BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (34 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q321S5 Uncharacterized protein yoaI n=49 Tax=Enterobact...    66   4e-10
UniRef50_D2TUH6 Putative membrane protein n=1 Tax=Citrobacter ro...    53   4e-06
UniRef50_Q8ZPW6 Uncharacterized protein yoaI n=14 Tax=Salmonella...    40   0.023

>UniRef50_Q321S5 Uncharacterized protein yoaI n=49 Tax=Enterobacteriaceae
          RepID=YOAI_SHIBS
          Length = 34

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/34 (100%), Positives = 34/34 (100%)

Query: 1  MNDQMFVETLIITSSFFAIAVVLVLSVLLIERTG 34
          MNDQMFVETLIITSSFFAIAVVLVLSVLLIERTG
Sbjct: 1  MNDQMFVETLIITSSFFAIAVVLVLSVLLIERTG 34


>UniRef50_D2TUH6 Putative membrane protein n=1 Tax=Citrobacter rodentium ICC168
          RepID=D2TUH6_CITRO
          Length = 34

 Score = 52.8 bits (125), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 25/34 (73%), Positives = 30/34 (88%)

Query: 1  MNDQMFVETLIITSSFFAIAVVLVLSVLLIERTG 34
          MNDQMF+ETLII  SFF IA +LVLSVL++ER+G
Sbjct: 1  MNDQMFIETLIIAFSFFTIAALLVLSVLILERSG 34


>UniRef50_Q8ZPW6 Uncharacterized protein yoaI n=14 Tax=Salmonella enterica
          RepID=YOAI_SALTY
          Length = 35

 Score = 40.0 bits (92), Expect = 0.023,   Method: Compositional matrix adjust.
 Identities = 19/34 (55%), Positives = 27/34 (79%)

Query: 1  MNDQMFVETLIITSSFFAIAVVLVLSVLLIERTG 34
          M D  F+E L+IT+SFFAI +++V+SVLL+E  G
Sbjct: 1  MYDPPFLEALMITASFFAIFIIIVVSVLLLEGGG 34


Searching..................................................done



 ***** No hits found ******

  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.334    0.154    0.413 

Lambda     K      H
   0.267   0.0475    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 125,022,836
Number of Sequences: 3077464
Number of extensions: 2375046
Number of successful extensions: 16914
Number of sequences better than 1.0e-01: 3
Number of HSP's better than  0.1 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 16908
Number of HSP's gapped (non-prelim): 6
length of query: 34
length of database: 1,040,396,356
effective HSP length: 8
effective length of query: 26
effective length of database: 1,015,776,644
effective search space: 26410192744
effective search space used: 26410192744
T: 11
A: 40
X1: 16 ( 7.7 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 39 (21.5 bits)
S2: 88 (38.3 bits)