Score =  220 bits (560), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 100/323 (30%), Gaps = 21/323 (6%)

Query: 5   TKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADK-AGKDLGFEVIK-IA 62
                 + L A   + A +   ++G  +   ++ +           A K    E+I   A
Sbjct: 52  LFITGLMALVACGGEKADSNVTRIGVAIPNFDDTFLVNMKDSMSAYAAKQDNLELIFVDA 111

Query: 63  VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122
             D  K L  I +       G ++   +      +        ++++ ++ +        
Sbjct: 112 KEDTVKQLGQIQNFIIQQVDGIILVPVNTDATQPMTDDILKAGIELVYLNRRPT----YL 167

Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182
            D V  V     + GE Q +               +  + +    ++ A  RT G  D  
Sbjct: 168 PDGVAYVGSEELRFGEEQAKYAASH------SDGGNIGIIMGMMTVEAAILRTQGVEDFF 221

Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242
           K    PE  I +  T             + +    ++    I+  ND   LG ++A    
Sbjct: 222 KEK--PEYNIIRKQTALWQRSQGMVVMENWINSGDKLDI--IISNNDDMALGAIQALRAA 277

Query: 243 GFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302
           G K  D I IG++       L   +      ++          + +   + +     P  
Sbjct: 278 G-KLDDTIVIGVDAT--PDGLMAIKNGALDATVFQDGRSQARGAIDAALSGIN--KTPRD 332

Query: 303 FTEVTDVVLITRDNFKEELEKKG 325
                   L+T+DN  E   K+G
Sbjct: 333 KITWIPAELVTKDNLAEFEAKQG 355


>UniRef50_B8H8H8 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Arthrobacter chlorophenolicus A6 RepID=B8H8H8_ARTCA
          Length = 322

 Score =  220 bits (560), Expect = 8e-56,   Method: Composition-based stats.
 Identities = 54/319 (16%), Positives = 104/319 (32%), Gaps = 16/319 (5%)

Query: 5   TKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAV 63
                  G +   S    A+   +G +V   ++P          K   + G ++ I  + 
Sbjct: 19  LTLTGCAGSSNATSSGEAAKTYNIGVVVLDLQDPDLAHMTDAMKKTADEKGVKLNITDSK 78

Query: 64  PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPM 123
            D    LN ++ L        ++   D         +    ++ +  +  +F  A+G  +
Sbjct: 79  KDVGSELNQVEDLLTRQVDAVIMQPLDGDASQNAAKRVIAANIPLFILSTEF--AEGSDV 136

Query: 124 DTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALK 183
                + +  T  G+ Q + L K M   G  V  + V            RR  G    + 
Sbjct: 137 GYKSYIGVDDTVAGQMQAEYLNKLMPNGGNLVFAAGVY-----GASWTDRRKNGFDKTIN 191

Query: 184 AAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQG 243
                  +I            A       L + P  +   +V  ND   +G   A    G
Sbjct: 192 E----NFKIVAEFQAKGSRDDAKRNMEDTLQRFPSGQIDAVVANNDEMAIGAASAIADAG 247

Query: 244 FKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKF 303
             A     +G++G +    L   +      ++       G K+ E++ +++       ++
Sbjct: 248 RTAEFKAVVGVDGTEP--ALQDIEGGTMSATVRQDSAGQGVKAVEVVTDFLNGGNVDNRY 305

Query: 304 TEVTDVVLITRDNFKEELE 322
           T      LIT+DN  E L+
Sbjct: 306 T--LPFTLITKDNLSEFLK 322


>UniRef50_Q7NMF9 Periplasmic sugar binding protein of ABC transport system n=1
           Tax=Gloeobacter violaceus RepID=Q7NMF9_GLOVI
          Length = 317

 Score =  219 bits (559), Expect = 9e-56,   Method: Composition-based stats.
 Identities = 51/295 (17%), Positives = 98/295 (33%), Gaps = 19/295 (6%)

Query: 5   TKALAAIGLAAVMSQSAMAEN-LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV 63
             AL A+ L A     +   N   +G  +   ++ +++   +   +        V   A 
Sbjct: 13  LAALCALVLGACAQNGSEGGNRPVVGVSLLTRQDAFYRELERGLKEEAAKQKLTVRLDAG 72

Query: 64  P-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122
             D  +    +++         V+C  D +     +A+A   D+ V   D +      K 
Sbjct: 73  EFDLARQQGQLENYTVQKVAAIVVCPTDSQGIGPAIARANQADIPVFTADIR-----AKE 127

Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182
              V  +       G   G+   K +  RG       V  I    + +   R  G  +AL
Sbjct: 128 GAVVSHIASDNVAGGRLAGEYAAKRLNGRGQ------VAIIDQPYIQSVIERVRGFEEAL 181

Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242
           K   +P  ++    T       +  AA  +L    ++    +  +ND +  G V A E  
Sbjct: 182 KP--YPNIRVVARLTGDGVRDRSLKAAEDLLQSQRKLD--AVFAVNDESAFGVVSAIEAA 237

Query: 243 GFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
           G K   I  +G +  +   +L     +     +   P   G ++   +   +A  
Sbjct: 238 GRKG--IFVMGYDASEEARKLIAGGKSPLQADIAQDPYRIGQETIRAVATHLAGQ 290


>UniRef50_B2IIE3 Periplasmic binding protein/LacI transcriptional regulator n=11
           Tax=Rhizobiales RepID=B2IIE3_BEII9
          Length = 314

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 52/318 (16%), Positives = 113/318 (35%), Gaps = 11/318 (3%)

Query: 8   LAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV--IKIAVPD 65
             A  LAA+M+ +A AE   +G  ++  ++ +     +        +G     I+ A  D
Sbjct: 5   FTAAVLAALMAGTASAE--TIGVSMQNFDDNFQTLLRQGLQARASQVGGVTLQIEDAQAD 62

Query: 66  GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDT 125
             + LN +++  A+     +I   D    S I A A+   + ++ ++ +  N    P + 
Sbjct: 63  IARQLNQVNNFIAARVDAIIITLTDTSAASGITAAAQKAGIPLVYLNLEPENINRLPKNQ 122

Query: 126 VPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAA 185
              V    T  G    +   + ++K+G   +    + +       +R RT+   + L A 
Sbjct: 123 -AYVGSKETDAGRLGAEAACQLLKKKGKAGQAQIYILMGDLAHQASRDRTSAVKETLAAG 181

Query: 186 GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK 245
                 I    + +     A D   + +     +    I   +D   +G ++A +  G  
Sbjct: 182 ECKGVTIADERSAAWMRTNAMDVTTNWITTGRPID--AIFANSDEMAIGAIQALKAAGVS 239

Query: 246 AADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTE 305
             D+I +G+N   A   L   +    + ++  +       + +                 
Sbjct: 240 KNDVIVVGVNA--AQDGLVAMEDGDLHVTVFQNAKGQSASALDAAVALARGKSV--DRQV 295

Query: 306 VTDVVLITRDNFKEELEK 323
           +    L+T +N  +   K
Sbjct: 296 MVPFELVTPENMAKYNNK 313


>UniRef50_A8RZI4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8RZI4_9CLOT
          Length = 347

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 54/301 (17%), Positives = 110/301 (36%), Gaps = 23/301 (7%)

Query: 21  AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAAS 79
              E+ K GF       P+F    +  ++   + G E+I   A  D +K ++ ++ L   
Sbjct: 63  GGKEHYKFGFAATTMNNPFFHAIQEAIEEVVDENGDELIVIDAQNDAQKQISMVEDLLTQ 122

Query: 80  GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139
           G     +C  D     + + +     + V+  D    +          +++      GE 
Sbjct: 123 GIDLLFLCPIDSASIKSSLEQCGKAGVPVVNFDTDVYDVDLVN----TIIVSDNYYAGEL 178

Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199
             +++ K++ +         V  +T+   +   +R  G  D  KA G+   +I       
Sbjct: 179 VAEDMMKKLPEGSK------VCILTSPSAEACIKRQNGFKD--KADGY--FKIVSEIDGK 228

Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259
            D   +   A  +L  +P++       +ND + +G V+A E Q  K  D++  G++G   
Sbjct: 229 GDTATSLGIAEDVLQGNPDL--GAFYAINDPSAIGCVQALESQ--KKTDVLVYGVDGQPM 284

Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
             +           +   SP   G +S    Y  ++ +        +    LI ++N  E
Sbjct: 285 GKQAIS--EGTMEATAAQSPINIGKESVAAAYKILSGESVEKNI--LVPTFLIDKNNVTE 340

Query: 320 E 320
            
Sbjct: 341 Y 341


>UniRef50_B9Z758 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Lutiella nitroferrum 2002 RepID=B9Z758_9NEIS
          Length = 313

 Score =  219 bits (558), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 57/326 (17%), Positives = 112/326 (34%), Gaps = 25/326 (7%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLK-LGFLVKQPEEPWFQTEWKFADKAGKDLG---F 56
           M+     L A  LA + + S  A  LK +G  V     P+F    K A+ A K +G    
Sbjct: 1   MNLRYTVLTAAVLAGLAAPSFAARPLKSVGVAVGDLANPFFVAIGKGAEDAAKKIGGPGV 60

Query: 57  EVIKIA-VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQF 115
           +V  ++   D    +  I++  A+     ++   DP     ++ KAR   +         
Sbjct: 61  KVTTVSSKYDLNTQVGQIENFIANKVDVILVNASDPMGIEPVLKKARAAGI-------AV 113

Query: 116 VNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRT 175
           V      +     VM      G    + + +++  RG       V+ +    +     R 
Sbjct: 114 VAVDVGAVGADATVMSDNAMAGAESCKFMAQQLGGRGN------VVIVNGPPVTAVSARV 167

Query: 176 TGSMDALKAAGFPEKQIY-QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLG 234
            G    L    +P  ++            G  +   ++L  H ++    +  +ND T +G
Sbjct: 168 AGCKKVL--GNYPGIKLLSDNQDAHGSRDGGMETMANLLTAHKKID--AVFAINDPTGIG 223

Query: 235 GVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWV 294
              A +  G      +   ++G     +  K + + F  S   +P      + ++ Y+ +
Sbjct: 224 AELAVKQAGRSDVK-LIAAVDGAPDAEKALKDKKSLFAVSAAQNPYTMATMAVQIGYDIL 282

Query: 295 AKDVEPPKFTEVTDVVLITRDNFKEE 320
                P K   +     +T+ N    
Sbjct: 283 NGKR-PAKSQVLLPTPAVTKANVASY 307


>UniRef50_D2LSY2 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Bacillus cellulosilyticus DSM 2522
           RepID=D2LSY2_BACS4
          Length = 314

 Score =  218 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 50/332 (15%), Positives = 107/332 (32%), Gaps = 27/332 (8%)

Query: 1   MHKFTKALAA--IGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG--- 55
           M K    L A  + +      ++      LG  +      W     + A+   K L    
Sbjct: 1   MKKVLFLLVASILLIVGCSEDTSGDGETVLGLAMPSATHGWMGALIQNAEDQAKALVEDG 60

Query: 56  --FEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD 113
              + I     +    +N ++ L A G    V+   +    S I  +     + ++ VD 
Sbjct: 61  TIDDYIFTTADNPSAQVNNVEDLIAQGVDAIVMLPIESDALSPIALQVEEAGIPLVIVDR 120

Query: 114 QFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 173
           +  N     +     V       G   G+   +++   G       V+ I        ++
Sbjct: 121 ELTNDAATVV-----VKGDNYGAGVNAGEYFMEQLGGNGK------VVEIAGPSNSVTQQ 169

Query: 174 RTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVL 233
           R+ G  +A++ +   + +I    +       +     ++L   PE+    +   +D   L
Sbjct: 170 RSDGFREAIEGS---DIEIVASQSGEFSTETSLQVMENILTSQPEID--AVYTQDDGMAL 224

Query: 234 GGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNW 293
           G ++A              G+ G   V E+          + L SP +   +   +  + 
Sbjct: 225 GVLQAINEANRTDIQ-FITGVAGSKDVYEII-MDDGLITATFLYSP-LMVKEGVIIGADL 281

Query: 294 VAKDVEPPKFTEVTDVVLITRDNFKEELEKKG 325
              + +P     V     +T+DN  +  + + 
Sbjct: 282 ANGE-DPDSAEVVVPATPVTKDNVDDHYDPEA 312


>UniRef50_B1WQL3 Putative ribose ABC transporter n=1 Tax=Cyanothece sp. ATCC 51142
           RepID=B1WQL3_CYAA5
          Length = 380

 Score =  218 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 53/323 (16%), Positives = 116/323 (35%), Gaps = 27/323 (8%)

Query: 16  VMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-------IAVPDGEK 68
           +  Q    +  ++ +L K   +P++Q   +      ++LG + +          + D +K
Sbjct: 68  LSHQGTATQPWQIAYLFKTRSDPFWQQMEQGVQTVAQELGIKTLVKFTEEKPNTLGDVKK 127

Query: 69  TLNAIDSLA-ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVP 127
            ++ I  L   +   G VI   D      I+ KA    +KVI +D      +      + 
Sbjct: 128 QISTILELIDNNDLDGLVIAPEDSIQLVPIIEKATQQGIKVIVIDTPIDTDQ-----ILT 182

Query: 128 LVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANEL-DTARRRTTGSMDALK-AA 185
            V     + G+  G+ + +++ +      +  ++ +  +   +    R  G ++ LK A 
Sbjct: 183 FVTFDNFEGGQILGEWVIQKLTQSSRRNNKINILILEGSLHEENTIERRQGFLEGLKRAN 242

Query: 186 GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK 245
                +I  + +   +   A     + L + P +   +I+  +D   +G   A +     
Sbjct: 243 KNYSLEILDLKSADWETKKAKMITQAWLEKFPTID--VIMAADDQMAVGASEAVQEANKS 300

Query: 246 AADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTE 305
              II  G +G        K        ++   P       ++++ N + K+       +
Sbjct: 301 G--IIITGFDGTPYGLNAIK--TGQIDATINQLPRTQISLITQLMINSLEKEQTTLPLCQ 356

Query: 306 VTDVV------LITRDNFKEELE 322
           +          LIT+DN  E L 
Sbjct: 357 LIGQEQTENSLLITQDNINEALN 379


>UniRef50_A4IPB9 D-ribose-binding periplasmic protein n=2 Tax=Geobacillus
           RepID=A4IPB9_GEOTN
          Length = 318

 Score =  218 bits (555), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 64/335 (19%), Positives = 121/335 (36%), Gaps = 38/335 (11%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAE----------NLKLGFLVKQPEEPWFQTEWKFADKA 50
           + K TK  +   +   M+  A               ++  ++K    P+++     A  A
Sbjct: 2   IKKKTKLFSTAVVLTCMALLAGCGGSKGASGGGGEERVAVVLKTLSSPYWKYVEAGAKAA 61

Query: 51  GKDLGFEVIKIAVP---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMK 107
           GK+LG +V  +      +  + +N I+          V+    P     ++  A    + 
Sbjct: 62  GKELGVDVTVVGPNAESEVMQQINMIEDQLNQSPGALVVSPSQPDTVVPVLETAT---VP 118

Query: 108 VIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANE 167
           V+ +D        K  +    +     + G   G+ L   +QK          +   A  
Sbjct: 119 VLLIDT-----DAKLKNKTSFIGTENYEAGYEGGKLLSSLLQKGDKVA-----IISGALG 168

Query: 168 LDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGM 227
                 R  G+  AL+ AG     I       +D   A     ++L ++ +VK   +   
Sbjct: 169 NTATDERVKGAKAALEEAG---MVIVAEQPADSDKTKAMSVMENILQKNNDVKG--VFAA 223

Query: 228 NDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSS 287
           ND   LG +RA E +G    D+  IG +G   +  +         G++  +P   GY+  
Sbjct: 224 NDDMALGVLRAVEAKGL---DVKVIGTDGT--LEAVESILDGKLAGTIAQNPYKMGYEGV 278

Query: 288 EMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELE 322
           +     +  +    +      V +IT+DN +E+LE
Sbjct: 279 KNALAAINGEKVDKRINS--GVEVITKDNAQEKLE 311


>UniRef50_A8S343 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8S343_9CLOT
          Length = 373

 Score =  217 bits (554), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 43/315 (13%), Positives = 101/315 (32%), Gaps = 26/315 (8%)

Query: 14  AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTL 70
           A + +      + K+G++ K    P+   +    + AGK +GF  I  A       E+ +
Sbjct: 68  AQIATSVKAGGDYKIGYIAKNTTNPYMVAQSAGVEAAGKAMGFTAITQAPTTADSVEEQV 127

Query: 71  NAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVM 130
             ++++        ++   D       V KA+   + V+ +                   
Sbjct: 128 QLMENMITQDVDAIIVHCADSNGIMTGVRKAQDAGVLVLTIGTPAAEDTFLRT------G 181

Query: 131 MAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEK 190
           +   + G    + +  ++  +G       ++         A  R  G    L  + +   
Sbjct: 182 VDYYESGYTMAKAVADKLGGKGKF-----IILEGPAGASNAIERLNGINTGL--SEYEGI 234

Query: 191 QIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADII 250
           +I    T +           +++ Q+ ++    ++  ND + LG V+A         D++
Sbjct: 235 EIVASQTANFKRTEGMSVTENLIQQYTDID--AVIACNDESALGAVQALTAANMS--DVL 290

Query: 251 GIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDV- 309
             G +G    +   K      + +    P   G+ +      ++    EP          
Sbjct: 291 VCGFDGSVDATNAVK--EGTMFATYNTDPYGSGFVACAYAVKYLNDKTEPEGKFIPFPTA 348

Query: 310 ---VLITRDNFKEEL 321
               L+  D  +  +
Sbjct: 349 ANDPLVIADTVQNYI 363


>UniRef50_B0G492 Putative uncharacterized protein n=1 Tax=Dorea formicigenerans ATCC
           27755 RepID=B0G492_9FIRM
          Length = 378

 Score =  217 bits (554), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 45/304 (14%), Positives = 92/304 (30%), Gaps = 20/304 (6%)

Query: 24  ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP---DGEKTLNAIDSLAASG 80
               +GF        +         +A   LG +    A       E+ L  I++  + G
Sbjct: 79  SKYTIGFCGMTLNNEYHIIVANAVQQACNALGIKCEIQAGSQHASVEEQLTIIENYVSQG 138

Query: 81  AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK-GKPMDTVPLVMMAATKIGER 139
             G ++     +   + + +    ++ VI +D +  ++        +P         G+ 
Sbjct: 139 VDGIILVPAASEGLISALQECESANIPVINLDTKLDDSTLKTLGKDIPFYGTDNYVGGQL 198

Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199
            G+E+ +             V             R  G +D           +      +
Sbjct: 199 VGEEVAQMYPDGCKTAILRGV-----QGQTNDDDRYNGFLD----KAGDVVDLVAEQHAN 249

Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259
            +    + A  +++  + +++  +I   ND   +G  +A +  G     I     +GV  
Sbjct: 250 WETDQGYTAIQNIIQANKDLQ--VIYCENDLMGIGAYQAVDEAGLT-DQIKIFSYDGV-- 304

Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
              L       F  +    P   G      +    A           T   LIT +N K+
Sbjct: 305 TEGLQYVVDGKFVSTCAQQPIKMGKLGVANMAKIFAGKDAES--YIDTGCELITSENAKQ 362

Query: 320 ELEK 323
            LE+
Sbjct: 363 TLEE 366


>UniRef50_A6C460 Ribose ABC transporter (Ribose-binding periplasmic component) n=1
           Tax=Planctomyces maris DSM 8797 RepID=A6C460_9PLAN
          Length = 321

 Score =  217 bits (553), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 60/325 (18%), Positives = 109/325 (33%), Gaps = 28/325 (8%)

Query: 8   LAAIGLAAVM---------SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE- 57
           L AIG              S S        G   +    P+F    +   K  +  G   
Sbjct: 13  LLAIGSIGCSNGSDSHSPQSDSTADSGRLFGASFQTMNNPFFVDLGEGLKKELEANGDRL 72

Query: 58  VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117
           VI  A  +  K  N +  L      G  +   + +     + +A    + +I VD     
Sbjct: 73  VILDAQFNSLKQKNDLSDLILQNVAGIFVNPVNWEGLKGSLLEANRKKVPIIIVDAPVKK 132

Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177
           A  + +  V  V     + GE   Q L K          ++ ++ +  +       R  G
Sbjct: 133 ADEELI--VCTVASDNVRAGELAAQALAK-------VNPKARLVVLHLSVNKACIDRVAG 183

Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237
               L+    PE +I  V        GA      ++ ++P++    +  +ND   LG + 
Sbjct: 184 FKTELEK--HPEMKILDVQEAQGTTEGARPVMRDLIGRYPDLD--AVFAINDPNALGVIS 239

Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
           A +    K   +  + ++G  A   +   QA   + +    P   G  ++E +   +  +
Sbjct: 240 ALDSAN-KLDQVTIVTVDGSQA--GIKAIQAGKLHSTSAQFPREIGKIAAEKMLAHLKGE 296

Query: 298 VEPPKFTEVTDVVLITRDNFKEELE 322
                      V LIT +N ++ LE
Sbjct: 297 PVEKDVK--VRVELITAENAEQYLE 319


>UniRef50_UPI0001B4C057 putative D-ribose-binding protein component of ABC transporter n=1
           Tax=Streptomyces hygroscopicus ATCC 53653
           RepID=UPI0001B4C057
          Length = 325

 Score =  216 bits (552), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 52/313 (16%), Positives = 94/313 (30%), Gaps = 20/313 (6%)

Query: 3   KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-I 61
                  A G     +++A  + + +G  V   +  +F    +      K  G +VI   
Sbjct: 18  TMVVGATACGRGGNGAKTADGKQITIGLAVANLQADFFNQIKQSVTAEAKKKGIKVIVSD 77

Query: 62  AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121
           A  D    +N I    +      +            V  A    + V+ VD       GK
Sbjct: 78  ARGDAATQVNQIQDFISRQVSAIIYIPAGATAAGVPVKAANRAKIPVVTVDRNPPGEPGK 137

Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181
                  +   +       G  + KE   +G        +            R  G   A
Sbjct: 138 -----SFIASDSVAAARTLGNYVVKESGGKGQLA-----ILQGQIGTTPQVDRQKGFGQA 187

Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241
           LK A  P  ++            A+  +  ML  HP +      G  D+  LG  +A + 
Sbjct: 188 LKNA--PGIKVVSQQPADWAQDKAYSVSQDMLQAHPGIDIL--WGQADAMALGAAQAVKA 243

Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301
            G K    + +G +G   ++ L   +      +++      G  S     + +     P 
Sbjct: 244 SGSKKKH-LIVGFDG--DIAGLKAVRRGTVDATMVQQTRKMGRMSVNTAVDIIKGKKVPA 300

Query: 302 KFTEVTDVVLITR 314
              ++    L+T 
Sbjct: 301 --QQLQPAFLLTS 311


>UniRef50_C5EPY8 Ribose ABC transporter n=2 Tax=Clostridiales RepID=C5EPY8_9FIRM
          Length = 356

 Score =  216 bits (551), Expect = 9e-55,   Method: Composition-based stats.
 Identities = 51/318 (16%), Positives = 103/318 (32%), Gaps = 24/318 (7%)

Query: 13  LAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE------VIKIAVPDG 66
           +++  ++ +      +          W     +      + L  E       I  +  D 
Sbjct: 36  VSSEAAKPSNDGGYVVALCNYSIGNSWRAQMEQEFVAEAEKLKAEGVVSEYYITNSNDDI 95

Query: 67  EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTV 126
            K ++ +  L      G VI    P   +  V +A    +KV++ D+     +      V
Sbjct: 96  NKQISDMQDLITKKVDGIVITAASPTALAPAVEEATEAGIKVVSFDNVVDTDE-----QV 150

Query: 127 PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAG 186
             V +  T+ G      L K++  +G  V  + +             R  G+ +  K   
Sbjct: 151 ATVGIDQTEFGRVCADWLVKKLDGKGKIVVLNGIA-----GTANDTMRWNGAEEVFKQ-- 203

Query: 187 FPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA 246
           +P+ +I      S D      A  SML  +PE+    +     +   G + A    G K 
Sbjct: 204 YPDIEILGSANASWDYAQGKAAMESMLSAYPEIDG--VWSQGGAMTQGAIDAFIAAGRKL 261

Query: 247 ADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEV 306
             +         A+    + +  G        P   G ++   +   +  +  P + T  
Sbjct: 262 --VPMTSEGNNGALRAWIENRDNGLSCIAPSDPTYSGAEALRTVIKSLDGEEVPKRVT-- 317

Query: 307 TDVVLITRDNFKEELEKK 324
            D+ ++T DN  +   + 
Sbjct: 318 LDIPVVTEDNVDKYYRQD 335


>UniRef50_C3KN00 Periplasmic ribose-binding protein n=1 Tax=Rhizobium sp. NGR234
           RepID=C3KN00_RHISN
          Length = 339

 Score =  216 bits (550), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 54/296 (18%), Positives = 110/296 (37%), Gaps = 14/296 (4%)

Query: 5   TKALAAIGLAAVMSQSAMAENLK-LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IA 62
              +A++ LA  ++  A A+ +K +G+ V   + P +Q   K A+K   + G +VI    
Sbjct: 12  LGLIASVALAGSLAVPAQAQEMKTIGWSVAYFDHPVYQLMMKGAEKVADEAGCKVIFADG 71

Query: 63  VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122
             D     + ID+  A G  G ++           V K     + ++  D +     G+P
Sbjct: 72  KDDPSVQASHIDNFIAQGVDGIILTPTVSDPLIPAVKKVNDAGIPLVMADRRMQT-HGQP 130

Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182
           +    LV     K G   G++  K +  +G       V+        +   R     + +
Sbjct: 131 IKWEALVSWDMVKSGTIGGEQTVKAIGGKGN-----IVVVEGTPGAGSTIDRGNAFYEVI 185

Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242
           +   +P+ +I      + +     +   ++L +    +   I  M D    GG++A +  
Sbjct: 186 EK--YPDIKILAKIPANFNRAKGQEVTENILQRFKPGEIDAIYYMADEMTFGGLQAIKAA 243

Query: 243 GFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
           G    +   I ++G     +L +A+   +       PD     +  +L + V    
Sbjct: 244 GR-LGEFKIISVDGQKEAMDLLRAREIDYEAIF--HPDDQA-VAVRILCDIVNGRT 295


>UniRef50_B0NBQ1 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC
           35704 RepID=B0NBQ1_EUBSP
          Length = 352

 Score =  215 bits (549), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 54/355 (15%), Positives = 111/355 (31%), Gaps = 34/355 (9%)

Query: 1   MHK--------FTKALAAIGLAAVMSQSAMAEN--LKLGFLVKQPEEPWF----QTEWKF 46
           M K              A  +A         E   +K+G  + + ++ +      +    
Sbjct: 1   MKKMKSRIARICLALCLAAMMAGCAGTEKKEEKTGIKIGVAIYRGDDAFISSLCASLENA 60

Query: 47  ADKAGKDLGFEVIK---IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARG 103
                + LG +V+     A        + +D     G     +   D  + + IV KA+ 
Sbjct: 61  IKDKEEKLGKKVVVNIADAKNSQSSQNDQVDDFIRKGYDAICVNMVDRTVAAVIVDKAKE 120

Query: 104 YDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQ------KRGWDVKE 157
             + +I  + + V       +    V   A + GE +GQ +    +       +  D K 
Sbjct: 121 AGIPIIFFNREPVEEDMAIWNQTYYVGTDAREAGELEGQIVADAWKSQESRIDKNGDGKL 180

Query: 158 SAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHP 217
             VM         +  RT  S+  +   G   ++     T +     A++     + Q+ 
Sbjct: 181 QYVMLEGEQVHQDSLIRTEYSVKTILKEGIVTEK-LASGTGNWMRSPAYELMQEWIGQY- 238

Query: 218 EVKHWLIVGMNDSTVLGGVRATEGQGFKAAD-IIGIGINGVDAVSELSKAQATGFYGSLL 276
             +  +++  ND   +G + A    G    +  I +GI+G +    L K       G+++
Sbjct: 239 GSQIEVVLSNNDEMAMGAIEALVENGMSGGNGPIVVGIDGTED--GLEKIIKGEMEGTVM 296

Query: 277 PSPDVHGYKSSEMLYNWVAKDVEPPKF------TEVTDVVLITRDNFKEELEKKG 325
                       +            +               +T DN +E ++ K 
Sbjct: 297 NDARGQAESILGIACACAEGKDPKQEVPELKGQYVRVPHSPVTADNVQEFIDYKN 351


>UniRef50_Q9KAG4 Sugar ABC transporter (Sugar-binding protein) n=1 Tax=Bacillus
           halodurans RepID=Q9KAG4_BACHD
          Length = 323

 Score =  215 bits (548), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 54/342 (15%), Positives = 102/342 (29%), Gaps = 39/342 (11%)

Query: 1   MHK------FTKALAAIGLAAVMSQSAMAEN-----------LKLGFLVKQPEEPWFQTE 43
           M K          L ++ LAA  S    + +             +G  +   +  +    
Sbjct: 1   MKKNKTILIAFSILMSLLLAACGSGGETSGDGNGESTGDSGQKVIGVSISNLD-EFLTYM 59

Query: 44  WKFADKAGKDL-GFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKA 101
                +   +   FE I   A  D  + +  +++  +      ++   D      IV   
Sbjct: 60  QDAMKEEAANYPDFEFIFSDAQNDSTQQMAQVENFISRNVDAIIVNPVDTTSAVDIVNMV 119

Query: 102 RGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVM 161
               + +I  +  F             V   + + G  Q +E+ K +   G        +
Sbjct: 120 NDAGIPIIIANRTFDGVD----QATAFVGSESIQSGLLQMEEVAKLLNNEGNIA-----I 170

Query: 162 AITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKH 221
                  +    RT G+   ++       ++    T   D         + L    E+  
Sbjct: 171 MDGELGHEAQIMRTEGNKQIIEEHD--GLEVVLQGTAKFDRSEGMRLMENWLNSGTEID- 227

Query: 222 WLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDV 281
             +V  ND   LG + A E  G K  D+I  GI+   A  E  K        ++      
Sbjct: 228 -AVVANNDEMALGAILALEAVG-KLDDVIVAGIDATPAALEAMK--EGKLDVTVFQDAKG 283

Query: 282 HGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEK 323
            G  S ++       +        +    L+T +N +E   K
Sbjct: 284 QGATSVKVAVQAANGEDVEDA---MIPYELVTPENVEEYEAK 322


>UniRef50_A0JVZ4 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Arthrobacter sp. FB24 RepID=A0JVZ4_ARTS2
          Length = 318

 Score =  215 bits (548), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 66/316 (20%), Positives = 120/316 (37%), Gaps = 25/316 (7%)

Query: 8   LAAIGLAAVMSQSAMAEN--LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVP 64
             +IGL    + S  A +  +K+G  V     P+FQ E K A+  GK +G EV+ ++A  
Sbjct: 21  FGSIGLTGCATASGAAGDRPMKIGVTVANSTNPFFQQESKTAESYGKSVGAEVLSQVANE 80

Query: 65  DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124
           D +   N ID    +G K  VI   D       V +A    + VI VD+Q  NA      
Sbjct: 81  DVQTQSNQIDQFITAGVKFIVIDAADTDGVGPAVKRAVSAGIPVIGVDNQSKNA------ 134

Query: 125 TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA 184
               +     + GE   + L  ++  +G       +  +    +     R TG    L  
Sbjct: 135 -TVNITTDNKQAGEISCRSLADKLGGKGK------IAILNGTPVSAVDDRVTGCKGIL-- 185

Query: 185 AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF 244
             +P+ +I       N    A   A  +L  +P++  +    +ND + +G   A E +G 
Sbjct: 186 GQYPDIKIVADQRGENSRDSALPIATDILTANPDLDGF--FAINDPSAVGVQLAAEQKGA 243

Query: 245 KAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFT 304
               ++   ++G  + ++   A       +    P     ++ ++  + V     P +  
Sbjct: 244 S---VVITSVDGASSATDAIAA-GGLITATAAQDPAALMRQAIDLGISIVNGKE-PDQKV 298

Query: 305 EVTDVVLITRDNFKEE 320
            +    L+   N  + 
Sbjct: 299 ILVPTELVDASNVAKY 314


>UniRef50_UPI000185D1D6 putative DNA-binding response regulator/sensor histidine kinase n=1
           Tax=Capnocytophaga sputigena ATCC 33612
           RepID=UPI000185D1D6
          Length = 903

 Score =  215 bits (548), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 53/320 (16%), Positives = 103/320 (32%), Gaps = 26/320 (8%)

Query: 2   HKFTKALAAIGLAAVMSQSAMAEN-LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE--- 57
            ++        L A ++          +G      E+ W QT  +   +       +   
Sbjct: 4   RRYHILFLYFALFACLACQRERNPRYVIGVSQCS-EDLWRQTMNEELKREVALYQADAEV 62

Query: 58  VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117
           +I+    D  K +  I+          V+   + +  + ++ KA    + VI VD +   
Sbjct: 63  LIRSVKDDTPKQIADIEWFIEQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRKIAT 122

Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177
                      V     +IG+  G      ++ +G   +             +   R  G
Sbjct: 123 ES-----YTAYVGANNYQIGKEAGLYAIGVLKGKGNIAE-----VRGTKGSTSDAERHKG 172

Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237
            +DALK A  PE QI      +     A      +  +HP +   L+  MND    G   
Sbjct: 173 FVDALKNA--PEVQIVAETWGNFLQADAKTQMQQIFQEHPHID--LVFAMNDPMAAGTHE 228

Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
           A      K      IG++ +  V  +   + +    S +      G K  E+    +   
Sbjct: 229 AAMQFNGKIP--FIIGVDALQQV-GIQNIENSVQDASFIYP--TGGEKVIELAMKILH-- 281

Query: 298 VEPPKFTEVTDVVLITRDNF 317
            +P +   + +  ++ + N 
Sbjct: 282 KQPFQRENILNTTVVDKSNV 301


>UniRef50_Q08VN8 RbsB protein n=2 Tax=Proteobacteria RepID=Q08VN8_STIAU
          Length = 331

 Score =  215 bits (548), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 51/303 (16%), Positives = 110/303 (36%), Gaps = 20/303 (6%)

Query: 21  AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---PDGEKTLNAIDSLA 77
           A     K+  ++K    P+F    K A +A K+LG +++          E+ +  I+ L 
Sbjct: 44  AAPNARKIALVMKTLTNPFFIEMEKGARRAQKELGIDLLVKTAAQETSIEQQIQIIEDLI 103

Query: 78  ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA--KGKPMDTVPLVMMAATK 135
                  VI   D      ++  A+   +++I +D++      KG+ M  VP + +   K
Sbjct: 104 RMKFDAIVIAPGDSLRLVPVLKAAQEAGIRIINIDNRLDAEAMKGQGMAPVPFISVDNEK 163

Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195
                   + +E+ K        A +       D +R+R  G+  A +    P  ++   
Sbjct: 164 AAYESAGFIAREIHK-----PAQAAILEGIRSADNSRQRRVGAERAFREN--PLIRLVAR 216

Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255
            + +  I    D    +   HP++   L+   ND   LG ++  +  G     +     +
Sbjct: 217 ESANWKIDEGRDVTRRLFSDHPDI--TLLFCANDMMALGAIQFLQESGRYG--VKVAAYD 272

Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315
            ++         +     ++       GY+   +    +  +  P     + +  L+T +
Sbjct: 273 ALEEAKRAIL--SGRMEVTVNQQAAEQGYQGIILASRVLNGEAVPE--VVLVETSLVTLE 328

Query: 316 NFK 318
           + K
Sbjct: 329 SLK 331


>UniRef50_A1WLB7 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Bacteria RepID=A1WLB7_VEREI
          Length = 328

 Score =  215 bits (547), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 67/305 (21%), Positives = 109/305 (35%), Gaps = 17/305 (5%)

Query: 17  MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDS 75
           ++  A A  LK+GF     + P++    + A+ A K  G E+I   A  D  K  N I  
Sbjct: 25  LTPVAHAAGLKIGFSQVTLQSPFYVQLKEGAEAAAKAGGDELIFLDANGDVNKQNNDIQD 84

Query: 76  LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135
           L        +I   +P      +A A+   + VI VD                +     K
Sbjct: 85  LLTRKVDVLIINPVNPDAVKPAIAAAQKNGVPVITVDRSINGGG-----VTAHLGRDNVK 139

Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195
           +G+  G  +  E++K+G   +   +             R  G  DALK +GF   +I   
Sbjct: 140 MGKAVGDAVLAELKKKG-TTRGKVIEIQGDAGGTVMAARRDGFHDALKGSGF---KIVAG 195

Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255
           P        A  A   +L  HP+VK  ++   ND   +G ++     G K  D+   G++
Sbjct: 196 PYAEYTRANAVTAMQDLLQAHPDVK--VVYAHNDDMAMGALKVLAEAGKK--DVFVAGVD 251

Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315
           G+             +  + L  P   G  + +      A    P      T    +T+ 
Sbjct: 252 GLSEALASMAGGD-QYVATALNDPRYLGDMTVQTARAIKAGKKVPAFVDAGT--KAVTKA 308

Query: 316 NFKEE 320
           N  E 
Sbjct: 309 NVGEF 313


>UniRef50_C3KM03 Ribose ABC transporter, ribose-binding protein n=1 Tax=Rhizobium
           sp. NGR234 RepID=C3KM03_RHISN
          Length = 312

 Score =  215 bits (547), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 44/324 (13%), Positives = 98/324 (30%), Gaps = 14/324 (4%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-I 59
           M +      A+ LAA  + +       +G  +    + +     +            + +
Sbjct: 1   MKRMIIGTTAMFLAASSAYAGD-----IGVTIAS-NDTFLAVMVQAMKDEAAKTNQPLQV 54

Query: 60  KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
           + A  D  K L+ I +  A+     ++   +      I   A    + ++ V++   +  
Sbjct: 55  EFADADVNKQLSQIQNFIAAKVDAIIVNVVESTATPTITKMAADAGIPLVYVNNTPSDLD 114

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
                    +       G  Q +E+ + +++ G       ++         A +R+    
Sbjct: 115 QLGPK-AAFIGSQEIDAGTLQAKEVCRVLKEEGKTEDAGILIIQGVLAQHAAEQRSKAVH 173

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
           D +        +I    T   D   A D   + +      K   ++  ND   LG V + 
Sbjct: 174 DVVATPECNFMKIIDEQTAQWDPVKAQDLMTNWITA--GHKPVAVLSNNDDMALGAVNSL 231

Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
           +  G++  D+I  GI+       +   +      ++       G  S +        +  
Sbjct: 232 KAAGWEMKDVIVAGIDATK--EAMHYVKTGDLDATVFQDAVGQGAGSVDAAIKLAKGEKV 289

Query: 300 PPKFTEVTDVVLITRDNFKEELEK 323
                      L+   N    L K
Sbjct: 290 ESPVW--IPFELVNAANVDTYLNK 311


>UniRef50_D1ANT2 Periplasmic binding protein/LacI transcriptional regulator n=3
           Tax=Bacteria RepID=D1ANT2_SEBTE
          Length = 330

 Score =  214 bits (546), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 57/335 (17%), Positives = 117/335 (34%), Gaps = 36/335 (10%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLK-------------------LGFLVKQPEEPWFQ 41
           M    K    + +  ++S     E  K                   +  ++K    P++ 
Sbjct: 1   MKNIMKIFLLLTMFLLVSCGGAKEEAKTEDGNEPAKTEQKAEGQAEIAIVLKTLSNPFWV 60

Query: 42  TEWKFADKAGKDLGFEVIKIAV---PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIV 98
              +  +K     G +V  IA     D ++ L  I++L + G K   I    P      +
Sbjct: 61  EMKEGIEKEAAAQGIKVDIIAASSEEDVQEQLRLIENLLSKGYKAIGIAPLSPVNTIPAI 120

Query: 99  AKARGYDMKVIAVDDQFVNA--KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVK 156
            +A    + V+ +D++      K      +  V     K+G +  + +  ++ + G    
Sbjct: 121 VEANKKGIYVVNIDEKVDMEQLKKSGGSVLAFVTTDNVKVGAKGAEYIIGKLPEGGEVA- 179

Query: 157 ESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQH 216
               +    +   +   R  G+ +A KA    + ++        D   A D A +++ ++
Sbjct: 180 ----IIEGKSGNASGEFRRQGATEAFKADS--KFKLVASQPADWDRSKALDVAANLIQKY 233

Query: 217 PEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLL 276
           P +K   I   ND+  LG V+A    G K   I+ +G +G                 ++ 
Sbjct: 234 PNLK--AIYACNDTMALGAVQAVANAG-KTGQILVVGTDGAPEART--SIDEGKLNATVA 288

Query: 277 PSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311
             P + G  S ++L   +    +     E  +V +
Sbjct: 289 QDPAMIGATSLKILIEAIKDKPQISPDIEAKEVPV 323


>UniRef50_D2R5M8 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Pirellula staleyi DSM 6068 RepID=D2R5M8_9PLAN
          Length = 333

 Score =  214 bits (545), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 43/296 (14%), Positives = 91/296 (30%), Gaps = 18/296 (6%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSL 76
           S         +G  +     P+F              G++V +     D  +  N +   
Sbjct: 43  STKGSVSKGTVGVSLLTTTNPFFNVIADNIKSELVKEGYDVEVVSGEFDVARQKNQVKDF 102

Query: 77  AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136
             +G    V+C  D +     + +A    + V   D   +       + V  +       
Sbjct: 103 IVAGHAAIVLCPCDSRGIGPAIQEATAAGIPVFTADIACL---APGAEVVSHIATDNLGG 159

Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPE----KQI 192
           G++  + + + +   G       V+ +     ++   R  G  + +             I
Sbjct: 160 GKQAAEAMIEAVGSAGGK-----VVILDFKAAESCILRVQGFKEVIDKHNSENPSSAITI 214

Query: 193 YQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGI 252
                       ++ AA   L  HP++    I  +ND + LG   A E    KA  +  +
Sbjct: 215 VSELPGDGQKDKSYKAAEDALQAHPDLAG--IFAINDPSALGARAALEKAN-KADQVKIV 271

Query: 253 GINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTD 308
           G +G      +        +   +  PD  G + +  + ++   +  P +    T 
Sbjct: 272 GFDG--QPDGMQAIDEGKIFADPIQHPDQIGKRVAASIVSYFRGEEVPKEQLIPTG 325


>UniRef50_Q1R0N3 Periplasmic binding protein/LacI transcriptional regulator n=49
           Tax=Proteobacteria RepID=Q1R0N3_CHRSD
          Length = 318

 Score =  214 bits (545), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 59/321 (18%), Positives = 114/321 (35%), Gaps = 18/321 (5%)

Query: 2   HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI 61
            +   A  A+G+  + S ++  +   +  +V     P++ TE K A++  + LG+E    
Sbjct: 6   KRLLIAALAVGVPLLASGASAQDKGLMSIIVNDTSNPYWFTEGKIAEETAEKLGYEADVS 65

Query: 62  A-VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120
           +   D       ID+   + A+  ++   +       V KA    + V  ++ +      
Sbjct: 66  SHKGDTNTESRQIDTAITNQAEAIILDPANADGSIGAVRKAVEAGIPVFIINAEINQQGL 125

Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180
                V        +      Q+  K +           V    A   + A  R+ G   
Sbjct: 126 AEAQLV----SNNAQGAALGAQQWIKSVGD-----SARYVELKGAPSDNNAATRSNGYET 176

Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240
            L  + +P  +       + D    F+   SML  +P++    ++  ND   LG + A +
Sbjct: 177 VL--SQYPGLEKVGSDVANWDRTQGFNKTQSMLQANPDIDG--VISGNDEMALGAISALK 232

Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWV-AKDVE 299
             G K  D++  G +G     E  KA       ++L    +    +  M   +V   +  
Sbjct: 233 EAG-KLDDVVVGGFDGSPDAVEAVKA--GEMDYTVLQPVAIFSEMAVRMADKYVTTGETG 289

Query: 300 PPKFTEVTDVVLITRDNFKEE 320
                ++ D  LIT DN  + 
Sbjct: 290 VDGEKQLFDCFLITSDNVDDY 310


>UniRef50_B8I0K4 Periplasmic binding protein/LacI transcriptional regulator n=11
           Tax=Clostridiales RepID=B8I0K4_CLOCE
          Length = 342

 Score =  214 bits (545), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 56/332 (16%), Positives = 103/332 (31%), Gaps = 36/332 (10%)

Query: 1   MHKFTKALAA----IGLAAVMS--------------------QSAMAENLKLGFLVKQPE 36
           M K   AL      +  A   +                     S   + + +GF     E
Sbjct: 1   MKKKLIALLMCFSLVIAAGCGASDTNSSDSESSESAQSTSANDSGSNKLITIGFSQVGAE 60

Query: 37  EPWFQTEWKFADKAG-KDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLG 94
             W          A  +  GF++I   A    E  + A+    +       I        
Sbjct: 61  SDWRVANTASMKSALSEKNGFKLIFADAQQKQENQIKAVRDFISQDVDVIAIAPVTETGW 120

Query: 95  SAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWD 154
             ++ +A+  D+ VI VD     +          V     K G    + L   M+++G  
Sbjct: 121 ETVLGEAKDADIPVIIVDRMIKVSD--DSLFSCWVGSDFQKEGVNAAEWLVNYMKEKGKT 178

Query: 155 VKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLV 214
            K++ V+            RT G  D +K   +    I    T         +   S L 
Sbjct: 179 DKQNVVVLQGTIGSSAEIGRTKGFGDTIKK--YDNFNILAQQTGEFTQAKGQEVMESFLK 236

Query: 215 QHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA-DIIGIGINGVDAVSELSKAQATGFYG 273
           Q+ ++   +++  ND+   G + A +  G     D+  +  + V A        A     
Sbjct: 237 QYNDID--VVIAQNDNMAFGAIDALKAAGKAPGKDVTIVSFDAVKA--AFKSMIAGDMNV 292

Query: 274 SLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTE 305
           S+  +P +HG + +E+    +  +        
Sbjct: 293 SVECNP-LHGPRVAELAKKLMNDEKVEKIQYV 323


>UniRef50_C0CKL2 Putative uncharacterized protein n=2 Tax=Blautia hydrogenotrophica
           DSM 10507 RepID=C0CKL2_9FIRM
          Length = 348

 Score =  214 bits (545), Expect = 5e-54,   Method: Composition-based stats.
 Identities = 57/352 (16%), Positives = 119/352 (33%), Gaps = 40/352 (11%)

Query: 1   MHKFTKALAAIGLAAVMS-----------------------------QSAMAENLKLGFL 31
           M K    + AI LA  +                                +  ++  +G  
Sbjct: 1   MKKKISLILAIVLAGSLLAGCGSSRTENEGTQEDTAKETENTDSKENTVSEGDSFLIGVA 60

Query: 32  VKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPD 90
               + P+F    +      ++L  E+ ++ A  D    +N I +  A G    ++    
Sbjct: 61  SPNNKVPYFSKLVEGMTDLQEELNVELDVQDAQDDTNTQINQIQTFIAEGCDLIIMMPVQ 120

Query: 91  PKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP--MDTVPLVMMAATKIGERQGQELYKEM 148
            +    I  +    ++ ++ VD +   +  K   +D +  V     + G +QG+ +++ +
Sbjct: 121 LESLIPIAMECNEAEIPIMTVDRKLSASDPKDVGVDLITHVGCDDVEGGRKQGELVHQLL 180

Query: 149 QKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDA 208
              G        +        +   R  G  + L     P  +I        D   A   
Sbjct: 181 GDEGSIA-----LIQGTLGASSQVLRQQGLEEYLSENA-PGIEIVAAQNSDQDQSQAITV 234

Query: 209 ANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQA 268
             + L +  + +   IV  +  + LG V A +           IG +    V +  KA+ 
Sbjct: 235 TQNFLTRFAKGEIDAIVAQDPYSALGAVDAIKSASRDELLGTVIGYDLPSEVLDSIKAKD 294

Query: 269 TGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320
              YGS L +P   G  + ++ Y  + +  E  +    T++ ++  +N +E 
Sbjct: 295 --MYGSTLQAPYDMGALTLQVAYQCLTEGSEEIEANTYTEIPVVYIENAREY 344


>UniRef50_D1AQW5 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Sebaldella termitidis ATCC 33386 RepID=D1AQW5_SEBTE
          Length = 313

 Score =  213 bits (543), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 58/329 (17%), Positives = 113/329 (34%), Gaps = 34/329 (10%)

Query: 1   MHKFTKAL-AAIGLAAVMSQSAMAEN------------LKLGFLVKQPEEPWFQTEWKFA 47
           M K    L   + + +  S+   A                +G  +   + P++ +     
Sbjct: 1   MKKILLVLVTMLFIFSCGSKDQAAGKTEDKPTETGEKTYTIGVSLLTQQHPFYLSLKDAI 60

Query: 48  DKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDM 106
           +K       ++ + IA  D  K ++ I+          +I   D K   A V KA   ++
Sbjct: 61  EKEAAAQNVKLNVSIANQDLNKQISDIEDFITKKVDAIIISPVDSKGVLAAVKKAEAANI 120

Query: 107 KVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITAN 166
            VI VD          +D    V       G+  G+E+ + +  +G       V  I   
Sbjct: 121 PVITVD-----VPAIGVDVAAHVATDNYTGGKIAGEEMARLLNGKGE------VAVIEYP 169

Query: 167 ELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVG 226
            +D+  +R  G  + +    +P+ +I  +       P A  AA +M+  +  +    I G
Sbjct: 170 TVDSVVQRIEGFKEVIAK--YPDIKIVAIQ-AGITRPEALTAAQNMIQANKNLGG--IFG 224

Query: 227 MNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKS 286
             D   L  V A +  G K   I  IG +G+    +    + + F   +   P+  G  +
Sbjct: 225 FGDDAALAAVAAVKSAG-KEDQIKVIGFDGMQEARDAVTKEKS-FAAVITQYPEDMGKIA 282

Query: 287 SEMLYNWVAKDVEPPKFTEVTDVVLITRD 315
            +     +  +           +   T++
Sbjct: 283 VDTTLKILKGEQVEKNIPVTPGIF--TKE 309


>UniRef50_B8H228 Inositol ABC transporter, periplasmic inositol-binding protein IbpA
           n=3 Tax=Caulobacteraceae RepID=B8H228_CAUCN
          Length = 326

 Score =  213 bits (543), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 56/309 (18%), Positives = 104/309 (33%), Gaps = 18/309 (5%)

Query: 13  LAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLN 71
           +       A AE   +        +P+F    +  +     LG +V +  A  +  K ++
Sbjct: 28  MTGCARGGAEAE---VVVSFNDLSQPFFVAMRRELEDEAAKLGVKVQVLDAQNNSSKQIS 84

Query: 72  AIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMM 131
            + + A  GAK  ++   D K  +          + VI+VD      K      VP V  
Sbjct: 85  DLQAAAVQGAKVVIVAPTDSKALAGAADDLVEQGVAVISVDRNIAGGK----TAVPHVGA 140

Query: 132 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ 191
                G      + K             V+        ++  R  G  D L A G P  +
Sbjct: 141 DNVAGGRAMADWVVKTYP-----AGARVVVITNDPGSSSSIERVKGVHDGLAAGG-PAFK 194

Query: 192 IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 251
           I    T ++    A     ++L    +    +I+ +ND   +G + A    G  +A +  
Sbjct: 195 IVTEQTANSKRDQALTVTQNILTSMRDTPPDVILCLNDDMAMGALEAVRAAGLDSAKVKV 254

Query: 252 IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311
           IG + +     L++ +A     ++  +P +    +     + +         +     VL
Sbjct: 255 IGFDAI--PEALARIKAGEMVATVEQNPGLQIRTALRQAVDKIKSGAALKSVS--LKPVL 310

Query: 312 ITRDNFKEE 320
           IT  N  E 
Sbjct: 311 ITSGNLTEA 319


>UniRef50_B2T1S7 Monosaccharide-transporting ATPase n=9 Tax=Bacteria
           RepID=B2T1S7_BURPP
          Length = 339

 Score =  213 bits (543), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 56/327 (17%), Positives = 105/327 (32%), Gaps = 22/327 (6%)

Query: 4   FTKALAAIGLAAVMSQSAMAE-----NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV 58
                   G+A   +  A+ +      LK+GF   +   PW   E K         G+++
Sbjct: 24  LLALAIGFGVATAHADDALPKLASKTPLKVGFAQTESNNPWRLAETKSFKDIAAKCGWQL 83

Query: 59  I-KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117
           +   A     K ++ I ++ A      V    + K  + +V +A+   + VI VD     
Sbjct: 84  VMTDANSSNSKQVSDIQNMIAQHVDLLVFPPREEKPLAPVVLQAKKAGIPVILVDRDVDQ 143

Query: 118 AKGKPM-DTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTT 176
           +  K   D +  +       G R    L K    +        +          A  R  
Sbjct: 144 SVAKAGRDYITFIGSDFIDQGHRAADWLVKATGGKAK-----IIELEGTTGASAANDRKK 198

Query: 177 GSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 236
           G  + +     P   I    +             ++L  HP+V    +   ND   LG +
Sbjct: 199 GFDEIIAKN--PGMTIIASQSGDFARDKGRQVMETLLQAHPDV--TAVYAHNDEMALGAI 254

Query: 237 RATEGQGFKAA-DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295
            A +  G +   DI  + I+G     +   A       S+  SP   G  + ++   +  
Sbjct: 255 AAIKAAGKQPGKDIQIVTIDGTKGGMDAIAA--GELGASVQSSPF-FGPLACDVAQRYAK 311

Query: 296 KDVEPPKFTEVTDVVLITRDNFKEELE 322
            +  P             + N ++ ++
Sbjct: 312 GEKIP--TWVKVSDKFYDKSNVQQNMQ 336


>UniRef50_A8I1T9 ABC transporter sugar-binding protein n=3 Tax=Proteobacteria
           RepID=A8I1T9_AZOC5
          Length = 324

 Score =  213 bits (543), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 63/323 (19%), Positives = 115/323 (35%), Gaps = 25/323 (7%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           M K  K    +  AA+++ SA A +  +    K    P+FQT    A+ A K +G +V+ 
Sbjct: 1   MSK-LKLFGVVLPAALLATSAFAADETIAVFTKNQTNPYFQTVRVGAEAAAKAMGAKVVH 59

Query: 61  ---IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117
                     + L+ I+ +        V    D K     V +     + V+ V      
Sbjct: 60  YIPTKPDSIPEQLSQIEDVIVKKPSAIVFVPVDYKAMVPGVEQINDAKIPVVNV-----T 114

Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177
            +      +  V      +G   G+ L KEM  +G       V+        T   R  G
Sbjct: 115 DRSAGGKFLAFVGADDYSLGLETGRYLLKEMGGKGN-----VVILEGVKGSLTNVDRVRG 169

Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237
             DALK   F + ++      +           +++  HP++    ++  ND+  +G + 
Sbjct: 170 FNDALKE--FKDVKLLASQPANYQRLQGLQVMENLMQSHPQIDG--VLAANDAMAIGAIE 225

Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
           A +G   KA     +GING     +  K  +     S   +  + G   + +    + K+
Sbjct: 226 ALDGANRKA---KVVGINGTKEAVDAIK--SGKLLASGDYNGFLQGCIGTMVAIRALRKE 280

Query: 298 VEPPKFTEVTDVVLITRDNFKEE 320
               +   V    ++   N+K  
Sbjct: 281 TIVNEV--VLKPTVVNASNYKPY 301


>UniRef50_P39265 D-allose-binding periplasmic protein n=33 Tax=Bacteria
           RepID=ALSB_ECOLI
          Length = 311

 Score =  213 bits (543), Expect = 8e-54,   Method: Composition-based stats.
 Identities = 58/323 (17%), Positives = 121/323 (37%), Gaps = 21/323 (6%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           M+K+ K  +   +  ++S SA A       ++K    P++    K  +   K LG  V  
Sbjct: 1   MNKYLKYFSGTLVGLMLSTSAFAAAE-YAVVLKTLSNPFWVDMKKGIEDEAKTLGVSVDI 59

Query: 61  IA---VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQF-- 115
            A     D +  L   + L+    KG              VA+A    + ++ +D++   
Sbjct: 60  FASPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEKIDM 119

Query: 116 VNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRT 175
            N K    +    V      +G +    +  ++   G +V     +        +   R 
Sbjct: 120 DNLKKAGGNVEAFVTTDNVAVGAKGASFIIDKLGAEGGEVA----IIEGKAGNASGEARR 175

Query: 176 TGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG 235
            G+ +A K A   + ++        D   A D A ++L ++P +K   I   ND+  +G 
Sbjct: 176 NGATEAFKKAS--QIKLVASQPADWDRIKALDVATNVLQRNPNIK--AIYCANDTMAMGV 231

Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295
            +A    G K   ++ +G +G+    ++   +A     ++  +P   G    +++ +   
Sbjct: 232 AQAVANAG-KTGKVLVVGTDGIPEARKM--VEAGQMTATVAQNPADIGATGLKLMVDAEK 288

Query: 296 KDVEPP----KFTEVTDVVLITR 314
                P       ++ D +L+T+
Sbjct: 289 SGKVIPLDKAPEFKLVDSILVTQ 311


>UniRef50_D1AQM7 Periplasmic binding protein/LacI transcriptional regulator n=9
           Tax=Bacteria RepID=D1AQM7_SEBTE
          Length = 326

 Score =  213 bits (542), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 54/336 (16%), Positives = 112/336 (33%), Gaps = 30/336 (8%)

Query: 1   MHKFTKALAAIGL--------------AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKF 46
           M K       + L              AA  +        K+G L+  P   +F    + 
Sbjct: 1   MKKIIFLFTILLLIMSCGNKQETKAEGAAGNTAETKEAKKKIGVLIPGPVG-YFVAVREG 59

Query: 47  ADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYD 105
            DKA  +   E+    A  D  K L+ ++ L +       I   D       V  A   +
Sbjct: 60  IDKAAAENNVEITYSDAGWDASKQLSQVEDLISKKVDLIAIAAVDSNAAKTAVRMANEAN 119

Query: 106 MKVIAVDDQFVNAK-GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAIT 164
           + ++A  +   + + G+    +  V     + G+  G+     + ++G       V+   
Sbjct: 120 IPILAFTNAIGDKENGEYEGLITYVGQNEVETGKLTGELAKSLLGEKGGK----VVLIEG 175

Query: 165 ANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLI 224
                    R  G M+AL        ++    T + +   A      ++ ++  +   +I
Sbjct: 176 RPGTSPQINRRKGVMEALDTN--KNFEVVYTQTSNWEKEQALKIVEDLIQKNQTID--VI 231

Query: 225 VGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGY 284
           +  +D++ +G   A +    K   I+ IG+ G      L+  ++    G+   S    GY
Sbjct: 232 IAQDDNSAIGAGMALKEANLK-DKILVIGLGGS--TEGLNAVKSGLIDGTTYMSAVEEGY 288

Query: 285 KSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320
            +      ++  +   P        V + + N +  
Sbjct: 289 TAITAAVKYLNGEKVEP--VTQMKQVEVNKSNVESF 322


>UniRef50_B0G317 Putative uncharacterized protein n=5 Tax=Clostridiales
           RepID=B0G317_9FIRM
          Length = 345

 Score =  213 bits (542), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 53/298 (17%), Positives = 105/298 (35%), Gaps = 18/298 (6%)

Query: 22  MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASG 80
             E+ K+GF     E P+F T      +       E+I      D +   + I  +   G
Sbjct: 57  EQESWKIGFSGIDMENPYFLTLESAIKEEVDGKNCELIVKDPKTDPDMQASQIQEMIDEG 116

Query: 81  AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140
               ++   D +  +  +   +  D+K++ VD Q              +       G   
Sbjct: 117 INAIILSPVDWEKITPSLEALKEADVKIVNVDTQVKEMD----YVDAYIGSDNYNAGVLC 172

Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSN 200
           G++L K     G       V  +     ++   R TG  + L  A     +I      S 
Sbjct: 173 GEDLIKRCPDGGK------VAILECPTQNSVNERITGFEETLAKAEN-GFEIVAREDTSG 225

Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260
           +   + +AA  +L ++ ++    I+  ND   +G   A      +   I+  G++G   +
Sbjct: 226 EFQKSLEAAQKILSENSDI--VAIMCGNDQMAVGAKTAMNVA--EQGQILIYGVDGSPDI 281

Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318
            +  K       G++  SP   G  ++  + N +       +  E  +V +I ++N  
Sbjct: 282 KKELKKTENQIAGTVAQSPISMGKDAANTVLNILNGKDYEKEIKE--NVFMINQENVD 337


>UniRef50_D1AKZ2 RbsB protein n=2 Tax=Bacteria RepID=D1AKZ2_SEBTE
          Length = 364

 Score =  213 bits (542), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 60/316 (18%), Positives = 112/316 (35%), Gaps = 29/316 (9%)

Query: 16  VMSQSAMAENLKLGFLVKQPEEPWFQTEWKFAD---KAGKDLGFEVIKI-----AVPDGE 67
           + +   +   +KLG + K  E  +++T  +  +   +  K+ G+ +           D +
Sbjct: 61  LGAMPKVEGEIKLGSVAKAFENEYWRTLKEGEELGTQKFKENGYNITLDMKSAQGEGDEQ 120

Query: 68  KTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVP 127
             L+ ++ +        ++           V KA+  ++ VI V+       G   +   
Sbjct: 121 GQLSIVEDMINKKYTALLLSPISDGNLVPGVEKAKKNNIPVINVN------DGIIKNADI 174

Query: 128 LVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGF 187
            V   A   GE   + + K++   G        + I   +   AR+RT G  + +K+   
Sbjct: 175 FVGPKAIMNGELAAEWISKKIGGEGEVA-----IVIGMPKAFAARQRTLGFENWMKSNA- 228

Query: 188 PEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA 247
              +I +      D   A D A   + ++P +K   I   ND   LG   A         
Sbjct: 229 AGVKIVEKQNADWDRAKAKDLAEIWIKKYPNLK--AIFCNNDVMALGVQEAVNASKR--- 283

Query: 248 DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVT 307
           DI+ +G++G+    E    +      ++   P   G  + EM    +     P      T
Sbjct: 284 DILVVGVDGIKEAYE--SIRKGEMDATVDSFPLYKGQIAVEMALRSLGGQQLP--RVIWT 339

Query: 308 DVVLITRDNFKEELEK 323
              LI   N  E  EK
Sbjct: 340 PQALIDSTNVNEPSEK 355


>UniRef50_C1XS39 Monosaccharide ABC transporter substrate-binding protein, CUT2
           family n=1 Tax=Meiothermus silvanus DSM 9946
           RepID=C1XS39_9DEIN
          Length = 320

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 56/318 (17%), Positives = 110/318 (34%), Gaps = 18/318 (5%)

Query: 3   KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA 62
           +   A  A+  A        A+ L +  L+K    P++         A +     +I  A
Sbjct: 2   RLLTASTAVLAALAWGTLGFAQQLTIAALMKTTANPFWGAMEAGIRDAAQKGNVNLILQA 61

Query: 63  ---VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA- 118
                D E  LNA  +L     +  V+   +       + +A   ++ ++ +D     A 
Sbjct: 62  VASETDVEPQLNACLNLLQRKPQALVVAAINSVNLLPCLKQANQQNIPIVDLDGNLDPAV 121

Query: 119 -KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177
            + + +     +     + G    + +  ++   G       ++        T   R  G
Sbjct: 122 LQREGVKIAFSISSDNRRAGASAAEYVVSKL---GQGFSGKVLVIEGLAGNVTGAARRDG 178

Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237
             + LK    P  QI        D   A +  N  L +HP++    I   ND+  LG V 
Sbjct: 179 FTERLKQIA-PNAQIVATLPGDWDRLKAANITNDTLQRHPDL--AAIYCANDTMALGAVE 235

Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
           A    G K   ++ +G +G      +   +A     S+   P + G ++ E +   +  +
Sbjct: 236 AVFAAGKK---VLVVGTDGN--SDAVKSIRAGRLNASVAQLPFLVGSRAIENVLKVIKGE 290

Query: 298 VEPPKFTEVTDVVLITRD 315
              PK   +   ++I + 
Sbjct: 291 QVDPKI--IVPTLVIDKA 306


>UniRef50_B4CUB2 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Chthoniobacter flavus Ellin428 RepID=B4CUB2_9BACT
          Length = 327

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 49/326 (15%), Positives = 99/326 (30%), Gaps = 25/326 (7%)

Query: 3   KFTKALAAIGLAAVMS-----QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE 57
           +     + I L           +  A +       +    P+F        +   + G  
Sbjct: 21  RRLLLCSLIVLVGCEKKPAPDTAGAAGSRFFAVSFQTLNNPFFVDLNDGLKQVIDEHGDR 80

Query: 58  VIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116
           ++   A     K  N +  +         +   + +   A +  AR   + VI VD    
Sbjct: 81  LVTLDAQFSSLKQKNDLSDVIEQKPAAIFLNPVNWESVRATLIAARNAKIPVIVVDAPVP 140

Query: 117 NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTT 176
           +A       +  V       G    Q L       G    ++ V  +  +       R  
Sbjct: 141 DAD----LVLAQVASDNVAAGRLAAQAL-------GDARPQAKVAILQYSVNKACVDRVA 189

Query: 177 GSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 236
           G  D L  + FP   I                   +L + P++    +  +ND   +G V
Sbjct: 190 GFTDVLAKS-FPGATIIARQDVKGTSEATRPVMRDLLGRFPDLD--AVFPINDPGAIGCV 246

Query: 237 RATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296
            A +  G     ++ + ++G    ++       G + +    P   G  ++   Y+ +A 
Sbjct: 247 SAIDAAGRS-GKVLVVTVDGSREAAQFIL--NGGIHSTSAQFPKKIGSLAAGAAYDHLAG 303

Query: 297 DVEPPKFTEVTDVVLITRDNFKEELE 322
                +      V L+T+ N  E ++
Sbjct: 304 KPVDKEIK--VPVTLVTKANAAEFVK 327


>UniRef50_P39325 ABC transporter periplasmic-binding protein ytfQ n=141 Tax=Bacteria
           RepID=YTFQ_ECOLI
          Length = 318

 Score =  212 bits (541), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 67/322 (20%), Positives = 110/322 (34%), Gaps = 15/322 (4%)

Query: 6   KALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVP 64
           + L    ++A MS  A+A  L +GF     E  W   E   A    +  G  + I     
Sbjct: 4   RLLIVSAVSAAMSSMALAAPLTVGFSQVGSESGWRAAETNVAKSEAEKRGITLKIADGQQ 63

Query: 65  DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124
             E  + A+ S  A G     I          ++ +A+  ++ V  +D            
Sbjct: 64  KQENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRSIDVKD--KSL 121

Query: 125 TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA 184
            +  V       G+  G  L KE+  +      + V          A  R  G  +A+K 
Sbjct: 122 YMTTVTADNILEGKLIGDWLVKEVNGK----PCNVVELQGTVGASVAIDRKKGFAEAIKN 177

Query: 185 AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQ-HPEVKHWLIVGMNDSTVLGGVRATEGQG 243
           A  P  +I +  +         +   S +   +      ++   ND  V+G ++A +  G
Sbjct: 178 A--PNIKIIRSQSGDFTRSKGKEVMESFIKAENNGKNICMVYAHNDDMVIGAIQAIKEAG 235

Query: 244 FKAADIIGIG-INGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302
            K    I  G I+GV  +             S+  +P      + + L  +      P K
Sbjct: 236 LKPGKDILTGSIDGVPDI--YKAMMDGEANASVELTP-NMAGPAFDALEKYKKDGTMPEK 292

Query: 303 FTEVTDVVLITRDNFKEELEKK 324
              +T   L   D  KEELEKK
Sbjct: 293 -LTLTKSTLYLPDTAKEELEKK 313


>UniRef50_C4U114 Ribose-binding protein of ribose ABC transporter n=1 Tax=Yersinia
           kristensenii ATCC 33638 RepID=C4U114_YERKR
          Length = 322

 Score =  212 bits (540), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 58/325 (17%), Positives = 107/325 (32%), Gaps = 22/325 (6%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG-FEVI 59
           M     AL+    +A  +       + +         P F    +  +   K LG  ++I
Sbjct: 8   MTTLAIALSTFAFSANAAPKGKDAPVTILVSALSYSFPHFVFLQEQLEAEAKTLGNVKII 67

Query: 60  -KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
                    K +  I++    G  G +I   D    + ++  A    + V+ +D      
Sbjct: 68  RSDGQLSAPKQIADIEAAIVQGVDGIIIAPADATALAPVLRTAIKEGISVVTIDRPVNGV 127

Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
                + +  V        +RQG+ + K           + +         TA  R+ G 
Sbjct: 128 P----EVIANVAADNLIGAQRQGEAVEKLFP-----QGATIINLQGIPGDKTANDRSKGV 178

Query: 179 MDALKAAGFPEK-QIYQVPTKSNDIPGAFDAANSMLV--QHPEVKHWLIVGMNDSTVLGG 235
            D L     PE  +     T   +         ++L    +P     +IV  ND + LG 
Sbjct: 179 HDTLDK--HPELYKFVAEQTARFNRDQGLSVTENLLTGLANP---PTVIVAGNDDSALGA 233

Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295
            +A E +G K   I   G +G      L   +     G++   P   G ++ ++L +++ 
Sbjct: 234 AQAVEARGLK-GKIAIFGYDGS--TDALKAVRDGVLTGTVDQYPGKQGREAVKILTDYIR 290

Query: 296 KDVEPPKFTEVTDVVLITRDNFKEE 320
               P     +   V IT  N  + 
Sbjct: 291 TGARPATVDVLVSPVAITSKNLNDA 315


>UniRef50_B0PA90 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis
           DSM 17241 RepID=B0PA90_9FIRM
          Length = 338

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 60/354 (16%), Positives = 117/354 (33%), Gaps = 48/354 (13%)

Query: 1   MHKFTKALAAIGLAAV-------------------------MSQSAMAENLKLGFLVKQP 35
           M +   A+ +  +AA                           +  A  + L  G +V   
Sbjct: 1   MKRILSAILSAAMAASLVACGSSQSHSSAPADTPAPSVPAESAADAPDDKLTFGLVVMST 60

Query: 36  EEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTLNAIDSLAASGAKGFVICTPDPK 92
              ++ T    A +A   +G E++        D +  ++ +++L  S     ++   D  
Sbjct: 61  NSDYWLTLKDGAQEAVDAIGGELVFTGPADNNDIQGQVSLMENLINSKVDAILLTPLDSD 120

Query: 93  LGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRG 152
             +A V KA    + VI +D      K         +       G    + L + +   G
Sbjct: 121 ALAAPVEKAMDAGIPVIVIDSAVNTDK-----YTSFIATDNVAGGRMAMERLIESIGGSG 175

Query: 153 WDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSM 212
             V  +A+       + +   R  G+ +   AA      +        D   A  A  ++
Sbjct: 176 EVVVVNALA-----GIPSNDARGQGAEEY--AATVDGITVLPQQHC-LDQAEAMTATENV 227

Query: 213 LVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFY 272
           ++ +P +K   I    +   LG  +A   +G KA +I  +  +      E+   +     
Sbjct: 228 IIGNPNLKG--IFATFNRGALGAAQAIVSKG-KAGEIKMVAFDA--DADEIKLLEDGTID 282

Query: 273 GSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKKGL 326
             ++  P   G    E     +  +  P       +VV+ T+DN  +E   K L
Sbjct: 283 ALVVQQPYEMGKIGIEYAVKALNGEEVPKTVAP--EVVIATKDNMNDEAIHKVL 334


>UniRef50_Q896U1 D-ribose-binding periplasmic protein n=1 Tax=Clostridium tetani
           RepID=Q896U1_CLOTE
          Length = 324

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 58/328 (17%), Positives = 120/328 (36%), Gaps = 23/328 (7%)

Query: 3   KFTKALAAIGLAAVMSQSAMAENLK-LGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI 61
             +  L+A  LA    +SA     K +  +VK  +  ++ +    A+KA K+ G  +I  
Sbjct: 10  TMSVMLSAGVLAGCGQKSASDSTKKNIALIVKSTDSEYWLSVKAGAEKAAKEAGANIIFK 69

Query: 62  A---VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
                 D +  +N ++        G V+   D K     V  A    + ++ VD    + 
Sbjct: 70  GPATEQDIQGEVNIVEDAINQKVDGIVLAASDTKALIQPVENAINAKIPLVTVDSGVDSD 129

Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
           K         +     K   +      + + K G     + V       + TA +R  G 
Sbjct: 130 K-----VASFIATDNEKAASQAADVCAELIGKSGKVGVVNFV-----PGVSTAVQREKGF 179

Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238
            D +  +     ++ +     +D   A      +L  +P+VK   I   N+ + LG  +A
Sbjct: 180 RDGM--SKHSGIELLKTQYSQSDKSKAMAITEDILTANPDVK--AIFAANNRSALGVAQA 235

Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
            +G+G  A  +  +  +      E+   +       ++ +P   G +  + +   +  + 
Sbjct: 236 LKGKGV-AGKVKVVAFDA--DPDEIKGIEDGSITALIVQNPYKMGEEGVKNVLALMKGET 292

Query: 299 EPPKFTEVTDVVLITRDNFKEELEKKGL 326
              +    T V ++T++N  +   +K L
Sbjct: 293 VEKRID--TGVTIVTKENINDPEVQKVL 318


>UniRef50_A9FWH4 LACI-type transcriptional regulator n=1 Tax=Sorangium cellulosum
           'So ce 56' RepID=A9FWH4_SORC5
          Length = 332

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 48/314 (15%), Positives = 98/314 (31%), Gaps = 18/314 (5%)

Query: 10  AIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDG-EK 68
           A    A   +      + +GF     E  W     K      +    +++     +    
Sbjct: 30  ASSAEAAGRKPKALTEIVVGFSQTGAESSWRIAHSKSIQAEAEKRHVQLLFADGQNVHNN 89

Query: 69  TLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPL 128
            +NA++     G    VI   +       + +A+   + V+         +      +  
Sbjct: 90  QVNAVNGFITKGVDVIVIAPQESVGWKPTLKEAKRAGIPVVLTSRGVDAEEDLYETVMV- 148

Query: 129 VMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFP 188
                   G R G+ L K+   +        +  +     D A  R TG  +A+     P
Sbjct: 149 --ADFVWEGRRAGEWLAKQTNGK-----ARIIELVGTPAADVAVMRKTGFAEAIAK--HP 199

Query: 189 EKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA- 247
           + +I    +             ++L  H   +   +   ND   LG ++A +  G K   
Sbjct: 200 DMKIIASQSGDFTRTKGKTVMETLLSAHKG-EINAVYAHNDDMALGAIQAIQAAGLKPGQ 258

Query: 248 DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVT 307
           DI+ I I+ V    E           ++  +P +HG    + +   V  +  P +   + 
Sbjct: 259 DILVISIDAVKPAFEAM--MEGKLNATVECNP-MHGPLLFDTIDKIVRGEKVPKR--TIV 313

Query: 308 DVVLITRDNFKEEL 321
              +  R+     +
Sbjct: 314 PGQIFEREQAAAAI 327


>UniRef50_B0NEL2 Putative uncharacterized protein n=1 Tax=Clostridium scindens ATCC
           35704 RepID=B0NEL2_EUBSP
          Length = 321

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 56/334 (16%), Positives = 108/334 (32%), Gaps = 32/334 (9%)

Query: 1   MHKFTKALAAIG-------LAAVM----SQSAMAENLKLGFLVKQPEEPWFQTEWKFADK 49
           M K    +  +G       L        S+S   + + +GF  K   + + +     A+ 
Sbjct: 1   MKKRFLGVLLVGAMVMSTVLTGCGNKKESKSGGEDKITIGFSSKTNSDTFVKAIADAAED 60

Query: 50  AGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKV 108
           A K+ G ++I   A  D  K +N  ++L A      ++   D +  + +V+ A   D+ +
Sbjct: 61  AAKEQGVDLIMADAEGDVNKQINDCETLIAQQVDALIVIPQDVEGSAPVVSMANEADIPI 120

Query: 109 IAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANEL 168
           I  +    +      +    V     + GE  G            +      +       
Sbjct: 121 IICNGDIADK-----NYTAFVGCTDQESGEILGTWFND-----NVEHGSQICIIEGPMGQ 170

Query: 169 DTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMN 228
                R  G  +          ++    T +     A   A   L  + + K   IV  N
Sbjct: 171 SGQVGRYAGFEEV---GMLDNFEVLSCQTANWKRDEAMALAEDWLTTYGD-KLKAIVCEN 226

Query: 229 DSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSE 288
           D   +G + A +  G    D++  G++G++    +   +      S+L      G  + E
Sbjct: 227 DDMAMGALSACKAAGRT--DVVIGGVDGLED--AIQAVKDGELGVSVLQDSAGQGEGAVE 282

Query: 289 MLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELE 322
           +    +  +              IT DN    LE
Sbjct: 283 VALQIINGEDYQKD--TRIPFHAITSDNVDAYLE 314


>UniRef50_C6V848 D-ribose-binding periplasmic protein n=11 Tax=Gammaproteobacteria
           RepID=C6V848_ECOBD
          Length = 357

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 64/329 (19%), Positives = 123/329 (37%), Gaps = 22/329 (6%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           M      + A+ L A +S SA+A++L L  + K  +  ++QT     + A K+LG +   
Sbjct: 42  MKTR-HFIYALSLLACVSSSALAKDLNLPVVSKGFQHEFWQTVKMGTEAAAKELGDKTSY 100

Query: 61  IAVPD---GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117
           +   D     + +  +++  A    G ++   D    + +V  A    +KV+  D    +
Sbjct: 101 VGPADETQIAEQIQLVENAMAQKPNGLLLAALDANALAPLVETANSRGIKVVTFDSGINS 160

Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177
                   V  V     K G +    L  ++  +G        +        +A  R+ G
Sbjct: 161 DIP-----VSFVATNNRKAGAQAADALASQVNNKGKVG-----IIAHVAGTSSAIERSEG 210

Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237
            M+ +K   +P+ ++  V     D   A D    M+  +P++    I G N+ + LG   
Sbjct: 211 FMERMKE-KYPDIKVLPVQYSDGDPQKAMDKTIDMIQANPDLAG--IYGTNEGSTLGVAN 267

Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
           A + Q  K   +  IG +  +A+    K       G ++      GY+  + L   ++  
Sbjct: 268 AIDSQNLK-GKVKVIGFDSTEAIINFLK--NGVIQGFVVQDAYQIGYQGIKTLNAALSGQ 324

Query: 298 VEPPKFTEVTDVVLITRDNFKEELEKKGL 326
               +      V  +  +N       K L
Sbjct: 325 AVEKEID--IPVKFVNAENINTPEIDKLL 351


>UniRef50_A6UHJ3 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Sinorhizobium RepID=A6UHJ3_SINMW
          Length = 322

 Score =  212 bits (540), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 49/315 (15%), Positives = 103/315 (32%), Gaps = 19/315 (6%)

Query: 15  AVMSQSAMAENLKLGFLVKQPEEPWFQTE-WKFADKAGKDLGFEVIKIAVPD-GEKTLNA 72
                 A  +  ++GF      EPW          +A K    E+I     D  EK +  
Sbjct: 24  PAGDAVAQDKKFRIGFSQATTIEPWRAQFNKDIIAEAAKHPDVELIITDGEDRTEKQVAD 83

Query: 73  IDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMA 132
           +++L        ++   +    + +V +A    + V  +D      +         V   
Sbjct: 84  VENLIRQEVDALLVSPKESAGLTGVVQQAIDAKIPVFVLDRNVETDQ-----YTQFVGGD 138

Query: 133 ATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ- 191
              IG   G+   + +  +G   + + V          A  R  G  +       P  + 
Sbjct: 139 NKLIGRAAGEYAVELLGGKGK-AQGNIVEIWGGMGTQPAHDRHDGFHEFTDKE--PGIKN 195

Query: 192 IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 251
           +    +       A++   + L  + ++   L+ G ND    G   A +  G +  +I  
Sbjct: 196 LLDKQSGDWKQDQAYNIMATALRNNEKID--LVYGHNDPMAYGAYLAAKDAGRE-KEIKF 252

Query: 252 IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311
           IGI+ +     ++         + L +    G +       ++  +      T   D + 
Sbjct: 253 IGIDALPN-EGVTWVSNGELTATFLYATP--GAEGLRQAVKFLKGEKVEKTVT--LDTLK 307

Query: 312 ITRDNFKEELEKKGL 326
           +T +N  + ++  GL
Sbjct: 308 VTEENAAQIMKDNGL 322


>UniRef50_A6VWF2 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Gammaproteobacteria RepID=A6VWF2_MARMS
          Length = 322

 Score =  211 bits (539), Expect = 2e-53,   Method: Composition-based stats.
 Identities = 57/337 (16%), Positives = 112/337 (33%), Gaps = 29/337 (8%)

Query: 1   MH---KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPW-----FQTEWKFADKAGK 52
           M    K  + +A   +      ++ A   K+G  V   +  W     +      AD   K
Sbjct: 1   MKYKNKIMRLIAVFTMLFAFVGTSYAAKYKIGISVPSADHGWTAGLLWWANKAAADLKAK 60

Query: 53  DLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVD 112
           +   E   +A   G K +  ++ L   G    VI   +P     ++ +A    +  + VD
Sbjct: 61  EKDIEFFVVASSSGSKQVGDVEDLMIKGIDALVILPHNPATLQKVIEEAYDEGIYTVVVD 120

Query: 113 DQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTAR 172
            +              +      +G    Q L KEM  +G       V+ I   ++   +
Sbjct: 121 RELA-----HPAQNVFIAGDNAGLGRVGAQWLAKEMSGKGN------VVVIEGLQIPINK 169

Query: 173 RRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTV 232
           +R     D +  AG+P  +I            A     + L +HP++    +   +D  +
Sbjct: 170 QRVDAFNDVI--AGYPNIKILDSQPGDWSTQKALSVMENFLQKHPKID--AVWCQDDDML 225

Query: 233 LGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYN 292
            G ++A E  G        +G  G   + E+ ++       ++  SP         +  +
Sbjct: 226 KGVLKAIEESGRTDIK-TVLGGAGSKDIIEMIQSGNKMVRATVTYSP-SMIASGIALAVH 283

Query: 293 WVAKDV----EPPKFTEVTDVVLITRDNFKEELEKKG 325
            V  +            +    L+T++N  +   K  
Sbjct: 284 GVKHEKLGYLYHEPSRVILGADLVTKENAADYYFKDA 320


>UniRef50_B1Y299 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Leptothrix cholodnii SP-6 RepID=B1Y299_LEPCP
          Length = 318

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 63/329 (19%), Positives = 114/329 (34%), Gaps = 22/329 (6%)

Query: 1   MHKFTKALAAI-GLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG-FEV 58
           M K+   L A   L +  S       L + F+ K  ++ ++       ++A ++ G  ++
Sbjct: 1   MKKYLTFLFACWVLLSSGSAWPADNKLNIVFIPKSSDQMFWDLMRNGVERAMQEEGQIDL 60

Query: 59  IKIA---VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQF 115
                    D +  +  +     +G    VI   D       V +A    +KV+ VD   
Sbjct: 61  TWRGPAYNDDTDSQIRILQYYTRAGVDAIVITPTDRSRLVGPVEQAVRMGIKVVVVDSAL 120

Query: 116 VNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRT 175
             +          V       G+   ++L + M +RG       V+  T     +   R 
Sbjct: 121 DGSGHLQ-----FVTTDNHASGQLAARQLAELMGQRG-----RVVLLRTVAGSASTDDRA 170

Query: 176 TGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG 235
            G +D L A   P   I            A  +A+++L +  +     I  +N+S   G 
Sbjct: 171 RGFIDYLSANA-PAISIVADVYGGGSAGKARHSASALLAKSADFD--AIFAVNESATDGM 227

Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295
           +RA    G        IG +    + E  + +     G ++  PD  GY + + +   + 
Sbjct: 228 LRALREAGLAGRK-RFIGFDSTPFLLEGLEKKE--IDGLIVQDPDRMGYLAIKAVVAALR 284

Query: 296 KDVEPPKFTEVTDVVLITRDNFKEELEKK 324
                      T   L+TR NF+    KK
Sbjct: 285 NRPIKESVI-HTGTTLVTRANFRRPEIKK 312


>UniRef50_Q1ARR7 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Actinobacteria (class) RepID=Q1ARR7_RUBXD
          Length = 343

 Score =  211 bits (538), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 59/304 (19%), Positives = 107/304 (35%), Gaps = 22/304 (7%)

Query: 28  LGFLVKQPEEPWFQTEWKFADKAGK--DLGFEVIKIA---VPDGEKTLNAIDSLAASGAK 82
           L  + K     +++T  + A  A K  +   +V         D    +N + +    G  
Sbjct: 45  LAVVPKAVGFDFWETVRQGAVCAAKRAEGEVDVQWDGVAQETDVTGQVNLLQNFITQGVD 104

Query: 83  GFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQ 142
           G V    D K+   +  +A    + V+ +D           + VP+         ER  +
Sbjct: 105 GLVYAATDAKVLHDVTQQALDQGITVVNIDSGTDPQP----ENVPVFATDNVAAAERATE 160

Query: 143 ELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDI 202
            L +++ + G  V              T   RT G  + LK    P+ ++    +  ++ 
Sbjct: 161 YLVEQLGEDGGKVAF----IPFQPGTATNDTRTEGFKNVLKEN--PQVKLVAEQSSESNY 214

Query: 203 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSE 262
             A      +L  HP++    I   N+  VLG   A    G KA +II +G +   A  E
Sbjct: 215 NRALQVTEDILTAHPDLD--AIYAANEPGVLGAAEAVRSAG-KAGEIIIVGWDT--APDE 269

Query: 263 LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELE 322
           L   +       +  +P   GY         +    +       T  +L+TR+N  +   
Sbjct: 270 LKAVREGVVSALIAQNPFRMGYDGVNAAVKMIRTGEQVEGGD--TGAILVTRENIDDPEV 327

Query: 323 KKGL 326
           ++ L
Sbjct: 328 QRVL 331


>UniRef50_B8CWP1 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Halothermothrix orenii H 168 RepID=B8CWP1_HALOH
          Length = 320

 Score =  211 bits (537), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 56/312 (17%), Positives = 111/312 (35%), Gaps = 22/312 (7%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTLNAID 74
                +E  ++    K   + ++ T    A+ A K+LG E++        D  K +N I+
Sbjct: 23  GDVQASEKYQILVSPKGLSQSYWLTVKAGAEAAAKELGAEIVWRGPAQETDVAKQVNVIN 82

Query: 75  SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134
                     V+   D       + +A    + VI +D             +  +     
Sbjct: 83  DFVNKKIDAIVVAATDANALIPPLKRAHEAGIPVITIDSGINADFP-----ISHIATNNK 137

Query: 135 KIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194
           +  ++  + L   + K+G       V         T+  R  G  + +  + +    +  
Sbjct: 138 EAAKKAAEVLANIIGKKGEVACIPFVA-----GAATSIARENGFKEGI--SNYKNIDLVA 190

Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254
           V    +D   A     ++L  HP +K   I   N++  +G  RA + +G  A D+I +G 
Sbjct: 191 VQYSQSDYATAMKVTENILTAHPNLKG--IFAANEAGAVGAARALKARGKTA-DVILVGF 247

Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314
           +   A +E+   +       ++  P + GY+  +     +  +         T VV+ T 
Sbjct: 248 DA--AQTEIDAMKEGIIDALIVQRPYMMGYEGVKNAVAALEGEEVEK--LIDTGVVVATP 303

Query: 315 DNFKEELEKKGL 326
           DN  +    K L
Sbjct: 304 DNMNDPEVYKVL 315


>UniRef50_C6LH93 Putative ribose ABC transporter n=1 Tax=Bryantella formatexigens
           DSM 14469 RepID=C6LH93_9FIRM
          Length = 362

 Score =  211 bits (537), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 53/321 (16%), Positives = 108/321 (33%), Gaps = 22/321 (6%)

Query: 15  AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK---IAVPDGEKTLN 71
           A  +   +  +  +  +VK    P+         KA +D+GFE +          E  + 
Sbjct: 48  AATTDVKVNGDYTIAMIVKNNTNPFMNGVLNGFSKAAEDIGFEAMLLSPQTADSNEDQVR 107

Query: 72  AIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMM 131
            ++ +  SG     I   D       + KA    + V+         +            
Sbjct: 108 LVEDMIQSGVDAICIHPVDSNGIVPALEKAWDAGIPVL-----VQGTQANTDKIYGWYGT 162

Query: 132 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ 191
                     + L +++  +G       V      +   A      +    +   +P+  
Sbjct: 163 KYADEATLIAEYLAEKLDYKGN-----VVYITGPQQAQNAIDEINATHAVFEK--YPDLN 215

Query: 192 IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA-DII 250
           + +    + +   +     +++ ++ E     ++G ND   +G + A E  G+K   +  
Sbjct: 216 LIEEQPGNFNRATSMSVMENLIQKYSEDDIDWVIGGNDECAMGAIAAMENAGWKLGFEDG 275

Query: 251 GIGINGVDAVSELSKA-QATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDV 309
           GIG++G+D   + S A Q      S+ P P   GY  +  L N++      P++    D 
Sbjct: 276 GIGVSGIDCNKDASYAMQEGTLTVSVNPDPVSLGYIGAAFLVNYLNDGDLFPEYVAWPDF 335

Query: 310 -----VLITRDNFKEELEKKG 325
                V+I   N    +E   
Sbjct: 336 QTADDVVIDASNIDNYIENLA 356


>UniRef50_C7M5H3 Sensor protein n=1 Tax=Capnocytophaga ochracea DSM 7271
           RepID=C7M5H3_CAPOD
          Length = 934

 Score =  211 bits (537), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 52/320 (16%), Positives = 101/320 (31%), Gaps = 26/320 (8%)

Query: 2   HKFTKALAAIGLAAVMSQSAMAEN-LKLGFLVKQPEEPWFQTEWKFADKAGK--DLGFEV 58
            K+        L A ++          +G      E+ W QT  +   +         E+
Sbjct: 13  RKYHILFLYFALFACLACQRERNPRYVIGVSQCS-EDLWRQTMNEELKREVALYQANTEL 71

Query: 59  IKIA-VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117
           +  +   D  K +  I+          V+   + +  + ++ KA    + VI VD +   
Sbjct: 72  LIRSVKDDTPKQIADIEWFIEQKVDVLVVSPNESEACTPVIEKAYQQGIPVILVDRKIAT 131

Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177
                      V     +IG+  G      ++ +G   +             +   R  G
Sbjct: 132 ES-----YTAYVGANNYQIGKEAGHYAIGILKGKGNIAE-----VRGTKGSTSDAERHKG 181

Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237
            +DAL  A  PE +I      +     A      +  QHP +   L+  MND    G   
Sbjct: 182 FVDALNNA--PEVRIVAETWGNFLKADAKVQMQQLFQQHPNID--LVFAMNDPMAAGTHE 237

Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
           A      K      IG++ +     +S  +      S +      G K  ++    +   
Sbjct: 238 AAMQFNGKIP--FIIGVDALQQ-EGISNIENNVQDASFIYP--TGGEKVIDLAMKILH-- 290

Query: 298 VEPPKFTEVTDVVLITRDNF 317
            +P +   + +  ++ + N 
Sbjct: 291 KQPFERENILNTAVVDKSNV 310


>UniRef50_Q2KAX1 Probable sugar ABC transporter, substrate-binding protein n=3
           Tax=Rhizobium etli RepID=Q2KAX1_RHIEC
          Length = 307

 Score =  210 bits (536), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 62/328 (18%), Positives = 102/328 (31%), Gaps = 26/328 (7%)

Query: 1   MH---KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGK-DLGF 56
           M    K   A A          +  A+   +G+      + +         +A K D   
Sbjct: 1   MKAISKLALACAISLATISTGSAFAADKFVVGYANMADTDVFVMARKNAFIEASKSDPAV 60

Query: 57  EVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQF 115
           EV    A  D  K L+ ID+  A      V+   D +     V KA    + VIA+  Q 
Sbjct: 61  EVNFSDANNDVSKQLDQIDNFIAQKVNAIVVVPVDYQGIVPGVEKANQAGIPVIALGIQS 120

Query: 116 VNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRT 175
              K         V       G  QG+ + + + K         +       L   + R 
Sbjct: 121 AGGKY------TFVGSKNIDAGRLQGEYMKEHLPKGAK-----ILYLEGTPGLSHTQERK 169

Query: 176 TGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG 235
            G  DAL   G  +       + + D           +   P  K   IV  ND   LG 
Sbjct: 170 KGFEDAL---GRSDVTTLASLSANYDRAEGMKVTEDWIQSFP--KFDAIVAANDQMALGA 224

Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295
           + A +G       ++  G++G        KA       ++          + E++     
Sbjct: 225 LEALQGADRLKG-VMISGVDGTADALNAIKA--GTMSQTIFQDAAGQAKAAFEVVEGLKK 281

Query: 296 KDVEPPKFTEVTDVVLITRDNFKEELEK 323
            +  P +   +     IT+DN  +  +K
Sbjct: 282 GEDAPAEK--LVPFASITKDNVGQYAKK 307


>UniRef50_C9XJ75 D-ribose ABC transporter, substrate-binding protein n=4
           Tax=Clostridium difficile RepID=C9XJ75_CLODC
          Length = 320

 Score =  210 bits (536), Expect = 4e-53,   Method: Composition-based stats.
 Identities = 52/303 (17%), Positives = 105/303 (34%), Gaps = 20/303 (6%)

Query: 19  QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLA 77
             +  ++L +G      +  +F    +   +  K+LG +VI      D  K  +AI+   
Sbjct: 35  GGSDKKDLTIGVSTITLQHQFFIDIDEGIKEKAKELGVKVIVNDPDQDVAKQTSAIEDFI 94

Query: 78  ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137
                G ++   D       V  A    M V+ VD           +    V   +   G
Sbjct: 95  QQNVDGMIVLGTDNSAIVPAVEGAFEK-MPVVTVDAVLNTE-----NITSYVGTVSYDAG 148

Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT 197
           ++ G+   K + ++     +S +  +T  +     +R  G  DALK +     +I     
Sbjct: 149 KKLGEYTKKYIDEK--LGGKSEIAIVTDLKSQIQMQRIDGFKDALKGSA--NVKILNSQP 204

Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV 257
              D   + +   +++  +P+V    I    +++VLG   A E    K  D+  +G +  
Sbjct: 205 G-YDREESLNTVENLIQSNPDVDI--IYATAENSVLGAKAALESA--KNKDVKIVGFDLT 259

Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317
           +  S             +   P   G  + E +   +  +            +L  ++N 
Sbjct: 260 EEASSGI--TDGTILAMIQQQPKEMGRLAVEAVVKAIKGEKVEKNI--PVPALLYDKENI 315

Query: 318 KEE 320
           K+ 
Sbjct: 316 KDF 318


>UniRef50_C4G5I4 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC
           49176 RepID=C4G5I4_ABIDE
          Length = 342

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 41/313 (13%), Positives = 99/313 (31%), Gaps = 26/313 (8%)

Query: 16  VMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL--GFEV-IKIAVPDGEKTLNA 72
             + S   +   + +L    + P++       +   K+   G +V +  +  +    L  
Sbjct: 44  SGASSGNYKGKSIAYLTPSLDVPFWCYMKHGIEDQAKNTMPGVKVTVYDSKDNANTQLAN 103

Query: 73  IDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMA 132
           +     +   G VI   D     A+++ A    + V+  D    + +      V  +   
Sbjct: 104 VQDAITNKVDGIVISPTDSASCIAVLSAAEEAGIPVVICDIGTDSGE-----YVSFISTD 158

Query: 133 ATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQI 192
            +   ++ G+ +  ++ K     +                 R  G  + +K     + + 
Sbjct: 159 NSGGAKKLGEYVADKLNKGDEIAQ-----IALNQARKNGVLRKEGFEEGIKE----KLKE 209

Query: 193 YQ-VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 251
                 +  +          ++  +P +K   I   ++   +G V A +           
Sbjct: 210 VDFRQMEKVNRDEGVRYTQDLITSYPNLKC--IFCHSEDPSMGAVTALKE--INNDKCKI 265

Query: 252 IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311
           +G +    V E  K  +     +    P   G  + + L   +      P+     D +L
Sbjct: 266 VGFDCSPEVVEAIK--SGDILATAAQQPVFMGRTAVDCLKTHLDGGT--PEKEISVDTLL 321

Query: 312 ITRDNFKEELEKK 324
           +T+DN  +  +K 
Sbjct: 322 VTQDNINDVYDKL 334


>UniRef50_C5ERG9 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ERG9_9FIRM
          Length = 355

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 53/314 (16%), Positives = 108/314 (34%), Gaps = 17/314 (5%)

Query: 15  AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAI 73
           A  S+    + LK+GF        W   E +   K  +  G+E+I   A  + EK +  +
Sbjct: 57  AKASEDGGEKKLKIGFSESTYSGAWRVAEVEDVTKYAEMNGYELIMTNADSNIEKQIGDV 116

Query: 74  DSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAA 133
           + L A      VI   D    +      +   + VI +D Q+++ K    D +  +    
Sbjct: 117 EDLIAQKCDLIVIVPVDANAVAPAFEACKSAGIPVIDMDTQYLDGK-WKEDFITTIRSDQ 175

Query: 134 TKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIY 193
            + G+   +     +  +      + +          A+ R+ G  + +  A     ++ 
Sbjct: 176 YQQGQGCAEWTVGHVGDK----DTTVLEITGNPGQSDAQNRSRGFNEYV--ADHSNIKVI 229

Query: 194 QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA-ADIIGI 252
                      A +   ++       K  +I   +D   LG +   +  G K   D+  +
Sbjct: 230 -QQNGEWSRATAQEVVQNVAQSGQ--KFDVIYCHSDEMALGALLGLKQAGLKPNEDVWIV 286

Query: 253 GINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLI 312
            ++G     +  KA      G+++      G    + +  + A D    ++        I
Sbjct: 287 AVDGQKEALDAIKADE---IGAIITCTPKGGDVLFDCINKYFAGDELEEEYFVHQST--I 341

Query: 313 TRDNFKEELEKKGL 326
           T +N  E  E +G 
Sbjct: 342 TTENVDELYEVEGF 355


>UniRef50_A1SYD2 Bifunctional carbohydrate binding and transport protein n=12
           Tax=Proteobacteria RepID=A1SYD2_PSYIN
          Length = 312

 Score =  210 bits (536), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 46/325 (14%), Positives = 99/325 (30%), Gaps = 23/325 (7%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQ-----PEEPWFQTEWKFADKAGKDLG 55
           M K   A+  +  +   S  + A++  +G           +  +         K     G
Sbjct: 1   MQKKL-AITGLAFSICFSTFSFAKDYVIGVTQNNVGVDSYQTTYDIALKDTMTKYPNVEG 59

Query: 56  FEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQF 115
              +  A  +  + +  +  L        ++   + +  + IV KA+   + VI  +   
Sbjct: 60  I--VLDAGGNVARQIAQVQDLIQQEVDAIILWPTNGQALTPIVRKAKQMGIPVIITNSNI 117

Query: 116 VNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRT 175
             ++                 G+   + + + +  +G       V         TA  R 
Sbjct: 118 --SEKGQEFITAFSGPNTITQGQYAAELMCEGLNGKG-----QVVQITGQPGYQTAINRQ 170

Query: 176 TGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGG 235
            G  D+L AA  P   I        +   +     + + +    K   +   +D+  +G 
Sbjct: 171 KGFEDSL-AADCPGVSIIDSQPGDWNREKSQRVMENFITRF-GTKIDGVYAADDNMGIGA 228

Query: 236 VRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA 295
           + A +    K  +I  +G    +        +   +YGS++ SP      +  +    + 
Sbjct: 229 LNAIKEADLK--NIKIVG--ATNFAVGYDAIKEGSYYGSVVQSPVSDAIAALAITMKILN 284

Query: 296 KDVEPPKFTEVTDVVLITRDNFKEE 320
            D         T    +T  N  E 
Sbjct: 285 GDKVEKDNYFDTPK--VTLANIDEF 307


>UniRef50_B2ILF2 Periplasmic binding protein/LacI transcriptional regulator n=60
           Tax=Proteobacteria RepID=B2ILF2_BEII9
          Length = 333

 Score =  210 bits (535), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 55/319 (17%), Positives = 109/319 (34%), Gaps = 24/319 (7%)

Query: 7   ALAAIGLAAVMSQSAMAENLK-LGFLVKQPEEPWFQTEWKFADKAGKDLGFEV---IKIA 62
            L    +  +   +A A++LK +G  V      +F    + A+   K++  +V      +
Sbjct: 27  LLMGSAILVLAMGAAGAKDLKSVGVSVGSLGNLYFVALSQSAEAKAKEINPDVKVITVDS 86

Query: 63  VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122
             D  K  N ID+  ASG    ++   DPK  +  + +A+   + V+A D   V A    
Sbjct: 87  NYDLNKQFNQIDNFIASGVDLILLAAADPKAIAPAIKRAQNAGIVVMATDVAAVGAD--- 143

Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182
                 V     + GE   Q +  ++   G       ++     ++ +   R +G   +L
Sbjct: 144 ----ATVQTNNVQAGEIACQYIVDKLGAAGGQ-----IIIQNGPQISSIIDRVSGCRKSL 194

Query: 183 KAAGFPEKQIY-QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241
                P+  I                     L +H ++    +  + D    G   A + 
Sbjct: 195 ANN--PKITILSDDQNGKCSRDEGMKIMQGHLTRHRKID--AVFTVCDPQATGSDLAAQQ 250

Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301
            G    +     ++G   + +  K   T    S    P     ++ ++ Y  +     P 
Sbjct: 251 FGRN--EFFIASVDGAPDIEKAFKGGNTRIQASASQDPYGMAQQAVQIGYEIMNGKK-PD 307

Query: 302 KFTEVTDVVLITRDNFKEE 320
               +    L+T+DN  + 
Sbjct: 308 NPMILMPSTLLTKDNVADY 326


>UniRef50_B9L479 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Thermomicrobium roseum DSM 5159 RepID=B9L479_THERP
          Length = 357

 Score =  210 bits (535), Expect = 6e-53,   Method: Composition-based stats.
 Identities = 48/305 (15%), Positives = 105/305 (34%), Gaps = 21/305 (6%)

Query: 19  QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA--VPDGEKTLNAIDSL 76
             A    + +  + K    P+F+   K  ++  K+LG     +A    D    +  I+ L
Sbjct: 69  TVAPGTKITIAMVPK-LVHPFFEDCRKGGEQKAKELGVTFEYVAPQQADPALQVKIIEDL 127

Query: 77  AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136
                    I   +PK    ++A+     + ++  D    N++      V  +       
Sbjct: 128 IRKKVHAISISPNEPKSVEPVIAEGMKQGILMMTFDADSPNSQ-----RVMYIGTDNKAA 182

Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196
           G+  G+ + K +  RG        +           +R  G  + +     P  Q+  V 
Sbjct: 183 GKTMGETMAKLLNGRGKVG-----IITGGLGALNLNQRIEGFKEGVG----PNIQVVDVQ 233

Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLG-GVRATEGQGFKAADIIGIGIN 255
              +D+      + +ML  HP++     V       L   +++ E Q      ++ +  +
Sbjct: 234 ATDDDLQKGLSVSEAMLRAHPDLNGIACVSATGGPTLAQVLKSPEFQDR-IGKLVIVAFD 292

Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315
            ++        Q      +++  P   G  + +  Y+ +    +PP     T V ++T++
Sbjct: 293 DLEETKRAI--QEGIIAATMVQRPVQMGVLTVQWAYDILTGKAKPPFKNIDTGVTVVTKE 350

Query: 316 NFKEE 320
           N    
Sbjct: 351 NLNSY 355


>UniRef50_A3N967 Ribose ABC transporter, periplasmic ribose-binding protein n=82
           Tax=Proteobacteria RepID=A3N967_BURP6
          Length = 320

 Score =  210 bits (534), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 59/305 (19%), Positives = 115/305 (37%), Gaps = 21/305 (6%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG--FEVIKIA---VPDGEKTLNA 72
           +++  A   K+  ++K     +F T    A +  K     F+++        D    +  
Sbjct: 28  ARAETAHKPKVALVMKSLANEFFLTMENGAKEYQKHNASQFDLVTNGIKDETDTASQIRI 87

Query: 73  IDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD-TVPLVMM 131
           ++ +  S     V+   D K    +V KA    + V+ +D++      K     VP V  
Sbjct: 88  VEQMIVSKVDAIVLAPADSKALVPVVKKAVDAGIIVVNIDNRLDPDVLKSKGLNVPFVGP 147

Query: 132 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ 191
              K     G  L K ++       ++  +         A++RT G  DA+KAAG    +
Sbjct: 148 DNRKGARMVGDYLAKRLK-----AGDAVGIVEGVPTTTNAQQRTAGFQDAMKAAG---AK 199

Query: 192 IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 251
           +  V +   +I      A +ML ++P +K   ++  ND+  +G V A    G     +  
Sbjct: 200 VVSVQSGEWEIDKGNAVAAAMLNEYPNLK--ALLCGNDNMAIGAVSAVRAAGR-QGKVYV 256

Query: 252 IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEV--TDV 309
           +G + ++A+  + K        +             +     +A+  +    T V  T V
Sbjct: 257 VGYDNINAIKPMLK--DGRVLATADQYAAKQAVFGIDTALKALAEHRKQADMTGVVATPV 314

Query: 310 VLITR 314
            L+T+
Sbjct: 315 DLVTK 319


>UniRef50_A6L0Y3 Sensor protein n=17 Tax=Bacteroides RepID=A6L0Y3_BACV8
          Length = 908

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 50/320 (15%), Positives = 109/320 (34%), Gaps = 23/320 (7%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEW-KFADKAGKDLGFEV- 58
           M K    L    +  + S S       +G      ++ W      +   +A    G EV 
Sbjct: 1   MKKHLLFLILCLMGILTSCSQKHTRYYIGVSQCS-DDEWRHKMNHEIVREALFYDGVEVE 59

Query: 59  IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
           I+ A  +    +  I+          ++   +    + +V KA G  + V+ +D + ++ 
Sbjct: 60  IRTAKDNSRNQIEDINYFIDRKVDLLIVAPNEAAAVTPVVEKAYGLGIPVVVIDRKILSD 119

Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
           +         V     +IG+  GQ +   +  +G       +          A  R  G 
Sbjct: 120 R-----YTAFVGADNCEIGKDVGQYIVNRLGGKGK-----ILEITGLEGSTPAMERHRGL 169

Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238
            DALKA   P  +I      +     A +  +S+L  +  +   L+   ND   +G   +
Sbjct: 170 ADALKAE--PGIEITASVDGAWLQSVAGEKMDSILQDNKGIN--LVFAQNDRMAVGAYLS 225

Query: 239 TEGQGFKAADIIGIGINGVDA-VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
              +  +  +++ +GI+ +      + +        + +      G K  ++  + +  +
Sbjct: 226 ARQRQLE-KEMLFVGIDALPGKGYGVEQVLEGVLDATFIYP--TGGDKVMQVAMDIL--E 280

Query: 298 VEPPKFTEVTDVVLITRDNF 317
             P +        L+ + N 
Sbjct: 281 KRPYERDTKLSTALVDKTNA 300


>UniRef50_B5GEU2 Sugar uptake ABC transporter periplasmic solute-binding protein n=9
           Tax=Actinomycetales RepID=B5GEU2_9ACTO
          Length = 367

 Score =  209 bits (533), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 49/321 (15%), Positives = 102/321 (31%), Gaps = 22/321 (6%)

Query: 10  AIGLAAVMSQSAMAENL-----KLGFLVKQ-PEEPWFQTEWKFADKAGKDLGFEVIKIAV 63
           A G       +  A+        +GF   +    P+   E        +  G +++ +  
Sbjct: 60  AAGGKGCTLDAYGAKKTDLASATVGFSQSEKEANPFRIAETASLKDEARKRGVKLLAVNA 119

Query: 64  PDG-EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122
                K ++ +  L A GA   VI   +      ++  A    + ++ +D +     G  
Sbjct: 120 QSQFSKQISDVQDLIAKGADLLVIAPLNSDGWEPVLRAASAKKIPIVTIDRKINA--GPC 177

Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182
            D V  +     + G R   ++ +    +G        + + A   +    RT G  D +
Sbjct: 178 KDYVSFIGSDFVEQGRRAADKMIEATGGKGEVA-----ILLGAAGNNVTTERTKGFKDRV 232

Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242
                P  ++    T              ++   P +K   I   ND   LG V A +  
Sbjct: 233 AEKA-PGLKVVFEQTGDFAREKGQSVTEQLIQSKPGIKG--IYAENDEMGLGAVNALKSA 289

Query: 243 GFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302
           G K   +  + ++G    + + +       G +  +P   G  + + L  +   +     
Sbjct: 290 GKKPGAVKIVTVDGTR--NAVKQIVDGWISGVIESNPR-FGPLAFQTLDTFTKGEEVQQD 346

Query: 303 FTEVTDVVLITRDNFKEELEK 323
                      + N + +L K
Sbjct: 347 IVIKDSAY--DKTNAEADLGK 365


>UniRef50_D1QRT0 Putative DNA-binding response regulator/sensor histidine kinase n=1
           Tax=Prevotella oris F0302 RepID=D1QRT0_9BACT
          Length = 522

 Score =  209 bits (532), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 42/322 (13%), Positives = 94/322 (29%), Gaps = 28/322 (8%)

Query: 1   MHKFTKALAAI--GLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAG-KDLGFE 57
           M+K +  +      L      S  ++   +G      +  W     +    A   + G  
Sbjct: 1   MNKISSFILTFMGCLMICSCNSRNSKQYVIGVSQCSEDI-WRDKLNQELQTATYMEDGVT 59

Query: 58  VIKIAVPDGEK-TLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116
           +   +  D +K  +  I+     G    +I        + +V KA    + VI  D +  
Sbjct: 60  MRFASADDNDKRQIQQIEQFIKDGVDLLIISPNQAHAITPVVDKAVEKGIPVILFDRKAD 119

Query: 117 NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTT 176
                       +     ++G + G  + +++   G       +  +       A  R  
Sbjct: 120 G------KYTAFIGADNVEVGRQMGDYVARQLDYHGN-----VIELMGLKGSSPAIERHR 168

Query: 177 GSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPE---VKHWLIVGMNDSTVL 233
           G ++ +  + +P  ++ +             A  +   +H          +   ND   +
Sbjct: 169 GFIERI--SRYPGIKLVESLQGDWTKASGRRAIQAFSQRHGTASCATIACVFAQNDRMAM 226

Query: 234 GGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNW 293
           G        G      +  G++ +       K  A     +    P   G    ++  N 
Sbjct: 227 GA----REAGLLPKSTLFCGVDALPGEQGGMKLVADSVLSASYIYPTR-GDLVMKLAMNI 281

Query: 294 VAKDVEPPKFTEVTDVVLITRD 315
           +     P +   +    L+T D
Sbjct: 282 LNHR--PYQKENLLQSALVTPD 301


>UniRef50_A6UE72 Monosaccharide-transporting ATPase n=13 Tax=Alphaproteobacteria
           RepID=A6UE72_SINMW
          Length = 310

 Score =  208 bits (531), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 57/324 (17%), Positives = 104/324 (32%), Gaps = 19/324 (5%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           M   T  +AA   + +   ++ AE  K+G  V   +  +F       +K  ++ G EV+ 
Sbjct: 1   MKLSTLLVAATTASVLALPASAAEVKKIGLAVPNLQADFFNQIKLGVEKHAREKGLEVVV 60

Query: 61  -IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
             A  D    ++ +  L       F+         +     AR   + VI VD     A 
Sbjct: 61  VDAKNDTNTQVSQVQDLMIQDIDAFIYIPAGAAAAAVPTRLAREAGIPVINVDRVPEGAP 120

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
           G        +   + +      + + ++    G        +            R TG  
Sbjct: 121 G-----DTFIAGESVESAYAVCKFIIEKAGGSGKMA-----IIHGQKGTTPEVDRFTGCK 170

Query: 180 DALKAAGFPEKQIYQVPTKS-NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238
            A+        ++      +       F  A +ML  +P++    I G  D   +G  +A
Sbjct: 171 RAIDEN--KGVELIDQQWSNMWSADEGFSIAQNMLQANPDITI--IFGQADGLAMGAAKA 226

Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
            +        +I  G +G  +  E        F  +   S    G  + E      A + 
Sbjct: 227 VDVANLS-DKVIIGGYDGDVSALEYLARCKGPFIATATQSTQKMGVLAVESALAVAAGEK 285

Query: 299 EPPKFTEVTDVVLITRDNFKEELE 322
              + T   + VL T DN  E ++
Sbjct: 286 VEERQTP--NAVLTTCDNAPEFVK 307


>UniRef50_B0URZ9 Monosaccharide-transporting ATPase n=2 Tax=Gammaproteobacteria
           RepID=B0URZ9_HAES2
          Length = 311

 Score =  208 bits (530), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 54/318 (16%), Positives = 110/318 (34%), Gaps = 22/318 (6%)

Query: 1   MHKF--TKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV 58
           M +F   K+  AI           AE      ++K    P++    +  +   K LG +V
Sbjct: 1   MKRFKTLKSCLAILGLVCSVSVYSAE---YAVILKTLSNPFWVAMKEGIENEAKALGVDV 57

Query: 59  IKIA---VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQF 115
              A     D +  L   + L     KG       P       AKA    + ++ +D++ 
Sbjct: 58  DIFASPSEGDYQSQLQLFEDLINKNYKGIAFAPLSPANLVMPAAKAYRKGIYLVNLDEKI 117

Query: 116 V--NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 173
              N +    +    +      +G +  Q +  ++   G +V     +        +   
Sbjct: 118 DIKNLQKAKGNVEAFITTDNVAVGGKAAQFIVDKLGSEGGEVA----IIEGKAGNASGEA 173

Query: 174 RTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVL 233
           R  G+ +    +     ++        D   A D A ++L ++P +K + +   ND+  +
Sbjct: 174 RRRGAREVFVKSSS--IKLVASQPADWDRIKALDVATNVLSRNPNLKAFYV--ANDTMAM 229

Query: 234 GGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNW 293
           G  +A    G K   I+ +G +GV    ++   +      ++   P + G K  ++L + 
Sbjct: 230 GVAQAVINAG-KQGKILVVGTDGVPEARKMVSER--KLTATIAQDPAMIGAKGLKLLVDA 286

Query: 294 VA-KDVEPPKFTEVTDVV 310
                  P       + V
Sbjct: 287 ARAGKQIPVDVEPKIETV 304


>UniRef50_D2QME7 Two component transcriptional regulator, AraC family n=1
           Tax=Spirosoma linguale DSM 74 RepID=D2QME7_9SPHI
          Length = 940

 Score =  208 bits (530), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 43/313 (13%), Positives = 103/313 (32%), Gaps = 21/313 (6%)

Query: 13  LAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGK-DLGFEVIK-IAVPDGEKTL 70
           +A   S +   +  ++GF      + W +T      +       + ++   A     + +
Sbjct: 38  MAGCQS-ATKTKTYRIGFSQCTGGDEWRKTMLHDMKRELTFHPNYTLLYEDAENSTTRQI 96

Query: 71  NAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVM 130
           + I +L   G    ++   +    + ++       + VI +D +              + 
Sbjct: 97  SQIQALIDQGIDLLIVSPNEVAPFAKVIEDVFKRGIPVILLDRKIETES-----YNAYIG 151

Query: 131 MAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEK 190
               +IG   G  +   ++ +G       V          A+ R  G ++ L+   +P  
Sbjct: 152 GDNVEIGRLAGVFIGNHLKGKG-----RIVEIWGLPSSSPAQERHRGLLEELRK--YPGI 204

Query: 191 QIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADII 250
           Q+ +      +         + L    +V   L+   ND   LG     + +G +   + 
Sbjct: 205 QVVKELNGQWERDTVGRVVAAELNTLKDVD--LVFAHNDVMALGAYAVCKQKGIE-KKLD 261

Query: 251 GIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVV 310
            +GI+ +   +   +A   G   +    P   G ++ E     +A      +  +V + +
Sbjct: 262 FVGIDALPGPNAGMQAITDGILKASFLYPTG-GEEAIETATRILAGKSVKRE--QVLNSI 318

Query: 311 LITRDNFKEELEK 323
            I   N +    +
Sbjct: 319 QIDGSNVRALKAQ 331


>UniRef50_UPI0001B51147 putative ABC transporter substrate-binding protein n=1
           Tax=Streptomyces hygroscopicus ATCC 53653
           RepID=UPI0001B51147
          Length = 354

 Score =  207 bits (528), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 53/315 (16%), Positives = 104/315 (33%), Gaps = 22/315 (6%)

Query: 15  AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE--VIKIAVPDGEKTLNA 72
           A  +     + + +GF   Q +  W     + A +  K+      V      D  + +  
Sbjct: 49  AGAADKKRGKKVTIGFAGPQADHGWLNAINEQAKRRAKEYQDVSLVSTEGSNDTAQQIGQ 108

Query: 73  IDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMA 132
           I++L        VI   D K  + +  KA    + V+ +D  F + +         +   
Sbjct: 109 IETLINKKVDVLVILPADGKALTQVGLKAMESGIPVVNLDRVFASPQA----YRCWIGGD 164

Query: 133 ATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQI 192
              +G   G+ + ++++ +        V     + L+  R+RT G  DALK   +P  + 
Sbjct: 165 NYGMGLNAGRYIGEQLKGKKN---AKVVELAGLDNLELTRQRTAGFDDALK--NYPNIKK 219

Query: 193 YQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGI 252
                    +         +L  H       +   +D   +G  RA +  G    D + +
Sbjct: 220 VGRQAAEFTVESGQSKMAQLLQAHSGFD--ALWNHDDDQGVGAERAIQQAGR--DDFLMV 275

Query: 253 GINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL- 311
           G  G     +  KA  T    ++L  P      + ++       +             L 
Sbjct: 276 GGAGAKRAMDAIKADNTVLKATVLYPP-TMAASAIDLARALGQGNGVGGLAELEIPASLT 334

Query: 312 -----ITRDNFKEEL 321
                +T++N  E L
Sbjct: 335 LYSAVVTKENVDEYL 349


>UniRef50_D2PNL9 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Actinomycetales RepID=D2PNL9_9ACTO
          Length = 335

 Score =  207 bits (528), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 51/310 (16%), Positives = 103/310 (33%), Gaps = 18/310 (5%)

Query: 21  AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEVIK-IAVPDGEKTLNAIDSLAA 78
                  +G       EP+ Q        A  ++  FEV    A  D  K +  +++   
Sbjct: 42  GADGKYVIGMSQANVAEPYRQRMDDDIKAAAAEVPQFEVKFADAAQDNAKQVADVENYIT 101

Query: 79  SGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGE 138
                 +I   + K  +A+V KA    + V+ +D +              +     +IG 
Sbjct: 102 QQIDLLIISPNEAKPLTAVVKKAYDQGIPVLVLDRKVEGD-----AYTGFIGGDNVQIGT 156

Query: 139 RQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTK 198
             G+ + +++   G     + V             R  G    +KA   P+ ++    + 
Sbjct: 157 EAGKYVAEKVLPNGG----NVVEIKGLAGATPQAERNQGFATGIKAN--PKVKVVATASG 210

Query: 199 SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVD 258
                      +++L  +P++   ++   ND    G   A +  G +  ++  IGI+ + 
Sbjct: 211 DWLREKGQAQMDALLKANPKID--VVYAHNDPMAEGAYLAAKAVGRE-KEMKFIGIDALP 267

Query: 259 AVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318
             S   KA   G   +    P   G ++       +       K T+     LI + N  
Sbjct: 268 IPSGGIKAVEQGRLTATFTYPTN-GKEAIAAAKKLLVDCGTIEK-TQTLPTRLIDKTNAA 325

Query: 319 EELEKKGLGG 328
           +   ++   G
Sbjct: 326 QIYAQENPTG 335


>UniRef50_Q9K631 Rhizopine ABC transporter (Rhizopine-binding protein) n=1
           Tax=Bacillus halodurans RepID=Q9K631_BACHD
          Length = 327

 Score =  207 bits (528), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 46/334 (13%), Positives = 93/334 (27%), Gaps = 34/334 (10%)

Query: 4   FTKALAAIGLAAVMSQ------------SAMAENLKLGFLVKQPEEPWFQTEWKFADK-A 50
                 +  L    S             +     + +GF      + +            
Sbjct: 12  LIIYCLSFLLVGCASDSDEQMGTESVNKAGDDGKMVIGFAHPDFNDMFLGFLLAGVQAYE 71

Query: 51  GKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVI 109
            +    EV+   A  D +  +  ++ L A G    +    D      IV +A+   + V+
Sbjct: 72  AEQTNVEVVYVDAENDSDGQIAQVEDLIAQGVDAIMAIPVDLIATEFIVDRAQQAGVPVV 131

Query: 110 AVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELD 169
            ++   V  +         V   + + G  Q +E+   ++ +G        +        
Sbjct: 132 LINRDSVERE------DAYVGSDSLQAGTIQMEEVAAVLKGKGKIA-----IMNGQMGHT 180

Query: 170 TARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMND 229
               RT G+   +    +P  ++    T         +   S +          +V  ND
Sbjct: 181 AQINRTLGNKQVVDQ--YPGMEVVIEGTGGWSREKGKELMESWIESGQTFD--AVVANND 236

Query: 230 STVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEM 289
              +G + A E  G    +++  GI+G     +           S+       G    E 
Sbjct: 237 EMAIGAIMAAEEAGI-VDELVFAGIDGTPDALDYMS--KGKLTISVFQDAKGQGQTGLEQ 293

Query: 290 LYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEK 323
                  +              IT+ N  E  +K
Sbjct: 294 AIKLAKGESAEK--MTNIPYETITKRNVDEYKKK 325


>UniRef50_C9LWW5 Sugar ABC transporter, periplasmic sugar-binding protein n=2
           Tax=Selenomonas RepID=C9LWW5_9FIRM
          Length = 347

 Score =  207 bits (528), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 45/297 (15%), Positives = 99/297 (33%), Gaps = 20/297 (6%)

Query: 27  KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFV 85
           K+ +     ++ +         +  K  G +V    A  D    ++ ++   ++ A   V
Sbjct: 70  KVIYANHNDDDAFAMQLKNTFAEKAKSAGLDVEFLDAKGDSNLQIDQLNEAISNKAAAIV 129

Query: 86  ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145
           +   D       V KAR   + V+ ++    + K               + G  QG+ + 
Sbjct: 130 LLAMDGTSIVPTVEKAREAGIPVVIMNRDVNDPKVIGSL------SDDREAGRMQGEFMA 183

Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205
             +           V  +  + L  A +R  G  +A      P+ ++      S      
Sbjct: 184 SHLP-----PNAKVVYLMGESSLSVAVKRWEGFKEACLDKR-PDVKLLASVDGSWSKAEG 237

Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSK 265
             A    L   PE+    +V  ND   LG ++A +         +  G++   A   L+ 
Sbjct: 238 MKAMTLWLSFFPEING--VVAANDEMALGAIQALKAANRLNG-CLVTGVDATPA--GLAA 292

Query: 266 AQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELE 322
            +A     ++    +     +  ++  +++     P  +       ITR+N  + ++
Sbjct: 293 VEAGELSQTVKQDAEGQAAGAVTLVQGFLSGKA--PTESLDIPFTSITRENVAQFVK 347


>UniRef50_B7CDT0 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM
           3989 RepID=B7CDT0_9FIRM
          Length = 326

 Score =  207 bits (528), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 43/300 (14%), Positives = 110/300 (36%), Gaps = 20/300 (6%)

Query: 22  MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLAASG 80
             E  K+G         ++    +   +  K+ G ++I   +    +K    I  L    
Sbjct: 40  STEPRKIGATYMTYNNTFYSVINEEISRILKEHGDQLIALDSAMSLKKQKEQIHYLIEQQ 99

Query: 81  AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140
               VI   D +     + +A    + VI VD +  + K    +    ++      G + 
Sbjct: 100 VDAIVIAPVDYEGLEDSLKEAYRNRIPVIVVDTEVKHNK----NITYSIVSDNYDAGVQC 155

Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSN 200
            +++ +++         + ++ +  +   +   R  G  D +++      ++ +      
Sbjct: 156 AKDMMRKL-------DHANIVLLQHSTTRSGYLRIKGFEDTIQSNE--NYKVVKRMECDG 206

Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260
            +  A     S + +   ++  +++ +ND + +G + A              GI+G    
Sbjct: 207 QLEVAMPKMESFIEE--GIEFDVVMCLNDPSAMGAMAALSSNNILKDK-YVYGIDGTPEA 263

Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320
            E+          ++  SP   G K+ E++Y   +++       E++ V +IT++N ++ 
Sbjct: 264 KEM--VVEGKMAATVAQSPKTFGKKAGEVIYKLFSQETI-KNKNEMSPVQIITKENVQDY 320


>UniRef50_A8RSF4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8RSF4_9CLOT
          Length = 315

 Score =  207 bits (528), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 52/321 (16%), Positives = 108/321 (33%), Gaps = 24/321 (7%)

Query: 4   FTKALAAIGLAAVMSQSAMAENL---KLGFLVKQPEEPWFQTEWKFADKAGKDLG-FEVI 59
              A A + L       A          G        P+F    +  ++  +  G   + 
Sbjct: 9   ILTAGAMLLLGGCGHGDASGRQHEARLFGATYMTRNNPYFDVLNEGIEEVVEANGDILLT 68

Query: 60  KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
           +  + D EK    I  +   G +   +   D +     +   R   + +I VD    +  
Sbjct: 69  RDPLQDQEKQNEQIQEMIDEGIQMLFLNPVDWEKVQPALDACREAGVGIINVDTVVKDRD 128

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
                 + ++     + G+    ++ K          E+ ++ +      +   R  G +
Sbjct: 129 S----VISIIETDNYQAGQLCALDMMKR-------KDEAKIVILDNPIQTSITNREQGFL 177

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
           D +        Q+      + +I  +      +L +  ++   +I+G ND T LG + A 
Sbjct: 178 DTIADNH--NYQVVYREAAAGEIEVSSHVMADLLRR--DISFDVILGGNDPTALGALAAL 233

Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
           +    +   ++  GI+G      +         G+   SP   G K++E  Y ++  +  
Sbjct: 234 QQARREEG-VLIYGIDGSPDFKAILDV--GYVTGTSAQSPRSIGRKAAETAYRYLDGE-- 288

Query: 300 PPKFTEVTDVVLITRDNFKEE 320
           P +        +ITRDN  E 
Sbjct: 289 PVEKYISMPSTMITRDNLHEF 309


>UniRef50_A6WVL9 Monosaccharide-transporting ATPase n=17 Tax=Proteobacteria
           RepID=A6WVL9_OCHA4
          Length = 300

 Score =  207 bits (527), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 63/315 (20%), Positives = 114/315 (36%), Gaps = 23/315 (7%)

Query: 2   HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IK 60
              ++ L +    A+M+ +A AE   +G  +   + P++        K  +     + + 
Sbjct: 4   KSLSRILFSGVALAMMAGAASAEG--IGASLLTQQHPFYIALADAMKKEAQAENVPLEVS 61

Query: 61  IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120
           IA  D  K L  ++     G    +I   D K   + + KA    +KVI VD        
Sbjct: 62  IANQDLSKQLADVEDFITKGVDVIIISPVDSKGVRSAINKAEKAGIKVITVD-----VPA 116

Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180
             +D    V       GE+  + + K + ++G       V  I    + +   R  G   
Sbjct: 117 NNVDVTSFVGTDNFAGGEKAAELMAKTIGEKGN------VAVIDYPTVQSVVDRIEGFKK 170

Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240
            +    +P+ +I  +       P A  AA ++L  +P++    I G  D   L    A +
Sbjct: 171 GIAK--YPDIKIVAIQPG-ITRPEALSAAQNILQANPDIVG--IFGFGDDAALAAASAVK 225

Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300
               +   +  IG +G++      K       G +   PD  G  + E     +  +  P
Sbjct: 226 SAKLE-NQVKVIGFDGMEEARNAVK-NDPVMVGVIAQYPDQMGKVAVETAAKVIKGEEVP 283

Query: 301 PKFTEVTDVVLITRD 315
            K   V  V  +T+D
Sbjct: 284 AKQPIVPGV--VTKD 296


>UniRef50_C0EY05 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM
           3353 RepID=C0EY05_9FIRM
          Length = 329

 Score =  207 bits (527), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 112/301 (37%), Gaps = 20/301 (6%)

Query: 21  AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAAS 79
           +      +G L      P+F+   +      +  G  +  + +  D +     ++     
Sbjct: 42  SEKSKRTIGALYMTMNNPYFEVINEEIKAVVESKGDVLETRDSGMDAKVQAKQVEKFIEE 101

Query: 80  GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGER 139
                +I   D K   + + KA+   + VIAVD    N           V+    + GE+
Sbjct: 102 KVDCILINAVDWKKIGSSLEKAKKAGIPVIAVDALIYN----RSFVDGTVVSNNYQAGEQ 157

Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199
             ++L K  +K+G       ++ +  +E  +A  R  G  + L+ AG+   +        
Sbjct: 158 CAKDLMKR-RKKGK------ILFLVQSENKSAIDRIKGFKETLEKAGWK-YENVGELECQ 209

Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259
             +  +      +L +  ++   +++ +ND + +G + A + +    +D++  G +G   
Sbjct: 210 GQLELSQPLVEKVLNKTKDID--VVMALNDPSAMGAMAALDAEHM-LSDVLVYGADGSPE 266

Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
              +          +   SP   G K+ EMLY  +           +  V LIT+DN  +
Sbjct: 267 AKTMIY--ENKMAATSAQSPRTTGKKTVEMLYKILDGKKTEK--QCIVPVSLITKDNIND 322

Query: 320 E 320
            
Sbjct: 323 Y 323


>UniRef50_C2KYA7 Possible periplasmic binding protein/LacI transcriptional regulator
           n=1 Tax=Oribacterium sinus F0268 RepID=C2KYA7_9FIRM
          Length = 281

 Score =  207 bits (527), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 47/300 (15%), Positives = 97/300 (32%), Gaps = 23/300 (7%)

Query: 28  LGFLVKQPEEPWFQTEWKFADKAGKDLGFE----VIKIAVPDGEKTLNAIDSLAASGAKG 83
           +   +      + +T      K  ++LG+      I     D    ++ I+     G  G
Sbjct: 1   MALFMSHMTNEFVKTLSSSVQKEAEELGYTGDSFKIYDGKNDVATQVSQIEQAVTLGVDG 60

Query: 84  FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143
            +I           V  A    +KV+ ++ +  +           V       G    ++
Sbjct: 61  IIIEPVSTDGIVKAVKDAEKVGVKVVILNQRISDQNAA----DTFVGADNESTGAALMKK 116

Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203
           + +++  +G       V  +     D    R+ G    L  A +P+ ++    +   D  
Sbjct: 117 VMEDLDGKGN-----IVELLGPMGSDGQVGRSKGFDSVL--AEYPDVKVIASDSADWDTA 169

Query: 204 GAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSEL 263
            A     + L          +V  ND   +G  +A +  G     I   G++        
Sbjct: 170 KALTLTENWLTS---SDIQAVVAQNDGMAVGAAQAIKEAGLT-DKIKVYGVDATSDGLNA 225

Query: 264 SKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEK 323
                 G  G++    +  G  S+++  N +     P +       V+ T++N  E L+K
Sbjct: 226 I--VNGGMTGTVSQGTENQGKISADLCSNLIYGQSVPKEVIAT--NVVYTKENVNEILKK 281


>UniRef50_D1AIH6 Galactose-binding protein n=3 Tax=Bacteria RepID=D1AIH6_SEBTE
          Length = 353

 Score =  207 bits (527), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 57/319 (17%), Positives = 112/319 (35%), Gaps = 25/319 (7%)

Query: 23  AENLKLGFLVKQPEEPWFQTEWKFA----DKAGKDLGFEVI---KIAVPDGEKTLNAIDS 75
            + +K+G  + + ++ +  +         D+  K+ G ++               + +D+
Sbjct: 39  KKEIKIGVALYKFDDTFISSVKDAINEISDEKSKETGEKITINAVDGQGQQATQNDQVDT 98

Query: 76  LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135
               G     +   D    S I+ KA+   + V+  + + V       D +  V   A +
Sbjct: 99  FITQGYDVIAVNMVDRTAASVIIQKAQAAGIPVVFFNREPVAEDMAKWDQLYYVGAKAEE 158

Query: 136 IGERQGQELYKEMQ-----KRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEK 190
            G  QG+      +      +  D K   V+         A  RT  S+ AL+AAGF + 
Sbjct: 159 SGTIQGEVAADYFKANPDADKNKDGKIQYVILEGEPGHQDALLRTEYSIKALEAAGF-QV 217

Query: 191 QIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF--KAAD 248
                 T         +   + +    + K  L++  ND   LG + A +  G+      
Sbjct: 218 DKLASDTALWQRANGQEKMAAWISAFGD-KIELVLANNDDMALGAIEALKAAGYLSDGKF 276

Query: 249 IIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTD 308
           I  IG++      +    +A   YG++L      G    ++ Y    K+    K   +TD
Sbjct: 277 IPVIGVDATAPAKD--SLKAGLLYGTVLNDARGQGKGIFDIAYALAKKENPAEKVQGITD 334

Query: 309 VVL-------ITRDNFKEE 320
                     +T++N  + 
Sbjct: 335 GKYLWIPYQKVTKENVDKF 353


>UniRef50_A9HPK6 D-ribose-binding periplasmic protein n=2 Tax=Gluconacetobacter
           diazotrophicus PAl 5 RepID=A9HPK6_GLUDA
          Length = 336

 Score =  207 bits (527), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 61/330 (18%), Positives = 107/330 (32%), Gaps = 21/330 (6%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKA-GKDLGFEVI 59
           M +   A A +  AAV    A A +  +  +VK     ++Q   K A  A  K   + + 
Sbjct: 23  MRRLLCA-ATMLCAAVAVGQAHAADRGIAVIVKTANSNYWQNVRKGAADAVAKVENYTMT 81

Query: 60  KIAVPD---GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116
                        +N +           V+   DP      + KA    + V+ +D    
Sbjct: 82  FQGPTSESAVADQVNMVADAVTQKVAAIVLAPSDPDALVPSIRKAWEAHIPVVLIDSMIS 141

Query: 117 NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTT 176
           ++  K       +       GE  G+E+   + + G     S V       + +   R  
Sbjct: 142 DSGAKY--YQSFLATDNEAAGEALGKEMVDHVGQTGKVAIMSYV-----PGVGSEIGRVG 194

Query: 177 GSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 236
           G    +        QI       + +  A +    +L  +P++K   I   N+ T +G  
Sbjct: 195 GFRKYIAEHSH--IQIVGPFYSQSQMALAMNQTTDVLASNPDLKG--IFAANEMTAVGVG 250

Query: 237 RATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296
           RA +  G K+  +  I  +G +      +  +  F    +      G K  E     +  
Sbjct: 251 RAIQQAG-KSGKLYAIAFDGNEDEQGFVR--SGTFQLLAVQGSYAMGAKGVETAIGVLTG 307

Query: 297 DVEPPKFTEVTDVVLITRDNFKEELEKKGL 326
               P     T VV +T  N      K+ L
Sbjct: 308 --AKPTKYVNTGVVFVTSANLDSPEAKQVL 335


>UniRef50_C0C2H6 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM
           15053 RepID=C0C2H6_9CLOT
          Length = 342

 Score =  206 bits (526), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 60/340 (17%), Positives = 105/340 (30%), Gaps = 30/340 (8%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAEN--------------LKLGFLVKQPEEPWFQTEWKF 46
           M     A+ A       S     E               LK+GF V   ++  FQTE + 
Sbjct: 12  MTVLMIAMLAFAFTGCTSGPQKEEKTESKSNNDKSSLEGLKIGFCVTNRDQ--FQTEQEG 69

Query: 47  -ADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGY 104
            A +     G E+ +  A  D    ++ + S   +G    +I   D +    I+  A   
Sbjct: 70  IAKELCDSKGIELSVADAKEDISTQISQVSSFVNAGCDLLMINCVDAESIQEIINAAGD- 128

Query: 105 DMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAIT 164
            +  +  +    +      +    V M+    G   G+ + + ++          V+ + 
Sbjct: 129 -VPCVFFNR-MPSDHSVFDENHYYVGMSDYDCGYDMGKFMAEWLKDNNKTDTADGVLFLG 186

Query: 165 ANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLI 224
                    RT G    L  +G+         T   D   A D     +      K   I
Sbjct: 187 PLGATNTVSRTDGIKKGLADSGYK-VNWVFEDTAEWDRSKAMDKFTQFMGSGK--KFDFI 243

Query: 225 VGMNDSTVLGGVRATEGQGFKAA-DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHG 283
              ND   LG + A    G+ A  D    GI+  +  + L          +   SP    
Sbjct: 244 AANNDDMALGCIEALTAAGYSAPFDFPIAGIDATE--NGLLAVGDGTLTATFDQSPSKMT 301

Query: 284 YKSSEMLYNWVAKDVEPPKFTEVT---DVVLITRDNFKEE 320
               E+ +  +     P +  + T      ++T DN  + 
Sbjct: 302 NYCFEIAFAILQDTDMPEEVKDFTWIYKAEMVTADNVDDF 341


>UniRef50_A4TI53 Sugar ABC transporter periplasmic binding protein n=23 Tax=Yersinia
           RepID=A4TI53_YERPP
          Length = 319

 Score =  206 bits (525), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 56/332 (16%), Positives = 108/332 (32%), Gaps = 20/332 (6%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           M K    L   G+   MS SA AE LK+GF  +     +F    ++     K+ G+ +I 
Sbjct: 1   MKKRLIGLLLAGVTISMSVSA-AEPLKIGFANRTLNGAFFNGLTEYMKIHAKEKGYTLIT 59

Query: 61  -IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
             A  D  K +  ++ + + G    ++   DP+ G  I   A+   +  + +D       
Sbjct: 60  TDARGDLNKQIADVEDMLSQGINYLILNPQDPQAGLRITEIAKRAGVPTVILDSDI---- 115

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS- 178
                 +  V     K     G+    +   +      + +           + R     
Sbjct: 116 ALEAPVITRVQANNAKNNNLIGEYAVGQFGDK----PMNCIFLSGNQGNLVGQARRDNFL 171

Query: 179 ----MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLG 234
                  L+               + D  G   A   ++V   + K   +    D   LG
Sbjct: 172 LGVAEAQLRKYNRTNVNFLSQGWGNWDQQGGLKAMEDIIVAQGD-KINCVYSEMDDMALG 230

Query: 235 GVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWV 294
            +RA +    K  ++     +G      L   +      +   +PD+      E++  + 
Sbjct: 231 AIRALKAAN-KLDNVKVYAHDGYK--KGLEAVKKGELQATASNNPDLLTSTVLEVIGQYQ 287

Query: 295 AKDVEPPKFTEVTDVVLITRDNFKEELEKKGL 326
           A     P        +LIT+DN  +  ++  +
Sbjct: 288 AGQTSFPD-YVYIPSILITKDNVDKYYKEDSI 318


>UniRef50_A6VZZ1 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Marinomonas sp. MWYL1 RepID=A6VZZ1_MARMS
          Length = 294

 Score =  206 bits (525), Expect = 9e-52,   Method: Composition-based stats.
 Identities = 54/307 (17%), Positives = 108/307 (35%), Gaps = 24/307 (7%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-I 59
           + +FT    A+ LA+        +   +   +     P++        +  K     + +
Sbjct: 4   LKRFTA--IAVALASASFNLYAKDEPVVCASLLTQSHPFYIALGNGLKEGAKLQHINLKV 61

Query: 60  KIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
            +A  D  K +N I+          VI   D K     + KA   ++ VI VD    N+K
Sbjct: 62  SVANQDLAKQINDIEDCITKNVDAIVISPVDSKGIRGPLKKAERANIPVITVDIGAENSK 121

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
                 V  +       G   G+   K++  +G       V+ ++   + +   R  G  
Sbjct: 122 -----IVSHIATDNYGGGVVAGKLAVKQLGGKGQ------VVMLSYPGISSVEARLQGFR 170

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
           DA+      + +I  V         +  +  +ML  +P+    LI    D  ++G   A 
Sbjct: 171 DAVADT---DIKIVAVQPGK-TREESMTSTINMLQANPDTD--LIFAFGDDMMIGAGLAV 224

Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
             Q  KA   + IG +G+    +    +     G +    D  G  + +++ +++     
Sbjct: 225 TKQKSKA---VVIGFDGMPEGIKAVD-ENDHIIGVVKQDADAMGKTAMKVVADYLNGKEV 280

Query: 300 PPKFTEV 306
             ++  V
Sbjct: 281 KSEYPIV 287


>UniRef50_A6DJR9 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Lentisphaera araneosa HTCC2155 RepID=A6DJR9_9BACT
          Length = 326

 Score =  206 bits (525), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 53/322 (16%), Positives = 100/322 (31%), Gaps = 29/322 (9%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAE-----------NLKLGFLVKQPEEPWFQTEWKFADK 49
           M K   AL  +    + S    ++              LG  V     P+F    + A  
Sbjct: 1   MKKLLNALMLLACLGLFSSCGESDSASSNEPLQKNKKLLGITVMTLANPFFVELAEAAKA 60

Query: 50  AGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVI 109
             +  G+EVI ++  D EK    +    +      ++   +       +  A   ++ V 
Sbjct: 61  EAEKHGYEVIILSGDDAEKQAKQMKDFISQKVDAIIVAPKNTLAIGEPIKAANAAEIPVF 120

Query: 110 AVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELD 169
             D    +   K    V  VM      G+   Q +   +   G       V+ +   +  
Sbjct: 121 TADTGCTDPGAK---VVCNVMTDNFGGGKLAAQAMIDVLPNGGK------VLILDFKKAQ 171

Query: 170 TARRRTTGSMDALKAAG----FPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIV 225
           +   R  G  + +          +  I      +     +  A    L   P++K   + 
Sbjct: 172 SCLLRVDGFKEVIAEHNEAHPDKKIVIVAELDGAAAEEPSKKATEDQLNATPDLKG--VF 229

Query: 226 GMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYK 285
            +ND + LG V A +    K  D+  IG +G+    E         +   +  P   G  
Sbjct: 230 AINDLSALGAVVALKKAN-KLQDVKIIGFDGLRIGKEAIL--RGEIHADPIQFPSEIGKL 286

Query: 286 SSEMLYNWVAKDVEPPKFTEVT 307
           + + +  +   D   P+    T
Sbjct: 287 TVQQILAYKNGDEVKPEILIAT 308


>UniRef50_Q883G4 Ribose ABC transporter, periplasmic ribose-binding protein n=4
           Tax=Pseudomonas RepID=Q883G4_PSESM
          Length = 310

 Score =  205 bits (523), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 51/306 (16%), Positives = 99/306 (32%), Gaps = 20/306 (6%)

Query: 19  QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLA 77
            S  A+ L +G  V   +  +F    +  +  GK  G ++I   A  +    ++ I+ L 
Sbjct: 22  GSTWAKELTIGLAVANLQADFFNQIKQSVEAEGKARGVKIITVDAQGNSSTQVSQIEDLI 81

Query: 78  ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137
                  +            V  A+   + VIAVD    +A G        +   +    
Sbjct: 82  TRQIDALIYIPAGATAAGVPVKAAKAAGIPVIAVDRNAPDAPG-----DTFIASDSVAGA 136

Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT 197
           +   + + K    +G        +            R  G  + LK  GFP  ++     
Sbjct: 137 KALAEYVGKVTDGKGRIA-----ILQGQLGTTPENDRAKGFQEGLK--GFPGLKVVAEQP 189

Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV 257
                   F  A  +L + P +   +  G  D+  LG  +A +        ++       
Sbjct: 190 AEWAQDKGFAVAQDLLQRDPNIT--VFFGRADAMALGAAQAVKVANLSQPVVVVG---FD 244

Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317
             V+ L    +     ++       G  +     +  A    P +  ++ + VL T+DN 
Sbjct: 245 GDVAGLKAVASGVLQATMTQQTQKMGRMAVASALDLKAGKAVPKE--QLLETVLTTKDNV 302

Query: 318 KEELEK 323
              L++
Sbjct: 303 APFLQQ 308


>UniRef50_B1ZN56 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Opitutus terrae PB90-1 RepID=B1ZN56_OPITP
          Length = 310

 Score =  205 bits (523), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 45/309 (14%), Positives = 91/309 (29%), Gaps = 16/309 (5%)

Query: 20  SAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAA 78
           +     L +GF     E  W     +      +  G ++    A  + +  + A+ S  A
Sbjct: 16  TVSQAKLTVGFAQTGSESVWRAANSESIKSEAEKQGIDLRFVDAQSNVDNQMKALRSFIA 75

Query: 79  SGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGE 138
                 V+         A++  A+   + VI +D + V     P      +     K G+
Sbjct: 76  DQVDAIVLAPLVVSGWEAVLQDAKAAGIPVIIMDRKIV---ADPSLYATFIGSDFFKEGQ 132

Query: 139 RQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTK 198
              + +     ++        V          A  R       +        +I      
Sbjct: 133 MAAEWILAHADQKRK-----IVELQGEPGSSAANERQRAFASTMATHTSDGFRIVARKVA 187

Query: 199 SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA-DIIGIGINGV 257
           +        A   +L  H      ++   ND   LG + A E  G     DI+ + I+ +
Sbjct: 188 NFRRDQGRQAMAELLTTH-GSDIEIVFAHNDDMALGAIEAIEAVGRSPGRDIMVVSIDAI 246

Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317
               E     +     ++  +P + G K  E +    +      +       ++I   N 
Sbjct: 247 KTAVEAVA--SGKLNCTVECNP-LFGPKVIEAVVRLTSGGTVMKE--TFNKDIVIDASNA 301

Query: 318 KEELEKKGL 326
            + L  +  
Sbjct: 302 AQLLPSRQY 310


>UniRef50_A1R5X6 D-ribose-binding protein n=1 Tax=Arthrobacter aurescens TC1
           RepID=A1R5X6_ARTAT
          Length = 328

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 57/317 (17%), Positives = 96/317 (30%), Gaps = 27/317 (8%)

Query: 11  IGLAAVMSQSAMA--ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGE 67
            G A   +Q A    +  K+  L+      +     +      K+LG EV +  A  D  
Sbjct: 21  TGCAPSAAQEANDGTKTKKIAVLLYSQSFEFMVALGQGVKDKAKELGVEVTVLDAKGDSS 80

Query: 68  KTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVP 127
             ++ I    A G  G V+   +       V         V  VD               
Sbjct: 81  TQISQIQDQLAQGVDGIVLSPNNSAELVPGVQMIHDAGKTVTTVDSVIPGDIA-----DA 135

Query: 128 LVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGF 187
            V     K G+   + L K M ++G     + +    A     A  R  G  D +K   F
Sbjct: 136 AVAFDNEKAGKLGAEALAKLMGEKG-----TVLEYQGAKGAYHAILRGKGFNDGIKQ--F 188

Query: 188 PEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA 247
           P  ++            A             +        ND  V G V         A 
Sbjct: 189 PGIKVIGR-DAQWTADNALSLTVDNFTADSSINGL--FSHNDEMVRGIVSGLSQINKDAP 245

Query: 248 -----DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302
                 I  +G++G      L + +      ++  +P   G  + +   + +     P  
Sbjct: 246 VGAANHIPLVGVDGT--PLALDRIRNGVQDATMDQNPFEMGALALQAQVDLLDGKQVPK- 302

Query: 303 FTEVTDVVLITRDNFKE 319
             ++TD  LIT++N  +
Sbjct: 303 -MQLTDTKLITKENVDD 318


>UniRef50_B5YAA5 ABC transporter sugar-binding protein n=2 Tax=Dictyoglomus
           RepID=B5YAA5_DICT6
          Length = 331

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 58/333 (17%), Positives = 113/333 (33%), Gaps = 26/333 (7%)

Query: 1   MHKFTKALAAIGLAAVMSQSAM-AENLKLGFLVKQPEEPWFQTEWKFADKAGKDL----- 54
           M KF      + +  +M+ +A   + L   ++ K    P F+     A K  ++L     
Sbjct: 1   MKKFLMIFFIVVIFLLMATTAQTPKKLVFAWIPKALNNPVFELGRDGAFKRAEELSKKGP 60

Query: 55  -GFEVIKIA--VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAV 111
              EV+ +A    D  +    ++ + A    G  I   DP     ++ KA    + V+  
Sbjct: 61  YKVEVLYVASVASDATEQARVVEDVVARKVDGIAISCNDPTALIDVINKAVEAGIPVMTF 120

Query: 112 DDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTA 171
           D     A          + +   + G+   + L + M   G     + V           
Sbjct: 121 D-----ADSPKSKRFTYLGVNNYEGGKWAAKLLVRAMGTSGDVALLTGV-----PGALNL 170

Query: 172 RRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDST 231
             R  G  D +K   +P+ +I       +DI          + ++P+++ W  VG+    
Sbjct: 171 EERMRGFKDEIKK--YPKIKIVTTVACYDDINRGVQVVEETMQKYPKLRGWFFVGLWPLL 228

Query: 232 VLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLY 291
              G      +  KA  +  +  + +    EL   +     G +       GY + ++LY
Sbjct: 229 AERGSMPLWEKAAKAKKVFTVAFDTL--PVELQLLKEGYLCGLVGQKYWGWGYDAIDILY 286

Query: 292 -NWVAKDVEPPKFTEVTDVVLITRDNFKEELEK 323
              V  +  P       D  ++T+ N    +  
Sbjct: 287 RKVVNNEKFPDWIDSGMD--IVTQKNVDAMIRA 317


>UniRef50_Q1M6L8 Putative substrate-binding component of ABC transporter n=1
           Tax=Rhizobium leguminosarum bv. viciae 3841
           RepID=Q1M6L8_RHIL3
          Length = 340

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 64/322 (19%), Positives = 105/322 (32%), Gaps = 16/322 (4%)

Query: 4   FTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKIA 62
             ++ A    A + + SAMA++L  G++    E P+     K  ++A K+ G + V+   
Sbjct: 24  IFRSSALTLTALLFAGSAMAKDLTFGYVPASLEYPYNVMTAKGFEEAAKEKGVKTVVIDP 83

Query: 63  VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAV-----DDQFVN 117
               EK  N++D L +           D  +    V K     + ++A+     D     
Sbjct: 84  RGSVEKQGNSLDDLLSQKVDAIGFLPLDSVVAEGFVDKVSDAKVPIVAIALQVGDSAKRQ 143

Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177
            K        LV     + G   G+     +     D      + +        +  T G
Sbjct: 144 LKDPYPGLSALVATDNYQSGVVAGEMAAGVLP---KDKTAKIGIVMGDPAYTIVKLDTDG 200

Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237
              AL  AG     I      +           + L  HP++   LI    D   +G  R
Sbjct: 201 FKAALDKAGAK-YTIVAEQPTNWTPDEGEAVCQNFLTAHPDID--LIYSHADDMAIGCAR 257

Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
           A +    K   I   G  G     +   A     YGS+   P + G    + LY    K 
Sbjct: 258 AIDASASKPKLIATGG--GSKLGHDAILA--GEMYGSVCTRPQLLGKLMFDALYEAATKP 313

Query: 298 VEPPKFTEVTDVVLITRDNFKE 319
             P       D+  IT++    
Sbjct: 314 ETPKGRFVTYDMPPITKETIDS 335


>UniRef50_B0G4U9 Putative uncharacterized protein n=3 Tax=Clostridiales
           RepID=B0G4U9_9FIRM
          Length = 338

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 54/338 (15%), Positives = 100/338 (29%), Gaps = 26/338 (7%)

Query: 2   HKFTKALAAIGLAAVMSQSAMAEN---------LKLGFLVKQPEEPWFQTEWKFADKAG- 51
                      L     Q   AE+         + +G   +  E  W     +   +   
Sbjct: 10  KVIIVLAVLALLTGCAGQEPEAEDTRTPTDDNLIVVGVSQEGSESVWRTANTRSVKETLT 69

Query: 52  KDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIA 110
           K+ G+ +I   A    E  + A+ S  +      V           ++ +AR  ++ VI 
Sbjct: 70  KENGYFLIFKNARQKQENQIKALRSFISQRVDYIVFSPIVEDGWDTVLREAREAEIPVIL 129

Query: 111 VDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQK-RGWDVKESAVMAITANELD 169
           +D +              V     + G   G+ L   ++  R  D + + V+        
Sbjct: 130 MDRKINVKD--ESLYTAWVGSDFVEEGRNAGKWLEDYLKGQRFNDDQVNIVVLQGTAGTT 187

Query: 170 TARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMND 229
               RT G  +   AA      I +            +    +L  +PE+   ++V  ND
Sbjct: 188 AMFGRTQGFEEI--AAKHENWNILEQTNADFTTAKGEEEMRRLLNTYPEID--VLVSQND 243

Query: 230 STVLGGVRATEGQGF---KAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKS 286
               G + A +  G       DI  I  +G      L K +       +  +P   G   
Sbjct: 244 DMTFGALEAIQSAGRTTGTGGDITVISFDGTK--KALEKVKTGAINVDVECNPY-QGKYI 300

Query: 287 SEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKK 324
            E++                 +  + T+ N    L  +
Sbjct: 301 EEIIQALETGQSIEKD--NYVEEKVFTQKNVLSVLNDR 336


>UniRef50_A5ZRB9 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC
           29174 RepID=A5ZRB9_9FIRM
          Length = 333

 Score =  205 bits (522), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 70/341 (20%), Positives = 130/341 (38%), Gaps = 33/341 (9%)

Query: 1   MHKFTKALAAIGLA-AVMSQSAMA---------ENLKLGFLVKQPEEPWFQTEWKFADKA 50
           M K    + ++ L   +M Q A+A         + L +  + +   +P+        +KA
Sbjct: 1   MKKRMSVVLSMALVMGIMGQCAIAVNAASKTDDDTLNITLINQGSGQPYIAAYKNCFEKA 60

Query: 51  GKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVI 109
            KDL  +V +     D  +  NAI +  +SGA G VI   DP      V +A    ++V 
Sbjct: 61  EKDLNIKVNLVDGGWDANQQANAIQNAISSGADGIVISPVDPSAVCTYVDEALDAGIEVC 120

Query: 110 AVDDQFVNAKG---KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITAN 166
           A+  Q            +TV LV    T++G        + + + G        +     
Sbjct: 121 ALTTQIGTGDAEDPVYPETVGLVGHIETEVGRTAMDIAAEALDRSGKIA-----IIEGTP 175

Query: 167 ELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVG 226
            +     R  G  +  +   +P+ ++         +  A+ A  +++  +PEV   L++ 
Sbjct: 176 GMSDTEGRKKGIDE--ENKEYPDIEVVSRVCGEWVVDKAYTAMQNIIQSNPEV--ELVIC 231

Query: 227 MNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKS 286
            +D+  +G  +A E        +  +GI G     +L K      YG+++  P+   Y +
Sbjct: 232 HSDNMAVGAAKALEDADMT-DKVKIVGIGGSKDALDLIK--KGEIYGTIMYVPETEAYTA 288

Query: 287 SEMLYNWVAKDVEPPKFTEVTDVVLI-------TRDNFKEE 320
            E     V  + E   F  V D+ L        T++N  + 
Sbjct: 289 LEATAKVVRGEAEKETFYNVQDLPLFAETGDVCTQENVDKF 329


>UniRef50_A6BDP6 Putative uncharacterized protein n=1 Tax=Dorea longicatena DSM
           13814 RepID=A6BDP6_9FIRM
          Length = 309

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 52/296 (17%), Positives = 112/296 (37%), Gaps = 21/296 (7%)

Query: 24  ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAK 82
           + LK G        P+F    +  +++ +  G  +I    + D +K    I  +   G  
Sbjct: 26  KQLKFGATYMTMNNPYFVNMDENIEESVQAKGDILITRDPLQDQKKQNEQIKDMINEGID 85

Query: 83  GFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQ 142
              +   D       +   +   + V  +D +  + +      V  ++      G +  +
Sbjct: 86  VLFLQPVDRNKVRPALELCKKKHIPVFVIDSEVSDTEA----VVSTIVSDNYDAGVQCAK 141

Query: 143 ELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDI 202
           ++ K+          + ++ +    L++   R  G  D +K  G P+ +I +    + + 
Sbjct: 142 DMMKK-------KTSANIIIVNQKALNSINERVKGFRDTIK--GHPQYKIVEEKESAAEF 192

Query: 203 PGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSE 262
             A      ++  + +  + +++G ND   LG + A +    K   ++  G++G      
Sbjct: 193 EIAMKVMEKII--YEKKNYDVVMGGNDPIALGCIAAMQMTD-KTDQVMVYGVDGSPDGKA 249

Query: 263 LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318
           + KA      G+   SP   G K+ +  Y+++A +      T    V LIT DN K
Sbjct: 250 MIKA--GFLEGTAAQSPIKIGEKAVQTAYSYLAGETVKKHVT--IPVELITADNLK 301


>UniRef50_C2L0R0 Ribose ABC superfamily ATP binding cassette transporter, binding
           protein n=2 Tax=Clostridiales RepID=C2L0R0_9FIRM
          Length = 333

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 101/298 (33%), Gaps = 20/298 (6%)

Query: 22  MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASG 80
             E   +G  +      ++ +     ++  K+ G+ + ++ A  D  K L  +       
Sbjct: 55  KGEAKTIGVSLLNSTHVFYNSIQTAMEEQAKEYGWTLDVQDAAGDANKQLGQVQDFITKK 114

Query: 81  AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140
               VI   +     +++  A    + V  +D             V  V     K G+  
Sbjct: 115 VDAIVIAPTNSAGSKSMIELAEKAGIPVFTMDIASDGKP------VTHVATDNKKGGQLA 168

Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSN 200
            + +   +       K+  V  IT +E+++   R TG  D LK    P+ ++  V   S 
Sbjct: 169 AEYVVNNI----LTEKKGNVAVITYSEIESCVDRETGFTDYLKENA-PDIKVVDVQNYSG 223

Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260
           D   A D   +ML+++  +   ++  + D   +G + +             IG +G    
Sbjct: 224 DQQKAADVMQNMLLKNDNID--VVFCVGDPAAIGALSSITAANAAT---KIIGYDGNPEG 278

Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318
               K +   +   +   P   G  + E +   +  +    +   +    +I   N K
Sbjct: 279 VAEIK-KGGNWVADVAQDPAGIGKTTLEAIKKHLEGEKVDSEI--LIAPYIIDAKNAK 333


>UniRef50_A1R356 Putative ribose ABC transporter n=1 Tax=Arthrobacter aurescens TC1
           RepID=A1R356_ARTAT
          Length = 314

 Score =  205 bits (521), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 54/308 (17%), Positives = 115/308 (37%), Gaps = 20/308 (6%)

Query: 17  MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDS 75
            + +       +G  + +    ++        KA  D G+E++   A  +  + +N + +
Sbjct: 19  AANAGGTGKKTIGVSMPEFHSLFYVAAVDGMKKAAADEGYELVVLNANGNSSQQVNQVQN 78

Query: 76  LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135
           L        +    D   G+A VA+A+G ++ VIA+D +         D    +   + K
Sbjct: 79  LVTQQVGAVIFAMQDATAGAAGVAEAKGANIPVIAIDQRPQG------DVTTFIGSDSVK 132

Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195
                   L K+M  +G       V+        T   R+ G    L+    P+ ++   
Sbjct: 133 ASTELCDYLAKQMGGKGNLAIIKGVL-----GSSTEIERSKGCGSILEKN--PDIKVVST 185

Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255
                D   A++ A  +L  +PE++   I   ND   LG  +A    G    ++  + ++
Sbjct: 186 TNADWDENKAYNVAQDVLTANPELQ--AIFAQNDGMALGAAKAAAQAGRS--NLKIVSVD 241

Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315
           G   V +    ++     ++   P   G  +       ++ +    +  ++   VL+T++
Sbjct: 242 GFPQVYDAI--ESGQVLATMSQEPYQMGELAVRTAIKAMSGEAGSIQKEQLQPTVLVTKE 299

Query: 316 NFKEELEK 323
           N +E    
Sbjct: 300 NLEEARSA 307


>UniRef50_A8RQT3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8RQT3_9CLOT
          Length = 354

 Score =  204 bits (520), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 62/341 (18%), Positives = 112/341 (32%), Gaps = 41/341 (12%)

Query: 1   MHK-----FTKALAAIGLAAVMS------------------QSAMAENLKLGFLVKQPEE 37
           M K         LA + LAA  S                   +   E + + ++ K    
Sbjct: 1   MKKRVVSILLTGLAVLSLAACTSNGLEAASATNDNAKEAEAGTEKKEGISVYWVGKTLNN 60

Query: 38  PWFQTEWKFADKAGKDLGFEVIK---IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLG 94
           PW+ +   FA +   +LG ++         D EK ++ I++     A   V+        
Sbjct: 61  PWWISVSDFAQQTADNLGVDLTIAIPQEEVDLEKQVSMIEAAIEKKADAIVVSAASSDGV 120

Query: 95  SAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWD 154
              + KAR   +K++  D +  +           V         + G+ + +++   G  
Sbjct: 121 IPAIKKAREAGIKIVNFDTRISDT----SVIDAFVGGDDVAGAYKAGKYICEQLGGEGEV 176

Query: 155 VKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLV 214
                 +     E  T   R  G M A   A +P  ++            A D   ++L 
Sbjct: 177 A-----IITGLMEQSTGVDRHAGFMQA--CAEYPGIKVVAEQGAEWSSDKAADVTTNILT 229

Query: 215 QHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGS 274
            +P VK   I   ND   +G V A +  G KA D+I +G +G+     ++          
Sbjct: 230 ANPNVK--AIFACNDQMAVGMVNAAKAAGKKADDLILVGYDGILDAVNMT--MDGDLDAF 285

Query: 275 LLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315
           +       G    ++    V           + D  L+T +
Sbjct: 286 VSLPNLDEGAMGVKLATALVMNSDYHYDREILYDCTLVTGE 326


>UniRef50_C2KUT6 Galactoside ABC superfamily ATP binding cassette transporter,
           binding protein n=3 Tax=Clostridiales RepID=C2KUT6_9FIRM
          Length = 384

 Score =  204 bits (519), Expect = 5e-51,   Method: Composition-based stats.
 Identities = 58/332 (17%), Positives = 116/332 (34%), Gaps = 18/332 (5%)

Query: 3   KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV---- 58
           K T+       AAV   S    + K+G  + Q  + +        +      GF+     
Sbjct: 56  KETEKAMEGTKAAVEEMSGDFSDKKVGVCIYQFSDNFMTLFRTELENYLVSKGFKKENIK 115

Query: 59  IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
           I     D     N I++         ++   +    + I  K +   + ++ ++ +    
Sbjct: 116 IMDGANDQATQTNQIENFITDKVDVLIVNPVNSSSAATITDKVQAAGIPLVYINREPDQD 175

Query: 119 KGKPMD----TVPLVMMAATKIGERQGQELYKEMQKR---GWDVKESAVMAITANELDTA 171
           + K  +     V  V   A + G  QG+ +      +     + K   +M     E   A
Sbjct: 176 EEKRWEEKNWDVTYVGCDARQSGTFQGEIIASVGMDKLDMNGNGKVDYIMIKGDPENIDA 235

Query: 172 RRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDST 231
           + RT  S+ AL+ AG  E         + D   A     + L ++ +    ++   NDS 
Sbjct: 236 QYRTEFSVKALQDAGM-EVNKLDEQVGNWDQALAQSLVANALAKNGK-DIEVVFCNNDSM 293

Query: 232 VLGGVRATEGQGFK-AADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEML 290
            LG ++A +  G     DI  +G++ ++         A    G++        + + +  
Sbjct: 294 ALGALQAIQAAGRTVGKDIYLVGVDALEEAC--QNVLAGTQTGTVFNDFLTQSHAAGDAA 351

Query: 291 YNWVAKDVEPPKFTEVTDVVLITRDNFKEELE 322
            N++             D V +T+DN ++ L 
Sbjct: 352 INYLGGKGN--DHYIGCDYVKVTKDNAQDVLN 381


>UniRef50_C3RLD7 Ribose ABC transporter periplasmic ribose-binding protein n=3
           Tax=Bacteria RepID=C3RLD7_9MOLU
          Length = 321

 Score =  203 bits (518), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 55/322 (17%), Positives = 102/322 (31%), Gaps = 25/322 (7%)

Query: 1   MHKFTKALAAIGLAAVMSQS---AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE 57
           M  F      + +    S     A     + G        P+F+       KA +  G  
Sbjct: 13  MMVFLCLCITLMIFGFYSYPDFKATVGQQRFGATYMTMNNPFFEVINNEIKKAVEANGDV 72

Query: 58  VIKIAV-PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116
           +I +    D +K    I  L         +   D K     +  A+   + VI VD    
Sbjct: 73  LITLDPILDVDKQNEQILDLIDQRVDAIFVNPIDAKKIEIGLKAAKKAKIPVIVVDAPIY 132

Query: 117 NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTT 176
           +           +       G    +++  +          + ++ +      +A  R  
Sbjct: 133 DESLVN----CSIASNNYDAGVLCAKDMMSK-------RDHAKIILLEHATAKSAVERIQ 181

Query: 177 GSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 236
           G +D + +      Q+         I  A      ML + P+V   +++ +ND + LG +
Sbjct: 182 GFLDTIASNA--NYQVINRADCDGQIEIAMPTMKQMLKETPDVD--VVMALNDRSALGAL 237

Query: 237 RATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296
            A E    +  +++  G++G   V EL          +   SP   G  + +     +  
Sbjct: 238 AAIES--MEIDNVLVYGVDGSPDVKELIN--TGLIQATAAQSPVKMGQLAYQKAKALLEN 293

Query: 297 DVEPPKFTEVTDVVLITRDNFK 318
                K      V LI+RDN  
Sbjct: 294 KKIEKKIE--VPVELISRDNIS 313


>UniRef50_C7QJZ0 Periplasmic binding protein/LacI transcriptional regulator n=5
           Tax=Actinomycetales RepID=C7QJZ0_CATAD
          Length = 371

 Score =  203 bits (518), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 54/298 (18%), Positives = 96/298 (32%), Gaps = 18/298 (6%)

Query: 28  LGFLVK-QPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGFV 85
           +GF        P+  TE        K LG ++I+  A  D     + I+ + A GAK  +
Sbjct: 84  VGFSQSESTSNPFRSTETDSITNQAKSLGVKLIQRNANADVNAQNSQIEDMIAQGAKVLI 143

Query: 86  ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145
           +   +       +A+A+   + V+ +D           D +  +        +    +L 
Sbjct: 144 VAPENSDGLGPALAEAKAKKIPVLTIDRTVTGT--ACSDFIAFIGSNFYGQAQIAADDLA 201

Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205
                +         +       +    RT G  D +K A +P   +    T   D    
Sbjct: 202 TATGSQAKVA-----ILSGTPGNNVTTDRTNGFQDQVK-AKYPNMTVVASQTGKFDQTDG 255

Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA-DIIGIGINGVDAVSELS 264
                 ML  +P +    +   ND   LG ++A    G K   DI  + I+G      + 
Sbjct: 256 QSVMAQMLQANPGIT--AVYAENDEMALGAIQAITAAGKKPGKDIKIVSIDGTQ--QAVQ 311

Query: 265 KAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELE 322
              A   Y  +  +P   G  +   L  +        K          T+ N ++ L 
Sbjct: 312 DVAAGTIYADVETNPR-FGPLAFSSLQAFFGTSGVASKVIIKDSHF--TQANAQQALS 366


>UniRef50_C0CSL0 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica
           DSM 10507 RepID=C0CSL0_9FIRM
          Length = 389

 Score =  203 bits (518), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 52/311 (16%), Positives = 101/311 (32%), Gaps = 28/311 (9%)

Query: 17  MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL---GFEVIKI-----AVPDGEK 68
            + +  ++       VK  E   +Q      +   +D    G ++           D E 
Sbjct: 83  GAITKSSDEYSFAGNVKAFENVVWQEIANGYEGFAEDATAAGCKLSVDTTSPMGESDEEG 142

Query: 69  TLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPL 128
            L+ +      G    ++           +  A   D+ V AV+++F  A          
Sbjct: 143 QLSILKDQVRKGVNAVLLSPISDANCLPGIEAAHEADIPVYAVNNEFNGADM-------F 195

Query: 129 VMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFP 188
           V   + + G+   + + +++   G        + +   +    R RT G  +        
Sbjct: 196 VGPNSLEQGQLAAEWVNEKLGGSGDVA-----IVMGMAKTAVTRNRTQGFEEWFADND-S 249

Query: 189 EKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK-AA 247
           + Q+        D   A D A + L  +P++K   I   ND   LG + A +        
Sbjct: 250 DIQVVAKQNADWDRSQAKDVAATFLKTYPDLK--AIFCNNDVMALGVIEAVKEADLTLNK 307

Query: 248 DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVT 307
           DI  IG +G     +  +A       ++   P   GY ++E+ Y  +     P      T
Sbjct: 308 DIYVIGCDGQSEAYDSIRANE--MAATIDTFPYYEGYMAAEVCYRSLIGQTVP--RVVFT 363

Query: 308 DVVLITRDNFK 318
              ++   N  
Sbjct: 364 PSKMLDSTNVD 374


>UniRef50_A6M1Q7 D-galactose-binding periplasmic protein n=4 Tax=Clostridium
           RepID=A6M1Q7_CLOB8
          Length = 361

 Score =  203 bits (517), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 54/353 (15%), Positives = 113/353 (32%), Gaps = 33/353 (9%)

Query: 1   MHKFTKALAAI----GLAAVMSQSAMA------ENLKLGFLVKQPEEPWFQTEWKFADKA 50
           + K +  L  +     L++  +    A      + +K+G  + + ++ +     K  +  
Sbjct: 13  IKKLSGLLTVVSIFNVLSSCSANVKSANYSNDIKEIKIGVTLYKQDDAFISEISKNIEDI 72

Query: 51  GKDL----GFEVIK---IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARG 103
            K+      +++I     A  +     N +D   A       +   D    S I+ KA+ 
Sbjct: 73  AKEKENQGKYKIIVNVADAKGNLINQSNQVDKFVAQNYDVICVNMVDRTAASMIIDKAKS 132

Query: 104 YDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQK------RGWDVKE 157
            ++ ++  + + V    +  + +  V   A + GE Q   +    +K      +  D K 
Sbjct: 133 ANIPIVFFNREPVEEDMERWNKLYYVGADAQQSGEMQANIIINAYKKDNKMVDKNGDGKI 192

Query: 158 SAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHP 217
             VM         +  RT   +  +   G  E +     T +     A    +  +    
Sbjct: 193 QYVMLEGEQGHQDSLIRTEYCIKTITQNGI-ELEKLADDTANWQSAQATTKMSQWIKNFG 251

Query: 218 EVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLP 277
           + K  ++   ND   LG + A           + +GI+G+     L   +     G++L 
Sbjct: 252 D-KIEVVFSNNDEMALGAINAINDANIGGKKPLVVGIDGL--PKALEAVKNGSMIGTILN 308

Query: 278 SPDVHGYKSSEMLYNWVAKDVE------PPKFTEVTDVVLITRDNFKEELEKK 324
                      + Y   +                 T    +T DN    +E K
Sbjct: 309 DSKKQANAIFNLAYTLASHGNVNSIEGLEKGKYIRTPHAEVTSDNVDLYIENK 361


>UniRef50_D2Q6W7 D-ribose-binding protein RbsB n=2 Tax=Bifidobacterium dentium
           RepID=D2Q6W7_9BIFI
          Length = 327

 Score =  203 bits (516), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 56/340 (16%), Positives = 121/340 (35%), Gaps = 29/340 (8%)

Query: 1   MHKF----TKALAAIGLAAVMSQSA------MAENLKLGFLVKQPEEPWFQTEWKFADKA 50
           M K       A+AA  +A + +  A       ++N ++  + K   + ++ +  + AD A
Sbjct: 1   MKKSKYIALAAVAAFTVAPLSACGAGQSNGSESKNYEIAMVAKGFSQSFWVSVHQGADDA 60

Query: 51  GKDLGFEVIKIAVPD---GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMK 107
               G  V      +    +K  + + +          I   D    +  V  A+   + 
Sbjct: 61  AAKYGATVTFNGPDNDSQVDKQADMVQNAINKSPDAVAIAPLDEAALTPAVQSAKSASIP 120

Query: 108 VIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANE 167
           + A D  F             V  +  ++G+   + L   +  +G        +   +  
Sbjct: 121 LFAFDTAFET---NADAITSTVKTSNREVGKVAAENLIALLNGKGKYA-----VIAHSQT 172

Query: 168 LDTARRRTTGSMDALKAAGFPEKQIY-QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVG 226
             T+  R  G +D +K    P+ ++  +V   + D   A D A+++L  +P++    I  
Sbjct: 173 DATSTERRDGFLDYMKKNA-PDMEMVGEVQYSNADQAKAQDIASAILQANPDLD--AIFA 229

Query: 227 MNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKS 286
            N++TV+G     E        ++ +G++   A       +     GS+  +P   GYK+
Sbjct: 230 TNEATVVGAATPVESALKSGHKVLLVGVDSGKAQQ--QYIRDGVISGSVSQNPYQIGYKT 287

Query: 287 SEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKKGL 326
            E     +  +                 DN  ++  ++ +
Sbjct: 288 IENAVKSLNGEKIDKVIDS--GCFWYNADNIDDDDVQQAM 325


>UniRef50_C6D2L3 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Bacillales RepID=C6D2L3_PAESJ
          Length = 332

 Score =  203 bits (516), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 50/305 (16%), Positives = 102/305 (33%), Gaps = 20/305 (6%)

Query: 25  NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPD---GEKTLNAIDSLAASGA 81
           ++ +    K     +++      + A  + G  V  I  P     +     +        
Sbjct: 39  DIIVTVKAKSSAIDFWKVLITGVEDAANEFGANVTVIGPPSETEIDTQTEQLKQAIRQKP 98

Query: 82  KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141
              V+   D      +  +     +K+I VD +  +        +  +       GE+ G
Sbjct: 99  DAIVMAATDYNRLVPVAQQIVKAGIKLITVDSRINSDDA-----LSFIATDNIAAGEKAG 153

Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201
           +E+ K + +          +        +   R  G    L+  G    ++         
Sbjct: 154 EEMAKLLPE---SSSSKVAIMSYVYGTSSQLEREKGVRQWLE--GHSHIEVASTLYSEGR 208

Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261
           +  A++    +L + P +K   IVG+N+ + +G  RA    G     +  +G +    V 
Sbjct: 209 LEKAYELTKELLSEDPGIKG--IVGLNEPSTVGAGRAIRDLGLS-GKVKLVGFDSS--VD 263

Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEEL 321
           E+   +      +++  P   GY S +     V     P      T+ V+I +DN   E 
Sbjct: 264 EVKLIEGGVLQATIVQKPYNMGYLSVKTAIEAVRGKKVPK--LIDTESVIINKDNMYTEQ 321

Query: 322 EKKGL 326
            +K L
Sbjct: 322 NQKLL 326


>UniRef50_C5EU51 D-galactose-binding periplasmic protein n=4 Tax=Clostridiales
           RepID=C5EU51_9FIRM
          Length = 350

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 55/336 (16%), Positives = 112/336 (33%), Gaps = 30/336 (8%)

Query: 1   MHKFTKALAAIGLAA------------VMSQSAMAENLKLGFLVKQPEEPWFQTEWKFAD 48
           M +    L A+ L                 +     ++++G L+ + ++ +  T     +
Sbjct: 1   MKRNWIYLLAVCLGIGILIGFWQYRENEGQRQTKKNSIRIGVLLYRGDDTFIGTLRAGLE 60

Query: 49  KAGKDL----GFEV---IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKA 101
              K+     G +V   I  +        + ++ L + G     I + D    S I+ KA
Sbjct: 61  DKAKEYEQKTGIKVKLDILDSKGSQNTQNSQVERLISLGCDALCINSVDRSSASIIIDKA 120

Query: 102 RGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKR------GWDV 155
                 V+  + + V       + +  V   A +    QG  L    +K         + 
Sbjct: 121 MDAGTPVVFFNREPVEEDMNRWEKLYYVGADAKESAVLQGDALVDAYRKDSRTLDANGNG 180

Query: 156 KESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQ 215
             S V+         +  RT  S+  LK  G P ++I      + D   A       L +
Sbjct: 181 LVSYVLLEGETSHQDSLIRTEWSIQTLKDGGVPLEKITGGI-ANWDRSQASALMEQWLKE 239

Query: 216 HPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSL 275
           +P  +  L+V  ND   LG + A    G  A  I  +GI+G      +   +    + ++
Sbjct: 240 YPG-QIELVVSNNDDMALGAIDAMNRAGIGANSIKVVGIDGT--PVGIKALEEGTLFATV 296

Query: 276 LPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311
               + +     ++ ++      +P     + +   
Sbjct: 297 ESDKERYAQAIFDIAWSLSLDQ-DPKSVVPLVNGKY 331


>UniRef50_Q97J33 Ribose ABC transporter (Ribose-binding periplasmic component) n=2
           Tax=Firmicutes RepID=Q97J33_CLOAB
          Length = 325

 Score =  202 bits (515), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 47/299 (15%), Positives = 98/299 (32%), Gaps = 21/299 (7%)

Query: 23  AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG-FEVIKIAVPDGEKTLNAIDSLAASGA 81
               K G         +++          +  G   V + A  D  K +  I        
Sbjct: 41  GSRKKFGATYMTTNNRFYEIINDEIRSVVESNGDILVTRDAALDKNKQMQQIYEFIKLKV 100

Query: 82  KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141
           K   I   D K     +  A+   + VI VD    + K         V+      G +  
Sbjct: 101 KAIFINPVDWKQIKPALIAAKNAGIPVIVVDTPVYDDK----LVACTVISDNYDAGVQCA 156

Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201
           + L K          ++ +M I  ++  +   R  G +D + A+   + +I         
Sbjct: 157 KYLMK-------SKSKANIMLIEHSKAKSGIDRIKGFVDTIGAS--KQYKIVAAGDSEGQ 207

Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261
           +       + ++ +H  V    I+ +ND + LG + A +  G     ++  G++G     
Sbjct: 208 LDKTMSLVDDLIKKHTNVD--AIMALNDPSALGALAALKENGL-LGKVMVFGVDGSPEAK 264

Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320
            +          +    P+  G+ ++E  Y+ +              + LI+++N  + 
Sbjct: 265 TMI--HDGFMTATSAQFPNKIGHIAAEKAYDILKGKRLKRDVI--VPISLISKENLLKY 319


>UniRef50_A8F472 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Thermotoga lettingae TMO RepID=A8F472_THELT
          Length = 314

 Score =  202 bits (514), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 44/333 (13%), Positives = 95/333 (28%), Gaps = 37/333 (11%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTE----WKFADKAGKDLGF 56
           M K    L  I      +        ++G  +   +  W             +   D   
Sbjct: 1   MKKVLIFLLLIVTILSFA------KFRVGVAIPAADHGWTGGMVWWAQYAIKQYANDPDV 54

Query: 57  EVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116
           E   +   +  + +  + +L A G    VI   +    + I  +A    +  I VD    
Sbjct: 55  EFYLVTAKEPSEQIAQVQALLAKGIDALVINPYESAPLTPICVQAFRDGIFTIIVDRGIN 114

Query: 117 NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTT 176
           + +         +       G   G+ + +++  +G       V+ I          R  
Sbjct: 115 SEE-----YNVYIAGDNYMYGYLAGKYIAEKLGGKGN------VVVIEGIPSTINTERVE 163

Query: 177 GSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 236
               AL+   +P  +I            AF+   ++L + P +    +   +D  + G +
Sbjct: 164 AFKKALEP--YPNVKIIAQQPGYWSREKAFEIMQTLLTKFPNID--AVWTGDDDMLHGVL 219

Query: 237 RATEGQGFKAADIIGIGINGVDAVSELSKAQATG--FYGSLLPSPDVHGYKSSEMLYNWV 294
            A +  G     ++  G         + K    G    G     P      +  +    +
Sbjct: 220 LALKQAGRDKNIVLVGG----ACEKNIVKMIMDGHPLIGVDFTYPPNMISTAINLAVMAL 275

Query: 295 AKDVEPPKFTEVTD------VVLITRDNFKEEL 321
             +     +              +T++N K+  
Sbjct: 276 KGEHLNGFYQRGIPRKIILSTETVTKENAKDYY 308


>UniRef50_C0C0J1 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM
           15053 RepID=C0C0J1_9CLOT
          Length = 333

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 56/339 (16%), Positives = 112/339 (33%), Gaps = 37/339 (10%)

Query: 1   MHK-FTKALAAIGLAAVMSQSAMAEN--------------LKLGFLVKQPEEPWFQTEWK 45
           M K F  A   + +   ++  +  E               +K+ F + +    +++  W 
Sbjct: 1   MKKRFLAAFLCLTMCLSLAACSSGEKEKKGSDSGDKKEESVKVAFSIPEMFSTFWEACWY 60

Query: 46  FADKAGKDLGFE-VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGY 104
             +K  K+ G+E  +     D E  ++ + S    G     +   + +     +      
Sbjct: 61  GFEKQAKEYGWEATLLDPQGDLELQISQLQSQVTKGVDAIGVAPIENEAIGPALTTVNEA 120

Query: 105 DMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAIT 164
            + V  VD +           V  +     K GE   ++L K+  +         ++   
Sbjct: 121 GVPVFCVDRRGEGE------VVSTLETDNVKAGEAMAEQLVKDYGE-----DVDVLIIQG 169

Query: 165 ANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS-NDIPGAFDAANSMLVQHPEVKHWL 223
                    RT G  + L+   +    I   P+        A     + L  +P++   +
Sbjct: 170 VLSDTPTLDRTQGVKNVLEK--YENITIVGEPSAGEYSNEAALATTKNFLETNPDLD--V 225

Query: 224 IVGMNDSTVLGGVRATEGQGF--KAADIIGIGINGVDAVSELSK-AQATGFYGSLLPSPD 280
           I    D+ V G V A +  G   K  +   +GI  VD   E+ K  +     G+    P 
Sbjct: 226 IFTCTDALVPGIVAALKEAGKTGKVGEENHVGIYSVDGAGEVLKLIEDGTVDGTFSQYPI 285

Query: 281 VHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
             G  + + +  ++       K     DV  +T +N  +
Sbjct: 286 QFGIDTVKSMKTYLDGGKVEEKVYYNGDV--VTDENIDK 322


>UniRef50_C0DAQ0 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme
           DSM 15981 RepID=C0DAQ0_9CLOT
          Length = 332

 Score =  202 bits (514), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 46/309 (14%), Positives = 104/309 (33%), Gaps = 24/309 (7%)

Query: 15  AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-----IAVPDGEKT 69
                ++  +  K+ F+VK  +  +F    + A+K G+D   ++           + E+ 
Sbjct: 43  GGGQTASTGQKYKIAFIVKSLQSAFFINMTEAAEKCGQDYADKISVEIMAPQTPFNIEEQ 102

Query: 70  LNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLV 129
           +  ++    +     VI   D +     + KA    + V+  +      K    D V  V
Sbjct: 103 IQLVEQCITNKMDAIVIAPCDSEGIVPAIKKANDAGILVVTANT-----KANGGDIVSYV 157

Query: 130 MMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPE 189
                 +G      L++++  +G       ++        T+  R  G  +ALK   +P 
Sbjct: 158 GAQNFDVGYSLATALFEKLGGQGK-----VILIEGKAGNSTSEERAEGFKEALKE--YPG 210

Query: 190 KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADI 249
            ++        D   A     + L  + ++    ++ +     LG + A +  G     +
Sbjct: 211 IELLASQPADWDRASAMTVMENCLQTYDQIDG--VLTLTKDMGLGTIEAIKSAGRDKEIV 268

Query: 250 IGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDV 309
                +  D V    KA     Y S   +     Y +       +          ++  +
Sbjct: 269 SMT-FDVDDDVISALKA--GDLYASGNQNEQSQAYIAIMTAVFALDGYKVDSS--QIMPI 323

Query: 310 VLITRDNFK 318
            ++T ++F+
Sbjct: 324 TVVTAEDFQ 332


>UniRef50_C8P3T0 D-galactose-binding periplasmic protein n=1 Tax=Erysipelothrix
           rhusiopathiae ATCC 19414 RepID=C8P3T0_ERYRH
          Length = 360

 Score =  201 bits (513), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 58/337 (17%), Positives = 120/337 (35%), Gaps = 29/337 (8%)

Query: 1   MHKF----TKALAAIGLAAVMSQSAM-------AENLKLGFLVKQPEEPWFQTEWKFADK 49
           M K       +L A+ L    S+           +   +G  + + ++ +     +    
Sbjct: 1   MKKLSKLILVSLLALTLFGCSSKGGAEGNANEGGKTYNIGVAIYKFDDNFMTLYREELAS 60

Query: 50  AGKDLG------FEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKAR 102
             K++G      +++ I+    D       I++  A G    +    DP    +I+  A+
Sbjct: 61  YFKEVGEKDGNTYKLDIQDGKQDQANQTEQINNFIAQGKDLIIANMVDPTAAGSIINSAK 120

Query: 103 GYDMKVIAVDDQFVNAKGK-PMDTVPLVMMAATKIGERQGQELYKEMQKRG---WDVKES 158
             ++ V+ ++ +    + +        V   AT+ G  QG  +   ++ +G    D   S
Sbjct: 121 AKEIPVVFINREPETQELEIWPGKTTYVGADATQSGTIQG-YMIANLENKGDIDGDGSVS 179

Query: 159 AVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPE 218
            +  +       A++RT  S+  L+  G     + Q    + D     +   + L Q   
Sbjct: 180 YITLMGDPANVDAKQRTEYSVKGLEEKGVKTNALAQPYQANWDTAKGQEFTANALEQFGN 239

Query: 219 VKHWLIVGMNDSTVLGGVRATEGQGFKAA-DIIGIGINGVDAVSELSKAQATGFYGSLLP 277
            K  ++   ND   +G V A E  G K   DI  +G++ +    EL K       G++L 
Sbjct: 240 -KLEVVFANNDGMAVGAVTAIEAAGRKVGEDIFVVGVDAIPDAIELLK--GGKLTGTVLN 296

Query: 278 SPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314
                 + + ++    +             D V +T+
Sbjct: 297 DHFNQSHTAVDVALELLQGKDV--SAYYWHDYVGVTK 331


>UniRef50_C4IB16 Ribose ABC transporter n=1 Tax=Clostridium butyricum E4 str. BoNT E
           BL5262 RepID=C4IB16_CLOBU
          Length = 324

 Score =  201 bits (513), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 56/315 (17%), Positives = 101/315 (32%), Gaps = 22/315 (6%)

Query: 8   LAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDG 66
              I    V S++ +    K+G         +F+   +      ++ G  +I        
Sbjct: 26  CIYISSNGVYSENGVESKRKIGATYMTMNNSYFKIINEEIRYVVEENGDTLITRDPALSL 85

Query: 67  EKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTV 126
           +K +  I            I   D       +  A+        +             T 
Sbjct: 86  DKQIEEIYDFIDLKVDAIFINPVDWVGIRNALIDAQKAG----IIIIAIDTDIYDDDLTA 141

Query: 127 PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAG 186
             V+    K G    ++L             + ++ +      +A  R  G  DA++   
Sbjct: 142 CTVVSDNYKAGVLCAEDLM-------NKRNSANIILLEHKSAKSAIDRINGFEDAIRNN- 193

Query: 187 FPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKA 246
               ++         +  A     ++L++  +V    I+ +ND + LGG+ A E +  K 
Sbjct: 194 -KNFKVVARSDCDGQLETAMPVVENILLKQKDVDT--IMALNDPSALGGIMALEEKNIKG 250

Query: 247 ADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEV 306
             I   GI+G     ++ K        ++  SP   G  S E LYN         K   V
Sbjct: 251 --INVYGIDGSPDGKKMVK--EDKMSATVSQSPRKIGRISGESLYNIFQGKEVDKKI--V 304

Query: 307 TDVVLITRDNFKEEL 321
             V LIT++N  E  
Sbjct: 305 VPVELITKENIDEFR 319


>UniRef50_Q3JM30 L-arabinose ABC transporter, periplasmic L-arabinose-binding
           protein n=105 Tax=Bacteria RepID=Q3JM30_BURP1
          Length = 456

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 141/302 (46%), Positives = 200/302 (66%), Gaps = 2/302 (0%)

Query: 26  LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAIDSLAASGAKGFV 85
           +K+GF+VKQP++PWFQ EW+FA++A KD  F ++KIA P GEK   A+DSLAA  A+G +
Sbjct: 156 VKIGFVVKQPDDPWFQDEWRFAEQAAKDKHFTLVKIAAPSGEKVSTALDSLAAQKAQGVI 215

Query: 86  ICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELY 145
           IC PD KLG  I AKAR Y MK+++VDDQ V+ +G P+  VP + ++A +IG + G  + 
Sbjct: 216 ICAPDVKLGPGIAAKARRYGMKLMSVDDQLVDGRGAPLADVPHMGISAYRIGRQVGDAIA 275

Query: 146 KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGA 205
            E ++RGW+  E  V+ +  ++L TAR RTTG++DALKAAGF    +   P  + D  GA
Sbjct: 276 AEAKRRGWNPAEVGVLRLAYDQLPTARERTTGAVDALKAAGFAAANVVDAPEMTADTEGA 335

Query: 206 FDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVD-AVSELS 264
           F+AAN    +H   KHW+  G ND T +G VRA EG+G  A D+I +GING   A++E +
Sbjct: 336 FNAANIAFTKHRNFKHWVAFGSNDDTTVGAVRAGEGRGIGADDMIAVGINGSQVALNEFA 395

Query: 265 KAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKK 324
           K + TGF+GS+L +P +HGY +S  +Y+W+ ++  PP    +T   LITR N K    + 
Sbjct: 396 KPKPTGFFGSILLNPRLHGYDTSVNMYDWITQNRAPPPVV-LTSGTLITRANEKTARAQL 454

Query: 325 GL 326
           GL
Sbjct: 455 GL 456


>UniRef50_C7G6J4 Putative galactose ABC transporter, periplasmic galactose-binding
           protein n=3 Tax=Firmicutes RepID=C7G6J4_9FIRM
          Length = 383

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 55/308 (17%), Positives = 104/308 (33%), Gaps = 18/308 (5%)

Query: 26  LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE----VIKIAVPDGEKTLNAIDSLAASGA 81
            K+G  + Q  + +        +    + GF      I     D       ID+    G 
Sbjct: 78  KKVGVCIYQFSDNFMTLFRTELENYLVEKGFSKDNITIVDGANDQATQTGQIDNFITEGV 137

Query: 82  KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD----TVPLVMMAATKIG 137
              +I   +    + I  K     + ++ ++ +    + K        V  V   A + G
Sbjct: 138 DVLIINPVNSSSAATITDKVVAAGIPLVYINREPDEEEQKRWSDNNWDVTYVGCDARQSG 197

Query: 138 ERQGQELYKEMQKR---GWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194
             QG+ +            + K   VM     E   A+ RT  S+ AL+ AG  E     
Sbjct: 198 TFQGEMISDLGLDTVDLNGNGKIDYVMVEGDPENVDAQYRTEYSVKALEDAGL-EVNCLS 256

Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA-DIIGIG 253
               +     A     + L Q+      ++   ND+  LG ++A +  G     DI  +G
Sbjct: 257 DQVGNWQQDQAQQIVANALGQYGN-DVEVVFCNNDAMALGALQAIQSAGRTVGTDIYLVG 315

Query: 254 INGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLIT 313
           ++ +     L    A    G++        + +++   N++             D V +T
Sbjct: 316 VDAL--SEALEDVLAGTMTGTVFNDHFSQSHSAADAAINYITGAGN--DHYIGCDYVKVT 371

Query: 314 RDNFKEEL 321
           +DN ++ L
Sbjct: 372 KDNAQDVL 379


>UniRef50_C0CUK5 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme
           DSM 15981 RepID=C0CUK5_9CLOT
          Length = 336

 Score =  201 bits (512), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 47/350 (13%), Positives = 100/350 (28%), Gaps = 53/350 (15%)

Query: 1   MHKFTKALA-----AIGLAAVMSQSAMA-------------------------ENLKLGF 30
           M K    L      A  L      ++ A                         +     F
Sbjct: 1   MKKMLACLLSFTILASTLTGCTVGASNATAAENQAPAETQASNEPAQAADPSVKTYNFVF 60

Query: 31  LVKQPEEPWFQTEWKFADKAGK---DLGFEVIKI-AVPDGEKTLNAIDSLAASGAKGFVI 86
           +VK  +  +  +    A+ A     ++  + I        E+ +  ++     GA   +I
Sbjct: 61  IVKSMQFSFMLSMIDGAEAAAALVPNINIKCIGPETPYSVEEQIQLVEQAITDGADAILI 120

Query: 87  CTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYK 146
              D       + KA    + +        N K    D +  + +    +G   G  L +
Sbjct: 121 TPADSTGIVPAIEKANAAGIPIAT-----PNTKAYGGDVLTWIGVDNYTVGYELGTALCE 175

Query: 147 EMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAF 206
            ++  G       V+        T+  R  G +DA K   +P  ++        +     
Sbjct: 176 ALEGTGK-----VVLIEGTAGNSTSTERVDGYLDAFK--NYPGIELLDSQPADFNREKGM 228

Query: 207 DAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKA 266
               + L ++PE+    +  +N    +G + A +  G     +     +  +   +   A
Sbjct: 229 TVMENFLQRYPEIDG--VGSINKDMTMGAIEACKAVGRDKEMVQVT-FDVDNDCLDAIDA 285

Query: 267 QATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316
                  +           +              P+  +   + L+T+DN
Sbjct: 286 --GDILITGAQEEKSQIANAIYACLLACNGYKVAPE--QYIPMTLVTKDN 331


>UniRef50_Q2T4S7 L-arabinose ABC transporter, periplasmic L-arabinose-binding
           protein n=33 Tax=Proteobacteria RepID=Q2T4S7_BURTA
          Length = 340

 Score =  201 bits (511), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 147/324 (45%), Positives = 206/324 (63%), Gaps = 4/324 (1%)

Query: 6   KALAAIGLAAVMSQSAMAEN--LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV 63
            A AA+ +A +   +A   +  LK+GFLVK PE+ WF  E K A   G+  GF V+ I  
Sbjct: 18  AAFAALVIAPLAMPAATRADTPLKIGFLVKMPEQAWFINEQKAATALGQKEGFSVVNIGT 77

Query: 64  PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPM 123
           PDGEK L AID+L + GA+GFVIC PD +LG AI A+A+ YDMK + VDDQ V++ GKP+
Sbjct: 78  PDGEKVLAAIDNLGSQGAQGFVICAPDVRLGPAIAARAKRYDMKFVTVDDQLVDSSGKPL 137

Query: 124 DTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALK 183
             VP + M+ATKIG + GQ +  EM+KRGW  +E   + +T  EL TA+ RT G+  AL 
Sbjct: 138 ANVPHLGMSATKIGNQVGQAIADEMKKRGWKPEEVGALRVTNYELPTAKLRTDGATQALL 197

Query: 184 AAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQG 243
           A+GF ++ I+  P K+ D  G F AA  +L +HP VK W+I  +N+ TVLG VRATE   
Sbjct: 198 ASGFKKENIFDAPQKTTDDEGGFSAAAPVLARHPNVKKWVIFALNEETVLGAVRATEQLH 257

Query: 244 FKAADIIGIGINGV-DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302
             AAD+IG+GING  +A +E  K + TGF+G++  S   HG +S++ L +W+     PP 
Sbjct: 258 IPAADVIGVGINGAGEAFAEFQKKEPTGFFGTIAVSSTNHGKQSAQNLVDWIRSGKAPPA 317

Query: 303 FTEVTDVVLITRDNFKEELEKKGL 326
            T+ T   L+TR+N++    + G+
Sbjct: 318 DTQ-TSGKLMTRENWQAVRAELGI 340


>UniRef50_C6D2L0 Periplasmic binding protein/LacI transcriptional regulator n=10
           Tax=Bacteria RepID=C6D2L0_PAESJ
          Length = 333

 Score =  201 bits (511), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 54/349 (15%), Positives = 111/349 (31%), Gaps = 41/349 (11%)

Query: 1   MHKFTKALAAIGLAAVMSQS--------------------AMAENLKLGFLVKQPEEPWF 40
           M KFT  L    +  VM  +                    A  + + +  + K  +  ++
Sbjct: 1   MKKFTALLVVALMTVVMLSACGSNNSDGSSKSGTDNGGTKASGDKIYIPIISKGFQHQFW 60

Query: 41  QTEWKFADKAGKDLGFEVIKIAVPD---GEKTLNAIDSLAASGAKGFVICTPDPKLGSAI 97
           Q     A+KA  +   E+           +K +  + +              D +    +
Sbjct: 61  QAVKAGAEKAATEFNVEITFEGPETEAQVDKQIEMLQAALDKKPSAIGFAALDSQASVPL 120

Query: 98  VAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKE 157
           + KA+   + VIA D    +        +                ++ + +   G     
Sbjct: 121 LQKAKAAGIPVIAFDSGVDSDIP-----ITTASTNNVAAAALAADKMAELIGGEGEIG-- 173

Query: 158 SAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHP 217
              + +      T   R  G ++ +K   +P  +I  +     D   + D A +M+  HP
Sbjct: 174 ---VIVHDQTSVTGVDRRDGFVNRIKE-KYPNIKIVDIQYGGGDHLKSTDLAKAMIQAHP 229

Query: 218 EVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLP 277
            +K +   G N+ + +G + A      K   I  IG +   A  +  K  +    G++  
Sbjct: 230 NIKGF--FGSNEGSAVGVINAVTEL-KKEGQITVIGFDSGKAQIDAIK--SGVMAGAITQ 284

Query: 278 SPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKKGL 326
           +P   GY++ +     +  +         T      + N   +  K  L
Sbjct: 285 NPVGIGYETVKAAVEAIRGEKVESTID--TGFYYYDKSNIDSDEIKAVL 331


>UniRef50_UPI00016C56B8 bifunctional carbohydrate binding and transport protein n=1
           Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C56B8
          Length = 349

 Score =  201 bits (511), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 66/335 (19%), Positives = 112/335 (33%), Gaps = 24/335 (7%)

Query: 1   MHKFTKALAAIGLAAVMSQSAM-AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-- 57
           M +    L    +  + S  A   E   +  + K      +Q+  + A++   DL  E  
Sbjct: 1   MARVHLYLLLAAVLPIASGCARRGEEYTIVVIPKGLSHEHWQSVRRGAERCAADLEAEDG 60

Query: 58  ----VIKIAVP---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIA 110
               VI        D  + +  +D   A+GA   V+        +A V +A    + V+ 
Sbjct: 61  TRVRVIFDGPLRERDALEQIRIVDRRVATGASALVLAPQHSATMTACVKRAADAGVPVVI 120

Query: 111 VDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDT 170
           +D    +    P   V  V       G   G+ L +E+Q+R  D K   ++   A     
Sbjct: 121 IDSGLDD----PNHFVKYVATDNYNGGRLAGRHLIRELQRRRKD-KPKLILFRYAVGSQA 175

Query: 171 ARRRTTGSMDALKAAGFPEKQIYQVP-TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMND 229
              R  G  D +K    P  +              A   A  +++Q    +   I   N+
Sbjct: 176 TEDRERGFEDEVKER-CPGAEWLSTDKYAGATRDSAMREAGPLILQFGN-QVDGIFAPNE 233

Query: 230 STVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEM 289
           S+  G       QG     +  +  +G   +  L   Q     GS+L  P   GY S+  
Sbjct: 234 SSASGTADVLRAQGLNQ-KVALMAFDGSKPL--LQSIQQGDVIGSILQDPYRMGYLSAWY 290

Query: 290 LYNWVAKDVEP---PKFTEVTDVVLITRDNFKEEL 321
               +  +       + +E T   LIT +N     
Sbjct: 291 CVRHLRGEDMNNGRREMSEGTGEYLITAENVTSAF 325


>UniRef50_B0P063 Putative uncharacterized protein n=1 Tax=Clostridium sp. SS2/1
           RepID=B0P063_9CLOT
          Length = 326

 Score =  200 bits (510), Expect = 4e-50,   Method: Composition-based stats.
 Identities = 51/296 (17%), Positives = 103/296 (34%), Gaps = 21/296 (7%)

Query: 25  NLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKG 83
               G         +++          +  G ++I      D +K    I  L       
Sbjct: 44  KKLFGATYMTMNNEFYKIVNNQIRMQVEKNGDQMITLDPALDQKKQNEQIKQLVKRKVDA 103

Query: 84  FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143
             +   D K     +  A+   + VI +D Q   +    M  V        K G    +E
Sbjct: 104 IFLNPVDWKAVEPGLVAAKKAKIPVIVIDSQVYRSDLVAMTIV----SDNYKAGVLCAKE 159

Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203
           + K+         ++ ++ +T N   +A  R  G +D +K       +I         I 
Sbjct: 160 MMKQ-------KDQANIVLLTHNAARSAVDRINGFLDTIKNN--KNYKILASADTQGQIE 210

Query: 204 GAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSEL 263
            A    + ++ ++  +   +++G+ND   +G + A + +G +   ++  GI+G     +L
Sbjct: 211 RALPKVDKIIEEYQNID--VVMGLNDPAAMGALAALDSKGAREG-VLVYGIDGSPEGKKL 267

Query: 264 SKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
            K       G+   SP      +    Y  +  +    K   V  V +IT+ N ++
Sbjct: 268 IK--EGMMTGTAAQSPKQMADTAVNAAYQILQGEKVEKKK--VISVQMITKKNVEQ 319


>UniRef50_C5VG88 Sensor protein n=2 Tax=Prevotella RepID=C5VG88_9BACT
          Length = 878

 Score =  200 bits (510), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 46/321 (14%), Positives = 97/321 (30%), Gaps = 24/321 (7%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAG-KDLGFEVI 59
           M +    +    L          +   +G      +  W          +  +     + 
Sbjct: 3   MKQ-WLYILIFTLLFSACSDNNVKKYVIGVSQCSEDI-WRDKLNNELVMSTYQHDNVTLK 60

Query: 60  KIAVPDGEK-TLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
             +  D ++     I+     G    ++        S+++ KA    + VI  D +  + 
Sbjct: 61  FASANDNDRLQKQQIEQFIKEGVNLLIVSPNQIHTISSVIDKAYDAGIPVILFDRKTDSK 120

Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
           K         +     + G   G  + +++  +G   +              A  R  G 
Sbjct: 121 K-----YTAFIGADNYEAGYEIGNFIGQQLDGKGNIAE-----ICGLQASSPAIERNRGF 170

Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238
           MDALK   +   ++               A +S+L Q  E     +   ND   LG +++
Sbjct: 171 MDALK--DYSGIKVIARKHGDWVKESGVMAMDSVLSQAKEP-IQYVFAQNDRMALGALQS 227

Query: 239 TEGQGFKAADIIGIGINGVDAV-SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
            +    K   I  +GI+ +      +   +      S +      G    ++  N +  +
Sbjct: 228 IKK--HKVKGIRIVGIDALPVPGGGMENVRDGNLEASYIYPTR--GDSVMQLALNIL--E 281

Query: 298 VEPPKFTEVTDVVLITRDNFK 318
            +P K        L+T+ N  
Sbjct: 282 KKPYKRDNYLKGALVTKANAN 302


>UniRef50_A4BF94 D-ribose-binding periplasmic protein n=1 Tax=Reinekea blandensis
           MED297 RepID=A4BF94_9GAMM
          Length = 319

 Score =  200 bits (509), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 51/302 (16%), Positives = 110/302 (36%), Gaps = 21/302 (6%)

Query: 19  QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPD---GEKTLNAIDS 75
           Q+   +  K+  ++K    P++    + A +A  +LG E+I  +  +    E+ ++ ID 
Sbjct: 29  QATPVDKPKVLLVMKSLVNPFYIQMEQGARQAANELGVELIVRSGTNETLVEQQISLIDE 88

Query: 76  LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA--KGKPMDTVPLVMMAA 133
             A+G    VI   D      ++ +A    +K++ +D++      +   +  +P V +  
Sbjct: 89  QLAAGIDALVIAPADSIAILPVLIRANELGVKIVNIDNRIDTNAIQRAGLPAIPFVSVDN 148

Query: 134 TKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIY 193
              G   G+ L +            A++         AR R  G+  AL+       ++ 
Sbjct: 149 EFGGYEAGKILAELAG-----PDAKALIIEGPRSAINARERRDGARRALQEN---NIEVV 200

Query: 194 QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIG 253
                S  +  A+    ++  ++PE+   +I   ND   LG +   +  G    D +  G
Sbjct: 201 ASEVASWKLESAYALTQNVHARNPELN--VIFAANDMMALGALLYAQEHGLN--DWLIAG 256

Query: 254 INGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLIT 313
            + +       +        ++    D  GY+      + +           +    +IT
Sbjct: 257 FDNIPDARAAVR--EGRLAVTIDQQADRQGYQGVATAVDLLNDKAV--DDVVLVKTRVIT 312

Query: 314 RD 315
            D
Sbjct: 313 AD 314


>UniRef50_B5XZZ5 Sugar ABC transporter, periplasmic sugar-binding protein n=7
           Tax=Enterobacteriaceae RepID=B5XZZ5_KLEP3
          Length = 311

 Score =  200 bits (509), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 56/322 (17%), Positives = 118/322 (36%), Gaps = 18/322 (5%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           M      L A  L A    +  AE   +  +V   + P++ +E K A +  + LG++   
Sbjct: 1   MKLRITLLTAATLTAFSFAAHAAEKGTIMIMVNSLDNPYYASEAKGASEKAQALGYKTTV 60

Query: 61  IAVP-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
           ++   D +K    ID+      +G ++   D     A + KA+   + V+ ++ +     
Sbjct: 61  LSHGEDVKKQNELIDTAIGKKVQGIILDNADSTASVAAIEKAKKAGIPVVLINREIPVDD 120

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
                    +     + G        ++M ++G   + +          +    R+    
Sbjct: 121 VALEQ----ITHNNFQAGSEVANVFVEKMAEKGKYAELTC-----NLADNNCVTRSKSFH 171

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
             +    +P+            +       +S+L  HP+VK   ++  N    LG + A 
Sbjct: 172 QVIDQ--YPDMVSVAKQDAKGTLIDGKRIMDSILQAHPDVKG--VICGNGPVALGAIAAL 227

Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
           +       D+I +GI+G +   +  KA       +++        +    L N++ K  +
Sbjct: 228 KAANRS--DVIVVGIDGSNDERDAVKA--GTLQATVMLQAQAIAAQGVTDLDNYLQKGEK 283

Query: 300 PPKFTEVTDVVLITRDNFKEEL 321
           P K   +   +LIT+DN  +  
Sbjct: 284 PAKQRVMFRGILITQDNADKVQ 305


>UniRef50_C6VSM5 Sensor protein n=1 Tax=Dyadobacter fermentans DSM 18053
           RepID=C6VSM5_DYAFD
          Length = 904

 Score =  199 bits (508), Expect = 7e-50,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 93/302 (30%), Gaps = 22/302 (7%)

Query: 19  QSAMAENLKLGFLVKQPEEPWFQTEWKFADKA-GKDLGFEVIK-IAVPDGEKTLNAIDSL 76
                +   +GF     ++ W +       +        ++I   A  +    +  I+ L
Sbjct: 18  AGKQEDAYVIGFSQCTGDDEWRRAMLDGMQRELAFHNNTKLIFRDAHANSAVQVKQIEEL 77

Query: 77  AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136
             +G    ++   +    + ++ KA    + V+ VD +  +           V     ++
Sbjct: 78  LRNGIHLLIVSPNESDPLTPVIEKAYKQGVPVVVVDRRTSSP-----YYTAYVGGDNYQV 132

Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196
           G+  G+     +   G       +          A  R  G +DAL     P  +     
Sbjct: 133 GKTVGEYAAALLGGNGKM-----IEITGLPRSSPASDRHRGLVDALATR--PSIRRVATL 185

Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256
                   A      +L + P++   LI   N+   +G         F    I  IG++G
Sbjct: 186 NGQWQKDIAKSELRKVLPRFPDLD--LIFAQNEVMAMGAREVCNDI-FPDRKIRVIGVDG 242

Query: 257 VDAV-SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315
           +     ++          + L      G +++ +  N +    +P +   +    +I   
Sbjct: 243 LPGQFGDIQMVYDGHITATALYP--TGGEEAARVAMNIL--QKQPYQKENLLQTAIIDSS 298

Query: 316 NF 317
           N 
Sbjct: 299 NV 300


>UniRef50_Q2YI92 Putative two-component system sensor histidine kinase n=1
           Tax=unidentified microorganism RepID=Q2YI92_9ZZZZ
          Length = 511

 Score =  199 bits (508), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 50/301 (16%), Positives = 96/301 (31%), Gaps = 24/301 (7%)

Query: 20  SAMAENLKLGFLVKQPEEPWFQTEWKFADKAG-KDLGFEVIKIAVPDG-EKTLNAIDSLA 77
           S   +   +G      +  W + +              E+   A  D  E+ +  IDSL 
Sbjct: 19  SQGGKRYTIGVSQCSEDI-WREKQNAELRMGAYFHDNVELKFAAAYDSDERQVQQIDSLM 77

Query: 78  ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137
             G    ++        S  + +A    + VI  + +  + K         +     ++G
Sbjct: 78  NEGIDLLIVAPNQVNTISPAIDRAYDKGIPVIVFERKTGSQK-----YTAFISADNYEMG 132

Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT 197
              G+ +   +  +G  ++   +          A  R  G MDA+K    P  ++     
Sbjct: 133 HVMGEYIVSRLHGKGNVLEIKGLA-----GSSPAIERHNGFMDAIKDE--PGIKVVGSLQ 185

Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV 257
                  A   +   L  +  V   L+ G ND T +G   A           +  GI+G+
Sbjct: 186 GDWTEATACQKSKEWLAANEGVPVDLVFGANDRTAMGAREAL------GEKPLYCGIDGL 239

Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317
              +   +        +    P  HG +  ++    +     P +   +    L+T DN 
Sbjct: 240 PGKNGGIQLVRDSLLDASFIYP-THGDQLMDLAIRILEGQ--PYEKETMLMSALVTHDNA 296

Query: 318 K 318
           K
Sbjct: 297 K 297


>UniRef50_A8RKK5 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8RKK5_9CLOT
          Length = 350

 Score =  199 bits (508), Expect = 8e-50,   Method: Composition-based stats.
 Identities = 44/309 (14%), Positives = 105/309 (33%), Gaps = 23/309 (7%)

Query: 17  MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV---IKIAVPDGEKTLNAI 73
                  E  ++  +++  +  +         K  ++   ++      +  D    ++ +
Sbjct: 58  GPGGTSGEPAEVSVIIETFDNTFASFVMNAMKKYEEEHKDKIHITYLDSKQDANTQISQV 117

Query: 74  DSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAA 133
           ++   +G +  +    D K    IV   +   + +IA +  F N           V    
Sbjct: 118 ENQILNGTQAIICLAVDAKQSEPIVRACKEAGVPLIAFNRIFEN-------CDSFVGADG 170

Query: 134 TKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIY 193
              G    +   ++   +G     + +M       +    R    ++ L    +P+ Q+ 
Sbjct: 171 AVAGSLLARFTGEKTGGKGNVAIVNGIM-----GQENQFIRRDAIVETLGEM-YPDMQVV 224

Query: 194 QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIG 253
                      A     + L    ++    I+ +ND   +G   A E  G K+ DII  G
Sbjct: 225 IEGAGDWKRDKALQLVETWLQSGTDID--AILCLNDDMAMGTQLAVEQAG-KSDDIIVCG 281

Query: 254 INGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLIT 313
           +NG      ++  +      ++  +PD    ++ E    ++  +   P+   +    L+T
Sbjct: 282 VNG--DPDGINAVRDGKIAATVFQNPDRQAEEALEAALQYIHGEK--PESKIMIPFELVT 337

Query: 314 RDNFKEELE 322
            DN  + ++
Sbjct: 338 ADNVDDYVQ 346


>UniRef50_C6AR66 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Rhizobium leguminosarum bv. trifolii WSM1325
           RepID=C6AR66_RHILS
          Length = 333

 Score =  199 bits (508), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 49/337 (14%), Positives = 99/337 (29%), Gaps = 33/337 (9%)

Query: 2   HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV--- 58
            +     A +      + +  A+ + +GF           T  K       +   +V   
Sbjct: 6   RRMLIISAGLATVLTAAPAFSADKIVIGFSQASSNSAHRNTMTKRNQAYAAEHFKDVDLI 65

Query: 59  IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
           +  A     K ++ ++SL   G K  +I   D    +  + +     + VI ++      
Sbjct: 66  VTNAEGKSAKQISDVESLMVQGMKVLMISAQDSAAIAPTIKQVLAAGIPVITLERSLD-- 123

Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
               +     V      IG   G+ + + ++ +G       V       +  A  R  G 
Sbjct: 124 ----IPVTLHVGPHNKPIGTLAGKYIAEALKGKGN-----VVEIKGDPAVAPAVERHEGF 174

Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238
            +A+        ++        D   A       L + P  +   +   ND+   G +RA
Sbjct: 175 AEAIAGTE---IKVIAETHADWDQEKALKFMEDTLQRFPAGQIQAVYAHNDNMAFGALRA 231

Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK-- 296
            +  G     I+ IGI+G +A   +          +   S      +     +       
Sbjct: 232 IQAAGRDKEGILIIGIDGENA--AIRAVAKGDLTATFTYSTV--APEGVIAAHALATNDT 287

Query: 297 ----------DVEPPKFTEVTDVVLITRDNFKEELEK 323
                       +           +IT++N  E   K
Sbjct: 288 AALEKLGTLTKKDDGSMEIEIASKMITKENAAEFFCK 324


>UniRef50_B5XQK7 Sugar-binding domain protein, LacI family n=7 Tax=Proteobacteria
           RepID=B5XQK7_KLEP3
          Length = 317

 Score =  199 bits (507), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 59/320 (18%), Positives = 109/320 (34%), Gaps = 17/320 (5%)

Query: 3   KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE-VIKI 61
           +       +  +     +A A       +    +  +F    K A  A K  G + VI  
Sbjct: 10  RLLAVATTMLASMSFISAASAAGPTYALVQINQQALFFNLMNKGAQDAAKASGKDLVIFN 69

Query: 62  AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121
           +  +     +AI++    G KG ++   D       V +A   ++ VIA+D         
Sbjct: 70  SNDNPVAQNDAIENYIQQGVKGILVAAIDVNGIMPAVKEAAAANIPVIAIDAVLPAGP-- 127

Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181
                  V +   + G   GQ     +QK         ++    + +    +R  G  + 
Sbjct: 128 ---QAAQVGVDNIEGGRIIGQYFVDYVQKEMGGQARLGIVGALNSAIQN--QRQKGFEET 182

Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241
           LK+   P+  I  V    N    A  AA +++  +P++    I    +  +LG + A E 
Sbjct: 183 LKSN--PKITIANVVDGQNVQDKAMTAAENLITGNPDLT--AIYATGEPALLGAIAAVEN 238

Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301
           QG    DI   G +       +S          L   P+  G ++   L +  +    P 
Sbjct: 239 QGR-QKDIKVFGWD--LTAKAISGMDGGYVTAVLQQDPEKMGAEALNALNSITSGKTVPK 295

Query: 302 KFTEVTDVVLITRDNFKEEL 321
             T +    ++T+ N     
Sbjct: 296 --TILVPATVVTKANVDSYR 313


>UniRef50_A5G0N2 Periplasmic binding protein/LacI transcriptional regulator n=4
           Tax=Proteobacteria RepID=A5G0N2_ACICJ
          Length = 345

 Score =  199 bits (507), Expect = 9e-50,   Method: Composition-based stats.
 Identities = 54/285 (18%), Positives = 92/285 (32%), Gaps = 18/285 (6%)

Query: 24  ENLKLGFLVKQPE-EPWFQTEWKFADKAGKDLGFE--VIKIAVPDGEKTLNAIDSLAASG 80
             L +GF   +    P+   E K    A K       +   A  +  + +  ++++   G
Sbjct: 54  SKLVVGFSQSESNANPFRAGETKSVRDAAKAFHVRRLIYTNAHSNQSRQVADVENMINQG 113

Query: 81  AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT-KIGER 139
           A+  +I   D        A+A    + ++ +D +   A  K  D +  +      K GE 
Sbjct: 114 AQALIIAPLDSTGLQPAFAQAAAKHIPILTLDRR--TAGSKCSDYLSFLGSNFYFKQGEI 171

Query: 140 QGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKS 199
             +EL K         +        A        RT G    LKA  +P  +I    T +
Sbjct: 172 DARELAKATGGHAMVAE-----IQGAYGNSVEVARTKGFAAGLKA--YPGMKIVTEQTGN 224

Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259
                A    + +L+ HP V    +    D+   G + A    G K   +  + I+G   
Sbjct: 225 WFTTDAQKVMSQILLAHPNVN--AVYAQADTMAFGAITALRDAGKKPGQVKIVSIDGTR- 281

Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFT 304
              +        Y     +P   G  +   L NW      P    
Sbjct: 282 -QGVQDIVDGWIYADDETNPR-FGPIAFHELQNWFDGKPVPRHIV 324


>UniRef50_A9GMT2 Put. D-ribose-binding periplasmic protein n=2 Tax=Bacteria
           RepID=A9GMT2_SORC5
          Length = 340

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 51/300 (17%), Positives = 106/300 (35%), Gaps = 23/300 (7%)

Query: 26  LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTLNAIDSLAASGAK 82
           L++  + K     ++++    A KA ++L  +V+        D +  ++ + S  A G  
Sbjct: 41  LRIAVVPKGTTHEFWKSVHAGAVKASRELDVDVVWKGPLREDDLKAQVDVVSSFVAQGVS 100

Query: 83  GFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQ 142
           G V+   D     A V  AR   + V+  D    +        V  V       G   G+
Sbjct: 101 GIVLAPLDATALRAPVRAARQAKIPVVVFDSDLASDD-----HVSFVATDNEAAGRLAGE 155

Query: 143 ELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV-PTKSND 201
            L K + + G       V+        + + R  G +DA++A   P   +          
Sbjct: 156 HLGKAIGEDGK-----VVVLRYQEGSASTQHREKGFLDAVRA--MPGVTVASENQYGGAT 208

Query: 202 IPGAFDAANSML--VQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259
              AF  + S+L   +  E     +   N+ST  G ++A          +  +G +  + 
Sbjct: 209 TESAFHKSESLLLAQRAAEGAIAGVFTPNESTTFGMLQALRKTNVAR-KVKFVGFDASEK 267

Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
           +    +         ++ +P   GY + + +   +  +    +    T   ++TR +  +
Sbjct: 268 LLGALR--EGDIEALVVQNPFNMGYVAVKTMVAHLHGEKVAARID--TGSRVVTRQDLDD 323


>UniRef50_D1PGW4 Sensor protein n=1 Tax=Prevotella copri DSM 18205
           RepID=D1PGW4_9BACT
          Length = 935

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 49/322 (15%), Positives = 96/322 (29%), Gaps = 24/322 (7%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMA-ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI 59
           M +    +  + +  +++  A       +G      +  W           G+ L   +I
Sbjct: 1   MKRKLHLIIYVAIIVLLTGCAQKPRKFVIGVSQCSEDI-WRDKLNDELKM-GEYLNDSLI 58

Query: 60  K---IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116
                +  D       ++     G    ++        S  V +A    + VI  D +  
Sbjct: 59  VKLASSNDDNVLQNKQVNQFIDEGVDLLIVSPNQLSAISKSVERAYDKGIPVILYDRKTN 118

Query: 117 NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTT 176
           + K         +      IG+  G  + +++Q +G       V          A  R  
Sbjct: 119 SDK-----YTAFIGCDNYTIGKSMGTFIAQQLQGKG-----RIVEISGLEGSSPALERHR 168

Query: 177 GSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 236
           G MDA+K   +P  Q+      +    G   A   +L Q  +     +   ND    G  
Sbjct: 169 GFMDAIKP--YPGLQVVASEEGNWKEEGGIQAMKRILKQTQDFD--YVFAHNDCLAWGAY 224

Query: 237 RATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296
            A      K  +    G++G+       +    G + +    P   G +   +    +  
Sbjct: 225 VAARQMRVKR-NYKYTGVDGMATEGGGLELVRDGIFEASYLYPTK-GDEVIALAMKILKH 282

Query: 297 DVEPPKFTEVTDVVLITRDNFK 318
              P +        +IT+ N  
Sbjct: 283 Q--PYERDNYLSTSIITQANAA 302


>UniRef50_A6W303 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Marinomonas RepID=A6W303_MARMS
          Length = 325

 Score =  199 bits (507), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 61/317 (19%), Positives = 126/317 (39%), Gaps = 26/317 (8%)

Query: 4   FTKALAAIGLAAVMSQSAMAENLK-LGFLVKQPEEPWFQTEWKFADKAGKDLGFE----V 58
              ++ A+ L+ ++SQS+  + LK +G  V     P+F    + A    ++L  E    +
Sbjct: 28  LAVSVIAVSLSPLVSQSSEPQPLKSIGISVADLGNPYFVQLVETASVKAEELAGEPVKML 87

Query: 59  IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
           I+    D ++ +  I+          V+   D    +A+VAKA+   +KVIAVD     A
Sbjct: 88  IRSDAYDWQRQIGQINDFIDQKVDLIVLTAADEYKVAAVVAKAQRAGIKVIAVDVNAQGA 147

Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
                     +     + G    ++L +++  +G  V  + V+        +   R  G 
Sbjct: 148 D-------ATITTDNVQAGAIACEKLAEKINYQGNFVIINGVLV------SSVIERVAGC 194

Query: 179 MDALKAAGFPEKQIY-QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237
             AL    +P+  +       +  + G  +A   ++ ++  +    +  +ND T  G +R
Sbjct: 195 KSAL--NKYPDITLLSDRMNGTGSVEGGMEAMTYLMEEYDHID--AVFTINDPTAFGALR 250

Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
           A +    K  + +   I+G    +E+ K Q   +  + +  P     K+ E+  + +   
Sbjct: 251 AAQQANRK--EFVLASIDGAPFATEIIKQQDNPWIATAVQRPIPMAEKAIEIGMDLLKGK 308

Query: 298 VEPPKFTEVTDVVLITR 314
               +F  +    LI +
Sbjct: 309 EVAQRF-ILIPSTLIEK 324


>UniRef50_B4UZK6 D-allose-binding periplasmic protein n=2 Tax=Streptomyces
           RepID=B4UZK6_9ACTO
          Length = 322

 Score =  199 bits (506), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 53/301 (17%), Positives = 97/301 (32%), Gaps = 21/301 (6%)

Query: 27  KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA---VPDGEKTLNAIDSLAASGAKG 83
           K+  + +    P++      A   GK  G +V   A     D       I +LA  G   
Sbjct: 21  KIAIVTRNFTNPYWAALRDGAIAEGKKQGVKVEVQAGASETDSTGENAKISTLAGQGYNC 80

Query: 84  FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV--NAKGKPMDTVPLVMMAATKIGERQG 141
           F +   +       +       + ++ +D Q     +K   +     +       G++ G
Sbjct: 81  FGVVPVNATNVITPLVPVAQRKIPILNLDTQIDANASKQAGVSYASFIGSDNLSAGQQAG 140

Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201
           + L K M  +G       +             R  G  + +      +  I        D
Sbjct: 141 EGLLKLMGGKGEVAILQGIA-----GEQNGINRQKGFTEKVAG----KLDIVATQPADYD 191

Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261
                    ++L  HP++    I   ND+  LG  +A    G     +  I ++G+ A  
Sbjct: 192 QAKGQTVTEAILKAHPKITG--IFAANDTMGLGAAQAVRNAGLT-GKVSIISVDGISAAL 248

Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEEL 321
           E  KA      G++   P   G  + +   + VAK   P +      + LI   N  + +
Sbjct: 249 EAVKA--GTLSGTISQYPYAEGQLAVQACIDLVAKKKVPSRIVA--PIALIDSTNVDKAI 304

Query: 322 E 322
            
Sbjct: 305 S 305


>UniRef50_A0R773 Sugar ABC transporter substrate-binding protein n=1
           Tax=Mycobacterium smegmatis str. MC2 155
           RepID=A0R773_MYCS2
          Length = 332

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 54/308 (17%), Positives = 105/308 (34%), Gaps = 18/308 (5%)

Query: 9   AAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---PD 65
            ++ L       + ++ +K+G + K    P+F    + A       G ++I +A     D
Sbjct: 19  GSLVLGMTACGGSGSDGVKVGLITKTDSNPYFVHLREAAQAQADKDGAQLIAVAGAFDGD 78

Query: 66  GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDT 125
            E  + AI+++   G KG +I           + KAR   + VIA+D             
Sbjct: 79  NEGQVTAIENMVGQGVKGILITPNSSTGVLDAIKKARDAGVVVIALDTATDPEDA----V 134

Query: 126 VPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAA 185
                      G  QG+ +   +     +     VM            R  G ++     
Sbjct: 135 DATFATDNKAAGVAQGKWVKAALG----NTPPQVVMLDGTPGGTVDTFRHDGFLEGFGLT 190

Query: 186 GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK 245
                +I      + D   A  A  ++L + P V    +  +N+    G  +A +  G  
Sbjct: 191 DNSP-EIVGQENTNGDQTKAQTAMENLLQRAPGVN--ALYTINEPAAAGAYQAIQAVGR- 246

Query: 246 AADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTE 305
           A  +    I+G    + ++  +A     +++  P        + +  +     +P  F +
Sbjct: 247 ADQVTIGSIDGS--CTGVADVKAGKIGATVMQFPAKMAELGVQAVVKFAEDGTKPSGFND 304

Query: 306 VTDVVLIT 313
            T   LIT
Sbjct: 305 -TGSELIT 311


>UniRef50_B2JDH5 Periplasmic binding protein/LacI transcriptional regulator n=83
           Tax=Proteobacteria RepID=B2JDH5_BURP8
          Length = 321

 Score =  199 bits (506), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 60/319 (18%), Positives = 103/319 (32%), Gaps = 24/319 (7%)

Query: 3   KFTKALAAIGLAAVMSQSAMAENL--KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           + T A AA+ L   +   A A+    K+G   ++   P+F T  K  + A   +G  V+ 
Sbjct: 20  RATLAFAAVMLGTPLLAPAAADAAPLKIGMTFQELNNPYFVTMQKALNDAAASIGATVVV 79

Query: 61  -IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
             A  D  K ++ ++ +        ++   D     + V  A+       A         
Sbjct: 80  TDAHHDVSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVTSAKK------AGAVVVAVDA 133

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
                    V       G+   + L K +   G       V  +    +     R  G  
Sbjct: 134 NANGPVDSFVGSKNFDAGQMSCEYLAKAIGGSGE------VAILDGIPVVPILERVRGCK 187

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
            AL    FP  ++        +   A     +M+  HP +K   I  +ND   +G + A 
Sbjct: 188 AALAK--FPNVKVVDTQNGKQERATALSVTENMIQAHPNLKG--IFSVNDGGSMGALSAI 243

Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
           E  G    DI    ++G        +   + F  +    P      +  +          
Sbjct: 244 ESSG---KDIKLTSVDGAPEAITAIQKPNSKFIETSAQFPRDQIRLAIGVALAKKWGANV 300

Query: 300 PPKFTEVTDVVLITRDNFK 318
           P   T   DV L+ +DN K
Sbjct: 301 PK--TIPVDVKLVDKDNAK 317


>UniRef50_C5EPY5 ABC-type sugar transport system n=2 Tax=Clostridiales
           RepID=C5EPY5_9FIRM
          Length = 332

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 56/299 (18%), Positives = 102/299 (34%), Gaps = 17/299 (5%)

Query: 26  LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP--DGEKTLNAIDSLAASGAKG 83
           L++GF   + + PW   +     +A    G + I         E  +  I  L       
Sbjct: 42  LRVGFSQIETDNPWRTAQINSFREALIPNGMDFIYHEPERYTVEWQVEDIHRLIREKVDY 101

Query: 84  FVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQE 143
            VI   D    + ++  A+  D+ VI +D             + L+     K G+     
Sbjct: 102 LVIVPADLASLAPVLQDAKEADIPVILIDQSAETIDQSY--YISLISADYLKEGQICADL 159

Query: 144 LYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203
           L ++      D     V          A+ R+ G   AL+   +P  +I  +   + D  
Sbjct: 160 LAEKFG----DTPCRIVEIYGTESSPGAQARSKGFHQALQQ--YPNMEIIDIEYGNFDRV 213

Query: 204 GAFDAANSML--VQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261
            A  A  + L            +   +D   LG ++A +  G     I  + ING+  V 
Sbjct: 214 TAQKAMENALIKASTSGQPIDAVFAHSDEDGLGALQAIKVAGLAPGRISIVSINGIQDVC 273

Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320
           +     A  + G++  +P   G+  + ++          P  T +    +IT +N  E 
Sbjct: 274 KAI--IAGEYLGTVESNPR-WGFIVASLIQQKERG--YKPFPTVMIPYRIITAENAAEY 327


>UniRef50_B2SY92 Periplasmic binding protein/LacI transcriptional regulator n=7
           Tax=Burkholderia RepID=B2SY92_BURPP
          Length = 317

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 59/314 (18%), Positives = 102/314 (32%), Gaps = 22/314 (7%)

Query: 6   KALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVP 64
            A  A GL+ + + +A A  LK+G   ++   P+F T  K  + A   +G  V+   A  
Sbjct: 21  LATLAFGLSFIAAPAAQAAPLKIGMTFQELNNPYFVTMQKALNDAAASIGATVVVTDAHH 80

Query: 65  DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124
           D  K ++ ++ +        ++   D     + V  A+       A              
Sbjct: 81  DVSKQVSDVEDMLQKKIDILLVNPTDSTGIQSAVTSAKK------AGVVVVAVDANANGP 134

Query: 125 TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA 184
               V       GE   + L K +   G       V  +    +     R  G   AL  
Sbjct: 135 VDSFVGSKNYDAGEMACEYLAKSIGGSGE------VAILDGIPVVPILERVRGCKAALAK 188

Query: 185 AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF 244
           A  P  ++        +   A     +M+  HP +K   +  +ND   +G + A E  G 
Sbjct: 189 A--PGVKLVDTQNGKQERATALSVTENMIQAHPNLKG--VFSVNDGGSMGALSAIESSG- 243

Query: 245 KAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFT 304
              DI    ++G        +   + F  +    P      +  +          P   T
Sbjct: 244 --KDIKLTSVDGAPEAIAAIQKPNSKFVETSAQFPADQVRIALGIALAKKWGANVPK--T 299

Query: 305 EVTDVVLITRDNFK 318
              DV +I + N K
Sbjct: 300 IPVDVKMIDKSNAK 313


>UniRef50_D1PGX0 Putative DNA-binding response regulator/sensor histidine kinase n=1
           Tax=Prevotella copri DSM 18205 RepID=D1PGX0_9BACT
          Length = 497

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 49/321 (15%), Positives = 104/321 (32%), Gaps = 23/321 (7%)

Query: 1   MHKFTKALAAIGLAAVMS-QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAG-KDLGFEV 58
           M +    L  +  + ++   +   +N+ +G         W +       +A  +    ++
Sbjct: 1   MKRINIILIVLSFSMLLLLGACTQKNVVIGVSQCCGG-VWREKVNNEMRQAQYQYKNVDL 59

Query: 59  IKI-AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117
           +   A  DG+     IDS+ A      V+   +    +  + +A    + VI  D +   
Sbjct: 60  LFTTAENDGQCQARQIDSMIARKVDLIVVAPDNVNDVTPAIERAYRAHIPVILFDRKVKT 119

Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177
                      +     + G    + L  ++  +G     + V      +      R  G
Sbjct: 120 P-----HYTASIGGDNVEAGREVARFLASKLDGKG-----TVVEITGLKDASPVIERHRG 169

Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237
             + +K   +P  ++      +  +  A +     L +        + G +D   +G   
Sbjct: 170 FHEVMK--NYPGIKVV-TLESNWKLERAQELMKQYLDKGGHADG--VFGHSDLGAIGAFL 224

Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
             E +G     ++ +GI+G+    E       G + +    P   G K  E+  N +   
Sbjct: 225 EAERRGID-KQMLIVGIDGLPGEWEGVDRVKRGQFAASYVYP-TQGEKIMELAMNILQGK 282

Query: 298 VEPPKFTEVTDVVLITRDNFK 318
             P K   V    L T +N  
Sbjct: 283 --PYKKDNVMKSFLATPENCD 301


>UniRef50_C6L1I6 ABC sugar transport system, periplasmic protein n=1 Tax=uncultured
           bacterium RepID=C6L1I6_9BACT
          Length = 324

 Score =  198 bits (505), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 55/318 (17%), Positives = 113/318 (35%), Gaps = 17/318 (5%)

Query: 3   KFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA 62
           K T  L A     +    AMA + + G L+K    P++    +  +   ++ G      A
Sbjct: 5   KTTLKLGAAFATLLAVTPAMA-DGEYGVLMKTLANPFWGAMGQGVEAGAQEAGVAYYMQA 63

Query: 63  VPD---GEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA- 118
           V      E  LN  +++        +    +       +  A+   +KV+ +D     A 
Sbjct: 64  VESDQAAEPQLNVCNTMLERNPVAMITAAINSTNLLPCLKSAQDAGIKVVDLDGNLDQAI 123

Query: 119 -KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177
              + ++    +       G +  + +  ++   G D     ++    +   T ++R +G
Sbjct: 124 LDAEGIEITFRIGSDNVLAGAQGAEYVVSQL---GADATGPVLVIEGLSGNITGQKRASG 180

Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237
             D L     P  +I        D   A +  N +L ++P +    I   ND   LG V 
Sbjct: 181 FADKLAELA-PGLEIVASLPGDWDRGKAANITNDILTRNPGL--VAIFAANDGMALGAVE 237

Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
           +    G K  ++I +G++G      +          S+   P + G ++ E +   V   
Sbjct: 238 SVFAAG-KGGEVIIVGVDGN--SDAVKSINEGRLTASVAQLPYLVGKQAVENVKIAVEGG 294

Query: 298 VEPPKFTEVTDVVLITRD 315
               +       +++T+D
Sbjct: 295 EVAKEII--VPTLVLTKD 310


>UniRef50_A1WJI7 Periplasmic binding protein/LacI transcriptional regulator n=102
           Tax=Proteobacteria RepID=A1WJI7_VEREI
          Length = 358

 Score =  198 bits (504), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 53/292 (18%), Positives = 99/292 (33%), Gaps = 19/292 (6%)

Query: 14  AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKA--GKDLGFEV-IKIAVPDGEKTL 70
                     +  K+G  V   +  + Q       K    KD   ++ +     D     
Sbjct: 41  TGPALAQQAKKTWKVGAAVYGLKAEFAQLWVNALKKHPLVKDGTVKLTVFDGKYDALTQN 100

Query: 71  NAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVM 130
           N  +++      G +    D + G+  V+KA   ++ V+  + +  + K      +  V 
Sbjct: 101 NQFETMITQKYDGILFVPIDLQAGADAVSKAAEANIPVVGSNGRVNSDK-----LLSYVG 155

Query: 131 MAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEK 190
                 G  Q Q +   M  +G       V+            R  G++  L    +P  
Sbjct: 156 SNDVIAGAMQAQAVVDAMGGKGN-----VVILEGPIGQSGQVERRQGNLSVLAK--YPNV 208

Query: 191 QIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADII 250
           ++ ++ T +     A     + L  H   K   I+G ND   LG + A + +G     I 
Sbjct: 209 KVLEMKTANWSRAEALSLTENWLTAHAG-KINGIIGQNDEMALGAIEAVKAKGLDPKTIP 267

Query: 251 GIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPK 302
             GI+G   VS+  +A   G   S+L         + ++L   +      P+
Sbjct: 268 TAGIDG---VSDAVRAVKAGIMASVLQDASAQSQGALDVLLRKLIGASYKPR 316


>UniRef50_A5Z738 Putative uncharacterized protein n=2 Tax=Clostridiales
           RepID=A5Z738_9FIRM
          Length = 369

 Score =  198 bits (504), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 59/308 (19%), Positives = 106/308 (34%), Gaps = 29/308 (9%)

Query: 23  AENLKLGFLVKQPEEPWFQTEWKFAD---KAGKDLGFEVI-----KIAVPDGEKTLNAID 74
              LK+G + K     +++      +   K  KD G +V           D        D
Sbjct: 70  KGGLKMGAIAKSFSNEFWRNFKNGYEQSEKVLKDAGVDVSIKIDGTTDESDEIGQQTMTD 129

Query: 75  SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134
           +L   G    ++        +A V  A+G  +  I V+       G        V   A 
Sbjct: 130 NLVNQGYNALMLSPISDSNLTASVDNAKGKKIPTINVN------DGLIASADYFVGPDAY 183

Query: 135 KIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194
           + GE   + + K++  +G        + I   +   AR RT G    +K        +  
Sbjct: 184 QNGELAAEWVSKQLGDKGDVA-----IVIGMAKAFAARERTAGFKGWIKDNN-SGLNVVA 237

Query: 195 VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGI 254
                 D   A + A++ + Q+P++K   I   ND   LG V A E       DI+ +G+
Sbjct: 238 EQNADWDRQKAKELASTWIQQNPDLK--AIFCNNDDMALGVVEAVEEA---KKDILVVGV 292

Query: 255 NGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314
           +G+         +A     ++          ++E+    +A    P      T   LI +
Sbjct: 293 DGI--GEAYDSIRAGKLDATVDSFGYYMSQVATEVTLRVLAGQDIP--RVTHTPQALIDK 348

Query: 315 DNFKEELE 322
            N  ++ +
Sbjct: 349 TNVDKDAK 356


>UniRef50_Q7CTE3 ABC transporter, substrate binding protein (Ribose) n=1
           Tax=Agrobacterium tumefaciens str. C58
           RepID=Q7CTE3_AGRT5
          Length = 309

 Score =  198 bits (504), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 57/316 (18%), Positives = 114/316 (36%), Gaps = 14/316 (4%)

Query: 6   KALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVP- 64
           K     G+AA+++ +  AE   + ++       +     K  D   K+LG EV+ ++   
Sbjct: 3   KKTLFAGVAALIASAGFAEAKTVCYVTAADSHAYVTPANKAIDARAKELGVEVLSLSQNF 62

Query: 65  DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124
           D +  +  I++  A  A G ++   DP+     +AKA+   + V  ++            
Sbjct: 63  DVQTGVQQINTCIARKAAGIILWPLDPQAYIPGLAKAKAAGIPVNLINSPMN--DAAKPF 120

Query: 125 TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA 184
                       GE   + L K +  +G     S V+        T   R  G    LKA
Sbjct: 121 VTSFTGPDVYSEGEMAAEALQKALDGKG-----SIVIIAGQAGNGTTIGRVDGFNAKLKA 175

Query: 185 AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF 244
            G    ++        D   A  A+  ++ +  + K   +   +D+   G + A +    
Sbjct: 176 LGSK-IEVLDTVNADFDQQKALVASRDLITRFGD-KIAGVYANDDTMARGFIDAWKEAKS 233

Query: 245 KAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFT 304
             A    +GING          +    Y +++ SP   G  +   + + +       +  
Sbjct: 234 GKATPPIVGINGQKD--AFESIRNGEMYATIVQSPIEDGLLAINAMADVLNGKKIDAR-- 289

Query: 305 EVTDVVLITRDNFKEE 320
               + ++T+ N ++E
Sbjct: 290 LPIPLTVVTKANVEKE 305


>UniRef50_C4FY38 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271
           RepID=C4FY38_9FIRM
          Length = 339

 Score =  198 bits (503), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 62/331 (18%), Positives = 113/331 (34%), Gaps = 23/331 (6%)

Query: 1   MHK-------FTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKD 53
           M K       F     A+  +      A  +N+K+G    + ++ +  +     +K  K+
Sbjct: 1   MKKVITWCAIFCLFCLALVPSLSPKVQAEDKNIKIGVAFYKYDDAYMSSVRVALEKIAKE 60

Query: 54  L-GFEVIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAV 111
               E+I   +  D  K  + ID +   G    +I   D     A+V KA+  ++ ++  
Sbjct: 61  HSNVELIVNDSQNDQAKQNDQIDVMIQKGVDVLLINVVDTGAAEAVVQKAKDANIPLVLF 120

Query: 112 DDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQ-----KRGWDVKESAVMAITAN 166
           + +      K  D    V   A + G  QG+ + +  +      R  + K   VM I   
Sbjct: 121 NREPATDVVKAYDKARFVGTTAKEAGIIQGKMIAELWKSDKKYDRNGNGKLDYVMLIGDP 180

Query: 167 ELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVG 226
           E   A  RT  ++D L  A   E         + D   A  A ++ L +  +    +I+ 
Sbjct: 181 ENPEAIARTKYAVDTLTEAKI-EVNKLGDQVANWDPDKAKTATDAWLAKDAD-NIDVIIS 238

Query: 227 MNDSTVLGGVRATEGQG-----FKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDV 281
            NDS   G + A +G G          I   G++  +   +L         G++    + 
Sbjct: 239 NNDSMASGAIAALQGAGFNTDAKADKKIPVFGVDATEEAVDLIA--RGIMTGTVKQDAEG 296

Query: 282 HGYKSSEMLYNWVAKDVEPPKFTEVTDVVLI 312
                  + YN               D   +
Sbjct: 297 MAKAVFALSYNAGQGKDFLDGTDYKYDDTQV 327


>UniRef50_B5GKD2 D-ribose ABC transporter permease protein n=1 Tax=Streptomyces sp.
           SPB74 RepID=B5GKD2_9ACTO
          Length = 432

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 58/312 (18%), Positives = 107/312 (34%), Gaps = 18/312 (5%)

Query: 15  AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAI 73
              S      +  +G        P+F    K      K  G EV+   A  D  K  + +
Sbjct: 136 GAASGGKGDGDYTVGMANFTLSGPYFVGMDKAVKARAKKKGVEVVSTDAGGDAAKLASNV 195

Query: 74  DSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAA 133
           + L +      +I     +   A++   +      I VD +F +           +    
Sbjct: 196 EDLLSKNVDAVIISGGPLESAPAVLNALKSAGKPAILVDRKFRSGT-----YASWIGPDN 250

Query: 134 TKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIY 193
             IG + G+ L  ++ K        A++     +      RTTG   AL AAG    +  
Sbjct: 251 EAIGRQDGEFLAAKLGK----DATVALIKGGPADNSIGLARTTGVKKALDAAGIRMVE-- 304

Query: 194 QVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIG 253
                +    G      S+L  H ++    +   ND+  LG  RA +  G +  +I+  G
Sbjct: 305 GPDYGNWASDGGLTVMESLLASHKDLD--AVFCENDAMCLGAQRAVKDAGRE-KEIVLAG 361

Query: 254 INGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLIT 313
           ++G     +   A    +  + L   D  G    +   + +      P+   V D   +T
Sbjct: 362 VDGQAEALQAIAA-GGNYLVTGLNDADQIGSLGLDRAVDILDGKK--PEKDTVVDSPQVT 418

Query: 314 RDNFKEELEKKG 325
           ++N  +  + +G
Sbjct: 419 KENAAKYQDMEG 430


>UniRef50_C9LY79 Periplasmic ribose-binding protein n=1 Tax=Selenomonas sputigena
           ATCC 35185 RepID=C9LY79_9FIRM
          Length = 342

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 50/299 (16%), Positives = 95/299 (31%), Gaps = 14/299 (4%)

Query: 15  AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAI 73
                 +    + +G+     +  W         +A +D G E+    A    E  + AI
Sbjct: 31  GSAEPGSGNRKITMGYSQIGAQSTWRAAHTASIKQAAEDAGIELQFSNAELKQENQIRAI 90

Query: 74  DSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAA 133
            S  A                  ++ +A+   + VI VD             +  +   +
Sbjct: 91  RSFIAQKVDIIAFSPIVATGWDEVLKEAKAAKIPVIIVDRDLQTND--DSLYIMRIGTDS 148

Query: 134 TKIGERQGQELYKEMQKRGWDVKESA----VMAITANELDTARRRTT-GSMDALKAAGFP 188
            + G    + L   MQ++G   ++      +  I      +   R   G  DA+ A+   
Sbjct: 149 VREGREAFRWLDGYMQEKGKKPRDGGAKFNIAEIKGPAGSSVVERRDTGFRDAMTASPNK 208

Query: 189 E-KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA 247
           +  +I      +    G       ML  + + K  ++   ND   LG + A E  G K  
Sbjct: 209 DAYEILVAQNSTFQKDGGKQVMTEMLKNYKD-KIDILFAQNDDMALGAIEAIEAAGLKPG 267

Query: 248 -DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTE 305
            DI+ +  +G  A+             ++  +P + G    EM    +A +        
Sbjct: 268 QDIVIVSCDGTRAI--FQAMIDGKSNCTVEGNP-LQGPLLMEMAKKVLAGEKVERTVFV 323


>UniRef50_A9BGQ4 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Petrotoga mobilis SJ95 RepID=A9BGQ4_PETMO
          Length = 342

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 49/309 (15%), Positives = 109/309 (35%), Gaps = 17/309 (5%)

Query: 22  MAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKI---AVPDGEKTLNAIDSLAA 78
            + ++ + F+VK  E  ++Q     A KA    G E I     +  +  + ++ +++  +
Sbjct: 40  QSSDMTIFFIVKASENEFWQIVLDGAQKAANHFGVEFIHQEATSESEVSRQVSILETAIS 99

Query: 79  SGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGE 138
           +     V+           + +A    + VI +D           + V  +      IG+
Sbjct: 100 TNPDAIVLAPTVADALVPGIERAMDSGIPVIIIDSMANTD-----NYVSFLGSDNYTIGQ 154

Query: 139 RQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTK 198
           R   EL K ++++              + + +   R +G +D ++ A +P+ ++  V   
Sbjct: 155 RSADELAKALEEKNGSPSGKVAAITYMSGVGSLEARISGFLDRIEEA-YPDIEVVSVRDA 213

Query: 199 SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVD 258
              +    +    +L  +P++        N  T    VRA + QG    D+  + ++   
Sbjct: 214 MGQVGNTINITLDLLTAYPDLDGL--YANNQMTGDDMVRALDMQGRN--DLAAVAVDAS- 268

Query: 259 AVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318
              E+   +       L+  P V GY               P      T +++IT ++  
Sbjct: 269 -AQEIWGLENGYLDSVLVQQPWVMGYAGVAYAVMARNG--VPLAKNVDTGILVITPESLA 325

Query: 319 EELEKKGLG 327
                  + 
Sbjct: 326 SGEADAAIN 334


>UniRef50_B2JP41 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Burkholderia RepID=B2JP41_BURP8
          Length = 322

 Score =  197 bits (502), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 53/299 (17%), Positives = 97/299 (32%), Gaps = 12/299 (4%)

Query: 9   AAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGE 67
           AA+ +AA ++  A  + + LGF     E  W          + KD G  +    A    E
Sbjct: 15  AALTVAASVNSFAGDKQITLGFSQVGAESAWRTANTVSVKTSAKDAGINLKFSDAQQKQE 74

Query: 68  KTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVP 127
             + AI S  A                  ++ +A+   + VI  D             V 
Sbjct: 75  NQIKAIRSFIAQKVDVIAFSPVVESGWEPVLTEAKNAKIPVILTDRSIDVKD--TSLYVT 132

Query: 128 LVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGF 187
           ++     + G R G+ L +    +      +            A  R  G M+ +K    
Sbjct: 133 MIGSDFLEEGRRAGRWLEERY--KNEAGPINIAELQGTVGSAPANDRHAGLMEVIKND-- 188

Query: 188 PEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA 247
           P+ +I    +    + G      +    + + +  ++   ND   LG ++A E  G K  
Sbjct: 189 PKFKIIASQSGDFTLAGGKQVMEAFAKTYGK-QINVVYAHNDDMALGAIQAMEEAGIKPG 247

Query: 248 -DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTE 305
            D+  +  +      E     A      +  SP + G +    + + VA    P +   
Sbjct: 248 KDVSVVSFDATKGGFEAM--IAGKINVDVECSP-LLGPQLMTAVKDVVAGKQLPKRIVT 303


>UniRef50_A8RTB0 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8RTB0_9CLOT
          Length = 358

 Score =  197 bits (501), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 48/298 (16%), Positives = 94/298 (31%), Gaps = 16/298 (5%)

Query: 26  LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDSLAASGAKGF 84
            K+GF     +  W   +     K  +  G+E +   A  D  K ++ ++ L        
Sbjct: 71  FKVGFSELAIDGAWRVAQVDSMQKEAESRGYEFVMSNAELDTAKQISDVEDLLTQDLDFL 130

Query: 85  VICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQEL 144
            I   D +     +  A+   +  I +D +     G  +D +  ++      GE     L
Sbjct: 131 FIAPIDMEAIMPAIEAAKAKGVPTILLDREANGTPG--VDYICTILSNYIWQGEACADWL 188

Query: 145 YKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPG 204
            +     G       V           R R  G    +K   +   +I    +       
Sbjct: 189 SE----NGGADSYKIVQITGKVGGSDVRDRQAGFETGVKK--YENMEIVATQSGEWSRTE 242

Query: 205 AFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA-DIIGIGINGVDAVSEL 263
           A     +++         ++   ND   LG V A +  G     D+  I I+G     E 
Sbjct: 243 AQKVMQNIIQSTGG-DFNVVYCHNDEMALGVVLALKAAGMNPGTDVKVIAIDGQAEAVEA 301

Query: 264 SKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEEL 321
               A         +P   G  + + +  ++ ++    +     +  +I   N +E+L
Sbjct: 302 I--IAGEMNCIATCNPR-FGPVAFDTMEKYLNEEKL--EHIINNEEYIIDSTNAEEKL 354


>UniRef50_B0P6G6 Putative uncharacterized protein n=2 Tax=Bacteria
           RepID=B0P6G6_9FIRM
          Length = 355

 Score =  197 bits (501), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 52/338 (15%), Positives = 100/338 (29%), Gaps = 29/338 (8%)

Query: 8   LAAIGLAAVM---SQSAMAENLKLGFLVKQPEEPWFQ----TEWKFADKAGKDLGFEV-- 58
              +  +      S+S   + +++G  + +  + +           A         ++  
Sbjct: 22  CCLLLPSGCADKPSESMTPDPIRIGVTLYRQSDTFISLLASDLLDCAKARETQDNVKITL 81

Query: 59  -IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117
            I     +       +D   A G     +   D    S I+ KAR  D+ VI  + + V 
Sbjct: 82  NILDGTGNQGTQNEQVDRFLAQGYDAICVNEVDRTAASVIIDKARAADIPVIFFNREPVG 141

Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQK------RGWDVKESAVMAITANELDTA 171
              +    V  V     + G+ QG+ +     +      R  D +   V+         A
Sbjct: 142 EDMQRWQNVYYVGSDPREAGDMQGRIVVDLYDENPASVDRNGDGRIQYVILEGEPGHQDA 201

Query: 172 RRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEV--KHWLIVGMND 229
             RT   + AL +AG  + +       +     A       L    E+  +  +I   ND
Sbjct: 202 TLRTESCIAALTSAGI-DVEKLASEPANWQRAQASAKMAQWL-ADEELRDRIEVIFCNND 259

Query: 230 STVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEM 289
              LG + A          +  +GI+       L   Q     G++            ++
Sbjct: 260 DMALGAIDAYHAAEISELPV-IVGIDAT--PPALMAIQDGSLAGTVRNDAQGQAQAIFDL 316

Query: 290 LYNWVAK----DVEP--PKFTEVTDVVLITRDNFKEEL 321
            Y         +  P            ++T  N  +E 
Sbjct: 317 AYALSTGANPQEAVPMLEGQYVWAPHSIVTIGNVMQEY 354


>UniRef50_UPI0001C31742 periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31742
          Length = 356

 Score =  197 bits (501), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 54/303 (17%), Positives = 103/303 (33%), Gaps = 21/303 (6%)

Query: 23  AENLKLGFLVKQPEEPWFQTEWKFADKAGKDL--GFEVIKIAVPD--GEKTLNAIDSLAA 78
                +G+ V      W     +    A +      E +     D   +K ++ + S+ +
Sbjct: 44  GGKFTIGYDVYWLGNSWSTQLAEEFRAAAERNRDSIEKVVYTQSDNQVQKQISNVQSMIS 103

Query: 79  SGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGE 138
                 ++    P     ++ +A    + VI V       +    DT   V       G 
Sbjct: 104 RRVDAIIMTPISPSASVPVIQQANRAGIPVILV-----AGQADTRDTAAEVRADDIVFGR 158

Query: 139 RQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTK 198
              + L +E+  RG     + +         T   R  G+ D      +P+ ++      
Sbjct: 159 TGAEWLVRELGGRGKIYVLNGL-----PGFSTDTLRWKGAKDVFDR--YPDIEVVADAHA 211

Query: 199 SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVD 258
           + D   A  A ++ML  HPEV    +     +  LG ++A    G     + G   NG+ 
Sbjct: 212 AWDTARAKTAVSNMLAAHPEVDG--VWSQGGAMTLGAIQAFRAAGKPLVPMTGENNNGLM 269

Query: 259 AVSE-LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNF 317
            V + L++A    F    + +P   G ++     N +  D    +   + +   IT DN 
Sbjct: 270 KVWDSLNRAGDRRFDSIGVVNPTWVGSEALTQTLNLLRGDEV--RKVNLVNPAPITSDNL 327

Query: 318 KEE 320
            + 
Sbjct: 328 ADY 330


>UniRef50_B5ZNU3 Periplasmic binding protein/LacI transcriptional regulator n=14
           Tax=Rhizobiales RepID=B5ZNU3_RHILW
          Length = 329

 Score =  197 bits (501), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 54/331 (16%), Positives = 106/331 (32%), Gaps = 17/331 (5%)

Query: 2   HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGF---EV 58
             FT    A  +A  M  ++ A ++ +  +VK     ++Q     A KAGKDLG    E+
Sbjct: 11  RAFTALAGAAVIATAMPVTSFAADVTIPIIVKDTTSFYWQIVLAGARKAGKDLGVNVPEL 70

Query: 59  IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
              A  D    ++ +++  A      VI   + K     + +A    + +I +D      
Sbjct: 71  GAQAESDINGQISILENAVAGKPAAVVISPTEFKALGKPIDEAAKS-VPIIGIDS----- 124

Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
                     +     + G      L   +++     +   V+      + +  +R  G 
Sbjct: 125 GADSKAFKSFLTTDNVQGGRIAADGLAAAIKEMTGKEEGEIVILTNLPGVGSLEQRREGF 184

Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238
           +D +K    P  ++              +    ++  +P++    +   N     G  +A
Sbjct: 185 LDQIKT-KHPGLKVIADKYGDGQATTGLNMMTDLITANPKLVG--VFASNLILAQGVGQA 241

Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
              +      I  IG +  D      K       G ++  P   GY   +        + 
Sbjct: 242 I-AENKLGDKIKVIGFDSDDKTVGFLK--DGAIAGLVVQDPYRMGYDGIKTALAVSKGEK 298

Query: 299 EPPKFTEVTDVVLITRDNFKEELEKKGLGGK 329
                   T   L+T+ N  +      L  K
Sbjct: 299 VEANVD--TGANLVTKANMADPKIDALLNPK 327


>UniRef50_A9AWB1 Periplasmic binding protein/LacI transcriptional regulator n=5
           Tax=Bacteria RepID=A9AWB1_HERA2
          Length = 333

 Score =  197 bits (501), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 54/321 (16%), Positives = 103/321 (32%), Gaps = 18/321 (5%)

Query: 6   KALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVP 64
             + A+  +++  ++     L +GF     E  W     +        LG E+ +  A  
Sbjct: 27  SGVGAVAPSSLDLKTKTYPELVVGFAQIGAESEWRTANTRSIQDTANQLGVELALSDAQQ 86

Query: 65  DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMD 124
             E  + AI S  A G     +          + A+ +   + +I +D            
Sbjct: 87  QQENQIKAIRSFIAQGVDVIGVSPVVETGWDEVFAEVKQAGIPLILLDRNANVPDDLYSV 146

Query: 125 TVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKA 184
               +     + G R   E+ + +  +G     + V+            R TG  + L+ 
Sbjct: 147 R---IGSDFVEEGRRACGEMARLLDGQG-----AIVVLEGTQGSAPMIGRGTGFQECLQ- 197

Query: 185 AGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGF 244
             +P   I    +         +   ++L +H       +   ND   LG + A E  G 
Sbjct: 198 -SYPALHIIDSQSGDFIRARGKEEMAALLQKHGN-SIDGVFAQNDDMALGAIEAIEEYGL 255

Query: 245 KAA-DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKF 303
           +   DI  + I+ V A  E           ++  +P + G        N       P + 
Sbjct: 256 RPGVDIKIVSIDAVRAAFEAM--IDGKLNATIECNP-LLGPLFFATALNLANG--IPVEK 310

Query: 304 TEVTDVVLITRDNFKEELEKK 324
               D  +  +D   +EL K+
Sbjct: 311 WIKPDEGIYRQDTAAQELSKR 331


>UniRef50_C0C2G7 Putative uncharacterized protein n=1 Tax=Clostridium hylemonae DSM
           15053 RepID=C0C2G7_9CLOT
          Length = 356

 Score =  197 bits (501), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 46/304 (15%), Positives = 98/304 (32%), Gaps = 12/304 (3%)

Query: 20  SAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEVI-KIAVPDGEKTLNAIDSLA 77
           S   + + +G  +      +    +     A K+    E I +    D    +N I++  
Sbjct: 56  SGNKDKITVGATLSDFTISFQAAMYNELLDAQKEYDNIEFILQDGASDSALQVNQIETFI 115

Query: 78  ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137
             G    +I           + KA    + V AV+    +           +    T  G
Sbjct: 116 TQGVDAILINAV-SDAVEPSLKKAMEAGIPVFAVNRSITDENA----YSYFIGANDTLSG 170

Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFP-EKQIYQVP 196
           E+    L   + ++      + +             R  G    +   G+     I +  
Sbjct: 171 EQMANCLLDMI-EKDQMDSCNILYIQGVIGATYQTLRQGGFDSIMDEKGYDMGVNILERI 229

Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256
              +D      +  +ML ++P  +   IV       +G ++A +  G        +G++ 
Sbjct: 230 PCKHDKETVISSIQNMLNKYPAGEIDAIVCEGPDDAVGALQAVQSAGRTELVGKIVGMDM 289

Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP-PKFTEVTDVVLITRD 315
              V +  KA     YG++L  P        + +  +   D +   +    TD+ ++T +
Sbjct: 290 PTEVWDAIKA--GKIYGTVLQDPAEQCEVGIKTIETYFFGDKDSLKEKFIETDLPMVTSE 347

Query: 316 NFKE 319
           N  +
Sbjct: 348 NVND 351


>UniRef50_A7V0S7 Sensor protein n=6 Tax=Bacteroides RepID=A7V0S7_BACUN
          Length = 919

 Score =  196 bits (500), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 57/318 (17%), Positives = 119/318 (37%), Gaps = 28/318 (8%)

Query: 4   FTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAG---KDLGFEVIK 60
           F   +      A   + A     ++G      E+ W +       +     +D+  + I+
Sbjct: 10  FFLLVLWGVAVACSRREA---RFRIGVSQCS-EDEWRRQMNSEILREAHFYEDVEVD-IR 64

Query: 61  IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120
            AV D ++    I  L A G    ++   +    + +V +A    + VI VD + ++ K 
Sbjct: 65  TAVDDNDRQAKDIRELIAEGVDLLIVAPNEATPITPVVEEAYNRGIPVIVVDRKILSDK- 123

Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180
                   V     +IG+  G+ +   +  +G  V+ S ++         A  R  G + 
Sbjct: 124 ----YTAYVGADNYEIGKAVGEYVANVLHGQGDVVEISGLV-----GSTPAVDRHQGFVK 174

Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240
           A+ A  +P  ++  V   +     A +  +++L + P +   L+   ND    G   A  
Sbjct: 175 AISA--YPGIRLLAVEDGAWLQLKAGEKMDTLLSRFPHID--LVYAQNDRMAAGAYAAAA 230

Query: 241 GQGFKAADIIGIGINGVDAVS-ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
            +G +  D+  IGI+ +      + K  A     + +      G +  ++  + + K   
Sbjct: 231 REGRE-KDMRFIGIDALSGKDYGVEKVLAGELDATFIYP--TGGDRVMQIAMDILNKRDF 287

Query: 300 PPKFTEVTDVVLITRDNF 317
           P +   +    ++ RDN 
Sbjct: 288 PRE--TILGTSVVDRDNA 303


>UniRef50_A8SGU5 Putative uncharacterized protein n=1 Tax=Faecalibacterium
           prausnitzii M21/2 RepID=A8SGU5_9FIRM
          Length = 356

 Score =  196 bits (500), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 55/302 (18%), Positives = 106/302 (35%), Gaps = 11/302 (3%)

Query: 28  LGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVI 86
           +G  + Q  + +        +   KD+G+ V I     D       I++    G    VI
Sbjct: 61  IGVCIYQFADNFMTLYRADLEGYLKDMGYSVTIMDGKNDQNTQTEQINTFLQQGVDVLVI 120

Query: 87  CTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTV-PLVMMAATKIGERQGQELY 145
                     IV         ++ ++ +   +           V   A + G  QG+ + 
Sbjct: 121 NPVQTTSAQTIVDTVSPSGTPIVFINREPEESVLDSYKGKCCYVGADARQSGTYQGELIL 180

Query: 146 --KEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIP 203
             +       D K + +M     E   A+ RT  S+ AL  A   E +       + D  
Sbjct: 181 ETETQGDINGDGKITYIMCKGDPENIDAQYRTEYSIKALTDAN-KEVECLYEYLDNWDQT 239

Query: 204 GAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFK-AADIIGIGINGVDAVSE 262
            A     + L Q+ + K  ++   ND+  LG +++ +  G     D+  +G++ +  V  
Sbjct: 240 TAQQDVANALSQYGD-KIEVVFCNNDAMALGALQSIQQAGRTVGKDVYLVGVDAL--VEA 296

Query: 263 LSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELE 322
           +         G++L        K++E    +V             D V +T+DN  + L+
Sbjct: 297 VQNVVDGNMTGTVLNDDVGQATKAAEATKLFVEGKDVEK--YYWVDYVKVTKDNASQYLK 354

Query: 323 KK 324
           + 
Sbjct: 355 ED 356


>UniRef50_Q0BAE1 Periplasmic binding protein/LacI transcriptional regulator n=3
           Tax=Burkholderia RepID=Q0BAE1_BURCM
          Length = 321

 Score =  196 bits (500), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 50/327 (15%), Positives = 108/327 (33%), Gaps = 12/327 (3%)

Query: 1   MHKFTKALAAIGL--AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV 58
           + K   +  A+G    A+ + +  A    +  L+      ++    K   K     G +V
Sbjct: 3   LRKSILSCLALGTISGALSTGADAANQPHVALLMPTQSVEYWALYIKGFQKEAAADGLKV 62

Query: 59  -IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117
            +K+   D  +    ++   A      V+   D       + K     + ++  +     
Sbjct: 63  DVKVTNYDANEQATQVEQTLAQKPDVIVLVPVDSSAMVPSIRKIDQARIPLVISNSMP-- 120

Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177
            +                 GE   + + +  +++G+  K   ++           +R  G
Sbjct: 121 DQKYSRYWKVFTGPNDISNGEAAAKAMIQGFKEKGYGDKGKVIVINGPMGTPPQVQRYQG 180

Query: 178 SMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVR 237
            +D LK    P  ++        D   A  AA+++  Q  +VK   +   NDS + G V 
Sbjct: 181 FVDGLKKNA-PGIEVVGAQPADWDAVKAEAAASALFTQFKDVKG--VYTENDSQLRGVVT 237

Query: 238 ATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKD 297
           A +  G + + ++ +G        E   A     Y ++  SP   G  +++         
Sbjct: 238 AAQRLGLEPSKLVIVGHGCDAGGVEAISA--GKAYATVEQSPFDDGAYAAKAALELATGK 295

Query: 298 VEPPKFTEVTDVVLITRDNFKEELEKK 324
              P+  +     + T+        +K
Sbjct: 296 T--PRAVQYLPNPIATKATTNVCYSQK 320


>UniRef50_A9HN30 Periplasmic binding protein/LacI transcriptional regulator n=4
           Tax=Alphaproteobacteria RepID=A9HN30_GLUDA
          Length = 335

 Score =  196 bits (500), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 45/307 (14%), Positives = 89/307 (28%), Gaps = 20/307 (6%)

Query: 20  SAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG--FEVIKIAVPDGEKTLNAIDSLA 77
               ++  +GF     +EP+         +  K+      VI     +    ++ +++  
Sbjct: 44  CGPNKSYVIGFSQANFKEPYRAHVDHELQRLVKNYPQFKLVIADGQANDNTQVSQVENFL 103

Query: 78  ASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIG 137
                   +   +    +  V+      + VI +D +    K         V      I 
Sbjct: 104 TQQVDILFVSAFEAAPLTPAVSAVYDKGIPVIELDRRTTGEK-----FTSFVSGDNRAIA 158

Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT 197
              G      +   G        +         A  R  G    +     P+ +I  V  
Sbjct: 159 HEAGLYAASLLPDGGDVA-----ILEGLPSSSPAIERLEGFKAGISTN--PKVKIIAVQP 211

Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV 257
                  A +  ++ML  HP++K  L+   ND    G   A +  G K   +  IG +G+
Sbjct: 212 VDWMQDKAVEVFSAMLQAHPDIK--LVYTSNDLAAAGAYIAVKQAG-KLGQVKIIGTDGL 268

Query: 258 DAVSELSKAQ-ATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316
              S   +A     +  + +        ++ ++    +                 I   N
Sbjct: 269 PGPSGGIRAVAEGQWTATYVYP--TGAAEALDLAKKILIDCASSVPRLVTVPTQRIDASN 326

Query: 317 FKEELEK 323
            KE   K
Sbjct: 327 AKELYAK 333


>UniRef50_A5V1R8 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Roseiflexus RepID=A5V1R8_ROSS1
          Length = 334

 Score =  196 bits (500), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 47/324 (14%), Positives = 102/324 (31%), Gaps = 16/324 (4%)

Query: 5   TKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDL-GFEVIK-IA 62
             A      +   +        ++G       EPW Q        A       E+    A
Sbjct: 21  LAACTQPTSSPGGAGGDAPRRWRIGMSQANNAEPWHQAMNAQIAAAAARHPNIEIEFTDA 80

Query: 63  VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKP 122
             +  + +  +++  + G    +I   +    + IVA A    + VI +D +    +   
Sbjct: 81  RQNNAQQIADVEAFLSKGIDLLIISPNEASPLTPIVASAFQRGIPVIVLDRKVKGEQ--- 137

Query: 123 MDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDAL 182
                 +      IG + G+   +  +++      + +           + R  G  + +
Sbjct: 138 --YTMWIGADNRLIGRKAGEYTARWCREQ-QRSPCTVIELRGLEGSTPTQERGDGFREGI 194

Query: 183 KAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQ 242
            A   P+ +I            A   A  +   +P+V   ++   ND   +      + Q
Sbjct: 195 AAN--PDVRIIASQNADWLAERADALARVLFEANPDVD--VVYAHNDPMGIAAFNVAKEQ 250

Query: 243 GFKAADIIGIGINGVDAVS-ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301
           G     I+ IGI+ +      +   +      + +      G ++ E     + +   PP
Sbjct: 251 GRDTDAILFIGIDALATSDGGIQAVRQGKLNVTYVYP--TGGAEAIEWALRILEQRETPP 308

Query: 302 KFTEVTDVVLITRDNFKEELEKKG 325
           +   + D   +T  N     +K G
Sbjct: 309 REIIL-DTEEVTTANADAMFQKYG 331


>UniRef50_C8S5N2 Monosaccharide-transporting ATPase n=1 Tax=Rhodobacter sp. SW2
           RepID=C8S5N2_9RHOB
          Length = 349

 Score =  196 bits (500), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 56/304 (18%), Positives = 104/304 (34%), Gaps = 23/304 (7%)

Query: 20  SAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAI---DSL 76
              A   K+G + K     ++++  +        LG E +  A       L  +   ++L
Sbjct: 51  PVPAAGTKVGGVSKTLTNEYWRSLGEGYANVATKLGIEFVYQAAQSEGDQLGQLAIAENL 110

Query: 77  AASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKI 136
            + G    +            V  A    + V+ V+D  + +          V       
Sbjct: 111 ISQGFNALLFSPQTDANLIPAVEAATAAGVPVLNVNDAVIPSAAN------YVGNVQKGN 164

Query: 137 GERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVP 196
           G              G        +      +  A +RT G  + + A G  + ++    
Sbjct: 165 GVNVANWFIANRPDGGKVA-----VIEGQPGVYAAGQRTAGFTETITAGG--KFEVVASV 217

Query: 197 TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGING 256
             +     AF+AA+++L Q+P++  +     ND   LG V A +  G KA  +   G +G
Sbjct: 218 PANWSREEAFNAASTILQQYPDLIGF--YANNDGMALGVVEAVKAAG-KAEQVAVFGTDG 274

Query: 257 VDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDN 316
           +       +A      G++   P + G  + E+    +A    P      T   LIT+DN
Sbjct: 275 ISDAYAAVRA--GDLTGTVDSFPVLTGEIAMEVALRLMAGQDLP--RVVATPQALITKDN 330

Query: 317 FKEE 320
            +  
Sbjct: 331 VETY 334


>UniRef50_A7II12 Periplasmic binding protein/LacI transcriptional regulator n=42
           Tax=Bacteria RepID=A7II12_XANP2
          Length = 347

 Score =  196 bits (499), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 57/328 (17%), Positives = 111/328 (33%), Gaps = 25/328 (7%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           M            +   +    A+   +G ++K    P+F    + A+ A   LG E+  
Sbjct: 9   MAASVAWAGLAATSPAGAAEKPADKPIVGIVIKTSTNPFFVKMKEGAEAAAARLGLELRS 68

Query: 61  IAV---PDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117
            A     D +  + A++SL A+GAKG +I   D +    ++ +AR   + VIA+D     
Sbjct: 69  FAGKMDGDTDAQVTAVESLIAAGAKGILITPSDSRAIVPVLEQARAKGILVIALDTPLD- 127

Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTG 177
               P              G+  G+   K +       K  A++ +  N++     R  G
Sbjct: 128 ---PPGAADATFATDNVLAGKLVGEWAAKTLGANAKSAK-VALLDLNVNQISVDVDRDQG 183

Query: 178 SMDALKAA--------GFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMND 229
            +                 + +I        +  G   A  ++L + P V   ++  +N+
Sbjct: 184 FLKGFGVNVADPAVIGDEKDSRIVGHDVTLGNEEGGRRAMENLLQRDPYV--SVVYAINE 241

Query: 230 STVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEM 289
               G   A    G    D++ + ++G      +   +      + +  P        E 
Sbjct: 242 PAAAGAYEALRSIGRD-KDVLVVAVDG--GCPGVRNVKDGVIAATAMQFPLAMAQMGVEA 298

Query: 290 LYNWVAKDVEPPK----FTEVTDVVLIT 313
           +  +     +P          T V L+T
Sbjct: 299 VLKYATDGTKPKPADGQDFVNTGVELVT 326


>UniRef50_C0VSF4 D-ribose ABC superfamily ATP binding cassette transporter, binding
           protein n=2 Tax=Corynebacterium glucuronolyticum
           RepID=C0VSF4_9CORY
          Length = 306

 Score =  196 bits (499), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 60/327 (18%), Positives = 109/327 (33%), Gaps = 30/327 (9%)

Query: 1   MHKFTKALAA--IGLAAVMSQS---AMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLG 55
           + K    L A  + L+           A +  +   +   + P+F      A     +LG
Sbjct: 2   LRKSLVLLTAGILTLSGCSGTPRDVPAAGSRAVTLALSTEKNPFFLQVRYGAQAKANELG 61

Query: 56  FEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQ 114
            ++ +  A  D E     +D   +SG    V+   D +  +  V++     +  I VD  
Sbjct: 62  IDLTVLDAGDDAEVQAAQLDD-VSSGVA--VVNPADSEALAPAVSQLNEKGIPAITVDRT 118

Query: 115 FVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRR 174
              A         L+    T+ G      L K ++ +G       ++        ++  R
Sbjct: 119 ITGAD-----VAALIDSNNTEGGAAAASVLAKAIRAQGE-----VIVLRGIEGSSSSAER 168

Query: 175 TTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLG 234
             G   A+  A  P  +I        D   A D    +L  HP+V    I   ND   LG
Sbjct: 169 YEGFTQAM--AEHPRVRIVAAEAADFDRDTARDLVTDLLADHPDVAG--IFAENDEMALG 224

Query: 235 GVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWV 294
            V A         D+  +G +G +    +   +      ++       G  + E     +
Sbjct: 225 AVDALGE--RAGKDVKVVGFDGTE--EGVRAVKNRKLVATIAQQSSELGATAIEQAGKLL 280

Query: 295 AKDVEPPKFTEVTDVVLITRDNFKEEL 321
             +         T V+++TRDN ++  
Sbjct: 281 DGEAAES---VHTPVMVVTRDNIEKYR 304


>UniRef50_A9AWB0 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Herpetosiphon aurantiacus ATCC 23779
           RepID=A9AWB0_HERA2
          Length = 332

 Score =  196 bits (499), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 56/338 (16%), Positives = 103/338 (30%), Gaps = 33/338 (9%)

Query: 3   KFTKALAAIGLAAVMSQSA-------------MAENLKLGFLVKQPEEPWFQTEWKFADK 49
           +    L  +GLA   + SA                ++ L +     E  W         +
Sbjct: 10  RLMALLVIVGLAGCGASSAPTTAPDAPATGAKTYSDMVLCYPQLGAESDWRTANTASIKE 69

Query: 50  AGKDLGFE--VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMK 107
               LG +  V   A    E  ++A+ +    G     +         A++ +A+   + 
Sbjct: 70  TAATLGIKQLVFSDAQQKQENQISAVRACIQQGVDVIALPPVVEDGWDAVLTEAKNAGIP 129

Query: 108 VIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANE 167
           VI VD      K         +       GER   E  K M   G     + +       
Sbjct: 130 VIIVDRSVSADKSLYS---THIGSNMVLEGERAAAEFNKMMPNGG-----AILELSGTTG 181

Query: 168 LDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQH-PEVKHWLIVG 226
              A  R  G  + L +       I    T +     A     ++L ++ P      I  
Sbjct: 182 SGAAVGRAKGLRNKLNS----NITIIDSQTGNFTRAEAVPVMQALLKKYTPGTDFQGIFI 237

Query: 227 MNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKS 286
            ND   +G +   +  G K  D+  + ++G              F   +  +P + G + 
Sbjct: 238 HNDDMGIGVIEVLKAAGIKPGDLKIVSVDGTRG--GFQAMVDGWFQADVECNP-LLGPQV 294

Query: 287 SEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEKK 324
            E+    +      P+   +T+  +   +N  E L  +
Sbjct: 295 FELALKLMNGQPVEPEV--ITNETVYYPENAAELLPTR 330


>UniRef50_Q0SII4 ABC ribose transporter, substrate-binding component n=1
           Tax=Rhodococcus jostii RHA1 RepID=Q0SII4_RHOSR
          Length = 322

 Score =  195 bits (497), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 53/319 (16%), Positives = 104/319 (32%), Gaps = 26/319 (8%)

Query: 5   TKALAAIGLAAVMSQSAMAEN--LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKI 61
           T  +AA  + A  S +   ++    +G  +     P+F  E +  + A  +   EV ++ 
Sbjct: 23  TALIAAGTMTACTSGTGAGDDGTTTIGVTLNAASNPFFLAEGQAIETAAAEKRVEVSVQY 82

Query: 62  AVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGK 121
           A  D     + ID+         ++   D       + +A   ++ V+AVD   + A   
Sbjct: 83  ANADVAVQSDQIDTFIRQKVDSIIVDAVDSDGIGPALLRATQANIPVVAVDVTAIGAD-- 140

Query: 122 PMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDA 181
                  V     + G      L +++   G       V  +    +     R  G  +A
Sbjct: 141 -----ATVTSDNVQAGREACTYLVEQLGGSGK------VAIVDGAAVSAISDRMQGCREA 189

Query: 182 LKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEG 241
           L A   P  ++            A + A+++L  +P+V  +   G+ND T +G   A + 
Sbjct: 190 LDA--HPGIEVVATQRADLTRDKAMNVASTILTANPDVDGF--FGVNDPTAIGISLAAQQ 245

Query: 242 QGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP 301
           +G     +         A         +    +    P   G    ++       +    
Sbjct: 246 KGVDVKVVG-----VDGAKQLTDLLGKSSIIATSGQDPAQLGRSGLDIAVRLAGGEKV-D 299

Query: 302 KFTEVTDVVLITRDNFKEE 320
               +   VL+T D     
Sbjct: 300 SAPTLIPTVLVTADTITAY 318


>UniRef50_C6CXV0 D-galactose/D-glucose ABC transporter, periplasmic
           D-galactose/D-glucose-binding protein n=15
           Tax=Firmicutes RepID=C6CXV0_PAESJ
          Length = 366

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 51/323 (15%), Positives = 99/323 (30%), Gaps = 20/323 (6%)

Query: 15  AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAVPDGEKTLNAID 74
                 A+ +   +G  + + ++ +        + A + +    I  +        + +D
Sbjct: 48  TAAESPAVKKEPTVGVAIYKFDDTFMTGVRNAIEAASQGVAKVDIVDSQNSQPTQNDKVD 107

Query: 75  SLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAAT 134
                      I   D    S I+ KA+  +  V+  + + +       D V  V   A 
Sbjct: 108 LFITKKYNAMAINAVDRTAASMIIDKAKSANTPVVFFNREPLAEDMNKWDLVYYVGAKAE 167

Query: 135 KIGERQGQELYKEMQ-----KRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPE 189
           + G   G+ +    +      +  D K   +M         A  RT  S+ A+  AG   
Sbjct: 168 ESGTMSGELIIDYWKAHPEMDKNKDGKLQYIMLKGEPGHQDAELRTKYSIQAITDAGI-G 226

Query: 190 KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQG--FKAA 247
            +     T   D   A D   + L  H + K   ++  ND   LG + A +  G      
Sbjct: 227 VEKLAEDTAMWDRVKAQDKMATFLSAHGD-KIEAVLANNDDMALGAIEALKAAGYFKDGK 285

Query: 248 DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV--------- 298
            +  +G++   A   L         G++L      G  + ++       +          
Sbjct: 286 FMPVVGVDATAA--ALQALSEGTLLGTVLNDAKNQGAATLKLAAALANGETPSKVNTGFD 343

Query: 299 EPPKFTEVTDVVLITRDNFKEEL 321
                        IT+DN  +  
Sbjct: 344 ITDSKYVWVPYKKITKDNMSDAQ 366


>UniRef50_A1AYL7 Periplasmic binding protein/LacI transcriptional regulator n=6
           Tax=Proteobacteria RepID=A1AYL7_PARDP
          Length = 348

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 54/300 (18%), Positives = 102/300 (34%), Gaps = 23/300 (7%)

Query: 24  ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---PDGEKTLNAIDSLAASG 80
           E  ++G + K     ++++  +         G  +   A     D    L+  +++   G
Sbjct: 54  EGTQIGGVSKALTNEYWRSLGEGYKNMTDAQGVGLAYQAAPSEGDQLGQLSIAENMILQG 113

Query: 81  AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQ 140
            +G ++           +  A    + V+ V+D  + +          V       G R 
Sbjct: 114 YQGLLVSPQTDNNLQPAMETAASRGIAVVNVNDAVIPS------ATQYVGNVQRDNGVRV 167

Query: 141 GQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSN 200
            Q         G               +  A +RT G    +  AG    Q+      + 
Sbjct: 168 AQWFIDNRPGGGKVA-----AIEGQPGVFAAGQRTDGFTTTITEAG--NFQVVASVPANW 220

Query: 201 DIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAV 260
               A+DAA+++L QHP++  +     ND   LG V A +        +   G +G+   
Sbjct: 221 SREQAYDAASTILQQHPDLIGF--YANNDGMALGVVEAVKAANL-QEQVSVFGTDGI--P 275

Query: 261 SELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEE 320
              +  +A    G++   P + G  + E++   +A    P      T   LIT DN  + 
Sbjct: 276 DAYASIRAGDLTGTVDSFPVLTGEVAMEVVLRLLAGQGIP--RVVATPQALITADNVADY 333


>UniRef50_B5CR03 Putative uncharacterized protein n=1 Tax=Ruminococcus lactaris ATCC
           29176 RepID=B5CR03_9FIRM
          Length = 332

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 53/297 (17%), Positives = 98/297 (32%), Gaps = 20/297 (6%)

Query: 23  AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGA 81
            E    GF       P++ T       A ++ G ++ IK    D E+    I  L     
Sbjct: 47  QEKKVFGFCGIDMSNPFYATLKDSVQSALEEQGDKLLIKDPAGDAERQNTQIQELIEEDV 106

Query: 82  KGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQG 141
               +C  D K     +      D+ VI +D +   +          V       G   G
Sbjct: 107 DAVFLCPVDWKKIEPALDALEEADIPVINLDTKVYESG----KVAAFVGSDNRNAGYVCG 162

Query: 142 QELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSND 201
           ++L +     G       V+ +    +++   R TG  +A+    F   ++ +     ND
Sbjct: 163 EDLVERKPDGGQ------VVIVENLNVNSVCERITGFEEAVSKGAF---EVVKRIQTGND 213

Query: 202 IPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVS 261
           + G       +L Q+P++    I+  +D        A    G     +    ++G  A  
Sbjct: 214 VSGLKQQVAQVLAQNPDLD--AIMCGDDQMAEQVREAITEAG--QEKVYVYSVDGSPASK 269

Query: 262 ELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFK 318
           +       G  G    SP   G K+ ++    +  +    +     +   I RDN +
Sbjct: 270 KALVEHTGGMMGIGAQSPINLGKKAVKIANAVLNGEDYEKE--TYEETFFINRDNVE 324


>UniRef50_C3MI97 Putative solute-binding component of ABC transporter n=1
           Tax=Rhizobium sp. NGR234 RepID=C3MI97_RHISN
          Length = 327

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 47/338 (13%), Positives = 103/338 (30%), Gaps = 33/338 (9%)

Query: 2   HKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADK--AGKDLGFEV- 58
             F  A+AA  +      +A  E +++  L       + +          A K+   E+ 
Sbjct: 5   RTFIAAIAASTMLLGADLAAAQEKIRIAALSFGEAGEYMKAWSTEIQNHPAVKEGKVEIT 64

Query: 59  IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA 118
           +     D     N ID+         ++   D +  +  + KA    + VI         
Sbjct: 65  VFDGKYDPLIQANQIDTALTQQFNAIIMAPFDLEASAPAIDKAAEAKVPVI-----VSAL 119

Query: 119 KGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGS 178
           K    +    +++   + G    +E+ K +   G       V+            R  G 
Sbjct: 120 KTSSKNYTASIIVDDREGGRIIAEEMAKRLPSGGNL-----VLMEGPIGQSAQIERRAGV 174

Query: 179 MDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRA 238
              L+A      ++    + +           + L  +P+ +   ++  ND   LG + A
Sbjct: 175 DAGLEA--HSNLKLLADKSGNWSRAEGQALMENWLSAYPD-QINGVLAENDEMALGAIEA 231

Query: 239 TEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
            +      + +  I I+G+         +      +L       G  + ++    V    
Sbjct: 232 MKAANVDLSKVPVIAIDGIPDAK--RAVENGEMAVTLYKYARAEGQGAVDLALRQVIGTE 289

Query: 299 EPP---------------KFTEVTDVVLITRDNFKEEL 321
             P               +   V   +++ +DN K+ +
Sbjct: 290 YKPQSEVWNGLMEWKDGTQKDYVVPWLILDKDNVKKYM 327


>UniRef50_C5EQH1 D-allose-binding periplasmic protein n=1 Tax=Clostridiales
           bacterium 1_7_47FAA RepID=C5EQH1_9FIRM
          Length = 356

 Score =  195 bits (497), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 54/307 (17%), Positives = 104/307 (33%), Gaps = 22/307 (7%)

Query: 24  ENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK---IAVPDGEKTLNAIDSLAASG 80
            + K   ++K     ++   WK  +      G +V      +  D E  L  ++S    G
Sbjct: 63  SDKKYAVILKTQATDFWVKMWKGVEAETAVKGVKVDLYSAQSEDDLEGQLTILESCIQQG 122

Query: 81  AKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK--GKPMDTVPLVMMAATKIGE 138
             G  I           + +A    + ++ VD++F   +   +    V  V      +G 
Sbjct: 123 YDGIAIAPLSGVNVLPGIGEATAKGITIVDVDEKFDETELANQGGACVAFVATDNVAVGA 182

Query: 139 RQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTK 198
           +  Q +     +          +    +   ++  RT G+  A          I      
Sbjct: 183 KGAQYIVDTAGEGAKVA-----IIEGKSGNQSSEDRTQGAKQAFTDGK---MDIISSQAA 234

Query: 199 SNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVD 258
             D   A D A++++ Q+P++K   I   ND   LG V+A      K  +I+ +G +G  
Sbjct: 235 DWDRQKAMDIASTLIQQNPDLKG--IYCCNDGMALGAVQAVINAN-KLGEIMIVGTDG-- 289

Query: 259 AVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPP----KFTEVTDVVLITR 314
               +S         ++   P   G  S ++L   V    +            + VL+T 
Sbjct: 290 DAEAVSSIANNELSATVAQDPAQIGATSLDLLIEAVESGKKGEVGTFPEKTPVESVLVTA 349

Query: 315 DNFKEEL 321
           +N  +  
Sbjct: 350 ENAADFQ 356


>UniRef50_B1LAH5 Periplasmic binding protein/LacI transcriptional regulator n=3
           Tax=Thermotoga RepID=B1LAH5_THESQ
          Length = 343

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 60/334 (17%), Positives = 106/334 (31%), Gaps = 43/334 (12%)

Query: 18  SQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA--VPDGEKTLNAIDS 75
           S    +E++ +    K    P++         A + LG + I  A    D  K    I S
Sbjct: 15  SVFVFSEDMTILLAPKSLNNPYWFAVENGMKDAAEKLGIKAIFDAPVEADAAKQAEKILS 74

Query: 76  LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135
               G  G  I   DP+    +V +A    + VI  D    ++          +      
Sbjct: 75  YIVKGVDGIGISPNDPEGIKVVVKRALDKGIPVIMFDSDSPDSG-----RYAYIGTNNYN 129

Query: 136 IGERQGQELYKEMQK-RGWDVKESAVMAITANELDTARRRTTGSMDALK---AAGFPEKQ 191
            G   G+ + + ++K R         +            R  G  DAL+        E  
Sbjct: 130 AGYEAGKLMAQLIEKYRAEKKTIRLAILTGGLAALNLNERIRGFKDALEDYSKRSGKEIV 189

Query: 192 IYQVP-TKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDS--------TVLGGVRATEGQ 242
               P    +D   A      +  ++ ++  W + G            + LGG       
Sbjct: 190 YVADPFPCDDDSAKAIQIIRDVTRKYTDLDGWFMSGGWPLFAPKETVISALGGPE----- 244

Query: 243 GFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVA------- 295
             +  D++ +G + +  + EL   +A    G +   P   GY S  +LYN          
Sbjct: 245 --RMKDLLVVGFDTL--LPELELVKAGAVKGLVGQRPYDMGYLSVLVLYNMAKIGVENTL 300

Query: 296 -------KDVEPPKFTEVTDVVLITRDNFKEELE 322
                  K+     +   T V ++T +N  +  E
Sbjct: 301 KMLPKVVKEDGTVDYIIDTGVDIVTEENVDQFYE 334


>UniRef50_A1STY3 Transcriptional regulator, periplasmic binding protein of LacI
           family protein n=1 Tax=Psychromonas ingrahamii 37
           RepID=A1STY3_PSYIN
          Length = 334

 Score =  195 bits (496), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 48/297 (16%), Positives = 104/297 (35%), Gaps = 20/297 (6%)

Query: 23  AENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---PDGEKTLNAIDSLAAS 79
            +   +  ++K    P+F+   + A +A KDLG  ++          ++ +  +  L   
Sbjct: 51  QDKHTIALVMKTLTNPFFKEMERGARRAEKDLGINLLVKTAAQETSIQQQIGIVADLIEL 110

Query: 80  GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA--KGKPMDTVPLVMMAATKIG 137
                VI   D      I+  A+   + VI +D+       K   +  VP + +      
Sbjct: 111 KVDALVIAPGDSVELIPILKHAQDKGIIVINIDNLLDQEYSKKVGLLNVPFISVDNELAA 170

Query: 138 ERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPT 197
            +  + L +++            +         A  R  G++ A   + F    +    +
Sbjct: 171 YKSTKVLTEKL-----TQPTEVAIIEGIRGALNAELRKNGAIRAFSESKF--ATLVATES 223

Query: 198 KSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGV 257
            +  I  AF+ A  +  ++P +    I   ND   LG +   +  G    ++  +  + +
Sbjct: 224 ANWKIDEAFELAAKLYNKNPNI--GAIFCANDMMALGVIEYLQSTGK--DNVQVVAFDAI 279

Query: 258 DAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITR 314
                L+  Q+     ++       GY+      N ++    P K T   +  +IT+
Sbjct: 280 --PQALNAVQSGVLLATVDQDAAEQGYQGILSANNILSGKKTPLKIT--IEAKIITK 332


>UniRef50_A1WJM2 Periplasmic binding protein/LacI transcriptional regulator n=5
           Tax=Proteobacteria RepID=A1WJM2_VEREI
          Length = 330

 Score =  194 bits (495), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 59/307 (19%), Positives = 113/307 (36%), Gaps = 19/307 (6%)

Query: 26  LKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIAVPDGEKTLNAIDSLAASGAKGF 84
            K+G  +K    P+F  + + A   GK+LG+EV+   A    +K ++ ++ L   G K  
Sbjct: 36  FKIGVSMKTLSAPYFAAQMEAAKARGKELGYEVLATDAQGKLQKQISDVEDLVTRGVKLL 95

Query: 85  VICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQEL 144
           +I   D +     V  A    +KV+ +D           + V  V  + +  G   G  +
Sbjct: 96  IINPADSEGLVNAVNNASANGVKVVVIDSTLN----PRANFVTQVQSSNSINGALVGHWV 151

Query: 145 YKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAA-----GFPEKQIYQVPTKS 199
            +E+  +         +          + R  G +  +  A     G  +  +       
Sbjct: 152 IEEVGNK----SLKIALLSGEKGNPVGQERRLGVLSGIIEAQLRKFGKADLTVVGQGWGH 207

Query: 200 NDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDA 259
            +  G   A   +LV + ++   +++G NDS VLG  RA E  G     ++    +    
Sbjct: 208 WNDEGGLKAMEDLLVANKDIN--MVLGENDSMVLGARRAIESAGRT-GILLVAAADAQKE 264

Query: 260 VSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKE 319
              L K     +  + L  P +    + ++    V  +V+      +T    IT+ N  +
Sbjct: 265 ALALIK--QGKYGVTGLNDPALVARTAIDLGVKVVKGEVKDVPKQTLTTPAAITKGNVDK 322

Query: 320 ELEKKGL 326
               K +
Sbjct: 323 FYNPKAV 329


>UniRef50_A1WNV9 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Proteobacteria RepID=A1WNV9_VEREI
          Length = 374

 Score =  194 bits (495), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 63/327 (19%), Positives = 127/327 (38%), Gaps = 21/327 (6%)

Query: 4   FTKALAAIGLAAVMSQSAMAENL--KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IK 60
               +AA+ LAA  +  A A N+  K+G++       W+Q   K     GKDLG EV ++
Sbjct: 36  LFIPVAAVTLAATFAAPAQARNMPRKIGYVTNYATHEWYQNVIKGMKAHGKDLGIEVEVQ 95

Query: 61  IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG 120
            A  D  K + A +   A G    +I   + +    ++ KA+  ++ V+   +       
Sbjct: 96  DANLDIAKQVAAAEDFIAKGVDVLIITPVNEEGVVPLLRKAKAANIPVVLEGNPVKGMTT 155

Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180
                           G   G+   K++           VM +    L     R+ G MD
Sbjct: 156 MVAICDYDTG---YFSGIEAGKYAKKKLGGTAK------VMNVGLPLLSATVLRSKGFMD 206

Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240
            ++    P   +        +   A + +++ L ++ ++    I G+NDS+ LGG++A +
Sbjct: 207 GIRTV-IPGATMVHDLDGGGNPDRALEVSSAALAKNADINI--IYGINDSSSLGGLQAWK 263

Query: 241 GQGFKAADIIGIGIN--GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDV 298
             G    +++ +G    G+  ++ + K  +     ++   P+  GY + +       ++ 
Sbjct: 264 AAGKSQDNLLTVGTGGEGLAFINAIEKEPSYRIEAAMF--PEKEGYTAIDAAVKLFNQEK 321

Query: 299 EPPKFTEVTDVVLITRDNFKEELEKKG 325
            P           +  D++K+     G
Sbjct: 322 VPQHIVS--PTAPMNGDDWKKYYSYDG 346


>UniRef50_B9JQE2 D-ribose-binding periplasmic protein n=1 Tax=Agrobacterium
           radiobacter K84 RepID=B9JQE2_AGRRK
          Length = 334

 Score =  194 bits (494), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 57/344 (16%), Positives = 104/344 (30%), Gaps = 37/344 (10%)

Query: 2   HKFTKALAAIGLAAVMS--QSAMAENLKLGFLVKQPEEPWFQTEWKFADKA-GKDLGF-- 56
                 +   GL  +      A  + +K+G  V   +  + Q       K      G   
Sbjct: 6   RTTLAIIGGAGLLPIAGKVGFAADKPVKVGAAVYGLKNEYAQIWAAEIKKHPAFANGIAE 65

Query: 57  EVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116
             +     D     +  D +A       +    D      ++ KA   ++ V+       
Sbjct: 66  LTVFDGNYDHATQASQFDLMATQHYDVAIYIPIDSYAAKGVIHKAALKNLPVVG-----S 120

Query: 117 NAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTT 176
           N   K  + V  +       G+ + + L+K +  +G       V+ I          RT 
Sbjct: 121 NGPAKSDELVSFIGSDDVAAGQYEAETLFKAIGDKGN-----IVVLIGPEGNLGQELRTE 175

Query: 177 GSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGV 236
           G+  AL A    +  + +  T +     A     + L  H   K   ++  ND   LG +
Sbjct: 176 GNKKALDAN--KDITVLERKTANWSRSEAMVLMQNWLTSHKG-KINGVLAQNDEMGLGAI 232

Query: 237 RATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAK 296
            A +  G     I  +GI+GV     +   Q+     S+          + ++    V  
Sbjct: 233 AAMKAAGIDPKTIPVVGIDGV--TDAVRAVQSGDMILSIRQDAQTQAQGAVDIALRRVIG 290

Query: 297 DVEPP-----------------KFTEVTDVVLITRDNFKEELEK 323
           D   P                           +T++N  E L+K
Sbjct: 291 DSYQPLAECWKKYPQMAWGNGTDKLYSVPWTYVTKENAAEFLQK 334


>UniRef50_A6BKA3 Putative uncharacterized protein n=6 Tax=Clostridiales
           RepID=A6BKA3_9FIRM
          Length = 355

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 49/336 (14%), Positives = 116/336 (34%), Gaps = 22/336 (6%)

Query: 5   TKALAAIGLAAVMSQSAMAENL-KLGFLVKQPEEPWFQTEWKFADKAGKDLG------FE 57
              L A  +     +S   +++ ++G +    ++P+         +  K +         
Sbjct: 24  VILLIAFLITGCEDKSVKRDHIIRIGVVTYTQDDPFINAMTDQLKENLKKMETDLMKIIT 83

Query: 58  VIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN 117
            +K    + +     ++ +  +G     +   D    S I+  A+  D+ V+  + + V 
Sbjct: 84  TVKNGDDNQQDQNEIVEEMIDAGCDVLCVNLVDRTAPSRIIRMAKQEDIPVLFFNREPVR 143

Query: 118 AKGKPMDTVPLVMMAATKIGERQGQELYKEMQ-----KRGWDVKESAVMAITANELDTAR 172
                 + +  +   A + G  QG+ +   ++      +  D K   ++         A 
Sbjct: 144 EDLMQWEKLYYIGCNAEQSGIMQGEIVADYIKNHPEVDKNQDGKIQYILLEGEAGHQDAI 203

Query: 173 RRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTV 232
            RT  S+  L   G  + +         +   A +  + ++ Q+ + +  L++  ND   
Sbjct: 204 SRTDYSVKTLLEQGI-DLEKLSYQFADWNRGQAENRMSRLIEQYGD-EIELVISNNDEMA 261

Query: 233 LGGVRATEGQGFKAADIIGI-GINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLY 291
           LG V A +  G+   +   I GI+G+D   E  K       G++    +    + +++  
Sbjct: 262 LGAVAAWQKAGYDCRNWPVIFGIDGLDDALEAIK--TGKMKGTVYNDKEDQAMELAKLSV 319

Query: 292 NWVAKDVE-----PPKFTEVTDVVLITRDNFKEELE 322
             V                V++   +   N    L+
Sbjct: 320 EIVCGKDTNRKHLKEGRYYVSEYCRVDSSNVDHFLK 355


>UniRef50_C1D9L7 RbsB protein n=1 Tax=Laribacter hongkongensis HLHK9
           RepID=C1D9L7_LARHH
          Length = 330

 Score =  194 bits (494), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 56/307 (18%), Positives = 110/307 (35%), Gaps = 22/307 (7%)

Query: 14  AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEV-IKIAVPDGE--KTL 70
           A   S        ++  ++K P  P+F      A +A  + G ++ IK+A  D    + +
Sbjct: 34  AFSQSAGQNTSPARIVLVMKSPTNPYFSELANGASRAQLETGIDLSIKVAHEDDALEQQI 93

Query: 71  NAIDSLAAS-GAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVN--AKGKPMDTVP 127
             ID + A   A   VI   D      ++A+AR   + VI + ++          M  VP
Sbjct: 94  RLIDEVIAKHQADAIVIAPTDSIRLVPVLARARKAGIHVINIGNRLEPRIVALYGMPVVP 153

Query: 128 LVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGF 187
           L+ +       +   +L + + +          +       +  R+RT G++ A   AG 
Sbjct: 154 LISIDNASAAYQVAGKLAEGLPRGSKVA-----IIEGLLGTNNTRQRTEGALQAFSEAG- 207

Query: 188 PEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAA 247
              ++    +       A+     +L  +P+++   I   ND   LG  R    +G    
Sbjct: 208 --LRVVAKQSARWKGDEAYQVTAQLLRDYPDLR--AIFCSNDMMALGAARYLREKGITG- 262

Query: 248 DIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVT 307
            +   G +G+         +      ++       GY +  +  + +A    P     + 
Sbjct: 263 -VRLAGFDGITEARSALHQRQ--LVATIDQHASEQGYLAVRLAVDAIAGR--PLAEETLV 317

Query: 308 DVVLITR 314
           D  L+T 
Sbjct: 318 DTELLTA 324


>UniRef50_A5KKL8 Putative uncharacterized protein n=1 Tax=Ruminococcus torques ATCC
           27756 RepID=A5KKL8_9FIRM
          Length = 325

 Score =  194 bits (493), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 56/342 (16%), Positives = 117/342 (34%), Gaps = 38/342 (11%)

Query: 1   MHKFTKALA------AIGLAAVMSQSAMAENLK-------------LGFLVKQPEEPWFQ 41
           M K   A+A       +  A   S+S    + K             +   V   +  +  
Sbjct: 2   MKKKMLAVAVCVSMCMMAFAGCTSESGGGSDKKAEQTEGKKEESGKVFMTVSNQQNEFMV 61

Query: 42  TEWKFADKAGKDLGFEV-IKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAK 100
              +   + G+  G+EV +  A  D  K ++ I++  +  A+  ++        +  + +
Sbjct: 62  GMAENFKEVGEAAGYEVQLMDADLDATKQVSQIETAISENAEAILVEPCSVDGLTTGLKE 121

Query: 101 ARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAV 160
           A    + V  + +              L+ +   + GE + +++ K+  +          
Sbjct: 122 AHDAGIPVFVIHNNVSATD----LVTSLIHVDVRQGGELKMEQVIKDCGEDAKIA----- 172

Query: 161 MAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVK 220
           +       DT  +   G    L+   +P  ++      +     A   A + L    E+ 
Sbjct: 173 IMTGTLGQDTTNQICGGYDAVLEK--YPNVEVVFEGAGNWGATDAAPLAENWLASGKEID 230

Query: 221 HWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPD 280
              IV  ND   LG V   +  G K+  I   G++  +    L    +     ++     
Sbjct: 231 --AIVCNNDGMALGVVSVLKSAG-KSEQIKVYGLDATN--EGLKAVDSGEMAATIYVDSK 285

Query: 281 VHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELE 322
               K+ EML +  A      ++      VL+T++N KE ++
Sbjct: 286 AEIEKAFEMLEDLKAGKKVDAEYK--VPSVLVTKENVKEYMK 325


>UniRef50_B8ZUE5 Putative D-ribose-binding protein n=2 Tax=Mycobacterium leprae
           RepID=B8ZUE5_MYCLB
          Length = 345

 Score =  194 bits (493), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 61/323 (18%), Positives = 107/323 (33%), Gaps = 19/323 (5%)

Query: 4   FTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVI-KIA 62
               L    L A     +    L +G        P++    +F D+    LG  +    A
Sbjct: 16  LILGLLPAILPACGFSESHH-KLTIGVSYPTANSPFWNAYTRFIDEGSHQLGVYINAVSA 74

Query: 63  VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKG-- 120
             D +K L+ +++L   G  G ++      +   ++  A   ++ V+ VD     A G  
Sbjct: 75  EEDEQKQLSDVETLINQGIDGLIVTPQSTSIAPTLLRIATQANIPVVVVDRYPGYAPGQN 134

Query: 121 KPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMD 180
           K  D V  +     K G    + L      +        +          A+ R  G   
Sbjct: 135 KNADYVAFLGPNNEKAGSGIAEALMAGGGSK-------FLALGGMPGNSVAQGRKAGLES 187

Query: 181 ALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATE 240
           AL A G    ++ Q     +       AA +ML  HP      I   ND    G ++A  
Sbjct: 188 ALTAVGH---RLVQFQYAGDSEDKGLAAAENMLQAHPAGDANAIWCFNDKLCQGAIKAVY 244

Query: 241 GQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEP 300
               +   I      G+D   +   A   G Y   L +  + G     +LY  +    +P
Sbjct: 245 NANREKEFI----FGGMDLTPQAIAAIENGLYTVSLGAHWLEGGFGLAILYRKIHGQ-DP 299

Query: 301 PKFTEVTDVVLITRDNFKEELEK 323
            +     D++ + + N  +   +
Sbjct: 300 AERMVKLDLLKVDKSNVAKFKAR 322


>UniRef50_A8S3L7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8S3L7_9CLOT
          Length = 378

 Score =  194 bits (493), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 52/311 (16%), Positives = 107/311 (34%), Gaps = 20/311 (6%)

Query: 15  AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK---IAVPDGEKTLN 71
           A+       +  K+G L+      ++ T     ++A +DLG E+      A  D +  L+
Sbjct: 79  ALGELPKSGQGEKIGVLISSTSNEFWGTMKTRYEEAAEDLGIEIRVFEADAEDDTQGQLD 138

Query: 72  AIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNA--KGKPMDTVPLV 129
           A++++   G    ++   D       +  A   ++ VI +                   +
Sbjct: 139 ALNTMVTMGFDAIILSPIDGTNLIPGIVAANEAEIPVINLGPGVDAEALADAGGHLDGKI 198

Query: 130 MMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPE 189
            +   + G     ++   M+  G        +         +  RT G+    +      
Sbjct: 199 TVNFEEQGSTVANDMISRMEDGGKVA-----ILAGLEGAGQSVGRTNGAKTVFENTE--G 251

Query: 190 KQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADI 249
            ++        D   A++A   +L  HP++K   I   ND+  L  V+A +  G K  D+
Sbjct: 252 VELVAAQACDWDTEKAYEATKDILTAHPDLKG--IFACNDNMALAAVQALQEMGNK--DV 307

Query: 250 IGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDV 309
           +  G++           +     GS+  S  ++   + EM    V              +
Sbjct: 308 MVYGVDYTTDAKAAI--EDGTMMGSMTYSSAIYTKAAEEMAMLIVQGKTFKDPVY--LPL 363

Query: 310 VLITRDNFKEE 320
            L+T+DN  + 
Sbjct: 364 TLVTQDNVADF 374


>UniRef50_B2JTD1 Periplasmic binding protein/LacI transcriptional regulator n=3
           Tax=Burkholderia phymatum STM815 RepID=B2JTD1_BURP8
          Length = 322

 Score =  194 bits (493), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 74/327 (22%), Positives = 114/327 (34%), Gaps = 20/327 (6%)

Query: 1   MHKFTKALAAIGLAAVMS---QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFE 57
           M K  K L  IGLA  M+     A A+ + LG++    + P+     +  + A K  G +
Sbjct: 1   MKKCFKKLGLIGLAGAMAFMTDVAAAKEITLGYVAAGMQYPFNVAAARGFEAAAKAAGVK 60

Query: 58  VIK-IAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFV 116
            I   A    EK  NA+D L A    G  +   D  +  + V +A  +++  +AV  Q  
Sbjct: 61  TIVLDAKTSVEKQGNAVDDLIAQKVDGIAVLPIDAVVAQSWVERATSHNIPFVAVATQIG 120

Query: 117 NAKGKPMDTV-----PLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTA 171
           + +   ++ V      LV      +G    Q   K +     D      +   A    T 
Sbjct: 121 DPQKHAINDVYPKLTALVASDEVHVGTDAAQIAAKLLP---KDRTAKIAIVEGAPGYPTV 177

Query: 172 RRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDST 231
            + T G  + L  AG    QI                  ++LV HP+V   LI    D  
Sbjct: 178 WQVTKGFKEGLDKAGVK-YQIVASQPTDWTPEKGESVCQNILVAHPDVD--LIFNQADDM 234

Query: 232 VLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLY 291
           V+G  RA    G  A     +   G        K       G++   P   G ++ + LY
Sbjct: 235 VIGCARAVRAAGSHA---KLVSRGGSKLGINAVKV--GDVDGTVCIQPGKMGERAFKALY 289

Query: 292 NWVAKDVEPPKFTEVTDVVLITRDNFK 318
             V     P       D   +T+    
Sbjct: 290 AAVTDPNAPKAKFIDVDTPQVTKATLS 316


>UniRef50_B9JQF4 Sugar-binding transcriptional regulator, LacI family n=1
           Tax=Agrobacterium radiobacter K84 RepID=B9JQF4_AGRRK
          Length = 337

 Score =  194 bits (493), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 46/347 (13%), Positives = 93/347 (26%), Gaps = 39/347 (11%)

Query: 1   MHKFTKALAAIGL----AAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFAD---KAGKD 53
           M K     A   L     A+    A A+  K+  +V+     +       A         
Sbjct: 3   MTKRALLGATTVLCLLGTALTGAPAYAKTFKIAAIVQSLNTEYNVLWADAAKSHPALADG 62

Query: 54  LGFEVIKIAVPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD 113
                +     D     N  D+         +    D   G+  + +A+   + V   + 
Sbjct: 63  TATLTVLDGRQDVLTQSNLFDTAITEKYDAIIFIPVDIDAGNEPIERAKAAGIPVFGSNT 122

Query: 114 QFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARR 173
                +         +     + GE   + +  +  K         V+           +
Sbjct: 123 VVSKTE----LYDAYINSNDVEAGEMLAKAVIDKAGKDAK-----VVVLEGMLGQSAQVQ 173

Query: 174 RTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVL 233
           R  G  + LK        I +  T +     A     + L  H + +   ++  ND   +
Sbjct: 174 RLEGINNVLKQNS--GVTILEQNTANWSRAEAITLMENFLTSHGD-QVQGVLAENDEMAV 230

Query: 234 GGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNW 293
           G +      G     +   G++G+    E  K        S+L         + ++  + 
Sbjct: 231 GAIEGIRNHGLDPKKLPVAGVDGIKDALEAVK--RGEQTMSILQDASGQSQGAIDLALSK 288

Query: 294 VAKDVEPP------------------KFTEVTDVVLITRDNFKEELE 322
           +  D   P                  +       + +T DN  + L 
Sbjct: 289 LVGDTYKPRAKVWDTNGGKLAWNGGKEEHYYVPWLAVTSDNVDKVLA 335


>UniRef50_C6C3I7 Periplasmic binding protein/LacI transcriptional regulator n=6
           Tax=Proteobacteria RepID=C6C3I7_DICDC
          Length = 311

 Score =  193 bits (492), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 58/322 (18%), Positives = 122/322 (37%), Gaps = 18/322 (5%)

Query: 1   MHKFTKALAAIGLAAVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK 60
           M   +  L A   +A+   +  AE   +  LV   + P++ +E K ADK  ++LG++   
Sbjct: 1   MKLRSMLLTAAITSALSLTAHAAEKGTIMILVNSLDNPYYASEAKGADKKAQELGYKTTV 60

Query: 61  IAVP-DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAK 119
           ++   D +K    ID+      +G V+   D     A + KA+   + V+ ++ +     
Sbjct: 61  LSHGEDVKKQSELIDAAIGKKVQGIVLDNADSTASVAAIKKAKAAGIPVVLINREIPVDD 120

Query: 120 GKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSM 179
              +     +     + G        ++M ++G   + +  +       +    R+    
Sbjct: 121 VALVQ----ITHNNFQAGSDVANVFVEKMGEKGKYAELTCSL-----ADNNCVTRSKSFH 171

Query: 180 DALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRAT 239
             L    +P             +       +S+L  HP+VK   ++  N    LG + A 
Sbjct: 172 QVLDQ--YPGMASIARQDAKGTLIDGKRIMDSILQAHPDVKG--VICGNGPVALGAIAAL 227

Query: 240 EGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVE 299
           +  G    D++ +GI+G +   +  K        +++        +    L N++ K  +
Sbjct: 228 KAAGRN--DVVVVGIDGSNDERDAVK--EGSLKATVMLQAQAIAAQGVTDLDNFIQKGAK 283

Query: 300 PPKFTEVTDVVLITRDNFKEEL 321
           P K   +   +LI +DN  +  
Sbjct: 284 PAKQRVMFRGILIQQDNASKVQ 305


>UniRef50_B7GJK7 ABC-type sugar transport system, periplasmic component n=1
           Tax=Anoxybacillus flavithermus WK1 RepID=B7GJK7_ANOFW
          Length = 332

 Score =  193 bits (491), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 49/296 (16%), Positives = 110/296 (37%), Gaps = 22/296 (7%)

Query: 30  FLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV--PDGEKTLNAIDSLAASGAKGFVIC 87
            + ++ + P+++   + A +AGK+    +  I       ++ +  ++   AS   G ++ 
Sbjct: 57  LISQEFDNPYWRKIEQGAKEAGKNYDVNIEYIGPLRTSVDEQVKLLEKAIASRVDGIIVQ 116

Query: 88  TPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKE 147
               +    ++ KA   ++ VI +D     A       +  V     + G+  G+ +   
Sbjct: 117 NLKDEAFIPLIDKAISRNIPVITID-----ADAPKSRRIAYVGTNNFEAGQLLGKAVVSR 171

Query: 148 MQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFD 207
           ++           + I  +  +  R R  G +  +  A  P  ++  V + +     A  
Sbjct: 172 VEGERELG-----VMIGTDTSENQRLRLQGFLSVI--AEHPRLKVVSVASSNISRIQASI 224

Query: 208 AANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQ 267
            A  ML +HP +   +     D   +G   AT+    +  DI   G + V+   E    Q
Sbjct: 225 QAEQMLRKHPHISVMVGTSALD--AIGIRMATKNLHRQ--DIQIFGFDDVEETIEAI--Q 278

Query: 268 ATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRDNFKEELEK 323
                 +++  P   GY + +++   ++      +        +I R N ++E  K
Sbjct: 279 QGDIVATVVQKPYDMGYSAVKLMVEHLSGKQIQKEHFTAI--EVIDRQNVQQERNK 332


>UniRef50_Q4ZU91 Periplasmic binding protein/LacI transcriptional regulator n=4
           Tax=Pseudomonas RepID=Q4ZU91_PSEU2
          Length = 306

 Score =  193 bits (491), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 46/305 (15%), Positives = 93/305 (30%), Gaps = 15/305 (4%)

Query: 17  MSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIK-IAVPDGEKTLNAIDS 75
            +  A A    +G  + +  + +        +K    L  ++       D E  +    +
Sbjct: 15  FAGLAQAATPLIGVGMAKYNDNFQTILRHGVEKQVALLDADIFMENGQDDVELQMRQFRN 74

Query: 76  LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135
           L  S     V+     K    ++  A    + ++ V+                V     +
Sbjct: 75  LVNSKVDAIVVAMVSGKSAPEMMRLANEAKVPLVFVNRNP--EPATWPALTAFVGSDELE 132

Query: 136 IGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQV 195
            G  Q +EL +    +G       V+ +      ++  RT      +    +P+ ++ Q 
Sbjct: 133 SGTLQMEELARRANYKGN-----VVILVGDPSNKSSVMRTEDVEKVVAK--YPDMKVVQK 185

Query: 196 PTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGIN 255
              + +   A       + Q   V   +I   ND   +G +   E  G KA D +  GI+
Sbjct: 186 KIGNWERSQAATIVIEWVKQ--GVDFSIIAANNDEMAIGAIMGLEKTGKKAGDYLVGGID 243

Query: 256 GVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLITRD 315
           G     +L          S+          + +        +        V    LIT +
Sbjct: 244 GTPDGLKLMA--EGKMAVSVFQDALGQANGAVDAAMRMARGETLASPVIWV-PFKLITPE 300

Query: 316 NFKEE 320
           N ++ 
Sbjct: 301 NRQQF 305


>UniRef50_A5FZM3 Periplasmic binding protein/LacI transcriptional regulator n=1
           Tax=Acidiphilium cryptum JF-5 RepID=A5FZM3_ACICJ
          Length = 339

 Score =  193 bits (491), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 59/313 (18%), Positives = 109/313 (34%), Gaps = 26/313 (8%)

Query: 19  QSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---PDGEKTLNAIDS 75
            +  A++     + K    P++    + AD A K  G  V   A     D    +  +++
Sbjct: 37  PAKPAKHYHFTLITKSNASPYWLAVREGADAAAKKFGVSVAFEAPASGTDLAGQIGMVNN 96

Query: 76  LAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATK 135
               G  G ++   +P+     V  A  + + V+ VD         P  +   +  +   
Sbjct: 97  AVTGGTDGIILAAQNPQALLKPVKSALAHHIPVVTVDSGLS-----PNISDCFLATSNVG 151

Query: 136 IGERQGQELYKE-MQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQ 194
                 +      M  +G        +    +   T   R  G M  +K   +P  +   
Sbjct: 152 AAAALAKYTADHLMGGKGQYA-----IVDFNHTASTGIARPKGFMLGMK--SYPHIKKMG 204

Query: 195 -VPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIG 253
            +   +ND+      A +ML Q+P +K  +I G ND   LG   A +    K   +  +G
Sbjct: 205 PIQYSNNDVSAGLRIATTMLTQYPHLK--VIFGANDRAALGPAEAVQRAHAK---VKVVG 259

Query: 254 INGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVLIT 313
            +    + E++  +A     S+L SP   GY +   L + +     P +    T   L+T
Sbjct: 260 FDA--DLGEIALVKAGIIQASILQSPYDMGYYAVVALLDKLDGKTLPKRIN--TPYFLLT 315

Query: 314 RDNFKEELEKKGL 326
             N         +
Sbjct: 316 PKNLGSSQATAAI 328


>UniRef50_A8RQW7 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC
           BAA-613 RepID=A8RQW7_9CLOT
          Length = 354

 Score =  193 bits (491), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 45/315 (14%), Positives = 97/315 (30%), Gaps = 22/315 (6%)

Query: 15  AVMSQSAMAENLKLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIAV---PDGEKTLN 71
           A  +++       +  + K     ++Q     A  AG D G+ +         D E  + 
Sbjct: 52  AAPTEAKEDAEKVIAVIPKSLLFDYWQYVRIGAQSAGLDEGYAIDFQGTRTDTDLEGQVK 111

Query: 72  AIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMM 131
            ++     G    VI   +P     ++ +A    + VI +D +      +       V  
Sbjct: 112 LVEDFIQRGVSAIVISPVNPDGMVPVLQQAEDAGIPVIIMDGKLNADFPR-----STVST 166

Query: 132 AATKIGERQGQELYKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQ 191
                G+   ++L +     G     +  +            R  G  D L    +P  +
Sbjct: 167 NDEAAGKFAAEKLKELAGDAGG----TFAIVSAVPGAVQEGGREKGFSDEL--GTYPNYK 220

Query: 192 IYQVPTKSNDIPGAFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIG 251
           I        D    ++    +L  +P++  +    +N+ +  G          K    I 
Sbjct: 221 IIGTYYGKGDRNQTYNITQDILTSNPDITGF--YTVNEGSSAGVTLGVREGDLKEK--IF 276

Query: 252 IGINGVDAVSELSKAQATGFYGSLLPSPDVHGYKSSEMLYNWVAKDVEPPKFTEVTDVVL 311
           +  +    V +  +       G++  +P + G  +       +  +    K      V  
Sbjct: 277 VAFDPSTEVLDAIR--DGYVDGAVAQNPYLIGRTAVLNAIKVLNGETVEKKID--VPVTW 332

Query: 312 ITRDNFKEELEKKGL 326
           +T DN  +   +  L
Sbjct: 333 VTIDNLDDPEIQNVL 347


>UniRef50_C8WV69 Periplasmic binding protein/LacI transcriptional regulator n=3
           Tax=Firmicutes RepID=C8WV69_ALIAD
          Length = 349

 Score =  193 bits (490), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 45/310 (14%), Positives = 101/310 (32%), Gaps = 30/310 (9%)

Query: 27  KLGFLVKQPEEPWFQTEWKFADKAGKDLGFEVIKIA--VPDGEKTLNAIDSLAASGAKGF 84
               +       +++  +     A KDLG + +       D  + +  +  + A    G 
Sbjct: 57  TYYMVTFLSGIEYWKGCFAGMQAAAKDLGVKAVFTGAPQYDINQEVTTMQQVIAKHPAGI 116

Query: 85  VICTPDPKLGSAIVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQEL 144
           ++ + + +  + ++ +A    + VI+ D                +  +  + G++    L
Sbjct: 117 LVTSINAQAMTPVINQAIAAGIPVISFDS-----DAPQSKRYAYLGTSNIEAGQKAADYL 171

Query: 145 YKEMQKRGWDVKESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPG 204
            + +   G       V  IT        +R  G  D + AA +P  ++  V   ++D   
Sbjct: 172 GQALGGHGE------VAVITTPGELNLDQRVQGFKDEM-AAKYPGVKVVAVQNGNSDQIK 224

Query: 205 AFDAANSMLVQHPEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELS 264
                +++L  +P +    I         G   A +  G K   +  +  +   A     
Sbjct: 225 TAQVTSALLQTYPNLAG--IFCTEADEGTGAATAVQEAG-KTGTVKIVSFDTDKATLNAI 281

Query: 265 KAQATGFYGSLLPSPDVHGYKS-----------SEMLYNWVAKDVEPPKFTEVTDVVLIT 313
           K  +     ++       G+                + NW    V+P      T V ++T
Sbjct: 282 K--SGQITATVAQGTWNMGFWGLMDLFAIHHNLVHPVANWQQSGVDPVPPEVDTGVTIVT 339

Query: 314 RDNFKEELEK 323
           + N    L++
Sbjct: 340 KSNVNAYLQQ 349


>UniRef50_A4XG54 Periplasmic binding protein/LacI transcriptional regulator n=2
           Tax=Clostridia RepID=A4XG54_CALS8
          Length = 345

 Score =  193 bits (490), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 56/357 (15%), Positives = 105/357 (29%), Gaps = 52/357 (14%)

Query: 1   MHK----FTKALAAIGLAAVMS----------QSAMAENLKL--------GFLVKQPEEP 38
           M K    +     AI L   ++            A + N KL          +       
Sbjct: 1   MKKNFYKYLSIFLAIALIVSLAYALVPNSKDVTQASSGNPKLKGSPKEEYYMVTFASGIE 60

Query: 39  WFQTEWKFADKAGKDLGFEVIKIA--VPDGEKTLNAIDSLAASGAKGFVICTPDPKLGSA 96
           +++  +K    A    G + I       D  + +  +  + A    G ++   +P    A
Sbjct: 61  YWKGCFKGMKAAADLYGVKAIYTGAPQFDVNQQVTVLRQVIAKKPAGILVTCANPDALKA 120

Query: 97  IVAKARGYDMKVIAVDDQFVNAKGKPMDTVPLVMMAATKIGERQGQELYKEMQKRGWDVK 156
            + +A    + VI  D     A         ++       G    + L K +  +G    
Sbjct: 121 PIDEAIKKGIPVITFD-----ADSPKSLRYSVLETGNYNAGAMAARYLGKLLGGKGEVGI 175

Query: 157 ESAVMAITANELDTARRRTTGSMDALKAAGFPEKQIYQVPTKSNDIPGAFDAANSMLVQH 216
            +    +         +R  G +D LK   FP  ++  +    ND   A     +ML  H
Sbjct: 176 STVAAQLNH------EQRKQGFIDTLKK-EFPGIKVVSIVNDENDSTKAARGVAAMLQAH 228

Query: 217 PEVKHWLIVGMNDSTVLGGVRATEGQGFKAADIIGIGINGVDAVSELSKAQATGFYGSLL 276
           P +K   I   +    +G   A +    K   I  +  +      +L K        S+ 
Sbjct: 229 PNIKG--IFCTDAPGGVGVATAIKEAN-KVGKIKIVSFDTDKGTLDLIK--QGVIDASIA 283

Query: 277 PSPDVHGYKSSEMLYNWVAK-----------DVEPPKFTEVTDVVLITRDNFKEELE 322
                 G+     L+                 + P      T  +++T+ N     +
Sbjct: 284 QGTWNMGFWGMTFLFYLKHGIVNPVDNWKKFGINPLPPYVDTGTMVVTKQNVDAFYK 340


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.313    0.164    0.451 

Lambda     K      H
   0.267   0.0503    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,659,579,489
Number of Sequences: 3077464
Number of extensions: 71606002
Number of successful extensions: 292193
Number of sequences better than 1.0e-01: 250
Number of HSP's better than  0.1 without gapping: 1601
Number of HSP's successfully gapped in prelim test: 5243
Number of HSP's that attempted gapping in prelim test: 276498
Number of HSP's gapped (non-prelim): 7731
length of query: 329
length of database: 1,040,396,356
effective HSP length: 129
effective length of query: 200
effective length of database: 643,403,500
effective search space: 128680700000
effective search space used: 128680700000
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.1 bits)
S2: 94 (40.5 bits)
