240 c1ir6A_ Probab=86.19   E-value=2.7  Score=22.03  Aligned_columns=132  Identities=12%

Q ss_pred             HHHHHHHHHHHHHCCCCEEECCCH--HHHHHHHHHHHHHHCCCCEEEECCHHHH-------HHHHHCCCCCCEEEEECCC
Q ss_conf             999999999997239835712530--7999999999997229909994796789-------8765208888589997266
Q batch____       122 YARLQKIIEVISKAPFIQITGLGG--SALVGRDLSFKLMKIGYRVACEADTHVQ-------ATVSQALKKGDVQIAISYS  192 (285)
Q Consensus       122 ~~~i~~~~~~I~~a~~I~i~G~g~--s~~~a~~~~~~l~~~g~~~~~~~~~~~~-------~~~~~~~~~~d~vI~iS~~  192 (285)
                      .+..+++.++|.++++|.++|...  ....|.-+...|.++|+.+.++......       ........+.|++|+...+
T Consensus        11 ~~a~~~l~e~i~~~~~I~I~~h~D~DGi~Sa~~l~~~L~~~gk~~~i~~~~~~~~~~~~~~e~~~~~~~~~dliii~D~g   90 (385)
T c1ir6A_          11 REAAALLEEALRQGKRIRVHGDYDADGLTGTAILVRGLAALGADVHPFIPHRLEEGYGVLMERVPEHLEASDLFLTVDCG   90 (385)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECCSSHHHHHHHHHHHHHHHHTTCEEEEECCCTTTSCSSCCGGGHHHHHTTCSEEEESSCC
T ss_pred             HHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCHHHHHHCCCCCCEEEEECCC
T ss_conf             99999999999749979999579810799999999999973994899936887634478988998302369799997488


Q ss_pred             CCCHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHCCEEEEECCCCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf             688899999999997799399994699883787569889835886413443107889999999999
Q batch____       193 GSKKEIVLCAEAARKQGATVIAITSLTDSPLRRLAHFTLDTVSGETEWRSSSMSTRTAQNSVTDLL  258 (285)
Q Consensus       193 g~~~~~~~~~~~ak~~g~~~i~IT~~~~s~l~~~ad~~l~~~~~~~~~~~~~~~s~~~~~~i~d~L  258 (285)
                      -...   .....++.+|.++|.|=..+.+.  .+.+..+.-|.-..........+.+....+..+.
T Consensus        91 ~~~~---~~~~~~~~~~~~vivIDHH~~~~--~~~~~~~inp~~~~~~~~~~s~s~l~~~l~~~l~  151 (385)
T c1ir6A_          91 ITNH---AELRELLENGVEVIVTDHHTPGK--TPPPGLVVHPALTPDLKEKPTGAGVAFLLLWALH  151 (385)
T ss_dssp             TTCG---GGHHHHTTSCCEEEEECCSCCCS--SCCSSEEECGGGSTTCCCCCCHHHHHHHHHHHHH
T ss_pred             CCCH---HHHHHHHHCCCEEEEECCCCCCC--CCCCEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf             7303---32688984499099957756876--7686699888447887410007899999999999


