275 c2aiqA_ Probab=97.58   E-value=0.0052  Score=36.76  Aligned_columns=179  Identities=18%

Q ss_pred             CCEEEEEEEEECCCCCCCCCCHHHCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEHHHCCCCCEEEEEECCCC-----
Q ss_conf             942999998612566665420000144446666665423551289993798399985334478867999988998-----
Q batch____        51 PAVVSVRVEGTASQGQKIPEEFKKFFGDDLPDQPAQPFEGLGSGVIINASKGYVLTNNHVINQAQKISIQLNDGR-----  125 (455)
Q Consensus        51 psvV~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GsG~ii~~~~G~IlT~~Hvv~~~~~i~V~~~dg~-----  125 (455)
                      |-+|.|.....                             .++|.+|+.+  ||||++|++.+.....+......     
T Consensus        13 Pw~v~i~~~~~-----------------------------~C~GsLIs~~--~VLTaAhCv~~~~~~~~~~~~~~~~~~~   61 (231)
T c2aiqA_          13 RFLALVYANGS-----------------------------LCGGTLINQE--WVLTARHCDRGNMRIYLGMHNLKVLNKD   61 (231)
T ss_dssp             TTEEEEEETTE-----------------------------EEEEEECSSS--EEEECGGGCCSSCEEEESCSCTTSCCTT
T ss_pred             CCEEEEEECCE-----------------------------EEEEEEECCC--EEEECHHHCCCCCCEEEEEEECCCCCCC
T ss_conf             87899983892-----------------------------7799995199--7991305216885202554210012421


Q ss_pred             ---EEEEEEEEECCCC-------CEEEEE----ECCCCCCCEEECCCCCCCCCCCEEEEEECCCCCC-------CEEEEE
Q ss_conf             ---8999999973878-------879999----5487787324214778877887799960678877-------414677
Q batch____       126 ---EFDAKLIGSDDQS-------DIALLQ----IQNPSKLTQIAIADSDKLRVGDFAVAVGNPFGLG-------QTATSG  184 (455)
Q Consensus       126 ---~~~a~v~~~d~~~-------DlAllk----i~~~~~~~~~~~~~s~~~~~G~~v~aiG~p~g~~-------~~~~~G  184 (455)
                         .+..+.+...+..       |+++++    +.......+..+......................       .....-
T Consensus        62 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (231)
T c2aiqA_          62 ALRRFPKEKYFCLNTRNDTIWDKDIMLIRLNRPVRNSAHIAPLSLPSNPPSVGSVCRIMGWGTITSPNATLPDVPHCANI  141 (231)
T ss_dssp             CEEECEEEEECCSSCCSSSTTTTCCEEEEESSCCCCBTTBCCCCCCSSCCCTTCEEEEEESSCSSSSSCCCCSSCEEEEE
T ss_pred             EEEEEEEEEEEECCCCCCCCCCCCHHEEECCCEEEEECCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEE
T ss_conf             01327898999658666775443021000232011311233322566675420135667764210156513441359999


Q ss_pred             EEEEEECCCCCCCCCCEEEEEEEEEC------CCCCCCEEECCCCCEEEEEEEEECCCCCCEEEEEEEEHHHHHHHHHHH
Q ss_conf             98542034366787420699972315------887765358789828999722214788701122254499999999999
Q batch____       185 IVSALGRSGLNLEGLENFIQTDASIN------RGNSGGALLNLNGELIGINTAILAPGGGSVGIGFAIPSNMARTLAQQL  258 (455)
Q Consensus       185 ~vs~~~r~~~~~~~~~~~i~~da~i~------~G~SGgpl~n~~G~vvGI~~~~~~~~~~~~~~~faiP~~~~~~~~~~l  258 (455)
                      .+......................-.      .|.||+||+. ++.++||.+......+.....+...-+...+.++++.
T Consensus       142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~pl~~-~~~l~Gi~S~g~~~c~~~~~p~vyt~V~~y~~WI~~~  220 (231)
T c2aiqA_         142 NILDYAVCQAAYKGLAATTLCAGILEGGKDTCKGDSGGPLIC-NGQFQGILSVGGNPCAQPRKPGIYTKVFDYTDWIQSI  220 (231)
T ss_dssp             EEECHHHHHHHCTTCCSSEEEEECTTCSCBCCTTCTTCEEEE-TTEEEEEEEEECSSTTCTTCCEEEEEGGGGHHHHHHH
T ss_pred             EEECHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCEEEE-CCEEEEEEEECCCCCCCCCCCEEEEEHHHHHHHHHHH
T ss_conf             984346765430677874037750675400100345660668-8999999997586888988977997848867789987


Q ss_pred             HHC
Q ss_conf             851
Q batch____       259 IDF  261 (455)
Q Consensus       259 ~~~  261 (455)
                      +.+
T Consensus       221 i~~  223 (231)
T c2aiqA_         221 ISG  223 (231)
T ss_dssp             HHT
T ss_pred             HCC
T ss_conf             243