Phyre 2 Results for P0A832

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Email | l.a.kelley@imperial.ac.uk
Description | P0A832
Date | Thu Jan 5 11:06:45 GMT 2012
Unique Job ID | 49090ff2c04b7be7

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1p6va_
Top template information
Fold:Small protein B (SmpB) Superfamily:Small protein B (SmpB) Family:Small protein B (SmpB)
Confidence and coverage
Confidence: | 100.0% | Coverage: | 77%
123 residues ( 77% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | T | K | K | K | A | H | K | P | G | S | A | T | I | A | L | N | K | R | A | R | H | E | Y | F | I | E | E | E | F | E | A | G | L | A | L | Q | G | W | E | V | K | S | L | R | A | G | K | A | N | I | S | D | S | Y | V | L | L | R | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  | ? |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | G | E | A | F | L | F | G | A | N | I | T | P | M | A | V | A | S | T | H | V | V | C | D | P | T | R | T | R | K | L | L | L | N | Q | R | E | L | D | S | L | Y | G | R | V | N | R | E | G | Y | T | V | V | A | L | S | L | Y | W | K | N
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160
Sequence |  | A | W | C | K | V | K | I | G | V | A | K | G | K | K | Q | H | D | K | R | S | D | I | K | E | R | E | W | Q | V | D | K | A | R | I | M | K | N | A | H | R
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1p6va_ |

### PDB 1p6v chain A

Region: 9 - 135
Aligned: 123
Modelled: 127
Confidence: 100.0%
Identity: 50%
Fold: Small protein B (SmpB)
Superfamily: Small protein B (SmpB)
Family: Small protein B (SmpB)

Phyre2
2 |
| c1p6vC_ |

### PDB 1p6v chain C

Region: 9 - 135
Aligned: 123
Modelled: 127
Confidence: 100.0%
Identity: 50%
PDB header:rna binding protein/rna
Chain: C: PDB Molecule:ssra-binding protein;
PDBTitle: crystal structure of the trna domain of transfer-messenger2 rna in complex with smpb

Phyre2
3 |
| c1j1hA_ |

### PDB 1j1h chain A

Region: 12 - 133
Aligned: 121
Modelled: 122
Confidence: 100.0%
Identity: 46%
PDB header:rna binding protein
Chain: A: PDB Molecule:small protein b;
PDBTitle: solution structure of a tmrna-binding protein, smpb, from2 thermus thermophilus

Phyre2
4 |
| d1wjxa_ |

### PDB 1wjx chain A

Region: 14 - 133
Aligned: 111
Modelled: 120
Confidence: 100.0%
Identity: 51%
Fold: Small protein B (SmpB)
Superfamily: Small protein B (SmpB)
Family: Small protein B (SmpB)

Phyre2
5 |
| d2ipqx1 |

### PDB 2ipq chain X domain 1

Region: 27 - 66
Aligned: 40
Modelled: 40
Confidence: 37.1%
Identity: 28%
Fold: DNA/RNA-binding 3-helical bundle
Superfamily: "Winged helix" DNA-binding domain
Family: STY4665 C-terminal domain-like

Phyre2
6 |
| c2qnkA_ |

### PDB 2qnk chain A

Region: 20 - 89
Aligned: 66
Modelled: 70
Confidence: 31.9%
Identity: 33%
PDB header:oxidoreductase
Chain: A: PDB Molecule:3-hydroxyanthranilate 3,4-dioxygenase;
PDBTitle: crystal structure of human 3-hydroxyanthranilate 3,4-dioxygenase

Phyre2
7 |
| c2agaA_ |

### PDB 2aga chain A

Region: 60 - 115
Aligned: 56
Modelled: 56
Confidence: 24.9%
Identity: 14%
PDB header:transcription
Chain: A: PDB Molecule:machado-joseph disease protein 1;
PDBTitle: de-ubiquitinating function of ataxin-3: insights from the2 solution structure of the josephin domain

Phyre2
8 |
| d1sdwa2 |

### PDB 1sdw chain A domain 2

Region: 30 - 68
Aligned: 39
Modelled: 39
Confidence: 21.0%
Identity: 15%
Fold: Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily: PHM/PNGase F
Family: Peptidylglycine alpha-hydroxylating monooxygenase, PHM

Phyre2
9 |
| d1zvfa1 |

### PDB 1zvf chain A domain 1

Region: 20 - 71
Aligned: 52
Modelled: 52
Confidence: 19.7%
Identity: 15%
Fold: Double-stranded beta-helix
Superfamily: RmlC-like cupins
Family: 3-hydroxyanthranilic acid dioxygenase-like

Phyre2
10 |
| d1yfua1 |

### PDB 1yfu chain A domain 1

Region: 20 - 75
Aligned: 53
Modelled: 56
Confidence: 17.8%
Identity: 19%
Fold: Double-stranded beta-helix
Superfamily: RmlC-like cupins
Family: 3-hydroxyanthranilic acid dioxygenase-like

Phyre2
11 |
| c1wqsA_ |

### PDB 1wqs chain A

Region: 31 - 78
Aligned: 48
Modelled: 48
Confidence: 17.6%
Identity: 21%
PDB header:hydrolase
Chain: A: PDB Molecule:3c-like protease;
PDBTitle: crystal structure of norovirus 3c-like protease

Phyre2
12 |
| d1g31a_ |

### PDB 1g31 chain A

Region: 19 - 43
Aligned: 22
Modelled: 25
Confidence: 15.1%
Identity: 36%
Fold: GroES-like
Superfamily: GroES-like
Family: GroES

Phyre2
13 |
| d2qfaa1 |

### PDB 2qfa chain A domain 1

Region: 19 - 40
Aligned: 22
Modelled: 22
Confidence: 14.1%
Identity: 27%
Fold: Inhibitor of apoptosis (IAP) repeat
Superfamily: Inhibitor of apoptosis (IAP) repeat
Family: Inhibitor of apoptosis (IAP) repeat

Phyre2
14 |
| c3jsbA_ |

### PDB 3jsb chain A

Region: 97 - 114
Aligned: 18
Modelled: 18
Confidence: 13.3%
Identity: 22%
PDB header:rna binding protein
Chain: A: PDB Molecule:rna-directed rna polymerase;
PDBTitle: crystal structure of the n-terminal domain of the lymphocytic2 choriomeningitis virus l protein

Phyre2
15 |
| c1hf9B_ |

### PDB 1hf9 chain B

Region: 93 - 106
Aligned: 14
Modelled: 14
Confidence: 11.0%
Identity: 21%
PDB header:atpase inhibitor
Chain: B: PDB Molecule:atpase inhibitor (mitochondrial);
PDBTitle: c-terminal coiled-coil domain from bovine if1

Phyre2
16 |
| c2quoA_ |

### PDB 2quo chain A

Region: 111 - 136
Aligned: 26
Modelled: 26
Confidence: 10.6%
Identity: 27%
PDB header:toxin
Chain: A: PDB Molecule:heat-labile enterotoxin b chain;
PDBTitle: crystal structure of c terminal fragment of clostridium2 perfringens enterotoxin

Phyre2
17 |
| d2raxa1 |

### PDB 2rax chain A domain 1

Region: 19 - 40
Aligned: 22
Modelled: 22
Confidence: 10.1%
Identity: 27%
Fold: Inhibitor of apoptosis (IAP) repeat
Superfamily: Inhibitor of apoptosis (IAP) repeat
Family: Inhibitor of apoptosis (IAP) repeat

Phyre2
18 |
| d1m4ma_ |

### PDB 1m4m chain A

Region: 19 - 40
Aligned: 22
Modelled: 22
Confidence: 9.6%
Identity: 27%
Fold: Inhibitor of apoptosis (IAP) repeat
Superfamily: Inhibitor of apoptosis (IAP) repeat
Family: Inhibitor of apoptosis (IAP) repeat

Phyre2
19 |
| c2oa9B_ |

### PDB 2oa9 chain B

Region: 36 - 56
Aligned: 21
Modelled: 21
Confidence: 9.5%
Identity: 10%
PDB header:hydrolase
Chain: B: PDB Molecule:r.mvai;
PDBTitle: restriction endonuclease mvai in the absence of dna

Phyre2
20 |
| c2w3zA_ |

### PDB 2w3z chain A

Region: 90 - 115
Aligned: 26
Modelled: 26
Confidence: 8.7%
Identity: 23%
PDB header:hydrolase
Chain: A: PDB Molecule:putative deacetylase;
PDBTitle: structure of a streptococcus mutans ce4 esterase

Phyre2
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53 |

Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1p6va_ |
|  | 100.0 | 50 | Fold:Small protein B (SmpB) Superfamily:Small protein B (SmpB) Family:Small protein B (SmpB)
2 | c1p6vC_ |
|  | 100.0 | 50 | PDB header:rna binding protein/rna Chain: C: PDB Molecule:ssra-binding protein; PDBTitle: crystal structure of the trna domain of transfer-messenger2 rna in complex with smpb
3 | c1j1hA_ |
|  | 100.0 | 46 | PDB header:rna binding protein Chain: A: PDB Molecule:small protein b; PDBTitle: solution structure of a tmrna-binding protein, smpb, from2 thermus thermophilus
4 | d1wjxa_ |
|  | 100.0 | 51 | Fold:Small protein B (SmpB) Superfamily:Small protein B (SmpB) Family:Small protein B (SmpB)
5 | d2ipqx1 |
|  | 37.1 | 28 | Fold:DNA/RNA-binding 3-helical bundle Superfamily:"Winged helix" DNA-binding domain Family:STY4665 C-terminal domain-like
6 | c2qnkA_ |
|  | 31.9 | 33 | PDB header:oxidoreductase Chain: A: PDB Molecule:3-hydroxyanthranilate 3,4-dioxygenase; PDBTitle: crystal structure of human 3-hydroxyanthranilate 3,4-dioxygenase
7 | c2agaA_ |
|  | 24.9 | 14 | PDB header:transcription Chain: A: PDB Molecule:machado-joseph disease protein 1; PDBTitle: de-ubiquitinating function of ataxin-3: insights from the2 solution structure of the josephin domain
8 | d1sdwa2 |
|  | 21.0 | 15 | Fold:Nucleoplasmin-like/VP (viral coat and capsid proteins) Superfamily:PHM/PNGase F Family:Peptidylglycine alpha-hydroxylating monooxygenase, PHM
9 | d1zvfa1 |
|  | 19.7 | 15 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like
10 | d1yfua1 |
|  | 17.8 | 19 | Fold:Double-stranded beta-helix Superfamily:RmlC-like cupins Family:3-hydroxyanthranilic acid dioxygenase-like
11 | c1wqsA_ |
|  | 17.6 | 21 | PDB header:hydrolase Chain: A: PDB Molecule:3c-like protease; PDBTitle: crystal structure of norovirus 3c-like protease
12 | d1g31a_ |
|  | 15.1 | 36 | Fold:GroES-like Superfamily:GroES-like Family:GroES
13 | d2qfaa1 |
|  | 14.1 | 27 | Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat
14 | c3jsbA_ |
|  | 13.3 | 22 | PDB header:rna binding protein Chain: A: PDB Molecule:rna-directed rna polymerase; PDBTitle: crystal structure of the n-terminal domain of the lymphocytic2 choriomeningitis virus l protein
15 | c1hf9B_ |
|  | 11.0 | 21 | PDB header:atpase inhibitor Chain: B: PDB Molecule:atpase inhibitor (mitochondrial); PDBTitle: c-terminal coiled-coil domain from bovine if1
16 | c2quoA_ |
|  | 10.6 | 27 | PDB header:toxin Chain: A: PDB Molecule:heat-labile enterotoxin b chain; PDBTitle: crystal structure of c terminal fragment of clostridium2 perfringens enterotoxin
17 | d2raxa1 |
|  | 10.1 | 27 | Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat
18 | d1m4ma_ |
|  | 9.6 | 27 | Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat
19 | c2oa9B_ |
|  | 9.5 | 10 | PDB header:hydrolase Chain: B: PDB Molecule:r.mvai; PDBTitle: restriction endonuclease mvai in the absence of dna
20 | c2w3zA_ |
|  | 8.7 | 23 | PDB header:hydrolase Chain: A: PDB Molecule:putative deacetylase; PDBTitle: structure of a streptococcus mutans ce4 esterase
21 | d1d1na_ |
| not modelled | 8.3 | 20 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors
22 | d2c1ia1 |
| not modelled | 8.1 | 24 | Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase
23 | d2nlya1 |
| not modelled | 8.0 | 19 | Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:Divergent polysaccharide deacetylase
24 | d2cc0a1 |
| not modelled | 7.9 | 15 | Fold:7-stranded beta/alpha barrel Superfamily:Glycoside hydrolase/deacetylase Family:NodB-like polysaccharide deacetylase
25 | c3mjdA_ |
| not modelled | 7.9 | 22 | PDB header:transferase Chain: A: PDB Molecule:orotate phosphoribosyltransferase; PDBTitle: 1.9 angstrom crystal structure of orotate2 phosphoribosyltransferase (pyre) francisella tularensis.
26 | d1jd5a_ |
| not modelled | 7.3 | 26 | Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat
27 | c2ylaA_ |
| not modelled | 7.3 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:beta-n-acetylhexosaminidase; PDBTitle: inhibition of the pneumococcal virulence factor strh and2 molecular insights into n-glycan recognition and3 hydrolysis
28 | c3rpmA_ |
| not modelled | 7.2 | 14 | PDB header:hydrolase Chain: A: PDB Molecule:beta-n-acetyl-hexosaminidase; PDBTitle: crystal structure of the first gh20 domain of a novel beta-n-acetyl-2 hexosaminidase strh from streptococcus pneumoniae r6
29 | c2z59A_ |
| not modelled | 7.0 | 29 | PDB header:protein transport Chain: A: PDB Molecule:protein adrm1; PDBTitle: complex structures of mouse rpn13 (22-130aa) and ubiquitin
30 | c2r2yA_ |
| not modelled | 7.0 | 29 | PDB header:protein binding Chain: A: PDB Molecule:protein adrm1; PDBTitle: crystal structure of the proteasomal rpn13 pru-domain
31 | d8ohma2 |
| not modelled | 6.9 | 24 | Fold:P-loop containing nucleoside triphosphate hydrolases Superfamily:P-loop containing nucleoside triphosphate hydrolases Family:RNA helicase
32 | d2ieca1 |
| not modelled | 6.8 | 71 | Fold:MK0786-like Superfamily:MK0786-like Family:MK0786-like
33 | d1kk1a1 |
| not modelled | 6.6 | 36 | Fold:Reductase/isomerase/elongation factor common domain Superfamily:Translation proteins Family:Elongation factors
34 | d2i52a1 |
| not modelled | 6.5 | 71 | Fold:MK0786-like Superfamily:MK0786-like Family:MK0786-like
35 | c2ogfD_ |
| not modelled | 6.1 | 57 | PDB header:structural genomics, unknown function Chain: D: PDB Molecule:hypothetical protein mj0408; PDBTitle: crystal structure of protein mj0408 from methanococcus jannaschii,2 pfam duf372
36 | d1jaka1 |
| not modelled | 6.1 | 15 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-N-acetylhexosaminidase catalytic domain
37 | c2crvA_ |
| not modelled | 6.1 | 29 | PDB header:translation Chain: A: PDB Molecule:translation initiation factor if-2; PDBTitle: solution structure of c-terminal domain of mitochondrial2 translational initiationfactor 2
38 | d1xb0b_ |
| not modelled | 6.0 | 27 | Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat
39 | d1yhta1 |
| not modelled | 5.9 | 20 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-N-acetylhexosaminidase catalytic domain
40 | c2vm5A_ |
| not modelled | 5.9 | 27 | PDB header:apoptosis Chain: A: PDB Molecule:baculoviral iap repeat-containing protein 1; PDBTitle: human bir2 domain of baculoviral inhibitor of apoptosis2 repeat-containing 1 (birc1)
41 | d2gjxa1 |
| not modelled | 5.8 | 15 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:beta-N-acetylhexosaminidase catalytic domain
42 | d1mkya3 |
| not modelled | 5.8 | 9 | Fold:Alpha-lytic protease prodomain-like Superfamily:Probable GTPase Der, C-terminal domain Family:Probable GTPase Der, C-terminal domain
43 | c1oy7C_ |
| not modelled | 5.7 | 23 | PDB header:apoptosis/peptide Chain: C: PDB Molecule:baculoviral iap repeat-containing protein 7; PDBTitle: structure and function analysis of peptide antagonists of melanoma2 inhibitor of apoptosis (ml-iap)
44 | c2elvA_ |
| not modelled | 5.7 | 21 | PDB header:transcription Chain: A: PDB Molecule:zinc finger protein 406; PDBTitle: solution structure of the 6th c2h2 zinc finger of human2 zinc finger protein 406
45 | d1im3d_ |
| not modelled | 5.7 | 28 | Fold:Immunoglobulin-like beta-sandwich Superfamily:E set domains Family:Cytomegalovirus protein US2
46 | d1gtda_ |
| not modelled | 5.6 | 23 | Fold:PurS-like Superfamily:PurS-like Family:PurS subunit of FGAM synthetase
47 | c2odiA_ |
| not modelled | 5.6 | 19 | PDB header:hydrolase/dna Chain: A: PDB Molecule:r.bcni; PDBTitle: restriction endonuclease bcni-cognate dna substrate complex
48 | d2i3ha1 |
| not modelled | 5.5 | 23 | Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat
49 | d3d9ta1 |
| not modelled | 5.5 | 26 | Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat
50 | d1q4qa_ |
| not modelled | 5.5 | 27 | Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat
51 | d1g73d_ |
| not modelled | 5.3 | 27 | Fold:Inhibitor of apoptosis (IAP) repeat Superfamily:Inhibitor of apoptosis (IAP) repeat Family:Inhibitor of apoptosis (IAP) repeat
52 | c3i7fA_ |
| not modelled | 5.3 | 25 | PDB header:ligase Chain: A: PDB Molecule:aspartyl-trna synthetase; PDBTitle: aspartyl trna synthetase from entamoeba histolytica
53 | d1j5ua_ |
| not modelled | 5.1 | 16 | Fold:MTH1598-like Superfamily:MTH1598-like Family:MTH1598-like

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0