Phyre 2 alignment of P03960 with c1toaA_

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Job Description | P03960
Confidence | 23.84% | Date | Thu Jan 5 10:58:08 GMT 2012
Rank | 375 | Aligned Residues | 53
% Identity | 13% | Template | c1toaA_
PDB info | PDB header:binding protein | Chain: A: PDB Molecule:protein (periplasmic binding protein troa); | PDBTitle: periplasmic zinc binding protein troa from treponema pallidum
Resolution | 1.80 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 435 | . | . | . | . | 440 | . | . | . | . | . | . | . |  |  |  | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 |  | . | . | . | . | . | . | . | . | . | 480 | . | . | . | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | E | G | S | R | V | L | G | V | I | A | L | K | D | . | . | . | I | V | K | G | G | I | K | E | R | F | A | Q | L | R | K | M | G | I | K | T | V | M | I | . | T | G | D | N | R | L | T | A | A | A | I | A | A | E | A | G | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | Y | G | F | E | V | K | G | L | Q | G | V | S | T | A | S | E | A | S | A | H | D | M | Q | E | L | A | A | F | I | A | Q | R | K | L | P | A | I | F | I | E | S | S | I | P | H | K | N | V | E | A | L | R | D | A | V | Q | A
Template Known Secondary structure |  |  | T |  |  |  |  |  |  |  |  | S | S |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T |  | S |  |  |  |  |  | T | T | S |  | T |  |  |  |  |  |  |  |  |  |  |  | T
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 209 | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240 | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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