Phyre 2 alignment of P03960 with c3p42D_

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Job Description | P03960
Confidence | 23.34% | Date | Thu Jan 5 10:58:08 GMT 2012
Rank | 381 | Aligned Residues | 29
% Identity | 10% | Template | c3p42D_
PDB info | PDB header:unknown function | Chain: D: PDB Molecule:predicted protein; | PDBTitle: structure of gfcc (ymcb), protein encoded by the e. coli group 42 capsule operon
Resolution | 1.91 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 103 | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . |  |  |  |  |  |  |  | . | . | . | . | . | 130 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Query Sequence |  | T | A | F | A | R | K | L | R | E | P | K | Y | G | A | A | A | D | K | V | P | A | D | . | . | . | . | . | . | . | Q | L | R | K | G | D | I | V | L | V
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  | . | . | . | . | . | . | . |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | K | N | N | V | X | V | I | T | P | . | . | . | E | G | E | T | V | V | A | P | V | A | L | W | N | K | R | H | V | E | P | P | P | G | S | Q | L | W | L
Template Known Secondary structure |  | S | S |  |  |  |  |  |  | T | . | . | . | T | S |  |  |  |  |  |  |  | S |  | S | S |  |  |  |  |  |  |  | T | T |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 185 | . | . | . | . | 190 | . | . | . |  |  |  | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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