16/01/2012 04:08:41 : INFO  : Run start: Mon Jan 16 04:08:39 GMT 2012
16/01/2012 04:08:50 : INFO  : Initialised job
16/01/2012 04:08:53 : INFO  : Renaming log file 'phyre2_20120116_040838.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/48783db7db1c42dc/phyre_20120116_040838.log'
16/01/2012 04:08:55 : INFO  : Initialised job:
Sequence
>batch____
MSRKQLALFEPTLVVQALKEAVKKLNPQAQWRNPVMFIVWIGSLLTTCISIAMASGAMPG
NALFSAAISGWLWITVLFANFAEALAEGRSKAQANSLKGVKKTAFARKLREPKYGAAADK
VPADQLRKGDIVLVEAGDIIPCDGEVIEGGASVDESAITGESAPVIRESGGDFASVTGGT
RILSDWLVIECSVNPGETFLDRMIAMVEGAQRRKTPNEIALTILLIALTIVFLLATATLW
PFSAWGGNAVSVTVLVALLVCLIPTTIGGLLSAIGVAGMSRMLGANVIATSGRAVEAAGD
VDVLLLDKTGTITLGNRQASEFIPAQGVDEKTLADAAQLASLADETPEGRSIVILAKQRF
NLRERDVQSLHATFVPFTAQSRMSGINIDNRMIRKGSVDAIRRHVEANGGHFPTDVDQKV
DQVARQGATPLVVVEGSRVLGVIALKDIVKGGIKERFAQLRKMGIKTVMITGDNRLTAAA
IAAEAGVDDFLAEATPEAKLALIRQYQAEGRLVAMTGDGTNDAPALAQADVAVAMNSGTQ
AAKEAGNMVDLDSNPTKLIEVVHIGKQMLMTRGSLTTFSIANDVAKYFAIIPAAFAATYP
QLNALNIMCLHSPDSAILSAVIFNALIIVFLIPLALKGVSYKPLTASAMLRRNLWIYGLG
GLLVPFIGIKVIDLLLTVCGLV

16/01/2012 04:08:57 : INFO  : Checked sequence
16/01/2012 04:09:02 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 04:09:04 : INFO  : PSI-BLAST 3 iterations
16/01/2012 04:13:04 : INFO  : PSI-BLAST 5 iterations
16/01/2012 04:18:11 : INFO  : Finished PSI-BLAST
16/01/2012 04:18:15 : INFO  : Running Buildali to generate a3m file
16/01/2012 05:30:24 : INFO  : Converting to HMM
16/01/2012 05:30:53 : INFO  : Calibrating HMM
16/01/2012 05:31:19 : INFO  : Searching HMM database
16/01/2012 05:42:56 : INFO  : Finished buildali
16/01/2012 05:42:58 : INFO  : Predicting secondary structure
16/01/2012 05:43:10 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 05:43:13 : INFO  : Predicting Disordered regions
16/01/2012 05:43:19 : INFO  : Predicted Disorder (Disopred)
16/01/2012 05:43:22 : INFO  : Running memsat_svm check
16/01/2012 05:48:49 : INFO  : Running memsat_svm full
16/01/2012 05:56:09 : INFO  : Predicted Transmembrane (memsat_svm) ID '48783db7db1c42dc'
16/01/2012 05:56:12 : INFO  : Initialising fold library search
16/01/2012 05:56:17 : INFO  : Initialised search input
16/01/2012 05:56:21 : INFO  : Building Ensemble models
16/01/2012 05:56:27 : INFO  : Building hh.c2zxeA_.model.1.pdb
16/01/2012 05:56:52 : INFO  : Building hh.c3ixzA_.model.2.pdb
16/01/2012 05:57:19 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/48783db7db1c42dc/hh.c3ixzA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/48783db7db1c42dc/c3ixzA_.2.pdb
16/01/2012 05:57:25 : INFO  : Building hh.c1mhsA_.model.3.pdb
16/01/2012 05:57:43 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/48783db7db1c42dc/hh.c1mhsA_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/48783db7db1c42dc/c1mhsA_.3.pdb
16/01/2012 05:57:49 : INFO  : Building hh.c3b9bA_.model.4.pdb
16/01/2012 05:58:09 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/48783db7db1c42dc/hh.c3b9bA_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/48783db7db1c42dc/c3b9bA_.4.pdb
16/01/2012 05:58:15 : INFO  : Building hh.c3b8eC_.model.5.pdb
16/01/2012 05:58:35 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/48783db7db1c42dc/hh.c3b8eC_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/48783db7db1c42dc/c3b8eC_.5.pdb
16/01/2012 05:58:41 : INFO  : Building hh.c3rfuC_.model.6.pdb
16/01/2012 05:59:02 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/48783db7db1c42dc/hh.c3rfuC_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/48783db7db1c42dc/c3rfuC_.6.pdb
16/01/2012 05:59:08 : INFO  : Building c2zxeA_.1.pdb
16/01/2012 05:59:34 : INFO  : Building c3ixzA_.2.pdb
16/01/2012 06:00:06 : INFO  : Building c1mhsA_.3.pdb
16/01/2012 06:00:29 : INFO  : Building c3b9bA_.4.pdb
16/01/2012 06:00:51 : INFO  : Building c3b8eC_.5.pdb
16/01/2012 06:01:15 : INFO  : Building c3rfuC_.6.pdb
16/01/2012 06:01:44 : INFO  : Building c3b8cB_.7.pdb
16/01/2012 06:02:10 : INFO  : Building c3j09A_.8.pdb
16/01/2012 06:02:35 : INFO  : Building c3j08A_.9.pdb
16/01/2012 06:02:59 : INFO  : Building c2b8eB_.10.pdb
16/01/2012 06:03:25 : INFO  : Building c2iyeC_.11.pdb
16/01/2012 06:03:52 : INFO  : Building d1wpga2.12.pdb
16/01/2012 06:04:24 : INFO  : Building d2b8ea1.13.pdb
16/01/2012 06:04:57 : INFO  : Building c3p96A_.14.pdb
16/01/2012 06:05:27 : INFO  : Building d1wpga4.15.pdb
16/01/2012 06:06:04 : INFO  : Building d1y8aa1.16.pdb
16/01/2012 06:06:31 : INFO  : Building c3n28A_.17.pdb
16/01/2012 06:06:59 : INFO  : Building c2hc8A_.18.pdb
16/01/2012 06:07:26 : INFO  : Building c2kijA_.19.pdb
16/01/2012 06:07:53 : INFO  : Building d1wpga1.20.pdb
16/01/2012 06:11:46 : INFO  : Finished HH model building
16/01/2012 06:11:49 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 06:13:20 : INFO  : html domain output complete ID '48783db7db1c42dc'
16/01/2012 10:06:28 : INFO  : Run end  : Mon Jan 16 10:06:26 GMT 2012
