BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (162 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AFW1 Transcriptional activator rfaH n=162 Tax=Enterob... 338 4e-92 UniRef50_D2C1D2 NusG antitermination factor n=5 Tax=Gammaproteob... 249 2e-65 UniRef50_Q7MMR1 Transcription antiterminator n=58 Tax=Vibrionale... 154 1e-36 UniRef50_C8QDS8 Transcriptional acivator RfaH n=2 Tax=Pantoea sp... 150 2e-35 UniRef50_A0KGQ9 Transcriptional activator RfaH n=3 Tax=Aeromonad... 145 3e-34 UniRef50_C7RAP1 Transcriptional acivator RfaH n=1 Tax=Kangiella ... 136 3e-31 UniRef50_A0XZ39 Transcriptional activator RfaH n=2 Tax=Alteromon... 133 2e-30 UniRef50_Q1YPV4 Transcriptional activator RfaH n=1 Tax=gamma pro... 127 1e-28 UniRef50_UPI0000E0F5F6 transcriptional activator RfaH n=1 Tax=Gl... 125 4e-28 UniRef50_A1T084 NusG antitermination factor n=1 Tax=Psychromonas... 124 1e-27 UniRef50_A6FES1 Putative transcriptional activator RfaH n=1 Tax=... 118 7e-26 UniRef50_Q3J8A9 Transcriptional activator RfaH n=1 Tax=Nitrosoco... 113 2e-24 UniRef50_Q4K6G2 Transcriptional activator RfaH n=2 Tax=Pseudomon... 112 5e-24 UniRef50_A6F1J5 Transcriptional activator RfaH n=2 Tax=Marinobac... 105 6e-22 UniRef50_Q82X31 Putative transcriptional activator n=1 Tax=Nitro... 104 1e-21 UniRef50_A7FC44 Transcriptional activator n=1 Tax=Yersinia pseud... 103 2e-21 UniRef50_Q1QVL5 Transcription antitermination protein nusG n=1 T... 103 2e-21 UniRef50_Q0ACI7 Transcription antitermination protein nusG n=1 T... 100 1e-20 UniRef50_Q5QWY1 Transcription antiterminator RfaH n=2 Tax=Idioma... 98 8e-20 UniRef50_Q48H23 Transcriptional activator RfaH n=7 Tax=Pseudomon... 97 2e-19 UniRef50_C1DDG1 RfaH n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 96 4e-19 UniRef50_B1KMD8 Transcriptional acivator RfaH n=21 Tax=Shewanell... 94 2e-18 UniRef50_A9ND88 Transcriptional activator RfaH n=6 Tax=Coxiella ... 91 2e-17 UniRef50_A1WZB7 Transcription antitermination protein nusG n=1 T... 89 3e-17 UniRef50_Q3KCF2 Transcriptional activator RfaH n=1 Tax=Pseudomon... 89 7e-17 UniRef50_A6GM36 NusG antitermination factor n=1 Tax=Limnobacter ... 87 2e-16 UniRef50_B8KUX9 Transcription termination factor nusG domain pro... 82 6e-15 UniRef50_A4WZX9 Transcription antitermination protein nusG n=1 T... 77 2e-13 UniRef50_Q2CAE9 Transcriptional antitermination protein, putativ... 75 5e-13 UniRef50_C9Y5P4 Transcriptional activator rfaH n=3 Tax=Enterobac... 74 1e-12 UniRef50_A3V684 Transcriptional activator RfaH n=1 Tax=Loktanell... 73 4e-12 UniRef50_B7UF78 Similar to transcriptional activator n=1 Tax=Yer... 72 6e-12 UniRef50_A6FV14 Transcription antitermination protein nusG n=2 T... 70 2e-11 UniRef50_B2CBC8 Transcription antiterminator n=2 Tax=Enterobacte... 69 4e-11 UniRef50_A4EGG1 Transcriptional antitermination protein, putativ... 69 7e-11 UniRef50_Q0F316 Transcriptional activator RfaH n=1 Tax=Mariprofu... 67 2e-10 UniRef50_Q0FE68 Transcription antitermination protein nusG n=1 T... 66 4e-10 UniRef50_B1I6V9 Transcription antitermination protein nusG n=1 T... 65 8e-10 UniRef50_B3DWJ1 Transcriptional activator RfaH, NusG family n=1 ... 64 1e-09 UniRef50_Q2WBC3 Transcription antitermination protein nusG n=1 T... 64 2e-09 UniRef50_A3WUF1 Transcriptional antitermination protein, putativ... 63 4e-09 UniRef50_C3M8G1 Transcriptional activator affecting biosynthesis... 62 5e-09 UniRef50_Q1NMQ2 NGN n=3 Tax=delta proteobacterium MLMS-1 RepID=Q... 62 7e-09 UniRef50_Q48MX6 Transcriptional activator RfaH n=1 Tax=Pseudomon... 61 1e-08 UniRef50_Q04WD1 Transcription antiterminator n=4 Tax=Leptospira ... 60 2e-08 UniRef50_A6DRM3 Putative transcriptional activator n=1 Tax=Lenti... 60 2e-08 UniRef50_D0LJE5 Transcription antitermination protein nusG n=1 T... 60 2e-08 UniRef50_B9XAW5 NusG antitermination factor n=1 Tax=bacterium El... 60 3e-08 UniRef50_Q7BQV7 Putative NusG-type transcription antiterminator ... 59 5e-08 UniRef50_Q9EUG2 Actx protein n=1 Tax=Escherichia coli RepID=Q9EU... 59 6e-08 UniRef50_Q01TC5 NusG antitermination factor n=1 Tax=Candidatus S... 58 1e-07 UniRef50_C0QI35 Transcriptional antiterminator (SH3-like protein... 57 3e-07 UniRef50_D2LJZ0 NusG antitermination factor n=1 Tax=Rhodomicrobi... 56 4e-07 UniRef50_C7PUS0 NusG antitermination factor n=1 Tax=Chitinophaga... 56 4e-07 UniRef50_A8T9L1 Putative uncharacterized protein n=1 Tax=Vibrio ... 56 5e-07 UniRef50_Q6AIA2 Related to transcriptional activators n=1 Tax=De... 55 1e-06 UniRef50_Q3AU98 Transcription antitermination protein nusG n=6 T... 54 1e-06 UniRef50_A5FN19 Transcription antitermination protein nusG n=1 T... 54 2e-06 UniRef50_C7PS65 NusG antitermination factor n=1 Tax=Chitinophaga... 54 2e-06 UniRef50_A3EVT3 Transcription antitermination protein nusG n=4 T... 52 5e-06 UniRef50_C9RQP0 Transcription antitermination protein nusG n=1 T... 52 6e-06 UniRef50_A3J1W0 Putative transcriptional regulator n=1 Tax=Flavo... 52 6e-06 UniRef50_Q48B18 Transcriptional regulator n=18 Tax=Pseudomonas s... 52 7e-06 UniRef50_B8FH43 NusG antitermination factor n=1 Tax=Desulfatibac... 52 8e-06 UniRef50_Q8R8A2 Transcription antitermination protein nusG n=1 T... 52 8e-06 UniRef50_C6Y0K9 NGN domain protein n=1 Tax=Pedobacter heparinus ... 52 1e-05 UniRef50_C2HWG3 Transcriptional activator RfaH n=2 Tax=Vibrio Re... 51 1e-05 UniRef50_C4Z2Q9 Transcription antitermination protein nusG n=20 ... 51 1e-05 UniRef50_B0K4N5 Transcription antitermination protein nusG n=9 T... 51 1e-05 UniRef50_B4D2H1 Transcription antitermination protein nusG n=1 T... 50 2e-05 UniRef50_C6XVK8 NGN domain protein n=1 Tax=Pedobacter heparinus ... 50 2e-05 UniRef50_A7AFP3 Putative uncharacterized protein n=2 Tax=Parabac... 50 2e-05 UniRef50_C6QI43 NusG antitermination factor n=1 Tax=Hyphomicrobi... 50 2e-05 UniRef50_Q2NTN8 Putative uncharacterized protein n=1 Tax=Sodalis... 50 2e-05 UniRef50_B9YBP8 Putative uncharacterized protein n=1 Tax=Holdema... 50 2e-05 UniRef50_Q6VE90 Orf37 n=2 Tax=Pseudomonas syringae group RepID=Q... 50 4e-05 UniRef50_A5D5K3 Transcription antitermination protein nusG n=7 T... 48 1e-04 UniRef50_A1VS68 NusG antitermination factor n=2 Tax=Polaromonas ... 48 1e-04 UniRef50_B9KYX2 Transcription antitermination protein nusG n=5 T... 48 1e-04 UniRef50_A9DI26 NusG antitermination factor n=1 Tax=Kordia algic... 47 2e-04 UniRef50_C7PT75 NusG antitermination factor n=1 Tax=Chitinophaga... 47 2e-04 UniRef50_A5TS63 Transcription antitermination protein nusG n=10 ... 47 2e-04 UniRef50_A3XR75 NusG antitermination factor n=1 Tax=Leeuwenhoeki... 47 2e-04 UniRef50_D0WPF7 Transcription antitermination protein nusG n=1 T... 47 3e-04 UniRef50_Q54017 AnfA1 n=2 Tax=Serratia entomophila RepID=Q54017_... 47 3e-04 UniRef50_D2QI92 NusG antitermination factor n=2 Tax=Spirosoma li... 46 4e-04 UniRef50_B4S8Z4 NusG antitermination factor n=4 Tax=Chlorobiacea... 46 4e-04 UniRef50_Q1RHC5 Transcription antitermination protein nusG n=15 ... 46 5e-04 UniRef50_B0ZDY9 ActX n=5 Tax=Enterobacteriaceae RepID=B0ZDY9_ECOLX 45 6e-04 UniRef50_B8E0K4 Transcription antitermination protein nusG n=2 T... 45 8e-04 UniRef50_A6E8J5 Transcription antiterminator n=1 Tax=Pedobacter ... 45 8e-04 UniRef50_Q1Q029 Similar to transcription antitermination protein... 45 0.001 UniRef50_C9LQP9 Transcription antitermination protein nusG n=1 T... 45 0.001 UniRef50_P35872 Transcription antitermination protein nusG n=13 ... 45 0.001 UniRef50_Q9CDV7 Transcription antitermination protein nusG n=52 ... 45 0.001 UniRef50_C7PTI0 NusG antitermination factor n=1 Tax=Chitinophaga... 44 0.001 UniRef50_Q6TFR9 ORF9 n=1 Tax=Erwinia amylovora RepID=Q6TFR9_ERWAM 44 0.002 UniRef50_C7PGB9 NusG antitermination factor n=1 Tax=Chitinophaga... 44 0.002 UniRef50_C7M2W0 Transcription antitermination protein nusG n=1 T... 44 0.002 UniRef50_Q01XJ6 NusG antitermination factor n=1 Tax=Candidatus S... 44 0.003 UniRef50_A6EBM5 Putative uncharacterized protein n=1 Tax=Pedobac... 43 0.003 UniRef50_D0I9V3 Putative uncharacterized protein n=1 Tax=Grimont... 43 0.003 UniRef50_A9ECY4 Putative uncharacterized protein n=1 Tax=Kordia ... 43 0.003 UniRef50_C7RDB1 Transcription antitermination protein nusG n=2 T... 43 0.004 UniRef50_D0MHN6 Transcription antitermination protein nusG n=80 ... 43 0.004 UniRef50_C9M8Z2 Transcription antitermination protein nusG n=2 T... 43 0.004 UniRef50_Q9ZK20 Transcription antitermination protein nusG n=52 ... 42 0.005 UniRef50_B6G0A9 Transcription antitermination protein nusG n=3 T... 42 0.005 UniRef50_C1A6N2 Transcription antitermination protein nusG n=1 T... 42 0.006 UniRef50_A0LIY4 NusG antitermination factor n=2 Tax=Syntrophobac... 42 0.007 UniRef50_B8I511 NusG antitermination factor n=6 Tax=Clostridium ... 42 0.008 UniRef50_Q2LVW1 Transcription antitermination protein nusG n=1 T... 41 0.010 UniRef50_B1I1L1 Transcription antitermination protein nusG n=3 T... 41 0.012 UniRef50_D1NBR2 Transcription antitermination protein nusG n=1 T... 41 0.012 UniRef50_Q1WST1 Transcription antitermination protein nusG n=55 ... 41 0.014 UniRef50_C7GYQ7 Transcription antitermination protein nusG n=1 T... 41 0.014 UniRef50_O83264 Transcription antitermination protein nusG n=4 T... 41 0.016 UniRef50_Q1QKQ8 Transcription antitermination protein nusG n=1 T... 41 0.016 UniRef50_B0S060 Transcription antitermination protein nusG n=5 T... 41 0.017 UniRef50_B2KEU4 Transcription antitermination protein nusG n=2 T... 40 0.018 UniRef50_UPI000174528A NusG antitermination factor n=1 Tax=Verru... 40 0.019 UniRef50_Q2LQ92 Transcription antitermination protein nusG n=4 T... 40 0.024 UniRef50_A7V7E7 Putative uncharacterized protein n=2 Tax=Bactero... 40 0.024 UniRef50_C7NC81 Transcription antitermination protein nusG n=10 ... 40 0.038 UniRef50_B8IAM8 Transcription antitermination protein nusG n=2 T... 39 0.041 UniRef50_Q2RYZ3 Putative uncharacterized protein n=2 Tax=Salinib... 39 0.061 UniRef50_B3E158 Transcription antitermination protein nusG n=3 T... 39 0.073 UniRef50_D1CD65 Transcription antitermination protein nusG n=5 T... 39 0.074 UniRef50_B5YJ95 Transcription termination factor NusG domain pro... 39 0.076 UniRef50_B9JXL7 Transcription antitermination protein nusG n=3 T... 38 0.089 UniRef50_D1CTG7 Transcription antiterminator NusG (Fragment) n=1... 38 0.093 >UniRef50_P0AFW1 Transcriptional activator rfaH n=162 Tax=Enterobacteriaceae RepID=RFAH_ECO57 Length = 162 Score = 338 bits (867), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 162/162 (100%), Positives = 162/162 (100%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD Sbjct: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITE 120 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITE Sbjct: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITE 120 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL Sbjct: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 >UniRef50_D2C1D2 NusG antitermination factor n=5 Tax=Gammaproteobacteria RepID=D2C1D2_DICD5 Length = 162 Score = 249 bits (636), Expect = 2e-65, Method: Compositional matrix adjust. Identities = 116/162 (71%), Positives = 135/162 (83%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M++WYLLYCKRGQL RA+EHLERQ V CL+PMI LEKIVRGKRT VSEPLFPNYLFVEFD Sbjct: 1 MRAWYLLYCKRGQLLRAKEHLERQDVVCLSPMIALEKIVRGKRTEVSEPLFPNYLFVEFD 60 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITE 120 PE IHTTTI++TRGVSHFVRFG PA+VP VI L ++ VDP TP PGD+V ITE Sbjct: 61 PEHIHTTTISSTRGVSHFVRFGNLPALVPQQVIEDLQHHQCTTHVDPETPQPGDQVTITE 120 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G F G +AI+TEPDGEARSMLLLNL+NK+++ S+ N +FRK+ Sbjct: 121 GVFSGLEAIYTEPDGEARSMLLLNLLNKQVRQSIDNRQFRKV 162 >UniRef50_Q7MMR1 Transcription antiterminator n=58 Tax=Vibrionales RepID=Q7MMR1_VIBVY Length = 168 Score = 154 bits (389), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 74/164 (45%), Positives = 108/164 (65%), Gaps = 5/164 (3%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M+ WYLLYCKRG+ RA++HLE Q V C P I +EKI+RGKR SEPLFP+Y+FV FD Sbjct: 1 MKKWYLLYCKRGEQIRAKQHLENQGVECFYPTIEVEKILRGKRQIKSEPLFPSYIFVRFD 60 Query: 61 PEVIHT-TTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD----IVDPATPYPGDK 115 E+ T TT+ +TRGV FV+FGA P + +I++L + + + + P PGD Sbjct: 61 FEIGPTFTTVRSTRGVVDFVKFGAHPKELQGDLIYELKLLEQEGHQSALQGSNLPKPGDS 120 Query: 116 VIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 + + G F G +AIF E DGE RS++L+ +I++ + S++N++ Sbjct: 121 IKVKSGQFAGIEAIFQEQDGETRSIMLVKMISQTVPVSIENSDL 164 >UniRef50_C8QDS8 Transcriptional acivator RfaH n=2 Tax=Pantoea sp. At-9b RepID=C8QDS8_9ENTR Length = 170 Score = 150 bits (378), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 71/157 (45%), Positives = 104/157 (66%), Gaps = 1/157 (0%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGK-RTAVSEPLFPNYLFVEF 59 M++WY+ K Q +RAQ+ L Q V CL P+ + ++ G R +PLFPNY+FV F Sbjct: 1 MENWYVAQTKYAQEKRAQQQLLSQGVTCLFPVFSEVRLQNGGIRRIAEQPLFPNYIFVRF 60 Query: 60 DPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIIT 119 DPEV+HTT I ATRGVS + FG P++VP +VI +L+ + ++ P GD+V+I Sbjct: 61 DPEVVHTTAIKATRGVSSLISFGGLPSVVPDSVIIRLNQGWERAPLNTDAPVHGDRVVIR 120 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKN 156 +GAFEG +A++ EPDG R+MLLL L+N+E++ V+ Sbjct: 121 DGAFEGLEAVWYEPDGLKRAMLLLTLMNREVRVPVEG 157 >UniRef50_A0KGQ9 Transcriptional activator RfaH n=3 Tax=Aeromonadaceae RepID=A0KGQ9_AERHH Length = 183 Score = 145 bits (367), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 71/168 (42%), Positives = 101/168 (60%), Gaps = 9/168 (5%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M+ WYL YCK + RA+ HLE Q + PM+ +EK+ RGKR V EP+FPNYLF+ D Sbjct: 18 MKKWYLAYCKPKEEARARAHLEAQGIESYYPMVEIEKLRRGKRVPVREPMFPNYLFIYVD 77 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT------PYPGD 114 E + T+ +TRG+S + FG + S +++QL +D D A P GD Sbjct: 78 LEEVTPVTLKSTRGISRIIHFGREWTSISSQLVYQL---MSRDDSDEARASYASLPTQGD 134 Query: 115 KVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 KV+I G GF+AI+ EPDG+ R++LL++L+N+E S N FR+L Sbjct: 135 KVLIESGPLAGFEAIYLEPDGDKRAILLVSLLNQETSSSFDNQSFRRL 182 >UniRef50_C7RAP1 Transcriptional acivator RfaH n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RAP1_KANKD Length = 167 Score = 136 bits (342), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 68/164 (41%), Positives = 99/164 (60%), Gaps = 7/164 (4%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 +SWYL+ K Q RA EHL+ Q +NC+ P++ +E+I+RGKR EPLFP YLFVE Sbjct: 6 KSWYLINSKPKQELRALEHLKNQEINCVLPVLEVERIIRGKRQKAIEPLFPGYLFVELQT 65 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSV----YKPKDIVDPATPYPGDKVI 117 + I +TRGV FVRFG P VP +V+ L + + P ++ P GDKVI Sbjct: 66 NGQGWSKIRSTRGVRDFVRFGGVPGRVPDSVLEHLLILDTSFTP---IETNAPGAGDKVI 122 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 IT+G F+ + +F +GE RS++LL ++ K + ++N + RK Sbjct: 123 ITDGPFKDLEGVFKISNGEKRSIVLLTILGKVTEMELENKQLRK 166 >UniRef50_A0XZ39 Transcriptional activator RfaH n=2 Tax=Alteromonadales RepID=A0XZ39_9GAMM Length = 161 Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 64/158 (40%), Positives = 99/158 (62%), Gaps = 1/158 (0%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M+SWYL+ CK Q +RA+ +L Q + P++T EK+V+ +RT LFPNYLFV D Sbjct: 1 MESWYLVICKPRQEERAKANLNNQGIEAFYPILTTEKLVKSRRTVKQVALFPNYLFVCLD 60 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITE 120 + + TRG+ FV +GA+ +VP A+I L+ + + V+ P GD V ++ Sbjct: 61 SKNGPFAAVKNTRGIGGFVTYGANYQVVPLAIIEHLNNH-TSNTVESQLPKQGDAVSVSN 119 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTE 158 +F+ AI+ EPDG+ RS+LL+NL+NK+++ SV NT+ Sbjct: 120 HSFKNIDAIYKEPDGDMRSILLINLLNKQVEMSVDNTD 157 >UniRef50_Q1YPV4 Transcriptional activator RfaH n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YPV4_9GAMM Length = 169 Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 67/156 (42%), Positives = 98/156 (62%), Gaps = 2/156 (1%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M+SW+LL K Q RA E+LERQ V PMI +EK+ RG R E LFP YLFV FD Sbjct: 1 MESWFLLQTKSKQEGRAVENLERQGVKSFCPMIKVEKLSRGSRVVKEEALFPGYLFVNFD 60 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKP--KDIVDPATPYPGDKVII 118 + +TT+ +TRGVSHFV P VP ++I+QL + D + P G+++ I Sbjct: 61 QSSVSSTTVRSTRGVSHFVTSAGLPVKVPESLINQLMLRTDAGNDETVSSLPSKGERLQI 120 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSV 154 +G F G A+F++PDG+ R+++L+NL+N+++ S+ Sbjct: 121 IDGPFRGLNAVFSQPDGDRRAIVLINLLNQQVSASL 156 >UniRef50_UPI0000E0F5F6 transcriptional activator RfaH n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0F5F6 Length = 176 Score = 125 bits (314), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 62/158 (39%), Positives = 92/158 (58%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WYLLYCK + RA HL Q ++ P + K++RGKR V E LFPNY+F + D +V Sbjct: 17 WYLLYCKAKEEGRAVMHLANQGIDAFYPKANITKVLRGKRQTVEEALFPNYVFAQLDHDV 76 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEGAF 123 + T++ +TRGV FV+ G V A+I D +D A P GD V++ + Sbjct: 77 HNFTSVRSTRGVIGFVKQGKDYQKVSQALIDVFVQCDTVDKLDSALPTKGDNVMLQHPQY 136 Query: 124 EGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 + AI+ EP GE R++LL++L+NK ++ V N++F K Sbjct: 137 QNIPAIYQEPKGENRAILLIHLLNKPVELVVDNSQFTK 174 >UniRef50_A1T084 NusG antitermination factor n=1 Tax=Psychromonas ingrahamii 37 RepID=A1T084_PSYIN Length = 169 Score = 124 bits (310), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 68/163 (41%), Positives = 93/163 (57%), Gaps = 4/163 (2%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 W+++YCK + RAQ +LE Q V P I EKI+R K+ V EPLFP+YLFV Sbjct: 5 WFVVYCKSREELRAQRNLENQGVYSFFPKICKEKILRSKKKVVEEPLFPSYLFVNISKND 64 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPS---AVIHQLSVYKPKDIVDPATPYP-GDKVIIT 119 + I +TRG+++FV+FG S A +P I QL K V+ Y GDK+ I Sbjct: 65 EKFSAIRSTRGINNFVKFGLSIATIPDQQIKKIEQLCHVNNKLAVNSEDVYQNGDKIEIL 124 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G F+G AIF DG RSMLLL ++N++ S KN+ +K+ Sbjct: 125 SGPFKGLTAIFNIEDGLERSMLLLKILNQDNNISFKNSALKKV 167 >UniRef50_A6FES1 Putative transcriptional activator RfaH n=1 Tax=Moritella sp. PE36 RepID=A6FES1_9GAMM Length = 174 Score = 118 bits (295), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 64/162 (39%), Positives = 91/162 (56%), Gaps = 3/162 (1%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + WYLLYCK + RA +L+ Q + P +T+EK +R K +FPNYLFV D Sbjct: 6 KDWYLLYCKGKEEPRALINLKNQGIESFYPTMTVEKKLRNKLICQEIAIFPNYLFVAIDK 65 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSV---YKPKDIVDPATPYPGDKVII 118 + +I +TRGV FV+ GA+ VP+A++ +L + K + G+ VII Sbjct: 66 NTANFNSIRSTRGVIDFVKCGANYTKVPAALVTELRATQRCRDKSANEVTVFSEGETVII 125 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 +GAF+G +AI+ DG RSMLL+NLIN SV N E + Sbjct: 126 QDGAFKGIEAIYQCKDGLERSMLLINLINHSTTMSVANGEIK 167 >UniRef50_Q3J8A9 Transcriptional activator RfaH n=1 Tax=Nitrosococcus oceani ATCC 19707 RepID=Q3J8A9_NITOC Length = 174 Score = 113 bits (283), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 62/162 (38%), Positives = 92/162 (56%), Gaps = 3/162 (1%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WYL+YCK Q + AQE+LERQ P++ + +R A EPLFP YLF+ D E Sbjct: 11 WYLIYCKPRQERLAQENLERQNFETYLPLVRQMRRRAYRRIATVEPLFPRYLFIHLDTEK 70 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD-IVDPATP--YPGDKVIITE 120 + +I +T GV VRFGA PA VP +I +L ++ D I D A+P G +V++ E Sbjct: 71 DNWGSIRSTIGVISLVRFGAQPAHVPDTLIRELQTHEGSDGIQDLASPDFRKGQQVLVEE 130 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G G + I+ +G+ R+ +LL ++ K+IK V ++L Sbjct: 131 GLLAGHEGIWLTSNGKKRAHILLEIMGKQIKTEVNENWLKRL 172 >UniRef50_Q4K6G2 Transcriptional activator RfaH n=2 Tax=Pseudomonadaceae RepID=Q4K6G2_PSEF5 Length = 239 Score = 112 bits (279), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 92/160 (57%), Gaps = 3/160 (1%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 +WYL+ CK Q RA+E+L RQ +C P E++V+G+R + +E LFP YLF+ + + Sbjct: 83 TWYLVQCKPRQDLRAEENLRRQGFHCYRPQRGCERVVQGRRQSGTESLFPGYLFIALEHD 142 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEGA 122 + +TRGV+ V F P VP ++I L + D+ D + PY G +V ITEG Sbjct: 143 A-SWAPLRSTRGVNRLVAFNGQPLAVPVSLIESLR-QRVTDM-DTSLPYKGTRVCITEGC 199 Query: 123 FEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 F +AIF G+ R +LLL L+N++ + + + RK+ Sbjct: 200 FADLEAIFESSIGDERVVLLLTLLNQQRRIELPLSSIRKI 239 >UniRef50_A6F1J5 Transcriptional activator RfaH n=2 Tax=Marinobacter RepID=A6F1J5_9ALTE Length = 163 Score = 105 bits (262), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 58/151 (38%), Positives = 80/151 (52%), Gaps = 9/151 (5%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 +WY L K Q RA HL+ Q + C P IT+EKI GKRT EPLFP YLFV + Sbjct: 2 TWYALQHKPSQGDRALTHLQNQDIACFYPKITVEKIKAGKRTKQLEPLFPGYLFVNLEQT 61 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD----IVDPATPYPGDKVII 118 + +TRG+ V F PA +P VI + KD + + PG V + Sbjct: 62 DPMWAKLRSTRGILRIVSFANKPAAIPDDVIQHI-----KDSLHTVAEQGGIKPGQAVEL 116 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKE 149 EG F+G +AIF DGE R+++L++ + K+ Sbjct: 117 DEGPFKGIEAIFQAYDGEERAIVLISFMQKQ 147 >UniRef50_Q82X31 Putative transcriptional activator n=1 Tax=Nitrosomonas europaea RepID=Q82X31_NITEU Length = 165 Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/161 (36%), Positives = 90/161 (55%), Gaps = 3/161 (1%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD--P 61 WYL++ K Q + A ++L++Q C PM+ +EK+ G T V EPLFP YLF++ + Sbjct: 3 WYLVHTKPKQEKCAFQNLQQQGYRCYLPMLPVEKLHLGNLTVVDEPLFPRYLFIQLEQGD 62 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY-PGDKVIITE 120 I +TRGV+ V FG+ PA + +I L + + P + PG++V +TE Sbjct: 63 SAKSWVPIRSTRGVNRLVCFGSEPARIDDILIDLLRMQEASFQHKPERLFKPGERVRLTE 122 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 GAF G + I+ +GE R M+L+ L++K + V T RK Sbjct: 123 GAFAGIEGIYQMAEGERRVMVLIELLSKPVAMRVSPTSLRK 163 >UniRef50_A7FC44 Transcriptional activator n=1 Tax=Yersinia pseudotuberculosis IP 31758 RepID=A7FC44_YERP3 Length = 159 Score = 103 bits (257), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 59/150 (39%), Positives = 83/150 (55%), Gaps = 18/150 (12%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTA--VSEPLFPNYLFVE 58 M++WYLL K GQ+ R Q L+R VN +P I ++K+ T V+EP+FP YLFVE Sbjct: 1 MKNWYLLSYKYGQVNRVQFGLDRLGVNSFSPSIQVKKVRSDSGTIRLVNEPMFPTYLFVE 60 Query: 59 FDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVII 118 FD E IHTTTI++T GV++FV+FG P +P ++IHQL ++ Sbjct: 61 FDIESIHTTTISSTLGVNYFVKFGTEPKPIPLSLIHQLM----------------NRSEC 104 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINK 148 + E I T PD + R L + LI + Sbjct: 105 SSQRNEEIDEIATIPDKKLRCALFIKLITQ 134 >UniRef50_Q1QVL5 Transcription antitermination protein nusG n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QVL5_CHRSD Length = 182 Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 55/150 (36%), Positives = 82/150 (54%), Gaps = 4/150 (2%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY++ CK G+ RA EHL Q P++ ++K R K ++EPLFP+YLF+ D Sbjct: 19 WYVVQCKGGESFRAGEHLTNQGYRVFHPVLEVQKKRRNKLVWIAEPLFPHYLFIHLDRVA 78 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATP----YPGDKVIIT 119 + I +TRGV V FG P VP A+I L+ D + PG+ V IT Sbjct: 79 SNWRPIRSTRGVLKLVGFGDEPLPVPDALIETLAARAHLDEASRTSGNAYFRPGEIVEIT 138 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLINKE 149 EG F+ QA+F G+ R+++LLN+++ + Sbjct: 139 EGPFQALQAVFDTQQGDERAIVLLNMLHHQ 168 >UniRef50_Q0ACI7 Transcription antitermination protein nusG n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0ACI7_ALHEH Length = 177 Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 55/154 (35%), Positives = 84/154 (54%), Gaps = 4/154 (2%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 ++WYL+Y K Q + A+++L RQ + P + + K +R V EP+FP YLFVE D Sbjct: 13 RAWYLIYTKPRQEEAARDNLGRQGFHAWLPRVRVVKRRGTRRVPVVEPMFPRYLFVELDS 72 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK-DIVDPAT---PYPGDKVI 117 + I++T GV+ VRFG PA VP ++ L + DI D + P GD V Sbjct: 73 AYQDWSPISSTLGVTSLVRFGGVPAKVPGPLVAALQARADEDDICDLSARQQPRAGDTVR 132 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIK 151 + GAF G++A+F G R ++LL + K+ + Sbjct: 133 VAHGAFAGYEAVFQARSGRERVLVLLEVAGKQSR 166 >UniRef50_Q5QWY1 Transcription antiterminator RfaH n=2 Tax=Idiomarina RepID=Q5QWY1_IDILO Length = 165 Score = 98.2 bits (243), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 55/157 (35%), Positives = 84/157 (53%), Gaps = 2/157 (1%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY++ K Q +RA +LE Q AP +T++K+ RG RT+V E +FP Y+FV+ D + Sbjct: 9 WYIVRTKPKQEERAILNLENQGFGVFAPELTVKKVRRGVRTSVVERMFPGYVFVKPDDII 68 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEGAF 123 + +T GV+ +RFG + VP I Q+ + D P GD V I +G F Sbjct: 69 EQFYKLRSTYGVAGVLRFGDNIPKVPQRWIDQMR--GVDQLTDEQAPQIGDTVEIQQGPF 126 Query: 124 EGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 GF A + DGE+R ++L + KE+K + E + Sbjct: 127 RGFLAKIVKLDGESRCFVMLEWMQKEVKANFSYKELQ 163 >UniRef50_Q48H23 Transcriptional activator RfaH n=7 Tax=Pseudomonas RepID=Q48H23_PSE14 Length = 170 Score = 97.1 bits (240), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 59/153 (38%), Positives = 81/153 (52%), Gaps = 12/153 (7%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPM-ITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 WYL+ K Q RA+EHL RQ C P+ + ++K R EPLFP YLF++ D Sbjct: 10 WYLIQTKPRQEARAEEHLRRQHFQCYRPLQVDVKKT--AARVQADEPLFPGYLFIQMDQV 67 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQ----LSVYKPKDIVDPATPYPGDKVII 118 + I +TRGVS V FG P V +I Q LS PK A GD V+I Sbjct: 68 QDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLSTPAPK-----ARFIQGDPVMI 122 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIK 151 T G++ +AIF DG R+++LLN++ ++ K Sbjct: 123 TTGSWSDVEAIFLSEDGTERAVILLNMLQRQQK 155 >UniRef50_C1DDG1 RfaH n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DDG1_LARHH Length = 172 Score = 95.9 bits (237), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 54/165 (32%), Positives = 85/165 (51%), Gaps = 10/165 (6%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WYL++ K Q Q A ++L++Q C PM+ EK+ +G+ E LFP YLF+ Sbjct: 11 WYLVHTKPRQEQCALQNLQQQGYQCYLPMLATEKLRQGRLVVSEEALFPRYLFIRLGLGQ 70 Query: 64 IHTTT--INATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYP----GDKVI 117 + I +TRGV+ VRFG PA + +I +L + A P P G++V Sbjct: 71 SDKSWAPIRSTRGVNQLVRFGTEPARIDDGLIERLRGHDAAR----ANPEPLFRTGERVR 126 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 +T+G F G + I+ DGE+R M+L+ + + + V RK+ Sbjct: 127 LTDGPFAGIEGIYQMTDGESRVMVLIEFLTRPVVARVAPGSLRKV 171 >UniRef50_B1KMD8 Transcriptional acivator RfaH n=21 Tax=Shewanella RepID=B1KMD8_SHEWM Length = 179 Score = 94.0 bits (232), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 55/169 (32%), Positives = 85/169 (50%), Gaps = 15/169 (8%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M++WYLLYCK RA +L Q ++ P I EK V+G+ + PLFP YLF+ D Sbjct: 3 MKAWYLLYCKPRGEARAVHNLTLQNIDTYLPTIGEEKRVKGEVSIKRIPLFPGYLFINID 62 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD--PATPY------- 111 P+V I++TRGV V + ++IH + + + K + + PA+ Sbjct: 63 PQVTSVARIHSTRGVGRIVGCNELMTSIDDSIIHSIRLREHKLLSELLPASELSQKCDGS 122 Query: 112 ------PGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSV 154 PGD+V TEG F + IF E G+ R +L ++ ++ + SV Sbjct: 123 STVEINPGDQVKFTEGPFADLEGIFAEKSGDKRCHVLFEIMGQKKRVSV 171 >UniRef50_A9ND88 Transcriptional activator RfaH n=6 Tax=Coxiella burnetii RepID=A9ND88_COXBR Length = 167 Score = 90.5 bits (223), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 52/148 (35%), Positives = 75/148 (50%), Gaps = 2/148 (1%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 WYL+Y K Q + A+E+LERQ P I + + G ++EPLFP YLF+ + + Sbjct: 6 DWYLIYTKPRQERIAEENLERQGYRIYLPFIQVNRRRLGCYQLITEPLFPRYLFILLNID 65 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY--PGDKVIITE 120 + I +TRGVS VRFG PA VP + L + V P G +V I + Sbjct: 66 KDNWGPIRSTRGVSALVRFGGIPAKVPPDFVQFLKNNETSASVPPKVSLFQKGQRVQIID 125 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINK 148 G G++ +F G R LLL+++ K Sbjct: 126 GVMAGYEGVFEMYSGAKRVTLLLDMVGK 153 >UniRef50_A1WZB7 Transcription antitermination protein nusG n=1 Tax=Halorhodospira halophila SL1 RepID=A1WZB7_HALHL Length = 175 Score = 89.4 bits (220), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 2/161 (1%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 +WYL+Y K Q +RA +L+ Q C PM + + + V EP+FP YLF+ Sbjct: 14 AWYLVYSKPRQEERAWWNLDHQGFRCFLPMARFRRRRQRRYQTVIEPMFPRYLFIRLAAG 73 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD--PATPYPGDKVIITE 120 + + I +T GVS VRFG PA VP ++ + D P PG++V + + Sbjct: 74 LEDWSPIRSTTGVSGLVRFGTWPARVPDGLVDTIRARIEDGHCDLAPEPLQPGERVRVLD 133 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 G F+ ++ IF + R M+LL++ + +V + + Sbjct: 134 GPFQSYEGIFRASRSDERVMILLDVAGQHTTLTVSQHQIER 174 >UniRef50_Q3KCF2 Transcriptional activator RfaH n=1 Tax=Pseudomonas fluorescens Pf0-1 RepID=Q3KCF2_PSEPF Length = 178 Score = 88.6 bits (218), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 52/154 (33%), Positives = 78/154 (50%), Gaps = 13/154 (8%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 +WYLL CK Q +RA +L +Q P + E+++RGKR V E LFP YLF++ + Sbjct: 10 NWYLLQCKPRQDERAHLNLLQQNYVVFHPQLVSERVIRGKRQRVQESLFPGYLFIQLSRD 69 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL-------SVYKPKDIVDPATPYPGDK 115 + + +TRGVS FV F PA V VI L ++ +P + + PG+ Sbjct: 70 -DNWAPLRSTRGVSRFVEFNHGPATVAEHVIEHLRARCLESTLSEPDEALK-----PGEN 123 Query: 116 VIITEGAFEGFQAIFTEPDGEARSMLLLNLINKE 149 + I G + +F G R M+LL +N+E Sbjct: 124 LQIVSGPLAPLEGVFLGLHGTDRVMILLQFLNRE 157 >UniRef50_A6GM36 NusG antitermination factor n=1 Tax=Limnobacter sp. MED105 RepID=A6GM36_9BURK Length = 179 Score = 86.7 bits (213), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 51/166 (30%), Positives = 82/166 (49%), Gaps = 5/166 (3%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTA-VSEPLFPNYLFVEF 59 M WY++Y K Q A E+L+RQ N P ++K G+ T V EPLFP Y+F++ Sbjct: 13 MAQWYVMYTKPRQETVALENLQRQNYNVFFPQARVQKRKTGQGTVQVVEPLFPRYMFIQL 72 Query: 60 DPEVIHTTTINATRGVSHFVRFGASPAIVPSAVI----HQLSVYKPKDIVDPATPYPGDK 115 + V + + +T+G V+FG P++VP +I HQL D++ G + Sbjct: 73 EVGVSDFSKLRSTKGCVDLVKFGGKPSVVPIELIELIQHQLDSDSVLDLLKLNELEVGGE 132 Query: 116 VIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 V + EG FEG + R ++LLN++ E + ++ K Sbjct: 133 VRVAEGPFEGMMGKIAARKSDQRVIVLLNVLGAERSVELAQSQLDK 178 >UniRef50_B8KUX9 Transcription termination factor nusG domain protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KUX9_9GAMM Length = 214 Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 55/149 (36%), Positives = 69/149 (46%), Gaps = 2/149 (1%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY++ K A+ LERQ AP I L K RGK V EPLFP YLFV V Sbjct: 23 WYVVASKPRSEGVAKSQLERQGFVTCAPRIKLRKRQRGKWQQVIEPLFPGYLFVALRLGV 82 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQ-LSVYKPKDIVDPATPYPGDKVIITEGA 122 I +T G VR G VP AV+ LS+ + D + A PG V G Sbjct: 83 DDPAPIRSTLGCIGLVRMGREFVPVPEAVMQPLLSIGESPDASE-AVFQPGQAVRFEAGP 141 Query: 123 FEGFQAIFTEPDGEARSMLLLNLINKEIK 151 FEG IF P G+ R+ +L+ L+ + Sbjct: 142 FEGLSGIFKMPKGQDRAEVLITLLGSSAR 170 >UniRef50_A4WZX9 Transcription antitermination protein nusG n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4WZX9_RHOS5 Length = 174 Score = 77.0 bits (188), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 2/160 (1%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WYL+ K + A+ +L RQ + +P K + + LFP YLFV F+PE Sbjct: 13 WYLVQTKPNAFRIAERNLLRQDFSVFSPTQNQTKKHGTRFRHTVQQLFPGYLFVRFNPEF 72 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD--IVDPATPYPGDKVIITEG 121 INAT GVS V FG P+ VP A+I L D ++ P GD+V I G Sbjct: 73 PQWRAINATYGVSRLVTFGNIPSPVPHALIAGLRQRCANDGTLLPPEQLSLGDRVRIISG 132 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 F + A + + + R +LL+++ + K ++ +K Sbjct: 133 PFADYVATVEQIEPDKRVWILLDILGGQTKTQIQIAALQK 172 >UniRef50_Q2CAE9 Transcriptional antitermination protein, putative n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CAE9_9RHOB Length = 162 Score = 75.5 bits (184), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 48/153 (31%), Positives = 77/153 (50%), Gaps = 5/153 (3%) Query: 14 LQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATR 73 L+ A ++L RQ + P+ + +RG+ +V++P+FP YLFV P + TR Sbjct: 9 LRLATQNLARQGLAVFCPLQQASRRIRGQIRSVTKPVFPGYLFVSLAPAGGEMRAASYTR 68 Query: 74 GVSHFVRFGAS-PAIVPSAVIHQLSVY-KPKDIVDPATPYP---GDKVIITEGAFEGFQA 128 GV+ V S P VP A+I +L P+ I+ P GD+V +T+G G + Sbjct: 69 GVARLVTLDESGPKAVPDALIEELQARCTPEGILGPPEADQLDVGDRVWVTDGPLAGQVS 128 Query: 129 IFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 EAR LLL+L+ ++ + +VK R+ Sbjct: 129 RIIALAPEARIWLLLDLMGRQTRVAVKREAVRR 161 >UniRef50_C9Y5P4 Transcriptional activator rfaH n=3 Tax=Enterobacteriaceae RepID=C9Y5P4_CROTZ Length = 156 Score = 74.3 bits (181), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 39/96 (40%), Positives = 50/96 (52%), Gaps = 4/96 (4%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPM---ITLEKIVRGKRTAVSEPLFPNYLFV 57 M WY+LYC +QR E V P +T R R +PLFP+YLF+ Sbjct: 8 MYKWYVLYCNSQDIQRISRRAEDIGVEVFCPRYIKVTPRTDCRAVRQE-EKPLFPSYLFL 66 Query: 58 EFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVI 93 FD V+HT+TI + G FV FGA+P VP +VI Sbjct: 67 RFDVNVVHTSTITSIPGAHGFVSFGAAPCTVPESVI 102 >UniRef50_A3V684 Transcriptional activator RfaH n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V684_9RHOB Length = 171 Score = 72.8 bits (177), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 51/165 (30%), Positives = 78/165 (47%), Gaps = 11/165 (6%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSE-PLFPNYLFVEFDP 61 +W++ + L A +LERQ+V AP L RG + + P FP Y+FV+ Sbjct: 9 AWHIAQLRPNGLLMALRNLERQSVAHFAPT-ELRTERRGAKFVTRDVPAFPGYVFVQPSA 67 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSV-YKPKDIVDPATPYP----GDKV 116 +N+TRG++ V G PAIVP+ +I L + + P DI TP P GD V Sbjct: 68 ASGGVRAVNSTRGITKLVTLGQGPAIVPAGLIAALRIRFAPPDI----TPAPQFDQGDWV 123 Query: 117 IITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 I +G F F A R LL++L+ + + +V ++ Sbjct: 124 RILDGPFAEFVAQVEATPAAERVYLLIDLMGRATRVAVDARSLKR 168 >UniRef50_B7UF78 Similar to transcriptional activator n=1 Tax=Yersinia pseudotuberculosis RepID=B7UF78_YERPS Length = 152 Score = 72.0 bits (175), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 40/101 (39%), Positives = 57/101 (56%), Gaps = 6/101 (5%) Query: 1 MQSWYLLYCKRGQ--LQRAQEHLERQAVNCLAPMITLEKIVRGKRTA---VSEPLFPNYL 55 M +WYL + G+ L +AQ L R ++ P+I L + R R + + EPLF Y+ Sbjct: 1 MFNWYLACHQPGKETLYKAQLELSRLHIDSFCPLIRLSR-PRPDRPSGRLIIEPLFSGYI 59 Query: 56 FVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL 96 F++FDPE+ HTT + A VSHFV+FG +P VI L Sbjct: 60 FIQFDPEITHTTKLTALSSVSHFVKFGCDIRPIPKTVIESL 100 >UniRef50_A6FV14 Transcription antitermination protein nusG n=2 Tax=Rhodobacteraceae RepID=A6FV14_9RHOB Length = 177 Score = 70.5 bits (171), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 46/153 (30%), Positives = 69/153 (45%), Gaps = 2/153 (1%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WYL+ K + A +L+RQ+ PM + + GK +PLFP Y+FV D Sbjct: 9 WYLVQFKPNSHKIAARNLQRQSFQTFLPMQDVTRRRAGKFHTAPQPLFPGYMFVSLDTIR 68 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD--IVDPATPYPGDKVIITEG 121 INAT GVS V P VP +++ L D ++ P T PG++V + G Sbjct: 69 GPWRQINATLGVSKLVSVAGRPQPVPDTLVNALLERCDDDGKLLPPETFSPGEQVTLRSG 128 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKEIKHSV 154 F F A + + R +LL + + + V Sbjct: 129 PFASFVATVEKMQPDRRVWVLLEFMGQATRIQV 161 >UniRef50_B2CBC8 Transcription antiterminator n=2 Tax=Enterobacteriaceae RepID=B2CBC8_KLEPN Length = 151 Score = 69.3 bits (168), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 37/96 (38%), Positives = 50/96 (52%), Gaps = 4/96 (4%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPM---ITLEKIVRGKRTAVSEPLFPNYLFV 57 M WY+LYC ++R +E V P +T K R R + LFPNYLF+ Sbjct: 1 MYEWYVLYCNNQDVERITRRVEGLDVEVFCPRYIKVTPRKDCRAVRQE-EKVLFPNYLFL 59 Query: 58 EFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVI 93 FD + HT+TI + G FV FG++P VP +VI Sbjct: 60 CFDVNITHTSTITSIPGAHGFVSFGSTPCTVPKSVI 95 >UniRef50_A4EGG1 Transcriptional antitermination protein, putative n=1 Tax=Roseobacter sp. CCS2 RepID=A4EGG1_9RHOB Length = 172 Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 3/162 (1%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 W++L K L A+ HL RQ L P+ + + R V +PLFP YLF Sbjct: 9 GWFVLQLKPNGLSLARTHLARQGFLTLMPLREVSQHARYGLRTVRQPLFPGYLFFSVTAR 68 Query: 63 VIHTTTINATRGVSHF-VRFGASPAIVPSAVIHQLSVYKPKD--IVDPATPYPGDKVIIT 119 I+ TRGV+ V PA +P+ + L +D + D A GD+V + Sbjct: 69 QINWPAAANTRGVTRIVVGTDGQPARLPADIAAGLLAITTEDGMLGDVADLQTGDQVGVV 128 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 G F G+ A D R LL++++ +E ++ + K Sbjct: 129 NGPFAGWMAKVVSADTPDRIQLLVDVMGRETAVNIAGRDLEK 170 >UniRef50_Q0F316 Transcriptional activator RfaH n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F316_9PROT Length = 172 Score = 67.4 bits (163), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 6/156 (3%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + W+ + K Q A +LERQ PMI GK + P F YLFV Sbjct: 4 KQWFAIRVKPRQESLAAANLERQGFEVYLPMINTRISHAGKVSWQPRPFFAGYLFVHLSI 63 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIV-----DPATPY-PGDK 115 + TTI +T GV V FG + VI L ++ + P +P+ G+K Sbjct: 64 DEQRWTTIRSTVGVLAPVAFGTFYPPLSDQVIALLQARHDENGLIAVSSTPESPFRAGEK 123 Query: 116 VIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIK 151 V + +GA +G + +F E G+ R+++LL+ + K ++ Sbjct: 124 VRMLDGAMKGLEGVFIEMRGQDRALILLDWMKKSMR 159 >UniRef50_Q0FE68 Transcription antitermination protein nusG n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FE68_9RHOB Length = 166 Score = 66.2 bits (160), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/154 (26%), Positives = 70/154 (45%), Gaps = 6/154 (3%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + W++L K +A ++L RQ P+ + + + PLFP Y+F+ FD Sbjct: 3 KEWFILQFKPNSHHQATKNLTRQGFETFLPLTDITSRKTSRFINTTRPLFPGYMFITFDR 62 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY----PGDKVI 117 IN T GVS V F ++ +P+ ++ L V D+ P GD+V Sbjct: 63 TKPEWHKINNTYGVSRLVTFNSNLKSIPTTLVENLMVR--CDLSSKILPVENLKKGDQVK 120 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIK 151 I G F F A + + R +L++L++++ K Sbjct: 121 ILHGPFANFIATVETYETDQRIWVLMDLMSRKTK 154 >UniRef50_B1I6V9 Transcription antitermination protein nusG n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I6V9_DESAP Length = 173 Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 41/151 (27%), Positives = 68/151 (45%), Gaps = 5/151 (3%) Query: 17 AQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVS 76 A LE + + P I++ + + ++ EPLFP YLFV+ PE + +N T GV Sbjct: 18 AARQLEAKGLEVFLPRISVTRKRGASKFSLWEPLFPGYLFVKLLPEPVQVQRVNWTPGVR 77 Query: 77 HFVRFGASPAIVPS---AVIHQLSVYKPKDIVDPATPYP-GDKVIITEGAFEGFQAIFTE 132 + G +P VP A+I Q + P +P G +V + G F G + + Sbjct: 78 RLLCAGDTPVPVPDEAIALIRQRVGPGGRLTPKPQAEFPAGSRVAVRHGPFAGLLGVVEK 137 Query: 133 P-DGEARSMLLLNLINKEIKHSVKNTEFRKL 162 P G R +LL L+ ++ + + +L Sbjct: 138 PMSGRGRVRVLLELLQRQTAVEIDAVDLDRL 168 >UniRef50_B3DWJ1 Transcriptional activator RfaH, NusG family n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DWJ1_METI4 Length = 185 Score = 64.3 bits (155), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 38/128 (29%), Positives = 65/128 (50%), Gaps = 3/128 (2%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY L + + + A E+L+++ + P +KI K + V EPLFP YLF +F+ Sbjct: 11 WYCLSIQPKKEKLAVENLKKENIEVFFPQFQYQKIRSRKTSLVLEPLFPGYLFAKFNL-Y 69 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY--PGDKVIITEG 121 T + +T+GV V FG+S ++P + I +L + ++ + G + I EG Sbjct: 70 SKLTFVRSTKGVRKVVHFGSSYPVIPDSFIEELRIQFGEEGIKTIRERIDVGSTINIAEG 129 Query: 122 AFEGFQAI 129 F+G+ I Sbjct: 130 PFQGYSCI 137 >UniRef50_Q2WBC3 Transcription antitermination protein nusG n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2WBC3_MAGSA Length = 167 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 41/155 (26%), Positives = 73/155 (47%), Gaps = 4/155 (2%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M+SW++++ + A HL+RQ + P + + K V PLFP YLF+ D Sbjct: 1 MESWFVVHTHANAEKIAAGHLQRQHFDVYLPQYSKRRSHARKVEWVKAPLFPRYLFLRMD 60 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD---IVDPATPY-PGDKV 116 P++ +I +T GV V G P + +I ++ + + A P+ G ++ Sbjct: 61 PDLTPWFSIRSTVGVHSLVCRGGMPVPLGQVIIDEIRGREDDSGLVSLGEAMPFASGQRL 120 Query: 117 IITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIK 151 I EG +F D R +LLL+L+ ++++ Sbjct: 121 EIVEGPLAEQLGLFQGLDDMNRVVLLLDLLGRQVR 155 >UniRef50_A3WUF1 Transcriptional antitermination protein, putative n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WUF1_9BRAD Length = 170 Score = 62.8 bits (151), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 46/155 (29%), Positives = 72/155 (46%), Gaps = 6/155 (3%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 Q WY++ +A HL RQ P + + + PLFP YLFV D Sbjct: 6 QQWYVVQTHPHAEGKAAAHLRRQGFEVYLPRYARRRRHARRVDITASPLFPRYLFVAIDL 65 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD---IVDPATPY-PGDKVI 117 I +T GV++ V G PA VP V+ +L + +D A + GD V Sbjct: 66 VHQRWRAIRSTVGVTNLVYSGDEPAPVPDDVVRRLKQREDSKGCVQLDLAPRFSAGDTVR 125 Query: 118 ITEGAFEGFQAIF-TEPDGEARSMLLLNLINKEIK 151 + +GAF +F + DGE R ++LL+L+ ++++ Sbjct: 126 VVDGAFSDCLGLFESMSDGE-RVLVLLDLLGRKVR 159 >UniRef50_C3M8G1 Transcriptional activator affecting biosynthesis, assembly and export of lipopolysaccharide core, F pilin, and hemolysin n=2 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C3M8G1_HAMD5 Length = 149 Score = 62.4 bits (150), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 38/99 (38%), Positives = 54/99 (54%), Gaps = 4/99 (4%) Query: 2 QSWYLLYCKRG--QLQRAQEHLERQAVNCLAPMITL--EKIVRGKRTAVSEPLFPNYLFV 57 + WYL K G L +AQ+ L + V+ L+P I +++ R + AV EPLF YLF Sbjct: 3 KKWYLTCHKSGCSNLYKAQQALIQIEVHSLSPSIQTWRQRLDRKNKRAVIEPLFKGYLFT 62 Query: 58 EFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL 96 FDPE I T I G+SH VRF + + AV+ ++ Sbjct: 63 CFDPEKIPTRKIEHCAGISHLVRFANTIVPIREAVMQEI 101 >UniRef50_Q1NMQ2 NGN n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NMQ2_9DELT Length = 176 Score = 61.6 bits (148), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 39/158 (24%), Positives = 73/158 (46%), Gaps = 6/158 (3%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 +WY + K + + A++H Q P++ + + +R V P+FP YLF+ +PE Sbjct: 9 AWYAIRTKPHKEEMARQHYLNQQYTVYLPLMRVVRSHARRRQVVFRPVFPGYLFLRLNPE 68 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY------PGDKV 116 I+ATRG +RFG VP VI L + ++ V + PG +V Sbjct: 69 TCDWAAIHATRGSIGPLRFGEHYVPVPDWVIEGLQAREDEEGVIAPGAFQKEKLVPGCEV 128 Query: 117 IITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSV 154 +T + F G+ +L++++ ++++ +V Sbjct: 129 EVTMADGSAGKGFFCSFRGKENVEILMDILKRQVRTTV 166 >UniRef50_Q48MX6 Transcriptional activator RfaH n=1 Tax=Pseudomonas syringae pv. phaseolicola 1448A RepID=Q48MX6_PSE14 Length = 192 Score = 61.2 bits (147), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 2/148 (1%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + WYL+ CK GQ RA+E+L Q P I R T + PLFP YLF+ Sbjct: 42 KEWYLVQCKSGQDSRAEENLTAQGYANFRPTINASSESRSVNTKHNSPLFPGYLFIHLSA 101 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEG 121 + + +T+G+ V+FG V + +I + ++ D + Sbjct: 102 S-DNWAPVRSTKGILTIVKFGGRAHAVRNEIIQDIKTRAESLNYSHSSHSEKDSAPLDNR 160 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKE 149 E I + E R++LL+ + +E Sbjct: 161 GSE-ISDILSAKSHEERTLLLVGFLQRE 187 >UniRef50_Q04WD1 Transcription antiterminator n=4 Tax=Leptospira RepID=Q04WD1_LEPBJ Length = 179 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 37/136 (27%), Positives = 64/136 (47%), Gaps = 12/136 (8%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVE-- 58 + WY LY ++ + L+ + + C P+I+ +K + V EP++P+Y+FV+ Sbjct: 7 VNEWYALYTNPRAEKKLKRLLQERKIECFLPLISKKKKWSDRWKVVEEPMYPSYIFVKIS 66 Query: 59 -FDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVY---KPKDIVDPATP--YP 112 F V I G HFV + P ++P ++ + ++ P I P Sbjct: 67 FFQDRV----KILQLPGAHHFVFYSGKPYVIPDEDLNLIRIFLETYPDRIQVEIQERLLP 122 Query: 113 GDKVIITEGAFEGFQA 128 G K++I EG F GF+A Sbjct: 123 GKKILIQEGPFAGFKA 138 >UniRef50_A6DRM3 Putative transcriptional activator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DRM3_9BACT Length = 169 Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 46/152 (30%), Positives = 74/152 (48%), Gaps = 11/152 (7%) Query: 3 SWYLLYCK-RGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 WY LY K R + AQ L+ P I + K+ RGK T V LFP+Y+F++ + Sbjct: 5 DWYCLYTKPRQENLTAQSALD-AGFPTFNPKIEVRKVRRGKATYVHAALFPSYVFIQANE 63 Query: 62 EVIHTTTINATRGVSHFVRFG--ASPAIVPSAVIHQLSVYKPKDIV--DPATPYPGDKVI 117 + RGV+ + FG +P+ ++ LS + ++ D GDKV Sbjct: 64 GNLDKARY--LRGVNRIIGFGRDGESLKIPAVILETLSTFLEDNVYKHDMHELKDGDKVQ 121 Query: 118 ITEGAFEGFQAIFTE--PDGEARSMLLLNLIN 147 + +G +G +AIF + DGE R+++L L + Sbjct: 122 VLDGPLKGVEAIFKKGLKDGE-RAVVLFELFS 152 >UniRef50_D0LJE5 Transcription antitermination protein nusG n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJE5_HALO1 Length = 189 Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 49/158 (31%), Positives = 76/158 (48%), Gaps = 25/158 (15%) Query: 4 WYLLYCKRGQLQRAQEHLERQAV---------NCLAPMITLEKIVRGKRTAVSEPLFPNY 54 WY+++ G QR +E L+++AV L P + + ++V+GKR ++ FP Y Sbjct: 19 WYVVHTHAGYEQRVRETLQQRAVALGFKDNIGEILVPTLNVMEVVKGKRKTSTKKFFPGY 78 Query: 55 LFV--EFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYP 112 +FV EF V H I T V+ FV G +P VP + ++SV + + P P Sbjct: 79 IFVQMEFTDSVYH--LIRNTPKVTGFVG-GNTPQPVPES---EISVIHNTMSDNHSKPRP 132 Query: 113 ------GDKVIITEGAFEGFQAIFTE--PDGEARSMLL 142 GD V +T+G F F A E PD + +L+ Sbjct: 133 KVMFEQGDNVRVTDGPFASFTATVEEVKPDKQKLRVLV 170 >UniRef50_B9XAW5 NusG antitermination factor n=1 Tax=bacterium Ellin514 RepID=B9XAW5_9BACT Length = 205 Score = 59.7 bits (143), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 7/151 (4%) Query: 3 SWYLLYCKRGQLQRAQEHLER-QAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 +WY + K A +L + Q V P + K R ++E LFPNY+F F Sbjct: 33 AWYCVRSKPKHEHIAAANLSKLQVVETFNPSLRSRKATRRGPVWMTESLFPNYIFARFPF 92 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT--PYPGDKVIIT 119 E + + TRGVS V FG VP+ VI +L P + + ++ P GD+V IT Sbjct: 93 EQMF-DEVKYTRGVSSLVHFGTGYPEVPADVIEELRRNFPANELKLSSEVPTAGDQVTIT 151 Query: 120 EGAFEGFQAIF--TEPDGEARSMLLLNLINK 148 A G Q + T P + R +LL+++ + Sbjct: 152 SRALFGLQGVVLRTMP-AQRRVQVLLDMLGQ 181 >UniRef50_Q7BQV7 Putative NusG-type transcription antiterminator n=1 Tax=Serratia entomophila RepID=Q7BQV7_9ENTR Length = 160 Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 43/157 (27%), Positives = 71/157 (45%), Gaps = 12/157 (7%) Query: 1 MQSWYLLYCKRGQ--LQRAQEHLERQAVNCLAPMITLEKIVR---GKRTAVSEPLFPNYL 55 M+ WYL K G+ + +AQ LER + +P++ + G+ V E +FP YL Sbjct: 1 MERWYLACHKAGKDNVFKAQMTLERMNIMAFSPVMRAYRPRSDRPGQLRPVMEQMFPGYL 60 Query: 56 FVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDK 115 F+ FD E+ H++ I G+SH VRF + AV+ + + P + + PG + Sbjct: 61 FIFFDTEIHHSSKIELCPGISHLVRFAGEITPIRDAVVDDV-MQLPVCVQAFSRKNPGKR 119 Query: 116 ------VIITEGAFEGFQAIFTEPDGEARSMLLLNLI 146 + + QA+ DG+ RS L + Sbjct: 120 RWDKGTTPLNHQQRQQIQALVDTKDGDVRSALFFAFV 156 >UniRef50_Q9EUG2 Actx protein n=1 Tax=Escherichia coli RepID=Q9EUG2_ECOLX Length = 163 Score = 58.9 bits (141), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 67/157 (42%), Gaps = 20/157 (12%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVR-GKRTAVSE---PLFPNYLFVEF 59 WY+L + +HLER + PM T EK R K+ + E PLFP YLF++ Sbjct: 3 WYVLQFTTTRFAAVFKHLERLNFSYYCPMAT-EKYRRPDKQLSYRERLTPLFPGYLFIQA 61 Query: 60 DPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIIT 119 D + +HTTTI F+ FG P VP + + G++ ++ Sbjct: 62 DFDEVHTTTITGLPHTQRFIAFGGEPLAVPDDEVCNVQ--------------KGERNLLN 107 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLIN-KEIKHSVK 155 + I + RSM +LN I K + H +K Sbjct: 108 FDEYPRLVEIMMMSEPRMRSMAMLNYITEKSLSHKMK 144 >UniRef50_Q01TC5 NusG antitermination factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01TC5_SOLUE Length = 193 Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 41/161 (25%), Positives = 64/161 (39%), Gaps = 4/161 (2%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 W+ L Q LE + C P+ + + R + + P FP Y+F D V Sbjct: 19 WFALSVTPKLTQLVLMALEHKGYECFTPLQSSTRKRRDQVADMQVPAFPGYVFARID--V 76 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY--PGDKVIITEG 121 + T GV V +G PA V I L + + PY GD+V + EG Sbjct: 77 RFRLPVLVTPGVRGIVGYGRQPAPVDDGEIFALRRVMQSQLPAKSAPYLRTGDRVQLVEG 136 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G + + G R ++ + LIN+ + V++ R L Sbjct: 137 PLSGLTGLLIQQKGANRVLVQVTLINQALAVDVESAWVRSL 177 >UniRef50_C0QI35 Transcriptional antiterminator (SH3-like protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI35_DESAH Length = 174 Score = 56.6 bits (135), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 8/146 (5%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVE--F 59 +SWY L K ++++++ P I + ++ + PLFP YLFV Sbjct: 5 KSWYTLLTKSRFENVVFNDIQKKSIEVFLPKIKKRSQRKDRKLMIDVPLFPGYLFVNITL 64 Query: 60 DPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK--DIVDPA--TPYPGDK 115 DP V H + + T G + + + P VPSA I L + D+V T G++ Sbjct: 65 DP-VTHLSVVKTT-GAVRLLGYSSGPVPVPSAHIESLKIVTGTGLDVVSGTINTLQKGER 122 Query: 116 VIITEGAFEGFQAIFTEPDGEARSML 141 V++ G F G + F G+ R ++ Sbjct: 123 VLVVRGPFSGVKGEFLRHKGKDRVII 148 >UniRef50_D2LJZ0 NusG antitermination factor n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJZ0_RHOVA Length = 169 Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 42/127 (33%), Positives = 55/127 (43%), Gaps = 6/127 (4%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVS--EPLFPNYLFVEFDP 61 W +L + A E+L RQ PM K VR R A PLFP Y+FVE Sbjct: 9 WVVLTTHPHRENFAVENLARQDFTAYCPMTV--KHVRHARRAYDAPRPLFPGYVFVEHQS 66 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD-PATPY-PGDKVIIT 119 + I T GV +R G SPA++P I L + ++ P P G V I+ Sbjct: 67 AFQYLRPILGTYGVRSILRIGDSPAVLPVGFIESLKAREMDGVISKPEAPLKAGQTVTIS 126 Query: 120 EGAFEGF 126 G F+G Sbjct: 127 GGPFDGL 133 >UniRef50_C7PUS0 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PUS0_CHIPD Length = 174 Score = 55.8 bits (133), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 38/161 (23%), Positives = 68/161 (42%), Gaps = 4/161 (2%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY+ Y + ++ + + Q + P+ + + + PLFPNY+FV+ + Sbjct: 15 WYVAYTRANFERKVAKDIVDQQIEHYLPLRRETRKWSDRLKQIEVPLFPNYIFVKIKLQ- 73 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVY--KPKDIVDPATPYPGDKVIITEG 121 H I GV V F P V I + + +DI GD+V IT+G Sbjct: 74 -HKVNILGIPGVLSLVSFSGQPVSVSEREIQHIRKIEERGQDIALEYYYCVGDRVRITQG 132 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 F G + I G+ R +L L I++ + ++ + ++ Sbjct: 133 IFTGMEGILLRKSGQMRFVLKLPAISQAVSVEIEGDQLERI 173 >UniRef50_A8T9L1 Putative uncharacterized protein n=1 Tax=Vibrio sp. AND4 RepID=A8T9L1_9VIBR Length = 152 Score = 55.8 bits (133), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 32/116 (27%), Positives = 55/116 (47%), Gaps = 8/116 (6%) Query: 1 MQSWYLLYCKRGQLQRAQ--EHLERQAVNCLAPMITLEKIVR---GKRTAVSEPLFPNYL 55 M++WYL+YC +R L V P++T K + GK ++ LF NY+ Sbjct: 1 MKNWYLVYCNVKNSRRDVLIRFLNSFGVEVFNPIMTYYKARKDRPGKFRKQTKSLFSNYM 60 Query: 56 FVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYK---PKDIVDPA 108 F++FD + + G+S+F+R A +P +I L + + PK ++ P Sbjct: 61 FIQFDCTKFSFSKFDNIEGISYFLRSSGQIATIPEPLIENLRLSQAMLPKSVLSPC 116 >UniRef50_Q6AIA2 Related to transcriptional activators n=1 Tax=Desulfotalea psychrophila RepID=Q6AIA2_DESPS Length = 193 Score = 54.7 bits (130), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 69/159 (43%), Gaps = 10/159 (6%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSE--PLFPNYLFVEFDP 61 WY + K + + A+ + +RQ P+ L K V R+ + FP YLF+ P Sbjct: 29 WYAIRTKNKKEEVAKFNYQRQGYTVYLPL--LRKTVHHARSTTEKLVAFFPGYLFLNLAP 86 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY------PGDK 115 + T I +TRG + FG S +P VI L + K + A PG Sbjct: 87 AEQNWTAIASTRGSLGALCFGDSYIEIPGWVISDLKAREDKGLSILAKDLIKENLTPGSV 146 Query: 116 VIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSV 154 V + E +A+ G +LLN++++++K +V Sbjct: 147 VTVNIPGLESVEAVVYSIRGSENVDVLLNILSRQVKTTV 185 >UniRef50_Q3AU98 Transcription antitermination protein nusG n=6 Tax=Chlorobiaceae RepID=Q3AU98_CHLCH Length = 197 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/156 (23%), Positives = 72/156 (46%), Gaps = 4/156 (2%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 Q+WY +Y + ++ + L + VN P+ + ++ VSEPLF Y+FV Sbjct: 8 QNWYAVYVRSRYEKKVYQALLEREVNSFLPLYETIRQWSDRKKKVSEPLFRGYVFVNIAM 67 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLS--VYKPKDIVDPATPYP-GDKVII 118 + + + T GV F+ G P+++ I L V +P+ I P G KV + Sbjct: 68 QQ-ESIKVLDTEGVVKFIGIGRKPSVIAEREIEWLKKLVREPEAISRTVASLPAGQKVRV 126 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSV 154 G F+ + + + E++ ++ + I + ++ S+ Sbjct: 127 IAGPFKDMEGVVVKEGRESQIVIYFDSIMQGVEVSI 162 >UniRef50_A5FN19 Transcription antitermination protein nusG n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FN19_FLAJ1 Length = 154 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 34/133 (25%), Positives = 63/133 (47%), Gaps = 5/133 (3%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 +WY++Y K ++ E L + + C P+IT K ++ V PLF +Y+F++ + Sbjct: 2 NWYVVYTKPKWEKKVAEKLTQIGIECYCPLITQVKQWSDRKKKVEMPLFNSYVFIQIEDA 61 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL-SVYKPKDIVDPATP--YPGDKVIIT 119 ++ G+ ++ + PA+V I+ + + K +I D + GDK+ + Sbjct: 62 --DRNSVFEVAGIVRYLFWLGKPAVVRDEEINVIKNSLKASNIADISVSQIQVGDKIKLE 119 Query: 120 EGAFEGFQAIFTE 132 GAF AI E Sbjct: 120 TGAFSNQNAIVQE 132 >UniRef50_C7PS65 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PS65_CHIPD Length = 170 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 31/153 (20%), Positives = 68/153 (44%), Gaps = 4/153 (2%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 ++ WY LY ++ L V PM + + ++ V PLFP+Y+FV + Sbjct: 5 IEGWYALYTMPRHEKKLHTRLSELNVTSFLPMTRMLRTWHDRKKYVEMPLFPSYIFVYLN 64 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDI-VDPATPY--PGDKVI 117 + H + T G ++V+ G + + +IH + + + ++ + Y PG +++ Sbjct: 65 -NIEHYYNVLNTNGALYYVKTGNELSRISEQIIHYIRIVSEQSTGIELSADYFPPGKELL 123 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEI 150 I+ G GF + ++ ++L+ + + Sbjct: 124 ISSGPLAGFSCEVVSYKNSEKILVRVSLLQRSL 156 >UniRef50_A3EVT3 Transcription antitermination protein nusG n=4 Tax=Bacteria RepID=A3EVT3_9BACT Length = 184 Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 38/159 (23%), Positives = 71/159 (44%), Gaps = 22/159 (13%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAV---------NCLAPMITLEKIVRGKRTAVSEPLFP 52 ++WY+++ G R + +E + V + P+ + ++ GK+ S +FP Sbjct: 11 KNWYVIHTYAGFENRVKTSIEERVVLKDLADIVGQVVVPIQNVTELKEGKKKVSSRKVFP 70 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYP 112 Y+ VE +P I AT V+ F+ G +P + S + +L D ++ T P Sbjct: 71 GYVLVEMEPTEEAIQFILATPKVTGFLGNGTTPIPMSSREVSELF-----DRIESGTAMP 125 Query: 113 --------GDKVIITEGAFEGFQAIFTEPDGEARSMLLL 143 + V IT+G F+GF + +E D + + +L Sbjct: 126 SPSQHFSESETVRITDGPFQGFSGMISEVDNDHGKLKVL 164 >UniRef50_C9RQP0 Transcription antitermination protein nusG n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQP0_FIBSS Length = 179 Score = 52.4 bits (124), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 66/144 (45%), Gaps = 15/144 (10%) Query: 4 WYLLYCKRGQ----LQRAQEHLERQAVN-----CLAPMITLEKIVRGKRTAVSEPLFPNY 54 WY ++ GQ +R ++ +ER+ V + P + VRGKR + LFP Y Sbjct: 5 WYAVHTFTGQENNIKKRLEQMIEREGVQDKFGRIIVPTREVVSNVRGKRRISVQNLFPAY 64 Query: 55 LFVEFDPEVIHTTTINATRGVSHF---VRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY 111 + +E + + + ++ GV+HF R P + + + +L P++ ++ Sbjct: 65 IIIEMELDELTQHLVSTINGVTHFGGMTRASRVPIPLRQSEVDRLLGVDPENSIEGEIQI 124 Query: 112 P---GDKVIITEGAFEGFQAIFTE 132 P G+ V I EG F+GF + E Sbjct: 125 PYTIGENVCIKEGPFKGFVGVVDE 148 >UniRef50_A3J1W0 Putative transcriptional regulator n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J1W0_9FLAO Length = 154 Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 65/147 (44%), Gaps = 6/147 (4%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 +WY LY K Q+ + L+ + P++ K ++ V PL P+Y+FV+ + + Sbjct: 2 NWYALYTKPRNEQKVAQKLQALGIIAYCPLVLSSKQWSDRKKKVLVPLLPSYVFVQIEEQ 61 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVP----SAVIHQLSVYKPKDIVDPATPYPGDKVII 118 + + GV +V + PAI+ A+ QL P + T + + I Sbjct: 62 --NRKDVFQVGGVVQYVFWLGKPAIIKPNEIEALKQQLDSSIPVVHFEMTTWRSNETIQI 119 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNL 145 TEG F+G AI + +LL +L Sbjct: 120 TEGVFKGQDAIVDKISTNKVRLLLKSL 146 >UniRef50_Q48B18 Transcriptional regulator n=18 Tax=Pseudomonas syringae group RepID=Q48B18_PSE14 Length = 249 Score = 52.0 bits (123), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 35/87 (40%), Positives = 43/87 (49%), Gaps = 6/87 (6%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAP-MITLEKIVRGKRTAVSEP---LFPNYLF 56 M++W +L Q +ER V +P IT K R R + E LFP YL Sbjct: 73 MKNWRVLMHNSSVYQSLITSIERLDVEVYSPESITYRK--RPDRPSSVETKVRLFPGYLL 130 Query: 57 VEFDPEVIHTTTINATRGVSHFVRFGA 83 + FDPEV HTTTI A G FV+FG Sbjct: 131 LRFDPEVTHTTTITALNGARGFVQFGG 157 >UniRef50_B8FH43 NusG antitermination factor n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FH43_DESAA Length = 178 Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 31/150 (20%), Positives = 59/150 (39%), Gaps = 1/150 (0%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + WY LY K +L +++ P + + + +R + P+FP YLFV Sbjct: 10 KQWYALYTKSRHEACVNNYLAARSIESFYPQMRILSRRKDRRKMIDVPMFPGYLFVRAAL 69 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY-PGDKVIITE 120 +I G + +P I L + K+ ++ Y GD V+I Sbjct: 70 RSRQHLSILKAPGAVTLIGNTRGAIAIPEDTISSLRIVSQKEALETGPCYHAGDLVLIVS 129 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEI 150 G F G +F G + ++ ++ + + + Sbjct: 130 GPFAGVTGVFMRNKGGGKILVNIDALGQSV 159 >UniRef50_Q8R8A2 Transcription antitermination protein nusG n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8R8A2_THETN Length = 179 Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 24/161 (14%) Query: 4 WYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPNY 54 WY+++ +R +EH+ A + P+ RGK + E +FP Y Sbjct: 16 WYVVFTYHNAEKRVEEHINSLAKTEKYDGLIIKAEVPVQKRTVSRRGKIKEIEEKIFPGY 75 Query: 55 LFVE--FDPEVIHTTTINATRGVSHFVRFGASPA-IVPSAVIHQLSVYKPKDIVDPATP- 110 +FV+ PEV+ I GV+HFV G P I P V K I D + Sbjct: 76 VFVKAVMTPEVM--AAIRRINGVAHFVGGGNEPVPITPEEV-------KRARIQDDLSEE 126 Query: 111 -YPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEI 150 GD V+IT+G FE F + +G + + L+L ++E+ Sbjct: 127 FKAGDTVMITDGPFENFIGKIIKIEGR-KINIALSLFDREM 166 >UniRef50_C6Y0K9 NGN domain protein n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y0K9_PEDHD Length = 168 Score = 51.6 bits (122), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 3/162 (1%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 ++WY++ ++A +L + P+ +++ ++ + PLFPNYLF+ + Sbjct: 8 KNWYVVVTYPNLERKALLNLLKNNFIAFLPLQKVQRKWSDRKKTIEIPLFPNYLFININE 67 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLS-VYKPKDIVDPATPYPGDKVIITE 120 + GV +V FG PA + I + + + D+ + GD V I Sbjct: 68 KDRFEAL--DIYGVKRYVTFGGRPAFISETDILNIKRIVESVDLYIEHSLVKGDAVKIIG 125 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G F+ I + G+AR + + +N+ + + +T RK+ Sbjct: 126 GPFKDMIGILFKKSGQARFGIRVESMNQTLSIEICHTLIRKV 167 >UniRef50_C2HWG3 Transcriptional activator RfaH n=2 Tax=Vibrio RepID=C2HWG3_VIBCH Length = 130 Score = 51.2 bits (121), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 19/50 (38%), Positives = 35/50 (70%) Query: 110 PYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 P G V + G F G +AI+ EPDG+ RS++L+ +I++++ S++NT++ Sbjct: 78 PEKGQTVRVARGQFAGIEAIYLEPDGDTRSIMLVKMISQQVPMSIENTDW 127 >UniRef50_C4Z2Q9 Transcription antitermination protein nusG n=20 Tax=Bacteria RepID=C4Z2Q9_EUBE2 Length = 178 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 38/155 (24%), Positives = 70/155 (45%), Gaps = 14/155 (9%) Query: 4 WYLLYCKRGQLQRAQEHLER---------QAVNCLAPMITLEKIVRGKRTAVSEPLFPNY 54 WY+++ G + + ++E+ Q + + P+ T+ +I G + A + +FP Y Sbjct: 6 WYVVHTYSGYENKVKANIEKTVENRNLHDQILEVIVPLETVVEIKDGSKKAAQKKMFPGY 65 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSV-YKPKDIVDPATPYPG 113 + V+ + TRGV+ FV G+ P + I L + + + V P + G Sbjct: 66 VLVKMVMNDDSWYVVRNTRGVTGFVGPGSKPVPLTPTEIKNLGISLEEEQEVKPVIQFAG 125 Query: 114 ---DKVIITEGAFEGFQAIFTEPDGEARSMLLLNL 145 DKV+I GA+E T + E + L +N+ Sbjct: 126 KVGDKVMILSGAWEDTVGEITNIN-EGKQCLTINV 159 >UniRef50_B0K4N5 Transcription antitermination protein nusG n=9 Tax=Thermoanaerobacter RepID=B0K4N5_THEPX Length = 179 Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 35/136 (25%), Positives = 70/136 (51%), Gaps = 9/136 (6%) Query: 1 MQSWYLLYCKRGQLQRAQEHLE---RQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFV 57 M+ WY+++ + G + ++ +E ++ V L P + + V+G+ + LFP Y+FV Sbjct: 1 MKKWYVIFTRSGYENKVRDIIENCFKEEVKLLIPKRKIIERVKGQPVEKIKLLFPGYVFV 60 Query: 58 --EFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIH-QLSVYKPKDIVDPATP-YPG 113 E ++ + + RG+ F++ G PA V + LS+ K D++D + G Sbjct: 61 NAEMSDDLYYKISEVLKRGI--FLKEGKRPAFVKEEEMKIILSLTKNSDLIDLSKGIMEG 118 Query: 114 DKVIITEGAFEGFQAI 129 ++V I EG +G++ + Sbjct: 119 ERVKIIEGPLKGYEGL 134 >UniRef50_B4D2H1 Transcription antitermination protein nusG n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2H1_9BACT Length = 186 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 38/127 (29%), Positives = 56/127 (44%), Gaps = 13/127 (10%) Query: 8 YCKRGQLQRAQEHL------ERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 YC R Q + EH+ + + + P + +++ R +E LFPNYLF F+ Sbjct: 21 YCLRAQPK--HEHIAAARLRQCEEIQVFCPRVRIQRSTRRGLVWFTEALFPNYLFARFEW 78 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY---PGDKVII 118 H + + +GVS VRFG VP+ + L Y +D + GD V I Sbjct: 79 VQSH-ALVRSCQGVSGIVRFGDHVPEVPAGTLDDLRAYM-EDAELKTVSFNIDEGDDVEI 136 Query: 119 TEGAFEG 125 EG F G Sbjct: 137 VEGPFRG 143 >UniRef50_C6XVK8 NGN domain protein n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XVK8_PEDHD Length = 176 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 23/164 (14%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 ++ WY +Y + ++A + L + + P+ + ++ V EPL +YLFV Sbjct: 10 IKKWYPVYTQSRAEKKAYQALLSKGIEAYLPLQRQLRQWSDRKKWVEEPLIKSYLFVHIA 69 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY--------- 111 + T + T G+S F+ F A +P I +L + A+PY Sbjct: 70 RQ--QQTEVLMTTGISRFIYFSGKIAAMPDRQIEELKLL-------LASPYELEITEERL 120 Query: 112 -PGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSV 154 PG+K+ I G +G + E + + +L L +I HS+ Sbjct: 121 LPGEKIEIKAGPLKGIRGEIIEYRSQKQLLLRLG----DISHSI 160 >UniRef50_A7AFP3 Putative uncharacterized protein n=2 Tax=Parabacteroides RepID=A7AFP3_9PORP Length = 180 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/126 (28%), Positives = 61/126 (48%), Gaps = 12/126 (9%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEF-DP 61 SWY+LY ++ ++ + V C P+ ++ + V PLF +YLFV DP Sbjct: 24 SWYVLYTAPRAEKQVRDRINALGVECWLPLHRAPRVWSDRVKIVELPLFNSYLFVRCTDP 83 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY---PGDKVII 118 E+ + T + GV+ V + PA+V I + +D +D A+ + PG++V I Sbjct: 84 ELRNLTRVY---GVARIVYYNGKPAVVRQKEIDAI-----QDFLDQASEHALCPGEEVEI 135 Query: 119 TEGAFE 124 GA + Sbjct: 136 LCGAMK 141 >UniRef50_C6QI43 NusG antitermination factor n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QI43_9RHIZ Length = 175 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 39/142 (27%), Positives = 63/142 (44%), Gaps = 6/142 (4%) Query: 17 AQEHLERQAVNCLAPMITLEKIVRGKRTAVSE--PLFPNYLFVEFDPEVIHTTTINATRG 74 A +L++Q AP+I K R R + PLFP YLF + + I +T G Sbjct: 28 AASNLKKQGYEIYAPVI--RKTTRHARISRESLTPLFPGYLFARWTAPDMRWRPILSTVG 85 Query: 75 VSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYP--GDKVIITEGAFEGFQAIFTE 132 + VR G P+ + A++ L + ++ A G V G F+G A E Sbjct: 86 IRSIVRNGNEPSRLDGAIVDALKAREKDGVIVRAESQREIGQIVRFARGPFDGIAAEIVE 145 Query: 133 PDGEARSMLLLNLINKEIKHSV 154 + R ++L+ L+N+ K +V Sbjct: 146 LCDKDRLVVLMTLLNRPTKVTV 167 >UniRef50_Q2NTN8 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NTN8_SODGM Length = 147 Score = 50.4 bits (119), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/100 (33%), Positives = 44/100 (44%), Gaps = 5/100 (5%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLE----KIVRGKRTAVSEPLFPNYLF 56 + SWYLL K HL V PMI + V R +S P+FP YLF Sbjct: 8 IMSWYLLRFKATLFNMVFNHLAASGVYYFCPMIETQYRRPDSVASFRKRLS-PVFPGYLF 66 Query: 57 VEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL 96 V D + H ++A R + + FG P+ + AVI L Sbjct: 67 VNLDFDHCHPQKLSAHRHIYGLINFGQGPSPIDDAVIDLL 106 >UniRef50_B9YBP8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YBP8_9FIRM Length = 171 Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 35/149 (23%), Positives = 70/149 (46%), Gaps = 10/149 (6%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD-- 60 +WY+L+ + G ++ ++ Q +N P + + +G V + +FP YLF+E + Sbjct: 2 NWYVLFVRGGMEEKIRDFFLSQGLNAFIPKMKVVFRKQGISELVEKIMFPGYLFIESELE 61 Query: 61 ----PEVIHTTTINATRGVSHFVRFG--ASPAIVPSAVIHQLSVYKPKDIVDPATPY-PG 113 E I + T G+ ++F +PA+ + + +++ +T G Sbjct: 62 QAAMDEQIKELRMQKT-GIVKLLKFDKEGTPALRSEEKDYLERLLGKNKVLEHSTGLIQG 120 Query: 114 DKVIITEGAFEGFQAIFTEPDGEARSMLL 142 ++VIITEG +GF++ + D R +L Sbjct: 121 NQVIITEGPLQGFESQIVKIDRHKRRAVL 149 >UniRef50_Q6VE90 Orf37 n=2 Tax=Pseudomonas syringae group RepID=Q6VE90_PSESY Length = 175 Score = 49.7 bits (117), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 1/56 (1%) Query: 41 GKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL 96 G RT+ ++ LFP YLFV+ +PEV+HT+ + GV FV FG A + +I + Sbjct: 45 GVRTSETQ-LFPGYLFVKLNPEVLHTSIVLQVSGVKKFVSFGGVLATISDCLIEAI 99 >UniRef50_A5D5K3 Transcription antitermination protein nusG n=7 Tax=Bacteria RepID=A5D5K3_PELTS Length = 175 Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 41/175 (23%), Positives = 79/175 (45%), Gaps = 17/175 (9%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQ--AVN-------CLAPMITLEKIVRGKRTAVSEPLFP 52 + WY+++ G + + +LE++ ++N L PM +I GK+ +FP Sbjct: 3 KKWYVVHTYSGYENKVKANLEKRIDSMNMEDKIFRILVPMEDEVEIKDGKKKVSKRKIFP 62 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSA----VIHQLSVYKPKDIVDPA 108 Y+ VE + T GV+ FV G+ P + A +I Q+ V +P+ VD Sbjct: 63 GYVLVEMIMTDDSWYVVRNTPGVTGFVGSGSRPIPLNDAEARQIIRQMGVEEPRTRVDFT 122 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162 G+ + + G FE F E + E ++ +++++ +E + T+ K+ Sbjct: 123 V---GENIRVISGPFENFIGQIEEINMEKSKVKVMISMFGRETPVELDFTQVEKI 174 >UniRef50_A1VS68 NusG antitermination factor n=2 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VS68_POLNA Length = 184 Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 36/150 (24%), Positives = 66/150 (44%), Gaps = 5/150 (3%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 W+L + + A ++L++Q + P+ K + AV EP+F Y+F Sbjct: 23 WFLAHTRPRLETVALQNLQQQGFDVYLPLYKRLKKIDAGMQAVFEPMFSRYVFFRTTSLA 82 Query: 64 IHTTTINATRGVSHFVRFGASPAIV-PSAV--IHQL-SVYKPKDIVDPATPYPGDKVIIT 119 + +TRGV+ V FG+ A + P + I QL + D+ + +T PG V Sbjct: 83 QSIAPVRSTRGVAQIVSFGSEFATIRPDMLDAIRQLEQLRNAADVAELSTLRPGHLVRFC 142 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLINKE 149 A G + + + R +LL ++ ++ Sbjct: 143 NSALSGLEGV-VKSVSSCRVAVLLEIMGRQ 171 >UniRef50_B9KYX2 Transcription antitermination protein nusG n=5 Tax=Bacteria RepID=B9KYX2_THERP Length = 198 Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 68/163 (41%), Gaps = 21/163 (12%) Query: 3 SWYLLYCKRGQLQRAQEHL---------ERQAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+L+ G + +++L + + PM +I G+R V +FP Sbjct: 27 EWYVLHTYSGYENKVRQNLLHRVETMDVADKVFEVVIPMQEEIEIRGGQRHTVQRKVFPG 86 Query: 54 YLFVE--FDPEVIHTTTINATRGVSHFVRFGASPAIV----PSAVIHQLSVYKPKDIVDP 107 Y+ V D E H + T GV+ FV G P + A+I +PK Sbjct: 87 YVLVRMILDDESWH--VVRNTPGVTGFVGVGNRPVPLDRAEAEAIIRGAKAEQPK---VR 141 Query: 108 ATPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKE 149 T PGD V I +G F F+ + E D E + +L++ +E Sbjct: 142 MTLLPGDVVRIIDGPFTDFRGVVDEVDNEKGKVRVLVSFFGRE 184 >UniRef50_A9DI26 NusG antitermination factor n=1 Tax=Kordia algicida OT-1 RepID=A9DI26_9FLAO Length = 170 Score = 47.4 bits (111), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/164 (21%), Positives = 71/164 (43%), Gaps = 8/164 (4%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD-PE 62 W++LY K ++ LE ++ P + ++ + PLFP+Y+FV + P Sbjct: 7 WHVLYVKSRWEKKVHNSLENISIKSFLPKTKTVQQWSDRKKTILTPLFPSYVFVYIESPL 66 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVY-KPKDI----VDPATPYPGDKVI 117 H + G ++RFG A V I+Q+ + K+I ++P P G+ Sbjct: 67 DFHKAL--SVDGACCYIRFGKEYARVTEKEINQIKLLVDSKEIEEIELNPTFPKIGEMKK 124 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 I +G G E + + ++ ++ + + I ++ F+K Sbjct: 125 IEQGPLSGLDCEIIEAENYNKIIVRISSLRQNILATIPLNSFKK 168 >UniRef50_C7PT75 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PT75_CHIPD Length = 174 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 33/153 (21%), Positives = 71/153 (46%), Gaps = 8/153 (5%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP- 61 WYLLY + Q R + + + + P T+ + + + PLFP+Y+FV Sbjct: 7 GWYLLYTRPRQEARVAKEMADKNIQIYLPYTTVTRRWTDRIKVLEVPLFPSYVFVHLTNM 66 Query: 62 -EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL-SVYKPKDIVDPATP--YPGDKVI 117 E + + + + +VRFG A V A + + ++ K + ++ ++ PG +++ Sbjct: 67 HEFYYGSNLESA---CSYVRFGNEVARVSDAAVDAVRTIAKAGNNLEVSSERFTPGQQMM 123 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEI 150 I EG G + G+ + ++ ++++ + I Sbjct: 124 IKEGPLCGLNCEVIQYKGKDKILVRVHMLQRSI 156 >UniRef50_A5TS63 Transcription antitermination protein nusG n=10 Tax=Fusobacterium RepID=A5TS63_FUSNP Length = 193 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/179 (24%), Positives = 78/179 (43%), Gaps = 36/179 (20%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQ---------AVNCLAPMITLEKIVRGKRTAVSEPLF 51 ++ W++++ G ++ + LE++ N L P L +IVRGK + LF Sbjct: 6 VRKWFMIHTYSGYEKKVKTDLEQKMETLGFREVVTNILVPEEELTEIVRGKPKKIYRKLF 65 Query: 52 PNYLFVEF---------------DPEVIHTTTINATRGVSHFVRFGASPAIVPSA----V 92 P Y+ +E DP V + + T GV+ FV G+ P + + Sbjct: 66 PAYVMLEMEATREENEHGISYKVDPRVWY--EVRNTNGVTGFVGVGSDPIPMEEEEVKNI 123 Query: 93 IHQLSVYKPKDI--VDPATPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINK 148 + + V PK+ +D A GD V I +G+F+ + E D E R +++++ + Sbjct: 124 FNIIGVKTPKETIKIDFA---EGDYVKILKGSFKDQEGQVAEIDNEHGRVKVMVDIFGR 179 >UniRef50_A3XR75 NusG antitermination factor n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XR75_9FLAO Length = 158 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 36/146 (24%), Positives = 64/146 (43%), Gaps = 5/146 (3%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 +WY+LY K ++ LE+ V P + ++ ++ + PLF +Y+FV P Sbjct: 2 NWYVLYVKPQSEKKVASALEKLGVKVFCPTLEEVRVWSDRKKKIQVPLFKSYVFVCL-PN 60 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA---TPYPGDKVIIT 119 + A GV ++ + PA+V I + + + V T PG +V I Sbjct: 61 T-ERQQVFAVPGVVRYLFWLGKPAVVRDEEIAAIQDWLSDEAVADVQVRTYTPGTEVKIA 119 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNL 145 G F+G + I E + M++ +L Sbjct: 120 AGHFKGQKGIVQEVGRKRLKMVIKSL 145 >UniRef50_D0WPF7 Transcription antitermination protein nusG n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WPF7_9ACTO Length = 274 Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 48/188 (25%), Positives = 77/188 (40%), Gaps = 34/188 (18%) Query: 4 WYLLYCKRGQLQRAQEHLE--RQAVNCL-------APMITLEKIVRGKRTAVSEPLFPNY 54 WY+L+ G +R ++ LE ++N PM + +I RG+R VS P Y Sbjct: 89 WYVLHTYSGYEKRVKQDLEVRMHSMNMEDYIFQIEVPMEEVFEIRRGQRKLVSRVRMPGY 148 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASP-AIVPSAVIHQLS---------------- 97 + + D + +T GV+ FV G +P A+ + V+ L+ Sbjct: 149 VLIRMDLTDDSWRVVQSTNGVTGFVGNGRTPVALSENEVVSMLTPVIEAEAAAEAVAAGK 208 Query: 98 VYKPKDIVDPATPYP---GDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHS 153 P PAT P GD V +T + G A +E D R +L+ L+ +E Sbjct: 209 AASPT----PATLSPYAVGDAVTLTSEPWAGMPATVSEVDAANQRLTVLMTLVGQETPVE 264 Query: 154 VKNTEFRK 161 + + RK Sbjct: 265 LSFNQVRK 272 >UniRef50_Q54017 AnfA1 n=2 Tax=Serratia entomophila RepID=Q54017_9ENTR Length = 154 Score = 46.6 bits (109), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 31/105 (29%), Positives = 44/105 (41%), Gaps = 10/105 (9%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAV--NCLAPMITLEKIVRGKRTAVSEPLF-------- 51 + WYL+ C G++ Q+ LE + AP + G + F Sbjct: 3 KKWYLIRCNYGKIDLGQKSLETYGLFEGFPAPNLKPSLEFEGFYLTFQKNFFRKGMVYFS 62 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL 96 P YLFV FD + I + I GV FVRFG +P VI ++ Sbjct: 63 PPYLFVRFDIDHIPISKIQHAIGVKGFVRFGGGIKSIPDIVIGKI 107 >UniRef50_D2QI92 NusG antitermination factor n=2 Tax=Spirosoma linguale DSM 74 RepID=D2QI92_9SPHI Length = 161 Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 32/125 (25%), Positives = 55/125 (44%), Gaps = 5/125 (4%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY+L K + + + L + + P+I ++ + V EPLFP Y FV Sbjct: 3 WYVLCTKPRKEKFLAKLLAEKQIEVYCPLIRRKRRWSDRIKTVEEPLFPCYCFVNVKES- 61 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK---DIVDPATPYPGDKVIITE 120 + T G+ ++ + PAIV I + + + D++ + P DKV+I Sbjct: 62 -ERADVFVTPGIVRYLYWLGKPAIVKDKEIDLIKLTLNQFDHDLIHLESFNPKDKVVINS 120 Query: 121 GAFEG 125 G+F G Sbjct: 121 GSFMG 125 >UniRef50_B4S8Z4 NusG antitermination factor n=4 Tax=Chlorobiaceae RepID=B4S8Z4_PROA2 Length = 172 Score = 46.2 bits (108), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 33/159 (20%), Positives = 71/159 (44%), Gaps = 5/159 (3%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY +Y + ++ L+ + + P++ + ++ VS PLF Y+FV Sbjct: 9 WYAVYVRSRFEKKVHLLLQEKGIVSFLPLVDTWRQWSDRKKKVSMPLFRGYVFVRIHYRQ 68 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK-DIVDPATPY--PGDKVIITE 120 H ++ T GV F+ G + +++ I + + + D+ P PG +V + Sbjct: 69 DHPFVLD-TDGVVKFIGIGRAASVIRDRDIEWIKILTGEPDVRKEVLPLLPPGKQVKVIA 127 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 G F G + + + E++ ++ I + I+ ++ N E+ Sbjct: 128 GPFVGLEGVVRKDGRESKLVVYFESIMQGIEVTI-NAEY 165 >UniRef50_Q1RHC5 Transcription antitermination protein nusG n=15 Tax=Rickettsia RepID=NUSG_RICBR Length = 190 Score = 45.8 bits (107), Expect = 5e-04, Method: Compositional matrix adjust. Identities = 32/145 (22%), Positives = 63/145 (43%), Gaps = 10/145 (6%) Query: 2 QSWYLLYCKRGQLQRAQ----EHLERQAV-----NCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY+++ G R + E + +Q + + L P+ + ++ R K V + L P Sbjct: 18 KKWYVIHTASGAENRIKRIMLERISKQKMSDFFDDILVPVFGVSEVKRSKNVKVEKKLMP 77 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSV-YKPKDIVDPATPY 111 +Y+ ++ + + GV+ F+ +P + + I + + + K+ D Sbjct: 78 SYILIKMNMTDKSWHLVKNIPGVTGFLGSKTTPKALTESEIQNIRLETEAKEAKDAKLYE 137 Query: 112 PGDKVIITEGAFEGFQAIFTEPDGE 136 G+ V +TEG FE F E D E Sbjct: 138 VGEIVTVTEGPFETFTGTVEEVDQE 162 >UniRef50_B0ZDY9 ActX n=5 Tax=Enterobacteriaceae RepID=B0ZDY9_ECOLX Length = 172 Score = 45.4 bits (106), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 30/97 (30%), Positives = 44/97 (45%), Gaps = 2/97 (2%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSE--PLFPNYLFVEF 59 + +YLL C Q L R + P+I R + P+FP Y+FV Sbjct: 5 KQFYLLQCSPHFHQSVLLQLSRSGIAYYNPVIRTFYKRRDCSAYRGQIMPMFPGYVFVLL 64 Query: 60 DPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL 96 D EV+H + + V V FG PA VP +VI+++ Sbjct: 65 DFEVVHPSCFTRMKNVYGLVSFGEYPAEVPLSVINEV 101 >UniRef50_B8E0K4 Transcription antitermination protein nusG n=2 Tax=Dictyoglomus RepID=B8E0K4_DICTD Length = 176 Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 40/172 (23%), Positives = 74/172 (43%), Gaps = 15/172 (8%) Query: 3 SWYLLYCKRGQLQRAQ---------EHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 W++++ G + + HLE + + P + + GK+ + +FP Sbjct: 5 KWFVVHTLAGHEHKVKAILERQVKLNHLEDKVFEIVVPEEKVMTVKGGKKRIQVKKVFPG 64 Query: 54 YLFVEF--DPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVY-KPKDIVDPATP 110 YLF+ D +VI I T GV+ FV P+ + H + + + K+I Sbjct: 65 YLFIRMIEDEDVIR--MIRNTTGVTGFVGTPGRPSTLNPQEEHWIRRFLEQKEIRPELKV 122 Query: 111 YPGDKVIITEGAFEGFQAIFTEPDGEARSM-LLLNLINKEIKHSVKNTEFRK 161 GD+V I G F G++ E E ++ +LL++ +E + +T+ K Sbjct: 123 KKGDRVYIKSGPFMGYEGFVDEVYPEKGTVRVLLSIFGRETPTEIDHTQVEK 174 >UniRef50_A6E8J5 Transcription antiterminator n=1 Tax=Pedobacter sp. BAL39 RepID=A6E8J5_9SPHI Length = 173 Score = 45.1 bits (105), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 6/125 (4%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 +Q W+ +Y + ++ ++ L+ Q + C P+ ++ + V PLF +Y+FV Sbjct: 11 VQKWFAVYTRPRWEKKVEQQLKMQGITCYCPLRKVQSQWADRIKVVELPLFSSYVFVCIH 70 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQ----LSVYKPKDIVDPATPYPGDKV 116 P + GV +FV + A + +VI + L Y +IV GD+V Sbjct: 71 PR--EELNVRLNIGVVNFVYYMGHLAEIRHSVIEEIKSNLEKYPDAEIVSMRDLEVGDRV 128 Query: 117 IITEG 121 I G Sbjct: 129 RIKAG 133 >UniRef50_Q1Q029 Similar to transcription antitermination protein NusG n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q029_9BACT Length = 169 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 33/151 (21%), Positives = 67/151 (44%), Gaps = 10/151 (6%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 W+ ++ + ++ L + ++ P++ R ++ + PLFP YLFV + Sbjct: 8 WFAVHTRSRHEKQVDSFLREKNISSFLPLVKTISRRRDRKKFIDVPLFPGYLFVNITLDN 67 Query: 64 IHTTTINATRGVSHFV----RFGASPAIVPSAVIHQLSVYKPKDI-VDPATPY-PGDKVI 117 ++ I +TRGV + F SP +P A I+ L ++ +DP G KV Sbjct: 68 LY--EIKSTRGVVRIIGNEDDFIPSP--IPDAEINNLKTLINSNVAIDPYKYLQKGTKVR 123 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINK 148 + G G + + + R ++ ++++ K Sbjct: 124 VVSGPLIGLEGLLVKRKTNYRVVVSIDILQK 154 >UniRef50_C9LQP9 Transcription antitermination protein nusG n=1 Tax=Dialister invisus DSM 15470 RepID=C9LQP9_9FIRM Length = 206 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 34/153 (22%), Positives = 62/153 (40%), Gaps = 10/153 (6%) Query: 4 WYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPNY 54 WY+++ G + ++ L R+ + L PM E++ G++ VS +FP Y Sbjct: 36 WYVIHTYSGYENKVKDTLTRKVHSMGMDDTIIQILLPMHDEEEVKDGEKKVVSRKVFPGY 95 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGD 114 L ++ + + T GV+ FV P + ++ K K GD Sbjct: 96 LLIQMEVNDRSWYVVRNTPGVTGFVGTTTKPIPLSDEEAKRIIEGKDKKQTAKTDAKVGD 155 Query: 115 KVIITEGAFEGFQAIFTEPDGEARSMLLLNLIN 147 + IT G F A+ + + RS + ++ N Sbjct: 156 TIKITRGPFADRSAVVLDV-SDDRSKIKADISN 187 >UniRef50_P35872 Transcription antitermination protein nusG n=13 Tax=Bacteria RepID=NUSG_THET8 Length = 184 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/169 (25%), Positives = 73/169 (43%), Gaps = 23/169 (13%) Query: 3 SWYLLYCKRGQLQRAQEHLERQ------AVNCLAPMITLEKIVR----GKRTAVSEPLFP 52 WY ++ GQ ++A+ +LE++ +I E++V GK+ V + LFP Sbjct: 4 EWYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKKLFP 63 Query: 53 NYLFVEFD------PEVIHTTTINATRGVSHFVRFGASPA-IVPSAVIHQLSV---YKPK 102 YLF++ D P + T G++ FV G P + P V H L V K Sbjct: 64 GYLFIQMDLGDEEEPNEAW-EVVRGTPGITGFVGAGMRPVPLSPDEVRHILEVSGLLGKK 122 Query: 103 DIVDPATPY-PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKE 149 + + GD+V + G F F TE + E + +++ + +E Sbjct: 123 EAPKAQVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRE 171 >UniRef50_Q9CDV7 Transcription antitermination protein nusG n=52 Tax=Lactobacillales RepID=NUSG_LACLA Length = 185 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 44/156 (28%), Positives = 68/156 (43%), Gaps = 21/156 (13%) Query: 2 QSWYLLYCKRGQLQRAQEHL-ERQAVNCLA--------PMITLEKIVRGKRTAVSEPLFP 52 Q W+++ G ++ +E L ER + +A P T+ V GK V E LFP Sbjct: 11 QGWFVIQTYAGYERKVKEDLLERAELYNMADKILRVEIPTETIRTEVNGKMKEVEENLFP 70 Query: 53 NYLFVEFD----PEVIHTTTINATRGV-SHFVRFGASPAI---VPSAVIHQLSVYKPKDI 104 Y+ VE + I T N T V SH R +P + ++ V + D Sbjct: 71 GYVLVEMNMTDEAWFIVRNTPNVTGFVGSHGNRSKPTPLFEQEIQDILVGMGKVVREIDF 130 Query: 105 VDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSM 140 + G +V I +GAF GF+A TE +G+ ++ Sbjct: 131 ----DVFVGKRVRIVDGAFSGFEAPITEINGDKLTL 162 >UniRef50_C7PTI0 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PTI0_CHIPD Length = 174 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 35/125 (28%), Positives = 59/125 (47%), Gaps = 6/125 (4%) Query: 40 RGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRF-GASPAIVPSAVIHQLSV 98 R KR V PLFPNY+FV+ + +++ T I GV FV G + AI + + Sbjct: 53 RLKRMEV--PLFPNYIFVKTN--LLNKTPILGIPGVVRFVSVEGRAIAISEDDINKIRQI 108 Query: 99 YKPKDIVDPATPY-PGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNT 157 + + V+ + Y GDK+ I G F G + + R ++ L +I + + + N Sbjct: 109 EQSRQDVEIESVYNTGDKIRILNGVFSGLEGELYKRSNRLRVLIKLPVIAQAVSVEISNC 168 Query: 158 EFRKL 162 + K+ Sbjct: 169 DIEKI 173 >UniRef50_Q6TFR9 ORF9 n=1 Tax=Erwinia amylovora RepID=Q6TFR9_ERWAM Length = 155 Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 68/162 (41%), Gaps = 12/162 (7%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSE---PLFPNYLFV 57 M++WY+L + + L+ + L PM K ++ + P FP YLFV Sbjct: 1 MKNWYVLAFTSNKFGAVERFLKLNKIEFLCPMHEHSYSRPDKSFSIRKSLVPTFPGYLFV 60 Query: 58 EFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVI 117 D H + + + + F +P VP I Q+ Y +V A+ K I Sbjct: 61 YLDFNETHPEKLARFQYIYGLITFSNAPMAVPEVTI-QVIAYTC-SVVKTAS---SVKKI 115 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 I+ F AI + + RS++LLN + + SVK ++ Sbjct: 116 IS----HDFAAILLTEEPKKRSVMLLNYLCENHSQSVKEVKY 153 >UniRef50_C7PGB9 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PGB9_CHIPD Length = 185 Score = 43.9 bits (102), Expect = 0.002, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 2/89 (2%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 +WY +Y K ++ + L R+ + P+ + ++ V EPLF +Y+FV P Sbjct: 6 HTWYAVYTKPRWEKKVADALVRKQIETYCPINRVTHQWSDRKKIVEEPLFKSYVFVRI-P 64 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPS 90 E T + T G+ +FV + PA +P Sbjct: 65 E-DKKTLVRETSGIVNFVYWLGKPASIPD 92 >UniRef50_C7M2W0 Transcription antitermination protein nusG n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M2W0_ACIFD Length = 243 Score = 43.5 bits (101), Expect = 0.002, Method: Compositional matrix adjust. Identities = 40/169 (23%), Positives = 71/169 (42%), Gaps = 29/169 (17%) Query: 4 WYLLYCKRGQLQRAQEHL---------ERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNY 54 WY+++C G R +++L E + PM + ++ G+R V +FP Y Sbjct: 68 WYVVHCYSGYENRVRQNLATRIRSLGLEDRIFEVEIPMEDVTELKNGRRVKVQRKVFPGY 127 Query: 55 LFV--EFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL-SVYKPKDIVDPATPY 111 + V E D EV + I T G++ FV G+ P + + + S P+++ P Sbjct: 128 VLVRAEMDDEVW--SAIRNTPGITSFVGSGSKPVPLSRKEVEAMFSFATPEEL----RPQ 181 Query: 112 P----------GDKVIITEGAFEGFQAIFTEPDGEARSM-LLLNLINKE 149 P G+ V + EG F E + + + +L N+ +E Sbjct: 182 PQRRSTQEFEIGETVRVKEGPLADFVGEVAEVNADQLKLKVLFNIFGRE 230 >UniRef50_Q01XJ6 NusG antitermination factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01XJ6_SOLUE Length = 179 Score = 43.5 bits (101), Expect = 0.003, Method: Compositional matrix adjust. Identities = 33/154 (21%), Positives = 63/154 (40%), Gaps = 14/154 (9%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 W+ + + +++ + L + AP + + + +PLFP Y+F F P Sbjct: 20 WFAVKVRSNFEKKSADILREKGYQEFAPSYPSRRYWSDRVKVIDQPLFPGYVFCRFHPN- 78 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATP-------YPGDKV 116 H + T GV V FG A V + L + +++ + P + G KV Sbjct: 79 -HFLPVLQTAGVVQIVGFGGKLAPVDEVELASL-----RTLMNSSLPISQREFLHVGRKV 132 Query: 117 IITEGAFEGFQAIFTEPDGEARSMLLLNLINKEI 150 +I G G + I E R ++ ++L+ + + Sbjct: 133 LIRRGPLAGVEGILEEIRKGYRIVVSISLLQRSV 166 >UniRef50_A6EBM5 Putative uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EBM5_9SPHI Length = 170 Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/136 (23%), Positives = 55/136 (40%), Gaps = 19/136 (13%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 ++ WY + + ++A L R+ + P+ K ++ V EPL +YLFV Sbjct: 8 IKKWYPVCTQSRAEKKAYSELTRKNITSYLPLQRQMKQWSDRKKWVEEPLIRSYLFVHIS 67 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY--------- 111 + + T G++ F+ F A +P I QL + A+PY Sbjct: 68 RQ--QQAEVLMTSGIARFIYFSGHIASMPEQQIEQLKLL-------TASPYELEITENNL 118 Query: 112 -PGDKVIITEGAFEGF 126 G+K+ I G +G Sbjct: 119 LEGEKITIKAGPLQGM 134 >UniRef50_D0I9V3 Putative uncharacterized protein n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I9V3_VIBHO Length = 171 Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/136 (23%), Positives = 58/136 (42%), Gaps = 5/136 (3%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY +Y + + ++ L + P L + + +R EPLF +LFV PE Sbjct: 6 WYAVYTHFNEEKVLRDELLAKGYEVYLPERKLWETLGNRRRVTYEPLFKCHLFVRTTPEG 65 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLS--VYKPKDIVDPA-TPYPGDKVIITE 120 + + +G SH VR+G A + + I ++ +Y +D + + G V + Sbjct: 66 L--KNVKQAQGFSHLVRYGKYVATISESHIIKIKTILYYYEDATSVSNSNVEGLAVAVVN 123 Query: 121 GAFEGFQAIFTEPDGE 136 G +G + +GE Sbjct: 124 GPLKGMIGVLPAGEGE 139 >UniRef50_A9ECY4 Putative uncharacterized protein n=1 Tax=Kordia algicida OT-1 RepID=A9ECY4_9FLAO Length = 188 Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust. Identities = 32/150 (21%), Positives = 62/150 (41%), Gaps = 5/150 (3%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGK-RTAVSEPLFPNYLFVEFD 60 ++W++LY ++A+ LE + PM +I + + + + LFP+Y+FV+ D Sbjct: 27 RNWFVLYTAPRAEKKAKLELEYRGYEVFLPMTKSLRIWKNRQKKLIDSVLFPSYIFVKTD 86 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD--IVDPATPYPGDKVII 118 + I ++ ++ G P V I + D I G+ V I Sbjct: 87 ER--YLAEICRINKIATYIHCGGKPCKVSPECIEAIKCMLSMDQEISVGNDFIEGESVRI 144 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINK 148 EG G+ + + + + + L IN+ Sbjct: 145 VEGPLAGYNGVLVQQKSKTKFGIHLKEINQ 174 >UniRef50_C7RDB1 Transcription antitermination protein nusG n=2 Tax=Anaerococcus RepID=C7RDB1_ANAPD Length = 207 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/145 (26%), Positives = 60/145 (41%), Gaps = 9/145 (6%) Query: 4 WYLLYCKRGQLQRAQEHLE-----RQAVNCLAPMITLEKIVRGK---RTAVSEPLFPNYL 55 WY+++ G R + ++ Q + L + E+ V K + + LFP Y+ Sbjct: 41 WYVVHTYTGYENRVNDKIQMMIDNEQNPDILEVTVPTEEYVEVKNDTKKVKTRKLFPGYV 100 Query: 56 FVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDK 115 V+ + I T+GV+ FV P + A + + V I++ GD Sbjct: 101 MVKMNITNKSWYIIRNTQGVTGFVGPDGKPVALTPAEVRKFGVKDEAPILNINVNV-GDD 159 Query: 116 VIITEGAFEGFQAIFTEPDGEARSM 140 V I G FEGF A E D E S+ Sbjct: 160 VNIISGPFEGFVAKVEEVDKEKGSI 184 >UniRef50_D0MHN6 Transcription antitermination protein nusG n=80 Tax=Bacteria RepID=D0MHN6_RHOM4 Length = 186 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 67/151 (44%), Gaps = 19/151 (12%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQ---------AVNCLAPMITLEKIVRGKRTAVSEPLF 51 ++ WY+L G ++ +++LER+ L P T+ ++ GK+ F Sbjct: 10 VRKWYVLRTFSGHEKKVKQYLEREIERLGLQDRVGQILIPTETVFELRGGKKRTRERTFF 69 Query: 52 PNYLFVE--FDPEVIHTTTINATRGVSHFVRFGASPA-IVPSAVIHQLS-VYKPKDIVD- 106 P Y+ +E D E+ H I V F+ G P + P V L V + +++ + Sbjct: 70 PGYILIEAVLDRELQHL--IANMPSVVGFLGSGDQPTPLRPDEVRRILGKVDEAREMGEQ 127 Query: 107 PATPY-PGDKVIITEGAFEGFQAIFTE--PD 134 P P+ PGD V I EG F F + E PD Sbjct: 128 PEIPFKPGDVVRIIEGPFNNFTGVVEEVYPD 158 >UniRef50_C9M8Z2 Transcription antitermination protein nusG n=2 Tax=Synergistaceae RepID=C9M8Z2_9BACT Length = 185 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 38/176 (21%), Positives = 74/176 (42%), Gaps = 20/176 (11%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54 W+ + G + + +LE++ + L PM + + GK +S LFP+Y Sbjct: 13 WFAVQTYSGYENKVKNNLEQRIASMNAEDKIFRVLVPMEDVVVVKDGKSKQMSRKLFPSY 72 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIH-------QLSVYKPKDIVDP 107 + VE + + T GV+ FV GA P + + +L P+ +V+ Sbjct: 73 VLVEMIMDDQSWYVVRHTPGVTGFVGAGAHPLPLSDEEVRDVLVKVGELEAETPQIVVEC 132 Query: 108 ATPYPGDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRKL 162 GD V + G F G + ++ + + +L++ +E + V +TE ++ Sbjct: 133 QV---GDSVRVKSGPFVGAVGVVSDVNTSTGKVKFVLSVFGRETEAEVNHTELERV 185 >UniRef50_Q9ZK20 Transcription antitermination protein nusG n=52 Tax=Epsilonproteobacteria RepID=NUSG_HELPJ Length = 176 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 38/158 (24%), Positives = 65/158 (41%), Gaps = 20/158 (12%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSE-PL 50 M WY + G Q ++ +E A + + P + ++ + +T V E L Sbjct: 1 MMDWYAIQTYSGSEQSVKKAIENLANDHDIRDRIQEIIVPTEDIIEVSKKSKTKVMERSL 60 Query: 51 FPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATP 110 +P Y+F++ D + + I + VS F+ P + A I + + + + A P Sbjct: 61 YPGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHIL----EKMNNRAAP 116 Query: 111 YP------GDKVIITEGAFEGFQAIFTEPDGEARSMLL 142 P G+ V + EG F F A E D E R + L Sbjct: 117 KPKIFFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKL 154 >UniRef50_B6G0A9 Transcription antitermination protein nusG n=3 Tax=Clostridiales RepID=B6G0A9_9CLOT Length = 180 Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust. Identities = 34/155 (21%), Positives = 67/155 (43%), Gaps = 12/155 (7%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVN-CLAPMIT---------LEKIVRGKRTAVSEPLFPN 53 WY+++ G + + +ER + + +IT +EK +G ++P+ Sbjct: 9 WYVVHTYSGHENKVKATIERAVITRGMENIITHVVVPTENVVEKTPKGNEKIRQRKVYPS 68 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKP-KDIVDPATPY- 111 Y+ ++ + T+GV+ FV G+ P + + + + P +++V + Sbjct: 69 YVLIKMIITDESWYVVRNTKGVTGFVGPGSKPVPLSEEEVIAMGIELPAQEVVGGDVDFE 128 Query: 112 PGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLI 146 PGD V I G+F G E + E + + LL I Sbjct: 129 PGDVVKIINGSFAGNVGTVEEVNAEKKEVKLLTEI 163 >UniRef50_C1A6N2 Transcription antitermination protein nusG n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A6N2_GEMAT Length = 181 Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust. Identities = 42/159 (26%), Positives = 57/159 (35%), Gaps = 29/159 (18%) Query: 4 WYLLYCKRGQLQRAQEHLERQA------------VNCLAPMITLEKIVRGKRTAVSEPLF 51 WY + G + Q ++R+ L P + +I GK+ V +F Sbjct: 6 WYAIQTTSGHENKVQRLIQRKIDMDPAQPEDRLIRQALVPTQQVVEIKNGKKVTVERKIF 65 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY 111 P Y+ VE INA +GV FV P + + +L DPA Sbjct: 66 PGYVLVEMVASQDTLHEINAIQGVIKFVGKDKDPMPLRDDEVRRLLGQ-----ADPADET 120 Query: 112 P---------GDKVIITEGAFEGFQAIFTE--PD-GEAR 138 P G V ITEG F F E PD G+ R Sbjct: 121 PVREEIPFLVGQAVAITEGPFADFNGTVEEILPDKGKVR 159 >UniRef50_A0LIY4 NusG antitermination factor n=2 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LIY4_SYNFM Length = 212 Score = 42.0 bits (97), Expect = 0.007, Method: Compositional matrix adjust. Identities = 29/131 (22%), Positives = 51/131 (38%), Gaps = 2/131 (1%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 +SW+ LY + + L++++++C P++ +R ++ PLFP Y+FV Sbjct: 39 KSWFALYVQVKHEKEVVRRLDQKSIDCFLPLMECWSKRLDRRKRITLPLFPGYVFVHTVL 98 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY--PGDKVIIT 119 + I T G ++ P +P I L PY G+ V + Sbjct: 99 DNYTNVNILKTPGALSILKNSEGPLPIPVYQIENLQTILNSSKSLDLHPYLKEGEWVRVI 158 Query: 120 EGAFEGFQAIF 130 G G I Sbjct: 159 RGPLSGCVGIL 169 >UniRef50_B8I511 NusG antitermination factor n=6 Tax=Clostridium RepID=B8I511_CLOCE Length = 188 Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust. Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 13/151 (8%) Query: 4 WYLLYCKRGQLQRAQEHLER-QAVNCLAPMITLEKI---VRGKRTAVSEPLFPNYLFVEF 59 WY+L+ K G+ R +++L++ ++ + P I L + + G +PLFP Y+F+E Sbjct: 17 WYVLFVKSGREHRVEQYLKKIVGIDMINPFIPLHEFLFKISGTVKRELKPLFPGYVFIES 76 Query: 60 D---PEVIHTTTINATRGVSHFVRF----GASPAIVPSAVIHQLSVYKPKDIVDPATPY- 111 D E I N +S VR A+ S L + + ++ + Sbjct: 77 DMAGQEFIRKLY-NKIYLLSDIVRILKYSDTEIAVRDSEKQMLLDLCNNEHCIESSRGVI 135 Query: 112 PGDKVIITEGAFEGFQAIFTEPDGEARSMLL 142 GD++ IT G G ++I + + R L+ Sbjct: 136 KGDRIYITNGPLRGRESIIKKVNRHKRQALV 166 >UniRef50_Q2LVW1 Transcription antitermination protein nusG n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LVW1_SYNAS Length = 167 Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust. Identities = 34/167 (20%), Positives = 76/167 (45%), Gaps = 8/167 (4%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 SWY ++ + + L ++++ P I + + +R + PLFP YLFV+ P Sbjct: 2 SWYAVHTRSRHEDKVFTGLVQKSITTFLPKIEVWSKRKDRRKRIMTPLFPGYLFVDM-PC 60 Query: 63 VIHTTTINA--TRGVSHFVR--FGASPAIVPSAVIHQLS--VYKPKDIVDPATPYPGDKV 116 + + ++ T GV + G++P VP I + V ++ + P+ G+ Sbjct: 61 LDNQAKLDVLKTFGVVRILGKPTGSAPIPVPDDKIDAIRRIVDSRVEVQNLQYPHVGEAA 120 Query: 117 IITEGAFEGFQAIFTEPDGEARSMLL-LNLINKEIKHSVKNTEFRKL 162 I +G F+G + + D + ++ + L+ + + + +++ K+ Sbjct: 121 RIVDGPFKGIEGTVIKTDYDKDLFVVTIELLQRSVAIKLDSSQIEKI 167 >UniRef50_B1I1L1 Transcription antitermination protein nusG n=3 Tax=Firmicutes RepID=B1I1L1_DESAP Length = 178 Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust. Identities = 39/169 (23%), Positives = 74/169 (43%), Gaps = 28/169 (16%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVR-------------GKRTAVSE 48 + W++++ G + + +LE++ + M +KI R GKR Sbjct: 3 KQWFVVHTYSGYENKVKANLEKR----IESMSMEDKIFRIVVPVEDEIEVKGGKRKISKR 58 Query: 49 PLFPNYLFVEFDPEVIHTTTINATRGVSHF---VRFGASPAIVPSA----VIHQLSVYKP 101 +FP Y+ VE + + T GV+ F V G+ P + A +I Q+ +P Sbjct: 59 KIFPGYVMVEMILDDDSYRVVRNTPGVTGFVGSVGIGSKPIPLTDAEANQIISQMEGDEP 118 Query: 102 KDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKE 149 + +D PG+KV + G FE F + + E A+ +++++ +E Sbjct: 119 RIRIDLV---PGEKVRVMAGPFENFIGTVDDVNYEKAKIRVMISMFGRE 164 >UniRef50_D1NBR2 Transcription antitermination protein nusG n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NBR2_9BACT Length = 193 Score = 41.2 bits (95), Expect = 0.012, Method: Compositional matrix adjust. Identities = 35/160 (21%), Positives = 67/160 (41%), Gaps = 22/160 (13%) Query: 4 WYLLYCKRGQLQRAQEHLERQ--------AVNCLAPMITLEKIVRGKRTAVSEPLFPNYL 55 W++++ G + ++ + RQ P + ++ +GK+T + LFP Y+ Sbjct: 15 WFVIHTLSGHENKVRDKILRQLQTGDQVPVYEAFIPTEKVAEVRQGKKTTTTRKLFPGYI 74 Query: 56 FVEF----DPEVIHTTT---INATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDI---- 104 +V D +I+ I + +GV F+ P + + + + +P Sbjct: 75 WVRMDLYDDLGMINEKAWYFIRSVQGVLGFLGGDNKPTALTESEVE--DIMRPAQAGAPE 132 Query: 105 VDPATPYP-GDKVIITEGAFEGFQAIFTEPDGEARSMLLL 143 V P + G+ V I +GAFE F+ E D E + L+ Sbjct: 133 VKPKIAFEVGEVVRIKDGAFENFEGAIQEIDNERGKLKLM 172 >UniRef50_Q1WST1 Transcription antitermination protein nusG n=55 Tax=Firmicutes RepID=Q1WST1_LACS1 Length = 186 Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust. Identities = 42/179 (23%), Positives = 69/179 (38%), Gaps = 21/179 (11%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIV----------RGKRTAVSEPLF 51 + WY+L+ G + +E+LE +A + +V GK F Sbjct: 10 KKWYVLHTYAGYENKVKENLESRATSMGMEDYIFRVVVPEEEKHETTKTGKEKVEKLKTF 69 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFVRF---GASPAIVPSA----VIHQLSVYKPKDI 104 P Y+ VE + T GV+ FV G+ PA + ++H+L + Sbjct: 70 PGYVLVEMVMTDQSWYVVRNTPGVTGFVGSHGSGSKPAPLLDEEINHILHELGISSRHSN 129 Query: 105 VDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLL-LNLINKEIKHSVKNTEFRKL 162 D GD V I +GAF G TE D E + + +++ +E + + KL Sbjct: 130 FDAEV---GDAVTIIDGAFSGLVGKITEIDTEKMKLKVDIDMFGRETAAELNYDQVDKL 185 >UniRef50_C7GYQ7 Transcription antitermination protein nusG n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GYQ7_9FIRM Length = 198 Score = 40.8 bits (94), Expect = 0.014, Method: Compositional matrix adjust. Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 12/146 (8%) Query: 4 WYLLYCKRGQLQRAQEHL----ERQAVNCLAPMITL---EK--IVRGKRTAVSEPLFPNY 54 WY+++ G Q+ ++++ E + + L I + EK I G+R + F Y Sbjct: 33 WYVVHTYSGHEQKVKDNILKIVESRGMGDLILKINIPTEEKVEIKNGQRKSRKVKQFIGY 92 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGD 114 + ++ + T+GV+ FV G P + + + +L + K ++ PGD Sbjct: 93 ILIKMKVTNESWYVVRNTQGVTGFVGQGKKPVPLTAEEVRRLGIEK---VIVNLKIKPGD 149 Query: 115 KVIITEGAFEGFQAIFTEPDGEARSM 140 + + G FEG E D E ++ Sbjct: 150 TIKVINGPFEGHNGEVIEVDEEHETL 175 >UniRef50_O83264 Transcription antitermination protein nusG n=4 Tax=Treponema RepID=NUSG_TREPA Length = 185 Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust. Identities = 44/154 (28%), Positives = 60/154 (38%), Gaps = 33/154 (21%) Query: 2 QSWYLLYC---KRGQLQRAQEHLERQA-------VNCLAPMITLEKIVRGKRTAVSEPLF 51 + WY+L+ + +++RA L A + P L ++ GK+ V F Sbjct: 3 KEWYILHTFSGREARVERAVRMLVEHARIPTNVIFDIKIPEELLTEVKDGKKRVVRRKFF 62 Query: 52 PNYLFVEFD-PEVIHTTTINATR---GVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDP 107 P YL VE D PEV N R GVS F G+S P AV S + + I+ Sbjct: 63 PGYLLVEMDLPEVDWRIVCNEVRRIPGVSGF--LGSSGNAKPQAV----SADEARRILQK 116 Query: 108 ATPYPGDK-------------VIITEGAFEGFQA 128 A GD+ V I EG F F Sbjct: 117 AGEIKGDRTPRIAQTFLVGQQVRIVEGPFATFSG 150 >UniRef50_Q1QKQ8 Transcription antitermination protein nusG n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QKQ8_NITHX Length = 196 Score = 40.8 bits (94), Expect = 0.016, Method: Compositional matrix adjust. Identities = 34/177 (19%), Positives = 72/177 (40%), Gaps = 29/177 (16%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMI-----TLEKIVRGKRTA--VSEPLFPNYLF 56 WY+L + +A L + + AP++ T + +G++ ++ P+FP Y+F Sbjct: 7 WYVLQTRPAHEDKAARGLVARGFDPYAPVVYRRVPTGRRDDKGRKLTREIARPMFPGYIF 66 Query: 57 VEFDPEVIHTTTINATRGVSHFVRFGAS-PAIVPSAVIHQLSVYKPKDI----------- 104 V+FD + G++ +++ A P VP + ++V + ++ Sbjct: 67 VQFDAGDEKFAEVRIVPGITGYLKDEAGEPQAVPDVAMDLIAVSETEEFGRYLDEEERAR 126 Query: 105 ----------VDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIK 151 P GD V + G ++ + ++ D R +LL ++ +E K Sbjct: 127 RAALRASKRKRGPPEFKAGDDVRVVRGEWKDWIMKVSKADDLGRVVLLFHIFGRETK 183 >UniRef50_B0S060 Transcription antitermination protein nusG n=5 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S060_FINM2 Length = 193 Score = 40.8 bits (94), Expect = 0.017, Method: Compositional matrix adjust. Identities = 38/160 (23%), Positives = 65/160 (40%), Gaps = 18/160 (11%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIVRGKRTAVSEPLFPNY 54 WY+++ G + + ++E+ N + P V G + +FP Y Sbjct: 25 WYVVHTYSGHEGKVKVNIEKMVENRGYIDDIFEVVVPTEEYVSEVGGAKKLKERKIFPGY 84 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSV----YKPKDIVDPATP 110 +FV+ + + TRGV+ FV + P V I + ++ Y K+I Sbjct: 85 VFVKMTITDVSWYLVRNTRGVTGFVGPESKPVAVSEKEIQKFALKNQSYSKKEI----DV 140 Query: 111 YPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKE 149 GD V I GAF I E + E A +L++L ++ Sbjct: 141 NVGDNVNIVSGAFSDQVGIIEEINTEKAICKVLISLFGRD 180 >UniRef50_B2KEU4 Transcription antitermination protein nusG n=2 Tax=Elusimicrobia RepID=B2KEU4_ELUMP Length = 178 Score = 40.4 bits (93), Expect = 0.018, Method: Compositional matrix adjust. Identities = 36/165 (21%), Positives = 72/165 (43%), Gaps = 24/165 (14%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFP 52 ++WY+++ + G + +E + Q L P + ++ + K+ FP Sbjct: 5 KAWYIVHTQTGHEDKVREKILLQVETQNFGDRIFQVLVPTEDVVEVKQNKKVQRKRKFFP 64 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVP------SAVIH--QLSVYKPKDI 104 +Y+ VE D + + R VS F P VP +A++ Q KPK + Sbjct: 65 SYVLVEMD---LTSEAYWFIRNVSGVTGFLGDPNPVPLPEEEIAAILDLTQPGSGKPKHV 121 Query: 105 VDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSM-LLLNLINK 148 ++ G+ V ITEG F+ F + E + + + +++N+ ++ Sbjct: 122 IEFEA---GENVRITEGPFKHFIGVVQEVNNQKTKLKIMVNVFDR 163 >UniRef50_UPI000174528A NusG antitermination factor n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174528A Length = 158 Score = 40.4 bits (93), Expect = 0.019, Method: Compositional matrix adjust. Identities = 35/132 (26%), Positives = 50/132 (37%), Gaps = 14/132 (10%) Query: 26 VNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASP 85 V P I ++ + E LFP+Y F F H + T V V FG P Sbjct: 7 VETFCPRIRFQRSTPRGKVWFVEALFPSYFFARFVYSEAHRA-VKHTHNVIRIVGFGGDP 65 Query: 86 AIVPSAVIHQL-------SVYKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTE-PDGEA 137 A +P I L + + K V+ GD V + EG G + + GE Sbjct: 66 APIPDLTIENLREEMQGAELREVKYGVE-----VGDTVEVAEGPMRGLKGVVESLASGEQ 120 Query: 138 RSMLLLNLINKE 149 R LLL + ++ Sbjct: 121 RVKLLLEFLGRQ 132 >UniRef50_Q2LQ92 Transcription antitermination protein nusG n=4 Tax=Proteobacteria RepID=Q2LQ92_SYNAS Length = 176 Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust. Identities = 34/154 (22%), Positives = 61/154 (39%), Gaps = 16/154 (10%) Query: 4 WYLLYCKRG----QLQRAQEHLERQAV-----NCLAPMITLEKIVRGKRTAVSEPLFPNY 54 WY+++ G Q QE +E + + L P + ++V G++ FP Y Sbjct: 5 WYVVHTYSGFESKVKQSLQERIEAAGMQARFSDILIPEEDVVELVSGEKKTSKRKFFPGY 64 Query: 55 LFV--EFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYP 112 + V E D + H + T V+ F+ P+ +P + L + + P + Sbjct: 65 ILVKMELDDDTWHL--VKDTPKVTGFIGSREKPSPIPDKDVELLKTRIDEGTLKPKPKFK 122 Query: 113 ---GDKVIITEGAFEGFQAIFTEPDGEARSMLLL 143 GD V I +G F F + E E + ++ Sbjct: 123 FEVGDHVTIIDGPFTNFDGVIDEVKAEKGKLRVI 156 >UniRef50_A7V7E7 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=A7V7E7_BACUN Length = 243 Score = 40.0 bits (92), Expect = 0.024, Method: Compositional matrix adjust. Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 16/151 (10%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY L G+ ++A +++ + + P K+++GKR V+E PN F E Sbjct: 68 WYALRTTYGREKKAYDYMTAKGITAFYPTTDTVKLIKGKRKIVTESRLPNIFFAYGTEEQ 127 Query: 64 IHTTTINAT---------RGVSHFVRFGASPAIVPSAVIHQLSVYKPKD-------IVDP 107 + T + R V R P IVP + L + D +++ Sbjct: 128 LKTFVYDNVNLPFLRFYYRHVHVGRRIEKIPMIVPDYQMESLKIICAADADNTIVSLIEV 187 Query: 108 ATPYPGDKVIITEGAFEGFQAIFTEPDGEAR 138 G V + +GAF+G G+ R Sbjct: 188 PKFEKGQLVRVIDGAFKGVIGRVARWQGQQR 218 >UniRef50_C7NC81 Transcription antitermination protein nusG n=10 Tax=Bacteria RepID=C7NC81_LEPBD Length = 207 Score = 39.7 bits (91), Expect = 0.038, Method: Compositional matrix adjust. Identities = 43/193 (22%), Positives = 79/193 (40%), Gaps = 35/193 (18%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIV----------RGKRTAVSEPLF 51 + WY+++ G ++ LE++ + L + +I+ RGK+ VS LF Sbjct: 16 KKWYIIHTYSGYEKKVAADLEKR-IESLDLTDKVFRILVPEEEVLEEKRGKQVKVSRKLF 74 Query: 52 PNYLFVEF---------------DPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL 96 P+Y+ +E D + + I T GV+ FV G+ P + L Sbjct: 75 PSYVMIEMLSVKEENELGLGYRVDSDAWY--VIRNTNGVTGFVGVGSDPIPLSDEEASNL 132 Query: 97 SVYKPKDIVDPATPY------PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKE 149 D+ +P G+ V + G+F+G Q E D E + ++L ++ + Sbjct: 133 LAKIGIDVEGETSPRIDIDFKVGEVVEVKGGSFDGQQGEIAEIDYEHGKVKVMLEVLGRL 192 Query: 150 IKHSVKNTEFRKL 162 V++TE K+ Sbjct: 193 TPVEVEHTEIAKI 205 >UniRef50_B8IAM8 Transcription antitermination protein nusG n=2 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IAM8_METNO Length = 255 Score = 39.3 bits (90), Expect = 0.041, Method: Compositional matrix adjust. Identities = 42/151 (27%), Positives = 64/151 (42%), Gaps = 20/151 (13%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIV----RGKRTAVSEPLFPNYLFV 57 + W+++ K +RA + L + + + +T E++ G+R V PL LFV Sbjct: 90 RRWHVMVAKPRFARRAAKDLTKAGIPAV---LTDERVELVEESGRRRIVKRPLLRRVLFV 146 Query: 58 EFD----PEVIHTTTINATRGVSHFVRFGASPAI-VPSAVIHQLSVYKPKDIV---DPAT 109 PEV+H T V VR G AI VP+ + + V D + DP Sbjct: 147 GLPRCAAPEVVHRETYF----VRDAVRDGCGRAIQVPADQLRRF-VRALADTLTERDPNA 201 Query: 110 PYPGDKVIITEGAFEGFQAIFTEPDGEARSM 140 PGD++ I G F F I + D R + Sbjct: 202 FEPGDEIRIKSGPFASFHGIIEDADYATRRL 232 >UniRef50_Q2RYZ3 Putative uncharacterized protein n=2 Tax=Salinibacter ruber DSM 13855 RepID=Q2RYZ3_SALRD Length = 280 Score = 38.9 bits (89), Expect = 0.061, Method: Compositional matrix adjust. Identities = 31/153 (20%), Positives = 64/153 (41%), Gaps = 7/153 (4%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 W + Y + ++ + L+ + ++ + P T + + ++EPLF NYLF D + Sbjct: 116 WRVFYTRARAEKKCETRLDERRIDVMVPKKTEVRQWSDRTKEITEPLFRNYLFARVDEK- 174 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYK--PKDI-VDPATPYPGDKVIITE 120 + T G+ V F PA + + +L + P+ + P G+ V IT Sbjct: 175 -DRLRVLRTNGIVRCVHFDGEPARLREETVDRLQKAQAVPERLSTADLRPAVGETVTITG 233 Query: 121 G--AFEGFQAIFTEPDGEARSMLLLNLINKEIK 151 G +G + G+ ++ + + + +K Sbjct: 234 GPERLQGLTGKVLQHRGQTYLLVQVRAVRQAVK 266 >UniRef50_B3E158 Transcription antitermination protein nusG n=3 Tax=Verrucomicrobia RepID=B3E158_METI4 Length = 201 Score = 38.5 bits (88), Expect = 0.073, Method: Compositional matrix adjust. Identities = 33/152 (21%), Positives = 68/152 (44%), Gaps = 20/152 (13%) Query: 4 WYLLYCKRGQLQRAQEHLERQ---------AVNCLAPMITLEKIVRGKRTAVSEPLFPNY 54 WY L+ GQ ++ +++LE++ + P+ + ++ +GKR ++ L+P Y Sbjct: 23 WYALHVLSGQEEKVKKNLEKRIKTEEMQDLVGEVVIPVERVSEVRKGKRIEINRKLYPGY 82 Query: 55 LFVEF-----DPEVIHTTT--INATRGVSHFVRFGASPAIVPSAVIHQL--SVYKPKDIV 105 +F++ ++I + T GV F G +P +P + + + + Sbjct: 83 VFLQIQLRDSSGKLIERAWYFVRETSGVIGFAD-GDNPLPMPREQVEGMLRQIQERTSSA 141 Query: 106 DPATPYP-GDKVIITEGAFEGFQAIFTEPDGE 136 P T + GD+V + +G F + + E D E Sbjct: 142 LPKTVFSVGDRVKVGDGPFLNSEGVIEEVDLE 173 >UniRef50_D1CD65 Transcription antitermination protein nusG n=5 Tax=Bacteria RepID=D1CD65_THET1 Length = 201 Score = 38.5 bits (88), Expect = 0.074, Method: Compositional matrix adjust. Identities = 34/153 (22%), Positives = 65/153 (42%), Gaps = 16/153 (10%) Query: 4 WYLLYCKRG---QLQRAQEH------LERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNY 54 WY+++ G +++R +H + + + + P + +I GKR V + +FP Y Sbjct: 30 WYVIHTYSGYEDKVKRDLQHRVETMGMSDRIRDIIVPTVEEIEIREGKRHKVQKKVFPGY 89 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVP----SAVIHQLSVYKPKDIVDPATP 110 + V + + T GV+ FV G P + ++ ++S PK + Sbjct: 90 VLVRMRMDDAAWNVVRYTPGVTGFVGSGTKPTPLDEKEVEKILQRMSEEPPK---VKMSL 146 Query: 111 YPGDKVIITEGAFEGFQAIFTEPDGEARSMLLL 143 G+ V I +G F F+ E + E + +L Sbjct: 147 RLGEAVRIVDGPFTDFEGTVDEINEEKGKVKVL 179 >UniRef50_B5YJ95 Transcription termination factor NusG domain protein n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJ95_THEYD Length = 169 Score = 38.5 bits (88), Expect = 0.076, Method: Compositional matrix adjust. Identities = 33/162 (20%), Positives = 68/162 (41%), Gaps = 9/162 (5%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 +WY +Y K + + L + + P + + + ++ + PLFP YLFV + Sbjct: 7 NWYCIYVKSRHEFKVFDRLTKAGIEAFLPAVERLRRWKDRKKLIKFPLFPGYLFVCIEKS 66 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD--PATPYP----GDKV 116 + T GV F++ +P+ P + + V K I + PYP G +V Sbjct: 67 YELMLKVLKTPGVVTFIK---TPSGEPEPIPEEEIVPLRKAIENGREIDPYPYLKEGQRV 123 Query: 117 IITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTE 158 I G G I + + + ++ ++++ + + + +E Sbjct: 124 KIKSGPLAGATGILKKKEKQHFFIISIHILQRAVSVKIDASE 165 >UniRef50_B9JXL7 Transcription antitermination protein nusG n=3 Tax=Agrobacterium vitis S4 RepID=B9JXL7_AGRVS Length = 220 Score = 38.1 bits (87), Expect = 0.089, Method: Compositional matrix adjust. Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 12/134 (8%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTA--VSEPLFPNYLFVEFDP 61 W + CK G Q ++ L Q ++C P R ++ A V PLF YLFV P Sbjct: 52 WVVARCKSGLEQVIRDALAEQGIDCWCPCERRRLPPRRRKPALVVERPLFRGYLFVRVIP 111 Query: 62 E-VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSV--------YKPKDIVDPATPYP 112 + + + A+R S + G P ++P ++ QL + + V P Sbjct: 112 DNEAYAGLLLASRLQSLMGQDG-KPYLMPETLMRQLQLSAKAAERRHMDAGDVPPMPDML 170 Query: 113 GDKVIITEGAFEGF 126 G +V I G F F Sbjct: 171 GKQVTIRSGPFADF 184 >UniRef50_D1CTG7 Transcription antiterminator NusG (Fragment) n=1 Tax=Sinorhizobium saheli RepID=D1CTG7_SINSA Length = 129 Score = 38.1 bits (87), Expect = 0.093, Method: Compositional matrix adjust. Identities = 30/127 (23%), Positives = 49/127 (38%), Gaps = 12/127 (9%) Query: 40 RGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL--- 96 R + V F YLFV D IN+T GV V +P VP V+ L Sbjct: 4 RAQHRTVCSAYFDCYLFVSLDIRQQRWPPINSTVGVRRLVMSEHAPLPVPHGVVESLLAA 63 Query: 97 ----SVYKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKH 152 PK++++ PG K+ +T G F +L++++N+ + Sbjct: 64 TDDEGFLHPKELLE-----PGQKIRVTNGPFTDQLGTLDYVGRSGAVRILIDIMNRAVPI 118 Query: 153 SVKNTEF 159 + +F Sbjct: 119 YIDRDKF 125 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AFW1 Transcriptional activator rfaH n=162 Tax=Enterob... 228 6e-59 UniRef50_D2C1D2 NusG antitermination factor n=5 Tax=Gammaproteob... 218 4e-56 UniRef50_A0KGQ9 Transcriptional activator RfaH n=3 Tax=Aeromonad... 189 2e-47 UniRef50_C1DDG1 RfaH n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 186 3e-46 UniRef50_Q82X31 Putative transcriptional activator n=1 Tax=Nitro... 184 9e-46 UniRef50_C7RAP1 Transcriptional acivator RfaH n=1 Tax=Kangiella ... 184 1e-45 UniRef50_Q7MMR1 Transcription antiterminator n=58 Tax=Vibrionale... 182 3e-45 UniRef50_A0XZ39 Transcriptional activator RfaH n=2 Tax=Alteromon... 181 8e-45 UniRef50_Q4K6G2 Transcriptional activator RfaH n=2 Tax=Pseudomon... 180 2e-44 UniRef50_A1WZB7 Transcription antitermination protein nusG n=1 T... 178 5e-44 UniRef50_Q1QVL5 Transcription antitermination protein nusG n=1 T... 178 5e-44 UniRef50_A6F1J5 Transcriptional activator RfaH n=2 Tax=Marinobac... 178 7e-44 UniRef50_A4WZX9 Transcription antitermination protein nusG n=1 T... 177 1e-43 UniRef50_Q3J8A9 Transcriptional activator RfaH n=1 Tax=Nitrosoco... 177 1e-43 UniRef50_Q0ACI7 Transcription antitermination protein nusG n=1 T... 176 1e-43 UniRef50_Q1YPV4 Transcriptional activator RfaH n=1 Tax=gamma pro... 175 3e-43 UniRef50_C8QDS8 Transcriptional acivator RfaH n=2 Tax=Pantoea sp... 174 1e-42 UniRef50_UPI0000E0F5F6 transcriptional activator RfaH n=1 Tax=Gl... 174 1e-42 UniRef50_Q48H23 Transcriptional activator RfaH n=7 Tax=Pseudomon... 173 2e-42 UniRef50_A1T084 NusG antitermination factor n=1 Tax=Psychromonas... 173 2e-42 UniRef50_A9ND88 Transcriptional activator RfaH n=6 Tax=Coxiella ... 172 4e-42 UniRef50_A6FES1 Putative transcriptional activator RfaH n=1 Tax=... 171 8e-42 UniRef50_B1KMD8 Transcriptional acivator RfaH n=21 Tax=Shewanell... 170 1e-41 UniRef50_A6FV14 Transcription antitermination protein nusG n=2 T... 168 4e-41 UniRef50_Q3KCF2 Transcriptional activator RfaH n=1 Tax=Pseudomon... 163 1e-39 UniRef50_A6GM36 NusG antitermination factor n=1 Tax=Limnobacter ... 161 5e-39 UniRef50_Q2WBC3 Transcription antitermination protein nusG n=1 T... 161 7e-39 UniRef50_A3WUF1 Transcriptional antitermination protein, putativ... 161 9e-39 UniRef50_Q0F316 Transcriptional activator RfaH n=1 Tax=Mariprofu... 160 1e-38 UniRef50_Q0FE68 Transcription antitermination protein nusG n=1 T... 159 3e-38 UniRef50_Q5QWY1 Transcription antiterminator RfaH n=2 Tax=Idioma... 159 4e-38 UniRef50_B8KUX9 Transcription termination factor nusG domain pro... 158 4e-38 UniRef50_C6Y0K9 NGN domain protein n=1 Tax=Pedobacter heparinus ... 154 8e-37 UniRef50_Q1NMQ2 NGN n=3 Tax=delta proteobacterium MLMS-1 RepID=Q... 152 4e-36 UniRef50_B1I6V9 Transcription antitermination protein nusG n=1 T... 152 4e-36 UniRef50_C7PUS0 NusG antitermination factor n=1 Tax=Chitinophaga... 150 1e-35 UniRef50_B8FH43 NusG antitermination factor n=1 Tax=Desulfatibac... 150 1e-35 UniRef50_A4EGG1 Transcriptional antitermination protein, putativ... 146 3e-34 UniRef50_A3V684 Transcriptional activator RfaH n=1 Tax=Loktanell... 146 3e-34 UniRef50_B9KYX2 Transcription antitermination protein nusG n=5 T... 145 4e-34 UniRef50_Q01TC5 NusG antitermination factor n=1 Tax=Candidatus S... 145 5e-34 UniRef50_Q2CAE9 Transcriptional antitermination protein, putativ... 145 5e-34 UniRef50_D0LJE5 Transcription antitermination protein nusG n=1 T... 144 7e-34 UniRef50_C6XVK8 NGN domain protein n=1 Tax=Pedobacter heparinus ... 144 8e-34 UniRef50_Q1Q029 Similar to transcription antitermination protein... 144 9e-34 UniRef50_A1VS68 NusG antitermination factor n=2 Tax=Polaromonas ... 143 1e-33 UniRef50_C7PS65 NusG antitermination factor n=1 Tax=Chitinophaga... 143 2e-33 UniRef50_A5D5K3 Transcription antitermination protein nusG n=7 T... 142 4e-33 UniRef50_C0QI35 Transcriptional antiterminator (SH3-like protein... 142 4e-33 UniRef50_Q3AU98 Transcription antitermination protein nusG n=6 T... 138 5e-32 UniRef50_Q6AIA2 Related to transcriptional activators n=1 Tax=De... 138 6e-32 UniRef50_Q48MX6 Transcriptional activator RfaH n=1 Tax=Pseudomon... 138 7e-32 UniRef50_A9DI26 NusG antitermination factor n=1 Tax=Kordia algic... 137 1e-31 UniRef50_C7PTI0 NusG antitermination factor n=1 Tax=Chitinophaga... 137 1e-31 UniRef50_Q04WD1 Transcription antiterminator n=4 Tax=Leptospira ... 137 2e-31 UniRef50_C6QI43 NusG antitermination factor n=1 Tax=Hyphomicrobi... 136 2e-31 UniRef50_B3DWJ1 Transcriptional activator RfaH, NusG family n=1 ... 136 2e-31 UniRef50_A7FC44 Transcriptional activator n=1 Tax=Yersinia pseud... 136 2e-31 UniRef50_A3EVT3 Transcription antitermination protein nusG n=4 T... 136 3e-31 UniRef50_C4Z2Q9 Transcription antitermination protein nusG n=20 ... 136 3e-31 UniRef50_D0WPF7 Transcription antitermination protein nusG n=1 T... 136 3e-31 UniRef50_D2QI92 NusG antitermination factor n=2 Tax=Spirosoma li... 135 6e-31 UniRef50_B9XAW5 NusG antitermination factor n=1 Tax=bacterium El... 134 7e-31 UniRef50_B4S8Z4 NusG antitermination factor n=4 Tax=Chlorobiacea... 134 1e-30 UniRef50_B8E0K4 Transcription antitermination protein nusG n=2 T... 133 2e-30 UniRef50_A5FN19 Transcription antitermination protein nusG n=1 T... 133 2e-30 UniRef50_C7PT75 NusG antitermination factor n=1 Tax=Chitinophaga... 133 2e-30 UniRef50_P35872 Transcription antitermination protein nusG n=13 ... 132 4e-30 UniRef50_C9LQP9 Transcription antitermination protein nusG n=1 T... 132 4e-30 UniRef50_B4D2H1 Transcription antitermination protein nusG n=1 T... 130 2e-29 UniRef50_A3XR75 NusG antitermination factor n=1 Tax=Leeuwenhoeki... 129 2e-29 UniRef50_A3J1W0 Putative transcriptional regulator n=1 Tax=Flavo... 129 2e-29 UniRef50_D2LJZ0 NusG antitermination factor n=1 Tax=Rhodomicrobi... 128 5e-29 UniRef50_Q1RHC5 Transcription antitermination protein nusG n=15 ... 128 6e-29 UniRef50_A6E8J5 Transcription antiterminator n=1 Tax=Pedobacter ... 127 1e-28 UniRef50_Q9CDV7 Transcription antitermination protein nusG n=52 ... 126 2e-28 UniRef50_A6DRM3 Putative transcriptional activator n=1 Tax=Lenti... 126 2e-28 UniRef50_A7AFP3 Putative uncharacterized protein n=2 Tax=Parabac... 121 1e-26 UniRef50_C9RQP0 Transcription antitermination protein nusG n=1 T... 119 4e-26 UniRef50_A5TS63 Transcription antitermination protein nusG n=10 ... 118 5e-26 UniRef50_Q9EUG2 Actx protein n=1 Tax=Escherichia coli RepID=Q9EU... 118 5e-26 UniRef50_Q7BQV7 Putative NusG-type transcription antiterminator ... 118 6e-26 UniRef50_Q8R8A2 Transcription antitermination protein nusG n=1 T... 117 2e-25 UniRef50_Q6TFR9 ORF9 n=1 Tax=Erwinia amylovora RepID=Q6TFR9_ERWAM 113 2e-24 UniRef50_B7UF78 Similar to transcriptional activator n=1 Tax=Yer... 111 8e-24 UniRef50_Q2NTN8 Putative uncharacterized protein n=1 Tax=Sodalis... 107 9e-23 UniRef50_C9Y5P4 Transcriptional activator rfaH n=3 Tax=Enterobac... 107 1e-22 UniRef50_B9YBP8 Putative uncharacterized protein n=1 Tax=Holdema... 106 3e-22 UniRef50_B2CBC8 Transcription antiterminator n=2 Tax=Enterobacte... 101 9e-21 UniRef50_B0ZDY9 ActX n=5 Tax=Enterobacteriaceae RepID=B0ZDY9_ECOLX 100 3e-20 UniRef50_B0K4N5 Transcription antitermination protein nusG n=9 T... 98 1e-19 UniRef50_C3M8G1 Transcriptional activator affecting biosynthesis... 96 5e-19 UniRef50_A8T9L1 Putative uncharacterized protein n=1 Tax=Vibrio ... 95 6e-19 UniRef50_Q6VE90 Orf37 n=2 Tax=Pseudomonas syringae group RepID=Q... 84 1e-15 UniRef50_Q48B18 Transcriptional regulator n=18 Tax=Pseudomonas s... 83 4e-15 UniRef50_Q54017 AnfA1 n=2 Tax=Serratia entomophila RepID=Q54017_... 76 5e-13 Sequences not found previously or not previously below threshold: UniRef50_C7M2W0 Transcription antitermination protein nusG n=1 T... 143 2e-33 UniRef50_B0S060 Transcription antitermination protein nusG n=5 T... 139 2e-32 UniRef50_D1CD65 Transcription antitermination protein nusG n=5 T... 139 3e-32 UniRef50_Q2LVW1 Transcription antitermination protein nusG n=1 T... 136 2e-31 UniRef50_A6EBM5 Putative uncharacterized protein n=1 Tax=Pedobac... 136 2e-31 UniRef50_Q6A6K1 Transcription antitermination protein nusG n=3 T... 133 1e-30 UniRef50_D2RNN9 NusG antitermination factor n=1 Tax=Acidaminococ... 133 1e-30 UniRef50_D1BP79 Transcription antitermination protein nusG n=5 T... 133 2e-30 UniRef50_Q01XJ6 NusG antitermination factor n=1 Tax=Candidatus S... 133 2e-30 UniRef50_Q5HRL6 Transcription antitermination protein nusG n=212... 133 2e-30 UniRef50_Q9KGE7 Transcription antitermination protein nusG n=16 ... 133 3e-30 UniRef50_Q01SW9 Transcription antitermination protein nusG n=75 ... 131 1e-29 UniRef50_A6LPP9 Transcription antitermination protein nusG n=27 ... 131 1e-29 UniRef50_Q1WST1 Transcription antitermination protein nusG n=55 ... 130 1e-29 UniRef50_C9M8Z2 Transcription antitermination protein nusG n=2 T... 128 7e-29 UniRef50_Q0AUG6 Transcription antitermination protein nusG n=33 ... 127 9e-29 UniRef50_D1B6U2 Transcription antitermination protein nusG n=1 T... 127 1e-28 UniRef50_Q2LQ92 Transcription antitermination protein nusG n=4 T... 127 1e-28 UniRef50_B1I1L1 Transcription antitermination protein nusG n=3 T... 127 2e-28 UniRef50_A0LIY4 NusG antitermination factor n=2 Tax=Syntrophobac... 126 4e-28 UniRef50_B4R8J9 Transcription antitermination protein nusG n=157... 125 6e-28 UniRef50_C8XBG0 Transcription antitermination protein nusG n=4 T... 125 6e-28 UniRef50_Q1AU17 Transcription antitermination protein nusG n=1 T... 123 1e-27 UniRef50_C7PGB9 NusG antitermination factor n=1 Tax=Chitinophaga... 123 2e-27 UniRef50_C8WBL1 Transcription antitermination protein nusG n=7 T... 123 2e-27 UniRef50_D1NBR2 Transcription antitermination protein nusG n=1 T... 123 2e-27 UniRef50_P0AA01 Transcription antitermination protein nusG n=217... 123 2e-27 UniRef50_Q9CK84 Transcription antitermination protein nusG n=81 ... 122 3e-27 UniRef50_Q9CBK0 Transcription antitermination protein nusG n=4 T... 122 4e-27 UniRef50_A9ECY4 Putative uncharacterized protein n=1 Tax=Kordia ... 122 4e-27 UniRef50_P27309 Transcription antitermination protein nusG n=58 ... 122 5e-27 UniRef50_B8DVU5 Transcription antitermination protein nusG n=21 ... 122 5e-27 UniRef50_C7RDB1 Transcription antitermination protein nusG n=2 T... 121 7e-27 UniRef50_B5YJ95 Transcription termination factor NusG domain pro... 121 7e-27 UniRef50_A4QBE9 Transcription antitermination protein nusG n=16 ... 120 2e-26 UniRef50_B0RIR6 Transcription antitermination protein nusG n=16 ... 119 3e-26 UniRef50_A4XLK3 Transcription antitermination protein nusG n=10 ... 119 5e-26 UniRef50_Q1IKV1 Transcription antitermination protein nusG n=1 T... 118 6e-26 UniRef50_C4V5M2 Transcription antitermination protein nusG n=2 T... 117 1e-25 UniRef50_B3QYK9 Transcription antitermination protein nusG n=3 T... 117 1e-25 UniRef50_C2KN14 Transcription antitermination protein nusG n=3 T... 117 2e-25 UniRef50_C7NC81 Transcription antitermination protein nusG n=10 ... 117 2e-25 UniRef50_B6G0A9 Transcription antitermination protein nusG n=3 T... 115 4e-25 UniRef50_Q1ITB0 Transcription antitermination protein nusG n=1 T... 115 4e-25 UniRef50_D2MPP9 Transcription termination/antitermination factor... 115 5e-25 UniRef50_Q83MQ7 Transcription antitermination protein nusG n=1 T... 115 5e-25 UniRef50_B2KEU4 Transcription antitermination protein nusG n=2 T... 115 5e-25 UniRef50_C1A6N2 Transcription antitermination protein nusG n=1 T... 115 6e-25 UniRef50_P68893 Transcription antitermination protein nusG n=32 ... 115 6e-25 UniRef50_A3I2H8 NusG antitermination factor n=1 Tax=Algoriphagus... 114 7e-25 UniRef50_P57151 Transcription antitermination protein nusG n=17 ... 114 7e-25 UniRef50_B9CLA2 Transcription antitermination protein nusG n=1 T... 114 7e-25 UniRef50_C1Z9H7 Transcription antitermination protein nusG n=1 T... 114 1e-24 UniRef50_P52852 Transcription antitermination protein nusG n=51 ... 114 1e-24 UniRef50_C0QWX1 Transcription antitermination protein nusG n=2 T... 114 1e-24 UniRef50_Q1UZH8 Transcription antitermination protein nusG n=4 T... 114 1e-24 UniRef50_A6W3A4 Transcription antitermination protein nusG n=20 ... 113 2e-24 UniRef50_C8NX40 Transcription antitermination protein nusG n=1 T... 113 2e-24 UniRef50_Q9ZK20 Transcription antitermination protein nusG n=52 ... 112 3e-24 UniRef50_D0MHN6 Transcription antitermination protein nusG n=80 ... 112 3e-24 UniRef50_A6CA55 Transcription antitermination protein nusG n=1 T... 112 4e-24 UniRef50_C7GYQ7 Transcription antitermination protein nusG n=1 T... 112 4e-24 UniRef50_Q6AP83 Transcription antitermination protein nusG n=1 T... 112 5e-24 UniRef50_B1ZPC3 Transcription antitermination protein nusG n=3 T... 111 7e-24 UniRef50_C4XIP4 Transcription antitermination protein nusG n=6 T... 111 1e-23 UniRef50_Q2RYZ3 Putative uncharacterized protein n=2 Tax=Salinib... 110 1e-23 UniRef50_Q2JTQ7 Transcription antitermination protein nusG n=10 ... 110 2e-23 UniRef50_Q1QKQ8 Transcription antitermination protein nusG n=1 T... 109 2e-23 UniRef50_P65591 Transcription antitermination protein nusG n=84 ... 109 3e-23 UniRef50_Q1D5E3 NusG-like protein n=2 Tax=Myxococcus xanthus Rep... 109 3e-23 UniRef50_UPI000174528A NusG antitermination factor n=1 Tax=Verru... 108 7e-23 UniRef50_B1VAN1 Transcription antitermination protein nusG n=6 T... 108 8e-23 UniRef50_A0Q872 Transcription antitermination protein nusG n=11 ... 107 8e-23 UniRef50_B3T6R2 Putative transcription termination factor nusG n... 107 1e-22 UniRef50_B3EL56 Transcription antitermination protein nusG n=8 T... 107 2e-22 UniRef50_C4LL90 Transcription antitermination protein nusG n=5 T... 107 2e-22 UniRef50_C0W699 Transcription antitermination protein nusG n=1 T... 107 2e-22 UniRef50_A6GCJ0 Transcription antitermination protein nusG n=1 T... 106 3e-22 UniRef50_B3E158 Transcription antitermination protein nusG n=3 T... 106 3e-22 UniRef50_P36265 Transcription antitermination protein nusG n=48 ... 104 7e-22 UniRef50_UPI0001B49F58 putative LPS-related regulatory protein n... 104 9e-22 UniRef50_Q5LEP1 Putative LPS-related regulatory protein n=4 Tax=... 103 2e-21 UniRef50_A3ZLI3 Transcription antitermination protein nusG n=1 T... 103 2e-21 UniRef50_B0A697 Transcription antitermination protein nusG n=1 T... 102 3e-21 UniRef50_Q6MJ02 Transcription antitermination protein nusG n=1 T... 102 3e-21 UniRef50_B0VGC6 Transcription antitermination protein nusG n=1 T... 102 4e-21 UniRef50_B0SAG6 Transcription antitermination protein nusG n=6 T... 102 4e-21 UniRef50_Q982S4 Transcription antitermination protein nusG n=1 T... 101 6e-21 UniRef50_B2UQY7 Transcription antitermination protein nusG n=2 T... 101 7e-21 UniRef50_O83264 Transcription antitermination protein nusG n=4 T... 101 7e-21 UniRef50_Q87A27 Transcription antitermination protein nusG n=71 ... 101 7e-21 UniRef50_Q14PQ9 Transcription antitermination protein nusG n=1 T... 101 9e-21 UniRef50_Q7UWN7 Probable NusG-like protein-putative transcriptio... 101 1e-20 UniRef50_O51355 Transcription antitermination protein nusG n=22 ... 100 1e-20 UniRef50_D2R5P4 NusG antitermination factor n=1 Tax=Pirellula st... 100 2e-20 UniRef50_Q1VSS9 Transcription activator or transcription antiter... 99 4e-20 UniRef50_A7BC06 Transcription antitermination protein nusG n=2 T... 99 5e-20 UniRef50_D1AXH4 NusG antitermination factor n=1 Tax=Streptobacil... 99 6e-20 UniRef50_Q1Q133 Transcription antitermination protein nusG n=1 T... 98 7e-20 UniRef50_Q5GRY4 Transcription antitermination protein nusG n=8 T... 98 1e-19 UniRef50_C7PUF8 Transcription antitermination protein nusG n=4 T... 98 1e-19 UniRef50_UPI000197AEF0 hypothetical protein BACCOPRO_00694 n=1 T... 97 2e-19 UniRef50_C3MAS1 Putative uncharacterized protein n=1 Tax=Rhizobi... 97 2e-19 UniRef50_C6PET8 Transcription antitermination protein nusG n=1 T... 97 2e-19 UniRef50_B0SHW0 Transcription antiterminator n=2 Tax=Leptospira ... 96 4e-19 UniRef50_B8IE36 NusG antitermination factor n=3 Tax=Methylobacte... 95 8e-19 UniRef50_D0I9V3 Putative uncharacterized protein n=1 Tax=Grimont... 94 1e-18 UniRef50_Q3SSD1 Transcription antitermination protein nusG n=1 T... 94 1e-18 UniRef50_B3ETZ5 Transcription antitermination protein nusG n=1 T... 94 1e-18 UniRef50_B8I511 NusG antitermination factor n=6 Tax=Clostridium ... 93 2e-18 UniRef50_Q7D1F8 Transcription antitermination protein n=1 Tax=Ag... 93 3e-18 UniRef50_D0XNC5 NusG antitermination factor n=1 Tax=Brevundimona... 93 4e-18 UniRef50_B5Y935 Transcription antitermination protein nusG n=1 T... 93 4e-18 UniRef50_A6L3Q7 Putative transcriptional regulator UpxY-like pro... 92 5e-18 UniRef50_B9KHV6 Transcription antitermination protein nusG n=10 ... 92 5e-18 UniRef50_C8VZE8 Transcription antitermination protein nusG n=1 T... 92 5e-18 UniRef50_Q2S1Q0 Transcription antitermination protein nusG n=1 T... 91 2e-17 UniRef50_Q7UMY8 Transcription antitermination protein nusG n=1 T... 91 2e-17 UniRef50_P29397 Transcription antitermination protein nusG n=12 ... 89 4e-17 UniRef50_C4XFX3 Putative uncharacterized protein n=1 Tax=Mycopla... 89 6e-17 UniRef50_O84322 Transcription antitermination protein nusG n=14 ... 88 1e-16 UniRef50_C2NS75 Transcription antitermination protein nusG n=2 T... 88 1e-16 UniRef50_B9XD13 NusG antitermination factor n=1 Tax=bacterium El... 87 2e-16 UniRef50_D1CTG7 Transcription antiterminator NusG (Fragment) n=1... 87 2e-16 UniRef50_C5CGE4 Transcription antitermination protein nusG n=1 T... 86 3e-16 UniRef50_O67757 Transcription antitermination protein nusG n=7 T... 86 3e-16 UniRef50_C8WL22 NusG antitermination factor n=2 Tax=Coriobacteri... 86 3e-16 UniRef50_A5CC98 Transcription antitermination protein nusG n=2 T... 86 4e-16 UniRef50_Q2ST07 Transcription antitermination protein nusG n=4 T... 85 8e-16 UniRef50_C5EKF0 Predicted protein n=1 Tax=Clostridiales bacteriu... 84 1e-15 UniRef50_B7AH17 Putative uncharacterized protein n=1 Tax=Bactero... 84 1e-15 UniRef50_UPI00016C34F5 transcription antitermination protein nus... 84 1e-15 UniRef50_B0VET3 Putative uncharacterized protein n=1 Tax=Candida... 84 2e-15 UniRef50_A6DPM2 Transcription antitermination protein NusG n=1 T... 84 2e-15 UniRef50_UPI0001692BF2 putative transcription antiterminator n=1... 83 4e-15 UniRef50_C6LL07 Putative transcription antiterminator n=3 Tax=Cl... 81 8e-15 UniRef50_B8INV2 NusG antitermination factor n=1 Tax=Methylobacte... 81 1e-14 UniRef50_C0ZGR2 Transcription antitermination protein nusG n=1 T... 81 1e-14 UniRef50_Q4A951 Transcription antitermination protein n=4 Tax=My... 81 2e-14 UniRef50_B9JXL7 Transcription antitermination protein nusG n=3 T... 81 2e-14 UniRef50_A7V7E7 Putative uncharacterized protein n=2 Tax=Bactero... 80 2e-14 UniRef50_A7Z6E4 Transcription antitermination protein nusG n=1 T... 80 3e-14 UniRef50_A6UA20 NusG antitermination factor n=1 Tax=Sinorhizobiu... 79 4e-14 UniRef50_C3RLT4 NusG antitermination factor n=2 Tax=Bacteria Rep... 79 5e-14 UniRef50_C8WIA3 NusG antitermination factor n=1 Tax=Eggerthella ... 79 5e-14 UniRef50_A4YU22 Transcription antitermination protein nusG n=1 T... 79 6e-14 UniRef50_B8IIP1 Transcription antitermination protein nusG n=2 T... 79 6e-14 UniRef50_B0P702 Putative uncharacterized protein n=1 Tax=Anaerot... 79 6e-14 UniRef50_B1ZWG3 NusG antitermination factor n=1 Tax=Opitutus ter... 78 1e-13 UniRef50_C8PLY0 Transcription antitermination protein, NusG fami... 78 1e-13 UniRef50_B5CXQ3 Putative uncharacterized protein n=1 Tax=Bactero... 78 1e-13 UniRef50_Q6MDM6 Transcription antitermination protein nusG n=1 T... 78 1e-13 UniRef50_D0D588 Putative NusG antitermination factor n=1 Tax=Cit... 78 1e-13 UniRef50_A5IXI2 Transcription antitermination protein nusG n=1 T... 76 5e-13 >UniRef50_P0AFW1 Transcriptional activator rfaH n=162 Tax=Enterobacteriaceae RepID=RFAH_ECO57 Length = 162 Score = 228 bits (581), Expect = 6e-59, Method: Composition-based stats. Identities = 162/162 (100%), Positives = 162/162 (100%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD Sbjct: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITE 120 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITE Sbjct: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITE 120 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL Sbjct: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 >UniRef50_D2C1D2 NusG antitermination factor n=5 Tax=Gammaproteobacteria RepID=D2C1D2_DICD5 Length = 162 Score = 218 bits (557), Expect = 4e-56, Method: Composition-based stats. Identities = 116/162 (71%), Positives = 135/162 (83%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M++WYLLYCKRGQL RA+EHLERQ V CL+PMI LEKIVRGKRT VSEPLFPNYLFVEFD Sbjct: 1 MRAWYLLYCKRGQLLRAKEHLERQDVVCLSPMIALEKIVRGKRTEVSEPLFPNYLFVEFD 60 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITE 120 PE IHTTTI++TRGVSHFVRFG PA+VP VI L ++ VDP TP PGD+V ITE Sbjct: 61 PEHIHTTTISSTRGVSHFVRFGNLPALVPQQVIEDLQHHQCTTHVDPETPQPGDQVTITE 120 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G F G +AI+TEPDGEARSMLLLNL+NK+++ S+ N +FRK+ Sbjct: 121 GVFSGLEAIYTEPDGEARSMLLLNLLNKQVRQSIDNRQFRKV 162 >UniRef50_A0KGQ9 Transcriptional activator RfaH n=3 Tax=Aeromonadaceae RepID=A0KGQ9_AERHH Length = 183 Score = 189 bits (481), Expect = 2e-47, Method: Composition-based stats. Identities = 69/165 (41%), Positives = 99/165 (60%), Gaps = 3/165 (1%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M+ WYL YCK + RA+ HLE Q + PM+ +EK+ RGKR V EP+FPNYLF+ D Sbjct: 18 MKKWYLAYCKPKEEARARAHLEAQGIESYYPMVEIEKLRRGKRVPVREPMFPNYLFIYVD 77 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD---PATPYPGDKVI 117 E + T+ +TRG+S + FG + S +++QL D + P GDKV+ Sbjct: 78 LEEVTPVTLKSTRGISRIIHFGREWTSISSQLVYQLMSRDDSDEARASYASLPTQGDKVL 137 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 I G GF+AI+ EPDG+ R++LL++L+N+E S N FR+L Sbjct: 138 IESGPLAGFEAIYLEPDGDKRAILLVSLLNQETSSSFDNQSFRRL 182 >UniRef50_C1DDG1 RfaH n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DDG1_LARHH Length = 172 Score = 186 bits (472), Expect = 3e-46, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 81/161 (50%), Gaps = 2/161 (1%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WYL++ K Q Q A ++L++Q C PM+ EK+ +G+ E LFP YLF+ Sbjct: 11 WYLVHTKPRQEQCALQNLQQQGYQCYLPMLATEKLRQGRLVVSEEALFPRYLFIRLGLGQ 70 Query: 64 IH--TTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEG 121 I +TRGV+ VRFG PA + +I +L + G++V +T+G Sbjct: 71 SDKSWAPIRSTRGVNQLVRFGTEPARIDDGLIERLRGHDAARANPEPLFRTGERVRLTDG 130 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 F G + I+ DGE+R M+L+ + + + V RK+ Sbjct: 131 PFAGIEGIYQMTDGESRVMVLIEFLTRPVVARVAPGSLRKV 171 >UniRef50_Q82X31 Putative transcriptional activator n=1 Tax=Nitrosomonas europaea RepID=Q82X31_NITEU Length = 165 Score = 184 bits (468), Expect = 9e-46, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 90/161 (55%), Gaps = 3/161 (1%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD--P 61 WYL++ K Q + A ++L++Q C PM+ +EK+ G T V EPLFP YLF++ + Sbjct: 3 WYLVHTKPKQEKCAFQNLQQQGYRCYLPMLPVEKLHLGNLTVVDEPLFPRYLFIQLEQGD 62 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY-PGDKVIITE 120 I +TRGV+ V FG+ PA + +I L + + P + PG++V +TE Sbjct: 63 SAKSWVPIRSTRGVNRLVCFGSEPARIDDILIDLLRMQEASFQHKPERLFKPGERVRLTE 122 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 GAF G + I+ +GE R M+L+ L++K + V T RK Sbjct: 123 GAFAGIEGIYQMAEGERRVMVLIELLSKPVAMRVSPTSLRK 163 >UniRef50_C7RAP1 Transcriptional acivator RfaH n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RAP1_KANKD Length = 167 Score = 184 bits (467), Expect = 1e-45, Method: Composition-based stats. Identities = 67/161 (41%), Positives = 97/161 (60%), Gaps = 1/161 (0%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 +SWYL+ K Q RA EHL+ Q +NC+ P++ +E+I+RGKR EPLFP YLFVE Sbjct: 6 KSWYLINSKPKQELRALEHLKNQEINCVLPVLEVERIIRGKRQKAIEPLFPGYLFVELQT 65 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDI-VDPATPYPGDKVIITE 120 + I +TRGV FVRFG P VP +V+ L + ++ P GDKVIIT+ Sbjct: 66 NGQGWSKIRSTRGVRDFVRFGGVPGRVPDSVLEHLLILDTSFTPIETNAPGAGDKVIITD 125 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 G F+ + +F +GE RS++LL ++ K + ++N + RK Sbjct: 126 GPFKDLEGVFKISNGEKRSIVLLTILGKVTEMELENKQLRK 166 >UniRef50_Q7MMR1 Transcription antiterminator n=58 Tax=Vibrionales RepID=Q7MMR1_VIBVY Length = 168 Score = 182 bits (463), Expect = 3e-45, Method: Composition-based stats. Identities = 73/165 (44%), Positives = 106/165 (64%), Gaps = 5/165 (3%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M+ WYLLYCKRG+ RA++HLE Q V C P I +EKI+RGKR SEPLFP+Y+FV FD Sbjct: 1 MKKWYLLYCKRGEQIRAKQHLENQGVECFYPTIEVEKILRGKRQIKSEPLFPSYIFVRFD 60 Query: 61 PEVIH-TTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD----PATPYPGDK 115 E+ TT+ +TRGV FV+FGA P + +I++L + + + P PGD Sbjct: 61 FEIGPTFTTVRSTRGVVDFVKFGAHPKELQGDLIYELKLLEQEGHQSALQGSNLPKPGDS 120 Query: 116 VIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 + + G F G +AIF E DGE RS++L+ +I++ + S++N++ Sbjct: 121 IKVKSGQFAGIEAIFQEQDGETRSIMLVKMISQTVPVSIENSDLE 165 >UniRef50_A0XZ39 Transcriptional activator RfaH n=2 Tax=Alteromonadales RepID=A0XZ39_9GAMM Length = 161 Score = 181 bits (460), Expect = 8e-45, Method: Composition-based stats. Identities = 64/160 (40%), Positives = 99/160 (61%), Gaps = 1/160 (0%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M+SWYL+ CK Q +RA+ +L Q + P++T EK+V+ +RT LFPNYLFV D Sbjct: 1 MESWYLVICKPRQEERAKANLNNQGIEAFYPILTTEKLVKSRRTVKQVALFPNYLFVCLD 60 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITE 120 + + TRG+ FV +GA+ +VP A+I L+ + + V+ P GD V ++ Sbjct: 61 SKNGPFAAVKNTRGIGGFVTYGANYQVVPLAIIEHLNNHT-SNTVESQLPKQGDAVSVSN 119 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 +F+ AI+ EPDG+ RS+LL+NL+NK+++ SV NT+ Sbjct: 120 HSFKNIDAIYKEPDGDMRSILLINLLNKQVEMSVDNTDIE 159 >UniRef50_Q4K6G2 Transcriptional activator RfaH n=2 Tax=Pseudomonadaceae RepID=Q4K6G2_PSEF5 Length = 239 Score = 180 bits (457), Expect = 2e-44, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 89/159 (55%), Gaps = 3/159 (1%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WYL+ CK Q RA+E+L RQ +C P E++V+G+R + +E LFP YLF+ + + Sbjct: 84 WYLVQCKPRQDLRAEENLRRQGFHCYRPQRGCERVVQGRRQSGTESLFPGYLFIALEHDA 143 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEGAF 123 + +TRGV+ V F P VP ++I L +D + PY G +V ITEG F Sbjct: 144 -SWAPLRSTRGVNRLVAFNGQPLAVPVSLIESLRQRVTD--MDTSLPYKGTRVCITEGCF 200 Query: 124 EGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 +AIF G+ R +LLL L+N++ + + + RK+ Sbjct: 201 ADLEAIFESSIGDERVVLLLTLLNQQRRIELPLSSIRKI 239 >UniRef50_A1WZB7 Transcription antitermination protein nusG n=1 Tax=Halorhodospira halophila SL1 RepID=A1WZB7_HALHL Length = 175 Score = 178 bits (453), Expect = 5e-44, Method: Composition-based stats. Identities = 48/161 (29%), Positives = 79/161 (49%), Gaps = 2/161 (1%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 +WYL+Y K Q +RA +L+ Q C PM + + + V EP+FP YLF+ Sbjct: 14 AWYLVYSKPRQEERAWWNLDHQGFRCFLPMARFRRRRQRRYQTVIEPMFPRYLFIRLAAG 73 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD--PATPYPGDKVIITE 120 + + I +T GVS VRFG PA VP ++ + D P PG++V + + Sbjct: 74 LEDWSPIRSTTGVSGLVRFGTWPARVPDGLVDTIRARIEDGHCDLAPEPLQPGERVRVLD 133 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 G F+ ++ IF + R M+LL++ + +V + + Sbjct: 134 GPFQSYEGIFRASRSDERVMILLDVAGQHTTLTVSQHQIER 174 >UniRef50_Q1QVL5 Transcription antitermination protein nusG n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QVL5_CHRSD Length = 182 Score = 178 bits (452), Expect = 5e-44, Method: Composition-based stats. Identities = 56/162 (34%), Positives = 86/162 (53%), Gaps = 4/162 (2%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY++ CK G+ RA EHL Q P++ ++K R K ++EPLFP+YLF+ D Sbjct: 19 WYVVQCKGGESFRAGEHLTNQGYRVFHPVLEVQKKRRNKLVWIAEPLFPHYLFIHLDRVA 78 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT----PYPGDKVIIT 119 + I +TRGV V FG P VP A+I L+ D + PG+ V IT Sbjct: 79 SNWRPIRSTRGVLKLVGFGDEPLPVPDALIETLAARAHLDEASRTSGNAYFRPGEIVEIT 138 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 EG F+ QA+F G+ R+++LLN+++ + + + R+ Sbjct: 139 EGPFQALQAVFDTQQGDERAIVLLNMLHHQQRLELPVGHLRR 180 >UniRef50_A6F1J5 Transcriptional activator RfaH n=2 Tax=Marinobacter RepID=A6F1J5_9ALTE Length = 163 Score = 178 bits (451), Expect = 7e-44, Method: Composition-based stats. Identities = 57/158 (36%), Positives = 80/158 (50%), Gaps = 1/158 (0%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY L K Q RA HL+ Q + C P IT+EKI GKRT EPLFP YLFV + Sbjct: 3 WYALQHKPSQGDRALTHLQNQDIACFYPKITVEKIKAGKRTKQLEPLFPGYLFVNLEQTD 62 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEGAF 123 + +TRG+ V F PA +P VI + + + PG V + EG F Sbjct: 63 PMWAKLRSTRGILRIVSFANKPAAIPDDVIQHIKDSLHT-VAEQGGIKPGQAVELDEGPF 121 Query: 124 EGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 +G +AIF DGE R+++L++ + K+ V + + Sbjct: 122 KGIEAIFQAYDGEERAIVLISFMQKQQTVKVPLSTLHR 159 >UniRef50_A4WZX9 Transcription antitermination protein nusG n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4WZX9_RHOS5 Length = 174 Score = 177 bits (449), Expect = 1e-43, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 2/160 (1%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WYL+ K + A+ +L RQ + +P K + + LFP YLFV F+PE Sbjct: 13 WYLVQTKPNAFRIAERNLLRQDFSVFSPTQNQTKKHGTRFRHTVQQLFPGYLFVRFNPEF 72 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD--IVDPATPYPGDKVIITEG 121 INAT GVS V FG P+ VP A+I L D ++ P GD+V I G Sbjct: 73 PQWRAINATYGVSRLVTFGNIPSPVPHALIAGLRQRCANDGTLLPPEQLSLGDRVRIISG 132 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 F + A + + + R +LL+++ + K ++ +K Sbjct: 133 PFADYVATVEQIEPDKRVWILLDILGGQTKTQIQIAALQK 172 >UniRef50_Q3J8A9 Transcriptional activator RfaH n=1 Tax=Nitrosococcus oceani ATCC 19707 RepID=Q3J8A9_NITOC Length = 174 Score = 177 bits (449), Expect = 1e-43, Method: Composition-based stats. Identities = 62/164 (37%), Positives = 93/164 (56%), Gaps = 3/164 (1%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + WYL+YCK Q + AQE+LERQ P++ + +R A EPLFP YLF+ D Sbjct: 9 KFWYLIYCKPRQERLAQENLERQNFETYLPLVRQMRRRAYRRIATVEPLFPRYLFIHLDT 68 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD-IVDPATP--YPGDKVII 118 E + +I +T GV VRFGA PA VP +I +L ++ D I D A+P G +V++ Sbjct: 69 EKDNWGSIRSTIGVISLVRFGAQPAHVPDTLIRELQTHEGSDGIQDLASPDFRKGQQVLV 128 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 EG G + I+ +G+ R+ +LL ++ K+IK V ++L Sbjct: 129 EEGLLAGHEGIWLTSNGKKRAHILLEIMGKQIKTEVNENWLKRL 172 >UniRef50_Q0ACI7 Transcription antitermination protein nusG n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0ACI7_ALHEH Length = 177 Score = 176 bits (448), Expect = 1e-43, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 4/165 (2%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 ++WYL+Y K Q + A+++L RQ + P + + K +R V EP+FP YLFVE D Sbjct: 13 RAWYLIYTKPRQEEAARDNLGRQGFHAWLPRVRVVKRRGTRRVPVVEPMFPRYLFVELDS 72 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK----DIVDPATPYPGDKVI 117 + I++T GV+ VRFG PA VP ++ L + D+ P GD V Sbjct: 73 AYQDWSPISSTLGVTSLVRFGGVPAKVPGPLVAALQARADEDDICDLSARQQPRAGDTVR 132 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 + GAF G++A+F G R ++LL + K+ + ++ + + Sbjct: 133 VAHGAFAGYEAVFQARSGRERVLVLLEVAGKQSRVTLPADDIDPV 177 >UniRef50_Q1YPV4 Transcriptional activator RfaH n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YPV4_9GAMM Length = 169 Score = 175 bits (445), Expect = 3e-43, Method: Composition-based stats. Identities = 67/161 (41%), Positives = 98/161 (60%), Gaps = 2/161 (1%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M+SW+LL K Q RA E+LERQ V PMI +EK+ RG R E LFP YLFV FD Sbjct: 1 MESWFLLQTKSKQEGRAVENLERQGVKSFCPMIKVEKLSRGSRVVKEEALFPGYLFVNFD 60 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKP--KDIVDPATPYPGDKVII 118 + +TT+ +TRGVSHFV P VP ++I+QL + D + P G+++ I Sbjct: 61 QSSVSSTTVRSTRGVSHFVTSAGLPVKVPESLINQLMLRTDAGNDETVSSLPSKGERLQI 120 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 +G F G A+F++PDG+ R+++L+NL+N+++ S+ Sbjct: 121 IDGPFRGLNAVFSQPDGDRRAIVLINLLNQQVSASLPFASL 161 >UniRef50_C8QDS8 Transcriptional acivator RfaH n=2 Tax=Pantoea sp. At-9b RepID=C8QDS8_9ENTR Length = 170 Score = 174 bits (441), Expect = 1e-42, Method: Composition-based stats. Identities = 71/158 (44%), Positives = 104/158 (65%), Gaps = 1/158 (0%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGK-RTAVSEPLFPNYLFVEF 59 M++WY+ K Q +RAQ+ L Q V CL P+ + ++ G R +PLFPNY+FV F Sbjct: 1 MENWYVAQTKYAQEKRAQQQLLSQGVTCLFPVFSEVRLQNGGIRRIAEQPLFPNYIFVRF 60 Query: 60 DPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIIT 119 DPEV+HTT I ATRGVS + FG P++VP +VI +L+ + ++ P GD+V+I Sbjct: 61 DPEVVHTTAIKATRGVSSLISFGGLPSVVPDSVIIRLNQGWERAPLNTDAPVHGDRVVIR 120 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNT 157 +GAFEG +A++ EPDG R+MLLL L+N+E++ V+ Sbjct: 121 DGAFEGLEAVWYEPDGLKRAMLLLTLMNREVRVPVEGH 158 >UniRef50_UPI0000E0F5F6 transcriptional activator RfaH n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0F5F6 Length = 176 Score = 174 bits (441), Expect = 1e-42, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 93/160 (58%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + WYLLYCK + RA HL Q ++ P + K++RGKR V E LFPNY+F + D Sbjct: 15 KVWYLLYCKAKEEGRAVMHLANQGIDAFYPKANITKVLRGKRQTVEEALFPNYVFAQLDH 74 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEG 121 +V + T++ +TRGV FV+ G V A+I D +D A P GD V++ Sbjct: 75 DVHNFTSVRSTRGVIGFVKQGKDYQKVSQALIDVFVQCDTVDKLDSALPTKGDNVMLQHP 134 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 ++ AI+ EP GE R++LL++L+NK ++ V N++F K Sbjct: 135 QYQNIPAIYQEPKGENRAILLIHLLNKPVELVVDNSQFTK 174 >UniRef50_Q48H23 Transcriptional activator RfaH n=7 Tax=Pseudomonas RepID=Q48H23_PSE14 Length = 170 Score = 173 bits (439), Expect = 2e-42, Method: Composition-based stats. Identities = 55/159 (34%), Positives = 80/159 (50%), Gaps = 2/159 (1%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WYL+ K Q RA+EHL RQ C P+ K + A EPLFP YLF++ D Sbjct: 10 WYLIQTKPRQEARAEEHLRRQHFQCYRPLQVDVKKTAARVQA-DEPLFPGYLFIQMDQVQ 68 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEGAF 123 + I +TRGVS V FG P V +I Q+ A GD V+IT G++ Sbjct: 69 DNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLSTPAPK-ARFIQGDPVMITTGSW 127 Query: 124 EGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 +AIF DG R+++LLN++ ++ K + + ++ Sbjct: 128 SDVEAIFLSEDGTERAVILLNMLQRQQKMGLPISSLSRV 166 >UniRef50_A1T084 NusG antitermination factor n=1 Tax=Psychromonas ingrahamii 37 RepID=A1T084_PSYIN Length = 169 Score = 173 bits (438), Expect = 2e-42, Method: Composition-based stats. Identities = 68/164 (41%), Positives = 93/164 (56%), Gaps = 4/164 (2%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 W+++YCK + RAQ +LE Q V P I EKI+R K+ V EPLFP+YLFV Sbjct: 4 QWFVVYCKSREELRAQRNLENQGVYSFFPKICKEKILRSKKKVVEEPLFPSYLFVNISKN 63 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAV---IHQLSVYKPKDIVDPATPYP-GDKVII 118 + I +TRG+++FV+FG S A +P I QL K V+ Y GDK+ I Sbjct: 64 DEKFSAIRSTRGINNFVKFGLSIATIPDQQIKKIEQLCHVNNKLAVNSEDVYQNGDKIEI 123 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G F+G AIF DG RSMLLL ++N++ S KN+ +K+ Sbjct: 124 LSGPFKGLTAIFNIEDGLERSMLLLKILNQDNNISFKNSALKKV 167 >UniRef50_A9ND88 Transcriptional activator RfaH n=6 Tax=Coxiella burnetii RepID=A9ND88_COXBR Length = 167 Score = 172 bits (436), Expect = 4e-42, Method: Composition-based stats. Identities = 53/159 (33%), Positives = 78/159 (49%), Gaps = 2/159 (1%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 WYL+Y K Q + A+E+LERQ P I + + G ++EPLFP YLF+ + + Sbjct: 6 DWYLIYTKPRQERIAEENLERQGYRIYLPFIQVNRRRLGCYQLITEPLFPRYLFILLNID 65 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDP--ATPYPGDKVIITE 120 + I +TRGVS VRFG PA VP + L + V P + G +V I + Sbjct: 66 KDNWGPIRSTRGVSALVRFGGIPAKVPPDFVQFLKNNETSASVPPKVSLFQKGQRVQIID 125 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 G G++ +F G R LLL+++ K + V Sbjct: 126 GVMAGYEGVFEMYSGAKRVTLLLDMVGKVTRVEVPLDSV 164 >UniRef50_A6FES1 Putative transcriptional activator RfaH n=1 Tax=Moritella sp. PE36 RepID=A6FES1_9GAMM Length = 174 Score = 171 bits (433), Expect = 8e-42, Method: Composition-based stats. Identities = 64/162 (39%), Positives = 91/162 (56%), Gaps = 3/162 (1%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + WYLLYCK + RA +L+ Q + P +T+EK +R K +FPNYLFV D Sbjct: 6 KDWYLLYCKGKEEPRALINLKNQGIESFYPTMTVEKKLRNKLICQEIAIFPNYLFVAIDK 65 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSV---YKPKDIVDPATPYPGDKVII 118 + +I +TRGV FV+ GA+ VP+A++ +L + K + G+ VII Sbjct: 66 NTANFNSIRSTRGVIDFVKCGANYTKVPAALVTELRATQRCRDKSANEVTVFSEGETVII 125 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 +GAF+G +AI+ DG RSMLL+NLIN SV N E + Sbjct: 126 QDGAFKGIEAIYQCKDGLERSMLLINLINHSTTMSVANGEIK 167 >UniRef50_B1KMD8 Transcriptional acivator RfaH n=21 Tax=Shewanella RepID=B1KMD8_SHEWM Length = 179 Score = 170 bits (431), Expect = 1e-41, Method: Composition-based stats. Identities = 54/177 (30%), Positives = 83/177 (46%), Gaps = 15/177 (8%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M++WYLLYCK RA +L Q ++ P I EK V+G+ + PLFP YLF+ D Sbjct: 3 MKAWYLLYCKPRGEARAVHNLTLQNIDTYLPTIGEEKRVKGEVSIKRIPLFPGYLFINID 62 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK---------------DIV 105 P+V I++TRGV V + ++IH + + + K D Sbjct: 63 PQVTSVARIHSTRGVGRIVGCNELMTSIDDSIIHSIRLREHKLLSELLPASELSQKCDGS 122 Query: 106 DPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 PGD+V TEG F + IF E G+ R +L ++ ++ + SV + + Sbjct: 123 STVEINPGDQVKFTEGPFADLEGIFAEKSGDKRCHVLFEIMGQKKRVSVPRDSIKPV 179 >UniRef50_A6FV14 Transcription antitermination protein nusG n=2 Tax=Rhodobacteraceae RepID=A6FV14_9RHOB Length = 177 Score = 168 bits (427), Expect = 4e-41, Method: Composition-based stats. Identities = 46/154 (29%), Positives = 69/154 (44%), Gaps = 2/154 (1%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WYL+ K + A +L+RQ+ PM + + GK +PLFP Y+FV D Sbjct: 9 WYLVQFKPNSHKIAARNLQRQSFQTFLPMQDVTRRRAGKFHTAPQPLFPGYMFVSLDTIR 68 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD--IVDPATPYPGDKVIITEG 121 INAT GVS V P VP +++ L D ++ P T PG++V + G Sbjct: 69 GPWRQINATLGVSKLVSVAGRPQPVPDTLVNALLERCDDDGKLLPPETFSPGEQVTLRSG 128 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVK 155 F F A + + R +LL + + + V Sbjct: 129 PFASFVATVEKMQPDRRVWVLLEFMGQATRIQVD 162 >UniRef50_Q3KCF2 Transcriptional activator RfaH n=1 Tax=Pseudomonas fluorescens Pf0-1 RepID=Q3KCF2_PSEPF Length = 178 Score = 163 bits (414), Expect = 1e-39, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 3/161 (1%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 +WYLL CK Q +RA +L +Q P + E+++RGKR V E LFP YLF++ + Sbjct: 10 NWYLLQCKPRQDERAHLNLLQQNYVVFHPQLVSERVIRGKRQRVQESLFPGYLFIQLSRD 69 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDP--ATPYPGDKVIITE 120 + + +TRGVS FV F PA V VI L + + PG+ + I Sbjct: 70 D-NWAPLRSTRGVSRFVEFNHGPATVAEHVIEHLRARCLESTLSEPDEALKPGENLQIVS 128 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 G + +F G R M+LL +N+E + + + Sbjct: 129 GPLAPLEGVFLGLHGTDRVMILLQFLNREQPVCLPLSVIER 169 >UniRef50_A6GM36 NusG antitermination factor n=1 Tax=Limnobacter sp. MED105 RepID=A6GM36_9BURK Length = 179 Score = 161 bits (409), Expect = 5e-39, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 80/166 (48%), Gaps = 5/166 (3%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTA-VSEPLFPNYLFVEF 59 M WY++Y K Q A E+L+RQ N P ++K G+ T V EPLFP Y+F++ Sbjct: 13 MAQWYVMYTKPRQETVALENLQRQNYNVFFPQARVQKRKTGQGTVQVVEPLFPRYMFIQL 72 Query: 60 DPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK----DIVDPATPYPGDK 115 + V + + +T+G V+FG P++VP +I + D++ G + Sbjct: 73 EVGVSDFSKLRSTKGCVDLVKFGGKPSVVPIELIELIQHQLDSDSVLDLLKLNELEVGGE 132 Query: 116 VIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 V + EG FEG + R ++LLN++ E + ++ K Sbjct: 133 VRVAEGPFEGMMGKIAARKSDQRVIVLLNVLGAERSVELAQSQLDK 178 >UniRef50_Q2WBC3 Transcription antitermination protein nusG n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2WBC3_MAGSA Length = 167 Score = 161 bits (408), Expect = 7e-39, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 4/164 (2%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M+SW++++ + A HL+RQ + P + + K V PLFP YLF+ D Sbjct: 1 MESWFVVHTHANAEKIAAGHLQRQHFDVYLPQYSKRRSHARKVEWVKAPLFPRYLFLRMD 60 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIV----DPATPYPGDKV 116 P++ +I +T GV V G P + +I ++ + + + G ++ Sbjct: 61 PDLTPWFSIRSTVGVHSLVCRGGMPVPLGQVIIDEIRGREDDSGLVSLGEAMPFASGQRL 120 Query: 117 IITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 I EG +F D R +LLL+L+ ++++ V R Sbjct: 121 EIVEGPLAEQLGLFQGLDDMNRVVLLLDLLGRQVRVRVPLEAVR 164 >UniRef50_A3WUF1 Transcriptional antitermination protein, putative n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WUF1_9BRAD Length = 170 Score = 161 bits (407), Expect = 9e-39, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 4/163 (2%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 Q WY++ +A HL RQ P + + + PLFP YLFV D Sbjct: 6 QQWYVVQTHPHAEGKAAAHLRRQGFEVYLPRYARRRRHARRVDITASPLFPRYLFVAIDL 65 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYP----GDKVI 117 I +T GV++ V G PA VP V+ +L + P GD V Sbjct: 66 VHQRWRAIRSTVGVTNLVYSGDEPAPVPDDVVRRLKQREDSKGCVQLDLAPRFSAGDTVR 125 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 + +GAF +F R ++LL+L+ ++++ ++ Sbjct: 126 VVDGAFSDCLGLFESMSDGERVLVLLDLLGRKVRVTMDIDTIE 168 >UniRef50_Q0F316 Transcriptional activator RfaH n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F316_9PROT Length = 172 Score = 160 bits (406), Expect = 1e-38, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 6/157 (3%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + W+ + K Q A +LERQ PMI GK + P F YLFV Sbjct: 4 KQWFAIRVKPRQESLAAANLERQGFEVYLPMINTRISHAGKVSWQPRPFFAGYLFVHLSI 63 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIV------DPATPYPGDK 115 + TTI +T GV V FG + VI L ++ + + G+K Sbjct: 64 DEQRWTTIRSTVGVLAPVAFGTFYPPLSDQVIALLQARHDENGLIAVSSTPESPFRAGEK 123 Query: 116 VIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKH 152 V + +GA +G + +F E G+ R+++LL+ + K ++ Sbjct: 124 VRMLDGAMKGLEGVFIEMRGQDRALILLDWMKKSMRV 160 >UniRef50_Q0FE68 Transcription antitermination protein nusG n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FE68_9RHOB Length = 166 Score = 159 bits (402), Expect = 3e-38, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 2/161 (1%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + W++L K +A ++L RQ P+ + + + PLFP Y+F+ FD Sbjct: 3 KEWFILQFKPNSHHQATKNLTRQGFETFLPLTDITSRKTSRFINTTRPLFPGYMFITFDR 62 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKP--KDIVDPATPYPGDKVIIT 119 IN T GVS V F ++ +P+ ++ L V I+ GD+V I Sbjct: 63 TKPEWHKINNTYGVSRLVTFNSNLKSIPTTLVENLMVRCDLSSKILPVENLKKGDQVKIL 122 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 G F F A + + R +L++L++++ K Sbjct: 123 HGPFANFIATVETYETDQRIWVLMDLMSRKTKIQTPLDALE 163 >UniRef50_Q5QWY1 Transcription antiterminator RfaH n=2 Tax=Idiomarina RepID=Q5QWY1_IDILO Length = 165 Score = 159 bits (402), Expect = 4e-38, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 84/157 (53%), Gaps = 2/157 (1%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY++ K Q +RA +LE Q AP +T++K+ RG RT+V E +FP Y+FV+ D + Sbjct: 9 WYIVRTKPKQEERAILNLENQGFGVFAPELTVKKVRRGVRTSVVERMFPGYVFVKPDDII 68 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEGAF 123 + +T GV+ +RFG + VP I Q+ + D P GD V I +G F Sbjct: 69 EQFYKLRSTYGVAGVLRFGDNIPKVPQRWIDQMRGV--DQLTDEQAPQIGDTVEIQQGPF 126 Query: 124 EGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 GF A + DGE+R ++L + KE+K + E + Sbjct: 127 RGFLAKIVKLDGESRCFVMLEWMQKEVKANFSYKELQ 163 >UniRef50_B8KUX9 Transcription termination factor nusG domain protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KUX9_9GAMM Length = 214 Score = 158 bits (401), Expect = 4e-38, Method: Composition-based stats. Identities = 53/150 (35%), Positives = 65/150 (43%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + WY++ K A+ LERQ AP I L K RGK V EPLFP YLFV Sbjct: 21 RRWYVVASKPRSEGVAKSQLERQGFVTCAPRIKLRKRQRGKWQQVIEPLFPGYLFVALRL 80 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEG 121 V I +T G VR G VP AV+ L A PG V G Sbjct: 81 GVDDPAPIRSTLGCIGLVRMGREFVPVPEAVMQPLLSIGESPDASEAVFQPGQAVRFEAG 140 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKEIK 151 FEG IF P G+ R+ +L+ L+ + Sbjct: 141 PFEGLSGIFKMPKGQDRAEVLITLLGSSAR 170 >UniRef50_C6Y0K9 NGN domain protein n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y0K9_PEDHD Length = 168 Score = 154 bits (390), Expect = 8e-37, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 72/162 (44%), Gaps = 3/162 (1%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 ++WY++ ++A +L + P+ +++ ++ + PLFPNYLF+ + Sbjct: 8 KNWYVVVTYPNLERKALLNLLKNNFIAFLPLQKVQRKWSDRKKTIEIPLFPNYLFININE 67 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL-SVYKPKDIVDPATPYPGDKVIITE 120 + GV +V FG PA + I + + + D+ + GD V I Sbjct: 68 KDRFEA--LDIYGVKRYVTFGGRPAFISETDILNIKRIVESVDLYIEHSLVKGDAVKIIG 125 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G F+ I + G+AR + + +N+ + + +T RK+ Sbjct: 126 GPFKDMIGILFKKSGQARFGIRVESMNQTLSIEICHTLIRKV 167 >UniRef50_Q1NMQ2 NGN n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NMQ2_9DELT Length = 176 Score = 152 bits (384), Expect = 4e-36, Method: Composition-based stats. Identities = 39/159 (24%), Positives = 72/159 (45%), Gaps = 6/159 (3%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 +WY + K + + A++H Q P++ + + +R V P+FP YLF+ +PE Sbjct: 9 AWYAIRTKPHKEEMARQHYLNQQYTVYLPLMRVVRSHARRRQVVFRPVFPGYLFLRLNPE 68 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIV------DPATPYPGDKV 116 I+ATRG +RFG VP VI L + ++ V PG +V Sbjct: 69 TCDWAAIHATRGSIGPLRFGEHYVPVPDWVIEGLQAREDEEGVIAPGAFQKEKLVPGCEV 128 Query: 117 IITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVK 155 +T + F G+ +L++++ ++++ +V Sbjct: 129 EVTMADGSAGKGFFCSFRGKENVEILMDILKRQVRTTVP 167 >UniRef50_B1I6V9 Transcription antitermination protein nusG n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I6V9_DESAP Length = 173 Score = 152 bits (384), Expect = 4e-36, Method: Composition-based stats. Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 5/165 (3%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 W + K + A LE + + P I++ + + ++ EPLFP YLFV+ PE Sbjct: 4 QWCAVNTKPKKEDFAARQLEAKGLEVFLPRISVTRKRGASKFSLWEPLFPGYLFVKLLPE 63 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVY---KPKDIVDPATPYP-GDKVII 118 + +N T GV + G +P VP I + + P +P G +V + Sbjct: 64 PVQVQRVNWTPGVRRLLCAGDTPVPVPDEAIALIRQRVGPGGRLTPKPQAEFPAGSRVAV 123 Query: 119 TEGAFEGFQAIFTEP-DGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G F G + +P G R +LL L+ ++ + + +L Sbjct: 124 RHGPFAGLLGVVEKPMSGRGRVRVLLELLQRQTAVEIDAVDLDRL 168 >UniRef50_C7PUS0 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PUS0_CHIPD Length = 174 Score = 150 bits (380), Expect = 1e-35, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 68/162 (41%), Gaps = 4/162 (2%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 WY+ Y + ++ + + Q + P+ + + + PLFPNY+FV+ + Sbjct: 14 KWYVAYTRANFERKVAKDIVDQQIEHYLPLRRETRKWSDRLKQIEVPLFPNYIFVKIKLQ 73 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKP--KDIVDPATPYPGDKVIITE 120 H I GV V F P V I + + +DI GD+V IT+ Sbjct: 74 --HKVNILGIPGVLSLVSFSGQPVSVSEREIQHIRKIEERGQDIALEYYYCVGDRVRITQ 131 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G F G + I G+ R +L L I++ + ++ + ++ Sbjct: 132 GIFTGMEGILLRKSGQMRFVLKLPAISQAVSVEIEGDQLERI 173 >UniRef50_B8FH43 NusG antitermination factor n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FH43_DESAA Length = 178 Score = 150 bits (380), Expect = 1e-35, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 1/160 (0%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + WY LY K +L +++ P + + + +R + P+FP YLFV Sbjct: 10 KQWYALYTKSRHEACVNNYLAARSIESFYPQMRILSRRKDRRKMIDVPMFPGYLFVRAAL 69 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY-PGDKVIITE 120 +I G + +P I L + K+ ++ Y GD V+I Sbjct: 70 RSRQHLSILKAPGAVTLIGNTRGAIAIPEDTISSLRIVSQKEALETGPCYHAGDLVLIVS 129 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 G F G +F G + ++ ++ + + + + + + Sbjct: 130 GPFAGVTGVFMRNKGGGKILVNIDALGQSVAVEMGGADVQ 169 >UniRef50_A4EGG1 Transcriptional antitermination protein, putative n=1 Tax=Roseobacter sp. CCS2 RepID=A4EGG1_9RHOB Length = 172 Score = 146 bits (369), Expect = 3e-34, Method: Composition-based stats. Identities = 46/162 (28%), Positives = 71/162 (43%), Gaps = 3/162 (1%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 W++L K L A+ HL RQ L P+ + + R V +PLFP YLF Sbjct: 9 GWFVLQLKPNGLSLARTHLARQGFLTLMPLREVSQHARYGLRTVRQPLFPGYLFFSVTAR 68 Query: 63 VIHTTTINATRGVSHF-VRFGASPAIVPSAVIHQLSVYKPKD--IVDPATPYPGDKVIIT 119 I+ TRGV+ V PA +P+ + L +D + D A GD+V + Sbjct: 69 QINWPAAANTRGVTRIVVGTDGQPARLPADIAAGLLAITTEDGMLGDVADLQTGDQVGVV 128 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 G F G+ A D R LL++++ +E ++ + K Sbjct: 129 NGPFAGWMAKVVSADTPDRIQLLVDVMGRETAVNIAGRDLEK 170 >UniRef50_A3V684 Transcriptional activator RfaH n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V684_9RHOB Length = 171 Score = 146 bits (369), Expect = 3e-34, Method: Composition-based stats. Identities = 46/160 (28%), Positives = 71/160 (44%), Gaps = 1/160 (0%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 +W++ + L A +LERQ+V AP + K P FP Y+FV+ Sbjct: 9 AWHIAQLRPNGLLMALRNLERQSVAHFAPTELRTERRGAKFVTRDVPAFPGYVFVQPSAA 68 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVY-KPKDIVDPATPYPGDKVIITEG 121 +N+TRG++ V G PAIVP+ +I L + P DI GD V I +G Sbjct: 69 SGGVRAVNSTRGITKLVTLGQGPAIVPAGLIAALRIRFAPPDITPAPQFDQGDWVRILDG 128 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 F F A R LL++L+ + + +V ++ Sbjct: 129 PFAEFVAQVEATPAAERVYLLIDLMGRATRVAVDARSLKR 168 >UniRef50_B9KYX2 Transcription antitermination protein nusG n=5 Tax=Bacteria RepID=B9KYX2_THERP Length = 198 Score = 145 bits (367), Expect = 4e-34, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 11/170 (6%) Query: 3 SWYLLYCKRGQLQRAQEHL---------ERQAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+L+ G + +++L + + PM +I G+R V +FP Sbjct: 27 EWYVLHTYSGYENKVRQNLLHRVETMDVADKVFEVVIPMQEEIEIRGGQRHTVQRKVFPG 86 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQ-LSVYKPKDIVDPATPYP 112 Y+ V + + T GV+ FV G P + A + K + T P Sbjct: 87 YVLVRMILDDESWHVVRNTPGVTGFVGVGNRPVPLDRAEAEAIIRGAKAEQPKVRMTLLP 146 Query: 113 GDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 GD V I +G F F+ + E D E + +L++ +E ++ + + Sbjct: 147 GDVVRIIDGPFTDFRGVVDEVDNEKGKVRVLVSFFGRETPVTLDFLQVER 196 >UniRef50_Q01TC5 NusG antitermination factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01TC5_SOLUE Length = 193 Score = 145 bits (366), Expect = 5e-34, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 64/162 (39%), Gaps = 4/162 (2%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 W+ L Q LE + C P+ + + R + + P FP Y+F D Sbjct: 18 QWFALSVTPKLTQLVLMALEHKGYECFTPLQSSTRKRRDQVADMQVPAFPGYVFARID-- 75 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY--PGDKVIITE 120 V + T GV V +G PA V I L + + PY GD+V + E Sbjct: 76 VRFRLPVLVTPGVRGIVGYGRQPAPVDDGEIFALRRVMQSQLPAKSAPYLRTGDRVQLVE 135 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G G + + G R ++ + LIN+ + V++ R L Sbjct: 136 GPLSGLTGLLIQQKGANRVLVQVTLINQALAVDVESAWVRSL 177 >UniRef50_Q2CAE9 Transcriptional antitermination protein, putative n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CAE9_9RHOB Length = 162 Score = 145 bits (366), Expect = 5e-34, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 76/159 (47%), Gaps = 5/159 (3%) Query: 8 YCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTT 67 K L+ A ++L RQ + P+ + +RG+ +V++P+FP YLFV P Sbjct: 3 QIKPNGLRLATQNLARQGLAVFCPLQQASRRIRGQIRSVTKPVFPGYLFVSLAPAGGEMR 62 Query: 68 TINATRGVSHFVRFG-ASPAIVPSAVIHQLSVYKPKDIV----DPATPYPGDKVIITEGA 122 + TRGV+ V + P VP A+I +L + + + GD+V +T+G Sbjct: 63 AASYTRGVARLVTLDESGPKAVPDALIEELQARCTPEGILGPPEADQLDVGDRVWVTDGP 122 Query: 123 FEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 G + EAR LLL+L+ ++ + +VK R+ Sbjct: 123 LAGQVSRIIALAPEARIWLLLDLMGRQTRVAVKREAVRR 161 >UniRef50_D0LJE5 Transcription antitermination protein nusG n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJE5_HALO1 Length = 189 Score = 144 bits (365), Expect = 7e-34, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 14/172 (8%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAV---------NCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G QR +E L+++AV L P + + ++V+GKR ++ FP Sbjct: 18 KWYVVHTHAGYEQRVRETLQQRAVALGFKDNIGEILVPTLNVMEVVKGKRKTSTKKFFPG 77 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDP---ATP 110 Y+FV+ + I T V+ FV G +P VP + I + + P Sbjct: 78 YIFVQMEFTDSVYHLIRNTPKVTGFVG-GNTPQPVPESEISVIHNTMSDNHSKPRPKVMF 136 Query: 111 YPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 GD V +T+G F F A E + + +L+ + + + T+ K Sbjct: 137 EQGDNVRVTDGPFASFTATVEEVKPDKQKLRVLVTIFGRATPVELDFTQVEK 188 >UniRef50_C6XVK8 NGN domain protein n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XVK8_PEDHD Length = 176 Score = 144 bits (364), Expect = 8e-34, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 71/165 (43%), Gaps = 5/165 (3%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 ++ WY +Y + ++A + L + + P+ + ++ V EPL +YLFV Sbjct: 10 IKKWYPVYTQSRAEKKAYQALLSKGIEAYLPLQRQLRQWSDRKKWVEEPLIKSYLFVHIA 69 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKP---KDIVDPATPYPGDKVI 117 + T + T G+S F+ F A +P I +L + + + PG+K+ Sbjct: 70 RQQQ--TEVLMTTGISRFIYFSGKIAAMPDRQIEELKLLLASPYELEITEERLLPGEKIE 127 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 I G +G + E + + +L L I+ I +V + ++ Sbjct: 128 IKAGPLKGIRGEIIEYRSQKQLLLRLGDISHSIVVNVSASLIERM 172 >UniRef50_Q1Q029 Similar to transcription antitermination protein NusG n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q029_9BACT Length = 169 Score = 144 bits (364), Expect = 9e-34, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 68/163 (41%), Gaps = 6/163 (3%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 W+ ++ + ++ L + ++ P++ R ++ + PLFP YLFV + Sbjct: 8 WFAVHTRSRHEKQVDSFLREKNISSFLPLVKTISRRRDRKKFIDVPLFPGYLFVNITLD- 66 Query: 64 IHTTTINATRGVSHFVRFGAS--PAIVPSAVIHQLSVYKPKDI-VDPAT-PYPGDKVIIT 119 + I +TRGV + P+ +P A I+ L ++ +DP G KV + Sbjct: 67 -NLYEIKSTRGVVRIIGNEDDFIPSPIPDAEINNLKTLINSNVAIDPYKYLQKGTKVRVV 125 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G G + + + R ++ ++++ K + + + Sbjct: 126 SGPLIGLEGLLVKRKTNYRVVVSIDILQKSTSAEISIADIESI 168 >UniRef50_A1VS68 NusG antitermination factor n=2 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VS68_POLNA Length = 184 Score = 143 bits (362), Expect = 1e-33, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 66/160 (41%), Gaps = 5/160 (3%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 W+L + + A ++L++Q + P+ K + AV EP+F Y+F Sbjct: 23 WFLAHTRPRLETVALQNLQQQGFDVYLPLYKRLKKIDAGMQAVFEPMFSRYVFFRTTSLA 82 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLS----VYKPKDIVDPATPYPGDKVIIT 119 + +TRGV+ V FG+ A + ++ + + D+ + +T PG V Sbjct: 83 QSIAPVRSTRGVAQIVSFGSEFATIRPDMLDAIRQLEQLRNAADVAELSTLRPGHLVRFC 142 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 A G + + R +LL ++ ++ V + + Sbjct: 143 NSALSGLEGVVKSVSS-CRVAVLLEIMGRQQLVRVDHHQL 181 >UniRef50_C7PS65 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PS65_CHIPD Length = 170 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 68/153 (44%), Gaps = 4/153 (2%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 ++ WY LY ++ L V PM + + ++ V PLFP+Y+FV + Sbjct: 5 IEGWYALYTMPRHEKKLHTRLSELNVTSFLPMTRMLRTWHDRKKYVEMPLFPSYIFVYLN 64 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDI-VDPATPY--PGDKVI 117 + H + T G ++V+ G + + +IH + + + ++ + Y PG +++ Sbjct: 65 -NIEHYYNVLNTNGALYYVKTGNELSRISEQIIHYIRIVSEQSTGIELSADYFPPGKELL 123 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEI 150 I+ G GF + ++ ++L+ + + Sbjct: 124 ISSGPLAGFSCEVVSYKNSEKILVRVSLLQRSL 156 >UniRef50_C7M2W0 Transcription antitermination protein nusG n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M2W0_ACIFD Length = 243 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 70/176 (39%), Gaps = 17/176 (9%) Query: 3 SWYLLYCKRGQLQRAQEHL---------ERQAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++C G R +++L E + PM + ++ G+R V +FP Sbjct: 67 EWYVVHCYSGYENRVRQNLATRIRSLGLEDRIFEVEIPMEDVTELKNGRRVKVQRKVFPG 126 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDP------ 107 Y+ V + + + I T G++ FV G+ P + + + + + + P Sbjct: 127 YVLVRAEMDDEVWSAIRNTPGITSFVGSGSKPVPLSRKEVEAMFSFATPEELRPQPQRRS 186 Query: 108 -ATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 G+ V + EG F E + + + +L N+ +E + T+ K Sbjct: 187 TQEFEIGETVRVKEGPLADFVGEVAEVNADQLKLKVLFNIFGRETPVELDFTQVSK 242 >UniRef50_A5D5K3 Transcription antitermination protein nusG n=7 Tax=Bacteria RepID=A5D5K3_PELTS Length = 175 Score = 142 bits (359), Expect = 4e-33, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 69/172 (40%), Gaps = 11/172 (6%) Query: 2 QSWYLLYCKRGQLQRAQEHLER---------QAVNCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY+++ G + + +LE+ + L PM +I GK+ +FP Sbjct: 3 KKWYVVHTYSGYENKVKANLEKRIDSMNMEDKIFRILVPMEDEVEIKDGKKKVSKRKIFP 62 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQ-LSVYKPKDIVDPATPY 111 Y+ VE + T GV+ FV G+ P + A Q + ++ Sbjct: 63 GYVLVEMIMTDDSWYVVRNTPGVTGFVGSGSRPIPLNDAEARQIIRQMGVEEPRTRVDFT 122 Query: 112 PGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRKL 162 G+ + + G FE F E + E + +++++ +E + T+ K+ Sbjct: 123 VGENIRVISGPFENFIGQIEEINMEKSKVKVMISMFGRETPVELDFTQVEKI 174 >UniRef50_C0QI35 Transcriptional antiterminator (SH3-like protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI35_DESAH Length = 174 Score = 142 bits (358), Expect = 4e-33, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 4/163 (2%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 +SWY L K ++++++ P I + ++ + PLFP YLFV Sbjct: 5 KSWYTLLTKSRFENVVFNDIQKKSIEVFLPKIKKRSQRKDRKLMIDVPLFPGYLFVNITL 64 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA----TPYPGDKVI 117 + + ++ T G + + + P VPSA I L + + + T G++V+ Sbjct: 65 DPVTHLSVVKTTGAVRLLGYSSGPVPVPSAHIESLKIVTGTGLDVVSGTINTLQKGERVL 124 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 + G F G + F G+ R ++ + + + + + Sbjct: 125 VVRGPFSGVKGEFLRHKGKDRVIIKIETLGQFAGVEIDREDLE 167 >UniRef50_B0S060 Transcription antitermination protein nusG n=5 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S060_FINM2 Length = 193 Score = 139 bits (352), Expect = 2e-32, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 10/170 (5%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G + + ++E+ + P V G + +FP Sbjct: 24 KWYVVHTYSGHEGKVKVNIEKMVENRGYIDDIFEVVVPTEEYVSEVGGAKKLKERKIFPG 83 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPG 113 Y+FV+ + + TRGV+ FV + P V I + ++ G Sbjct: 84 YVFVKMTITDVSWYLVRNTRGVTGFVGPESKPVAVSEKEIQKFALKNQSYSKKEIDVNVG 143 Query: 114 DKVIITEGAFEGFQAIFTEPDGEARSM-LLLNLINKEIKHSVKNTEFRKL 162 D V I GAF I E + E +L++L ++ + + K+ Sbjct: 144 DNVNIVSGAFSDQVGIIEEINTEKAICKVLISLFGRDTSVEISFDDIEKI 193 >UniRef50_D1CD65 Transcription antitermination protein nusG n=5 Tax=Bacteria RepID=D1CD65_THET1 Length = 201 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 69/171 (40%), Gaps = 11/171 (6%) Query: 3 SWYLLYCKRGQLQRAQEHLERQ----AV-----NCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G + + L+ + + + + P + +I GKR V + +FP Sbjct: 29 QWYVIHTYSGYEDKVKRDLQHRVETMGMSDRIRDIIVPTVEEIEIREGKRHKVQKKVFPG 88 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA-TPYP 112 Y+ V + + T GV+ FV G P + + ++ ++ + Sbjct: 89 YVLVRMRMDDAAWNVVRYTPGVTGFVGSGTKPTPLDEKEVEKILQRMSEEPPKVKMSLRL 148 Query: 113 GDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRKL 162 G+ V I +G F F+ E + E + +L+++ + + + K+ Sbjct: 149 GEAVRIVDGPFTDFEGTVDEINEEKGKVKVLISIFGRPTPVELDFLQVEKI 199 >UniRef50_Q3AU98 Transcription antitermination protein nusG n=6 Tax=Chlorobiaceae RepID=Q3AU98_CHLCH Length = 197 Score = 138 bits (349), Expect = 5e-32, Method: Composition-based stats. Identities = 37/164 (22%), Positives = 73/164 (44%), Gaps = 4/164 (2%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 Q+WY +Y + ++ + L + VN P+ + ++ VSEPLF Y+FV Sbjct: 8 QNWYAVYVRSRYEKKVYQALLEREVNSFLPLYETIRQWSDRKKKVSEPLFRGYVFVNIAM 67 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLS--VYKPKDIVDPATPYP-GDKVII 118 + + T GV F+ G P+++ I L V +P+ I P G KV + Sbjct: 68 QQESI-KVLDTEGVVKFIGIGRKPSVIAEREIEWLKKLVREPEAISRTVASLPAGQKVRV 126 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G F+ + + + E++ ++ + I + ++ S+ + + Sbjct: 127 IAGPFKDMEGVVVKEGRESQIVIYFDSIMQGVEVSIYPDLLQPI 170 >UniRef50_Q6AIA2 Related to transcriptional activators n=1 Tax=Desulfotalea psychrophila RepID=Q6AIA2_DESPS Length = 193 Score = 138 bits (348), Expect = 6e-32, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 66/163 (40%), Gaps = 6/163 (3%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY + K + + A+ + +RQ P++ T FP YLF+ P Sbjct: 29 WYAIRTKNKKEEVAKFNYQRQGYTVYLPLLRKTVHHARSTTEKLVAFFPGYLFLNLAPAE 88 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT------PYPGDKVI 117 + T I +TRG + FG S +P VI L + K + A PG V Sbjct: 89 QNWTAIASTRGSLGALCFGDSYIEIPGWVISDLKAREDKGLSILAKDLIKENLTPGSVVT 148 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 + E +A+ G +LLN++++++K +V + Sbjct: 149 VNIPGLESVEAVVYSIRGSENVDVLLNILSRQVKTTVSLDRIK 191 >UniRef50_Q48MX6 Transcriptional activator RfaH n=1 Tax=Pseudomonas syringae pv. phaseolicola 1448A RepID=Q48MX6_PSE14 Length = 192 Score = 138 bits (347), Expect = 7e-32, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 2/148 (1%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + WYL+ CK GQ RA+E+L Q P I R T + PLFP YLF+ Sbjct: 42 KEWYLVQCKSGQDSRAEENLTAQGYANFRPTINASSESRSVNTKHNSPLFPGYLFIHLSA 101 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEG 121 + + +T+G+ V+FG V + +I + ++ D + Sbjct: 102 SD-NWAPVRSTKGILTIVKFGGRAHAVRNEIIQDIKTRAESLNYSHSSHSEKDSAPLDNR 160 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKE 149 I + E R++LL+ + +E Sbjct: 161 G-SEISDILSAKSHEERTLLLVGFLQRE 187 >UniRef50_A9DI26 NusG antitermination factor n=1 Tax=Kordia algicida OT-1 RepID=A9DI26_9FLAO Length = 170 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 67/164 (40%), Gaps = 6/164 (3%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 W++LY K ++ LE ++ P + ++ + PLFP+Y+FV + Sbjct: 6 GWHVLYVKSRWEKKVHNSLENISIKSFLPKTKTVQQWSDRKKTILTPLFPSYVFVYIE-S 64 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD-----PATPYPGDKVI 117 + + G ++RFG A V I+Q+ + ++ P P G+ Sbjct: 65 PLDFHKALSVDGACCYIRFGKEYARVTEKEINQIKLLVDSKEIEEIELNPTFPKIGEMKK 124 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 I +G G E + + ++ ++ + + I ++ F+K Sbjct: 125 IEQGPLSGLDCEIIEAENYNKIIVRISSLRQNILATIPLNSFKK 168 >UniRef50_C7PTI0 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PTI0_CHIPD Length = 174 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 66/162 (40%), Gaps = 4/162 (2%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 WY+LY ++ L + P+ T + + + PLFPNY+FV+ + Sbjct: 14 KWYVLYTYPLFEKKIGRQLALIDIIHYLPVKTEVRKWSDRLKRMEVPLFPNYIFVKTNL- 72 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK--DIVDPATPYPGDKVIITE 120 ++ T I GV FV + I+++ + D+ + GDK+ I Sbjct: 73 -LNKTPILGIPGVVRFVSVEGRAIAISEDDINKIRQIEQSRQDVEIESVYNTGDKIRILN 131 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G F G + + R ++ L +I + + + N + K+ Sbjct: 132 GVFSGLEGELYKRSNRLRVLIKLPVIAQAVSVEISNCDIEKI 173 >UniRef50_Q04WD1 Transcription antiterminator n=4 Tax=Leptospira RepID=Q04WD1_LEPBJ Length = 179 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 35/165 (21%), Positives = 71/165 (43%), Gaps = 6/165 (3%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 + WY LY ++ + L+ + + C P+I+ +K + V EP++P+Y+FV+ Sbjct: 7 VNEWYALYTNPRAEKKLKRLLQERKIECFLPLISKKKKWSDRWKVVEEPMYPSYIFVKIS 66 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK-----DIVDPATPYPGDK 115 I G HFV + P ++P ++ + ++ + PG K Sbjct: 67 F-FQDRVKILQLPGAHHFVFYSGKPYVIPDEDLNLIRIFLETYPDRIQVEIQERLLPGKK 125 Query: 116 VIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 ++I EG F GF+A + E + ++ +N ++ + Sbjct: 126 ILIQEGPFAGFKAEIIQRKNEKQIIVKFPGMNLMTSVTLDIKTLK 170 >UniRef50_Q2LVW1 Transcription antitermination protein nusG n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LVW1_SYNAS Length = 167 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 72/167 (43%), Gaps = 6/167 (3%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD- 60 SWY ++ + + L ++++ P I + + +R + PLFP YLFV+ Sbjct: 1 MSWYAVHTRSRHEDKVFTGLVQKSITTFLPKIEVWSKRKDRRKRIMTPLFPGYLFVDMPC 60 Query: 61 PEVIHTTTINATRGVSHFVR--FGASPAIVPSAVIHQLSVYKPK--DIVDPATPYPGDKV 116 + + T GV + G++P VP I + ++ + P+ G+ Sbjct: 61 LDNQAKLDVLKTFGVVRILGKPTGSAPIPVPDDKIDAIRRIVDSRVEVQNLQYPHVGEAA 120 Query: 117 IITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRKL 162 I +G F+G + + D + ++ + L+ + + + +++ K+ Sbjct: 121 RIVDGPFKGIEGTVIKTDYDKDLFVVTIELLQRSVAIKLDSSQIEKI 167 >UniRef50_C6QI43 NusG antitermination factor n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QI43_9RHIZ Length = 175 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 65/158 (41%), Gaps = 2/158 (1%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 W ++ + + A +L++Q AP+I PLFP YLF + Sbjct: 15 WVVVNAQAHREFVAASNLKKQGYEIYAPVIRKTTRHARISRESLTPLFPGYLFARWTAPD 74 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYP--GDKVIITEG 121 + I +T G+ VR G P+ + A++ L + ++ A G V G Sbjct: 75 MRWRPILSTVGIRSIVRNGNEPSRLDGAIVDALKAREKDGVIVRAESQREIGQIVRFARG 134 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 F+G A E + R ++L+ L+N+ K +V + Sbjct: 135 PFDGIAAEIVELCDKDRLVVLMTLLNRPTKVTVLEDQL 172 >UniRef50_B3DWJ1 Transcriptional activator RfaH, NusG family n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DWJ1_METI4 Length = 185 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 4/159 (2%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY L + + + A E+L+++ + P +KI K + V EPLFP YLF +F+ Sbjct: 11 WYCLSIQPKKEKLAVENLKKENIEVFFPQFQYQKIRSRKTSLVLEPLFPGYLFAKFNL-Y 69 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY--PGDKVIITEG 121 T + +T+GV V FG+S ++P + I +L + ++ + G + I EG Sbjct: 70 SKLTFVRSTKGVRKVVHFGSSYPVIPDSFIEELRIQFGEEGIKTIRERIDVGSTINIAEG 129 Query: 122 AFEGFQAIFTEPDG-EARSMLLLNLINKEIKHSVKNTEF 159 F+G+ I + R +LL + + ++ V E Sbjct: 130 PFQGYSCIVLGFIPAKERVRVLLEWLGRAVQIEVNLKEI 168 >UniRef50_A7FC44 Transcriptional activator n=1 Tax=Yersinia pseudotuberculosis IP 31758 RepID=A7FC44_YERP3 Length = 159 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 61/163 (37%), Positives = 86/163 (52%), Gaps = 19/163 (11%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGK--RTAVSEPLFPNYLFVE 58 M++WYLL K GQ+ R Q L+R VN +P I ++K+ V+EP+FP YLFVE Sbjct: 1 MKNWYLLSYKYGQVNRVQFGLDRLGVNSFSPSIQVKKVRSDSGTIRLVNEPMFPTYLFVE 60 Query: 59 FDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVII 118 FD E IHTTTI++T GV++FV+FG P +P ++IHQL ++ Sbjct: 61 FDIESIHTTTISSTLGVNYFVKFGTEPKPIPLSLIHQLM----------------NRSEC 104 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 + E I T PD + R L + LI + I S + K Sbjct: 105 SSQRNEEIDEIATIPDKKLRCALFIKLITQ-IPDSFEQNSLIK 146 >UniRef50_A6EBM5 Putative uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EBM5_9SPHI Length = 170 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 64/164 (39%), Gaps = 5/164 (3%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 ++ WY + + ++A L R+ + P+ K ++ V EPL +YLFV Sbjct: 8 IKKWYPVCTQSRAEKKAYSELTRKNITSYLPLQRQMKQWSDRKKWVEEPLIRSYLFVHIS 67 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKP---KDIVDPATPYPGDKVI 117 + + T G++ F+ F A +P I QL + + + G+K+ Sbjct: 68 RQQQ--AEVLMTSGIARFIYFSGHIASMPEQQIEQLKLLTASPYELEITENNLLEGEKIT 125 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 I G +G + + ++ + +N I + + + Sbjct: 126 IKAGPLQGMSGEVVAYRSQKKLLVRMTELNHAILVHIPASLIGR 169 >UniRef50_A3EVT3 Transcription antitermination protein nusG n=4 Tax=Bacteria RepID=A3EVT3_9BACT Length = 184 Score = 136 bits (343), Expect = 3e-31, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 77/174 (44%), Gaps = 13/174 (7%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAV---------NCLAPMITLEKIVRGKRTAVSEPLFP 52 ++WY+++ G R + +E + V + P+ + ++ GK+ S +FP Sbjct: 11 KNWYVIHTYAGFENRVKTSIEERVVLKDLADIVGQVVVPIQNVTELKEGKKKVSSRKVFP 70 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT--- 109 Y+ VE +P I AT V+ F+ G +P + S + +L P+ Sbjct: 71 GYVLVEMEPTEEAIQFILATPKVTGFLGNGTTPIPMSSREVSELFDRIESGTAMPSPSQH 130 Query: 110 PYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162 + V IT+G F+GF + +E D + + +L+++ ++ + + +L Sbjct: 131 FSESETVRITDGPFQGFSGMISEVDNDHGKLKVLVSIFGRQTPVELDFLQVERL 184 >UniRef50_C4Z2Q9 Transcription antitermination protein nusG n=20 Tax=Bacteria RepID=C4Z2Q9_EUBE2 Length = 178 Score = 136 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 37/172 (21%), Positives = 75/172 (43%), Gaps = 14/172 (8%) Query: 3 SWYLLYCKRGQLQRAQEHLER---------QAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G + + ++E+ Q + + P+ T+ +I G + A + +FP Sbjct: 5 KWYVVHTYSGYENKVKANIEKTVENRNLHDQILEVIVPLETVVEIKDGSKKAAQKKMFPG 64 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSV-YKPKDIVDPATPYP 112 Y+ V+ + TRGV+ FV G+ P + I L + + + V P + Sbjct: 65 YVLVKMVMNDDSWYVVRNTRGVTGFVGPGSKPVPLTPTEIKNLGISLEEEQEVKPVIQFA 124 Query: 113 ---GDKVIITEGAFEGFQAIFTEPDGEARSM-LLLNLINKEIKHSVKNTEFR 160 GDKV+I GA+E T + + + + + + +E + T+ + Sbjct: 125 GKVGDKVMILSGAWEDTVGEITNINEGKQCLTINVEMFGRETPVEIDFTDVK 176 >UniRef50_D0WPF7 Transcription antitermination protein nusG n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WPF7_9ACTO Length = 274 Score = 136 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 44/184 (23%), Positives = 71/184 (38%), Gaps = 26/184 (14%) Query: 4 WYLLYCKRGQLQRAQEHLE---------RQAVNCLAPMITLEKIVRGKRTAVSEPLFPNY 54 WY+L+ G +R ++ LE PM + +I RG+R VS P Y Sbjct: 89 WYVLHTYSGYEKRVKQDLEVRMHSMNMEDYIFQIEVPMEEVFEIRRGQRKLVSRVRMPGY 148 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPS--------AVIHQLSVYKPKDIVD 106 + + D + +T GV+ FV G +P + VI + + Sbjct: 149 VLIRMDLTDDSWRVVQSTNGVTGFVGNGRTPVALSENEVVSMLTPVIEAEAAAEAVAAGK 208 Query: 107 PATPYP--------GDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNT 157 A+P P GD V +T + G A +E D R +L+ L+ +E + Sbjct: 209 AASPTPATLSPYAVGDAVTLTSEPWAGMPATVSEVDAANQRLTVLMTLVGQETPVELSFN 268 Query: 158 EFRK 161 + RK Sbjct: 269 QVRK 272 >UniRef50_D2QI92 NusG antitermination factor n=2 Tax=Spirosoma linguale DSM 74 RepID=D2QI92_9SPHI Length = 161 Score = 135 bits (340), Expect = 6e-31, Method: Composition-based stats. Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 6/161 (3%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY+L K + + + L + + P+I ++ + V EPLFP Y FV + Sbjct: 3 WYVLCTKPRKEKFLAKLLAEKQIEVYCPLIRRKRRWSDRIKTVEEPLFPCYCFVNV--KE 60 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK---DIVDPATPYPGDKVIITE 120 + T G+ ++ + PAIV I + + + D++ + P DKV+I Sbjct: 61 SERADVFVTPGIVRYLYWLGKPAIVKDKEIDLIKLTLNQFDHDLIHLESFNPKDKVVINS 120 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 G+F G G + ++ L+ + I+ T K Sbjct: 121 GSFMGQGGTVVNQQG-IKVLIHLDSLQLCIRVDTSKTLIAK 160 >UniRef50_B9XAW5 NusG antitermination factor n=1 Tax=bacterium Ellin514 RepID=B9XAW5_9BACT Length = 205 Score = 134 bits (339), Expect = 7e-31, Method: Composition-based stats. Identities = 45/161 (27%), Positives = 70/161 (43%), Gaps = 5/161 (3%) Query: 3 SWYLLYCKRGQLQRAQEHLER-QAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 +WY + K A +L + Q V P + K R ++E LFPNY+F F Sbjct: 33 AWYCVRSKPKHEHIAAANLSKLQVVETFNPSLRSRKATRRGPVWMTESLFPNYIFARFPF 92 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYP--GDKVIIT 119 E + + TRGVS V FG VP+ VI +L P + + ++ P GD+V IT Sbjct: 93 EQM-FDEVKYTRGVSSLVHFGTGYPEVPADVIEELRRNFPANELKLSSEVPTAGDQVTIT 151 Query: 120 EGAFEGFQAIFT-EPDGEARSMLLLNLINKEIKHSVKNTEF 159 A G Q + + R +LL+++ + + Sbjct: 152 SRALFGLQGVVLRTMPAQRRVQVLLDMLGQTSAVELNLNSV 192 >UniRef50_B4S8Z4 NusG antitermination factor n=4 Tax=Chlorobiaceae RepID=B4S8Z4_PROA2 Length = 172 Score = 134 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 31/155 (20%), Positives = 67/155 (43%), Gaps = 4/155 (2%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY +Y + ++ L+ + + P++ + ++ VS PLF Y+FV Sbjct: 9 WYAVYVRSRFEKKVHLLLQEKGIVSFLPLVDTWRQWSDRKKKVSMPLFRGYVFVRIHYRQ 68 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK-DIVDPATPY--PGDKVIITE 120 H + T GV F+ G + +++ I + + + D+ P PG +V + Sbjct: 69 DHPF-VLDTDGVVKFIGIGRAASVIRDRDIEWIKILTGEPDVRKEVLPLLPPGKQVKVIA 127 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVK 155 G F G + + + E++ ++ I + I+ ++ Sbjct: 128 GPFVGLEGVVRKDGRESKLVVYFESIMQGIEVTIN 162 >UniRef50_Q6A6K1 Transcription antitermination protein nusG n=3 Tax=Propionibacterium acnes RepID=Q6A6K1_PROAC Length = 303 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 69/187 (36%), Gaps = 27/187 (14%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+L+ G + +++L+ + + P + +I G R ++ P Sbjct: 117 EWYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPG 176 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVP-SAVIHQL---------------- 96 Y+ V D + T V+ FV +P + V+ L Sbjct: 177 YVLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVVARVSRENADKT 236 Query: 97 SVYKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVK 155 S K K V+ A G+ V IT+G F G A TE + R L+ ++ + ++ Sbjct: 237 SSPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLE 296 Query: 156 NTEFRKL 162 + K+ Sbjct: 297 FNQIEKI 303 >UniRef50_D2RNN9 NusG antitermination factor n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RNN9_ACIFE Length = 191 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 34/186 (18%), Positives = 64/186 (34%), Gaps = 25/186 (13%) Query: 2 QSWYLLYCKRGQLQRAQEHLE---------RQAVNCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY+++ G + + +LE Q L PM K+ V+ +FP Sbjct: 5 KHWYVIHTYSGYENKVKMNLESKIHSLGMEEQIFQVLVPMQNEVDAKDDKQKVVARKVFP 64 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYP 112 Y+ +E + + T GV+ FV G P + + ++ +PK+ Sbjct: 65 GYVLIEMIVDDRTWYAVRNTPGVTGFVGTGTKPIPLSDREVERILGAQPKEGDKAEAAGK 124 Query: 113 ---------------GDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKN 156 D V I F E + E + +++ + +E VK Sbjct: 125 AVEEPVVRMECPVGLNDTVRIKAPGFTDMVGTVAEINDEQQKIKVMVEMFGRETPIEVKF 184 Query: 157 TEFRKL 162 T+ + Sbjct: 185 TQVEAI 190 >UniRef50_D1BP79 Transcription antitermination protein nusG n=5 Tax=Veillonellaceae RepID=D1BP79_VEIPT Length = 178 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 69/172 (40%), Gaps = 12/172 (6%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQ----AVN-----CLAPMITLEKIVRGKRTAVSEPLFP 52 + WY+++ G + + LE + + L P+ G + V +FP Sbjct: 5 KKWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRKIFP 64 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDP--ATP 110 Y+ VE + + T GV+ FV P + + + + + D Sbjct: 65 GYVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLSDSEVEHILKSQGLDKKPTINVDV 124 Query: 111 YPGDKVIITEGAFEGFQAIFTEPDGEARSMLL-LNLINKEIKHSVKNTEFRK 161 G+ V IT GAFE + TE + E ++ L + + N++ + ++ ++ K Sbjct: 125 EVGETVRITSGAFEDKLGVITELNPEKGTLKLSVEMFNRDTEVELEFSQVEK 176 >UniRef50_B8E0K4 Transcription antitermination protein nusG n=2 Tax=Dictyoglomus RepID=B8E0K4_DICTD Length = 176 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 71/170 (41%), Gaps = 11/170 (6%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPN 53 W++++ G + + LERQ + P + + GK+ + +FP Sbjct: 5 KWFVVHTLAGHEHKVKAILERQVKLNHLEDKVFEIVVPEEKVMTVKGGKKRIQVKKVFPG 64 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVY-KPKDIVDPATPYP 112 YLF+ + I T GV+ FV P+ + H + + + K+I Sbjct: 65 YLFIRMIEDEDVIRMIRNTTGVTGFVGTPGRPSTLNPQEEHWIRRFLEQKEIRPELKVKK 124 Query: 113 GDKVIITEGAFEGFQAIFTEPDGEARSM-LLLNLINKEIKHSVKNTEFRK 161 GD+V I G F G++ E E ++ +LL++ +E + +T+ K Sbjct: 125 GDRVYIKSGPFMGYEGFVDEVYPEKGTVRVLLSIFGRETPTEIDHTQVEK 174 >UniRef50_Q01XJ6 NusG antitermination factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01XJ6_SOLUE Length = 179 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 4/161 (2%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 W+ + + +++ + L + AP + + + +PLFP Y+F F P Sbjct: 20 WFAVKVRSNFEKKSADILREKGYQEFAPSYPSRRYWSDRVKVIDQPLFPGYVFCRFHPN- 78 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY--PGDKVIITEG 121 H + T GV V FG A V + L + + G KV+I G Sbjct: 79 -HFLPVLQTAGVVQIVGFGGKLAPVDEVELASLRTLMNSSLPISQREFLHVGRKVLIRRG 137 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G + I E R ++ ++L+ + + + + Sbjct: 138 PLAGVEGILEEIRKGYRIVVSISLLQRSVTAEIDANWVTTV 178 >UniRef50_A5FN19 Transcription antitermination protein nusG n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FN19_FLAJ1 Length = 154 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 33/147 (22%), Positives = 65/147 (44%), Gaps = 5/147 (3%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 +WY++Y K ++ E L + + C P+IT K ++ V PLF +Y+F++ + Sbjct: 1 MNWYVVYTKPKWEKKVAEKLTQIGIECYCPLITQVKQWSDRKKKVEMPLFNSYVFIQIED 60 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDI---VDPATPYPGDKVII 118 + ++ G+ ++ + PA+V I+ + + + GDK+ + Sbjct: 61 ADRN--SVFEVAGIVRYLFWLGKPAVVRDEEINVIKNSLKASNIADISVSQIQVGDKIKL 118 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNL 145 GAF AI E ++L +L Sbjct: 119 ETGAFSNQNAIVQEVSKTHYILVLESL 145 >UniRef50_C7PT75 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PT75_CHIPD Length = 174 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 8/162 (4%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD-- 60 WYLLY + Q R + + + + P T+ + + + PLFP+Y+FV Sbjct: 7 GWYLLYTRPRQEARVAKEMADKNIQIYLPYTTVTRRWTDRIKVLEVPLFPSYVFVHLTNM 66 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVY---KPKDIVDPATPYPGDKVI 117 E + + + + +VRFG A V A + + V PG +++ Sbjct: 67 HEFYYGSNLES---ACSYVRFGNEVARVSDAAVDAVRTIAKAGNNLEVSSERFTPGQQMM 123 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 I EG G + G+ + ++ ++++ + I + + Sbjct: 124 IKEGPLCGLNCEVIQYKGKDKILVRVHMLQRSIMADMPASVL 165 >UniRef50_Q5HRL6 Transcription antitermination protein nusG n=212 Tax=Bacilli RepID=NUSG_STAEQ Length = 182 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 67/175 (38%), Gaps = 14/175 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLER---------QAVNCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY ++ G + +++LE+ Q + P ++ GK + + FP Sbjct: 8 KRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVKKTFP 67 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRF---GASPAI-VPSAVIHQLSVYKPKDIVDPA 108 Y+ VE + T GV+ FV G+ P +P V L K+ Sbjct: 68 GYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQMGLKEKTIDV 127 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRKL 162 G++V I G F E + + + +L+++ +E V+ + KL Sbjct: 128 ELDVGEQVRIQSGPFANQIGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182 >UniRef50_Q9KGE7 Transcription antitermination protein nusG n=16 Tax=Bacteria RepID=NUSG_BACHD Length = 178 Score = 133 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 70/176 (39%), Gaps = 15/176 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFP 52 ++WY+++ G + + +LE++ + P+ ++ GK VS +FP Sbjct: 3 KNWYVVHTYSGYENKVKTNLEKRVESMDMTDKIFRVMVPVEEETEVKNGKSKQVSRKVFP 62 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRF---GASPAIVPSAVIHQL--SVYKPKDIVDP 107 Y+ VE + T GV+ FV G+ P + + + + ++ Sbjct: 63 GYVLVEMVMTDDSWYVVRNTPGVTGFVGSAGAGSKPTPLLPEEVDAILRQMGMQEERQVE 122 Query: 108 ATPYPGDKVIITEGAFEGFQAIFTEPDGEARSM-LLLNLINKEIKHSVKNTEFRKL 162 + V + EG F F E + R + + +N+ +E ++ T+ K+ Sbjct: 123 IDFQLKESVKVKEGPFANFIGTIEEIQLDKRKLKVHVNMFGRETPVELEFTQIEKI 178 >UniRef50_P35872 Transcription antitermination protein nusG n=13 Tax=Bacteria RepID=NUSG_THET8 Length = 184 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 70/180 (38%), Gaps = 21/180 (11%) Query: 3 SWYLLYCKRGQLQRAQEHLER---------QAVNCLAPMITLEKIVRG-KRTAVSEPLFP 52 WY ++ GQ ++A+ +LE+ + L P + ++ G K+ V + LFP Sbjct: 4 EWYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKKLFP 63 Query: 53 NYLFVEFDPEVIH-----TTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDP 107 YLF++ D + T G++ FV G P + + + Sbjct: 64 GYLFIQMDLGDEEEPNEAWEVVRGTPGITGFVGAGMRPVPLSPDEVRHILEVSGLLGKKE 123 Query: 108 A-----TPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 A GD+V + G F F TE + E + +++ + +E + ++ K Sbjct: 124 APKAQVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK 183 >UniRef50_C9LQP9 Transcription antitermination protein nusG n=1 Tax=Dialister invisus DSM 15470 RepID=C9LQP9_9FIRM Length = 206 Score = 132 bits (332), Expect = 4e-30, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 65/161 (40%), Gaps = 10/161 (6%) Query: 4 WYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPNY 54 WY+++ G + ++ L R+ + L PM E++ G++ VS +FP Y Sbjct: 36 WYVIHTYSGYENKVKDTLTRKVHSMGMDDTIIQILLPMHDEEEVKDGEKKVVSRKVFPGY 95 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGD 114 L ++ + + T GV+ FV P + ++ K K GD Sbjct: 96 LLIQMEVNDRSWYVVRNTPGVTGFVGTTTKPIPLSDEEAKRIIEGKDKKQTAKTDAKVGD 155 Query: 115 KVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVK 155 + IT G F A+ + + RS + ++ N +++ Sbjct: 156 TIKITRGPFADRSAVVLDVS-DDRSKIKADISNFGTTTTIE 195 >UniRef50_Q01SW9 Transcription antitermination protein nusG n=75 Tax=cellular organisms RepID=Q01SW9_SOLUE Length = 239 Score = 131 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 67/174 (38%), Gaps = 13/174 (7%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQ----AV-----NCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY+++ G + QE L + L P + ++ GK+ ++P Sbjct: 66 KKWYIIHTYSGFENKVQESLRTRADAFGFADKIGQILIPTEEVVELRNGKKVTSKRLVYP 125 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDP---AT 109 Y+ VE + + T V+ FV G SP + + ++ + + P T Sbjct: 126 GYVLVEMEMNDALWHEVKNTPRVTGFVGGGNSPVPLSADEVNSILYRQASSAERPRPKMT 185 Query: 110 PYPGDKVIITEGAFEGFQAIFTEPDGEARSM-LLLNLINKEIKHSVKNTEFRKL 162 D V I +G F F E + E ++ +++ + + ++ + K+ Sbjct: 186 FEKNDSVRIIDGPFANFSGKVDEVNPERGTLRVMVTIFGRATPVELEFLQVEKV 239 >UniRef50_A6LPP9 Transcription antitermination protein nusG n=27 Tax=Clostridiales RepID=A6LPP9_CLOB8 Length = 181 Score = 131 bits (329), Expect = 1e-29, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 65/169 (38%), Gaps = 13/169 (7%) Query: 4 WYLLYCKRGQLQRAQEHLER----QAVNCL-----APMITLEKIVRGKRTAVSEPLFPNY 54 WY+++ G + + +LE+ + + L PM + + GK+ + FP Y Sbjct: 15 WYVVHTYSGYENKVKANLEKAIENRNLEALIHDIQVPMEEVVEEKDGKQKVSLKKKFPGY 74 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGD 114 + V+ + TRGV+ FV G+ P + + + V + +D G+ Sbjct: 75 VLVKMLMGDEAWYVVRNTRGVTGFVGPGSKPVPLSDEEVESMGVLEVPVEIDLEV---GE 131 Query: 115 KVIITEGAFEGFQAIFTEPDGEAR-SMLLLNLINKEIKHSVKNTEFRKL 162 + I G A E + R L+ + +E + + KL Sbjct: 132 SIRIISGPLRDSVATIQEIIPDKRKVKALVEMFGRETLAELDFNQVEKL 180 >UniRef50_Q1WST1 Transcription antitermination protein nusG n=55 Tax=Firmicutes RepID=Q1WST1_LACS1 Length = 186 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 15/176 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSE-PLF 51 + WY+L+ G + +E+LE +A + P + + + V + F Sbjct: 10 KKWYVLHTYAGYENKVKENLESRATSMGMEDYIFRVVVPEEEKHETTKTGKEKVEKLKTF 69 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFV---RFGASPAIVPSAVIHQLSVYKPKDIVDPA 108 P Y+ VE + T GV+ FV G+ PA + I+ + Sbjct: 70 PGYVLVEMVMTDQSWYVVRNTPGVTGFVGSHGSGSKPAPLLDEEINHILHELGISSRHSN 129 Query: 109 -TPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRKL 162 GD V I +GAF G TE D E + + +++ +E + + KL Sbjct: 130 FDAEVGDAVTIIDGAFSGLVGKITEIDTEKMKLKVDIDMFGRETAAELNYDQVDKL 185 >UniRef50_B4D2H1 Transcription antitermination protein nusG n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2H1_9BACT Length = 186 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 65/163 (39%), Gaps = 5/163 (3%) Query: 3 SWYLLYCKRGQLQRAQEHLER-QAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 WY L + A L + + + P + +++ R +E LFPNYLF F+ Sbjct: 19 KWYCLRAQPKHEHIAAARLRQCEEIQVFCPRVRIQRSTRRGLVWFTEALFPNYLFARFEW 78 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY--PGDKVIIT 119 H + + +GVS VRFG VP+ + L Y + + GD V I Sbjct: 79 VQSH-ALVRSCQGVSGIVRFGDHVPEVPAGTLDDLRAYMEDAELKTVSFNIDEGDDVEIV 137 Query: 120 EGAFEGFQAIFTEPDG-EARSMLLLNLINKEIKHSVKNTEFRK 161 EG F G + + R +LL ++ + + T K Sbjct: 138 EGPFRGQNGVVKQLLPARERVKVLLEVLGGATEVDLCLTSVFK 180 >UniRef50_A3XR75 NusG antitermination factor n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XR75_9FLAO Length = 158 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 35/149 (23%), Positives = 63/149 (42%), Gaps = 6/149 (4%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 +WY+LY K ++ LE+ V P + ++ ++ + PLF +Y+FV Sbjct: 1 MNWYVLYVKPQSEKKVASALEKLGVKVFCPTLEEVRVWSDRKKKIQVPLFKSYVFVCL-- 58 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA---TPYPGDKVII 118 + A GV ++ + PA+V I + + + V T PG +V I Sbjct: 59 PNTERQQVFAVPGVVRYLFWLGKPAVVRDEEIAAIQDWLSDEAVADVQVRTYTPGTEVKI 118 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLIN 147 G F+G + I E G R +++ + Sbjct: 119 AAGHFKGQKGIVQEV-GRKRLKMVIKSLG 146 >UniRef50_A3J1W0 Putative transcriptional regulator n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J1W0_9FLAO Length = 154 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 62/148 (41%), Gaps = 6/148 (4%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 +WY LY K Q+ + L+ + P++ K ++ V PL P+Y+FV+ Sbjct: 1 MNWYALYTKPRNEQKVAQKLQALGIIAYCPLVLSSKQWSDRKKKVLVPLLPSYVFVQI-- 58 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIV----DPATPYPGDKVI 117 E + + GV +V + PAI+ I L I + T + + Sbjct: 59 EEQNRKDVFQVGGVVQYVFWLGKPAIIKPNEIEALKQQLDSSIPVVHFEMTTWRSNETIQ 118 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNL 145 ITEG F+G AI + +LL +L Sbjct: 119 ITEGVFKGQDAIVDKISTNKVRLLLKSL 146 >UniRef50_D2LJZ0 NusG antitermination factor n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJZ0_RHOVA Length = 169 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 49/161 (30%), Positives = 69/161 (42%), Gaps = 6/161 (3%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVS--EPLFPNYLFVEFD 60 W +L + A E+L RQ PM K VR R A PLFP Y+FVE Sbjct: 8 KWVVLTTHPHRENFAVENLARQDFTAYCPM--TVKHVRHARRAYDAPRPLFPGYVFVEHQ 65 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD--PATPYPGDKVII 118 + I T GV +R G SPA++P I L + ++ A G V I Sbjct: 66 SAFQYLRPILGTYGVRSILRIGDSPAVLPVGFIESLKAREMDGVISKPEAPLKAGQTVTI 125 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 + G F+G E R +LLL+L+N++ + V+ Sbjct: 126 SGGPFDGLVGQILEFRERDRVLLLLDLLNQQTRVQVEAKML 166 >UniRef50_Q1RHC5 Transcription antitermination protein nusG n=15 Tax=Rickettsia RepID=NUSG_RICBR Length = 190 Score = 128 bits (323), Expect = 6e-29, Method: Composition-based stats. Identities = 36/171 (21%), Positives = 74/171 (43%), Gaps = 11/171 (6%) Query: 2 QSWYLLYCKRGQLQRAQ----EHLERQAV-----NCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY+++ G R + E + +Q + + L P+ + ++ R K V + L P Sbjct: 18 KKWYVIHTASGAENRIKRIMLERISKQKMSDFFDDILVPVFGVSEVKRSKNVKVEKKLMP 77 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSV-YKPKDIVDPATPY 111 +Y+ ++ + + GV+ F+ +P + + I + + + K+ D Sbjct: 78 SYILIKMNMTDKSWHLVKNIPGVTGFLGSKTTPKALTESEIQNIRLETEAKEAKDAKLYE 137 Query: 112 PGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 G+ V +TEG FE F E D E R + +++ K + T+ +K Sbjct: 138 VGEIVTVTEGPFETFTGTVEEVDQEKARLKVSVSIFGKATPIELSFTQVKK 188 >UniRef50_C9M8Z2 Transcription antitermination protein nusG n=2 Tax=Synergistaceae RepID=C9M8Z2_9BACT Length = 185 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 70/174 (40%), Gaps = 14/174 (8%) Query: 3 SWYLLYCKRGQLQRAQEHLER---------QAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 W+ + G + + +LE+ + L PM + + GK +S LFP+ Sbjct: 12 QWFAVQTYSGYENKVKNNLEQRIASMNAEDKIFRVLVPMEDVVVVKDGKSKQMSRKLFPS 71 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSV----YKPKDIVDPAT 109 Y+ VE + + T GV+ FV GA P + + + V + + Sbjct: 72 YVLVEMIMDDQSWYVVRHTPGVTGFVGAGAHPLPLSDEEVRDVLVKVGELEAETPQIVVE 131 Query: 110 PYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162 GD V + G F G + ++ + + +L++ +E + V +TE ++ Sbjct: 132 CQVGDSVRVKSGPFVGAVGVVSDVNTSTGKVKFVLSVFGRETEAEVNHTELERV 185 >UniRef50_Q0AUG6 Transcription antitermination protein nusG n=33 Tax=Bacteria RepID=Q0AUG6_SYNWW Length = 203 Score = 127 bits (321), Expect = 9e-29, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 63/172 (36%), Gaps = 12/172 (6%) Query: 3 SWYLLYCKRGQLQRAQ---------EHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G + + +++ + + P + GKR ++ +FP Sbjct: 32 DWYVVHTYSGYENKIKVDLSKRVESMNMQDKIFEVIIPEEQEVEYKNGKRKVTNKRIFPG 91 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDP--ATPY 111 Y+ V + + T GV+ FV G+ P + I ++ Sbjct: 92 YVIVNMIMDDDSWYVVRHTPGVTGFVGSGSKPIPLHQEEIDKIRRQMGLMEKKTMIIDIE 151 Query: 112 PGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRKL 162 G+ + + G F F+ + E E + + +++ +E + + K+ Sbjct: 152 IGESIRVKTGPFANFEGVVRELLPEKGKIRVNISMFGRETPVELDYEQIEKI 203 >UniRef50_A6E8J5 Transcription antiterminator n=1 Tax=Pedobacter sp. BAL39 RepID=A6E8J5_9SPHI Length = 173 Score = 127 bits (321), Expect = 1e-28, Method: Composition-based stats. Identities = 33/149 (22%), Positives = 64/149 (42%), Gaps = 6/149 (4%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 +Q W+ +Y + ++ ++ L+ Q + C P+ ++ + V PLF +Y+FV Sbjct: 11 VQKWFAVYTRPRWEKKVEQQLKMQGITCYCPLRKVQSQWADRIKVVELPLFSSYVFVCIH 70 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSV----YKPKDIVDPATPYPGDKV 116 P + GV +FV + A + +VI ++ Y +IV GD+V Sbjct: 71 PREE--LNVRLNIGVVNFVYYMGHLAEIRHSVIEEIKSNLEKYPDAEIVSMRDLEVGDRV 128 Query: 117 IITEGAFEGFQAIFTEPDGEARSMLLLNL 145 I G + + G+ +++ NL Sbjct: 129 RIKAGLMGEQEGKVLQVRGKNVLLVIDNL 157 >UniRef50_D1B6U2 Transcription antitermination protein nusG n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6U2_THEAS Length = 181 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 65/175 (37%), Gaps = 14/175 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY++ G + + +LE++ N L P+ + G+ V +FP Sbjct: 6 RRWYIVQTYSGYENKVKANLEQRIATMGMEDRIFNVLVPVEEKVFVKEGRAKRVRRKVFP 65 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQ----LSVYKPKDIVDPA 108 +Y+ VE + + T GV+ FV G P + + + + + + Sbjct: 66 SYVLVEMIMDDQSWYVVRHTPGVTGFVGSGNHPIPLTDREVAEVMGKIGLPADRKPKVEL 125 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRKL 162 GD V + G FEG E D + R + + +E + + K+ Sbjct: 126 DIEVGDTVRVKSGPFEGCVGPVVEVDPDKGRVRFSVTVFGRETVAEAGHEDLEKV 180 >UniRef50_Q2LQ92 Transcription antitermination protein nusG n=4 Tax=Proteobacteria RepID=Q2LQ92_SYNAS Length = 176 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 66/170 (38%), Gaps = 13/170 (7%) Query: 3 SWYLLYCKRGQLQRAQEHLERQ----AVN-----CLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G + ++ L+ + + L P + ++V G++ FP Sbjct: 4 KWYVVHTYSGFESKVKQSLQERIEAAGMQARFSDILIPEEDVVELVSGEKKTSKRKFFPG 63 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYP- 112 Y+ V+ + + + T V+ F+ P+ +P + L + + P + Sbjct: 64 YILVKMELDDDTWHLVKDTPKVTGFIGSREKPSPIPDKDVELLKTRIDEGTLKPKPKFKF 123 Query: 113 --GDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEF 159 GD V I +G F F + E E + +++++ + + + Sbjct: 124 EVGDHVTIIDGPFTNFDGVIDEVKAEKGKLRVIVSIFGRPTPVELDFIQV 173 >UniRef50_B1I1L1 Transcription antitermination protein nusG n=3 Tax=Firmicutes RepID=B1I1L1_DESAP Length = 178 Score = 127 bits (319), Expect = 2e-28, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 74/175 (42%), Gaps = 14/175 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLER---------QAVNCLAPMITLEKIVRGKRTAVSEPLFP 52 + W++++ G + + +LE+ + + P+ ++ GKR +FP Sbjct: 3 KQWFVVHTYSGYENKVKANLEKRIESMSMEDKIFRIVVPVEDEIEVKGGKRKISKRKIFP 62 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRF---GASPAIVPSAVIHQ-LSVYKPKDIVDPA 108 Y+ VE + + T GV+ FV G+ P + A +Q +S + + Sbjct: 63 GYVMVEMILDDDSYRVVRNTPGVTGFVGSVGIGSKPIPLTDAEANQIISQMEGDEPRIRI 122 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRKL 162 PG+KV + G FE F + + E + +++++ +E ++ + K+ Sbjct: 123 DLVPGEKVRVMAGPFENFIGTVDDVNYEKAKIRVMISMFGRETPIELEYFQIEKV 177 >UniRef50_Q9CDV7 Transcription antitermination protein nusG n=52 Tax=Lactobacillales RepID=NUSG_LACLA Length = 185 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 40/174 (22%), Positives = 71/174 (40%), Gaps = 14/174 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFP 52 Q W+++ G ++ +E L +A + P T+ V GK V E LFP Sbjct: 11 QGWFVIQTYAGYERKVKEDLLERAELYNMADKILRVEIPTETIRTEVNGKMKEVEENLFP 70 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGA---SPAIVPSAVIHQLSVYKPKDIVDPA- 108 Y+ VE + + T V+ FV P + I + V K + + Sbjct: 71 GYVLVEMNMTDEAWFIVRNTPNVTGFVGSHGNRSKPTPLFEQEIQDILVGMGKVVREIDF 130 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 + G +V I +GAF GF+A TE +G+ + L +++ + + + + Sbjct: 131 DVFVGKRVRIVDGAFSGFEAPITEINGD-KLTLTVDMFGRATPVELDMHQIEDI 183 >UniRef50_A6DRM3 Putative transcriptional activator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DRM3_9BACT Length = 169 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 42/160 (26%), Positives = 73/160 (45%), Gaps = 9/160 (5%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 WY LY K Q + P I + K+ RGK T V LFP+Y+F++ + Sbjct: 5 DWYCLYTKPRQENLTAQSALDAGFPTFNPKIEVRKVRRGKATYVHAALFPSYVFIQANEG 64 Query: 63 VIHTTTINATRGVSHFVRFG--ASPAIVPSAVIHQLSVYKPKDIV--DPATPYPGDKVII 118 + RGV+ + FG +P+ ++ LS + ++ D GDKV + Sbjct: 65 NLDKA--RYLRGVNRIIGFGRDGESLKIPAVILETLSTFLEDNVYKHDMHELKDGDKVQV 122 Query: 119 TEGAFEGFQAIFTE-PDGEARSMLLLNLIN--KEIKHSVK 155 +G +G +AIF + R+++L L + +E K +++ Sbjct: 123 LDGPLKGVEAIFKKGLKDGERAVVLFELFSNYQEAKVNIE 162 >UniRef50_A0LIY4 NusG antitermination factor n=2 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LIY4_SYNFM Length = 212 Score = 126 bits (316), Expect = 4e-28, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 63/162 (38%), Gaps = 3/162 (1%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 +SW+ LY + + L++++++C P++ +R ++ PLFP Y+FV Sbjct: 39 KSWFALYVQVKHEKEVVRRLDQKSIDCFLPLMECWSKRLDRRKRITLPLFPGYVFVHTVL 98 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLS--VYKPKDIVDPATPYPGDKVIIT 119 + I T G ++ P +P I L + K + G+ V + Sbjct: 99 DNYTNVNILKTPGALSILKNSEGPLPIPVYQIENLQTILNSSKSLDLHPYLKEGEWVRVI 158 Query: 120 EGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFR 160 G G I + R ++ ++ I + + + + Sbjct: 159 RGPLSGCVGILKRHAPKKGRLVVSVDCIRQSVSVELDVEDVE 200 >UniRef50_B4R8J9 Transcription antitermination protein nusG n=157 Tax=Proteobacteria RepID=B4R8J9_PHEZH Length = 189 Score = 125 bits (314), Expect = 6e-28, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 67/173 (38%), Gaps = 13/173 (7%) Query: 3 SWYLLYCKRGQLQRAQEHLERQ--------AV-NCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ ++ E + Q L P + +I RG++ FP Sbjct: 16 KWYIVHAYSNFEKKVAESIREQARTQGLEENFSEILVPTEDVVEIRRGRKVNSERKFFPG 75 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA---TP 110 Y+ V+ + I T V+ F+ G+ P V + ++ + + P T Sbjct: 76 YVLVKMEMTDEAYHLIKNTPKVTGFLGSGSKPIPVSEKEVERIVGAIEEGVERPKPTITF 135 Query: 111 YPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRKL 162 G++V +T+G F F + D E R + +++ + ++ + K+ Sbjct: 136 EIGEQVRVTDGPFASFNGSVEQVDEERARLRVTVSIFGRATPVELEYGQVEKI 188 >UniRef50_C8XBG0 Transcription antitermination protein nusG n=4 Tax=Bacteria RepID=C8XBG0_NAKMY Length = 306 Score = 125 bits (314), Expect = 6e-28, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 70/184 (38%), Gaps = 24/184 (13%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G + + +LE + P + +I G+R V ++P Sbjct: 123 EWYVVHSYAGYENKVKTNLETRIKSLDMEDYIFQIEVPTEEVTEIKNGQRKQVQRKVYPG 182 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVR-FGASPAIVP-SAVIHQLSVYKPKDIVDPAT-- 109 Y+ V D + + T GV+ FV P+ + V+ L+ P+ AT Sbjct: 183 YILVRMDLTDQSWSAVRNTPGVTGFVGATAQKPSALTIDEVVKILTPTAPRKPASVATTP 242 Query: 110 ----------PYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTE 158 G+ V + +G F A E + + + +L+++ +E + ++ Sbjct: 243 GSAPVRTEVDFSIGESVTVMDGPFATLPATINEVNADAQKLKVLVSIFGRETPVELSFSQ 302 Query: 159 FRKL 162 K+ Sbjct: 303 VAKI 306 >UniRef50_Q1AU17 Transcription antitermination protein nusG n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AU17_RUBXD Length = 176 Score = 123 bits (310), Expect = 1e-27, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 67/176 (38%), Gaps = 14/176 (7%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQ----AVNCL-----APMITLEKIVRGKRTAVSEPLF 51 M+ WY++ G + + LER+ + P + +I GK+ + F Sbjct: 1 MKKWYVVNTYSGHENKVRATLERRIESLGLQRYFGEIRIPTEQVIEIKNGKKVPTTHRQF 60 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY 111 P Y+ V + I T GV+ V G P + A + +L + + + Sbjct: 61 PGYILVNVEMNDDTWRVIRQTPGVTQIVGSGDKPTPLSRAEVERLLHPEEPEKREKVKAT 120 Query: 112 P----GDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRKL 162 G+ V + G F ++ + +++ +L+++ +E + + KL Sbjct: 121 VDFDIGETVRVVAGPLSDFTGTISDINVDQSKVKVLVSIFGRETPVELSFNQVAKL 176 >UniRef50_C7PGB9 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PGB9_CHIPD Length = 185 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 66/159 (41%), Gaps = 6/159 (3%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY +Y K ++ + L R+ + P+ + ++ V EPLF +Y+FV + Sbjct: 8 WYAVYTKPRWEKKVADALVRKQIETYCPINRVTHQWSDRKKIVEEPLFKSYVFVRIPEDK 67 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLS--VYKPKDIVDPATP-YPGDKVIITE 120 T + T G+ +FV + PA +P + + + + +D+ P D + IT Sbjct: 68 --KTLVRETSGIVNFVYWLGKPASIPDHEVELIKRFLREYQDVQVERFPIQEDDLIRITA 125 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 G E G+ +L + + +VK ++ Sbjct: 126 GPLMHQHGRVVEA-GKNTVKAVLYSMGFSLIATVKTSDL 163 >UniRef50_C8WBL1 Transcription antitermination protein nusG n=7 Tax=Sphingomonadales RepID=C8WBL1_ZYMMN Length = 179 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 34/177 (19%), Positives = 66/177 (37%), Gaps = 16/177 (9%) Query: 1 MQSWYLLYCKRGQLQRAQEHL----ERQAVN-----CLAPMITLEKIVRGKRTAVSEPLF 51 M WY+++ G + +E + ER + P ++ RGK+ AV F Sbjct: 1 MSRWYIIHAYSGFENKVKEAVAAEAERLGLQPLVEAIEVPTEQAVEVRRGKKVAVERKCF 60 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKP------KDIV 105 P Y+ + + + T V+ F+ F P + A + +K K Sbjct: 61 PGYVLAKLNMNEDVYHLVKNTPKVTGFLGFSGKPQPISDAEAEHILNHKAEAEVAGKKAQ 120 Query: 106 DPATPYPGDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRK 161 GD+V + EG F F + + D AR + +++ + ++ + + Sbjct: 121 IKVDFEIGDQVKVLEGPFASFNGVVEDLDFDRARVKVSVSIFGRATPVELEFEQVER 177 >UniRef50_D1NBR2 Transcription antitermination protein nusG n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NBR2_9BACT Length = 193 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 68/178 (38%), Gaps = 19/178 (10%) Query: 3 SWYLLYCKRGQLQRAQEHLERQ--------AVNCLAPMITLEKIVRGKRTAVSEPLFPNY 54 W++++ G + ++ + RQ P + ++ +GK+T + LFP Y Sbjct: 14 QWFVIHTLSGHENKVRDKILRQLQTGDQVPVYEAFIPTEKVAEVRQGKKTTTTRKLFPGY 73 Query: 55 LFVEFDP-------EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD- 106 ++V D I + +GV F+ P + + + + + Sbjct: 74 IWVRMDLYDDLGMINEKAWYFIRSVQGVLGFLGGDNKPTALTESEVEDIMRPAQAGAPEV 133 Query: 107 --PATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 G+ V I +GAFE F+ E D E + L++++ + ++ + + Sbjct: 134 KPKIAFEVGEVVRIKDGAFENFEGAIQEIDNERGKLKLMVSIFGRSTPVELEFWQVER 191 >UniRef50_P0AA01 Transcription antitermination protein nusG n=217 Tax=Proteobacteria RepID=NUSG_ECOL6 Length = 181 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 60/175 (34%), Gaps = 16/175 (9%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAV----------NCLAPMITLEKIVRGKRTAVSEPLF 51 + WY++ G R L R+ + + P + +I G+R F Sbjct: 7 KRWYVVQAFSGFEGRVATSL-REHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFF 65 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFV-RFGASPAIVPSAVIHQLSVYKPKDIVDP--- 107 P Y+ V+ + + V F+ PA + + + + P Sbjct: 66 PGYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPK 125 Query: 108 ATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 PG+ V + +G F F + E D E R + +++ + + ++ K Sbjct: 126 TLFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >UniRef50_Q9CK84 Transcription antitermination protein nusG n=81 Tax=Bacteria RepID=NUSG_PASMU Length = 183 Score = 122 bits (308), Expect = 3e-27, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 14/174 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHL---------ERQAVNCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY+L G R L E Q L P + + V GKR FP Sbjct: 8 KRWYVLQAFSGFEGRVATTLREYIKLHQMEDQFGEVLVPTEEVVENVAGKRRKSERKFFP 67 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFV-RFGASPAIVPSAVIHQLSVYKPKDIVDP---A 108 Y+ V+ + + + V F+ PA + ++ + P Sbjct: 68 GYVLVQMEMNDETWHLVRSVPRVMGFIGGTADKPAPISQREADRILNRLQESSEKPRHRK 127 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 PG++V +TEG F F E D E R + +++ + ++ ++ K Sbjct: 128 EFQPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEK 181 >UniRef50_Q9CBK0 Transcription antitermination protein nusG n=4 Tax=Actinomycetales RepID=NUSG_MYCLE Length = 228 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 68/191 (35%), Gaps = 31/191 (16%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G + + +LE + P + +I G+R V+ + P Sbjct: 38 DWYVIHSYAGYENKVKANLETRVQNLDVGDCIFQVEVPTEEVTEIKNGQRRLVNRKVLPG 97 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVP-SAVIHQLSVYKP----------- 101 Y+ V D + T GV+ FV + P+ + V+ L Sbjct: 98 YILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPSGSAKKDAKGAVST 157 Query: 102 ---------KDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIK 151 + + G+ V + +G F A +E + E + +L+++ +E Sbjct: 158 AAAAEAGGLERSIIEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETP 217 Query: 152 HSVKNTEFRKL 162 + ++ K+ Sbjct: 218 VELTFSQVSKI 228 >UniRef50_A9ECY4 Putative uncharacterized protein n=1 Tax=Kordia algicida OT-1 RepID=A9ECY4_9FLAO Length = 188 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 67/163 (41%), Gaps = 5/163 (3%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGK-RTAVSEPLFPNYLFVEFD 60 ++W++LY ++A+ LE + PM +I + + + + LFP+Y+FV+ D Sbjct: 27 RNWFVLYTAPRAEKKAKLELEYRGYEVFLPMTKSLRIWKNRQKKLIDSVLFPSYIFVKTD 86 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLS--VYKPKDIVDPATPYPGDKVII 118 + I ++ ++ G P V I + + ++I G+ V I Sbjct: 87 --ERYLAEICRINKIATYIHCGGKPCKVSPECIEAIKCMLSMDQEISVGNDFIEGESVRI 144 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 EG G+ + + + + + L IN+ + + K Sbjct: 145 VEGPLAGYNGVLVQQKSKTKFGIHLKEINQVASIEICTSALEK 187 >UniRef50_P27309 Transcription antitermination protein nusG n=58 Tax=Bacteria RepID=NUSG_STRVG Length = 299 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 38/188 (20%), Positives = 67/188 (35%), Gaps = 29/188 (15%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAV---------NCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G +R + +LE++AV P + +I G+R V + P Sbjct: 111 EWYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPG 170 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVI-------------------H 94 Y+ V D + T GV+ FV P + I Sbjct: 171 YVLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAQEKAAKAAAEEA 230 Query: 95 QLSVYKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHS 153 L K ++ GD V +T+G F QA E + + + L+ + +E Sbjct: 231 GLPAPAVKRTIEVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVE 290 Query: 154 VKNTEFRK 161 + + +K Sbjct: 291 LSFDQIQK 298 >UniRef50_B8DVU5 Transcription antitermination protein nusG n=21 Tax=Bifidobacteriaceae RepID=B8DVU5_BIFA0 Length = 330 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 33/185 (17%), Positives = 69/185 (37%), Gaps = 25/185 (13%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+L+ G +R + ++E + PM +EK + V+ P Sbjct: 144 KWYVLHTYSGYEKRVKSNIESRVQSFGLEDTIFQVEVPMEEVEKHTEKGKKVVTRVRVPG 203 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVI----------HQLSVYKPKD 103 Y+ + P+ + T GV+ FV PA + + H L K Sbjct: 204 YVLIRMYPDENARRIVRETEGVTGFVGPSREPAPLSRKEVVSMMAPMIASHALKEAGDKP 263 Query: 104 IVD-----PATPYPGDKVIITEGAFEGFQAIFTEPDG-EARSMLLLNLINKEIKHSVKNT 157 + GD+V +T+G F A+ ++ + + +L+++ ++ + Sbjct: 264 AAAKKRTLEVSYKVGDQVTVTDGPFTSMSAVVSDVEPATQKLTVLVSIFGRDTPVELGFD 323 Query: 158 EFRKL 162 + ++L Sbjct: 324 QVQRL 328 >UniRef50_C7RDB1 Transcription antitermination protein nusG n=2 Tax=Anaerococcus RepID=C7RDB1_ANAPD Length = 207 Score = 121 bits (305), Expect = 7e-27, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 66/168 (39%), Gaps = 10/168 (5%) Query: 4 WYLLYCKRGQLQRAQEHLE-----RQA---VNCLAPMITLEKIVRGKRTAVSEPLFPNYL 55 WY+++ G R + ++ Q + P ++ + + LFP Y+ Sbjct: 41 WYVVHTYTGYENRVNDKIQMMIDNEQNPDILEVTVPTEEYVEVKNDTKKVKTRKLFPGYV 100 Query: 56 FVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDK 115 V+ + I T+GV+ FV P + A + + V I++ GD Sbjct: 101 MVKMNITNKSWYIIRNTQGVTGFVGPDGKPVALTPAEVRKFGVKDEAPILNINV-NVGDD 159 Query: 116 VIITEGAFEGFQAIFTEPDGEARSM-LLLNLINKEIKHSVKNTEFRKL 162 V I G FEGF A E D E S+ +++ ++ + T+ + Sbjct: 160 VNIISGPFEGFVAKVEEVDKEKGSIKAFVDMFGRDTLIDLDFTDIETI 207 >UniRef50_B5YJ95 Transcription termination factor NusG domain protein n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJ95_THEYD Length = 169 Score = 121 bits (305), Expect = 7e-27, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 63/161 (39%), Gaps = 3/161 (1%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 +WY +Y K + + L + + P + + + ++ + PLFP YLFV + Sbjct: 7 NWYCIYVKSRHEFKVFDRLTKAGIEAFLPAVERLRRWKDRKKLIKFPLFPGYLFVCIEKS 66 Query: 63 VIHTTTINATRGVSHFVR--FGASPAIVPSAVIHQLSVYKPKDIVDPAT-PYPGDKVIIT 119 + T GV F++ G I ++ + +DP G +V I Sbjct: 67 YELMLKVLKTPGVVTFIKTPSGEPEPIPEEEIVPLRKAIENGREIDPYPYLKEGQRVKIK 126 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 G G I + + + ++ ++++ + + + +E Sbjct: 127 SGPLAGATGILKKKEKQHFFIISIHILQRAVSVKIDASEVE 167 >UniRef50_A7AFP3 Putative uncharacterized protein n=2 Tax=Parabacteroides RepID=A7AFP3_9PORP Length = 180 Score = 121 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 63/154 (40%), Gaps = 7/154 (4%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEF-DP 61 SWY+LY ++ ++ + V C P+ ++ + V PLF +YLFV DP Sbjct: 24 SWYVLYTAPRAEKQVRDRINALGVECWLPLHRAPRVWSDRVKIVELPLFNSYLFVRCTDP 83 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEG 121 E+ + T + GV+ V + PA+V I + + D PG++V I G Sbjct: 84 ELRNLTRV---YGVARIVYYNGKPAVVRQKEIDAIQDFL--DQASEHALCPGEEVEILCG 138 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVK 155 A + + +L L + + + Sbjct: 139 AMKHVSGKVKKIKKNH-LVLYLEQLGATVCVKLD 171 >UniRef50_A4QBE9 Transcription antitermination protein nusG n=16 Tax=Corynebacterineae RepID=A4QBE9_CORGB Length = 318 Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 69/194 (35%), Gaps = 35/194 (18%) Query: 4 WYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPNY 54 WY++ C G + + +L+ +A + P+ + +I GKR V L P Y Sbjct: 124 WYIIQCYSGYENKVKANLDMRAQTLEVEDDIFEVVVPIEQVTEIRDGKRKLVKRKLLPGY 183 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA------ 108 + V D + + T GV+ FV + V + + + + + +V Sbjct: 184 VLVRMDMNDRVWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLMPQEQAVVTGEAAAAAD 243 Query: 109 -------------------TPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINK 148 G+ V I GAF A + D E + +L+++ + Sbjct: 244 EGEQVVAMPTDTKKPQVAVDFTVGEAVTILTGAFASVSATISSIDPELQKLEVLVSIFGR 303 Query: 149 EIKHSVKNTEFRKL 162 E + + K+ Sbjct: 304 ETPVDLSFDQVEKV 317 >UniRef50_B0RIR6 Transcription antitermination protein nusG n=16 Tax=Actinobacteria (class) RepID=B0RIR6_CLAMS Length = 345 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 65/189 (34%), Gaps = 29/189 (15%) Query: 3 SWYLLYCKRGQLQRAQEHLERQ---------AVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G +R + ++E + PM + +I G+R V+ P Sbjct: 157 KWYVIHSYAGFERRVKSNIENRMVSLNMEDDIYQIEVPMEDVVEIKNGQRKMVNRVRIPG 216 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVP-SAVIHQLSVYKPKDIVDPATPYP 112 Y+ V + + T GV+ FV +P + L V P Sbjct: 217 YVLVRMALNEDSWSVVRHTPGVTGFVGNAHNPTPLRFEEAFSMLKSLVEIKEVAQVKGQP 276 Query: 113 ------------------GDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHS 153 G+ + I EG+F G +E E + +L++L +E Sbjct: 277 TKGGQAQRVVAAEVDFEIGETITIKEGSFAGLPGSISEIKPESGKLTVLVSLFERETPVE 336 Query: 154 VKNTEFRKL 162 + + KL Sbjct: 337 LSFDQVTKL 345 >UniRef50_C9RQP0 Transcription antitermination protein nusG n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQP0_FIBSS Length = 179 Score = 119 bits (298), Expect = 4e-26, Method: Composition-based stats. Identities = 39/174 (22%), Positives = 77/174 (44%), Gaps = 16/174 (9%) Query: 2 QSWYLLYCKRGQL----QRAQEHLERQAVN-----CLAPMITLEKIVRGKRTAVSEPLFP 52 WY ++ GQ +R ++ +ER+ V + P + VRGKR + LFP Sbjct: 3 MQWYAVHTFTGQENNIKKRLEQMIEREGVQDKFGRIIVPTREVVSNVRGKRRISVQNLFP 62 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHF---VRFGASPAIVPSAVIHQLSVYKPKDIVDPAT 109 Y+ +E + + + ++ GV+HF R P + + + +L P++ ++ Sbjct: 63 AYIIIEMELDELTQHLVSTINGVTHFGGMTRASRVPIPLRQSEVDRLLGVDPENSIEGEI 122 Query: 110 PYP---GDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 P G+ V I EG F+GF + E EA+ +++++ + + + Sbjct: 123 QIPYTIGENVCIKEGPFKGFVGVVDEI-MEAKIKVMVSVFGRSTPVELAFNQVE 175 >UniRef50_A4XLK3 Transcription antitermination protein nusG n=10 Tax=Bacteria RepID=A4XLK3_CALS8 Length = 175 Score = 119 bits (298), Expect = 5e-26, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 71/169 (42%), Gaps = 11/169 (6%) Query: 3 SWYLLYCKRGQLQRAQEHLER---------QAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G + + +LE+ + ++ P + +I GK+ + FP+ Sbjct: 7 KWYVVHTYCGYENKVKANLEKIIENRNLSDKILDIRIPTELVTEIKDGKKIVKEKKKFPS 66 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPG 113 Y+ ++ + TI RGV+ FV + P + I + + + +++V+ G Sbjct: 67 YVLIKAVMDNDIWYTIRNVRGVTGFVGPESKPTPLTDEEIEAMGIKE-EEVVEVFDIEVG 125 Query: 114 DKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRK 161 D V I G F F + + E + ++LNL +E + K Sbjct: 126 DNVKIVAGPFADFYGPVIDINKERKKVKVMLNLFGRETPVEFDYHQVEK 174 >UniRef50_A5TS63 Transcription antitermination protein nusG n=10 Tax=Fusobacterium RepID=A5TS63_FUSNP Length = 193 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 36/188 (19%), Positives = 71/188 (37%), Gaps = 26/188 (13%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQ----AV-----NCLAPMITLEKIVRGKRTAVSEPLF 51 ++ W++++ G ++ + LE++ N L P L +IVRGK + LF Sbjct: 6 VRKWFMIHTYSGYEKKVKTDLEQKMETLGFREVVTNILVPEEELTEIVRGKPKKIYRKLF 65 Query: 52 PNYLFVEFDPEVIH-------------TTTINATRGVSHFVRFGASPAIVPSAVIHQLSV 98 P Y+ +E + + T GV+ FV G+ P + + + Sbjct: 66 PAYVMLEMEATREENEHGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFN 125 Query: 99 YKPKDIVDPA---TPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSV 154 GD V I +G+F+ + E D E R +++++ + + Sbjct: 126 IIGVKTPKETIKIDFAEGDYVKILKGSFKDQEGQVAEIDNEHGRVKVMVDIFGRMTPVEI 185 Query: 155 KNTEFRKL 162 + K+ Sbjct: 186 EVDGVLKV 193 >UniRef50_Q9EUG2 Actx protein n=1 Tax=Escherichia coli RepID=Q9EUG2_ECOLX Length = 163 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 42/161 (26%), Positives = 66/161 (40%), Gaps = 18/161 (11%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSE---PLFPNYLFVE 58 WY+L + +HLER + PM T + K+ + E PLFP YLF++ Sbjct: 1 MKWYVLQFTTTRFAAVFKHLERLNFSYYCPMATEKYRRPDKQLSYRERLTPLFPGYLFIQ 60 Query: 59 FDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVII 118 D + +HTTTI F+ FG P VP + + G++ ++ Sbjct: 61 ADFDEVHTTTITGLPHTQRFIAFGGEPLAVPDDEVCNVQ--------------KGERNLL 106 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLIN-KEIKHSVKNTE 158 + I + RSM +LN I K + H +K + Sbjct: 107 NFDEYPRLVEIMMMSEPRMRSMAMLNYITEKSLSHKMKRKK 147 >UniRef50_Q1IKV1 Transcription antitermination protein nusG n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IKV1_ACIBL Length = 194 Score = 118 bits (297), Expect = 6e-26, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 61/159 (38%), Gaps = 4/159 (2%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAV-SEPLFPNYLFVEFDP 61 SW L+ ++ E L + V P+ ++ + ++T + PLFP Y+F F Sbjct: 26 SWSALFTYPRHEKKVAEQLLCRGVESFLPLYAEKRTWKNRQTVTLTLPLFPGYVFARFAR 85 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYP-GDKVIITE 120 + + GV V + + + I +L V P GD+V IT Sbjct: 86 RD--RVRVMSLPGVVSIVERAGAVSSISDHYIEKLRAGIRLGRVRPFREAILGDRVQITS 143 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 G G + + E R ++ + +I + + V E Sbjct: 144 GPLSGLEGVLMHFRSEFRVVVSIGMIGQSVSIEVLRDEI 182 >UniRef50_Q7BQV7 Putative NusG-type transcription antiterminator n=1 Tax=Serratia entomophila RepID=Q7BQV7_9ENTR Length = 160 Score = 118 bits (297), Expect = 6e-26, Method: Composition-based stats. Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 12/157 (7%) Query: 1 MQSWYLLYCKRGQLQ--RAQEHLERQAVNCLAPMITLEKIVRGKR---TAVSEPLFPNYL 55 M+ WYL K G+ +AQ LER + +P++ + + V E +FP YL Sbjct: 1 MERWYLACHKAGKDNVFKAQMTLERMNIMAFSPVMRAYRPRSDRPGQLRPVMEQMFPGYL 60 Query: 56 FVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDK 115 F+ FD E+ H++ I G+SH VRF + AV+ + P + + PG + Sbjct: 61 FIFFDTEIHHSSKIELCPGISHLVRFAGEITPIRDAVVDDVMQL-PVCVQAFSRKNPGKR 119 Query: 116 ------VIITEGAFEGFQAIFTEPDGEARSMLLLNLI 146 + + QA+ DG+ RS L + Sbjct: 120 RWDKGTTPLNHQQRQQIQALVDTKDGDVRSALFFAFV 156 >UniRef50_C4V5M2 Transcription antitermination protein nusG n=2 Tax=Selenomonas RepID=C4V5M2_9FIRM Length = 183 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 35/168 (20%), Positives = 66/168 (39%), Gaps = 11/168 (6%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQ---------AVNCLAPMITLEKIVRGKRTAVSEPLFP 52 ++WY+++ G + + +LER + + P+ ++ GK V +FP Sbjct: 16 RAWYVIHTYSGYENKVKANLERLMHSASMSEMIFDVVVPVENEIEVKDGKEKVVPRKVFP 75 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQ-LSVYKPKDIVDPATPY 111 Y+ V+ + + T GV+ FV P + + + LS + Sbjct: 76 GYVLVDMIVDEHSWYVVRNTTGVTGFVGSEKHPIPLTAEEAERILSGSVGAEPKRRTKVN 135 Query: 112 PGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 GD V IT GAFE + T D + + +++ K + + E Sbjct: 136 VGDTVRITSGAFEDYAGKITSIDMSS-MGVKVDVDGKSLDVEIDQVEL 182 >UniRef50_B3QYK9 Transcription antitermination protein nusG n=3 Tax=Chlorobiaceae RepID=B3QYK9_CHLT3 Length = 203 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 30/170 (17%), Positives = 63/170 (37%), Gaps = 13/170 (7%) Query: 4 WYLLYCKRGQLQRAQEHLERQ----AV-----NCLAPMITLEKIVRGKRTAVSEPLFPNY 54 WY + G ++ +EHL+++ + P ++ GK+ + + FP Y Sbjct: 30 WYTVRTYSGHERKVKEHLDKKIDDAGIRDKIPQVYIPYERFVEVKDGKKKSRVKNAFPGY 89 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYP-- 112 + +E + + V F+ G P + + +L + + T P Sbjct: 90 VLIEAVLDKQTRYLVLDAPSVIGFLGVGDEPTPLRPDEVKRLLEPEQEIERKMVTKAPFE 149 Query: 113 -GDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFR 160 G V I +G F + E + E + +L+N + V ++ + Sbjct: 150 VGGAVKIIDGPFNSLTGVIQEVNAEKMKVKVLINFFGRSTPTEVDFSQVK 199 >UniRef50_C2KN14 Transcription antitermination protein nusG n=3 Tax=Mobiluncus RepID=C2KN14_9ACTO Length = 280 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 35/189 (18%), Positives = 63/189 (33%), Gaps = 30/189 (15%) Query: 4 WYLLYCKRGQLQRAQEHLERQA----------VNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ +R ++++E++ PM ++ R V P P Sbjct: 91 WYVVHTYSSYEKRVKQNIEQRVANNPGMEEWIYQVEIPMEEHIEVKAKSRRKVLRPRIPG 150 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVP-SAVIHQLS--------------- 97 Y+ V D E + T V+ FV P + VI L+ Sbjct: 151 YVLVRMDMEENSWRLVKDTPAVTGFVGNQQDPVPLTLQEVIDMLAPTAAQAAKATVTEDG 210 Query: 98 ---VYKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHS 153 V + G V IT G FE A E + ++ +L+ + +E Sbjct: 211 QIAVSQAVSTQIVTDFEVGQGVTITSGPFETMTATIAEIYPDTSKLKVLVTIFERETPVE 270 Query: 154 VKNTEFRKL 162 + + K+ Sbjct: 271 LNFDQVEKI 279 >UniRef50_Q8R8A2 Transcription antitermination protein nusG n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8R8A2_THETN Length = 179 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 39/168 (23%), Positives = 68/168 (40%), Gaps = 14/168 (8%) Query: 4 WYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPNY 54 WY+++ +R +EH+ A + P+ RGK + E +FP Y Sbjct: 16 WYVVFTYHNAEKRVEEHINSLAKTEKYDGLIIKAEVPVQKRTVSRRGKIKEIEEKIFPGY 75 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGD 114 +FV+ I GV+HFV G P + + D+ + GD Sbjct: 76 VFVKAVMTPEVMAAIRRINGVAHFVGGGNEPVPITPEEVK--RARIQDDLSEE--FKAGD 131 Query: 115 KVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 V+IT+G FE F + +G + + L+L ++E+ + K+ Sbjct: 132 TVMITDGPFENFIGKIIKIEGR-KINIALSLFDREMGIDFSPEQIMKI 178 >UniRef50_C7NC81 Transcription antitermination protein nusG n=10 Tax=Bacteria RepID=C7NC81_LEPBD Length = 207 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 42/191 (21%), Positives = 76/191 (39%), Gaps = 31/191 (16%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKI----------VRGKRTAVSEPLF 51 + WY+++ G ++ LE++ + L + +I RGK+ VS LF Sbjct: 16 KKWYIIHTYSGYEKKVAADLEKR-IESLDLTDKVFRILVPEEEVLEEKRGKQVKVSRKLF 74 Query: 52 PNYLFVEF-------------DPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSV 98 P+Y+ +E + I T GV+ FV G+ P + L Sbjct: 75 PSYVMIEMLSVKEENELGLGYRVDSDAWYVIRNTNGVTGFVGVGSDPIPLSDEEASNLLA 134 Query: 99 YKPKDIVDPATPY------PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIK 151 D+ +P G+ V + G+F+G Q E D E + ++L ++ + Sbjct: 135 KIGIDVEGETSPRIDIDFKVGEVVEVKGGSFDGQQGEIAEIDYEHGKVKVMLEVLGRLTP 194 Query: 152 HSVKNTEFRKL 162 V++TE K+ Sbjct: 195 VEVEHTEIAKI 205 >UniRef50_B6G0A9 Transcription antitermination protein nusG n=3 Tax=Clostridiales RepID=B6G0A9_9CLOT Length = 180 Score = 115 bits (289), Expect = 4e-25, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 67/173 (38%), Gaps = 13/173 (7%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAV---------NCLAPMITL-EKIVRGKRTAVSEPLFP 52 WY+++ G + + +ER + + + P + EK +G ++P Sbjct: 8 KWYVVHTYSGHENKVKATIERAVITRGMENIITHVVVPTENVVEKTPKGNEKIRQRKVYP 67 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD--PATP 110 +Y+ ++ + T+GV+ FV G+ P + + + + P V Sbjct: 68 SYVLIKMIITDESWYVVRNTKGVTGFVGPGSKPVPLSEEEVIAMGIELPAQEVVGGDVDF 127 Query: 111 YPGDKVIITEGAFEGFQAIFTEPDGEAR-SMLLLNLINKEIKHSVKNTEFRKL 162 PGD V I G+F G E + E + LL + ++ ++ K+ Sbjct: 128 EPGDVVKIINGSFAGNVGTVEEVNAEKKEVKLLTEIFGRKSPVTIGIQSIEKI 180 >UniRef50_Q1ITB0 Transcription antitermination protein nusG n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ITB0_ACIBL Length = 182 Score = 115 bits (289), Expect = 4e-25, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 55/161 (34%), Gaps = 4/161 (2%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVR-GKRTAVSEPLFPNYLFVEFDPE 62 W+ + + +R E L + + P+ + G V+ PLFP YLF Sbjct: 14 WFAVQTRHRHEKRVAERLRQSEIETFLPIHRAVHRWKNGINAEVNLPLFPGYLFTRL--R 71 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYP-GDKVIITEG 121 + GV SP + I QL + +P G +V + G Sbjct: 72 GSQRIPLLREPGVIAIAASSNSPTPIGDNEIAQLRLVAESVKAEPHPFLAIGQQVKVVAG 131 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G + I E R ++ + +I + + V E + Sbjct: 132 PLFGMEGILIRKKSEYRVVVSVKIIMRSVAVDVSELEIEPV 172 >UniRef50_D2MPP9 Transcription termination/antitermination factor NusG n=2 Tax=Erysipelotrichaceae RepID=D2MPP9_9FIRM Length = 196 Score = 115 bits (289), Expect = 5e-25, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 64/174 (36%), Gaps = 15/174 (8%) Query: 4 WYLLYCKRGQLQRAQEHLERQ----AVN-----CLAPMITLEKIVRGKRTAVSE-PLFPN 53 WY++ G R +++LE++ + I + ++ V + +FP Sbjct: 20 WYVVNTYAGHENRVKDNLEKRLETMGIQESLFRIFVAEEEEIVIKKNNKSEVKKVNMFPG 79 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRF---GASPAIVPSAVIHQ-LSVYKPKDIVDPAT 109 Y+FV+ + T GV+ F+ GA P V + L D Sbjct: 80 YIFVQMKMTDQAWYVVRNTPGVTGFIGSSGGGAKPFPVSEDEMESILRRMGHGDQKVVVD 139 Query: 110 PYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLI-NKEIKHSVKNTEFRKL 162 GD V I G F + + + + ++ L+ +E + + + +KL Sbjct: 140 FQVGDNVKILTGPFANMIGRISAMNDQTQIATVMTLLFGRETPNEISYGDLQKL 193 >UniRef50_Q83MQ7 Transcription antitermination protein nusG n=1 Tax=Tropheryma whipplei str. Twist RepID=Q83MQ7_TROWT Length = 217 Score = 115 bits (289), Expect = 5e-25, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 64/180 (35%), Gaps = 21/180 (11%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAV---------NCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G +RA+ +LE + V PM + I G+R ++ P Sbjct: 36 KWYVVHSPAGFERRAKANLETRVVSMNADQAIYQVEVPMEDVVGIRNGQRKMITRVRIPG 95 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVP-SAVIHQLSV----------YKPK 102 Y+ V D + T ++ FV P + V L K Sbjct: 96 YVLVRMDLNESSWAVVRNTPWITGFVGNMHQPVPLSFEEVFDMLKTTVSVSQTAARQKRS 155 Query: 103 DIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 V G+ V+I G+F G +E E R +L++L +E + + K Sbjct: 156 VTVSDVDLEVGETVVIKTGSFAGLPGTISEIKPENGRLTVLISLFERETPVELAFDQVEK 215 >UniRef50_B2KEU4 Transcription antitermination protein nusG n=2 Tax=Elusimicrobia RepID=B2KEU4_ELUMP Length = 178 Score = 115 bits (289), Expect = 5e-25, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 69/174 (39%), Gaps = 14/174 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFP 52 ++WY+++ + G + +E + Q L P + ++ + K+ FP Sbjct: 5 KAWYIVHTQTGHEDKVREKILLQVETQNFGDRIFQVLVPTEDVVEVKQNKKVQRKRKFFP 64 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA---T 109 +Y+ VE D I GV+ F+ +P +P I + P Sbjct: 65 SYVLVEMDLTSEAYWFIRNVSGVTGFLG-DPNPVPLPEEEIAAILDLTQPGSGKPKHVIE 123 Query: 110 PYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRKL 162 G+ V ITEG F+ F + E + + + +++N+ ++ + + K+ Sbjct: 124 FEAGENVRITEGPFKHFIGVVQEVNNQKTKLKIMVNVFDRSTPVELDFLQVEKI 177 >UniRef50_C1A6N2 Transcription antitermination protein nusG n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A6N2_GEMAT Length = 181 Score = 115 bits (288), Expect = 6e-25, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 60/174 (34%), Gaps = 17/174 (9%) Query: 4 WYLLYCKRGQLQRAQEHLERQAV------------NCLAPMITLEKIVRGKRTAVSEPLF 51 WY + G + Q ++R+ L P + +I GK+ V +F Sbjct: 6 WYAIQTTSGHENKVQRLIQRKIDMDPAQPEDRLIRQALVPTQQVVEIKNGKKVTVERKIF 65 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD----IVDP 107 P Y+ VE INA +GV FV P + + +L + + Sbjct: 66 PGYVLVEMVASQDTLHEINAIQGVIKFVGKDKDPMPLRDDEVRRLLGQADPADETPVREE 125 Query: 108 ATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFR 160 G V ITEG F F E + + + ++L + + + R Sbjct: 126 IPFLVGQAVAITEGPFADFNGTVEEILPDKGKVRVSVSLFGRPTSVELDYLQLR 179 >UniRef50_P68893 Transcription antitermination protein nusG n=32 Tax=Streptococcus RepID=NUSG_STRP1 Length = 179 Score = 115 bits (288), Expect = 6e-25, Method: Composition-based stats. Identities = 37/171 (21%), Positives = 64/171 (37%), Gaps = 14/171 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFP 52 + W++L G + +E+L ++A + P T+ G+ + E FP Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQTKEIEENRFP 66 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGA---SPAIVPSAVIHQLSVYKPKDIVDPAT 109 Y+ VE + T V+ FV P + I + + + I T Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTIDVFDT 126 Query: 110 -PYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 GD V I +GAF G + E + + L+LN+ E V+ + Sbjct: 127 NIKEGDVVQIIDGAFMGQEGRVVEIEN-NKVKLMLNMFGSETVAEVELYQI 176 >UniRef50_A3I2H8 NusG antitermination factor n=1 Tax=Algoriphagus sp. PR1 RepID=A3I2H8_9SPHI Length = 170 Score = 114 bits (287), Expect = 7e-25, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 58/163 (35%), Gaps = 5/163 (3%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 W+++Y ++ + L P+I + ++ V +PLF Y+FV+ Sbjct: 5 KWFVMYTASRSEKKVAKRLRENGKEVYLPIIEEIRQWSDRKKKVEKPLFNGYVFVKTTRN 64 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAV---IHQLSVYKPKDIVDPATPYPGDKVIIT 119 + + G FV F A V I ++ D + G+KV + Sbjct: 65 QL-WECLQ-VPGAVKFVHFSGQHATVRDEELETIERIISTGVAVESDGSVIEAGEKVEVI 122 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 GA + E + ++ + I + + S+ + L Sbjct: 123 GGALQHMTGEVIEKGNKDYFLIRIPSIYQNMLVSIPRKFLQSL 165 >UniRef50_P57151 Transcription antitermination protein nusG n=17 Tax=Proteobacteria RepID=NUSG_BUCAI Length = 181 Score = 114 bits (287), Expect = 7e-25, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 59/175 (33%), Gaps = 16/175 (9%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAV----------NCLAPMITLEKIVRGKRTAVSEPLF 51 + WY+L G R + + R+ V + P + +I G+R F Sbjct: 7 KRWYVLQAFSGFESRVAQSI-REHVKLNQMEDLFGEVMVPSQEVVEIRGGQRRKSEYKFF 65 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFVRF-GASPAIVPSAVIHQLSVYKPKDIVDP--- 107 P Y+ ++ I V F+ P+ + + + K P Sbjct: 66 PGYVLIQMKMTDSTWHLIRNVPKVLGFIGGKSDKPSPISDKEVEIIINRLRKIGNKPRPK 125 Query: 108 ATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 PG+ + + +G F F + E D E R + +++ + + + K Sbjct: 126 TLFEPGEMIRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRSTPVELDFRQVEK 180 >UniRef50_B9CLA2 Transcription antitermination protein nusG n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CLA2_9ACTN Length = 184 Score = 114 bits (287), Expect = 7e-25, Method: Composition-based stats. Identities = 29/178 (16%), Positives = 61/178 (34%), Gaps = 20/178 (11%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQA---------VNCLAP--MITLEKIV--RGKRTAVSE 48 + WY+L+ G + LE + V+ AP M+T K + + Sbjct: 3 KRWYVLHTYSGYENKVMNDLEHRVEAYGLQDAVVDVQAPGEMVTEVKKRGEKDVTSTKEV 62 Query: 49 PLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA 108 +P Y+ V + + + + T GV+ F+ P+ + +++ Sbjct: 63 KFYPGYVLVRMELDDNTWSVVRNTPGVTGFLGVDGKPSPLRREEFNKMMRRSGGKADATT 122 Query: 109 TPY------PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEF 159 G V + G F I +E + E + ++L + +E + + Sbjct: 123 LKRVTTDVEVGQSVHVLSGPLADFDGIVSEVNAESGKIKVMLTIFGRETPVELTLDQI 180 >UniRef50_C1Z9H7 Transcription antitermination protein nusG n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1Z9H7_PLALI Length = 204 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 33/173 (19%), Positives = 62/173 (35%), Gaps = 15/173 (8%) Query: 4 WYLLYCKRGQLQRAQEHLERQ----AVNCL-----APMITLEKIVRGKRTAVSEPLFPNY 54 WY+L + + +++L R+ + P + + GK+ V L+P Y Sbjct: 31 WYVLKITSNREKSIRDNLLRRIRQEGLEQFFGEILIPTEKVVENKNGKKKVVEHKLYPGY 90 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYP-- 112 L V+ + T GV F P + I ++ + + A Sbjct: 91 LMVQMILNDDTWYIVRTTGGVGDFTGSAGKPTPMQDHEIARMLQKQEQKQESAAPAMKIE 150 Query: 113 ---GDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRK 161 GD V I EG FEGF+ D + +L+ + + ++ + + Sbjct: 151 FAVGDIVKIKEGTFEGFEGPIDSIDEANGKINVLVEIFGRSTPVELEYWQAER 203 >UniRef50_P52852 Transcription antitermination protein nusG n=51 Tax=Bacteria RepID=NUSG_STRGB Length = 309 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 61/183 (33%), Gaps = 24/183 (13%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G R + +LE +A P + +I G R + + P Sbjct: 126 EWYVIHTYAGYENRVKTNLEPRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIKQNKLPG 185 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYP- 112 Y+ V D + T GV+ FV P + I ++ + ++ A P Sbjct: 186 YVLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAARAEGKPA 245 Query: 113 --------------GDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTE 158 G V +T+G F Q I + L+ + E + + Sbjct: 246 PQRKVEVQVLDFEVGASVTVTDGPFATLQTINEIKSDSKKVKGLVEIFGWETPVELSFDQ 305 Query: 159 FRK 161 +K Sbjct: 306 IQK 308 >UniRef50_C0QWX1 Transcription antitermination protein nusG n=2 Tax=Brachyspira RepID=C0QWX1_BRAHW Length = 195 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 73/185 (39%), Gaps = 24/185 (12%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFP 52 WY+++ + G + +E +E++A V+ P T+ GK+ + E +P Sbjct: 11 YKWYIVHTQHGYENKVRERIEKRAKENGMTDLIVDIYIPSETVTSTKNGKKVSKEEFFYP 70 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGAS--------PAIVPSAVIHQL------SV 98 Y+ V+ + + T GV+ F+ A+ P + + + ++ Sbjct: 71 GYVLVKMVMNDATQSMVRRTPGVAGFIGSHATTKEEGNIIPTPLSESDVARIFENREDKS 130 Query: 99 YKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNT 157 + + G+KV + +G F G I + + R + + + + ++ + Sbjct: 131 KTGINEIIGMEFDIGEKVQVIDGPFNGLNGIIENINSDKGRVTVKIEIFGRSTPTELEFS 190 Query: 158 EFRKL 162 + +KL Sbjct: 191 KVKKL 195 >UniRef50_Q1UZH8 Transcription antitermination protein nusG n=4 Tax=SAR11 cluster RepID=Q1UZH8_PELUB Length = 176 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 66/174 (37%), Gaps = 13/174 (7%) Query: 1 MQSWYLLYCKRGQLQRA---------QEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLF 51 M++WY++ + + + + + P + ++ RGKR + F Sbjct: 1 MKNWYIVQSHSNFENKVAGLIKEEAEKAKISDKIEEIVVPTHDVTEVKRGKRIQRKKKYF 60 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT-- 109 P Y+ ++ + + I + VS F+ P V I ++ + P + Sbjct: 61 PGYVLIKSEMDNDLYHLIKNLKRVSGFLGSKGIPVPVSDKEIEKILGQIKDGVAQPKSGI 120 Query: 110 -PYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 G+KV + +G F F + + D E R + +++ + ++ + K Sbjct: 121 EYSIGEKVQVVDGPFASFSGMVEDIDEEKSRLKVSVSIFGRPTPVDLEYNQVEK 174 >UniRef50_A6W3A4 Transcription antitermination protein nusG n=20 Tax=Bacteria RepID=A6W3A4_MARMS Length = 177 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 61/174 (35%), Gaps = 14/174 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHL--------ERQAV-NCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY++ G + L + + + L P + +I GK+ +P Sbjct: 3 KRWYVVQAYSGYEKHVMRSLIERVQVMGQEENFGDILVPTEEVVEIRDGKKRKSERKFYP 62 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFV-RFGASPAIVPSAVIHQLSVYKPKDIVDP---A 108 Y+ V+ D + T V F+ P+ + S + + P Sbjct: 63 GYVLVQMDMNDASWHLVKGTSRVLGFIGGTADKPSPITSREADAILQRVSDGVDKPRPKT 122 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRK 161 G+ V + EG F F + E D ++R + + + + ++ ++ K Sbjct: 123 LFEVGEVVRVNEGPFADFNGVVEEVDYDKSRIKVAVLIFGRSTPVDLEFSQVEK 176 >UniRef50_C8NX40 Transcription antitermination protein nusG n=1 Tax=Corynebacterium genitalium ATCC 33030 RepID=C8NX40_9CORY Length = 342 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 69/197 (35%), Gaps = 37/197 (18%) Query: 3 SWYLLYCKRGQLQRAQEHL---------ERQAVNCLAPMITL-EKIVRGKRTAVSEPLFP 52 SWY++ G + + +L E + + P+ + EK GK+ V L P Sbjct: 145 SWYIIQSYSGYENKVKTNLDMRIQTLEVEESIYDVVVPIEQVFEKDKNGKKKIVKRKLLP 204 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQ----------------- 95 Y+ V D + + T GV+ FV + V + + Sbjct: 205 GYVLVRMDLNDAAWSVVRETPGVTSFVGNEGNATPVKHRDVAKFLMPKAAPVDGEATASE 264 Query: 96 --------LSVYKPKDIVDPA-TPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNL 145 +++ + ++ + A G+ V I GA A E D E + L+++ Sbjct: 265 ANTEGETVIAMPEQEEKPNVAHDFQVGEAVTILSGALASVSATINEIDPETGKIQALVSI 324 Query: 146 INKEIKHSVKNTEFRKL 162 +E + + ++ Sbjct: 325 FGRETPVELTADQIERI 341 >UniRef50_Q6TFR9 ORF9 n=1 Tax=Erwinia amylovora RepID=Q6TFR9_ERWAM Length = 155 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 37/162 (22%), Positives = 63/162 (38%), Gaps = 12/162 (7%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSE---PLFPNYLFV 57 M++WY+L + + L+ + L PM K ++ + P FP YLFV Sbjct: 1 MKNWYVLAFTSNKFGAVERFLKLNKIEFLCPMHEHSYSRPDKSFSIRKSLVPTFPGYLFV 60 Query: 58 EFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVI 117 D H + + + + F +P VP I + +V A+ Sbjct: 61 YLDFNETHPEKLARFQYIYGLITFSNAPMAVPEVTIQVI--AYTCSVVKTASSVK----K 114 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 I F AI + + RS++LLN + + SVK ++ Sbjct: 115 IIS---HDFAAILLTEEPKKRSVMLLNYLCENHSQSVKEVKY 153 >UniRef50_Q9ZK20 Transcription antitermination protein nusG n=52 Tax=Epsilonproteobacteria RepID=NUSG_HELPJ Length = 176 Score = 112 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 65/175 (37%), Gaps = 13/175 (7%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKI-VRGKRTAVSEPL 50 M WY + G Q ++ +E A + P + ++ + K + L Sbjct: 1 MMDWYAIQTYSGSEQSVKKAIENLANDHDIRDRIQEIIVPTEDIIEVSKKSKTKVMERSL 60 Query: 51 FPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT- 109 +P Y+F++ D + + I + VS F+ P + A I + Sbjct: 61 YPGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAAPKPKI 120 Query: 110 -PYPGDKVIITEGAFEGFQAIFTEPDGEARSMLL-LNLINKEIKHSVKNTEFRKL 162 G+ V + EG F F A E D E R + L +++ + + ++ K+ Sbjct: 121 FFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRTTPIEILYSQVEKI 175 >UniRef50_D0MHN6 Transcription antitermination protein nusG n=80 Tax=Bacteria RepID=D0MHN6_RHOM4 Length = 186 Score = 112 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 66/175 (37%), Gaps = 14/175 (8%) Query: 1 MQSWYLLYCKRGQLQRAQEHLER---------QAVNCLAPMITLEKIVRGKRTAVSEPLF 51 ++ WY+L G ++ +++LER + L P T+ ++ GK+ F Sbjct: 10 VRKWYVLRTFSGHEKKVKQYLEREIERLGLQDRVGQILIPTETVFELRGGKKRTRERTFF 69 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK----DIVDP 107 P Y+ +E + I V F+ G P + + ++ + Sbjct: 70 PGYILIEAVLDRELQHLIANMPSVVGFLGSGDQPTPLRPDEVRRILGKVDEAREMGEQPE 129 Query: 108 ATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 PGD V I EG F F + E + + +++++ ++ V + + Sbjct: 130 IPFKPGDVVRIIEGPFNNFTGVVEEVYPDKLKLKVMVSIFGRKTPLEVDYLQVER 184 >UniRef50_A6CA55 Transcription antitermination protein nusG n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CA55_9PLAN Length = 194 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 63/174 (36%), Gaps = 16/174 (9%) Query: 4 WYLLYCKRGQLQRAQEHLERQAV----------NCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+L + + + ++ L R + + P + + GK+ L+P Sbjct: 22 WYVLKVQSNREKSIRDALLR-GIKRDGLEEYFGEIIIPTEKVVETKGGKKRVFERKLYPG 80 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA----T 109 YL ++ + + +T GV F P + I ++ + P Sbjct: 81 YLMIQVELNDDSWYLVRSTNGVGDFTGAAGKPIPMQEHEIARMLGREESKEETPVKIKLD 140 Query: 110 PYPGDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRKL 162 GD V + + FEGF+ D + +L+ + ++ ++ + K+ Sbjct: 141 FQVGDVVKVKDATFEGFEGTIDAVDEASGKVTVLIEIFSRPTPTELEYWQIEKV 194 >UniRef50_C7GYQ7 Transcription antitermination protein nusG n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GYQ7_9FIRM Length = 198 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 69/174 (39%), Gaps = 17/174 (9%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLF 51 + WY+++ G Q+ ++++ + + P +I G+R + F Sbjct: 30 VARWYVVHTYSGHEQKVKDNILKIVESRGMGDLILKINIPTEEKVEIKNGQRKSRKVKQF 89 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY 111 Y+ ++ + T+GV+ FV G P + + + +L + + ++ Sbjct: 90 IGYILIKMKVTNESWYVVRNTQGVTGFVGQGKKPVPLTAEEVRRLGI---EKVIVNLKIK 146 Query: 112 PGDKVIITEGAFEGFQAIFTEPDGEA---RSMLLLNLINKEIKHSVKNTEFRKL 162 PGD + + G FEG E D E R+ + + +E ++ + KL Sbjct: 147 PGDTIKVINGPFEGHNGEVIEVDEEHETLRAKIF--MFGRETPVDLEYEQIDKL 198 >UniRef50_Q6AP83 Transcription antitermination protein nusG n=1 Tax=Desulfotalea psychrophila RepID=Q6AP83_DESPS Length = 177 Score = 112 bits (280), Expect = 5e-24, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 69/172 (40%), Gaps = 14/172 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQ----AVN-----CLAPMITLEKIVRGKRTAVSEPLFP 52 + WY+L G ++ + LE + + L P + ++V+G R S+ FP Sbjct: 3 KQWYILQAHSGFEEKVKLTLEDRIKKDGLEDFFGDILVPTEQVVEMVKGSRKTSSKKFFP 62 Query: 53 NYLFVEFDPEVIHTTTIN-ATRGVSHFVRFGASPAIVPSAVIHQL--SVYKPKDIVDPAT 109 Y+ + + T++ V FV +P + ++ + + + P Sbjct: 63 GYMLINMELTDETWHTVHENMPRVVGFVGDDRNPMPLSDEEAAKIIGRIQEGSERPRPKV 122 Query: 110 PY-PGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEF 159 + G+ V + +G F FQ + E + R +++++ +E ++ + Sbjct: 123 IFDVGENVRVIDGPFSNFQGVVDEVFPDKGRVRVMVSIFGRETPVELEFVQV 174 >UniRef50_B1ZPC3 Transcription antitermination protein nusG n=3 Tax=Verrucomicrobia RepID=B1ZPC3_OPITP Length = 192 Score = 111 bits (279), Expect = 7e-24, Method: Composition-based stats. Identities = 36/179 (20%), Positives = 71/179 (39%), Gaps = 21/179 (11%) Query: 3 SWYLLYCKRGQLQRAQ---------EHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 W+ L+ GQ + + E L+ L P + ++ GK++ L+P Sbjct: 12 QWFALHTLSGQENKVKAYIDKFKKAEELDDSIFEVLLPTEIVSEVKGGKKSTKVRKLYPG 71 Query: 54 YLFVEF-----DPEVIH--TTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK---D 103 Y+F++ D +VI+ + GV FV G PA + + I ++ Sbjct: 72 YVFIQMRLYGEDKKVINKPWYFVKEVAGVIGFVG-GDRPAALRQSEIDEIRARIEAANGK 130 Query: 104 IVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 V G++V IT+GAF E D E + + +++ + ++ + ++ Sbjct: 131 EVPKVQYSVGEEVKITDGAFASLTGRIDEIDPERGKLKVSVSIFGRFTPVELEYWQVQR 189 >UniRef50_B7UF78 Similar to transcriptional activator n=1 Tax=Yersinia pseudotuberculosis RepID=B7UF78_YERPS Length = 152 Score = 111 bits (278), Expect = 8e-24, Method: Composition-based stats. Identities = 47/151 (31%), Positives = 71/151 (47%), Gaps = 15/151 (9%) Query: 1 MQSWYLLYCKRGQL--QRAQEHLERQAVNCLAPMITLEKIVRGKR--TAVSEPLFPNYLF 56 M +WYL + G+ +AQ L R ++ P+I L + + + EPLF Y+F Sbjct: 1 MFNWYLACHQPGKETLYKAQLELSRLHIDSFCPLIRLSRPRPDRPSGRLIIEPLFSGYIF 60 Query: 57 VEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKV 116 ++FDPE+ HTT + A VSHFV+FG +P VI L P P D Sbjct: 61 IQFDPEITHTTKLTALSSVSHFVKFGCDIRPIPKTVIESLMKL-------PLCPTEQD-- 111 Query: 117 IITEGAFEG-FQAIFTEPDGEARSMLLLNLI 146 + G F+ AI + R+++ L L+ Sbjct: 112 -VIAGRFKEKIVAITRVSNKHERTVMFLALM 141 >UniRef50_C4XIP4 Transcription antitermination protein nusG n=6 Tax=Proteobacteria RepID=C4XIP4_DESMR Length = 187 Score = 111 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 66/171 (38%), Gaps = 13/171 (7%) Query: 4 WYLLYCKRGQLQRAQEHLERQ--------AV-NCLAPMITLEKIVRGKRTAVSEPLFPNY 54 WY+++ G R + L ++ + P + ++V+G++ + +P Y Sbjct: 16 WYIVHTYSGFENRVELTLREMMRTGQDGGSIKEVVVPTEKIIELVKGEKKTSTRKFYPGY 75 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAV---IHQLSVYKPKDIVDPATPY 111 + V+ + + + V+ F+ P + + I L V + + Sbjct: 76 VMVKMAMDDNSWHLVQSIPRVTGFIGGKNQPTPMRDSEAQKILSLMVSRQEQPRPKYHFE 135 Query: 112 PGDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRK 161 GD V + +G F GF + + + + + + +++ ++ + + K Sbjct: 136 RGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 186 >UniRef50_Q2RYZ3 Putative uncharacterized protein n=2 Tax=Salinibacter ruber DSM 13855 RepID=Q2RYZ3_SALRD Length = 280 Score = 110 bits (276), Expect = 1e-23, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 64/162 (39%), Gaps = 7/162 (4%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 W + Y + ++ + L+ + ++ + P T + + ++EPLF NYLF D Sbjct: 116 WRVFYTRARAEKKCETRLDERRIDVMVPKKTEVRQWSDRTKEITEPLFRNYLFARVD--E 173 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQL-SVYKPKDIVDPATPYP--GDKVIITE 120 + T G+ V F PA + + +L + + A P G+ V IT Sbjct: 174 KDRLRVLRTNGIVRCVHFDGEPARLREETVDRLQKAQAVPERLSTADLRPAVGETVTITG 233 Query: 121 GA--FEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 G +G + G+ ++ + + + +K V + Sbjct: 234 GPERLQGLTGKVLQHRGQTYLLVQVRAVRQAVKIEVAADWVQ 275 >UniRef50_Q2JTQ7 Transcription antitermination protein nusG n=10 Tax=Synechococcus RepID=Q2JTQ7_SYNJA Length = 223 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 36/181 (19%), Positives = 70/181 (38%), Gaps = 23/181 (12%) Query: 4 WYLLYCKRGQLQRAQEHL---------ERQAVNCLAPMITLEKI-VRGKRTAVSEPLFPN 53 WY + G + + L Q V + P T K+ GKR E +FP Sbjct: 41 WYAVQVASGCENKVKSTLMQRAAALDVADQIVEVVIPKRTGFKLDRSGKRQEQEEKIFPG 100 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVR------FGA-----SPAIVPSAVIHQL-SVYKP 101 Y+ V D + T V +FV +G +P + + + ++ S + Sbjct: 101 YVLVRMDLNDDTWMVVKTTPNVINFVGTEERRAYGRGRGHVTPRPLSPSEVQRIFSSVEV 160 Query: 102 KDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFR 160 +++ PGD++ + G F+GF + E + L+++ ++ ++ + R Sbjct: 161 EEVPLKIDMAPGDRIEVLSGPFQGFYGEVVDVSPERGKLKALISIFGRDTPVELEFGQVR 220 Query: 161 K 161 K Sbjct: 221 K 221 >UniRef50_Q1QKQ8 Transcription antitermination protein nusG n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QKQ8_NITHX Length = 196 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 71/187 (37%), Gaps = 31/187 (16%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKR--------TAVSEPLFPNYL 55 WY+L + +A L + + AP++ ++ G+R ++ P+FP Y+ Sbjct: 7 WYVLQTRPAHEDKAARGLVARGFDPYAPVV-YRRVPTGRRDDKGRKLTREIARPMFPGYI 65 Query: 56 FVEFDPEVIHTTTINATRGVSHFVR-FGASPAIVPSAVIHQLSVYKPKDI---------- 104 FV+FD + G++ +++ P VP + ++V + ++ Sbjct: 66 FVQFDAGDEKFAEVRIVPGITGYLKDEAGEPQAVPDVAMDLIAVSETEEFGRYLDEEERA 125 Query: 105 -----------VDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHS 153 P GD V + G ++ + ++ D R +LL ++ +E K Sbjct: 126 RRAALRASKRKRGPPEFKAGDDVRVVRGEWKDWIMKVSKADDLGRVVLLFHIFGRETKIH 185 Query: 154 VKNTEFR 160 + Sbjct: 186 ADQADLE 192 >UniRef50_P65591 Transcription antitermination protein nusG n=84 Tax=Bacteria RepID=NUSG_NEIMA Length = 178 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 63/175 (36%), Gaps = 14/175 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAV---------NCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY++ G + Q LE + L P+ + I G++T +P Sbjct: 3 KKWYVVQAYSGFEKNVQRILEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKSYP 62 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFV-RFGASPAIVPSAVIHQLSVYKPKDIVDP---A 108 Y+ VE + + +T VS F+ P + + I P Sbjct: 63 GYVLVEMEMTDDSWHLVKSTPRVSGFIGGRANRPTPISQREAEIILQQVQTGIEKPKPKV 122 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEARSM-LLLNLINKEIKHSVKNTEFRKL 162 G +V + EG F F + E + E + + + + +E ++ ++ K+ Sbjct: 123 EFEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQIFGRETPVELEFSQVEKI 177 >UniRef50_Q1D5E3 NusG-like protein n=2 Tax=Myxococcus xanthus RepID=Q1D5E3_MYXXD Length = 168 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 54/162 (33%), Gaps = 7/162 (4%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 W L + + A L + P T K K PLFP YLF + P Sbjct: 10 DWVALLVRVNHEKVAAAQLGKHGYEFFLPTYTPPKSSGVKAKL---PLFPGYLFCRYQP- 65 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA--TPYPGDKVIITE 120 ++ I GV + A P VP+ + + + G +V I E Sbjct: 66 -LNPYRIVRAPGVIRLLGGDAGPEAVPAQELEAIRRVADSGVSSNPCDYLRVGQRVRIIE 124 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G G + + R ++ + L+ + + V + + Sbjct: 125 GPLTGLEGSLVTSKSQLRFIVSVGLLQRSVSVEVSAEQLEPI 166 >UniRef50_UPI000174528A NusG antitermination factor n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174528A Length = 158 Score = 108 bits (270), Expect = 7e-23, Method: Composition-based stats. Identities = 34/141 (24%), Positives = 52/141 (36%), Gaps = 4/141 (2%) Query: 22 ERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRF 81 + + V P I ++ + E LFP+Y F F H + T V V F Sbjct: 3 QLEHVETFCPRIRFQRSTPRGKVWFVEALFPSYFFARFVYSEAHRA-VKHTHNVIRIVGF 61 Query: 82 GASPAIVPSAVIHQLSVYKPKDIVDPATP--YPGDKVIITEGAFEGFQAIFTEP-DGEAR 138 G PA +P I L + GD V + EG G + + GE R Sbjct: 62 GGDPAPIPDLTIENLREEMQGAELREVKYGVEVGDTVEVAEGPMRGLKGVVESLASGEQR 121 Query: 139 SMLLLNLINKEIKHSVKNTEF 159 LLL + ++ V+ ++ Sbjct: 122 VKLLLEFLGRQSLVEVQASKL 142 >UniRef50_B1VAN1 Transcription antitermination protein nusG n=6 Tax=Acholeplasmataceae RepID=B1VAN1_PHYAS Length = 204 Score = 108 bits (270), Expect = 8e-23, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 66/173 (38%), Gaps = 14/173 (8%) Query: 4 WYLLYCKRGQLQRAQEHLERQ----AV-----NCLAPMITLEKIVR-GKRTAVSEPLFPN 53 WY+ G ++ L R+ + N L+P T + GK+T+ L+P Sbjct: 31 WYIAQTYLGYENTVKQDLLRRVESLGIGELISNVLSPRETYYETRADGKKTSKERNLYPG 90 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGA---SPAIVPSAVIHQLSVYKPKDIVDPATP 110 Y+F+E + T ++ F+ P + I+ + Sbjct: 91 YVFIEMIITDHSWFVVKNTPRITGFLGSSGMSSKPIPLSEKEINPVLFKMGIMSKPNYDH 150 Query: 111 YPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162 G KV I G+ QA + D + + ++ ++L + + + ++F+++ Sbjct: 151 LIGKKVEIISGSLANQQAKVSIIDNDREKIIVEVDLFGRTVPVEISFSDFKEI 203 >UniRef50_A0Q872 Transcription antitermination protein nusG n=11 Tax=Francisella RepID=A0Q872_FRATN Length = 177 Score = 107 bits (269), Expect = 8e-23, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 66/174 (37%), Gaps = 17/174 (9%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNC----------LAPMITLEKIVRGKRTAVSEPLFPN 53 WY++ G +R + LE + L P + ++ G++ FP Sbjct: 3 WYVVQVHSGYEKRVKAQLEE-NIEIAGLKNNFGRILVPTENVVEMKGGQKRKSERKYFPG 61 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLS--VYKPKDIVDP---A 108 Y+ +E D + + V V P + A + ++ V K V+P Sbjct: 62 YVLIEADLSTDAWNLVKSVPRVLTVVGSKGKPIPLSKAEVDRILGFVEGSKSTVEPRLRK 121 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 + + G+ V + EG F F + E + E R + +++ + ++ ++ K Sbjct: 122 SYHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 175 >UniRef50_Q2NTN8 Putative uncharacterized protein n=1 Tax=Sodalis glossinidius str. 'morsitans' RepID=Q2NTN8_SODGM Length = 147 Score = 107 bits (269), Expect = 9e-23, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 51/147 (34%), Gaps = 10/147 (6%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSE---PLFPNYLFV 57 + SWYLL K HL V PMI + + + P+FP YLFV Sbjct: 8 IMSWYLLRFKATLFNMVFNHLAASGVYYFCPMIETQYRRPDSVASFRKRLSPVFPGYLFV 67 Query: 58 EFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVI 117 D + H ++A R + + FG P+ + AVI L P + Sbjct: 68 NLDFDHCHPQKLSAHRHIYGLINFGQGPSPIDDAVIDLLMAKPHIVRKIIDAPRAWKE-- 125 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLN 144 + I D E R LN Sbjct: 126 -----MSELEKIMYICDDEQRIAAFLN 147 >UniRef50_C9Y5P4 Transcriptional activator rfaH n=3 Tax=Enterobacteriaceae RepID=C9Y5P4_CROTZ Length = 156 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 37/98 (37%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKR--TAVSEPLFPNYLFVE 58 M WY+LYC +QR E V P R +PLFP+YLF+ Sbjct: 8 MYKWYVLYCNSQDIQRISRRAEDIGVEVFCPRYIKVTPRTDCRAVRQEEKPLFPSYLFLR 67 Query: 59 FDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL 96 FD V+HT+TI + G FV FGA+P VP +VI + Sbjct: 68 FDVNVVHTSTITSIPGAHGFVSFGAAPCTVPESVITAI 105 >UniRef50_B3T6R2 Putative transcription termination factor nusG n=2 Tax=prokaryotic environmental samples RepID=B3T6R2_9ZZZZ Length = 272 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 33/174 (18%), Positives = 63/174 (36%), Gaps = 14/174 (8%) Query: 3 SWYLLYCKRGQLQRAQEHL---------ERQAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+L G R ++ + E P + + GK+ V++ FP Sbjct: 97 KWYILQAYSGYEGRVEQTIREKLRIKGIEHLVDEIFIPSEDIIRTKEGKKRKVNQKYFPG 156 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFV-RFGASPAIVPSAVIHQLSVYKPKDIVDPATP-- 110 Y+ + + + VS F+ P + + ++ + AT Sbjct: 157 YVLIHMELTPELWHLLMNVNRVSGFIGGTQKKPLPLDEKELEEIRSQVNEGFQQKATEDE 216 Query: 111 -YPGDKVIITEGAFEGFQAIFTEPDGEARSM-LLLNLINKEIKHSVKNTEFRKL 162 G KV ITEG+F F E + E R + +L+++ + V+ + + Sbjct: 217 YSVGQKVTITEGSFGNFSGTIDEVNLERRKLKVLVSIFGRPTPVEVEFENVKHV 270 >UniRef50_B3EL56 Transcription antitermination protein nusG n=8 Tax=Chlorobiaceae RepID=B3EL56_CHLPB Length = 193 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 63/172 (36%), Gaps = 13/172 (7%) Query: 4 WYLLYCKRGQLQRAQ---------EHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNY 54 WY L G ++ + + LE + + P ++ GK+ ++++ FP Y Sbjct: 20 WYALRIYSGHERKVKEGIELEVERQALEDKILQVYVPYEKFVEVRNGKKRSLTKNAFPGY 79 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYK---PKDIVDPATPY 111 + +E + I V F+ P + + ++ + + V A Sbjct: 80 VLIEAILDKQTKNLIMDIPSVMGFLGVNDIPTPLRPDEVEKILEPESTVEQRSVVEAPFR 139 Query: 112 PGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162 GD V + +G F + + E + ++++ + + ++ + + Sbjct: 140 VGDTVKVIDGPFSSLTGVVHDVCVERMKVKVMISFFGRSTPTELDFSQVKSI 191 >UniRef50_C4LL90 Transcription antitermination protein nusG n=5 Tax=Corynebacterium RepID=C4LL90_CORK4 Length = 353 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 62/199 (31%), Gaps = 39/199 (19%) Query: 3 SWYLLYCKRGQLQRAQEHLE---------RQAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY++ C G + + LE Q + P+ ++ GKR V L P Sbjct: 154 EWYIVQCYSGYENKVKTDLEVRSQTLGVDEQIHEVVVPIEEEVEVKDGKRKVVKHKLLPG 213 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA----- 108 Y+ + + + + I T G++ FV P V + + + Sbjct: 214 YVLMRIELDDASWSVIRDTPGITSFVGNEGHPTPVKIREVAKFLLPPETATQKAEQEGEE 273 Query: 109 ------------------------TPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLL 143 G+ V + G F A +E D E + L+ Sbjct: 274 PAAVDVSSTGVAAPPRPSADKVKVDYEVGEAVTVLSGPFASVSATISEIDAENSKLKALV 333 Query: 144 NLINKEIKHSVKNTEFRKL 162 ++ +E + + K+ Sbjct: 334 SIFGRETPVELDFDQVEKI 352 >UniRef50_C0W699 Transcription antitermination protein nusG n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W699_9ACTO Length = 263 Score = 107 bits (267), Expect = 2e-22, Method: Composition-based stats. Identities = 46/204 (22%), Positives = 75/204 (36%), Gaps = 47/204 (23%) Query: 3 SWYLLYCKRGQLQRAQEH---------LERQAVNCLAPMITLEKIVR-GKRTAVSEPLFP 52 WY+L+ G +R LE + + PM T+ ++ GK+ VS P Sbjct: 63 EWYVLHTYSGYERRVAADIMARAENFELEDYVFDAVVPMETVIEVKSAGKKKEVSRVRIP 122 Query: 53 NYLFVEFDPEVIH-----TTTINATRGVSHFVRFGASPAIVP---SAVIHQL-------- 96 Y+FV D + TI T V+ FV G VP + QL Sbjct: 123 GYVFVRMDLDDPETSDRVWRTIKDTPAVTGFV--GDRYNPVPLTFDEAVSQLGPTPEEVA 180 Query: 97 -----------------SVYKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGE-AR 138 V + + + A G+ VI+T+G FE A +E E + Sbjct: 181 AKQAAAANAAPEEGGRTQVVEGGQVYEVA-FEVGESVIVTDGPFESLPATISEIHPETQK 239 Query: 139 SMLLLNLINKEIKHSVKNTEFRKL 162 +L++L ++ + T+ K+ Sbjct: 240 LQVLISLFGRDTPAELSFTQVAKI 263 >UniRef50_A6GCJ0 Transcription antitermination protein nusG n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GCJ0_9DELT Length = 176 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 32/169 (18%), Positives = 61/169 (36%), Gaps = 17/169 (10%) Query: 9 CKRGQLQRAQEHLERQ----AVN-----CLAPMITLEKIVRGKRTAVSEPLFPNYLFVEF 59 G ++ LE + + L P + + ++ + FP Y+FV Sbjct: 3 TFSGYENTVKKSLEDRIKKNELEECFEDILVPSEQVIEQRGKRQVKQTRKFFPGYIFVRM 62 Query: 60 DPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL-------SVYKPKDIVDPATPYP 112 + T VS F+ G +P V + ++ V + + +V Sbjct: 63 RLTKPAWHLVKNTPKVSGFLSSGKTPKPVSQREMDRMLGKTEPKQVTEEEVVVPDIDYSV 122 Query: 113 GDKVIITEGAFEGFQAIFTEPDGEARSMLL-LNLINKEIKHSVKNTEFR 160 GD+V + GAF F E + E R + L +++ + + V +E Sbjct: 123 GDQVRVKSGAFANFSGEVEEVNTEKRKIKLSVSIFGRPTRVEVDFSEVE 171 >UniRef50_B3E158 Transcription antitermination protein nusG n=3 Tax=Verrucomicrobia RepID=B3E158_METI4 Length = 201 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 34/180 (18%), Positives = 73/180 (40%), Gaps = 21/180 (11%) Query: 2 QSWYLLYCKRGQLQRAQEHLER-------QAV--NCLAPMITLEKIVRGKRTAVSEPLFP 52 WY L+ GQ ++ +++LE+ Q + + P+ + ++ +GKR ++ L+P Sbjct: 21 MQWYALHVLSGQEEKVKKNLEKRIKTEEMQDLVGEVVIPVERVSEVRKGKRIEINRKLYP 80 Query: 53 NYLFVEFDPEVIH-------TTTINATRGVSHFVRFGASPAIVPSAVIH-QLSVYKP--K 102 Y+F++ + T GV F G +P +P + L + Sbjct: 81 GYVFLQIQLRDSSGKLIERAWYFVRETSGVIGF-ADGDNPLPMPREQVEGMLRQIQERTS 139 Query: 103 DIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 + GD+V + +G F + + E D E + + +N+ + ++ + K Sbjct: 140 SALPKTVFSVGDRVKVGDGPFLNSEGVIEEVDLERGKLRVSVNIFGRSTPVELEYWQVEK 199 >UniRef50_B9YBP8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YBP8_9FIRM Length = 171 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 40/171 (23%), Positives = 79/171 (46%), Gaps = 11/171 (6%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD- 60 +WY+L+ + G ++ ++ Q +N P + + +G V + +FP YLF+E + Sbjct: 1 MNWYVLFVRGGMEEKIRDFFLSQGLNAFIPKMKVVFRKQGISELVEKIMFPGYLFIESEL 60 Query: 61 -----PEVIHTTTINATRGVSHFVRFG--ASPAIVPSAVIHQLSVYKPKDIVDPAT-PYP 112 E I + T G+ ++F +PA+ + + +++ +T Sbjct: 61 EQAAMDEQIKELRMQKT-GIVKLLKFDKEGTPALRSEEKDYLERLLGKNKVLEHSTGLIQ 119 Query: 113 GDKVIITEGAFEGFQAIFTEPDGEARSMLL-LNLINKEIKHSVKNTEFRKL 162 G++VIITEG +GF++ + D R +L L L + + SV +K+ Sbjct: 120 GNQVIITEGPLQGFESQIVKIDRHKRRAVLELELCGQPRRVSVSLEIVQKI 170 >UniRef50_P36265 Transcription antitermination protein nusG n=48 Tax=cellular organisms RepID=NUSG_SYNY3 Length = 205 Score = 104 bits (261), Expect = 7e-22, Method: Composition-based stats. Identities = 31/181 (17%), Positives = 66/181 (36%), Gaps = 23/181 (12%) Query: 4 WYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAV-SEPLFPN 53 W+ + G +R + +LE++ + P + KI + E +FP Sbjct: 23 WFAVQVASGCEKRVKLNLEQRIHTLDVADRILQVEIPKTPIVKIRKDGARVQGEEKIFPG 82 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVR------FGAS-----PAIVPSAVIHQL-SVYKP 101 Y+ + + + T V +FV +G P + + ++ Sbjct: 83 YVLIRMIMDDDAWQVVKNTPHVINFVGSEQKRHYGRGRGHVLPMPLSHGEVERIFRHVDE 142 Query: 102 KDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFR 160 ++ V GD +++ G F+ F+ E E + LL++ +E ++ T+ Sbjct: 143 QEPVVKIDMEIGDHIMVLSGPFKDFEGDVIEVSPERSKLKALLSIFGRETPVELEFTQVE 202 Query: 161 K 161 K Sbjct: 203 K 203 >UniRef50_UPI0001B49F58 putative LPS-related regulatory protein n=1 Tax=Bacteroides fragilis 3_1_12 RepID=UPI0001B49F58 Length = 177 Score = 104 bits (261), Expect = 9e-22, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 6/148 (4%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY +Y ++ +E L++ ++ P+ + ++ ++ + P+ P LFV E Sbjct: 15 WYAVYTAPRAEKKVKEQLDKIGIDNYLPLQPVIRMWNNRKKKIFIPVVPGCLFVYISSEE 74 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDI----VDPATPYPGDKVIIT 119 I I + GV+ ++ +P + + P PG V + Sbjct: 75 I--AQITSIHGVAFLLKEKGQYVSIPEVQMETFRTMIERSHELVEFAPTDFVPGSTVQVI 132 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLIN 147 G +G A E G + +L + + Sbjct: 133 RGQLQGLVAELVECQGNNKLLLRIEGLG 160 >UniRef50_Q5LEP1 Putative LPS-related regulatory protein n=4 Tax=Bacteroides RepID=Q5LEP1_BACFN Length = 176 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 28/148 (18%), Positives = 59/148 (39%), Gaps = 6/148 (4%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY +Y ++ +E L++ V P+ + ++ ++ + P+ P LFV E Sbjct: 15 WYAVYTAPRAEKKVKEQLDKIGVENYLPLQPVVRLWNNRKKKIFIPVVPGCLFVHISSEE 74 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLS--VYKPKDIVD--PATPYPGDKVIIT 119 I + GV+ ++ +P + + ++V+ P PG V + Sbjct: 75 I--AHVAGIHGVAFLLKEKGQYVSIPEVQMETFKTMIEHSCELVEFAPNEFVPGTVVRVI 132 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLIN 147 G +G +A E G + +L + + Sbjct: 133 SGQLQGLEAELVECQGNNKLLLRVEGLG 160 >UniRef50_A3ZLI3 Transcription antitermination protein nusG n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLI3_9PLAN Length = 294 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 61/177 (34%), Gaps = 16/177 (9%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQ----AVNCL-----APMITLEKIVRGKRTAVSEPLFP 52 WY+L + + + +L R+ + P + + GK+ L+P Sbjct: 118 MDWYILKVQSNREKSICANLWRRVKMAGLEAYFDEVMVPTEDIVEFKNGKKKITKRKLYP 177 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA---- 108 Y+ V + T G+ F P + + + +++ + Sbjct: 178 GYIVVHMAINDDTWFLVRETGGIGDFTGAAGRPTPMLAHEVERITKKVEDEETGEEPVKT 237 Query: 109 --TPYPGDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRKL 162 GD V ITEG FE F+ D R +++N+ + +++ + + Sbjct: 238 NIRFKLGDHVRITEGTFENFEGDVEGIDETNGRVTVMINIFGRTTPVEMEHWQMEPV 294 >UniRef50_B0A697 Transcription antitermination protein nusG n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A697_9CLOT Length = 179 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 31/164 (18%), Positives = 64/164 (39%), Gaps = 20/164 (12%) Query: 3 SWYLLYCKRGQLQRAQEHLER----QAVN-----CLAPMITL-EKIVRGKRTAVSEPLFP 52 WY+++ G + + +E + + + P + E GK ++P Sbjct: 8 KWYVVHTYSGHENKVKATIENSVKNRGMEDYIKQVIVPTEDVIETTKTGKEKVRQRKIYP 67 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYP 112 +Y+ ++ + T+GV+ FV G+ P + + + + K Sbjct: 68 SYVLIQMIITDESWYIVRNTKGVTGFVGPGSKPVPLSEEEVKSMGIDLDKIGEKRTEIEV 127 Query: 113 GDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKN 156 G+ V + +G F+G + E L+L N+++K SV N Sbjct: 128 GEVVNVRDGVFKGQSGVVKE----------LDLKNEKVKISVNN 161 >UniRef50_Q6MJ02 Transcription antitermination protein nusG n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MJ02_BDEBA Length = 177 Score = 102 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 68/174 (39%), Gaps = 14/174 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQ-------AV--NCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY++ + A++ +E + L P ++ ++V+G++ S FP Sbjct: 3 KKWYIVNVQTSCENTAKKAIEEKIKSSKMEEFFGEILIPAESVVELVKGQKQTKSRKFFP 62 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFV-RFGASPAIVPSAVIHQLSVYKPKDIVDP---A 108 Y+FV+ + + V+ FV P VP A + +++ P Sbjct: 63 GYIFVQMFLNDETWHLVRNSSKVTGFVGGTKTRPPEVPEAEVLRVTQQMAGVAEKPRPKV 122 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 G+ V + +G F FQ E + + + +L+++ + + + K Sbjct: 123 KFAVGENVTVIDGPFSNFQGTVEEINEDKAKLKVLVSIFGRPTPVELDYIQVEK 176 >UniRef50_B0VGC6 Transcription antitermination protein nusG n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGC6_9BACT Length = 177 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 65/173 (37%), Gaps = 14/173 (8%) Query: 2 QSWYLLYCKRGQLQRAQEH---------LERQAVNCLAPMITLEKIVRGKRTAVSEPLFP 52 WY+++ G + + LE+Q L P+ I GK+ + LF Sbjct: 1 MKWYVIHTYSGHENKVKTAIEKGLAGTPLEKQVGRLLVPVRKTFVIREGKKIERDKKLFT 60 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFG---ASPAIVPSAVIHQ-LSVYKPKDIVDPA 108 +Y+ +E D T I GV+ F+ P + + + L + P + Sbjct: 61 SYVIMEADMTPELKTYILQIAGVTSFLGINKEHKEPIPLSQEEVDRLLGITDPNRDIKVY 120 Query: 109 TPYPGDKVIITEGAFEGFQAIFTE-PDGEARSMLLLNLINKEIKHSVKNTEFR 160 + PGD V + G F F+ I + + + ++ + + + + ++ Sbjct: 121 SYMPGDMVKVISGPFTDFEGIVQKTTENGTKLIIEVTVFGRRTPVELNASQVE 173 >UniRef50_B0SAG6 Transcription antitermination protein nusG n=6 Tax=Leptospira RepID=B0SAG6_LEPBA Length = 184 Score = 102 bits (255), Expect = 4e-21, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 64/175 (36%), Gaps = 16/175 (9%) Query: 2 QSWYLLYCKRGQLQRAQEH---------LERQAVNCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY+L G + + + LE Q + P + + ++ GK+ + L P Sbjct: 7 KKWYVLQTYSGHENKVKTNIEKMVQQQKLEDQIFSVKIPSMEVAEMKNGKKKVTKKKLMP 66 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRF-GASPAIVPSAVIHQL----SVYKPKDIVDP 107 Y+ VE + I VS FV G P + I L + +++ P Sbjct: 67 GYVLVEMNMTDDLRFKIQNLPSVSTFVGGKGKGPEPLSLDEIKNLFSDVGNVESEEVSRP 126 Query: 108 ATPYP-GDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFR 160 + G+ + I +G F F + E + R + + + + + + + Sbjct: 127 RFLFKVGETLKIIDGPFANFTGLVDEIFPDKGRLRVRVEIFGRSTPVELDYLQVK 181 >UniRef50_Q982S4 Transcription antitermination protein nusG n=1 Tax=Mesorhizobium loti RepID=Q982S4_RHILO Length = 182 Score = 101 bits (253), Expect = 6e-21, Method: Composition-based stats. Identities = 36/168 (21%), Positives = 57/168 (33%), Gaps = 9/168 (5%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRT-----AVSEPLFPNYLFVE 58 WY+L + + L V + E RG+R V P FP Y+FV+ Sbjct: 14 WYVLRVEDRADIAVDKLLGEANVERVMLHTECEAKRRGRRKHQSLEPVRVPSFPGYIFVK 73 Query: 59 FDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD----IVDPATPYPGD 114 + GV + P+ V I + D V GD Sbjct: 74 VVSCAATWAGLRTVSGVLGPIGGCDGPSPVSEQEILKFQARIENDPEAIAVLTNALKAGD 133 Query: 115 KVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 KV I G F GF+A+ + + + +++ ++ E KL Sbjct: 134 KVSIDSGPFAGFEAVVLMLGDKHKVHVEVDIFGRKTPIGFALAEVTKL 181 >UniRef50_B2UQY7 Transcription antitermination protein nusG n=2 Tax=Verrucomicrobiaceae RepID=B2UQY7_AKKM8 Length = 189 Score = 101 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 31/180 (17%), Positives = 60/180 (33%), Gaps = 20/180 (11%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY+L+ GQ ++ + R+A P + ++ GK+T LFP Sbjct: 9 EQWYVLHVLSGQENSVRDRIIRKAKDAELSDFIYRVEVPTELISEVRNGKKTERHSKLFP 68 Query: 53 NYLFVEF-------DPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIV 105 Y++ I GV +P + + L + V Sbjct: 69 GYVYANMYLLEADGTLNKDLWYFIQQIDGVISIAGSRNAPLPMRKREVEDLLPLLDAEAV 128 Query: 106 ---DPATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 GD V + EG F+ + E D E + + +++ + ++ + K Sbjct: 129 AARPKVEFAVGDPVRVCEGPFQSQEGTIEEIDPEKGKLRVSVSIFGRATPVDLEYWQVEK 188 >UniRef50_O83264 Transcription antitermination protein nusG n=4 Tax=Treponema RepID=NUSG_TREPA Length = 185 Score = 101 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 61/183 (33%), Gaps = 22/183 (12%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQA----------VNCLAPMITLEKIVRGKRTAVSEPLF 51 + WY+L+ G+ R + + + P L ++ GK+ V F Sbjct: 3 KEWYILHTFSGREARVERAVRMLVEHARIPTNVIFDIKIPEELLTEVKDGKKRVVRRKFF 62 Query: 52 PNYLFVEFDPEVIHTT----TINATRGVSHFVRFGA--SPAIVPSAVIHQL-----SVYK 100 P YL VE D + + GVS F+ P V + ++ + Sbjct: 63 PGYLLVEMDLPEVDWRIVCNEVRRIPGVSGFLGSSGNAKPQAVSADEARRILQKAGEIKG 122 Query: 101 PKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEF 159 + T G +V I EG F F E E + + + + + ++ + Sbjct: 123 DRTPRIAQTFLVGQQVRIVEGPFATFSGEVEEVMSERNKVRVAVTIFGRATPVELELVQV 182 Query: 160 RKL 162 L Sbjct: 183 EAL 185 >UniRef50_Q87A27 Transcription antitermination protein nusG n=71 Tax=Proteobacteria RepID=NUSG_XYLFT Length = 185 Score = 101 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 60/184 (32%), Gaps = 23/184 (12%) Query: 1 MQSWYLLYCKRGQLQRAQEHL----ERQAVN-----CLAPMITLEKIVRGKRTAVSEPLF 51 M+ WY+++ G + + L R + L P + ++ G++ F Sbjct: 1 MKRWYVVHAYSGFEKSVAQALRDRISRIEIQDRFGDVLVPAEEVVEMRSGQKRRSEHKFF 60 Query: 52 PNYLFVEFD---------PEVIHTTTINATRGVSHFV-RFGASPAIVPSAVIHQLSVYKP 101 P Y+ ++ + + + T V F+ P + S + Sbjct: 61 PGYVLIQIETYYEGGVPRIDNECWHLVKETPKVMGFIGGTADRPLPISSDEADVILRRVQ 120 Query: 102 KDIVDP---ATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNT 157 P PG V + +G F F + E + E R + + + + + Sbjct: 121 DGAEKPRPKVLFEPGQMVRVIDGPFNDFDGLVEEVNYEKNRLRVAVLIFGRPTPVDLDFG 180 Query: 158 EFRK 161 + +K Sbjct: 181 QVQK 184 >UniRef50_B2CBC8 Transcription antiterminator n=2 Tax=Enterobacteriaceae RepID=B2CBC8_KLEPN Length = 151 Score = 101 bits (252), Expect = 9e-21, Method: Composition-based stats. Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 2/98 (2%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKR--TAVSEPLFPNYLFVE 58 M WY+LYC ++R +E V P + R + LFPNYLF+ Sbjct: 1 MYEWYVLYCNNQDVERITRRVEGLDVEVFCPRYIKVTPRKDCRAVRQEEKVLFPNYLFLC 60 Query: 59 FDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL 96 FD + HT+TI + G FV FG++P VP +VI + Sbjct: 61 FDVNITHTSTITSIPGAHGFVSFGSTPCTVPKSVITAI 98 >UniRef50_Q14PQ9 Transcription antitermination protein nusG n=1 Tax=Spiroplasma citri RepID=Q14PQ9_SPICI Length = 217 Score = 101 bits (252), Expect = 9e-21, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 58/185 (31%), Gaps = 25/185 (13%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY++ C G R ++ L ++ + T+ GK + L+P Sbjct: 32 KWYVINCYSGHEDRVRDDLIQRVESLNMKDVVFDIRVIKETVSAKKGGKLIEKEKNLYPG 91 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRF---GASPAIVPSAVIHQL------------SV 98 Y+F+ + T GV+ F+ G P + + Sbjct: 92 YIFINMIMNDEAWYIVRNTTGVTGFIGSSGRGTKPFPLTDQEARTMLSKTLAAKKTATKQ 151 Query: 99 YKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARS-MLLLNLINKEIKHSVKNT 157 K V A D V I G F + T+ D ++ L + + V+ Sbjct: 152 GKKVKKVFVANFEVNDYVRILSGTFTEMEGQVTKIDTSKGIAIVNLEMFGRLTPTEVEFD 211 Query: 158 EFRKL 162 + K+ Sbjct: 212 QCEKI 216 >UniRef50_Q7UWN7 Probable NusG-like protein-putative transcription activator n=1 Tax=Rhodopirellula baltica RepID=Q7UWN7_RHOBA Length = 184 Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 63/165 (38%), Gaps = 13/165 (7%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLE-KIVRGKRTAVSEPLFPNYLFVEFDPE 62 W+LLY K Q + L V APM+ + G+ PLF Y+F+ D + Sbjct: 26 WWLLYTKSRQEKAVIRKLRDAGVPHYAPMVKQRFRSPAGRMRESFVPLFSTYVFLRGDDQ 85 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLS-----VYKPKDIVDPATPYPGDKVI 117 + + V + VP +I L + + + PG+ V Sbjct: 86 ARYEAI------CTGSVLKASEIVQVPD-LIEDLQQIRSLIVMGVPLTIESQLQPGEHVR 138 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 + G F G++ + E R ++ + + + + +++ + K+ Sbjct: 139 VKNGTFAGYEGTVIRRENETRLLVFVRFMEQGVSVKLEDCQLEKI 183 >UniRef50_O51355 Transcription antitermination protein nusG n=22 Tax=Borrelia RepID=NUSG_BORBU Length = 184 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 33/182 (18%), Positives = 70/182 (38%), Gaps = 21/182 (11%) Query: 2 QSWYLLYCKRGQLQRAQEH---LERQAV------NCLAPMITLEKIVRGKRTAVSEPLFP 52 ++WY++ ++ ++ L + V + AP+ +E+I GK+ ++P Sbjct: 3 RAWYVVQTYSQYEKKIEQDIRLLINEGVFGGVVLDVKAPIEKVEEIRNGKKRIRERKIWP 62 Query: 53 NYLFVEFDPEVIHT----TTINATRGVSHFVRF--GASPAIVPSAVIHQL-----SVYKP 101 Y+ +E D + I +GV +FV G P + + + + Sbjct: 63 GYILIELDLPEVGWKDIIANIIKVQGVINFVGVSKGQRPIPINDEEVKSVFMLTGEIKAN 122 Query: 102 KDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFR 160 K I G++V I G F+ F+ + + D E + + + + + V Sbjct: 123 KSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQHIE 182 Query: 161 KL 162 K+ Sbjct: 183 KI 184 >UniRef50_D2R5P4 NusG antitermination factor n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5P4_9PLAN Length = 267 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 30/177 (16%), Positives = 66/177 (37%), Gaps = 17/177 (9%) Query: 3 SWYLLYCKRGQLQRAQEHLERQ----AVNCL-----APMITLEK-IVRGKRTAVSEPLFP 52 WY+L + + + L R+ + P + + GKR V + ++P Sbjct: 91 EWYILKVQVNREDSIKASLLRRINMNGLERFFKDVVVPTEDVAEFTKTGKRRVVKKKIYP 150 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL-----SVYKPKDIVDP 107 Y+ V + T G+ F P + + ++ + + + V Sbjct: 151 GYILVNMVFNDETWFIVRETSGIGDFTGAMGKPTPMDPKDVERILRSSKMLEEDTNQVRT 210 Query: 108 ATPYP-GDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRKL 162 A P+ GD+V + EG F+ F+ D R +++N+ + +++ + + Sbjct: 211 AIPFKVGDRVRVKEGYFQNFEGDIDGIDQANGRVTVMINIFGRSTPVELEHWQIEAV 267 >UniRef50_B0ZDY9 ActX n=5 Tax=Enterobacteriaceae RepID=B0ZDY9_ECOLX Length = 172 Score = 99.9 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 59/162 (36%), Gaps = 13/162 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGK--RTAVSEPLFPNYLFVEF 59 + +YLL C Q L R + P+I R P+FP Y+FV Sbjct: 5 KQFYLLQCSPHFHQSVLLQLSRSGIAYYNPVIRTFYKRRDCSAYRGQIMPMFPGYVFVLL 64 Query: 60 DPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIIT 119 D EV+H + + V V FG PA VP +VI+++ + ++ + I Sbjct: 65 DFEVVHPSCFTRMKNVYGLVSFGEYPAEVPLSVINEVKEQEKIFSMNLSLMNNSCLAKI- 123 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 D R + + + +KN +++ Sbjct: 124 ----------LLLADASKRGQVFADYVCNRKYDRLKNDSYKR 155 >UniRef50_Q1VSS9 Transcription activator or transcription antitermination factor n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=Q1VSS9_9FLAO Length = 159 Score = 99.1 bits (246), Expect = 4e-20, Method: Composition-based stats. Identities = 27/149 (18%), Positives = 56/149 (37%), Gaps = 6/149 (4%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + W++LY K ++ E L R + P T ++ ++ V P+ P+ L V+ Sbjct: 7 KKWFVLYTKPRGEKKLSEQLNRSGIEAYCPTRTEVRVWSDRKKKVEMPVLPSMLLVKI-- 64 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK---DIVDPATPYPGDKVII 118 E + ++ + P++V + L + + PG K+ + Sbjct: 65 ENKQRAKALESPLAIRYLFWNGKPSVVTQVEVDTLRSILGDSKFESHELDQLRPGQKLDM 124 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLIN 147 TE FE + + + ++L I Sbjct: 125 TELGFENIEGTVQYVNKKE-CWVVLQGIG 152 >UniRef50_A7BC06 Transcription antitermination protein nusG n=2 Tax=Actinomyces RepID=A7BC06_9ACTO Length = 256 Score = 98.7 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 34/183 (18%), Positives = 66/183 (36%), Gaps = 23/183 (12%) Query: 3 SWYLLYCKRGQLQRAQEHLER----QAVNCL-----APMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G ++ + +LE+ Q + P + + + V P Sbjct: 72 DWYVIHTYSGHERKVKANLEQRITTQNMEDYIFAVEVPDEYVMEYRGNAKKRVRHVRIPG 131 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVP-SAVIHQLSVYKPKDIVDPATPYP 112 Y V D + T V+ FV +P + V+ L+ ++ + A P Sbjct: 132 YAIVCMDFNEASYRVVKETPAVTGFVGDQHNPVPLSIDEVVMLLTPNVLEEAAEAAKDQP 191 Query: 113 ------------GDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEF 159 G+ V +T+G FE A +E E + +L+ + +E + + Sbjct: 192 APVQAVQTQFEVGEIVTVTDGPFETMSATISEIMPEAQKLKVLVTIFERETPLELGFDQV 251 Query: 160 RKL 162 KL Sbjct: 252 EKL 254 >UniRef50_D1AXH4 NusG antitermination factor n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AXH4_STRM9 Length = 190 Score = 98.7 bits (245), Expect = 6e-20, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 68/185 (36%), Gaps = 28/185 (15%) Query: 1 MQSWYLLYCKRGQLQRAQEHLER---------QAVNCLAPMITLEKIVRGKRTAVSEPLF 51 ++ WY+++ G ++ + LE+ + L P + + +GK V +F Sbjct: 9 VKKWYIIHTYSGYEKKVKTDLEKRIMSEDLNDKVFRILVPEEKIFEEKKGKMVPVFRKIF 68 Query: 52 PNYLFVEF-------------DPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL-S 97 P+Y+ VE + I T GV+ FV G+ P + + ++ S Sbjct: 69 PSYVLVEMLAFRDVTEDSVSYRVDSRAWYIIRNTNGVTGFVGVGSDPLPMDEKEVEEIFS 128 Query: 98 VYKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDG-EARSMLLLNLINKEIKHSVKN 156 +D + GD V +G + D + +++ + ++ ++ Sbjct: 129 KMSNEDFQEKLEYEVGDYVKTLDG----IEGTVEHIDYIAKQIKIVIQVGSRPTTLTLGL 184 Query: 157 TEFRK 161 E K Sbjct: 185 NEVTK 189 >UniRef50_Q1Q133 Transcription antitermination protein nusG n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q133_9BACT Length = 182 Score = 98.3 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 19/180 (10%) Query: 2 QSWYLLYCKRGQLQRAQEHL----ERQAVN-----CLAPMITLEKIVRGKRTAVSEPLFP 52 + W++L + + + +++L Q + L P + ++ GK+ ++P Sbjct: 3 KEWFVLRVQSNREDKVRDNLVERIRAQGMESLITNVLVPSEKISEVKGGKKRVSDRKIYP 62 Query: 53 NYLFVEFDPEV------IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSV---YKPKD 103 Y+ VE + + TI T G F+ + P + + +L K + Sbjct: 63 GYIMVEIEVDEKGQIPKEVWFTIRETSGTGEFIGGQSKPVPMTKYEVEKLLSDLDQKEER 122 Query: 104 IVDPATPYPGDKVIITEGAFEGFQAIFTEPDG-EARSMLLLNLINKEIKHSVKNTEFRKL 162 G+KV I EG FE + I E R ++L + + ++ + + Sbjct: 123 PRAKIEFNEGEKVRIKEGPFENYDGIVEEVLPASGRVKVMLTVFGRATPVELEYWQVESI 182 >UniRef50_Q5GRY4 Transcription antitermination protein nusG n=8 Tax=Wolbachia RepID=Q5GRY4_WOLTR Length = 278 Score = 97.9 bits (243), Expect = 1e-19, Method: Composition-based stats. Identities = 35/178 (19%), Positives = 72/178 (40%), Gaps = 17/178 (9%) Query: 2 QSWYLLYCKRGQLQRAQEH-LE---RQAV-----NCLAPMITLEKI-VRGKRTAVSEPLF 51 WY+L ++ +H LE R V P L ++ +R K+ A+ F Sbjct: 99 YKWYILRVASNYEEKVCQHVLENSMRLGVNDYFKEVFIPYEELSEVELRSKKAAMRRKCF 158 Query: 52 PNYLFVEFDPEVIHTTTINATRG---VSHFVRFGASPAIVPSAVIHQLS--VYKPKDIVD 106 P Y+F+ D +N V F++ G+ P ++ I+ + +Y ++ Sbjct: 159 PGYVFLYVDLCDEVLNFVNNIPKSLKVYGFLKNGSVPKVISDDEIYSMCNALYNAQETKK 218 Query: 107 PA-TPYPGDKVIITEGAFEGFQAIFTEPDGEARSM-LLLNLINKEIKHSVKNTEFRKL 162 + G+KV I +G F+ F + E + + + ++++ K + + K+ Sbjct: 219 LSHGYEKGEKVKINDGLFQNFTGKVDMINDEKKIINIEVSILGKPTIIELDLAQVEKI 276 >UniRef50_C7PUF8 Transcription antitermination protein nusG n=4 Tax=Bacteroidetes RepID=C7PUF8_CHIPD Length = 196 Score = 97.6 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 70/176 (39%), Gaps = 16/176 (9%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+L G+ ++ +E+L+ + P+ + K+ GK+ + +P Sbjct: 20 KWYVLRVVSGKEKKVKEYLDIEVRRSDWGNVITQIFLPVEKVYKVQAGKKVMREKNFYPG 79 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGA--SPAIVPSAVIHQLSVY---KPKDIVDPA 108 Y+ +E + I + R VS + F P + A ++++ + + + Sbjct: 80 YVMIEAIDGKMTDEVIQSIRNVSGVIHFLGKDKPIALRKAEVNKMLGKVDEMSDNGLTMS 139 Query: 109 TPY-PGDKVIITEGAFEGFQAIFTE-PDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 P+ G+ + I +G F F I E + + + + + + + + + K+ Sbjct: 140 EPFIVGETIKIIDGPFNDFNGIIEEVIEDKKKLKVTVKIFGRATPVELNFMQVEKI 195 >UniRef50_B0K4N5 Transcription antitermination protein nusG n=9 Tax=Thermoanaerobacter RepID=B0K4N5_THEPX Length = 179 Score = 97.6 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 35/136 (25%), Positives = 68/136 (50%), Gaps = 9/136 (6%) Query: 1 MQSWYLLYCKRGQLQRAQEHLE---RQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFV 57 M+ WY+++ + G + ++ +E ++ V L P + + V+G+ + LFP Y+FV Sbjct: 1 MKKWYVIFTRSGYENKVRDIIENCFKEEVKLLIPKRKIIERVKGQPVEKIKLLFPGYVFV 60 Query: 58 EFDPEVIHTTTINAT--RGVSHFVRFGASPAIVPSAVIH-QLSVYKPKDIVDPAT-PYPG 113 + I+ RG+ F++ G PA V + LS+ K D++D + G Sbjct: 61 NAEMSDDLYYKISEVLKRGI--FLKEGKRPAFVKEEEMKIILSLTKNSDLIDLSKGIMEG 118 Query: 114 DKVIITEGAFEGFQAI 129 ++V I EG +G++ + Sbjct: 119 ERVKIIEGPLKGYEGL 134 >UniRef50_UPI000197AEF0 hypothetical protein BACCOPRO_00694 n=1 Tax=Bacteroides coprophilus DSM 18228 RepID=UPI000197AEF0 Length = 175 Score = 97.2 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 27/152 (17%), Positives = 59/152 (38%), Gaps = 7/152 (4%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 ++WY +Y + ++ E L + V P+ + + +R + + P +F+ Sbjct: 4 ENWYAMYVRMHHEKKVAEKLGQMGVEHYLPVQEVVRQWSDRRKKLQVVVIPMMIFIRAS- 62 Query: 62 EVIHTTTINATRGVSHFV--RFGASPAIVPSAVIH----QLSVYKPKDIVDPATPYPGDK 115 E + + + VS + R PA++ + L + PG K Sbjct: 63 EQVRLSVMRNIPSVSGCLIDRCTHRPAVIRDEEMQRFRFMLDYSEEAVHFINTPLAPGQK 122 Query: 116 VIITEGAFEGFQAIFTEPDGEARSMLLLNLIN 147 + + +G G TE DG+++ M+ + + Sbjct: 123 IRVIKGPLAGLDGELTEIDGKSQVMVRIEQLG 154 >UniRef50_C3MAS1 Putative uncharacterized protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3MAS1_RHISN Length = 169 Score = 97.2 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 60/170 (35%), Gaps = 10/170 (5%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSE--PLFPNYLFVE 58 M WY++ + GQ Q+A E V PM+ E + + + PLF Y+F Sbjct: 1 MGHWYVVRTRAGQQQKATREFEDNGVTVYCPMLRRETRHFQSKKWLMKECPLFTGYVFAY 60 Query: 59 FDPEVIHTTTINATRGVSHFVR-FGASPAIVPSAVIHQLSVYKPKDIVDPATP-----YP 112 + T+ R V + G +P V ++ + + + D P Sbjct: 61 L--RISDFGTLREMRHVLSVLADAGGTPIPVAGNIVEDIRDAQERGDFDVLRPPVRRLKA 118 Query: 113 GDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 GD V + +G G A T G + + + + R++ Sbjct: 119 GDTVQVKDGPLTGHYAAVTNIVGRRAIKAFVEIFGSLREVEIGLESIRRV 168 >UniRef50_C6PET8 Transcription antitermination protein nusG n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PET8_CLOTS Length = 187 Score = 97.2 bits (241), Expect = 2e-19, Method: Composition-based stats. Identities = 38/171 (22%), Positives = 68/171 (39%), Gaps = 10/171 (5%) Query: 2 QSWYLLYCKRGQLQRAQE-------HLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNY 54 + WY++Y + G + + L ++ + L P + + KR + LFP Y Sbjct: 5 EKWYVIYTRTGDELKVKRLIELLFSKLNKKPIRVLIPKRAIIERKGKKRVEKIKFLFPGY 64 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIH-QLSVYKPKDIVDPATPYP- 112 +F++ + I+ F++ PA V I LS+ DIV +T Sbjct: 65 VFIKTNMCFEIYYEISKLPHFLKFLKDEMEPAEVRDDEIRIILSLVGDSDIVGFSTGIKI 124 Query: 113 GDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRKL 162 G KV I +G +GF+ + + D R + LN+ + K+ Sbjct: 125 GGKVKIIDGPLKGFEGLIEKIDKRKGRVKVRLNVSGNANLVDLGIHIVEKI 175 >UniRef50_B0SHW0 Transcription antiterminator n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SHW0_LEPBA Length = 179 Score = 96.0 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 29/146 (19%), Positives = 52/146 (35%), Gaps = 6/146 (4%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 +WY++Y K ++ E L + + P+ K + + P+ P+Y+FV Sbjct: 12 AWYIVYTKPRAEKKLSELLRKYHIENYLPIRKERKKWTDRFKWIHVPVLPSYIFVRIVFW 71 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVP----SAVIHQLSVYKPKDIVDPA-TPYPGDKVI 117 + G FV PAIV + L Y ++P G V Sbjct: 72 -RDKNKVLQLPGSVQFVFHKGQPAIVEQNDLDVLEKGLQEYAESLKMNPELLLQKGKLVR 130 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLL 143 I +G+F G + + + + Sbjct: 131 IIDGSFVGKTMEIIKVKNKTLVVCRI 156 >UniRef50_C3M8G1 Transcriptional activator affecting biosynthesis, assembly and export of lipopolysaccharide core, F pilin, and hemolysin n=2 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C3M8G1_HAMD5 Length = 149 Score = 95.6 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 42/137 (30%), Positives = 62/137 (45%), Gaps = 5/137 (3%) Query: 2 QSWYLLYCKRG--QLQRAQEHLERQAVNCLAPMITLEKIVRGKR--TAVSEPLFPNYLFV 57 + WYL K G L +AQ+ L + V+ L+P I + ++ AV EPLF YLF Sbjct: 3 KKWYLTCHKSGCSNLYKAQQALIQIEVHSLSPSIQTWRQRLDRKNKRAVIEPLFKGYLFT 62 Query: 58 EFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVI 117 FDPE I T I G+SH VRF + + AV+ ++ + P + D Sbjct: 63 CFDPEKIPTRKIEHCAGISHLVRFANTIVPIREAVMQEI-MRFPLCMNDETRTNHKITTS 121 Query: 118 ITEGAFEGFQAIFTEPD 134 + E E + I + Sbjct: 122 LKESQKEQIKNIVQKKR 138 >UniRef50_A8T9L1 Putative uncharacterized protein n=1 Tax=Vibrio sp. AND4 RepID=A8T9L1_9VIBR Length = 152 Score = 95.3 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 29/106 (27%), Positives = 49/106 (46%), Gaps = 5/106 (4%) Query: 1 MQSWYLLYCKRGQLQR--AQEHLERQAVNCLAPMITL---EKIVRGKRTAVSEPLFPNYL 55 M++WYL+YC +R L V P++T K GK ++ LF NY+ Sbjct: 1 MKNWYLVYCNVKNSRRDVLIRFLNSFGVEVFNPIMTYYKARKDRPGKFRKQTKSLFSNYM 60 Query: 56 FVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKP 101 F++FD + + G+S+F+R A +P +I L + + Sbjct: 61 FIQFDCTKFSFSKFDNIEGISYFLRSSGQIATIPEPLIENLRLSQA 106 >UniRef50_B8IE36 NusG antitermination factor n=3 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IE36_METNO Length = 196 Score = 94.9 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 39/154 (25%), Positives = 54/154 (35%), Gaps = 4/154 (2%) Query: 5 YLLYCKRGQLQRAQEHLERQAVNCLAP-MITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 Y RA E L++ LAP + + + V P+FP Y FV PE Sbjct: 37 YAASVAGHGEYRACEWLQQAGFATLAPGRTAVVRQASSGKRLVRRPVFPGYAFVGKRPEQ 96 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY--PGDKVIITEG 121 I GV V G +P +P ++ L D P GDKV I + Sbjct: 97 -SWRDILRVPGVRALVTTGEAPTELPPWMMKMLIAADEMGAYDRPRPQLAVGDKVRIRDE 155 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVK 155 ++G R +LL K+ SV Sbjct: 156 LWQGLIGEVMRAPEGRRIAVLLKAFGKKHVLSVD 189 >UniRef50_D0I9V3 Putative uncharacterized protein n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I9V3_VIBHO Length = 171 Score = 94.5 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 32/157 (20%), Positives = 60/157 (38%), Gaps = 5/157 (3%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 WY +Y + + ++ L + P L + + +R EPLF +LFV P Sbjct: 4 YRWYAVYTHFNEEKVLRDELLAKGYEVYLPERKLWETLGNRRRVTYEPLFKCHLFVRTTP 63 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSV---YKPKDIVDPATPYPGDKVII 118 E + + +G SH VR+G A + + I ++ Y + G V + Sbjct: 64 EGLK--NVKQAQGFSHLVRYGKYVATISESHIIKIKTILYYYEDATSVSNSNVEGLAVAV 121 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVK 155 G +G + +GE + + + + +V Sbjct: 122 VNGPLKGMIGVLPAGEGERPIAMEIGQLGYSVNVTVP 158 >UniRef50_Q3SSD1 Transcription antitermination protein nusG n=1 Tax=Nitrobacter winogradskyi Nb-255 RepID=Q3SSD1_NITWN Length = 234 Score = 94.1 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 62/182 (34%), Gaps = 28/182 (15%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMI----TLEKIVRGK------RTAVSEPLF 51 + W++L G ++ ER+ ++ P+I + + V G + V PLF Sbjct: 33 KYWFILRTHPGCERKVMREFERRNISAYCPLIAKQQRVVRRVHGSSWTYEIKRLVQVPLF 92 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSA------------VIHQLSVY 99 P +FV GVS ++RFG A +PS IH L Sbjct: 93 PQLVFV-----PDFERVPADIGGVSGWLRFGGWRARIPSEREATSDRVACMADIHALVAI 147 Query: 100 KPKDIVDPATPYP-GDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTE 158 A + G V I +G F F D + R + + + + + + Sbjct: 148 ANTPQSKRAARFEIGALVRIVDGPFRDFSGRIERLDSKGRLKVAIEIFGRLSPTEMSEAQ 207 Query: 159 FR 160 Sbjct: 208 IE 209 >UniRef50_B3ETZ5 Transcription antitermination protein nusG n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ETZ5_AMOA5 Length = 186 Score = 94.1 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 62/180 (34%), Gaps = 20/180 (11%) Query: 3 SWYLLYCKRGQLQRAQEHL----ERQAVN-----CLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+L GQ + + HL ER+ + L P + ++ GKR FP Sbjct: 6 KWYVLKVVSGQEKFVKYHLDSELERRKLQDYVAQILIPSEKIYEMRAGKRQTRERNFFPG 65 Query: 54 YLFVEFDPEVIH-TTTINATRGVSHFVR-----FGASPAIVPSAVIHQLSVY----KPKD 103 YL + D TI F+ + P + I+++ D Sbjct: 66 YLILHADLSDGRVLHTIKDIPNALGFLGVRGWSSSSQPIPLREKEINKILGRVDEIAEDD 125 Query: 104 IVDPATPYPGDKVIITEGAFEGFQAIFTEP-DGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G+ V I +G F GF E + + +++ + + + T+ K+ Sbjct: 126 NGLEKPFIVGETVKIVDGPFSGFTGNIQEVFEERKKLNVIVKIFERNTPIELTYTQVEKI 185 >UniRef50_B8I511 NusG antitermination factor n=6 Tax=Clostridium RepID=B8I511_CLOCE Length = 188 Score = 93.3 bits (231), Expect = 2e-18, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 68/171 (39%), Gaps = 12/171 (7%) Query: 4 WYLLYCKRGQLQRAQEHLERQA----VNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEF 59 WY+L+ K G+ R +++L++ +N P+ + G +PLFP Y+F+E Sbjct: 17 WYVLFVKSGREHRVEQYLKKIVGIDMINPFIPLHEFLFKISGTVKRELKPLFPGYVFIES 76 Query: 60 DPEVIHT-----TTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT--PYP 112 D I + +++ + V + L + ++ Sbjct: 77 DMAGQEFIRKLYNKIYLLSDIVRILKYSDTEIAVRDSEKQMLLDLCNNEHCIESSRGVIK 136 Query: 113 GDKVIITEGAFEGFQAIFTEPDGEAR-SMLLLNLINKEIKHSVKNTEFRKL 162 GD++ IT G G ++I + + R +++ + + + SV K+ Sbjct: 137 GDRIYITNGPLRGRESIIKKVNRHKRQALVEMEFMGDKRLVSVALEIVEKV 187 >UniRef50_Q7D1F8 Transcription antitermination protein n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=Q7D1F8_AGRT5 Length = 188 Score = 92.9 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 61/175 (34%), Gaps = 15/175 (8%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITL-EKIVRGKRT-AVSEPLFPNYLFVEFD 60 W+++ K + ++ L + V P+ T+ E +VRG+ AVS PL P Y+ V Sbjct: 14 EWFVVETKHKAEKAVEDALRKAGVKVFLPLETIGETVVRGRIIPAVSRPLLPGYVLVNIV 73 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDP----ATPYPGDKV 116 I GV+ FV P V +++ + + GDKV Sbjct: 74 YSPAAVCGIARLEGVAGFVGGMVHPHRVSDEEMNRFKAFGDDETAPDVKHCEQFKRGDKV 133 Query: 117 IITEGAFEGFQAIFTEPDGE-----ARS----MLLLNLINKEIKHSVKNTEFRKL 162 G F F + + R ++ +++ K +L Sbjct: 134 RFVLGPFASFGGNILKLRKDRAVDGERVATGAVVAVDVFGKVSTIEAPLALLEQL 188 >UniRef50_D0XNC5 NusG antitermination factor n=1 Tax=Brevundimonas subvibrioides ATCC 15264 RepID=D0XNC5_9CAUL Length = 188 Score = 92.6 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 67/171 (39%), Gaps = 21/171 (12%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLE---KIVRGKRTAVSEPLFPNYLFVEFD 60 W+++ Q + A+ LERQ PM+ ++ G +V P+ P YLFV+ D Sbjct: 15 WFVVITHVNQEKLAKYQLERQGHAVYMPMVPPSPRARMRNGVPPSV-RPMIPRYLFVQVD 73 Query: 61 PEVIHTTTINATRGVSHFVRF----GASPAIVPSAVIHQLSVYKPKDIVDP--------- 107 + I +T GVS + G P +P+ I ++ + +V Sbjct: 74 LDQPGWPAIYSTFGVSEVISSGTGEGRRPRAIPTRFIEEIRAREVNGLVILPEARKAGPA 133 Query: 108 ---ATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVK 155 GDK+ G ++ +F + R+ ++ L+ + + + Sbjct: 134 PVACRFKKGDKLR-WHGPTADYEVVFQQMVDGNRAEVVFTLMGVDSRQVIS 183 >UniRef50_B5Y935 Transcription antitermination protein nusG n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y935_COPPD Length = 182 Score = 92.6 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 33/180 (18%), Positives = 70/180 (38%), Gaps = 19/180 (10%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVN--------CLAPM--ITLEKIVRGKRTAVSEPL 50 M+ WY++ G+ E ++ +A N L P + + + V + Sbjct: 1 MKKWYIVTTVHGKESAVAEAIKLRAENAGNTAISDVLVPKEWRLEYRGKKPRPERVQRVI 60 Query: 51 FPNYLFVEFD-------PEVIHTTTINATRGVSHFVRF-GASPAIVPSAVIHQLSVYKPK 102 +P Y+FVE + + + I T GV F+ +P V + ++ + Sbjct: 61 YPGYVFVEVEVDPEKGVIDPETWSLIRYTPGVRGFISTPDHTPIPVQDNEMEKVLQKSRE 120 Query: 103 DIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 GD+V + +GA +G + + D E + + +++ +E+ + + RK Sbjct: 121 QEAVKVDLQTGDEVEVRDGALKGLTGVVVDVDHEKQKVFVKISMFGREVISDLDAVQVRK 180 >UniRef50_A6L3Q7 Putative transcriptional regulator UpxY-like protein n=57 Tax=Bacteroides RepID=A6L3Q7_BACV8 Length = 166 Score = 92.2 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 26/153 (16%), Positives = 64/153 (41%), Gaps = 8/153 (5%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M+ W + Y + ++ E L + P+ + ++ + + P +FV D Sbjct: 1 MKKWLVAYVRLHHEKKTAERLTAMNIENFLPVQEEIRQWTYRKKKIKRVVIPMMIFVHVD 60 Query: 61 PEVIHTTTINATRGVSHF--VRFGASPAIVPSAVIHQLS--VYKPKDIVDP--ATPYPGD 114 + + +S + + +PA++P + + + + V+ A PG+ Sbjct: 61 AAE--RSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCTAPLAPGE 118 Query: 115 KVIITEGAFEGFQAIFTEPDGEARSMLLLNLIN 147 + + +G +G + E DG+A+ ++ L+L+ Sbjct: 119 LIRVVKGPLKGLEGELVEVDGKAKVVVRLDLLG 151 >UniRef50_B9KHV6 Transcription antitermination protein nusG n=10 Tax=Anaplasmataceae RepID=B9KHV6_ANAMF Length = 188 Score = 92.2 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 26/176 (14%), Positives = 67/176 (38%), Gaps = 16/176 (9%) Query: 3 SWYLLYCKRGQLQRAQEHL----ERQAV-----NCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY++ G ++ + + ++ + P + K+ K+ A+ L P Sbjct: 11 EWYIVQVSSGSEEKVAQMILERSQQLGMSGVFSEVFIPYEEVTKVKYNKKVAMRRKLSPG 70 Query: 54 YLFVEFDPEVIHTTTINATRGVSHF-VRFGASPAIVPSAVIHQL-----SVYKPKDIVDP 107 Y+F+ + VS+F + P ++P++ + + + + Sbjct: 71 YVFLYMRLSDDAINFVRRVPKVSNFLLDDAGLPKVIPASEMETMRSSMCRAVSSEAASEV 130 Query: 108 ATPYPGDKVIITEGAFEGFQAIFTEPDGEARSM-LLLNLINKEIKHSVKNTEFRKL 162 + GD+V+I +G F+ F + + + + + + + K K + +K+ Sbjct: 131 CSFEVGDEVVINDGLFQDFNGRVEYVNEDKKVAGVSVMIFGRLTKIEFKLSSIQKV 186 >UniRef50_C8VZE8 Transcription antitermination protein nusG n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VZE8_DESAS Length = 164 Score = 92.2 bits (228), Expect = 5e-18, Method: Composition-based stats. Identities = 25/161 (15%), Positives = 63/161 (39%), Gaps = 3/161 (1%) Query: 4 WYLLYCKRGQLQRAQEHLERQAV-NCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 WY+++C G + + ++ + + + P + + +G V +FP Y+FV+ Sbjct: 3 WYVIHCLTGHEEDVRSRVKEKDIARAVVPRRLMVERRQGGWQYVERVVFPGYVFVQAHMT 62 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY-PGDKVIITEG 121 + GV + ++ + V L + + D + + + G V + G Sbjct: 63 PAAYYAMRNLPGVIRVLGTSRPVPLMGNEVTLFLKLCRDGDPLGLSEVFVKGGSVKVISG 122 Query: 122 AFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 G + + D R+ + ++L+ + + + +K Sbjct: 123 PLMGLEGHIVKLDARRFRAKVNISLMGEPRIVELAVSVIKK 163 >UniRef50_Q2S1Q0 Transcription antitermination protein nusG n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S1Q0_SALRD Length = 185 Score = 90.6 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 58/173 (33%), Gaps = 16/173 (9%) Query: 4 WYLLYCKRGQLQRAQEHLE---------RQAVNCLAPMITLEKIVRGKRTAVSEPLFPNY 54 WY+L ++ + +LE Q L P T+ ++ G++ + FP Y Sbjct: 10 WYVLRTFSNHEKKVRRYLESEIERIGLEDQVEEILIPTETVFEMKGGEKKTKEKTFFPGY 69 Query: 55 LFVEFDPEVIHTTTINATRGVSHFV--RFGASPAIVPSAVIHQLSVYKPK----DIVDPA 108 + + V F+ G P + I ++ + Sbjct: 70 ILLNCTLTSDLRDLAEDLPSVIGFLTTGTGDEPTQLREEEIKRILGKMDRAEEMGEQPEM 129 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFR 160 GD V + +G F+ F I + + + +++++ ++ + + Sbjct: 130 PFKVGDPVKVVDGPFDSFNGIVEDVYPDQMKVKVMVSIFGRKTPVELDYLQVE 182 >UniRef50_Q7UMY8 Transcription antitermination protein nusG n=1 Tax=Rhodopirellula baltica RepID=Q7UMY8_RHOBA Length = 225 Score = 90.6 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 55/178 (30%), Gaps = 17/178 (9%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAV---------NCLAPMITL-EKIVRGKRTAVSEPLF 51 WY+L + E L ++ + + P + GKR L Sbjct: 48 MDWYILKVAFNREDSIAEALRKKVRMEDMGEYFGDIVVPSEDVATFTRDGKRRVSKRKLL 107 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA--- 108 P Y+ V + G+S F P + + + D D Sbjct: 108 PGYIMVYMSINDDTWFLVREVGGISDFTGSAGKPQPMEPEDVERFINRPAVDDEDETPIK 167 Query: 109 ---TPYPGDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRKL 162 GD+V + EG FE + D R +++N+ + + + + + L Sbjct: 168 TAIPFKVGDRVRVKEGNFENQEGEVDVVDEANGRVTVIINIFGRSVPMELDHWQVEPL 225 >UniRef50_P29397 Transcription antitermination protein nusG n=12 Tax=Bacteria RepID=NUSG_THEMA Length = 353 Score = 89.1 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 43/128 (33%), Gaps = 9/128 (7%) Query: 44 TAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD 103 LFP Y+FVE + + V FV G P V + + + Sbjct: 225 KTKRRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGLE 284 Query: 104 IVDPAT--------PYPGDKVIITEGAFEGFQAIFTEPDGEAR-SMLLLNLINKEIKHSV 154 + GD V I G FE F + E D E + + + + +E + Sbjct: 285 EYEEKKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVVL 344 Query: 155 KNTEFRKL 162 +E K+ Sbjct: 345 HVSEVEKI 352 >UniRef50_C4XFX3 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XFX3_MYCFE Length = 205 Score = 88.7 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 66/191 (34%), Gaps = 33/191 (17%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAV-----NCLA--------------PMITLEKIVRGK- 42 WY++ G+ + E L+ + + +C P +T +++ + K Sbjct: 10 QWYMISTVSGKEDKVVEALKNRIISEQVEDCFNHEATPEGAFKIFKKPTLTPKELEKQKN 69 Query: 43 ---RTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRF---GASPAIVPSAVIH-- 94 ++ Y+F+ D + T+ V+ + GA P V I Sbjct: 70 GEEYKVKYVNMYSGYIFINMDMTDRAWFIVRNTQYVTGLIGSSGRGAKPTPVSQHQIDKS 129 Query: 95 ---QLSVYKP-KDIVDPATPYPGDKVIITEGAFEGFQAIFTE-PDGEARSMLLLNLINKE 149 ++ + + V G+ V I +G F+G Q E + + + + + K+ Sbjct: 130 FKKEIKLQEDFDKGVTHTKFQIGEIVEIIDGPFKGEQGRVLECSEANKKVTVEIEYLGKK 189 Query: 150 IKHSVKNTEFR 160 + E + Sbjct: 190 TPADFEYKEIK 200 >UniRef50_O84322 Transcription antitermination protein nusG n=14 Tax=Chlamydiales RepID=NUSG_CHLTR Length = 182 Score = 87.5 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 30/165 (18%), Positives = 68/165 (41%), Gaps = 14/165 (8%) Query: 1 MQSWYLLYCKRGQLQRAQEHLER----QAV-----NCLAPMITLEKIVRGKRTAVSEPLF 51 M WY++ Q ++ ++ LE + + P + ++ +G+ V + ++ Sbjct: 1 MFKWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIW 60 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSV---YKPKDIVDPA 108 P YL V+ + + T+GV F+ G +P + + + K +V Sbjct: 61 PGYLLVKMHLTDESWSYVKKTQGVVEFLG-GGAPVALSEEEVKNILADLEEKKSGVVQKH 119 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKH 152 G +V I +G F F + +E + R +++++ +E + Sbjct: 120 KFEVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRV 164 >UniRef50_C2NS75 Transcription antitermination protein nusG n=2 Tax=Bacillus cereus group RepID=C2NS75_BACCE Length = 179 Score = 87.5 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 38/178 (21%), Positives = 68/178 (38%), Gaps = 16/178 (8%) Query: 1 MQ--SWYLLYCKRGQLQRAQ----EHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNY 54 M+ SWY L + G + L V+ L P T+ + +G V+ L P Y Sbjct: 1 MKILSWYALCVRSGYEDLVESLILRDLNETLVSVLVPKKTVPEKRKGHFKWVTRKLLPGY 60 Query: 55 LFVEFDPEVIHTTTINATRGVSHFV-RFGAS----PAIVPSAVIH-QLSVYKPKDIVD-P 107 + + + + +F+ +F +P I + + + ++ Sbjct: 61 ILINTSMDAKMYYKLKEIPNCYNFLNKFQDDDDIYFLEIPDQEITPIIQLLNDRGTIECS 120 Query: 108 ATPYPGDKVIITEGAFEGFQAIFTEPDG-EARSMLLLNLIN--KEIKHSVKNTEFRKL 162 + G KVI+ G +G + I D + R+ LLLN + K I V+ +KL Sbjct: 121 EAYFEGSKVIVKSGPLKGREGIIRRIDKRKKRAKLLLNFLGDTKMIDVGVEFLSSQKL 178 >UniRef50_B9XD13 NusG antitermination factor n=1 Tax=bacterium Ellin514 RepID=B9XD13_9BACT Length = 120 Score = 87.2 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 29/101 (28%), Positives = 41/101 (40%), Gaps = 2/101 (1%) Query: 3 SWYLLYCKRGQLQRAQEHLERQ-AVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 +WY K A +L R V P + +EK R VSEPLFP Y+FV Sbjct: 7 AWYCARTKPKHEHIAAANLLRHANVEVFNPRLRVEKATRRGVIRVSEPLFPCYIFVRCVI 66 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK 102 E I G+S V F + +V+ +L + + Sbjct: 67 EE-KLNDIRYANGISTIVHFANRIPHISDSVVVELQEHFKE 106 >UniRef50_D1CTG7 Transcription antiterminator NusG (Fragment) n=1 Tax=Sinorhizobium saheli RepID=D1CTG7_SINSA Length = 129 Score = 87.2 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 28/122 (22%), Positives = 45/122 (36%), Gaps = 2/122 (1%) Query: 40 RGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVY 99 R + V F YLFV D IN+T GV V +P VP V+ L Sbjct: 4 RAQHRTVCSAYFDCYLFVSLDIRQQRWPPINSTVGVRRLVMSEHAPLPVPHGVVESLLAA 63 Query: 100 KPKD--IVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNT 157 + + PG K+ +T G F +L++++N+ + + Sbjct: 64 TDDEGFLHPKELLEPGQKIRVTNGPFTDQLGTLDYVGRSGAVRILIDIMNRAVPIYIDRD 123 Query: 158 EF 159 +F Sbjct: 124 KF 125 >UniRef50_C5CGE4 Transcription antitermination protein nusG n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGE4_KOSOT Length = 354 Score = 86.4 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 9/128 (7%) Query: 44 TAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD 103 L+P Y+F+E + +T V +FV G P + I L + Sbjct: 226 KITRTRLYPGYIFIEMIMTDETWNLVKSTPNVVNFVSNGGQPIELKPKEIKALLRLVGLE 285 Query: 104 IVDPAT--------PYPGDKVIITEGAFEGFQAIFTEPDGEAR-SMLLLNLINKEIKHSV 154 + T + V I G FE F TE D E + +++++ +E + Sbjct: 286 EYEEKTRPIKVEVDFEVNEMVRINSGPFEDFVGKITEIDPERQEVKVVVSIFGRETPVML 345 Query: 155 KNTEFRKL 162 +E K+ Sbjct: 346 NLSEIEKI 353 >UniRef50_O67757 Transcription antitermination protein nusG n=7 Tax=Aquificales RepID=NUSG_AQUAE Length = 248 Score = 86.4 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 48/133 (36%), Gaps = 2/133 (1%) Query: 32 MITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSA 91 IT ++ + + +FP Y+ ++ I T V V G P + Sbjct: 116 KITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEE 175 Query: 92 VIHQLSVYKPKDIVDPATPY-PGDKVIITEGAFEGFQAIFTEPDGEARSM-LLLNLINKE 149 + + + + + GD+V + EG F F E E R + +++++ + Sbjct: 176 EVQNILNQIKRGVKPSKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRM 235 Query: 150 IKHSVKNTEFRKL 162 + + K+ Sbjct: 236 TPVELDFDQVEKI 248 >UniRef50_C8WL22 NusG antitermination factor n=2 Tax=Coriobacteriaceae RepID=C8WL22_EGGLE Length = 172 Score = 86.4 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 57/170 (33%), Gaps = 9/170 (5%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVN-----CLAPMITLEKIVRGKRTAVSEPLFPNYL 55 M WY++ GQ + + + + P ++K ++G SE L P Y+ Sbjct: 1 MALWYVVQTVGGQEKHVLDLINKLVDEELIQESFIPQYEVKKRIQGVWKMRSEVLLPGYI 60 Query: 56 FVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD---PATPYP 112 FV D + + + + + + ++ + D + Sbjct: 61 FVITDQPGKLREALRSVPKFTRLLGNNDVFTPLDDQEVAFINAFTKPDHRVVEFSSGVME 120 Query: 113 GDKVIITEGAFEGFQAIFTEPDGEARSMLL-LNLINKEIKHSVKNTEFRK 161 GD+++I G + + D R L + ++ + V RK Sbjct: 121 GDEIVILNGPLMNQTGLIKKLDRHKRLAYLEIEILGRVKTVKVGLEIVRK 170 >UniRef50_A5CC98 Transcription antitermination protein nusG n=2 Tax=Orientia tsutsugamushi RepID=A5CC98_ORITB Length = 184 Score = 86.0 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 68/174 (39%), Gaps = 14/174 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHL----ERQAV-----NCLAPMITLEKIVRGKRTAVSEPLFP 52 WY++ G ++ + ++ + + P I + K+ RGK V++ P Sbjct: 9 YQWYIIRT-SGSESSIKQTILEKAAKKGIAHCFEEIIIPGIQVVKMKRGKAINVNKKTMP 67 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA---T 109 Y+ ++ D + ++ F + V + ++ V DP+ Sbjct: 68 GYILIKMDMIDQVKDFMQKVVKLNRFPGNESKIVQVTEKEVQEMMVQLENKAQDPSFLEK 127 Query: 110 PYPGDKVIITEGAFEGFQAIFTEPDGEARSMLL-LNLINKEIKHSVKNTEFRKL 162 G++V + +G FE F E D + + L +++ + + +V ++ KL Sbjct: 128 YQIGEEVRVNDGPFETFVGRIEEVDYAKKILKLSISIFQRSTELTVDFSQVEKL 181 >UniRef50_Q2ST07 Transcription antitermination protein nusG n=4 Tax=Mollicutes RepID=Q2ST07_MYCCT Length = 214 Score = 84.9 bits (209), Expect = 8e-16, Method: Composition-based stats. Identities = 27/193 (13%), Positives = 56/193 (29%), Gaps = 33/193 (17%) Query: 3 SWYLLYCKRGQLQRAQEHLERQ------AVNCLAPMITLEKIVRGKRTAVSEPLFPNYLF 56 W+++ C+ G ++ L+++ + I+ V A + FP Y+F Sbjct: 19 QWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANQVSKSGKASIKNKFPGYIF 78 Query: 57 VEFDPEVIHTTTINATRGVSHFVRFGAS-----PAIVPSAV------IHQLSVYK----- 100 + I T GV+ F+ P + + I ++ Sbjct: 79 INMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLTIEETLNMLVPNIEEIQQAHEEEKE 138 Query: 101 ----------PKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSM-LLLNLINKE 149 K + A GD V + G E + + D + + + + Sbjct: 139 QETKQKNEAVAKKALFTADFKIGDIVKVKSGIHENEEGTVKDMDYSKGVAFVAIEMFGRW 198 Query: 150 IKHSVKNTEFRKL 162 V + Sbjct: 199 TTLEVSFKNVEPI 211 >UniRef50_C5EKF0 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EKF0_9FIRM Length = 186 Score = 84.5 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 58/171 (33%), Gaps = 10/171 (5%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAV------NCLAPMITLEKIVRGKRTAVSEPLFPNY 54 M+ WY + + G+ + + L ++ + C P K +G+ LFP Y Sbjct: 1 MERWYAVQVRTGREEAVLQ-LSKKMIDGSVLKECFIPYYERMKRYQGEWHKEQYILFPGY 59 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT--PYP 112 +F+ + + G++ + G + L D + + Sbjct: 60 IFLVTEQVDELFWELKKVPGLTKILGDGMEFVPIKEEEKVILQKMGGSDHIAEMSKGYVI 119 Query: 113 GDKVIITEGAFEGFQAIFTEPDGEARSMLL-LNLINKEIKHSVKNTEFRKL 162 GD V + G + + D R ++ + + ++ + + KL Sbjct: 120 GDIVTVISGPMKEMKGKIKFIDRHKRLAVIEIEMFGRKTEVRLGLEIVMKL 170 >UniRef50_Q6VE90 Orf37 n=2 Tax=Pseudomonas syringae group RepID=Q6VE90_PSESY Length = 175 Score = 84.5 bits (208), Expect = 1e-15, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 62/158 (39%), Gaps = 11/158 (6%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVN-CLAP---MITLEKIVRGKRTAVSEPLFPNYLF 56 M +WYL+ +Q + +P IT G RT+ ++ LFP YLF Sbjct: 1 MSNWYLINHNPKAVQGIIFRIRALGAEDVYSPANLKITKRLDCNGVRTSETQ-LFPGYLF 59 Query: 57 VEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLS--VYKPKDIVDPATPYPGD 114 V+ +PEV+HT+ + GV FV FG A + +I + + D G Sbjct: 60 VKLNPEVLHTSIVLQVSGVKKFVSFGGVLATISDCLIEAIKSSLLVRVDKKVTQIECRGV 119 Query: 115 KVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKH 152 + + ++I R L L+ +E + Sbjct: 120 QPEL----LVQLESITLIRSSLDRQAALFKLLQEESRI 153 >UniRef50_B7AH17 Putative uncharacterized protein n=1 Tax=Bacteroides eggerthii DSM 20697 RepID=B7AH17_9BACE Length = 171 Score = 84.1 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 32/164 (19%), Positives = 63/164 (38%), Gaps = 9/164 (5%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY +Y + R + L Q + P+ + + GKR V++P+ LFV Sbjct: 10 WYAVYVRHNTEFRVESWLREQGIEIYLPVQDVYREHAGKRIKVTKPVISGMLFVCLSRPE 69 Query: 64 IHTTTINATRGVSHFV--RFGASPAIVPSAVIHQLS----VYKPKDIVDPATPYPGDKVI 117 + T + V HF R +P I+P + + ++ PG V Sbjct: 70 L--TIVEHAPNVHHFFSKRGTNAPLIIPDQQMADFRFMVDLSDTSILMVNEPIAPGTMVT 127 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 + +G+ +G + + + + + L + + SV + R+ Sbjct: 128 VAKGSMQGIRGEMVKYESKYYIAVRLQELGCAL-VSVPVSYVRR 170 >UniRef50_UPI00016C34F5 transcription antitermination protein nusG n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C34F5 Length = 177 Score = 84.1 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 29/165 (17%), Positives = 53/165 (32%), Gaps = 12/165 (7%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 W L + E L V P++T + K P+FP Y+F Sbjct: 13 WAALRTAARWEKAVTEQLAAAGVPVFLPLLTRVSRTKSKTQTAQLPVFPGYVFCGEREYR 72 Query: 64 IHTTTINATRG-VSHFVRFGASPAIVPSAVIHQLSVYKP-----KDIVDPATPYPGDKVI 117 T + R ++ +R A P + +L + + + GD V Sbjct: 73 DSTRVPPSCRKLIAQLLR-----APDPDQLKDELRSVADLLANRQLLQERVYGVIGDTVR 127 Query: 118 ITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRK 161 I G G G R ++ ++ + ++ +V+ K Sbjct: 128 IVGGPLAGSLGTILRLKPGTRRVLIEVSFLGARMEATVEERLLEK 172 >UniRef50_B0VET3 Putative uncharacterized protein n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VET3_9BACT Length = 191 Score = 83.7 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 26/164 (15%), Positives = 70/164 (42%), Gaps = 12/164 (7%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + W +++ K ++ ++ ++ + P T +++ + ++ V++ LFP+Y+FV D Sbjct: 23 RKWVVVHTKPRCEKKLADYAKQHQITYYLPQYTSKRVYQRRKVDVNKVLFPSYVFVGIDF 82 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSV----YKPKDIVDPATPY-PGDKV 116 + I+ +F++ A +I +L + ++P G +V Sbjct: 83 KGKQELLISG--YTVNFLKVNAQ-----KELIDELQAIYYGRQKNVQMEPGLWLEKGLEV 135 Query: 117 IITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 I G +G + + + L +N++ + + V+ + + Sbjct: 136 EIVNGPLKGIRGVVEDQSKLTEVRLQVNILKQAVLVKVRTQDIK 179 >UniRef50_A6DPM2 Transcription antitermination protein NusG n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DPM2_9BACT Length = 150 Score = 83.7 bits (206), Expect = 2e-15, Method: Composition-based stats. Identities = 27/112 (24%), Positives = 45/112 (40%), Gaps = 17/112 (15%) Query: 3 SWYLLYCKRGQLQRAQEHLERQ---------AVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY L G+ +A++ LER+ + L P + + +GK+ + +P Sbjct: 6 QWYTLQALSGKENKARQDLERRIEQDSMQDSVLEVLLPTEKVTTVRQGKKITQNRKFYPG 65 Query: 54 YLFVEFDPEVIH-------TTTINATRGVSHFVRFGASPAIVPSAVIHQLSV 98 YLFV D + + T G+ +F+ G P + I LSV Sbjct: 66 YLFVNVDLIDENGTMKEDVWHFVKNTYGIINFLG-GDKPVPLSDDEIQILSV 116 >UniRef50_Q48B18 Transcriptional regulator n=18 Tax=Pseudomonas syringae group RepID=Q48B18_PSE14 Length = 249 Score = 82.9 bits (204), Expect = 4e-15, Method: Composition-based stats. Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 9/108 (8%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEP--LFPNYLFVE 58 M++W +L Q +ER V +P + + ++V LFP YL + Sbjct: 73 MKNWRVLMHNSSVYQSLITSIERLDVEVYSPESITYRKRPDRPSSVETKVRLFPGYLLLR 132 Query: 59 FDPEVIHTTTINATRGVSHFVR-------FGASPAIVPSAVIHQLSVY 99 FDPEV HTTTI A G FV+ FG ++ + + +L Sbjct: 133 FDPEVTHTTTITALNGARGFVQFGGQACEFGGQACVMQDSTVEELKAV 180 >UniRef50_UPI0001692BF2 putative transcription antiterminator n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001692BF2 Length = 176 Score = 82.5 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 15/166 (9%) Query: 4 WYLLYCKRGQLQRAQEHLER----QAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEF 59 WY+L+ G+ +++ ++ C P + + +G R V LFP Y+F+ Sbjct: 3 WYVLFVTTGKEDVVGKYISNFCNHLSLQCFIPKKVVPECHKGVRRDVIRVLFPGYIFIRT 62 Query: 60 DPEVIHTTTINATRGVSHFVRFGAS--------PAIVPSAVIHQLS-VYKPKDIVD-PAT 109 + + + V G + +P + + + +D ++ Sbjct: 63 TMSSNLYYLLKEIPNLHYLVNSGDRKKDKSCGFYSAIPEEEMEWIRDLTGNRDTIEYSEV 122 Query: 110 PYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSV 154 KV + G +G +A+ + D R+ + + L+NK V Sbjct: 123 SIINKKVKVISGPLKGKEAMIKKVDKRKRRAKIEVTLLNKTNLVDV 168 >UniRef50_C6LL07 Putative transcription antiterminator n=3 Tax=Clostridiales RepID=C6LL07_9FIRM Length = 183 Score = 81.4 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 30/159 (18%), Positives = 58/159 (36%), Gaps = 8/159 (5%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVN-----CLAPMITLEKIVRGKRTAVSEPLFPNYLFVE 58 WY++ + G +R R+ C P ++K ++G+ + LFP Y+FV Sbjct: 17 WYVMQVQTGMEERICAQCRRKISETVLEQCFIPRYEVKKHIQGEWKTQKQILFPGYVFVV 76 Query: 59 FDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATP--YPGDKV 116 + G++ + G + L + ++ V + G +V Sbjct: 77 TSDIQNLHEELKKVIGLTKLIGTGREIVPISENEKEFLLGFGGEEQVVQMSEGIITGSQV 136 Query: 117 IITEGAFEGFQAIFTEPDGEAR-SMLLLNLINKEIKHSV 154 +I G +G + + D R + L L L+ V Sbjct: 137 VIHSGPLKGKEGYIRKIDRHKRKAWLELPLLGGMQNVQV 175 >UniRef50_B8INV2 NusG antitermination factor n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8INV2_METNO Length = 178 Score = 81.4 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 58/172 (33%), Gaps = 14/172 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 ++W+++ + +R E L R+ + P+ + + RG++ E +F +Y+F D Sbjct: 6 KTWFVVQTGPARERRVVELLAREGADTWLPLFRVTTVRRGRKVDDFEKVFASYVFAGLDE 65 Query: 62 EVIH---TTTINATRGVSHFVRFGASPAIVPSAVIHQL----------SVYKPKDIVDPA 108 E + T+ + V + P P+ + L + + + A Sbjct: 66 ETMRRRGTSVLFDCDHVLDVLGV-DRPLPFPADALQVLADRLAGHNRDETEEGRRRTEAA 124 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 G+ I G F F A E + + + + Sbjct: 125 KIQVGEMRRIINGPFMSFFAEVEEVLSNGIIKAGVRIFGRITPVEFTPDQLD 176 >UniRef50_C0ZGR2 Transcription antitermination protein nusG n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZGR2_BREBN Length = 177 Score = 81.4 bits (200), Expect = 1e-14, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 64/175 (36%), Gaps = 15/175 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHL----ERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFV 57 WY ++ + G+ + Q++L Q++ + P + + G V + FP Y+ + Sbjct: 1 MKWYAIFVESGKEEVVQKYLRLYFNEQSLKSIVPKRLVPEKKSGIVYNVLKNFFPGYVLI 60 Query: 58 EFDPEVIHTTTINATRGVSHFVRFGA--------SPAIVPSAVIH-QLSVYKPKDIVDPA 108 + + I V G+ + + I L + ++VD + Sbjct: 61 QTEMTNEMFHKIKKIPRSLRLVNNGSYYSQDEGAYYSSIEEKEITPILQLMGNGEVVDYS 120 Query: 109 TPY-PGDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRK 161 Y KVI+ G +G + I + D + R+ + L + E V K Sbjct: 121 KVYLENSKVIVESGPLKGLEGIIKKVDKHKNRAKIFLTFMGVEKTIDVGIEILSK 175 >UniRef50_Q4A951 Transcription antitermination protein n=4 Tax=Mycoplasma RepID=Q4A951_MYCHJ Length = 190 Score = 80.6 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 59/186 (31%), Gaps = 24/186 (12%) Query: 1 MQSWYLLYCKRGQLQRA---------QEHLER--QAVNCL-APMITLEKIVRGKRTAVSE 48 + WY++ + A E+LE Q + P G++ Sbjct: 3 IYKWYMISTISSKEDTAISLLKNRIKYENLEEHFQEITKFDVPYYEENPNKPGEKKLKYR 62 Query: 49 PLFPNYLFVEFDPEVIHTTTINATRGVSHFVRF---GASPAIVPSAVIHQLSVYKPKDIV 105 L+ Y F++ + + T+ V+ V G P + ++ + I+ Sbjct: 63 NLYKGYFFIKMNMVDKAWFVVRNTQYVTGLVGSHGRGTKPTPISPRQFERMRKKWDQQIL 122 Query: 106 DPAT-------PYPGDKVIITEGAFE-GFQAIFTEPDGEARSML-LLNLINKEIKHSVKN 156 + GD V +T G F F I + + L ++ + + + Sbjct: 123 NFQQTNDGTINWEIGDWVKVTHGPFSDDFGKIIEMNVTKTLITVELESVFGRRTPATFEY 182 Query: 157 TEFRKL 162 +K+ Sbjct: 183 KNLKKV 188 >UniRef50_B9JXL7 Transcription antitermination protein nusG n=3 Tax=Agrobacterium vitis S4 RepID=B9JXL7_AGRVS Length = 220 Score = 80.6 bits (198), Expect = 2e-14, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 58/162 (35%), Gaps = 11/162 (6%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRT--AVSEPLFPNYLFVEFDP 61 W + CK G Q ++ L Q ++C P R ++ V PLF YLFV P Sbjct: 52 WVVARCKSGLEQVIRDALAEQGIDCWCPCERRRLPPRRRKPALVVERPLFRGYLFVRVIP 111 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSV--------YKPKDIVDPATPYPG 113 + + + + P ++P ++ QL + + V P G Sbjct: 112 DNEAYAGLLLASRLQSLMGQDGKPYLMPETLMRQLQLSAKAAERRHMDAGDVPPMPDMLG 171 Query: 114 DKVIITEGAFEGFQAIFTEP-DGEARSMLLLNLINKEIKHSV 154 +V I G F F + + ++ + + + +V Sbjct: 172 KQVTIRSGPFADFVVTVRKVLSKRGQVVVDVPMFGGMSEVTV 213 >UniRef50_A7V7E7 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=A7V7E7_BACUN Length = 243 Score = 80.2 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 57/151 (37%), Gaps = 16/151 (10%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY L G+ ++A +++ + + P K+++GKR V+E PN F E Sbjct: 68 WYALRTTYGREKKAYDYMTAKGITAFYPTTDTVKLIKGKRKIVTESRLPNIFFAYGTEEQ 127 Query: 64 IHTTTINAT-----RGVSHFVRFGAS----PAIVPSAVIHQLSVYKPKD-------IVDP 107 + T + R V G P IVP + L + D +++ Sbjct: 128 LKTFVYDNVNLPFLRFYYRHVHVGRRIEKIPMIVPDYQMESLKIICAADADNTIVSLIEV 187 Query: 108 ATPYPGDKVIITEGAFEGFQAIFTEPDGEAR 138 G V + +GAF+G G+ R Sbjct: 188 PKFEKGQLVRVIDGAFKGVIGRVARWQGQQR 218 >UniRef50_A7Z6E4 Transcription antitermination protein nusG n=1 Tax=Bacillus amyloliquefaciens FZB42 RepID=A7Z6E4_BACA2 Length = 176 Score = 79.8 bits (196), Expect = 3e-14, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 62/175 (35%), Gaps = 15/175 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHL----ERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFV 57 WY L+ + G+ + Q+ L + QA+ + P + + G + + +FP Y+ Sbjct: 1 MKWYALFVESGKEETVQKFLRLQFDEQALYSIIPKKKVTERKAGIKYEALKKMFPGYVLF 60 Query: 58 EFDPEVIHTTTINATRGVSHFVRFGASPA--------IVPSAVI-HQLSVYKPKDIVDPA 108 + I V GA + + I + + D VD + Sbjct: 61 KTKMTERTFHKIKELPISCRIVNNGAYYSKERKTYFTTIKDEEILPIIRLIGEGDTVDYS 120 Query: 109 TPY-PGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 Y KV + G +G + I + D R+ + L+ + + +V K Sbjct: 121 KVYIENSKVTVASGPLKGMEGIIKKIDKRKRRAKICLSFMGLDKMVNVGIEVLSK 175 >UniRef50_A6UA20 NusG antitermination factor n=1 Tax=Sinorhizobium medicae WSM419 RepID=A6UA20_SINMW Length = 219 Score = 79.5 bits (195), Expect = 4e-14, Method: Composition-based stats. Identities = 30/169 (17%), Positives = 62/169 (36%), Gaps = 11/169 (6%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFP---NYLFVEFD 60 W+ L G+ + ++ L+ AV L PM + R + + + P Y+ V+ Sbjct: 52 WFALRVWTGREKTVEKSLDIMAVRSLVPMRKGPDLRR-RGRVIEGQMMPVIHGYVLVQMM 110 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATP-----YPGDK 115 + + V + P + +++ + D P G+ Sbjct: 111 ALSEYLAGLLGVEHVIDVLGGCERPMRLSDKEVNRFNGLARNGNFDWERPVDLVVRAGEP 170 Query: 116 VIITEGAFEGFQAIFTEPDGEAR--SMLLLNLINKEIKHSVKNTEFRKL 162 V+IT G F +A P + R ++ ++ + E+ +V +KL Sbjct: 171 VLITAGPFCDRRATVITPSKKGRGDVVVSIDFMGGEVPVTVPLALLKKL 219 >UniRef50_C3RLT4 NusG antitermination factor n=2 Tax=Bacteria RepID=C3RLT4_9MOLU Length = 173 Score = 79.1 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 64/162 (39%), Gaps = 9/162 (5%) Query: 2 QSWYLLYCKRGQLQRAQ---EHLERQAV--NCLAPMITLEKIVRGKRTAVSEPLFPNYLF 56 ++WY++ + G+ ++ + E L + + C P K +G V E LF Y+F Sbjct: 3 ENWYVIQVRTGKEEKIKNTCEKLISRDILEECFIPKCIRLKKYQGTWKEVDEVLFKGYVF 62 Query: 57 VEFDPEVIHTTTINATRGVSHFVRFGASPA--IVPSAVIHQLSVYKPKDIVDPATPY-PG 113 + D + ++ + I+ I L K K IVD + Y G Sbjct: 63 MISDHIDELFNKLKLIPDLTKVLGNDGEFICPILKEEAIFLLKFGKEKHIVDLSQGYIEG 122 Query: 114 DKVIITEGAFEGFQAIFTEPDGEARSM-LLLNLINKEIKHSV 154 DK+ I G G++ + + D R + + L ++ V Sbjct: 123 DKINIISGPLVGYEGMIKKIDRHKRVAYIEVKLFDQITMVQV 164 >UniRef50_C8WIA3 NusG antitermination factor n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WIA3_EGGLE Length = 170 Score = 79.1 bits (194), Expect = 5e-14, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 58/167 (34%), Gaps = 9/167 (5%) Query: 4 WYLLYCKRGQLQRAQEHLERQA-----VNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVE 58 WY++ G+ +E C P ++K RG+ + LFP YL V Sbjct: 2 WYVVQTVAGREFAVCRLIESLVEDDVLQECFVPRYEVQKQFRGQWRTCTATLFPGYLIVV 61 Query: 59 FDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD---IVDPATPYPGDK 115 D + + + + + + + + K + GD+ Sbjct: 62 TDRVDELESQLRRVPAFAWVLSNDGGFVPLERDEVAWIDAFTEKGHRTVGVSEGVIEGDR 121 Query: 116 VIITEGAFEGFQAIFTEPDGEARSMLL-LNLINKEIKHSVKNTEFRK 161 +I+ +G G + + + R+ L +++ + I+ + RK Sbjct: 122 IIVLKGPLVGREGWIRKINRRKRTAYLEIDMFGRTIQTKIGLGIVRK 168 >UniRef50_A4YU22 Transcription antitermination protein nusG n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4YU22_BRASO Length = 201 Score = 78.7 bits (193), Expect = 6e-14, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 50/171 (29%), Gaps = 14/171 (8%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRG--------KRTAVSEPLFPNYL 55 WY+L + + + ++ P++T+ K R +R V PL + Sbjct: 31 WYILRTHPHCEAKVMKAFRLRNISAYLPVMTVSKEFRRMRRGFEWIERRDVVSPLILGAV 90 Query: 56 FVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA----TPY 111 + D E G +RFG + + + + + Sbjct: 91 LI-PDFEER-WQCWRGVDGAVGLLRFGEWTPRLTPKLFQDIRKIEDIANTPKSKRARAFE 148 Query: 112 PGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G V + G F F A D R + + + + E + Sbjct: 149 VGQLVRVLSGPFRYFSARVERIDSRGRLSVGAEIFGRITPIDIDEGEIEAV 199 >UniRef50_B8IIP1 Transcription antitermination protein nusG n=2 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IIP1_METNO Length = 230 Score = 78.7 bits (193), Expect = 6e-14, Method: Composition-based stats. Identities = 37/173 (21%), Positives = 68/173 (39%), Gaps = 15/173 (8%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP-- 61 W+L+ C+ G+ ++ + L A+ L + ++ G+ PLF LFV DP Sbjct: 59 WHLVDCRAGKARQFADALAAGAIPALRLSEEVVRVRSGRPIRTRMPLFGRLLFVGLDPHS 118 Query: 62 EVIHTTTINATRGVSHFVRF-GASPAIVPSAVIHQLSVYKPKDI----------VDPATP 110 E H R + VRF +VP + Q + D+ + Sbjct: 119 EDAHWLRDKYDREIKG-VRFRDEKFMLVPGRELDQFTGVLGGDVPPAERRTGAALTVEDF 177 Query: 111 YPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162 G+ V + +G F F + E D E + +++ + +++ T+ KL Sbjct: 178 EIGEAVRVADGPFASFSGLVEEIDAESQNLKVSVSIFGRSTPVTLEPTQVEKL 230 >UniRef50_B0P702 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P702_9FIRM Length = 169 Score = 78.7 bits (193), Expect = 6e-14, Method: Composition-based stats. Identities = 31/142 (21%), Positives = 46/142 (32%), Gaps = 4/142 (2%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M WY+L GQ ++ L + P G T+ LFP Y+F+ + Sbjct: 1 MAKWYVLQVLAGQETAVRDALHIMGIRAAVPQEERLLRKNGGWTSRIYTLFPGYVFLSLE 60 Query: 61 PEVIHTTTINATRGVSHFVRFGA-SPAIVPSAVIHQLSVYKPKDI---VDPATPYPGDKV 116 + + A V F+ F SP+ + L + P V Sbjct: 61 YSAENYYRVKAVPHVLRFLGFSGLSPSCLTHLEAEWLRLLSNGGEPLKPSRVEELPDGSV 120 Query: 117 IITEGAFEGFQAIFTEPDGEAR 138 I EG + F D AR Sbjct: 121 RIMEGVLQNFPVRSIHFDRRAR 142 >UniRef50_B1ZWG3 NusG antitermination factor n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZWG3_OPITP Length = 180 Score = 77.9 bits (191), Expect = 1e-13, Method: Composition-based stats. Identities = 22/174 (12%), Positives = 50/174 (28%), Gaps = 36/174 (20%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE- 62 W + + K ++ + + P++ + R + ++PLFP Y+F E Sbjct: 23 WLVCHTKPRCEKKFAALMAAERFEHYLPLVDSVRKYRQQTKRFTKPLFPGYVFACVPNEK 82 Query: 63 ----------------VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD 106 + V V G ++P Sbjct: 83 RARIFQQDLLARAIDVDDERRFLRQLDDVRAIVASGYELTVLP----------------- 125 Query: 107 PATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 G +V I G G + +P +L ++++ + + + + Sbjct: 126 --LLTRGRRVKIVGGPLHGLEGFVDDPSNPRGVVLSVDVLQQGLLVKLPAENLQ 177 >UniRef50_C8PLY0 Transcription antitermination protein, NusG family n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PLY0_9SPIO Length = 186 Score = 77.5 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 59/166 (35%), Gaps = 10/166 (6%) Query: 5 YLLYCKRGQL-----QRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEF 59 Y + K G+ + + + E + P L +G R V P+FP Y+F+E Sbjct: 4 YAVQVKTGKEPELLKKIRKLNEENHEIQAYFPRRVLYIKKKGIRQKVDAPVFPGYIFLEI 63 Query: 60 DPEVIHTT-TINATRGVSHFVRFGASPAIVPS---AVIHQLSVYKPKDIVDPATPYPGDK 115 D + + T HF+ +P + +++H + + Sbjct: 64 DDLSLPLCWQLRKTPNFYHFLPNNQNPLPLVDNDLSLLHHFLSFGEVTAPSKVYFDANSR 123 Query: 116 VIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFR 160 + + +GA +G + + D R+ +LL++ + Sbjct: 124 ICVIDGALKGLEGKIIKVDRRKQRAKVLLDMYTDSFPIDLAFDVIE 169 >UniRef50_B5CXQ3 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5CXQ3_9BACE Length = 171 Score = 77.5 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 27/165 (16%), Positives = 60/165 (36%), Gaps = 8/165 (4%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY Y + ++ E LE V P+ + + ++ + + + P +F+ D E Sbjct: 9 WYAFYVRMHHEKKTAEKLEMLKVVHFLPIQEVIRQWSDRKKKIKQVVIPMLIFICTD-EK 67 Query: 64 IHTTTINATRGVSHFV--RFGASPAIVPSAVIH----QLSVYKPKDIVDPATPYPGDKVI 117 + ++ + PAI+ + + L PG+KV Sbjct: 68 GRIELLQNLPSLTGCLIDPATRRPAIIRNEEMEKFKFMLDFSDETIRFQSEPLAPGEKVE 127 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 + +G+ +G Q E + ++ M+ + + + +KL Sbjct: 128 VIKGSLKGLQGELVELEDHSQVMIRIEHLGYAT-VEIPVGYVKKL 171 >UniRef50_Q6MDM6 Transcription antitermination protein nusG n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MDM6_PARUW Length = 124 Score = 77.5 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 24/118 (20%), Positives = 49/118 (41%), Gaps = 6/118 (5%) Query: 50 LFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVI-HQLSVYKPK--DIVD 106 ++P YL ++ + + T GV F+ G P + + L + K I Sbjct: 1 MWPGYLLIKMNLSDESWQYVKNTNGVIDFLG-GDKPTPLTDFEVGEILKDLEDKKRKITQ 59 Query: 107 PATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKH-SVKNTEFRKL 162 GD+V IT+G F F TE + R +L+++ ++ + ++ + ++ Sbjct: 60 KHKFEVGDRVKITDGVFVNFIGTVTEVFHDKGRLSVLVSIFGRDTRVDDLEFVQVEEI 117 >UniRef50_D0D588 Putative NusG antitermination factor n=1 Tax=Citreicella sp. SE45 RepID=D0D588_9RHOB Length = 222 Score = 77.5 bits (190), Expect = 1e-13, Method: Composition-based stats. Identities = 31/165 (18%), Positives = 54/165 (32%), Gaps = 15/165 (9%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 +WY L C+ Q + A+ L + V P+ + VRGK P Y+F FD Sbjct: 44 AWYALLCRPQQERHAESWLAARGVYAFHPVTSRRTRVRGKLREYERRYLPGYVFARFDGI 103 Query: 63 VIHTTTINATRGVSHFVR-----FG----ASPAIVPSAVIHQLSVYKPKDIVD-----PA 108 I + + ++ + +G A + L + Sbjct: 104 PIPHRVLTS-PFLTGALCRSDGQWGVLGPKRLAALHEMRARDLRQEDERQEQKRRAAAAR 162 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHS 153 G++ + G FEG E D + +L +E + Sbjct: 163 RVRAGERAMFRAGPFEGMSCEVVEIDAAGGVKVRFDLFGRENSVT 207 >UniRef50_A5IXI2 Transcription antitermination protein nusG n=1 Tax=Mycoplasma agalactiae PG2 RepID=A5IXI2_MYCAP Length = 199 Score = 75.6 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 28/190 (14%), Positives = 59/190 (31%), Gaps = 33/190 (17%) Query: 4 WYLLYCKRGQLQRAQEHLERQAV-----NCLA--------------PMITLEKIVRGK-- 42 WY++ G+ + E L+ + V C P++T ++ + Sbjct: 6 WYMISTVSGKEDKVVESLKNRIVSEQVEECFNQNATEEGAFKIFRKPVLTTKEAEKKALG 65 Query: 43 --RTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRF---GASPAIVPSAVIHQLS 97 ++ Y+F+ D + T+ V+ + G P V I Sbjct: 66 EPYKVKMSNMYGGYIFINMDMTDKAWFVVRNTQYVTGLIGSAGKGTKPTPVTKKEIDLAF 125 Query: 98 VYKPKDIVDPAT------PYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEI 150 + + I D G+ V I +G F+G E + + + + K++ Sbjct: 126 EKEKQLIEDFNAGKIIDKFTVGEIVEIIDGPFKGTIGKVLEANESIHKVTVEVEHFGKKV 185 Query: 151 KHSVKNTEFR 160 + Sbjct: 186 PTDFDYSVVE 195 >UniRef50_Q54017 AnfA1 n=2 Tax=Serratia entomophila RepID=Q54017_9ENTR Length = 154 Score = 75.6 bits (185), Expect = 5e-13, Method: Composition-based stats. Identities = 31/106 (29%), Positives = 43/106 (40%), Gaps = 10/106 (9%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQA-VNCL-APMITLEKIVRGKRTAVSEPLF-------- 51 + WYL+ C G++ Q+ LE AP + G + F Sbjct: 3 KKWYLIRCNYGKIDLGQKSLETYGLFEGFPAPNLKPSLEFEGFYLTFQKNFFRKGMVYFS 62 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLS 97 P YLFV FD + I + I GV FVRFG +P VI ++ Sbjct: 63 PPYLFVRFDIDHIPISKIQHAIGVKGFVRFGGGIKSIPDIVIGKIM 108 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_C7M2W0 Transcription antitermination protein nusG n=1 T... 168 5e-41 UniRef50_D2C1D2 NusG antitermination factor n=5 Tax=Gammaproteob... 163 1e-39 UniRef50_A5D5K3 Transcription antitermination protein nusG n=7 T... 163 3e-39 UniRef50_Q01SW9 Transcription antitermination protein nusG n=75 ... 162 3e-39 UniRef50_P0AFW1 Transcriptional activator rfaH n=162 Tax=Enterob... 161 5e-39 UniRef50_Q6A6K1 Transcription antitermination protein nusG n=3 T... 160 2e-38 UniRef50_B9KYX2 Transcription antitermination protein nusG n=5 T... 159 3e-38 UniRef50_D0LJE5 Transcription antitermination protein nusG n=1 T... 157 1e-37 UniRef50_D1CD65 Transcription antitermination protein nusG n=5 T... 157 1e-37 UniRef50_C1DDG1 RfaH n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 156 2e-37 UniRef50_A3EVT3 Transcription antitermination protein nusG n=4 T... 154 8e-37 UniRef50_Q1AU17 Transcription antitermination protein nusG n=1 T... 154 1e-36 UniRef50_Q9KGE7 Transcription antitermination protein nusG n=16 ... 154 1e-36 UniRef50_C7RAP1 Transcriptional acivator RfaH n=1 Tax=Kangiella ... 153 2e-36 UniRef50_A4WZX9 Transcription antitermination protein nusG n=1 T... 153 2e-36 UniRef50_A0KGQ9 Transcriptional activator RfaH n=3 Tax=Aeromonad... 153 3e-36 UniRef50_Q82X31 Putative transcriptional activator n=1 Tax=Nitro... 153 3e-36 UniRef50_D1NBR2 Transcription antitermination protein nusG n=1 T... 153 3e-36 UniRef50_B0S060 Transcription antitermination protein nusG n=5 T... 153 3e-36 UniRef50_B4R8J9 Transcription antitermination protein nusG n=157... 152 3e-36 UniRef50_A9ND88 Transcriptional activator RfaH n=6 Tax=Coxiella ... 152 3e-36 UniRef50_Q9CBK0 Transcription antitermination protein nusG n=4 T... 152 4e-36 UniRef50_A1WZB7 Transcription antitermination protein nusG n=1 T... 152 4e-36 UniRef50_Q0AUG6 Transcription antitermination protein nusG n=33 ... 152 5e-36 UniRef50_A6LPP9 Transcription antitermination protein nusG n=27 ... 151 7e-36 UniRef50_A6FV14 Transcription antitermination protein nusG n=2 T... 151 8e-36 UniRef50_P0AA01 Transcription antitermination protein nusG n=217... 151 9e-36 UniRef50_D0WPF7 Transcription antitermination protein nusG n=1 T... 150 1e-35 UniRef50_P27309 Transcription antitermination protein nusG n=58 ... 150 1e-35 UniRef50_Q4K6G2 Transcriptional activator RfaH n=2 Tax=Pseudomon... 150 1e-35 UniRef50_Q7MMR1 Transcription antiterminator n=58 Tax=Vibrionale... 150 2e-35 UniRef50_Q5HRL6 Transcription antitermination protein nusG n=212... 149 2e-35 UniRef50_B1I1L1 Transcription antitermination protein nusG n=3 T... 149 3e-35 UniRef50_Q2LQ92 Transcription antitermination protein nusG n=4 T... 149 3e-35 UniRef50_A6F1J5 Transcriptional activator RfaH n=2 Tax=Marinobac... 149 4e-35 UniRef50_Q1QVL5 Transcription antitermination protein nusG n=1 T... 148 5e-35 UniRef50_Q9CK84 Transcription antitermination protein nusG n=81 ... 148 5e-35 UniRef50_Q1WST1 Transcription antitermination protein nusG n=55 ... 148 5e-35 UniRef50_A3WUF1 Transcriptional antitermination protein, putativ... 148 6e-35 UniRef50_B8DVU5 Transcription antitermination protein nusG n=21 ... 148 7e-35 UniRef50_Q0ACI7 Transcription antitermination protein nusG n=1 T... 148 8e-35 UniRef50_C8WBL1 Transcription antitermination protein nusG n=7 T... 148 8e-35 UniRef50_C8XBG0 Transcription antitermination protein nusG n=4 T... 147 9e-35 UniRef50_D1BP79 Transcription antitermination protein nusG n=5 T... 147 1e-34 UniRef50_C4Z2Q9 Transcription antitermination protein nusG n=20 ... 147 1e-34 UniRef50_Q48H23 Transcriptional activator RfaH n=7 Tax=Pseudomon... 146 2e-34 UniRef50_P35872 Transcription antitermination protein nusG n=13 ... 146 3e-34 UniRef50_C9M8Z2 Transcription antitermination protein nusG n=2 T... 146 3e-34 UniRef50_D1B6U2 Transcription antitermination protein nusG n=1 T... 145 4e-34 UniRef50_Q1YPV4 Transcriptional activator RfaH n=1 Tax=gamma pro... 145 5e-34 UniRef50_Q3J8A9 Transcriptional activator RfaH n=1 Tax=Nitrosoco... 144 7e-34 UniRef50_A4QBE9 Transcription antitermination protein nusG n=16 ... 144 7e-34 UniRef50_C1Z9H7 Transcription antitermination protein nusG n=1 T... 144 7e-34 UniRef50_B1KMD8 Transcriptional acivator RfaH n=21 Tax=Shewanell... 144 9e-34 UniRef50_C8QDS8 Transcriptional acivator RfaH n=2 Tax=Pantoea sp... 144 9e-34 UniRef50_D2RNN9 NusG antitermination factor n=1 Tax=Acidaminococ... 144 1e-33 UniRef50_B0RIR6 Transcription antitermination protein nusG n=16 ... 143 2e-33 UniRef50_Q2WBC3 Transcription antitermination protein nusG n=1 T... 143 2e-33 UniRef50_P52852 Transcription antitermination protein nusG n=51 ... 143 2e-33 UniRef50_C4LL90 Transcription antitermination protein nusG n=5 T... 143 2e-33 UniRef50_A0XZ39 Transcriptional activator RfaH n=2 Tax=Alteromon... 143 2e-33 UniRef50_Q3KCF2 Transcriptional activator RfaH n=1 Tax=Pseudomon... 143 3e-33 UniRef50_C4XIP4 Transcription antitermination protein nusG n=6 T... 143 3e-33 UniRef50_A4XLK3 Transcription antitermination protein nusG n=10 ... 142 4e-33 UniRef50_Q9CDV7 Transcription antitermination protein nusG n=52 ... 142 5e-33 UniRef50_P57151 Transcription antitermination protein nusG n=17 ... 142 5e-33 UniRef50_C7RDB1 Transcription antitermination protein nusG n=2 T... 142 5e-33 UniRef50_Q1RHC5 Transcription antitermination protein nusG n=15 ... 141 5e-33 UniRef50_B3QYK9 Transcription antitermination protein nusG n=3 T... 141 6e-33 UniRef50_C8NX40 Transcription antitermination protein nusG n=1 T... 141 6e-33 UniRef50_C2KN14 Transcription antitermination protein nusG n=3 T... 141 6e-33 UniRef50_A6W3A4 Transcription antitermination protein nusG n=20 ... 141 6e-33 UniRef50_C9LQP9 Transcription antitermination protein nusG n=1 T... 141 7e-33 UniRef50_D0MHN6 Transcription antitermination protein nusG n=80 ... 141 1e-32 UniRef50_A6GM36 NusG antitermination factor n=1 Tax=Limnobacter ... 140 1e-32 UniRef50_A1T084 NusG antitermination factor n=1 Tax=Psychromonas... 140 2e-32 UniRef50_Q0FE68 Transcription antitermination protein nusG n=1 T... 140 2e-32 UniRef50_A3ZLI3 Transcription antitermination protein nusG n=1 T... 139 3e-32 UniRef50_A6CA55 Transcription antitermination protein nusG n=1 T... 139 3e-32 UniRef50_Q1UZH8 Transcription antitermination protein nusG n=4 T... 139 3e-32 UniRef50_P65591 Transcription antitermination protein nusG n=84 ... 139 3e-32 UniRef50_B2KEU4 Transcription antitermination protein nusG n=2 T... 139 3e-32 UniRef50_Q0F316 Transcriptional activator RfaH n=1 Tax=Mariprofu... 138 5e-32 UniRef50_B9CLA2 Transcription antitermination protein nusG n=1 T... 138 5e-32 UniRef50_B1I6V9 Transcription antitermination protein nusG n=1 T... 138 8e-32 UniRef50_UPI0000E0F5F6 transcriptional activator RfaH n=1 Tax=Gl... 138 9e-32 UniRef50_B8E0K4 Transcription antitermination protein nusG n=2 T... 137 1e-31 UniRef50_Q9ZK20 Transcription antitermination protein nusG n=52 ... 137 1e-31 UniRef50_B8FH43 NusG antitermination factor n=1 Tax=Desulfatibac... 137 2e-31 UniRef50_P68893 Transcription antitermination protein nusG n=32 ... 137 2e-31 UniRef50_Q6AP83 Transcription antitermination protein nusG n=1 T... 136 2e-31 UniRef50_A0Q872 Transcription antitermination protein nusG n=11 ... 136 2e-31 UniRef50_Q83MQ7 Transcription antitermination protein nusG n=1 T... 136 2e-31 UniRef50_B6G0A9 Transcription antitermination protein nusG n=3 T... 136 3e-31 UniRef50_B3EL56 Transcription antitermination protein nusG n=8 T... 136 3e-31 UniRef50_C0QWX1 Transcription antitermination protein nusG n=2 T... 135 4e-31 UniRef50_B1ZPC3 Transcription antitermination protein nusG n=3 T... 135 4e-31 UniRef50_Q2LVW1 Transcription antitermination protein nusG n=1 T... 135 4e-31 UniRef50_Q5QWY1 Transcription antiterminator RfaH n=2 Tax=Idioma... 135 5e-31 UniRef50_D2MPP9 Transcription termination/antitermination factor... 134 6e-31 UniRef50_B2UQY7 Transcription antitermination protein nusG n=2 T... 134 7e-31 UniRef50_B3E158 Transcription antitermination protein nusG n=3 T... 134 8e-31 UniRef50_D2R5P4 NusG antitermination factor n=1 Tax=Pirellula st... 134 9e-31 UniRef50_B8KUX9 Transcription termination factor nusG domain pro... 134 1e-30 UniRef50_C1A6N2 Transcription antitermination protein nusG n=1 T... 134 1e-30 UniRef50_C7PUS0 NusG antitermination factor n=1 Tax=Chitinophaga... 133 1e-30 UniRef50_Q1Q029 Similar to transcription antitermination protein... 133 2e-30 UniRef50_C6Y0K9 NGN domain protein n=1 Tax=Pedobacter heparinus ... 133 2e-30 UniRef50_Q87A27 Transcription antitermination protein nusG n=71 ... 133 3e-30 UniRef50_C7GYQ7 Transcription antitermination protein nusG n=1 T... 132 3e-30 UniRef50_Q2JTQ7 Transcription antitermination protein nusG n=10 ... 132 4e-30 UniRef50_B3T6R2 Putative transcription termination factor nusG n... 132 4e-30 UniRef50_Q14PQ9 Transcription antitermination protein nusG n=1 T... 131 5e-30 UniRef50_Q6MJ02 Transcription antitermination protein nusG n=1 T... 131 5e-30 UniRef50_P36265 Transcription antitermination protein nusG n=48 ... 131 6e-30 UniRef50_A7BC06 Transcription antitermination protein nusG n=2 T... 131 7e-30 UniRef50_A6FES1 Putative transcriptional activator RfaH n=1 Tax=... 130 2e-29 UniRef50_Q01XJ6 NusG antitermination factor n=1 Tax=Candidatus S... 129 2e-29 UniRef50_A0LIY4 NusG antitermination factor n=2 Tax=Syntrophobac... 128 5e-29 UniRef50_A6GCJ0 Transcription antitermination protein nusG n=1 T... 128 6e-29 UniRef50_C4V5M2 Transcription antitermination protein nusG n=2 T... 128 7e-29 UniRef50_B1VAN1 Transcription antitermination protein nusG n=6 T... 128 7e-29 UniRef50_B0SAG6 Transcription antitermination protein nusG n=6 T... 128 9e-29 UniRef50_A1VS68 NusG antitermination factor n=2 Tax=Polaromonas ... 127 1e-28 UniRef50_C6QI43 NusG antitermination factor n=1 Tax=Hyphomicrobi... 127 1e-28 UniRef50_Q01TC5 NusG antitermination factor n=1 Tax=Candidatus S... 126 2e-28 UniRef50_A4EGG1 Transcriptional antitermination protein, putativ... 126 2e-28 UniRef50_C0QI35 Transcriptional antiterminator (SH3-like protein... 126 2e-28 UniRef50_C6XVK8 NGN domain protein n=1 Tax=Pedobacter heparinus ... 126 2e-28 UniRef50_A5TS63 Transcription antitermination protein nusG n=10 ... 125 4e-28 UniRef50_C7NC81 Transcription antitermination protein nusG n=10 ... 124 7e-28 UniRef50_C0W699 Transcription antitermination protein nusG n=1 T... 124 8e-28 UniRef50_C9RQP0 Transcription antitermination protein nusG n=1 T... 124 1e-27 UniRef50_C7PS65 NusG antitermination factor n=1 Tax=Chitinophaga... 123 2e-27 UniRef50_Q7UMY8 Transcription antitermination protein nusG n=1 T... 123 2e-27 UniRef50_Q1NMQ2 NGN n=3 Tax=delta proteobacterium MLMS-1 RepID=Q... 123 2e-27 UniRef50_Q1Q133 Transcription antitermination protein nusG n=1 T... 123 2e-27 UniRef50_Q04WD1 Transcription antiterminator n=4 Tax=Leptospira ... 123 2e-27 UniRef50_B0VGC6 Transcription antitermination protein nusG n=1 T... 123 2e-27 UniRef50_Q3AU98 Transcription antitermination protein nusG n=6 T... 123 2e-27 UniRef50_C7PTI0 NusG antitermination factor n=1 Tax=Chitinophaga... 122 3e-27 UniRef50_O51355 Transcription antitermination protein nusG n=22 ... 122 4e-27 UniRef50_A3V684 Transcriptional activator RfaH n=1 Tax=Loktanell... 122 5e-27 UniRef50_C7PUF8 Transcription antitermination protein nusG n=4 T... 122 5e-27 UniRef50_B5YJ95 Transcription termination factor NusG domain pro... 121 6e-27 UniRef50_Q2S1Q0 Transcription antitermination protein nusG n=1 T... 121 7e-27 UniRef50_C7PT75 NusG antitermination factor n=1 Tax=Chitinophaga... 120 1e-26 UniRef50_A6EBM5 Putative uncharacterized protein n=1 Tax=Pedobac... 120 2e-26 UniRef50_B4S8Z4 NusG antitermination factor n=4 Tax=Chlorobiacea... 120 2e-26 UniRef50_O83264 Transcription antitermination protein nusG n=4 T... 119 2e-26 UniRef50_Q1IKV1 Transcription antitermination protein nusG n=1 T... 119 3e-26 UniRef50_A9ECY4 Putative uncharacterized protein n=1 Tax=Kordia ... 119 3e-26 UniRef50_Q5GRY4 Transcription antitermination protein nusG n=8 T... 119 4e-26 UniRef50_Q8R8A2 Transcription antitermination protein nusG n=1 T... 119 4e-26 UniRef50_Q1ITB0 Transcription antitermination protein nusG n=1 T... 118 5e-26 UniRef50_Q2CAE9 Transcriptional antitermination protein, putativ... 118 5e-26 UniRef50_Q1D5E3 NusG-like protein n=2 Tax=Myxococcus xanthus Rep... 118 6e-26 UniRef50_B0A697 Transcription antitermination protein nusG n=1 T... 118 6e-26 UniRef50_B3ETZ5 Transcription antitermination protein nusG n=1 T... 118 7e-26 UniRef50_A3XR75 NusG antitermination factor n=1 Tax=Leeuwenhoeki... 118 1e-25 UniRef50_Q982S4 Transcription antitermination protein nusG n=1 T... 117 1e-25 UniRef50_B9KHV6 Transcription antitermination protein nusG n=10 ... 117 1e-25 UniRef50_A5FN19 Transcription antitermination protein nusG n=1 T... 117 1e-25 UniRef50_B4D2H1 Transcription antitermination protein nusG n=1 T... 117 1e-25 UniRef50_A9DI26 NusG antitermination factor n=1 Tax=Kordia algic... 116 2e-25 UniRef50_C7PGB9 NusG antitermination factor n=1 Tax=Chitinophaga... 116 2e-25 UniRef50_C6PET8 Transcription antitermination protein nusG n=1 T... 116 3e-25 UniRef50_UPI000197AEF0 hypothetical protein BACCOPRO_00694 n=1 T... 116 3e-25 UniRef50_B3DWJ1 Transcriptional activator RfaH, NusG family n=1 ... 116 4e-25 UniRef50_Q6AIA2 Related to transcriptional activators n=1 Tax=De... 116 4e-25 UniRef50_D2LJZ0 NusG antitermination factor n=1 Tax=Rhodomicrobi... 115 6e-25 UniRef50_C8VZE8 Transcription antitermination protein nusG n=1 T... 114 9e-25 UniRef50_B9XAW5 NusG antitermination factor n=1 Tax=bacterium El... 114 1e-24 UniRef50_C5EKF0 Predicted protein n=1 Tax=Clostridiales bacteriu... 114 1e-24 UniRef50_Q5LEP1 Putative LPS-related regulatory protein n=4 Tax=... 113 1e-24 UniRef50_UPI0001B49F58 putative LPS-related regulatory protein n... 113 2e-24 UniRef50_A3I2H8 NusG antitermination factor n=1 Tax=Algoriphagus... 113 3e-24 UniRef50_D2QI92 NusG antitermination factor n=2 Tax=Spirosoma li... 112 4e-24 UniRef50_B9YBP8 Putative uncharacterized protein n=1 Tax=Holdema... 112 4e-24 UniRef50_Q3SSD1 Transcription antitermination protein nusG n=1 T... 112 5e-24 UniRef50_C8WL22 NusG antitermination factor n=2 Tax=Coriobacteri... 110 2e-23 UniRef50_A7AFP3 Putative uncharacterized protein n=2 Tax=Parabac... 109 2e-23 UniRef50_C4XFX3 Putative uncharacterized protein n=1 Tax=Mycopla... 109 3e-23 UniRef50_B5Y935 Transcription antitermination protein nusG n=1 T... 109 3e-23 UniRef50_A3J1W0 Putative transcriptional regulator n=1 Tax=Flavo... 109 3e-23 UniRef50_D1AXH4 NusG antitermination factor n=1 Tax=Streptobacil... 109 4e-23 UniRef50_A6DRM3 Putative transcriptional activator n=1 Tax=Lenti... 108 5e-23 UniRef50_Q1QKQ8 Transcription antitermination protein nusG n=1 T... 108 6e-23 UniRef50_A7FC44 Transcriptional activator n=1 Tax=Yersinia pseud... 108 9e-23 UniRef50_A6L3Q7 Putative transcriptional regulator UpxY-like pro... 108 1e-22 UniRef50_B8IAM8 Transcription antitermination protein nusG n=2 T... 107 1e-22 UniRef50_Q2ST07 Transcription antitermination protein nusG n=4 T... 107 1e-22 UniRef50_A5CC98 Transcription antitermination protein nusG n=2 T... 107 1e-22 UniRef50_O84322 Transcription antitermination protein nusG n=14 ... 106 3e-22 UniRef50_B8IE36 NusG antitermination factor n=3 Tax=Methylobacte... 106 3e-22 UniRef50_C8WIA3 NusG antitermination factor n=1 Tax=Eggerthella ... 105 4e-22 UniRef50_B8IIP1 Transcription antitermination protein nusG n=2 T... 105 4e-22 UniRef50_Q7D1F8 Transcription antitermination protein n=1 Tax=Ag... 105 5e-22 UniRef50_C3RLT4 NusG antitermination factor n=2 Tax=Bacteria Rep... 105 5e-22 UniRef50_Q2RYZ3 Putative uncharacterized protein n=2 Tax=Salinib... 105 5e-22 UniRef50_C3MAS1 Putative uncharacterized protein n=1 Tax=Rhizobi... 104 7e-22 UniRef50_Q4A951 Transcription antitermination protein n=4 Tax=My... 104 7e-22 UniRef50_A4YU22 Transcription antitermination protein nusG n=1 T... 104 7e-22 UniRef50_UPI0001692BF2 putative transcription antiterminator n=1... 104 7e-22 UniRef50_A6E8J5 Transcription antiterminator n=1 Tax=Pedobacter ... 104 8e-22 UniRef50_C8WIE4 Transcription antitermination protein nusG n=1 T... 104 1e-21 UniRef50_O67757 Transcription antitermination protein nusG n=7 T... 103 2e-21 UniRef50_Q48MX6 Transcriptional activator RfaH n=1 Tax=Pseudomon... 103 2e-21 UniRef50_C2NS75 Transcription antitermination protein nusG n=2 T... 102 5e-21 UniRef50_C8PLY0 Transcription antitermination protein, NusG fami... 101 7e-21 UniRef50_C5CGE4 Transcription antitermination protein nusG n=1 T... 101 1e-20 UniRef50_B8I511 NusG antitermination factor n=6 Tax=Clostridium ... 101 1e-20 UniRef50_B8INV2 NusG antitermination factor n=1 Tax=Methylobacte... 100 1e-20 UniRef50_A6UA20 NusG antitermination factor n=1 Tax=Sinorhizobiu... 100 1e-20 UniRef50_D0I9V3 Putative uncharacterized protein n=1 Tax=Grimont... 100 2e-20 UniRef50_P29397 Transcription antitermination protein nusG n=12 ... 100 2e-20 UniRef50_C0ZGR2 Transcription antitermination protein nusG n=1 T... 100 2e-20 UniRef50_B7AH17 Putative uncharacterized protein n=1 Tax=Bactero... 100 2e-20 UniRef50_C6LL07 Putative transcription antiterminator n=3 Tax=Cl... 100 2e-20 UniRef50_A5IXI2 Transcription antitermination protein nusG n=1 T... 99 3e-20 UniRef50_Q7UWN7 Probable NusG-like protein-putative transcriptio... 100 3e-20 UniRef50_B0P702 Putative uncharacterized protein n=1 Tax=Anaerot... 99 5e-20 UniRef50_B0K4N5 Transcription antitermination protein nusG n=9 T... 99 5e-20 UniRef50_B8IEU5 Putative uncharacterized protein n=1 Tax=Methylo... 98 6e-20 UniRef50_A7Z6E4 Transcription antitermination protein nusG n=1 T... 97 1e-19 UniRef50_UPI000174528A NusG antitermination factor n=1 Tax=Verru... 97 2e-19 UniRef50_C4FB35 Putative uncharacterized protein n=1 Tax=Collins... 97 2e-19 UniRef50_B3PLY8 Transcription antitermination protein n=4 Tax=My... 96 3e-19 UniRef50_B9JXL7 Transcription antitermination protein nusG n=3 T... 96 3e-19 UniRef50_B5CXQ3 Putative uncharacterized protein n=1 Tax=Bactero... 96 3e-19 UniRef50_B6GCE7 Putative uncharacterized protein n=1 Tax=Collins... 96 3e-19 UniRef50_UPI00016C34F5 transcription antitermination protein nus... 96 5e-19 UniRef50_Q9EUG2 Actx protein n=1 Tax=Escherichia coli RepID=Q9EU... 95 6e-19 UniRef50_Q1VSS9 Transcription activator or transcription antiter... 95 1e-18 UniRef50_B0UIZ3 NusG antitermination factor n=2 Tax=Methylobacte... 94 1e-18 UniRef50_Q5LG31 Putative transcriptional regulator n=6 Tax=Bacte... 94 2e-18 UniRef50_B0MWZ3 Putative uncharacterized protein n=1 Tax=Alistip... 94 2e-18 UniRef50_A8S2H9 Putative uncharacterized protein n=1 Tax=Clostri... 93 3e-18 UniRef50_D1PRH1 Putative transcription termination factor NusG n... 93 3e-18 UniRef50_A7V7E7 Putative uncharacterized protein n=2 Tax=Bactero... 93 4e-18 UniRef50_A6X1C2 NusG antitermination factor n=1 Tax=Ochrobactrum... 91 1e-17 UniRef50_B0SHW0 Transcription antiterminator n=2 Tax=Leptospira ... 91 1e-17 UniRef50_B6GA74 Putative uncharacterized protein n=1 Tax=Collins... 91 1e-17 UniRef50_Q6MDM6 Transcription antitermination protein nusG n=1 T... 91 1e-17 UniRef50_A6TKC4 NusG antitermination factor n=1 Tax=Alkaliphilus... 90 2e-17 UniRef50_A6L7Z6 Putative transcriptional regulator UpxY-like pro... 90 3e-17 UniRef50_C3RM78 NusG antitermination factor n=2 Tax=Bacteria Rep... 90 4e-17 UniRef50_C9Y5P4 Transcriptional activator rfaH n=3 Tax=Enterobac... 90 4e-17 UniRef50_B1ZWG3 NusG antitermination factor n=1 Tax=Opitutus ter... 89 6e-17 UniRef50_A6DPM2 Transcription antitermination protein NusG n=1 T... 88 7e-17 Sequences not found previously or not previously below threshold: >UniRef50_C7M2W0 Transcription antitermination protein nusG n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7M2W0_ACIFD Length = 243 Score = 168 bits (427), Expect = 5e-41, Method: Composition-based stats. Identities = 35/176 (19%), Positives = 70/176 (39%), Gaps = 17/176 (9%) Query: 3 SWYLLYCKRGQLQRAQEHL---------ERQAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++C G R +++L E + PM + ++ G+R V +FP Sbjct: 67 EWYVVHCYSGYENRVRQNLATRIRSLGLEDRIFEVEIPMEDVTELKNGRRVKVQRKVFPG 126 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---- 109 Y+ V + + + I T G++ FV G+ P + + + + + + P Sbjct: 127 YVLVRAEMDDEVWSAIRNTPGITSFVGSGSKPVPLSRKEVEAMFSFATPEELRPQPQRRS 186 Query: 110 ---PYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 G+ V + EG F E + + + +L N+ +E + T+ K Sbjct: 187 TQEFEIGETVRVKEGPLADFVGEVAEVNADQLKLKVLFNIFGRETPVELDFTQVSK 242 >UniRef50_D2C1D2 NusG antitermination factor n=5 Tax=Gammaproteobacteria RepID=D2C1D2_DICD5 Length = 162 Score = 163 bits (414), Expect = 1e-39, Method: Composition-based stats. Identities = 116/162 (71%), Positives = 135/162 (83%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M++WYLLYCKRGQL RA+EHLERQ V CL+PMI LEKIVRGKRT VSEPLFPNYLFVEFD Sbjct: 1 MRAWYLLYCKRGQLLRAKEHLERQDVVCLSPMIALEKIVRGKRTEVSEPLFPNYLFVEFD 60 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITE 120 PE IHTTTI++TRGVSHFVRFG PA+VP VI L ++ VDP TP PGD+V ITE Sbjct: 61 PEHIHTTTISSTRGVSHFVRFGNLPALVPQQVIEDLQHHQCTTHVDPETPQPGDQVTITE 120 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G F G +AI+TEPDGEARSMLLLNL+NK+++ S+ N +FRK+ Sbjct: 121 GVFSGLEAIYTEPDGEARSMLLLNLLNKQVRQSIDNRQFRKV 162 >UniRef50_A5D5K3 Transcription antitermination protein nusG n=7 Tax=Bacteria RepID=A5D5K3_PELTS Length = 175 Score = 163 bits (412), Expect = 3e-39, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 69/172 (40%), Gaps = 11/172 (6%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY+++ G + + +LE++ L PM +I GK+ +FP Sbjct: 3 KKWYVVHTYSGYENKVKANLEKRIDSMNMEDKIFRILVPMEDEVEIKDGKKKVSKRKIFP 62 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQ-LSVYKPKDIVDPATPY 111 Y+ VE + T GV+ FV G+ P + A Q + ++ Sbjct: 63 GYVLVEMIMTDDSWYVVRNTPGVTGFVGSGSRPIPLNDAEARQIIRQMGVEEPRTRVDFT 122 Query: 112 PGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRKL 162 G+ + + G FE F E + E + +++++ +E + T+ K+ Sbjct: 123 VGENIRVISGPFENFIGQIEEINMEKSKVKVMISMFGRETPVELDFTQVEKI 174 >UniRef50_Q01SW9 Transcription antitermination protein nusG n=75 Tax=cellular organisms RepID=Q01SW9_SOLUE Length = 239 Score = 162 bits (411), Expect = 3e-39, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 63/174 (36%), Gaps = 13/174 (7%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQ----AV-----NCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY+++ G + QE L + L P + ++ GK+ ++P Sbjct: 66 KKWYIIHTYSGFENKVQESLRTRADAFGFADKIGQILIPTEEVVELRNGKKVTSKRLVYP 125 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQ---LSVYKPKDIVDPAT 109 Y+ VE + + T V+ FV G SP + + ++ + T Sbjct: 126 GYVLVEMEMNDALWHEVKNTPRVTGFVGGGNSPVPLSADEVNSILYRQASSAERPRPKMT 185 Query: 110 PYPGDKVIITEGAFEGFQAIFTEPDGEAR-SMLLLNLINKEIKHSVKNTEFRKL 162 D V I +G F F E + E +++ + + ++ + K+ Sbjct: 186 FEKNDSVRIIDGPFANFSGKVDEVNPERGTLRVMVTIFGRATPVELEFLQVEKV 239 >UniRef50_P0AFW1 Transcriptional activator rfaH n=162 Tax=Enterobacteriaceae RepID=RFAH_ECO57 Length = 162 Score = 161 bits (409), Expect = 5e-39, Method: Composition-based stats. Identities = 162/162 (100%), Positives = 162/162 (100%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD Sbjct: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITE 120 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITE Sbjct: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITE 120 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL Sbjct: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 >UniRef50_Q6A6K1 Transcription antitermination protein nusG n=3 Tax=Propionibacterium acnes RepID=Q6A6K1_PROAC Length = 303 Score = 160 bits (405), Expect = 2e-38, Method: Composition-based stats. Identities = 36/187 (19%), Positives = 68/187 (36%), Gaps = 27/187 (14%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+L+ G + +++L+ + + P + +I G R ++ P Sbjct: 117 EWYVLHTYSGMENKVKQNLDARVQNFNMEDYIFETVVPTEEVVEIRNGARRTITRVYLPG 176 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVI-----------------HQL 96 Y+ V D + T V+ FV +P + + + Sbjct: 177 YVLVRMDLTDDSWGIVRHTPSVTGFVGQSTTPIPLTFDEVVKMLTPSVVARVSRENADKT 236 Query: 97 SVYKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVK 155 S K K V+ A G+ V IT+G F G A TE + R L+ ++ + ++ Sbjct: 237 SSPKAKPKVEVADYEVGESVQITDGPFAGVPAQITEINTNNQRIKALVEILGRSTPVDLE 296 Query: 156 NTEFRKL 162 + K+ Sbjct: 297 FNQIEKI 303 >UniRef50_B9KYX2 Transcription antitermination protein nusG n=5 Tax=Bacteria RepID=B9KYX2_THERP Length = 198 Score = 159 bits (402), Expect = 3e-38, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 68/170 (40%), Gaps = 11/170 (6%) Query: 3 SWYLLYCKRGQLQRAQEHL---------ERQAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+L+ G + +++L + + PM +I G+R V +FP Sbjct: 27 EWYVLHTYSGYENKVRQNLLHRVETMDVADKVFEVVIPMQEEIEIRGGQRHTVQRKVFPG 86 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQ-LSVYKPKDIVDPATPYP 112 Y+ V + + T GV+ FV G P + A + K + T P Sbjct: 87 YVLVRMILDDESWHVVRNTPGVTGFVGVGNRPVPLDRAEAEAIIRGAKAEQPKVRMTLLP 146 Query: 113 GDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 GD V I +G F F+ + E D E + +L++ +E ++ + + Sbjct: 147 GDVVRIIDGPFTDFRGVVDEVDNEKGKVRVLVSFFGRETPVTLDFLQVER 196 >UniRef50_D0LJE5 Transcription antitermination protein nusG n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LJE5_HALO1 Length = 189 Score = 157 bits (398), Expect = 1e-37, Method: Composition-based stats. Identities = 43/172 (25%), Positives = 75/172 (43%), Gaps = 14/172 (8%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAV---------NCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G QR +E L+++AV L P + + ++V+GKR ++ FP Sbjct: 18 KWYVVHTHAGYEQRVRETLQQRAVALGFKDNIGEILVPTLNVMEVVKGKRKTSTKKFFPG 77 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---P 110 Y+FV+ + I T V+ FV G +P VP + I + + P Sbjct: 78 YIFVQMEFTDSVYHLIRNTPKVTGFVG-GNTPQPVPESEISVIHNTMSDNHSKPRPKVMF 136 Query: 111 YPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 GD V +T+G F F A E + + +L+ + + + T+ K Sbjct: 137 EQGDNVRVTDGPFASFTATVEEVKPDKQKLRVLVTIFGRATPVELDFTQVEK 188 >UniRef50_D1CD65 Transcription antitermination protein nusG n=5 Tax=Bacteria RepID=D1CD65_THET1 Length = 201 Score = 157 bits (398), Expect = 1e-37, Method: Composition-based stats. Identities = 31/171 (18%), Positives = 68/171 (39%), Gaps = 11/171 (6%) Query: 3 SWYLLYCKRGQLQRAQEHLE---------RQAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G + + L+ + + + P + +I GKR V + +FP Sbjct: 29 QWYVIHTYSGYEDKVKRDLQHRVETMGMSDRIRDIIVPTVEEIEIREGKRHKVQKKVFPG 88 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD-PATPYP 112 Y+ V + + T GV+ FV G P + + ++ ++ + Sbjct: 89 YVLVRMRMDDAAWNVVRYTPGVTGFVGSGTKPTPLDEKEVEKILQRMSEEPPKVKMSLRL 148 Query: 113 GDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRKL 162 G+ V I +G F F+ E + E + +L+++ + + + K+ Sbjct: 149 GEAVRIVDGPFTDFEGTVDEINEEKGKVKVLISIFGRPTPVELDFLQVEKI 199 >UniRef50_C1DDG1 RfaH n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DDG1_LARHH Length = 172 Score = 156 bits (396), Expect = 2e-37, Method: Composition-based stats. Identities = 51/163 (31%), Positives = 81/163 (49%), Gaps = 2/163 (1%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 WYL++ K Q Q A ++L++Q C PM+ EK+ +G+ E LFP YLF+ Sbjct: 9 MHWYLVHTKPRQEQCALQNLQQQGYQCYLPMLATEKLRQGRLVVSEEALFPRYLFIRLGL 68 Query: 62 --EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIIT 119 I +TRGV+ VRFG PA + +I +L + G++V +T Sbjct: 69 GQSDKSWAPIRSTRGVNQLVRFGTEPARIDDGLIERLRGHDAARANPEPLFRTGERVRLT 128 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 +G F G + I+ DGE+R M+L+ + + + V RK+ Sbjct: 129 DGPFAGIEGIYQMTDGESRVMVLIEFLTRPVVARVAPGSLRKV 171 >UniRef50_A3EVT3 Transcription antitermination protein nusG n=4 Tax=Bacteria RepID=A3EVT3_9BACT Length = 184 Score = 154 bits (390), Expect = 8e-37, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 76/174 (43%), Gaps = 13/174 (7%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAV---------NCLAPMITLEKIVRGKRTAVSEPLFP 52 ++WY+++ G R + +E + V + P+ + ++ GK+ S +FP Sbjct: 11 KNWYVIHTYAGFENRVKTSIEERVVLKDLADIVGQVVVPIQNVTELKEGKKKVSSRKVFP 70 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT--- 109 Y+ VE +P I AT V+ F+ G +P + S + +L P+ Sbjct: 71 GYVLVEMEPTEEAIQFILATPKVTGFLGNGTTPIPMSSREVSELFDRIESGTAMPSPSQH 130 Query: 110 PYPGDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRKL 162 + V IT+G F+GF + +E D + +L+++ ++ + + +L Sbjct: 131 FSESETVRITDGPFQGFSGMISEVDNDHGKLKVLVSIFGRQTPVELDFLQVERL 184 >UniRef50_Q1AU17 Transcription antitermination protein nusG n=1 Tax=Rubrobacter xylanophilus DSM 9941 RepID=Q1AU17_RUBXD Length = 176 Score = 154 bits (389), Expect = 1e-36, Method: Composition-based stats. Identities = 32/176 (18%), Positives = 67/176 (38%), Gaps = 14/176 (7%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQ----AVNCL-----APMITLEKIVRGKRTAVSEPLF 51 M+ WY++ G + + LER+ + P + +I GK+ + F Sbjct: 1 MKKWYVVNTYSGHENKVRATLERRIESLGLQRYFGEIRIPTEQVIEIKNGKKVPTTHRQF 60 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDP---- 107 P Y+ V + I T GV+ V G P + A + +L + + + Sbjct: 61 PGYILVNVEMNDDTWRVIRQTPGVTQIVGSGDKPTPLSRAEVERLLHPEEPEKREKVKAT 120 Query: 108 ATPYPGDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRKL 162 G+ V + G F ++ + +++ +L+++ +E + + KL Sbjct: 121 VDFDIGETVRVVAGPLSDFTGTISDINVDQSKVKVLVSIFGRETPVELSFNQVAKL 176 >UniRef50_Q9KGE7 Transcription antitermination protein nusG n=16 Tax=Bacteria RepID=NUSG_BACHD Length = 178 Score = 154 bits (389), Expect = 1e-36, Method: Composition-based stats. Identities = 33/176 (18%), Positives = 68/176 (38%), Gaps = 15/176 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFP 52 ++WY+++ G + + +LE++ + P+ ++ GK VS +FP Sbjct: 3 KNWYVVHTYSGYENKVKTNLEKRVESMDMTDKIFRVMVPVEEETEVKNGKSKQVSRKVFP 62 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRF---GASPAIVPSAVIHQ--LSVYKPKDIVDP 107 Y+ VE + T GV+ FV G+ P + + + ++ Sbjct: 63 GYVLVEMVMTDDSWYVVRNTPGVTGFVGSAGAGSKPTPLLPEEVDAILRQMGMQEERQVE 122 Query: 108 ATPYPGDKVIITEGAFEGFQAIFTEPDGEAR-SMLLLNLINKEIKHSVKNTEFRKL 162 + V + EG F F E + R + +N+ +E ++ T+ K+ Sbjct: 123 IDFQLKESVKVKEGPFANFIGTIEEIQLDKRKLKVHVNMFGRETPVELEFTQIEKI 178 >UniRef50_C7RAP1 Transcriptional acivator RfaH n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RAP1_KANKD Length = 167 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 67/161 (41%), Positives = 97/161 (60%), Gaps = 1/161 (0%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 +SWYL+ K Q RA EHL+ Q +NC+ P++ +E+I+RGKR EPLFP YLFVE Sbjct: 6 KSWYLINSKPKQELRALEHLKNQEINCVLPVLEVERIIRGKRQKAIEPLFPGYLFVELQT 65 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK-DIVDPATPYPGDKVIITE 120 + I +TRGV FVRFG P VP +V+ L + ++ P GDKVIIT+ Sbjct: 66 NGQGWSKIRSTRGVRDFVRFGGVPGRVPDSVLEHLLILDTSFTPIETNAPGAGDKVIITD 125 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 G F+ + +F +GE RS++LL ++ K + ++N + RK Sbjct: 126 GPFKDLEGVFKISNGEKRSIVLLTILGKVTEMELENKQLRK 166 >UniRef50_A4WZX9 Transcription antitermination protein nusG n=1 Tax=Rhodobacter sphaeroides ATCC 17025 RepID=A4WZX9_RHOS5 Length = 174 Score = 153 bits (387), Expect = 2e-36, Method: Composition-based stats. Identities = 50/160 (31%), Positives = 76/160 (47%), Gaps = 2/160 (1%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WYL+ K + A+ +L RQ + +P K + + LFP YLFV F+PE Sbjct: 13 WYLVQTKPNAFRIAERNLLRQDFSVFSPTQNQTKKHGTRFRHTVQQLFPGYLFVRFNPEF 72 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD--IVDPATPYPGDKVIITEG 121 INAT GVS V FG P+ VP A+I L D ++ P GD+V I G Sbjct: 73 PQWRAINATYGVSRLVTFGNIPSPVPHALIAGLRQRCANDGTLLPPEQLSLGDRVRIISG 132 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 F + A + + + R +LL+++ + K ++ +K Sbjct: 133 PFADYVATVEQIEPDKRVWILLDILGGQTKTQIQIAALQK 172 >UniRef50_A0KGQ9 Transcriptional activator RfaH n=3 Tax=Aeromonadaceae RepID=A0KGQ9_AERHH Length = 183 Score = 153 bits (386), Expect = 3e-36, Method: Composition-based stats. Identities = 69/165 (41%), Positives = 99/165 (60%), Gaps = 3/165 (1%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M+ WYL YCK + RA+ HLE Q + PM+ +EK+ RGKR V EP+FPNYLF+ D Sbjct: 18 MKKWYLAYCKPKEEARARAHLEAQGIESYYPMVEIEKLRRGKRVPVREPMFPNYLFIYVD 77 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---PYPGDKVI 117 E + T+ +TRG+S + FG + S +++QL D + P GDKV+ Sbjct: 78 LEEVTPVTLKSTRGISRIIHFGREWTSISSQLVYQLMSRDDSDEARASYASLPTQGDKVL 137 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 I G GF+AI+ EPDG+ R++LL++L+N+E S N FR+L Sbjct: 138 IESGPLAGFEAIYLEPDGDKRAILLVSLLNQETSSSFDNQSFRRL 182 >UniRef50_Q82X31 Putative transcriptional activator n=1 Tax=Nitrosomonas europaea RepID=Q82X31_NITEU Length = 165 Score = 153 bits (386), Expect = 3e-36, Method: Composition-based stats. Identities = 58/163 (35%), Positives = 89/163 (54%), Gaps = 3/163 (1%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 WYL++ K Q + A ++L++Q C PM+ +EK+ G T V EPLFP YLF++ + Sbjct: 1 MHWYLVHTKPKQEKCAFQNLQQQGYRCYLPMLPVEKLHLGNLTVVDEPLFPRYLFIQLEQ 60 Query: 62 EV--IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT-PYPGDKVII 118 I +TRGV+ V FG+ PA + +I L + + P PG++V + Sbjct: 61 GDSAKSWVPIRSTRGVNRLVCFGSEPARIDDILIDLLRMQEASFQHKPERLFKPGERVRL 120 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 TEGAF G + I+ +GE R M+L+ L++K + V T RK Sbjct: 121 TEGAFAGIEGIYQMAEGERRVMVLIELLSKPVAMRVSPTSLRK 163 >UniRef50_D1NBR2 Transcription antitermination protein nusG n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1NBR2_9BACT Length = 193 Score = 153 bits (386), Expect = 3e-36, Method: Composition-based stats. Identities = 31/178 (17%), Positives = 69/178 (38%), Gaps = 19/178 (10%) Query: 3 SWYLLYCKRGQLQRAQEHLERQ--------AVNCLAPMITLEKIVRGKRTAVSEPLFPNY 54 W++++ G + ++ + RQ P + ++ +GK+T + LFP Y Sbjct: 14 QWFVIHTLSGHENKVRDKILRQLQTGDQVPVYEAFIPTEKVAEVRQGKKTTTTRKLFPGY 73 Query: 55 LFVEFDP-------EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKP---KDI 104 ++V D I + +GV F+ P + + + + ++ Sbjct: 74 IWVRMDLYDDLGMINEKAWYFIRSVQGVLGFLGGDNKPTALTESEVEDIMRPAQAGAPEV 133 Query: 105 VDPATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 G+ V I +GAFE F+ E D E + L++++ + ++ + + Sbjct: 134 KPKIAFEVGEVVRIKDGAFENFEGAIQEIDNERGKLKLMVSIFGRSTPVELEFWQVER 191 >UniRef50_B0S060 Transcription antitermination protein nusG n=5 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S060_FINM2 Length = 193 Score = 153 bits (386), Expect = 3e-36, Method: Composition-based stats. Identities = 34/170 (20%), Positives = 63/170 (37%), Gaps = 10/170 (5%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G + + ++E+ + P V G + +FP Sbjct: 24 KWYVVHTYSGHEGKVKVNIEKMVENRGYIDDIFEVVVPTEEYVSEVGGAKKLKERKIFPG 83 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPG 113 Y+FV+ + + TRGV+ FV + P V I + ++ G Sbjct: 84 YVFVKMTITDVSWYLVRNTRGVTGFVGPESKPVAVSEKEIQKFALKNQSYSKKEIDVNVG 143 Query: 114 DKVIITEGAFEGFQAIFTEPDGEARS-MLLLNLINKEIKHSVKNTEFRKL 162 D V I GAF I E + E +L++L ++ + + K+ Sbjct: 144 DNVNIVSGAFSDQVGIIEEINTEKAICKVLISLFGRDTSVEISFDDIEKI 193 >UniRef50_B4R8J9 Transcription antitermination protein nusG n=157 Tax=Proteobacteria RepID=B4R8J9_PHEZH Length = 189 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 67/173 (38%), Gaps = 13/173 (7%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ ++ E + QA L P + +I RG++ FP Sbjct: 16 KWYIVHAYSNFEKKVAESIREQARTQGLEENFSEILVPTEDVVEIRRGRKVNSERKFFPG 75 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---P 110 Y+ V+ + I T V+ F+ G+ P V + ++ + + P Sbjct: 76 YVLVKMEMTDEAYHLIKNTPKVTGFLGSGSKPIPVSEKEVERIVGAIEEGVERPKPTITF 135 Query: 111 YPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRKL 162 G++V +T+G F F + D E R + +++ + ++ + K+ Sbjct: 136 EIGEQVRVTDGPFASFNGSVEQVDEERARLRVTVSIFGRATPVELEYGQVEKI 188 >UniRef50_A9ND88 Transcriptional activator RfaH n=6 Tax=Coxiella burnetii RepID=A9ND88_COXBR Length = 167 Score = 152 bits (385), Expect = 3e-36, Method: Composition-based stats. Identities = 53/159 (33%), Positives = 78/159 (49%), Gaps = 2/159 (1%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 WYL+Y K Q + A+E+LERQ P I + + G ++EPLFP YLF+ + + Sbjct: 6 DWYLIYTKPRQERIAEENLERQGYRIYLPFIQVNRRRLGCYQLITEPLFPRYLFILLNID 65 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDP--ATPYPGDKVIITE 120 + I +TRGVS VRFG PA VP + L + V P + G +V I + Sbjct: 66 KDNWGPIRSTRGVSALVRFGGIPAKVPPDFVQFLKNNETSASVPPKVSLFQKGQRVQIID 125 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 G G++ +F G R LLL+++ K + V Sbjct: 126 GVMAGYEGVFEMYSGAKRVTLLLDMVGKVTRVEVPLDSV 164 >UniRef50_Q9CBK0 Transcription antitermination protein nusG n=4 Tax=Actinomycetales RepID=NUSG_MYCLE Length = 228 Score = 152 bits (384), Expect = 4e-36, Method: Composition-based stats. Identities = 30/191 (15%), Positives = 68/191 (35%), Gaps = 31/191 (16%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G + + +LE + P + +I G+R V+ + P Sbjct: 38 DWYVIHSYAGYENKVKANLETRVQNLDVGDCIFQVEVPTEEVTEIKNGQRRLVNRKVLPG 97 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKP------------ 101 Y+ V D + T GV+ FV + P+ + + + + Sbjct: 98 YILVRMDLTDDSWAAVRNTPGVTGFVGATSRPSALALDDVVKFLLPSGSAKKDAKGAVST 157 Query: 102 ---------KDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIK 151 + + G+ V + +G F A +E + E + +L+++ +E Sbjct: 158 AAAAEAGGLERSIIEVDYEVGESVTVMDGPFATLPATISEVNAEQQKLKVLVSIFGRETP 217 Query: 152 HSVKNTEFRKL 162 + ++ K+ Sbjct: 218 VELTFSQVSKI 228 >UniRef50_A1WZB7 Transcription antitermination protein nusG n=1 Tax=Halorhodospira halophila SL1 RepID=A1WZB7_HALHL Length = 175 Score = 152 bits (384), Expect = 4e-36, Method: Composition-based stats. Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 2/160 (1%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WYL+Y K Q +RA +L+ Q C PM + + + V EP+FP YLF+ + Sbjct: 15 WYLVYSKPRQEERAWWNLDHQGFRCFLPMARFRRRRQRRYQTVIEPMFPRYLFIRLAAGL 74 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD--PATPYPGDKVIITEG 121 + I +T GVS VRFG PA VP ++ + D P PG++V + +G Sbjct: 75 EDWSPIRSTTGVSGLVRFGTWPARVPDGLVDTIRARIEDGHCDLAPEPLQPGERVRVLDG 134 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 F+ ++ IF + R M+LL++ + +V + + Sbjct: 135 PFQSYEGIFRASRSDERVMILLDVAGQHTTLTVSQHQIER 174 >UniRef50_Q0AUG6 Transcription antitermination protein nusG n=33 Tax=Bacteria RepID=Q0AUG6_SYNWW Length = 203 Score = 152 bits (384), Expect = 5e-36, Method: Composition-based stats. Identities = 27/172 (15%), Positives = 63/172 (36%), Gaps = 12/172 (6%) Query: 3 SWYLLYCKRGQLQRAQ---------EHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G + + +++ + + P + GKR ++ +FP Sbjct: 32 DWYVVHTYSGYENKIKVDLSKRVESMNMQDKIFEVIIPEEQEVEYKNGKRKVTNKRIFPG 91 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA--TPY 111 Y+ V + + T GV+ FV G+ P + I ++ Sbjct: 92 YVIVNMIMDDDSWYVVRHTPGVTGFVGSGSKPIPLHQEEIDKIRRQMGLMEKKTMIIDIE 151 Query: 112 PGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRKL 162 G+ + + G F F+ + E E + + +++ +E + + K+ Sbjct: 152 IGESIRVKTGPFANFEGVVRELLPEKGKIRVNISMFGRETPVELDYEQIEKI 203 >UniRef50_A6LPP9 Transcription antitermination protein nusG n=27 Tax=Clostridiales RepID=A6LPP9_CLOB8 Length = 181 Score = 151 bits (382), Expect = 7e-36, Method: Composition-based stats. Identities = 33/170 (19%), Positives = 64/170 (37%), Gaps = 13/170 (7%) Query: 3 SWYLLYCKRGQLQRAQEHLER----QAVNCLA-----PMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G + + +LE+ + + L PM + + GK+ + FP Sbjct: 14 RWYVVHTYSGYENKVKANLEKAIENRNLEALIHDIQVPMEEVVEEKDGKQKVSLKKKFPG 73 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPG 113 Y+ V+ + TRGV+ FV G+ P + + + V + + G Sbjct: 74 YVLVKMLMGDEAWYVVRNTRGVTGFVGPGSKPVPLSDEEVESMGVLE---VPVEIDLEVG 130 Query: 114 DKVIITEGAFEGFQAIFTEPDGEAR-SMLLLNLINKEIKHSVKNTEFRKL 162 + + I G A E + R L+ + +E + + KL Sbjct: 131 ESIRIISGPLRDSVATIQEIIPDKRKVKALVEMFGRETLAELDFNQVEKL 180 >UniRef50_A6FV14 Transcription antitermination protein nusG n=2 Tax=Rhodobacteraceae RepID=A6FV14_9RHOB Length = 177 Score = 151 bits (381), Expect = 8e-36, Method: Composition-based stats. Identities = 46/159 (28%), Positives = 69/159 (43%), Gaps = 2/159 (1%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 WYL+ K + A +L+RQ+ PM + + GK +PLFP Y+FV D Sbjct: 8 RWYLVQFKPNSHKIAARNLQRQSFQTFLPMQDVTRRRAGKFHTAPQPLFPGYMFVSLDTI 67 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD--IVDPATPYPGDKVIITE 120 INAT GVS V P VP +++ L D ++ P T PG++V + Sbjct: 68 RGPWRQINATLGVSKLVSVAGRPQPVPDTLVNALLERCDDDGKLLPPETFSPGEQVTLRS 127 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 G F F A + + R +LL + + + V Sbjct: 128 GPFASFVATVEKMQPDRRVWVLLEFMGQATRIQVDADIL 166 >UniRef50_P0AA01 Transcription antitermination protein nusG n=217 Tax=Proteobacteria RepID=NUSG_ECOL6 Length = 181 Score = 151 bits (381), Expect = 9e-36, Method: Composition-based stats. Identities = 28/174 (16%), Positives = 55/174 (31%), Gaps = 14/174 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAV---------NCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY++ G R L + P + +I G+R FP Sbjct: 7 KRWYVVQAFSGFEGRVATSLREHIKLHNMEELFGEVMVPTEEVVEIRGGQRRKSERKFFP 66 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFV-RFGASPAIVPSAVIHQLSVYK---PKDIVDPA 108 Y+ V+ + + V F+ PA + + + Sbjct: 67 GYVLVQMVMNDASWHLVRSVPRVMGFIGGTSDRPAPISDKEVDAIMNRLQQVGDKPRPKT 126 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 PG+ V + +G F F + E D E R + +++ + + ++ K Sbjct: 127 LFEPGEMVRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRATPVELDFSQVEK 180 >UniRef50_D0WPF7 Transcription antitermination protein nusG n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WPF7_9ACTO Length = 274 Score = 150 bits (380), Expect = 1e-35, Method: Composition-based stats. Identities = 39/185 (21%), Positives = 66/185 (35%), Gaps = 26/185 (14%) Query: 3 SWYLLYCKRGQLQRAQEHLE---------RQAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+L+ G +R ++ LE PM + +I RG+R VS P Sbjct: 88 RWYVLHTYSGYEKRVKQDLEVRMHSMNMEDYIFQIEVPMEEVFEIRRGQRKLVSRVRMPG 147 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL----------------S 97 Y+ + D + +T GV+ FV G +P + + + Sbjct: 148 YVLIRMDLTDDSWRVVQSTNGVTGFVGNGRTPVALSENEVVSMLTPVIEAEAAAEAVAAG 207 Query: 98 VYKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKN 156 + GD V +T + G A +E D R +L+ L+ +E + Sbjct: 208 KAASPTPATLSPYAVGDAVTLTSEPWAGMPATVSEVDAANQRLTVLMTLVGQETPVELSF 267 Query: 157 TEFRK 161 + RK Sbjct: 268 NQVRK 272 >UniRef50_P27309 Transcription antitermination protein nusG n=58 Tax=Bacteria RepID=NUSG_STRVG Length = 299 Score = 150 bits (379), Expect = 1e-35, Method: Composition-based stats. Identities = 35/188 (18%), Positives = 67/188 (35%), Gaps = 29/188 (15%) Query: 3 SWYLLYCKRGQLQRAQEHLERQ---------AVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G +R + +LE++ P + +I G+R V + P Sbjct: 111 EWYVIHTYAGYEKRVKANLEQRAVSLNVEEFIYQAEVPEEEIVQIKNGERKNVRQNKLPG 170 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKP------------ 101 Y+ V D + T GV+ FV P + I ++ + Sbjct: 171 YVLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAQEKAAKAAAEEA 230 Query: 102 -------KDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHS 153 K ++ GD V +T+G F QA E + + + L+ + +E Sbjct: 231 GLPAPAVKRTIEVLDFEVGDSVTVTDGPFATLQATINEINPDSKKVKGLVEIFGRETPVE 290 Query: 154 VKNTEFRK 161 + + +K Sbjct: 291 LSFDQIQK 298 >UniRef50_Q4K6G2 Transcriptional activator RfaH n=2 Tax=Pseudomonadaceae RepID=Q4K6G2_PSEF5 Length = 239 Score = 150 bits (379), Expect = 1e-35, Method: Composition-based stats. Identities = 58/159 (36%), Positives = 88/159 (55%), Gaps = 3/159 (1%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WYL+ CK Q RA+E+L RQ +C P E++V+G+R + +E LFP YLF+ + Sbjct: 84 WYLVQCKPRQDLRAEENLRRQGFHCYRPQRGCERVVQGRRQSGTESLFPGYLFIALEH-D 142 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEGAF 123 + +TRGV+ V F P VP ++I L +D + PY G +V ITEG F Sbjct: 143 ASWAPLRSTRGVNRLVAFNGQPLAVPVSLIESLRQRVTD--MDTSLPYKGTRVCITEGCF 200 Query: 124 EGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 +AIF G+ R +LLL L+N++ + + + RK+ Sbjct: 201 ADLEAIFESSIGDERVVLLLTLLNQQRRIELPLSSIRKI 239 >UniRef50_Q7MMR1 Transcription antiterminator n=58 Tax=Vibrionales RepID=Q7MMR1_VIBVY Length = 168 Score = 150 bits (379), Expect = 2e-35, Method: Composition-based stats. Identities = 73/165 (44%), Positives = 105/165 (63%), Gaps = 5/165 (3%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M+ WYLLYCKRG+ RA++HLE Q V C P I +EKI+RGKR SEPLFP+Y+FV FD Sbjct: 1 MKKWYLLYCKRGEQIRAKQHLENQGVECFYPTIEVEKILRGKRQIKSEPLFPSYIFVRFD 60 Query: 61 PE-VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD----PATPYPGDK 115 E TT+ +TRGV FV+FGA P + +I++L + + + P PGD Sbjct: 61 FEIGPTFTTVRSTRGVVDFVKFGAHPKELQGDLIYELKLLEQEGHQSALQGSNLPKPGDS 120 Query: 116 VIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 + + G F G +AIF E DGE RS++L+ +I++ + S++N++ Sbjct: 121 IKVKSGQFAGIEAIFQEQDGETRSIMLVKMISQTVPVSIENSDLE 165 >UniRef50_Q5HRL6 Transcription antitermination protein nusG n=212 Tax=Bacilli RepID=NUSG_STAEQ Length = 182 Score = 149 bits (377), Expect = 2e-35, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 66/175 (37%), Gaps = 14/175 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLER---------QAVNCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY ++ G + +++LE+ Q + P ++ GK + + FP Sbjct: 8 KRWYAVHTYSGYENKVKKNLEKRVESMNMTEQIFRVVIPEEEETQVKDGKAKKLVKKTFP 67 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRF---GASPAIVPSAVIHQLSVYKP-KDIVDPA 108 Y+ VE + T GV+ FV G+ P + + + K+ Sbjct: 68 GYVLVELIMTDESWYVVRNTPGVTGFVGSAGAGSKPNPLLPEEVRFILKQMGLKEKTIDV 127 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRKL 162 G++V I G F E + + + +L+++ +E V+ + KL Sbjct: 128 ELDVGEQVRIQSGPFANQIGEVQEIEADKFKLTVLVDMFGRETPVEVEFDQIEKL 182 >UniRef50_B1I1L1 Transcription antitermination protein nusG n=3 Tax=Firmicutes RepID=B1I1L1_DESAP Length = 178 Score = 149 bits (377), Expect = 3e-35, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 72/175 (41%), Gaps = 14/175 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFP 52 + W++++ G + + +LE++ + P+ ++ GKR +FP Sbjct: 3 KQWFVVHTYSGYENKVKANLEKRIESMSMEDKIFRIVVPVEDEIEVKGGKRKISKRKIFP 62 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRF---GASPAIVPSAVI-HQLSVYKPKDIVDPA 108 Y+ VE + + T GV+ FV G+ P + A +S + + Sbjct: 63 GYVMVEMILDDDSYRVVRNTPGVTGFVGSVGIGSKPIPLTDAEANQIISQMEGDEPRIRI 122 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRKL 162 PG+KV + G FE F + + E + +++++ +E ++ + K+ Sbjct: 123 DLVPGEKVRVMAGPFENFIGTVDDVNYEKAKIRVMISMFGRETPIELEYFQIEKV 177 >UniRef50_Q2LQ92 Transcription antitermination protein nusG n=4 Tax=Proteobacteria RepID=Q2LQ92_SYNAS Length = 176 Score = 149 bits (376), Expect = 3e-35, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 65/170 (38%), Gaps = 13/170 (7%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G + ++ L+ + + L P + ++V G++ FP Sbjct: 4 KWYVVHTYSGFESKVKQSLQERIEAAGMQARFSDILIPEEDVVELVSGEKKTSKRKFFPG 63 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---P 110 Y+ V+ + + + T V+ F+ P+ +P + L + + P Sbjct: 64 YILVKMELDDDTWHLVKDTPKVTGFIGSREKPSPIPDKDVELLKTRIDEGTLKPKPKFKF 123 Query: 111 YPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEF 159 GD V I +G F F + E E + +++++ + + + Sbjct: 124 EVGDHVTIIDGPFTNFDGVIDEVKAEKGKLRVIVSIFGRPTPVELDFIQV 173 >UniRef50_A6F1J5 Transcriptional activator RfaH n=2 Tax=Marinobacter RepID=A6F1J5_9ALTE Length = 163 Score = 149 bits (376), Expect = 4e-35, Method: Composition-based stats. Identities = 57/160 (35%), Positives = 81/160 (50%), Gaps = 1/160 (0%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 +WY L K Q RA HL+ Q + C P IT+EKI GKRT EPLFP YLFV + Sbjct: 1 MTWYALQHKPSQGDRALTHLQNQDIACFYPKITVEKIKAGKRTKQLEPLFPGYLFVNLEQ 60 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEG 121 + +TRG+ V F PA +P VI + + + PG V + EG Sbjct: 61 TDPMWAKLRSTRGILRIVSFANKPAAIPDDVIQHIKDSLHT-VAEQGGIKPGQAVELDEG 119 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 F+G +AIF DGE R+++L++ + K+ V + + Sbjct: 120 PFKGIEAIFQAYDGEERAIVLISFMQKQQTVKVPLSTLHR 159 >UniRef50_Q1QVL5 Transcription antitermination protein nusG n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QVL5_CHRSD Length = 182 Score = 148 bits (375), Expect = 5e-35, Method: Composition-based stats. Identities = 56/163 (34%), Positives = 86/163 (52%), Gaps = 4/163 (2%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 WY++ CK G+ RA EHL Q P++ ++K R K ++EPLFP+YLF+ D Sbjct: 18 RWYVVQCKGGESFRAGEHLTNQGYRVFHPVLEVQKKRRNKLVWIAEPLFPHYLFIHLDRV 77 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT----PYPGDKVII 118 + I +TRGV V FG P VP A+I L+ D + PG+ V I Sbjct: 78 ASNWRPIRSTRGVLKLVGFGDEPLPVPDALIETLAARAHLDEASRTSGNAYFRPGEIVEI 137 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 TEG F+ QA+F G+ R+++LLN+++ + + + R+ Sbjct: 138 TEGPFQALQAVFDTQQGDERAIVLLNMLHHQQRLELPVGHLRR 180 >UniRef50_Q9CK84 Transcription antitermination protein nusG n=81 Tax=Bacteria RepID=NUSG_PASMU Length = 183 Score = 148 bits (375), Expect = 5e-35, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 62/174 (35%), Gaps = 14/174 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHL---------ERQAVNCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY+L G R L E Q L P + + V GKR FP Sbjct: 8 KRWYVLQAFSGFEGRVATTLREYIKLHQMEDQFGEVLVPTEEVVENVAGKRRKSERKFFP 67 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFV-RFGASPAIVPSAVIHQLSVYKPKDIVDP---A 108 Y+ V+ + + + V F+ PA + ++ + P Sbjct: 68 GYVLVQMEMNDETWHLVRSVPRVMGFIGGTADKPAPISQREADRILNRLQESSEKPRHRK 127 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 PG++V +TEG F F E D E R + +++ + ++ ++ K Sbjct: 128 EFQPGEEVRVTEGPFADFNGTVEEVDYEKGRLKVSVSIFGRATPVELEFSQVEK 181 >UniRef50_Q1WST1 Transcription antitermination protein nusG n=55 Tax=Firmicutes RepID=Q1WST1_LACS1 Length = 186 Score = 148 bits (375), Expect = 5e-35, Method: Composition-based stats. Identities = 39/176 (22%), Positives = 64/176 (36%), Gaps = 15/176 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQ---------AVNCLAPMITLEKI-VRGKRTAVSEPLF 51 + WY+L+ G + +E+LE + + P + GK F Sbjct: 10 KKWYVLHTYAGYENKVKENLESRATSMGMEDYIFRVVVPEEEKHETTKTGKEKVEKLKTF 69 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFV---RFGASPAIVPSAVIHQLSVYKPKDIVDPA 108 P Y+ VE + T GV+ FV G+ PA + I+ + Sbjct: 70 PGYVLVEMVMTDQSWYVVRNTPGVTGFVGSHGSGSKPAPLLDEEINHILHELGISSRHSN 129 Query: 109 -TPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRKL 162 GD V I +GAF G TE D E + + +++ +E + + KL Sbjct: 130 FDAEVGDAVTIIDGAFSGLVGKITEIDTEKMKLKVDIDMFGRETAAELNYDQVDKL 185 >UniRef50_A3WUF1 Transcriptional antitermination protein, putative n=1 Tax=Nitrobacter sp. Nb-311A RepID=A3WUF1_9BRAD Length = 170 Score = 148 bits (374), Expect = 6e-35, Method: Composition-based stats. Identities = 42/163 (25%), Positives = 67/163 (41%), Gaps = 4/163 (2%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 Q WY++ +A HL RQ P + + + PLFP YLFV D Sbjct: 6 QQWYVVQTHPHAEGKAAAHLRRQGFEVYLPRYARRRRHARRVDITASPLFPRYLFVAIDL 65 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYP----GDKVI 117 I +T GV++ V G PA VP V+ +L + P GD V Sbjct: 66 VHQRWRAIRSTVGVTNLVYSGDEPAPVPDDVVRRLKQREDSKGCVQLDLAPRFSAGDTVR 125 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 + +GAF +F R ++LL+L+ ++++ ++ Sbjct: 126 VVDGAFSDCLGLFESMSDGERVLVLLDLLGRKVRVTMDIDTIE 168 >UniRef50_B8DVU5 Transcription antitermination protein nusG n=21 Tax=Bifidobacteriaceae RepID=B8DVU5_BIFA0 Length = 330 Score = 148 bits (373), Expect = 7e-35, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 68/185 (36%), Gaps = 25/185 (13%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+L+ G +R + ++E + PM +EK + V+ P Sbjct: 144 KWYVLHTYSGYEKRVKSNIESRVQSFGLEDTIFQVEVPMEEVEKHTEKGKKVVTRVRVPG 203 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYK------------- 100 Y+ + P+ + T GV+ FV PA + + + Sbjct: 204 YVLIRMYPDENARRIVRETEGVTGFVGPSREPAPLSRKEVVSMMAPMIASHALKEAGDKP 263 Query: 101 --PKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDG-EARSMLLLNLINKEIKHSVKNT 157 K + GD+V +T+G F A+ ++ + + +L+++ ++ + Sbjct: 264 AAAKKRTLEVSYKVGDQVTVTDGPFTSMSAVVSDVEPATQKLTVLVSIFGRDTPVELGFD 323 Query: 158 EFRKL 162 + ++L Sbjct: 324 QVQRL 328 >UniRef50_Q0ACI7 Transcription antitermination protein nusG n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0ACI7_ALHEH Length = 177 Score = 148 bits (373), Expect = 8e-35, Method: Composition-based stats. Identities = 53/165 (32%), Positives = 86/165 (52%), Gaps = 4/165 (2%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 ++WYL+Y K Q + A+++L RQ + P + + K +R V EP+FP YLFVE D Sbjct: 13 RAWYLIYTKPRQEEAARDNLGRQGFHAWLPRVRVVKRRGTRRVPVVEPMFPRYLFVELDS 72 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIV----DPATPYPGDKVI 117 + I++T GV+ VRFG PA VP ++ L +D + P GD V Sbjct: 73 AYQDWSPISSTLGVTSLVRFGGVPAKVPGPLVAALQARADEDDICDLSARQQPRAGDTVR 132 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 + GAF G++A+F G R ++LL + K+ + ++ + + Sbjct: 133 VAHGAFAGYEAVFQARSGRERVLVLLEVAGKQSRVTLPADDIDPV 177 >UniRef50_C8WBL1 Transcription antitermination protein nusG n=7 Tax=Sphingomonadales RepID=C8WBL1_ZYMMN Length = 179 Score = 148 bits (373), Expect = 8e-35, Method: Composition-based stats. Identities = 33/177 (18%), Positives = 66/177 (37%), Gaps = 16/177 (9%) Query: 1 MQSWYLLYCKRGQLQRAQEHL----ERQAVN-----CLAPMITLEKIVRGKRTAVSEPLF 51 M WY+++ G + +E + ER + P ++ RGK+ AV F Sbjct: 1 MSRWYIIHAYSGFENKVKEAVAAEAERLGLQPLVEAIEVPTEQAVEVRRGKKVAVERKCF 60 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK------DIV 105 P Y+ + + + T V+ F+ F P + A + +K + Sbjct: 61 PGYVLAKLNMNEDVYHLVKNTPKVTGFLGFSGKPQPISDAEAEHILNHKAEAEVAGKKAQ 120 Query: 106 DPATPYPGDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRK 161 GD+V + EG F F + + D AR + +++ + ++ + + Sbjct: 121 IKVDFEIGDQVKVLEGPFASFNGVVEDLDFDRARVKVSVSIFGRATPVELEFEQVER 177 >UniRef50_C8XBG0 Transcription antitermination protein nusG n=4 Tax=Bacteria RepID=C8XBG0_NAKMY Length = 306 Score = 147 bits (372), Expect = 9e-35, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 66/184 (35%), Gaps = 24/184 (13%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G + + +LE + P + +I G+R V ++P Sbjct: 123 EWYVVHSYAGYENKVKTNLETRIKSLDMEDYIFQIEVPTEEVTEIKNGQRKQVQRKVYPG 182 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVR-FGASPAIVPSAVIHQLS-------------VY 99 Y+ V D + + T GV+ FV P+ + + ++ Sbjct: 183 YILVRMDLTDQSWSAVRNTPGVTGFVGATAQKPSALTIDEVVKILTPTAPRKPASVATTP 242 Query: 100 KPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTE 158 + G+ V + +G F A E + + + +L+++ +E + ++ Sbjct: 243 GSAPVRTEVDFSIGESVTVMDGPFATLPATINEVNADAQKLKVLVSIFGRETPVELSFSQ 302 Query: 159 FRKL 162 K+ Sbjct: 303 VAKI 306 >UniRef50_D1BP79 Transcription antitermination protein nusG n=5 Tax=Veillonellaceae RepID=D1BP79_VEIPT Length = 178 Score = 147 bits (372), Expect = 1e-34, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 66/172 (38%), Gaps = 12/172 (6%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY+++ G + + LE + L P+ G + V +FP Sbjct: 5 KKWYVIHTYSGYENKVKTTLELKVQSMGLQDVISRILVPLEDEIDEKDGVKKVVKRKIFP 64 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYK--PKDIVDPATP 110 Y+ VE + + T GV+ FV P + + + + + K Sbjct: 65 GYVLVEMEVNDRSWYVVRNTPGVTGFVGSATKPVPLSDSEVEHILKSQGLDKKPTINVDV 124 Query: 111 YPGDKVIITEGAFEGFQAIFTEPDGEAR-SMLLLNLINKEIKHSVKNTEFRK 161 G+ V IT GAFE + TE + E L + + N++ + ++ ++ K Sbjct: 125 EVGETVRITSGAFEDKLGVITELNPEKGTLKLSVEMFNRDTEVELEFSQVEK 176 >UniRef50_C4Z2Q9 Transcription antitermination protein nusG n=20 Tax=Bacteria RepID=C4Z2Q9_EUBE2 Length = 178 Score = 147 bits (371), Expect = 1e-34, Method: Composition-based stats. Identities = 35/172 (20%), Positives = 71/172 (41%), Gaps = 14/172 (8%) Query: 3 SWYLLYCKRGQLQRAQEHLER---------QAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G + + ++E+ Q + + P+ T+ +I G + A + +FP Sbjct: 5 KWYVVHTYSGYENKVKANIEKTVENRNLHDQILEVIVPLETVVEIKDGSKKAAQKKMFPG 64 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY-- 111 Y+ V+ + TRGV+ FV G+ P + I L + ++ Sbjct: 65 YVLVKMVMNDDSWYVVRNTRGVTGFVGPGSKPVPLTPTEIKNLGISLEEEQEVKPVIQFA 124 Query: 112 --PGDKVIITEGAFEGFQAIFTEPDGEARS-MLLLNLINKEIKHSVKNTEFR 160 GDKV+I GA+E T + + + + + +E + T+ + Sbjct: 125 GKVGDKVMILSGAWEDTVGEITNINEGKQCLTINVEMFGRETPVEIDFTDVK 176 >UniRef50_Q48H23 Transcriptional activator RfaH n=7 Tax=Pseudomonas RepID=Q48H23_PSE14 Length = 170 Score = 146 bits (369), Expect = 2e-34, Method: Composition-based stats. Identities = 54/160 (33%), Positives = 80/160 (50%), Gaps = 2/160 (1%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 WYL+ K Q RA+EHL RQ C P+ ++ R EPLFP YLF++ D Sbjct: 9 RWYLIQTKPRQEARAEEHLRRQHFQCYRPLQ-VDVKKTAARVQADEPLFPGYLFIQMDQV 67 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEGA 122 + I +TRGVS V FG P V +I Q+ A GD V+IT G+ Sbjct: 68 QDNWYPIRSTRGVSRIVTFGGHPVPVRDHLIEQIRQRLSTPAPK-ARFIQGDPVMITTGS 126 Query: 123 FEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 + +AIF DG R+++LLN++ ++ K + + ++ Sbjct: 127 WSDVEAIFLSEDGTERAVILLNMLQRQQKMGLPISSLSRV 166 >UniRef50_P35872 Transcription antitermination protein nusG n=13 Tax=Bacteria RepID=NUSG_THET8 Length = 184 Score = 146 bits (369), Expect = 3e-34, Method: Composition-based stats. Identities = 37/180 (20%), Positives = 71/180 (39%), Gaps = 21/180 (11%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIV-RGKRTAVSEPLFP 52 WY ++ GQ ++A+ +LE++ L P + ++ GK+ V + LFP Sbjct: 4 EWYAVHTLVGQEEKAKANLEKRIKAFGLQDKIFQVLIPTEEVVELREGGKKEVVRKKLFP 63 Query: 53 NYLFVEFDPEVI-----HTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVY-----KPK 102 YLF++ D + T G++ FV G P + + + K + Sbjct: 64 GYLFIQMDLGDEEEPNEAWEVVRGTPGITGFVGAGMRPVPLSPDEVRHILEVSGLLGKKE 123 Query: 103 DIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 GD+V + G F F TE + E + +++ + +E + ++ K Sbjct: 124 APKAQVAFREGDQVRVVSGPFADFTGTVTEINPERGKVKVMVTIFGRETPVELDFSQVVK 183 >UniRef50_C9M8Z2 Transcription antitermination protein nusG n=2 Tax=Synergistaceae RepID=C9M8Z2_9BACT Length = 185 Score = 146 bits (368), Expect = 3e-34, Method: Composition-based stats. Identities = 36/174 (20%), Positives = 70/174 (40%), Gaps = 14/174 (8%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPN 53 W+ + G + + +LE++ L PM + + GK +S LFP+ Sbjct: 12 QWFAVQTYSGYENKVKNNLEQRIASMNAEDKIFRVLVPMEDVVVVKDGKSKQMSRKLFPS 71 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVY----KPKDIVDPAT 109 Y+ VE + + T GV+ FV GA P + + + V + + Sbjct: 72 YVLVEMIMDDQSWYVVRHTPGVTGFVGAGAHPLPLSDEEVRDVLVKVGELEAETPQIVVE 131 Query: 110 PYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162 GD V + G F G + ++ + + +L++ +E + V +TE ++ Sbjct: 132 CQVGDSVRVKSGPFVGAVGVVSDVNTSTGKVKFVLSVFGRETEAEVNHTELERV 185 >UniRef50_D1B6U2 Transcription antitermination protein nusG n=1 Tax=Thermanaerovibrio acidaminovorans DSM 6589 RepID=D1B6U2_THEAS Length = 181 Score = 145 bits (367), Expect = 4e-34, Method: Composition-based stats. Identities = 34/175 (19%), Positives = 65/175 (37%), Gaps = 14/175 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY++ G + + +LE++ N L P+ + G+ V +FP Sbjct: 6 RRWYIVQTYSGYENKVKANLEQRIATMGMEDRIFNVLVPVEEKVFVKEGRAKRVRRKVFP 65 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLS----VYKPKDIVDPA 108 +Y+ VE + + T GV+ FV G P + + ++ + + Sbjct: 66 SYVLVEMIMDDQSWYVVRHTPGVTGFVGSGNHPIPLTDREVAEVMGKIGLPADRKPKVEL 125 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRKL 162 GD V + G FEG E D + R + + +E + + K+ Sbjct: 126 DIEVGDTVRVKSGPFEGCVGPVVEVDPDKGRVRFSVTVFGRETVAEAGHEDLEKV 180 >UniRef50_Q1YPV4 Transcriptional activator RfaH n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YPV4_9GAMM Length = 169 Score = 145 bits (366), Expect = 5e-34, Method: Composition-based stats. Identities = 67/161 (41%), Positives = 98/161 (60%), Gaps = 2/161 (1%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M+SW+LL K Q RA E+LERQ V PMI +EK+ RG R E LFP YLFV FD Sbjct: 1 MESWFLLQTKSKQEGRAVENLERQGVKSFCPMIKVEKLSRGSRVVKEEALFPGYLFVNFD 60 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKP--KDIVDPATPYPGDKVII 118 + +TT+ +TRGVSHFV P VP ++I+QL + D + P G+++ I Sbjct: 61 QSSVSSTTVRSTRGVSHFVTSAGLPVKVPESLINQLMLRTDAGNDETVSSLPSKGERLQI 120 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 +G F G A+F++PDG+ R+++L+NL+N+++ S+ Sbjct: 121 IDGPFRGLNAVFSQPDGDRRAIVLINLLNQQVSASLPFASL 161 >UniRef50_Q3J8A9 Transcriptional activator RfaH n=1 Tax=Nitrosococcus oceani ATCC 19707 RepID=Q3J8A9_NITOC Length = 174 Score = 144 bits (365), Expect = 7e-34, Method: Composition-based stats. Identities = 58/164 (35%), Positives = 89/164 (54%), Gaps = 3/164 (1%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + WYL+YCK Q + AQE+LERQ P++ + +R A EPLFP YLF+ D Sbjct: 9 KFWYLIYCKPRQERLAQENLERQNFETYLPLVRQMRRRAYRRIATVEPLFPRYLFIHLDT 68 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD---IVDPATPYPGDKVII 118 E + +I +T GV VRFGA PA VP +I +L ++ D + G +V++ Sbjct: 69 EKDNWGSIRSTIGVISLVRFGAQPAHVPDTLIRELQTHEGSDGIQDLASPDFRKGQQVLV 128 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 EG G + I+ +G+ R+ +LL ++ K+IK V ++L Sbjct: 129 EEGLLAGHEGIWLTSNGKKRAHILLEIMGKQIKTEVNENWLKRL 172 >UniRef50_A4QBE9 Transcription antitermination protein nusG n=16 Tax=Corynebacterineae RepID=A4QBE9_CORGB Length = 318 Score = 144 bits (365), Expect = 7e-34, Method: Composition-based stats. Identities = 36/194 (18%), Positives = 67/194 (34%), Gaps = 35/194 (18%) Query: 4 WYLLYCKRGQLQRAQEHL---------ERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNY 54 WY++ C G + + +L E + P+ + +I GKR V L P Y Sbjct: 124 WYIIQCYSGYENKVKANLDMRAQTLEVEDDIFEVVVPIEQVTEIRDGKRKLVKRKLLPGY 183 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIV--------- 105 + V D + + T GV+ FV + V + + + + + +V Sbjct: 184 VLVRMDMNDRVWSVVRDTPGVTSFVGNEGNATPVKHRDVAKFLMPQEQAVVTGEAAAAAD 243 Query: 106 ----------------DPATPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINK 148 G+ V I GAF A + D E + +L+++ + Sbjct: 244 EGEQVVAMPTDTKKPQVAVDFTVGEAVTILTGAFASVSATISSIDPELQKLEVLVSIFGR 303 Query: 149 EIKHSVKNTEFRKL 162 E + + K+ Sbjct: 304 ETPVDLSFDQVEKV 317 >UniRef50_C1Z9H7 Transcription antitermination protein nusG n=1 Tax=Planctomyces limnophilus DSM 3776 RepID=C1Z9H7_PLALI Length = 204 Score = 144 bits (365), Expect = 7e-34, Method: Composition-based stats. Identities = 33/175 (18%), Positives = 61/175 (34%), Gaps = 15/175 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAV---------NCLAPMITLEKIVRGKRTAVSEPLFP 52 WY+L + + +++L R+ L P + + GK+ V L+P Sbjct: 29 MLWYVLKITSNREKSIRDNLLRRIRQEGLEQFFGEILIPTEKVVENKNGKKKVVEHKLYP 88 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD-----P 107 YL V+ + T GV F P + I ++ + + Sbjct: 89 GYLMVQMILNDDTWYIVRTTGGVGDFTGSAGKPTPMQDHEIARMLQKQEQKQESAAPAMK 148 Query: 108 ATPYPGDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRK 161 GD V I EG FEGF+ D + +L+ + + ++ + + Sbjct: 149 IEFAVGDIVKIKEGTFEGFEGPIDSIDEANGKINVLVEIFGRSTPVELEYWQAER 203 >UniRef50_B1KMD8 Transcriptional acivator RfaH n=21 Tax=Shewanella RepID=B1KMD8_SHEWM Length = 179 Score = 144 bits (364), Expect = 9e-34, Method: Composition-based stats. Identities = 54/177 (30%), Positives = 83/177 (46%), Gaps = 15/177 (8%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M++WYLLYCK RA +L Q ++ P I EK V+G+ + PLFP YLF+ D Sbjct: 3 MKAWYLLYCKPRGEARAVHNLTLQNIDTYLPTIGEEKRVKGEVSIKRIPLFPGYLFINID 62 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK---------------DIV 105 P+V I++TRGV V + ++IH + + + K D Sbjct: 63 PQVTSVARIHSTRGVGRIVGCNELMTSIDDSIIHSIRLREHKLLSELLPASELSQKCDGS 122 Query: 106 DPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 PGD+V TEG F + IF E G+ R +L ++ ++ + SV + + Sbjct: 123 STVEINPGDQVKFTEGPFADLEGIFAEKSGDKRCHVLFEIMGQKKRVSVPRDSIKPV 179 >UniRef50_C8QDS8 Transcriptional acivator RfaH n=2 Tax=Pantoea sp. At-9b RepID=C8QDS8_9ENTR Length = 170 Score = 144 bits (364), Expect = 9e-34, Method: Composition-based stats. Identities = 71/156 (45%), Positives = 103/156 (66%), Gaps = 1/156 (0%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEK-IVRGKRTAVSEPLFPNYLFVEF 59 M++WY+ K Q +RAQ+ L Q V CL P+ + + G R +PLFPNY+FV F Sbjct: 1 MENWYVAQTKYAQEKRAQQQLLSQGVTCLFPVFSEVRLQNGGIRRIAEQPLFPNYIFVRF 60 Query: 60 DPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIIT 119 DPEV+HTT I ATRGVS + FG P++VP +VI +L+ + ++ P GD+V+I Sbjct: 61 DPEVVHTTAIKATRGVSSLISFGGLPSVVPDSVIIRLNQGWERAPLNTDAPVHGDRVVIR 120 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVK 155 +GAFEG +A++ EPDG R+MLLL L+N+E++ V+ Sbjct: 121 DGAFEGLEAVWYEPDGLKRAMLLLTLMNREVRVPVE 156 >UniRef50_D2RNN9 NusG antitermination factor n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RNN9_ACIFE Length = 191 Score = 144 bits (363), Expect = 1e-33, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 62/186 (33%), Gaps = 25/186 (13%) Query: 2 QSWYLLYCKRGQLQRAQEHLE---------RQAVNCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY+++ G + + +LE Q L PM K+ V+ +FP Sbjct: 5 KHWYVIHTYSGYENKVKMNLESKIHSLGMEEQIFQVLVPMQNEVDAKDDKQKVVARKVFP 64 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL---------------S 97 Y+ +E + + T GV+ FV G P + + ++ Sbjct: 65 GYVLIEMIVDDRTWYAVRNTPGVTGFVGTGTKPIPLSDREVERILGAQPKEGDKAEAAGK 124 Query: 98 VYKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKN 156 + + D V I F E + E + +++ + +E VK Sbjct: 125 AVEEPVVRMECPVGLNDTVRIKAPGFTDMVGTVAEINDEQQKIKVMVEMFGRETPIEVKF 184 Query: 157 TEFRKL 162 T+ + Sbjct: 185 TQVEAI 190 >UniRef50_B0RIR6 Transcription antitermination protein nusG n=16 Tax=Actinobacteria (class) RepID=B0RIR6_CLAMS Length = 345 Score = 143 bits (362), Expect = 2e-33, Method: Composition-based stats. Identities = 33/189 (17%), Positives = 65/189 (34%), Gaps = 29/189 (15%) Query: 3 SWYLLYCKRGQLQRAQEHLERQ---------AVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G +R + ++E + PM + +I G+R V+ P Sbjct: 157 KWYVIHSYAGFERRVKSNIENRMVSLNMEDDIYQIEVPMEDVVEIKNGQRKMVNRVRIPG 216 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSV--------------- 98 Y+ V + + T GV+ FV +P + + Sbjct: 217 YVLVRMALNEDSWSVVRHTPGVTGFVGNAHNPTPLRFEEAFSMLKSLVEIKEVAQVKGQP 276 Query: 99 ----YKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHS 153 + + G+ + I EG+F G +E E + +L++L +E Sbjct: 277 TKGGQAQRVVAAEVDFEIGETITIKEGSFAGLPGSISEIKPESGKLTVLVSLFERETPVE 336 Query: 154 VKNTEFRKL 162 + + KL Sbjct: 337 LSFDQVTKL 345 >UniRef50_Q2WBC3 Transcription antitermination protein nusG n=1 Tax=Magnetospirillum magneticum AMB-1 RepID=Q2WBC3_MAGSA Length = 167 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 41/164 (25%), Positives = 73/164 (44%), Gaps = 4/164 (2%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M+SW++++ + A HL+RQ + P + + K V PLFP YLF+ D Sbjct: 1 MESWFVVHTHANAEKIAAGHLQRQHFDVYLPQYSKRRSHARKVEWVKAPLFPRYLFLRMD 60 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIV----DPATPYPGDKV 116 P++ +I +T GV V G P + +I ++ + + + G ++ Sbjct: 61 PDLTPWFSIRSTVGVHSLVCRGGMPVPLGQVIIDEIRGREDDSGLVSLGEAMPFASGQRL 120 Query: 117 IITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 I EG +F D R +LLL+L+ ++++ V R Sbjct: 121 EIVEGPLAEQLGLFQGLDDMNRVVLLLDLLGRQVRVRVPLEAVR 164 >UniRef50_P52852 Transcription antitermination protein nusG n=51 Tax=Bacteria RepID=NUSG_STRGB Length = 309 Score = 143 bits (360), Expect = 2e-33, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 58/183 (31%), Gaps = 24/183 (13%) Query: 3 SWYLLYCKRGQLQRAQEHLERQ---------AVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G R + +LE + P + +I G R + + P Sbjct: 126 EWYVIHTYAGYENRVKTNLEPRAVSLNVEDYIFQAEVPQEEVVQIKNGDRKTIKQNKLPG 185 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLS---------------V 98 Y+ V D + T GV+ FV P + I ++ Sbjct: 186 YVLVRMDLTNESWGVVRNTPGVTGFVGNAYDPYPLTLDEIVKMLAPEAEEKAARAEGKPA 245 Query: 99 YKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTE 158 + K V G V +T+G F Q I + L+ + E + + Sbjct: 246 PQRKVEVQVLDFEVGASVTVTDGPFATLQTINEIKSDSKKVKGLVEIFGWETPVELSFDQ 305 Query: 159 FRK 161 +K Sbjct: 306 IQK 308 >UniRef50_C4LL90 Transcription antitermination protein nusG n=5 Tax=Corynebacterium RepID=C4LL90_CORK4 Length = 353 Score = 143 bits (360), Expect = 2e-33, Method: Composition-based stats. Identities = 33/199 (16%), Positives = 62/199 (31%), Gaps = 39/199 (19%) Query: 3 SWYLLYCKRGQLQRAQEHLE---------RQAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY++ C G + + LE Q + P+ ++ GKR V L P Sbjct: 154 EWYIVQCYSGYENKVKTDLEVRSQTLGVDEQIHEVVVPIEEEVEVKDGKRKVVKHKLLPG 213 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD------- 106 Y+ + + + + I T G++ FV P V + + + Sbjct: 214 YVLMRIELDDASWSVIRDTPGITSFVGNEGHPTPVKIREVAKFLLPPETATQKAEQEGEE 273 Query: 107 ----------------------PATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLL 143 G+ V + G F A +E D E + L+ Sbjct: 274 PAAVDVSSTGVAAPPRPSADKVKVDYEVGEAVTVLSGPFASVSATISEIDAENSKLKALV 333 Query: 144 NLINKEIKHSVKNTEFRKL 162 ++ +E + + K+ Sbjct: 334 SIFGRETPVELDFDQVEKI 352 >UniRef50_A0XZ39 Transcriptional activator RfaH n=2 Tax=Alteromonadales RepID=A0XZ39_9GAMM Length = 161 Score = 143 bits (360), Expect = 2e-33, Method: Composition-based stats. Identities = 64/160 (40%), Positives = 98/160 (61%), Gaps = 1/160 (0%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M+SWYL+ CK Q +RA+ +L Q + P++T EK+V+ +RT LFPNYLFV D Sbjct: 1 MESWYLVICKPRQEERAKANLNNQGIEAFYPILTTEKLVKSRRTVKQVALFPNYLFVCLD 60 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITE 120 + + TRG+ FV +GA+ +VP A+I L+ + V+ P GD V ++ Sbjct: 61 SKNGPFAAVKNTRGIGGFVTYGANYQVVPLAIIEHLNNHTSN-TVESQLPKQGDAVSVSN 119 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 +F+ AI+ EPDG+ RS+LL+NL+NK+++ SV NT+ Sbjct: 120 HSFKNIDAIYKEPDGDMRSILLINLLNKQVEMSVDNTDIE 159 >UniRef50_Q3KCF2 Transcriptional activator RfaH n=1 Tax=Pseudomonas fluorescens Pf0-1 RepID=Q3KCF2_PSEPF Length = 178 Score = 143 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 51/161 (31%), Positives = 77/161 (47%), Gaps = 3/161 (1%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 +WYLL CK Q +RA +L +Q P + E+++RGKR V E LFP YLF++ + Sbjct: 10 NWYLLQCKPRQDERAHLNLLQQNYVVFHPQLVSERVIRGKRQRVQESLFPGYLFIQLSRD 69 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDP--ATPYPGDKVIITE 120 + + +TRGVS FV F PA V VI L + + PG+ + I Sbjct: 70 D-NWAPLRSTRGVSRFVEFNHGPATVAEHVIEHLRARCLESTLSEPDEALKPGENLQIVS 128 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 G + +F G R M+LL +N+E + + + Sbjct: 129 GPLAPLEGVFLGLHGTDRVMILLQFLNREQPVCLPLSVIER 169 >UniRef50_C4XIP4 Transcription antitermination protein nusG n=6 Tax=Proteobacteria RepID=C4XIP4_DESMR Length = 187 Score = 143 bits (360), Expect = 3e-33, Method: Composition-based stats. Identities = 25/172 (14%), Positives = 64/172 (37%), Gaps = 13/172 (7%) Query: 3 SWYLLYCKRGQLQRAQEHLERQ---------AVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G R + L + P + ++V+G++ + +P Sbjct: 15 RWYIVHTYSGFENRVELTLREMMRTGQDGGSIKEVVVPTEKIIELVKGEKKTSTRKFYPG 74 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAV---IHQLSVYKPKDIVDPATP 110 Y+ V+ + + + V+ F+ P + + I L V + + Sbjct: 75 YVMVKMAMDDNSWHLVQSIPRVTGFIGGKNQPTPMRDSEAQKILSLMVSRQEQPRPKYHF 134 Query: 111 YPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 GD V + +G F GF + + + + + + +++ ++ + + K Sbjct: 135 ERGDDVRVIDGPFGGFNGVVEDVNYDKGKLRVSVSIFGRQTPVELDFVQVSK 186 >UniRef50_A4XLK3 Transcription antitermination protein nusG n=10 Tax=Bacteria RepID=A4XLK3_CALS8 Length = 175 Score = 142 bits (359), Expect = 4e-33, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 71/169 (42%), Gaps = 11/169 (6%) Query: 3 SWYLLYCKRGQLQRAQEHLER---------QAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G + + +LE+ + ++ P + +I GK+ + FP+ Sbjct: 7 KWYVVHTYCGYENKVKANLEKIIENRNLSDKILDIRIPTELVTEIKDGKKIVKEKKKFPS 66 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPG 113 Y+ ++ + TI RGV+ FV + P + I + + + +++V+ G Sbjct: 67 YVLIKAVMDNDIWYTIRNVRGVTGFVGPESKPTPLTDEEIEAMGIKE-EEVVEVFDIEVG 125 Query: 114 DKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRK 161 D V I G F F + + E + ++LNL +E + K Sbjct: 126 DNVKIVAGPFADFYGPVIDINKERKKVKVMLNLFGRETPVEFDYHQVEK 174 >UniRef50_Q9CDV7 Transcription antitermination protein nusG n=52 Tax=Lactobacillales RepID=NUSG_LACLA Length = 185 Score = 142 bits (358), Expect = 5e-33, Method: Composition-based stats. Identities = 38/172 (22%), Positives = 68/172 (39%), Gaps = 14/172 (8%) Query: 4 WYLLYCKRGQLQRAQEHLERQ---------AVNCLAPMITLEKIVRGKRTAVSEPLFPNY 54 W+++ G ++ +E L + + P T+ V GK V E LFP Y Sbjct: 13 WFVIQTYAGYERKVKEDLLERAELYNMADKILRVEIPTETIRTEVNGKMKEVEENLFPGY 72 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGA---SPAIVPSAVIHQLSVYKPKDIVDPA-TP 110 + VE + + T V+ FV P + I + V K + + Sbjct: 73 VLVEMNMTDEAWFIVRNTPNVTGFVGSHGNRSKPTPLFEQEIQDILVGMGKVVREIDFDV 132 Query: 111 YPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 + G +V I +GAF GF+A TE +G+ L +++ + + + + Sbjct: 133 FVGKRVRIVDGAFSGFEAPITEINGDK-LTLTVDMFGRATPVELDMHQIEDI 183 >UniRef50_P57151 Transcription antitermination protein nusG n=17 Tax=Proteobacteria RepID=NUSG_BUCAI Length = 181 Score = 142 bits (358), Expect = 5e-33, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 53/174 (30%), Gaps = 14/174 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAV---------NCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY+L G R + + + P + +I G+R FP Sbjct: 7 KRWYVLQAFSGFESRVAQSIREHVKLNQMEDLFGEVMVPSQEVVEIRGGQRRKSEYKFFP 66 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRF-GASPAIVPSAVIH---QLSVYKPKDIVDPA 108 Y+ ++ I V F+ P+ + + Sbjct: 67 GYVLIQMKMTDSTWHLIRNVPKVLGFIGGKSDKPSPISDKEVEIIINRLRKIGNKPRPKT 126 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 PG+ + + +G F F + E D E R + +++ + + + K Sbjct: 127 LFEPGEMIRVNDGPFADFNGVVEEVDYEKSRLKVSVSIFGRSTPVELDFRQVEK 180 >UniRef50_C7RDB1 Transcription antitermination protein nusG n=2 Tax=Anaerococcus RepID=C7RDB1_ANAPD Length = 207 Score = 142 bits (358), Expect = 5e-33, Method: Composition-based stats. Identities = 34/169 (20%), Positives = 63/169 (37%), Gaps = 10/169 (5%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA--------VNCLAPMITLEKIVRGKRTAVSEPLFPNY 54 WY+++ G R + ++ + P ++ + + LFP Y Sbjct: 40 RWYVVHTYTGYENRVNDKIQMMIDNEQNPDILEVTVPTEEYVEVKNDTKKVKTRKLFPGY 99 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGD 114 + V+ + I T+GV+ FV P + A + + V I++ GD Sbjct: 100 VMVKMNITNKSWYIIRNTQGVTGFVGPDGKPVALTPAEVRKFGVKDEAPILN-INVNVGD 158 Query: 115 KVIITEGAFEGFQAIFTEPDGEAR-SMLLLNLINKEIKHSVKNTEFRKL 162 V I G FEGF A E D E +++ ++ + T+ + Sbjct: 159 DVNIISGPFEGFVAKVEEVDKEKGSIKAFVDMFGRDTLIDLDFTDIETI 207 >UniRef50_Q1RHC5 Transcription antitermination protein nusG n=15 Tax=Rickettsia RepID=NUSG_RICBR Length = 190 Score = 141 bits (357), Expect = 5e-33, Method: Composition-based stats. Identities = 34/171 (19%), Positives = 71/171 (41%), Gaps = 11/171 (6%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAV---------NCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY+++ G R + + + + L P+ + ++ R K V + L P Sbjct: 18 KKWYVIHTASGAENRIKRIMLERISKQKMSDFFDDILVPVFGVSEVKRSKNVKVEKKLMP 77 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSV-YKPKDIVDPATPY 111 +Y+ ++ + + GV+ F+ +P + + I + + + K+ D Sbjct: 78 SYILIKMNMTDKSWHLVKNIPGVTGFLGSKTTPKALTESEIQNIRLETEAKEAKDAKLYE 137 Query: 112 PGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 G+ V +TEG FE F E D E R + +++ K + T+ +K Sbjct: 138 VGEIVTVTEGPFETFTGTVEEVDQEKARLKVSVSIFGKATPIELSFTQVKK 188 >UniRef50_B3QYK9 Transcription antitermination protein nusG n=3 Tax=Chlorobiaceae RepID=B3QYK9_CHLT3 Length = 203 Score = 141 bits (357), Expect = 6e-33, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 64/171 (37%), Gaps = 13/171 (7%) Query: 3 SWYLLYCKRGQLQRAQEHLERQ----AV-----NCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY + G ++ +EHL+++ + P ++ GK+ + + FP Sbjct: 29 RWYTVRTYSGHERKVKEHLDKKIDDAGIRDKIPQVYIPYERFVEVKDGKKKSRVKNAFPG 88 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK---DIVDPATP 110 Y+ +E + + V F+ G P + + +L + + +V A Sbjct: 89 YVLIEAVLDKQTRYLVLDAPSVIGFLGVGDEPTPLRPDEVKRLLEPEQEIERKMVTKAPF 148 Query: 111 YPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFR 160 G V I +G F + E + E + +L+N + V ++ + Sbjct: 149 EVGGAVKIIDGPFNSLTGVIQEVNAEKMKVKVLINFFGRSTPTEVDFSQVK 199 >UniRef50_C8NX40 Transcription antitermination protein nusG n=1 Tax=Corynebacterium genitalium ATCC 33030 RepID=C8NX40_9CORY Length = 342 Score = 141 bits (357), Expect = 6e-33, Method: Composition-based stats. Identities = 32/197 (16%), Positives = 62/197 (31%), Gaps = 37/197 (18%) Query: 3 SWYLLYCKRGQLQRAQEHL---------ERQAVNCLAPMITLEKI-VRGKRTAVSEPLFP 52 SWY++ G + + +L E + + P+ + + GK+ V L P Sbjct: 145 SWYIIQSYSGYENKVKTNLDMRIQTLEVEESIYDVVVPIEQVFEKDKNGKKKIVKRKLLP 204 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL---------------- 96 Y+ V D + + T GV+ FV + V + + Sbjct: 205 GYVLVRMDLNDAAWSVVRETPGVTSFVGNEGNATPVKHRDVAKFLMPKAAPVDGEATASE 264 Query: 97 ----------SVYKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNL 145 + + G+ V I GA A E D E + L+++ Sbjct: 265 ANTEGETVIAMPEQEEKPNVAHDFQVGEAVTILSGALASVSATINEIDPETGKIQALVSI 324 Query: 146 INKEIKHSVKNTEFRKL 162 +E + + ++ Sbjct: 325 FGRETPVELTADQIERI 341 >UniRef50_C2KN14 Transcription antitermination protein nusG n=3 Tax=Mobiluncus RepID=C2KN14_9ACTO Length = 280 Score = 141 bits (357), Expect = 6e-33, Method: Composition-based stats. Identities = 31/190 (16%), Positives = 60/190 (31%), Gaps = 30/190 (15%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA----------VNCLAPMITLEKIVRGKRTAVSEPLFP 52 WY+++ +R ++++E++ PM ++ R V P P Sbjct: 90 RWYVVHTYSSYEKRVKQNIEQRVANNPGMEEWIYQVEIPMEEHIEVKAKSRRKVLRPRIP 149 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSV-------------- 98 Y+ V D E + T V+ FV P + + + Sbjct: 150 GYVLVRMDMEENSWRLVKDTPAVTGFVGNQQDPVPLTLQEVIDMLAPTAAQAAKATVTED 209 Query: 99 -----YKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKH 152 + G V IT G FE A E + ++ +L+ + +E Sbjct: 210 GQIAVSQAVSTQIVTDFEVGQGVTITSGPFETMTATIAEIYPDTSKLKVLVTIFERETPV 269 Query: 153 SVKNTEFRKL 162 + + K+ Sbjct: 270 ELNFDQVEKI 279 >UniRef50_A6W3A4 Transcription antitermination protein nusG n=20 Tax=Bacteria RepID=A6W3A4_MARMS Length = 177 Score = 141 bits (357), Expect = 6e-33, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 59/174 (33%), Gaps = 14/174 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAV---------NCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY++ G + L + + L P + +I GK+ +P Sbjct: 3 KRWYVVQAYSGYEKHVMRSLIERVQVMGQEENFGDILVPTEEVVEIRDGKKRKSERKFYP 62 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFV-RFGASPAIVPSAVIHQLSVYKPKDIVDP---A 108 Y+ V+ D + T V F+ P+ + S + + P Sbjct: 63 GYVLVQMDMNDASWHLVKGTSRVLGFIGGTADKPSPITSREADAILQRVSDGVDKPRPKT 122 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 G+ V + EG F F + E D + R + + + + ++ ++ K Sbjct: 123 LFEVGEVVRVNEGPFADFNGVVEEVDYDKSRIKVAVLIFGRSTPVDLEFSQVEK 176 >UniRef50_C9LQP9 Transcription antitermination protein nusG n=1 Tax=Dialister invisus DSM 15470 RepID=C9LQP9_9FIRM Length = 206 Score = 141 bits (356), Expect = 7e-33, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 62/163 (38%), Gaps = 10/163 (6%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G + ++ L R+ + L PM E++ G++ VS +FP Sbjct: 35 RWYVIHTYSGYENKVKDTLTRKVHSMGMDDTIIQILLPMHDEEEVKDGEKKVVSRKVFPG 94 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPG 113 YL ++ + + T GV+ FV P + ++ K K G Sbjct: 95 YLLIQMEVNDRSWYVVRNTPGVTGFVGTTTKPIPLSDEEAKRIIEGKDKKQTAKTDAKVG 154 Query: 114 DKVIITEGAFEGFQAIFTEP-DGEARSMLLLNLINKEIKHSVK 155 D + IT G F A+ + D ++ ++ ++ Sbjct: 155 DTIKITRGPFADRSAVVLDVSDDRSKIKADISNFGTTTTIELE 197 >UniRef50_D0MHN6 Transcription antitermination protein nusG n=80 Tax=Bacteria RepID=D0MHN6_RHOM4 Length = 186 Score = 141 bits (355), Expect = 1e-32, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 66/175 (37%), Gaps = 14/175 (8%) Query: 1 MQSWYLLYCKRGQLQRAQEHLER---------QAVNCLAPMITLEKIVRGKRTAVSEPLF 51 ++ WY+L G ++ +++LER + L P T+ ++ GK+ F Sbjct: 10 VRKWYVLRTFSGHEKKVKQYLEREIERLGLQDRVGQILIPTETVFELRGGKKRTRERTFF 69 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK----DIVDP 107 P Y+ +E + I V F+ G P + + ++ + Sbjct: 70 PGYILIEAVLDRELQHLIANMPSVVGFLGSGDQPTPLRPDEVRRILGKVDEAREMGEQPE 129 Query: 108 ATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 PGD V I EG F F + E + + +++++ ++ V + + Sbjct: 130 IPFKPGDVVRIIEGPFNNFTGVVEEVYPDKLKLKVMVSIFGRKTPLEVDYLQVER 184 >UniRef50_A6GM36 NusG antitermination factor n=1 Tax=Limnobacter sp. MED105 RepID=A6GM36_9BURK Length = 179 Score = 140 bits (353), Expect = 1e-32, Method: Composition-based stats. Identities = 48/166 (28%), Positives = 78/166 (46%), Gaps = 5/166 (3%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGK-RTAVSEPLFPNYLFVEF 59 M WY++Y K Q A E+L+RQ N P ++K G+ V EPLFP Y+F++ Sbjct: 13 MAQWYVMYTKPRQETVALENLQRQNYNVFFPQARVQKRKTGQGTVQVVEPLFPRYMFIQL 72 Query: 60 DPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIV----DPATPYPGDK 115 + V + + +T+G V+FG P++VP +I + D V G + Sbjct: 73 EVGVSDFSKLRSTKGCVDLVKFGGKPSVVPIELIELIQHQLDSDSVLDLLKLNELEVGGE 132 Query: 116 VIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 V + EG FEG + R ++LLN++ E + ++ K Sbjct: 133 VRVAEGPFEGMMGKIAARKSDQRVIVLLNVLGAERSVELAQSQLDK 178 >UniRef50_A1T084 NusG antitermination factor n=1 Tax=Psychromonas ingrahamii 37 RepID=A1T084_PSYIN Length = 169 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 63/164 (38%), Positives = 91/164 (55%), Gaps = 4/164 (2%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 W+++YCK + RAQ +LE Q V P I EKI+R K+ V EPLFP+YLFV Sbjct: 4 QWFVVYCKSREELRAQRNLENQGVYSFFPKICKEKILRSKKKVVEEPLFPSYLFVNISKN 63 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD----IVDPATPYPGDKVII 118 + I +TRG+++FV+FG S A +P I ++ + + GDK+ I Sbjct: 64 DEKFSAIRSTRGINNFVKFGLSIATIPDQQIKKIEQLCHVNNKLAVNSEDVYQNGDKIEI 123 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G F+G AIF DG RSMLLL ++N++ S KN+ +K+ Sbjct: 124 LSGPFKGLTAIFNIEDGLERSMLLLKILNQDNNISFKNSALKKV 167 >UniRef50_Q0FE68 Transcription antitermination protein nusG n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FE68_9RHOB Length = 166 Score = 140 bits (353), Expect = 2e-32, Method: Composition-based stats. Identities = 40/161 (24%), Positives = 69/161 (42%), Gaps = 2/161 (1%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + W++L K +A ++L RQ P+ + + + PLFP Y+F+ FD Sbjct: 3 KEWFILQFKPNSHHQATKNLTRQGFETFLPLTDITSRKTSRFINTTRPLFPGYMFITFDR 62 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKP--KDIVDPATPYPGDKVIIT 119 IN T GVS V F ++ +P+ ++ L V I+ GD+V I Sbjct: 63 TKPEWHKINNTYGVSRLVTFNSNLKSIPTTLVENLMVRCDLSSKILPVENLKKGDQVKIL 122 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 G F F A + + R +L++L++++ K Sbjct: 123 HGPFANFIATVETYETDQRIWVLMDLMSRKTKIQTPLDALE 163 >UniRef50_A3ZLI3 Transcription antitermination protein nusG n=1 Tax=Blastopirellula marina DSM 3645 RepID=A3ZLI3_9PLAN Length = 294 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 29/177 (16%), Positives = 61/177 (34%), Gaps = 16/177 (9%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQ----AVNCL-----APMITLEKIVRGKRTAVSEPLFP 52 WY+L + + + +L R+ + P + + GK+ L+P Sbjct: 118 MDWYILKVQSNREKSICANLWRRVKMAGLEAYFDEVMVPTEDIVEFKNGKKKITKRKLYP 177 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT--- 109 Y+ V + T G+ F P + + + +++ + Sbjct: 178 GYIVVHMAINDDTWFLVRETGGIGDFTGAAGRPTPMLAHEVERITKKVEDEETGEEPVKT 237 Query: 110 ---PYPGDKVIITEGAFEGFQAIFTEPDG-EARSMLLLNLINKEIKHSVKNTEFRKL 162 GD V ITEG FE F+ D R +++N+ + +++ + + Sbjct: 238 NIRFKLGDHVRITEGTFENFEGDVEGIDETNGRVTVMINIFGRTTPVEMEHWQMEPV 294 >UniRef50_A6CA55 Transcription antitermination protein nusG n=1 Tax=Planctomyces maris DSM 8797 RepID=A6CA55_9PLAN Length = 194 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 29/173 (16%), Positives = 63/173 (36%), Gaps = 14/173 (8%) Query: 4 WYLLYCKRGQLQRAQEHL----ERQAVNCL-----APMITLEKIVRGKRTAVSEPLFPNY 54 WY+L + + + ++ L +R + P + + GK+ L+P Y Sbjct: 22 WYVLKVQSNREKSIRDALLRGIKRDGLEEYFGEIIIPTEKVVETKGGKKRVFERKLYPGY 81 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA----TP 110 L ++ + + +T GV F P + I ++ + P Sbjct: 82 LMIQVELNDDSWYLVRSTNGVGDFTGAAGKPIPMQEHEIARMLGREESKEETPVKIKLDF 141 Query: 111 YPGDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRKL 162 GD V + + FEGF+ D + +L+ + ++ ++ + K+ Sbjct: 142 QVGDVVKVKDATFEGFEGTIDAVDEASGKVTVLIEIFSRPTPTELEYWQIEKV 194 >UniRef50_Q1UZH8 Transcription antitermination protein nusG n=4 Tax=SAR11 cluster RepID=Q1UZH8_PELUB Length = 176 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 29/174 (16%), Positives = 65/174 (37%), Gaps = 13/174 (7%) Query: 1 MQSWYLLYCKRGQLQRA---------QEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLF 51 M++WY++ + + + + + P + ++ RGKR + F Sbjct: 1 MKNWYIVQSHSNFENKVAGLIKEEAEKAKISDKIEEIVVPTHDVTEVKRGKRIQRKKKYF 60 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDP---A 108 P Y+ ++ + + I + VS F+ P V I ++ + P Sbjct: 61 PGYVLIKSEMDNDLYHLIKNLKRVSGFLGSKGIPVPVSDKEIEKILGQIKDGVAQPKSGI 120 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 G+KV + +G F F + + D E R + +++ + ++ + K Sbjct: 121 EYSIGEKVQVVDGPFASFSGMVEDIDEEKSRLKVSVSIFGRPTPVDLEYNQVEK 174 >UniRef50_P65591 Transcription antitermination protein nusG n=84 Tax=Bacteria RepID=NUSG_NEIMA Length = 178 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 63/175 (36%), Gaps = 14/175 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAV---------NCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY++ G + Q LE + L P+ + I G++T +P Sbjct: 3 KKWYVVQAYSGFEKNVQRILEERIAREEMGDYFGQILVPVEKVVDIRNGRKTISERKSYP 62 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRF-GASPAIVPSAVIHQLSVYKPKDIVDP---A 108 Y+ VE + + +T VS F+ P + + I P Sbjct: 63 GYVLVEMEMTDDSWHLVKSTPRVSGFIGGRANRPTPISQREAEIILQQVQTGIEKPKPKV 122 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRKL 162 G +V + EG F F + E + E + + + + +E ++ ++ K+ Sbjct: 123 EFEVGQQVRVNEGPFADFNGVVEEVNYERNKLRVSVQIFGRETPVELEFSQVEKI 177 >UniRef50_B2KEU4 Transcription antitermination protein nusG n=2 Tax=Elusimicrobia RepID=B2KEU4_ELUMP Length = 178 Score = 139 bits (351), Expect = 3e-32, Method: Composition-based stats. Identities = 32/174 (18%), Positives = 69/174 (39%), Gaps = 14/174 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLE---------RQAVNCLAPMITLEKIVRGKRTAVSEPLFP 52 ++WY+++ + G + +E + + L P + ++ + K+ FP Sbjct: 5 KAWYIVHTQTGHEDKVREKILLQVETQNFGDRIFQVLVPTEDVVEVKQNKKVQRKRKFFP 64 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDP---AT 109 +Y+ VE D I GV+ F+ +P +P I + P Sbjct: 65 SYVLVEMDLTSEAYWFIRNVSGVTGFLG-DPNPVPLPEEEIAAILDLTQPGSGKPKHVIE 123 Query: 110 PYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRKL 162 G+ V ITEG F+ F + E + + + +++N+ ++ + + K+ Sbjct: 124 FEAGENVRITEGPFKHFIGVVQEVNNQKTKLKIMVNVFDRSTPVELDFLQVEKI 177 >UniRef50_Q0F316 Transcriptional activator RfaH n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F316_9PROT Length = 172 Score = 138 bits (349), Expect = 5e-32, Method: Composition-based stats. Identities = 44/157 (28%), Positives = 70/157 (44%), Gaps = 6/157 (3%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + W+ + K Q A +LERQ PMI GK + P F YLFV Sbjct: 4 KQWFAIRVKPRQESLAAANLERQGFEVYLPMINTRISHAGKVSWQPRPFFAGYLFVHLSI 63 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIV------DPATPYPGDK 115 + TTI +T GV V FG + VI L ++ + + G+K Sbjct: 64 DEQRWTTIRSTVGVLAPVAFGTFYPPLSDQVIALLQARHDENGLIAVSSTPESPFRAGEK 123 Query: 116 VIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKH 152 V + +GA +G + +F E G+ R+++LL+ + K ++ Sbjct: 124 VRMLDGAMKGLEGVFIEMRGQDRALILLDWMKKSMRV 160 >UniRef50_B9CLA2 Transcription antitermination protein nusG n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CLA2_9ACTN Length = 184 Score = 138 bits (349), Expect = 5e-32, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 60/178 (33%), Gaps = 20/178 (11%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAV----SE 48 + WY+L+ G + LE + V+ AP + ++ + V Sbjct: 3 KRWYVLHTYSGYENKVMNDLEHRVEAYGLQDAVVDVQAPGEMVTEVKKRGEKDVTSTKEV 62 Query: 49 PLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDI---- 104 +P Y+ V + + + + T GV+ F+ P+ + +++ Sbjct: 63 KFYPGYVLVRMELDDNTWSVVRNTPGVTGFLGVDGKPSPLRREEFNKMMRRSGGKADATT 122 Query: 105 --VDPATPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEF 159 G V + G F I +E + E + ++L + +E + + Sbjct: 123 LKRVTTDVEVGQSVHVLSGPLADFDGIVSEVNAESGKIKVMLTIFGRETPVELTLDQI 180 >UniRef50_B1I6V9 Transcription antitermination protein nusG n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I6V9_DESAP Length = 173 Score = 138 bits (347), Expect = 8e-32, Method: Composition-based stats. Identities = 39/165 (23%), Positives = 66/165 (40%), Gaps = 5/165 (3%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 W + K + A LE + + P I++ + + ++ EPLFP YLFV+ PE Sbjct: 4 QWCAVNTKPKKEDFAARQLEAKGLEVFLPRISVTRKRGASKFSLWEPLFPGYLFVKLLPE 63 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD----IVDPATPYPGDKVII 118 + +N T GV + G +P VP I + A G +V + Sbjct: 64 PVQVQRVNWTPGVRRLLCAGDTPVPVPDEAIALIRQRVGPGGRLTPKPQAEFPAGSRVAV 123 Query: 119 TEGAFEGFQAIFTE-PDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G F G + + G R +LL L+ ++ + + +L Sbjct: 124 RHGPFAGLLGVVEKPMSGRGRVRVLLELLQRQTAVEIDAVDLDRL 168 >UniRef50_UPI0000E0F5F6 transcriptional activator RfaH n=1 Tax=Glaciecola sp. HTCC2999 RepID=UPI0000E0F5F6 Length = 176 Score = 138 bits (347), Expect = 9e-32, Method: Composition-based stats. Identities = 62/160 (38%), Positives = 93/160 (58%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + WYLLYCK + RA HL Q ++ P + K++RGKR V E LFPNY+F + D Sbjct: 15 KVWYLLYCKAKEEGRAVMHLANQGIDAFYPKANITKVLRGKRQTVEEALFPNYVFAQLDH 74 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEG 121 +V + T++ +TRGV FV+ G V A+I D +D A P GD V++ Sbjct: 75 DVHNFTSVRSTRGVIGFVKQGKDYQKVSQALIDVFVQCDTVDKLDSALPTKGDNVMLQHP 134 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 ++ AI+ EP GE R++LL++L+NK ++ V N++F K Sbjct: 135 QYQNIPAIYQEPKGENRAILLIHLLNKPVELVVDNSQFTK 174 >UniRef50_B8E0K4 Transcription antitermination protein nusG n=2 Tax=Dictyoglomus RepID=B8E0K4_DICTD Length = 176 Score = 137 bits (346), Expect = 1e-31, Method: Composition-based stats. Identities = 38/170 (22%), Positives = 69/170 (40%), Gaps = 11/170 (6%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPN 53 W++++ G + + LERQ + P + + GK+ + +FP Sbjct: 5 KWFVVHTLAGHEHKVKAILERQVKLNHLEDKVFEIVVPEEKVMTVKGGKKRIQVKKVFPG 64 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVY-KPKDIVDPATPYP 112 YLF+ + I T GV+ FV P+ + H + + + K+I Sbjct: 65 YLFIRMIEDEDVIRMIRNTTGVTGFVGTPGRPSTLNPQEEHWIRRFLEQKEIRPELKVKK 124 Query: 113 GDKVIITEGAFEGFQAIFTEPDGEAR-SMLLLNLINKEIKHSVKNTEFRK 161 GD+V I G F G++ E E +LL++ +E + +T+ K Sbjct: 125 GDRVYIKSGPFMGYEGFVDEVYPEKGTVRVLLSIFGRETPTEIDHTQVEK 174 >UniRef50_Q9ZK20 Transcription antitermination protein nusG n=52 Tax=Epsilonproteobacteria RepID=NUSG_HELPJ Length = 176 Score = 137 bits (345), Expect = 1e-31, Method: Composition-based stats. Identities = 31/175 (17%), Positives = 63/175 (36%), Gaps = 13/175 (7%) Query: 1 MQSWYLLYCKRGQLQRAQEHLER---------QAVNCLAPMITLEKI-VRGKRTAVSEPL 50 M WY + G Q ++ +E + + P + ++ + K + L Sbjct: 1 MMDWYAIQTYSGSEQSVKKAIENLANDHDIRDRIQEIIVPTEDIIEVSKKSKTKVMERSL 60 Query: 51 FPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT- 109 +P Y+F++ D + + I + VS F+ P + A I + Sbjct: 61 YPGYVFIKVDLDTVLWHKIQSLPRVSRFIGENKKPTPLSEADIGHILEKMNNRAAPKPKI 120 Query: 110 -PYPGDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRKL 162 G+ V + EG F F A E D + L +++ + + ++ K+ Sbjct: 121 FFEQGEVVRVVEGPFANFTATVEEYDVEHRKLKLNVSIFGRTTPIEILYSQVEKI 175 >UniRef50_B8FH43 NusG antitermination factor n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FH43_DESAA Length = 178 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 62/160 (38%), Gaps = 1/160 (0%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + WY LY K +L +++ P + + + +R + P+FP YLFV Sbjct: 10 KQWYALYTKSRHEACVNNYLAARSIESFYPQMRILSRRKDRRKMIDVPMFPGYLFVRAAL 69 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYP-GDKVIITE 120 +I G + +P I L + K+ ++ Y GD V+I Sbjct: 70 RSRQHLSILKAPGAVTLIGNTRGAIAIPEDTISSLRIVSQKEALETGPCYHAGDLVLIVS 129 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 G F G +F G + ++ ++ + + + + + + Sbjct: 130 GPFAGVTGVFMRNKGGGKILVNIDALGQSVAVEMGGADVQ 169 >UniRef50_P68893 Transcription antitermination protein nusG n=32 Tax=Streptococcus RepID=NUSG_STRP1 Length = 179 Score = 137 bits (345), Expect = 2e-31, Method: Composition-based stats. Identities = 35/171 (20%), Positives = 61/171 (35%), Gaps = 14/171 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQ---------AVNCLAPMITLEKIVRGKRTAVSEPLFP 52 + W++L G + +E+L ++ + P T+ G+ + E FP Sbjct: 7 KGWFVLQTYSGYENKVKENLLQRAQTYNMLDNILRVEIPTQTVNVEKNGQTKEIEENRFP 66 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGA---SPAIVPSAVIHQLSVYKPKDIVDP-A 108 Y+ VE + T V+ FV P + I + + + I Sbjct: 67 GYVLVEMVMTDEAWFVVRNTPNVTGFVGSHGNRSKPTPLLEEEIRAILLSMGQTIDVFDT 126 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 GD V I +GAF G + E + L+LN+ E V+ + Sbjct: 127 NIKEGDVVQIIDGAFMGQEGRVVEIENNK-VKLMLNMFGSETVAEVELYQI 176 >UniRef50_Q6AP83 Transcription antitermination protein nusG n=1 Tax=Desulfotalea psychrophila RepID=Q6AP83_DESPS Length = 177 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 30/172 (17%), Positives = 66/172 (38%), Gaps = 14/172 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQ----AVN-----CLAPMITLEKIVRGKRTAVSEPLFP 52 + WY+L G ++ + LE + + L P + ++V+G R S+ FP Sbjct: 3 KQWYILQAHSGFEEKVKLTLEDRIKKDGLEDFFGDILVPTEQVVEMVKGSRKTSSKKFFP 62 Query: 53 NYLFVEFDPEVIHTTTIN-ATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT-- 109 Y+ + + T++ V FV +P + ++ + P Sbjct: 63 GYMLINMELTDETWHTVHENMPRVVGFVGDDRNPMPLSDEEAAKIIGRIQEGSERPRPKV 122 Query: 110 -PYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEF 159 G+ V + +G F FQ + E + R +++++ +E ++ + Sbjct: 123 IFDVGENVRVIDGPFSNFQGVVDEVFPDKGRVRVMVSIFGRETPVELEFVQV 174 >UniRef50_A0Q872 Transcription antitermination protein nusG n=11 Tax=Francisella RepID=A0Q872_FRATN Length = 177 Score = 136 bits (344), Expect = 2e-31, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 63/176 (35%), Gaps = 17/176 (9%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNC----------LAPMITLEKIVRGKRTAVSEPLF 51 WY++ G +R + LE + L P + ++ G++ F Sbjct: 1 MLWYVVQVHSGYEKRVKAQLEE-NIEIAGLKNNFGRILVPTENVVEMKGGQKRKSERKYF 59 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK-----DIVD 106 P Y+ +E D + + V V P + A + ++ + + Sbjct: 60 PGYVLIEADLSTDAWNLVKSVPRVLTVVGSKGKPIPLSKAEVDRILGFVEGSKSTVEPRL 119 Query: 107 PATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 + + G+ V + EG F F + E + E R + +++ + ++ ++ K Sbjct: 120 RKSYHVGEVVRVLEGPFNDFTGVIEEVNYEKSRLRVAVSIFGRSTPVELEFSQVEK 175 >UniRef50_Q83MQ7 Transcription antitermination protein nusG n=1 Tax=Tropheryma whipplei str. Twist RepID=Q83MQ7_TROWT Length = 217 Score = 136 bits (343), Expect = 2e-31, Method: Composition-based stats. Identities = 35/180 (19%), Positives = 63/180 (35%), Gaps = 21/180 (11%) Query: 3 SWYLLYCKRGQLQRAQEHLE---------RQAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G +RA+ +LE + PM + I G+R ++ P Sbjct: 36 KWYVVHSPAGFERRAKANLETRVVSMNADQAIYQVEVPMEDVVGIRNGQRKMITRVRIPG 95 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVI-----------HQLSVYKPK 102 Y+ V D + T ++ FV P + + + K Sbjct: 96 YVLVRMDLNESSWAVVRNTPWITGFVGNMHQPVPLSFEEVFDMLKTTVSVSQTAARQKRS 155 Query: 103 DIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 V G+ V+I G+F G +E E R +L++L +E + + K Sbjct: 156 VTVSDVDLEVGETVVIKTGSFAGLPGTISEIKPENGRLTVLISLFERETPVELAFDQVEK 215 >UniRef50_B6G0A9 Transcription antitermination protein nusG n=3 Tax=Clostridiales RepID=B6G0A9_9CLOT Length = 180 Score = 136 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 31/173 (17%), Positives = 65/173 (37%), Gaps = 13/173 (7%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVN---------CLAPMITLEKIV-RGKRTAVSEPLFP 52 WY+++ G + + +ER + + P + + +G ++P Sbjct: 8 KWYVVHTYSGHENKVKATIERAVITRGMENIITHVVVPTENVVEKTPKGNEKIRQRKVYP 67 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD--PATP 110 +Y+ ++ + T+GV+ FV G+ P + + + + P V Sbjct: 68 SYVLIKMIITDESWYVVRNTKGVTGFVGPGSKPVPLSEEEVIAMGIELPAQEVVGGDVDF 127 Query: 111 YPGDKVIITEGAFEGFQAIFTEPDGEAR-SMLLLNLINKEIKHSVKNTEFRKL 162 PGD V I G+F G E + E + LL + ++ ++ K+ Sbjct: 128 EPGDVVKIINGSFAGNVGTVEEVNAEKKEVKLLTEIFGRKSPVTIGIQSIEKI 180 >UniRef50_B3EL56 Transcription antitermination protein nusG n=8 Tax=Chlorobiaceae RepID=B3EL56_CHLPB Length = 193 Score = 136 bits (342), Expect = 3e-31, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 62/173 (35%), Gaps = 13/173 (7%) Query: 3 SWYLLYCKRGQLQRAQE---------HLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY L G ++ +E LE + + P ++ GK+ ++++ FP Sbjct: 19 RWYALRIYSGHERKVKEGIELEVERQALEDKILQVYVPYEKFVEVRNGKKRSLTKNAFPG 78 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYK---PKDIVDPATP 110 Y+ +E + I V F+ P + + ++ + + V A Sbjct: 79 YVLIEAILDKQTKNLIMDIPSVMGFLGVNDIPTPLRPDEVEKILEPESTVEQRSVVEAPF 138 Query: 111 YPGDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRKL 162 GD V + +G F + + + ++++ + + ++ + + Sbjct: 139 RVGDTVKVIDGPFSSLTGVVHDVCVERMKVKVMISFFGRSTPTELDFSQVKSI 191 >UniRef50_C0QWX1 Transcription antitermination protein nusG n=2 Tax=Brachyspira RepID=C0QWX1_BRAHW Length = 195 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 30/185 (16%), Positives = 71/185 (38%), Gaps = 24/185 (12%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQ---------AVNCLAPMITLEKIVRGKRTAVSEPLFP 52 WY+++ + G + +E +E++ V+ P T+ GK+ + E +P Sbjct: 11 YKWYIVHTQHGYENKVRERIEKRAKENGMTDLIVDIYIPSETVTSTKNGKKVSKEEFFYP 70 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGAS--------PAIVPSAVI------HQLSV 98 Y+ V+ + + T GV+ F+ A+ P + + + + Sbjct: 71 GYVLVKMVMNDATQSMVRRTPGVAGFIGSHATTKEEGNIIPTPLSESDVARIFENREDKS 130 Query: 99 YKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNT 157 + + G+KV + +G F G I + + R + + + + ++ + Sbjct: 131 KTGINEIIGMEFDIGEKVQVIDGPFNGLNGIIENINSDKGRVTVKIEIFGRSTPTELEFS 190 Query: 158 EFRKL 162 + +KL Sbjct: 191 KVKKL 195 >UniRef50_B1ZPC3 Transcription antitermination protein nusG n=3 Tax=Verrucomicrobia RepID=B1ZPC3_OPITP Length = 192 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 33/179 (18%), Positives = 66/179 (36%), Gaps = 21/179 (11%) Query: 3 SWYLLYCKRGQLQRAQ---------EHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 W+ L+ GQ + + E L+ L P + ++ GK++ L+P Sbjct: 12 QWFALHTLSGQENKVKAYIDKFKKAEELDDSIFEVLLPTEIVSEVKGGKKSTKVRKLYPG 71 Query: 54 YLFVEFDP-------EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKP---KD 103 Y+F++ + GV FV G PA + + I ++ Sbjct: 72 YVFIQMRLYGEDKKVINKPWYFVKEVAGVIGFVG-GDRPAALRQSEIDEIRARIEAANGK 130 Query: 104 IVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 V G++V IT+GAF E D E + + +++ + ++ + ++ Sbjct: 131 EVPKVQYSVGEEVKITDGAFASLTGRIDEIDPERGKLKVSVSIFGRFTPVELEYWQVQR 189 >UniRef50_Q2LVW1 Transcription antitermination protein nusG n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LVW1_SYNAS Length = 167 Score = 135 bits (341), Expect = 4e-31, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 72/167 (43%), Gaps = 6/167 (3%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD- 60 SWY ++ + + L ++++ P I + + +R + PLFP YLFV+ Sbjct: 1 MSWYAVHTRSRHEDKVFTGLVQKSITTFLPKIEVWSKRKDRRKRIMTPLFPGYLFVDMPC 60 Query: 61 PEVIHTTTINATRGVSHFVR--FGASPAIVPSAVIHQLSVYKPK--DIVDPATPYPGDKV 116 + + T GV + G++P VP I + ++ + P+ G+ Sbjct: 61 LDNQAKLDVLKTFGVVRILGKPTGSAPIPVPDDKIDAIRRIVDSRVEVQNLQYPHVGEAA 120 Query: 117 IITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRKL 162 I +G F+G + + D + ++ + L+ + + + +++ K+ Sbjct: 121 RIVDGPFKGIEGTVIKTDYDKDLFVVTIELLQRSVAIKLDSSQIEKI 167 >UniRef50_Q5QWY1 Transcription antiterminator RfaH n=2 Tax=Idiomarina RepID=Q5QWY1_IDILO Length = 165 Score = 135 bits (340), Expect = 5e-31, Method: Composition-based stats. Identities = 55/157 (35%), Positives = 84/157 (53%), Gaps = 2/157 (1%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY++ K Q +RA +LE Q AP +T++K+ RG RT+V E +FP Y+FV+ D + Sbjct: 9 WYIVRTKPKQEERAILNLENQGFGVFAPELTVKKVRRGVRTSVVERMFPGYVFVKPDDII 68 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEGAF 123 + +T GV+ +RFG + VP I Q+ + D P GD V I +G F Sbjct: 69 EQFYKLRSTYGVAGVLRFGDNIPKVPQRWIDQMRGV--DQLTDEQAPQIGDTVEIQQGPF 126 Query: 124 EGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 GF A + DGE+R ++L + KE+K + E + Sbjct: 127 RGFLAKIVKLDGESRCFVMLEWMQKEVKANFSYKELQ 163 >UniRef50_D2MPP9 Transcription termination/antitermination factor NusG n=2 Tax=Erysipelotrichaceae RepID=D2MPP9_9FIRM Length = 196 Score = 134 bits (339), Expect = 6e-31, Method: Composition-based stats. Identities = 32/175 (18%), Positives = 62/175 (35%), Gaps = 15/175 (8%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSE-PLFP 52 WY++ G R +++LE++ I + ++ V + +FP Sbjct: 19 RWYVVNTYAGHENRVKDNLEKRLETMGIQESLFRIFVAEEEEIVIKKNNKSEVKKVNMFP 78 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRF---GASPAIVPSAVIHQL-SVYKPKDIVDPA 108 Y+FV+ + T GV+ F+ GA P V + + D Sbjct: 79 GYIFVQMKMTDQAWYVVRNTPGVTGFIGSSGGGAKPFPVSEDEMESILRRMGHGDQKVVV 138 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLN-LINKEIKHSVKNTEFRKL 162 GD V I G F + + + + ++ L +E + + + +KL Sbjct: 139 DFQVGDNVKILTGPFANMIGRISAMNDQTQIATVMTLLFGRETPNEISYGDLQKL 193 >UniRef50_B2UQY7 Transcription antitermination protein nusG n=2 Tax=Verrucomicrobiaceae RepID=B2UQY7_AKKM8 Length = 189 Score = 134 bits (339), Expect = 7e-31, Method: Composition-based stats. Identities = 30/180 (16%), Positives = 59/180 (32%), Gaps = 20/180 (11%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQ---------AVNCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY+L+ GQ ++ + R+ P + ++ GK+T LFP Sbjct: 9 EQWYVLHVLSGQENSVRDRIIRKAKDAELSDFIYRVEVPTELISEVRNGKKTERHSKLFP 68 Query: 53 NYLFVEF-------DPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIV 105 Y++ I GV +P + + L + V Sbjct: 69 GYVYANMYLLEADGTLNKDLWYFIQQIDGVISIAGSRNAPLPMRKREVEDLLPLLDAEAV 128 Query: 106 ---DPATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 GD V + EG F+ + E D E + + +++ + ++ + K Sbjct: 129 AARPKVEFAVGDPVRVCEGPFQSQEGTIEEIDPEKGKLRVSVSIFGRATPVDLEYWQVEK 188 >UniRef50_B3E158 Transcription antitermination protein nusG n=3 Tax=Verrucomicrobia RepID=B3E158_METI4 Length = 201 Score = 134 bits (339), Expect = 8e-31, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 72/180 (40%), Gaps = 21/180 (11%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQ---------AVNCLAPMITLEKIVRGKRTAVSEPLFP 52 WY L+ GQ ++ +++LE++ + P+ + ++ +GKR ++ L+P Sbjct: 21 MQWYALHVLSGQEEKVKKNLEKRIKTEEMQDLVGEVVIPVERVSEVRKGKRIEINRKLYP 80 Query: 53 NYLFVEFDPEVIH-------TTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK--- 102 Y+F++ + T GV F G +P +P + + + Sbjct: 81 GYVFLQIQLRDSSGKLIERAWYFVRETSGVIGF-ADGDNPLPMPREQVEGMLRQIQERTS 139 Query: 103 DIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 + GD+V + +G F + + E D E + + +N+ + ++ + K Sbjct: 140 SALPKTVFSVGDRVKVGDGPFLNSEGVIEEVDLERGKLRVSVNIFGRSTPVELEYWQVEK 199 >UniRef50_D2R5P4 NusG antitermination factor n=1 Tax=Pirellula staleyi DSM 6068 RepID=D2R5P4_9PLAN Length = 267 Score = 134 bits (338), Expect = 9e-31, Method: Composition-based stats. Identities = 27/177 (15%), Positives = 60/177 (33%), Gaps = 17/177 (9%) Query: 3 SWYLLYCKRGQLQRAQEHLERQ----AVNCL-----APMITLEK-IVRGKRTAVSEPLFP 52 WY+L + + + L R+ + P + + GKR V + ++P Sbjct: 91 EWYILKVQVNREDSIKASLLRRINMNGLERFFKDVVVPTEDVAEFTKTGKRRVVKKKIYP 150 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIH------QLSVYKPKDIVD 106 Y+ V + T G+ F P + + ++ + Sbjct: 151 GYILVNMVFNDETWFIVRETSGIGDFTGAMGKPTPMDPKDVERILRSSKMLEEDTNQVRT 210 Query: 107 PATPYPGDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRKL 162 GD+V + EG F+ F+ D R +++N+ + +++ + + Sbjct: 211 AIPFKVGDRVRVKEGYFQNFEGDIDGIDQANGRVTVMINIFGRSTPVELEHWQIEAV 267 >UniRef50_B8KUX9 Transcription termination factor nusG domain protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KUX9_9GAMM Length = 214 Score = 134 bits (338), Expect = 1e-30, Method: Composition-based stats. Identities = 53/146 (36%), Positives = 64/146 (43%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + WY++ K A+ LERQ AP I L K RGK V EPLFP YLFV Sbjct: 21 RRWYVVASKPRSEGVAKSQLERQGFVTCAPRIKLRKRQRGKWQQVIEPLFPGYLFVALRL 80 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEG 121 V I +T G VR G VP AV+ L A PG V G Sbjct: 81 GVDDPAPIRSTLGCIGLVRMGREFVPVPEAVMQPLLSIGESPDASEAVFQPGQAVRFEAG 140 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLIN 147 FEG IF P G+ R+ +L+ L+ Sbjct: 141 PFEGLSGIFKMPKGQDRAEVLITLLG 166 >UniRef50_C1A6N2 Transcription antitermination protein nusG n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A6N2_GEMAT Length = 181 Score = 134 bits (337), Expect = 1e-30, Method: Composition-based stats. Identities = 36/175 (20%), Positives = 60/175 (34%), Gaps = 17/175 (9%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA------------VNCLAPMITLEKIVRGKRTAVSEPL 50 WY + G + Q ++R+ L P + +I GK+ V + Sbjct: 5 RWYAIQTTSGHENKVQRLIQRKIDMDPAQPEDRLIRQALVPTQQVVEIKNGKKVTVERKI 64 Query: 51 FPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKP----KDIVD 106 FP Y+ VE INA +GV FV P + + +L + + Sbjct: 65 FPGYVLVEMVASQDTLHEINAIQGVIKFVGKDKDPMPLRDDEVRRLLGQADPADETPVRE 124 Query: 107 PATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFR 160 G V ITEG F F E + + + ++L + + + R Sbjct: 125 EIPFLVGQAVAITEGPFADFNGTVEEILPDKGKVRVSVSLFGRPTSVELDYLQLR 179 >UniRef50_C7PUS0 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PUS0_CHIPD Length = 174 Score = 133 bits (336), Expect = 1e-30, Method: Composition-based stats. Identities = 38/162 (23%), Positives = 67/162 (41%), Gaps = 4/162 (2%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 WY+ Y + ++ + + Q + P+ + + + PLFPNY+FV+ Sbjct: 14 KWYVAYTRANFERKVAKDIVDQQIEHYLPLRRETRKWSDRLKQIEVPLFPNYIFVKIKL- 72 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKP--KDIVDPATPYPGDKVIITE 120 H I GV V F P V I + + +DI GD+V IT+ Sbjct: 73 -QHKVNILGIPGVLSLVSFSGQPVSVSEREIQHIRKIEERGQDIALEYYYCVGDRVRITQ 131 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G F G + I G+ R +L L I++ + ++ + ++ Sbjct: 132 GIFTGMEGILLRKSGQMRFVLKLPAISQAVSVEIEGDQLERI 173 >UniRef50_Q1Q029 Similar to transcription antitermination protein NusG n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q029_9BACT Length = 169 Score = 133 bits (336), Expect = 2e-30, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 65/163 (39%), Gaps = 6/163 (3%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 W+ ++ + ++ L + ++ P++ R ++ + PLFP YLFV + Sbjct: 8 WFAVHTRSRHEKQVDSFLREKNISSFLPLVKTISRRRDRKKFIDVPLFPGYLFVNITLDN 67 Query: 64 IHTTTINATRGVSHFVRFGAS--PAIVPSAVIHQLSVYKPKDIVDP--ATPYPGDKVIIT 119 + I +TRGV + P+ +P A I+ L ++ G KV + Sbjct: 68 L--YEIKSTRGVVRIIGNEDDFIPSPIPDAEINNLKTLINSNVAIDPYKYLQKGTKVRVV 125 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G G + + + R ++ ++++ K + + + Sbjct: 126 SGPLIGLEGLLVKRKTNYRVVVSIDILQKSTSAEISIADIESI 168 >UniRef50_C6Y0K9 NGN domain protein n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y0K9_PEDHD Length = 168 Score = 133 bits (335), Expect = 2e-30, Method: Composition-based stats. Identities = 36/162 (22%), Positives = 70/162 (43%), Gaps = 3/162 (1%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 ++WY++ ++A +L + P+ +++ ++ + PLFPNYLF+ Sbjct: 8 KNWYVVVTYPNLERKALLNLLKNNFIAFLPLQKVQRKWSDRKKTIEIPLFPNYLFINI-- 65 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVI-HQLSVYKPKDIVDPATPYPGDKVIITE 120 GV +V FG PA + I + + + D+ + GD V I Sbjct: 66 NEKDRFEALDIYGVKRYVTFGGRPAFISETDILNIKRIVESVDLYIEHSLVKGDAVKIIG 125 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G F+ I + G+AR + + +N+ + + +T RK+ Sbjct: 126 GPFKDMIGILFKKSGQARFGIRVESMNQTLSIEICHTLIRKV 167 >UniRef50_Q87A27 Transcription antitermination protein nusG n=71 Tax=Proteobacteria RepID=NUSG_XYLFT Length = 185 Score = 133 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 27/184 (14%), Positives = 60/184 (32%), Gaps = 23/184 (12%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAV---------NCLAPMITLEKIVRGKRTAVSEPLF 51 M+ WY+++ G + + L + + L P + ++ G++ F Sbjct: 1 MKRWYVVHAYSGFEKSVAQALRDRISRIEIQDRFGDVLVPAEEVVEMRSGQKRRSEHKFF 60 Query: 52 PNYLFVEFD---------PEVIHTTTINATRGVSHFVR-FGASPAIVPSAVIHQLSVYKP 101 P Y+ ++ + + + T V F+ P + S + Sbjct: 61 PGYVLIQIETYYEGGVPRIDNECWHLVKETPKVMGFIGGTADRPLPISSDEADVILRRVQ 120 Query: 102 KDIVDPAT---PYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNT 157 P PG V + +G F F + E + E R + + + + + Sbjct: 121 DGAEKPRPKVLFEPGQMVRVIDGPFNDFDGLVEEVNYEKNRLRVAVLIFGRPTPVDLDFG 180 Query: 158 EFRK 161 + +K Sbjct: 181 QVQK 184 >UniRef50_C7GYQ7 Transcription antitermination protein nusG n=1 Tax=Eubacterium saphenum ATCC 49989 RepID=C7GYQ7_9FIRM Length = 198 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 66/174 (37%), Gaps = 17/174 (9%) Query: 1 MQSWYLLYCKRGQLQRAQEHLER---------QAVNCLAPMITLEKIVRGKRTAVSEPLF 51 + WY+++ G Q+ ++++ + + P +I G+R + F Sbjct: 30 VARWYVVHTYSGHEQKVKDNILKIVESRGMGDLILKINIPTEEKVEIKNGQRKSRKVKQF 89 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY 111 Y+ ++ + T+GV+ FV G P + + + + ++ Sbjct: 90 IGYILIKMKVTNESWYVVRNTQGVTGFVGQGKKPVPLTAEEV---RRLGIEKVIVNLKIK 146 Query: 112 PGDKVIITEGAFEGFQAIFTEPDGEA---RSMLLLNLINKEIKHSVKNTEFRKL 162 PGD + + G FEG E D E R+ + + +E ++ + KL Sbjct: 147 PGDTIKVINGPFEGHNGEVIEVDEEHETLRAKIF--MFGRETPVDLEYEQIDKL 198 >UniRef50_Q2JTQ7 Transcription antitermination protein nusG n=10 Tax=Synechococcus RepID=Q2JTQ7_SYNJA Length = 223 Score = 132 bits (333), Expect = 4e-30, Method: Composition-based stats. Identities = 35/182 (19%), Positives = 64/182 (35%), Gaps = 23/182 (12%) Query: 3 SWYLLYCKRGQLQRAQEHL---------ERQAVNCLAPMITLEKI-VRGKRTAVSEPLFP 52 WY + G + + L Q V + P T K+ GKR E +FP Sbjct: 40 RWYAVQVASGCENKVKSTLMQRAAALDVADQIVEVVIPKRTGFKLDRSGKRQEQEEKIFP 99 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGAS-----------PAIVPSAVIHQLSVYKP 101 Y+ V D + T V +FV P + + + ++ Sbjct: 100 GYVLVRMDLNDDTWMVVKTTPNVINFVGTEERRAYGRGRGHVTPRPLSPSEVQRIFSSVE 159 Query: 102 KDIVD-PATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEF 159 + V PGD++ + G F+GF + E + L+++ ++ ++ + Sbjct: 160 VEEVPLKIDMAPGDRIEVLSGPFQGFYGEVVDVSPERGKLKALISIFGRDTPVELEFGQV 219 Query: 160 RK 161 RK Sbjct: 220 RK 221 >UniRef50_B3T6R2 Putative transcription termination factor nusG n=2 Tax=prokaryotic environmental samples RepID=B3T6R2_9ZZZZ Length = 272 Score = 132 bits (332), Expect = 4e-30, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 61/174 (35%), Gaps = 14/174 (8%) Query: 3 SWYLLYCKRGQLQRAQEHLERQ---------AVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+L G R ++ + + P + + GK+ V++ FP Sbjct: 97 KWYILQAYSGYEGRVEQTIREKLRIKGIEHLVDEIFIPSEDIIRTKEGKKRKVNQKYFPG 156 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFG-ASPAIVPSAVIHQLSVYKPKDIVDPA---T 109 Y+ + + + VS F+ P + + ++ + A Sbjct: 157 YVLIHMELTPELWHLLMNVNRVSGFIGGTQKKPLPLDEKELEEIRSQVNEGFQQKATEDE 216 Query: 110 PYPGDKVIITEGAFEGFQAIFTEPDGEAR-SMLLLNLINKEIKHSVKNTEFRKL 162 G KV ITEG+F F E + E R +L+++ + V+ + + Sbjct: 217 YSVGQKVTITEGSFGNFSGTIDEVNLERRKLKVLVSIFGRPTPVEVEFENVKHV 270 >UniRef50_Q14PQ9 Transcription antitermination protein nusG n=1 Tax=Spiroplasma citri RepID=Q14PQ9_SPICI Length = 217 Score = 131 bits (331), Expect = 5e-30, Method: Composition-based stats. Identities = 32/185 (17%), Positives = 57/185 (30%), Gaps = 25/185 (13%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY++ C G R ++ L ++ + T+ GK + L+P Sbjct: 32 KWYVINCYSGHEDRVRDDLIQRVESLNMKDVVFDIRVIKETVSAKKGGKLIEKEKNLYPG 91 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRF---GASPAIVPSAVIHQL------------SV 98 Y+F+ + T GV+ F+ G P + + Sbjct: 92 YIFINMIMNDEAWYIVRNTTGVTGFIGSSGRGTKPFPLTDQEARTMLSKTLAAKKTATKQ 151 Query: 99 YKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSM-LLLNLINKEIKHSVKNT 157 K V A D V I G F + T+ D + L + + V+ Sbjct: 152 GKKVKKVFVANFEVNDYVRILSGTFTEMEGQVTKIDTSKGIAIVNLEMFGRLTPTEVEFD 211 Query: 158 EFRKL 162 + K+ Sbjct: 212 QCEKI 216 >UniRef50_Q6MJ02 Transcription antitermination protein nusG n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MJ02_BDEBA Length = 177 Score = 131 bits (331), Expect = 5e-30, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 68/174 (39%), Gaps = 14/174 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAV---------NCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY++ + A++ +E + L P ++ ++V+G++ S FP Sbjct: 3 KKWYIVNVQTSCENTAKKAIEEKIKSSKMEEFFGEILIPAESVVELVKGQKQTKSRKFFP 62 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGA-SPAIVPSAVIHQLSVYKPKDIVDP---A 108 Y+FV+ + + V+ FV P VP A + +++ P Sbjct: 63 GYIFVQMFLNDETWHLVRNSSKVTGFVGGTKTRPPEVPEAEVLRVTQQMAGVAEKPRPKV 122 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 G+ V + +G F FQ E + + + +L+++ + + + K Sbjct: 123 KFAVGENVTVIDGPFSNFQGTVEEINEDKAKLKVLVSIFGRPTPVELDYIQVEK 176 >UniRef50_P36265 Transcription antitermination protein nusG n=48 Tax=cellular organisms RepID=NUSG_SYNY3 Length = 205 Score = 131 bits (331), Expect = 6e-30, Method: Composition-based stats. Identities = 32/181 (17%), Positives = 65/181 (35%), Gaps = 23/181 (12%) Query: 4 WYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVR-GKRTAVSEPLFPN 53 W+ + G +R + +LE++ + P + KI + G R E +FP Sbjct: 23 WFAVQVASGCEKRVKLNLEQRIHTLDVADRILQVEIPKTPIVKIRKDGARVQGEEKIFPG 82 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGAS-----------PAIVPSAVIHQ-LSVYKP 101 Y+ + + + T V +FV P + + + Sbjct: 83 YVLIRMIMDDDAWQVVKNTPHVINFVGSEQKRHYGRGRGHVLPMPLSHGEVERIFRHVDE 142 Query: 102 KDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFR 160 ++ V GD +++ G F+ F+ E E + LL++ +E ++ T+ Sbjct: 143 QEPVVKIDMEIGDHIMVLSGPFKDFEGDVIEVSPERSKLKALLSIFGRETPVELEFTQVE 202 Query: 161 K 161 K Sbjct: 203 K 203 >UniRef50_A7BC06 Transcription antitermination protein nusG n=2 Tax=Actinomyces RepID=A7BC06_9ACTO Length = 256 Score = 131 bits (330), Expect = 7e-30, Method: Composition-based stats. Identities = 29/183 (15%), Positives = 57/183 (31%), Gaps = 23/183 (12%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+++ G ++ + +LE++ P + + + V P Sbjct: 72 DWYVIHTYSGHERKVKANLEQRITTQNMEDYIFAVEVPDEYVMEYRGNAKKRVRHVRIPG 131 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVI-------------HQLSVYK 100 Y V D + T V+ FV +P + + Sbjct: 132 YAIVCMDFNEASYRVVKETPAVTGFVGDQHNPVPLSIDEVVMLLTPNVLEEAAEAAKDQP 191 Query: 101 PKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEF 159 G+ V +T+G FE A +E E + +L+ + +E + + Sbjct: 192 APVQAVQTQFEVGEIVTVTDGPFETMSATISEIMPEAQKLKVLVTIFERETPLELGFDQV 251 Query: 160 RKL 162 KL Sbjct: 252 EKL 254 >UniRef50_A6FES1 Putative transcriptional activator RfaH n=1 Tax=Moritella sp. PE36 RepID=A6FES1_9GAMM Length = 174 Score = 130 bits (327), Expect = 2e-29, Method: Composition-based stats. Identities = 64/162 (39%), Positives = 91/162 (56%), Gaps = 3/162 (1%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + WYLLYCK + RA +L+ Q + P +T+EK +R K +FPNYLFV D Sbjct: 6 KDWYLLYCKGKEEPRALINLKNQGIESFYPTMTVEKKLRNKLICQEIAIFPNYLFVAIDK 65 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYK---PKDIVDPATPYPGDKVII 118 + +I +TRGV FV+ GA+ VP+A++ +L + K + G+ VII Sbjct: 66 NTANFNSIRSTRGVIDFVKCGANYTKVPAALVTELRATQRCRDKSANEVTVFSEGETVII 125 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 +GAF+G +AI+ DG RSMLL+NLIN SV N E + Sbjct: 126 QDGAFKGIEAIYQCKDGLERSMLLINLINHSTTMSVANGEIK 167 >UniRef50_Q01XJ6 NusG antitermination factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01XJ6_SOLUE Length = 179 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 60/161 (37%), Gaps = 4/161 (2%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 W+ + + +++ + L + AP + + + +PLFP Y+F F P Sbjct: 20 WFAVKVRSNFEKKSADILREKGYQEFAPSYPSRRYWSDRVKVIDQPLFPGYVFCRFHPN- 78 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT--PYPGDKVIITEG 121 H + T GV V FG A V + L + + G KV+I G Sbjct: 79 -HFLPVLQTAGVVQIVGFGGKLAPVDEVELASLRTLMNSSLPISQREFLHVGRKVLIRRG 137 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G + I E R ++ ++L+ + + + + Sbjct: 138 PLAGVEGILEEIRKGYRIVVSISLLQRSVTAEIDANWVTTV 178 >UniRef50_A0LIY4 NusG antitermination factor n=2 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LIY4_SYNFM Length = 212 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 30/162 (18%), Positives = 62/162 (38%), Gaps = 3/162 (1%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 +SW+ LY + + L++++++C P++ +R ++ PLFP Y+FV Sbjct: 39 KSWFALYVQVKHEKEVVRRLDQKSIDCFLPLMECWSKRLDRRKRITLPLFPGYVFVHTVL 98 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKP--KDIVDPATPYPGDKVIIT 119 + I T G ++ P +P I L K + G+ V + Sbjct: 99 DNYTNVNILKTPGALSILKNSEGPLPIPVYQIENLQTILNSSKSLDLHPYLKEGEWVRVI 158 Query: 120 EGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFR 160 G G I + R ++ ++ I + + + + Sbjct: 159 RGPLSGCVGILKRHAPKKGRLVVSVDCIRQSVSVELDVEDVE 200 >UniRef50_A6GCJ0 Transcription antitermination protein nusG n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GCJ0_9DELT Length = 176 Score = 128 bits (322), Expect = 6e-29, Method: Composition-based stats. Identities = 32/172 (18%), Positives = 61/172 (35%), Gaps = 17/172 (9%) Query: 7 LYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIVRGKRTAVSEPLFPNYLFV 57 + G ++ LE + + L P + + ++ + FP Y+FV Sbjct: 1 MNTFSGYENTVKKSLEDRIKKNELEECFEDILVPSEQVIEQRGKRQVKQTRKFFPGYIFV 60 Query: 58 EFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQL-------SVYKPKDIVDPATP 110 + T VS F+ G +P V + ++ V + + +V Sbjct: 61 RMRLTKPAWHLVKNTPKVSGFLSSGKTPKPVSQREMDRMLGKTEPKQVTEEEVVVPDIDY 120 Query: 111 YPGDKVIITEGAFEGFQAIFTEPDGEAR-SMLLLNLINKEIKHSVKNTEFRK 161 GD+V + GAF F E + E R L +++ + + V +E Sbjct: 121 SVGDQVRVKSGAFANFSGEVEEVNTEKRKIKLSVSIFGRPTRVEVDFSEVEP 172 >UniRef50_C4V5M2 Transcription antitermination protein nusG n=2 Tax=Selenomonas RepID=C4V5M2_9FIRM Length = 183 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 33/169 (19%), Positives = 63/169 (37%), Gaps = 13/169 (7%) Query: 2 QSWYLLYCKRGQLQRAQEHLER---------QAVNCLAPMITLEKIVRGKRTAVSEPLFP 52 ++WY+++ G + + +LER + + P+ ++ GK V +FP Sbjct: 16 RAWYVIHTYSGYENKVKANLERLMHSASMSEMIFDVVVPVENEIEVKDGKEKVVPRKVFP 75 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSV-YKPKDIVDPATPY 111 Y+ V+ + + T GV+ FV P + + ++ + Sbjct: 76 GYVLVDMIVDEHSWYVVRNTTGVTGFVGSEKHPIPLTAEEAERILSGSVGAEPKRRTKVN 135 Query: 112 PGDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEF 159 GD V IT GAFE + T D + ++ K + + E Sbjct: 136 VGDTVRITSGAFEDYAGKITSIDMSSMGVKVDVD--GKSLDVEIDQVEL 182 >UniRef50_B1VAN1 Transcription antitermination protein nusG n=6 Tax=Acholeplasmataceae RepID=B1VAN1_PHYAS Length = 204 Score = 128 bits (322), Expect = 7e-29, Method: Composition-based stats. Identities = 31/174 (17%), Positives = 64/174 (36%), Gaps = 14/174 (8%) Query: 3 SWYLLYCKRGQLQRAQEHLERQA---------VNCLAPMITLEKIV-RGKRTAVSEPLFP 52 WY+ G ++ L R+ N L+P T + GK+T+ L+P Sbjct: 30 RWYIAQTYLGYENTVKQDLLRRVESLGIGELISNVLSPRETYYETRADGKKTSKERNLYP 89 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGA---SPAIVPSAVIHQLSVYKPKDIVDPAT 109 Y+F+E + T ++ F+ P + I+ + Sbjct: 90 GYVFIEMIITDHSWFVVKNTPRITGFLGSSGMSSKPIPLSEKEINPVLFKMGIMSKPNYD 149 Query: 110 PYPGDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRKL 162 G KV I G+ QA + D + ++ ++L + + + ++F+++ Sbjct: 150 HLIGKKVEIISGSLANQQAKVSIIDNDREKIIVEVDLFGRTVPVEISFSDFKEI 203 >UniRef50_B0SAG6 Transcription antitermination protein nusG n=6 Tax=Leptospira RepID=B0SAG6_LEPBA Length = 184 Score = 128 bits (321), Expect = 9e-29, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 59/175 (33%), Gaps = 16/175 (9%) Query: 2 QSWYLLYCKRGQLQRAQEH---------LERQAVNCLAPMITLEKIVRGKRTAVSEPLFP 52 + WY+L G + + + LE Q + P + + ++ GK+ + L P Sbjct: 7 KKWYVLQTYSGHENKVKTNIEKMVQQQKLEDQIFSVKIPSMEVAEMKNGKKKVTKKKLMP 66 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGAS-PAIVPSAVIHQLSVYKPKDIVDPAT-- 109 Y+ VE + I VS FV P + I L + + Sbjct: 67 GYVLVEMNMTDDLRFKIQNLPSVSTFVGGKGKGPEPLSLDEIKNLFSDVGNVESEEVSRP 126 Query: 110 ---PYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFR 160 G+ + I +G F F + E + R + + + + + + + Sbjct: 127 RFLFKVGETLKIIDGPFANFTGLVDEIFPDKGRLRVRVEIFGRSTPVELDYLQVK 181 >UniRef50_A1VS68 NusG antitermination factor n=2 Tax=Polaromonas naphthalenivorans CJ2 RepID=A1VS68_POLNA Length = 184 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 33/160 (20%), Positives = 66/160 (41%), Gaps = 5/160 (3%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 W+L + + A ++L++Q + P+ K + AV EP+F Y+F Sbjct: 23 WFLAHTRPRLETVALQNLQQQGFDVYLPLYKRLKKIDAGMQAVFEPMFSRYVFFRTTSLA 82 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKP----KDIVDPATPYPGDKVIIT 119 + +TRGV+ V FG+ A + ++ + + D+ + +T PG V Sbjct: 83 QSIAPVRSTRGVAQIVSFGSEFATIRPDMLDAIRQLEQLRNAADVAELSTLRPGHLVRFC 142 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 A G + + R +LL ++ ++ V + + Sbjct: 143 NSALSGLEGVVKSVS-SCRVAVLLEIMGRQQLVRVDHHQL 181 >UniRef50_C6QI43 NusG antitermination factor n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QI43_9RHIZ Length = 175 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 36/158 (22%), Positives = 65/158 (41%), Gaps = 2/158 (1%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 W ++ + + A +L++Q AP+I PLFP YLF + Sbjct: 15 WVVVNAQAHREFVAASNLKKQGYEIYAPVIRKTTRHARISRESLTPLFPGYLFARWTAPD 74 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD--PATPYPGDKVIITEG 121 + I +T G+ VR G P+ + A++ L + ++ + G V G Sbjct: 75 MRWRPILSTVGIRSIVRNGNEPSRLDGAIVDALKAREKDGVIVRAESQREIGQIVRFARG 134 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 F+G A E + R ++L+ L+N+ K +V + Sbjct: 135 PFDGIAAEIVELCDKDRLVVLMTLLNRPTKVTVLEDQL 172 >UniRef50_Q01TC5 NusG antitermination factor n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01TC5_SOLUE Length = 193 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 41/162 (25%), Positives = 64/162 (39%), Gaps = 4/162 (2%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 W+ L Q LE + C P+ + + R + + P FP Y+F D Sbjct: 18 QWFALSVTPKLTQLVLMALEHKGYECFTPLQSSTRKRRDQVADMQVPAFPGYVFARID-- 75 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY--PGDKVIITE 120 V + T GV V +G PA V I L + + PY GD+V + E Sbjct: 76 VRFRLPVLVTPGVRGIVGYGRQPAPVDDGEIFALRRVMQSQLPAKSAPYLRTGDRVQLVE 135 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G G + + G R ++ + LIN+ + V++ R L Sbjct: 136 GPLSGLTGLLIQQKGANRVLVQVTLINQALAVDVESAWVRSL 177 >UniRef50_A4EGG1 Transcriptional antitermination protein, putative n=1 Tax=Roseobacter sp. CCS2 RepID=A4EGG1_9RHOB Length = 172 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 71/161 (44%), Gaps = 3/161 (1%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 W++L K L A+ HL RQ L P+ + + R V +PLFP YLF Sbjct: 10 WFVLQLKPNGLSLARTHLARQGFLTLMPLREVSQHARYGLRTVRQPLFPGYLFFSVTARQ 69 Query: 64 IHTTTINATRGVSHF-VRFGASPAIVPSAVIHQLSVYKPKDIV--DPATPYPGDKVIITE 120 I+ TRGV+ V PA +P+ + L +D + D A GD+V + Sbjct: 70 INWPAAANTRGVTRIVVGTDGQPARLPADIAAGLLAITTEDGMLGDVADLQTGDQVGVVN 129 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 G F G+ A D R LL++++ +E ++ + K Sbjct: 130 GPFAGWMAKVVSADTPDRIQLLVDVMGRETAVNIAGRDLEK 170 >UniRef50_C0QI35 Transcriptional antiterminator (SH3-like protein) n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QI35_DESAH Length = 174 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 33/163 (20%), Positives = 67/163 (41%), Gaps = 4/163 (2%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 +SWY L K ++++++ P I + ++ + PLFP YLFV Sbjct: 5 KSWYTLLTKSRFENVVFNDIQKKSIEVFLPKIKKRSQRKDRKLMIDVPLFPGYLFVNITL 64 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA----TPYPGDKVI 117 + + ++ T G + + + P VPSA I L + + + T G++V+ Sbjct: 65 DPVTHLSVVKTTGAVRLLGYSSGPVPVPSAHIESLKIVTGTGLDVVSGTINTLQKGERVL 124 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 + G F G + F G+ R ++ + + + + + Sbjct: 125 VVRGPFSGVKGEFLRHKGKDRVIIKIETLGQFAGVEIDREDLE 167 >UniRef50_C6XVK8 NGN domain protein n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6XVK8_PEDHD Length = 176 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 36/165 (21%), Positives = 71/165 (43%), Gaps = 5/165 (3%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 ++ WY +Y + ++A + L + + P+ + ++ V EPL +YLFV Sbjct: 10 IKKWYPVYTQSRAEKKAYQALLSKGIEAYLPLQRQLRQWSDRKKWVEEPLIKSYLFVHIA 69 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKP---KDIVDPATPYPGDKVI 117 + T + T G+S F+ F A +P I +L + + + PG+K+ Sbjct: 70 RQQQ--TEVLMTTGISRFIYFSGKIAAMPDRQIEELKLLLASPYELEITEERLLPGEKIE 127 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 I G +G + E + + +L L I+ I +V + ++ Sbjct: 128 IKAGPLKGIRGEIIEYRSQKQLLLRLGDISHSIVVNVSASLIERM 172 >UniRef50_A5TS63 Transcription antitermination protein nusG n=10 Tax=Fusobacterium RepID=A5TS63_FUSNP Length = 193 Score = 125 bits (315), Expect = 4e-28, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 69/188 (36%), Gaps = 26/188 (13%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQ----AVN-----CLAPMITLEKIVRGKRTAVSEPLF 51 ++ W++++ G ++ + LE++ L P L +IVRGK + LF Sbjct: 6 VRKWFMIHTYSGYEKKVKTDLEQKMETLGFREVVTNILVPEEELTEIVRGKPKKIYRKLF 65 Query: 52 PNYLFVEFDPEVIH-------------TTTINATRGVSHFVRFGASPAIVPSAVIHQLSV 98 P Y+ +E + + T GV+ FV G+ P + + + Sbjct: 66 PAYVMLEMEATREENEHGISYKVDPRVWYEVRNTNGVTGFVGVGSDPIPMEEEEVKNIFN 125 Query: 99 YKPKDIVDPA---TPYPGDKVIITEGAFEGFQAIFTEPDG-EARSMLLLNLINKEIKHSV 154 GD V I +G+F+ + E D R +++++ + + Sbjct: 126 IIGVKTPKETIKIDFAEGDYVKILKGSFKDQEGQVAEIDNEHGRVKVMVDIFGRMTPVEI 185 Query: 155 KNTEFRKL 162 + K+ Sbjct: 186 EVDGVLKV 193 >UniRef50_C7NC81 Transcription antitermination protein nusG n=10 Tax=Bacteria RepID=C7NC81_LEPBD Length = 207 Score = 124 bits (313), Expect = 7e-28, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 73/191 (38%), Gaps = 31/191 (16%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKI----------VRGKRTAVSEPLF 51 + WY+++ G ++ LE++ + L + +I RGK+ VS LF Sbjct: 16 KKWYIIHTYSGYEKKVAADLEKR-IESLDLTDKVFRILVPEEEVLEEKRGKQVKVSRKLF 74 Query: 52 PNYLFVEF-------------DPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSV 98 P+Y+ +E + I T GV+ FV G+ P + L Sbjct: 75 PSYVMIEMLSVKEENELGLGYRVDSDAWYVIRNTNGVTGFVGVGSDPIPLSDEEASNLLA 134 Query: 99 YKPKDIVDPA------TPYPGDKVIITEGAFEGFQAIFTEPDG-EARSMLLLNLINKEIK 151 D+ G+ V + G+F+G Q E D + ++L ++ + Sbjct: 135 KIGIDVEGETSPRIDIDFKVGEVVEVKGGSFDGQQGEIAEIDYEHGKVKVMLEVLGRLTP 194 Query: 152 HSVKNTEFRKL 162 V++TE K+ Sbjct: 195 VEVEHTEIAKI 205 >UniRef50_C0W699 Transcription antitermination protein nusG n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W699_9ACTO Length = 263 Score = 124 bits (313), Expect = 8e-28, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 69/201 (34%), Gaps = 41/201 (20%) Query: 3 SWYLLYCKRGQLQRAQEH---------LERQAVNCLAPMITLEKIVR-GKRTAVSEPLFP 52 WY+L+ G +R LE + + PM T+ ++ GK+ VS P Sbjct: 63 EWYVLHTYSGYERRVAADIMARAENFELEDYVFDAVVPMETVIEVKSAGKKKEVSRVRIP 122 Query: 53 NYLFVEFDPEV-----IHTTTINATRGVSHFVRFGASPAIVPSAVIHQ------------ 95 Y+FV D + TI T V+ FV +P + Sbjct: 123 GYVFVRMDLDDPETSDRVWRTIKDTPAVTGFVGDRYNPVPLTFDEAVSQLGPTPEEVAAK 182 Query: 96 -------------LSVYKPKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSML 141 + V G+ VI+T+G FE A +E E + + Sbjct: 183 QAAAANAAPEEGGRTQVVEGGQVYEVAFEVGESVIVTDGPFESLPATISEIHPETQKLQV 242 Query: 142 LLNLINKEIKHSVKNTEFRKL 162 L++L ++ + T+ K+ Sbjct: 243 LISLFGRDTPAELSFTQVAKI 263 >UniRef50_C9RQP0 Transcription antitermination protein nusG n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQP0_FIBSS Length = 179 Score = 124 bits (311), Expect = 1e-27, Method: Composition-based stats. Identities = 37/174 (21%), Positives = 73/174 (41%), Gaps = 16/174 (9%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQ----AVN-----CLAPMITLEKIVRGKRTAVSEPLFP 52 WY ++ GQ ++ LE+ V + P + VRGKR + LFP Sbjct: 3 MQWYAVHTFTGQENNIKKRLEQMIEREGVQDKFGRIIVPTREVVSNVRGKRRISVQNLFP 62 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHF---VRFGASPAIVPSAVIHQLSVYKPKDIVDPA- 108 Y+ +E + + + ++ GV+HF R P + + + +L P++ ++ Sbjct: 63 AYIIIEMELDELTQHLVSTINGVTHFGGMTRASRVPIPLRQSEVDRLLGVDPENSIEGEI 122 Query: 109 --TPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 G+ V I EG F+GF + E EA+ +++++ + + + Sbjct: 123 QIPYTIGENVCIKEGPFKGFVGVVDEI-MEAKIKVMVSVFGRSTPVELAFNQVE 175 >UniRef50_C7PS65 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PS65_CHIPD Length = 170 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 30/152 (19%), Positives = 64/152 (42%), Gaps = 4/152 (2%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 ++ WY LY ++ L V PM + + ++ V PLFP+Y+FV + Sbjct: 5 IEGWYALYTMPRHEKKLHTRLSELNVTSFLPMTRMLRTWHDRKKYVEMPLFPSYIFVYLN 64 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD---IVDPATPYPGDKVI 117 + H + T G ++V+ G + + +IH + + + + PG +++ Sbjct: 65 -NIEHYYNVLNTNGALYYVKTGNELSRISEQIIHYIRIVSEQSTGIELSADYFPPGKELL 123 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKE 149 I+ G GF + ++ ++L+ + Sbjct: 124 ISSGPLAGFSCEVVSYKNSEKILVRVSLLQRS 155 >UniRef50_Q7UMY8 Transcription antitermination protein nusG n=1 Tax=Rhodopirellula baltica RepID=Q7UMY8_RHOBA Length = 225 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 55/178 (30%), Gaps = 17/178 (9%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAV---------NCLAPMITL-EKIVRGKRTAVSEPLF 51 WY+L + E L ++ + + P + GKR L Sbjct: 48 MDWYILKVAFNREDSIAEALRKKVRMEDMGEYFGDIVVPSEDVATFTRDGKRRVSKRKLL 107 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA--- 108 P Y+ V + G+S F P + + + D D Sbjct: 108 PGYIMVYMSINDDTWFLVREVGGISDFTGSAGKPQPMEPEDVERFINRPAVDDEDETPIK 167 Query: 109 ---TPYPGDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRKL 162 GD+V + EG FE + D R +++N+ + + + + + L Sbjct: 168 TAIPFKVGDRVRVKEGNFENQEGEVDVVDEANGRVTVIINIFGRSVPMELDHWQVEPL 225 >UniRef50_Q1NMQ2 NGN n=3 Tax=delta proteobacterium MLMS-1 RepID=Q1NMQ2_9DELT Length = 176 Score = 123 bits (310), Expect = 2e-27, Method: Composition-based stats. Identities = 39/162 (24%), Positives = 71/162 (43%), Gaps = 6/162 (3%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY + K + + A++H Q P++ + + +R V P+FP YLF+ +PE Sbjct: 10 WYAIRTKPHKEEMARQHYLNQQYTVYLPLMRVVRSHARRRQVVFRPVFPGYLFLRLNPET 69 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD------PATPYPGDKVI 117 I+ATRG +RFG VP VI L + ++ V PG +V Sbjct: 70 CDWAAIHATRGSIGPLRFGEHYVPVPDWVIEGLQAREDEEGVIAPGAFQKEKLVPGCEVE 129 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 +T + F G+ +L++++ ++++ +V Sbjct: 130 VTMADGSAGKGFFCSFRGKENVEILMDILKRQVRTTVPLDRV 171 >UniRef50_Q1Q133 Transcription antitermination protein nusG n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q133_9BACT Length = 182 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 67/180 (37%), Gaps = 19/180 (10%) Query: 2 QSWYLLYCKRGQLQRAQEHL----ERQAVN-----CLAPMITLEKIVRGKRTAVSEPLFP 52 + W++L + + + +++L Q + L P + ++ GK+ ++P Sbjct: 3 KEWFVLRVQSNREDKVRDNLVERIRAQGMESLITNVLVPSEKISEVKGGKKRVSDRKIYP 62 Query: 53 NYLFVEFDPEV------IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD 106 Y+ VE + + TI T G F+ + P + + +L + Sbjct: 63 GYIMVEIEVDEKGQIPKEVWFTIRETSGTGEFIGGQSKPVPMTKYEVEKLLSDLDQKEER 122 Query: 107 P---ATPYPGDKVIITEGAFEGFQAIFTEPDG-EARSMLLLNLINKEIKHSVKNTEFRKL 162 P G+KV I EG FE + I E R ++L + + ++ + + Sbjct: 123 PRAKIEFNEGEKVRIKEGPFENYDGIVEEVLPASGRVKVMLTVFGRATPVELEYWQVESI 182 >UniRef50_Q04WD1 Transcription antiterminator n=4 Tax=Leptospira RepID=Q04WD1_LEPBJ Length = 179 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 35/163 (21%), Positives = 70/163 (42%), Gaps = 6/163 (3%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 WY LY ++ + L+ + + C P+I+ +K + V EP++P+Y+FV+ Sbjct: 9 EWYALYTNPRAEKKLKRLLQERKIECFLPLISKKKKWSDRWKVVEEPMYPSYIFVKISF- 67 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK-----DIVDPATPYPGDKVI 117 I G HFV + P ++P ++ + ++ + PG K++ Sbjct: 68 FQDRVKILQLPGAHHFVFYSGKPYVIPDEDLNLIRIFLETYPDRIQVEIQERLLPGKKIL 127 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 I EG F GF+A + E + ++ +N ++ + Sbjct: 128 IQEGPFAGFKAEIIQRKNEKQIIVKFPGMNLMTSVTLDIKTLK 170 >UniRef50_B0VGC6 Transcription antitermination protein nusG n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VGC6_9BACT Length = 177 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 32/173 (18%), Positives = 65/173 (37%), Gaps = 14/173 (8%) Query: 2 QSWYLLYCKRGQLQRAQEH---------LERQAVNCLAPMITLEKIVRGKRTAVSEPLFP 52 WY+++ G + + LE+Q L P+ I GK+ + LF Sbjct: 1 MKWYVIHTYSGHENKVKTAIEKGLAGTPLEKQVGRLLVPVRKTFVIREGKKIERDKKLFT 60 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVR---FGASPAIVPSAVIHQLS-VYKPKDIVDPA 108 +Y+ +E D T I GV+ F+ P + + +L + P + Sbjct: 61 SYVIMEADMTPELKTYILQIAGVTSFLGINKEHKEPIPLSQEEVDRLLGITDPNRDIKVY 120 Query: 109 TPYPGDKVIITEGAFEGFQAIFTE-PDGEARSMLLLNLINKEIKHSVKNTEFR 160 + PGD V + G F F+ I + + + ++ + + + + ++ Sbjct: 121 SYMPGDMVKVISGPFTDFEGIVQKTTENGTKLIIEVTVFGRRTPVELNASQVE 173 >UniRef50_Q3AU98 Transcription antitermination protein nusG n=6 Tax=Chlorobiaceae RepID=Q3AU98_CHLCH Length = 197 Score = 123 bits (309), Expect = 2e-27, Method: Composition-based stats. Identities = 34/164 (20%), Positives = 70/164 (42%), Gaps = 4/164 (2%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 Q+WY +Y + ++ + L + VN P+ + ++ VSEPLF Y+FV Sbjct: 8 QNWYAVYVRSRYEKKVYQALLEREVNSFLPLYETIRQWSDRKKKVSEPLFRGYVFVNIAM 67 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDP---ATPYPGDKVII 118 + + T GV F+ G P+++ I L + A+ G KV + Sbjct: 68 QQESI-KVLDTEGVVKFIGIGRKPSVIAEREIEWLKKLVREPEAISRTVASLPAGQKVRV 126 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G F+ + + + E++ ++ + I + ++ S+ + + Sbjct: 127 IAGPFKDMEGVVVKEGRESQIVIYFDSIMQGVEVSIYPDLLQPI 170 >UniRef50_C7PTI0 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PTI0_CHIPD Length = 174 Score = 122 bits (307), Expect = 3e-27, Method: Composition-based stats. Identities = 35/162 (21%), Positives = 67/162 (41%), Gaps = 4/162 (2%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 WY+LY ++ L + P+ T + + + PLFPNY+FV+ + Sbjct: 14 KWYVLYTYPLFEKKIGRQLALIDIIHYLPVKTEVRKWSDRLKRMEVPLFPNYIFVKTNL- 72 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKP--KDIVDPATPYPGDKVIITE 120 ++ T I GV FV + I+++ + +D+ + GDK+ I Sbjct: 73 -LNKTPILGIPGVVRFVSVEGRAIAISEDDINKIRQIEQSRQDVEIESVYNTGDKIRILN 131 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G F G + + R ++ L +I + + + N + K+ Sbjct: 132 GVFSGLEGELYKRSNRLRVLIKLPVIAQAVSVEISNCDIEKI 173 >UniRef50_O51355 Transcription antitermination protein nusG n=22 Tax=Borrelia RepID=NUSG_BORBU Length = 184 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 69/182 (37%), Gaps = 21/182 (11%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQ---------AVNCLAPMITLEKIVRGKRTAVSEPLFP 52 ++WY++ ++ ++ + ++ AP+ +E+I GK+ ++P Sbjct: 3 RAWYVVQTYSQYEKKIEQDIRLLINEGVFGGVVLDVKAPIEKVEEIRNGKKRIRERKIWP 62 Query: 53 NYLFVEFDPEVIHT----TTINATRGVSHFVRF--GASPAIVPSAVIHQLSV-----YKP 101 Y+ +E D + I +GV +FV G P + + + + Sbjct: 63 GYILIELDLPEVGWKDIIANIIKVQGVINFVGVSKGQRPIPINDEEVKSVFMLTGEIKAN 122 Query: 102 KDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFR 160 K I G++V I G F+ F+ + + D E + + + + + V Sbjct: 123 KSIFMLYDFEEGERVRIKGGPFDSFEGLISSIDYERKKLKVAVQIFGRSTPVEVDFQHIE 182 Query: 161 KL 162 K+ Sbjct: 183 KI 184 >UniRef50_A3V684 Transcriptional activator RfaH n=1 Tax=Loktanella vestfoldensis SKA53 RepID=A3V684_9RHOB Length = 171 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 45/159 (28%), Positives = 70/159 (44%), Gaps = 1/159 (0%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 W++ + L A +LERQ+V AP + K P FP Y+FV+ Sbjct: 10 WHIAQLRPNGLLMALRNLERQSVAHFAPTELRTERRGAKFVTRDVPAFPGYVFVQPSAAS 69 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT-PYPGDKVIITEGA 122 +N+TRG++ V G PAIVP+ +I L + + PA GD V I +G Sbjct: 70 GGVRAVNSTRGITKLVTLGQGPAIVPAGLIAALRIRFAPPDITPAPQFDQGDWVRILDGP 129 Query: 123 FEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 F F A R LL++L+ + + +V ++ Sbjct: 130 FAEFVAQVEATPAAERVYLLIDLMGRATRVAVDARSLKR 168 >UniRef50_C7PUF8 Transcription antitermination protein nusG n=4 Tax=Bacteroidetes RepID=C7PUF8_CHIPD Length = 196 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 28/177 (15%), Positives = 66/177 (37%), Gaps = 18/177 (10%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAV---------NCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+L G+ ++ +E+L+ + P+ + K+ GK+ + +P Sbjct: 20 KWYVLRVVSGKEKKVKEYLDIEVRRSDWGNVITQIFLPVEKVYKVQAGKKVMREKNFYPG 79 Query: 54 YLFVEFD---PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK----DIVD 106 Y+ +E +I GV HF+ P + A ++++ + + Sbjct: 80 YVMIEAIDGKMTDEVIQSIRNVSGVIHFLG-KDKPIALRKAEVNKMLGKVDEMSDNGLTM 138 Query: 107 PATPYPGDKVIITEGAFEGFQAIFTE-PDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G+ + I +G F F I E + + + + + + + + + K+ Sbjct: 139 SEPFIVGETIKIIDGPFNDFNGIIEEVIEDKKKLKVTVKIFGRATPVELNFMQVEKI 195 >UniRef50_B5YJ95 Transcription termination factor NusG domain protein n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YJ95_THEYD Length = 169 Score = 121 bits (305), Expect = 6e-27, Method: Composition-based stats. Identities = 29/161 (18%), Positives = 63/161 (39%), Gaps = 3/161 (1%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 +WY +Y K + + L + + P + + + ++ + PLFP YLFV + Sbjct: 7 NWYCIYVKSRHEFKVFDRLTKAGIEAFLPAVERLRRWKDRKKLIKFPLFPGYLFVCIEKS 66 Query: 63 VIHTTTINATRGVSHFVR--FGASPAIVPSAVIHQLSVYKPKDIVDPATP-YPGDKVIIT 119 + T GV F++ G I ++ + +DP G +V I Sbjct: 67 YELMLKVLKTPGVVTFIKTPSGEPEPIPEEEIVPLRKAIENGREIDPYPYLKEGQRVKIK 126 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 G G I + + + ++ ++++ + + + +E Sbjct: 127 SGPLAGATGILKKKEKQHFFIISIHILQRAVSVKIDASEVE 167 >UniRef50_Q2S1Q0 Transcription antitermination protein nusG n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S1Q0_SALRD Length = 185 Score = 121 bits (305), Expect = 7e-27, Method: Composition-based stats. Identities = 25/173 (14%), Positives = 58/173 (33%), Gaps = 16/173 (9%) Query: 4 WYLLYCKRGQLQRAQEHLE---------RQAVNCLAPMITLEKIVRGKRTAVSEPLFPNY 54 WY+L ++ + +LE Q L P T+ ++ G++ + FP Y Sbjct: 10 WYVLRTFSNHEKKVRRYLESEIERIGLEDQVEEILIPTETVFEMKGGEKKTKEKTFFPGY 69 Query: 55 LFVEFDPEVIHTTTINATRGVSHFV--RFGASPAIVPSAVIHQLSVYKPK----DIVDPA 108 + + V F+ G P + I ++ + Sbjct: 70 ILLNCTLTSDLRDLAEDLPSVIGFLTTGTGDEPTQLREEEIKRILGKMDRAEEMGEQPEM 129 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFR 160 GD V + +G F+ F I + + + +++++ ++ + + Sbjct: 130 PFKVGDPVKVVDGPFDSFNGIVEDVYPDQMKVKVMVSIFGRKTPVELDYLQVE 182 >UniRef50_C7PT75 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PT75_CHIPD Length = 174 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 32/159 (20%), Positives = 63/159 (39%), Gaps = 4/159 (2%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WYLLY + Q R + + + + P T+ + + + PLFP+Y+FV + Sbjct: 8 WYLLYTRPRQEARVAKEMADKNIQIYLPYTTVTRRWTDRIKVLEVPLFPSYVFVHLT-NM 66 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD---IVDPATPYPGDKVIITE 120 + +VRFG A V A + + V PG +++I E Sbjct: 67 HEFYYGSNLESACSYVRFGNEVARVSDAAVDAVRTIAKAGNNLEVSSERFTPGQQMMIKE 126 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 G G + G+ + ++ ++++ + I + + Sbjct: 127 GPLCGLNCEVIQYKGKDKILVRVHMLQRSIMADMPASVL 165 >UniRef50_A6EBM5 Putative uncharacterized protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6EBM5_9SPHI Length = 170 Score = 120 bits (302), Expect = 2e-26, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 63/162 (38%), Gaps = 5/162 (3%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 ++ WY + + ++A L R+ + P+ K ++ V EPL +YLFV Sbjct: 8 IKKWYPVCTQSRAEKKAYSELTRKNITSYLPLQRQMKQWSDRKKWVEEPLIRSYLFVHIS 67 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKP---KDIVDPATPYPGDKVI 117 + + T G++ F+ F A +P I QL + + + G+K+ Sbjct: 68 RQQQ--AEVLMTSGIARFIYFSGHIASMPEQQIEQLKLLTASPYELEITENNLLEGEKIT 125 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 I G +G + + ++ + +N I + + Sbjct: 126 IKAGPLQGMSGEVVAYRSQKKLLVRMTELNHAILVHIPASLI 167 >UniRef50_B4S8Z4 NusG antitermination factor n=4 Tax=Chlorobiaceae RepID=B4S8Z4_PROA2 Length = 172 Score = 120 bits (301), Expect = 2e-26, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 66/162 (40%), Gaps = 4/162 (2%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY +Y + ++ L+ + + P++ + ++ VS PLF Y+FV Sbjct: 9 WYAVYVRSRFEKKVHLLLQEKGIVSFLPLVDTWRQWSDRKKKVSMPLFRGYVFVRIHYRQ 68 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA---TPYPGDKVIITE 120 H + T GV F+ G + +++ I + + + V PG +V + Sbjct: 69 DHPFVL-DTDGVVKFIGIGRAASVIRDRDIEWIKILTGEPDVRKEVLPLLPPGKQVKVIA 127 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G F G + + + E++ ++ I + I+ ++ L Sbjct: 128 GPFVGLEGVVRKDGRESKLVVYFESIMQGIEVTINAEYLSPL 169 >UniRef50_O83264 Transcription antitermination protein nusG n=4 Tax=Treponema RepID=NUSG_TREPA Length = 185 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 33/183 (18%), Positives = 59/183 (32%), Gaps = 22/183 (12%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQA----------VNCLAPMITLEKIVRGKRTAVSEPLF 51 + WY+L+ G+ R + + + P L ++ GK+ V F Sbjct: 3 KEWYILHTFSGREARVERAVRMLVEHARIPTNVIFDIKIPEELLTEVKDGKKRVVRRKFF 62 Query: 52 PNYLFVEFDPEVIHTT----TINATRGVSHFVRFGA--SPAIVPSAVIHQLSVYKPKDIV 105 P YL VE D + + GVS F+ P V + ++ + Sbjct: 63 PGYLLVEMDLPEVDWRIVCNEVRRIPGVSGFLGSSGNAKPQAVSADEARRILQKAGEIKG 122 Query: 106 DPAT-----PYPGDKVIITEGAFEGFQAIFTEP-DGEARSMLLLNLINKEIKHSVKNTEF 159 D G +V I EG F F E + + + + + ++ + Sbjct: 123 DRTPRIAQTFLVGQQVRIVEGPFATFSGEVEEVMSERNKVRVAVTIFGRATPVELELVQV 182 Query: 160 RKL 162 L Sbjct: 183 EAL 185 >UniRef50_Q1IKV1 Transcription antitermination protein nusG n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IKV1_ACIBL Length = 194 Score = 119 bits (300), Expect = 3e-26, Method: Composition-based stats. Identities = 34/159 (21%), Positives = 60/159 (37%), Gaps = 4/159 (2%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSE-PLFPNYLFVEFDP 61 SW L+ ++ E L + V P+ ++ + ++T PLFP Y+F F Sbjct: 26 SWSALFTYPRHEKKVAEQLLCRGVESFLPLYAEKRTWKNRQTVTLTLPLFPGYVFARFAR 85 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYP-GDKVIITE 120 + + GV V + + + I +L V P GD+V IT Sbjct: 86 RDRVR--VMSLPGVVSIVERAGAVSSISDHYIEKLRAGIRLGRVRPFREAILGDRVQITS 143 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 G G + + E R ++ + +I + + V E Sbjct: 144 GPLSGLEGVLMHFRSEFRVVVSIGMIGQSVSIEVLRDEI 182 >UniRef50_A9ECY4 Putative uncharacterized protein n=1 Tax=Kordia algicida OT-1 RepID=A9ECY4_9FLAO Length = 188 Score = 119 bits (299), Expect = 3e-26, Method: Composition-based stats. Identities = 32/163 (19%), Positives = 67/163 (41%), Gaps = 5/163 (3%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGK-RTAVSEPLFPNYLFVEFD 60 ++W++LY ++A+ LE + PM +I + + + + LFP+Y+FV+ D Sbjct: 27 RNWFVLYTAPRAEKKAKLELEYRGYEVFLPMTKSLRIWKNRQKKLIDSVLFPSYIFVKTD 86 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLS--VYKPKDIVDPATPYPGDKVII 118 + I ++ ++ G P V I + + ++I G+ V I Sbjct: 87 --ERYLAEICRINKIATYIHCGGKPCKVSPECIEAIKCMLSMDQEISVGNDFIEGESVRI 144 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 EG G+ + + + + + L IN+ + + K Sbjct: 145 VEGPLAGYNGVLVQQKSKTKFGIHLKEINQVASIEICTSALEK 187 >UniRef50_Q5GRY4 Transcription antitermination protein nusG n=8 Tax=Wolbachia RepID=Q5GRY4_WOLTR Length = 278 Score = 119 bits (298), Expect = 4e-26, Method: Composition-based stats. Identities = 30/178 (16%), Positives = 67/178 (37%), Gaps = 17/178 (9%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAV---------NCLAPMITLEKI-VRGKRTAVSEPLF 51 WY+L ++ +H+ ++ P L ++ +R K+ A+ F Sbjct: 99 YKWYILRVASNYEEKVCQHVLENSMRLGVNDYFKEVFIPYEELSEVELRSKKAAMRRKCF 158 Query: 52 PNYLFVEFDPEVIHTTTINATRG---VSHFVRFGASPAIVPSAVIHQLSVY---KPKDIV 105 P Y+F+ D +N V F++ G+ P ++ I+ + + Sbjct: 159 PGYVFLYVDLCDEVLNFVNNIPKSLKVYGFLKNGSVPKVISDDEIYSMCNALYNAQETKK 218 Query: 106 DPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSM-LLLNLINKEIKHSVKNTEFRKL 162 G+KV I +G F+ F + E + + + ++++ K + + K+ Sbjct: 219 LSHGYEKGEKVKINDGLFQNFTGKVDMINDEKKIINIEVSILGKPTIIELDLAQVEKI 276 Score = 43.7 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 12/102 (11%), Positives = 26/102 (25%), Gaps = 11/102 (10%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAV--NCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 WY++ G + E + P T+ + ++V Sbjct: 6 KWYIIKVNYGHERNILELVSNAVYFKEVFIPYQTVCNSKSDIKEVCE-------VYVCMY 58 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK 102 ++ T G ++ IV ++ K Sbjct: 59 LCDESRDILSKTLGFHS--GDSSNFKIVLDEEVNLKRKEFNK 98 >UniRef50_Q8R8A2 Transcription antitermination protein nusG n=1 Tax=Thermoanaerobacter tengcongensis RepID=Q8R8A2_THETN Length = 179 Score = 119 bits (298), Expect = 4e-26, Method: Composition-based stats. Identities = 37/168 (22%), Positives = 65/168 (38%), Gaps = 14/168 (8%) Query: 4 WYLLYCKRGQLQRAQEHLERQ---------AVNCLAPMITLEKIVRGKRTAVSEPLFPNY 54 WY+++ +R +EH+ + P+ RGK + E +FP Y Sbjct: 16 WYVVFTYHNAEKRVEEHINSLAKTEKYDGLIIKAEVPVQKRTVSRRGKIKEIEEKIFPGY 75 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGD 114 +FV+ I GV+HFV G P + + + + GD Sbjct: 76 VFVKAVMTPEVMAAIRRINGVAHFVGGGNEPVPITPEEVKRARIQDDL----SEEFKAGD 131 Query: 115 KVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 V+IT+G FE F + +G + L+L ++E+ + K+ Sbjct: 132 TVMITDGPFENFIGKIIKIEGRK-INIALSLFDREMGIDFSPEQIMKI 178 >UniRef50_Q1ITB0 Transcription antitermination protein nusG n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1ITB0_ACIBL Length = 182 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 32/161 (19%), Positives = 54/161 (33%), Gaps = 4/161 (2%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIV-RGKRTAVSEPLFPNYLFVEFDPE 62 W+ + + +R E L + + P+ G V+ PLFP YLF Sbjct: 14 WFAVQTRHRHEKRVAERLRQSEIETFLPIHRAVHRWKNGINAEVNLPLFPGYLFTRLRGS 73 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY-PGDKVIITEG 121 + GV SP + I QL + +P G +V + G Sbjct: 74 QRI--PLLREPGVIAIAASSNSPTPIGDNEIAQLRLVAESVKAEPHPFLAIGQQVKVVAG 131 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G + I E R ++ + +I + + V E + Sbjct: 132 PLFGMEGILIRKKSEYRVVVSVKIIMRSVAVDVSELEIEPV 172 >UniRef50_Q2CAE9 Transcriptional antitermination protein, putative n=1 Tax=Oceanicola granulosus HTCC2516 RepID=Q2CAE9_9RHOB Length = 162 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 76/161 (47%), Gaps = 5/161 (3%) Query: 6 LLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIH 65 + K L+ A ++L RQ + P+ + +RG+ +V++P+FP YLFV P Sbjct: 1 MAQIKPNGLRLATQNLARQGLAVFCPLQQASRRIRGQIRSVTKPVFPGYLFVSLAPAGGE 60 Query: 66 TTTINATRGVSHFVRFGAS-PAIVPSAVIHQLSVYKPKD----IVDPATPYPGDKVIITE 120 + TRGV+ V S P VP A+I +L + + GD+V +T+ Sbjct: 61 MRAASYTRGVARLVTLDESGPKAVPDALIEELQARCTPEGILGPPEADQLDVGDRVWVTD 120 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 G G + EAR LLL+L+ ++ + +VK R+ Sbjct: 121 GPLAGQVSRIIALAPEARIWLLLDLMGRQTRVAVKREAVRR 161 >UniRef50_Q1D5E3 NusG-like protein n=2 Tax=Myxococcus xanthus RepID=Q1D5E3_MYXXD Length = 168 Score = 118 bits (297), Expect = 6e-26, Method: Composition-based stats. Identities = 32/162 (19%), Positives = 54/162 (33%), Gaps = 7/162 (4%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 W L + + A L + P T K K PLFP YLF + P Sbjct: 10 DWVALLVRVNHEKVAAAQLGKHGYEFFLPTYTPPKSSGVKAKL---PLFPGYLFCRYQP- 65 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDP--ATPYPGDKVIITE 120 ++ I GV + A P VP+ + + + G +V I E Sbjct: 66 -LNPYRIVRAPGVIRLLGGDAGPEAVPAQELEAIRRVADSGVSSNPCDYLRVGQRVRIIE 124 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G G + + R ++ + L+ + + V + + Sbjct: 125 GPLTGLEGSLVTSKSQLRFIVSVGLLQRSVSVEVSAEQLEPI 166 >UniRef50_B0A697 Transcription antitermination protein nusG n=1 Tax=Clostridium bartlettii DSM 16795 RepID=B0A697_9CLOT Length = 179 Score = 118 bits (296), Expect = 6e-26, Method: Composition-based stats. Identities = 26/172 (15%), Positives = 63/172 (36%), Gaps = 12/172 (6%) Query: 3 SWYLLYCKRGQLQRAQEHLER----QAVN-----CLAPMITLEKI-VRGKRTAVSEPLFP 52 WY+++ G + + +E + + + P + + GK ++P Sbjct: 8 KWYVVHTYSGHENKVKATIENSVKNRGMEDYIKQVIVPTEDVIETTKTGKEKVRQRKIYP 67 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYP 112 +Y+ ++ + T+GV+ FV G+ P + + + + K Sbjct: 68 SYVLIQMIITDESWYIVRNTKGVTGFVGPGSKPVPLSEEEVKSMGIDLDKIGEKRTEIEV 127 Query: 113 GDKVIITEGAFEGFQAIFTEPD-GEARSMLLL-NLINKEIKHSVKNTEFRKL 162 G+ V + +G F+G + E D + + + N + E+ + + Sbjct: 128 GEVVNVRDGVFKGQSGVVKELDLKNEKVKISVNNGTSGELSLELDLKSIETI 179 >UniRef50_B3ETZ5 Transcription antitermination protein nusG n=1 Tax=Candidatus Amoebophilus asiaticus 5a2 RepID=B3ETZ5_AMOA5 Length = 186 Score = 118 bits (296), Expect = 7e-26, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 59/180 (32%), Gaps = 20/180 (11%) Query: 3 SWYLLYCKRGQLQRAQ---------EHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY+L GQ + + L+ L P + ++ GKR FP Sbjct: 6 KWYVLKVVSGQEKFVKYHLDSELERRKLQDYVAQILIPSEKIYEMRAGKRQTRERNFFPG 65 Query: 54 YLFVEFDPEV-IHTTTINATRGVSHFVR-----FGASPAIVPSAVIHQLSVYKPKDIVD- 106 YL + D TI F+ + P + I+++ + D Sbjct: 66 YLILHADLSDGRVLHTIKDIPNALGFLGVRGWSSSSQPIPLREKEINKILGRVDEIAEDD 125 Query: 107 ---PATPYPGDKVIITEGAFEGFQAIFTEP-DGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G+ V I +G F GF E + + +++ + + + T+ K+ Sbjct: 126 NGLEKPFIVGETVKIVDGPFSGFTGNIQEVFEERKKLNVIVKIFERNTPIELTYTQVEKI 185 >UniRef50_A3XR75 NusG antitermination factor n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XR75_9FLAO Length = 158 Score = 118 bits (295), Expect = 1e-25, Method: Composition-based stats. Identities = 36/157 (22%), Positives = 67/157 (42%), Gaps = 6/157 (3%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 +WY+LY K ++ LE+ V P + ++ ++ + PLF +Y+FV Sbjct: 1 MNWYVLYVKPQSEKKVASALEKLGVKVFCPTLEEVRVWSDRKKKIQVPLFKSYVFVCLPN 60 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA---TPYPGDKVII 118 + A GV ++ + PA+V I + + + V T PG +V I Sbjct: 61 TE--RQQVFAVPGVVRYLFWLGKPAVVRDEEIAAIQDWLSDEAVADVQVRTYTPGTEVKI 118 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVK 155 G F+G + I E G R +++ + ++ +K Sbjct: 119 AAGHFKGQKGIVQEV-GRKRLKMVIKSLGVIVEARLK 154 >UniRef50_Q982S4 Transcription antitermination protein nusG n=1 Tax=Mesorhizobium loti RepID=Q982S4_RHILO Length = 182 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 56/169 (33%), Gaps = 9/169 (5%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRT-----AVSEPLFPNYLFV 57 WY+L + + L V + E RG+R V P FP Y+FV Sbjct: 13 RWYVLRVEDRADIAVDKLLGEANVERVMLHTECEAKRRGRRKHQSLEPVRVPSFPGYIFV 72 Query: 58 EFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD----PATPYPG 113 + + GV + P+ V I + D G Sbjct: 73 KVVSCAATWAGLRTVSGVLGPIGGCDGPSPVSEQEILKFQARIENDPEAIAVLTNALKAG 132 Query: 114 DKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 DKV I G F GF+A+ + + + +++ ++ E KL Sbjct: 133 DKVSIDSGPFAGFEAVVLMLGDKHKVHVEVDIFGRKTPIGFALAEVTKL 181 >UniRef50_B9KHV6 Transcription antitermination protein nusG n=10 Tax=Anaplasmataceae RepID=B9KHV6_ANAMF Length = 188 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 27/176 (15%), Positives = 66/176 (37%), Gaps = 16/176 (9%) Query: 3 SWYLLYCKRGQLQRAQEHLERQ-------AV--NCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY++ G ++ + + + V P + K+ K+ A+ L P Sbjct: 11 EWYIVQVSSGSEEKVAQMILERSQQLGMSGVFSEVFIPYEEVTKVKYNKKVAMRRKLSPG 70 Query: 54 YLFVEFDPEVIHTTTINATRGVSHFVRFG-ASPAIVPSAVIHQLSVYK-----PKDIVDP 107 Y+F+ + VS+F+ P ++P++ + + + + Sbjct: 71 YVFLYMRLSDDAINFVRRVPKVSNFLLDDAGLPKVIPASEMETMRSSMCRAVSSEAASEV 130 Query: 108 ATPYPGDKVIITEGAFEGFQAIFTEPDGEARSM-LLLNLINKEIKHSVKNTEFRKL 162 + GD+V+I +G F+ F + + + + + + + K K + +K+ Sbjct: 131 CSFEVGDEVVINDGLFQDFNGRVEYVNEDKKVAGVSVMIFGRLTKIEFKLSSIQKV 186 >UniRef50_A5FN19 Transcription antitermination protein nusG n=1 Tax=Flavobacterium johnsoniae UW101 RepID=A5FN19_FLAJ1 Length = 154 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 34/147 (23%), Positives = 64/147 (43%), Gaps = 5/147 (3%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 +WY++Y K ++ E L + + C P+IT K ++ V PLF +Y+F++ Sbjct: 1 MNWYVVYTKPKWEKKVAEKLTQIGIECYCPLITQVKQWSDRKKKVEMPLFNSYVFIQI-- 58 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD---IVDPATPYPGDKVII 118 E ++ G+ ++ + PA+V I+ + + + GDK+ + Sbjct: 59 EDADRNSVFEVAGIVRYLFWLGKPAVVRDEEINVIKNSLKASNIADISVSQIQVGDKIKL 118 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNL 145 GAF AI E ++L +L Sbjct: 119 ETGAFSNQNAIVQEVSKTHYILVLESL 145 >UniRef50_B4D2H1 Transcription antitermination protein nusG n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4D2H1_9BACT Length = 186 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 65/163 (39%), Gaps = 5/163 (3%) Query: 3 SWYLLYCKRGQLQRAQEHLER-QAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 WY L + A L + + + P + +++ R +E LFPNYLF F+ Sbjct: 19 KWYCLRAQPKHEHIAAARLRQCEEIQVFCPRVRIQRSTRRGLVWFTEALFPNYLFARFEW 78 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY--PGDKVIIT 119 V + + +GVS VRFG VP+ + L Y + + GD V I Sbjct: 79 -VQSHALVRSCQGVSGIVRFGDHVPEVPAGTLDDLRAYMEDAELKTVSFNIDEGDDVEIV 137 Query: 120 EGAFEGFQAIFTEPDG-EARSMLLLNLINKEIKHSVKNTEFRK 161 EG F G + + R +LL ++ + + T K Sbjct: 138 EGPFRGQNGVVKQLLPARERVKVLLEVLGGATEVDLCLTSVFK 180 >UniRef50_A9DI26 NusG antitermination factor n=1 Tax=Kordia algicida OT-1 RepID=A9DI26_9FLAO Length = 170 Score = 116 bits (292), Expect = 2e-25, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 66/163 (40%), Gaps = 6/163 (3%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 W++LY K ++ LE ++ P + ++ + PLFP+Y+FV + Sbjct: 7 WHVLYVKSRWEKKVHNSLENISIKSFLPKTKTVQQWSDRKKTILTPLFPSYVFVYIE-SP 65 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYP-----GDKVII 118 + + G ++RFG A V I+Q+ + ++ P G+ I Sbjct: 66 LDFHKALSVDGACCYIRFGKEYARVTEKEINQIKLLVDSKEIEEIELNPTFPKIGEMKKI 125 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 +G G E + + ++ ++ + + I ++ F+K Sbjct: 126 EQGPLSGLDCEIIEAENYNKIIVRISSLRQNILATIPLNSFKK 168 >UniRef50_C7PGB9 NusG antitermination factor n=1 Tax=Chitinophaga pinensis DSM 2588 RepID=C7PGB9_CHIPD Length = 185 Score = 116 bits (291), Expect = 2e-25, Method: Composition-based stats. Identities = 33/159 (20%), Positives = 62/159 (38%), Gaps = 6/159 (3%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY +Y K ++ + L R+ + P+ + ++ V EPLF +Y+FV Sbjct: 8 WYAVYTKPRWEKKVADALVRKQIETYCPINRVTHQWSDRKKIVEEPLFKSYVFVRIP--E 65 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVY---KPKDIVDPATPYPGDKVIITE 120 T + T G+ +FV + PA +P + + + V+ D + IT Sbjct: 66 DKKTLVRETSGIVNFVYWLGKPASIPDHEVELIKRFLREYQDVQVERFPIQEDDLIRITA 125 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 G E G+ +L + + +VK ++ Sbjct: 126 GPLMHQHGRVVEA-GKNTVKAVLYSMGFSLIATVKTSDL 163 >UniRef50_C6PET8 Transcription antitermination protein nusG n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PET8_CLOTS Length = 187 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 62/171 (36%), Gaps = 10/171 (5%) Query: 2 QSWYLLYCKRGQLQRAQE-------HLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNY 54 + WY++Y + G + + L ++ + L P + + KR + LFP Y Sbjct: 5 EKWYVIYTRTGDELKVKRLIELLFSKLNKKPIRVLIPKRAIIERKGKKRVEKIKFLFPGY 64 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD--PATPYP 112 +F++ + I+ F++ PA V I + + Sbjct: 65 VFIKTNMCFEIYYEISKLPHFLKFLKDEMEPAEVRDDEIRIILSLVGDSDIVGFSTGIKI 124 Query: 113 GDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRKL 162 G KV I +G +GF+ + + D R + LN+ + K+ Sbjct: 125 GGKVKIIDGPLKGFEGLIEKIDKRKGRVKVRLNVSGNANLVDLGIHIVEKI 175 >UniRef50_UPI000197AEF0 hypothetical protein BACCOPRO_00694 n=1 Tax=Bacteroides coprophilus DSM 18228 RepID=UPI000197AEF0 Length = 175 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 60/165 (36%), Gaps = 8/165 (4%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 ++WY +Y + ++ E L + V P+ + + +R + + P +F+ Sbjct: 4 ENWYAMYVRMHHEKKVAEKLGQMGVEHYLPVQEVVRQWSDRRKKLQVVVIPMMIFIRAS- 62 Query: 62 EVIHTTTINATRGVSHFV--RFGASPAIVPSAVIHQLS----VYKPKDIVDPATPYPGDK 115 E + + + VS + R PA++ + + + PG K Sbjct: 63 EQVRLSVMRNIPSVSGCLIDRCTHRPAVIRDEEMQRFRFMLDYSEEAVHFINTPLAPGQK 122 Query: 116 VIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 + + +G G TE DG+++ M+ + + + Sbjct: 123 IRVIKGPLAGLDGELTEIDGKSQVMVRIEQLGYA-SVEMPVGYVE 166 >UniRef50_B3DWJ1 Transcriptional activator RfaH, NusG family n=1 Tax=Methylacidiphilum infernorum V4 RepID=B3DWJ1_METI4 Length = 185 Score = 116 bits (290), Expect = 4e-25, Method: Composition-based stats. Identities = 43/159 (27%), Positives = 76/159 (47%), Gaps = 4/159 (2%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY L + + + A E+L+++ + P +KI K + V EPLFP YLF +F+ Sbjct: 11 WYCLSIQPKKEKLAVENLKKENIEVFFPQFQYQKIRSRKTSLVLEPLFPGYLFAKFNL-Y 69 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD--PATPYPGDKVIITEG 121 T + +T+GV V FG+S ++P + I +L + ++ + G + I EG Sbjct: 70 SKLTFVRSTKGVRKVVHFGSSYPVIPDSFIEELRIQFGEEGIKTIRERIDVGSTINIAEG 129 Query: 122 AFEGFQAIFTE-PDGEARSMLLLNLINKEIKHSVKNTEF 159 F+G+ I + R +LL + + ++ V E Sbjct: 130 PFQGYSCIVLGFIPAKERVRVLLEWLGRAVQIEVNLKEI 168 >UniRef50_Q6AIA2 Related to transcriptional activators n=1 Tax=Desulfotalea psychrophila RepID=Q6AIA2_DESPS Length = 193 Score = 116 bits (290), Expect = 4e-25, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 66/163 (40%), Gaps = 6/163 (3%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY + K + + A+ + +RQ P++ T FP YLF+ P Sbjct: 29 WYAIRTKNKKEEVAKFNYQRQGYTVYLPLLRKTVHHARSTTEKLVAFFPGYLFLNLAPAE 88 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDI------VDPATPYPGDKVI 117 + T I +TRG + FG S +P VI L + K + + PG V Sbjct: 89 QNWTAIASTRGSLGALCFGDSYIEIPGWVISDLKAREDKGLSILAKDLIKENLTPGSVVT 148 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 + E +A+ G +LLN++++++K +V + Sbjct: 149 VNIPGLESVEAVVYSIRGSENVDVLLNILSRQVKTTVSLDRIK 191 >UniRef50_D2LJZ0 NusG antitermination factor n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LJZ0_RHOVA Length = 169 Score = 115 bits (288), Expect = 6e-25, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 65/159 (40%), Gaps = 2/159 (1%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 W +L + A E+L RQ PM + PLFP Y+FVE Sbjct: 8 KWVVLTTHPHRENFAVENLARQDFTAYCPMTVKHVRHARRAYDAPRPLFPGYVFVEHQSA 67 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIV--DPATPYPGDKVIITE 120 + I T GV +R G SPA++P I L + ++ A G V I+ Sbjct: 68 FQYLRPILGTYGVRSILRIGDSPAVLPVGFIESLKAREMDGVISKPEAPLKAGQTVTISG 127 Query: 121 GAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 G F+G E R +LLL+L+N++ + V+ Sbjct: 128 GPFDGLVGQILEFRERDRVLLLLDLLNQQTRVQVEAKML 166 >UniRef50_C8VZE8 Transcription antitermination protein nusG n=1 Tax=Desulfotomaculum acetoxidans DSM 771 RepID=C8VZE8_DESAS Length = 164 Score = 114 bits (286), Expect = 9e-25, Method: Composition-based stats. Identities = 23/164 (14%), Positives = 56/164 (34%), Gaps = 5/164 (3%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAV-NCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 WY+++C G + + ++ + + + P + + +G V +FP Y+FV+ Sbjct: 1 MHWYVIHCLTGHEEDVRSRVKEKDIARAVVPRRLMVERRQGGWQYVERVVFPGYVFVQAH 60 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIV--DPATPYPGDKVII 118 + GV + + P + + G V + Sbjct: 61 MTPAAYYAMRNLPGVIRVLG-TSRPVPLMGNEVTLFLKLCRDGDPLGLSEVFVKGGSVKV 119 Query: 119 TEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 G G + + D R+ + ++L+ + + + +K Sbjct: 120 ISGPLMGLEGHIVKLDARRFRAKVNISLMGEPRIVELAVSVIKK 163 >UniRef50_B9XAW5 NusG antitermination factor n=1 Tax=bacterium Ellin514 RepID=B9XAW5_9BACT Length = 205 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 45/160 (28%), Positives = 69/160 (43%), Gaps = 5/160 (3%) Query: 4 WYLLYCKRGQLQRAQEHLER-QAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 WY + K A +L + Q V P + K R ++E LFPNY+F F E Sbjct: 34 WYCVRSKPKHEHIAAANLSKLQVVETFNPSLRSRKATRRGPVWMTESLFPNYIFARFPFE 93 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYP--GDKVIITE 120 + + TRGVS V FG VP+ VI +L P + + ++ P GD+V IT Sbjct: 94 QM-FDEVKYTRGVSSLVHFGTGYPEVPADVIEELRRNFPANELKLSSEVPTAGDQVTITS 152 Query: 121 GAFEGFQAIFTE-PDGEARSMLLLNLINKEIKHSVKNTEF 159 A G Q + + R +LL+++ + + Sbjct: 153 RALFGLQGVVLRTMPAQRRVQVLLDMLGQTSAVELNLNSV 192 >UniRef50_C5EKF0 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EKF0_9FIRM Length = 186 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 57/171 (33%), Gaps = 10/171 (5%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAV------NCLAPMITLEKIVRGKRTAVSEPLFPNY 54 M+ WY + + G+ + + L ++ + C P K +G+ LFP Y Sbjct: 1 MERWYAVQVRTGREEAVLQ-LSKKMIDGSVLKECFIPYYERMKRYQGEWHKEQYILFPGY 59 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT--PYP 112 +F+ + + G++ + G + L D + + Sbjct: 60 IFLVTEQVDELFWELKKVPGLTKILGDGMEFVPIKEEEKVILQKMGGSDHIAEMSKGYVI 119 Query: 113 GDKVIITEGAFEGFQAIFTEPDGEARSML-LLNLINKEIKHSVKNTEFRKL 162 GD V + G + + D R + + + ++ + + KL Sbjct: 120 GDIVTVISGPMKEMKGKIKFIDRHKRLAVIEIEMFGRKTEVRLGLEIVMKL 170 >UniRef50_Q5LEP1 Putative LPS-related regulatory protein n=4 Tax=Bacteroides RepID=Q5LEP1_BACFN Length = 176 Score = 113 bits (284), Expect = 1e-24, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 54/148 (36%), Gaps = 6/148 (4%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY +Y ++ +E L++ V P+ + ++ ++ + P+ P LFV E Sbjct: 15 WYAVYTAPRAEKKVKEQLDKIGVENYLPLQPVVRLWNNRKKKIFIPVVPGCLFVHISSEE 74 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD----IVDPATPYPGDKVIIT 119 I + GV+ ++ +P + P PG V + Sbjct: 75 IAH--VAGIHGVAFLLKEKGQYVSIPEVQMETFKTMIEHSCELVEFAPNEFVPGTVVRVI 132 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLIN 147 G +G +A E G + +L + + Sbjct: 133 SGQLQGLEAELVECQGNNKLLLRVEGLG 160 >UniRef50_UPI0001B49F58 putative LPS-related regulatory protein n=1 Tax=Bacteroides fragilis 3_1_12 RepID=UPI0001B49F58 Length = 177 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 27/148 (18%), Positives = 56/148 (37%), Gaps = 6/148 (4%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY +Y ++ +E L++ ++ P+ + ++ ++ + P+ P LFV E Sbjct: 15 WYAVYTAPRAEKKVKEQLDKIGIDNYLPLQPVIRMWNNRKKKIFIPVVPGCLFVYISSEE 74 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDI----VDPATPYPGDKVIIT 119 I I + GV+ ++ +P + + P PG V + Sbjct: 75 I--AQITSIHGVAFLLKEKGQYVSIPEVQMETFRTMIERSHELVEFAPTDFVPGSTVQVI 132 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLIN 147 G +G A E G + +L + + Sbjct: 133 RGQLQGLVAELVECQGNNKLLLRIEGLG 160 >UniRef50_A3I2H8 NusG antitermination factor n=1 Tax=Algoriphagus sp. PR1 RepID=A3I2H8_9SPHI Length = 170 Score = 113 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 27/163 (16%), Positives = 57/163 (34%), Gaps = 5/163 (3%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 W+++Y ++ + L P+I + ++ V +PLF Y+FV+ Sbjct: 5 KWFVMYTASRSEKKVAKRLRENGKEVYLPIIEEIRQWSDRKKKVEKPLFNGYVFVKTTRN 64 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---PYPGDKVIIT 119 + + G FV F A V + + + + G+KV + Sbjct: 65 QL-WECLQ-VPGAVKFVHFSGQHATVRDEELETIERIISTGVAVESDGSVIEAGEKVEVI 122 Query: 120 EGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 GA + E + ++ + I + + S+ + L Sbjct: 123 GGALQHMTGEVIEKGNKDYFLIRIPSIYQNMLVSIPRKFLQSL 165 >UniRef50_D2QI92 NusG antitermination factor n=2 Tax=Spirosoma linguale DSM 74 RepID=D2QI92_9SPHI Length = 161 Score = 112 bits (281), Expect = 4e-24, Method: Composition-based stats. Identities = 37/163 (22%), Positives = 67/163 (41%), Gaps = 6/163 (3%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 WY+L K + + + L + + P+I ++ + V EPLFP Y FV Sbjct: 1 MPWYVLCTKPRKEKFLAKLLAEKQIEVYCPLIRRKRRWSDRIKTVEEPLFPCYCFVNV-- 58 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK---DIVDPATPYPGDKVII 118 + + T G+ ++ + PAIV I + + + D++ + P DKV+I Sbjct: 59 KESERADVFVTPGIVRYLYWLGKPAIVKDKEIDLIKLTLNQFDHDLIHLESFNPKDKVVI 118 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 G+F G G + ++ L+ + I+ T K Sbjct: 119 NSGSFMGQGGTVVNQQG-IKVLIHLDSLQLCIRVDTSKTLIAK 160 >UniRef50_B9YBP8 Putative uncharacterized protein n=1 Tax=Holdemania filiformis DSM 12042 RepID=B9YBP8_9FIRM Length = 171 Score = 112 bits (280), Expect = 4e-24, Method: Composition-based stats. Identities = 36/170 (21%), Positives = 75/170 (44%), Gaps = 9/170 (5%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFV---- 57 +WY+L+ + G ++ ++ Q +N P + + +G V + +FP YLF+ Sbjct: 1 MNWYVLFVRGGMEEKIRDFFLSQGLNAFIPKMKVVFRKQGISELVEKIMFPGYLFIESEL 60 Query: 58 -EFDPEVIHTTTINATRGVSHFVRFG--ASPAIVPSAVIHQLSVYKPKDIVDPAT-PYPG 113 + + G+ ++F +PA+ + + +++ +T G Sbjct: 61 EQAAMDEQIKELRMQKTGIVKLLKFDKEGTPALRSEEKDYLERLLGKNKVLEHSTGLIQG 120 Query: 114 DKVIITEGAFEGFQAIFTEPDGEARSMLL-LNLINKEIKHSVKNTEFRKL 162 ++VIITEG +GF++ + D R +L L L + + SV +K+ Sbjct: 121 NQVIITEGPLQGFESQIVKIDRHKRRAVLELELCGQPRRVSVSLEIVQKI 170 >UniRef50_Q3SSD1 Transcription antitermination protein nusG n=1 Tax=Nitrobacter winogradskyi Nb-255 RepID=Q3SSD1_NITWN Length = 234 Score = 112 bits (280), Expect = 5e-24, Method: Composition-based stats. Identities = 37/183 (20%), Positives = 61/183 (33%), Gaps = 28/183 (15%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMI----TLEKIVRGK------RTAVSEPLF 51 + W++L G ++ ER+ ++ P+I + + V G + V PLF Sbjct: 33 KYWFILRTHPGCERKVMREFERRNISAYCPLIAKQQRVVRRVHGSSWTYEIKRLVQVPLF 92 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSA------------VIHQLSVY 99 P +FV GVS ++RFG A +PS IH L Sbjct: 93 PQLVFV-----PDFERVPADIGGVSGWLRFGGWRARIPSEREATSDRVACMADIHALVAI 147 Query: 100 KPKDIVDPA-TPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTE 158 A G V I +G F F D + R + + + + + + Sbjct: 148 ANTPQSKRAARFEIGALVRIVDGPFRDFSGRIERLDSKGRLKVAIEIFGRLSPTEMSEAQ 207 Query: 159 FRK 161 Sbjct: 208 IEP 210 >UniRef50_C8WL22 NusG antitermination factor n=2 Tax=Coriobacteriaceae RepID=C8WL22_EGGLE Length = 172 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 56/170 (32%), Gaps = 9/170 (5%) Query: 1 MQSWYLLYCKRGQLQRAQEHL-----ERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYL 55 M WY++ GQ + + + E P ++K ++G SE L P Y+ Sbjct: 1 MALWYVVQTVGGQEKHVLDLINKLVDEELIQESFIPQYEVKKRIQGVWKMRSEVLLPGYI 60 Query: 56 FVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA---TPYP 112 FV D + + + + + + ++ + D Sbjct: 61 FVITDQPGKLREALRSVPKFTRLLGNNDVFTPLDDQEVAFINAFTKPDHRVVEFSSGVME 120 Query: 113 GDKVIITEGAFEGFQAIFTEPDGEARSMLL-LNLINKEIKHSVKNTEFRK 161 GD+++I G + + D R L + ++ + V RK Sbjct: 121 GDEIVILNGPLMNQTGLIKKLDRHKRLAYLEIEILGRVKTVKVGLEIVRK 170 >UniRef50_A7AFP3 Putative uncharacterized protein n=2 Tax=Parabacteroides RepID=A7AFP3_9PORP Length = 180 Score = 109 bits (274), Expect = 2e-23, Method: Composition-based stats. Identities = 31/153 (20%), Positives = 58/153 (37%), Gaps = 5/153 (3%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 SWY+LY ++ ++ + V C P+ ++ + V PLF +YLFV Sbjct: 24 SWYVLYTAPRAEKQVRDRINALGVECWLPLHRAPRVWSDRVKIVELPLFNSYLFVRCTDP 83 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEGA 122 + + GV+ V + PA+V I + + + PG++V I GA Sbjct: 84 EL--RNLTRVYGVARIVYYNGKPAVVRQKEIDAIQDFLDQ--ASEHALCPGEEVEILCGA 139 Query: 123 FEGFQAIFTEPDGEARSMLLLNLINKEIKHSVK 155 + + +L L + + + Sbjct: 140 MKHVSGKVKKIKKNH-LVLYLEQLGATVCVKLD 171 >UniRef50_C4XFX3 Putative uncharacterized protein n=1 Tax=Mycoplasma fermentans PG18 RepID=C4XFX3_MYCFE Length = 205 Score = 109 bits (274), Expect = 3e-23, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 59/191 (30%), Gaps = 33/191 (17%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAV-----------------------NCLAPMITLEKIV 39 WY++ G+ + E L+ + + L P ++ Sbjct: 10 QWYMISTVSGKEDKVVEALKNRIISEQVEDCFNHEATPEGAFKIFKKPTLTPKELEKQKN 69 Query: 40 RGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRF---GASPAIVPSAVIHQL 96 + ++ Y+F+ D + T+ V+ + GA P V I + Sbjct: 70 GEEYKVKYVNMYSGYIFINMDMTDRAWFIVRNTQYVTGLIGSSGRGAKPTPVSQHQIDKS 129 Query: 97 SVYKPKDIVD------PATPYPGDKVIITEGAFEGFQAIFTEPD-GEARSMLLLNLINKE 149 + K D G+ V I +G F+G Q E + + + + K+ Sbjct: 130 FKKEIKLQEDFDKGVTHTKFQIGEIVEIIDGPFKGEQGRVLECSEANKKVTVEIEYLGKK 189 Query: 150 IKHSVKNTEFR 160 + E + Sbjct: 190 TPADFEYKEIK 200 >UniRef50_B5Y935 Transcription antitermination protein nusG n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y935_COPPD Length = 182 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 32/180 (17%), Positives = 68/180 (37%), Gaps = 19/180 (10%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQ--------AVNCLAPMITLEKIVRGKRT--AVSEPL 50 M+ WY++ G+ E ++ + + L P + K V + Sbjct: 1 MKKWYIVTTVHGKESAVAEAIKLRAENAGNTAISDVLVPKEWRLEYRGKKPRPERVQRVI 60 Query: 51 FPNYLFVEFD-------PEVIHTTTINATRGVSHFVRF-GASPAIVPSAVIHQLSVYKPK 102 +P Y+FVE + + + I T GV F+ +P V + ++ + Sbjct: 61 YPGYVFVEVEVDPEKGVIDPETWSLIRYTPGVRGFISTPDHTPIPVQDNEMEKVLQKSRE 120 Query: 103 DIVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 GD+V + +GA +G + + D E + + +++ +E+ + + RK Sbjct: 121 QEAVKVDLQTGDEVEVRDGALKGLTGVVVDVDHEKQKVFVKISMFGREVISDLDAVQVRK 180 >UniRef50_A3J1W0 Putative transcriptional regulator n=1 Tax=Flavobacteria bacterium BAL38 RepID=A3J1W0_9FLAO Length = 154 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 39/156 (25%), Positives = 62/156 (39%), Gaps = 7/156 (4%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 +WY LY K Q+ + L+ + P++ K ++ V PL P+Y+FV+ Sbjct: 1 MNWYALYTKPRNEQKVAQKLQALGIIAYCPLVLSSKQWSDRKKKVLVPLLPSYVFVQI-- 58 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD----IVDPATPYPGDKVI 117 E + + GV +V + PAI+ I L + T + + Sbjct: 59 EEQNRKDVFQVGGVVQYVFWLGKPAIIKPNEIEALKQQLDSSIPVVHFEMTTWRSNETIQ 118 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHS 153 ITEG F+G AI + LLL +N I Sbjct: 119 ITEGVFKGQDAIVDKISTNK-VRLLLKSLNMYITIE 153 >UniRef50_D1AXH4 NusG antitermination factor n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AXH4_STRM9 Length = 190 Score = 109 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 31/185 (16%), Positives = 67/185 (36%), Gaps = 28/185 (15%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQ---------AVNCLAPMITLEKIVRGKRTAVSEPLF 51 ++ WY+++ G ++ + LE++ L P + + +GK V +F Sbjct: 9 VKKWYIIHTYSGYEKKVKTDLEKRIMSEDLNDKVFRILVPEEKIFEEKKGKMVPVFRKIF 68 Query: 52 PNYLFVEF-------------DPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSV 98 P+Y+ VE + I T GV+ FV G+ P + + ++ Sbjct: 69 PSYVLVEMLAFRDVTEDSVSYRVDSRAWYIIRNTNGVTGFVGVGSDPLPMDEKEVEEIFS 128 Query: 99 YK-PKDIVDPATPYPGDKVIITEGAFEGFQAIFTEPDG-EARSMLLLNLINKEIKHSVKN 156 +D + GD V +G + D + +++ + ++ ++ Sbjct: 129 KMSNEDFQEKLEYEVGDYVKTLDG----IEGTVEHIDYIAKQIKIVIQVGSRPTTLTLGL 184 Query: 157 TEFRK 161 E K Sbjct: 185 NEVTK 189 >UniRef50_A6DRM3 Putative transcriptional activator n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DRM3_9BACT Length = 169 Score = 108 bits (271), Expect = 5e-23, Method: Composition-based stats. Identities = 42/164 (25%), Positives = 70/164 (42%), Gaps = 7/164 (4%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 WY LY K Q + P I + K+ RGK T V LFP+Y+F++ Sbjct: 5 DWYCLYTKPRQENLTAQSALDAGFPTFNPKIEVRKVRRGKATYVHAALFPSYVFIQA--N 62 Query: 63 VIHTTTINATRGVSHFVRFG--ASPAIVPSAVIHQLSVYKPKDIV--DPATPYPGDKVII 118 + RGV+ + FG +P+ ++ LS + ++ D GDKV + Sbjct: 63 EGNLDKARYLRGVNRIIGFGRDGESLKIPAVILETLSTFLEDNVYKHDMHELKDGDKVQV 122 Query: 119 TEGAFEGFQAIFTE-PDGEARSMLLLNLINKEIKHSVKNTEFRK 161 +G +G +AIF + R+++L L + + V + K Sbjct: 123 LDGPLKGVEAIFKKGLKDGERAVVLFELFSNYQEAKVNIEDLIK 166 >UniRef50_Q1QKQ8 Transcription antitermination protein nusG n=1 Tax=Nitrobacter hamburgensis X14 RepID=Q1QKQ8_NITHX Length = 196 Score = 108 bits (271), Expect = 6e-23, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 71/187 (37%), Gaps = 31/187 (16%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKR--------TAVSEPLFPNYL 55 WY+L + +A L + + AP++ ++ G+R ++ P+FP Y+ Sbjct: 7 WYVLQTRPAHEDKAARGLVARGFDPYAPVVYR-RVPTGRRDDKGRKLTREIARPMFPGYI 65 Query: 56 FVEFDPEVIHTTTINATRGVSHFVR-FGASPAIVPSAVIHQLSVYKPKD----------- 103 FV+FD + G++ +++ P VP + ++V + ++ Sbjct: 66 FVQFDAGDEKFAEVRIVPGITGYLKDEAGEPQAVPDVAMDLIAVSETEEFGRYLDEEERA 125 Query: 104 ----------IVDPATPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHS 153 P GD V + G ++ + ++ D R +LL ++ +E K Sbjct: 126 RRAALRASKRKRGPPEFKAGDDVRVVRGEWKDWIMKVSKADDLGRVVLLFHIFGRETKIH 185 Query: 154 VKNTEFR 160 + Sbjct: 186 ADQADLE 192 >UniRef50_A7FC44 Transcriptional activator n=1 Tax=Yersinia pseudotuberculosis IP 31758 RepID=A7FC44_YERP3 Length = 159 Score = 108 bits (269), Expect = 9e-23, Method: Composition-based stats. Identities = 62/163 (38%), Positives = 86/163 (52%), Gaps = 19/163 (11%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVR--GKRTAVSEPLFPNYLFVE 58 M++WYLL K GQ+ R Q L+R VN +P I ++K+ G V+EP+FP YLFVE Sbjct: 1 MKNWYLLSYKYGQVNRVQFGLDRLGVNSFSPSIQVKKVRSDSGTIRLVNEPMFPTYLFVE 60 Query: 59 FDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVII 118 FD E IHTTTI++T GV++FV+FG P +P ++IHQL + Sbjct: 61 FDIESIHTTTISSTLGVNYFVKFGTEPKPIPLSLIHQLMN----------------RSEC 104 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 + E I T PD + R L + LI + I S + K Sbjct: 105 SSQRNEEIDEIATIPDKKLRCALFIKLITQ-IPDSFEQNSLIK 146 >UniRef50_A6L3Q7 Putative transcriptional regulator UpxY-like protein n=57 Tax=Bacteroides RepID=A6L3Q7_BACV8 Length = 166 Score = 108 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 26/166 (15%), Positives = 62/166 (37%), Gaps = 5/166 (3%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M+ W + Y + ++ E L + P+ + ++ + + P +FV D Sbjct: 1 MKKWLVAYVRLHHEKKTAERLTAMNIENFLPVQEEIRQWTYRKKKIKRVVIPMMIFVHVD 60 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKP--KDIVDP--ATPYPGDKV 116 + + +PA++P + + + V+ A PG+ + Sbjct: 61 AAERSQVLTLSAISRYMVLHGEHTPAVIPDEQMERFKFMLDYSDEAVEMCTAPLAPGELI 120 Query: 117 IITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 + +G +G + E DG+A+ ++ L+L+ + K+ Sbjct: 121 RVVKGPLKGLEGELVEVDGKAKVVVRLDLLGCA-GVDMPVGFVEKM 165 >UniRef50_B8IAM8 Transcription antitermination protein nusG n=2 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IAM8_METNO Length = 255 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 34/165 (20%), Positives = 59/165 (35%), Gaps = 5/165 (3%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIV-RGKRTAVSEPLFPNYLFVEFD 60 + W+++ K +RA + L + + + +E + G+R V PL LFV Sbjct: 90 RRWHVMVAKPRFARRAAKDLTKAGIPAVLTDERVELVEESGRRRIVKRPLLRRVLFVGLP 149 Query: 61 PEVIHTTTINATRGVSHFVRFG-ASPAIVPSAVIHQLSVYKPKD--IVDPATPYPGDKVI 117 T V VR G VP+ + + DP PGD++ Sbjct: 150 RCAAPEVVHRETYFVRDAVRDGCGRAIQVPADQLRRFVRALADTLTERDPNAFEPGDEIR 209 Query: 118 ITEGAFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRK 161 I G F F I + D R + + + + + +E + Sbjct: 210 IKSGPFASFHGIIEDADYATRRLKVAVEIFGRPSPVGLDFSEVER 254 >UniRef50_Q2ST07 Transcription antitermination protein nusG n=4 Tax=Mollicutes RepID=Q2ST07_MYCCT Length = 214 Score = 107 bits (268), Expect = 1e-22, Method: Composition-based stats. Identities = 29/193 (15%), Positives = 58/193 (30%), Gaps = 33/193 (17%) Query: 3 SWYLLYCKRGQLQRAQEHLERQ------AVNCLAPMITLEKIVRGKRTAVSEPLFPNYLF 56 W+++ C+ G ++ L+++ + I+ V A + FP Y+F Sbjct: 19 QWFVISCQTGHEEKVLGDLQQKIKSASIEDEVFSIKISKANQVSKSGKASIKNKFPGYIF 78 Query: 57 VEFDPEVIHTTTINATRGVSHFVRF---GASPAIVPSAVIHQLSVYKPKDIVD------- 106 + I T GV+ F+ GA P+ + + V ++I Sbjct: 79 INMIMSEKAWFLIRNTPGVTGFIGSSGRGAKPSPLTIEETLNMLVPNIEEIQQAHEEEKE 138 Query: 107 ----------------PATPYPGDKVIITEGAFEGFQAIFTEPDGEARSM-LLLNLINKE 149 A GD V + G E + + D + + + + Sbjct: 139 QETKQKNEAVAKKALFTADFKIGDIVKVKSGIHENEEGTVKDMDYSKGVAFVAIEMFGRW 198 Query: 150 IKHSVKNTEFRKL 162 V + Sbjct: 199 TTLEVSFKNVEPI 211 >UniRef50_A5CC98 Transcription antitermination protein nusG n=2 Tax=Orientia tsutsugamushi RepID=A5CC98_ORITB Length = 184 Score = 107 bits (267), Expect = 1e-22, Method: Composition-based stats. Identities = 30/174 (17%), Positives = 66/174 (37%), Gaps = 14/174 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHL----ERQAV-----NCLAPMITLEKIVRGKRTAVSEPLFP 52 WY++ G ++ + ++ + + P I + K+ RGK V++ P Sbjct: 9 YQWYIIRT-SGSESSIKQTILEKAAKKGIAHCFEEIIIPGIQVVKMKRGKAINVNKKTMP 67 Query: 53 NYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDP---AT 109 Y+ ++ D + ++ F + V + ++ V DP Sbjct: 68 GYILIKMDMIDQVKDFMQKVVKLNRFPGNESKIVQVTEKEVQEMMVQLENKAQDPSFLEK 127 Query: 110 PYPGDKVIITEGAFEGFQAIFTEPDGEARS-MLLLNLINKEIKHSVKNTEFRKL 162 G++V + +G FE F E D + L +++ + + +V ++ KL Sbjct: 128 YQIGEEVRVNDGPFETFVGRIEEVDYAKKILKLSISIFQRSTELTVDFSQVEKL 181 >UniRef50_O84322 Transcription antitermination protein nusG n=14 Tax=Chlamydiales RepID=NUSG_CHLTR Length = 182 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 29/176 (16%), Positives = 73/176 (41%), Gaps = 15/176 (8%) Query: 1 MQSWYLLYCKRGQLQRAQEHLER----QAV-----NCLAPMITLEKIVRGKRTAVSEPLF 51 M WY++ Q ++ ++ LE + + P + ++ +G+ V + ++ Sbjct: 1 MFKWYVVQVFTAQEKKVKKSLEDFKEASGMSDFIQQIILPSENVMEVKKGEHKIVEKYIW 60 Query: 52 PNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK---DIVDPA 108 P YL V+ + + T+GV F+ G +P + + + + +V Sbjct: 61 PGYLLVKMHLTDESWSYVKKTQGVVEFLG-GGAPVALSEEEVKNILADLEEKKSGVVQKH 119 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEP-DGEARSMLLLNLINKEIKH-SVKNTEFRKL 162 G +V I +G F F + +E + R +++++ +E + ++ + ++ Sbjct: 120 KFEVGSQVKINDGVFVNFVGVVSEVFHDKGRLSVMVSIFGRETRVDDLEFWQVEEV 175 >UniRef50_B8IE36 NusG antitermination factor n=3 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IE36_METNO Length = 196 Score = 106 bits (264), Expect = 3e-22, Method: Composition-based stats. Identities = 38/158 (24%), Positives = 53/158 (33%), Gaps = 4/158 (2%) Query: 5 YLLYCKRGQLQRAQEHLERQAVNCLAPMIT-LEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 Y RA E L++ LAP T + + + V P+FP Y FV Sbjct: 37 YAASVAGHGEYRACEWLQQAGFATLAPGRTAVVRQASSGKRLVRRPVFPGYAFVG-KRPE 95 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPY--PGDKVIITEG 121 I GV V G +P +P ++ L D P GDKV I + Sbjct: 96 QSWRDILRVPGVRALVTTGEAPTELPPWMMKMLIAADEMGAYDRPRPQLAVGDKVRIRDE 155 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 ++G R +LL K+ SV Sbjct: 156 LWQGLIGEVMRAPEGRRIAVLLKAFGKKHVLSVDVDRL 193 >UniRef50_C8WIA3 NusG antitermination factor n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WIA3_EGGLE Length = 170 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 57/167 (34%), Gaps = 9/167 (5%) Query: 4 WYLLYCKRGQLQRAQEHLERQA-----VNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVE 58 WY++ G+ +E C P ++K RG+ + LFP YL V Sbjct: 2 WYVVQTVAGREFAVCRLIESLVEDDVLQECFVPRYEVQKQFRGQWRTCTATLFPGYLIVV 61 Query: 59 FDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIV---DPATPYPGDK 115 D + + + + + + + + K GD+ Sbjct: 62 TDRVDELESQLRRVPAFAWVLSNDGGFVPLERDEVAWIDAFTEKGHRTVGVSEGVIEGDR 121 Query: 116 VIITEGAFEGFQAIFTEPDGEARSMLL-LNLINKEIKHSVKNTEFRK 161 +I+ +G G + + + R+ L +++ + I+ + RK Sbjct: 122 IIVLKGPLVGREGWIRKINRRKRTAYLEIDMFGRTIQTKIGLGIVRK 168 >UniRef50_B8IIP1 Transcription antitermination protein nusG n=2 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IIP1_METNO Length = 230 Score = 105 bits (263), Expect = 4e-22, Method: Composition-based stats. Identities = 34/173 (19%), Positives = 64/173 (36%), Gaps = 13/173 (7%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP- 61 W+L+ C+ G+ ++ + L A+ L + ++ G+ PLF LFV DP Sbjct: 58 RWHLVDCRAGKARQFADALAAGAIPALRLSEEVVRVRSGRPIRTRMPLFGRLLFVGLDPH 117 Query: 62 -EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD----------PATP 110 E H R + +VP + Q + D+ Sbjct: 118 SEDAHWLRDKYDREIKGVRFRDEKFMLVPGRELDQFTGVLGGDVPPAERRTGAALTVEDF 177 Query: 111 YPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVKNTEFRKL 162 G+ V + +G F F + E D E + +++ + +++ T+ KL Sbjct: 178 EIGEAVRVADGPFASFSGLVEEIDAESQNLKVSVSIFGRSTPVTLEPTQVEKL 230 >UniRef50_Q7D1F8 Transcription antitermination protein n=1 Tax=Agrobacterium tumefaciens str. C58 RepID=Q7D1F8_AGRT5 Length = 188 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 30/175 (17%), Positives = 55/175 (31%), Gaps = 15/175 (8%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITL--EKIVRGKRTAVSEPLFPNYLFVEFD 60 W+++ K + ++ L + V P+ T+ + AVS PL P Y+ V Sbjct: 14 EWFVVETKHKAEKAVEDALRKAGVKVFLPLETIGETVVRGRIIPAVSRPLLPGYVLVNIV 73 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT----PYPGDKV 116 I GV+ FV P V +++ + + GDKV Sbjct: 74 YSPAAVCGIARLEGVAGFVGGMVHPHRVSDEEMNRFKAFGDDETAPDVKHCEQFKRGDKV 133 Query: 117 IITEGAFEGFQAIFTEPDGEARS---------MLLLNLINKEIKHSVKNTEFRKL 162 G F F + + ++ +++ K +L Sbjct: 134 RFVLGPFASFGGNILKLRKDRAVDGERVATGAVVAVDVFGKVSTIEAPLALLEQL 188 >UniRef50_C3RLT4 NusG antitermination factor n=2 Tax=Bacteria RepID=C3RLT4_9MOLU Length = 173 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 35/169 (20%), Positives = 64/169 (37%), Gaps = 9/169 (5%) Query: 2 QSWYLLYCKRGQLQRAQ---EHLERQAV--NCLAPMITLEKIVRGKRTAVSEPLFPNYLF 56 ++WY++ + G+ ++ + E L + + C P K +G V E LF Y+F Sbjct: 3 ENWYVIQVRTGKEEKIKNTCEKLISRDILEECFIPKCIRLKKYQGTWKEVDEVLFKGYVF 62 Query: 57 VEFDPEVIHTTTINATRGVSHFVRFGASPA--IVPSAVIHQLSVYKPKDIVDPAT-PYPG 113 + D + ++ + I+ I L K K IVD + G Sbjct: 63 MISDHIDELFNKLKLIPDLTKVLGNDGEFICPILKEEAIFLLKFGKEKHIVDLSQGYIEG 122 Query: 114 DKVIITEGAFEGFQAIFTEPDGEARSM-LLLNLINKEIKHSVKNTEFRK 161 DK+ I G G++ + + D R + + L ++ V K Sbjct: 123 DKINIISGPLVGYEGMIKKIDRHKRVAYIEVKLFDQITMVQVGLEIIGK 171 >UniRef50_Q2RYZ3 Putative uncharacterized protein n=2 Tax=Salinibacter ruber DSM 13855 RepID=Q2RYZ3_SALRD Length = 280 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 31/162 (19%), Positives = 62/162 (38%), Gaps = 7/162 (4%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 W + Y + ++ + L+ + ++ + P T + + ++EPLF NYLF D Sbjct: 116 WRVFYTRARAEKKCETRLDERRIDVMVPKKTEVRQWSDRTKEITEPLFRNYLFARVD--E 173 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA---TPYPGDKVIITE 120 + T G+ V F PA + + +L + P G+ V IT Sbjct: 174 KDRLRVLRTNGIVRCVHFDGEPARLREETVDRLQKAQAVPERLSTADLRPAVGETVTITG 233 Query: 121 GA--FEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 G +G + G+ ++ + + + +K V + Sbjct: 234 GPERLQGLTGKVLQHRGQTYLLVQVRAVRQAVKIEVAADWVQ 275 >UniRef50_C3MAS1 Putative uncharacterized protein n=1 Tax=Rhizobium sp. NGR234 RepID=C3MAS1_RHISN Length = 169 Score = 104 bits (261), Expect = 7e-22, Method: Composition-based stats. Identities = 35/170 (20%), Positives = 57/170 (33%), Gaps = 10/170 (5%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIV--RGKRTAVSEPLFPNYLFVE 58 M WY++ + GQ Q+A E V PM+ E K PLF Y+F Sbjct: 1 MGHWYVVRTRAGQQQKATREFEDNGVTVYCPMLRRETRHFQSKKWLMKECPLFTGYVFAY 60 Query: 59 FDPEVIHTTTINATRGVSHFVR-FGASPAIVPSAVIHQLSVYKPKDIVDPATPYP----- 112 T+ R V + G +P V ++ + + + D P Sbjct: 61 LRISD--FGTLREMRHVLSVLADAGGTPIPVAGNIVEDIRDAQERGDFDVLRPPVRRLKA 118 Query: 113 GDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 GD V + +G G A T G + + + + R++ Sbjct: 119 GDTVQVKDGPLTGHYAAVTNIVGRRAIKAFVEIFGSLREVEIGLESIRRV 168 >UniRef50_Q4A951 Transcription antitermination protein n=4 Tax=Mycoplasma RepID=Q4A951_MYCHJ Length = 190 Score = 104 bits (261), Expect = 7e-22, Method: Composition-based stats. Identities = 25/186 (13%), Positives = 55/186 (29%), Gaps = 24/186 (12%) Query: 1 MQSWYLLYCKRGQLQRAQEHLER-----------QAVNCL-APMITLEKIVRGKRTAVSE 48 + WY++ + A L+ Q + P G++ Sbjct: 3 IYKWYMISTISSKEDTAISLLKNRIKYENLEEHFQEITKFDVPYYEENPNKPGEKKLKYR 62 Query: 49 PLFPNYLFVEFDPEVIHTTTINATRGVSHFVRF---GASPAIVPSAVIHQLSVYKPKDIV 105 L+ Y F++ + + T+ V+ V G P + ++ + I+ Sbjct: 63 NLYKGYFFIKMNMVDKAWFVVRNTQYVTGLVGSHGRGTKPTPISPRQFERMRKKWDQQIL 122 Query: 106 DPAT-------PYPGDKVIITEGAFEGFQAIFTEPDGEAR-SMLLLN-LINKEIKHSVKN 156 + GD V +T G F E + + L + + + + Sbjct: 123 NFQQTNDGTINWEIGDWVKVTHGPFSDDFGKIIEMNVTKTLITVELESVFGRRTPATFEY 182 Query: 157 TEFRKL 162 +K+ Sbjct: 183 KNLKKV 188 >UniRef50_A4YU22 Transcription antitermination protein nusG n=1 Tax=Bradyrhizobium sp. ORS278 RepID=A4YU22_BRASO Length = 201 Score = 104 bits (261), Expect = 7e-22, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 50/171 (29%), Gaps = 14/171 (8%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITL----EKIVRG----KRTAVSEPLFPNYL 55 WY+L + + + ++ P++T+ ++ RG +R V PL + Sbjct: 31 WYILRTHPHCEAKVMKAFRLRNISAYLPVMTVSKEFRRMRRGFEWIERRDVVSPLILGAV 90 Query: 56 FVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT----PY 111 + G +RFG + + + + + Sbjct: 91 LI--PDFEERWQCWRGVDGAVGLLRFGEWTPRLTPKLFQDIRKIEDIANTPKSKRARAFE 148 Query: 112 PGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G V + G F F A D R + + + + E + Sbjct: 149 VGQLVRVLSGPFRYFSARVERIDSRGRLSVGAEIFGRITPIDIDEGEIEAV 199 >UniRef50_UPI0001692BF2 putative transcription antiterminator n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001692BF2 Length = 176 Score = 104 bits (261), Expect = 7e-22, Method: Composition-based stats. Identities = 28/173 (16%), Positives = 58/173 (33%), Gaps = 15/173 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLER----QAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFV 57 WY+L+ G+ +++ ++ C P + + +G R V LFP Y+F+ Sbjct: 1 MLWYVLFVTTGKEDVVGKYISNFCNHLSLQCFIPKKVVPECHKGVRRDVIRVLFPGYIFI 60 Query: 58 EFDPEVIHTTTINATRGVSHFVRFGAS--------PAIVPSAVIHQLSVYKPKDIVDPAT 109 + + + V G + +P + + + Sbjct: 61 RTTMSSNLYYLLKEIPNLHYLVNSGDRKKDKSCGFYSAIPEEEMEWIRDLTGNRDTIEYS 120 Query: 110 PY--PGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEF 159 KV + G +G +A+ + D R+ + + L+NK V Sbjct: 121 EVSIINKKVKVISGPLKGKEAMIKKVDKRKRRAKIEVTLLNKTNLVDVGINIL 173 >UniRef50_A6E8J5 Transcription antiterminator n=1 Tax=Pedobacter sp. BAL39 RepID=A6E8J5_9SPHI Length = 173 Score = 104 bits (261), Expect = 8e-22, Method: Composition-based stats. Identities = 31/145 (21%), Positives = 61/145 (42%), Gaps = 6/145 (4%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 +Q W+ +Y + ++ ++ L+ Q + C P+ ++ + V PLF +Y+FV Sbjct: 11 VQKWFAVYTRPRWEKKVEQQLKMQGITCYCPLRKVQSQWADRIKVVELPLFSSYVFVCIH 70 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK----DIVDPATPYPGDKV 116 P + GV +FV + A + +VI ++ K +IV GD+V Sbjct: 71 PREEL--NVRLNIGVVNFVYYMGHLAEIRHSVIEEIKSNLEKYPDAEIVSMRDLEVGDRV 128 Query: 117 IITEGAFEGFQAIFTEPDGEARSML 141 I G + + G+ ++ Sbjct: 129 RIKAGLMGEQEGKVLQVRGKNVLLV 153 >UniRef50_C8WIE4 Transcription antitermination protein nusG n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WIE4_EGGLE Length = 170 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 32/167 (19%), Positives = 56/167 (33%), Gaps = 9/167 (5%) Query: 4 WYLLYCKRGQLQRAQEHLERQA-----VNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVE 58 WY+ + G+ E R +C P + +RG+ V LFP YLF Sbjct: 2 WYVAQVQAGRESSTLEMCRRLVPPSVMEDCFMPEYEVMWKIRGEWRLVKRLLFPGYLFFV 61 Query: 59 FDPEVIHTTTINATRGVSHFVRF-GASPAIVPSAVIHQLSVYKPKDIVDPAT--PYPGDK 115 D ++ + S + + + + GDK Sbjct: 62 TDDPEALNRELSRVPMPIRLLGNEENSFFPLTGKERDWFLSFMDGNHTVRMSEGYISGDK 121 Query: 116 VIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 + +T G GF+ + D R+ + ++L + + SV RK Sbjct: 122 ITVTRGPLMGFEGDIRKIDRHKRRAYIDVSLFGRTVPASVGLEIVRK 168 >UniRef50_O67757 Transcription antitermination protein nusG n=7 Tax=Aquificales RepID=NUSG_AQUAE Length = 248 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 22/133 (16%), Positives = 46/133 (34%), Gaps = 2/133 (1%) Query: 32 MITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSA 91 IT ++ + + +FP Y+ ++ I T V V G P + Sbjct: 116 KITCKENKTEAKIVLDNKIFPGYILIKAHMNDKLLMAIEKTPHVFRPVMVGGKPVPLKEE 175 Query: 92 VIHQLSVYKPKDI-VDPATPYPGDKVIITEGAFEGFQAIFTEPDGEAR-SMLLLNLINKE 149 + + + + GD+V + EG F F E E R +++++ + Sbjct: 176 EVQNILNQIKRGVKPSKVEFEKGDQVRVIEGPFMNFTGTVEEVHPEKRKLTVMISIFGRM 235 Query: 150 IKHSVKNTEFRKL 162 + + K+ Sbjct: 236 TPVELDFDQVEKI 248 >UniRef50_Q48MX6 Transcriptional activator RfaH n=1 Tax=Pseudomonas syringae pv. phaseolicola 1448A RepID=Q48MX6_PSE14 Length = 192 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 37/148 (25%), Positives = 61/148 (41%), Gaps = 2/148 (1%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + WYL+ CK GQ RA+E+L Q P I R T + PLFP YLF+ Sbjct: 42 KEWYLVQCKSGQDSRAEENLTAQGYANFRPTINASSESRSVNTKHNSPLFPGYLFIHLSA 101 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEG 121 + + +T+G+ V+FG V + +I + ++ D + Sbjct: 102 SD-NWAPVRSTKGILTIVKFGGRAHAVRNEIIQDIKTRAESLNYSHSSHSEKDSAPLDN- 159 Query: 122 AFEGFQAIFTEPDGEARSMLLLNLINKE 149 I + E R++LL+ + +E Sbjct: 160 RGSEISDILSAKSHEERTLLLVGFLQRE 187 >UniRef50_C2NS75 Transcription antitermination protein nusG n=2 Tax=Bacillus cereus group RepID=C2NS75_BACCE Length = 179 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 37/178 (20%), Positives = 62/178 (34%), Gaps = 16/178 (8%) Query: 1 MQ--SWYLLYCKRGQLQRAQ----EHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNY 54 M+ SWY L + G + L V+ L P T+ + +G V+ L P Y Sbjct: 1 MKILSWYALCVRSGYEDLVESLILRDLNETLVSVLVPKKTVPEKRKGHFKWVTRKLLPGY 60 Query: 55 LFVEFDPEVIHTTTINATRGVSHFVR-----FGASPAIVPSAVIHQLSVYKPKDIVDP-- 107 + + + + +F+ +P I + Sbjct: 61 ILINTSMDAKMYYKLKEIPNCYNFLNKFQDDDDIYFLEIPDQEITPIIQLLNDRGTIECS 120 Query: 108 ATPYPGDKVIITEGAFEGFQAIFTEPDG-EARSMLLLNLIN--KEIKHSVKNTEFRKL 162 + G KVI+ G +G + I D + R+ LLLN + K I V+ +KL Sbjct: 121 EAYFEGSKVIVKSGPLKGREGIIRRIDKRKKRAKLLLNFLGDTKMIDVGVEFLSSQKL 178 >UniRef50_C8PLY0 Transcription antitermination protein, NusG family n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PLY0_9SPIO Length = 186 Score = 101 bits (253), Expect = 7e-21, Method: Composition-based stats. Identities = 27/170 (15%), Positives = 57/170 (33%), Gaps = 10/170 (5%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQA-----VNCLAPMITLEKIVRGKRTAVSEPLFPNYLF 56 +Y + K G+ + + + + P L +G R V P+FP Y+F Sbjct: 1 MDYYAVQVKTGKEPELLKKIRKLNEENHEIQAYFPRRVLYIKKKGIRQKVDAPVFPGYIF 60 Query: 57 VEFDPEVIHTT-TINATRGVSHFVRFGASPAIVPSAV---IHQLSVYKPKDIVDPATPYP 112 +E D + + T HF+ +P + +H + Sbjct: 61 LEIDDLSLPLCWQLRKTPNFYHFLPNNQNPLPLVDNDLSLLHHFLSFGEVTAPSKVYFDA 120 Query: 113 GDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 ++ + +GA +G + + D R+ +LL++ + Sbjct: 121 NSRICVIDGALKGLEGKIIKVDRRKQRAKVLLDMYTDSFPIDLAFDVIEP 170 >UniRef50_C5CGE4 Transcription antitermination protein nusG n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CGE4_KOSOT Length = 354 Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 26/128 (20%), Positives = 46/128 (35%), Gaps = 9/128 (7%) Query: 44 TAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKD 103 L+P Y+F+E + +T V +FV G P + I L + Sbjct: 226 KITRTRLYPGYIFIEMIMTDETWNLVKSTPNVVNFVSNGGQPIELKPKEIKALLRLVGLE 285 Query: 104 IVD--------PATPYPGDKVIITEGAFEGFQAIFTEPDGEAR-SMLLLNLINKEIKHSV 154 + + V I G FE F TE D E + +++++ +E + Sbjct: 286 EYEEKTRPIKVEVDFEVNEMVRINSGPFEDFVGKITEIDPERQEVKVVVSIFGRETPVML 345 Query: 155 KNTEFRKL 162 +E K+ Sbjct: 346 NLSEIEKI 353 >UniRef50_B8I511 NusG antitermination factor n=6 Tax=Clostridium RepID=B8I511_CLOCE Length = 188 Score = 101 bits (251), Expect = 1e-20, Method: Composition-based stats. Identities = 32/171 (18%), Positives = 68/171 (39%), Gaps = 12/171 (7%) Query: 4 WYLLYCKRGQLQRAQEHLERQA----VNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEF 59 WY+L+ K G+ R +++L++ +N P+ + G +PLFP Y+F+E Sbjct: 17 WYVLFVKSGREHRVEQYLKKIVGIDMINPFIPLHEFLFKISGTVKRELKPLFPGYVFIES 76 Query: 60 DPEVIHT-----TTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT--PYP 112 D I + +++ + V + L + ++ Sbjct: 77 DMAGQEFIRKLYNKIYLLSDIVRILKYSDTEIAVRDSEKQMLLDLCNNEHCIESSRGVIK 136 Query: 113 GDKVIITEGAFEGFQAIFTEPDGEAR-SMLLLNLINKEIKHSVKNTEFRKL 162 GD++ IT G G ++I + + R +++ + + + SV K+ Sbjct: 137 GDRIYITNGPLRGRESIIKKVNRHKRQALVEMEFMGDKRLVSVALEIVEKV 187 >UniRef50_B8INV2 NusG antitermination factor n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8INV2_METNO Length = 178 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 25/171 (14%), Positives = 56/171 (32%), Gaps = 14/171 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 ++W+++ + +R E L R+ + P+ + + RG++ E +F +Y+F D Sbjct: 6 KTWFVVQTGPARERRVVELLAREGADTWLPLFRVTTVRRGRKVDDFEKVFASYVFAGLDE 65 Query: 62 EVIHTT---TINATRGVSHFVRFGASPAIVPSAVIH----------QLSVYKPKDIVDPA 108 E + + V + P P+ + + + + + A Sbjct: 66 ETMRRRGTSVLFDCDHVLDVLGV-DRPLPFPADALQVLADRLAGHNRDETEEGRRRTEAA 124 Query: 109 TPYPGDKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 G+ I G F F A E + + + + Sbjct: 125 KIQVGEMRRIINGPFMSFFAEVEEVLSNGIIKAGVRIFGRITPVEFTPDQL 175 >UniRef50_A6UA20 NusG antitermination factor n=1 Tax=Sinorhizobium medicae WSM419 RepID=A6UA20_SINMW Length = 219 Score = 100 bits (250), Expect = 1e-20, Method: Composition-based stats. Identities = 31/168 (18%), Positives = 61/168 (36%), Gaps = 9/168 (5%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTA--VSEPLFPNYLFVEFDP 61 W+ L G+ + ++ L+ AV L PM + R R P+ Y+ V+ Sbjct: 52 WFALRVWTGREKTVEKSLDIMAVRSLVPMRKGPDLRRRGRVIEGQMMPVIHGYVLVQMMA 111 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATP-----YPGDKV 116 + + V + P + +++ + D P G+ V Sbjct: 112 LSEYLAGLLGVEHVIDVLGGCERPMRLSDKEVNRFNGLARNGNFDWERPVDLVVRAGEPV 171 Query: 117 IITEGAFEGFQAIFTEPDGEAR--SMLLLNLINKEIKHSVKNTEFRKL 162 +IT G F +A P + R ++ ++ + E+ +V +KL Sbjct: 172 LITAGPFCDRRATVITPSKKGRGDVVVSIDFMGGEVPVTVPLALLKKL 219 >UniRef50_D0I9V3 Putative uncharacterized protein n=1 Tax=Grimontia hollisae CIP 101886 RepID=D0I9V3_VIBHO Length = 171 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 31/161 (19%), Positives = 59/161 (36%), Gaps = 5/161 (3%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 WY +Y + + ++ L + P L + + +R EPLF +LFV P Sbjct: 4 YRWYAVYTHFNEEKVLRDELLAKGYEVYLPERKLWETLGNRRRVTYEPLFKCHLFVRTTP 63 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVY---KPKDIVDPATPYPGDKVII 118 E + + +G SH VR+G A + + I ++ + G V + Sbjct: 64 EGLK--NVKQAQGFSHLVRYGKYVATISESHIIKIKTILYYYEDATSVSNSNVEGLAVAV 121 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEF 159 G +G + +GE + + + + +V Sbjct: 122 VNGPLKGMIGVLPAGEGERPIAMEIGQLGYSVNVTVPMDTI 162 >UniRef50_P29397 Transcription antitermination protein nusG n=12 Tax=Bacteria RepID=NUSG_THEMA Length = 353 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 27/129 (20%), Positives = 43/129 (33%), Gaps = 9/129 (6%) Query: 43 RTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK 102 LFP Y+FVE + + V FV G P V + + Sbjct: 224 YKTKRRKLFPGYVFVEMIMNDEAYNFVRSVPYVMGFVSSGGQPVPVKDREMRPILRLAGL 283 Query: 103 DIVDPAT--------PYPGDKVIITEGAFEGFQAIFTEPDGEAR-SMLLLNLINKEIKHS 153 + + GD V I G FE F + E D E + + + + +E Sbjct: 284 EEYEEKKKPVKVELGFKVGDMVKIISGPFEDFAGVIKEIDPERQELKVNVTIFGRETPVV 343 Query: 154 VKNTEFRKL 162 + +E K+ Sbjct: 344 LHVSEVEKI 352 >UniRef50_C0ZGR2 Transcription antitermination protein nusG n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZGR2_BREBN Length = 177 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 29/175 (16%), Positives = 58/175 (33%), Gaps = 15/175 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLE----RQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFV 57 WY ++ + G+ + Q++L Q++ + P + + G V + FP Y+ + Sbjct: 1 MKWYAIFVESGKEEVVQKYLRLYFNEQSLKSIVPKRLVPEKKSGIVYNVLKNFFPGYVLI 60 Query: 58 EFDPEVIHTTTINATRGVSHFVRFGA--------SPAIVPSAVIHQLSVYKPKDIVDPAT 109 + + I V G+ + + I + V + Sbjct: 61 QTEMTNEMFHKIKKIPRSLRLVNNGSYYSQDEGAYYSSIEEKEITPILQLMGNGEVVDYS 120 Query: 110 --PYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 KVI+ G +G + I + D R+ + L + E V K Sbjct: 121 KVYLENSKVIVESGPLKGLEGIIKKVDKHKNRAKIFLTFMGVEKTIDVGIEILSK 175 >UniRef50_B7AH17 Putative uncharacterized protein n=1 Tax=Bacteroides eggerthii DSM 20697 RepID=B7AH17_9BACE Length = 171 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 32/166 (19%), Positives = 63/166 (37%), Gaps = 9/166 (5%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + WY +Y + R + L Q + P+ + + GKR V++P+ LFV Sbjct: 8 RHWYAVYVRHNTEFRVESWLREQGIEIYLPVQDVYREHAGKRIKVTKPVISGMLFVCLSR 67 Query: 62 EVIHTTTINATRGVSHFV--RFGASPAIVPSAVIHQLSVYKP----KDIVDPATPYPGDK 115 + T + V HF R +P I+P + ++ PG Sbjct: 68 PEL--TIVEHAPNVHHFFSKRGTNAPLIIPDQQMADFRFMVDLSDTSILMVNEPIAPGTM 125 Query: 116 VIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 V + +G+ +G + + + + + L + + SV + R+ Sbjct: 126 VTVAKGSMQGIRGEMVKYESKYYIAVRLQELGCAL-VSVPVSYVRR 170 >UniRef50_C6LL07 Putative transcription antiterminator n=3 Tax=Clostridiales RepID=C6LL07_9FIRM Length = 183 Score = 100 bits (249), Expect = 2e-20, Method: Composition-based stats. Identities = 31/166 (18%), Positives = 59/166 (35%), Gaps = 8/166 (4%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVN-----CLAPMITLEKIVRGKRTAVSEPLFPNYLFVE 58 WY++ + G +R R+ C P ++K ++G+ + LFP Y+FV Sbjct: 17 WYVMQVQTGMEERICAQCRRKISETVLEQCFIPRYEVKKHIQGEWKTQKQILFPGYVFVV 76 Query: 59 FDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT--PYPGDKV 116 + G++ + G + L + ++ V + G +V Sbjct: 77 TSDIQNLHEELKKVIGLTKLIGTGREIVPISENEKEFLLGFGGEEQVVQMSEGIITGSQV 136 Query: 117 IITEGAFEGFQAIFTEPDGEAR-SMLLLNLINKEIKHSVKNTEFRK 161 +I G +G + + D R + L L L+ V K Sbjct: 137 VIHSGPLKGKEGYIRKIDRHKRKAWLELPLLGGMQNVQVGLEIVCK 182 >UniRef50_A5IXI2 Transcription antitermination protein nusG n=1 Tax=Mycoplasma agalactiae PG2 RepID=A5IXI2_MYCAP Length = 199 Score = 99 bits (248), Expect = 3e-20, Method: Composition-based stats. Identities = 29/190 (15%), Positives = 56/190 (29%), Gaps = 33/190 (17%) Query: 4 WYLLYCKRGQLQRAQEHLERQAV-----NCL-----------------APMITLEKIVRG 41 WY++ G+ + E L+ + V C EK G Sbjct: 6 WYMISTVSGKEDKVVESLKNRIVSEQVEECFNQNATEEGAFKIFRKPVLTTKEAEKKALG 65 Query: 42 K-RTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRF---GASPAIVPSAVIHQLS 97 + ++ Y+F+ D + T+ V+ + G P V I Sbjct: 66 EPYKVKMSNMYGGYIFINMDMTDKAWFVVRNTQYVTGLIGSAGKGTKPTPVTKKEIDLAF 125 Query: 98 VYKPKDIVDPA------TPYPGDKVIITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEI 150 + + I D G+ V I +G F+G E + + + + K++ Sbjct: 126 EKEKQLIEDFNAGKIIDKFTVGEIVEIIDGPFKGTIGKVLEANESIHKVTVEVEHFGKKV 185 Query: 151 KHSVKNTEFR 160 + Sbjct: 186 PTDFDYSVVE 195 >UniRef50_Q7UWN7 Probable NusG-like protein-putative transcription activator n=1 Tax=Rhodopirellula baltica RepID=Q7UWN7_RHOBA Length = 184 Score = 99.5 bits (247), Expect = 3e-20, Method: Composition-based stats. Identities = 30/164 (18%), Positives = 61/164 (37%), Gaps = 11/164 (6%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMIT-LEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 W+LLY K Q + L V APM+ + G+ PLF Y+F+ D + Sbjct: 26 WWLLYTKSRQEKAVIRKLRDAGVPHYAPMVKQRFRSPAGRMRESFVPLFSTYVFLRGDDQ 85 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVY----KPKDIVDPATPYPGDKVII 118 + + V + VP + + + + PG+ V + Sbjct: 86 ARYEAI------CTGSVLKASEIVQVPDLIEDLQQIRSLIVMGVPLTIESQLQPGEHVRV 139 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 G F G++ + E R ++ + + + + +++ + K+ Sbjct: 140 KNGTFAGYEGTVIRRENETRLLVFVRFMEQGVSVKLEDCQLEKI 183 >UniRef50_B0P702 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0P702_9FIRM Length = 169 Score = 99.2 bits (246), Expect = 5e-20, Method: Composition-based stats. Identities = 31/160 (19%), Positives = 52/160 (32%), Gaps = 5/160 (3%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD 60 M WY+L GQ ++ L + P G T+ LFP Y+F+ + Sbjct: 1 MAKWYVLQVLAGQETAVRDALHIMGIRAAVPQEERLLRKNGGWTSRIYTLFPGYVFLSLE 60 Query: 61 PEVIHTTTINATRGVSHFVRFGA-SPAIVPSAVIHQLSVYKPKDI---VDPATPYPGDKV 116 + + A V F+ F SP+ + L + P V Sbjct: 61 YSAENYYRVKAVPHVLRFLGFSGLSPSCLTHLEAEWLRLLSNGGEPLKPSRVEELPDGSV 120 Query: 117 IITEGAFEGFQAIFTEPDGE-ARSMLLLNLINKEIKHSVK 155 I EG + F D R+ + + L + ++ Sbjct: 121 RIMEGVLQNFPVRSIHFDRRARRARVGITLCGEPKILTLS 160 >UniRef50_B0K4N5 Transcription antitermination protein nusG n=9 Tax=Thermoanaerobacter RepID=B0K4N5_THEPX Length = 179 Score = 98.8 bits (245), Expect = 5e-20, Method: Composition-based stats. Identities = 30/166 (18%), Positives = 68/166 (40%), Gaps = 6/166 (3%) Query: 1 MQSWYLLYCKRGQLQRAQEHLE---RQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFV 57 M+ WY+++ + G + ++ +E ++ V L P + + V+G+ + LFP Y+FV Sbjct: 1 MKKWYVIFTRSGYENKVRDIIENCFKEEVKLLIPKRKIIERVKGQPVEKIKLLFPGYVFV 60 Query: 58 EFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT--PYPGDK 115 + I+ F++ G PA V + + + + G++ Sbjct: 61 NAEMSDDLYYKISEVLKRGIFLKEGKRPAFVKEEEMKIILSLTKNSDLIDLSKGIMEGER 120 Query: 116 VIITEGAFEGFQA-IFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 V I EG +G++ I + R+ ++ ++ + + Sbjct: 121 VKIIEGPLKGYEGLIKKIDKRKKRAKVIFSIAGELKSVDLAIEVME 166 >UniRef50_B8IEU5 Putative uncharacterized protein n=1 Tax=Methylobacterium nodulans ORS 2060 RepID=B8IEU5_METNO Length = 171 Score = 98.4 bits (244), Expect = 6e-20, Method: Composition-based stats. Identities = 28/166 (16%), Positives = 58/166 (34%), Gaps = 5/166 (3%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 ++W+L+ + RA + L+ Q + + P G+ +F +FV + Sbjct: 5 RTWHLVRTAPSMMGRALDTLKEQGIPTVVPRTVAVGHREGRPYLRRAQMFHRTVFVGVEG 64 Query: 62 EVIHTTTINATRGVSHFVRFGAS----PAIVPSAVIHQLSVYKP-KDIVDPATPYPGDKV 116 + RGV+ +R P + + + PA GD+V Sbjct: 65 AADLDGKVPTARGVTRVLRNPTRADMAPMTISGPDMAAFVAAIGITEKRKPAGIAAGDRV 124 Query: 117 IITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 ++ G F F A+ E R + + + + + + R + Sbjct: 125 VVQAGPFASFPAMVEEVLPNERLKVAVQIFGRATPFECGHADVRPI 170 >UniRef50_A7Z6E4 Transcription antitermination protein nusG n=1 Tax=Bacillus amyloliquefaciens FZB42 RepID=A7Z6E4_BACA2 Length = 176 Score = 97.2 bits (241), Expect = 1e-19, Method: Composition-based stats. Identities = 28/175 (16%), Positives = 56/175 (32%), Gaps = 15/175 (8%) Query: 2 QSWYLLYCKRGQLQRAQEHLE----RQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFV 57 WY L+ + G+ + Q+ L QA+ + P + + G + + +FP Y+ Sbjct: 1 MKWYALFVESGKEETVQKFLRLQFDEQALYSIIPKKKVTERKAGIKYEALKKMFPGYVLF 60 Query: 58 EFDPEVIHTTTINATRGVSHFVRFGASP--------AIVPSAVIHQLSVYKPKDIVDPAT 109 + I V GA + I + + + Sbjct: 61 KTKMTERTFHKIKELPISCRIVNNGAYYSKERKTYFTTIKDEEILPIIRLIGEGDTVDYS 120 Query: 110 --PYPGDKVIITEGAFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFRK 161 KV + G +G + I + D R+ + L+ + + +V K Sbjct: 121 KVYIENSKVTVASGPLKGMEGIIKKIDKRKRRAKICLSFMGLDKMVNVGIEVLSK 175 >UniRef50_UPI000174528A NusG antitermination factor n=1 Tax=Verrucomicrobium spinosum DSM 4136 RepID=UPI000174528A Length = 158 Score = 96.8 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 34/139 (24%), Positives = 51/139 (36%), Gaps = 4/139 (2%) Query: 24 QAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGA 83 + V P I ++ + E LFP+Y F F H + T V V FG Sbjct: 5 EHVETFCPRIRFQRSTPRGKVWFVEALFPSYFFARFVYSEAHRA-VKHTHNVIRIVGFGG 63 Query: 84 SPAIVPSAVIHQLSVYKPKDIVDPATP--YPGDKVIITEGAFEGFQAIFTEP-DGEARSM 140 PA +P I L + GD V + EG G + + GE R Sbjct: 64 DPAPIPDLTIENLREEMQGAELREVKYGVEVGDTVEVAEGPMRGLKGVVESLASGEQRVK 123 Query: 141 LLLNLINKEIKHSVKNTEF 159 LLL + ++ V+ ++ Sbjct: 124 LLLEFLGRQSLVEVQASKL 142 >UniRef50_C4FB35 Putative uncharacterized protein n=1 Tax=Collinsella intestinalis DSM 13280 RepID=C4FB35_9ACTN Length = 170 Score = 96.8 bits (240), Expect = 2e-19, Method: Composition-based stats. Identities = 25/157 (15%), Positives = 50/157 (31%), Gaps = 9/157 (5%) Query: 14 LQRAQEHLER----QAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVIHTTTI 69 RA + + +C P + G+ + E LFP Y+FV + Sbjct: 13 EDRAAALIAKIAQGAVDDCFVPKREVTHRKSGQWHRILEKLFPGYVFVRTSAPKQIREAL 72 Query: 70 NATRGVSHFVRF-GASPAIVPSAVIHQLSVYKPKDIVDPAT---PYPGDKVIITEGAFEG 125 + + G + + + + ++ D GD V++ G +G Sbjct: 73 GRVPAFTRMLTSAGDTCLPLTADEVAWINAITNVDTHVMEMSEGVIEGDCVMVIRGPLKG 132 Query: 126 FQAIFTEPDGEARSM-LLLNLINKEIKHSVKNTEFRK 161 +A T D R + +++ + V K Sbjct: 133 HEARITRIDRHKRLAWVDMDMFGRHKAIRVGLEIVSK 169 >UniRef50_B3PLY8 Transcription antitermination protein n=4 Tax=Mycoplasma RepID=B3PLY8_MYCA5 Length = 197 Score = 96.5 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 21/184 (11%), Positives = 55/184 (29%), Gaps = 26/184 (14%) Query: 3 SWYLLYCKRGQLQRAQEHLERQ-----------AVNCL-AP----MITLEKIVRGKRTAV 46 WY++ G+ E L+ + + P +K + Sbjct: 11 KWYMISTVSGKEDNVVESLKNKISTQDMDECFKEIKIFKMPHLSNKELEKKSKGEEYKVK 70 Query: 47 SEPLFPNYLFVEFDPEVIHTTTINATRGVSHFVRF---GASPAIVPSAVIHQLSVYKPKD 103 ++ Y+F+ + T+ V+ + GA P + + ++ + Sbjct: 71 YLNIYKGYIFINMIMTDEAWYLVRNTQYVTGLIGSSGKGAKPTPISTRNFEKMVQKEIAL 130 Query: 104 IVD------PATPYPGDKVIITEGAFEGFQAIFTEPDG-EARSMLLLNLINKEIKHSVKN 156 G V IT G F+G + + ++ + + +++ + + Sbjct: 131 AEKFAAGDIETVFKEGVIVKITSGIFKGEMGEIVKNNDITQKAFVNIEQYGRKVPTEIDH 190 Query: 157 TEFR 160 + Sbjct: 191 ADLE 194 >UniRef50_B9JXL7 Transcription antitermination protein nusG n=3 Tax=Agrobacterium vitis S4 RepID=B9JXL7_AGRVS Length = 220 Score = 96.5 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 30/168 (17%), Positives = 55/168 (32%), Gaps = 11/168 (6%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRT--AVSEPLFPNYLFVEFD 60 W + CK G Q ++ L Q ++C P R ++ V PLF YLFV Sbjct: 51 RWVVARCKSGLEQVIRDALAEQGIDCWCPCERRRLPPRRRKPALVVERPLFRGYLFVRVI 110 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIH--------QLSVYKPKDIVDPATPYP 112 P+ + + + P ++P ++ + V P Sbjct: 111 PDNEAYAGLLLASRLQSLMGQDGKPYLMPETLMRQLQLSAKAAERRHMDAGDVPPMPDML 170 Query: 113 GDKVIITEGAFEGFQAIFTEP-DGEARSMLLLNLINKEIKHSVKNTEF 159 G +V I G F F + + ++ + + + +V Sbjct: 171 GKQVTIRSGPFADFVVTVRKVLSKRGQVVVDVPMFGGMSEVTVGVEAI 218 >UniRef50_B5CXQ3 Putative uncharacterized protein n=1 Tax=Bacteroides plebeius DSM 17135 RepID=B5CXQ3_9BACE Length = 171 Score = 96.5 bits (239), Expect = 3e-19, Method: Composition-based stats. Identities = 26/165 (15%), Positives = 60/165 (36%), Gaps = 8/165 (4%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY Y + ++ E LE V P+ + + ++ + + + P +F+ D E Sbjct: 9 WYAFYVRMHHEKKTAEKLEMLKVVHFLPIQEVIRQWSDRKKKIKQVVIPMLIFICTD-EK 67 Query: 64 IHTTTINATRGVSHFV--RFGASPAIVPSAVIHQLSVY----KPKDIVDPATPYPGDKVI 117 + ++ + PAI+ + + + PG+KV Sbjct: 68 GRIELLQNLPSLTGCLIDPATRRPAIIRNEEMEKFKFMLDFSDETIRFQSEPLAPGEKVE 127 Query: 118 ITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 + +G+ +G Q E + ++ M+ + + + +KL Sbjct: 128 VIKGSLKGLQGELVELEDHSQVMIRIEHLGYAT-VEIPVGYVKKL 171 >UniRef50_B6GCE7 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GCE7_9ACTN Length = 217 Score = 96.1 bits (238), Expect = 3e-19, Method: Composition-based stats. Identities = 24/167 (14%), Positives = 54/167 (32%), Gaps = 9/167 (5%) Query: 4 WYLLYCKRGQLQ---RAQEHLERQAV--NCLAPMITLEKIVRGKRTAVSEPLFPNYLFVE 58 WY++ G+ + E + + V C +P+ + + G+ V + L P Y+ V Sbjct: 37 WYVVNVPTGRESALCKVIERIAPEGVVRECFSPLYSTQIKRGGEWLDVEKTLLPGYVIVA 96 Query: 59 FDPEVIHTTTINATRGVSHFVRFGASPAIVPSAV---IHQLSVYKPKDIVDPATPYPGDK 115 + + + + G S + I + + + GD Sbjct: 97 TEQIGRVKRLLREVPEYTRVLNMGESFVPLADGERAWIDAFTRKGERCVPMSMGVMEGDH 156 Query: 116 VIITEGAFEGFQAIFTEPDGEARSM-LLLNLINKEIKHSVKNTEFRK 161 V++ G G +A + + L + + + V + Sbjct: 157 VVVVSGPLLGREACIKSVNRHRSIAYVELEICGRRVTTKVGLGIVSR 203 >UniRef50_UPI00016C34F5 transcription antitermination protein nusG n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C34F5 Length = 177 Score = 95.7 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 26/161 (16%), Positives = 51/161 (31%), Gaps = 2/161 (1%) Query: 3 SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPE 62 W L + E L V P++T + K P+FP Y+F Sbjct: 12 RWAALRTAARWEKAVTEQLAAAGVPVFLPLLTRVSRTKSKTQTAQLPVFPGYVFCGEREY 71 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIV-DPATPYPGDKVIITEG 121 T + R + + P + + + + ++ + GD V I G Sbjct: 72 RDSTRVPPSCRKLIAQLLRAPDPDQLKDELRSVADLLANRQLLQERVYGVIGDTVRIVGG 131 Query: 122 AFEGFQAIFTEPD-GEARSMLLLNLINKEIKHSVKNTEFRK 161 G G R ++ ++ + ++ +V+ K Sbjct: 132 PLAGSLGTILRLKPGTRRVLIEVSFLGARMEATVEERLLEK 172 >UniRef50_Q9EUG2 Actx protein n=1 Tax=Escherichia coli RepID=Q9EUG2_ECOLX Length = 163 Score = 95.3 bits (236), Expect = 6e-19, Method: Composition-based stats. Identities = 38/148 (25%), Positives = 57/148 (38%), Gaps = 17/148 (11%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGK---RTAVSEPLFPNYLFVE 58 WY+L + +HLER + PM T + K PLFP YLF++ Sbjct: 1 MKWYVLQFTTTRFAAVFKHLERLNFSYYCPMATEKYRRPDKQLSYRERLTPLFPGYLFIQ 60 Query: 59 FDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVII 118 D + +HTTTI F+ FG P VP + + G++ ++ Sbjct: 61 ADFDEVHTTTITGLPHTQRFIAFGGEPLAVPDDEVCNV--------------QKGERNLL 106 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLI 146 + I + RSM +LN I Sbjct: 107 NFDEYPRLVEIMMMSEPRMRSMAMLNYI 134 >UniRef50_Q1VSS9 Transcription activator or transcription antitermination factor n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=Q1VSS9_9FLAO Length = 159 Score = 94.5 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 28/153 (18%), Positives = 57/153 (37%), Gaps = 6/153 (3%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 + W++LY K ++ E L R + P T ++ ++ V P+ P+ L V+ Sbjct: 7 KKWFVLYTKPRGEKKLSEQLNRSGIEAYCPTRTEVRVWSDRKKKVEMPVLPSMLLVKI-- 64 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT---PYPGDKVII 118 E + ++ + P++V + L + PG K+ + Sbjct: 65 ENKQRAKALESPLAIRYLFWNGKPSVVTQVEVDTLRSILGDSKFESHELDQLRPGQKLDM 124 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIK 151 TE FE + + + ++L I +K Sbjct: 125 TELGFENIEGTVQYVNKKE-CWVVLQGIGYVVK 156 >UniRef50_B0UIZ3 NusG antitermination factor n=2 Tax=Methylobacterium RepID=B0UIZ3_METS4 Length = 225 Score = 94.1 bits (233), Expect = 1e-18, Method: Composition-based stats. Identities = 25/165 (15%), Positives = 49/165 (29%), Gaps = 10/165 (6%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKI-VRGKRTAVSEPLFPNYLFVEFDPE 62 W + + R L + +E++ G R V+ PL +F+ + Sbjct: 52 WLVARTRPRWAPRVVRDLAALGLCAFEAREEVERVGPDGARRRVAVPLLHRLVFLGL-RD 110 Query: 63 VIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLS-------VYKPKDIVDPATPYPGDK 115 A GV + +P+ ++ + + V+ GD Sbjct: 111 DADLARAEAHPGVLRVLFREGRAVTIPAPILQAFADALAGRAGEGEDEAVEAVLLALGDA 170 Query: 116 VIITEGAFEGFQAIFTEPDG-EARSMLLLNLINKEIKHSVKNTEF 159 V +T G + D R + L L + + + E Sbjct: 171 VRVTRGPLAALRGTIEAVDPARRRYRVALGLFGRATRVDLAAEEV 215 >UniRef50_Q5LG31 Putative transcriptional regulator n=6 Tax=Bacteroides RepID=Q5LG31_BACFN Length = 174 Score = 93.8 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 24/163 (14%), Positives = 47/163 (28%), Gaps = 11/163 (6%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WYL + QR ++ L+++ V P+ + +G+ P + + Sbjct: 17 WYLAFTASRAEQRVKQELDQRKVRNYLPLRKITYQWQGRSREALCPQIARCVLIWTSLSD 76 Query: 64 IHTTTINATRGVSHFVRFGASP-AIVPSAVIHQLSVYKPKDIV----DPATPYPGDKVII 118 I G+S + VP + + + P V + Sbjct: 77 -----IRQLSGISGLIIPQNIWDYRVPEWQVESYQLLFSQMDTAVEWIPDCLESATMVRV 131 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRK 161 T G G D R + + + + +V K Sbjct: 132 TGGPLTGLVGELDTSDTGFRIRIRFHSMG-CFRVAVPEEWIEK 173 >UniRef50_B0MWZ3 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MWZ3_9BACT Length = 181 Score = 93.8 bits (232), Expect = 2e-18, Method: Composition-based stats. Identities = 29/169 (17%), Positives = 59/169 (34%), Gaps = 10/169 (5%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFD--- 60 WY L ++ ++ L ++ V P++ + + K+ +P + +F+ Sbjct: 10 WYALKVFYNRVFELEKQLSQEGVRSYIPLLHEDTVAGDKKIRKRKPAVSSLMFIRQSEHY 69 Query: 61 PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPA-------TPYPG 113 + + +++F R PA++P + D D G Sbjct: 70 LLELQDRMKASCPFMAYFDRETKKPAVIPDREMELFMQITSADTSDLEYFSDEAIDYRSG 129 Query: 114 DKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 DKV +T G F+G + G R ++ L I + K+ Sbjct: 130 DKVRVTGGPFKGAEGYIKRIRGNRRLVVALEGIIAVATTYIPGRFLEKM 178 >UniRef50_A8S2H9 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S2H9_9CLOT Length = 160 Score = 93.0 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 24/155 (15%), Positives = 57/155 (36%), Gaps = 3/155 (1%) Query: 2 QSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDP 61 WY++ + G+ + L LAP+ G LFP Y+F++ D Sbjct: 1 MLWYVVQVRTGEEKDIAAKLTDMGFQTLAPVENRPVRSGGAWGTKEYVLFPGYVFLQMDY 60 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEG 121 + + A G+ + + + + I L+ + + + + I G Sbjct: 61 NAGNYYRLKAVPGIVKLLS--GTLTYLEAEWIRLLAGQGGRPLEPTLMRETEEGLEIETG 118 Query: 122 AFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVK 155 + F++ D + R+ + L++ ++ + + Sbjct: 119 ILQNFKSRIIRMDKRSLRATIELSICGEKKEVQLG 153 >UniRef50_D1PRH1 Putative transcription termination factor NusG n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PRH1_9FIRM Length = 185 Score = 93.0 bits (230), Expect = 3e-18, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 55/159 (34%), Gaps = 6/159 (3%) Query: 5 YLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVI 64 Y+L G+ + L + + P + G+ + L+P Y+FV+ + V Sbjct: 4 YVLQVITGREKDICGRLRKAGIPAYCPRAVRQIRRGGRWQEQTYTLYPAYIFVQCERVVD 63 Query: 65 HTTTINATRGVSHFVRFG-ASPAIVPSAVIHQLSVYKPKDIVDPAT--PYPGDKVIITEG 121 + GV +++ +P + + + + + T G Sbjct: 64 VYYAVRREDGVLYWLGATRGTPEPLSADEEANILWLAGDGPQPVSKAVCRADGSLDFTSG 123 Query: 122 AFE---GFQAIFTEPDGEARSMLLLNLINKEIKHSVKNT 157 + +A+ + E R+ +L L KE K ++ Sbjct: 124 PLKRLAELEALRSVFRRERRATAVLPLHGKEHKINLSFE 162 >UniRef50_A7V7E7 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=A7V7E7_BACUN Length = 243 Score = 92.6 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 56/151 (37%), Gaps = 16/151 (10%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY L G+ ++A +++ + + P K+++GKR V+E PN F E Sbjct: 68 WYALRTTYGREKKAYDYMTAKGITAFYPTTDTVKLIKGKRKIVTESRLPNIFFAYGTEEQ 127 Query: 64 IHTTTINAT-----RGVSHFVRFGAS----PAIVPSAVIHQLSVYKPKDI-------VDP 107 + T + R V G P IVP + L + D ++ Sbjct: 128 LKTFVYDNVNLPFLRFYYRHVHVGRRIEKIPMIVPDYQMESLKIICAADADNTIVSLIEV 187 Query: 108 ATPYPGDKVIITEGAFEGFQAIFTEPDGEAR 138 G V + +GAF+G G+ R Sbjct: 188 PKFEKGQLVRVIDGAFKGVIGRVARWQGQQR 218 >UniRef50_A6X1C2 NusG antitermination factor n=1 Tax=Ochrobactrum anthropi ATCC 49188 RepID=A6X1C2_OCHA4 Length = 217 Score = 91.1 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 54/167 (32%), Gaps = 8/167 (4%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTA--VSEPLFPNYLFVEFDP 61 W +L G+ +E L ++ + L PM KI R R +P+ Y+ Sbjct: 51 WLVLQVMSGRELSVREALGKENIEVLVPMKMGPKIRRQGREIPAKKQPVMNGYVLARCMI 110 Query: 62 EVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPG----DKVI 117 + + V + +P +V + + D + Sbjct: 111 SNECLAGLLSFENVVSILGGYETPFLVSAEKVFVFRAKAEDGQYDYEHFHRKFIGVKWAR 170 Query: 118 ITEGAFEGFQAIFTE--PDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 + +G F G +A G ++ ++++ + + +V L Sbjct: 171 VADGPFAGCRAELVSGGTKGNGLVVIEVSIMGRPVAMTVPIAILEPL 217 >UniRef50_B0SHW0 Transcription antiterminator n=2 Tax=Leptospira biflexa serovar Patoc RepID=B0SHW0_LEPBA Length = 179 Score = 91.1 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 27/145 (18%), Positives = 49/145 (33%), Gaps = 6/145 (4%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 WY++Y K ++ E L + + P+ K + + P+ P+Y+FV Sbjct: 13 WYIVYTKPRAEKKLSELLRKYHIENYLPIRKERKKWTDRFKWIHVPVLPSYIFVRIVFWR 72 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPK-----DIVDPATPYPGDKVII 118 + G FV PAIV + L + + G V I Sbjct: 73 DK-NKVLQLPGSVQFVFHKGQPAIVEQNDLDVLEKGLQEYAESLKMNPELLLQKGKLVRI 131 Query: 119 TEGAFEGFQAIFTEPDGEARSMLLL 143 +G+F G + + + + Sbjct: 132 IDGSFVGKTMEIIKVKNKTLVVCRI 156 >UniRef50_B6GA74 Putative uncharacterized protein n=1 Tax=Collinsella stercoris DSM 13279 RepID=B6GA74_9ACTN Length = 192 Score = 91.1 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 27/168 (16%), Positives = 55/168 (32%), Gaps = 9/168 (5%) Query: 3 SWYLLYCKRGQLQRAQEHL-----ERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFV 57 WY++ +G+ + + +P E VRG+ V + L P YL Sbjct: 4 QWYVIQVMKGREDSMASLIGRVVPKSLLQEVFSPKYETEIKVRGRWVPVQKTLLPGYLIA 63 Query: 58 EFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIH---QLSVYKPKDIVDPATPYPGD 114 + + + + G + A + + + + GD Sbjct: 64 VTNDPEGLEAVLRDLPEFARLLAQGNEFVPLAPAEVEVIGSFTSPGKRVVPMSIGVKDGD 123 Query: 115 KVIITEGAFEGFQAIFTEPDGEARSMLL-LNLINKEIKHSVKNTEFRK 161 +V++T G G +A+ E +L +N+ + + V K Sbjct: 124 RVVVTGGPLVGHEAMVKEIWRRKSIAILEVNMCGRVVTTRVGLGVLSK 171 >UniRef50_Q6MDM6 Transcription antitermination protein nusG n=1 Tax=Candidatus Protochlamydia amoebophila UWE25 RepID=Q6MDM6_PARUW Length = 124 Score = 90.7 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 21/118 (17%), Positives = 47/118 (39%), Gaps = 6/118 (5%) Query: 50 LFPNYLFVEFDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVD--- 106 ++P YL ++ + + T GV F+ G P + + ++ Sbjct: 1 MWPGYLLIKMNLSDESWQYVKNTNGVIDFLG-GDKPTPLTDFEVGEILKDLEDKKRKITQ 59 Query: 107 PATPYPGDKVIITEGAFEGFQAIFTEP-DGEARSMLLLNLINKEIKH-SVKNTEFRKL 162 GD+V IT+G F F TE + R +L+++ ++ + ++ + ++ Sbjct: 60 KHKFEVGDRVKITDGVFVNFIGTVTEVFHDKGRLSVLVSIFGRDTRVDDLEFVQVEEI 117 >UniRef50_A6TKC4 NusG antitermination factor n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TKC4_ALKMQ Length = 162 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 23/160 (14%), Positives = 62/160 (38%), Gaps = 7/160 (4%) Query: 7 LYCKRGQLQRAQEHLERQ--AVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEVI 64 ++ K + +A++ +E++ + + P + + +G+ V + LF YLF+ + +V Sbjct: 1 MHVKSNEEMKAKKLVEKEIEDIKVIVPQRIIPEKRQGETRHVKKILFTGYLFLNVELDVD 60 Query: 65 HTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDI---VDPATPYPGDKVIITEG 121 + + F+ P +P + ++ + + G+KV + G Sbjct: 61 TYYKLKRIPSIHRFLGL-EKPEAIPLEEMQRVLRLCNQGELIGLSKVIVKEGNKVQVVSG 119 Query: 122 AFEGFQAIFTEPDGEA-RSMLLLNLINKEIKHSVKNTEFR 160 G + + D R+ + L+++ + + Sbjct: 120 PLLGMEGHIIKVDKRKGRAKVCLSVLGDAKTVDLGIEIIK 159 >UniRef50_A6L7Z6 Putative transcriptional regulator UpxY-like protein n=12 Tax=Bacteroidales RepID=A6L7Z6_PARD8 Length = 179 Score = 89.9 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 25/169 (14%), Positives = 58/169 (34%), Gaps = 10/169 (5%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 W+ L ++ +E L++ ++C P + G R + +P+ + LF Sbjct: 11 WFALKVFYNKVFEIEESLKKDDIDCYFPCEDAVVMRNGVRKIIRKPIISSILFFHSTTLR 70 Query: 64 IHTTTINATRGVSHFVRFGA---SPAIVPSAVIHQLSVYKPKDIV-------DPATPYPG 113 T V + R P I+P ++ + D G Sbjct: 71 AMEIQRQFTDKVILYTRDKELKKVPLIIPDREMNIFMLVTSSGEKGMEYLGADSTKFCRG 130 Query: 114 DKVIITEGAFEGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFRKL 162 ++V + +G F+G + +R ++ + + + + +K+ Sbjct: 131 ERVRVIDGKFKGAEGYICRIKKNSRLVVAIQGVCAVATSYIPQSFIQKI 179 >UniRef50_C3RM78 NusG antitermination factor n=2 Tax=Bacteria RepID=C3RM78_9MOLU Length = 166 Score = 89.5 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 25/167 (14%), Positives = 58/167 (34%), Gaps = 12/167 (7%) Query: 1 MQ-SWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEF 59 M+ +WY+L+ + + L R+ ++ P I R + + LFP Y+FV Sbjct: 1 MKDNWYVLFALVAKENKLCSVLRRKGLDAFIPKIEYY--RRDIKGNTLKMLFPGYIFVRS 58 Query: 60 DPEVIHTTTI-----NATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPAT--PYP 112 + + + G+ ++ + I + + + + Sbjct: 59 EMKQSDFDNLLYELGEQRDGLIKQLKDDG-VTALRDEEIEMFNKLLNSEGILEMSQAFIE 117 Query: 113 GDKVIITEGAFEGFQAIFTEPDGEARSMLL-LNLINKEIKHSVKNTE 158 +K + G +Q + D R +L + +N+ I ++ Sbjct: 118 DNKAKVIYGPLIHYQDHIVKIDKHNRIAILDIEFLNRHILAGLEIKS 164 >UniRef50_C9Y5P4 Transcriptional activator rfaH n=3 Tax=Enterobacteriaceae RepID=C9Y5P4_CROTZ Length = 156 Score = 89.5 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 37/95 (38%), Positives = 47/95 (49%), Gaps = 2/95 (2%) Query: 1 MQSWYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKR--TAVSEPLFPNYLFVE 58 M WY+LYC +QR E V P R +PLFP+YLF+ Sbjct: 8 MYKWYVLYCNSQDIQRISRRAEDIGVEVFCPRYIKVTPRTDCRAVRQEEKPLFPSYLFLR 67 Query: 59 FDPEVIHTTTINATRGVSHFVRFGASPAIVPSAVI 93 FD V+HT+TI + G FV FGA+P VP +VI Sbjct: 68 FDVNVVHTSTITSIPGAHGFVSFGAAPCTVPESVI 102 >UniRef50_B1ZWG3 NusG antitermination factor n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZWG3_OPITP Length = 180 Score = 88.8 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 19/157 (12%), Positives = 51/157 (32%), Gaps = 2/157 (1%) Query: 4 WYLLYCKRGQLQRAQEHLERQAVNCLAPMITLEKIVRGKRTAVSEPLFPNYLFVEFDPEV 63 W + + K ++ + + P++ + R + ++PLFP Y+F E Sbjct: 23 WLVCHTKPRCEKKFAALMAAERFEHYLPLVDSVRKYRQQTKRFTKPLFPGYVFACVPNEK 82 Query: 64 IHTTTINATRGVSHFVRFGASPAIVPSAVIHQLSVYKPKDIVDPATPYPGDKVIITEGAF 123 ++ + + + V ++ G +V I G Sbjct: 83 RARIFQQDL--LARAIDVDDERRFLRQLDDVRAIVASGYELTVLPLLTRGRRVKIVGGPL 140 Query: 124 EGFQAIFTEPDGEARSMLLLNLINKEIKHSVKNTEFR 160 G + +P +L ++++ + + + + Sbjct: 141 HGLEGFVDDPSNPRGVVLSVDVLQQGLLVKLPAENLQ 177 >UniRef50_A6DPM2 Transcription antitermination protein NusG n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DPM2_9BACT Length = 150 Score = 88.4 bits (218), Expect = 7e-17, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 42/108 (38%), Gaps = 17/108 (15%) Query: 3 SWYLLYCKRGQLQRAQEHLERQ---------AVNCLAPMITLEKIVRGKRTAVSEPLFPN 53 WY L G+ +A++ LER+ + L P + + +GK+ + +P Sbjct: 6 QWYTLQALSGKENKARQDLERRIEQDSMQDSVLEVLLPTEKVTTVRQGKKITQNRKFYPG 65 Query: 54 YLFVEFD-------PEVIHTTTINATRGVSHFVRFGASPAIVPSAVIH 94 YLFV D + + T G+ +F+ G P + I Sbjct: 66 YLFVNVDLIDENGTMKEDVWHFVKNTYGIINFLG-GDKPVPLSDDEIQ 112 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.314 0.156 0.435 Lambda K H 0.267 0.0473 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,027,267,294 Number of Sequences: 3077464 Number of extensions: 41615075 Number of successful extensions: 115136 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 681 Number of HSP's successfully gapped in prelim test: 246 Number of HSP's that attempted gapping in prelim test: 112852 Number of HSP's gapped (non-prelim): 1005 length of query: 162 length of database: 1,040,396,356 effective HSP length: 118 effective length of query: 44 effective length of database: 677,255,604 effective search space: 29799246576 effective search space used: 29799246576 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 88 (38.3 bits)