226 d1juba_ Probab=98.88   E-value=7.9e-08  Score=74.38  Aligned_columns=266  Identities=18%

Q ss_pred             EEEECCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCCCCCCCCCCCCEEECCCCCCCCHHHHHHHH
Q ss_conf             57600434588758777851488999999874473155556655424876678762455531201102410068989999
Q batch____        43 TVSVFGETCATPVGPAAGPHTQLAQNIVTSWLTGGRFIELKTVQILDRLELEKPCIDAEDECFNTEWSTEFTLLKAWDEY  122 (1032)
Q Consensus        43 ~~~~~~~~~~~~~gpaagp~~ql~qn~~~~~~~g~r~~e~ktvq~~~~~~~~~pci~~~~~~~n~ews~e~~~~~~~~ey  122 (1032)
                      +.+|||.++.+||+.|+++.+...+...+....|.-++.+||+.......-++|++.....++                 
T Consensus         3 s~~~~G~~l~~Pi~~a~~~~~~~~~~~~~~~~~g~g~~~~~s~~~~~~~~~~~~~~~~~~~~~-----------------   65 (311)
T d1juba_           3 NTTFANAKFANPFMNASGVHCMTIEDLEELKASQAGAYITKSSTLEKREGNPLPRYVDLELGS-----------------   65 (311)
T ss_dssp             CEEETTEEESSSEEECTTSSCSSHHHHHHHHHSSCSCCBCCCBCSSCBCCSCSCCEEEETTEE-----------------
T ss_pred             EEEECCEEECCCEEECCCCCCCCHHHHHHHHHCCCCEEEECCCCCCHHCCCCCHHHHHHHCCC-----------------
T ss_conf             999999982696787777887998999999965998898324481100178343555531123-----------------


Q ss_pred             HHHHHHHHHHHHHHCCCCCCCCEEEEEEECCCCHHCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf             99999999999982687766735897652024011058227999887764014788899999998642123332155554
Q batch____       123 LKAWFALHLLEAMFQPSDSGKSFIFNMSVGYNLEGIKQPPMQQFIDNMMDASDHPKFAQYRDTLNKLLQDDAFLARHGLQ  202 (1032)
Q Consensus       123 ~k~~~~~~~~~~~~~~~~~~~~~~~~msvgy~l~gi~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (1032)
                                               .+++||+-.|+....=...-.--.-+.+.|+.              ..+.....+
T Consensus        66 -------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pi~--------------~~i~~~~~~  106 (311)
T d1juba_          66 -------------------------INSMGLPNLGFDYYLDYVLKNQKENAQEGPIF--------------FSIAGMSAA  106 (311)
T ss_dssp             -------------------------EECCCCCBSCHHHHHHHHHHHHHHTCSSSCCE--------------EEECCSSHH
T ss_pred             -------------------------CCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEE--------------EECCCCCHH
T ss_conf             -------------------------00145771668999999999998627894699--------------971689989


Q ss_pred             HHHHHHHHHHHCCCHHHCCCEEEEECCCCC-----------HHHHHHHHHHHHHCCCCEEEEEECCHHCCHHHHHHHH--
Q ss_conf             345555554310440003614553115899-----------8999999999851168304554071001779999999--
Q batch____       203 EKRESLQALPARIPTSMVHGVTLSTMHGCP-----------PHEIEAICRYMLEEKGLNTFVKLNPTLLGYARVREIL--  269 (1032)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~~t~st~hgc~-----------~~eie~i~~~~~~~~~l~~~~k~nptllg~~~~r~~l--  269 (1032)
                      +....+..+   ....-++.+.++.  +||           ++...++...+.+...+-..+|+-|.+-+........  
T Consensus       107 ~~~~~~~~~---~~~~~a~~i~in~--~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~pv~~k~~~~~~~~~~~~~a~~~  181 (311)
T d1juba_         107 ENIAMLKKI---QESDFSGITELNL--SCPNVPGEPQLAYDFEATEKLLKEVFTFFTKPLGVKLPPYFDLVHFDIMAEIL  181 (311)
T ss_dssp             HHHHHHHHH---HHSCCCSEEEEES--CCCCSSSCCCGGGCHHHHHHHHHHHTTTCCSCEEEEECCCCSHHHHHHHHHHH
T ss_pred             HHHHHHHHH---HHCCCCCEEECCC--CCCCCCCCHHHHCCHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCHHHHHHHH
T ss_conf             999999876---5235898773378--66554320032049899999999999722894110104777640029999888


Q ss_pred             HHCCCCEEECCCHHCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEEEC--------CCCCCCHHHCCCCCCCC
Q ss_conf             7529542405710112112468899999999999887392467899743444413--------68788045340588641
Q batch____       270 DVCGFGYIGLKEESFDHDLKLTQALEMLERLMALAKEKSLGFGVKLTNTLGTINN--------KGALPGEEMYMSGRALF  341 (1032)
Q Consensus       270 ~~~g~~~~~~~~~~f~~dl~~~~a~~~~~~l~~~~~~~~~~fgvkl~nt~~~~~~--------~~~~p~~~my~sg~~l~  341 (1032)
                      ...|-|                                    ++..+||.+-...        ...-..+..++||.++.
T Consensus       182 ~~~G~d------------------------------------~i~v~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~  225 (311)
T d1juba_         182 NQFPLT------------------------------------YVNSVNSIGNGLFIDPEAESVVIKPKDGFGGIGGAYIK  225 (311)
T ss_dssp             TTSCCC------------------------------------EEEECCCEEEEECEETTTTEESCSGGGGEEEEESGGGH
T ss_pred             HHCCCC------------------------------------EEEEECCCCCCCEECCCCHHCCCCCCCCCCCCCCCCCH
T ss_conf             737986------------------------------------99970886532102232100001334445664641104


Q ss_pred             EEEHHHHHHHHHHCCCCCCEEEECCC-CCCCHHHHHHCCCCCCCHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf             04300567767761777616531684-631678898718823010000137603688999998740
Q batch____       342 PLSINVAAVLSRAFDGKLPISYSGGA-SQLTIRDIFDTGIRPITMATDLLKPGGYLRLSACMRELE  406 (1032)
Q Consensus       342 ~~~i~~~~~~~~~f~~~l~~s~~~g~-~~~n~~~~~~~g~~~~t~~t~~l~p~gy~~~~~~~~~~~  406 (1032)
                      |+++.....+.++..+++||..+||+ +...+.+.+..|-..+-++|-+++ .|+..+..+.++|.
T Consensus       226 ~~a~~~~~~~~~~~~~~ipii~~GGI~~~~dv~k~l~lGAdaV~igta~~~-~g~~~~~~i~~eL~  290 (311)
T d1juba_         226 PTALANVRAFYTRLKPEIQIIGTGGIETGQDAFEHLLCGATMLQIGTALHK-EGPAIFDRIIKELE  290 (311)
T ss_dssp             HHHHHHHHHHHTTSCTTSEEEEESSCCSHHHHHHHHHHTCSEEEECHHHHH-HCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCCEEEECHHHHH-CCHHHHHHHHHHHH
T ss_conf             689999999888507896699947879999999999729989999278885-25899999999999