BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (160 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_B5F2A0 SsrA-binding protein n=362 Tax=Proteobacteria Re... 317 9e-86 UniRef50_B0TLG2 SsrA-binding protein n=12 Tax=Proteobacteria Rep... 204 8e-52 UniRef50_A1WX40 SsrA-binding protein n=13 Tax=Gammaproteobacteri... 187 1e-46 UniRef50_Q1LSR7 SsrA-binding protein n=17 Tax=Gammaproteobacteri... 179 2e-44 UniRef50_Q3JBU6 SsrA-binding protein n=47 Tax=Proteobacteria Rep... 171 9e-42 UniRef50_A1WPQ3 SsrA-binding protein n=5 Tax=Proteobacteria RepI... 165 5e-40 UniRef50_A5EXZ5 SsrA-binding protein n=4 Tax=Proteobacteria RepI... 163 1e-39 UniRef50_B8D947 SsrA-binding protein n=4 Tax=Buchnera aphidicola... 159 3e-38 UniRef50_A1TSJ4 SsrA-binding protein n=6 Tax=Proteobacteria RepI... 157 1e-37 UniRef50_Q1H274 SsrA-binding protein n=29 Tax=Bacteria RepID=SSR... 155 3e-37 UniRef50_Q12AT7 SsrA-binding protein n=8 Tax=Burkholderiales Rep... 153 2e-36 UniRef50_A5G3A5 SsrA-binding protein n=5 Tax=Bacteria RepID=SSRP... 147 1e-34 UniRef50_B8H482 SsrA-binding protein n=83 Tax=Proteobacteria Rep... 145 4e-34 UniRef50_A5UPS2 SsrA-binding protein n=171 Tax=Bacteria RepID=SS... 145 4e-34 UniRef50_Q7VRQ2 TmRNA-binding protein n=2 Tax=Candidatus Blochma... 144 1e-33 UniRef50_Q2N9K0 SsrA-binding protein n=85 Tax=cellular organisms... 143 2e-33 UniRef50_Q3MAP3 SsrA-binding protein n=12 Tax=Cyanobacteria RepI... 143 2e-33 UniRef50_UPI00016992A0 SsrA-binding protein n=1 Tax=Endoriftia p... 142 3e-33 UniRef50_A0PYP8 SsrA-binding protein n=125 Tax=Bacteria RepID=SS... 139 3e-32 UniRef50_Q89AM9 SsrA-binding protein n=1 Tax=Buchnera aphidicola... 138 5e-32 UniRef50_B7IP12 SsrA-binding protein n=102 Tax=Bacteria RepID=SS... 136 2e-31 UniRef50_A0FD64 TmRNA-binding protein n=1 Tax=Coxiella endosymbi... 135 3e-31 UniRef50_B2UY12 SsrA-binding protein n=24 Tax=Bacteria RepID=SSR... 135 6e-31 UniRef50_A9WJ45 SsrA-binding protein n=32 Tax=Bacteria RepID=SSR... 134 7e-31 UniRef50_Q72DV1 SsrA-binding protein n=12 Tax=Bacteria RepID=SSR... 134 1e-30 UniRef50_A8SP47 Putative uncharacterized protein n=2 Tax=Bacteri... 131 7e-30 UniRef50_C9KNB2 SsrA-binding protein n=1 Tax=Mitsuokella multaci... 129 3e-29 UniRef50_A9G109 SsrA-binding protein n=1 Tax=Sorangium cellulosu... 129 3e-29 UniRef50_C4Z0S0 SsrA-binding protein n=22 Tax=Bacteria RepID=C4Z... 128 6e-29 UniRef50_B3DV24 TmRNA-binding protein n=1 Tax=Methylacidiphilum ... 127 2e-28 UniRef50_C1F4B8 SsrA-binding protein n=1 Tax=Acidobacterium caps... 127 2e-28 UniRef50_A9NF97 SsrA-binding protein n=1 Tax=Acholeplasma laidla... 126 3e-28 UniRef50_B2V9T6 SsrA-binding protein n=7 Tax=Bacteria RepID=SSRP... 126 3e-28 UniRef50_A7HGZ0 SsrA-binding protein n=8 Tax=Bacteria RepID=SSRP... 125 4e-28 UniRef50_A4J8T4 SsrA-binding protein n=14 Tax=Bacteria RepID=SSR... 125 4e-28 UniRef50_Q04E23 SsrA-binding protein n=4 Tax=Lactobacillales Rep... 124 8e-28 UniRef50_Q8D389 SmpB protein n=1 Tax=Wigglesworthia glossinidia ... 123 2e-27 UniRef50_Q2RLS9 SsrA-binding protein n=8 Tax=Clostridia RepID=SS... 123 2e-27 UniRef50_A6G542 SsrA-binding protein n=2 Tax=Proteobacteria RepI... 121 7e-27 UniRef50_A5FZS6 SsrA-binding protein n=11 Tax=Alphaproteobacteri... 121 7e-27 UniRef50_Q057R8 TmRNA-binding protein n=1 Tax=Buchnera aphidicol... 121 7e-27 UniRef50_Q6Q8U8 Predicted SsrA n=1 Tax=uncultured marine gamma p... 121 8e-27 UniRef50_A8EWH6 SsrA-binding protein n=48 Tax=Epsilonproteobacte... 120 1e-26 UniRef50_A0LGB7 SsrA-binding protein n=7 Tax=Bacteria RepID=SSRP... 120 2e-26 UniRef50_A1KN98 SsrA-binding protein n=62 Tax=Bacteria RepID=SSR... 119 2e-26 UniRef50_C7M112 SsrA-binding protein n=1 Tax=Acidimicrobium ferr... 119 2e-26 UniRef50_D1U5X0 SsrA-binding protein n=2 Tax=Desulfovibrio RepID... 119 2e-26 UniRef50_Q1GDQ2 SsrA-binding protein n=12 Tax=Rhodobacterales Re... 119 3e-26 UniRef50_D2RBT7 SsrA-binding protein n=3 Tax=Bacteria RepID=D2RB... 119 3e-26 UniRef50_A9BF44 SsrA-binding protein n=3 Tax=Bacteria RepID=SSRP... 119 4e-26 UniRef50_Q2GCW3 SsrA-binding protein n=2 Tax=Neorickettsia RepID... 119 4e-26 UniRef50_B2ULK9 SsrA-binding protein n=3 Tax=Verrucomicrobia Rep... 118 8e-26 UniRef50_Q1MRU5 SsrA-binding protein n=5 Tax=Desulfovibrionales ... 118 8e-26 UniRef50_Q03AJ7 SsrA-binding protein n=110 Tax=Bacteria RepID=SS... 117 1e-25 UniRef50_Q2S237 SsrA-binding protein n=1 Tax=Salinibacter ruber ... 117 1e-25 UniRef50_C1ZDG5 SsrA-binding protein n=1 Tax=Planctomyces limnop... 117 2e-25 UniRef50_C0QVL0 SsrA-binding protein n=2 Tax=Brachyspira RepID=C... 116 2e-25 UniRef50_Q4JX42 SsrA-binding protein n=87 Tax=Bacteria RepID=SSR... 116 3e-25 UniRef50_D1BK11 SsrA-binding protein n=20 Tax=Bacteria RepID=D1B... 115 7e-25 UniRef50_C0JZT0 SsrA-binding protein n=1 Tax=uncultured bacteriu... 114 1e-24 UniRef50_B7KVC8 SsrA-binding protein n=25 Tax=cellular organisms... 114 1e-24 UniRef50_Q7UZP2 SsrA-binding protein n=33 Tax=cellular organisms... 114 1e-24 UniRef50_C5JAN1 SsrA-binding protein n=1 Tax=uncultured bacteriu... 114 2e-24 UniRef50_A3PWV5 SsrA-binding protein n=83 Tax=cellular organisms... 112 5e-24 UniRef50_B1MEU3 SsrA-binding protein n=68 Tax=Bacteria RepID=SSR... 112 6e-24 UniRef50_A0QU63 SsrA-binding protein n=25 Tax=Bacteria RepID=SSR... 111 6e-24 UniRef50_Q3ZZ31 SsrA-binding protein n=6 Tax=Bacteria RepID=SSRP... 111 7e-24 UniRef50_C8W8A6 SsrA-binding protein n=5 Tax=Coriobacteriaceae R... 111 8e-24 UniRef50_B2KCF8 SsrA-binding protein n=1 Tax=Elusimicrobium minu... 111 8e-24 UniRef50_Q6MQ46 SsrA-binding protein n=1 Tax=Bdellovibrio bacter... 110 2e-23 UniRef50_C7JH78 Trans-translation helper factor SmpB n=8 Tax=Ace... 109 3e-23 UniRef50_C8PPG5 SsrA-binding protein n=1 Tax=Treponema vincentii... 108 4e-23 UniRef50_Q2ST23 SsrA-binding protein n=4 Tax=Mollicutes RepID=SS... 107 1e-22 UniRef50_Q1IQ53 SsrA-binding protein n=1 Tax=Candidatus Koribact... 107 2e-22 UniRef50_B9XT05 SsrA-binding protein n=1 Tax=bacterium Ellin514 ... 107 2e-22 UniRef50_Q6MAG8 SsrA-binding protein n=4 Tax=Chlamydiales RepID=... 105 4e-22 UniRef50_Q04TV5 SsrA-binding protein n=6 Tax=Leptospira RepID=SS... 105 4e-22 UniRef50_A3ZLQ9 SsrA-binding protein n=2 Tax=Planctomycetaceae R... 104 8e-22 UniRef50_B1VAG4 SsrA-binding protein n=2 Tax=Candidatus Phytopla... 102 3e-21 UniRef50_B2GAM5 SsrA-binding protein n=4 Tax=Bacteria RepID=SSRP... 102 4e-21 UniRef50_Q9Z8K1 SsrA-binding protein n=2 Tax=Chlamydophila pneum... 102 6e-21 UniRef50_C9RKN3 SsrA-binding protein n=1 Tax=Fibrobacter succino... 100 2e-20 UniRef50_Q6YR70 SsrA-binding protein n=3 Tax=Candidatus Phytopla... 100 2e-20 UniRef50_B2S2D1 SsrA-binding protein n=2 Tax=Treponema pallidum ... 99 6e-20 UniRef50_D2PSC9 SsrA-binding protein n=1 Tax=Kribbella flavida D... 97 1e-19 UniRef50_C9LGK2 SsrA-binding protein n=8 Tax=Prevotella RepID=C9... 97 2e-19 UniRef50_Q3ARF1 SsrA-binding protein n=11 Tax=Chlorobiaceae RepI... 97 2e-19 UniRef50_A6DIW5 SsrA-binding protein n=2 Tax=Bacteria RepID=A6DI... 97 2e-19 UniRef50_Q254F5 SsrA-binding protein n=1 Tax=Chlamydophila felis... 97 2e-19 UniRef50_Q0SPD1 SsrA-binding protein n=20 Tax=Borrelia RepID=SSR... 96 4e-19 UniRef50_D2R3D1 SsrA-binding protein n=1 Tax=Pirellula staleyi D... 95 6e-19 UniRef50_Q7UH38 SsrA-binding protein n=1 Tax=Rhodopirellula balt... 95 7e-19 UniRef50_D1VZH7 SsrA-binding protein n=1 Tax=Prevotella timonens... 94 2e-18 UniRef50_Q11TP3 SsrA-binding protein n=36 Tax=Bacteroidetes RepI... 94 2e-18 UniRef50_B1AI43 SsrA-binding protein n=16 Tax=Mycoplasmataceae R... 93 3e-18 UniRef50_A9G6R4 SmpB-like protein n=1 Tax=Sorangium cellulosum '... 93 3e-18 UniRef50_A0M3P0 SsrA-binding protein n=13 Tax=Bacteroidetes RepI... 92 4e-18 UniRef50_C6HYH8 SsrA-binding protein n=1 Tax=Leptospirillum ferr... 92 5e-18 UniRef50_C2D8P0 TmRNA-binding protein n=2 Tax=Coriobacteriaceae ... 92 7e-18 UniRef50_C6SHY7 SsrA-binding protein n=1 Tax=Neisseria meningiti... 92 7e-18 UniRef50_Q7NB37 SsrA-binding protein n=1 Tax=Mycoplasma gallisep... 91 1e-17 UniRef50_Q02A69 SsrA-binding protein n=1 Tax=Candidatus Solibact... 91 1e-17 UniRef50_Q6KI26 SsrA-binding protein n=1 Tax=Mycoplasma mobile R... 91 1e-17 UniRef50_B1GZD8 SsrA-binding protein SmpB n=1 Tax=uncultured Ter... 90 3e-17 UniRef50_Q83N13 SsrA-binding protein n=2 Tax=Tropheryma whipplei... 89 6e-17 UniRef50_C6X237 TmRNA-binding protein SmpB n=2 Tax=Flavobacteria... 89 7e-17 UniRef50_P75043 SsrA-binding protein n=2 Tax=Mycoplasma RepID=SS... 87 2e-16 UniRef50_B7GAQ2 Predicted protein (Fragment) n=3 Tax=Bacillariop... 87 2e-16 UniRef50_A6L927 SsrA-binding protein n=17 Tax=Bacteria RepID=SSR... 85 6e-16 UniRef50_D1NAK5 SsrA-binding protein n=1 Tax=Victivallis vadensi... 85 9e-16 UniRef50_A5IZI0 SsrA-binding protein n=3 Tax=Mycoplasma RepID=SS... 83 3e-15 UniRef50_UPI0001912596 SsrA-binding protein n=1 Tax=Salmonella e... 82 6e-15 UniRef50_B3PM30 SsrA-binding protein n=2 Tax=Mycoplasma RepID=B3... 82 6e-15 UniRef50_B3EUI8 SsrA-binding protein n=4 Tax=Bacteroidetes RepID... 82 7e-15 UniRef50_Q601U1 SsrA-binding protein n=3 Tax=Mycoplasma hyopneum... 79 7e-14 UniRef50_C1D1M8 Putative SsrA-binding protein n=1 Tax=Deinococcu... 77 1e-13 UniRef50_A5KSW6 SsrA-binding protein n=2 Tax=candidate division ... 74 2e-12 UniRef50_A8Z637 SsrA (TmRNA)-binding protein n=2 Tax=Candidatus ... 68 1e-10 UniRef50_Q4A5T2 SsrA-binding protein n=2 Tax=Mycoplasma RepID=SS... 64 1e-09 UniRef50_Q7P475 Small protein B n=1 Tax=Fusobacterium nucleatum ... 62 8e-09 UniRef50_D0N0I1 Putative uncharacterized protein n=1 Tax=Phytoph... 58 9e-08 UniRef50_C7LKD3 SsrA (TmRNA)-binding protein n=1 Tax=Candidatus ... 49 5e-05 >UniRef50_B5F2A0 SsrA-binding protein n=362 Tax=Proteobacteria RepID=SSRP_SALA4 Length = 160 Score = 317 bits (812), Expect = 9e-86, Method: Compositional matrix adjust. Identities = 151/160 (94%), Positives = 157/160 (98%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANI DSYV+L+D Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 60 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 GEA+LFGAN TPMAVASTHVVCDPTRTRKLLLNQRELDSLYGR+NREGYTVVALSLYWKN Sbjct: 61 GEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRINREGYTVVALSLYWKN 120 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 AWCKVKIGVAKGKKQHDKRSD+KEREWQ+DKARIMKNA R Sbjct: 121 AWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKNAGR 160 >UniRef50_B0TLG2 SsrA-binding protein n=12 Tax=Proteobacteria RepID=SSRP_SHEHH Length = 164 Score = 204 bits (519), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 97/161 (60%), Positives = 125/161 (77%), Gaps = 3/161 (1%) Query: 1 MTKKKA--HKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLL 58 M KK A K SA+IA NKRA +Y EE+ EAGL+L GWEVKS+R GK N+S+SYV L Sbjct: 1 MAKKNAKNSKNSSASIARNKRATFDYKFEEKLEAGLSLMGWEVKSIRMGKVNLSESYVFL 60 Query: 59 RDGEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYW 118 R+GEA+LFG I P+ AS+HVVCDP R+RKLLL ++ELD L G V+R+GY++V +S+YW Sbjct: 61 REGEAYLFGCTIAPLNTASSHVVCDPLRSRKLLLKRKELDKLQGLVDRKGYSIVPISMYW 120 Query: 119 -KNAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNA 158 K AW K++IG+ KGKK+HDKR D K+REWQ++KAR +K A Sbjct: 121 QKGAWVKIEIGLGKGKKEHDKRDDTKDREWQIEKARTIKKA 161 >UniRef50_A1WX40 SsrA-binding protein n=13 Tax=Gammaproteobacteria RepID=SSRP_HALHL Length = 165 Score = 187 bits (474), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 87/153 (56%), Positives = 121/153 (79%) Query: 5 KAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAF 64 K+ K IALN++A ++F+EE EAGLAL+GWEVK+LRA + N+++S+VL+R GEA+ Sbjct: 10 KSKKTEGNVIALNRKAGFDFFVEERLEAGLALEGWEVKALRAKRVNLTESHVLVRRGEAW 69 Query: 65 LFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCK 124 L G NITP++ ASTH+ DPTRTRKLLL++RE++ L G V+R+GYTVV L LYWK K Sbjct: 70 LIGCNITPLSTASTHIHPDPTRTRKLLLHRREINRLIGAVDRDGYTVVPLKLYWKRGRAK 129 Query: 125 VKIGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157 ++IGVAKGKK+ DKR+D KE++WQ + R++K+ Sbjct: 130 IEIGVAKGKKKQDKRADKKEQDWQRQRERLLKH 162 >UniRef50_Q1LSR7 SsrA-binding protein n=17 Tax=Gammaproteobacteria RepID=SSRP_BAUCH Length = 161 Score = 179 bits (455), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 93/149 (62%), Positives = 123/149 (82%) Query: 12 ATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANIT 71 TI NKR R+EYFIE+EFEAG++L GWEVKSLRAG +I+DSY+LL+D EAFL GA + Sbjct: 13 TTITQNKRVRYEYFIEQEFEAGISLLGWEVKSLRAGIVHINDSYILLKDSEAFLLGATLR 72 Query: 72 PMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAK 131 P+ VAS+H++ P R+RKLLL +RELD+L G+V+R+GYT+V +SLYW+N+ K+++G+AK Sbjct: 73 PLIVASSHILYSPMRSRKLLLRRRELDTLLGKVHRKGYTIVPISLYWRNSLAKIQLGIAK 132 Query: 132 GKKQHDKRSDIKEREWQVDKARIMKNAHR 160 GKKQ+DKR IKEREW ++KARI K HR Sbjct: 133 GKKQYDKRHCIKEREWLLNKARITKLVHR 161 >UniRef50_Q3JBU6 SsrA-binding protein n=47 Tax=Proteobacteria RepID=SSRP_NITOC Length = 189 Score = 171 bits (432), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 77/144 (53%), Positives = 109/144 (75%) Query: 13 TIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITP 72 IALN++ARH+YFIEE +EAGL L+GWEVKSLRAG+ +++ Y LL+ GE +LFG +++P Sbjct: 15 VIALNRKARHDYFIEERYEAGLVLEGWEVKSLRAGRVQLNEGYCLLKGGEVWLFGVHLSP 74 Query: 73 MAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKG 132 + STH+ DP RTRKLLL+ +EL L G V R+GY ++ L+LYWK K++I +AKG Sbjct: 75 LNTVSTHIHPDPLRTRKLLLHAKELRKLIGAVERKGYALIPLTLYWKRGRVKLEIALAKG 134 Query: 133 KKQHDKRSDIKEREWQVDKARIMK 156 K+++DKR+ KE+EW K R++K Sbjct: 135 KQKYDKRATEKEKEWTRQKERLLK 158 >UniRef50_A1WPQ3 SsrA-binding protein n=5 Tax=Proteobacteria RepID=SSRP_VEREI Length = 157 Score = 165 bits (417), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 83/161 (51%), Positives = 114/161 (70%), Gaps = 5/161 (3%) Query: 1 MTKKKAHKPGSAT-IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLR 59 MTKK P A+ IA NK+A H+YF+EE +EAG+ L GWEVK+LRAGKA ++D YVL+R Sbjct: 1 MTKK----PDPASRIADNKKAAHDYFLEERYEAGMVLHGWEVKALRAGKAQLTDGYVLIR 56 Query: 60 DGEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK 119 DGE FL G + + ASTHV + RT+KLLL + ++ L G+V ++GYT+V L+L+WK Sbjct: 57 DGELFLLGCQLQALKTASTHVSPEAARTKKLLLKKDDIRRLIGKVEQKGYTLVPLNLHWK 116 Query: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 N K +I +A+GK QHDKR+ IKERE + + R +K+ R Sbjct: 117 NGVVKCEIALARGKAQHDKRNSIKEREGKREVERALKSRSR 157 >UniRef50_A5EXZ5 SsrA-binding protein n=4 Tax=Proteobacteria RepID=SSRP_DICNV Length = 159 Score = 163 bits (413), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 74/147 (50%), Positives = 111/147 (75%), Gaps = 1/147 (0%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPM 73 I NK+ H+YF+EE FEAG+AL+GWEVK++RAG+ I +SY+L++D + +LFGA I P+ Sbjct: 11 IVTNKKVFHDYFLEEHFEAGIALEGWEVKAVRAGRIQIKESYILVKDQQVYLFGALIHPL 70 Query: 74 AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGK 133 A AS+H+ + RTRKLLL++ ++ L G R+GYT++ +SLYWKN + KV + +AKGK Sbjct: 71 ASASSHIFPEAQRTRKLLLHRYQIAKLIGASERDGYTLMPVSLYWKNGFVKVDVAIAKGK 130 Query: 134 KQHDKRSDIKEREWQVDKARIMKNAHR 160 K+ DKR K+++W+ ++RIMK AH+ Sbjct: 131 KEFDKRQVKKDQDWKKTQSRIMK-AHK 156 >UniRef50_B8D947 SsrA-binding protein n=4 Tax=Buchnera aphidicola RepID=SSRP_BUCA5 Length = 162 Score = 159 bits (401), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 69/143 (48%), Positives = 105/143 (73%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPM 73 I +NK+A + YFIE+ F++GL L+GWE+KS+R+GK NIS+SY++ E +L I P+ Sbjct: 14 IIINKKAYYNYFIEKVFQSGLVLEGWEIKSIRSGKVNISESYIINDRNEMYLCNCLIEPL 73 Query: 74 AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGK 133 ++S CDPTR +KLLL++ E+D L + GYT+V+LSL+WK +WCK++ G+AKGK Sbjct: 74 QMSSNRFSCDPTRKKKLLLHKNEIDFLSLKKKNTGYTMVSLSLFWKKSWCKLEFGLAKGK 133 Query: 134 KQHDKRSDIKEREWQVDKARIMK 156 DKR ++K+REW+ +K +I+K Sbjct: 134 TAQDKRINLKKREWEQEKLKILK 156 >UniRef50_A1TSJ4 SsrA-binding protein n=6 Tax=Proteobacteria RepID=SSRP_ACIAC Length = 157 Score = 157 bits (397), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 78/156 (50%), Positives = 106/156 (67%), Gaps = 1/156 (0%) Query: 6 AHKPGSAT-IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAF 64 A KP + + IA NK+A YF EE EAG+ L GWEVK+LR GK ++D YV++R+GE + Sbjct: 2 AKKPETLSRIADNKKAAFNYFFEERHEAGMVLHGWEVKALREGKVQLTDGYVVIREGELY 61 Query: 65 LFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCK 124 L G I P+ ASTHV D RT+KLLL++ E+ L +V ++GYT+V L+L+W N K Sbjct: 62 LIGCQINPLKTASTHVSPDAVRTKKLLLHKDEIKRLTAKVEQKGYTLVPLNLHWTNGRAK 121 Query: 125 VKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 +I +AKGK +HDKR IKERE + + R MK+ HR Sbjct: 122 CEIALAKGKAEHDKRDTIKEREGKREVERAMKSRHR 157 >UniRef50_Q1H274 SsrA-binding protein n=29 Tax=Bacteria RepID=SSRP_METFK Length = 154 Score = 155 bits (393), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 69/144 (47%), Positives = 107/144 (74%) Query: 13 TIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITP 72 +IA NK+A H+YFIEE++EAG+ L+GWEVK++R + + ++YV+++ GE +L G ++TP Sbjct: 2 SIAQNKKAFHDYFIEEKYEAGIVLEGWEVKAIRENRVQLKEAYVIIQRGEIYLIGCHVTP 61 Query: 73 MAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKG 132 + ASTHV D RTRKLLL+ ++ L G+V R GYT+V L +++ KV+IG+AKG Sbjct: 62 LGSASTHVRPDAIRTRKLLLHSEQIAKLIGKVERAGYTLVPLDMHYTRGRIKVQIGLAKG 121 Query: 133 KKQHDKRSDIKEREWQVDKARIMK 156 KKQ+DKR KE++W+ +++ +MK Sbjct: 122 KKQYDKRHSEKEKDWKREQSSLMK 145 >UniRef50_Q12AT7 SsrA-binding protein n=8 Tax=Burkholderiales RepID=SSRP_POLSJ Length = 149 Score = 153 bits (387), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 73/147 (49%), Positives = 103/147 (70%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPM 73 IA NK+A Y IEE FEAG+ L+GWEVKS+R GK ++D YV++R GE F+ G I P+ Sbjct: 3 IADNKKAIFNYHIEERFEAGMVLEGWEVKSVREGKVQLTDGYVVIRGGELFIIGCQINPL 62 Query: 74 AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGK 133 ASTHV D RT+KLL+++ E+ L G+V ++G+T+V L+++WK K +IG+AKGK Sbjct: 63 GTASTHVRPDSVRTKKLLMHKDEIRRLVGKVEQKGFTLVPLNMHWKAGKVKCEIGLAKGK 122 Query: 134 KQHDKRSDIKEREWQVDKARIMKNAHR 160 +HDKR IK+RE + + R MK+ R Sbjct: 123 GEHDKRDTIKDREGKREVERAMKSRSR 149 >UniRef50_A5G3A5 SsrA-binding protein n=5 Tax=Bacteria RepID=SSRP_GEOUR Length = 151 Score = 147 bits (371), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 73/149 (48%), Positives = 107/149 (71%), Gaps = 5/149 (3%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPM 73 I NK+A H+YFIEE+FEAG+ L+G EVKSLR GKAN++DS+ L+++GEAFL +I+P Sbjct: 6 ICNNKKAYHDYFIEEKFEAGMVLKGTEVKSLRIGKANLNDSFALVKNGEAFLHNLHISPY 65 Query: 74 AVAS--THVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAK 131 + H DP R RKLLL+++E+ L+ + +GYTVV L LY+K+ KV++G+AK Sbjct: 66 DFGNRENH---DPDRMRKLLLHKKEIGKLFSMIREQGYTVVPLRLYFKDGLVKVEVGLAK 122 Query: 132 GKKQHDKRSDIKEREWQVDKARIMKNAHR 160 GKK +DKR D+K+++ + D A +K +R Sbjct: 123 GKKLYDKREDMKKKDMRRDVAVALKERNR 151 >UniRef50_B8H482 SsrA-binding protein n=83 Tax=Proteobacteria RepID=SSRP_CAUCN Length = 152 Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 77/147 (52%), Positives = 100/147 (68%), Gaps = 2/147 (1%) Query: 11 SATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANI 70 S IA N+RAR +YFIEE FEAG+ L G EVKSLR G+ANI++SY + E L A+I Sbjct: 2 SKPIAENRRARFDYFIEETFEAGIMLTGTEVKSLRTGRANIAESYASVEGREIVLINADI 61 Query: 71 TPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN-AWCKVKIGV 129 P A+ +P R RKLLL++R++D L G V REG T+V + LYW + K+++G+ Sbjct: 62 PPYGHAN-RFNHEPRRHRKLLLHRRQIDKLIGAVQREGRTLVPIKLYWNDKGLAKLEVGL 120 Query: 130 AKGKKQHDKRSDIKEREWQVDKARIMK 156 AKGKK HDKR ER+WQ DKAR+MK Sbjct: 121 AKGKKLHDKRDTAAERDWQRDKARLMK 147 >UniRef50_A5UPS2 SsrA-binding protein n=171 Tax=Bacteria RepID=SSRP_ROSS1 Length = 158 Score = 145 bits (366), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 71/148 (47%), Positives = 102/148 (68%) Query: 13 TIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITP 72 +A N++ARH+YFIEE +EAG+AL G E+KS+RAG+ N+ YV + DGEA+L+ +I P Sbjct: 10 VVADNRKARHDYFIEETYEAGIALTGSEIKSIRAGQVNLRGGYVRIVDGEAWLYDVHIAP 69 Query: 73 MAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKG 132 + + +PTR RKLLL++RE+ + G+V R+GYT+V L LY + KV+IG+A+G Sbjct: 70 YEQSGAYFNHEPTRPRKLLLHRREISRIAGQVERQGYTLVPLRLYLRGRRAKVEIGLARG 129 Query: 133 KKQHDKRSDIKEREWQVDKARIMKNAHR 160 KK +DKR DI RE + D R +K R Sbjct: 130 KKLYDKRDDIARREARRDIERALKERTR 157 >UniRef50_Q7VRQ2 TmRNA-binding protein n=2 Tax=Candidatus Blochmannia RepID=Q7VRQ2_BLOFL Length = 148 Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 70/146 (47%), Positives = 100/146 (68%), Gaps = 7/146 (4%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANI--- 70 I NKR H+YFIE+E E GL L GWEVKS+R+ K I +SYV LRD EA++ AN Sbjct: 3 IIQNKRVHHKYFIEKEIETGLVLLGWEVKSIRSRKITIENSYVSLRDQEAYMCNANFQIQ 62 Query: 71 TPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVA 130 T M V++ DPTR RKLLL ++EL L ++++ YT++ L+L+WKN+W K IG+A Sbjct: 63 TNMNVSTP----DPTRMRKLLLKKQELSFLTEIMHKKSYTIIILNLFWKNSWIKANIGIA 118 Query: 131 KGKKQHDKRSDIKEREWQVDKARIMK 156 KGKK++DKR + +W++++ I+K Sbjct: 119 KGKKKYDKRHIVNTHQWKLEQKHIIK 144 >UniRef50_Q2N9K0 SsrA-binding protein n=85 Tax=cellular organisms RepID=SSRP_ERYLH Length = 160 Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 74/146 (50%), Positives = 107/146 (73%), Gaps = 2/146 (1%) Query: 13 TIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITP 72 T+A N+RAR +Y +E++FEAG+ALQG EVK+LRAG+A+I++SY +RDGEA+L ANI P Sbjct: 14 TVAENRRARFDYAVEDKFEAGIALQGTEVKALRAGEASIAESYAEVRDGEAWLINANI-P 72 Query: 73 MAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN-AWCKVKIGVAK 131 + P R RKLLL+ RE++ L G V R+G T+V LS+Y+ + KV++ +AK Sbjct: 73 EYSHGNRLNHQPRRPRKLLLHNREIERLLGAVERKGMTLVPLSIYFNSRGRAKVELALAK 132 Query: 132 GKKQHDKRSDIKEREWQVDKARIMKN 157 G++ DKR IK+R+W+ DKARIM++ Sbjct: 133 GRQAQDKREYIKDRDWKRDKARIMRD 158 >UniRef50_Q3MAP3 SsrA-binding protein n=12 Tax=Cyanobacteria RepID=SSRP_ANAVT Length = 155 Score = 143 bits (361), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 72/145 (49%), Positives = 96/145 (66%) Query: 13 TIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITP 72 I N++AR+ Y I E FEAG+ L G EVKS+RAGK N+ D Y LLRDGE +L A+I+P Sbjct: 10 VITDNRQARYLYEILETFEAGIQLTGTEVKSIRAGKVNLQDGYALLRDGEIWLINAHISP 69 Query: 73 MAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKG 132 + + +P RTRKLLL+++E+ L G+V ++G T+V L +Y K W KV I + KG Sbjct: 70 YNASGQYFNHEPRRTRKLLLHRQEIRKLIGKVEQQGLTLVPLKMYLKRGWVKVSIALGKG 129 Query: 133 KKQHDKRSDIKEREWQVDKARIMKN 157 KK HDKR +K R+ Q D R MKN Sbjct: 130 KKLHDKRESLKRRQDQRDIQRAMKN 154 >UniRef50_UPI00016992A0 SsrA-binding protein n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI00016992A0 Length = 148 Score = 142 bits (358), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 61/105 (58%), Positives = 88/105 (83%) Query: 13 TIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITP 72 TIALNK+A+H+YFIEE +EAG+AL+GWEVKSLRAG+ N++++YV++ GEA+LFGANI+P Sbjct: 16 TIALNKKAKHDYFIEERYEAGVALEGWEVKSLRAGRINLTEAYVIINKGEAYLFGANISP 75 Query: 73 MAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLY 117 + S+H+ +PTR RKLLL++ EL+ L G V R+G+T+V ++Y Sbjct: 76 LPTVSSHIQPNPTRNRKLLLHRTELNKLIGLVERKGFTLVPTAMY 120 >UniRef50_A0PYP8 SsrA-binding protein n=125 Tax=Bacteria RepID=SSRP_CLONN Length = 157 Score = 139 bits (350), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 71/148 (47%), Positives = 99/148 (66%), Gaps = 1/148 (0%) Query: 13 TIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITP 72 T+A N++A H+YFIEE FEAG+AL G EVKS+R GKAN+ DSY +R+GE F+ +++P Sbjct: 10 TLAQNRKAYHDYFIEETFEAGIALVGTEVKSIRGGKANLKDSYASIRNGEVFVCNMHVSP 69 Query: 73 MAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKG 132 + DP R RKLLL++ ++++L G ++GYT++ LSLY KN KV +GVAKG Sbjct: 70 YEQGNI-FNRDPLRERKLLLHKSQINTLLGYTAQQGYTLIPLSLYLKNGRVKVALGVAKG 128 Query: 133 KKQHDKRSDIKEREWQVDKARIMKNAHR 160 KK +DKR I + + D R MK R Sbjct: 129 KKNYDKRDAIAAKAAKRDIDRQMKERMR 156 >UniRef50_Q89AM9 SsrA-binding protein n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=SSRP_BUCBP Length = 158 Score = 138 bits (348), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 63/156 (40%), Positives = 102/156 (65%), Gaps = 2/156 (1%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M + KP I +N++A++ + I+E FEAG+ L GWEVKS+R GK NIS+SY+ L++ Sbjct: 1 MKRNSNRKPNE--ICINRKAKYSFSIKETFEAGIVLLGWEVKSVRCGKINISNSYISLKN 58 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 GE +L + P++ ++ ++ + R +K+LL +RE+ LY ++ + T++ LS+++K Sbjct: 59 GEMYLVNSQFDPISKSNLYITYECNRIKKILLRKREITYLYSKLYKSHLTIIVLSIFFKK 118 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMK 156 WCKVKIG+AKGK DKR K EW+ + R +K Sbjct: 119 QWCKVKIGIAKGKTIKDKREHKKLSEWKKTQNRFVK 154 >UniRef50_B7IP12 SsrA-binding protein n=102 Tax=Bacteria RepID=SSRP_BACC2 Length = 155 Score = 136 bits (342), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 66/145 (45%), Positives = 98/145 (67%), Gaps = 1/145 (0%) Query: 13 TIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITP 72 IA NK+A H+YFIEE +EAGL LQG E+KS+RAG+ N+ D++ + +GE ++ +I Sbjct: 8 VIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARIHNGEVWVHNMHINT 67 Query: 73 MAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKG 132 DP RTRKLLL+++E+D L G GY +V L +Y KN + K+ +G+AKG Sbjct: 68 YE-QGNRFNHDPLRTRKLLLHKKEIDKLAGAAKETGYALVPLRIYLKNGFAKMALGLAKG 126 Query: 133 KKQHDKRSDIKEREWQVDKARIMKN 157 KKQ+DKR D+KE+E + + AR+ ++ Sbjct: 127 KKQYDKRHDLKEKEAKREIARVFRD 151 >UniRef50_A0FD64 TmRNA-binding protein n=1 Tax=Coxiella endosymbiont of Amblyomma americanum RepID=A0FD64_9COXI Length = 154 Score = 135 bits (341), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 61/135 (45%), Positives = 89/135 (65%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPM 73 I LNK+ H+Y+IE+ EAGL L+ WE+KS+RAG + +SYV+ + EA+L G + +P Sbjct: 9 IVLNKKTFHDYYIEQRLEAGLVLESWEIKSIRAGHIQLRNSYVIFKSREAWLIGVHCSPP 68 Query: 74 AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGK 133 + + HV DP R+RKLLLN+ E+D L V ++ TVV L L+W K ++ + +GK Sbjct: 69 SNIAYHVKPDPKRSRKLLLNKHEIDRLLSTVQKKRLTVVPLDLHWYKNHVKTEVALVRGK 128 Query: 134 KQHDKRSDIKEREWQ 148 + HDKR IK REW+ Sbjct: 129 RMHDKRETIKRREWE 143 >UniRef50_B2UY12 SsrA-binding protein n=24 Tax=Bacteria RepID=SSRP_CLOBA Length = 156 Score = 135 bits (339), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 69/153 (45%), Positives = 100/153 (65%), Gaps = 1/153 (0%) Query: 8 KPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFG 67 K S T+A N++ARHEYFIEE EAG+AL G EVKS+R G+AN+ +SY +R+GE F+ Sbjct: 4 KKSSNTLAENRKARHEYFIEETIEAGIALVGTEVKSIRNGRANLKESYADIRNGEIFILS 63 Query: 68 ANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKI 127 +I+P + V +P R +KLLL++ E+ L G V+R+GYT++ L+LY K KV + Sbjct: 64 MHISPYEQGNIFNV-EPLREKKLLLHKSEIHRLAGLVSRDGYTLIPLTLYLKAGKVKVAL 122 Query: 128 GVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 G+ KGKK +DKR + E+ + R +K R Sbjct: 123 GICKGKKDYDKRDSMLEKAHNREMQRALKERSR 155 >UniRef50_A9WJ45 SsrA-binding protein n=32 Tax=Bacteria RepID=SSRP_CHLAA Length = 160 Score = 134 bits (338), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 71/158 (44%), Positives = 100/158 (63%), Gaps = 2/158 (1%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 MT K PG +A N++ARH+Y IEE EAG+ L G E+KS+RAG+ N+ S+ + D Sbjct: 1 MTATKHKHPG--VVAENRKARHDYDIEETIEAGIVLSGSEIKSVRAGRVNLRGSFARVID 58 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 E FL+ A+I P + + DP R RKLLL++RE++ L G V +G T+V L +Y+K Sbjct: 59 DEVFLYDAHIAPYEQSGKYFNHDPMRPRKLLLHRREINRLNGLVRMKGMTLVPLKVYFKG 118 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNA 158 KV++GVA+GKK +DKR DI R+ D R +K A Sbjct: 119 RRAKVELGVARGKKIYDKREDIARRDAARDIDRALKRA 156 >UniRef50_Q72DV1 SsrA-binding protein n=12 Tax=Bacteria RepID=SSRP_DESVH Length = 154 Score = 134 bits (336), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 74/153 (48%), Positives = 94/153 (61%), Gaps = 4/153 (2%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M+KK PG+ IA NK+ARH Y + + EAG++L G EVKSLRAG N DSYV R+ Sbjct: 1 MSKKA---PGANVIAQNKKARHIYELSDNHEAGISLTGSEVKSLRAGHVNFRDSYVDFRN 57 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 GEAFL G +I P A + DP R RKLLL+ E+++L V ++GYTVV LY+ Sbjct: 58 GEAFLVGLHIAPYDNAG-YAQHDPDRDRKLLLHAHEIENLARSVEQKGYTVVPTKLYFAR 116 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKAR 153 KV I V +GKK HD+R D+K R D R Sbjct: 117 GKVKVDIAVGRGKKLHDQREDLKRRAEDRDTQR 149 >UniRef50_A8SP47 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A8SP47_9FIRM Length = 156 Score = 131 bits (329), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 66/151 (43%), Positives = 102/151 (67%), Gaps = 1/151 (0%) Query: 10 GSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGAN 69 G+ IA NK+A HEYFIEE+FEAG+ L G EVKS+R G +I +++V + GE +++ N Sbjct: 6 GNTLIANNKKAYHEYFIEEKFEAGIELVGTEVKSIRQGHCSIKEAFVGIDHGEVYVYRMN 65 Query: 70 ITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGV 129 + P + DP RTRKLLL++ E++ L G+ +GYT++ L +Y K+ K++IG+ Sbjct: 66 VNPYERGNI-FNKDPLRTRKLLLHRYEINKLIGQQKVKGYTIMPLKVYIKDGLVKMEIGL 124 Query: 130 AKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 AKGKK +DKR DI +++ + + R +KN +R Sbjct: 125 AKGKKLYDKREDIAKKDMKREMERDLKNRNR 155 >UniRef50_C9KNB2 SsrA-binding protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNB2_9FIRM Length = 157 Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 63/151 (41%), Positives = 99/151 (65%), Gaps = 1/151 (0%) Query: 10 GSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGAN 69 G T+ N++ARH+YFI E +EAG+ALQG EVKSLRAG+AN+ DSY +++GE F+ + Sbjct: 7 GIKTVCENRKARHDYFIHETYEAGIALQGTEVKSLRAGRANLKDSYASIQNGEIFVENLH 66 Query: 70 ITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGV 129 I+P + DP R RKLL+++ E+ L+ + +G+T+V L +Y+K K++I + Sbjct: 67 ISPYDQGNI-FNHDPLRRRKLLMHKAEIVKLFAKTREKGFTLVPLKIYFKQGRAKMEIAL 125 Query: 130 AKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 A GK +DKR D+ E+ + + R +K+ R Sbjct: 126 ASGKHNYDKRQDLHEKAAKREIERALKDRQR 156 >UniRef50_A9G109 SsrA-binding protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=SSRP_SORC5 Length = 162 Score = 129 bits (324), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 72/149 (48%), Positives = 99/149 (66%), Gaps = 5/149 (3%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M K+KA +PG IA NKRA Y + + FEAG+ L+G EVK LRAGKA+++DS+ + Sbjct: 1 MPKEKA-RPGETLIARNKRAGFNYDLGDRFEAGIVLKGSEVKMLRAGKADLTDSFCTVLR 59 Query: 61 GEAFLFGANITPMAVAS-THVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK 119 GE FL G +I MA A+ HV P RKLLL++RE++ + + REG T VA LY+K Sbjct: 60 GEVFLHGVSIAAMASAAFGHV---PKGARKLLLHRREIERIDLSIAREGMTAVATRLYFK 116 Query: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQ 148 + KV+I +A+GKK HDKR IKE++ + Sbjct: 117 SGLAKVEIALARGKKSHDKRETIKEQDAE 145 >UniRef50_C4Z0S0 SsrA-binding protein n=22 Tax=Bacteria RepID=C4Z0S0_EUBE2 Length = 164 Score = 128 bits (321), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 65/155 (41%), Positives = 98/155 (63%), Gaps = 1/155 (0%) Query: 5 KAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAF 64 K G+ IA NK+A +YFIEE++EAG+ L G EVKS+RAGK +I +SY+ + +GE + Sbjct: 8 KTSASGNRLIANNKKAYFDYFIEEKYEAGMVLHGTEVKSIRAGKCSIKESYIKIENGEVY 67 Query: 65 LFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCK 124 + G NITP + DP R +KLLL++ +++ L G + +GYT+V L +Y K K Sbjct: 68 VLGMNITPYEKGNI-FNKDPLRPKKLLLHKNQINKLTGELTIKGYTLVPLQVYLKEGKVK 126 Query: 125 VKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAH 159 ++IG+ KGKK DKR I +++ D + KN + Sbjct: 127 MEIGLGKGKKNFDKRDSIAKKDQIRDAQKEFKNKN 161 >UniRef50_B3DV24 TmRNA-binding protein n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DV24_METI4 Length = 152 Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 60/143 (41%), Positives = 98/143 (68%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPM 73 + +N+RAR +Y I + EAG+ L G EVKSL+AGK ++ ++ + +GEAFL+ NI+P Sbjct: 5 LVVNRRARKDYQILKTLEAGIVLLGSEVKSLKAGKGSLEGAFARVENGEAFLYQMNISPY 64 Query: 74 AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGK 133 A+++ + DP RKLLL+++E+ L G ++R+G T+V L LY++ KV +G+A G+ Sbjct: 65 EKAASYALRDPKAPRKLLLHKKEIGELAGAISRQGRTIVPLKLYFRRGKIKVLLGIASGR 124 Query: 134 KQHDKRSDIKEREWQVDKARIMK 156 + DKR IKE+E Q + +R++K Sbjct: 125 SKVDKREKIKEQETQREISRVLK 147 >UniRef50_C1F4B8 SsrA-binding protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F4B8_ACIC5 Length = 176 Score = 127 bits (318), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 64/137 (46%), Positives = 94/137 (68%), Gaps = 1/137 (0%) Query: 10 GSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGAN 69 G A N+ A H YF+ E++EAG+AL+G EVKS+R GKAN+ D+Y L++DGEAFL A+ Sbjct: 26 GERDAAQNRAASHNYFLLEKYEAGVALRGTEVKSIREGKANLKDAYGLIKDGEAFLLNAH 85 Query: 70 ITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGV 129 I P + + + + RTRKLLLNQ EL L+G+ ++G+T++ LY++N K ++ V Sbjct: 86 IGPYSHGN-YTNHEALRTRKLLLNQTELKKLWGKTQQKGFTLIPTRLYFRNGRVKCELAV 144 Query: 130 AKGKKQHDKRSDIKERE 146 AKGK+ DKR ++RE Sbjct: 145 AKGKQDWDKRETERKRE 161 >UniRef50_A9NF97 SsrA-binding protein n=1 Tax=Acholeplasma laidlawii PG-8A RepID=SSRP_ACHLI Length = 149 Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 66/147 (44%), Positives = 95/147 (64%), Gaps = 1/147 (0%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPM 73 I NK+A EYFIE++F AG+ LQG EVKS+RAGK +I+++Y+ R+GE F+ +I Sbjct: 4 ITQNKKAHFEYFIEQKFVAGIKLQGSEVKSIRAGKCSINEAYITFRNGEVFILNMHIAKF 63 Query: 74 AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGK 133 AS+ + TRTRKLLLN+ E+D L G R+G T++ L++ KV I +AKGK Sbjct: 64 D-ASSIFNHEETRTRKLLLNRSEIDKLMGAQTRDGMTIIPLTVELHEGLIKVVIALAKGK 122 Query: 134 KQHDKRSDIKEREWQVDKARIMKNAHR 160 K DKR IKER+ + ++ + +K R Sbjct: 123 KLFDKRETIKERDIKREQQQSLKGKMR 149 >UniRef50_B2V9T6 SsrA-binding protein n=7 Tax=Bacteria RepID=SSRP_SULSY Length = 152 Score = 126 bits (316), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 64/138 (46%), Positives = 95/138 (68%), Gaps = 5/138 (3%) Query: 13 TIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITP 72 +A NK+A H+Y I E++EAG+ L G EVKSLR G N+ DS+V++ DGEA+L+ I P Sbjct: 5 VVATNKKAFHDYAILEKYEAGIVLTGSEVKSLREGACNLKDSFVMIEDGEAWLYNCYIAP 64 Query: 73 MAVAST--HVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVA 130 A+ H DPTR RKLLL+++E+ L G+V +G T+V L +Y+KN KV+I +A Sbjct: 65 YKPAAKFGH---DPTRKRKLLLHKKEILKLMGKVKEKGLTIVPLRVYFKNGKAKVEIALA 121 Query: 131 KGKKQHDKRSDIKEREWQ 148 KGK +++KR +KE++ + Sbjct: 122 KGKVKYEKREAMKEKDMK 139 >UniRef50_A7HGZ0 SsrA-binding protein n=8 Tax=Bacteria RepID=SSRP_ANADF Length = 165 Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 64/133 (48%), Positives = 87/133 (65%), Gaps = 1/133 (0%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPM 73 +A N+RAR ++ IE+ +EAGL L G EVKSLR G N+SD+Y L R E FL I Sbjct: 20 VATNRRARFDFTIEDSWEAGLVLTGSEVKSLREGNVNLSDAYALPRGDELFLVNCRIGEY 79 Query: 74 AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGK 133 A+ H +P R RKLL+N+ ELD + G++ + GYT+V L LY+K W KV++G+AKG+ Sbjct: 80 KQAA-HFGHEPLRDRKLLMNRPELDRVKGKIEQRGYTLVPLRLYFKQGWAKVELGLAKGR 138 Query: 134 KQHDKRSDIKERE 146 D+R I ERE Sbjct: 139 SHEDRRHAIAERE 151 >UniRef50_A4J8T4 SsrA-binding protein n=14 Tax=Bacteria RepID=SSRP_DESRM Length = 161 Score = 125 bits (315), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 65/157 (41%), Positives = 99/157 (63%), Gaps = 2/157 (1%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M K + G TI N+RARHEY + E +EAG+AL G EVKSLRAGKAN+ D++ + + Sbjct: 1 MAAKATSEKGFKTITDNRRARHEYHVIETYEAGIALSGTEVKSLRAGKANLQDAFARVEN 60 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 GE L+ +I+P +P RTR+LL++++E+ LYG+V +G ++ L +Y+ Sbjct: 61 GEMMLYNLHISPYE-QGNRFNHEPKRTRRLLMHKQEILRLYGKVREKGLALIPLKVYFNP 119 Query: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMK 156 KV++ +A+GKK +DKR DI R+ + D R M+ Sbjct: 120 RGKVKVQLALAQGKKSYDKRHDIAARDAKRDMDRAMR 156 >UniRef50_Q04E23 SsrA-binding protein n=4 Tax=Lactobacillales RepID=SSRP_OENOB Length = 155 Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 67/159 (42%), Positives = 98/159 (61%), Gaps = 4/159 (2%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M KK H +A N+RA YFI E +EAG+ L G E+KS+R G+ I D+Y+ +RD Sbjct: 1 MAKKDKH---DDALARNRRASFNYFIGETYEAGIQLTGTEIKSVRLGQITIGDAYITVRD 57 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 +AFL ANI+P + V DP R RKLLL+++E+ +L V++EG T+V L +Y Sbjct: 58 QQAFLNNANISPYKQGNQFNV-DPLRRRKLLLHKKEILALDRAVSKEGKTIVPLRVYIVK 116 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAH 159 + K+ I + GKK +DKR IKER+ + + + +KN H Sbjct: 117 GFAKILIAIGTGKKNYDKRQTIKERDLKRELGKNLKNFH 155 >UniRef50_Q8D389 SmpB protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D389_WIGBR Length = 160 Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 70/154 (45%), Positives = 106/154 (68%) Query: 3 KKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGE 62 KKK + I+ NKRA++ +I++E EAGL+L+GWEVKSLR+ +IS SYV L+ Sbjct: 2 KKKNTEKNFLIISRNKRAKYNTYIKKEMEAGLSLKGWEVKSLRSNNISISTSYVTLKSSS 61 Query: 63 AFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAW 122 A+L GA + + + + R +LLL++ E++SL+G V +GY++V +SLYWK Sbjct: 62 AYLTGAVFQSNTNNNMNFIYEKERNIQLLLHKHEINSLFGYVKIKGYSIVVISLYWKYHK 121 Query: 123 CKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMK 156 K+KIG+AKGKK+ DKR +IK+REW++ K+R+ K Sbjct: 122 AKLKIGIAKGKKKIDKRLEIKKREWEIKKSRLFK 155 >UniRef50_Q2RLS9 SsrA-binding protein n=8 Tax=Clostridia RepID=SSRP_MOOTA Length = 155 Score = 123 bits (308), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 62/141 (43%), Positives = 93/141 (65%), Gaps = 2/141 (1%) Query: 17 NKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPMAVA 76 N+RARH+YFIEE +EAG+AL G EVKSLR G+ANI DSY + +GE L +I+P Sbjct: 11 NRRARHDYFIEETYEAGIALTGTEVKSLRNGRANIKDSYARVENGELILHDMHISPYE-Q 69 Query: 77 STHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYW-KNAWCKVKIGVAKGKKQ 135 +P R R+LL+++ E+ LYG+V +G T++ L +Y+ + KV++ + KGK+ Sbjct: 70 GNRFNHEPRRPRRLLMHRYEIQRLYGKVREKGLTLIPLKVYFNERGLAKVELALVKGKRL 129 Query: 136 HDKRSDIKEREWQVDKARIMK 156 +DKR DI R+ Q + AR ++ Sbjct: 130 YDKREDIAARDAQREIARALR 150 >UniRef50_A6G542 SsrA-binding protein n=2 Tax=Proteobacteria RepID=A6G542_9DELT Length = 159 Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 67/153 (43%), Positives = 96/153 (62%), Gaps = 6/153 (3%) Query: 10 GSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGAN 69 G + N++A H+Y I EE E+G+ALQG EVKS+R G+ ++ ++Y R E FL A+ Sbjct: 11 GDEVLEENRKATHDYEILEELESGVALQGSEVKSIRDGRISLKEAYCQFRGDELFLLQAH 70 Query: 70 IT--PMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKI 127 I P A A H P R RKLLL++RELD L+ V +G T+V L +Y K+ K+ I Sbjct: 71 IAEFPQAHARNH---PPLRARKLLLHRRELDKLHDAVKTQGLTIVPLVVYLKSRRIKILI 127 Query: 128 GVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 G+ +GKK HDKR+ IKER+ + + R ++ HR Sbjct: 128 GLGRGKKVHDKRAAIKERDQKREMQRALRE-HR 159 >UniRef50_A5FZS6 SsrA-binding protein n=11 Tax=Alphaproteobacteria RepID=SSRP_ACICJ Length = 159 Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 64/144 (44%), Positives = 93/144 (64%), Gaps = 2/144 (1%) Query: 15 ALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPMA 74 A N++AR Y I++ EAG+ L+G EVKSLR G+A +S+++ RDGE +LF I P Sbjct: 16 AQNRKARFNYTIKDTVEAGIVLRGAEVKSLRMGRATLSEAFAGERDGEMYLFNMYI-PEY 74 Query: 75 VASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK-NAWCKVKIGVAKGK 133 D RKLLL ++++D L G + R+G TVV L +++ KV +G+A+G+ Sbjct: 75 QGGVLSRFDTKGPRKLLLKRKQIDQLLGAIARQGSTVVPLDVHFNPRGLAKVTLGIAEGR 134 Query: 134 KQHDKRSDIKEREWQVDKARIMKN 157 KQHDKR I +R+W+ DKARI+KN Sbjct: 135 KQHDKRQAIAKRDWERDKARILKN 158 >UniRef50_Q057R8 TmRNA-binding protein n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057R8_BUCCC Length = 156 Score = 121 bits (304), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 52/135 (38%), Positives = 85/135 (62%) Query: 22 HEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPMAVASTHVV 81 + ++I+++F +G+ LQGWEVKS+RAG ISD +V++++ E +L P+ S Sbjct: 17 YNFYIKKKFISGIELQGWEVKSIRAGHVQISDGHVIIKNNEVYLTNVQFQPLIYTSDLKF 76 Query: 82 CDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGKKQHDKRSD 141 C R RKLLL ++E+ L ++GYT+V + L+W +WCK+KI + KGK + DKR D Sbjct: 77 CLSNRVRKLLLKKKEIFFLKMYSIKKGYTIVPIKLFWIKSWCKIKIALVKGKSKMDKRQD 136 Query: 142 IKEREWQVDKARIMK 156 + W++++ I K Sbjct: 137 KRNNSWKIERDTIFK 151 >UniRef50_Q6Q8U8 Predicted SsrA n=1 Tax=uncultured marine gamma proteobacterium EBAC20E09 RepID=Q6Q8U8_9GAMM Length = 156 Score = 121 bits (303), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 61/154 (39%), Positives = 96/154 (62%), Gaps = 3/154 (1%) Query: 8 KPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFG 67 K + I NK A + + E F+AG+ L+GWEVKSLR K ++ +SYV +R GEA+L G Sbjct: 3 KEKTVLIVKNKNASRNFKLNESFQAGIVLEGWEVKSLRDSKVDVKNSYVNIRKGEAWLIG 62 Query: 68 ANI-TPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVK 126 I P ++ ++ D T++RKLLL+++E+ + +G T V +YWK+ K Sbjct: 63 VKIDIPASLQQENI--DTTKSRKLLLHKKEIAKIERLKGEKGLTCVLTRIYWKDNLIKCD 120 Query: 127 IGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 I + +GKK D+R DIK+R+W+ D+ RI+KN+ + Sbjct: 121 IAMGQGKKHRDQREDIKKRDWERDQGRILKNSKK 154 >UniRef50_A8EWH6 SsrA-binding protein n=48 Tax=Epsilonproteobacteria RepID=SSRP_ARCB4 Length = 158 Score = 120 bits (302), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 95/142 (66%), Gaps = 1/142 (0%) Query: 17 NKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPMAVA 76 NK+A H++ I E EAG+ L+G EVK++R G+ N+ DS+V + GE FL A+I+ ++ Sbjct: 15 NKKAFHDFTILETLEAGIVLEGSEVKAIREGRVNLKDSFVRIIKGEVFLLNAHISHLSTT 74 Query: 77 STHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNA-WCKVKIGVAKGKKQ 135 + D R+RKLLL+ +++D +Y +V ++G T+VAL LY+ + K+++ A+GKK Sbjct: 75 HSTYRPDERRSRKLLLHSKQIDKMYSKVTKDGITLVALKLYFNDKNMIKIEVATAQGKKL 134 Query: 136 HDKRSDIKEREWQVDKARIMKN 157 HDKR D+K + + + +++K+ Sbjct: 135 HDKREDLKAKTMKRETEQVLKS 156 >UniRef50_A0LGB7 SsrA-binding protein n=7 Tax=Bacteria RepID=SSRP_SYNFM Length = 161 Score = 120 bits (300), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 70/160 (43%), Positives = 97/160 (60%), Gaps = 8/160 (5%) Query: 1 MTKKKAHKPGSAT----IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYV 56 MTK +KP +A I NK+A H+Y I E+FEAG+ L G EVKSLR G+AN+ DSY Sbjct: 1 MTK---NKPSTAEKTRLICQNKKAYHDYDILEKFEAGIVLLGTEVKSLREGRANLKDSYA 57 Query: 57 LLRDGEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSL 116 +R GE FL G +I+P AS + +P R RKLLL+ E+ L G+ G ++ L L Sbjct: 58 RVRKGEVFLQGLHISPYTHAS-YNNHEPERVRKLLLHAHEIKRLTGKTQERGLALIPLKL 116 Query: 117 YWKNAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMK 156 Y+ KV++ +A+GKK +DKR IK +E + R+ K Sbjct: 117 YFSKGKVKVELALAQGKKLYDKRESIKRKEENRELDRLRK 156 >UniRef50_A1KN98 SsrA-binding protein n=62 Tax=Bacteria RepID=SSRP_MYCBP Length = 160 Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 62/144 (43%), Positives = 95/144 (65%), Gaps = 1/144 (0%) Query: 5 KAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAF 64 K+ + G +A N++ARH Y I E FEAG+ALQG EVKSLR G+A+++DS+ + DGE + Sbjct: 3 KSSRGGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVW 62 Query: 65 LFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCK 124 L A+I P + +P R RKLLL++R++D+L G++ + +V LSLY+ K Sbjct: 63 LRNAHI-PEYRHGSWTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVK 121 Query: 125 VKIGVAKGKKQHDKRSDIKEREWQ 148 V++ +A+GK+ DKR D+ R+ Q Sbjct: 122 VELALARGKQARDKRQDMARRDAQ 145 >UniRef50_C7M112 SsrA-binding protein n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M112_ACIFD Length = 171 Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 64/148 (43%), Positives = 94/148 (63%), Gaps = 6/148 (4%) Query: 10 GSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGAN 69 G +A N+RARH+Y + E FEAG+ L G EVK++R G + D+Y +RDGE FLF A Sbjct: 16 GVRVLAQNRRARHDYDVLETFEAGIVLVGSEVKAVREGHVQLRDAYARIRDGELFLFQAV 75 Query: 70 ITPMAVAS---THVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVK 126 I+P A+ THV P RKLLL++ E+D L GR+ +E T++ LSLY ++ KV+ Sbjct: 76 ISPYRHATGFGTHVTDRP---RKLLLHRDEIDRLRGRLEQERLTLIPLSLYLRDGLVKVE 132 Query: 127 IGVAKGKKQHDKRSDIKEREWQVDKARI 154 + +AKG+ +DKR + R+ Q + R+ Sbjct: 133 LALAKGRTLYDKRHVLATRDAQREVERL 160 >UniRef50_D1U5X0 SsrA-binding protein n=2 Tax=Desulfovibrio RepID=D1U5X0_9DELT Length = 158 Score = 119 bits (299), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 67/160 (41%), Positives = 93/160 (58%), Gaps = 2/160 (1%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M KKK+ TI NK+AR Y I E FEAG++L G EVKSLR G D YV RD Sbjct: 1 MAKKKS-TTTPDTIGTNKQARRLYDILETFEAGISLLGSEVKSLRGGHVAFKDGYVQFRD 59 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 AFL G +I P + DP R R+LLL++RE+ L + +++G TV+ + +Y+ Sbjct: 60 HSAFLVGVHIAPYEKTGEYDQHDPERPRQLLLHKREILVLKAKSDQKGLTVIPMKMYFSR 119 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 KV IG+ KGK H ++ D+K+R+ D AR + + HR Sbjct: 120 GKIKVLIGLGKGKNVHSRKQDLKDRDIARDTARQLAD-HR 158 >UniRef50_Q1GDQ2 SsrA-binding protein n=12 Tax=Rhodobacterales RepID=SSRP_SILST Length = 158 Score = 119 bits (299), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 67/158 (42%), Positives = 99/158 (62%), Gaps = 3/158 (1%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M K+K P IA N+RAR +Y IE++ E G+ L+G EVKSLRAG +NI++SY + + Sbjct: 1 MAKQKTD-PNYKVIAENRRARFDYAIEQDLECGIMLEGSEVKSLRAGGSNIAESYAAVEE 59 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 GE +L + I P A + R RKLL++++E+ L+ R+G T+V L LY+ + Sbjct: 60 GELWLVNSYIAPYEQAKV-FKHEERRRRKLLVSRKEMADLWNATQRKGMTLVPLVLYFNH 118 Query: 121 -AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157 K+KIG+AKGKK HDKR +R+W K R++K+ Sbjct: 119 RGMAKIKIGIAKGKKNHDKREAQAKRDWSRQKQRLLKD 156 >UniRef50_D2RBT7 SsrA-binding protein n=3 Tax=Bacteria RepID=D2RBT7_GARVA Length = 165 Score = 119 bits (298), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 70/155 (45%), Positives = 104/155 (67%), Gaps = 5/155 (3%) Query: 6 AHKP---GSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLL-RDG 61 A+KP G+ T+A N++A H+Y IE+ +EAGLAL G EVKSLR G+A++++S+V + R G Sbjct: 2 ANKPAQDGTVTVAQNRKAHHDYVIEDCYEAGLALTGTEVKSLREGRASLAESFVNIDRRG 61 Query: 62 EAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNA 121 E +L GANI P + T P R RKLLL+ E+ L + +GYTVV L LY+K + Sbjct: 62 EMWLEGANI-PEYLNGTWNNHAPKRKRKLLLHAAEIAKLSRQTEAKGYTVVPLRLYFKGS 120 Query: 122 WCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMK 156 + KV+I +A+GKK+ DKR ++E + + + R M+ Sbjct: 121 YVKVEIALARGKKEFDKRQALREEQDKREALREMR 155 >UniRef50_A9BF44 SsrA-binding protein n=3 Tax=Bacteria RepID=SSRP_PETMO Length = 150 Score = 119 bits (298), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 63/138 (45%), Positives = 90/138 (65%), Gaps = 2/138 (1%) Query: 12 ATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANIT 71 T+A NK+A H+Y I E FEAG++L G EVKS +AGK N DS+ + GE L+ +I+ Sbjct: 2 TTLARNKKATHDYEIIETFEAGISLLGTEVKSSKAGKINFKDSFCKIEKGELILYNVHIS 61 Query: 72 PMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN-AWCKVKIGVA 130 P + AS DP R RKLLL+++E+ L +V +EG T++ L +Y N KVKI +A Sbjct: 62 PYSGASI-FNHDPERPRKLLLHKKEIRRLQSKVQQEGLTMIPLEIYTNNKGLIKVKIALA 120 Query: 131 KGKKQHDKRSDIKEREWQ 148 KG K++DKR I E+E++ Sbjct: 121 KGLKKYDKREKIAEKEYE 138 >UniRef50_Q2GCW3 SsrA-binding protein n=2 Tax=Neorickettsia RepID=SSRP_NEOSM Length = 147 Score = 119 bits (297), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 65/144 (45%), Positives = 98/144 (68%), Gaps = 6/144 (4%) Query: 13 TIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITP 72 IA+NK+AR +Y + +EFEAG+ L G EVK+L+ A++++++V R E +L ++ P Sbjct: 3 VIAINKKARFDYSLIDEFEAGIVLLGTEVKALKYHSASLNEAFVAFRRFELWLNNMHVPP 62 Query: 73 MAVAS--THVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYW-KNAWCKVKIGV 129 AS HV PTR+RKLL+++R+L+ + G V +G T+V LS+Y +N KVK + Sbjct: 63 YKPASRFNHV---PTRSRKLLVHKRQLNKISGAVRTKGLTLVPLSIYVNENGLIKVKFAL 119 Query: 130 AKGKKQHDKRSDIKEREWQVDKAR 153 AKGKK+HDKR DIK+R+W +AR Sbjct: 120 AKGKKKHDKRQDIKDRDWARKQAR 143 >UniRef50_B2ULK9 SsrA-binding protein n=3 Tax=Verrucomicrobia RepID=B2ULK9_AKKM8 Length = 152 Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 62/148 (41%), Positives = 94/148 (63%), Gaps = 4/148 (2%) Query: 11 SATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANI 70 S+ I+ NK+AR +Y I + +E G+ L+G EVKS+RAGK NI+DS+ + +G+ L+G +I Sbjct: 2 SSDISTNKKARRDYEILDTYECGMELKGTEVKSIRAGKVNIADSFARVENGQMLLYGCDI 61 Query: 71 TPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVA 130 P A R R+LLL++RE+ L + +++G ++VAL LYWKN K+ +G+ Sbjct: 62 QPWETAGEFFQHQARRPRRLLLHKREIFKLEQQTSQKGCSLVALKLYWKNGKVKLALGLG 121 Query: 131 KGKKQHDKRSDIKE----REWQVDKARI 154 KGK D+R D+K RE Q + ARI Sbjct: 122 KGKTHRDQRYDLKARVEMREAQREVARI 149 >UniRef50_Q1MRU5 SsrA-binding protein n=5 Tax=Desulfovibrionales RepID=SSRP_LAWIP Length = 155 Score = 118 bits (295), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 63/152 (41%), Positives = 96/152 (63%), Gaps = 1/152 (0%) Query: 8 KPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFG 67 K S + N++ARH Y + + EAG+ L G EVKSLR+G A+ DSYV + GE ++ G Sbjct: 4 KKNSHLVFENRKARHLYDLLDFLEAGIVLTGPEVKSLRSGHASFQDSYVDFKQGEGYIVG 63 Query: 68 ANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKI 127 +I P A +V+ +P R RKLLL+++EL L +V ++G T+V L LY+KN K +I Sbjct: 64 LHIPPYNNAG-YVIQNPDRPRKLLLHRQELKMLASKVEQKGLTIVPLKLYFKNRKVKTEI 122 Query: 128 GVAKGKKQHDKRSDIKEREWQVDKARIMKNAH 159 +AKG+K +D R+++K+R +D R + H Sbjct: 123 ALAKGRKLYDHRNELKKRAEAMDIKRELAARH 154 >UniRef50_Q03AJ7 SsrA-binding protein n=110 Tax=Bacteria RepID=SSRP_LACC3 Length = 157 Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 65/156 (41%), Positives = 98/156 (62%), Gaps = 2/156 (1%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M KK KP + +A NK+A H+Y I + +EAG+AL G E+KS+R GK N+ D + +R+ Sbjct: 1 MAKKHRQKPDN-LLAQNKKAGHDYNILDTYEAGIALTGTEIKSVRDGKLNLRDGFARIRN 59 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 EA+L +I+P + V DP R RKLLL++RE+ L R+G T+V L +Y K+ Sbjct: 60 NEAWLENVHISPYKEGNLFNV-DPMRNRKLLLHKREIRKLGQMTARQGVTLVPLRMYLKH 118 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMK 156 + KV IGVA+GK +DKR +K ++ + + R +K Sbjct: 119 GYAKVLIGVAEGKHNYDKRETLKRKDQEREVQRALK 154 >UniRef50_Q2S237 SsrA-binding protein n=1 Tax=Salinibacter ruber DSM 13855 RepID=SSRP_SALRD Length = 154 Score = 117 bits (293), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 62/135 (45%), Positives = 89/135 (65%), Gaps = 2/135 (1%) Query: 10 GSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLL-RDGEAFLFGA 68 G+ +A NK+A+ EY IEE EAGL L+G EVKS+R GKA++ +Y + R+GE + G Sbjct: 4 GTEVVARNKKAQFEYDIEETLEAGLVLEGSEVKSVRQGKASLDGAYCQVDREGEMKIHGM 63 Query: 69 NITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIG 128 I P A +P R RKLLL+ +++ +EGYT+V LSLY+++ W K+KIG Sbjct: 64 YIKPYEEAGP-FGHEPRRNRKLLLHDQQIGKWGQMAEQEGYTIVPLSLYFRDGWAKLKIG 122 Query: 129 VAKGKKQHDKRSDIK 143 +AKG+++HDKR IK Sbjct: 123 IAKGRQKHDKRQAIK 137 >UniRef50_C1ZDG5 SsrA-binding protein n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZDG5_PLALI Length = 160 Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 59/144 (40%), Positives = 91/144 (63%), Gaps = 5/144 (3%) Query: 2 TKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDG 61 +K + KP + ++ N+RARHEY + ++ + G+ L G EVKS+RAGK +I +++V ++DG Sbjct: 5 SKPEDDKPNNISVCRNRRARHEYELMDQLDCGIVLMGSEVKSIRAGKVSIEEAWVRVQDG 64 Query: 62 EAFLFGANIT--PMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK 119 E +L G +I P A H + RTRKLL ++REL GR + T+V L +Y + Sbjct: 65 ELYLVGCDINEYPQASWLNH---ETKRTRKLLAHRRELKKFCGRTSERSITIVPLEMYLQ 121 Query: 120 NAWCKVKIGVAKGKKQHDKRSDIK 143 + K+KI +AKG+K HDKR +K Sbjct: 122 RGFVKIKIALAKGRKLHDKREKLK 145 >UniRef50_C0QVL0 SsrA-binding protein n=2 Tax=Brachyspira RepID=C0QVL0_BRAHW Length = 161 Score = 116 bits (291), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 65/161 (40%), Positives = 94/161 (58%), Gaps = 6/161 (3%) Query: 1 MTKKKAHKPGSATIAL-----NKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSY 55 M KK K GS TI+ NK+A Y + E+FEAG+ L G EVKSLR N+SDSY Sbjct: 1 MASKKDKKSGSNTISSGEIVKNKKALFNYELVEKFEAGIVLLGTEVKSLRERSVNMSDSY 60 Query: 56 VLLRDGEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALS 115 + GE F+ +I+P + + +P R RKLL+ +REL LYG++ +G T++ + Sbjct: 61 ASFKKGELFIVNMHISPYHFGNRNN-HEPLRERKLLMKKRELRRLYGKIKEQGLTLIPVK 119 Query: 116 LYWKNAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMK 156 LY+ KV++ +AKGKK HDKR +K + + R +K Sbjct: 120 LYFSRGKVKVELALAKGKKLHDKRETLKRKTLDREMERYIK 160 >UniRef50_Q4JX42 SsrA-binding protein n=87 Tax=Bacteria RepID=SSRP_CORJK Length = 184 Score = 116 bits (290), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 63/148 (42%), Positives = 95/148 (64%), Gaps = 5/148 (3%) Query: 10 GSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGAN 69 G +A N++ARH+Y I + +E G+ L G EVKSLR GKA++ D+Y + +GE +L G + Sbjct: 31 GQIVVATNRKARHDYHIIDTYECGVVLVGTEVKSLREGKASLVDAYATIDEGEVWLRGLH 90 Query: 70 ITPMAVA--STHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKI 127 I ++ + H P RTRKLLL++RE+DSL G+V T+V L LY+ KV++ Sbjct: 91 IPEYSMGHWTNH---SPRRTRKLLLHRREIDSLMGKVRDGNNTLVPLQLYFVAGKLKVEL 147 Query: 128 GVAKGKKQHDKRSDIKEREWQVDKARIM 155 +A+GK+++DKR DIK R + + R M Sbjct: 148 ALARGKQEYDKRQDIKRRTEEREITREM 175 >UniRef50_D1BK11 SsrA-binding protein n=20 Tax=Bacteria RepID=D1BK11_SANKS Length = 176 Score = 115 bits (287), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 61/138 (44%), Positives = 93/138 (67%), Gaps = 1/138 (0%) Query: 9 PGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGA 68 P A IA NK+ARH++ IE+ FEAG+ L G EVK+LRAG+A++ D YV + EA+L GA Sbjct: 25 PVRALIASNKKARHDFAIEDVFEAGMVLSGTEVKALRAGRASLVDGYVNIEGNEAWLEGA 84 Query: 69 NITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIG 128 +I+ A T P R RKLLL++ E++ L +G+T+V L +Y+ + KV+I Sbjct: 85 HISEYA-HGTWTNHAPRRKRKLLLHRSEIERLAQGTREKGFTIVPLQMYFLDGRAKVEIA 143 Query: 129 VAKGKKQHDKRSDIKERE 146 +A+GKK++DKR ++E++ Sbjct: 144 LARGKKEYDKRQTLREQQ 161 >UniRef50_C0JZT0 SsrA-binding protein n=1 Tax=uncultured bacterium URE12 RepID=C0JZT0_9BACT Length = 163 Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 62/147 (42%), Positives = 89/147 (60%), Gaps = 1/147 (0%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPM 73 IA N++ARH+Y IE+ EAGLAL+G EVKSLR I+ ++ + +L+G I+P Sbjct: 17 IATNRKARHDYLIEDTIEAGLALEGPEVKSLRLKHCVITSAFARVEPRGVYLYGMQISPY 76 Query: 74 AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGK 133 A +T DP RTRKLLL + E+ L V +G +VAL +Y+K W KV IG+ +GK Sbjct: 77 AF-NTLTQLDPVRTRKLLLKKTEIRRLSRAVEIKGMALVALEVYFKRGWAKVLIGLGRGK 135 Query: 134 KQHDKRSDIKEREWQVDKARIMKNAHR 160 K DK+ IK+R+ + R K ++ Sbjct: 136 KAADKKETIKKRDIDREMRRDFKEKYK 162 >UniRef50_B7KVC8 SsrA-binding protein n=25 Tax=cellular organisms RepID=SSRP_METC4 Length = 157 Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 66/150 (44%), Positives = 96/150 (64%), Gaps = 2/150 (1%) Query: 9 PGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGA 68 PG +A N+ AR+ Y IE+ EAG+AL G EVKSLR GKA I +SY + LF A Sbjct: 7 PGRRVVADNRSARYHYAIEDTLEAGIALTGTEVKSLRGGKATIGESYAGPSGNDLMLFNA 66 Query: 69 NITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN-AWCKVKI 127 I P + + D R R+LLL++R+++ L G R+GYTV+ L +Y+ + KV++ Sbjct: 67 YI-PEYLEANRFNHDTKRPRRLLLHRRQINKLIGATQRQGYTVIPLKIYFNDKGRAKVEL 125 Query: 128 GVAKGKKQHDKRSDIKEREWQVDKARIMKN 157 G+ KGK+ HDKR +K+R+W DKAR+M++ Sbjct: 126 GLGKGKQLHDKRESVKQRDWDRDKARLMRD 155 >UniRef50_Q7UZP2 SsrA-binding protein n=33 Tax=cellular organisms RepID=SSRP_PROMP Length = 175 Score = 114 bits (284), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 56/130 (43%), Positives = 78/130 (60%) Query: 17 NKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPMAVA 76 N+ A+ +Y I E EAG+ L G EVKS+R G N+ D Y RDGE L +I+P Sbjct: 35 NRYAKFQYEILETIEAGIELLGTEVKSIRNGSVNLRDGYCSFRDGEILLLNVHISPHKNV 94 Query: 77 STHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGKKQH 136 DP R RKLLL+++E+ L ++G T++ LS+Y K +W K+ IG+ KGKK H Sbjct: 95 GPFFNHDPLRNRKLLLHKKEIVKLKYNTEKKGLTIIPLSIYLKGSWIKLTIGIGKGKKLH 154 Query: 137 DKRSDIKERE 146 DKR K+R+ Sbjct: 155 DKRQADKQRD 164 >UniRef50_C5JAN1 SsrA-binding protein n=1 Tax=uncultured bacterium RepID=C5JAN1_9BACT Length = 153 Score = 114 bits (284), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 61/147 (41%), Positives = 96/147 (65%), Gaps = 4/147 (2%) Query: 13 TIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYV--LLRDGEAFLFGANI 70 IALNK A+ +Y + E EAG+ L G+EVKS R G +I +S+V + GE +LF AN Sbjct: 5 VIALNKLAKFDYSLLEVIEAGIVLTGFEVKSARLGGISIRESHVGEMQGSGELYLFNANF 64 Query: 71 TPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYW-KNAWCKVKIGV 129 P + +T + +P R RKLLL +R+++ L G+V+R+G+T++ + +Y+ + K++I + Sbjct: 65 -PEYIHATTMKQEPKRPRKLLLGRRQINKLLGQVHRKGFTIIPVQMYFNEKGIIKIEIAL 123 Query: 130 AKGKKQHDKRSDIKEREWQVDKARIMK 156 A+GK DKR IK REW +K R++K Sbjct: 124 AQGKNVVDKRETIKLREWDREKHRVLK 150 >UniRef50_A3PWV5 SsrA-binding protein n=83 Tax=cellular organisms RepID=SSRP_MYCSJ Length = 168 Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 58/134 (43%), Positives = 88/134 (65%), Gaps = 1/134 (0%) Query: 13 TIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITP 72 +A N+RARH Y I + +EAG+AL G EVKSLR G+A+++D++ + DGE +L +I P Sbjct: 19 VVASNRRARHNYAILDTYEAGIALMGTEVKSLRDGQASLADAFATVDDGEIWLRNLHI-P 77 Query: 73 MAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKG 132 + P R RKLLL++RE+D+L G++ T+V LSLY+ KV++ +A+G Sbjct: 78 EYQHGSWTNHAPRRNRKLLLHRREIDNLIGKIRDGNLTLVPLSLYFTGGKVKVELALARG 137 Query: 133 KKQHDKRSDIKERE 146 K+ HDKR D+ R+ Sbjct: 138 KQAHDKRQDLARRD 151 >UniRef50_B1MEU3 SsrA-binding protein n=68 Tax=Bacteria RepID=SSRP_MYCA9 Length = 159 Score = 112 bits (279), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 63/146 (43%), Positives = 92/146 (63%), Gaps = 3/146 (2%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M+KK A G IA N++ARH Y I + +EAG+ L G EVK+LR GKA++ D++ + D Sbjct: 1 MSKKPA--DGRKVIATNRKARHNYSIIDVYEAGVQLVGTEVKTLREGKASLVDAFATVDD 58 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 GE +L G +I P T P R RKLLL++ ++D L G+ T+V LSLY+ + Sbjct: 59 GEVWLRGVHI-PQYDHGTWTNHAPLRNRKLLLHRAQIDMLVGKTRDGNLTLVPLSLYFLD 117 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKERE 146 KV++ +A+GK+ HDKR DI +R+ Sbjct: 118 GKVKVELALARGKQAHDKRQDIAKRD 143 >UniRef50_A0QU63 SsrA-binding protein n=25 Tax=Bacteria RepID=SSRP_MYCS2 Length = 161 Score = 111 bits (278), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 59/150 (39%), Positives = 95/150 (63%), Gaps = 6/150 (4%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 MTKK A + +A N++ARH Y I + +EAG+ L G EVKSLR G+A+++D++ + D Sbjct: 1 MTKKSA-SSNNKVVATNRKARHNYTILDTYEAGIVLMGTEVKSLREGQASLADAFATVDD 59 Query: 61 GEAFLFGANITPM--AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYW 118 GE +L +I + H P R RKLLL+++++D+L G++ T+V LS+Y+ Sbjct: 60 GEIWLRNVHIAEYHHGTWTNHA---PRRNRKLLLHRKQIDNLIGKIRDGNLTLVPLSIYF 116 Query: 119 KNAWCKVKIGVAKGKKQHDKRSDIKEREWQ 148 + KV++ +A+GK+ HDKR D+ R+ Q Sbjct: 117 TDGKVKVELALARGKQAHDKRQDLARRDAQ 146 >UniRef50_Q3ZZ31 SsrA-binding protein n=6 Tax=Bacteria RepID=SSRP_DEHSC Length = 172 Score = 111 bits (278), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 95/150 (63%), Gaps = 1/150 (0%) Query: 7 HKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLF 66 H T+ N++A H YF+EE++EAG+ L G E+KSLR+G+ N+ D+YV + GE +L Sbjct: 18 HMAEYVTLTTNRKAFHNYFLEEKYEAGIMLLGTEIKSLRSGRVNMGDAYVKPQRGELWLV 77 Query: 67 GANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVK 126 A+I+ S H +P R RKLL++++E+ L +V +G T++ + +Y KN KV+ Sbjct: 78 NAHISAYE-CSGHTSHEPMRERKLLMHRKEIALLMSKVKEKGLTLIPVRIYLKNDIAKVE 136 Query: 127 IGVAKGKKQHDKRSDIKEREWQVDKARIMK 156 + + +GKK +DKR + +R+ + + R +K Sbjct: 137 LSLGRGKKLYDKRDTVTKRDTERELEREVK 166 >UniRef50_C8W8A6 SsrA-binding protein n=5 Tax=Coriobacteriaceae RepID=C8W8A6_ATOPD Length = 161 Score = 111 bits (278), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 62/161 (38%), Positives = 99/161 (61%), Gaps = 2/161 (1%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M + + + G +IA N+ ARHEY I E FE GL L G EVKSLR ++D++ L+RD Sbjct: 1 MAENQVKQQGKKSIARNRSARHEYEIGETFECGLVLTGTEVKSLRERGCQLTDTFCLIRD 60 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYW-K 119 GEA++ G ++ P V DP R RKLLL++R++D L G++ ++G +V L +Y+ + Sbjct: 61 GEAWIHGMHLHPYTNGGVWNV-DPDRKRKLLLHRRQIDYLDGKLRQKGLALVPLEIYFDE 119 Query: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 + K+ I +++GKK +DKR+ +R+ + R +K R Sbjct: 120 HNRVKLLIALSQGKKLYDKRASAAKRDSDREIQRALKERSR 160 >UniRef50_B2KCF8 SsrA-binding protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=SSRP_ELUMP Length = 157 Score = 111 bits (277), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 54/148 (36%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 10 GSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGAN 69 G A N++A H Y I + +EAG+ L G EVKS+R + ++ ++V + +A++F + Sbjct: 7 GPLVAATNRKAYHNYHILDTYEAGIELLGSEVKSIRKKEVSLDGAFVRIEGMQAYVFNMH 66 Query: 70 ITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGV 129 I P +T +P R R+LLLN++E++ L G +G+T++ L +Y+KN W K+K+G+ Sbjct: 67 INPYKY-NTVTEVEPLRQRRLLLNKKEINKLKGHAEIKGHTIIPLEVYFKNGWAKIKVGL 125 Query: 130 AKGKKQHDKRSDIKEREWQVDKARIMKN 157 KGK+ DKR IK+R+ + + KN Sbjct: 126 GKGKQLFDKRDAIKKRDLSREMEKDFKN 153 >UniRef50_Q6MQ46 SsrA-binding protein n=1 Tax=Bdellovibrio bacteriovorus RepID=SSRP_BDEBA Length = 152 Score = 110 bits (275), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 59/132 (44%), Positives = 83/132 (62%), Gaps = 5/132 (3%) Query: 17 NKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPMAVA 76 NK+AR +Y I E +EAGL L G EVKSLR + DSY+ + EA+L A+I + Sbjct: 11 NKKARFDYTIVETYEAGLQLMGSEVKSLRNKDVQLKDSYISFKGDEAYLQNAHIAEYKAS 70 Query: 77 S--THVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGKK 134 S HV P R RKLL+++ ELD ++ + +GY+ V L +Y+KN K++I + KGKK Sbjct: 71 SYNNHV---PERHRKLLMHRNELDEIFEALREKGYSCVPLKIYFKNGRAKLQIALVKGKK 127 Query: 135 QHDKRSDIKERE 146 HDKR IK+R+ Sbjct: 128 THDKREAIKKRD 139 >UniRef50_C7JH78 Trans-translation helper factor SmpB n=8 Tax=Acetobacter pasteurianus RepID=C7JH78_ACEP3 Length = 168 Score = 109 bits (272), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 59/147 (40%), Positives = 91/147 (61%), Gaps = 2/147 (1%) Query: 12 ATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANIT 71 +A N++AR Y I E EAGL L+G EVKSLR G+A I++++ RDG +LF + I Sbjct: 17 GMVAQNRKARFNYNILETIEAGLVLKGAEVKSLRLGRATINEAFAGERDGALWLFNSYI- 75 Query: 72 PMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN-AWCKVKIGVA 130 P D RKLL++++E+ G + ++G T+V L++++ + KV +G+ Sbjct: 76 PEYQGGVLSRFDTRAPRKLLMHRKEMRKFIGAIAKQGATLVPLNVHFNDRGLAKVTLGLG 135 Query: 131 KGKKQHDKRSDIKEREWQVDKARIMKN 157 GKK HDKR I +R+WQ DKAR+++N Sbjct: 136 VGKKSHDKRQSIADRDWQRDKARLIRN 162 >UniRef50_C8PPG5 SsrA-binding protein n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PPG5_9SPIO Length = 200 Score = 108 bits (271), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 60/140 (42%), Positives = 86/140 (61%), Gaps = 1/140 (0%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPM 73 IA NK+A +Y IEE E G+ALQG E+KS+R G+ + DS+ + E +L +I+ Sbjct: 55 IAKNKKAHFDYSIEETIECGIALQGTEIKSVRDGRISFPDSFAEIIRNEVWLKNFHISEY 114 Query: 74 AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGK 133 V S+ DP R +KLLL++ E+ L + +GYT++ L Y K KV +G+ KGK Sbjct: 115 -VYSSIFNHDPDRPKKLLLHKDEIKRLTRKTEEKGYTLIPLEFYLKRGRIKVMLGICKGK 173 Query: 134 KQHDKRSDIKEREWQVDKAR 153 KQ DKR+DIKER+ + D R Sbjct: 174 KQFDKRADIKERDIKRDMQR 193 >UniRef50_Q2ST23 SsrA-binding protein n=4 Tax=Mollicutes RepID=SSRP_MYCCT Length = 148 Score = 107 bits (267), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 50/135 (37%), Positives = 87/135 (64%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPM 73 I NK+A Y I + ++AG+ L G E+KS+R +I++++VL+R E ++ N+ Sbjct: 6 IVKNKKAYFNYEIIQTYQAGIVLNGPEIKSIRNHDVSINEAFVLIRKKEIYILNMNVKKY 65 Query: 74 AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGK 133 A+ + TRTRKLLL+++E+ + ++ +E T++ + LY+KN + K++I +AKGK Sbjct: 66 QFANYIKGLEETRTRKLLLHKKEIIKILNKIKQENLTIIPIKLYFKNDYVKLEIALAKGK 125 Query: 134 KQHDKRSDIKEREWQ 148 K HDKR IK+R+ + Sbjct: 126 KLHDKRQTIKKRDTE 140 >UniRef50_Q1IQ53 SsrA-binding protein n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=SSRP_ACIBL Length = 175 Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 55/130 (42%), Positives = 87/130 (66%), Gaps = 1/130 (0%) Query: 10 GSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGAN 69 G ++N+ A H YF+ +++EAG+AL+G EVKS+R G+AN+ D+Y L+++ E +L A+ Sbjct: 25 GERDASVNRAASHNYFLLDKYEAGVALRGTEVKSIRDGRANLKDAYGLVKENELWLINAH 84 Query: 70 ITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGV 129 I P AS + P RTRKLL+ +RE+ L ++G+T++ +Y+KN KV++ V Sbjct: 85 IGPYDAASYNNHA-PLRTRKLLVKKREILKLLAASQQKGHTLIPTRMYFKNGRVKVELAV 143 Query: 130 AKGKKQHDKR 139 AKGK+ DKR Sbjct: 144 AKGKQLWDKR 153 >UniRef50_B9XT05 SsrA-binding protein n=1 Tax=bacterium Ellin514 RepID=B9XT05_9BACT Length = 151 Score = 107 bits (266), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 57/135 (42%), Positives = 82/135 (60%), Gaps = 1/135 (0%) Query: 12 ATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANIT 71 A I N +AR +Y I E FEAG+AL+G EVKSLRAG I+D++ + + + FL+ +I Sbjct: 2 ADILSNHKARRDYHILETFEAGIALKGTEVKSLRAGLGQIADAFARVENDQVFLYNVHID 61 Query: 72 PMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAK 131 + +P RKLLL++ E+ L+G + +G + LS YWKN KV + V K Sbjct: 62 EYRFGNRQN-HEPKSARKLLLHKSEIRKLFGLASVKGNALFPLSFYWKNGKVKVALAVGK 120 Query: 132 GKKQHDKRSDIKERE 146 GK + DKR DIK+R+ Sbjct: 121 GKVEFDKRDDIKKRD 135 >UniRef50_Q6MAG8 SsrA-binding protein n=4 Tax=Chlamydiales RepID=SSRP_PARUW Length = 153 Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 56/139 (40%), Positives = 83/139 (59%), Gaps = 1/139 (0%) Query: 8 KPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFG 67 K + + N+RA H+Y I E FE G+ LQG E+KS+R A + D+YV + E +L G Sbjct: 2 KDKHSDLVSNRRATHDYEILETFETGIVLQGTEIKSIRDHGATLQDAYVKVIHNELWLIG 61 Query: 68 ANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKI 127 NI + H + R RKLL+++RE+ G + +G ++ L+LY K KV+I Sbjct: 62 CNIAHYRFGNIHN-HEEKRDRKLLMHKREIKKCKGAIQEKGLALIPLALYLKQGRIKVRI 120 Query: 128 GVAKGKKQHDKRSDIKERE 146 +AKGKK DKR+D+KER+ Sbjct: 121 AIAKGKKSFDKRADLKERD 139 >UniRef50_Q04TV5 SsrA-binding protein n=6 Tax=Leptospira RepID=SSRP_LEPBJ Length = 160 Score = 105 bits (263), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 60/157 (38%), Positives = 99/157 (63%), Gaps = 3/157 (1%) Query: 5 KAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAF 64 K +PG + + +NK+A+ + + EAG+ L G EVKSLR K N++D++ +++GE F Sbjct: 4 KKEEPGHSPL-VNKKAKFNFELVSFIEAGIVLSGSEVKSLREKKGNLTDAFAKIKNGEVF 62 Query: 65 LFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAW-C 123 L +ITP +V R RKLLL+++E++ L +V +G +VA +Y+KN Sbjct: 63 LENFSITPYKNGG-YVNHPEIRPRKLLLHKKEIEKLERQVKEKGLVLVATKVYFKNNLRV 121 Query: 124 KVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 KV+I V K KK HDKR D+++++ Q + AR +K+++R Sbjct: 122 KVEIAVGKPKKIHDKRDDMQKKDAQQEIARALKSSNR 158 >UniRef50_A3ZLQ9 SsrA-binding protein n=2 Tax=Planctomycetaceae RepID=A3ZLQ9_9PLAN Length = 176 Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 85/145 (58%) Query: 13 TIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITP 72 I N++ARH+Y I + E G+ L G EVK+LR GK ++ +++ + GE FL I Sbjct: 30 PIGENRKARHDYEIIDTLECGIQLVGSEVKTLRDGKVSLGEAFARVLRGEVFLVNCEIPE 89 Query: 73 MAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKG 132 S + P R RKLLL + E+ + +G ++V L +Y+K KV +G+ +G Sbjct: 90 YRNTSMFLNHVPKRPRKLLLRKSEIVKFAAKSEDKGLSIVPLKMYFKRGLVKVLLGIGRG 149 Query: 133 KKQHDKRSDIKEREWQVDKARIMKN 157 +KQHDKR +K+++ + D AR+M++ Sbjct: 150 RKQHDKRDKLKQQDAKRDIARVMRS 174 >UniRef50_B1VAG4 SsrA-binding protein n=2 Tax=Candidatus Phytoplasma RepID=B1VAG4_PHYAS Length = 176 Score = 102 bits (255), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 51/141 (36%), Positives = 93/141 (65%), Gaps = 6/141 (4%) Query: 13 TIALNKRARHEYFIEEE-FEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANIT 71 TIA NK+A ++F+E++ + AG+ L G EVKS+R GK ++++SY +++ E F+ +I Sbjct: 29 TIATNKKAVFDFFLEKKKYHAGIKLLGNEVKSIRLGKISLNNSYAYIKNNEIFIVNLSIL 88 Query: 72 --PMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGV 129 P + + D RT+KLLL ++E+ + ++ +G++V+ L +Y++ KV+I + Sbjct: 89 KYPFSCCMQY---DENRTKKLLLRKQEIIQIQNKIKTQGFSVIPLKVYFEKNLVKVEIVL 145 Query: 130 AKGKKQHDKRSDIKEREWQVD 150 AKGKK++DKR+ +KE+ Q+ Sbjct: 146 AKGKKKYDKRNSLKEKAAQLS 166 >UniRef50_B2GAM5 SsrA-binding protein n=4 Tax=Bacteria RepID=SSRP_LACF3 Length = 157 Score = 102 bits (254), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 64/157 (40%), Positives = 95/157 (60%), Gaps = 1/157 (0%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M KK + IA NK+ARH+Y + + FEAGL L G E+KS+RA + + D Y + Sbjct: 1 MAKKNHQGLDANLIAQNKKARHDYTVTDTFEAGLVLTGTEIKSVRARRVTLKDGYAQFHN 60 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 GE +L +I A + DP R RKLLL+++EL L G + +G T+V L +Y K+ Sbjct: 61 GELWLMNVHIAEFAGGNI-FNHDPLRNRKLLLHKKELKKLQGELTAKGVTLVPLKMYLKH 119 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157 + KV +G+A+GK ++DKR+ IK+RE R+MK+ Sbjct: 120 GYAKVLLGLAQGKHEYDKRNAIKKREQDRQIDRVMKH 156 >UniRef50_Q9Z8K1 SsrA-binding protein n=2 Tax=Chlamydophila pneumoniae RepID=SSRP_CHLPN Length = 151 Score = 102 bits (253), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 55/146 (37%), Positives = 86/146 (58%), Gaps = 1/146 (0%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPM 73 I N++A Y + E EAG+ L G E+KSLR N+ D+YV++ GE +L A+I P Sbjct: 6 IVSNRKALRNYEVIETLEAGIVLTGTEIKSLRDHGGNLGDAYVIVSKGEGWLLNASIAPY 65 Query: 74 AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGK 133 + + + R RKLLL++ EL L G++ ++G T++ L ++ + KV++G +GK Sbjct: 66 RFGNIYN-HEERRKRKLLLHRYELRKLEGKIAQKGMTLIPLGMFLSRGYVKVRLGCCRGK 124 Query: 134 KQHDKRSDIKEREWQVDKARIMKNAH 159 K +DKR I ERE + + A MK H Sbjct: 125 KAYDKRRTIIEREKEREVAAAMKRRH 150 >UniRef50_C9RKN3 SsrA-binding protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKN3_FIBSS Length = 156 Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 58/157 (36%), Positives = 92/157 (58%), Gaps = 8/157 (5%) Query: 8 KPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDG--EAFL 65 K S + N++A H YF++E FE G+ L G EVKS+R GK + ++++ + + E +L Sbjct: 4 KESSTPVIQNRKANHLYFVDETFEVGIMLIGSEVKSIRNGKCTLGEAWIDIDENKDELWL 63 Query: 66 FGANITPMAVAS--THVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWC 123 GA+I A+ H P R RKLL + E+ + +G T++ L +Y+KN Sbjct: 64 VGAHIDEYLFANRFNHF---PARRRKLLAHTHEIQKMRKAKELKGCTIIPLKMYFKNRIA 120 Query: 124 KVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 K+++G+ +GK QHDKR DI R+ +++ AR K AHR Sbjct: 121 KLEVGICRGKDQHDKRQDILVRDAKMEMARAAK-AHR 156 >UniRef50_Q6YR70 SsrA-binding protein n=3 Tax=Candidatus Phytoplasma asteris RepID=SSRP_ONYPE Length = 152 Score = 100 bits (248), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 52/149 (34%), Positives = 94/149 (63%), Gaps = 2/149 (1%) Query: 13 TIALNKRARHEYFIEEE-FEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANIT 71 TI NK+A ++Y +E++ ++AG+ L G EVKS+R GK N+ +SY+ +++ EAF+ I Sbjct: 3 TIITNKKAFYDYSLEKKKYQAGIKLLGSEVKSIRIGKINLLNSYIHIKNEEAFIVNMTIL 62 Query: 72 PMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAK 131 S + D RT+KLLL + E+ + ++ E +V+ L +Y+ K++I ++K Sbjct: 63 KYPF-SCCLAYDENRTKKLLLQKHEIIQIKNKIKTEKLSVIPLKVYFNKNLVKLEIALSK 121 Query: 132 GKKQHDKRSDIKEREWQVDKARIMKNAHR 160 GKKQHDKR+ +K+ + ++ + +KN ++ Sbjct: 122 GKKQHDKRNALKDFDAKLRIQKTLKNFNQ 150 >UniRef50_B2S2D1 SsrA-binding protein n=2 Tax=Treponema pallidum RepID=SSRP_TREPS Length = 154 Score = 98.6 bits (244), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 56/150 (37%), Positives = 86/150 (57%), Gaps = 1/150 (0%) Query: 10 GSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGAN 69 G+ IA N++A Y +E+ E G+AL+G EVKS+RAG + D++ +R GE +L + Sbjct: 5 GTHLIAKNRKAFFNYHVEDRLECGIALEGTEVKSVRAGHLSFPDAFAEMRGGELWLKNVH 64 Query: 70 ITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGV 129 I A + +P R RKLL ++ ++ L +V +GYT+V L Y K KV +G+ Sbjct: 65 IAEYVHACS-FAPNPDRMRKLLAHRDQIARLKRKVEEKGYTLVPLEFYLKAGRVKVALGI 123 Query: 130 AKGKKQHDKRSDIKEREWQVDKARIMKNAH 159 KGKK DKR+ IK R+ + +R + H Sbjct: 124 CKGKKLFDKRAQIKARDNARELSRSLCERH 153 >UniRef50_D2PSC9 SsrA-binding protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PSC9_9ACTO Length = 173 Score = 97.4 bits (241), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 54/134 (40%), Positives = 84/134 (62%), Gaps = 1/134 (0%) Query: 13 TIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITP 72 IA N++A H+Y + E +EAG+ LQG EVK+LRAG+A++ + + + E +L G +I P Sbjct: 23 VIARNRKAAHDYHLGESWEAGMVLQGAEVKALRAGRASLVGGFATVEEREIWLHGVHI-P 81 Query: 73 MAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKG 132 + R RKLLL++ ++D + +VN G T+V + LY+K+ KV+I +A+G Sbjct: 82 QYSQARWFNDGSRRKRKLLLHRAQIDKIERKVNESGLTIVPVLLYFKDGRAKVEIALARG 141 Query: 133 KKQHDKRSDIKERE 146 KK DKR + ERE Sbjct: 142 KKTWDKRHALAERE 155 >UniRef50_C9LGK2 SsrA-binding protein n=8 Tax=Prevotella RepID=C9LGK2_9BACT Length = 159 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/161 (36%), Positives = 92/161 (57%), Gaps = 4/161 (2%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M K KP I NKRA H+YF+ + AG+ L G E+KS+R GKA + D++ + + Sbjct: 1 MAKNNKLKPARINIK-NKRAEHDYFVIDRLTAGIVLTGTEIKSIRLGKAGLVDTFCFINN 59 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYW-K 119 GE ++ + + S + + R RKLLLN++E+ G T+V L LY + Sbjct: 60 GEMWVKNMYVAEYSFGSYN-RHELRRDRKLLLNKKEIRHWASETKSPGLTIVPLRLYIDE 118 Query: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 N K+ IG+ +GKK++DKR+ IKE+E + + R+ K AH+ Sbjct: 119 NGRAKLDIGLCRGKKEYDKRATIKEKESRREIERVTK-AHK 158 >UniRef50_Q3ARF1 SsrA-binding protein n=11 Tax=Chlorobiaceae RepID=SSRP_CHLCH Length = 157 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/156 (35%), Positives = 97/156 (62%), Gaps = 6/156 (3%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M+K+ + A + N++ARHE+ I E F AG+ L G EVKS+R G+A++++S+ ++ Sbjct: 1 MSKQPQQRYAEAIV--NRKARHEFEIIETFVAGIQLAGSEVKSVRLGQASLNESFAIILR 58 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVAL-SLYWK 119 E +L ITP V+ + R+RKLLL+++E+ L +V+ +G T+V L + + Sbjct: 59 NEVWLENMQITPYKHNRMEVL-EAKRSRKLLLHKKEIAKLQAKVSEKGLTLVPLKAFFTP 117 Query: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQ--VDKAR 153 + K+++ +A+GKK +DKR +K RE Q +D+ R Sbjct: 118 HGLLKIELAIARGKKLYDKRETLKNRENQRHLDQLR 153 >UniRef50_A6DIW5 SsrA-binding protein n=2 Tax=Bacteria RepID=A6DIW5_9BACT Length = 147 Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 52/133 (39%), Positives = 85/133 (63%), Gaps = 1/133 (0%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPM 73 IA N++AR Y I E++EAG+ LQG EVKS R +I++++V GEA++ ++I+P Sbjct: 3 IATNRKARFNYEIIEKYEAGVELQGTEVKSCRNKSISIAEAFVAFESGEAWMRESHISPY 62 Query: 74 AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGK 133 + + +P R R+LLL++RE+ L V ++G +V+ LS++ K K+ IG+ +GK Sbjct: 63 EQGNRNN-HEPKRKRRLLLHKREIRKLMREVEQKGLSVIPLSVHLKRGKIKISIGLCRGK 121 Query: 134 KQHDKRSDIKERE 146 DKR IK+R+ Sbjct: 122 NTVDKRDSIKKRD 134 >UniRef50_Q254F5 SsrA-binding protein n=1 Tax=Chlamydophila felis Fe/C-56 RepID=SSRP_CHLFF Length = 150 Score = 96.7 bits (239), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 52/146 (35%), Positives = 84/146 (57%), Gaps = 1/146 (0%) Query: 11 SATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANI 70 S I N++A Y + + +AG+ L G E+KSLR N+ D+YV + GEA+L A+I Sbjct: 3 SKEIVSNRKALRNYEVLDTVDAGVVLTGTEIKSLRDHGGNLGDAYVTISKGEAWLLNASI 62 Query: 71 TPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVA 130 P + + + R RKLLL++ E+ L +V+++G T++ L ++ + K+++G Sbjct: 63 APYRFGNIYN-HEERRKRKLLLHRYEIQKLESKVSQKGITIIPLGMFLSRGYVKIRLGCC 121 Query: 131 KGKKQHDKRSDIKEREWQVDKARIMK 156 +GKK HDKR I RE Q + MK Sbjct: 122 RGKKAHDKRQTIIAREKQREVESAMK 147 >UniRef50_Q0SPD1 SsrA-binding protein n=20 Tax=Borrelia RepID=SSRP_BORAP Length = 150 Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 51/142 (35%), Positives = 88/142 (61%), Gaps = 5/142 (3%) Query: 17 NKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPMAVA 76 NK+A+ YFIEE+ G+ L+G EVKS++A K + ++S+ +++ E +L +++ Sbjct: 10 NKKAKFNYFIEEKISCGIVLKGTEVKSIKAKKLSFNNSFAIIKKEELWLENLHVSKYKEG 69 Query: 77 S--THVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGKK 134 + H D R RKLL+ ++EL L +EGYT++ +S Y K + KV++G+ KGKK Sbjct: 70 NIFNH---DELRPRKLLIKKKELQRLKKFKEKEGYTLIPISFYLKKSIIKVEVGICKGKK 126 Query: 135 QHDKRSDIKEREWQVDKARIMK 156 +DKR +K++ + D +R +K Sbjct: 127 LYDKREILKQKSIKKDLSREIK 148 >UniRef50_D2R3D1 SsrA-binding protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R3D1_9PLAN Length = 179 Score = 95.1 bits (235), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 89/151 (58%), Gaps = 6/151 (3%) Query: 9 PGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGA 68 P +A N++AR Y I + E G+ L G EVKSLR GK ++ ++Y ++DG+ +L GA Sbjct: 29 PPVTLVAENRKARFNYEILDSLECGIQLVGSEVKSLRDGKLSLDEAYARIKDGDVWLVGA 88 Query: 69 NITPMAVAS--THVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYW-KNAWCKV 125 +I AS H P R RKLL++++++ G + +G T+V L +Y+ + KV Sbjct: 89 DIAEYKQASIWNHA---PKRPRKLLMHKQQMRKFAGTSHDKGLTLVPLKVYFTERGIAKV 145 Query: 126 KIGVAKGKKQHDKRSDIKEREWQVDKARIMK 156 IG+ +GKK HDKR +K+ + + D +R + Sbjct: 146 VIGLCRGKKLHDKRETLKKNDAKRDISRAFR 176 >UniRef50_Q7UH38 SsrA-binding protein n=1 Tax=Rhodopirellula baltica RepID=SSRP_RHOBA Length = 176 Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 55/153 (35%), Positives = 87/153 (56%), Gaps = 6/153 (3%) Query: 7 HKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLF 66 ++P +A N++A+ Y I + E G+ L G EVKS+R GK ++ ++++ + +GE +L Sbjct: 25 NQPNITPVAENRKAKFRYEILDSVECGMMLMGSEVKSMREGKLSLDEAHIRVTNGELWLV 84 Query: 67 GANITPMAVAS--THVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYW-KNAWC 123 G++I A H DP R RKLL++ +E D GR G T++ L +Y+ + Sbjct: 85 GSDIAHYNNAGMWNH---DPRRPRKLLVHAKEFDKFAGRAFERGLTLIPLRVYFSERGLA 141 Query: 124 KVKIGVAKGKKQHDKRSDIKEREWQVDKARIMK 156 K +G+ KGKK HDKR IK+RE R M+ Sbjct: 142 KCVMGLVKGKKLHDKRETIKKRESDRGLQRAMR 174 >UniRef50_D1VZH7 SsrA-binding protein n=1 Tax=Prevotella timonensis CRIS 5C-B1 RepID=D1VZH7_9BACT Length = 160 Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 56/144 (38%), Positives = 86/144 (59%), Gaps = 6/144 (4%) Query: 17 NKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPMAVA 76 NKRA EYF + + AG+ L G E+KS+R GKA++ D++ + +GE ++ G NI+P Sbjct: 19 NKRASFEYFFIDTYTAGIVLTGTEIKSIRLGKASLVDAFCYINNGEIWVKGMNISPYFYG 78 Query: 77 --STHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYW-KNAWCKVKIGVAKGK 133 S H + R RKLLL +RE+ L G T++ + L+ + KV I +AKGK Sbjct: 79 SFSNH---EARRDRKLLLTKREIRRLEIDAKNPGNTILPVLLFIDQKGRAKVDIVLAKGK 135 Query: 134 KQHDKRSDIKEREWQVDKARIMKN 157 K++DKR +KE+E Q + R +K+ Sbjct: 136 KEYDKRQSLKEKEDQREMDRALKH 159 >UniRef50_Q11TP3 SsrA-binding protein n=36 Tax=Bacteroidetes RepID=SSRP_CYTH3 Length = 153 Score = 93.6 bits (231), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/139 (38%), Positives = 85/139 (61%), Gaps = 2/139 (1%) Query: 17 NKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPMAVA 76 NK+A EY E++EAG+ L+G E+K++R KA+IS++Y L + E ++ NI+ Sbjct: 14 NKKASFEYEFLEKYEAGIVLKGTEIKAIRMSKASISEAYCLFDNEELWIKNMNISSYDKG 73 Query: 77 STHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYW-KNAWCKVKIGVAKGKKQ 135 S + DP RKLLL + EL L+ +G T++AL L+ + + K++I +AKGKK Sbjct: 74 SFY-NHDPLSARKLLLRKAELKKLFMHSKEKGLTIIALRLFTNERGYAKIEIALAKGKKL 132 Query: 136 HDKRSDIKEREWQVDKARI 154 +DKR IK ++ + + RI Sbjct: 133 YDKRESIKSKDNEREMQRI 151 >UniRef50_B1AI43 SsrA-binding protein n=16 Tax=Mycoplasmataceae RepID=SSRP_UREP2 Length = 141 Score = 93.2 bits (230), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 49/133 (36%), Positives = 77/133 (57%), Gaps = 1/133 (0%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPM 73 I NK AR Y + + FE G+ L+G EVKS+ +I+++YV + +A + ++ Sbjct: 2 IVSNKHARRNYELLDFFECGIVLKGTEVKSISRANCSINEAYVQIIKNQALILNMHVANF 61 Query: 74 AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGK 133 + DP R RKLLL+++E+ L V + T+V +YWKN K++I + KGK Sbjct: 62 -FEGNNFNQDPYRNRKLLLHKKEIIRLQHLVKTQHMTIVPTKIYWKNNKLKIEIALGKGK 120 Query: 134 KQHDKRSDIKERE 146 + HDKR DIK+R+ Sbjct: 121 QLHDKREDIKKRD 133 >UniRef50_A9G6R4 SmpB-like protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G6R4_SORC5 Length = 139 Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 52/114 (45%), Positives = 73/114 (64%), Gaps = 4/114 (3%) Query: 34 LALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPMAVAS-THVVCDPTRTRKLLL 92 + L G EVK LR G A ++DS+ + +GEAFL G NI M A+ H + R RKLLL Sbjct: 1 MVLLGSEVKMLRDGAAELTDSWCAIENGEAFLKGVNIPVMPGAAFGH---EAKRPRKLLL 57 Query: 93 NQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGKKQHDKRSDIKERE 146 ++ E++++ V REG TV+A LY+KN K +I +AKGKK DKR +KE++ Sbjct: 58 HESEIEAIRKSVEREGMTVIATRLYFKNGRVKAEIALAKGKKTVDKRESLKEKD 111 >UniRef50_A0M3P0 SsrA-binding protein n=13 Tax=Bacteroidetes RepID=SSRP_GRAFK Length = 157 Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 53/141 (37%), Positives = 83/141 (58%), Gaps = 2/141 (1%) Query: 17 NKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPMAVA 76 N++A+ Y +++ AG+ L G E+K++R GKANI++S+ + E F+ ++ + A Sbjct: 15 NRKAKFNYEFLDKYTAGIKLAGTEIKAIREGKANIAESFCEFNNHELFVINMHVEEYSHA 74 Query: 77 STHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN-AWCKVKIGVAKGKKQ 135 TH +P RKLLL +REL L V G T++ L L+ + K++I +AKGKK Sbjct: 75 -THFNHNPRSQRKLLLQRRELRKLEKEVTNSGLTIIPLRLFINDRGLAKLQISLAKGKKL 133 Query: 136 HDKRSDIKEREWQVDKARIMK 156 +DKR IK+RE + RI K Sbjct: 134 YDKRETIKDRESKRRLDRIQK 154 >UniRef50_C6HYH8 SsrA-binding protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYH8_9BACT Length = 170 Score = 92.0 bits (227), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 53/148 (35%), Positives = 85/148 (57%), Gaps = 2/148 (1%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPM 73 ++ N++A Y + E FEAG+ L G EVK++R G N+ D++V E++L+ ++ P Sbjct: 18 VSTNRKALFRYEVIERFEAGIVLWGTEVKAIREGSVNLGDAFVRFEKEESWLYQMHVGPY 77 Query: 74 AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN-AWCKVKIGVAKG 132 DP R RKLLL+++E+ L+G ++G TVV L +Y N KV + + KG Sbjct: 78 R-GGNRENHDPLRVRKLLLHRKEILRLFGLTLQKGLTVVPLGIYSNNRKKFKVTLALVKG 136 Query: 133 KKQHDKRSDIKEREWQVDKARIMKNAHR 160 K Q DKR IK RE + +R+ ++ + Sbjct: 137 KTQGDKREAIKRREADREISRVFRSNQK 164 >UniRef50_C2D8P0 TmRNA-binding protein n=2 Tax=Coriobacteriaceae RepID=C2D8P0_9ACTN Length = 172 Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 50/144 (34%), Positives = 88/144 (61%), Gaps = 2/144 (1%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPM 73 IA N+ A H+Y ++ EAG+ L G EVKSLR ++D + ++R+ E +L G +I P Sbjct: 22 IAKNRSAYHDYDLDNAEEAGIELTGVEVKSLRERSCQLTDCFCIVRNNELYLVGLHIHPY 81 Query: 74 AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYW-KNAWCKVKIGVAKG 132 + + DP R R+LL++++++ S+ RV +G ++V L +Y+ + KVK+ V +G Sbjct: 82 SHGGVWNI-DPDRRRRLLMHKKQILSIARRVQTKGVSLVPLEIYFNERNRVKVKVAVGRG 140 Query: 133 KKQHDKRSDIKEREWQVDKARIMK 156 KK +DKR+ +R+ + R++K Sbjct: 141 KKMYDKRAAAAKRDSDREIQRVLK 164 >UniRef50_C6SHY7 SsrA-binding protein n=1 Tax=Neisseria meningitidis alpha275 RepID=C6SHY7_NEIME Length = 146 Score = 91.7 bits (226), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 45/96 (46%), Positives = 65/96 (67%), Gaps = 1/96 (1%) Query: 64 FLFGANITPM-AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAW 122 F++ A I + ASTH+ D R RKLLLNQ E++ L G+ R GYT+V L L++ Sbjct: 50 FIWSAAILRLCPTASTHIKPDAVRPRKLLLNQSEINKLIGKTERAGYTIVPLDLHFSRGK 109 Query: 123 CKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNA 158 K++IG+AKGKKQHDKR +KE +W+ +K R++K+ Sbjct: 110 IKMEIGLAKGKKQHDKRQSMKEADWKREKQRLIKHT 145 >UniRef50_Q7NB37 SsrA-binding protein n=1 Tax=Mycoplasma gallisepticum RepID=SSRP_MYCGA Length = 144 Score = 91.3 bits (225), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/130 (38%), Positives = 78/130 (60%), Gaps = 1/130 (0%) Query: 17 NKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPMAVA 76 NK+A++ Y + +++EAG++L G EVKSL + DSYV++R EA+L + P Sbjct: 8 NKKAKYNYELLDKYEAGISLSGNEVKSLALHHGKLDDSYVIIRKNEAYLLNL-LIPKYKF 66 Query: 77 STHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGKKQH 136 T V + TRTRKLLL++ E+ + + ++ +Y+ N KV I +A+ KK++ Sbjct: 67 DTSKVLNETRTRKLLLHKSEILKIDLIKKQHSLVIIPYQIYFVNNKIKVSIYLARPKKRY 126 Query: 137 DKRSDIKERE 146 DKR IKERE Sbjct: 127 DKRQTIKERE 136 >UniRef50_Q02A69 SsrA-binding protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=SSRP_SOLUE Length = 156 Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 54/139 (38%), Positives = 80/139 (57%), Gaps = 6/139 (4%) Query: 17 NKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPMAVA 76 N++A H YF+ E FE G+ L G EVK+ + K + D+Y + EA+L A+I+ + Sbjct: 15 NRQAGHNYFLSERFECGMVLTGTEVKAAKDAKIQLKDAYASVLGDEAWLLNAHISQYSHG 74 Query: 77 S--THVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGKK 134 + H+ P R RKLLL++RE+D L +G ++ +Y KN K +I VAKGKK Sbjct: 75 NRENHL---PVRNRKLLLHRREIDKLQEITREKGLALIPTKIYMKNGKIKCEIAVAKGKK 131 Query: 135 QHDKRSDIKEREWQVDKAR 153 +DKR+ K R D+AR Sbjct: 132 LYDKRAADKARTAD-DEAR 149 >UniRef50_Q6KI26 SsrA-binding protein n=1 Tax=Mycoplasma mobile RepID=SSRP_MYCMO Length = 142 Score = 90.9 bits (224), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 50/134 (37%), Positives = 82/134 (61%), Gaps = 6/134 (4%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITP- 72 I NK A Y I E+++AGL L+GWEVKS+R K + +++ ++ EA++ +I+ Sbjct: 4 IIKNKDAFFNYEILEKYKAGLILKGWEVKSIRENKVQLKGAFITFKNDEAYITNMHISQY 63 Query: 73 MAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKG 132 M+V + +P RKLLLN+ E+ + + NR V+ L+L+W N + K++I +AKG Sbjct: 64 MSVKGNEL--EP---RKLLLNKHEIRHIQDKKNRNSLAVIPLNLFWDNNYIKLEIALAKG 118 Query: 133 KKQHDKRSDIKERE 146 K + DKR I E++ Sbjct: 119 KTKADKRHRILEKD 132 >UniRef50_B1GZD8 SsrA-binding protein SmpB n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZD8_UNCTG Length = 153 Score = 89.7 bits (221), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 52/143 (36%), Positives = 84/143 (58%), Gaps = 2/143 (1%) Query: 13 TIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITP 72 T++ N++A + Y I E+ E G+ L G+EVKS R ++ DS V D EAF I Sbjct: 9 TLSSNRKAYYNYEILEKLETGIVLSGYEVKSARQSNISLVDSVVRFSDCEAFAENMFIAS 68 Query: 73 MAVASTHVV-CDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN-AWCKVKIGVA 130 STH+ D R RKLL+++ E++ + +V +G TV+ L +Y N K+ IG+A Sbjct: 69 YEQISTHIADYDAKRKRKLLMHKSEINKMRTKVKEKGLTVIPLEVYIGNRGKIKLLIGLA 128 Query: 131 KGKKQHDKRSDIKEREWQVDKAR 153 KGKK ++K+ +K+++ + + AR Sbjct: 129 KGKKTYNKKEALKKKDIEREVAR 151 >UniRef50_Q83N13 SsrA-binding protein n=2 Tax=Tropheryma whipplei RepID=SSRP_TROWT Length = 211 Score = 88.6 bits (218), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 56/148 (37%), Positives = 85/148 (57%), Gaps = 1/148 (0%) Query: 13 TIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITP 72 IA NK A + YF+++ FEAGL L G EVKS+R K ++S++Y+ + E +L I P Sbjct: 26 VIASNKSAEYNYFLDKTFEAGLVLLGSEVKSVRQQKISLSEAYIYEDNSEIWLANLYI-P 84 Query: 73 MAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKG 132 +P R RKLLL++ ++ L + G T+V + Y++N K+ I +A+G Sbjct: 85 EHKTGGWTNHNPRRLRKLLLHKYQIARLRKDLLIPGITLVPIKFYFRNGRAKLLIALARG 144 Query: 133 KKQHDKRSDIKEREWQVDKARIMKNAHR 160 KK DKR IKERE ++ R +K+ R Sbjct: 145 KKLIDKREVIKEREATLEANRALKHRLR 172 >UniRef50_C6X237 TmRNA-binding protein SmpB n=2 Tax=Flavobacteriales RepID=C6X237_FLAB3 Length = 155 Score = 88.6 bits (218), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 63/159 (39%), Positives = 89/159 (55%), Gaps = 5/159 (3%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M K K K S TI LN+RAR EY + EE EAG+ L G E+KSLR+ KA+I+D++ D Sbjct: 1 MFKMKIEK--SVTI-LNRRARFEYELLEEIEAGMVLTGTEIKSLRSSKASITDAFCQFID 57 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 GE ++ I + T R RKLLL++ EL ++ G T++ L +Y Sbjct: 58 GELYIINMMIDEYKLG-TFYNHKTKRERKLLLHKTELKKFEKKLKDVGNTIIPLKMYINA 116 Query: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNA 158 K+ I V +GKK DKR IK+RE + + RI+K + Sbjct: 117 KGKAKILIAVGRGKKLFDKRESIKDRENKRNIDRILKKS 155 >UniRef50_P75043 SsrA-binding protein n=2 Tax=Mycoplasma RepID=SSRP_MYCPN Length = 147 Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 47/132 (35%), Positives = 80/132 (60%), Gaps = 1/132 (0%) Query: 17 NKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPMAVA 76 N RA+++Y++ + AGL L+G EVKSL G+ ++ ++YV + E ++ +I+P A Sbjct: 7 NPRAQYDYYLLTGYCAGLVLKGSEVKSLALGQGSLKEAYVFIDKHEVYIKDFSISPYAF- 65 Query: 77 STHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGKKQH 136 S R +KLLLN+ E+ + R +EG +++ L +++KN K++I +AK KK+ Sbjct: 66 SGEFNHPFKRVKKLLLNRNEIKQITARQKQEGLSIIPLKVFFKNGKIKMEIWLAKPKKKF 125 Query: 137 DKRSDIKEREWQ 148 DKR IK + Q Sbjct: 126 DKREAIKSKTIQ 137 >UniRef50_B7GAQ2 Predicted protein (Fragment) n=3 Tax=Bacillariophyta RepID=B7GAQ2_PHATR Length = 160 Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 54/157 (34%), Positives = 90/157 (57%), Gaps = 3/157 (1%) Query: 4 KKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVL-LRDGE 62 KK +K +TI++N+ A Y I + EAG++L G EVKS+R GK N+ D Y+ +DG Sbjct: 1 KKKNKTRDSTISVNRVAYRNYEIVDTIEAGISLVGTEVKSIRNGKLNLRDGYIRPTKDGR 60 Query: 63 A-FLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNA 121 + L+ +I + A + TR R LL+++ E + ++G T+V L Y+ + Sbjct: 61 SCILYNVHIGKHSQAGAFFQHEETRPRALLVHKAEARKFLQQTEQQGMTIVPLKAYYNDK 120 Query: 122 -WCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157 K++I + +GK DKR IKER+ + ++ RI+K+ Sbjct: 121 NRVKLQIALCRGKNVRDKRVTIKERDAKREERRIIKS 157 >UniRef50_A6L927 SsrA-binding protein n=17 Tax=Bacteria RepID=SSRP_PARD8 Length = 153 Score = 85.1 bits (209), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 48/131 (36%), Positives = 78/131 (59%), Gaps = 2/131 (1%) Query: 17 NKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPMAVA 76 NKRA +Y + + F AG+ L G E+KS+R GKA++ D++ ++ GE ++ I Sbjct: 13 NKRATFDYELLDTFTAGIVLTGTEIKSIRLGKASLVDTFCIVEKGELWVKNMYIAEY-FY 71 Query: 77 STHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYW-KNAWCKVKIGVAKGKKQ 135 T+ + R RKLLL ++EL + G V G+T+V L+ + KV + +A+GKK+ Sbjct: 72 GTYNNHNARRDRKLLLTKKELRKIEGAVRASGFTIVPTRLFINEKGLAKVVVAIARGKKE 131 Query: 136 HDKRSDIKERE 146 +DKR I+ER+ Sbjct: 132 YDKRDSIRERD 142 >UniRef50_D1NAK5 SsrA-binding protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NAK5_9BACT Length = 153 Score = 84.7 bits (208), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 51/150 (34%), Positives = 80/150 (53%), Gaps = 5/150 (3%) Query: 9 PGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGA 68 P +A NK+A H Y I E FEAG+ L G EVKS R +++ YV + +G+A+L Sbjct: 6 PADPVLATNKKAFHNYHIIERFEAGVELVGTEVKSCRDRAIVMNEGYVTINNGQAWLLNV 65 Query: 69 NITPMAVAS--THVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVK 126 +I + HV T+ R+LLL+ E+ L + ++G T+V L Y K KV+ Sbjct: 66 HIAVYGFGNRFNHVA---TQKRRLLLHHNEILKLAQWLGQKGGTIVPLKFYLKKGLVKVE 122 Query: 127 IGVAKGKKQHDKRSDIKEREWQVDKARIMK 156 I +GK D+R ++ R+ ++ R +K Sbjct: 123 IAYCQGKTHGDQRETLRRRQSDLEMRRAVK 152 >UniRef50_A5IZI0 SsrA-binding protein n=3 Tax=Mycoplasma RepID=SSRP_MYCAP Length = 147 Score = 83.2 bits (204), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 47/136 (34%), Positives = 80/136 (58%), Gaps = 6/136 (4%) Query: 13 TIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITP 72 I+ N++ + Y I E+ EAG++L GWEVKS RA N+++SY+ + GE FL AN Sbjct: 3 VISENRKGLYGYKIIEKHEAGISLLGWEVKSARAQTVNLTNSYIFFKKGELFLCNANFAK 62 Query: 73 MAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVV-ALSLYWKN-AWCKVKIGVA 130 + + R RKLL++++E+ L +++R T + +Y+ N + KV+I + Sbjct: 63 YMLLK----VEEDRDRKLLMHKKEIIRLKNKLDRLSSTTIKPTKIYFNNKSKIKVEIALV 118 Query: 131 KGKKQHDKRSDIKERE 146 +G + DKR D+K+R+ Sbjct: 119 QGMNRADKREDLKKRD 134 >UniRef50_UPI0001912596 SsrA-binding protein n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. E98-3139 RepID=UPI0001912596 Length = 98 Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 38/40 (95%), Positives = 40/40 (100%) Query: 3 KKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVK 42 ++KAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVK Sbjct: 6 EEKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVK 45 >UniRef50_B3PM30 SsrA-binding protein n=2 Tax=Mycoplasma RepID=B3PM30_MYCA5 Length = 143 Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 51/136 (37%), Positives = 72/136 (52%), Gaps = 5/136 (3%) Query: 12 ATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLL-RDGEAFLFGANI 70 A I NK + EY I +E G++L GWE KSLRA A + S+ + + E +L A I Sbjct: 2 ALIVKNKFPKLEYEIHSTYECGISLLGWEAKSLRAKNAKLESSFCSISQSDELWLNNAYI 61 Query: 71 TPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVA 130 + V DP R+RKLL+++ E+ L R + LS YW+ KV+I +A Sbjct: 62 AQYML----VKGDPLRSRKLLMHRHEIKKLRSLQQRLNLIFIPLSFYWRGNKIKVEIALA 117 Query: 131 KGKKQHDKRSDIKERE 146 K +HDKR IK+ E Sbjct: 118 KHLNKHDKREKIKKDE 133 >UniRef50_B3EUI8 SsrA-binding protein n=4 Tax=Bacteroidetes RepID=B3EUI8_AMOA5 Length = 156 Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 51/146 (34%), Positives = 83/146 (56%), Gaps = 7/146 (4%) Query: 11 SATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANI 70 + + NK+A EY ++F AG+ L G E+KS+R K ++ ++Y + GE ++ +I Sbjct: 9 TGLVIRNKQASFEYTFIDKFIAGIVLTGTEIKSIRKAKVSLQEAYCYFKSGELWIKSMHI 68 Query: 71 TPMAVAS--THVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYW-KNAWCKVKI 127 + HV R RKLLL ++EL+ L + +G T++ + L+ +N K++I Sbjct: 69 AQYEQGNIYNHV---ENRERKLLLTRKELNKLI-KNQEKGLTIIPIQLFIDENNRAKLQI 124 Query: 128 GVAKGKKQHDKRSDIKEREWQVDKAR 153 +AKGKK +DKR IKER+ Q D R Sbjct: 125 ALAKGKKLYDKRQHIKERDVQRDMER 150 >UniRef50_Q601U1 SsrA-binding protein n=3 Tax=Mycoplasma hyopneumoniae RepID=SSRP_MYCH2 Length = 145 Score = 78.6 bits (192), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 48/143 (33%), Positives = 79/143 (55%), Gaps = 4/143 (2%) Query: 17 NKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPMAVA 76 NKRA +Y I + F AG+ L GWEVKS++A ++ ++ + E FL A I+ + Sbjct: 7 NKRANFDYEIIDRFTAGIVLLGWEVKSIQAKNISLVGAFCYFKGHELFLSNAKISEYKGS 66 Query: 77 STHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGKKQH 136 R+RKLL+++ EL + ++ L + KN K++I +AKGK + Sbjct: 67 RGQ----TDRSRKLLMHKHELKKILKEKITRKLAIIPLFIGQKNRKIKLEIALAKGKTKL 122 Query: 137 DKRSDIKEREWQVDKARIMKNAH 159 DKR+ IKER+ + + A+ +KN + Sbjct: 123 DKRNLIKERDQKREAAKFLKNYY 145 >UniRef50_C1D1M8 Putative SsrA-binding protein n=1 Tax=Deinococcus deserti VCD115 RepID=C1D1M8_DEIDV Length = 143 Score = 77.4 bits (189), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 53/126 (42%), Positives = 78/126 (61%), Gaps = 1/126 (0%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPM 73 + N+RA +EY + E FEAG++L G EVKS+RAG + D++ L G L G I P Sbjct: 4 VYTNRRAHYEYELLERFEAGISLTGSEVKSIRAGGVDFRDAFARLHGGNVDLEGLYI-PA 62 Query: 74 AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGK 133 +T+ +P RTR+LLLN+ E+ L + ++G T+V LY K + KV++ +A+GK Sbjct: 63 YKEATYNNHEPRRTRRLLLNRMEILKLKKGLEQKGLTLVPTRLYQKGQYFKVELALARGK 122 Query: 134 KQHDKR 139 K HDKR Sbjct: 123 KLHDKR 128 >UniRef50_A5KSW6 SsrA-binding protein n=2 Tax=candidate division TM7 RepID=A5KSW6_9BACT Length = 154 Score = 73.9 bits (180), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/156 (31%), Positives = 81/156 (51%), Gaps = 6/156 (3%) Query: 3 KKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGE 62 KKK G+ LN+RA+ +Y + +E GL L G EV++ R G + +YV +R+ E Sbjct: 2 KKKTTTSGAV---LNRRAKFDYELGDELAVGLVLNGPEVRAARDGHVQLKGAYVTIRNDE 58 Query: 63 AFLFGA--NITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 +L A ++ P T+ RKLL +++++ +L + G T+V L L+ Sbjct: 59 LWLNNASFSVKPAQPKRGDARAVDTQPRKLLAHRKQIATL-AEQKKTGLTIVPLKLFTSG 117 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMK 156 K+ I KGKK++DKR +K R + + R M+ Sbjct: 118 RHIKLLIAAGKGKKKYDKRETLKRRAQEREAQRAMR 153 >UniRef50_A8Z637 SsrA (TmRNA)-binding protein n=2 Tax=Candidatus Sulcia muelleri RepID=A8Z637_SULMW Length = 146 Score = 67.8 bits (164), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 40/142 (28%), Positives = 76/142 (53%), Gaps = 9/142 (6%) Query: 16 LNKRARHEYFIEE-----EFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANI 70 LN R YF E +F AG+ L G EVKS++ ++++SY L ++F I Sbjct: 5 LNINNRRAYFDYELINKYKFIAGIELLGSEVKSIKNNNVSLNNSYCKLIKNNIYVFDMYI 64 Query: 71 TPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYW-KNAWCKVKIGV 129 + + + +P R +KLLL ++E++ +Y ++N ++ +++ + + K+ + Sbjct: 65 SNYLLG---INFNPKRVKKLLLKRKEINFIYNKINELKLNIIPTNIFLNERGYIKLIFFL 121 Query: 130 AKGKKQHDKRSDIKEREWQVDK 151 AK KK +DKR IK + ++ +K Sbjct: 122 AKSKKNYDKRQSIKNKYFEREK 143 >UniRef50_Q4A5T2 SsrA-binding protein n=2 Tax=Mycoplasma RepID=SSRP_MYCS5 Length = 143 Score = 63.9 bits (154), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/125 (30%), Positives = 69/125 (55%), Gaps = 6/125 (4%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPM 73 IA NK A+ Y I + FEAG+ L+GWEVKS RA + ++Y + E FL + Sbjct: 4 IATNKNAKRNYEILKTFEAGIKLEGWEVKSARASSVELKNAYCSIYKDEVFLKESYFKKY 63 Query: 74 AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK-NAWCKVKIGVAKG 132 + + T+ RKLLL+++E+ + + + +++ +Y+ N+ KV++ + +G Sbjct: 64 MLLKV----EETKNRKLLLHKKEILKIKQELQK-NLSLIPTKIYFNSNSLIKVELALGRG 118 Query: 133 KKQHD 137 K++D Sbjct: 119 LKKYD 123 >UniRef50_Q7P475 Small protein B n=1 Tax=Fusobacterium nucleatum subsp. vincentii ATCC 49256 RepID=Q7P475_FUSNV Length = 84 Score = 61.6 bits (148), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 28/59 (47%), Positives = 44/59 (74%) Query: 13 TIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANIT 71 IA NK+A +YFIEE++EAG+ L+G EVKS++AGK +I +S+V + + E F+ G ++ Sbjct: 2 IIANNKKAFFDYFIEEKYEAGIELKGSEVKSIKAGKVSIKESFVRIINDEIFIMGMSVV 60 >UniRef50_D0N0I1 Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0N0I1_PHYIN Length = 180 Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 2/130 (1%) Query: 18 KRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPMAVAS 77 K A + Y +E E+ G+ LQ EVKSLR A++S ++ E FL NI P+ Sbjct: 44 KAAGNYYEVEREWNLGIVLQPSEVKSLRNRNADLSTAFGAFYKHELFLHDLNI-PVWRQG 102 Query: 78 THVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN-AWCKVKIGVAKGKKQH 136 +PTR RKLL N+ EL L NR ++ + + N W KV + + Q Sbjct: 103 LIGRPEPTRVRKLLANRSELKKLQEFANRPNAQLIPMRIEVGNTGWIKVIMAACFKRGQI 162 Query: 137 DKRSDIKERE 146 D R ERE Sbjct: 163 DNRRRDDERE 172 >UniRef50_C7LKD3 SsrA (TmRNA)-binding protein n=1 Tax=Candidatus Sulcia muelleri SMDSEM RepID=C7LKD3_SULMS Length = 150 Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 71/127 (55%), Gaps = 5/127 (3%) Query: 17 NKRARHEYFI--EEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPMA 74 NK+A +Y + +E+F AG+ L G EVK ++ K +I +SY L + ++F I+ Sbjct: 7 NKKAGFDYNLLKKEKFLAGIELLGIEVKLIKQKKVSIKNSYCKLINNNIYIFDMYISNSN 66 Query: 75 VASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN-AWCKVKIGVAKGK 133 + +T P R RKLLL ++E++ + ++ ++ + N + K+K +AK K Sbjct: 67 IYNTKF--SPKRRRKLLLKKKEINQIKKQIKNLNLNIIPTEIVLNNRNFIKIKFFLAKSK 124 Query: 134 KQHDKRS 140 K+++KR+ Sbjct: 125 KKYEKRN 131 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_B5F2A0 SsrA-binding protein n=362 Tax=Proteobacteria Re... 238 4e-62 UniRef50_Q3MAP3 SsrA-binding protein n=12 Tax=Cyanobacteria RepI... 226 2e-58 UniRef50_A5UPS2 SsrA-binding protein n=171 Tax=Bacteria RepID=SS... 224 7e-58 UniRef50_A9WJ45 SsrA-binding protein n=32 Tax=Bacteria RepID=SSR... 218 5e-56 UniRef50_A4J8T4 SsrA-binding protein n=14 Tax=Bacteria RepID=SSR... 215 4e-55 UniRef50_A1TSJ4 SsrA-binding protein n=6 Tax=Proteobacteria RepI... 214 6e-55 UniRef50_A0PYP8 SsrA-binding protein n=125 Tax=Bacteria RepID=SS... 214 6e-55 UniRef50_Q12AT7 SsrA-binding protein n=8 Tax=Burkholderiales Rep... 214 7e-55 UniRef50_B7IP12 SsrA-binding protein n=102 Tax=Bacteria RepID=SS... 214 7e-55 UniRef50_Q3JBU6 SsrA-binding protein n=47 Tax=Proteobacteria Rep... 213 1e-54 UniRef50_A0QU63 SsrA-binding protein n=25 Tax=Bacteria RepID=SSR... 212 2e-54 UniRef50_A3PWV5 SsrA-binding protein n=83 Tax=cellular organisms... 211 6e-54 UniRef50_Q2RLS9 SsrA-binding protein n=8 Tax=Clostridia RepID=SS... 211 6e-54 UniRef50_C9KNB2 SsrA-binding protein n=1 Tax=Mitsuokella multaci... 211 9e-54 UniRef50_A5G3A5 SsrA-binding protein n=5 Tax=Bacteria RepID=SSRP... 211 9e-54 UniRef50_A1WX40 SsrA-binding protein n=13 Tax=Gammaproteobacteri... 210 1e-53 UniRef50_B1MEU3 SsrA-binding protein n=68 Tax=Bacteria RepID=SSR... 209 2e-53 UniRef50_C8W8A6 SsrA-binding protein n=5 Tax=Coriobacteriaceae R... 209 2e-53 UniRef50_Q72DV1 SsrA-binding protein n=12 Tax=Bacteria RepID=SSR... 209 4e-53 UniRef50_B0TLG2 SsrA-binding protein n=12 Tax=Proteobacteria Rep... 208 5e-53 UniRef50_C7M112 SsrA-binding protein n=1 Tax=Acidimicrobium ferr... 208 6e-53 UniRef50_Q4JX42 SsrA-binding protein n=87 Tax=Bacteria RepID=SSR... 207 9e-53 UniRef50_A1WPQ3 SsrA-binding protein n=5 Tax=Proteobacteria RepI... 207 1e-52 UniRef50_Q03AJ7 SsrA-binding protein n=110 Tax=Bacteria RepID=SS... 207 1e-52 UniRef50_B8H482 SsrA-binding protein n=83 Tax=Proteobacteria Rep... 206 1e-52 UniRef50_A1KN98 SsrA-binding protein n=62 Tax=Bacteria RepID=SSR... 206 2e-52 UniRef50_A8SP47 Putative uncharacterized protein n=2 Tax=Bacteri... 206 2e-52 UniRef50_Q1H274 SsrA-binding protein n=29 Tax=Bacteria RepID=SSR... 205 3e-52 UniRef50_Q2N9K0 SsrA-binding protein n=85 Tax=cellular organisms... 205 4e-52 UniRef50_D1BK11 SsrA-binding protein n=20 Tax=Bacteria RepID=D1B... 203 1e-51 UniRef50_B2V9T6 SsrA-binding protein n=7 Tax=Bacteria RepID=SSRP... 203 1e-51 UniRef50_C8PPG5 SsrA-binding protein n=1 Tax=Treponema vincentii... 203 2e-51 UniRef50_C4Z0S0 SsrA-binding protein n=22 Tax=Bacteria RepID=C4Z... 202 3e-51 UniRef50_A0LGB7 SsrA-binding protein n=7 Tax=Bacteria RepID=SSRP... 201 8e-51 UniRef50_B2UY12 SsrA-binding protein n=24 Tax=Bacteria RepID=SSR... 201 9e-51 UniRef50_A3ZLQ9 SsrA-binding protein n=2 Tax=Planctomycetaceae R... 199 2e-50 UniRef50_D2RBT7 SsrA-binding protein n=3 Tax=Bacteria RepID=D2RB... 198 5e-50 UniRef50_B2S2D1 SsrA-binding protein n=2 Tax=Treponema pallidum ... 198 6e-50 UniRef50_A5EXZ5 SsrA-binding protein n=4 Tax=Proteobacteria RepI... 197 9e-50 UniRef50_C0QVL0 SsrA-binding protein n=2 Tax=Brachyspira RepID=C... 196 2e-49 UniRef50_C1F4B8 SsrA-binding protein n=1 Tax=Acidobacterium caps... 196 2e-49 UniRef50_D1U5X0 SsrA-binding protein n=2 Tax=Desulfovibrio RepID... 196 2e-49 UniRef50_Q3ZZ31 SsrA-binding protein n=6 Tax=Bacteria RepID=SSRP... 196 3e-49 UniRef50_D2R3D1 SsrA-binding protein n=1 Tax=Pirellula staleyi D... 195 4e-49 UniRef50_A7HGZ0 SsrA-binding protein n=8 Tax=Bacteria RepID=SSRP... 195 5e-49 UniRef50_Q7UZP2 SsrA-binding protein n=33 Tax=cellular organisms... 195 5e-49 UniRef50_A9NF97 SsrA-binding protein n=1 Tax=Acholeplasma laidla... 194 7e-49 UniRef50_Q2GCW3 SsrA-binding protein n=2 Tax=Neorickettsia RepID... 192 3e-48 UniRef50_Q1GDQ2 SsrA-binding protein n=12 Tax=Rhodobacterales Re... 192 3e-48 UniRef50_A9G109 SsrA-binding protein n=1 Tax=Sorangium cellulosu... 192 4e-48 UniRef50_Q04E23 SsrA-binding protein n=4 Tax=Lactobacillales Rep... 191 6e-48 UniRef50_Q7UH38 SsrA-binding protein n=1 Tax=Rhodopirellula balt... 191 6e-48 UniRef50_A6G542 SsrA-binding protein n=2 Tax=Proteobacteria RepI... 191 6e-48 UniRef50_Q1MRU5 SsrA-binding protein n=5 Tax=Desulfovibrionales ... 191 6e-48 UniRef50_C1ZDG5 SsrA-binding protein n=1 Tax=Planctomyces limnop... 190 2e-47 UniRef50_D2PSC9 SsrA-binding protein n=1 Tax=Kribbella flavida D... 189 2e-47 UniRef50_Q1IQ53 SsrA-binding protein n=1 Tax=Candidatus Koribact... 189 2e-47 UniRef50_B2KCF8 SsrA-binding protein n=1 Tax=Elusimicrobium minu... 189 3e-47 UniRef50_Q9Z8K1 SsrA-binding protein n=2 Tax=Chlamydophila pneum... 188 5e-47 UniRef50_Q254F5 SsrA-binding protein n=1 Tax=Chlamydophila felis... 188 5e-47 UniRef50_B2ULK9 SsrA-binding protein n=3 Tax=Verrucomicrobia Rep... 188 6e-47 UniRef50_Q2S237 SsrA-binding protein n=1 Tax=Salinibacter ruber ... 188 6e-47 UniRef50_A5FZS6 SsrA-binding protein n=11 Tax=Alphaproteobacteri... 187 8e-47 UniRef50_D1NAK5 SsrA-binding protein n=1 Tax=Victivallis vadensi... 185 3e-46 UniRef50_C7JH78 Trans-translation helper factor SmpB n=8 Tax=Ace... 185 3e-46 UniRef50_C9LGK2 SsrA-binding protein n=8 Tax=Prevotella RepID=C9... 184 6e-46 UniRef50_C2D8P0 TmRNA-binding protein n=2 Tax=Coriobacteriaceae ... 184 6e-46 UniRef50_A9BF44 SsrA-binding protein n=3 Tax=Bacteria RepID=SSRP... 184 7e-46 UniRef50_C6HYH8 SsrA-binding protein n=1 Tax=Leptospirillum ferr... 184 1e-45 UniRef50_A6DIW5 SsrA-binding protein n=2 Tax=Bacteria RepID=A6DI... 183 1e-45 UniRef50_Q6MAG8 SsrA-binding protein n=4 Tax=Chlamydiales RepID=... 183 2e-45 UniRef50_A0FD64 TmRNA-binding protein n=1 Tax=Coxiella endosymbi... 182 2e-45 UniRef50_B3DV24 TmRNA-binding protein n=1 Tax=Methylacidiphilum ... 182 3e-45 UniRef50_B9XT05 SsrA-binding protein n=1 Tax=bacterium Ellin514 ... 182 3e-45 UniRef50_A6L927 SsrA-binding protein n=17 Tax=Bacteria RepID=SSR... 182 4e-45 UniRef50_Q83N13 SsrA-binding protein n=2 Tax=Tropheryma whipplei... 181 5e-45 UniRef50_B2GAM5 SsrA-binding protein n=4 Tax=Bacteria RepID=SSRP... 181 5e-45 UniRef50_Q04TV5 SsrA-binding protein n=6 Tax=Leptospira RepID=SS... 181 5e-45 UniRef50_D1VZH7 SsrA-binding protein n=1 Tax=Prevotella timonens... 180 1e-44 UniRef50_C0JZT0 SsrA-binding protein n=1 Tax=uncultured bacteriu... 180 1e-44 UniRef50_Q6MQ46 SsrA-binding protein n=1 Tax=Bdellovibrio bacter... 180 1e-44 UniRef50_C9RKN3 SsrA-binding protein n=1 Tax=Fibrobacter succino... 179 2e-44 UniRef50_Q02A69 SsrA-binding protein n=1 Tax=Candidatus Solibact... 179 3e-44 UniRef50_B8D947 SsrA-binding protein n=4 Tax=Buchnera aphidicola... 179 4e-44 UniRef50_A8EWH6 SsrA-binding protein n=48 Tax=Epsilonproteobacte... 177 7e-44 UniRef50_C5JAN1 SsrA-binding protein n=1 Tax=uncultured bacteriu... 177 8e-44 UniRef50_Q2ST23 SsrA-binding protein n=4 Tax=Mollicutes RepID=SS... 177 1e-43 UniRef50_Q3ARF1 SsrA-binding protein n=11 Tax=Chlorobiaceae RepI... 177 1e-43 UniRef50_B1AI43 SsrA-binding protein n=16 Tax=Mycoplasmataceae R... 177 1e-43 UniRef50_B7KVC8 SsrA-binding protein n=25 Tax=cellular organisms... 176 2e-43 UniRef50_A0M3P0 SsrA-binding protein n=13 Tax=Bacteroidetes RepI... 174 7e-43 UniRef50_B7GAQ2 Predicted protein (Fragment) n=3 Tax=Bacillariop... 172 2e-42 UniRef50_B3EUI8 SsrA-binding protein n=4 Tax=Bacteroidetes RepID... 172 4e-42 UniRef50_Q11TP3 SsrA-binding protein n=36 Tax=Bacteroidetes RepI... 169 3e-41 UniRef50_B1GZD8 SsrA-binding protein SmpB n=1 Tax=uncultured Ter... 167 1e-40 UniRef50_Q6Q8U8 Predicted SsrA n=1 Tax=uncultured marine gamma p... 166 2e-40 UniRef50_UPI00016992A0 SsrA-binding protein n=1 Tax=Endoriftia p... 165 3e-40 UniRef50_Q89AM9 SsrA-binding protein n=1 Tax=Buchnera aphidicola... 165 4e-40 UniRef50_P75043 SsrA-binding protein n=2 Tax=Mycoplasma RepID=SS... 164 8e-40 UniRef50_B1VAG4 SsrA-binding protein n=2 Tax=Candidatus Phytopla... 164 1e-39 UniRef50_C6X237 TmRNA-binding protein SmpB n=2 Tax=Flavobacteria... 164 1e-39 UniRef50_Q1LSR7 SsrA-binding protein n=17 Tax=Gammaproteobacteri... 162 4e-39 UniRef50_Q0SPD1 SsrA-binding protein n=20 Tax=Borrelia RepID=SSR... 159 3e-38 UniRef50_Q7VRQ2 TmRNA-binding protein n=2 Tax=Candidatus Blochma... 157 9e-38 UniRef50_A5KSW6 SsrA-binding protein n=2 Tax=candidate division ... 157 2e-37 UniRef50_Q6YR70 SsrA-binding protein n=3 Tax=Candidatus Phytopla... 156 3e-37 UniRef50_Q601U1 SsrA-binding protein n=3 Tax=Mycoplasma hyopneum... 153 2e-36 UniRef50_B3PM30 SsrA-binding protein n=2 Tax=Mycoplasma RepID=B3... 151 9e-36 UniRef50_Q6KI26 SsrA-binding protein n=1 Tax=Mycoplasma mobile R... 149 3e-35 UniRef50_A9G6R4 SmpB-like protein n=1 Tax=Sorangium cellulosum '... 149 4e-35 UniRef50_Q7NB37 SsrA-binding protein n=1 Tax=Mycoplasma gallisep... 148 6e-35 UniRef50_Q057R8 TmRNA-binding protein n=1 Tax=Buchnera aphidicol... 147 1e-34 UniRef50_C1D1M8 Putative SsrA-binding protein n=1 Tax=Deinococcu... 144 1e-33 UniRef50_A5IZI0 SsrA-binding protein n=3 Tax=Mycoplasma RepID=SS... 141 9e-33 UniRef50_Q8D389 SmpB protein n=1 Tax=Wigglesworthia glossinidia ... 138 4e-32 UniRef50_A8Z637 SsrA (TmRNA)-binding protein n=2 Tax=Candidatus ... 133 2e-30 UniRef50_Q4A5T2 SsrA-binding protein n=2 Tax=Mycoplasma RepID=SS... 128 4e-29 UniRef50_D0N0I1 Putative uncharacterized protein n=1 Tax=Phytoph... 125 5e-28 UniRef50_C6SHY7 SsrA-binding protein n=1 Tax=Neisseria meningiti... 122 4e-27 UniRef50_C7LKD3 SsrA (TmRNA)-binding protein n=1 Tax=Candidatus ... 88 1e-16 UniRef50_Q7P475 Small protein B n=1 Tax=Fusobacterium nucleatum ... 84 2e-15 UniRef50_UPI0001912596 SsrA-binding protein n=1 Tax=Salmonella e... 65 6e-10 Sequences not found previously or not previously below threshold: UniRef50_Q05FT0 Putative uncharacterized protein n=1 Tax=Candida... 43 0.003 CONVERGED! >UniRef50_B5F2A0 SsrA-binding protein n=362 Tax=Proteobacteria RepID=SSRP_SALA4 Length = 160 Score = 238 bits (609), Expect = 4e-62, Method: Composition-based stats. Identities = 151/160 (94%), Positives = 157/160 (98%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANI DSYV+L+D Sbjct: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANIGDSYVILKD 60 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 GEA+LFGAN TPMAVASTHVVCDPTRTRKLLLNQRELDSLYGR+NREGYTVVALSLYWKN Sbjct: 61 GEAWLFGANFTPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRINREGYTVVALSLYWKN 120 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 AWCKVKIGVAKGKKQHDKRSD+KEREWQ+DKARIMKNA R Sbjct: 121 AWCKVKIGVAKGKKQHDKRSDLKEREWQLDKARIMKNAGR 160 >UniRef50_Q3MAP3 SsrA-binding protein n=12 Tax=Cyanobacteria RepID=SSRP_ANAVT Length = 155 Score = 226 bits (576), Expect = 2e-58, Method: Composition-based stats. Identities = 72/155 (46%), Positives = 96/155 (61%) Query: 4 KKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEA 63 I N++AR+ Y I E FEAG+ L G EVKS+RAGK N+ D Y LLRDGE Sbjct: 1 MSDKSESYKVITDNRQARYLYEILETFEAGIQLTGTEVKSIRAGKVNLQDGYALLRDGEI 60 Query: 64 FLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWC 123 +L A+I+P + + +P RTRKLLL+++E+ L G+V ++G T+V L +Y K W Sbjct: 61 WLINAHISPYNASGQYFNHEPRRTRKLLLHRQEIRKLIGKVEQQGLTLVPLKMYLKRGWV 120 Query: 124 KVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNA 158 KV I + KGKK HDKR +K R+ Q D R MKN Sbjct: 121 KVSIALGKGKKLHDKRESLKRRQDQRDIQRAMKNY 155 >UniRef50_A5UPS2 SsrA-binding protein n=171 Tax=Bacteria RepID=SSRP_ROSS1 Length = 158 Score = 224 bits (572), Expect = 7e-58, Method: Composition-based stats. Identities = 71/150 (47%), Positives = 102/150 (68%) Query: 11 SATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANI 70 +A N++ARH+YFIEE +EAG+AL G E+KS+RAG+ N+ YV + DGEA+L+ +I Sbjct: 8 ERVVADNRKARHDYFIEETYEAGIALTGSEIKSIRAGQVNLRGGYVRIVDGEAWLYDVHI 67 Query: 71 TPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVA 130 P + + +PTR RKLLL++RE+ + G+V R+GYT+V L LY + KV+IG+A Sbjct: 68 APYEQSGAYFNHEPTRPRKLLLHRREISRIAGQVERQGYTLVPLRLYLRGRRAKVEIGLA 127 Query: 131 KGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 +GKK +DKR DI RE + D R +K R Sbjct: 128 RGKKLYDKRDDIARREARRDIERALKERTR 157 >UniRef50_A9WJ45 SsrA-binding protein n=32 Tax=Bacteria RepID=SSRP_CHLAA Length = 160 Score = 218 bits (556), Expect = 5e-56, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 100/158 (63%), Gaps = 2/158 (1%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 MT K PG +A N++ARH+Y IEE EAG+ L G E+KS+RAG+ N+ S+ + D Sbjct: 1 MTATKHKHPG--VVAENRKARHDYDIEETIEAGIVLSGSEIKSVRAGRVNLRGSFARVID 58 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 E FL+ A+I P + + DP R RKLLL++RE++ L G V +G T+V L +Y+K Sbjct: 59 DEVFLYDAHIAPYEQSGKYFNHDPMRPRKLLLHRREINRLNGLVRMKGMTLVPLKVYFKG 118 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNA 158 KV++GVA+GKK +DKR DI R+ D R +K A Sbjct: 119 RRAKVELGVARGKKIYDKREDIARRDAARDIDRALKRA 156 >UniRef50_A4J8T4 SsrA-binding protein n=14 Tax=Bacteria RepID=SSRP_DESRM Length = 161 Score = 215 bits (549), Expect = 4e-55, Method: Composition-based stats. Identities = 65/161 (40%), Positives = 101/161 (62%), Gaps = 2/161 (1%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M K + G TI N+RARHEY + E +EAG+AL G EVKSLRAGKAN+ D++ + + Sbjct: 1 MAAKATSEKGFKTITDNRRARHEYHVIETYEAGIALSGTEVKSLRAGKANLQDAFARVEN 60 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 GE L+ +I+P + +P RTR+LL++++E+ LYG+V +G ++ L +Y+ Sbjct: 61 GEMMLYNLHISPYEQGN-RFNHEPKRTRRLLMHKQEILRLYGKVREKGLALIPLKVYFNP 119 Query: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 KV++ +A+GKK +DKR DI R+ + D R M+ + Sbjct: 120 RGKVKVQLALAQGKKSYDKRHDIAARDAKRDMDRAMRERQK 160 >UniRef50_A1TSJ4 SsrA-binding protein n=6 Tax=Proteobacteria RepID=SSRP_ACIAC Length = 157 Score = 214 bits (547), Expect = 6e-55, Method: Composition-based stats. Identities = 78/160 (48%), Positives = 104/160 (65%), Gaps = 3/160 (1%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M KK IA NK+A YF EE EAG+ L GWEVK+LR GK ++D YV++R+ Sbjct: 1 MAKKPETLSR---IADNKKAAFNYFFEERHEAGMVLHGWEVKALREGKVQLTDGYVVIRE 57 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 GE +L G I P+ ASTHV D RT+KLLL++ E+ L +V ++GYT+V L+L+W N Sbjct: 58 GELYLIGCQINPLKTASTHVSPDAVRTKKLLLHKDEIKRLTAKVEQKGYTLVPLNLHWTN 117 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 K +I +AKGK +HDKR IKERE + + R MK+ HR Sbjct: 118 GRAKCEIALAKGKAEHDKRDTIKEREGKREVERAMKSRHR 157 >UniRef50_A0PYP8 SsrA-binding protein n=125 Tax=Bacteria RepID=SSRP_CLONN Length = 157 Score = 214 bits (547), Expect = 6e-55, Method: Composition-based stats. Identities = 74/160 (46%), Positives = 103/160 (64%), Gaps = 4/160 (2%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M KK + T+A N++A H+YFIEE FEAG+AL G EVKS+R GKAN+ DSY +R+ Sbjct: 1 MGKKDKK---NNTLAQNRKAYHDYFIEETFEAGIALVGTEVKSIRGGKANLKDSYASIRN 57 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 GE F+ +++P + DP R RKLLL++ ++++L G ++GYT++ LSLY KN Sbjct: 58 GEVFVCNMHVSPYEQGNI-FNRDPLRERKLLLHKSQINTLLGYTAQQGYTLIPLSLYLKN 116 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 KV +GVAKGKK +DKR I + + D R MK R Sbjct: 117 GRVKVALGVAKGKKNYDKRDAIAAKAAKRDIDRQMKERMR 156 >UniRef50_Q12AT7 SsrA-binding protein n=8 Tax=Burkholderiales RepID=SSRP_POLSJ Length = 149 Score = 214 bits (547), Expect = 7e-55, Method: Composition-based stats. Identities = 73/147 (49%), Positives = 103/147 (70%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPM 73 IA NK+A Y IEE FEAG+ L+GWEVKS+R GK ++D YV++R GE F+ G I P+ Sbjct: 3 IADNKKAIFNYHIEERFEAGMVLEGWEVKSVREGKVQLTDGYVVIRGGELFIIGCQINPL 62 Query: 74 AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGK 133 ASTHV D RT+KLL+++ E+ L G+V ++G+T+V L+++WK K +IG+AKGK Sbjct: 63 GTASTHVRPDSVRTKKLLMHKDEIRRLVGKVEQKGFTLVPLNMHWKAGKVKCEIGLAKGK 122 Query: 134 KQHDKRSDIKEREWQVDKARIMKNAHR 160 +HDKR IK+RE + + R MK+ R Sbjct: 123 GEHDKRDTIKDREGKREVERAMKSRSR 149 >UniRef50_B7IP12 SsrA-binding protein n=102 Tax=Bacteria RepID=SSRP_BACC2 Length = 155 Score = 214 bits (546), Expect = 7e-55, Method: Composition-based stats. Identities = 67/153 (43%), Positives = 101/153 (66%), Gaps = 1/153 (0%) Query: 8 KPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFG 67 K IA NK+A H+YFIEE +EAGL LQG E+KS+RAG+ N+ D++ + +GE ++ Sbjct: 3 KGTGKVIAQNKKAFHDYFIEETYEAGLVLQGTEIKSIRAGRVNLKDAFARIHNGEVWVHN 62 Query: 68 ANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKI 127 +I + DP RTRKLLL+++E+D L G GY +V L +Y KN + K+ + Sbjct: 63 MHINTYEQGN-RFNHDPLRTRKLLLHKKEIDKLAGAAKETGYALVPLRIYLKNGFAKMAL 121 Query: 128 GVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 G+AKGKKQ+DKR D+KE+E + + AR+ ++ + Sbjct: 122 GLAKGKKQYDKRHDLKEKEAKREIARVFRDRQK 154 >UniRef50_Q3JBU6 SsrA-binding protein n=47 Tax=Proteobacteria RepID=SSRP_NITOC Length = 189 Score = 213 bits (544), Expect = 1e-54, Method: Composition-based stats. Identities = 77/145 (53%), Positives = 109/145 (75%) Query: 12 ATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANIT 71 IALN++ARH+YFIEE +EAGL L+GWEVKSLRAG+ +++ Y LL+ GE +LFG +++ Sbjct: 14 NVIALNRKARHDYFIEERYEAGLVLEGWEVKSLRAGRVQLNEGYCLLKGGEVWLFGVHLS 73 Query: 72 PMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAK 131 P+ STH+ DP RTRKLLL+ +EL L G V R+GY ++ L+LYWK K++I +AK Sbjct: 74 PLNTVSTHIHPDPLRTRKLLLHAKELRKLIGAVERKGYALIPLTLYWKRGRVKLEIALAK 133 Query: 132 GKKQHDKRSDIKEREWQVDKARIMK 156 GK+++DKR+ KE+EW K R++K Sbjct: 134 GKQKYDKRATEKEKEWTRQKERLLK 158 >UniRef50_A0QU63 SsrA-binding protein n=25 Tax=Bacteria RepID=SSRP_MYCS2 Length = 161 Score = 212 bits (542), Expect = 2e-54, Method: Composition-based stats. Identities = 60/160 (37%), Positives = 98/160 (61%), Gaps = 2/160 (1%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 MTKK A + +A N++ARH Y I + +EAG+ L G EVKSLR G+A+++D++ + D Sbjct: 1 MTKKSAS-SNNKVVATNRKARHNYTILDTYEAGIVLMGTEVKSLREGQASLADAFATVDD 59 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 GE +L +I T P R RKLLL+++++D+L G++ T+V LS+Y+ + Sbjct: 60 GEIWLRNVHIAEY-HHGTWTNHAPRRNRKLLLHRKQIDNLIGKIRDGNLTLVPLSIYFTD 118 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 KV++ +A+GK+ HDKR D+ R+ Q + R + + Sbjct: 119 GKVKVELALARGKQAHDKRQDLARRDAQREVIRELGRRAK 158 >UniRef50_A3PWV5 SsrA-binding protein n=83 Tax=cellular organisms RepID=SSRP_MYCSJ Length = 168 Score = 211 bits (538), Expect = 6e-54, Method: Composition-based stats. Identities = 59/155 (38%), Positives = 93/155 (60%), Gaps = 1/155 (0%) Query: 6 AHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFL 65 + +A N+RARH Y I + +EAG+AL G EVKSLR G+A+++D++ + DGE +L Sbjct: 12 TKDRNNQVVASNRRARHNYAILDTYEAGIALMGTEVKSLRDGQASLADAFATVDDGEIWL 71 Query: 66 FGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKV 125 +I S P R RKLLL++RE+D+L G++ T+V LSLY+ KV Sbjct: 72 RNLHIPEYQHGS-WTNHAPRRNRKLLLHRREIDNLIGKIRDGNLTLVPLSLYFTGGKVKV 130 Query: 126 KIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 ++ +A+GK+ HDKR D+ R+ + + R + + Sbjct: 131 ELALARGKQAHDKRQDLARRDAEREVVRELGRRAK 165 >UniRef50_Q2RLS9 SsrA-binding protein n=8 Tax=Clostridia RepID=SSRP_MOOTA Length = 155 Score = 211 bits (538), Expect = 6e-54, Method: Composition-based stats. Identities = 62/150 (41%), Positives = 95/150 (63%), Gaps = 2/150 (1%) Query: 12 ATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANIT 71 + N+RARH+YFIEE +EAG+AL G EVKSLR G+ANI DSY + +GE L +I+ Sbjct: 6 KVVTDNRRARHDYFIEETYEAGIALTGTEVKSLRNGRANIKDSYARVENGELILHDMHIS 65 Query: 72 PMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK-NAWCKVKIGVA 130 P + +P R R+LL+++ E+ LYG+V +G T++ L +Y+ KV++ + Sbjct: 66 PYEQGN-RFNHEPRRPRRLLMHRYEIQRLYGKVREKGLTLIPLKVYFNERGLAKVELALV 124 Query: 131 KGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 KGK+ +DKR DI R+ Q + AR ++ + Sbjct: 125 KGKRLYDKREDIAARDAQREIARALRERQK 154 >UniRef50_C9KNB2 SsrA-binding protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KNB2_9FIRM Length = 157 Score = 211 bits (537), Expect = 9e-54, Method: Composition-based stats. Identities = 66/160 (41%), Positives = 103/160 (64%), Gaps = 4/160 (2%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M +K A G T+ N++ARH+YFI E +EAG+ALQG EVKSLRAG+AN+ DSY +++ Sbjct: 1 MGRKNA---GIKTVCENRKARHDYFIHETYEAGIALQGTEVKSLRAGRANLKDSYASIQN 57 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 GE F+ +I+P + DP R RKLL+++ E+ L+ + +G+T+V L +Y+K Sbjct: 58 GEIFVENLHISPYDQGNI-FNHDPLRRRKLLMHKAEIVKLFAKTREKGFTLVPLKIYFKQ 116 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 K++I +A GK +DKR D+ E+ + + R +K+ R Sbjct: 117 GRAKMEIALASGKHNYDKRQDLHEKAAKREIERALKDRQR 156 >UniRef50_A5G3A5 SsrA-binding protein n=5 Tax=Bacteria RepID=SSRP_GEOUR Length = 151 Score = 211 bits (537), Expect = 9e-54, Method: Composition-based stats. Identities = 72/151 (47%), Positives = 106/151 (70%), Gaps = 1/151 (0%) Query: 10 GSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGAN 69 I NK+A H+YFIEE+FEAG+ L+G EVKSLR GKAN++DS+ L+++GEAFL + Sbjct: 2 SEKLICNNKKAYHDYFIEEKFEAGMVLKGTEVKSLRIGKANLNDSFALVKNGEAFLHNLH 61 Query: 70 ITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGV 129 I+P + DP R RKLLL+++E+ L+ + +GYTVV L LY+K+ KV++G+ Sbjct: 62 ISPYDFGNRE-NHDPDRMRKLLLHKKEIGKLFSMIREQGYTVVPLRLYFKDGLVKVEVGL 120 Query: 130 AKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 AKGKK +DKR D+K+++ + D A +K +R Sbjct: 121 AKGKKLYDKREDMKKKDMRRDVAVALKERNR 151 >UniRef50_A1WX40 SsrA-binding protein n=13 Tax=Gammaproteobacteria RepID=SSRP_HALHL Length = 165 Score = 210 bits (536), Expect = 1e-53, Method: Composition-based stats. Identities = 87/154 (56%), Positives = 121/154 (78%) Query: 5 KAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAF 64 K+ K IALN++A ++F+EE EAGLAL+GWEVK+LRA + N+++S+VL+R GEA+ Sbjct: 10 KSKKTEGNVIALNRKAGFDFFVEERLEAGLALEGWEVKALRAKRVNLTESHVLVRRGEAW 69 Query: 65 LFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCK 124 L G NITP++ ASTH+ DPTRTRKLLL++RE++ L G V+R+GYTVV L LYWK K Sbjct: 70 LIGCNITPLSTASTHIHPDPTRTRKLLLHRREINRLIGAVDRDGYTVVPLKLYWKRGRAK 129 Query: 125 VKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNA 158 ++IGVAKGKK+ DKR+D KE++WQ + R++K+ Sbjct: 130 IEIGVAKGKKKQDKRADKKEQDWQRQRERLLKHK 163 >UniRef50_B1MEU3 SsrA-binding protein n=68 Tax=Bacteria RepID=SSRP_MYCA9 Length = 159 Score = 209 bits (534), Expect = 2e-53, Method: Composition-based stats. Identities = 63/160 (39%), Positives = 95/160 (59%), Gaps = 3/160 (1%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M+KK A G IA N++ARH Y I + +EAG+ L G EVK+LR GKA++ D++ + D Sbjct: 1 MSKKPAD--GRKVIATNRKARHNYSIIDVYEAGVQLVGTEVKTLREGKASLVDAFATVDD 58 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 GE +L G +I T P R RKLLL++ ++D L G+ T+V LSLY+ + Sbjct: 59 GEVWLRGVHIPQYDH-GTWTNHAPLRNRKLLLHRAQIDMLVGKTRDGNLTLVPLSLYFLD 117 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 KV++ +A+GK+ HDKR DI +R+ + R + + Sbjct: 118 GKVKVELALARGKQAHDKRQDIAKRDASREITRELGRRAK 157 >UniRef50_C8W8A6 SsrA-binding protein n=5 Tax=Coriobacteriaceae RepID=C8W8A6_ATOPD Length = 161 Score = 209 bits (534), Expect = 2e-53, Method: Composition-based stats. Identities = 61/161 (37%), Positives = 98/161 (60%), Gaps = 2/161 (1%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M + + + G +IA N+ ARHEY I E FE GL L G EVKSLR ++D++ L+RD Sbjct: 1 MAENQVKQQGKKSIARNRSARHEYEIGETFECGLVLTGTEVKSLRERGCQLTDTFCLIRD 60 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYW-K 119 GEA++ G ++ P DP R RKLLL++R++D L G++ ++G +V L +Y+ + Sbjct: 61 GEAWIHGMHLHPYTNGGVW-NVDPDRKRKLLLHRRQIDYLDGKLRQKGLALVPLEIYFDE 119 Query: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 + K+ I +++GKK +DKR+ +R+ + R +K R Sbjct: 120 HNRVKLLIALSQGKKLYDKRASAAKRDSDREIQRALKERSR 160 >UniRef50_Q72DV1 SsrA-binding protein n=12 Tax=Bacteria RepID=SSRP_DESVH Length = 154 Score = 209 bits (532), Expect = 4e-53, Method: Composition-based stats. Identities = 74/155 (47%), Positives = 95/155 (61%), Gaps = 4/155 (2%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M+KK PG+ IA NK+ARH Y + + EAG++L G EVKSLRAG N DSYV R+ Sbjct: 1 MSKKA---PGANVIAQNKKARHIYELSDNHEAGISLTGSEVKSLRAGHVNFRDSYVDFRN 57 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 GEAFL G +I P A + DP R RKLLL+ E+++L V ++GYTVV LY+ Sbjct: 58 GEAFLVGLHIAPYDNAG-YAQHDPDRDRKLLLHAHEIENLARSVEQKGYTVVPTKLYFAR 116 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIM 155 KV I V +GKK HD+R D+K R D R + Sbjct: 117 GKVKVDIAVGRGKKLHDQREDLKRRAEDRDTQREL 151 >UniRef50_B0TLG2 SsrA-binding protein n=12 Tax=Proteobacteria RepID=SSRP_SHEHH Length = 164 Score = 208 bits (530), Expect = 5e-53, Method: Composition-based stats. Identities = 95/161 (59%), Positives = 124/161 (77%), Gaps = 3/161 (1%) Query: 1 MTKK--KAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLL 58 M KK K K SA+IA NKRA +Y EE+ EAGL+L GWEVKS+R GK N+S+SYV L Sbjct: 1 MAKKNAKNSKNSSASIARNKRATFDYKFEEKLEAGLSLMGWEVKSIRMGKVNLSESYVFL 60 Query: 59 RDGEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYW 118 R+GEA+LFG I P+ AS+HVVCDP R+RKLLL ++ELD L G V+R+GY++V +S+YW Sbjct: 61 REGEAYLFGCTIAPLNTASSHVVCDPLRSRKLLLKRKELDKLQGLVDRKGYSIVPISMYW 120 Query: 119 KNA-WCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNA 158 + W K++IG+ KGKK+HDKR D K+REWQ++KAR +K A Sbjct: 121 QKGAWVKIEIGLGKGKKEHDKRDDTKDREWQIEKARTIKKA 161 >UniRef50_C7M112 SsrA-binding protein n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M112_ACIFD Length = 171 Score = 208 bits (530), Expect = 6e-53, Method: Composition-based stats. Identities = 63/159 (39%), Positives = 96/159 (60%), Gaps = 1/159 (0%) Query: 2 TKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDG 61 K G +A N+RARH+Y + E FEAG+ L G EVK++R G + D+Y +RDG Sbjct: 8 PAKAQQLGGVRVLAQNRRARHDYDVLETFEAGIVLVGSEVKAVREGHVQLRDAYARIRDG 67 Query: 62 EAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNA 121 E FLF A I+P A+ R RKLLL++ E+D L GR+ +E T++ LSLY ++ Sbjct: 68 ELFLFQAVISPYRHATGFGTHVTDRPRKLLLHRDEIDRLRGRLEQERLTLIPLSLYLRDG 127 Query: 122 WCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 KV++ +AKG+ +DKR + R+ Q + R +++ +R Sbjct: 128 LVKVELALAKGRTLYDKRHVLATRDAQREVER-LRSRYR 165 >UniRef50_Q4JX42 SsrA-binding protein n=87 Tax=Bacteria RepID=SSRP_CORJK Length = 184 Score = 207 bits (528), Expect = 9e-53, Method: Composition-based stats. Identities = 62/151 (41%), Positives = 94/151 (62%), Gaps = 1/151 (0%) Query: 10 GSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGAN 69 G +A N++ARH+Y I + +E G+ L G EVKSLR GKA++ D+Y + +GE +L G + Sbjct: 31 GQIVVATNRKARHDYHIIDTYECGVVLVGTEVKSLREGKASLVDAYATIDEGEVWLRGLH 90 Query: 70 ITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGV 129 I ++ P RTRKLLL++RE+DSL G+V T+V L LY+ KV++ + Sbjct: 91 IPEYSMGH-WTNHSPRRTRKLLLHRREIDSLMGKVRDGNNTLVPLQLYFVAGKLKVELAL 149 Query: 130 AKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 A+GK+++DKR DIK R + + R M + Sbjct: 150 ARGKQEYDKRQDIKRRTEEREITREMGRRIK 180 >UniRef50_A1WPQ3 SsrA-binding protein n=5 Tax=Proteobacteria RepID=SSRP_VEREI Length = 157 Score = 207 bits (527), Expect = 1e-52, Method: Composition-based stats. Identities = 81/160 (50%), Positives = 111/160 (69%), Gaps = 3/160 (1%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 MTKK IA NK+A H+YF+EE +EAG+ L GWEVK+LRAGKA ++D YVL+RD Sbjct: 1 MTKKPDPASR---IADNKKAAHDYFLEERYEAGMVLHGWEVKALRAGKAQLTDGYVLIRD 57 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 GE FL G + + ASTHV + RT+KLLL + ++ L G+V ++GYT+V L+L+WKN Sbjct: 58 GELFLLGCQLQALKTASTHVSPEAARTKKLLLKKDDIRRLIGKVEQKGYTLVPLNLHWKN 117 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 K +I +A+GK QHDKR+ IKERE + + R +K+ R Sbjct: 118 GVVKCEIALARGKAQHDKRNSIKEREGKREVERALKSRSR 157 >UniRef50_Q03AJ7 SsrA-binding protein n=110 Tax=Bacteria RepID=SSRP_LACC3 Length = 157 Score = 207 bits (527), Expect = 1e-52, Method: Composition-based stats. Identities = 64/159 (40%), Positives = 98/159 (61%), Gaps = 2/159 (1%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M KK KP + +A NK+A H+Y I + +EAG+AL G E+KS+R GK N+ D + +R+ Sbjct: 1 MAKKHRQKPDN-LLAQNKKAGHDYNILDTYEAGIALTGTEIKSVRDGKLNLRDGFARIRN 59 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 EA+L +I+P + DP R RKLLL++RE+ L R+G T+V L +Y K+ Sbjct: 60 NEAWLENVHISPYKEGNL-FNVDPMRNRKLLLHKREIRKLGQMTARQGVTLVPLRMYLKH 118 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAH 159 + KV IGVA+GK +DKR +K ++ + + R +K + Sbjct: 119 GYAKVLIGVAEGKHNYDKRETLKRKDQEREVQRALKARY 157 >UniRef50_B8H482 SsrA-binding protein n=83 Tax=Proteobacteria RepID=SSRP_CAUCN Length = 152 Score = 206 bits (526), Expect = 1e-52, Method: Composition-based stats. Identities = 77/147 (52%), Positives = 99/147 (67%), Gaps = 2/147 (1%) Query: 11 SATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANI 70 S IA N+RAR +YFIEE FEAG+ L G EVKSLR G+ANI++SY + E L A+I Sbjct: 2 SKPIAENRRARFDYFIEETFEAGIMLTGTEVKSLRTGRANIAESYASVEGREIVLINADI 61 Query: 71 TPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK-NAWCKVKIGV 129 P A+ +P R RKLLL++R++D L G V REG T+V + LYW K+++G+ Sbjct: 62 PPYGHAN-RFNHEPRRHRKLLLHRRQIDKLIGAVQREGRTLVPIKLYWNDKGLAKLEVGL 120 Query: 130 AKGKKQHDKRSDIKEREWQVDKARIMK 156 AKGKK HDKR ER+WQ DKAR+MK Sbjct: 121 AKGKKLHDKRDTAAERDWQRDKARLMK 147 >UniRef50_A1KN98 SsrA-binding protein n=62 Tax=Bacteria RepID=SSRP_MYCBP Length = 160 Score = 206 bits (526), Expect = 2e-52, Method: Composition-based stats. Identities = 63/156 (40%), Positives = 98/156 (62%), Gaps = 1/156 (0%) Query: 5 KAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAF 64 K+ + G +A N++ARH Y I E FEAG+ALQG EVKSLR G+A+++DS+ + DGE + Sbjct: 3 KSSRGGRQIVASNRKARHNYSIIEVFEAGVALQGTEVKSLREGQASLADSFATIDDGEVW 62 Query: 65 LFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCK 124 L A+I S +P R RKLLL++R++D+L G++ + +V LSLY+ K Sbjct: 63 LRNAHIPEYRHGS-WTNHEPRRNRKLLLHRRQIDTLVGKIREGNFALVPLSLYFAEGKVK 121 Query: 125 VKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 V++ +A+GK+ DKR D+ R+ Q + R + + Sbjct: 122 VELALARGKQARDKRQDMARRDAQREVLRELGRRAK 157 >UniRef50_A8SP47 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A8SP47_9FIRM Length = 156 Score = 206 bits (525), Expect = 2e-52, Method: Composition-based stats. Identities = 66/155 (42%), Positives = 104/155 (67%), Gaps = 1/155 (0%) Query: 6 AHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFL 65 + + G+ IA NK+A HEYFIEE+FEAG+ L G EVKS+R G +I +++V + GE ++ Sbjct: 2 SKERGNTLIANNKKAYHEYFIEEKFEAGIELVGTEVKSIRQGHCSIKEAFVGIDHGEVYV 61 Query: 66 FGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKV 125 + N+ P + DP RTRKLLL++ E++ L G+ +GYT++ L +Y K+ K+ Sbjct: 62 YRMNVNPYERGNI-FNKDPLRTRKLLLHRYEINKLIGQQKVKGYTIMPLKVYIKDGLVKM 120 Query: 126 KIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 +IG+AKGKK +DKR DI +++ + + R +KN +R Sbjct: 121 EIGLAKGKKLYDKREDIAKKDMKREMERDLKNRNR 155 >UniRef50_Q1H274 SsrA-binding protein n=29 Tax=Bacteria RepID=SSRP_METFK Length = 154 Score = 205 bits (523), Expect = 3e-52, Method: Composition-based stats. Identities = 69/148 (46%), Positives = 108/148 (72%) Query: 13 TIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITP 72 +IA NK+A H+YFIEE++EAG+ L+GWEVK++R + + ++YV+++ GE +L G ++TP Sbjct: 2 SIAQNKKAFHDYFIEEKYEAGIVLEGWEVKAIRENRVQLKEAYVIIQRGEIYLIGCHVTP 61 Query: 73 MAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKG 132 + ASTHV D RTRKLLL+ ++ L G+V R GYT+V L +++ KV+IG+AKG Sbjct: 62 LGSASTHVRPDAIRTRKLLLHSEQIAKLIGKVERAGYTLVPLDMHYTRGRIKVQIGLAKG 121 Query: 133 KKQHDKRSDIKEREWQVDKARIMKNAHR 160 KKQ+DKR KE++W+ +++ +MK + Sbjct: 122 KKQYDKRHSEKEKDWKREQSSLMKKYVK 149 >UniRef50_Q2N9K0 SsrA-binding protein n=85 Tax=cellular organisms RepID=SSRP_ERYLH Length = 160 Score = 205 bits (522), Expect = 4e-52, Method: Composition-based stats. Identities = 75/160 (46%), Positives = 110/160 (68%), Gaps = 3/160 (1%) Query: 1 MTKKKAHK-PGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLR 59 M + K T+A N+RAR +Y +E++FEAG+ALQG EVK+LRAG+A+I++SY +R Sbjct: 1 MARPKPETFDKQKTVAENRRARFDYAVEDKFEAGIALQGTEVKALRAGEASIAESYAEVR 60 Query: 60 DGEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK 119 DGEA+L ANI + + + P R RKLLL+ RE++ L G V R+G T+V LS+Y+ Sbjct: 61 DGEAWLINANIPEYSHGN-RLNHQPRRPRKLLLHNREIERLLGAVERKGMTLVPLSIYFN 119 Query: 120 -NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNA 158 KV++ +AKG++ DKR IK+R+W+ DKARIM++ Sbjct: 120 SRGRAKVELALAKGRQAQDKREYIKDRDWKRDKARIMRDK 159 >UniRef50_D1BK11 SsrA-binding protein n=20 Tax=Bacteria RepID=D1BK11_SANKS Length = 176 Score = 203 bits (518), Expect = 1e-51, Method: Composition-based stats. Identities = 62/157 (39%), Positives = 98/157 (62%), Gaps = 1/157 (0%) Query: 2 TKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDG 61 + P A IA NK+ARH++ IE+ FEAG+ L G EVK+LRAG+A++ D YV + Sbjct: 18 KAPASSGPVRALIASNKKARHDFAIEDVFEAGMVLSGTEVKALRAGRASLVDGYVNIEGN 77 Query: 62 EAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNA 121 EA+L GA+I+ A T P R RKLLL++ E++ L +G+T+V L +Y+ + Sbjct: 78 EAWLEGAHISEYAH-GTWTNHAPRRKRKLLLHRSEIERLAQGTREKGFTIVPLQMYFLDG 136 Query: 122 WCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNA 158 KV+I +A+GKK++DKR ++E++ + R ++ Sbjct: 137 RAKVEIALARGKKEYDKRQTLREQQDNREAHRAIRQR 173 >UniRef50_B2V9T6 SsrA-binding protein n=7 Tax=Bacteria RepID=SSRP_SULSY Length = 152 Score = 203 bits (518), Expect = 1e-51, Method: Composition-based stats. Identities = 64/151 (42%), Positives = 98/151 (64%), Gaps = 1/151 (0%) Query: 10 GSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGAN 69 +A NK+A H+Y I E++EAG+ L G EVKSLR G N+ DS+V++ DGEA+L+ Sbjct: 2 SEKVVATNKKAFHDYAILEKYEAGIVLTGSEVKSLREGACNLKDSFVMIEDGEAWLYNCY 61 Query: 70 ITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGV 129 I P A+ DPTR RKLLL+++E+ L G+V +G T+V L +Y+KN KV+I + Sbjct: 62 IAPYKPAAK-FGHDPTRKRKLLLHKKEILKLMGKVKEKGLTIVPLRVYFKNGKAKVEIAL 120 Query: 130 AKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 AKGK +++KR +KE++ + + + K + Sbjct: 121 AKGKVKYEKREAMKEKDMKREIEKSFKGKIK 151 >UniRef50_C8PPG5 SsrA-binding protein n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PPG5_9SPIO Length = 200 Score = 203 bits (517), Expect = 2e-51, Method: Composition-based stats. Identities = 60/149 (40%), Positives = 88/149 (59%), Gaps = 1/149 (0%) Query: 12 ATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANIT 71 IA NK+A +Y IEE E G+ALQG E+KS+R G+ + DS+ + E +L +I+ Sbjct: 53 KIIAKNKKAHFDYSIEETIECGIALQGTEIKSVRDGRISFPDSFAEIIRNEVWLKNFHIS 112 Query: 72 PMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAK 131 +S DP R +KLLL++ E+ L + +GYT++ L Y K KV +G+ K Sbjct: 113 EYVYSSI-FNHDPDRPKKLLLHKDEIKRLTRKTEEKGYTLIPLEFYLKRGRIKVMLGICK 171 Query: 132 GKKQHDKRSDIKEREWQVDKARIMKNAHR 160 GKKQ DKR+DIKER+ + D R + +R Sbjct: 172 GKKQFDKRADIKERDIKRDMQRELHLKNR 200 >UniRef50_C4Z0S0 SsrA-binding protein n=22 Tax=Bacteria RepID=C4Z0S0_EUBE2 Length = 164 Score = 202 bits (515), Expect = 3e-51, Method: Composition-based stats. Identities = 65/155 (41%), Positives = 98/155 (63%), Gaps = 1/155 (0%) Query: 5 KAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAF 64 K G+ IA NK+A +YFIEE++EAG+ L G EVKS+RAGK +I +SY+ + +GE + Sbjct: 8 KTSASGNRLIANNKKAYFDYFIEEKYEAGMVLHGTEVKSIRAGKCSIKESYIKIENGEVY 67 Query: 65 LFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCK 124 + G NITP + DP R +KLLL++ +++ L G + +GYT+V L +Y K K Sbjct: 68 VLGMNITPYEKGNI-FNKDPLRPKKLLLHKNQINKLTGELTIKGYTLVPLQVYLKEGKVK 126 Query: 125 VKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAH 159 ++IG+ KGKK DKR I +++ D + KN + Sbjct: 127 MEIGLGKGKKNFDKRDSIAKKDQIRDAQKEFKNKN 161 >UniRef50_A0LGB7 SsrA-binding protein n=7 Tax=Bacteria RepID=SSRP_SYNFM Length = 161 Score = 201 bits (511), Expect = 8e-51, Method: Composition-based stats. Identities = 68/161 (42%), Positives = 96/161 (59%), Gaps = 2/161 (1%) Query: 1 MTKKK-AHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLR 59 MTK K + + I NK+A H+Y I E+FEAG+ L G EVKSLR G+AN+ DSY +R Sbjct: 1 MTKNKPSTAEKTRLICQNKKAYHDYDILEKFEAGIVLLGTEVKSLREGRANLKDSYARVR 60 Query: 60 DGEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK 119 GE FL G +I+P AS + +P R RKLLL+ E+ L G+ G ++ L LY+ Sbjct: 61 KGEVFLQGLHISPYTHAS-YNNHEPERVRKLLLHAHEIKRLTGKTQERGLALIPLKLYFS 119 Query: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 KV++ +A+GKK +DKR IK +E + R+ K + Sbjct: 120 KGKVKVELALAQGKKLYDKRESIKRKEENRELDRLRKRRRQ 160 >UniRef50_B2UY12 SsrA-binding protein n=24 Tax=Bacteria RepID=SSRP_CLOBA Length = 156 Score = 201 bits (511), Expect = 9e-51, Method: Composition-based stats. Identities = 68/154 (44%), Positives = 99/154 (64%), Gaps = 1/154 (0%) Query: 7 HKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLF 66 K S T+A N++ARHEYFIEE EAG+AL G EVKS+R G+AN+ +SY +R+GE F+ Sbjct: 3 RKKSSNTLAENRKARHEYFIEETIEAGIALVGTEVKSIRNGRANLKESYADIRNGEIFIL 62 Query: 67 GANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVK 126 +I+P + +P R +KLLL++ E+ L G V+R+GYT++ L+LY K KV Sbjct: 63 SMHISPYEQGNI-FNVEPLREKKLLLHKSEIHRLAGLVSRDGYTLIPLTLYLKAGKVKVA 121 Query: 127 IGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 +G+ KGKK +DKR + E+ + R +K R Sbjct: 122 LGICKGKKDYDKRDSMLEKAHNREMQRALKERSR 155 >UniRef50_A3ZLQ9 SsrA-binding protein n=2 Tax=Planctomycetaceae RepID=A3ZLQ9_9PLAN Length = 176 Score = 199 bits (507), Expect = 2e-50, Method: Composition-based stats. Identities = 52/148 (35%), Positives = 85/148 (57%) Query: 11 SATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANI 70 I N++ARH+Y I + E G+ L G EVK+LR GK ++ +++ + GE FL I Sbjct: 28 ERPIGENRKARHDYEIIDTLECGIQLVGSEVKTLRDGKVSLGEAFARVLRGEVFLVNCEI 87 Query: 71 TPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVA 130 S + P R RKLLL + E+ + +G ++V L +Y+K KV +G+ Sbjct: 88 PEYRNTSMFLNHVPKRPRKLLLRKSEIVKFAAKSEDKGLSIVPLKMYFKRGLVKVLLGIG 147 Query: 131 KGKKQHDKRSDIKEREWQVDKARIMKNA 158 +G+KQHDKR +K+++ + D AR+M++ Sbjct: 148 RGRKQHDKRDKLKQQDAKRDIARVMRSR 175 >UniRef50_D2RBT7 SsrA-binding protein n=3 Tax=Bacteria RepID=D2RBT7_GARVA Length = 165 Score = 198 bits (504), Expect = 5e-50, Method: Composition-based stats. Identities = 69/160 (43%), Positives = 103/160 (64%), Gaps = 3/160 (1%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLL-R 59 M K A G+ T+A N++A H+Y IE+ +EAGLAL G EVKSLR G+A++++S+V + R Sbjct: 1 MANKPAQ-DGTVTVAQNRKAHHDYVIEDCYEAGLALTGTEVKSLREGRASLAESFVNIDR 59 Query: 60 DGEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK 119 GE +L GANI + T P R RKLLL+ E+ L + +GYTVV L LY+K Sbjct: 60 RGEMWLEGANIPEY-LNGTWNNHAPKRKRKLLLHAAEIAKLSRQTEAKGYTVVPLRLYFK 118 Query: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAH 159 ++ KV+I +A+GKK+ DKR ++E + + + R M+ + Sbjct: 119 GSYVKVEIALARGKKEFDKRQALREEQDKREALREMRYRN 158 >UniRef50_B2S2D1 SsrA-binding protein n=2 Tax=Treponema pallidum RepID=SSRP_TREPS Length = 154 Score = 198 bits (504), Expect = 6e-50, Method: Composition-based stats. Identities = 56/151 (37%), Positives = 86/151 (56%), Gaps = 1/151 (0%) Query: 9 PGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGA 68 G+ IA N++A Y +E+ E G+AL+G EVKS+RAG + D++ +R GE +L Sbjct: 4 TGTHLIAKNRKAFFNYHVEDRLECGIALEGTEVKSVRAGHLSFPDAFAEMRGGELWLKNV 63 Query: 69 NITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIG 128 +I A + +P R RKLL ++ ++ L +V +GYT+V L Y K KV +G Sbjct: 64 HIAEYVHACS-FAPNPDRMRKLLAHRDQIARLKRKVEEKGYTLVPLEFYLKAGRVKVALG 122 Query: 129 VAKGKKQHDKRSDIKEREWQVDKARIMKNAH 159 + KGKK DKR+ IK R+ + +R + H Sbjct: 123 ICKGKKLFDKRAQIKARDNARELSRSLCERH 153 >UniRef50_A5EXZ5 SsrA-binding protein n=4 Tax=Proteobacteria RepID=SSRP_DICNV Length = 159 Score = 197 bits (502), Expect = 9e-50, Method: Composition-based stats. Identities = 76/160 (47%), Positives = 113/160 (70%), Gaps = 3/160 (1%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M+KK I NK+ H+YF+EE FEAG+AL+GWEVK++RAG+ I +SY+L++D Sbjct: 1 MSKKNT---ADNHIVTNKKVFHDYFLEEHFEAGIALEGWEVKAVRAGRIQIKESYILVKD 57 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 + +LFGA I P+A AS+H+ + RTRKLLL++ ++ L G R+GYT++ +SLYWKN Sbjct: 58 QQVYLFGALIHPLASASSHIFPEAQRTRKLLLHRYQIAKLIGASERDGYTLMPVSLYWKN 117 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 + KV + +AKGKK+ DKR K+++W+ ++RIMK R Sbjct: 118 GFVKVDVAIAKGKKEFDKRQVKKDQDWKKTQSRIMKAHKR 157 >UniRef50_C0QVL0 SsrA-binding protein n=2 Tax=Brachyspira RepID=C0QVL0_BRAHW Length = 161 Score = 196 bits (500), Expect = 2e-49, Method: Composition-based stats. Identities = 65/161 (40%), Positives = 92/161 (57%), Gaps = 6/161 (3%) Query: 1 MTKKKAHKPGSATI-----ALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSY 55 M KK K GS TI NK+A Y + E+FEAG+ L G EVKSLR N+SDSY Sbjct: 1 MASKKDKKSGSNTISSGEIVKNKKALFNYELVEKFEAGIVLLGTEVKSLRERSVNMSDSY 60 Query: 56 VLLRDGEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALS 115 + GE F+ +I+P + +P R RKLL+ +REL LYG++ +G T++ + Sbjct: 61 ASFKKGELFIVNMHISPYHFGN-RNNHEPLRERKLLMKKRELRRLYGKIKEQGLTLIPVK 119 Query: 116 LYWKNAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMK 156 LY+ KV++ +AKGKK HDKR +K + + R +K Sbjct: 120 LYFSRGKVKVELALAKGKKLHDKRETLKRKTLDREMERYIK 160 >UniRef50_C1F4B8 SsrA-binding protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F4B8_ACIC5 Length = 176 Score = 196 bits (500), Expect = 2e-49, Method: Composition-based stats. Identities = 67/162 (41%), Positives = 101/162 (62%), Gaps = 4/162 (2%) Query: 2 TKKKAHKP---GSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLL 58 K K P G A N+ A H YF+ E++EAG+AL+G EVKS+R GKAN+ D+Y L+ Sbjct: 15 AKPKPRDPVAAGERDAAQNRAASHNYFLLEKYEAGVALRGTEVKSIREGKANLKDAYGLI 74 Query: 59 RDGEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYW 118 +DGEAFL A+I P + + + + RTRKLLLNQ EL L+G+ ++G+T++ LY+ Sbjct: 75 KDGEAFLLNAHIGPYSHGN-YTNHEALRTRKLLLNQTELKKLWGKTQQKGFTLIPTRLYF 133 Query: 119 KNAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 +N K ++ VAKGK+ DKR ++RE + + + + Sbjct: 134 RNGRVKCELAVAKGKQDWDKRETERKREADREARAAIDRSKK 175 >UniRef50_D1U5X0 SsrA-binding protein n=2 Tax=Desulfovibrio RepID=D1U5X0_9DELT Length = 158 Score = 196 bits (499), Expect = 2e-49, Method: Composition-based stats. Identities = 65/157 (41%), Positives = 91/157 (57%), Gaps = 1/157 (0%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M KKK+ TI NK+AR Y I E FEAG++L G EVKSLR G D YV RD Sbjct: 1 MAKKKSTTT-PDTIGTNKQARRLYDILETFEAGISLLGSEVKSLRGGHVAFKDGYVQFRD 59 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 AFL G +I P + DP R R+LLL++RE+ L + +++G TV+ + +Y+ Sbjct: 60 HSAFLVGVHIAPYEKTGEYDQHDPERPRQLLLHKREILVLKAKSDQKGLTVIPMKMYFSR 119 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157 KV IG+ KGK H ++ D+K+R+ D AR + + Sbjct: 120 GKIKVLIGLGKGKNVHSRKQDLKDRDIARDTARQLAD 156 >UniRef50_Q3ZZ31 SsrA-binding protein n=6 Tax=Bacteria RepID=SSRP_DEHSC Length = 172 Score = 196 bits (498), Expect = 3e-49, Method: Composition-based stats. Identities = 56/153 (36%), Positives = 96/153 (62%), Gaps = 1/153 (0%) Query: 7 HKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLF 66 H T+ N++A H YF+EE++EAG+ L G E+KSLR+G+ N+ D+YV + GE +L Sbjct: 18 HMAEYVTLTTNRKAFHNYFLEEKYEAGIMLLGTEIKSLRSGRVNMGDAYVKPQRGELWLV 77 Query: 67 GANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVK 126 A+I+ S H +P R RKLL++++E+ L +V +G T++ + +Y KN KV+ Sbjct: 78 NAHISAYE-CSGHTSHEPMRERKLLMHRKEIALLMSKVKEKGLTLIPVRIYLKNDIAKVE 136 Query: 127 IGVAKGKKQHDKRSDIKEREWQVDKARIMKNAH 159 + + +GKK +DKR + +R+ + + R +K + Sbjct: 137 LSLGRGKKLYDKRDTVTKRDTERELEREVKYRN 169 >UniRef50_D2R3D1 SsrA-binding protein n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R3D1_9PLAN Length = 179 Score = 195 bits (497), Expect = 4e-49, Method: Composition-based stats. Identities = 54/151 (35%), Positives = 88/151 (58%), Gaps = 2/151 (1%) Query: 9 PGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGA 68 P +A N++AR Y I + E G+ L G EVKSLR GK ++ ++Y ++DG+ +L GA Sbjct: 29 PPVTLVAENRKARFNYEILDSLECGIQLVGSEVKSLRDGKLSLDEAYARIKDGDVWLVGA 88 Query: 69 NITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYW-KNAWCKVKI 127 +I AS P R RKLL++++++ G + +G T+V L +Y+ + KV I Sbjct: 89 DIAEYKQASIW-NHAPKRPRKLLMHKQQMRKFAGTSHDKGLTLVPLKVYFTERGIAKVVI 147 Query: 128 GVAKGKKQHDKRSDIKEREWQVDKARIMKNA 158 G+ +GKK HDKR +K+ + + D +R + Sbjct: 148 GLCRGKKLHDKRETLKKNDAKRDISRAFRKK 178 >UniRef50_A7HGZ0 SsrA-binding protein n=8 Tax=Bacteria RepID=SSRP_ANADF Length = 165 Score = 195 bits (496), Expect = 5e-49, Method: Composition-based stats. Identities = 66/149 (44%), Positives = 92/149 (61%), Gaps = 1/149 (0%) Query: 12 ATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANIT 71 +A N+RAR ++ IE+ +EAGL L G EVKSLR G N+SD+Y L R E FL I Sbjct: 18 KIVATNRRARFDFTIEDSWEAGLVLTGSEVKSLREGNVNLSDAYALPRGDELFLVNCRIG 77 Query: 72 PMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAK 131 A+ H +P R RKLL+N+ ELD + G++ + GYT+V L LY+K W KV++G+AK Sbjct: 78 EYKQAA-HFGHEPLRDRKLLMNRPELDRVKGKIEQRGYTLVPLRLYFKQGWAKVELGLAK 136 Query: 132 GKKQHDKRSDIKEREWQVDKARIMKNAHR 160 G+ D+R I ERE + + R + R Sbjct: 137 GRSHEDRRHAIAERETKREMDREISRRRR 165 >UniRef50_Q7UZP2 SsrA-binding protein n=33 Tax=cellular organisms RepID=SSRP_PROMP Length = 175 Score = 195 bits (496), Expect = 5e-49, Method: Composition-based stats. Identities = 57/143 (39%), Positives = 84/143 (58%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPM 73 ++ N+ A+ +Y I E EAG+ L G EVKS+R G N+ D Y RDGE L +I+P Sbjct: 32 LSENRYAKFQYEILETIEAGIELLGTEVKSIRNGSVNLRDGYCSFRDGEILLLNVHISPH 91 Query: 74 AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGK 133 DP R RKLLL+++E+ L ++G T++ LS+Y K +W K+ IG+ KGK Sbjct: 92 KNVGPFFNHDPLRNRKLLLHKKEIVKLKYNTEKKGLTIIPLSIYLKGSWIKLTIGIGKGK 151 Query: 134 KQHDKRSDIKEREWQVDKARIMK 156 K HDKR K+R+ + + +K Sbjct: 152 KLHDKRQADKQRDIKREIKTALK 174 >UniRef50_A9NF97 SsrA-binding protein n=1 Tax=Acholeplasma laidlawii PG-8A RepID=SSRP_ACHLI Length = 149 Score = 194 bits (495), Expect = 7e-49, Method: Composition-based stats. Identities = 66/149 (44%), Positives = 95/149 (63%), Gaps = 1/149 (0%) Query: 12 ATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANIT 71 I NK+A EYFIE++F AG+ LQG EVKS+RAGK +I+++Y+ R+GE F+ +I Sbjct: 2 KIITQNKKAHFEYFIEQKFVAGIKLQGSEVKSIRAGKCSINEAYITFRNGEVFILNMHIA 61 Query: 72 PMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAK 131 AS+ + TRTRKLLLN+ E+D L G R+G T++ L++ KV I +AK Sbjct: 62 KFD-ASSIFNHEETRTRKLLLNRSEIDKLMGAQTRDGMTIIPLTVELHEGLIKVVIALAK 120 Query: 132 GKKQHDKRSDIKEREWQVDKARIMKNAHR 160 GKK DKR IKER+ + ++ + +K R Sbjct: 121 GKKLFDKRETIKERDIKREQQQSLKGKMR 149 >UniRef50_Q2GCW3 SsrA-binding protein n=2 Tax=Neorickettsia RepID=SSRP_NEOSM Length = 147 Score = 192 bits (490), Expect = 3e-48, Method: Composition-based stats. Identities = 63/143 (44%), Positives = 95/143 (66%), Gaps = 2/143 (1%) Query: 12 ATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANIT 71 IA+NK+AR +Y + +EFEAG+ L G EVK+L+ A++++++V R E +L ++ Sbjct: 2 KVIAINKKARFDYSLIDEFEAGIVLLGTEVKALKYHSASLNEAFVAFRRFELWLNNMHVP 61 Query: 72 PMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK-NAWCKVKIGVA 130 P AS PTR+RKLL+++R+L+ + G V +G T+V LS+Y N KVK +A Sbjct: 62 PYKPAS-RFNHVPTRSRKLLVHKRQLNKISGAVRTKGLTLVPLSIYVNENGLIKVKFALA 120 Query: 131 KGKKQHDKRSDIKEREWQVDKAR 153 KGKK+HDKR DIK+R+W +AR Sbjct: 121 KGKKKHDKRQDIKDRDWARKQAR 143 >UniRef50_Q1GDQ2 SsrA-binding protein n=12 Tax=Rhodobacterales RepID=SSRP_SILST Length = 158 Score = 192 bits (489), Expect = 3e-48, Method: Composition-based stats. Identities = 67/158 (42%), Positives = 98/158 (62%), Gaps = 3/158 (1%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M K+K P IA N+RAR +Y IE++ E G+ L+G EVKSLRAG +NI++SY + + Sbjct: 1 MAKQKTD-PNYKVIAENRRARFDYAIEQDLECGIMLEGSEVKSLRAGGSNIAESYAAVEE 59 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 GE +L + I P A + R RKLL++++E+ L+ R+G T+V L LY+ Sbjct: 60 GELWLVNSYIAPYEQAKV-FKHEERRRRKLLVSRKEMADLWNATQRKGMTLVPLVLYFNH 118 Query: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157 K+KIG+AKGKK HDKR +R+W K R++K+ Sbjct: 119 RGMAKIKIGIAKGKKNHDKREAQAKRDWSRQKQRLLKD 156 >UniRef50_A9G109 SsrA-binding protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=SSRP_SORC5 Length = 162 Score = 192 bits (488), Expect = 4e-48, Method: Composition-based stats. Identities = 71/160 (44%), Positives = 102/160 (63%), Gaps = 3/160 (1%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M K+KA +PG IA NKRA Y + + FEAG+ L+G EVK LRAGKA+++DS+ + Sbjct: 1 MPKEKA-RPGETLIARNKRAGFNYDLGDRFEAGIVLKGSEVKMLRAGKADLTDSFCTVLR 59 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 GE FL G +I MA A+ P RKLLL++RE++ + + REG T VA LY+K+ Sbjct: 60 GEVFLHGVSIAAMASAA--FGHVPKGARKLLLHRREIERIDLSIAREGMTAVATRLYFKS 117 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 KV+I +A+GKK HDKR IKE++ + + ++ + R Sbjct: 118 GLAKVEIALARGKKSHDKRETIKEQDAEREMRAVVVHGQR 157 >UniRef50_Q04E23 SsrA-binding protein n=4 Tax=Lactobacillales RepID=SSRP_OENOB Length = 155 Score = 191 bits (487), Expect = 6e-48, Method: Composition-based stats. Identities = 66/159 (41%), Positives = 97/159 (61%), Gaps = 4/159 (2%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M KK H +A N+RA YFI E +EAG+ L G E+KS+R G+ I D+Y+ +RD Sbjct: 1 MAKKDKH---DDALARNRRASFNYFIGETYEAGIQLTGTEIKSVRLGQITIGDAYITVRD 57 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 +AFL ANI+P + DP R RKLLL+++E+ +L V++EG T+V L +Y Sbjct: 58 QQAFLNNANISPYKQGN-QFNVDPLRRRKLLLHKKEILALDRAVSKEGKTIVPLRVYIVK 116 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAH 159 + K+ I + GKK +DKR IKER+ + + + +KN H Sbjct: 117 GFAKILIAIGTGKKNYDKRQTIKERDLKRELGKNLKNFH 155 >UniRef50_Q7UH38 SsrA-binding protein n=1 Tax=Rhodopirellula baltica RepID=SSRP_RHOBA Length = 176 Score = 191 bits (487), Expect = 6e-48, Method: Composition-based stats. Identities = 54/153 (35%), Positives = 86/153 (56%), Gaps = 2/153 (1%) Query: 7 HKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLF 66 ++P +A N++A+ Y I + E G+ L G EVKS+R GK ++ ++++ + +GE +L Sbjct: 25 NQPNITPVAENRKAKFRYEILDSVECGMMLMGSEVKSMREGKLSLDEAHIRVTNGELWLV 84 Query: 67 GANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYW-KNAWCKV 125 G++I A DP R RKLL++ +E D GR G T++ L +Y+ + K Sbjct: 85 GSDIAHYNNAGMW-NHDPRRPRKLLVHAKEFDKFAGRAFERGLTLIPLRVYFSERGLAKC 143 Query: 126 KIGVAKGKKQHDKRSDIKEREWQVDKARIMKNA 158 +G+ KGKK HDKR IK+RE R M+ Sbjct: 144 VMGLVKGKKLHDKRETIKKRESDRGLQRAMRRK 176 >UniRef50_A6G542 SsrA-binding protein n=2 Tax=Proteobacteria RepID=A6G542_9DELT Length = 159 Score = 191 bits (486), Expect = 6e-48, Method: Composition-based stats. Identities = 62/148 (41%), Positives = 91/148 (61%), Gaps = 1/148 (0%) Query: 10 GSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGAN 69 G + N++A H+Y I EE E+G+ALQG EVKS+R G+ ++ ++Y R E FL A+ Sbjct: 11 GDEVLEENRKATHDYEILEELESGVALQGSEVKSIRDGRISLKEAYCQFRGDELFLLQAH 70 Query: 70 ITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGV 129 I A P R RKLLL++RELD L+ V +G T+V L +Y K+ K+ IG+ Sbjct: 71 IAEFPQAHAR-NHPPLRARKLLLHRRELDKLHDAVKTQGLTIVPLVVYLKSRRIKILIGL 129 Query: 130 AKGKKQHDKRSDIKEREWQVDKARIMKN 157 +GKK HDKR+ IKER+ + + R ++ Sbjct: 130 GRGKKVHDKRAAIKERDQKREMQRALRE 157 >UniRef50_Q1MRU5 SsrA-binding protein n=5 Tax=Desulfovibrionales RepID=SSRP_LAWIP Length = 155 Score = 191 bits (486), Expect = 6e-48, Method: Composition-based stats. Identities = 63/154 (40%), Positives = 97/154 (62%), Gaps = 1/154 (0%) Query: 6 AHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFL 65 + K S + N++ARH Y + + EAG+ L G EVKSLR+G A+ DSYV + GE ++ Sbjct: 2 SAKKNSHLVFENRKARHLYDLLDFLEAGIVLTGPEVKSLRSGHASFQDSYVDFKQGEGYI 61 Query: 66 FGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKV 125 G +I P A +V+ +P R RKLLL+++EL L +V ++G T+V L LY+KN K Sbjct: 62 VGLHIPPYNNAG-YVIQNPDRPRKLLLHRQELKMLASKVEQKGLTIVPLKLYFKNRKVKT 120 Query: 126 KIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAH 159 +I +AKG+K +D R+++K+R +D R + H Sbjct: 121 EIALAKGRKLYDHRNELKKRAEAMDIKRELAARH 154 >UniRef50_C1ZDG5 SsrA-binding protein n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1ZDG5_PLALI Length = 160 Score = 190 bits (483), Expect = 2e-47, Method: Composition-based stats. Identities = 58/155 (37%), Positives = 98/155 (63%), Gaps = 1/155 (0%) Query: 2 TKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDG 61 +K + KP + ++ N+RARHEY + ++ + G+ L G EVKS+RAGK +I +++V ++DG Sbjct: 5 SKPEDDKPNNISVCRNRRARHEYELMDQLDCGIVLMGSEVKSIRAGKVSIEEAWVRVQDG 64 Query: 62 EAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNA 121 E +L G +I AS + + RTRKLL ++REL GR + T+V L +Y + Sbjct: 65 ELYLVGCDINEYPQAS-WLNHETKRTRKLLAHRRELKKFCGRTSERSITIVPLEMYLQRG 123 Query: 122 WCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMK 156 + K+KI +AKG+K HDKR +K ++ + + ++ + Sbjct: 124 FVKIKIALAKGRKLHDKREKLKAQDARREIRQVTR 158 >UniRef50_D2PSC9 SsrA-binding protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PSC9_9ACTO Length = 173 Score = 189 bits (482), Expect = 2e-47, Method: Composition-based stats. Identities = 55/155 (35%), Positives = 88/155 (56%), Gaps = 1/155 (0%) Query: 6 AHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFL 65 IA N++A H+Y + E +EAG+ LQG EVK+LRAG+A++ + + + E +L Sbjct: 16 KKPEADPVIARNRKAAHDYHLGESWEAGMVLQGAEVKALRAGRASLVGGFATVEEREIWL 75 Query: 66 FGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKV 125 G +I + A R RKLLL++ ++D + +VN G T+V + LY+K+ KV Sbjct: 76 HGVHIPQYSQAR-WFNDGSRRKRKLLLHRAQIDKIERKVNESGLTIVPVLLYFKDGRAKV 134 Query: 126 KIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 +I +A+GKK DKR + ERE + R + + Sbjct: 135 EIALARGKKTWDKRHALAEREATREAERAVSRRLK 169 >UniRef50_Q1IQ53 SsrA-binding protein n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=SSRP_ACIBL Length = 175 Score = 189 bits (482), Expect = 2e-47, Method: Composition-based stats. Identities = 57/159 (35%), Positives = 95/159 (59%), Gaps = 1/159 (0%) Query: 2 TKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDG 61 K+ G ++N+ A H YF+ +++EAG+AL+G EVKS+R G+AN+ D+Y L+++ Sbjct: 17 AKRDPVASGERDASVNRAASHNYFLLDKYEAGVALRGTEVKSIRDGRANLKDAYGLVKEN 76 Query: 62 EAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNA 121 E +L A+I P AS + P RTRKLL+ +RE+ L ++G+T++ +Y+KN Sbjct: 77 ELWLINAHIGPYDAAS-YNNHAPLRTRKLLVKKREILKLLAASQQKGHTLIPTRMYFKNG 135 Query: 122 WCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 KV++ VAKGK+ DKR + + D + + + Sbjct: 136 RVKVELAVAKGKQLWDKRETDRRKTADRDAREAIARSRK 174 >UniRef50_B2KCF8 SsrA-binding protein n=1 Tax=Elusimicrobium minutum Pei191 RepID=SSRP_ELUMP Length = 157 Score = 189 bits (481), Expect = 3e-47, Method: Composition-based stats. Identities = 57/160 (35%), Positives = 95/160 (59%), Gaps = 4/160 (2%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M KK G A N++A H Y I + +EAG+ L G EVKS+R + ++ ++V + Sbjct: 1 MAKKDN---GPLVAATNRKAYHNYHILDTYEAGIELLGSEVKSIRKKEVSLDGAFVRIEG 57 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 +A++F +I P +T +P R R+LLLN++E++ L G +G+T++ L +Y+KN Sbjct: 58 MQAYVFNMHINPYKY-NTVTEVEPLRQRRLLLNKKEINKLKGHAEIKGHTIIPLEVYFKN 116 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 W K+K+G+ KGK+ DKR IK+R+ + + KN + Sbjct: 117 GWAKIKVGLGKGKQLFDKRDAIKKRDLSREMEKDFKNKIK 156 >UniRef50_Q9Z8K1 SsrA-binding protein n=2 Tax=Chlamydophila pneumoniae RepID=SSRP_CHLPN Length = 151 Score = 188 bits (479), Expect = 5e-47, Method: Composition-based stats. Identities = 55/146 (37%), Positives = 86/146 (58%), Gaps = 1/146 (0%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPM 73 I N++A Y + E EAG+ L G E+KSLR N+ D+YV++ GE +L A+I P Sbjct: 6 IVSNRKALRNYEVIETLEAGIVLTGTEIKSLRDHGGNLGDAYVIVSKGEGWLLNASIAPY 65 Query: 74 AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGK 133 + + + R RKLLL++ EL L G++ ++G T++ L ++ + KV++G +GK Sbjct: 66 RFGNIY-NHEERRKRKLLLHRYELRKLEGKIAQKGMTLIPLGMFLSRGYVKVRLGCCRGK 124 Query: 134 KQHDKRSDIKEREWQVDKARIMKNAH 159 K +DKR I ERE + + A MK H Sbjct: 125 KAYDKRRTIIEREKEREVAAAMKRRH 150 >UniRef50_Q254F5 SsrA-binding protein n=1 Tax=Chlamydophila felis Fe/C-56 RepID=SSRP_CHLFF Length = 150 Score = 188 bits (479), Expect = 5e-47, Method: Composition-based stats. Identities = 52/149 (34%), Positives = 84/149 (56%), Gaps = 1/149 (0%) Query: 10 GSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGAN 69 S I N++A Y + + +AG+ L G E+KSLR N+ D+YV + GEA+L A+ Sbjct: 2 SSKEIVSNRKALRNYEVLDTVDAGVVLTGTEIKSLRDHGGNLGDAYVTISKGEAWLLNAS 61 Query: 70 ITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGV 129 I P + + + R RKLLL++ E+ L +V+++G T++ L ++ + K+++G Sbjct: 62 IAPYRFGNIY-NHEERRKRKLLLHRYEIQKLESKVSQKGITIIPLGMFLSRGYVKIRLGC 120 Query: 130 AKGKKQHDKRSDIKEREWQVDKARIMKNA 158 +GKK HDKR I RE Q + MK Sbjct: 121 CRGKKAHDKRQTIIAREKQREVESAMKRY 149 >UniRef50_B2ULK9 SsrA-binding protein n=3 Tax=Verrucomicrobia RepID=B2ULK9_AKKM8 Length = 152 Score = 188 bits (478), Expect = 6e-47, Method: Composition-based stats. Identities = 59/150 (39%), Positives = 93/150 (62%) Query: 11 SATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANI 70 S+ I+ NK+AR +Y I + +E G+ L+G EVKS+RAGK NI+DS+ + +G+ L+G +I Sbjct: 2 SSDISTNKKARRDYEILDTYECGMELKGTEVKSIRAGKVNIADSFARVENGQMLLYGCDI 61 Query: 71 TPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVA 130 P A R R+LLL++RE+ L + +++G ++VAL LYWKN K+ +G+ Sbjct: 62 QPWETAGEFFQHQARRPRRLLLHKREIFKLEQQTSQKGCSLVALKLYWKNGKVKLALGLG 121 Query: 131 KGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 KGK D+R D+K R + R + +R Sbjct: 122 KGKTHRDQRYDLKARVEMREAQREVARINR 151 >UniRef50_Q2S237 SsrA-binding protein n=1 Tax=Salinibacter ruber DSM 13855 RepID=SSRP_SALRD Length = 154 Score = 188 bits (478), Expect = 6e-47, Method: Composition-based stats. Identities = 62/136 (45%), Positives = 89/136 (65%), Gaps = 2/136 (1%) Query: 9 PGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLL-RDGEAFLFG 67 G+ +A NK+A+ EY IEE EAGL L+G EVKS+R GKA++ +Y + R+GE + G Sbjct: 3 EGTEVVARNKKAQFEYDIEETLEAGLVLEGSEVKSVRQGKASLDGAYCQVDREGEMKIHG 62 Query: 68 ANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKI 127 I P A +P R RKLLL+ +++ +EGYT+V LSLY+++ W K+KI Sbjct: 63 MYIKPYEEAGP-FGHEPRRNRKLLLHDQQIGKWGQMAEQEGYTIVPLSLYFRDGWAKLKI 121 Query: 128 GVAKGKKQHDKRSDIK 143 G+AKG+++HDKR IK Sbjct: 122 GIAKGRQKHDKRQAIK 137 >UniRef50_A5FZS6 SsrA-binding protein n=11 Tax=Alphaproteobacteria RepID=SSRP_ACICJ Length = 159 Score = 187 bits (477), Expect = 8e-47, Method: Composition-based stats. Identities = 66/160 (41%), Positives = 97/160 (60%), Gaps = 3/160 (1%) Query: 1 MTKKKAHKPGSATIA-LNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLR 59 M + + S IA N++AR Y I++ EAG+ L+G EVKSLR G+A +S+++ R Sbjct: 1 MAEPRKSGLISHGIAAQNRKARFNYTIKDTVEAGIVLRGAEVKSLRMGRATLSEAFAGER 60 Query: 60 DGEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK 119 DGE +LF I D RKLLL ++++D L G + R+G TVV L +++ Sbjct: 61 DGEMYLFNMYIPEY-QGGVLSRFDTKGPRKLLLKRKQIDQLLGAIARQGSTVVPLDVHFN 119 Query: 120 -NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNA 158 KV +G+A+G+KQHDKR I +R+W+ DKARI+KN Sbjct: 120 PRGLAKVTLGIAEGRKQHDKRQAIAKRDWERDKARILKNR 159 >UniRef50_D1NAK5 SsrA-binding protein n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NAK5_9BACT Length = 153 Score = 185 bits (472), Expect = 3e-46, Method: Composition-based stats. Identities = 49/153 (32%), Positives = 78/153 (50%), Gaps = 1/153 (0%) Query: 4 KKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEA 63 P +A NK+A H Y I E FEAG+ L G EVKS R +++ YV + +G+A Sbjct: 1 MPRQTPADPVLATNKKAFHNYHIIERFEAGVELVGTEVKSCRDRAIVMNEGYVTINNGQA 60 Query: 64 FLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWC 123 +L +I + T+ R+LLL+ E+ L + ++G T+V L Y K Sbjct: 61 WLLNVHIAVYGFGN-RFNHVATQKRRLLLHHNEILKLAQWLGQKGGTIVPLKFYLKKGLV 119 Query: 124 KVKIGVAKGKKQHDKRSDIKEREWQVDKARIMK 156 KV+I +GK D+R ++ R+ ++ R +K Sbjct: 120 KVEIAYCQGKTHGDQRETLRRRQSDLEMRRAVK 152 >UniRef50_C7JH78 Trans-translation helper factor SmpB n=8 Tax=Acetobacter pasteurianus RepID=C7JH78_ACEP3 Length = 168 Score = 185 bits (472), Expect = 3e-46, Method: Composition-based stats. Identities = 58/152 (38%), Positives = 90/152 (59%), Gaps = 2/152 (1%) Query: 10 GSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGAN 69 +A N++AR Y I E EAGL L+G EVKSLR G+A I++++ RDG +LF + Sbjct: 15 SHGMVAQNRKARFNYNILETIEAGLVLKGAEVKSLRLGRATINEAFAGERDGALWLFNSY 74 Query: 70 ITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK-NAWCKVKIG 128 I D RKLL++++E+ G + ++G T+V L++++ KV +G Sbjct: 75 IPEY-QGGVLSRFDTRAPRKLLMHRKEMRKFIGAIAKQGATLVPLNVHFNDRGLAKVTLG 133 Query: 129 VAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 + GKK HDKR I +R+WQ DKAR+++N + Sbjct: 134 LGVGKKSHDKRQSIADRDWQRDKARLIRNKGK 165 >UniRef50_C9LGK2 SsrA-binding protein n=8 Tax=Prevotella RepID=C9LGK2_9BACT Length = 159 Score = 184 bits (469), Expect = 6e-46, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 89/157 (56%), Gaps = 3/157 (1%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M K KP I NKRA H+YF+ + AG+ L G E+KS+R GKA + D++ + + Sbjct: 1 MAKNNKLKPARINI-KNKRAEHDYFVIDRLTAGIVLTGTEIKSIRLGKAGLVDTFCFINN 59 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYW-K 119 GE ++ + + S + + R RKLLLN++E+ G T+V L LY + Sbjct: 60 GEMWVKNMYVAEYSFGS-YNRHELRRDRKLLLNKKEIRHWASETKSPGLTIVPLRLYIDE 118 Query: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMK 156 N K+ IG+ +GKK++DKR+ IKE+E + + R+ K Sbjct: 119 NGRAKLDIGLCRGKKEYDKRATIKEKESRREIERVTK 155 >UniRef50_C2D8P0 TmRNA-binding protein n=2 Tax=Coriobacteriaceae RepID=C2D8P0_9ACTN Length = 172 Score = 184 bits (469), Expect = 6e-46, Method: Composition-based stats. Identities = 52/159 (32%), Positives = 89/159 (55%), Gaps = 2/159 (1%) Query: 3 KKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGE 62 K + IA N+ A H+Y ++ EAG+ L G EVKSLR ++D + ++R+ E Sbjct: 11 KGARKQATFHLIAKNRSAYHDYDLDNAEEAGIELTGVEVKSLRERSCQLTDCFCIVRNNE 70 Query: 63 AFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK-NA 121 +L G +I P + DP R R+LL++++++ S+ RV +G ++V L +Y+ Sbjct: 71 LYLVGLHIHPYSHGGVW-NIDPDRRRRLLMHKKQILSIARRVQTKGVSLVPLEIYFNERN 129 Query: 122 WCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 KVK+ V +GKK +DKR+ +R+ + R++K R Sbjct: 130 RVKVKVAVGRGKKMYDKRAAAAKRDSDREIQRVLKARTR 168 >UniRef50_A9BF44 SsrA-binding protein n=3 Tax=Bacteria RepID=SSRP_PETMO Length = 150 Score = 184 bits (469), Expect = 7e-46, Method: Composition-based stats. Identities = 64/146 (43%), Positives = 92/146 (63%), Gaps = 2/146 (1%) Query: 12 ATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANIT 71 T+A NK+A H+Y I E FEAG++L G EVKS +AGK N DS+ + GE L+ +I+ Sbjct: 2 TTLARNKKATHDYEIIETFEAGISLLGTEVKSSKAGKINFKDSFCKIEKGELILYNVHIS 61 Query: 72 PMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN-AWCKVKIGVA 130 P + AS DP R RKLLL+++E+ L +V +EG T++ L +Y N KVKI +A Sbjct: 62 PYSGASI-FNHDPERPRKLLLHKKEIRRLQSKVQQEGLTMIPLEIYTNNKGLIKVKIALA 120 Query: 131 KGKKQHDKRSDIKEREWQVDKARIMK 156 KG K++DKR I E+E++ + K Sbjct: 121 KGLKKYDKREKIAEKEYERRIRKQQK 146 >UniRef50_C6HYH8 SsrA-binding protein n=1 Tax=Leptospirillum ferrodiazotrophum RepID=C6HYH8_9BACT Length = 170 Score = 184 bits (467), Expect = 1e-45, Method: Composition-based stats. Identities = 56/165 (33%), Positives = 90/165 (54%), Gaps = 6/165 (3%) Query: 1 MTKKKAHK----PGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYV 56 M KK + + ++ N++A Y + E FEAG+ L G EVK++R G N+ D++V Sbjct: 1 MAGKKKDEREADEKARAVSTNRKALFRYEVIERFEAGIVLWGTEVKAIREGSVNLGDAFV 60 Query: 57 LLRDGEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSL 116 E++L+ ++ P DP R RKLLL+++E+ L+G ++G TVV L + Sbjct: 61 RFEKEESWLYQMHVGPYR-GGNRENHDPLRVRKLLLHRKEILRLFGLTLQKGLTVVPLGI 119 Query: 117 YWKNA-WCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 Y N KV + + KGK Q DKR IK RE + +R+ ++ + Sbjct: 120 YSNNRKKFKVTLALVKGKTQGDKREAIKRREADREISRVFRSNQK 164 >UniRef50_A6DIW5 SsrA-binding protein n=2 Tax=Bacteria RepID=A6DIW5_9BACT Length = 147 Score = 183 bits (466), Expect = 1e-45, Method: Composition-based stats. Identities = 55/145 (37%), Positives = 88/145 (60%), Gaps = 2/145 (1%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPM 73 IA N++AR Y I E++EAG+ LQG EVKS R +I++++V GEA++ ++I+P Sbjct: 3 IATNRKARFNYEIIEKYEAGVELQGTEVKSCRNKSISIAEAFVAFESGEAWMRESHISPY 62 Query: 74 AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGK 133 + +P R R+LLL++RE+ L V ++G +V+ LS++ K K+ IG+ +GK Sbjct: 63 EQGN-RNNHEPKRKRRLLLHKREIRKLMREVEQKGLSVIPLSVHLKRGKIKISIGLCRGK 121 Query: 134 KQHDKRSDIKEREWQVDKARIMKNA 158 DKR IK+R+ R +KN Sbjct: 122 NTVDKRDSIKKRDNDRALQR-LKNK 145 >UniRef50_Q6MAG8 SsrA-binding protein n=4 Tax=Chlamydiales RepID=SSRP_PARUW Length = 153 Score = 183 bits (465), Expect = 2e-45, Method: Composition-based stats. Identities = 56/142 (39%), Positives = 84/142 (59%), Gaps = 1/142 (0%) Query: 8 KPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFG 67 K + + N+RA H+Y I E FE G+ LQG E+KS+R A + D+YV + E +L G Sbjct: 2 KDKHSDLVSNRRATHDYEILETFETGIVLQGTEIKSIRDHGATLQDAYVKVIHNELWLIG 61 Query: 68 ANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKI 127 NI + H + R RKLL+++RE+ G + +G ++ L+LY K KV+I Sbjct: 62 CNIAHYRFGNIH-NHEEKRDRKLLMHKREIKKCKGAIQEKGLALIPLALYLKQGRIKVRI 120 Query: 128 GVAKGKKQHDKRSDIKEREWQV 149 +AKGKK DKR+D+KER+ + Sbjct: 121 AIAKGKKSFDKRADLKERDDKR 142 >UniRef50_A0FD64 TmRNA-binding protein n=1 Tax=Coxiella endosymbiont of Amblyomma americanum RepID=A0FD64_9COXI Length = 154 Score = 182 bits (464), Expect = 2e-45, Method: Composition-based stats. Identities = 62/149 (41%), Positives = 92/149 (61%) Query: 7 HKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLF 66 + I LNK+ H+Y+IE+ EAGL L+ WE+KS+RAG + +SYV+ + EA+L Sbjct: 2 KQSALRIIVLNKKTFHDYYIEQRLEAGLVLESWEIKSIRAGHIQLRNSYVIFKSREAWLI 61 Query: 67 GANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVK 126 G + +P + + HV DP R+RKLLLN+ E+D L V ++ TVV L L+W K + Sbjct: 62 GVHCSPPSNIAYHVKPDPKRSRKLLLNKHEIDRLLSTVQKKRLTVVPLDLHWYKNHVKTE 121 Query: 127 IGVAKGKKQHDKRSDIKEREWQVDKARIM 155 + + +GK+ HDKR IK REW+ K + Sbjct: 122 VALVRGKRMHDKRETIKRREWERKKHETL 150 >UniRef50_B3DV24 TmRNA-binding protein n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DV24_METI4 Length = 152 Score = 182 bits (464), Expect = 3e-45, Method: Composition-based stats. Identities = 60/148 (40%), Positives = 98/148 (66%) Query: 11 SATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANI 70 + +N+RAR +Y I + EAG+ L G EVKSL+AGK ++ ++ + +GEAFL+ NI Sbjct: 2 ERDLVVNRRARKDYQILKTLEAGIVLLGSEVKSLKAGKGSLEGAFARVENGEAFLYQMNI 61 Query: 71 TPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVA 130 +P A+++ + DP RKLLL+++E+ L G ++R+G T+V L LY++ KV +G+A Sbjct: 62 SPYEKAASYALRDPKAPRKLLLHKKEIGELAGAISRQGRTIVPLKLYFRRGKIKVLLGIA 121 Query: 131 KGKKQHDKRSDIKEREWQVDKARIMKNA 158 G+ + DKR IKE+E Q + +R++K Sbjct: 122 SGRSKVDKREKIKEQETQREISRVLKRR 149 >UniRef50_B9XT05 SsrA-binding protein n=1 Tax=bacterium Ellin514 RepID=B9XT05_9BACT Length = 151 Score = 182 bits (464), Expect = 3e-45, Method: Composition-based stats. Identities = 58/143 (40%), Positives = 84/143 (58%), Gaps = 1/143 (0%) Query: 12 ATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANIT 71 A I N +AR +Y I E FEAG+AL+G EVKSLRAG I+D++ + + + FL+ +I Sbjct: 2 ADILSNHKARRDYHILETFEAGIALKGTEVKSLRAGLGQIADAFARVENDQVFLYNVHID 61 Query: 72 PMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAK 131 + +P RKLLL++ E+ L+G + +G + LS YWKN KV + V K Sbjct: 62 EYRFGNRQ-NHEPKSARKLLLHKSEIRKLFGLASVKGNALFPLSFYWKNGKVKVALAVGK 120 Query: 132 GKKQHDKRSDIKEREWQVDKARI 154 GK + DKR DIK+R+ + R Sbjct: 121 GKVEFDKRDDIKKRDADRELKRA 143 >UniRef50_A6L927 SsrA-binding protein n=17 Tax=Bacteria RepID=SSRP_PARD8 Length = 153 Score = 182 bits (462), Expect = 4e-45, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 83/152 (54%), Gaps = 2/152 (1%) Query: 6 AHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFL 65 K + NKRA +Y + + F AG+ L G E+KS+R GKA++ D++ ++ GE ++ Sbjct: 2 KEKISNNIQIKNKRATFDYELLDTFTAGIVLTGTEIKSIRLGKASLVDTFCIVEKGELWV 61 Query: 66 FGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK-NAWCK 124 I T+ + R RKLLL ++EL + G V G+T+V L+ K Sbjct: 62 KNMYIAEY-FYGTYNNHNARRDRKLLLTKKELRKIEGAVRASGFTIVPTRLFINEKGLAK 120 Query: 125 VKIGVAKGKKQHDKRSDIKEREWQVDKARIMK 156 V + +A+GKK++DKR I+ER+ + + R K Sbjct: 121 VVVAIARGKKEYDKRDSIRERDDRREMDRAFK 152 >UniRef50_Q83N13 SsrA-binding protein n=2 Tax=Tropheryma whipplei RepID=SSRP_TROWT Length = 211 Score = 181 bits (461), Expect = 5e-45, Method: Composition-based stats. Identities = 56/157 (35%), Positives = 86/157 (54%), Gaps = 1/157 (0%) Query: 4 KKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEA 63 + K IA NK A + YF+++ FEAGL L G EVKS+R K ++S++Y+ + E Sbjct: 17 PERSKIPDCVIASNKSAEYNYFLDKTFEAGLVLLGSEVKSVRQQKISLSEAYIYEDNSEI 76 Query: 64 FLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWC 123 +L I +P R RKLLL++ ++ L + G T+V + Y++N Sbjct: 77 WLANLYIPEHKTGG-WTNHNPRRLRKLLLHKYQIARLRKDLLIPGITLVPIKFYFRNGRA 135 Query: 124 KVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 K+ I +A+GKK DKR IKERE ++ R +K+ R Sbjct: 136 KLLIALARGKKLIDKREVIKEREATLEANRALKHRLR 172 >UniRef50_B2GAM5 SsrA-binding protein n=4 Tax=Bacteria RepID=SSRP_LACF3 Length = 157 Score = 181 bits (461), Expect = 5e-45, Method: Composition-based stats. Identities = 64/158 (40%), Positives = 94/158 (59%), Gaps = 1/158 (0%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M KK + IA NK+ARH+Y + + FEAGL L G E+KS+RA + + D Y + Sbjct: 1 MAKKNHQGLDANLIAQNKKARHDYTVTDTFEAGLVLTGTEIKSVRARRVTLKDGYAQFHN 60 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 GE +L +I A DP R RKLLL+++EL L G + +G T+V L +Y K+ Sbjct: 61 GELWLMNVHIAEFA-GGNIFNHDPLRNRKLLLHKKELKKLQGELTAKGVTLVPLKMYLKH 119 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNA 158 + KV +G+A+GK ++DKR+ IK+RE R+MK+ Sbjct: 120 GYAKVLLGLAQGKHEYDKRNAIKKREQDRQIDRVMKHY 157 >UniRef50_Q04TV5 SsrA-binding protein n=6 Tax=Leptospira RepID=SSRP_LEPBJ Length = 160 Score = 181 bits (461), Expect = 5e-45, Method: Composition-based stats. Identities = 60/158 (37%), Positives = 98/158 (62%), Gaps = 3/158 (1%) Query: 4 KKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEA 63 K +PG + + NK+A+ + + EAG+ L G EVKSLR K N++D++ +++GE Sbjct: 3 NKKEEPGHSPLV-NKKAKFNFELVSFIEAGIVLSGSEVKSLREKKGNLTDAFAKIKNGEV 61 Query: 64 FLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNA-W 122 FL +ITP +V R RKLLL+++E++ L +V +G +VA +Y+KN Sbjct: 62 FLENFSITPYKNGG-YVNHPEIRPRKLLLHKKEIEKLERQVKEKGLVLVATKVYFKNNLR 120 Query: 123 CKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 KV+I V K KK HDKR D+++++ Q + AR +K+++R Sbjct: 121 VKVEIAVGKPKKIHDKRDDMQKKDAQQEIARALKSSNR 158 >UniRef50_D1VZH7 SsrA-binding protein n=1 Tax=Prevotella timonensis CRIS 5C-B1 RepID=D1VZH7_9BACT Length = 160 Score = 180 bits (459), Expect = 1e-44, Method: Composition-based stats. Identities = 58/160 (36%), Positives = 92/160 (57%), Gaps = 3/160 (1%) Query: 1 MTK-KKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLR 59 M K ++A + S NKRA EYF + + AG+ L G E+KS+R GKA++ D++ + Sbjct: 2 MNKDEQALRKKSPIQIKNKRASFEYFFIDTYTAGIVLTGTEIKSIRLGKASLVDAFCYIN 61 Query: 60 DGEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYW- 118 +GE ++ G NI+P + + R RKLLL +RE+ L G T++ + L+ Sbjct: 62 NGEIWVKGMNISPY-FYGSFSNHEARRDRKLLLTKREIRRLEIDAKNPGNTILPVLLFID 120 Query: 119 KNAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNA 158 + KV I +AKGKK++DKR +KE+E Q + R +K+ Sbjct: 121 QKGRAKVDIVLAKGKKEYDKRQSLKEKEDQREMDRALKHY 160 >UniRef50_C0JZT0 SsrA-binding protein n=1 Tax=uncultured bacterium URE12 RepID=C0JZT0_9BACT Length = 163 Score = 180 bits (459), Expect = 1e-44, Method: Composition-based stats. Identities = 65/160 (40%), Positives = 92/160 (57%), Gaps = 2/160 (1%) Query: 2 TKKKAHK-PGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 KK K IA N++ARH+Y IE+ EAGLAL+G EVKSLR I+ ++ + Sbjct: 4 AKKSDEKDKNFEQIATNRKARHDYLIEDTIEAGLALEGPEVKSLRLKHCVITSAFARVEP 63 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 +L+G I+P A +T DP RTRKLLL + E+ L V +G +VAL +Y+K Sbjct: 64 RGVYLYGMQISPYAF-NTLTQLDPVRTRKLLLKKTEIRRLSRAVEIKGMALVALEVYFKR 122 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 W KV IG+ +GKK DK+ IK+R+ + R K ++ Sbjct: 123 GWAKVLIGLGRGKKAADKKETIKKRDIDREMRRDFKEKYK 162 >UniRef50_Q6MQ46 SsrA-binding protein n=1 Tax=Bdellovibrio bacteriovorus RepID=SSRP_BDEBA Length = 152 Score = 180 bits (458), Expect = 1e-44, Method: Composition-based stats. Identities = 58/150 (38%), Positives = 87/150 (58%), Gaps = 1/150 (0%) Query: 9 PGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGA 68 + NK+AR +Y I E +EAGL L G EVKSLR + DSY+ + EA+L A Sbjct: 3 ENILIVHENKKARFDYTIVETYEAGLQLMGSEVKSLRNKDVQLKDSYISFKGDEAYLQNA 62 Query: 69 NITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIG 128 +I AS++ P R RKLL+++ ELD ++ + +GY+ V L +Y+KN K++I Sbjct: 63 HIAEYK-ASSYNNHVPERHRKLLMHRNELDEIFEALREKGYSCVPLKIYFKNGRAKLQIA 121 Query: 129 VAKGKKQHDKRSDIKEREWQVDKARIMKNA 158 + KGKK HDKR IK+R+ ++ + Sbjct: 122 LVKGKKTHDKREAIKKRDVSDQIRSSLRRS 151 >UniRef50_C9RKN3 SsrA-binding protein n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RKN3_FIBSS Length = 156 Score = 179 bits (456), Expect = 2e-44, Method: Composition-based stats. Identities = 57/156 (36%), Positives = 90/156 (57%), Gaps = 4/156 (2%) Query: 7 HKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLR--DGEAF 64 K S + N++A H YF++E FE G+ L G EVKS+R GK + ++++ + E + Sbjct: 3 KKESSTPVIQNRKANHLYFVDETFEVGIMLIGSEVKSIRNGKCTLGEAWIDIDENKDELW 62 Query: 65 LFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCK 124 L GA+I A+ P R RKLL + E+ + +G T++ L +Y+KN K Sbjct: 63 LVGAHIDEYLFAN-RFNHFPARRRKLLAHTHEIQKMRKAKELKGCTIIPLKMYFKNRIAK 121 Query: 125 VKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 +++G+ +GK QHDKR DI R+ +++ AR K AHR Sbjct: 122 LEVGICRGKDQHDKRQDILVRDAKMEMARAAK-AHR 156 >UniRef50_Q02A69 SsrA-binding protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=SSRP_SOLUE Length = 156 Score = 179 bits (455), Expect = 3e-44, Method: Composition-based stats. Identities = 54/158 (34%), Positives = 82/158 (51%), Gaps = 3/158 (1%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M KK ++ N++A H YF+ E FE G+ L G EVK+ + K + D+Y + Sbjct: 1 MADKKDF--AFKILSDNRQAGHNYFLSERFECGMVLTGTEVKAAKDAKIQLKDAYASVLG 58 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 EA+L A+I+ + + P R RKLLL++RE+D L +G ++ +Y KN Sbjct: 59 DEAWLLNAHISQYSHGNRE-NHLPVRNRKLLLHRREIDKLQEITREKGLALIPTKIYMKN 117 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNA 158 K +I VAKGKK +DKR+ K R + M+ Sbjct: 118 GKIKCEIAVAKGKKLYDKRAADKARTADDEARAEMRRR 155 >UniRef50_B8D947 SsrA-binding protein n=4 Tax=Buchnera aphidicola RepID=SSRP_BUCA5 Length = 162 Score = 179 bits (454), Expect = 4e-44, Method: Composition-based stats. Identities = 73/157 (46%), Positives = 113/157 (71%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M +KK ++ S+ I +NK+A + YFIE+ F++GL L+GWE+KS+R+GK NIS+SY++ Sbjct: 1 MLQKKKYQKKSSKIIINKKAYYNYFIEKVFQSGLVLEGWEIKSIRSGKVNISESYIINDR 60 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 E +L I P+ ++S CDPTR +KLLL++ E+D L + GYT+V+LSL+WK Sbjct: 61 NEMYLCNCLIEPLQMSSNRFSCDPTRKKKLLLHKNEIDFLSLKKKNTGYTMVSLSLFWKK 120 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157 +WCK++ G+AKGK DKR ++K+REW+ +K +I+K Sbjct: 121 SWCKLEFGLAKGKTAQDKRINLKKREWEQEKLKILKK 157 >UniRef50_A8EWH6 SsrA-binding protein n=48 Tax=Epsilonproteobacteria RepID=SSRP_ARCB4 Length = 158 Score = 177 bits (451), Expect = 7e-44, Method: Composition-based stats. Identities = 59/159 (37%), Positives = 99/159 (62%), Gaps = 3/159 (1%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M KK K + NK+A H++ I E EAG+ L+G EVK++R G+ N+ DS+V + Sbjct: 1 MANKKDTKKN--LVFKNKKAFHDFTILETLEAGIVLEGSEVKAIREGRVNLKDSFVRIIK 58 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 GE FL A+I+ ++ + D R+RKLLL+ +++D +Y +V ++G T+VAL LY+ Sbjct: 59 GEVFLLNAHISHLSTTHSTYRPDERRSRKLLLHSKQIDKMYSKVTKDGITLVALKLYFND 118 Query: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNA 158 K+++ A+GKK HDKR D+K + + + +++K+ Sbjct: 119 KNMIKIEVATAQGKKLHDKREDLKAKTMKRETEQVLKSF 157 >UniRef50_C5JAN1 SsrA-binding protein n=1 Tax=uncultured bacterium RepID=C5JAN1_9BACT Length = 153 Score = 177 bits (451), Expect = 8e-44, Method: Composition-based stats. Identities = 61/152 (40%), Positives = 95/152 (62%), Gaps = 4/152 (2%) Query: 11 SATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYV--LLRDGEAFLFGA 68 IALNK A+ +Y + E EAG+ L G+EVKS R G +I +S+V + GE +LF A Sbjct: 3 HKVIALNKLAKFDYSLLEVIEAGIVLTGFEVKSARLGGISIRESHVGEMQGSGELYLFNA 62 Query: 69 NITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK-NAWCKVKI 127 N A+T + +P R RKLLL +R+++ L G+V+R+G+T++ + +Y+ K++I Sbjct: 63 NFPEYIHATT-MKQEPKRPRKLLLGRRQINKLLGQVHRKGFTIIPVQMYFNEKGIIKIEI 121 Query: 128 GVAKGKKQHDKRSDIKEREWQVDKARIMKNAH 159 +A+GK DKR IK REW +K R++K + Sbjct: 122 ALAQGKNVVDKRETIKLREWDREKHRVLKASS 153 >UniRef50_Q2ST23 SsrA-binding protein n=4 Tax=Mollicutes RepID=SSRP_MYCCT Length = 148 Score = 177 bits (450), Expect = 1e-43, Method: Composition-based stats. Identities = 52/147 (35%), Positives = 90/147 (61%) Query: 10 GSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGAN 69 I NK+A Y I + ++AG+ L G E+KS+R +I++++VL+R E ++ N Sbjct: 2 SEHLIVKNKKAYFNYEIIQTYQAGIVLNGPEIKSIRNHDVSINEAFVLIRKKEIYILNMN 61 Query: 70 ITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGV 129 + A+ + TRTRKLLL+++E+ + ++ +E T++ + LY+KN + K++I + Sbjct: 62 VKKYQFANYIKGLEETRTRKLLLHKKEIIKILNKIKQENLTIIPIKLYFKNDYVKLEIAL 121 Query: 130 AKGKKQHDKRSDIKEREWQVDKARIMK 156 AKGKK HDKR IK+R+ + + R K Sbjct: 122 AKGKKLHDKRQTIKKRDTERKELRDYK 148 >UniRef50_Q3ARF1 SsrA-binding protein n=11 Tax=Chlorobiaceae RepID=SSRP_CHLCH Length = 157 Score = 177 bits (449), Expect = 1e-43, Method: Composition-based stats. Identities = 55/160 (34%), Positives = 96/160 (60%), Gaps = 4/160 (2%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M+K+ + A + N++ARHE+ I E F AG+ L G EVKS+R G+A++++S+ ++ Sbjct: 1 MSKQPQQRYAEAIV--NRKARHEFEIIETFVAGIQLAGSEVKSVRLGQASLNESFAIILR 58 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 E +L ITP V+ + R+RKLLL+++E+ L +V+ +G T+V L ++ Sbjct: 59 NEVWLENMQITPYKHNRMEVL-EAKRSRKLLLHKKEIAKLQAKVSEKGLTLVPLKAFFTP 117 Query: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNAH 159 + K+++ +A+GKK +DKR +K RE Q ++ K Sbjct: 118 HGLLKIELAIARGKKLYDKRETLKNRENQRHLDQLRKQYS 157 >UniRef50_B1AI43 SsrA-binding protein n=16 Tax=Mycoplasmataceae RepID=SSRP_UREP2 Length = 141 Score = 177 bits (449), Expect = 1e-43, Method: Composition-based stats. Identities = 49/138 (35%), Positives = 78/138 (56%), Gaps = 1/138 (0%) Query: 13 TIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITP 72 I NK AR Y + + FE G+ L+G EVKS+ +I+++YV + +A + ++ Sbjct: 1 MIVSNKHARRNYELLDFFECGIVLKGTEVKSISRANCSINEAYVQIIKNQALILNMHVAN 60 Query: 73 MAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKG 132 + DP R RKLLL+++E+ L V + T+V +YWKN K++I + KG Sbjct: 61 FFEGNN-FNQDPYRNRKLLLHKKEIIRLQHLVKTQHMTIVPTKIYWKNNKLKIEIALGKG 119 Query: 133 KKQHDKRSDIKEREWQVD 150 K+ HDKR DIK+R+ + Sbjct: 120 KQLHDKREDIKKRDLARE 137 >UniRef50_B7KVC8 SsrA-binding protein n=25 Tax=cellular organisms RepID=SSRP_METC4 Length = 157 Score = 176 bits (448), Expect = 2e-43, Method: Composition-based stats. Identities = 68/159 (42%), Positives = 96/159 (60%), Gaps = 4/159 (2%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M K PG +A N+ AR+ Y IE+ EAG+AL G EVKSLR GKA I +SY Sbjct: 1 MAPKPD--PGRRVVADNRSARYHYAIEDTLEAGIALTGTEVKSLRGGKATIGESYAGPSG 58 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 + LF A I A+ D R R+LLL++R+++ L G R+GYTV+ L +Y+ Sbjct: 59 NDLMLFNAYIPEYLEAN-RFNHDTKRPRRLLLHRRQINKLIGATQRQGYTVIPLKIYFND 117 Query: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNA 158 KV++G+ KGK+ HDKR +K+R+W DKAR+M++ Sbjct: 118 KGRAKVELGLGKGKQLHDKRESVKQRDWDRDKARLMRDK 156 >UniRef50_A0M3P0 SsrA-binding protein n=13 Tax=Bacteroidetes RepID=SSRP_GRAFK Length = 157 Score = 174 bits (443), Expect = 7e-43, Method: Composition-based stats. Identities = 53/145 (36%), Positives = 82/145 (56%), Gaps = 2/145 (1%) Query: 15 ALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPMA 74 N++A+ Y +++ AG+ L G E+K++R GKANI++S+ + E F+ ++ + Sbjct: 13 IKNRKAKFNYEFLDKYTAGIKLAGTEIKAIREGKANIAESFCEFNNHELFVINMHVEEYS 72 Query: 75 VASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK-NAWCKVKIGVAKGK 133 A TH +P RKLLL +REL L V G T++ L L+ K++I +AKGK Sbjct: 73 HA-THFNHNPRSQRKLLLQRRELRKLEKEVTNSGLTIIPLRLFINDRGLAKLQISLAKGK 131 Query: 134 KQHDKRSDIKEREWQVDKARIMKNA 158 K +DKR IK+RE + RI K Sbjct: 132 KLYDKRETIKDRESKRRLDRIQKEY 156 >UniRef50_B7GAQ2 Predicted protein (Fragment) n=3 Tax=Bacillariophyta RepID=B7GAQ2_PHATR Length = 160 Score = 172 bits (438), Expect = 2e-42, Method: Composition-based stats. Identities = 52/158 (32%), Positives = 85/158 (53%), Gaps = 3/158 (1%) Query: 4 KKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDG-- 61 KK +K +TI++N+ A Y I + EAG++L G EVKS+R GK N+ D Y+ Sbjct: 1 KKKNKTRDSTISVNRVAYRNYEIVDTIEAGISLVGTEVKSIRNGKLNLRDGYIRPTKDGR 60 Query: 62 EAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK-N 120 L+ +I + A + TR R LL+++ E + ++G T+V L Y+ Sbjct: 61 SCILYNVHIGKHSQAGAFFQHEETRPRALLVHKAEARKFLQQTEQQGMTIVPLKAYYNDK 120 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNA 158 K++I + +GK DKR IKER+ + ++ RI+K+ Sbjct: 121 NRVKLQIALCRGKNVRDKRVTIKERDAKREERRIIKSF 158 >UniRef50_B3EUI8 SsrA-binding protein n=4 Tax=Bacteroidetes RepID=B3EUI8_AMOA5 Length = 156 Score = 172 bits (436), Expect = 4e-42, Method: Composition-based stats. Identities = 53/154 (34%), Positives = 85/154 (55%), Gaps = 5/154 (3%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M KK G + NK+A EY ++F AG+ L G E+KS+R K ++ ++Y + Sbjct: 1 MNVKKNKTTG--LVIRNKQASFEYTFIDKFIAGIVLTGTEIKSIRKAKVSLQEAYCYFKS 58 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYW-K 119 GE ++ +I + + R RKLLL ++EL+ L + +G T++ + L+ + Sbjct: 59 GELWIKSMHIAQYEQGNIY-NHVENRERKLLLTRKELNKLI-KNQEKGLTIIPIQLFIDE 116 Query: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKAR 153 N K++I +AKGKK +DKR IKER+ Q D R Sbjct: 117 NNRAKLQIALAKGKKLYDKRQHIKERDVQRDMER 150 >UniRef50_Q11TP3 SsrA-binding protein n=36 Tax=Bacteroidetes RepID=SSRP_CYTH3 Length = 153 Score = 169 bits (429), Expect = 3e-41, Method: Composition-based stats. Identities = 53/141 (37%), Positives = 83/141 (58%), Gaps = 2/141 (1%) Query: 15 ALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPMA 74 NK+A EY E++EAG+ L+G E+K++R KA+IS++Y L + E ++ NI+ Sbjct: 12 IKNKKASFEYEFLEKYEAGIVLKGTEIKAIRMSKASISEAYCLFDNEELWIKNMNISSYD 71 Query: 75 VASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK-NAWCKVKIGVAKGK 133 S DP RKLLL + EL L+ +G T++AL L+ + K++I +AKGK Sbjct: 72 KGS-FYNHDPLSARKLLLRKAELKKLFMHSKEKGLTIIALRLFTNERGYAKIEIALAKGK 130 Query: 134 KQHDKRSDIKEREWQVDKARI 154 K +DKR IK ++ + + RI Sbjct: 131 KLYDKRESIKSKDNEREMQRI 151 >UniRef50_B1GZD8 SsrA-binding protein SmpB n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1GZD8_UNCTG Length = 153 Score = 167 bits (423), Expect = 1e-40, Method: Composition-based stats. Identities = 51/145 (35%), Positives = 83/145 (57%), Gaps = 2/145 (1%) Query: 12 ATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANIT 71 T++ N++A + Y I E+ E G+ L G+EVKS R ++ DS V D EAF I Sbjct: 8 KTLSSNRKAYYNYEILEKLETGIVLSGYEVKSARQSNISLVDSVVRFSDCEAFAENMFIA 67 Query: 72 PMAVASTHVV-CDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYW-KNAWCKVKIGV 129 STH+ D R RKLL+++ E++ + +V +G TV+ L +Y K+ IG+ Sbjct: 68 SYEQISTHIADYDAKRKRKLLMHKSEINKMRTKVKEKGLTVIPLEVYIGNRGKIKLLIGL 127 Query: 130 AKGKKQHDKRSDIKEREWQVDKARI 154 AKGKK ++K+ +K+++ + + AR Sbjct: 128 AKGKKTYNKKEALKKKDIEREVARE 152 >UniRef50_Q6Q8U8 Predicted SsrA n=1 Tax=uncultured marine gamma proteobacterium EBAC20E09 RepID=Q6Q8U8_9GAMM Length = 156 Score = 166 bits (421), Expect = 2e-40, Method: Composition-based stats. Identities = 60/154 (38%), Positives = 93/154 (60%), Gaps = 1/154 (0%) Query: 7 HKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLF 66 K + I NK A + + E F+AG+ L+GWEVKSLR K ++ +SYV +R GEA+L Sbjct: 2 SKEKTVLIVKNKNASRNFKLNESFQAGIVLEGWEVKSLRDSKVDVKNSYVNIRKGEAWLI 61 Query: 67 GANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVK 126 G I + + D T++RKLLL+++E+ + +G T V +YWK+ K Sbjct: 62 GVKID-IPASLQQENIDTTKSRKLLLHKKEIAKIERLKGEKGLTCVLTRIYWKDNLIKCD 120 Query: 127 IGVAKGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 I + +GKK D+R DIK+R+W+ D+ RI+KN+ + Sbjct: 121 IAMGQGKKHRDQREDIKKRDWERDQGRILKNSKK 154 >UniRef50_UPI00016992A0 SsrA-binding protein n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI00016992A0 Length = 148 Score = 165 bits (420), Expect = 3e-40, Method: Composition-based stats. Identities = 61/107 (57%), Positives = 89/107 (83%) Query: 13 TIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITP 72 TIALNK+A+H+YFIEE +EAG+AL+GWEVKSLRAG+ N++++YV++ GEA+LFGANI+P Sbjct: 16 TIALNKKAKHDYFIEERYEAGVALEGWEVKSLRAGRINLTEAYVIINKGEAYLFGANISP 75 Query: 73 MAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK 119 + S+H+ +PTR RKLLL++ EL+ L G V R+G+T+V ++Y + Sbjct: 76 LPTVSSHIQPNPTRNRKLLLHRTELNKLIGLVERKGFTLVPTAMYLE 122 >UniRef50_Q89AM9 SsrA-binding protein n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=SSRP_BUCBP Length = 158 Score = 165 bits (420), Expect = 4e-40, Method: Composition-based stats. Identities = 63/156 (40%), Positives = 102/156 (65%), Gaps = 2/156 (1%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M + KP I +N++A++ + I+E FEAG+ L GWEVKS+R GK NIS+SY+ L++ Sbjct: 1 MKRNSNRKPNE--ICINRKAKYSFSIKETFEAGIVLLGWEVKSVRCGKINISNSYISLKN 58 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 GE +L + P++ ++ ++ + R +K+LL +RE+ LY ++ + T++ LS+++K Sbjct: 59 GEMYLVNSQFDPISKSNLYITYECNRIKKILLRKREITYLYSKLYKSHLTIIVLSIFFKK 118 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMK 156 WCKVKIG+AKGK DKR K EW+ + R +K Sbjct: 119 QWCKVKIGIAKGKTIKDKREHKKLSEWKKTQNRFVK 154 >UniRef50_P75043 SsrA-binding protein n=2 Tax=Mycoplasma RepID=SSRP_MYCPN Length = 147 Score = 164 bits (417), Expect = 8e-40, Method: Composition-based stats. Identities = 46/141 (32%), Positives = 82/141 (58%), Gaps = 1/141 (0%) Query: 12 ATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANIT 71 + N RA+++Y++ + AGL L+G EVKSL G+ ++ ++YV + E ++ +I+ Sbjct: 2 RVLVNNPRAQYDYYLLTGYCAGLVLKGSEVKSLALGQGSLKEAYVFIDKHEVYIKDFSIS 61 Query: 72 PMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAK 131 P A + R +KLLLN+ E+ + R +EG +++ L +++KN K++I +AK Sbjct: 62 PYAFSGE-FNHPFKRVKKLLLNRNEIKQITARQKQEGLSIIPLKVFFKNGKIKMEIWLAK 120 Query: 132 GKKQHDKRSDIKEREWQVDKA 152 KK+ DKR IK + Q + Sbjct: 121 PKKKFDKREAIKSKTIQRELR 141 >UniRef50_B1VAG4 SsrA-binding protein n=2 Tax=Candidatus Phytoplasma RepID=B1VAG4_PHYAS Length = 176 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 52/149 (34%), Positives = 96/149 (64%), Gaps = 2/149 (1%) Query: 12 ATIALNKRARHEYFIEEE-FEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANI 70 TIA NK+A ++F+E++ + AG+ L G EVKS+R GK ++++SY +++ E F+ +I Sbjct: 28 KTIATNKKAVFDFFLEKKKYHAGIKLLGNEVKSIRLGKISLNNSYAYIKNNEIFIVNLSI 87 Query: 71 TPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVA 130 S + D RT+KLLL ++E+ + ++ +G++V+ L +Y++ KV+I +A Sbjct: 88 LKYPF-SCCMQYDENRTKKLLLRKQEIIQIQNKIKTQGFSVIPLKVYFEKNLVKVEIVLA 146 Query: 131 KGKKQHDKRSDIKEREWQVDKARIMKNAH 159 KGKK++DKR+ +KE+ Q+ + +K + Sbjct: 147 KGKKKYDKRNSLKEKAAQLSIQKNLKKIN 175 >UniRef50_C6X237 TmRNA-binding protein SmpB n=2 Tax=Flavobacteriales RepID=C6X237_FLAB3 Length = 155 Score = 164 bits (416), Expect = 1e-39, Method: Composition-based stats. Identities = 60/159 (37%), Positives = 86/159 (54%), Gaps = 5/159 (3%) Query: 1 MTKKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRD 60 M K K K LN+RAR EY + EE EAG+ L G E+KSLR+ KA+I+D++ D Sbjct: 1 MFKMKIEKS---VTILNRRARFEYELLEEIEAGMVLTGTEIKSLRSSKASITDAFCQFID 57 Query: 61 GEAFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK- 119 GE ++ I + T R RKLLL++ EL ++ G T++ L +Y Sbjct: 58 GELYIINMMIDEYKL-GTFYNHKTKRERKLLLHKTELKKFEKKLKDVGNTIIPLKMYINA 116 Query: 120 NAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKNA 158 K+ I V +GKK DKR IK+RE + + RI+K + Sbjct: 117 KGKAKILIAVGRGKKLFDKRESIKDRENKRNIDRILKKS 155 >UniRef50_Q1LSR7 SsrA-binding protein n=17 Tax=Gammaproteobacteria RepID=SSRP_BAUCH Length = 161 Score = 162 bits (411), Expect = 4e-39, Method: Composition-based stats. Identities = 93/149 (62%), Positives = 123/149 (82%) Query: 12 ATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANIT 71 TI NKR R+EYFIE+EFEAG++L GWEVKSLRAG +I+DSY+LL+D EAFL GA + Sbjct: 13 TTITQNKRVRYEYFIEQEFEAGISLLGWEVKSLRAGIVHINDSYILLKDSEAFLLGATLR 72 Query: 72 PMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAK 131 P+ VAS+H++ P R+RKLLL +RELD+L G+V+R+GYT+V +SLYW+N+ K+++G+AK Sbjct: 73 PLIVASSHILYSPMRSRKLLLRRRELDTLLGKVHRKGYTIVPISLYWRNSLAKIQLGIAK 132 Query: 132 GKKQHDKRSDIKEREWQVDKARIMKNAHR 160 GKKQ+DKR IKEREW ++KARI K HR Sbjct: 133 GKKQYDKRHCIKEREWLLNKARITKLVHR 161 >UniRef50_Q0SPD1 SsrA-binding protein n=20 Tax=Borrelia RepID=SSRP_BORAP Length = 150 Score = 159 bits (403), Expect = 3e-38, Method: Composition-based stats. Identities = 50/146 (34%), Positives = 89/146 (60%), Gaps = 1/146 (0%) Query: 11 SATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANI 70 + + NK+A+ YFIEE+ G+ L+G EVKS++A K + ++S+ +++ E +L ++ Sbjct: 4 NTLLIENKKAKFNYFIEEKISCGIVLKGTEVKSIKAKKLSFNNSFAIIKKEELWLENLHV 63 Query: 71 TPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVA 130 + + D R RKLL+ ++EL L +EGYT++ +S Y K + KV++G+ Sbjct: 64 SKYKEGNI-FNHDELRPRKLLIKKKELQRLKKFKEKEGYTLIPISFYLKKSIIKVEVGIC 122 Query: 131 KGKKQHDKRSDIKEREWQVDKARIMK 156 KGKK +DKR +K++ + D +R +K Sbjct: 123 KGKKLYDKREILKQKSIKKDLSREIK 148 >UniRef50_Q7VRQ2 TmRNA-binding protein n=2 Tax=Candidatus Blochmannia RepID=Q7VRQ2_BLOFL Length = 148 Score = 157 bits (399), Expect = 9e-38, Method: Composition-based stats. Identities = 67/147 (45%), Positives = 98/147 (66%), Gaps = 1/147 (0%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPM 73 I NKR H+YFIE+E E GL L GWEVKS+R+ K I +SYV LRD EA++ AN + Sbjct: 3 IIQNKRVHHKYFIEKEIETGLVLLGWEVKSIRSRKITIENSYVSLRDQEAYMCNANFQ-I 61 Query: 74 AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGK 133 DPTR RKLLL ++EL L ++++ YT++ L+L+WKN+W K IG+AKGK Sbjct: 62 QTNMNVSTPDPTRMRKLLLKKQELSFLTEIMHKKSYTIIILNLFWKNSWIKANIGIAKGK 121 Query: 134 KQHDKRSDIKEREWQVDKARIMKNAHR 160 K++DKR + +W++++ I+K ++ Sbjct: 122 KKYDKRHIVNTHQWKLEQKHIIKCVNK 148 >UniRef50_A5KSW6 SsrA-binding protein n=2 Tax=candidate division TM7 RepID=A5KSW6_9BACT Length = 154 Score = 157 bits (397), Expect = 2e-37, Method: Composition-based stats. Identities = 49/156 (31%), Positives = 82/156 (52%), Gaps = 6/156 (3%) Query: 3 KKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGE 62 KKK G+ LN+RA+ +Y + +E GL L G EV++ R G + +YV +R+ E Sbjct: 2 KKKTTTSGA---VLNRRAKFDYELGDELAVGLVLNGPEVRAARDGHVQLKGAYVTIRNDE 58 Query: 63 AFLFGANIT--PMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN 120 +L A+ + P T+ RKLL +++++ +L + + G T+V L L+ Sbjct: 59 LWLNNASFSVKPAQPKRGDARAVDTQPRKLLAHRKQIATLAEQ-KKTGLTIVPLKLFTSG 117 Query: 121 AWCKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMK 156 K+ I KGKK++DKR +K R + + R M+ Sbjct: 118 RHIKLLIAAGKGKKKYDKRETLKRRAQEREAQRAMR 153 >UniRef50_Q6YR70 SsrA-binding protein n=3 Tax=Candidatus Phytoplasma asteris RepID=SSRP_ONYPE Length = 152 Score = 156 bits (395), Expect = 3e-37, Method: Composition-based stats. Identities = 52/150 (34%), Positives = 94/150 (62%), Gaps = 2/150 (1%) Query: 12 ATIALNKRARHEYFIEEE-FEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANI 70 TI NK+A ++Y +E++ ++AG+ L G EVKS+R GK N+ +SY+ +++ EAF+ I Sbjct: 2 KTIITNKKAFYDYSLEKKKYQAGIKLLGSEVKSIRIGKINLLNSYIHIKNEEAFIVNMTI 61 Query: 71 TPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVA 130 S + D RT+KLLL + E+ + ++ E +V+ L +Y+ K++I ++ Sbjct: 62 LKYPF-SCCLAYDENRTKKLLLQKHEIIQIKNKIKTEKLSVIPLKVYFNKNLVKLEIALS 120 Query: 131 KGKKQHDKRSDIKEREWQVDKARIMKNAHR 160 KGKKQHDKR+ +K+ + ++ + +KN ++ Sbjct: 121 KGKKQHDKRNALKDFDAKLRIQKTLKNFNQ 150 >UniRef50_Q601U1 SsrA-binding protein n=3 Tax=Mycoplasma hyopneumoniae RepID=SSRP_MYCH2 Length = 145 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 48/147 (32%), Positives = 80/147 (54%), Gaps = 4/147 (2%) Query: 13 TIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITP 72 + NKRA +Y I + F AG+ L GWEVKS++A ++ ++ + E FL A I+ Sbjct: 3 ILIKNKRANFDYEIIDRFTAGIVLLGWEVKSIQAKNISLVGAFCYFKGHELFLSNAKISE 62 Query: 73 MAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKG 132 + R+RKLL+++ EL + ++ L + KN K++I +AKG Sbjct: 63 YKGSRGQ----TDRSRKLLMHKHELKKILKEKITRKLAIIPLFIGQKNRKIKLEIALAKG 118 Query: 133 KKQHDKRSDIKEREWQVDKARIMKNAH 159 K + DKR+ IKER+ + + A+ +KN + Sbjct: 119 KTKLDKRNLIKERDQKREAAKFLKNYY 145 >UniRef50_B3PM30 SsrA-binding protein n=2 Tax=Mycoplasma RepID=B3PM30_MYCA5 Length = 143 Score = 151 bits (382), Expect = 9e-36, Method: Composition-based stats. Identities = 51/139 (36%), Positives = 73/139 (52%), Gaps = 5/139 (3%) Query: 12 ATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLL-RDGEAFLFGANI 70 A I NK + EY I +E G++L GWE KSLRA A + S+ + + E +L A I Sbjct: 2 ALIVKNKFPKLEYEIHSTYECGISLLGWEAKSLRAKNAKLESSFCSISQSDELWLNNAYI 61 Query: 71 TPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVA 130 + V DP R+RKLL+++ E+ L R + LS YW+ KV+I +A Sbjct: 62 AQYML----VKGDPLRSRKLLMHRHEIKKLRSLQQRLNLIFIPLSFYWRGNKIKVEIALA 117 Query: 131 KGKKQHDKRSDIKEREWQV 149 K +HDKR IK+ E + Sbjct: 118 KHLNKHDKREKIKKDEAKK 136 >UniRef50_Q6KI26 SsrA-binding protein n=1 Tax=Mycoplasma mobile RepID=SSRP_MYCMO Length = 142 Score = 149 bits (377), Expect = 3e-35, Method: Composition-based stats. Identities = 49/143 (34%), Positives = 81/143 (56%), Gaps = 4/143 (2%) Query: 12 ATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANIT 71 I NK A Y I E+++AGL L+GWEVKS+R K + +++ ++ EA++ +I+ Sbjct: 2 KIIIKNKDAFFNYEILEKYKAGLILKGWEVKSIRENKVQLKGAFITFKNDEAYITNMHIS 61 Query: 72 PMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAK 131 V + RKLLLN+ E+ + + NR V+ L+L+W N + K++I +AK Sbjct: 62 QYMS----VKGNELEPRKLLLNKHEIRHIQDKKNRNSLAVIPLNLFWDNNYIKLEIALAK 117 Query: 132 GKKQHDKRSDIKEREWQVDKARI 154 GK + DKR I E++ + +I Sbjct: 118 GKTKADKRHRILEKDVRKHLKKI 140 >UniRef50_A9G6R4 SmpB-like protein n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9G6R4_SORC5 Length = 139 Score = 149 bits (376), Expect = 4e-35, Method: Composition-based stats. Identities = 52/122 (42%), Positives = 74/122 (60%), Gaps = 2/122 (1%) Query: 34 LALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPMAVASTHVVCDPTRTRKLLLN 93 + L G EVK LR G A ++DS+ + +GEAFL G NI M A+ + R RKLLL+ Sbjct: 1 MVLLGSEVKMLRDGAAELTDSWCAIENGEAFLKGVNIPVMPGAA--FGHEAKRPRKLLLH 58 Query: 94 QRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGKKQHDKRSDIKEREWQVDKAR 153 + E++++ V REG TV+A LY+KN K +I +AKGKK DKR +KE++ + Sbjct: 59 ESEIEAIRKSVEREGMTVIATRLYFKNGRVKAEIALAKGKKTVDKRESLKEKDATREARA 118 Query: 154 IM 155 M Sbjct: 119 AM 120 >UniRef50_Q7NB37 SsrA-binding protein n=1 Tax=Mycoplasma gallisepticum RepID=SSRP_MYCGA Length = 144 Score = 148 bits (375), Expect = 6e-35, Method: Composition-based stats. Identities = 50/142 (35%), Positives = 79/142 (55%), Gaps = 1/142 (0%) Query: 12 ATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANIT 71 + NK+A++ Y + +++EAG++L G EVKSL + DSYV++R EA+L I Sbjct: 3 RLLVNNKKAKYNYELLDKYEAGISLSGNEVKSLALHHGKLDDSYVIIRKNEAYLLNLLIP 62 Query: 72 PMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAK 131 T V + TRTRKLLL++ E+ + + ++ +Y+ N KV I +A+ Sbjct: 63 KYKF-DTSKVLNETRTRKLLLHKSEILKIDLIKKQHSLVIIPYQIYFVNNKIKVSIYLAR 121 Query: 132 GKKQHDKRSDIKEREWQVDKAR 153 KK++DKR IKERE + Sbjct: 122 PKKRYDKRQTIKEREINKKIRK 143 >UniRef50_Q057R8 TmRNA-binding protein n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q057R8_BUCCC Length = 156 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 52/135 (38%), Positives = 85/135 (62%) Query: 22 HEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPMAVASTHVV 81 + ++I+++F +G+ LQGWEVKS+RAG ISD +V++++ E +L P+ S Sbjct: 17 YNFYIKKKFISGIELQGWEVKSIRAGHVQISDGHVIIKNNEVYLTNVQFQPLIYTSDLKF 76 Query: 82 CDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGKKQHDKRSD 141 C R RKLLL ++E+ L ++GYT+V + L+W +WCK+KI + KGK + DKR D Sbjct: 77 CLSNRVRKLLLKKKEIFFLKMYSIKKGYTIVPIKLFWIKSWCKIKIALVKGKSKMDKRQD 136 Query: 142 IKEREWQVDKARIMK 156 + W++++ I K Sbjct: 137 KRNNSWKIERDTIFK 151 >UniRef50_C1D1M8 Putative SsrA-binding protein n=1 Tax=Deinococcus deserti VCD115 RepID=C1D1M8_DEIDV Length = 143 Score = 144 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 54/139 (38%), Positives = 81/139 (58%), Gaps = 1/139 (0%) Query: 14 IALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPM 73 + N+RA +EY + E FEAG++L G EVKS+RAG + D++ L G L G I Sbjct: 4 VYTNRRAHYEYELLERFEAGISLTGSEVKSIRAGGVDFRDAFARLHGGNVDLEGLYIPAY 63 Query: 74 AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAKGK 133 A T+ +P RTR+LLLN+ E+ L + ++G T+V LY K + KV++ +A+GK Sbjct: 64 KEA-TYNNHEPRRTRRLLLNRMEILKLKKGLEQKGLTLVPTRLYQKGQYFKVELALARGK 122 Query: 134 KQHDKRSDIKEREWQVDKA 152 K HDKR E+ + + Sbjct: 123 KLHDKRRADAEKTVRRELR 141 >UniRef50_A5IZI0 SsrA-binding protein n=3 Tax=Mycoplasma RepID=SSRP_MYCAP Length = 147 Score = 141 bits (356), Expect = 9e-33, Method: Composition-based stats. Identities = 47/145 (32%), Positives = 84/145 (57%), Gaps = 6/145 (4%) Query: 12 ATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANIT 71 I+ N++ + Y I E+ EAG++L GWEVKS RA N+++SY+ + GE FL AN Sbjct: 2 KVISENRKGLYGYKIIEKHEAGISLLGWEVKSARAQTVNLTNSYIFFKKGELFLCNANFA 61 Query: 72 PMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVV-ALSLYWKN-AWCKVKIGV 129 + + + R RKLL++++E+ L +++R T + +Y+ N + KV+I + Sbjct: 62 KYML----LKVEEDRDRKLLMHKKEIIRLKNKLDRLSSTTIKPTKIYFNNKSKIKVEIAL 117 Query: 130 AKGKKQHDKRSDIKEREWQVDKARI 154 +G + DKR D+K+R+ + ++ Sbjct: 118 VQGMNRADKREDLKKRDNEKYMQKV 142 >UniRef50_Q8D389 SmpB protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D389_WIGBR Length = 160 Score = 138 bits (350), Expect = 4e-32, Method: Composition-based stats. Identities = 70/155 (45%), Positives = 106/155 (68%) Query: 3 KKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGE 62 KKK + I+ NKRA++ +I++E EAGL+L+GWEVKSLR+ +IS SYV L+ Sbjct: 2 KKKNTEKNFLIISRNKRAKYNTYIKKEMEAGLSLKGWEVKSLRSNNISISTSYVTLKSSS 61 Query: 63 AFLFGANITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAW 122 A+L GA + + + + R +LLL++ E++SL+G V +GY++V +SLYWK Sbjct: 62 AYLTGAVFQSNTNNNMNFIYEKERNIQLLLHKHEINSLFGYVKIKGYSIVVISLYWKYHK 121 Query: 123 CKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157 K+KIG+AKGKK+ DKR +IK+REW++ K+R+ K Sbjct: 122 AKLKIGIAKGKKKIDKRLEIKKREWEIKKSRLFKK 156 >UniRef50_A8Z637 SsrA (TmRNA)-binding protein n=2 Tax=Candidatus Sulcia muelleri RepID=A8Z637_SULMW Length = 146 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 37/141 (26%), Positives = 77/141 (54%), Gaps = 6/141 (4%) Query: 15 ALNKRARHEYFIEEEFE--AGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITP 72 N+RA +Y + +++ AG+ L G EVKS++ ++++SY L ++F I+ Sbjct: 7 INNRRAYFDYELINKYKFIAGIELLGSEVKSIKNNNVSLNNSYCKLIKNNIYVFDMYISN 66 Query: 73 MAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK-NAWCKVKIGVAK 131 + + +P R +KLLL ++E++ +Y ++N ++ +++ + K+ +AK Sbjct: 67 YLLG---INFNPKRVKKLLLKRKEINFIYNKINELKLNIIPTNIFLNERGYIKLIFFLAK 123 Query: 132 GKKQHDKRSDIKEREWQVDKA 152 KK +DKR IK + ++ +K Sbjct: 124 SKKNYDKRQSIKNKYFEREKN 144 >UniRef50_Q4A5T2 SsrA-binding protein n=2 Tax=Mycoplasma RepID=SSRP_MYCS5 Length = 143 Score = 128 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 38/127 (29%), Positives = 71/127 (55%), Gaps = 6/127 (4%) Query: 12 ATIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANIT 71 IA NK A+ Y I + FEAG+ L+GWEVKS RA + ++Y + E FL + Sbjct: 2 KIIATNKNAKRNYEILKTFEAGIKLEGWEVKSARASSVELKNAYCSIYKDEVFLKESYFK 61 Query: 72 PMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWK-NAWCKVKIGVA 130 + + + T+ RKLLL+++E+ + + ++ +++ +Y+ N+ KV++ + Sbjct: 62 KYML----LKVEETKNRKLLLHKKEILKIKQEL-QKNLSLIPTKIYFNSNSLIKVELALG 116 Query: 131 KGKKQHD 137 +G K++D Sbjct: 117 RGLKKYD 123 >UniRef50_D0N0I1 Putative uncharacterized protein n=1 Tax=Phytophthora infestans T30-4 RepID=D0N0I1_PHYIN Length = 180 Score = 125 bits (315), Expect = 5e-28, Method: Composition-based stats. Identities = 44/141 (31%), Positives = 67/141 (47%), Gaps = 6/141 (4%) Query: 18 KRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITPMAVAS 77 K A + Y +E E+ G+ LQ EVKSLR A++S ++ E FL NI P+ Sbjct: 44 KAAGNYYEVEREWNLGIVLQPSEVKSLRNRNADLSTAFGAFYKHELFLHDLNI-PVWRQG 102 Query: 78 THVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN-AWCKVKIGVAKGKKQH 136 +PTR RKLL N+ EL L NR ++ + + N W KV + + Q Sbjct: 103 LIGRPEPTRVRKLLANRSELKKLQEFANRPNAQLIPMRIEVGNTGWIKVIMAACFKRGQI 162 Query: 137 DKRSDIKEREWQVDKARIMKN 157 D R R+ + + R +++ Sbjct: 163 DNR----RRDDEREIKRQLRD 179 >UniRef50_C6SHY7 SsrA-binding protein n=1 Tax=Neisseria meningitidis alpha275 RepID=C6SHY7_NEIME Length = 146 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 45/95 (47%), Positives = 65/95 (68%), Gaps = 1/95 (1%) Query: 64 FLFGANITPM-AVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAW 122 F++ A I + ASTH+ D R RKLLLNQ E++ L G+ R GYT+V L L++ Sbjct: 50 FIWSAAILRLCPTASTHIKPDAVRPRKLLLNQSEINKLIGKTERAGYTIVPLDLHFSRGK 109 Query: 123 CKVKIGVAKGKKQHDKRSDIKEREWQVDKARIMKN 157 K++IG+AKGKKQHDKR +KE +W+ +K R++K+ Sbjct: 110 IKMEIGLAKGKKQHDKRQSMKEADWKREKQRLIKH 144 >UniRef50_C7LKD3 SsrA (TmRNA)-binding protein n=1 Tax=Candidatus Sulcia muelleri SMDSEM RepID=C7LKD3_SULMS Length = 150 Score = 87.8 bits (217), Expect = 1e-16, Method: Composition-based stats. Identities = 40/141 (28%), Positives = 74/141 (52%), Gaps = 5/141 (3%) Query: 12 ATIALNKRARHEYFIE--EEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGAN 69 I NK+A +Y + E+F AG+ L G EVK ++ K +I +SY L + ++F Sbjct: 2 KLIINNKKAGFDYNLLKKEKFLAGIELLGIEVKLIKQKKVSIKNSYCKLINNNIYIFDMY 61 Query: 70 ITPMAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKN-AWCKVKIG 128 I+ + +T P R RKLLL ++E++ + ++ ++ + N + K+K Sbjct: 62 ISNSNIYNTKFS--PKRRRKLLLKKKEINQIKKQIKNLNLNIIPTEIVLNNRNFIKIKFF 119 Query: 129 VAKGKKQHDKRSDIKEREWQV 149 +AK KK+++KR+ K + + Sbjct: 120 LAKSKKKYEKRNLRKIKSLEK 140 >UniRef50_Q7P475 Small protein B n=1 Tax=Fusobacterium nucleatum subsp. vincentii ATCC 49256 RepID=Q7P475_FUSNV Length = 84 Score = 83.9 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 44/58 (75%) Query: 13 TIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANI 70 IA NK+A +YFIEE++EAG+ L+G EVKS++AGK +I +S+V + + E F+ G ++ Sbjct: 2 IIANNKKAFFDYFIEEKYEAGIELKGSEVKSIKAGKVSIKESFVRIINDEIFIMGMSV 59 >UniRef50_UPI0001912596 SsrA-binding protein n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. E98-3139 RepID=UPI0001912596 Length = 98 Score = 65.4 bits (159), Expect = 6e-10, Method: Composition-based stats. Identities = 40/47 (85%), Positives = 42/47 (89%), Gaps = 1/47 (2%) Query: 3 KKKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVK-SLRAGK 48 ++KAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVK S R Sbjct: 6 EEKAHKPGSATIALNKRARHEYFIEEEFEAGLALQGWEVKISARRKS 52 >UniRef50_Q05FT0 Putative uncharacterized protein n=1 Tax=Candidatus Carsonella ruddii PV RepID=Q05FT0_CARRP Length = 116 Score = 43.5 bits (102), Expect = 0.003, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 50/119 (42%), Gaps = 16/119 (13%) Query: 13 TIALNKRARHEYFIEEEFEAGLALQGWEVKSLRAGKANISDSYVLLRDGEAFLFGANITP 72 + NK+ +YFI + F AG+ L+ ++ ++ NI+D + L D L Sbjct: 1 MLKKNKKILTKYFIIKTFIAGMILKSNDILIIKKNILNINDYIIKLSDNNINLIN----- 55 Query: 73 MAVASTHVVCDPTRTRKLLLNQRELDSLYGRVNREGYTVVALSLYWKNAWCKVKIGVAK 131 + LLLN+RE + + + Y + + L+ N K+KI + K Sbjct: 56 -----------KKKKIILLLNKREQNIILYYNYNKNYKCIPIELFKLNFLFKLKISIVK 103 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.181 0.605 Lambda K H 0.267 0.0556 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 857,471,395 Number of Sequences: 3077464 Number of extensions: 47974495 Number of successful extensions: 117561 Number of sequences better than 1.0e-01: 125 Number of HSP's better than 0.1 without gapping: 241 Number of HSP's successfully gapped in prelim test: 6 Number of HSP's that attempted gapping in prelim test: 117049 Number of HSP's gapped (non-prelim): 249 length of query: 160 length of database: 1,040,396,356 effective HSP length: 118 effective length of query: 42 effective length of database: 677,255,604 effective search space: 28444735368 effective search space used: 28444735368 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 88 (38.1 bits)