HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/485ea114945554de/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/485ea114945554de/query.hhm DATE Thu Jan 5 15:39:46 2012 LENG 91 match states, 91 columns in multiple alignment FILT 104 out of 210 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 7.0 EVD 0.3857 -2.0754 SEQ >ss_pred CCCCCCCCCCCCCCCEEEECCCCCCCCCCEEECCCCCEEEECCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHHCC >ss_conf 9855002688988770870671788972337057896586057787738347999999986599899999983989899999999863139 >Consensus mxxxxxxCPxCgxxxxvxKxGxxxxgkQRyxCkxCxxtFxxxxxxxxxxxxxxxxixxxxxegxsirxiArxxxvsxxTVxrxlkxxxxxx >batch____ MASISIRCPSCSATEGVVRNGKSTAGHQRYLCSPCRKTWQLQFTYTASQPGKHQKIIDMAMNGVGCRASARIMGVGLNTVLRHLKNSGRSR >UniRef50_Q5ZT03(42-138:399) Transposase (IS652) n=29 Tax=Gammaproteobacteria RepID=Q5ZT03_LEGPH E=0.001 s/c=0.46 id=24% cov=86% -----VRCIHCGNKKLRVKDSFIRRirhesiGLRRsylclkahkYYCPSCGRYFNQRFpgigKYQRASESLRKQVFHYHSKGVSQKDLARDLKLGKSTVE R--------- >UniRef50_B2JXE0(59-145:358) Putative uncharacterized protein n=2 Tax=Burkholderiaceae RepID=B2JXE0_BURP8 E=2e-06 s/c=0.61 id=24% cov=90% -------CPRCRGT-RILKKGYARLRTgplPTYRCEQCGHCFSRLSGTPLSKRPVRQQAgelIALLPQEISCAEAARQLGVMEHTVLETVRLVRR-- >UniRef50_Q10ZK1(10-92:177) Insertion element protein n=1 Tax=Trichodesmium erythraeum IMS101 RepID=Q10ZK1_TRIEI E=4e-14 s/c=0.95 id=24% cov=90% -----IQCPDC-SCQHIPKNGHQP-GKQNYICVACSHQFIKPYHPQEYSDNVKRLFLRIYVNGMGIRRIAWVKGVTYPTIINLIKHTR--- >UniRef50_Q8PRR9(34-114:148) Conserved protein n=2 Tax=Archaea RepID=Q8PRR9_METMA E=1e-06 s/c=0.67 id=22% cov=80% ----------------VLKERYGKNNHALFKCKTCKKCFSETkgtiFFELNTPDEEVLRTIAMLPEKGSIRGVARATGHSKDTICRWLEIAG--- >UniRef50_D0U1S9(36-148:427) Transposase n=1 Tax=Enterococcus faecium RepID=D0U1S9_ENTFC E=2e-09 s/c=0.56 id=21% cov=93% ------ECAHCEAPNvgfSIYKNGtqtsrvtfpmagilptYLRIRKQRFMCKCCGKSFTARTPvverNCFISNYIKAQILTQSGETRSVKDIAKHTNVSE ASVQRVLTLEGES- >UniRef50_UPI0001C348D8(67-152:467) hypothetical protein PretD1_11772 n=1 Tax=Providencia rettgeri DSM 1131 RepID=UPI0001C348D8 E=6e-09 s/c=0.72 id=24% cov=93% MKNIEKACPSCYSTENI-KYGTTAIGTVRYQCKNCNNVYSL--KNLNKFDDVDNKLIESLLKNTKVSTIFKELKITPASFYRRLENI---- >UniRef50_D0SJK4(33-129:460) Predicted protein n=1 Tax=Acinetobacter junii SH205 RepID=D0SJK4_ACIJU E=3e-06 s/c=0.55 id=22% cov=87% ------KCPKCGS-DQLYKHGTKPviyrdiprhmkptvinVEVKRYRCKSCKATFLQEVTGIYPDTRMTERFVKKIQDiclDYTFSDTARMMGCDSKTI- RTITN----- >UniRef50_B4VTL4(20-107:124) Putative uncharacterized protein n=1 Tax=Microcoleus chthonoplastes PCC 7420 RepID=B4VTL4_9CYAN E=7e-06 s/c=0.59 id=18% cov=88% ------QCPYCQSTHS-----RRLKKERRYQCNECFTSYSVTvgTLFHKTHVDLEKWVLAIYLvlnppERISVRQLAKKIGVNKNTASYMIARIRQA- # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 3977 0 0 A 2 1491 * * 4270 * 3171 * 3341 3121 * * * * * * 3335 3604 3532 * * 2 0 * * * * * * 3977 0 0 S 3 * * * * * 3431 * * 3643 3837 * 3363 * * * 2060 1251 * * * 3 130 3538 * 1000 1000 * * 4397 1000 0 I 4 * * * 3178 * * * 1728 3801 1949 3745 4304 * * * * * 2925 * * 4 95 * 3977 * * * * 4853 0 0 S 5 3678 * 2722 3349 * * 4072 * 4145 3964 * 2095 3975 4429 * 4288 4305 * * 4435 5 0 * * * * * 0 5055 0 1000 I 6 * * * * * * * 1739 4741 3792 1847 * 5220 * * 4527 * 2226 * 5117 6 0 * * * * 0 * 5795 0 1000 R 7 5463 * * 2908 * * 2191 * 2857 * * 4083 * 3105 2851 2996 4856 6211 * * 7 0 * * * * * * 6589 0 0 C 8 * 0 * * * * * * * * * * * * * * * * * * 8 23 6010 * 1000 1000 * * 6815 1000 0 P 9 6329 * 5698 4496 * * 6305 4204 4117 * * * 481 * 4184 * 6531 5889 * * 9 19 6259 * 1000 1000 * * 6805 1000 0 S 10 5188 6501 4165 6382 3709 6456 1950 6546 2988 * 5700 3929 * 6607 4032 3672 * 5122 * 2766 10 0 * * * * * * 6841 0 0 C 11 * 46 * * 4990 * * * * * * * * * * * * * * * 11 162 6069 3449 2322 322 * * 6841 1000 0 S 12 4897 5059 4535 3762 * 1097 3900 * 4257 * * 3530 * 3539 5908 5279 * * * 5810 12 176 3792 4543 2418 299 0 * 6772 2936 3462 A 13 3983 6391 6031 6526 4321 4879 2947 * 3845 6450 6605 5388 * 2894 5095 1340 * * * 6498 13 283 5613 2662 1585 585 572 1611 6784 1000 2200 T 14 3245 5891 4375 5268 6153 5052 * 4754 4505 5139 * 4231 3679 * 4828 2465 2169 3901 * 6278 14 141 5914 3706 2585 263 137 3466 6848 1000 4517 E 15 5903 * 1909 2808 * * 2696 * 2939 * * 3959 * 3342 4953 5835 4702 6153 * 5359 15 298 6234 2528 1585 585 281 2498 6716 1000 3248 G 16 6394 5286 4744 5339 5478 4105 3579 5603 3297 4176 * 3484 5437 5753 2782 3013 3404 3969 * * 16 109 6016 4129 2807 222 400 2047 6749 1000 3876 V 17 * 4686 * 5629 4018 * * 1665 5984 3693 5823 * * * 5167 6766 5499 1505 * 4594 17 135 4624 4358 1215 813 1048 953 6776 2303 3077 V 18 6499 * 5832 * 6289 * 5618 2732 3239 3672 5848 5224 5043 4493 3886 6505 6299 1734 * 3435 18 61 5132 6255 3503 133 619 1519 6894 1432 3431 R 19 * 6160 6064 * * * * * 611 5300 6631 * * * 1937 * * * * 5674 19 49 4895 * 2634 253 778 1263 7154 2162 2320 N 20 4943 6865 5518 6228 4704 6534 2365 * 4030 6333 * 1527 5320 6794 4218 4923 6992 * 4158 3733 20 16 * 6534 * * * 0 7400 0 1523 G 21 5930 * 5350 * * 299 * * * * * * * 5900 4616 4501 4812 * * 6826 21 54 6539 5269 4000 93 1752 508 7335 1000 1796 K 22 * * * 6137 2772 * 3645 4160 1802 * * * 6084 4725 3449 4508 3644 * 5775 2939 22 78 * 4254 * * 395 2063 7302 0 2331 S 23 4359 * 3969 6047 * 3693 6785 3660 3076 3877 6071 4701 * 5252 3661 3399 2646 3985 * 4509 23 79 5154 5295 3174 169 289 2463 7349 1511 3280 T 24 3348 7090 7103 4879 * 5069 4291 5188 3025 6487 * 6673 3673 * 2047 3414 3477 5297 * 3805 24 201 4672 3465 3577 126 550 1658 7285 2128 2095 A 25 2954 * * 3745 * 4833 4207 3851 3511 2917 * 2770 * 4957 4409 3817 3725 5451 * 5484 25 138 4276 4665 3776 109 189 3024 7248 2419 3655 G 26 * * 5128 4579 * 870 * * 3054 * * 4079 * 4592 2935 6175 5896 * * * 26 123 3613 * 3174 169 338 2258 7246 3243 2672 H 27 5547 * 5698 6560 6525 * 3751 4316 1380 5153 * 5070 * * 2336 3896 3675 5512 * 7420 27 138 3451 * 2237 344 0 * 7444 3993 1000 Q 28 4914 * 4743 6164 * * 5954 6875 4932 * * * 4175 569 3667 6352 5391 6163 * * 28 43 5577 6875 3245 161 * * 7456 1574 0 R 29 * * * * 7555 6868 * * 4500 6275 4506 3893 * 4621 487 5777 5358 6439 * 6756 29 15 6566 * 3170 170 0 * 7581 1000 1000 Y 30 * * * * 1811 * 6331 * * 4208 * * * * 6546 * * * 3817 819 30 12 6894 * 3000 193 * * 7586 1000 0 L 31 * * 6180 5918 6390 * 6718 3515 2964 2704 6576 6737 * 3212 1700 * 6562 4748 6602 3550 31 0 * * * * * * 7586 0 0 C 32 * 27 * * * * * * * * * * * * * * * * * 5728 32 10 7185 * 1000 1000 * * 7586 1000 0 S 33 5543 * * 4933 6242 * 5353 6550 952 5317 * 4913 4410 5092 2932 4658 5173 4953 * 6028 33 21 6108 * 3170 170 * * 7586 1000 0 P 34 3816 5373 2677 3268 6610 4558 4801 5238 4752 5358 5921 3337 6903 4796 3685 3015 4039 5606 6369 6205 34 52 4815 * 1591 582 * * 7586 1978 0 C 35 5805 26 * * * * * * * * * * * * * * * * * * 35 36 5336 * 1221 809 * * 7586 1299 0 R 36 5635 5898 6336 5551 5231 1483 3812 * 3453 6735 * 3420 * 4418 2538 5379 * 6108 * 5483 36 0 * * * * * * 7586 0 0 K 37 4167 4652 6460 6855 5924 * 4276 * 1757 * * 6166 * 4243 1875 4673 4345 5458 * 3835 37 0 * * * * * * 7586 0 0 T 38 * 5367 6855 7565 5812 * 5022 7285 4363 * * 5208 6108 3408 3267 3025 1391 3690 * 4759 38 43 5078 * 1204 821 * * 7586 2278 0 W 39 6314 * * * 259 * * 6108 6718 * * * * * * 5393 5918 6568 4462 4991 39 113 4309 5313 1664 547 * * 7586 3235 0 Q 40 * 5346 6312 6102 4913 * * 3066 * 5086 4477 3621 * 3238 * 2128 2460 3149 * 6529 40 58 4674 * 1645 556 1019 981 7320 2572 1587 L 41 2922 * 3742 2486 5876 3403 6168 4156 6408 3050 6057 4097 * 4752 3992 5313 5507 3642 * * 41 93 4384 6090 1468 647 * 0 7344 2484 1000 Q 42 5550 * 3511 3666 * 6765 4988 5407 3409 4806 * 3576 4115 3833 3532 4586 1983 5305 * * 42 116 3927 6416 1896 452 * 0 7365 3603 1582 F 43 4011 * 4669 6878 3393 6404 5094 5026 3577 4523 * 4801 3102 6157 5919 3822 2887 4273 5707 2875 43 204 2921 * 1601 577 1506 626 7330 4462 2028 T 44 3690 6194 4661 3991 4824 3265 5556 5155 2731 4570 6863 5710 3009 6573 6255 3321 3324 5630 * 5091 44 107 3810 * 2000 415 1000 1000 7370 3237 1538 Y 45 4015 * 5022 5568 4256 3208 3915 * 6295 * * 2882 4260 6687 4832 5251 2949 * * 1953 45 41 5147 * 1161 855 * 0 7394 2004 1000 T 46 5851 4089 5287 4665 * 4856 4246 4283 3454 3843 6714 6048 3907 3262 2096 5365 4173 4837 6038 * 46 28 5714 * 1177 843 * 0 7394 1657 1000 A 47 2779 * 7105 5265 4504 3208 4649 5919 3830 3857 4270 3889 * 3434 3091 4525 4593 6046 5051 6179 47 12 * 6907 * * 0 * 7391 0 1000 S 48 5193 4286 5486 6276 6600 7096 4447 2410 2776 4711 * * 4351 4982 2724 4914 5079 5744 * 2868 48 12 6876 * 2000 415 0 * 7413 1000 1000 Q 49 4229 * 4048 * 5050 6113 4873 5289 2347 5224 * 4520 4193 4549 2960 2079 4525 * * 6809 49 54 5272 6494 1352 717 * * 7412 2230 0 P 50 4647 6163 3542 3236 6306 * 4923 5034 3505 2977 * 3899 3469 5878 3375 3204 4710 4841 * 6551 50 0 * * * * 0 * 7298 0 1000 G 51 6521 * 2486 2206 * 3608 4143 * 5058 5022 * 4120 5215 4927 3327 3485 4299 * 6713 5168 51 31 6096 7288 2322 322 * * 7310 1000 0 K 52 5679 * 5743 4136 4621 * * 3061 3132 2611 3510 * * 4434 * 5131 3308 2426 * 5871 52 17 6448 * 2000 415 * 0 7313 1000 1000 H 53 5741 * 4247 5056 6658 * 5601 4463 1705 * * 3898 4832 4896 3513 4504 3837 3936 3142 * 53 23 6007 * 2322 322 * 0 7313 1000 1000 Q 54 4816 6544 6526 2822 6194 6699 4871 4093 3301 3582 5652 4375 * 2587 3653 4765 3907 5091 5320 5122 54 50 5850 5931 1594 580 * 0 7313 1628 1000 K 55 3327 * 6151 3641 * 6604 5498 * 2234 2876 5255 4478 6655 2873 3269 4671 5699 5449 * 5490 55 65 4503 * 1541 608 939 1064 7247 2875 1602 I 56 2642 6236 * * 4336 * * 1236 * 3474 * 5727 * * * * 5542 2819 * 3633 56 46 4999 * 1831 476 * 0 7310 2081 1000 I 57 3288 5792 5638 * 4038 6454 * 2331 6163 2240 4527 * 7086 7237 4371 4772 4241 2930 * 4775 57 0 * * * * 0 * 7310 0 1000 D 58 3985 * 3739 3116 * 6531 5098 6136 2446 3194 4968 5605 * 3054 3446 4506 4328 5590 * 5625 58 25 5863 * 0 * * * 7307 1620 0 M 59 4053 6014 6134 3645 5469 * 4185 6392 5181 1756 2021 * * 6548 6283 4489 4913 7117 5971 4438 59 14 6681 * 2000 415 * * 7297 1000 0 A 60 3230 6424 * * 4137 * 6726 4458 6283 1513 3413 * * * 4707 4753 5087 3794 * 2878 60 14 6689 * 2000 415 * * 7297 1000 0 M 61 3944 5625 6123 5590 3728 6548 6369 3934 4008 2611 4534 6452 5004 5514 4348 4246 3248 2600 * 6582 61 23 5984 * 1145 868 * * 7297 1621 0 N 62 * 6492 3361 1460 * 4764 5361 * 3606 * * 2446 * 4351 5038 3519 5227 * * 6959 62 20 6172 * 1585 585 * * 7297 1000 0 G 63 * 6779 4794 4062 * 1148 6190 6134 2847 * * 2971 6998 4923 3981 6513 5647 6123 * * 63 0 * * * * * * 7297 0 0 V 64 5557 4494 * 5060 5241 4359 6555 3970 6444 2774 3045 4247 4971 6582 4855 3435 4149 3211 * 3479 64 49 4917 * 1792 492 * * 7297 2198 0 G 65 5313 * * * * 1748 * * 5000 * * * 4622 * * 981 3340 * * * 65 0 * * * * * * 7297 0 0 C 66 5971 5519 * 6161 2938 6774 * 1792 5599 2960 3571 * * 4205 5567 5984 5286 2627 * 6952 66 0 * * * * * * 7297 0 0 R 67 5274 * 5971 5784 * * 5063 6283 2572 6779 5521 4854 6831 5378 1127 3537 3818 5984 * * 67 32 5521 * 1000 1000 * * 7297 1000 0 A 68 2703 * 2201 3529 6482 3822 4650 * 3582 4820 * * 6236 4005 3960 3513 4271 6540 * 6420 68 22 6015 * 1000 1000 * * 7297 1000 0 S 69 3843 6420 5984 * * * * 988 * 3434 3858 * 5859 * * 4807 2959 4174 * * 69 0 * * * * * * 7297 0 0 A 70 611 4664 * 4117 6015 4033 * * 6083 * * * * * * 2824 * 5984 * * 70 0 * * * * * * 7297 0 0 R 71 5282 6607 5359 4829 * 6513 6042 * 1901 * * 5724 * 3951 1078 * 5025 6530 6392 * 71 0 * * * * * * 7297 0 0 I 72 5543 * 5567 5118 6492 * 4656 2505 4083 3648 5019 4738 * 3428 3254 4606 4751 2193 * * 72 23 5984 * 1000 1000 * * 7297 1000 0 M 73 5448 4679 * 5560 3366 5994 4248 4397 4921 1344 4671 6134 * * * 6299 2997 5014 * 4192 73 0 * * * * * * 7297 0 0 G 74 5344 * 4478 4143 4892 1339 4042 * 2978 * * 2822 * 5518 4308 4525 * * * * 74 0 * * * * * * 7297 0 0 V 75 5637 4981 * * * * 4165 1674 4753 3753 * * * * 5994 * 5434 1221 * * 75 0 * * * * * * 7297 0 0 G 76 4097 * 5309 * * 4344 3603 * 6312 * 6251 3720 5778 4769 * 792 4297 * * * 76 0 * * * * * * 7297 0 0 L 77 5616 * 4971 5368 * * 4114 4242 3100 3848 * 5385 2257 * 2901 5151 3557 4814 6000 3389 77 0 * * * * * * 7374 0 0 N 78 3815 5524 3634 4774 * 3982 5422 4733 3892 5206 * 2507 4372 5467 4365 3404 2605 5857 * * 78 0 * * * * * * 7374 0 0 T 79 5589 * 6276 * 5949 * * * 5501 * * * 6134 5521 * 3496 316 * * * 79 12 6963 * 1000 1000 * * 7367 1000 0 V 80 4219 * * * 4534 * * 2322 * 3451 * * * * * 6319 5577 790 * * 80 21 * 6102 * * * * 7291 0 0 L 81 6371 6198 6581 5479 3918 6316 4584 3651 * 2543 3354 5924 * 4171 6433 2816 3740 6383 4734 3035 81 0 * * * * 0 * 7249 0 1000 R 82 4706 * 5482 4381 5881 * 5073 * 3611 * * 4463 * 6566 720 3711 6660 * * 6224 82 0 * * * * * * 7274 0 0 H 83 4761 * * 6457 5832 * 4473 4230 3721 3493 4109 * * 6478 3214 * 2838 3477 2311 3985 83 0 * * * * * * 7055 0 0 L 84 4771 * * * 3206 * * 1961 * 1170 5033 * * * * * * 3021 * * 84 0 * * * * * * 7052 0 0 K 85 5600 * 4115 3917 * 5807 * * 920 5030 * 6871 * * 2589 5650 3883 5948 * * 85 0 * * * * * * 6752 0 0 N 86 3807 * 3371 4287 * * 5417 4443 1720 4364 * 2760 * 3905 3953 4160 * * * 5366 86 46 5000 * 0 * * * 6542 1000 0 S 87 3088 5389 * 5070 4248 * * 1862 5162 3309 5156 5510 * * * 2819 3533 3860 * 5306 87 0 * * * * * * 6250 0 0 G 88 4105 * * * * 1194 * * 5032 * * 4808 * * 1937 3287 4888 * * 4600 88 0 * * * * * * 6094 0 0 R 89 3405 * * 2595 * * * * 2641 * * * * 2449 1766 3285 * * * * 89 0 * * * * * * 5333 0 0 S 90 1510 * * * * 4061 * * 3810 * * * * * * 1162 3818 * * * 90 0 * * * * * * 4797 0 0 R 91 * * * * * * * * 737 * * * * * 1322 * * * * * 91 0 * * 0 * * * 3361 0 0 //