BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (397 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P76586 Uncharacterized protein yphH n=68 Tax=Enterobact... 822 0.0 UniRef50_Q1Z3R9 Putative uncharacterized protein n=1 Tax=Photoba... 320 7e-86 UniRef50_C4XC10 Putative NagC-like transcriptional regulator n=1... 203 1e-50 UniRef50_UPI000191270F DNA-binding transcriptional regulator n=1... 176 1e-42 UniRef50_D2LQJ9 ROK family protein n=2 Tax=Bacillus cellulosilyt... 142 2e-32 UniRef50_UPI000178870E ROK family protein n=1 Tax=Geobacillus sp... 135 4e-30 UniRef50_D1BAX4 Transcriptional regulator/sugar kinase n=2 Tax=A... 134 8e-30 UniRef50_B8CZW2 ROK family protein n=1 Tax=Halothermothrix oreni... 125 2e-27 UniRef50_D1ANX8 ROK family protein n=1 Tax=Sebaldella termitidis... 124 4e-27 UniRef50_Q65CW6 Putative uncharacterized protein n=1 Tax=Bacillu... 123 1e-26 UniRef50_A3DCE9 ROK domain containing protein n=2 Tax=Clostridiu... 121 4e-26 UniRef50_A7VQ47 Putative uncharacterized protein n=1 Tax=Clostri... 120 6e-26 UniRef50_A5V137 ROK family protein n=2 Tax=Roseiflexus RepID=A5V... 120 1e-25 UniRef50_A9B0W0 ROK family protein n=1 Tax=Herpetosiphon auranti... 119 1e-25 UniRef50_B8CZI2 ROK family protein n=1 Tax=Halothermothrix oreni... 118 4e-25 UniRef50_C5CH51 ROK family protein n=1 Tax=Kosmotoga olearia TBF... 113 1e-23 UniRef50_A8VZR7 Methyltransferase type 11 n=1 Tax=Bacillus selen... 113 1e-23 UniRef50_C6B4Z7 ROK family protein n=3 Tax=Rhizobium RepID=C6B4Z... 113 2e-23 UniRef50_C5ETA5 ROK domain containing protein n=2 Tax=Clostridia... 112 2e-23 UniRef50_A6X1U5 ROK family protein n=3 Tax=Rhizobiales RepID=A6X... 112 2e-23 UniRef50_A5CYL2 Transcriptional regulator/sugar kinase n=4 Tax=C... 112 3e-23 UniRef50_Q5WCD4 Transcriptional repressor of the xylose operon n... 111 5e-23 UniRef50_A1HM15 ROK family protein n=1 Tax=Thermosinus carboxydi... 110 6e-23 UniRef50_Q9KDW7 Transcriptional repressor of the xylose operon n... 109 1e-22 UniRef50_A8L0L3 ROK family protein n=25 Tax=Actinomycetales RepI... 109 1e-22 UniRef50_UPI0001BC4091 ROK family protein n=1 Tax=Fusobacterium ... 109 2e-22 UniRef50_B8D168 ROK family protein n=12 Tax=Clostridia RepID=B8D... 109 2e-22 UniRef50_B8CYI5 Glucokinase n=1 Tax=Halothermothrix orenii H 168... 109 2e-22 UniRef50_B8I1T3 ROK family protein n=2 Tax=Clostridium RepID=B8I... 108 4e-22 UniRef50_C9L9I3 Putative regulator n=1 Tax=Blautia hansenii DSM ... 108 4e-22 UniRef50_Q67NW4 Transcriptional repressor n=1 Tax=Symbiobacteriu... 107 5e-22 UniRef50_A9WJ57 ROK family protein n=2 Tax=Chloroflexus RepID=A9... 107 6e-22 UniRef50_D1AWX4 ROK family protein n=1 Tax=Streptobacillus monil... 106 1e-21 UniRef50_C0GDS7 ROK family protein n=1 Tax=Dethiobacter alkaliph... 106 1e-21 UniRef50_A6EIN5 ROK n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIN5_9SPHI 106 1e-21 UniRef50_A9BHH0 ROK family protein n=1 Tax=Petrotoga mobilis SJ9... 105 3e-21 UniRef50_D0GID9 Putative xylose repressor n=1 Tax=Leptotrichia g... 105 3e-21 UniRef50_B0KBZ3 ROK family protein n=6 Tax=Thermoanaerobacter Re... 105 4e-21 UniRef50_C7M5N9 ROK family protein n=21 Tax=Bacteroidetes RepID=... 104 6e-21 UniRef50_B2IDS2 ROK family protein n=2 Tax=Rhizobiales RepID=B2I... 104 6e-21 UniRef50_UPI0001C3682C ROK family protein n=1 Tax=Clostridium ha... 103 1e-20 UniRef50_A4BCC4 Probable transcriptional regulator n=1 Tax=Reine... 102 2e-20 UniRef50_Q1CY52 Transcriptional regulator, ROK family n=1 Tax=My... 102 2e-20 UniRef50_UPI00017899E8 ROK family protein n=1 Tax=Geobacillus sp... 102 3e-20 UniRef50_Q47NL3 Putative transcriptional repressor protein n=1 T... 100 7e-20 UniRef50_A0P1G6 Probable transcriptional regulator protein n=1 T... 100 9e-20 UniRef50_B9K0Q3 Transcriptional regulator ROK family n=3 Tax=Rhi... 100 1e-19 UniRef50_C1YJZ1 Transcriptional regulator/sugar kinase n=1 Tax=N... 100 1e-19 UniRef50_B2J5U6 ROK family protein n=5 Tax=Cyanobacteria RepID=B... 99 2e-19 UniRef50_D2PSG4 ROK family protein n=1 Tax=Kribbella flavida DSM... 99 3e-19 UniRef50_B1YIH1 ROK family protein n=1 Tax=Exiguobacterium sibir... 99 4e-19 UniRef50_A0P1K5 Xyl repressor n=2 Tax=Labrenzia RepID=A0P1K5_9RHOB 99 4e-19 UniRef50_C6Y2I2 ROK family protein n=5 Tax=Bacteroidetes RepID=C... 98 4e-19 UniRef50_B6R7J1 Xyl repressor, putative n=1 Tax=Pseudovibrio sp.... 98 6e-19 UniRef50_C0ZA78 Probable transcriptional regulator n=1 Tax=Brevi... 98 6e-19 UniRef50_C8Q8E8 ROK family protein n=1 Tax=Pantoea sp. At-9b Rep... 98 6e-19 UniRef50_P50456 Protein mlc n=167 Tax=Gammaproteobacteria RepID=... 97 7e-19 UniRef50_C7PXL8 ROK family protein n=2 Tax=Actinomycetales RepID... 97 8e-19 UniRef50_Q724N5 Xylose repressor protein n=19 Tax=Listeria RepID... 96 2e-18 UniRef50_Q6A638 Transcriptional regulator, ROK family n=1 Tax=Pr... 96 2e-18 UniRef50_B5GK61 ROK family protein n=2 Tax=Streptomyces RepID=B5... 96 3e-18 UniRef50_C5CNA8 ROK family protein n=1 Tax=Variovorax paradoxus ... 96 3e-18 UniRef50_D2QLA5 ROK family protein n=1 Tax=Spirosoma linguale DS... 96 3e-18 UniRef50_C7PW32 ROK family protein n=1 Tax=Catenulispora acidiph... 96 3e-18 UniRef50_B2V1I0 Putative transcriptional repressor of the xylose... 96 3e-18 UniRef50_Q6SHW3 ROK family protein n=1 Tax=uncultured marine bac... 95 3e-18 UniRef50_C5VDA4 Glucokinase n=3 Tax=Corynebacterium RepID=C5VDA4... 95 4e-18 UniRef50_Q2RLD7 ROK n=1 Tax=Moorella thermoacetica ATCC 39073 Re... 95 4e-18 UniRef50_A1SS79 ROK family protein n=2 Tax=Psychromonas RepID=A1... 95 5e-18 UniRef50_C8WRQ2 ROK family protein n=2 Tax=Alicyclobacillus acid... 94 7e-18 UniRef50_D2PQN5 ROK family protein n=1 Tax=Kribbella flavida DSM... 94 7e-18 UniRef50_UPI0001C35AB4 xylose repressor protein n=1 Tax=Clostrid... 94 9e-18 UniRef50_A9WVF3 Transcriptional regulator, ROK family n=4 Tax=Mi... 94 1e-17 UniRef50_C3JBE1 Glucokinase n=16 Tax=Bacteria RepID=C3JBE1_9PORP 94 1e-17 UniRef50_A8F6K2 ROK family protein n=1 Tax=Thermotoga lettingae ... 93 2e-17 UniRef50_UPI0001B57B53 transcriptional regulator n=1 Tax=Strepto... 92 2e-17 UniRef50_B9YHG7 ROK family protein n=2 Tax=Nostocaceae RepID=B9Y... 92 3e-17 UniRef50_C7MFT1 Transcriptional regulator/sugar kinase n=1 Tax=B... 92 3e-17 UniRef50_UPI0001C31B1F ROK family protein n=1 Tax=Conexibacter w... 92 4e-17 UniRef50_C6LGM9 ROK family protein n=1 Tax=Bryantella formatexig... 92 5e-17 UniRef50_A9KIQ9 ROK family protein n=1 Tax=Clostridium phytoferm... 91 5e-17 UniRef50_A6LW15 ROK family protein n=5 Tax=Clostridium RepID=A6L... 91 6e-17 UniRef50_C9LAU2 Transcriptional repressor of the xylose operon n... 91 6e-17 UniRef50_Q2RK90 Glucokinase n=1 Tax=Moorella thermoacetica ATCC ... 91 7e-17 UniRef50_Q1GMG9 ROK domain protein n=6 Tax=Rhodobacteraceae RepI... 91 7e-17 UniRef50_C4ZGB0 Putative NAGC-like transcriptional regulator n=1... 91 9e-17 UniRef50_C6B504 ROK family protein n=1 Tax=Rhizobium leguminosar... 91 1e-16 UniRef50_UPI00017885B4 ROK family protein n=1 Tax=Geobacillus sp... 90 1e-16 UniRef50_C7QZA5 ROK family protein n=1 Tax=Jonesia denitrificans... 90 1e-16 UniRef50_C0CHG9 Putative uncharacterized protein n=1 Tax=Blautia... 90 1e-16 UniRef50_Q0SHP3 Glucokinase n=22 Tax=Actinomycetales RepID=Q0SHP... 90 1e-16 UniRef50_C2FZL1 ROK family transcriptional repressor protein n=6... 90 2e-16 UniRef50_Q1IZX8 ROK domain protein n=1 Tax=Deinococcus geotherma... 90 2e-16 UniRef50_D1BYG8 ROK family protein n=1 Tax=Xylanimonas cellulosi... 90 2e-16 UniRef50_D1BD00 Transcriptional regulator/sugar kinase n=4 Tax=A... 89 2e-16 UniRef50_B5XVY7 ROK family protein n=6 Tax=Proteobacteria RepID=... 89 2e-16 UniRef50_B8E382 ROK family protein n=2 Tax=Dictyoglomus RepID=B8... 89 2e-16 UniRef50_C0W5B1 Transcriptional regulator/sugar kinase n=1 Tax=A... 89 3e-16 UniRef50_C6B6F2 ROK family protein n=8 Tax=Rhizobium RepID=C6B6F... 89 3e-16 UniRef50_Q11DN8 ROK domain containing protein n=3 Tax=Phyllobact... 89 3e-16 UniRef50_C6CXN7 ROK family protein n=1 Tax=Paenibacillus sp. JDR... 89 3e-16 UniRef50_A9KTE3 ROK family protein n=1 Tax=Clostridium phytoferm... 89 4e-16 UniRef50_C4RIY1 ROK-family transcriptional regulator n=1 Tax=Mic... 88 4e-16 UniRef50_A4FQW3 Transcriptional regulator, ROK family n=1 Tax=Sa... 88 5e-16 UniRef50_D1BZ00 ROK family protein n=1 Tax=Xylanimonas cellulosi... 88 5e-16 UniRef50_B0PG67 Putative uncharacterized protein n=1 Tax=Anaerot... 88 5e-16 UniRef50_A3CKM1 ROK family protein, putative n=2 Tax=Firmicutes ... 88 5e-16 UniRef50_C7R070 ROK family protein n=2 Tax=Micrococcineae RepID=... 88 6e-16 UniRef50_C6W7D4 ROK family protein n=1 Tax=Dyadobacter fermentan... 88 6e-16 UniRef50_A1WMZ8 ROK family protein n=2 Tax=Proteobacteria RepID=... 88 6e-16 UniRef50_A4WVU3 ROK family protein n=9 Tax=Rhodobacteraceae RepI... 88 6e-16 UniRef50_C1A104 Glucokinase n=9 Tax=Actinomycetales RepID=C1A104... 88 7e-16 UniRef50_D1VHL9 ROK family protein n=1 Tax=Frankia sp. EuI1c Rep... 87 7e-16 UniRef50_D1CIH3 ROK family protein n=1 Tax=Thermobaculum terrenu... 87 9e-16 UniRef50_C3QC45 ROK family transcriptional repressor protein n=1... 87 1e-15 UniRef50_B0PDL5 Putative uncharacterized protein n=1 Tax=Anaerot... 87 1e-15 UniRef50_A6DFD9 Probable transcription repressor n=1 Tax=Lentisp... 87 1e-15 UniRef50_C8P1T2 Regulator n=1 Tax=Erysipelothrix rhusiopathiae A... 87 1e-15 UniRef50_C6JJM8 Transcription regulator n=2 Tax=Fusobacterium Re... 87 1e-15 UniRef50_C7Q736 ROK family protein n=1 Tax=Catenulispora acidiph... 87 1e-15 UniRef50_A6WEF3 ROK family protein n=2 Tax=Actinomycetales RepID... 87 1e-15 UniRef50_D1BCW6 Transcriptional regulator/sugar kinase n=1 Tax=S... 87 1e-15 UniRef50_A0KIG1 N-acetylglucosamine repressor n=151 Tax=Gammapro... 86 2e-15 UniRef50_Q1IJT5 Glucokinase n=1 Tax=Candidatus Koribacter versat... 86 2e-15 UniRef50_D2ASC3 Transcriptional repressor of the xylose operon n... 86 2e-15 UniRef50_C6Y2I3 ROK family protein n=4 Tax=Sphingobacteriales Re... 86 3e-15 UniRef50_C7QHP4 ROK family protein n=1 Tax=Catenulispora acidiph... 86 3e-15 UniRef50_B2A6Y1 ROK family protein n=1 Tax=Natranaerobius thermo... 86 3e-15 UniRef50_A7VV97 Putative uncharacterized protein n=1 Tax=Clostri... 86 3e-15 UniRef50_C5CH81 ROK family protein n=1 Tax=Kosmotoga olearia TBF... 86 3e-15 UniRef50_D2PV61 ROK family protein n=1 Tax=Kribbella flavida DSM... 86 3e-15 UniRef50_C6IY97 ROK family protein n=1 Tax=Paenibacillus sp. ora... 86 3e-15 UniRef50_C5BZR0 ROK family protein n=3 Tax=Micrococcineae RepID=... 86 4e-15 UniRef50_B6A233 ROK family protein n=6 Tax=Rhizobiales RepID=B6A... 85 4e-15 UniRef50_C1D0G6 Putative transcriptional regulator, NagC family ... 84 6e-15 UniRef50_C7IE75 ROK family protein n=1 Tax=Clostridium papyrosol... 84 6e-15 UniRef50_C3WAQ8 Predicted protein n=3 Tax=Fusobacterium RepID=C3... 84 6e-15 UniRef50_A7VWZ1 Putative uncharacterized protein n=1 Tax=Clostri... 84 6e-15 UniRef50_UPI00016C4534 transcriptional repressor n=1 Tax=Gemmata... 84 8e-15 UniRef50_D1AGC1 ROK family protein n=1 Tax=Sebaldella termitidis... 84 8e-15 UniRef50_UPI0001C3141A ROK family protein n=1 Tax=Conexibacter w... 84 1e-14 UniRef50_B5I1X5 ROK domain-containing protein n=8 Tax=Streptomyc... 84 1e-14 UniRef50_B5GKQ2 ROK family transcriptional regulator (Fragment) ... 84 1e-14 UniRef50_Q44406 Xylose repressor n=4 Tax=Clostridia RepID=XYLR_A... 84 1e-14 UniRef50_Q9KCZ4 Glucokinase n=101 Tax=Bacillales RepID=GLK_BACHD 84 1e-14 UniRef50_UPI0001C357A7 transcriptional repressor n=1 Tax=Clostri... 84 1e-14 UniRef50_C7QJQ5 ROK family protein n=1 Tax=Catenulispora acidiph... 83 2e-14 UniRef50_P0AF22 N-acetylglucosamine repressor n=95 Tax=Gammaprot... 83 2e-14 UniRef50_C2CV09 NagC/XylR family transciptional regulator n=1 Ta... 83 2e-14 UniRef50_Q185Y3 Putative regulator of a specific sugar metabolis... 83 2e-14 UniRef50_C2CVT4 Transcriptional regulator n=1 Tax=Gardnerella va... 83 2e-14 UniRef50_Q7MLY6 Transcriptional regulator n=62 Tax=Gammaproteoba... 83 2e-14 UniRef50_Q8EL07 Transcriptional repressor of the xylose operon n... 83 2e-14 UniRef50_D2EZG3 ROK family protein n=4 Tax=Bacteroides RepID=D2E... 83 2e-14 UniRef50_B0MNG8 Putative uncharacterized protein n=2 Tax=Clostri... 82 3e-14 UniRef50_Q0FFU4 Xylose operon repressor n=6 Tax=Rhodobacterales ... 82 3e-14 UniRef50_B6QX20 Putative uncharacterized protein n=1 Tax=Pseudov... 82 3e-14 UniRef50_C7PY53 ROK family protein n=1 Tax=Catenulispora acidiph... 82 3e-14 UniRef50_D2PPF8 ROK family protein n=2 Tax=Actinomycetales RepID... 82 3e-14 UniRef50_C9YT50 Putative ROK family transcriptional regulator n=... 82 3e-14 UniRef50_C1I2A3 Xylose repressor protein n=1 Tax=Clostridium sp.... 82 3e-14 UniRef50_A9WM33 Glucokinase n=4 Tax=Micrococcaceae RepID=A9WM33_... 82 5e-14 UniRef50_A5UB07 N-acetylmannosamine kinase n=107 Tax=Gammaproteo... 82 5e-14 UniRef50_B9JIZ2 Transcriptional regulator protein n=1 Tax=Agroba... 81 5e-14 UniRef50_D2PL28 ROK family protein n=18 Tax=Actinomycetales RepI... 81 5e-14 UniRef50_B7DT25 ROK family protein n=1 Tax=Alicyclobacillus acid... 81 7e-14 UniRef50_B4V8E4 ROK-family transcriptional regulator n=5 Tax=Str... 81 7e-14 UniRef50_Q7X438 Glucose kinase (Fragment) n=74 Tax=Streptococcus... 81 8e-14 UniRef50_C9NFC9 ROK family protein n=10 Tax=Streptomyces RepID=C... 80 9e-14 UniRef50_A4XCV6 ROK family protein n=2 Tax=Salinispora RepID=A4X... 80 1e-13 UniRef50_D2Q094 Glucokinase, ROK family n=2 Tax=Kribbella flavid... 80 1e-13 UniRef50_A4FA32 ROK-family transcriptional regulator n=1 Tax=Sac... 80 1e-13 UniRef50_D2B9Z8 Transcriptional regulator, ROK family n=1 Tax=St... 80 1e-13 UniRef50_C7Q6P6 ROK family protein n=1 Tax=Catenulispora acidiph... 80 1e-13 UniRef50_B3DQQ8 NagC-type transcriptional regulator n=7 Tax=Bifi... 80 1e-13 UniRef50_Q1Q3C7 Similar to glucokinase n=1 Tax=Candidatus Kuenen... 80 2e-13 UniRef50_C6WP29 ROK family protein n=1 Tax=Actinosynnema mirum D... 80 2e-13 UniRef50_B0MYS3 Putative uncharacterized protein n=1 Tax=Alistip... 80 2e-13 UniRef50_C8XGH9 ROK family protein n=1 Tax=Nakamurella multipart... 80 2e-13 UniRef50_C7R1E2 ROK family protein n=1 Tax=Jonesia denitrificans... 80 2e-13 UniRef50_C7QYR0 ROK family protein n=2 Tax=Micrococcineae RepID=... 80 2e-13 UniRef50_B8E0R0 ROK family protein n=2 Tax=Dictyoglomus RepID=B8... 80 2e-13 UniRef50_B8DAM8 ROK family protein n=22 Tax=Listeria RepID=B8DAM... 79 2e-13 UniRef50_B0VJ28 Putative Glucokinase (Glucose kinase) (GlcK-like... 79 2e-13 UniRef50_UPI0001C31CF6 ROK family protein n=1 Tax=Conexibacter w... 79 2e-13 UniRef50_C5C1Z1 ROK family protein n=2 Tax=Actinomycetales RepID... 79 2e-13 UniRef50_C9NFP9 ROK family protein n=3 Tax=Streptomyces RepID=C9... 79 2e-13 UniRef50_C5CQ51 ROK family protein n=3 Tax=Comamonadaceae RepID=... 79 2e-13 UniRef50_A9WV98 Transcriptional regulator, ROK family n=1 Tax=Re... 79 3e-13 UniRef50_C1A9L9 Glucokinase n=1 Tax=Gemmatimonas aurantiaca T-27... 79 3e-13 UniRef50_C1F2C5 Glucokinase n=1 Tax=Acidobacterium capsulatum AT... 79 3e-13 UniRef50_Q64GL6 Rep n=2 Tax=Actinobacteria (class) RepID=Q64GL6_... 79 3e-13 UniRef50_A5N8K8 Transcriptional regulator n=31 Tax=Clostridium R... 79 3e-13 UniRef50_B5Y840 Glucokinase n=1 Tax=Coprothermobacter proteolyti... 79 3e-13 UniRef50_UPI0001789593 ROK family protein n=1 Tax=Geobacillus sp... 79 3e-13 UniRef50_A5FUR2 ROK family protein n=1 Tax=Acidiphilium cryptum ... 79 3e-13 UniRef50_C7MQX8 Transcriptional regulator/sugar kinase n=2 Tax=S... 79 4e-13 UniRef50_C9ZFY3 Putative xylose repressor n=2 Tax=Streptomyces R... 79 4e-13 UniRef50_C7Q516 ROK family protein n=1 Tax=Catenulispora acidiph... 79 4e-13 UniRef50_B5J2T6 ROK family protein n=1 Tax=Octadecabacter antarc... 79 4e-13 UniRef50_C8X8S2 ROK family protein n=1 Tax=Nakamurella multipart... 78 4e-13 UniRef50_C6B3W7 ROK family protein n=11 Tax=Rhizobiaceae RepID=C... 78 5e-13 UniRef50_D1BZ04 ROK family protein n=1 Tax=Xylanimonas cellulosi... 78 5e-13 UniRef50_Q024A9 ROK family protein n=1 Tax=Candidatus Solibacter... 78 5e-13 UniRef50_C0W5B5 Glucokinase n=1 Tax=Actinomyces urogenitalis DSM... 78 6e-13 UniRef50_C4IH86 Xylose repressor protein n=1 Tax=Clostridium but... 78 6e-13 UniRef50_C5BVK1 ROK family protein n=1 Tax=Beutenbergia cavernae... 78 6e-13 UniRef50_C6WHR0 ROK family protein n=1 Tax=Actinosynnema mirum D... 78 6e-13 UniRef50_Q9Z557 Putative ROK family transcriptional regulator n=... 78 6e-13 UniRef50_B5YE80 Glucokinase n=2 Tax=Dictyoglomus RepID=B5YE80_DICT6 78 6e-13 UniRef50_C6PY82 ROK family protein n=1 Tax=Clostridium carboxidi... 78 6e-13 UniRef50_D2B0X7 ROK family protein n=2 Tax=Actinomycetales RepID... 78 6e-13 UniRef50_Q8R7I9 Transcriptional regulator n=2 Tax=Thermoanaeroba... 78 7e-13 UniRef50_UPI0001B56BDA ROK family protein n=1 Tax=Streptomyces s... 78 7e-13 UniRef50_B7GP72 ROK family protein n=14 Tax=Bifidobacterium RepI... 77 7e-13 UniRef50_UPI00017890E0 ROK family protein n=1 Tax=Geobacillus sp... 77 9e-13 UniRef50_C6JR29 XylR transcriptional regulator n=2 Tax=Fusobacte... 77 9e-13 UniRef50_D1AFT6 ROK family protein n=1 Tax=Sebaldella termitidis... 77 1e-12 UniRef50_D1CDD5 ROK family protein n=1 Tax=Thermobaculum terrenu... 77 1e-12 UniRef50_C8STB6 ROK family protein n=1 Tax=Mesorhizobium opportu... 77 1e-12 UniRef50_B4U448 Xylose repressor XylR n=3 Tax=Streptococcus equi... 77 1e-12 UniRef50_B5JYP2 ROK family protein n=1 Tax=Octadecabacter antarc... 77 1e-12 UniRef50_C6WCX5 ROK family protein n=1 Tax=Actinosynnema mirum D... 77 1e-12 UniRef50_A4VZ28 Transcriptional regulator/sugar kinase n=7 Tax=S... 77 1e-12 UniRef50_B0PH01 Putative uncharacterized protein n=1 Tax=Anaerot... 77 1e-12 UniRef50_D0LAV5 ROK family protein n=3 Tax=Actinomycetales RepID... 77 1e-12 UniRef50_B5YAB7 Xylose repressor n=1 Tax=Dictyoglomus thermophil... 77 1e-12 UniRef50_D2SD76 ROK family protein n=1 Tax=Geodermatophilus obsc... 77 1e-12 UniRef50_C6PDS2 ROK family protein n=1 Tax=Thermoanaerobacterium... 77 1e-12 UniRef50_C8QA05 ROK family protein n=1 Tax=Pantoea sp. At-9b Rep... 77 1e-12 UniRef50_C6CR95 ROK family protein n=1 Tax=Paenibacillus sp. JDR... 77 2e-12 UniRef50_A9B0V9 ROK family protein n=1 Tax=Herpetosiphon auranti... 77 2e-12 UniRef50_C3WAJ9 Glucokinase n=1 Tax=Fusobacterium mortiferum ATC... 77 2e-12 UniRef50_Q97D10 XylR transcriptional regulator n=1 Tax=Clostridi... 76 2e-12 UniRef50_C0BV65 Putative uncharacterized protein n=2 Tax=Bifidob... 76 2e-12 UniRef50_A9F5U1 Transcriptional regulator of the ROK-family n=1 ... 76 2e-12 UniRef50_C1XFK4 Transcriptional regulator/sugar kinase n=1 Tax=M... 76 2e-12 UniRef50_A9B0H5 ROK family protein n=1 Tax=Herpetosiphon auranti... 76 2e-12 UniRef50_Q1AZ04 ROK domain containing protein n=2 Tax=Actinobact... 76 2e-12 UniRef50_A3TWQ2 Xylose repressor, putative n=1 Tax=Oceanicola ba... 76 2e-12 UniRef50_B0MWK5 Putative uncharacterized protein n=1 Tax=Alistip... 76 2e-12 UniRef50_C6J3G4 Transcriptional repressor n=1 Tax=Paenibacillus ... 76 2e-12 UniRef50_C0QYS2 Transcriptional regulator/sugar kinase n=2 Tax=B... 76 2e-12 UniRef50_C0W6S3 Xylose operon repressor n=1 Tax=Actinomyces urog... 76 3e-12 UniRef50_D1R588 Putative uncharacterized protein n=1 Tax=Parachl... 75 3e-12 UniRef50_Q89SY2 Bll2268 protein n=1 Tax=Bradyrhizobium japonicum... 75 3e-12 UniRef50_C0QRM3 Xylose repressor n=2 Tax=Hydrogenothermaceae Rep... 75 3e-12 UniRef50_B0PGT1 Putative uncharacterized protein n=2 Tax=Clostri... 75 3e-12 UniRef50_C4RIZ4 Transcriptional repressor n=1 Tax=Micromonospora... 75 4e-12 UniRef50_C9XQA7 Xylose repressor n=6 Tax=Clostridium difficile R... 75 4e-12 >UniRef50_P76586 Uncharacterized protein yphH n=68 Tax=Enterobacteriaceae RepID=YPHH_ECOLI Length = 397 Score = 822 bits (2122), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/397 (100%), Positives = 397/397 (100%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI Sbjct: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA Sbjct: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL Sbjct: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 GIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH Sbjct: 181 GIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS Sbjct: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR Sbjct: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI Sbjct: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 >UniRef50_Q1Z3R9 Putative uncharacterized protein n=1 Tax=Photobacterium profundum 3TCK RepID=Q1Z3R9_PHOPR Length = 404 Score = 320 bits (819), Expect = 7e-86, Method: Compositional matrix adjust. Identities = 164/393 (41%), Positives = 241/393 (61%), Gaps = 4/393 (1%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 +NNQQ+R +N +I+ LLY+ K +KS LA+ Q+SIPA+S I+ L + RV N + Sbjct: 14 LNNQQVRQYNSRMIMALLYKNKGMSKSQLAQTTQLSIPAISKIIGALIEQGRVENTTTDH 73 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 +G+ G + ++ T+CLNV+PT I+ + + ++ +F I TP L+ Sbjct: 74 VRKGNFKGLYNVSRNRPDTICLNVSPTCIQAVMVDNEINSCSDFINQAIAPTTPNELIDA 133 Query: 125 IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184 I R++ L++A+HGQVD + G S MPQAPWT +E+KY+LE++L + V Sbjct: 134 IVSVIVACRQVNRATPYRLSIAVHGQVDTLVGSSMHMPQAPWTENIELKYILEQRLNVDV 193 Query: 185 MVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVN 244 +VDNDCVM+ALAEKW + +DFCV+NVDYGIGSSF+IN IYRG +YGSGQIGHT V Sbjct: 194 LVDNDCVMIALAEKWLDGHDGQDFCVLNVDYGIGSSFLINNNIYRGKMYGSGQIGHTKVT 253 Query: 245 PDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPW 304 +G++C CGR GCLET AS AL + +L+ + TQ + ++ + + + Sbjct: 254 DNGIICGCGREGCLETEASSKALCDK---YLRQTSLLTQ-ESVPISFDDFVTRYDRQDAI 309 Query: 305 ITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGP 364 + +AN +G SLYNFL L+IN+I LYG +CA G+ WL I +QT NPF+ Sbjct: 310 AQDVANHAANIVGQSLYNFLITLDINKIILYGNTCALGDKWLKAITKQTLNNPFEDKTAR 369 Query: 365 SVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 T + +G LS + V+G+ YL+VE +L ++ Sbjct: 370 KQDQTLVSYGALSNVELVMGMSYLWVEQELDEL 402 >UniRef50_C4XC10 Putative NagC-like transcriptional regulator n=1 Tax=Klebsiella pneumoniae NTUH-K2044 RepID=C4XC10_KLEPN Length = 191 Score = 203 bits (516), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 101/190 (53%), Positives = 136/190 (71%), Gaps = 2/190 (1%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 R NN ++R NK + L L+R+K+ +KS L++L +SIPAVSNIL EL SE + + Sbjct: 3 RTGFNNARVRQANKSIFLSHLWREKQLSKSQLSQLTGLSIPAVSNILAELLSEGLIGHST 62 Query: 62 DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL 121 + RG +SG++ I G WTLC+N+TPTSIE Q+A+A L ++L ++APTPQAL Sbjct: 63 EHMSKRGVNSGSYQIPEHGAWTLCMNITPTSIEYQLADARLLAVDGHQHLPVNAPTPQAL 122 Query: 122 LSEIEKCW-HRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 L I +CW H HR+ +P H+INLAL +HGQVDP+TGVSQTMPQA W TP+E+KYLLEE+L Sbjct: 123 LEAIVECWRHIHRR-YPQHSINLALGVHGQVDPITGVSQTMPQARWKTPIEIKYLLEERL 181 Query: 181 GIRVMVDNDC 190 G++V VD Sbjct: 182 GVQVRVDKTA 191 >UniRef50_UPI000191270F DNA-binding transcriptional regulator n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. M223 RepID=UPI000191270F Length = 84 Score = 176 bits (446), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 83/84 (98%), Positives = 83/84 (98%) Query: 77 APEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLW 136 APEGDWTLCLNVTPTSIECQVANA LSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLW Sbjct: 1 APEGDWTLCLNVTPTSIECQVANAYLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLW 60 Query: 137 PDHTINLALAIHGQVDPVTGVSQT 160 PDHTINLALAIHGQVDPVTGVSQT Sbjct: 61 PDHTINLALAIHGQVDPVTGVSQT 84 >UniRef50_D2LQJ9 ROK family protein n=2 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LQJ9_BACS4 Length = 419 Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 102/383 (26%), Positives = 183/383 (47%), Gaps = 45/383 (11%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 + ++ NK IL ++ + +++ +A++ +++ P V +I+ EL K V+ ES++ Sbjct: 11 EGMKSLNKTAILNIIRLKGPISRAEIAKMTKLTPPTVGSIVGELIDSKMVIEETGESKSH 70 Query: 68 G---------HSSGTWLIAPEGDWTLCLNVTPT---SIECQVANACLSPKGEFEYLQIDA 115 G ++S ++I G + V T I +P + EY+ + Sbjct: 71 GGRKPIMLTINASSYYVIGIYGAREIIHTVIATLDGKISYSNEEKLSTPPTKDEYIDL-- 128 Query: 116 PTPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 L + +EK + R + + + + + +HG VDP G+S P + +K Sbjct: 129 -----LKNGVEKVLQQKR-IKQNKVLGIGVGMHGLVDPQKGISIFSPHLHIEN-IPIKQE 181 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYG 234 LE I V+VDND LALAE W ++ +F ++V GIGS ++N +IY G + Sbjct: 182 LESAFDIPVLVDNDVRTLALAESWYGEGKDISNFVCLSVGLGIGSGIMLNGEIYTGQYHS 241 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVAS----LSALKKQARV--------WLKSQPVST 282 +G+IGHT+V+ +G C CG YGCLE AS +S +KK R+ W+K Sbjct: 242 AGEIGHTVVDINGPRCQCGNYGCLEAYASELAIISRVKKGLRLGRSTIINDWIKET---- 297 Query: 283 QLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFG 342 +LT + A + G+ ++ ++ + +G+++ N +NIL +++ L GR G Sbjct: 298 ---DSQLTIEMVFDAAEKGDAFVLEVLEETGRFLGIAVANLINILTPSKVILEGRIFEAG 354 Query: 343 ENW----LNTIIRQTGFNPFDRD 361 N L II+++ + D Sbjct: 355 GNTLLSPLKEIIKKSSLRSYSDD 377 >UniRef50_UPI000178870E ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178870E Length = 413 Score = 135 bits (339), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 103/404 (25%), Positives = 183/404 (45%), Gaps = 19/404 (4%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID--DE 63 NN+ +++ N+ I+ LL K+ +A ++ AV+N+ EL ++ + DE Sbjct: 8 NNRHVKNLNRIGIIALLRDYGSLTKAEIAAKMNLTFTAVNNLTDELMKDRLIAEAGFYDE 67 Query: 64 SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVAN----ACLSPKGEFEYLQIDAPTPQ 119 S +RG + +T+ ++++ +S+ V N A + FE Sbjct: 68 S-SRGRKPKLLSLNSGDIYTVGVHISASSVRAAVINLQGKAMMDKYSPFEDNANRGSVVN 126 Query: 120 ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 ++S I+ I + + G +DPV G + P P V +K L+EE Sbjct: 127 VIISTIQAVLDESG--LKSRIIGIGVGAPGPLDPVQGKILSPPNLPGLHQVRLKGLIEEN 184 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQERDFCV-INVDYGIGSSFVINEQIYRGSLYGSGQI 238 + ++ D ++AL E W N + + V ++ D GIGS + N++IY+G +G+G+I Sbjct: 185 TELPTQIEKDANVMALGELWYGNGRHFNHLVYVDADIGIGSGLIFNQKIYQGCPFGAGEI 244 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLK-----SQPVSTQLDPEKLTTAQ 293 GH ++ DG C+CG GCLE +AS A+ ++ L+ S S + L Sbjct: 245 GHCTIDIDGPRCNCGNTGCLEAIASGMAIVRRVGEELRRGAGSSLQSSFDGNDHGLDITD 304 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT 353 +I A G+P + ++ SA +G+SL N +N+L I + G ++ T +R+T Sbjct: 305 VITAGVDGDPLAANMLNESARYVGISLANVINLLTPETIIIGGVLANRYPDYF-TYVRET 363 Query: 354 GFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 +N R + +L V+G G + E L +I Sbjct: 364 SYN---RSLSSFHDKIMLQPSELGEYAGVIGAGTIVFEKYLNEI 404 >UniRef50_D1BAX4 Transcriptional regulator/sugar kinase n=2 Tax=Actinomycetales RepID=D1BAX4_SANKS Length = 410 Score = 134 bits (336), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 103/396 (26%), Positives = 182/396 (45%), Gaps = 12/396 (3%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE-SQT 66 + +R ++ +L + + A + L++ +S+ VS +++E + VV+++ S Sbjct: 7 RDLRSDSRSAVLRAFFSLRTATRQELSQHTGLSVATVSTLVKEFLTAG-VVHVEAVVSSG 65 Query: 67 RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEY-LQIDAPTPQALLSEI 125 G + P + + ++V T +E V + L P+G L +PQ ++ I Sbjct: 66 VGRPLEQLRLDPSRGYIVGVDVAETYVETTVFDLSLDPRGTVSVPLDEHQNSPQYVVDGI 125 Query: 126 EKCWHRHRKLWPDHT---INLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 H L T + + +++ GQV P GVS P W V +K LL +LG+ Sbjct: 126 RLAVHGVLALAGVSTSSVVGVGVSLPGQVQPDLGVSVFAPNWAWHD-VRIKELLTAELGM 184 Query: 183 RVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V VDN +A+AE W +E RD ++N+ G+GS VIN ++ RG +G+ GHT Sbjct: 185 HVHVDNPLKAIAVAELWFGAGREHRDLAIVNLGTGVGSGLVINGELVRGVSNNAGEWGHT 244 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 ++ DG +C CGR GC+E ++ +K P Q + + A + +G Sbjct: 245 LLALDGRLCRCGRQGCVEAYVGVNGMKATLSEIQPDHPALLQQEQRRFVDA-VYEGVVAG 303 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 +P VD +A + SL + +N++N + L G + A +WL ++R + R Sbjct: 304 DPVFVELVDETARYLAASLGDLVNMINPEHVVLTGWTVARLGDWLIPLVRAKIPDAALRS 363 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 SV + L+ + LG+ L +E L + Sbjct: 364 ---SVAVLTVSASSLASSTVALGMSTLTLEHFLAAV 396 >UniRef50_B8CZW2 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZW2_HALOH Length = 383 Score = 125 bits (314), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/340 (27%), Positives = 160/340 (47%), Gaps = 17/340 (5%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGH 69 ++ N+ ILEL+ + +++ +A + ++ VSNI+++L + +V + ++RG Sbjct: 1 MKKINQQTILELINNKGPISRAEIAEITGLTPATVSNIVKDL-LKMDLVRETRQGESRGG 59 Query: 70 SSGTWL-IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKC 128 L + PEG + + L I+ + N + Q+D+ P+ L Sbjct: 60 RKPILLEVNPEGAYVIGLEWGIGEIKAVLLNLNKKVIKTIKK-QVDSFKPEWFLKTTVTI 118 Query: 129 WHRHRKLW--PDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMV 186 + PD L + IHG VDP GVS P W +++ LL+++L I +M+ Sbjct: 119 FEEVTGYVENPDKVFGLGIGIHGLVDPDEGVSLYAPHFGWEN-IKIGKLLKQELQIPIML 177 Query: 187 DNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPD 246 DND M+ALAEKW+ +F IN GIGS+ VI ++ G +G+G+ GH + D Sbjct: 178 DNDVRMMALAEKWEGRD---NFIFINTGPGIGSAIVIKGELLYGRDFGAGEFGHMTIVED 234 Query: 247 GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWIT 306 G +C CG GC+E + S++ L R + S P K LI + + Sbjct: 235 GALCSCGNRGCIEALVSVNNL---VREYNDSLPEHISFHDIKREWNLLIDLAREEKSRAY 291 Query: 307 SWVDRSANAIGLSLYNFLNILN-----INQIWLYGRSCAF 341 S ++++ +G + N +N+LN I +L R F Sbjct: 292 SIIEKAGVYLGKGIGNVVNLLNPEAVVIGGDFLLARDLIF 331 >UniRef50_D1ANX8 ROK family protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ANX8_SEBTE Length = 388 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 93/324 (28%), Positives = 156/324 (48%), Gaps = 12/324 (3%) Query: 19 LELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIAP 78 LE + + ++ L+ +++ AV+ I+++L K + N + T G + I Sbjct: 12 LEEIRTNNKISRIKLSGSLELTPAAVTKIIKKLSGLKLIENNNILKSTGGRPEKSLKINH 71 Query: 79 EGDWTLCLNVTPTSIECQVA---NACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKL 135 L +N P IE ++ L K Y++ + L EI+ + K Sbjct: 72 RYKMILGINFGPEFIETALSYLDGELLCMKRRNFYIRSQEKILRILFEEIDNVLEEYSK- 130 Query: 136 WPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLAL 195 D + + LA+HG V+ G+S P W + ++ L+E+K + V++DND +A+ Sbjct: 131 --DDILGIGLALHGTVNREKGISIFSPHFGWKN-LNIQELIEKKYSLPVIIDNDVRAMAI 187 Query: 196 AEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH-TIVNPDGVVCDCG 253 AE +Q D F VI++ GIG + +N + Y GS + +G+IGH T V C CG Sbjct: 188 AEHEFGRAQNTDNFLVIHISNGIGGAIFLNGKTYEGSDFSAGEIGHITAVENSSRRCSCG 247 Query: 254 RYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSA 313 +YGCLE +S A+K +V + + + ++D T A + EP+ S V S+ Sbjct: 248 KYGCLEAESSDEAIKN--KVLTELEKIQEKVDISLKTEDIYKMAAEKKEPYF-SVVRNSS 304 Query: 314 NAIGLSLYNFLNILNINQIWLYGR 337 IG ++ N LNILNI + + GR Sbjct: 305 YEIGKAVGNLLNILNIKLVIVAGR 328 >UniRef50_Q65CW6 Putative uncharacterized protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65CW6_BACLD Length = 390 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 93/363 (25%), Positives = 173/363 (47%), Gaps = 39/363 (10%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 Q ++ NK +IL + + +++ +A+ +I+ P VS+I++EL + V + T Sbjct: 7 QLMKSVNKSIILNKIRTSEPISRAEIAKETKITPPTVSSIVKELIGQGLV-----KESTL 61 Query: 68 GHSSG----TWLIAPEGDW-TLCLNVTPTSIEC---QVANACL--------SPKGEFEYL 111 G SSG T L G + + ++ P ++EC +A L P ++ Sbjct: 62 GRSSGGRKPTMLHINTGAYYVIGIDAGPETVECVLTDLAGGILQRTSSLLKKPLTNERFM 121 Query: 112 QIDAPTPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVE 171 ++ + A+L + + + I + +A+HG VD TG+S+ P T + Sbjct: 122 EVLKESVYAILGRAD--------VEQEKIIGIGIAMHGVVDAETGMSRIAPILNLTN-IP 172 Query: 172 VKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRG 230 +K +LE++ + V V+ND +AL E W + +N+ G+G+ VIN ++Y G Sbjct: 173 IKDVLEQEFNLTVRVENDARAMALGESWFGGRDDAGSMAAVNIGRGVGAGIVINGKLYHG 232 Query: 231 SLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLT 290 + +G++GH I++ +G C+CG GCL+T+ S A+ ++ + LK + LT Sbjct: 233 AEGIAGELGHMIIDINGEKCECGNRGCLQTIVSGKAIAERGKKRLKE-------STDSLT 285 Query: 291 TAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTII 350 L ++G + IG+ L NF++++N +I L G G ++ I Sbjct: 286 AKDLFEMAENGCQTCIELFQETGVIIGIGLTNFIHLVNPGKIVLGG-GVMKGGRFILPAI 344 Query: 351 RQT 353 R+T Sbjct: 345 RET 347 >UniRef50_A3DCE9 ROK domain containing protein n=2 Tax=Clostridium thermocellum RepID=A3DCE9_CLOTH Length = 404 Score = 121 bits (304), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 92/356 (25%), Positives = 167/356 (46%), Gaps = 21/356 (5%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 I +N+ I + K N++ +A+ +SIPAV +I +L + + I + Sbjct: 10 NSITSNNRMNIFNCILEAKEINRAVIAKKVGLSIPAVMSITDDLIQKGIIYVIGKGKSSG 69 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPT----PQALLS 123 G + P+ + + ++V TS+ V N C ++ PT P L++ Sbjct: 70 GKRPELLAVVPDRFFFVGVDVGRTSVRVVVMNNCRDV-----VYKVSKPTESVEPDELIN 124 Query: 124 EIEKCWHR---HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 +I + K D + + +A+ G ++ TG P W + ++ L++ L Sbjct: 125 QITEMTMESINESKFPLDRVVGIGVAMPGLIERGTGRVIFSPNFGWNN-IALQDELKKHL 183 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQERDFCVI--NVDYGIGSSFVINEQIYRGSLYGSGQI 238 V+V+N L + E +N C++ N+ YGIGS+ V+ +Y G SG+I Sbjct: 184 PFNVLVENANRALVIGE-IKNTQPNPTSCIVGVNLGYGIGSAIVLPNGLYYGVSGTSGEI 242 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQL-----DPEKLTTAQ 293 GH IV G C CG YGC+E++AS A+ ++AR+ + ++ S+ D +K+ Sbjct: 243 GHIIVENHGSYCSCGNYGCIESIASGEAIAREARIAIANKIQSSVFEKCEGDLKKIDAKM 302 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 + A + G+ S V+++A+ IG L +N+L+ QI L G G+ +++ I Sbjct: 303 VFDAAKEGDHLAQSIVEKAADYIGKGLAITINMLDPEQIILCGGLTLSGDFFIDMI 358 >UniRef50_A7VQ47 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQ47_9CLOT Length = 401 Score = 120 bits (302), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 97/359 (27%), Positives = 162/359 (45%), Gaps = 28/359 (7%) Query: 13 HNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSG 72 HNK ++ + ++ +ARL +SIP V I E + + + G Sbjct: 12 HNKEAVINTIRDNSPIFRAEIARLTGLSIPTVMKITDEFKESGLIYESGKRTSEVGKPPK 71 Query: 73 TWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPT------PQALLSEIE 126 P+ + + ++V T + + + LS K L+ APT PQ L I+ Sbjct: 72 LLSFVPDAKYIIGVDVGTTHVGAVLMD--LSAK---ILLREWAPTHDGHTFPQVLEQTIQ 126 Query: 127 KCWHR---HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL--LEEKLG 181 C + + + + + + G + TG P W E +L L+E+ Sbjct: 127 -CIQKILDASSEYAGKILGIGVGVPGLISVETGKIILSPAIGWH---EGNFLAPLKERFR 182 Query: 182 IRVMVDNDCVMLALAEKWQNNSQ--ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 + V+VDN +A+ E W + E FC I + YGIGSS VI +QIY GS SG+ G Sbjct: 183 LPVVVDNVVRAMAMGELWFGAGRGLENFFC-IGLGYGIGSSIVIGKQIYSGSTGTSGEFG 241 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDP-----EKLTTAQL 294 H ++ G +CDCG YGCLE +AS +A+ KQAR + + S D + + Sbjct: 242 HMTIDKSGPLCDCGCYGCLEAIASANAISKQARFAISNGANSMMFDIIHGNLNDINAKVV 301 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT 353 A ++G+ + V++ +G+++ N +N+L+ I L G G+ LN ++ + Sbjct: 302 FDAAKAGDSLANTIVNQVTVYLGIAISNVINLLDPQLIILGGGVSQAGDFLLNPLLDEV 360 >UniRef50_A5V137 ROK family protein n=2 Tax=Roseiflexus RepID=A5V137_ROSS1 Length = 408 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 91/359 (25%), Positives = 168/359 (46%), Gaps = 28/359 (7%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 Q R+HN ++L ++Y + +++ +AR ++ VS ++ EL + + E Sbjct: 9 TRQHTRNHNSRLVLRVIYEDEAISRADIARKTGLTRTTVSAVVNELIEQGLI-----EET 63 Query: 66 TRGHSSGTWL-----IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPT--- 117 G SSG L + E L+ T Q+ A + +G + ++ P Sbjct: 64 GAGQSSGGRLPILLRVVHESHCVAALSFEDT----QIVGALVDMRGGIQR-RVSVPLQGY 118 Query: 118 -PQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTG-VSQTMPQAPWTTPVEVKYL 175 P+ L + + H + + L++ G VDPV G V + + TP+ + L Sbjct: 119 RPEDLPGYLTQLLDDLTADPAPHILGIGLSMPGIVDPVRGMVRRAVNFGLVDTPL--RQL 176 Query: 176 LEEKLGIRVMVDNDCVMLALAE-KWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYG 234 L+++ + V +DN + ALAE + + + + VI++ G+G+ V+N ++ G +G Sbjct: 177 LQDQYRLPVYLDNAARLTALAEYMFGDGAASGNLVVISIGVGVGAGIVLNGALFSGDGFG 236 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTA-- 292 +G+IGH +V +G+ C+CG GCLETVAS++A+ + AR L + P S A Sbjct: 237 AGEIGHVVVADNGIRCNCGNVGCLETVASVTAIVRAAR-RLATDPSSRLRSLASAAAAID 295 Query: 293 --QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 A + G+ + V +G+++ + + +LN+ +I L G A G L + Sbjct: 296 FNTFCRALEEGDDGVAGIVTEVGRYLGIAVAHIVGLLNVERIVLTGAIAALGPPLLEAV 354 >UniRef50_A9B0W0 ROK family protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B0W0_HERA2 Length = 386 Score = 119 bits (299), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 89/345 (25%), Positives = 159/345 (46%), Gaps = 14/345 (4%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 +Q + HN ++ + +Y ++ +ARL ++ VS+ + L E+ V + Sbjct: 11 EQSKLHNYRLVFKAIYDGGAISRVDVARLTNLTPTTVSSNVAILLEEELVQEVGLAPSGG 70 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEK 127 G + + +G + L+V + + N +G Q A +L ++ + Sbjct: 71 GKPATLLSVLDDGRHLIGLDVAGHELRGTIINL----RGAIRQRQTLALNGGNVLEQLYQ 126 Query: 128 CWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVD 187 + + + + G ++ GV Q W + ++ LL ++ G+ V + Sbjct: 127 LIDQLLANTHSPVLGIGIGAPGVINTTAGVVQQAVNLGWHN-LALRDLLGKRYGLPVYLA 185 Query: 188 NDCVMLALAEK-WQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPD 246 ND + A+AE + + + VINV GIG+ IN +I G +G+G+IGH +V P Sbjct: 186 NDSHVTAIAEHTFGSQRNAANLVVINVGRGIGAGIFINGRIVGGDAWGAGEIGHVVVQPH 245 Query: 247 GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWIT 306 G +C CG YGCLETVAS SAL + +TQ + T A++ AA + +P + Sbjct: 246 GTLCRCGHYGCLETVASTSALLTKLD--------ATQPQSQPWTIAEVQAALAANDPTVR 297 Query: 307 SWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIR 351 + VD +A +G+++ N + +LN I L G G + L + R Sbjct: 298 ALVDEAAYYLGIAIANVVGLLNAQSIILAGSLAQLGNDLLQPLRR 342 >UniRef50_B8CZI2 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZI2_HALOH Length = 391 Score = 118 bits (295), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 87/336 (25%), Positives = 164/336 (48%), Gaps = 17/336 (5%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N+ I++ N+ I +L++++ + LA S +SN ++ L + V+ + Sbjct: 7 NSTFIKNLNQKRIFKLIHKEGPITRKELADNTDYSAGTISNHVKALIDQGFVIETEKGYS 66 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAP-----TPQA 120 + G + P+ + + + V T ++ + N + + + I+ P T Sbjct: 67 SGGRKPVYLTVNPDKGYIISVEVEVTRVKIVLFNLKIKVVAKTVF-PINGPAQAKETISQ 125 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 + SEIEK R++ PD + + +A+ G +D G+ + P W+ VKY E+K Sbjct: 126 IFSEIEKIL-SEREIKPDKILGIGVAVPGLIDKEEGLLEFAPNLGWSKVPIVKYF-EDKY 183 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 G+ V+++N+ A+ EK +D ++++ GIG + N ++YRG+ +G+ GH Sbjct: 184 GVPVVLENEANAAAVGEKEFVYPDIKDMVYVSINEGIGCGLIFNGRLYRGAGGNAGEFGH 243 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 I++ DG +C CG GC ET+AS + ++K+ Q ++ + + EK ++ Sbjct: 244 IIIDSDGPLCHCGNSGCWETLASENHIQKE------YQELTGEENVEK---NEIYRKAIE 294 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 GE S V ++A+ IGL L N +N L+ I L G Sbjct: 295 GEDRALSVVKQAAHNIGLGLANIVNSLSPRLIVLGG 330 >UniRef50_C5CH51 ROK family protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CH51_KOSOT Length = 408 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 85/356 (23%), Positives = 160/356 (44%), Gaps = 8/356 (2%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGH 69 I+ N+ +IL+ +Y K+ +++++A+ +S AV+ I EL + V+ + G Sbjct: 17 IKEINEKLILKTIYENKKIDRASIAKFTGLSPAAVTKITAELINRGMVLEAGSAESSGGR 76 Query: 70 SSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCW 129 + P+ L + + +E + + + E ++ P +++ I+ CW Sbjct: 77 KPILLSLNPKFGQFLGVKIGVGYVELVITDFTCTIV-ESARCDTESSDPGTIVNVIKNCW 135 Query: 130 HRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDND 189 + R+ + + +A+ G VD G+ + W V + LL+E V+V ND Sbjct: 136 EKCRQEKQSILLGIGIAVSGVVDSKEGIVRDSFLLGWR-DVPIASLLKEVFKCEVLVMND 194 Query: 190 CVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGV 248 A++ W +++ + VI + GIG + +I+ +I+ G G+IGH V DG Sbjct: 195 VDSFAMSHLWLGKAKDHSNTVVITLGVGIGGALIIDGKIHNAK-GGVGEIGHMTVVKDGA 253 Query: 249 VCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLI----AAWQSGEPW 304 C CG GCLE AS AL K+ +S+ + K + + I A + Sbjct: 254 KCTCGSNGCLEAEASFGALAKKISSITESKKLKELYKSVKQSESSEIEYLREALKRDRKA 313 Query: 305 ITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 + A +G++L N +N+L + + + G + F E +LN I+ N F + Sbjct: 314 FNHVFEEYAVLVGIALKNIINMLAPDYLLIGGEALEFQEKFLNKAIQYAQKNAFGK 369 >UniRef50_A8VZR7 Methyltransferase type 11 n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VZR7_9BACI Length = 404 Score = 113 bits (283), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 91/379 (24%), Positives = 171/379 (45%), Gaps = 13/379 (3%) Query: 14 NKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGT 73 N+ +++ ++ R+ +++ +++ A ++ P V+NI+ +L E V + G Sbjct: 16 NRSLVINIIRRKGPISRTDISKQANLTPPTVTNIVNDLLKEGLVKEGRTGASKGGRRPVL 75 Query: 74 WLIAPEGDWTLCLNVTPTSIECQVAN---ACLSPKGEFEYLQIDAPTPQALLSEIEKCWH 130 I + + ++V I ++N L+ K E I A +L + Sbjct: 76 LSINYNNHYVIGVDVGTGQIRVGLSNLNAELLNRKKETLPAGIKAGEFMTILYRLVDDMI 135 Query: 131 RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDC 190 + + D + + + +HG VD G+S P + + +K LE + I V V+ND Sbjct: 136 TNSDVSRDKIVGIGIGMHGIVDEEKGISIYAPHFDFG-ELPLKERLEARYEIPVKVENDA 194 Query: 191 VMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVV 249 A+AE W +++ + INV GIG+ ++N QI+RG + +G++GH IV+ +G Sbjct: 195 RCSAIAEMWFGDTRANPNLVFINVGDGIGAGVILNGQIHRGHHHIAGELGHMIVDLNGRQ 254 Query: 250 CDCGRYGCLETVASLSALKKQA--RVWLKSQPVSTQL--DPEKLTTAQLIAAWQSGEPWI 305 C CG YGCL TVAS ++++A + L ++ + E + + A G+ + Sbjct: 255 CTCGSYGCLHTVASGIHIRERAIHEITLGRSTALREMRENKEDIDGEVIYEAALHGDEFA 314 Query: 306 TSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPS 365 ++ +GL++ N +N LN +QI L G G + ++ D Sbjct: 315 EELFAQAGRFLGLAVTNVINFLNPDQIVLGGGVMKAGAFVMKPLVETVNRRALTDD---- 370 Query: 366 VKATQIGFGQLSRAQQVLG 384 + T+I L +LG Sbjct: 371 ARKTEITVSSLGSHSALLG 389 >UniRef50_C6B4Z7 ROK family protein n=3 Tax=Rhizobium RepID=C6B4Z7_RHILS Length = 419 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 85/354 (24%), Positives = 160/354 (45%), Gaps = 34/354 (9%) Query: 14 NKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID-DESQTRGHSSG 72 N+ +L+ LY +++ LARLA ++ ++ I+Q + ++ ++ D S +G Sbjct: 42 NRGRVLQALYDNGPKSRADLARLAGVNRTTITGIVQPMIEDQLLIEGDASPSDVKGGKPA 101 Query: 73 TWL-IAPEGDWTLCLNVTPTSIE-CQVA---------NACLSPKGEFE-YLQIDAPTPQA 120 L P+ + + P +I+ C VA A P G+ E ++ + T A Sbjct: 102 RPLYFNPDAPMLGAVLLLPGTIQSCLVALTGEIKAVTKAEFDPHGDTEAFIAVMTKTLTA 161 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 LS+ ++ + +A G +D G T+ AP T + + +L+E+ Sbjct: 162 TLSQAQRA-----------PFGIGVASAGMIDSDKGTILTVNLAPVLTGLPLVAILQERF 210 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 + V++D+ L + ++W + +++F + +G +F I+ ++YRG G++G Sbjct: 211 SLPVVIDHHPRALLVGDRWFGPGRGQQNFAAVYTGEVLGGAFFIDGKVYRGLAGSGGELG 270 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQL-DPEKLTTAQLIAAW 298 H++V DG +C+CG++GC ETVA+L WL+ + V L P +T A+L+ Sbjct: 271 HSVVQIDGALCNCGKHGCWETVAALP--------WLRKEAVRMGLPHPRSVTCARLVKET 322 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQ 352 G +DR + + N L++N L+G G I R Sbjct: 323 DEGSNAAEELLDRYTRNVAFGIVNLQQTLSLNSYVLHGDVAGGGMKAAELIRRH 376 >UniRef50_C5ETA5 ROK domain containing protein n=2 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ETA5_9FIRM Length = 406 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 91/350 (26%), Positives = 165/350 (47%), Gaps = 16/350 (4%) Query: 14 NKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGT 73 N+ +++++ Q NK+ +AR +SIP V I E E ++ ++ + ++ G Sbjct: 5 NRKSVIDIIRTQSPINKAQIARQTGLSIPTVMKITDEFE-RNHLIRVNGKGESNGGKRPE 63 Query: 74 WL-IAPEGDWTLCLNVTPTSIECQVANACLSPKGEF-EYLQIDAPTP-QALLSEIEKCWH 130 L I P+ + + ++V + I+ + + LS K E ++ P Q L+ + H Sbjct: 64 LLEIIPDAYYIIGVDVGRSRIKAIIMD--LSGKLIVKESIKTGRTVPSQQLIERLIYLIH 121 Query: 131 R---HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVD 187 + + + L + + G +D G P W VE+ +E+ +++ Sbjct: 122 QVVQESNISVSQFLGLGIGMPGLLDTENGTVLFSPDFHWEN-VELVKPIEDHFPFYTILE 180 Query: 188 NDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPD 246 N +A+ E W E F +N+ +GIGS+ V N + YRGS SG+IGH + D Sbjct: 181 NSNRAMAMGEHWFGAGVESSYFICLNLGHGIGSAIVQNGEFYRGSCGSSGEIGHITLEKD 240 Query: 247 GVVCDCGRYGCLETVASLSALKKQARVWL---KSQPV--STQLDPEKLTTAQLIAAWQSG 301 G +C CG GCLE +AS +A+ QAR + K Q + Q + E + ++ A + G Sbjct: 241 GPLCSCGNRGCLEALASANAMAGQARELVRQGKGQRILELAQGNEENIDAKEIFDAAKEG 300 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIR 351 + VD++ IG+ L N++N+L+ + + L G G+ + + R Sbjct: 301 DAAAALIVDKAIEYIGIGLANYINLLDPDMLILAGGVTGAGDYLITRLKR 350 >UniRef50_A6X1U5 ROK family protein n=3 Tax=Rhizobiales RepID=A6X1U5_OCHA4 Length = 417 Score = 112 bits (280), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 90/336 (26%), Positives = 164/336 (48%), Gaps = 20/336 (5%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N ++IR HN+ V+L+++ R + +ARL ++ A++NI+ EL SE ++ + + Sbjct: 32 NPERIRDHNRRVVLDVVRRHGPLGRMHIARLTHLTAQAIANIVDELVSENLLMQLGRLKK 91 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQ-IDAPTPQALLSE 124 RG + + PEG T+ + + T + V + LS K ++++ I +P+ L ++ Sbjct: 92 GRGQPPIQFAVNPEGAMTIGVEMGSTHMVTTVLD--LSGKPRTQHVRPIQDVSPERLSTQ 149 Query: 125 IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQA-PWTTPVEVKYLLEEKLGIR 183 + K + +P + + + + G D + G+S P P + ++ +L E G Sbjct: 150 LRKEVDAVKTSFPARLLGIGVVMPGPFD-IEGMSSVGPTTLPGWSGIDAAAVLSEACGES 208 Query: 184 VMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 V+V+ND A+ E+ +F +I GIG + + +RG+ +G+IGH + Sbjct: 209 VLVENDANAAAVGERLFGAGHAISNFAMIYFGAGIGLGMIQDGAPFRGAFGNAGEIGHIV 268 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPV-STQLDP-EKLTTAQLIAAWQS 300 + P+G C CG+ GCLET ASL L+++ L + + T D EKL + Sbjct: 269 ITPNGRSCACGQKGCLETYASLHTLREK----LHAAGIEDTDFDALEKLHGNR------- 317 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 P + WV +A+ + + NIL+ I L G Sbjct: 318 -NPVLMGWVQEAADHLAPMIAMIENILDPETIILGG 352 >UniRef50_A5CYL2 Transcriptional regulator/sugar kinase n=4 Tax=Clostridia RepID=A5CYL2_PELTS Length = 337 Score = 112 bits (279), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 71/213 (33%), Positives = 110/213 (51%), Gaps = 7/213 (3%) Query: 137 PDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALA 196 P + LAL G +D GV P W V ++ +LEE+L + V++DND + AL Sbjct: 63 PQKVLALALGAPGPLDTAGGVIHFAPNLRWNN-VPIRQILEERLSLPVLLDNDANLAALG 121 Query: 197 EKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRY 255 E + + I V G+G +++ ++YRGS G+G+IGH V PDG VC CG Sbjct: 122 EHVFGAGRGCGNMVYITVSTGVGGGLILDGKLYRGSSDGAGEIGHMTVLPDGPVCSCGNR 181 Query: 256 GCLETVASLSALKKQARVWLKSQP-----VSTQLDPEKLTTAQLIAAWQSGEPWITSWVD 310 GCLE +AS +A+ + A + S + DP ++ A + AA G+P + +D Sbjct: 182 GCLEAMASGTAIARAAAELVASGGGRKILAAAGGDPGRINAAAVAAAAAGGDPEAAAIID 241 Query: 311 RSANAIGLSLYNFLNILNINQIWLYGRSCAFGE 343 R+A +G+ + + LN+LN + L G GE Sbjct: 242 RAAGYLGIGVASILNLLNPAMVVLGGGVMEIGE 274 >UniRef50_Q5WCD4 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WCD4_BACSK Length = 403 Score = 111 bits (277), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 89/344 (25%), Positives = 159/344 (46%), Gaps = 26/344 (7%) Query: 9 QIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRG 68 Q+ N+ L L+ + +K+ +A+ Q+S + IL +L E V + + G Sbjct: 2 QLHEVNRINALNLIRLRGPLSKNMIAKQIQVSPTTAATILNKLIDEGYV-----QEEGVG 56 Query: 69 HSSG-----TWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLS 123 HS+G + P+ + + L++ +S+ N + E +Y Q+D+ +A + Sbjct: 57 HSTGGRKPVLYRFNPDKSFIIALSLANSSVRIAALNLEGHVRSE-QYGQVDSLRGEAYID 115 Query: 124 EIEKCWH----RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + K R KL D + +++ + G V G+ + V +K +E Sbjct: 116 FVMKTLSEFIGRFEKL--DECLGISIVVPGIVQAERGIVSYNAKLDLYD-VHLKQKVEAA 172 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 G+R VDND + +AEK ++ ++ I+V G+GS +N IYRG +G+IG Sbjct: 173 FGLRTYVDNDMNAMMMAEKQFGTARYKEMLFISVGEGVGSGLSVNGSIYRGFSGSAGEIG 232 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSAL-KKQARVWLKSQPVSTQL------DPEKLTTA 292 H V P G C CG GCLE + A+ + WL +Q V T + PE + Sbjct: 233 HMSVLPGGPACPCGNQGCLENYVNWPAIYSRILSAWL-TQGVKTAIIESAAGRPEAIKPT 291 Query: 293 QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 + A +G+P+ + V+ A ++ +++ N L++LN + L G Sbjct: 292 DFVEAACAGDPFALTVVEEMAESLAVAITNSLHLLNPQAVVLTG 335 >UniRef50_A1HM15 ROK family protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HM15_9FIRM Length = 412 Score = 110 bits (276), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 102/412 (24%), Positives = 186/412 (45%), Gaps = 42/412 (10%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N++ ++ N+ +L L+ + LA++ ++ PA++ I++EL E +V+ D + Sbjct: 7 NSKYVKKRNRITVLNLIKEHGPIGRQELAQITGLTPPAITGIIREL-LELGLVHEDGYGE 65 Query: 66 TRGHSSGTWL-IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 +RG L + + + + VT VA+ P Y +D P A L+ Sbjct: 66 SRGGRRPVKLTFNSKAGYVIGVEVTRGETTVGVADLMNDPTDIARY-PLDMSEPAAGLAS 124 Query: 125 IEKCWHRHRKLWPDHT------INLALAIHGQVDPVTG-VSQTMPQAPWTTPVEVKYLLE 177 + + R++ D + + +A G V TG V +++ P ++ LE Sbjct: 125 LAELL---RRIMNDEGKQGRSFVGVGIAFPGLVQAKTGTVQRSVNLGPAWRSYPLQEKLE 181 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 + LG+ V ++N+ LAE+W RD +N+ GI + +++++I +G +G Sbjct: 182 DVLGLPVFIENNSNACVLAERWFGGGVCCRDLVYVNLGEGISAGVILDDRIVQGFQGYAG 241 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEK-------- 288 +IGH +++ G C+CG +GCLE + S+ AL KQAR + P DP K Sbjct: 242 EIGHIVIDESGPQCNCGNHGCLEALCSVPALIKQAR---RDLPGLADGDPLKARWQSSGD 298 Query: 289 LTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNT 348 + A L+A Q G + + + R+ + IG ++ +N+ N ++L G+ Sbjct: 299 IELADLLAVAQPGT-YANALLSRAVHWIGRAVAAVINLYNPEAVFLGGQ-------LAGA 350 Query: 349 IIRQTGFNPFDRDEGPS------VKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + R F P RD + AT+I F L V+G L ++ L Sbjct: 351 MAR---FEPILRDAVAAHAFPEIASATRIAFSALGEYPGVIGACALALKGLL 399 >UniRef50_Q9KDW7 Transcriptional repressor of the xylose operon n=2 Tax=Bacillus RepID=Q9KDW7_BACHD Length = 407 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 89/349 (25%), Positives = 168/349 (48%), Gaps = 12/349 (3%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 Q ++ N+ +IL + +++ +A+ +++ P V+NI+ EL EK +V ++R Sbjct: 8 QLMKSMNRSLILNTIRLDGPISRADIAKKTKLTPPTVTNIVAELIEEK-LVRESKMGESR 66 Query: 68 GHSSGTWL-IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIE 126 G L I + + + L+V + + + +G+ T + L+ ++ Sbjct: 67 GGRKPILLTIDAKNSFVIGLDVGGYRVRAVLTDLNGEVEGQTTVELSSDLTEETLIDQLI 126 Query: 127 K---CWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIR 183 K K+ D I + + +HG VD +G++ P T +++K E + Sbjct: 127 KITVTLFEQCKMQKDKVIGIGIGMHGIVDHQSGMAVFAPNFQLTN-IDLKTPFESTFDVP 185 Query: 184 VMVDNDCVMLALAEKWQNNSQERDFCV-INVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 V V+ND LAL E W N Q D + +NV GIG+ V+N++++ G +G+IGHT Sbjct: 186 VFVENDARALALGETWFGNGQGIDHVICVNVGVGIGAGIVLNKRLFHGVHGIAGEIGHTT 245 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQL-----DPEKLTTAQLIAA 297 V+ G C CG YGCL+TVA + LK++A + S + L D ++++ + Sbjct: 246 VDIHGKKCTCGNYGCLQTVAGGNMLKERAIHDIASGRKTMLLEKVEGDMDRISGEIIHQC 305 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWL 346 +G+P ++ + +G+ + N +N +N ++I + G G+ L Sbjct: 306 ALAGDPLSIEILEEAGKYLGIGITNIINFINPDRIIVGGGVSKAGDFVL 354 >UniRef50_A8L0L3 ROK family protein n=25 Tax=Actinomycetales RepID=A8L0L3_FRASN Length = 401 Score = 109 bits (273), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 89/346 (25%), Positives = 147/346 (42%), Gaps = 18/346 (5%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 + +R N+ +L +L R+ ++ +ARL +S VSNI+ EL ++D Sbjct: 23 SQSSLRAANRDRVLGVLRREGSLAQAEIARLTGLSPATVSNIVGELRESG---DVDVRPA 79 Query: 66 TRGHSSGTWL-IAPEGDWTLCLNVTPTSIECQVANACLSPKGE-FEYLQIDAPTPQALLS 123 G + ++ + L+ + + + E + +D + + + Sbjct: 80 VSGGRRAVRVSLSRRSGVVIGLDFGHRHLRVAIGDLAHEVLAEDVVDIDVDHQAQEGIAT 139 Query: 124 EIEKCWHRHRKLWPDHT--INLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 +L D + + + + G +D VTG + P V + E+LG Sbjct: 140 AGRLVDDLLGRLAVDRADVVGVGMGLPGPIDAVTGAVGSSAILPGWVGVPAAAQMSERLG 199 Query: 182 IRVMVDNDCVMLALAE-KWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + V VDND + ALAE W RD + G+GS VI+ +++RG +G+IGH Sbjct: 200 LPVRVDNDANLGALAELHWGAGQGVRDLAYLKASTGVGSGLVIDGRVHRGGAGTAGEIGH 259 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 T ++ +G VC CG GCLET+ S L + R T P+ LT +I + Sbjct: 260 TTLDENGSVCRCGNRGCLETIVGTSVLLESLR---------TSHGPD-LTVRGMIDRAVA 309 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWL 346 G+ V + AIG + N N+LN I + G A GE L Sbjct: 310 GDAGCARVVSDAGRAIGNAAANLCNLLNPQVIVVGGDLAAAGETLL 355 >UniRef50_UPI0001BC4091 ROK family protein n=1 Tax=Fusobacterium sp. 3_1_5R RepID=UPI0001BC4091 Length = 384 Score = 109 bits (273), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 95/343 (27%), Positives = 172/343 (50%), Gaps = 28/343 (8%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGH 69 +R + ILE + Q++ ++ +LA+L Q + V +I+ EL + + ++ E+ T G Sbjct: 1 MRKEKEERILECIREQEKISRISLAKLLQWNPTTVGSIVAELLKKSYIQEVEMEASTGGR 60 Query: 70 SSGTWLIAPEGDWT---LCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIE 126 + L++ + D + L ++ P+ ++ + S +G+ + TP IE Sbjct: 61 KAT--LLSLKEDMSPSILGISFAPSFLQIGIG----SIQGKIFETEKIVLTPLI----IE 110 Query: 127 KCWHRHRKLWPDHTIN-------LALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 K W ++ D +N +++ I G V+ GVS P W +E+K +LEE+ Sbjct: 111 KIWQFLFQII-DKKLNKWKEIRQISVIISGLVNSEKGVSIFSPHYQWRN-IEIKKILEER 168 Query: 180 LGIRVMVDNDCVMLALAEK-WQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 +V V+ND +AL EK + + ++R+F V+N+ G+GSS I+ ++Y GS GSG++ Sbjct: 169 YQKKVFVENDVRAMALLEKSFGSCKKKRNFVVLNIGDGVGSSIFIDNKLYIGSYSGSGEL 228 Query: 239 GHTIVNPDGV-VCDCGRYGCLET-VASLSALKK-QARVWLKSQPVSTQLDPE--KLTTAQ 293 GH VN G+ C CG+ GCLE+ V++LS L K +++ L + Q L+ Sbjct: 229 GHMQVNAKGLRRCSCGKIGCLESEVSNLSILDKISSQIKLGQYSILRQKLKRDGNLSIED 288 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 + A + + S I +L +++LN ++ LYG Sbjct: 289 FLFALGEKDLLALQIAEESVEMITRALDAIISLLNPERVILYG 331 >UniRef50_B8D168 ROK family protein n=12 Tax=Clostridia RepID=B8D168_HALOH Length = 396 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 83/332 (25%), Positives = 154/332 (46%), Gaps = 8/332 (2%) Query: 11 RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHS 70 + N+ +IL ++ R +++ +++ ++ P V+N++ +L E V+ + G Sbjct: 13 KGMNEKLILNIIRRDGPISRADISKKTNLTPPTVTNVINKLVEENLVLEDIMGESSGGRP 72 Query: 71 SGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWH 130 + PE + +V+ + + +A L + Y I+ Q +L + + Sbjct: 73 PQLVRLNPEAFNIVVTHVSSNKLTGYLTDAYLKVSKKVVY-DIERLEKQKILDLMFEVID 131 Query: 131 RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDC 190 K L + +HG V GVS P W V +K L++E+ V V+ND Sbjct: 132 ELIKSASQEVPALGVVVHGPVKAREGVSVFAPNIGWRN-VPIKKLVQERFKKPVCVENDV 190 Query: 191 VMLALAEKWQNNSQERDFCV-INVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVV 249 + L E + + + D V + + YGIGS+ + + +I+RG +G+ GHT V+ G Sbjct: 191 RAMGLGEFYYGSGKGVDNLVFLKIGYGIGSAIIFDGKIFRGISDSAGEFGHTTVDIGGPR 250 Query: 250 CDCGRYGCLETVASLSALKKQARVWLKSQPVST-----QLDPEKLTTAQLIAAWQSGEPW 304 C+CG YGCLE ++S +A+ K LK+ +S + EK+T + A G+ Sbjct: 251 CNCGNYGCLEALSSENAIVKAVVKDLKAGRMSLVRELCDGNLEKVTPDHVYRAADRGDEL 310 Query: 305 ITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 S + +A +G+ + N +N +N I + G Sbjct: 311 SLSVLQEAARYLGIGIANIINSINPKVIVIGG 342 >UniRef50_B8CYI5 Glucokinase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYI5_HALOH Length = 322 Score = 109 bits (272), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 77/238 (32%), Positives = 118/238 (49%), Gaps = 15/238 (6%) Query: 105 KGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQA 164 KGE + +Q + A+L E + L + I L + G ++ G+ P Sbjct: 38 KGEEKVIQNIVSSIDAVLQE--------KGLSREDVITLGVGSPGPLNTQEGIIYLAPNL 89 Query: 165 PWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCV-INVDYGIGSSFVI 223 W V +K +LEE+ GI V+++ND AL EKW Q+ D + I V GIG +I Sbjct: 90 GWRN-VHIKDILEEETGIPVILENDANAAALGEKWFGAGQDVDNLIYITVSTGIGGGIII 148 Query: 224 NEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQ 283 N++I+ G G+G++GH ++ P G VC CG GC E VAS +A+ K R +K + Sbjct: 149 NKKIFHGINDGAGEVGHMVIEPGGPVCGCGNRGCFEAVASGTAINKMGREAVKENKATLL 208 Query: 284 L-----DPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 + DPEK+ + + A + G+ D++ +G+ L N LNI N I L G Sbjct: 209 MELSGGDPEKIDGSLIARAARQGDEVARKIWDKAGYYLGIGLANLLNIFNPEMIILGG 266 >UniRef50_B8I1T3 ROK family protein n=2 Tax=Clostridium RepID=B8I1T3_CLOCE Length = 399 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 79/349 (22%), Positives = 166/349 (47%), Gaps = 11/349 (3%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 NN+ ++ N+ +LEL+ K+ +K+ LA++ +S A I+ L + + + Sbjct: 8 NNKLLKEINETSLLELIRINKQVSKAGLAQITGLSPTACGTIVTNLLDKGYIREAGIGTS 67 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEF------EYLQIDAPTPQ 119 G + + P +++ +++ I + + ++ + EF ++ + + + + Sbjct: 68 KGGRRPILYELTPGSYFSIGVDIDIDYIRFILMD--ITGQVEFKDRISCDFARAASESIR 125 Query: 120 ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + +I + H + D + + +++ G +D +T P W V ++++++ Sbjct: 126 LMEEKISEIIKIH-NIEHDRLLGVGVSVPGMIDNLTHEIIFAPNLGWER-VNLEHMMDRI 183 Query: 180 LGIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 + VDN+ + AL E W ERDF IN+ GIGSS +YRG +G+I Sbjct: 184 GDFPIYVDNEAMCSALCENWIGCCMDERDFVCINMKSGIGSSIFAAGNLYRGCCGSAGEI 243 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH V+ +G C CG YGCLE + S ++ ++A+ ++ ++ D E +T ++ Sbjct: 244 GHITVDQNGPRCACGNYGCLEALVSARSMVEKAQKLVRQGLITDFEDIEAITVDEIFRLA 303 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLN 347 + G + +A +GL++ N +N +N ++I L F E+ ++ Sbjct: 304 REGNESARVILVEAAGYLGLAIANLINTVNPSKIVLGKELAKFSEDIVD 352 >UniRef50_C9L9I3 Putative regulator n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L9I3_RUMHA Length = 393 Score = 108 bits (270), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 88/377 (23%), Positives = 166/377 (44%), Gaps = 29/377 (7%) Query: 12 HHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSS 71 N+ ILE ++R +ST+A+ QI+ V++I E + I E S Sbjct: 4 QENRSTILEYIFRNAPVARSTIAKQTQITPATVTSISGNFIQEGIIQEIGAEDNAADCSP 63 Query: 72 G----TWLIAPEGDWTLCLNVTPTSIECQVAN--ACLSPKGEFEYLQIDAPTPQALLSEI 125 G I P+ + + + T I + N + F + D ++E Sbjct: 64 GRKRILLDIVPDKVYAMGIEFTSRHIRFSICNLRGDTVFQSSFSVKETDNGNITDFIAEK 123 Query: 126 EKCWHRHRKLWPDHTINLALAIHGQVDP----VTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + + + + + +A+ G +D V S PQ L+++L Sbjct: 124 AEDILKENPSFAASIVGMGIAVPGHIDAHQDKVITNSSLCPQFSGEA-------LKKRLN 176 Query: 182 IRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 I ++ +N+ +A + S F +V G+ + + N ++++G+ Y +G+IGHT Sbjct: 177 IPIICENNVRCMAFGRYLFDRSSPDTFAFFHVGAGMFCALIENSKLFQGTNYYAGEIGHT 236 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQP--VSTQLDP--EKLTTAQLIAA 297 IVNP+G C+CG+YGCL+T S + L K R+ +S + L P + LT + A Sbjct: 237 IVNPNGKKCECGKYGCLQTYCSETWLLKYCRLLYESNADTILPSLKPCADALTIEDISNA 296 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGR---SCAFGENWLNTIIRQTG 354 + G+ + +++ + +G+++ N I N ++I+L+G + E ++ I +Q Sbjct: 297 FSLGDTLVGNYISTALKYLGITVSNLAIITNPDKIYLHGNLFSNTEIKEELMDYITKQLL 356 Query: 355 FNPFDRDEGPSVKATQI 371 F + PS + QI Sbjct: 357 FV-----DDPSDQTVQI 368 >UniRef50_Q67NW4 Transcriptional repressor n=1 Tax=Symbiobacterium thermophilum RepID=Q67NW4_SYMTH Length = 403 Score = 107 bits (268), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 86/363 (23%), Positives = 162/363 (44%), Gaps = 14/363 (3%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 + + IR NK +L L+ +++ LA ++ P VS ++ EL E V I Sbjct: 3 VGPELIRAINKQRVLRLVRSAGAMSRADLAERTGLTRPTVSAVVAELLEEGWVEEIGTGE 62 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 + G P W + + + +A+ + F+ ++++ P + + Sbjct: 63 SSGGRPPILLRFNPRARWVIGAELGAGHVRAVLADLAGNVFHRFKQ-RVESRDPLIEVDQ 121 Query: 125 IEKCW-----HRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 +E+ R P + + I G +DP GV + P + V +L+E+ Sbjct: 122 LERAVRYLLDQTPRYGPPTPVAGVGIGITGVIDPEEGVWRYSPHY-QVRDLPVAPMLQER 180 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 L + V ++ND +A E+ +Q D I V G+G+ +I+ ++Y G+ G+G+I Sbjct: 181 LSLPVWIENDARAMAWGERSFGAAQGVDNLAFIRVGVGLGAGIIIDGRLYGGAHQGAGEI 240 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQA--RVWLKSQPVSTQL---DPEKLTTAQ 293 GH +V G+ C CG GCLETV S A+ ++A R+ + + +L DP K+ Sbjct: 241 GHIMVKERGLRCRCGSDGCLETVGSAIAIARRAVQRMAQGEETLIRELCGGDPSKVIATT 300 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT 353 +I A +G+ + + +G+ + +N+LN + + G + G ++L +RQ Sbjct: 301 VIEAADAGDRVAQEILSEAGRFLGIGIGAMINLLNPAMVIIGGGTSRAG-DYLIEPLRQA 359 Query: 354 GFN 356 Sbjct: 360 ALE 362 >UniRef50_A9WJ57 ROK family protein n=2 Tax=Chloroflexus RepID=A9WJ57_CHLAA Length = 408 Score = 107 bits (268), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 90/358 (25%), Positives = 165/358 (46%), Gaps = 21/358 (5%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 Q R N ++L L+Y +++ LARL ++ VS+++ EL +R + I+ Sbjct: 9 TRQHTRDVNLRLVLRLIYELGAVSRADLARLTNLTRTTVSDVVGELI--ERGLVIETGLA 66 Query: 66 TRGHSSGTWLIAPEGDWT---LCLNVTPTSIECQVANACLSPKGEFEYL---QIDAPTPQ 119 T G T ++ +W+ ++V S+E A +S +G I T Sbjct: 67 TGGGIGRTPMLLSVAEWSRPVAAISVNADSVE----GALVSLRGNVGRRISRSIQGQTGA 122 Query: 120 ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 L+ +++ + + + + G ++ +G+ W + + LL E+ Sbjct: 123 DALNTLQETLDELIQTANQPLLGIGVTTPGLINASSGMIVRAVGLEWA-DLPLGQLLHER 181 Query: 180 LGIRVMVDNDCVMLALAE----KWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 G+ V V ND LALAE +W+ + + V+ + G+G+ V+N Q+Y G +G+ Sbjct: 182 YGLPVKVVNDSQCLALAEHLFGEWRGVA---NLVVLKIGKGVGAGIVLNGQLYAGEGFGA 238 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLD-PEKLTTAQL 294 G+IGH +G++C CG GCLETV AL QAR + + P S L+ ++ Sbjct: 239 GEIGHLAFTANGLLCKCGNRGCLETVLGSDALLHQARTAIAANPNSILAAYASDLSLGRI 298 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQ 352 G+P + +A A G ++ +++L++ + + GR AFGE + + R+ Sbjct: 299 AEGAAMGDPVAQHVITTAAAATGAAVATIISLLSVRHVLITGRITAFGETFAELVRRE 356 >UniRef50_D1AWX4 ROK family protein n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AWX4_STRM9 Length = 388 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 89/325 (27%), Positives = 157/325 (48%), Gaps = 15/325 (4%) Query: 18 ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIA 77 ILEL+ + + L+ IS A+S +++L E V+ D S G I Sbjct: 11 ILELISKNHCVTRMDLSLKLNISPAAISKTMKKLIEENLVLEDDTLSSKGGRPRKILKIN 70 Query: 78 PEGDWTLCLNVTPTSIECQVA----NACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHR 133 E + +N P I V+ + + K +F++ ++ L E++ + R+ Sbjct: 71 SEYKKVIGINFGPGFIYISVSKIDGSIIETRKKKFQF-KVSQKLITLLTDELDLLFERYN 129 Query: 134 KLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVML 193 K + + + LA++G V+ G S P W+ ++++ LE K + V+VDND + Sbjct: 130 K---NEILGIGLAVNGIVNTRDGSSIFSPHLKWSN-IKLREYLENKFNLPVIVDNDVRAM 185 Query: 194 ALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNP-DGVVCDC 252 AE ++ + + I + GIGSS +IN +I+ G + +G+IGH I+NP C C Sbjct: 186 LKAEIYKV-KKLSNVMYIYIRDGIGSSIMINNKIFEGVNFCTGEIGHFIINPTSNSRCQC 244 Query: 253 GRYGCLETVASLSALKKQARVW-LKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDR 311 G+YGCLE S S + + +W L+ Q + +L+ +T ++ GE + V Sbjct: 245 GKYGCLEAEYS-SKMIRNKVIWELEKQGI--ELENNYITYKEIFEKASFGEEPYKAIVKE 301 Query: 312 SANAIGLSLYNFLNILNINQIWLYG 336 ++ IG ++ N LN+L+I I + G Sbjct: 302 ASIKIGSTVGNILNVLDIGNIIIAG 326 >UniRef50_C0GDS7 ROK family protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDS7_9FIRM Length = 326 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 62/188 (32%), Positives = 104/188 (55%), Gaps = 6/188 (3%) Query: 164 APWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFV 222 A W+ V+V+ L++KLGI V+ +ND AL E + Q D I V GIG+ + Sbjct: 91 AGWSD-VDVESRLQDKLGIPVIAENDANAAALGESRRGAGQGSGDMVFITVSTGIGAGLI 149 Query: 223 INEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKS--QPV 280 + +IYRGS +G+ GH +V PDG +C CGR GCLETVAS +A+ + A +++ + + Sbjct: 150 TDGKIYRGSRGFAGEAGHMVVKPDGPLCGCGRRGCLETVASGTAIARIANEQMQNGRKTI 209 Query: 281 STQLDPE--KLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRS 338 +++ + K+T + AA + +P + + + +G+ L N +N+LN I + G Sbjct: 210 LSEITAQNSKVTAPDVFAAAKKKDPLAQEVLQGAIHYLGIGLVNLVNLLNPQVIVIGGGV 269 Query: 339 CAFGENWL 346 G++ Sbjct: 270 AEAGDDLF 277 >UniRef50_A6EIN5 ROK n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIN5_9SPHI Length = 373 Score = 106 bits (265), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 89/338 (26%), Positives = 151/338 (44%), Gaps = 15/338 (4%) Query: 31 STLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIAPEG-DWTLCLNV- 88 + L++L S+P V+ I+ +L + VV T G + T+L+ E + + ++V Sbjct: 5 TDLSKLTHKSLPLVTGIVNDLVQDGYVVEHGLAPSTGGRRALTFLLNKEKQKFIVAVSVD 64 Query: 89 ---TPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWPDHTINLAL 145 T I + N + P + L D T AL + + + + + + Sbjct: 65 QLITTVVIYDMLNNIQVEPAKIYLNLA-DEQTSMALFISFITGYIAKSGISEEQILGIGI 123 Query: 146 AIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAE-KWQNNSQ 204 + G ++ GV+ T + +K L + L V +DND ++ALAE K+ Sbjct: 124 GMPGVINAKLGVNHTFFK--IKNEGNLKNYLSDALKFPVYIDNDSSLIALAELKFGEGRN 181 Query: 205 ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASL 264 +D V+N+ +GIG +IN I+RG +G+ H ++ +C CG+ GCLE SL Sbjct: 182 MKDVMVVNIGWGIGLGMIINGDIFRGHSGYAGEFSHIPLSQSNKLCSCGKRGCLEVDTSL 241 Query: 265 SALKKQAR----VWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSL 320 L ++A+ + S+ LD KL + A + G+P S + +A IG L Sbjct: 242 LVLVERAKAEIAAGISSRLEQLFLDDSKLPGEHFLIAARDGDPLAVSILSDAAFLIGKGL 301 Query: 321 YNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 ++ILN I L GR G+ ++ I Q N F Sbjct: 302 STLIHILNPELIVLGGRGATAGKIFMAPI--QHAINEF 337 >UniRef50_A9BHH0 ROK family protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BHH0_PETMO Length = 385 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 83/330 (25%), Positives = 153/330 (46%), Gaps = 15/330 (4%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGH 69 ++ +N +I + L Q ++ +AR ++ VS I L +K + + E +R Sbjct: 9 LKENNAALIFQSLRIQGPMTRAEIARETRLMPSTVSYITNLLIHKKVLKEVGSEDVSRVG 68 Query: 70 SSGTWLIAPEGDWTLC-LNVTPTSIECQVANACLSPKGEFEYLQ-IDAPTPQALLSEIEK 127 G L D+ +V V+N KG+ Y + + LL +I + Sbjct: 69 KKGILLDINYDDFLFIGYDVGSAYSRVIVSNG----KGDILYSKRFVSEKNDKLLKQIYE 124 Query: 128 CWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVD 187 + + + I + +A G +DP GV + EVK +++++ + VD Sbjct: 125 NIKMVKNKF--NIIGIGMAFPGYIDPENGVVIRSHNIDISN-FEVKKVMKKEFNLPAYVD 181 Query: 188 NDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDG 247 ++ +M+A N+ +E+DFCVIN+ GIG V N +I RG +G++GH VNP+G Sbjct: 182 HNTIMMARNLISNNSHKEKDFCVINIGPGIGVGIVSNGKILRGYKNAAGELGHVTVNPEG 241 Query: 248 VVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW-QSGEPWIT 306 C+CG+ GCLET +S A+ + + L+ E ++L+ + G+ Sbjct: 242 RKCNCGKNGCLETESSSKAIVRNYE-----EISGKNLECEGSCESKLVYELAKKGDENAI 296 Query: 307 SWVDRSANAIGLSLYNFLNILNINQIWLYG 336 +R+ +G+ + +NILN ++++ G Sbjct: 297 KAFERAGKYLGIGIATLVNILNPEKVYIAG 326 >UniRef50_D0GID9 Putative xylose repressor n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GID9_9FUSO Length = 398 Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 84/337 (24%), Positives = 158/337 (46%), Gaps = 9/337 (2%) Query: 5 INNQQIRHHNKC--VILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 I +++IR N+ ILE + + +++ LA+ +++ A+S +++L + ++ Sbjct: 4 IESKKIRKLNRTDYRILEKVMKDSEVSRTDLAKEMELTSAAISKAIKKLMLQNIIMEHAT 63 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 T G + ++ E + +N+ I VA+ + + T + +L Sbjct: 64 LESTGGRPRKSLIVNKEYKKIIGVNLGAGFINI-VASHLNGEIIQIRQRKFVYKTQEKVL 122 Query: 123 SEI-EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + E K + I + LA HG VD G P W ++++ LE K Sbjct: 123 DLLYEGISDMVEKFGEESIIGIGLATHGLVDRKKGTVIFSPHFKWK-KLDIRRELERKFN 181 Query: 182 IRVMVDNDC-VMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 ++V+V+ND ML + ++F ++ + G+G++ +N +I+ GS Y +G++GH Sbjct: 182 LKVIVENDVRAMLTAEHMYGCAGNMKNFMLLYIRNGVGAAIFLNGKIFEGSNYSAGEVGH 241 Query: 241 TIVNPDGVV-CDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 IVN + C CG++GCLET S AL + VW + + EK+T ++ + + Sbjct: 242 FIVNEKSTIQCRCGKFGCLETECSEQALINKV-VWELEKKDKNE-SKEKITIDKIYSRSK 299 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 E S V +A G + N LNIL+I+ + + G Sbjct: 300 HKEEPYYSIVKEAAYETGKVIGNILNILDIDNVVVAG 336 >UniRef50_B0KBZ3 ROK family protein n=6 Tax=Thermoanaerobacter RepID=B0KBZ3_THEP3 Length = 408 Score = 105 bits (261), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 88/384 (22%), Positives = 173/384 (45%), Gaps = 20/384 (5%) Query: 1 MRACINNQQ-IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVN 59 M+ I N++ I+ N+ +++ + +++ +++ + + V+NI++ELE++ V Sbjct: 1 MKLRIGNKELIKDINRSLVINEIRMNGPISRTDISKNLNLGLSTVTNIVEELENQNLVHE 60 Query: 60 IDDESQTRGHSSGTWLIAPEGDWTLCLNVTP-------TSIECQVANACLSPKGEFEYLQ 112 + + T G + + + + T+++ ++ + P F+ Sbjct: 61 VGEADSTGGRKPILLEFNYNYGYIIGIKIEENNLIFALTNLKSEIIEKRVVP---FKKGT 117 Query: 113 IDAPTPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEV 172 ++ IEK + + + + + +A+ G VD G W+ VE+ Sbjct: 118 NSNTVLNMVVENIEKLITKIP--YNKNLMGIGVAVSGLVDQQKGKLIYSGMLNWSN-VEI 174 Query: 173 KYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGS 231 +LE K + V +DND LAE W + +E +F V+ GIGS VIN+++Y G Sbjct: 175 GNILENKFNVPVYIDNDVNAYTLAELWYGHGRELNNFIVVTYGSGIGSGIVINKKLYTGD 234 Query: 232 LYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTT 291 G+G+IGH ++ +G C+CG+ GCLE AS + R +K S E L+ Sbjct: 235 FGGAGEIGHMVLVAEGRKCECGQRGCLEAYASEDFIVDYIRDNIKMYSESKIDLTEDLSI 294 Query: 292 AQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWL---NT 348 ++ + G+ + SA +G L + +N+LN + I L G + L N Sbjct: 295 EKVYEYAKEGDMLAIDVLRLSAKYLGYGLLSVINLLNPSTIILAGEGMIAKDIILPVIND 354 Query: 349 IIRQTGFNPFDRDEGPSVKATQIG 372 I++ F ++ +K +++G Sbjct: 355 IVKNNFFKMHEKK--VQIKVSELG 376 >UniRef50_C7M5N9 ROK family protein n=21 Tax=Bacteroidetes RepID=C7M5N9_CAPOD Length = 402 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 89/362 (24%), Positives = 166/362 (45%), Gaps = 33/362 (9%) Query: 32 TLARLAQ---ISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIAPEGDWTLCLNV 88 TLA L + S+P V+ ++ EL + V++ G + + + + +++ Sbjct: 33 TLADLGKELNFSVPTVTKMVGELIEDGIVMDFGKMETPGGRRPNIYGLNQSSGYFIGVDI 92 Query: 89 TPTSIECQVANACLSPKGEFEYLQIDAPTPQA-------LLSEIEKCWHRHRKLWPDHTI 141 + + + N KG+ Q+D +A L EI + + H + D + Sbjct: 93 SQKRVHIGLINF----KGDLIDEQMDISFEEAHPHERFERLCEIIEDFMSHTVVPKDKIL 148 Query: 142 NLALAIHGQVDPVTGVSQTM---PQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEK 198 ++ + I G+V+P TG S + + P T + EEKLGI V +DND +A E Sbjct: 149 SIGINISGRVNPQTGHSYSFFYFDERPLTE------MFEEKLGIDVSIDNDSRAMAYGEY 202 Query: 199 WQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGC 257 + Q E++ +NV +G+G ++N Q+Y G SG+ GH + ++C CG+ GC Sbjct: 203 IKGRVQAEKNIIYVNVGWGLGLGVIVNGQLYYGKSGFSGEFGHITAFENEILCHCGKKGC 262 Query: 258 LETVASLSALKKQARVWL---KSQPVSTQLDPE-KLTTAQLIAAWQSGEPWITSWVDRSA 313 LET AS SAL ++ L +S ++ Q + E ++T +I + ++ Sbjct: 263 LETEASGSALYRKFLEKLHNGQSSLLTQQKENEDEITLNDIIDVALQEDILAIELIEEVG 322 Query: 314 NAIGLSLYNFLNILNINQIWLYGRSCAFGENW---LNTIIRQTGFNPFDRDEGPSVKATQ 370 N +G + +N+ N + + G G+ L + I++ N ++D S+K ++ Sbjct: 323 NTLGKHVAGLINLFNPELVIIGGTLANAGDYLILPLRSAIKKYSLNLVNKD--SSIKVSK 380 Query: 371 IG 372 +G Sbjct: 381 LG 382 >UniRef50_B2IDS2 ROK family protein n=2 Tax=Rhizobiales RepID=B2IDS2_BEII9 Length = 428 Score = 104 bits (259), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 80/343 (23%), Positives = 151/343 (44%), Gaps = 12/343 (3%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE-- 63 + + IR N+ +L+ + R + +++ + + +S VS+++ L E + DE Sbjct: 5 DTELIRAINRFHVLDTIRRFEPVSRAAIGKRTHLSRVTVSSLIATLLQEGLIHEESDETT 64 Query: 64 -SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEY-LQIDAPTPQA- 120 S TRG + + P + + ++ + V N P L P A Sbjct: 65 NSGTRGRPTNLLGLNPNAAYVVGAKLSMHQVFLIVTNLRADPLARLSLPLHPHQLVPDAI 124 Query: 121 --LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMP-QAPWTTPVEVKYLLE 177 LL E + L L + + G +D G+S P AP PV + ++ Sbjct: 125 VALLDEGVRSVVALAGLKLGQIAGLGIGLPGFIDSKAGISHWSPILAPEPKPVALADMVR 184 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSG 236 +LG+ V ++ND +L LAE+W QE D F V+ ++ GIG ++ ++YRG Sbjct: 185 RRLGLAVTIENDANLLTLAERWFGECQENDNFVVVMMEAGIGMGLFLDGELYRGQHGMGT 244 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLD---PEKLTTAQ 293 + GH+ ++ G C CG+YGC+E + A+ ++A +++ D + A Sbjct: 245 EFGHSKIDRHGPRCRCGQYGCIEAFTADYAILREAEKIIRTPAAHEGADDTAEAETRVAT 304 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 ++ + G + + +GL + N +NI++ +I + G Sbjct: 305 VVRLAREGNVALRQIFATAGEILGLGIANLINIIDPAKIVISG 347 >UniRef50_UPI0001C3682C ROK family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3682C Length = 404 Score = 103 bits (257), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 84/346 (24%), Positives = 164/346 (47%), Gaps = 23/346 (6%) Query: 6 NNQ-QIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 NNQ Q+++ N+ +L + R A K+ LA + ++ A+ IL EL+ + + ES Sbjct: 5 NNQVQLKNFNRRTVLGYIRRNGTATKAGLASVTGLTFMAIKKILAELQELNLIRDGQMES 64 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTP--TSIECQVANACLSPKGEF---EYLQIDAPTPQ 119 G + +++I +T+ +++ T I A L+ +G+ E +D Sbjct: 65 GGMGRKAVSYVINENYRYTIGIHINKFITGI------ALLNLRGQILAIERYSMDKEFEN 118 Query: 120 -----ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKY 174 +L+E + + + + + + G +D +GV T P P + +K Sbjct: 119 QNDFVTMLAEAVELVIEKSGVKREDILGIGVGAPGPLDCESGVILTPPNMPMLDYLPLKE 178 Query: 175 LLEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLY 233 LE + G V ++ D ++A AE W N+++ + + VD GIGS +I+ ++ G+ Sbjct: 179 TLEGRTGFPVFLNKDTNVIAFAEYWYRNNRDCSNLAYVEVDMGIGSGLIIDGKLNVGANC 238 Query: 234 GSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQ---PVSTQLDPEKLT 290 +G+ GH ++ +G +C+CG GCLE ++S A+ + L++Q P+ + + LT Sbjct: 239 IAGEFGHITIDINGPLCNCGNRGCLEAMSSGIAVLRMLGEQLENQKDHPLYHKRNA--LT 296 Query: 291 TAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 + + S ++RSA +G+++ N +N + I L G Sbjct: 297 IEDVFEMTDKKDLLTISILNRSAFYVGVAVSNLINTFDPEMIILGG 342 >UniRef50_A4BCC4 Probable transcriptional regulator n=1 Tax=Reinekea blandensis MED297 RepID=A4BCC4_9GAMM Length = 394 Score = 102 bits (255), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 87/340 (25%), Positives = 148/340 (43%), Gaps = 13/340 (3%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVN---IDD 62 + +QIR NK I+ L + L + ++S V+ I EL+ E R++ + Sbjct: 5 DTEQIRLANKKQIIHYLRVHGPIARVDLGQALKLSPATVTAITSELQQEARLIEHPATTE 64 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEY-LQIDAPTPQAL 121 ++ TRG +AP+ L L ++ ++ + N E L A + + L Sbjct: 65 KTNTRGRPRVLIDLAPDAFHVLGLKLSINELKMHLGNHKGQVSDEMVIDLDTRALSEEGL 124 Query: 122 LSEIEKCWHRHRKLWPDHT--INLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 I R P H L +A+ G V+ + G P A V +K+ LE++ Sbjct: 125 FDAIASAVRRFNASVPAHKRPKALGIAVQGVVNGLNGEIIWSP-ALAVRKVPLKHELEQR 183 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 + + V + ND L +A + Q Q DF VI + YGIG VIN ++Y G + + Sbjct: 184 IQLPVTIANDANCLTMAIRHQRRYQSLTDFAVIMLGYGIGMGMVINGELYLGHHGAAAEF 243 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVS--TQLDPEKLTTAQLIA 296 GH+ P+G C CG+ GC+E AL + A P+S L P + + L+ Sbjct: 244 GHSKYYPEGAQCLCGKRGCIEAYVGDYALYRDASALF---PLSWDNSLHPTEDSMQVLVN 300 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 +S + R+ +G + N + +L++ +I + G Sbjct: 301 KAESDSKELRDLFQRAGRVLGHGISNLIALLSLEKIIISG 340 >UniRef50_Q1CY52 Transcriptional regulator, ROK family n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CY52_MYXXD Length = 408 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 93/404 (23%), Positives = 178/404 (44%), Gaps = 30/404 (7%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 ++ +R N ++L +++R+++ +++ +AR ++S VS I+ +LE V +I Sbjct: 10 VDAAGMRAQNSSLLLNMIWRERQISRAEIARRTELSPSTVSAIVADLERSGLVRSIG-AG 68 Query: 65 QTRGHSSGTWLIAPEGDWTLC-LNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLS 123 +RG T + + ++L + + T + + + + P+ L Sbjct: 69 VSRGGRRPTLIGFCDDAFSLIGVEMGATHVTAALTDLRGRVRAYRHASHAVREDPKGTLQ 128 Query: 124 EIEKCWHR--HRKLWPDHTI-NLALAIHGQVDPVTGVSQTMPQAPWTTPV----EVKYLL 176 ++ + + P ++ + +A+ V P S +P P +V+ L Sbjct: 129 KVRELVQEVLDAERVPRRSVAGMGIAVPSPVHP----SAPGKLSPLLVPAWRDYDVQESL 184 Query: 177 EEKLGIRVMVDNDCVMLALAE-KWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 G+ V VDND + AL+E W D I + GIGS +I+ +YRG+ + Sbjct: 185 RSAFGLPVFVDNDANLGALSECYWGAGVNGEDLAYIKLATGIGSGHIIHGDVYRGAGGTA 244 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLI 295 G+I H V+ G C CG GCL T+ +AL ++AR + + D LT +L+ Sbjct: 245 GEISHMAVDSSGPQCVCGLRGCLVTLIGSAALLERARELMGRK------DKRALTVRELV 298 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI---IRQ 352 ++GEP +D + +G+++ LN+LN + L G + G+ L+ + +R+ Sbjct: 299 EGARAGEPAARQVIDGLGHYLGIAVAGLLNLLNPAIVVLGGEISSVGDLLLDPLRASVRK 358 Query: 353 TGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 + S+ T+I L +G L ++A LR Sbjct: 359 RALS-------TSMAETRIVTSALGDRAIAVGAATLVLQAALRD 395 >UniRef50_UPI00017899E8 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017899E8 Length = 386 Score = 102 bits (254), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 77/337 (22%), Positives = 162/337 (48%), Gaps = 27/337 (8%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE-SQTRG 68 ++ N+ + +++ ++ +++ +A+ +S VS I+ EL E V +++ S RG Sbjct: 9 MKRQNRLTVFQIIKNEQPISRAAIAKQTGMSPTTVSRIVSELTEEGYVHETEEQASAGRG 68 Query: 69 HSSGTWLIAPEGDWTLCL-------NVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL 121 S + ++ + N+ ++ V + + E + Sbjct: 69 RKSSLIRLLDTAVISIGVELDRHQANIGFIDVQGNVLCSGSFSRSSDETADVTVTRIAET 128 Query: 122 LSE-IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 + E I +C R++ + + + + G +D G+ Q W V + L+E Sbjct: 129 IEELIAECDIDRRRV-----VGIGVGLPGIIDVDAGIVNFSVQLGWKN-VGLAERLKELT 182 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQERDFCVI-NVDYGIGSSFVINEQIYRGSLYGSGQIG 239 G++ +VDN+ + ALAE+ + ++ + V+ G+GS+ ++ +IYRG +G+IG Sbjct: 183 GLQAVVDNELKVKALAEQLKGSAYGSNRTVLLGFGNGVGSALILEGEIYRGVTNSAGEIG 242 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 HT V+P+G++CDCG+ GCL+T ++ +L +A K +PV T +L A + Sbjct: 243 HTTVDPEGMMCDCGKAGCLQTYINIPSLLSEAS---KIKPVR--------TIEELFAERR 291 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 +G W + +DR+ + +++ N +++ N + + L G Sbjct: 292 AGTRWASYLIDRALAYMAITINNVVSMYNPDSVILSG 328 >UniRef50_Q47NL3 Putative transcriptional repressor protein n=1 Tax=Thermobifida fusca YX RepID=Q47NL3_THEFY Length = 389 Score = 100 bits (250), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 89/361 (24%), Positives = 161/361 (44%), Gaps = 44/361 (12%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGH 69 +R N+ ++ L R ++ +AR +S +VSNI+++L + VV++ + S Sbjct: 15 LRQANRERVIAALRRGGTLTQAEIARATGLSAASVSNIVRDLRAMG-VVSVRETSSNGRR 73 Query: 70 SSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCW 129 + L P G + ++ T + + + N + LQ +++ ++ + Sbjct: 74 ARAVTLQRPPG-VLVAIDFTHSRLTVALGNT------DGRVLQ-----EESIAYDVSEDP 121 Query: 130 HR--HRKLWPDHTI------------NLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 R R +W T+ +A AI G VDP TG+ + P Sbjct: 122 VRGVRRAVWLTETLLTQARVDRSMVLGVAAAIPGPVDPATGLIGDITSMPHWAGFNPGAE 181 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCV-INVDYGIGSSFVINEQIYRGSLYG 234 L+E+LG+ V VDND + ALAE + ++ + V + V +G+G+ ++ +++RG Sbjct: 182 LQERLGLPVSVDNDANLCALAELTEGAARGLEHVVYVKVAHGVGAGVILGGRLFRGMNGN 241 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVAS----LSALKKQARVWLKSQPVSTQLDPEKLT 290 +G+IGH ++ G VC CG GCLET+ L L +Q RV + V Sbjct: 242 AGEIGHIGLDERGQVCRCGNRGCLETLVGTPYLLDMLPQQGRVKHGASLV---------- 291 Query: 291 TAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTII 350 L+ A Q G+P + + A+G + +N++N + + G GE L+ + Sbjct: 292 --DLLEAAQEGDPGCRRIIAEAGAALGRGVAVVVNMVNPQMVIVGGEIAEAGELLLDPMR 349 Query: 351 R 351 R Sbjct: 350 R 350 >UniRef50_A0P1G6 Probable transcriptional regulator protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P1G6_9RHOB Length = 404 Score = 100 bits (249), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 81/317 (25%), Positives = 142/317 (44%), Gaps = 31/317 (9%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N + + HN V+LE++ + ++ ++ + +S V NI+ ELES V +++ Sbjct: 17 NLTRAKTHNHRVVLEIIRTRGPIGRTEISEITSLSRQTVQNIVGELESRGIVEMHAQKAR 76 Query: 66 TRGHSSGTWLIAPEGDWTLCLNV---TPTSIECQVANACL----SPKGEFEYLQIDAPTP 118 RGH + P+ ++L +V + T+I C + + + +P + A TP Sbjct: 77 GRGHPGMMVKLKPDHAYSLGFHVDRLSVTAIACDLLGSIVWQSAAP--------MAAATP 128 Query: 119 QALLSEIEKCWHRHRKLWPDHT---INLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 +A S I R P + LA G + S ++ + L Sbjct: 129 EAANSRILSMVEDFRAAHPAMAKCLFGVGLAAPGPFETGAQTSSGTDATTFSDFGSPENL 188 Query: 176 LEEKL--GIRVMVDNDCVMLALAEK-WQNNSQERDFCVINVDYGIGSSFVINEQIYRGSL 232 E +L G+ V++ ND AL E + F I G+G+ FV+N +Y G+ Sbjct: 189 AELQLAVGLPVVLQNDASAAALGEHVYGIGRSFNSFAFIQFGMGLGAGFVLNGALYPGAS 248 Query: 233 YGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTA 292 +G+IGH +++P+G C CG GCLE SL+AL ++ L +P E + A Sbjct: 249 KNAGEIGHVVIDPNGPACSCGNTGCLERYLSLNALCER----LGLEPT------EPGSVA 298 Query: 293 QLIAAWQSGEPWITSWV 309 ++ A + G+P + W+ Sbjct: 299 RIEALFAEGDPAVLGWI 315 >UniRef50_B9K0Q3 Transcriptional regulator ROK family n=3 Tax=Rhizobiales RepID=B9K0Q3_AGRVS Length = 379 Score = 100 bits (248), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 76/276 (27%), Positives = 128/276 (46%), Gaps = 19/276 (6%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N + R +N+ ++LE + + +A +++ VS I++ELE + ++++ ++ + Sbjct: 7 NQESGRPYNRRIVLESIRLHGPTTRGDIAERVGLTVQTVSTIVRELEDQGLLLSVREKPK 66 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEF-EYLQIDAPTPQ----- 119 RG I PEG + +++TP IE + N +GE E Q AP Sbjct: 67 GRGIPPSALTINPEGGHAVGIHLTPLGIEAALVNL----RGEVVESRQRSAPNAMPDEAF 122 Query: 120 ALLSEIE---KCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 AL+ E+ K R +L LAL VD ++ V T A W V ++ L Sbjct: 123 ALIGEMVADLKASSRRGRLL---GAGLALPGPFDVDSMSFVGPTT-MAGWKN-VYIRQRL 177 Query: 177 EEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 + G+ ++ND AL E+ Q+ D+ + G+G + + + + RG+ + Sbjct: 178 ADATGLPAFMENDMAAAALGEQLYGLGQQFSDYFYLFFSVGLGGAMMHDGVVMRGAWGNA 237 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQA 271 G+IGH PDG +C CG GCLE SL A K+ Sbjct: 238 GEIGHIAAVPDGELCHCGNCGCLERYLSLDAFKRSG 273 >UniRef50_C1YJZ1 Transcriptional regulator/sugar kinase n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YJZ1_NOCDA Length = 396 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 84/358 (23%), Positives = 158/358 (44%), Gaps = 33/358 (9%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGH 69 +R N+ ++++L R+ ++ LAR +S +VSNI++ L + V+ D S R Sbjct: 14 LRRANERRVVDVLRREGTRTQAELARATGLSAASVSNIVRGLRAAGTVLVRDTSSNGRRA 73 Query: 70 SSGTWLIAPEGDWTLCLNVTPTSIECQVANA--CLSPKGEFEYLQIDAPTPQALLSEIEK 127 + T + P + ++ T S+ V ++ + + E Y + S+ E+ Sbjct: 74 KAITLVRQP--GAVVAVDFTADSVRVAVGDSDGNMLAREEIGY---------DVASDAER 122 Query: 128 CWHRHRKLWPDHTI------------NLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 R W TI ++ +I G +DP TG + P Sbjct: 123 GVRR--AAWLAETILLRSRVDRGTVSSVVASIPGPIDPGTGEVGGISCLPRWAGFRPARE 180 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCV-INVDYGIGSSFVINEQIYRGSLYG 234 L E+LG+ V+ +ND + LAE+ + + V + ++ G+G+ +++ Q++RG+ Sbjct: 181 LTERLGLEVLAENDANLAVLAEQHRGAGVGAEHVVHLVLNDGVGAGIMMSGQLFRGAGGT 240 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQL 294 +G+IGH ++P G VC CG GCLET S L + + Q P+ + + Sbjct: 241 AGEIGHIALDPRGHVCRCGNRGCLETFVGASYL-----LDMLPQNTDVARGPDPVRIPDM 295 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQ 352 +AA G+P + + A+G N+ N +++ + G G+ L+ + R Sbjct: 296 VAAALEGDPGSRRIIAEAGTALGQGTAIVANLFNPDRVVVGGELAQAGDLLLDPMRRS 353 >UniRef50_B2J5U6 ROK family protein n=5 Tax=Cyanobacteria RepID=B2J5U6_NOSP7 Length = 319 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 71/241 (29%), Positives = 120/241 (49%), Gaps = 17/241 (7%) Query: 143 LALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNN 202 + ++ G VD TG + + +K LLEE+ G+ V VDND + AL E Sbjct: 63 IGVSFGGPVDASTGTVRLSHHVAGWENIPLKGLLEEEFGVSVGVDNDANVAALGEHRFGA 122 Query: 203 SQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETV 261 Q D I V G+G +++N Q +RG+ +G+IGH +V+P G VC CG+ GC+E + Sbjct: 123 GQGYDSLFYITVSTGVGGGWILNGQPWRGAGGMAGEIGHIVVDPSGPVCLCGKRGCVERL 182 Query: 262 ASLSALKKQARVWLKSQP----------VSTQLDPEKLT--TAQLIA-AWQSGEPWITSW 308 AS + + R L+++P + L + LT T QL++ A +G+ Sbjct: 183 ASGPYMAQNVREILENEPQRRGGFRDGEILRGLAGDDLTLLTGQLVSEAAAAGDDLAKEV 242 Query: 309 VDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENW---LNTIIRQTGFNPFDRDEGPS 365 + ++A A+G+ + N N++N + L G GE++ + + R+T D + P+ Sbjct: 243 LHKAAWALGVGIGNVANLMNPQRFVLGGGVTKAGEDFWRVVRQVARETALPEVDFEIVPA 302 Query: 366 V 366 V Sbjct: 303 V 303 >UniRef50_D2PSG4 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PSG4_9ACTO Length = 393 Score = 99.0 bits (245), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 92/362 (25%), Positives = 160/362 (44%), Gaps = 27/362 (7%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 + + IR N ++L L R +++ LA+ +S+P VS I+ EL V + S Sbjct: 8 SKELIREINSSLVLGEL-RGGLVSRTELAKRTGLSLPTVSEIVGELIGTGVVEEREIASS 66 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVA--NACLSPKGEFEYLQIDAPTPQALLS 123 G + P+ + + + +T T + + NA + + D T ++ Sbjct: 67 GGGRRPVLLGLKPDAGYVIGIKLTETRVVAVLTDLNAAIVQRATVAVANDDVDTVVRTVA 126 Query: 124 EIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIR 183 + K + + LA G +D +GV + + W V++ LLE++ G+ Sbjct: 127 AVVKRFTAKVGPVYGVGVGLA----GMIDRASGVVRHATYSDWHD-VDLAALLEKRTGLP 181 Query: 184 VMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 V+VDND L E+W + D V+++ G+G V++ ++YRG+ G+G+ GHT Sbjct: 182 VVVDNDVNTLVANEQWFGAGRGVSDVAVVSIGRGVGLGMVLDGRLYRGAGGGAGEFGHTK 241 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 V PDG VC CG GCLE++ A+ L + S + Q + + G+ Sbjct: 242 VAPDGPVCACGARGCLESLIGEPAI-------LTATGTS--------SIEQAVDLARGGD 286 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWL---NTIIRQTGFNPFD 359 + D +G ++ N +N+LN I L G + L +T +RQ F+ Sbjct: 287 DAARAVFDHVGRTLGTAVGNLVNLLNPKLIVLAGEGTRASDLLLPGFDTALRQAVFDGLQ 346 Query: 360 RD 361 RD Sbjct: 347 RD 348 >UniRef50_B1YIH1 ROK family protein n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YIH1_EXIS2 Length = 386 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 77/333 (23%), Positives = 154/333 (46%), Gaps = 13/333 (3%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N++ +R +N+ ++L L+ + ++ LA+ +++ P VSNI+ EL +++ V+ + Sbjct: 8 NSKWMRSYNRALVLRLIRMHQPISRVELAQQTKLTKPTVSNIVGELIADQLVMERELGVS 67 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEI 125 G + + + + ++ T +A+ + E E + + + + + Sbjct: 68 NGGRKPILLELVAKEQYVIGIDATSHRFIGVIADLSGNTIHEVETMGKFDTNEELMEAVV 127 Query: 126 EKCWHRHRKLWPDHTIN-LALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184 + C TI+ + +++HG V+P TGV P+ V +K LE++ V Sbjct: 128 QLCQQLIDATDQVGTIHGIGISVHGMVNPETGVILFAPRFHLHD-VALKEHLEQRFAYPV 186 Query: 185 MVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV 243 ++ND LA E D F + GIG ++V++ ++ G + +G++GH + Sbjct: 187 FIENDVRALASFELLFGEGVGVDQFFYLYAGEGIGGAYVLDGKLIDGENHITGEVGHMRL 246 Query: 244 NPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEP 303 + DG +C CG GCLE +A AL + +DP+ T +L +P Sbjct: 247 DLDGPICSCGNRGCLEALAGEKALLRDFEA----------VDPQVKTLTELRRRLTDQDP 296 Query: 304 WITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 T+ R+ IG+ + N ++++N +I L G Sbjct: 297 HATAAYHRAGEYIGIGVLNTIHLINPKRILLGG 329 >UniRef50_A0P1K5 Xyl repressor n=2 Tax=Labrenzia RepID=A0P1K5_9RHOB Length = 421 Score = 98.6 bits (244), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 84/359 (23%), Positives = 158/359 (44%), Gaps = 26/359 (7%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES- 64 + QIR N+ ++L+ L R + L ++ ++S V+ I +L ++ +++++ E Sbjct: 6 DRDQIRRQNRSIVLQALRRNGPMARIDLGQMTRLSPATVTAITSDLLDQELILSLESEEP 65 Query: 65 ---QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVAN----ACLSPKGEFEYLQIDAPT 117 Q RG + P+ +T+ + ++ +I+ + N S + F+ DA + Sbjct: 66 KAPQARGRPRTLLKLNPDAVYTIGVRLSVNNIDLALVNFAGEVVRSERSHFDSATEDAAS 125 Query: 118 -PQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 P+ L+ I + + + P + +A G V+ TGV P A + + L Sbjct: 126 FPETLIGTIRQFLN-DAGIVPSRVREIGVAAQGVVETETGVVAWSP-AFAGRKIPIVGPL 183 Query: 177 EEKLGIRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 + G + ND M+ A W + N F VI +DYG+G ++ +++ G+ + Sbjct: 184 HDAFGADCYISNDTNMITEALHWSDPNRYSGTFAVIMLDYGVGMGLYLDNRLFSGASGTA 243 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTT---- 291 + GH P G +C CG+ GCLE S AL + A P +T DP + Sbjct: 244 AEFGHANHLPGGALCRCGKKGCLEAYLSDYALVRAA----SHLPENT--DPSTIKAGVGG 297 Query: 292 -AQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG---RSCAFGENWL 346 A+LI SG+ + + +G L + +++ +I L G R+ +F E + Sbjct: 298 LARLIELAGSGDKDACNAFHEAGRVLGYGLARVIAMIDPKRIVLTGAAMRAFSFMEKGM 356 >UniRef50_C6Y2I2 ROK family protein n=5 Tax=Bacteroidetes RepID=C6Y2I2_PEDHD Length = 405 Score = 98.2 bits (243), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 84/345 (24%), Positives = 154/345 (44%), Gaps = 29/345 (8%) Query: 15 KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTW 74 K +I+ L + A + L R +SIP V+ + L +E V + T G + Sbjct: 23 KKIIISYLAEKGHATIADLCREMNLSIPKVTTSVTMLITEGVVKDFGKVGSTGGRRPNIY 82 Query: 75 LIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRK 134 + P+ + L ++V I + + + ++I P L++ + + R Sbjct: 83 GLVPDSGFFLGVDVKHQHINIGLIDL------QKVIIKITKYIPYQLINNKDALYELCRL 136 Query: 135 L--------WPDHTI-NLALAIHGQVDPVTGVSQTM---PQAPWTTPVEVKYLLEEKLGI 182 + P + I L + + G+++ TG S + P +T +LE++LGI Sbjct: 137 IKEFIYNTSIPKYKILGLGINLSGRINHETGYSYNFFNFYEDPLST------ILEKELGI 190 Query: 183 RVMVDNDCVMLALAEKWQNN-SQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 + MV+ND +A E +E D +N+DYGIG ++N+++Y G +G++GH Sbjct: 191 KTMVENDSRAMAYGEFSAGVVKEEEDVLFLNLDYGIGMGIMLNKKLYYGKSGFAGELGHV 250 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQ---LIAAW 298 + + ++C CG+ GCLET AS L + + +++ +T +D KL Q +I A Sbjct: 251 PLLNNEIICQCGKKGCLETEASGQGLIRMFKTRVEAGSTTT-IDKNKLGQLQVQDIIRAA 309 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGE 343 + + + + +G + +NI N I L G GE Sbjct: 310 NNDDVLSIELLAKMGEILGRGIAMLINIFNPELIVLGGLLAETGE 354 >UniRef50_B6R7J1 Xyl repressor, putative n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R7J1_9RHOB Length = 402 Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 81/346 (23%), Positives = 154/346 (44%), Gaps = 19/346 (5%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD--- 62 + +Q+R N+ V+L L R + L RL +S+ AV++I +L+ + +++ Sbjct: 6 SREQVRRQNRFVVLSTLRRHTTLARVDLGRLTGLSLAAVTSITADLKDRGLIAEVEEQPN 65 Query: 63 -ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYL----QIDAPT 117 ++ TRG + + + + ++ + + + E +++ + Sbjct: 66 PDANTRGRPRTYLRLRDDVAHVITVKLSVDRVSLALVDYTGHQHAEAKFMVESSDMGGDA 125 Query: 118 PQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGV---SQTMPQAPWTTPVEVKY 174 ALL+ K + L + + +A G V G S T+ + VE+ Sbjct: 126 FIALLAREIKALLKTEPLRARSVMEITVATQGIVGKHNGSIIWSPTIAE----RQVELTA 181 Query: 175 LLEEKLGIRVMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLY 233 L + LGI + ND M+A A Q+ + +F V+ +D G+G I +YRG Sbjct: 182 KLSKTLGITCTLYNDTNMIAEALHRQDAEKYSGNFVVVYIDRGVGMGIFIKNALYRGETG 241 Query: 234 GSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLK-SQPVSTQLDPEKLTTA 292 + + GH+ PDG C CG+ GCLE + AL ++A+ K + P + PE + Sbjct: 242 AAAEYGHSPFTPDGAACRCGKKGCLEAYIADYALYREAQKLPKETSPSAMFYGPEYIQ-- 299 Query: 293 QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRS 338 L A + G+ + A+G+SL +++L+ ++I L G++ Sbjct: 300 NLRARARVGDAQAQKVFTDAGFALGVSLARTISLLDPSRIVLTGKA 345 >UniRef50_C0ZA78 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZA78_BREBN Length = 401 Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 89/353 (25%), Positives = 158/353 (44%), Gaps = 27/353 (7%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 MR + + I+ N+ +IL+ + + ++S +A+ IS V++ + EL + V Sbjct: 1 MRRTGDLKLIQELNRFIILDTIRQFGPISRSDIAKKQGISPTTVTSAVNELIRDGMVAE- 59 Query: 61 DDESQTRGHSSGTWL-IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ 119 D +++G + P+G + + +++T T+I N + K + Y P Sbjct: 60 DGTGESKGGRKPIMVRFCPDGKFLIGVSITNTAITIAEMNLEAATKQKKIY-----PVKA 114 Query: 120 ALLSE-----IEKCWHRHRKLWPDHTINLALAI--HGQVDPVTGVSQTMPQAPWTTPVEV 172 L+S+ + + D + L ++I G VD +GV + + V + Sbjct: 115 GLVSDLIIQYVLDSIGDFLQSVDDVSRCLGISIIAPGIVDAASGVIRFNSKLRLH-DVPL 173 Query: 173 KYLLEEKLGIRVMVDNDCVMLALAEK-WQNNSQERDFCVINVDYGIGSSFVINEQIYRGS 231 K + EE+ G+ +DND +ALAEK + + + V G+GS V+N I+RGS Sbjct: 174 KDMAEERFGLNTWLDNDANAIALAEKNFGGGLNADNLLFVTVGEGVGSGLVVNGSIFRGS 233 Query: 232 LYGSGQIGHTIVNPDGVVCDCGRYGCLETVAS--------LSALKKQARVWLKSQPVSTQ 283 G+G+ GHT V+ G+ CDCG GCLE + LSA+ + + Sbjct: 234 RGGAGEFGHTTVDRSGMRCDCGNVGCLENYVAWPAIYSGILSAVTRGKETLVMDLADG-- 291 Query: 284 LDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 D ++T A G+ VD A+ + + + N +N+ N + I L G Sbjct: 292 -DMTRITFDVFRQALHQGDQVCQDIVDEIASYMSIGIVNLVNLFNPSLIILGG 343 >UniRef50_C8Q8E8 ROK family protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q8E8_9ENTR Length = 377 Score = 97.8 bits (242), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 67/233 (28%), Positives = 118/233 (50%), Gaps = 17/233 (7%) Query: 135 LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLA 194 + PD I L + + G VD V W V + +L+ + G+ V ++ND LA Sbjct: 127 ISPDQLIGLGVTLSGFVDEHQAVCVQSALLGWKD-VPLADMLKAQTGLEVSLENDAKALA 185 Query: 195 LAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCG 253 ++EK +++ R+F +I+ GIGS+ Q++RG+ G+G+I H + P G C CG Sbjct: 186 VSEKIFGLAKKVRNFTLISHSDGIGSAHFFQGQLHRGAHGGAGEIAHCTIEPGGRPCRCG 245 Query: 254 RYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSA 313 + GCL+T+ASL+A+++ R + ++ Q PE T A G + + ++ Sbjct: 246 KRGCLDTLASLTAIREHMR----DKAIAAQTLPELETQA------IKGSSAAIAILHQAG 295 Query: 314 NAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSV 366 NA+GL++ N + + + I + AF + L T++ Q D + PS+ Sbjct: 296 NALGLAIANIVQMNDPELIVIAHHPGAF-DGLLKTVVMQA----IDANVLPSI 343 >UniRef50_P50456 Protein mlc n=167 Tax=Gammaproteobacteria RepID=MLC_ECOLI Length = 406 Score = 97.4 bits (241), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 82/333 (24%), Positives = 157/333 (47%), Gaps = 11/333 (3%) Query: 9 QIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID-DESQTR 67 QI+ N + L+ + ++ L+RLAQ++ +++ I++E+ V ++ E+ R Sbjct: 12 QIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGNR 71 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFE-----YLQIDAPTPQALL 122 G + ++ E L L ++ I + + LS K E L+ D P ++ Sbjct: 72 GRPAVGLVVETEAWHYLSLRISRGEIFLALRD--LSSKLVVEESQELALKDDLPLLDRII 129 Query: 123 SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 S I++ + RH+K T ++A+ + G +D G+ MP + + LE+ G+ Sbjct: 130 SHIDQFFIRHQKKLERLT-SIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGV 188 Query: 183 RVMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V + +D +AE S+ RD + +D+ +G+ + + + +IGHT Sbjct: 189 PVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHT 248 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 V+P G C CG +GCLET+AS+ ++ + A++ L +Q +S+ L + LT L A G Sbjct: 249 QVDPYGKRCYCGNHGCLETIASVDSILELAQLRL-NQSMSSMLHGQPLTVDSLCQAALRG 307 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWL 334 + + +G L +N+ N +I + Sbjct: 308 DLLAKDIITGVGAHVGRILAIMVNLFNPQKILI 340 >UniRef50_C7PXL8 ROK family protein n=2 Tax=Actinomycetales RepID=C7PXL8_CATAD Length = 390 Score = 97.4 bits (241), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 91/373 (24%), Positives = 163/373 (43%), Gaps = 21/373 (5%) Query: 29 NKSTLARLAQISIPAVSNILQELESEKRVVNIDDE--SQTRGHSSGTWLIAPEGDWTLCL 86 ++ LAR IS AV+ + + + +D E + G I P+ ++ + + Sbjct: 30 SRVDLARRLGISSAAVTKAARPFLDDGYLHELDSERTAPGAGRPVSPLAITPDREFVIGV 89 Query: 87 NVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWPD---HTINL 143 VT + VA+ + + Q+ P +L+ + P+ T + Sbjct: 90 KVTADEVIGVVADLKARIRNS-AHRQLPDCEPATVLATLAALVEELLDADPELRGKTRRM 148 Query: 144 ALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNS 203 +A+ G VD V GV + P W V++ + + G+ V+V+ND L +AE W + Sbjct: 149 GVAVSGDVDRVRGVVRLSPLLGWQD-VDLAGPVGDATGLVVVVENDVKALTVAEHWFGDG 207 Query: 204 -QERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVA 262 DF ++ V GIG V ++ G+ +G++GH V+ G VC CG GC+E +A Sbjct: 208 VGTDDFTLVTVGAGIGCGIVTGGRLLSGAYGVAGEVGHVCVDASGPVCHCGARGCVEAIA 267 Query: 263 SLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYN 322 + A+ +AR+ T D T A +A +SG P + + + AIGL++ Sbjct: 268 ATEAIVGRARLL-------TGRDGLTFTEAAELA--RSGSPEVCALFSEAGTAIGLAITA 318 Query: 323 FLNILNINQIWLYGRSC-AFGENWLNTIIRQT-GFNPFDRDEGPSVKATQIGFGQLSRAQ 380 +N++ +I + G A+ + T IRQ + F + + F + +R Sbjct: 319 VVNLIGPERIVVSGEGLDAY--DLFETEIRQAYATHAFGAAARCPLTIRPLPFEEWARGA 376 Query: 381 QVLGIGYLYVEAQ 393 +GI L+ A+ Sbjct: 377 AAVGIQTLFAPAR 389 >UniRef50_Q724N5 Xylose repressor protein n=19 Tax=Listeria RepID=Q724N5_LISMF Length = 404 Score = 96.3 bits (238), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 83/351 (23%), Positives = 148/351 (42%), Gaps = 15/351 (4%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N I+ N+ +L L+ + ++ +A+ + ++ IL +L+ E ++ + S Sbjct: 8 NKDLIKDINRYTVLNLIREKGEITRTEIAKKCDFGMSTLTYILDDLQQEGIILEGAETSS 67 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGE-FEYLQIDAPTPQALLSE 124 T G + L+ D+ ++V E Q+ A E E I + + Sbjct: 68 TGGRRA--KLVRFNKDYGFVVSVKVE--EEQLLFALTDLNAEIMENTSIPFSSEKKPEEA 123 Query: 125 IEKCWHRHRKLWPD----HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 IE +K+ + H + + +AI G V+ G W V ++ +L Sbjct: 124 IELIAKNVKKMCENRDMNHLLGVGIAISGLVNRRKGTVIRSTMLGWEN-VALEAMLHAYF 182 Query: 181 -GIRVMVDNDCVMLALAEKW-QNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 I V VD + LAE W Q +F ++V G+G S VIN QIY G+ G+G+ Sbjct: 183 PDIPVYVDKNINCYTLAELWLGEGKQSNNFATVSVGAGLGLSVVINRQIYYGAQGGAGEF 242 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GHT + P G C CG+ GCLE AS + + ++ P S D ++ + Sbjct: 243 GHTTIQPGGYKCHCGQKGCLEMYASEFYFRNRGEELKEAYPTSELKD---FHFDKVAKSA 299 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 ++G+ T + + +G + N +N N ++ + G + +L I Sbjct: 300 RAGDEMATELMGKMGEYLGYGIRNIINTFNPEKVIIVGEGLHHRDLFLTKI 350 >UniRef50_Q6A638 Transcriptional regulator, ROK family n=1 Tax=Propionibacterium acnes RepID=Q6A638_PROAC Length = 397 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 68/227 (29%), Positives = 105/227 (46%), Gaps = 14/227 (6%) Query: 118 PQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 P+ + + K WH+ P ++ LA+ G VD V W+ ++ +L Sbjct: 130 PEKTIKALAKGWHKLGDEIPGAVVSAGLAVPGPVDGSGHVVGAARMPGWSGK-DIAGMLA 188 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQERDFCV-INVDYGIGSSFVINEQIYRGSLYGSG 236 ++L + +++ND + E W + RD C+ + GIG+ +V YRGS +G Sbjct: 189 QELAVPSVIENDARAATIGE-WNCRGRHRDSCIYVKAGTGIGAGWVSGGVAYRGSRGLAG 247 Query: 237 QIGHTIVNPDGVV-CDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLI 295 I H V+ D + C CG GCLETVAS +A+ +Q +L TT+QL+ Sbjct: 248 DITHLRVHTDNPLPCTCGNSGCLETVASGAAILRQL----------GRLGSSISTTSQLV 297 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFG 342 A SG+P S V + +G L N +N LN +I L G G Sbjct: 298 TAENSGDPQAVSLVRDAGMRLGEVLSNLVNFLNPVRIVLGGSMSQMG 344 >UniRef50_B5GK61 ROK family protein n=2 Tax=Streptomyces RepID=B5GK61_9ACTO Length = 402 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 83/357 (23%), Positives = 154/357 (43%), Gaps = 13/357 (3%) Query: 14 NKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGT 73 ++ ++++L+ ++ L + ++ P +SNI++ L + V D TRG Sbjct: 7 SRALVVDLIRSSGPISRVELVKSTGLTQPTISNIVRRLIEDGVVRETGDTVATRGKPRSL 66 Query: 74 WLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPT---PQALLSEIEKCWH 130 +I + + +++ ++ C V + + G L + AP P+A+ + + Sbjct: 67 LVINSHAAYGIGIHLATDALTCVVTD---TRGGTVGRLLVAAPPSGDPEAVTEALAGLYR 123 Query: 131 ---RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVD 187 L LA+ G VD G +P T + + L LG+ V+VD Sbjct: 124 DVVAGLGLPARGVAGLAVVGPGPVDVAQGSFLALPGRSPATGLALAPALGGALGVPVLVD 183 Query: 188 NDCVMLALAEKWQNN-SQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPD 246 +D + E W S+ R F + ++ GIGS V++ ++RG+ +G++GHT V Sbjct: 184 SDASAATVGEFWGRQVSRARTFGCLYMNSGIGSGVVLDGALHRGASSNAGKLGHTAVVRG 243 Query: 247 GVVCDCGRYGCLETVASLSALKKQARVW--LKSQPVSTQLDPEKLTTAQLIAAWQSGEPW 304 G C CG GCLE A+ L ++AR L + + DP L A G+ Sbjct: 244 GRECPCGNRGCLEQYAAPRVLVERARALPGLARRLRIAEGDPVDRAFDVLARAALYGDEA 303 Query: 305 ITSWVDRSANAIGLSLYNFLNILNINQIWLYGRS-CAFGENWLNTIIRQTGFNPFDR 360 + +D SA + + N+ +++ + L G A G +++ I + + F R Sbjct: 304 ARALLDESAELLAEAAVTLTNLWDLDTLVLAGPGFAAAGSLYVSAIRARLAASAFTR 360 >UniRef50_C5CNA8 ROK family protein n=1 Tax=Variovorax paradoxus S110 RepID=C5CNA8_VARPS Length = 389 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/276 (25%), Positives = 121/276 (43%), Gaps = 15/276 (5%) Query: 125 IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184 + +C H P + + + + + G V+ G P P ++ L E V Sbjct: 118 LARCGH-----GPKNVLGIGIGVPGPVNFEIGQLVNPPLMPAWDSFSIRDYLREDYAAPV 172 Query: 185 MVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVN 244 VDND ++AL E W+ +F VI + GIG V + ++YRG+ +G +GH V+ Sbjct: 173 FVDNDVNLMALGELWRLKRSLNNFLVIKIGTGIGCGIVCHGEVYRGAAGSAGDVGHICVD 232 Query: 245 PDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDP-----EKLTTAQLIAAWQ 299 DG C CG GC+E +A+ A+ + A V S L ++ + A + Sbjct: 233 QDGPRCHCGNVGCVEAMAAGPAITRMA-VQAAEAGESAMLAECLRVHGRIDAIDVGQASR 291 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 +G+ + R+ N IG L + +N N + +++ G G +L +RQ+ + Sbjct: 292 AGDTAANGIIQRAGNLIGQMLASVVNFFNPSHVFIGGGITRIGPLFLAA-VRQS---VYQ 347 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 R S + +I + L ++G G L + L+ Sbjct: 348 RSLALSTRHLEIQYTPLGVQGGLVGAGVLAMHETLK 383 >UniRef50_D2QLA5 ROK family protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLA5_9SPHI Length = 410 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 84/367 (22%), Positives = 173/367 (47%), Gaps = 19/367 (5%) Query: 18 ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIA 77 +L LY + + L R+ S+P+V+++++EL + V I + + G + + Sbjct: 29 VLAHLYSEGTCTLAHLTRMLHSSVPSVTSLVEELIDNQWVTPIGTATGSNGRRPVLFGLN 88 Query: 78 PEGDWTLCLNVTPTSIECQVANA--CLSPKGEFEYLQIDAPTPQALLSEIEKCWHR---H 132 + + L+V+ + N + +G+++ D P+ L+ + +H Sbjct: 89 TKSHYVAVLDVSTHDTKILFMNVQRKVIFRGDYDLRLNDNPS---FLTSLVHYFHNALAD 145 Query: 133 RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVM 192 ++ D I + +++ G VD G++ T T ++L E L V + ND Sbjct: 146 SEISIDDLIAVGISMPGLVDARRGLNLTYKNLHQTGESLPQWLSAE-LNKPVYLINDTKA 204 Query: 193 LALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCD 251 L E +Q ++ IN+D+G+G ++N ++++G+ +G++GH V+PDG +C Sbjct: 205 TVLGESRFGGAQGKKQVLAINIDWGVGLGIIVNGEVFQGASGFAGELGHIQVDPDGELCF 264 Query: 252 CGRYGCLETVASLSALKKQARVWLKSQPVST----QLDPEKLTTAQLIAAWQSGEPWITS 307 CG+ GCL T+ S SAL K+A+ + + VS + +++ ++I A SG+ + Sbjct: 265 CGKIGCLSTITSASALVKRAQTDILAGQVSKLATFRDHVDQIDIDEVINAANSGDSYAID 324 Query: 308 WVDRSANAIGLSLYNFLNILNINQIWLYG---RSCAFGENWLNTIIRQTGFNPFDRDEGP 364 + + +G L +++ N I + G ++ AF N + I + + F D Sbjct: 325 ILHETGYQLGKGLAIAISLFNPEIIVVDGVLFKAAAFILNTIEQAISKYCLSDFRND--M 382 Query: 365 SVKATQI 371 +++ TQ+ Sbjct: 383 TIEVTQL 389 >UniRef50_C7PW32 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PW32_CATAD Length = 396 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 81/354 (22%), Positives = 152/354 (42%), Gaps = 17/354 (4%) Query: 7 NQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQT 66 + +R N+ ++ Y + + +A +S+ I+ EL + + Sbjct: 6 SGDLRRANRVEVMRSFYGGRTLTRGDVAAQLGVSVATAGTIIGELTAAGLLAETQSPRSG 65 Query: 67 RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPT---PQALLS 123 G + + + + +++ T + ++ + ++ G F+ APT P +++ Sbjct: 66 GGRPASQLTMRAGAPYLVGVDLAETYVIAEIFDQAMTRVGHFQTPV--APTDDDPDSVVG 123 Query: 124 EI----EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + + + + +++ GQVD GVS P W V L ++ Sbjct: 124 HVVDSVQGVIAALDGVSAADVAGVGVSLPGQVDREGGVSVHAPNWGWHG-VPFTSLFHKR 182 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 + V++DN + LAE + + D V+N+ G+G V ++ RG +G+ Sbjct: 183 CDLPVLLDNPLKAITLAEMMFGEAGDHDDAVVVNLGTGVGLGVVAEGRLLRGRTNTAGEW 242 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDP--EKLTTAQLIA 296 GHTI+ DG+ C CG GC+E +AL + P S L P + T A+L Sbjct: 243 GHTILVADGLPCHCGSRGCVEAYVGAAALLD---LLTDVDPDSPLLVPGDQAATVARLAE 299 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG-RSCAFGENWLNTI 349 A S +P + ++R A +G++L N +N+LN + + G S AFGE L + Sbjct: 300 AVASADPVAVATLERFARPLGMALANAVNMLNPELLVVGGWVSAAFGEPLLAAV 353 >UniRef50_B2V1I0 Putative transcriptional repressor of the xylose operon n=2 Tax=Clostridium botulinum E RepID=B2V1I0_CLOBA Length = 379 Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 86/337 (25%), Positives = 159/337 (47%), Gaps = 32/337 (9%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 + +R NK I++ + +K+ +++ L+ ++ VS I++EL + + E T Sbjct: 7 KDLRSLNKIKIIQSILYKKQISRADLSTFTSLNKATVSVIVKELLDLRLI-----EESTI 61 Query: 68 GHSSG-----TWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEY-LQIDAPTPQAL 121 G S+G I + + + +++ T I+ V N LS K Y ++ + + + Sbjct: 62 GDSTGGRKPIILTINEDIGYVIAIDINITMIDIIVTN--LSNKILSSYSIKNEDNNFETI 119 Query: 122 LSEIEKCWHRHRKLWPDHTINL---ALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 + + H+ + + P NL +LA+ G VD + G+ + +PQ W ++++ LE Sbjct: 120 FNNLFSLIHKIQNVMPSSIYNLVGISLAVRGVVD-LNGLIKFIPQLGWKN-IDIRSKLEN 177 Query: 179 KLGIRVMVDNDCVMLALAE-KWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 + + + ++ND + A+AE K N D V+++D I S + N Q+ +G L + Sbjct: 178 EFNVPIYIENDGNLSAMAEHKLMPNYN--DMLVVDIDDVITSGIICNSQLVKGFLGFANA 235 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 IGH ++N DG C CG+ GCLE S A+ +S PV D E + + Sbjct: 236 IGHHVINCDGKQCTCGKRGCLEQYCSNLAILSHIN---QSLPVK---DIE-----EFVNL 284 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWL 334 + P+ S +D + + + L N + ILN I L Sbjct: 285 VKEENPYALSTLDYFIDHLAIGLTNLIFILNCEVIVL 321 >UniRef50_Q6SHW3 ROK family protein n=1 Tax=uncultured marine bacterium 159 RepID=Q6SHW3_9BACT Length = 307 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 49/166 (29%), Positives = 85/166 (51%), Gaps = 2/166 (1%) Query: 172 VKYLLEEKLGIRVMVDNDCVMLALAE-KWQNNSQERDFCVINVDYGIGSSFVINEQIYRG 230 V+ +L+E+ G+ V + ND M ALAE K+ I G+G ++ ++ G Sbjct: 93 VRDMLKERTGVDVKLGNDVNMAALAEYKFGAGKGVSSLFTIYPGTGLGGGYIYKGKLVTG 152 Query: 231 SLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLT 290 + ++GH +++ DG +C CGR+GCLE + S LK L + V +DP Sbjct: 153 FNSTAAEVGHVVIDIDGPLCKCGRHGCLEAIVSYHGLKTMLGEKLAAGAV-CHIDPSSFR 211 Query: 291 TAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 + AW+ G+P ++ ++ A A+G+ + N +NI + +I L G Sbjct: 212 ATDIFDAWRKGDPVLSELLEYQARALGIGIANVINITGVERIILGG 257 >UniRef50_C5VDA4 Glucokinase n=3 Tax=Corynebacterium RepID=C5VDA4_9CORY Length = 318 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 72/250 (28%), Positives = 119/250 (47%), Gaps = 17/250 (6%) Query: 134 KLWPDHTIN-LALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVM 192 K DH I + LAI G +DP + + P PW + L+ LG+ V +++D Sbjct: 52 KFRADHCIGAVGLAIAGFLDPDCEIVRFAPHLPWRD-RHARAELQAALGVPVRLEHDANA 110 Query: 193 LALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCD 251 A E +Q D + + + GIG++ + + IYRG+ + + GH V P G C Sbjct: 111 AAWGEYKFGGAQGHDNWVLFALGTGIGATLMQDGNIYRGAFGTAPEFGHIQVVPHGRPCA 170 Query: 252 CGRYGCLETVASLSALKKQARVWLKSQPVSTQL--DPEKLTTAQLIAAWQSGEPWITSWV 309 CG+ GCLE S +AL++ AR L P++T + D +LT ++ A + +P T+ V Sbjct: 171 CGKRGCLERYCSGTALEQTARELLADNPITTSILSDHPELTGKTVMDAARQSDPIATAAV 230 Query: 310 DRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI-------IRQTGFNPFDRDE 362 A +GL+L ++IL+ I + G A + +L I +G+ P Sbjct: 231 TSIAEWLGLALSMVVDILDPGMILIGGGMSADHDVYLPQATEIMAANIVGSGYRPV---- 286 Query: 363 GPSVKATQIG 372 P+V ++G Sbjct: 287 -PTVSTAKLG 295 >UniRef50_Q2RLD7 ROK n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLD7_MOOTA Length = 410 Score = 95.1 bits (235), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 78/364 (21%), Positives = 164/364 (45%), Gaps = 13/364 (3%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N Q ++ N+ IL ++ + ++ LA+L ++ A++ I+++L + V+ Sbjct: 7 NLQLVKKLNRISILNIIRKHNTISRQQLAKLTGLTPAAITGIVRDLVASGYVIEKGLGKS 66 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEI 125 G P+ + L +T S + N P +Y ID PQ LS + Sbjct: 67 NGGRRPVKLQFNPDSGYVLGAEITRNSTTLGMVNLDAKPLILKQY-NIDMTDPQQGLSRL 125 Query: 126 EKCWHR---HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQ--APWTTPVEVKYLLEEKL 180 + + + + + +A G VD T V + P W + ++ L+E Sbjct: 126 ADEVTKMIIESGIESKNILGMGVAYPGLVDISTRVVKRSPNLGKKWRD-IPIENWLQEMT 184 Query: 181 GIRVMVDNDCVMLALAEK-WQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 GI++ V+N+ A+AE + + ++ IN+ GI + ++N + G +G+IG Sbjct: 185 GIKIFVENNSNAAAMAEYCFGRGKETKNMAYINLGEGISAGIILNGMLAYGFRGYTGEIG 244 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQAR----VWLKSQPVSTQ-LDPEKLTTAQL 294 H +++ DG +C+CG GCLE++ ++ AL ++A ++ + P+ L+ ++ + Sbjct: 245 HLVIDEDGPLCNCGNNGCLESLCAVPALVRKANNELSLYNQKDPLKAIWLEKGEVKIEDI 304 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTG 354 +A + + + ++ IG ++ +N+ N I++ G G + L+ +I Sbjct: 305 MANANNVGSYAQKLIRQAGWYIGKAIAAIINVFNPEAIFIGGILAEAGNSLLDPLIESVQ 364 Query: 355 FNPF 358 + F Sbjct: 365 KHAF 368 >UniRef50_A1SS79 ROK family protein n=2 Tax=Psychromonas RepID=A1SS79_PSYIN Length = 408 Score = 94.7 bits (234), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 89/365 (24%), Positives = 170/365 (46%), Gaps = 31/365 (8%) Query: 6 NNQQ----------IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEK 55 NNQQ I+ N I +++ + ++ +A +++++ +V+ I ++L + Sbjct: 4 NNQQADSVIASVDHIKQLNSATIYKVIEKYAPISRVKIANVSKLAPASVTKITRQLLQQG 63 Query: 56 RVVNIDDESQTRGHSSGTWLIAPEGDWTLCLNVT----PTSIEC-QVANACLSPKGEFEY 110 + ++ T G + + +AP D L + S+ C +A L+ K Sbjct: 64 IICETARQASTGGRCAIS--LAPNTDNIHVLAIKIGQKTLSLSCYNLAAEQLTTKK---- 117 Query: 111 LQIDAPTPQALL----SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPW 166 ++I + Q LL SEI+ + +K + +A+++ G ++P GV P P Sbjct: 118 IKIKSEDEQQLLAFLISEIDNFIKKQQKNMGKIS-AIAISLSGLINPKKGVVLYSPYHPL 176 Query: 167 TT-PVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVIN 224 P+ K +E+ + + N LALAE + S+E D +I++ +G+GS +I Sbjct: 177 VNFPLANK--IEQHFQLPTFIGNHTRSLALAEHYFGASKECLDSILISIHHGVGSGIIIE 234 Query: 225 EQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQL 284 + G + G+IGH NP G C CG +GCLET S + ++ + +K Q T+L Sbjct: 235 GKALLGQNFNIGEIGHIQANPAGRQCHCGNFGCLETEVSDRVIVEKVAIAIK-QGSFTRL 293 Query: 285 DPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGEN 344 + L ++ A + +P V+ +A +G ++ +N+LN +I + G+ + Sbjct: 294 SLDSLNIEKIYQAAEDNDPLCQKIVEDAATYLGKAIAILINLLNPQKIIIAGKIIRAKTS 353 Query: 345 WLNTI 349 L+TI Sbjct: 354 LLSTI 358 >UniRef50_C8WRQ2 ROK family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRQ2_ALIAD Length = 399 Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 92/362 (25%), Positives = 158/362 (43%), Gaps = 37/362 (10%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M A ++ +R N+ +L+L+ + ++ ++++ ++ VSNI+ EL +E+ V+ + Sbjct: 1 MHANVDASAMRRMNRATVLKLIRDLRTTSRIDISQMTGLNKATVSNIVDELIAEQLVLEV 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQI------D 114 S + G + + ++V + + V N +GE Y Q+ + Sbjct: 61 GYGSSSGGRKPILLRFNANAAYAIGVDVQLSHMTTVVCNI----RGEPVYRQVRTLGLSE 116 Query: 115 APTPQALLSE-IEKCWHRHRKLWPDHTINL---ALAIHGQVDPVTGVSQTMPQAPWTTPV 170 AP +A+L E IE+ + P L LA G VD G +P + Sbjct: 117 APDVRAVLLEAIEEELRKAIAAAPPSPYGLLGACLAFPGMVDFRRGAVYYLPSL-FVGEW 175 Query: 171 EVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRG 230 E+ L + I + +DND A E + ++ +N+ GIG+ VI ++YRG Sbjct: 176 EILADLGRSVDIPLFLDNDANCGAWNEYMAQAMKLKNLVFVNMGLGIGAGIVIEGKLYRG 235 Query: 231 SLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALK---KQARVWLKSQPVSTQLDPE 287 +G+ GH +NP G C CG YGC E AS L ++A L + + L + Sbjct: 236 RDGIAGEAGHMTINPMGSACMCGGYGCWEEYASERGLMRYLREAGADLSALSLRDSLLEQ 295 Query: 288 KLTTAQ-----LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG---RSC 339 L AQ I A+ S + +GL + N LN+LN +++ L G R+ Sbjct: 296 ALEQAQNDNRACIRAFHSLGQY-----------LGLGIANLLNLLNPDEVILGGSVARAA 344 Query: 340 AF 341 F Sbjct: 345 TF 346 >UniRef50_D2PQN5 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PQN5_9ACTO Length = 402 Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 61/201 (30%), Positives = 95/201 (47%), Gaps = 11/201 (5%) Query: 141 INLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQ 200 I + +A+ G VD GV + P W V + L E+LG V+V ND L +AE W Sbjct: 155 IGIGVAVSGDVDAAHGVVRDSPFMGWRE-VPLAATLTEELGAPVVVTNDVRALTVAEHWF 213 Query: 201 NNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLE 259 + D F V+ + G+G +N ++ G+ SG++GH + P ++C CGR GC+E Sbjct: 214 GVGVDADSFAVVTIGSGVGCGLYLNGEVVSGAYGVSGELGHLPLAPGELICTCGRRGCVE 273 Query: 260 TVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLS 319 TVAS A+ + R T PE L A I +G+ D++ IG + Sbjct: 274 TVASSDAILARTR--------ETTGRPE-LDLAGAIELAHAGDEHAREAFDQAGEVIGSA 324 Query: 320 LYNFLNILNINQIWLYGRSCA 340 L +N++ + + G A Sbjct: 325 LAAMVNLVGPELVVIAGEGVA 345 >UniRef50_UPI0001C35AB4 xylose repressor protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35AB4 Length = 401 Score = 94.0 bits (232), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 77/345 (22%), Positives = 161/345 (46%), Gaps = 23/345 (6%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 ++ + N+ ILE +YR ++ +A +I+ V+ + L SE V + + S Sbjct: 5 KKKKASNRSRILECIYRNAPIARTDIAEETEITPATVTMNVTTLISEGFVRELGEVSTDE 64 Query: 68 GHSSGTWL---IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQID-------APT 117 S + I P+ +++ L T ++ + + KG + + + Sbjct: 65 ASSGRKRVLIDIIPDRAYSIGLEFTQKALVICITDL----KGRIRFQRTEPFNEELAGRI 120 Query: 118 PQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 A++ ++ W D + + A+ G ++ + S + W + +E Sbjct: 121 TDAIIGGVKDLVAESGISW-DEIVGIGAAVPGHMNG-SASSLITNRKTWQNFDPKR--IE 176 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSG 236 ++L + ++ +N+ +AL E + + D F +V G+ + V++ +++ G Y +G Sbjct: 177 QELPLPIVCENNARCMALGEYLFSPQESPDSFAFFHVGMGMFCASVVDGEMFLGENYVAG 236 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQP----VSTQLDPEKLTTA 292 +IGHTIV+ G C+CG+YGCL+T AS + L + AR+ ++ P S D ++T Sbjct: 237 EIGHTIVSEGGRRCECGKYGCLQTYASENHLIRNARLLYRNTPNTILRSLVSDDSQITIE 296 Query: 293 QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGR 337 + A+ G+P I ++ + +G+++ N I N +I+L+G+ Sbjct: 297 TITTAYSMGDPVIGMYIAEALKYLGITISNIAIITNPGKIFLHGQ 341 >UniRef50_A9WVF3 Transcriptional regulator, ROK family n=4 Tax=Micrococcaceae RepID=A9WVF3_RENSM Length = 426 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 67/264 (25%), Positives = 117/264 (44%), Gaps = 7/264 (2%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRA-NKSTLARLAQISIPAVSNILQELESEKRVVNI 60 R N ++ N VIL+ + R ++ LA + ++ VSNI + L + +V Sbjct: 19 RRGTNLPRMGDFNLSVILDAIRRSPEGLSRVELAGIVGLAAQTVSNICRRLLDQNLIVEA 78 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ- 119 G + P G + + +++ P + + + +L PQ Sbjct: 79 GKYGSGPGKPRTILRLNPGGMYAVGVHLDPVETNYALLDLTGAVVTTRTHLTQPDAEPQQ 138 Query: 120 ---ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 A+ EIE + + + L +A G +D TG P P VE++ L Sbjct: 139 TIDAMAEEIESIIS-EQNIERNKIAGLGIAAPGPIDGATGAIVEPPHMPGWGTVELRERL 197 Query: 177 EEKLGIRVMVDNDCVMLALAEKWQNN-SQERDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 + + + V++D D A+AE W S F + + GIGS V+++++ RGS + Sbjct: 198 HKAVELPVLLDKDVTAAAVAEIWAGGLSGSGSFIFVYIGTGIGSGLVLDDEVVRGSSGNA 257 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLE 259 G++GH I +PDG CDCG+ GC++ Sbjct: 258 GEVGHIIADPDGPDCDCGKRGCVK 281 >UniRef50_C3JBE1 Glucokinase n=16 Tax=Bacteria RepID=C3JBE1_9PORP Length = 331 Score = 93.6 bits (231), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 56/189 (29%), Positives = 92/189 (48%), Gaps = 4/189 (2%) Query: 165 PWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVI 223 PW P + LL+E+ + V + ND A+ E+ ++ RDF +I + G+GS V Sbjct: 90 PWKEPFPIVRLLQERTHLPVALINDAKAAAIGERTYGAARGMRDFIIITLGTGVGSGIVA 149 Query: 224 NEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQ 283 N ++ G +G++GH I+ G C CGR GCLET S + + A L+ + Sbjct: 150 NGELIFGHDGLAGELGHFIIRRGGRPCGCGRCGCLETYCSARGMARTAIELLQESTEDSP 209 Query: 284 L---DPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCA 340 L E++T+ + A ++G+P + + +G SL +F+ + I L+G A Sbjct: 210 LRHVKEEEITSKAVYDAAEAGDPIAQKVFEMTGEILGESLADFMTFSSPEAIILFGGVTA 269 Query: 341 FGENWLNTI 349 GE L I Sbjct: 270 AGERLLQPI 278 >UniRef50_A8F6K2 ROK family protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F6K2_THELT Length = 403 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 85/382 (22%), Positives = 177/382 (46%), Gaps = 14/382 (3%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGH 69 ++ HN+ ++L + + +++T+++ +SI +++NI L E ++ + +++G Sbjct: 8 LKDHNEKIVLRTIRQMGEVSRTTISKKTGLSIASITNITSRL-LEANLIKENRYGKSKGG 66 Query: 70 SSGTWL-IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKC 128 L I + W + + V + V + +P E + + ++ + A++ +I Sbjct: 67 RRPVLLGINEKHSWAIGVKVGYLYLYFVVTDLLGTPVLE-QKIPLNTASYNAVVEKIADF 125 Query: 129 WHRHRKLWPDHT----INLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184 + K+ P++ + + +A+ G VD G+ ++ W V + +LEE++ V Sbjct: 126 VNTIVKI-PEYVDRKFLGIGVAVSGSVDSEHGIVKSSYILEWGN-VPIGPVLEERIKAPV 183 Query: 185 MVDNDCVMLALAEKWQNNSQERDFCV-INVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV 243 +V ND A+A +++ C+ I + G+G + ++ ++Y G G+G+IGH V Sbjct: 184 LVYNDVDSFAVAHYTIGRAKKYKNCIFITLGSGVGGAMILGGKLYTGR-GGAGEIGHMTV 242 Query: 244 NPDGVVCDCGRYGCLETVASLSAL--KKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 DG C CG YGCLE S +AL + + + ++S + L E + A Q Sbjct: 243 ICDGKKCSCGSYGCLEAEISFNALVDRIKKKTNIESLKNRSCLTTEDEAIHYIHKALQID 302 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 + D + +G+++ N +NI + + + G + F + +L I N F D Sbjct: 303 REAVIEAFDEISVLLGVAIKNMINIFAPDYVLIGGEALEFRDLFLKKAILIARENSFG-D 361 Query: 362 EGPSVKATQIGFGQLSRAQQVL 383 G V G+++ Q V+ Sbjct: 362 LGDDVVIDIDDMGEVAWVQGVI 383 >UniRef50_UPI0001B57B53 transcriptional regulator n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B57B53 Length = 381 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 66/201 (32%), Positives = 94/201 (46%), Gaps = 12/201 (5%) Query: 137 PDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALA 196 P + L +A G VD G + P V+ L E + V+VDND MLAL Sbjct: 130 PGRALGLGVAFPGPVDVDAGTITLPSRMPGWRGFAVRAALAEHFELPVVVDNDANMLALG 189 Query: 197 EKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV-NPDGVVCDCGRY 255 E + R V+ GIGS V+ ++YRG +G I H V + C CG Sbjct: 190 ESVA-GAPGRTLLVVKAGTGIGSGIVLGGELYRGRAGVAGDISHVRVPAAEDQPCTCGNR 248 Query: 256 GCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANA 315 GCLE VAS +AL Q L++Q + + TTAQ++A + G P T+ V R+ Sbjct: 249 GCLEVVASGAALVGQ----LQAQGLKLE------TTAQVMATAEDGHPEATTAVRRAGLR 298 Query: 316 IGLSLYNFLNILNINQIWLYG 336 +G L +N N +++ L G Sbjct: 299 LGEVLATVVNFSNPDEVLLGG 319 >UniRef50_B9YHG7 ROK family protein n=2 Tax=Nostocaceae RepID=B9YHG7_ANAAZ Length = 345 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 64/221 (28%), Positives = 113/221 (51%), Gaps = 14/221 (6%) Query: 143 LALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNN 202 + ++ G VD TG+ + P + +K LLEE+ + V VDND + A+ E Sbjct: 86 IGVSFGGPVDAATGLVRLSHHVPGWENIPLKQLLEEEYNVPVSVDNDANVAAVGEHRFGA 145 Query: 203 SQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETV 261 Q D I + G+G +++N + ++G+ +G+IGH +V+P G VC CG+ GC+E + Sbjct: 146 GQGYDSLFYITISTGVGGGWILNGKPWQGAGGMAGEIGHIVVDPTGPVCLCGKRGCVERL 205 Query: 262 ASLSALKKQARVWLKSQ----PVSTQLDPEK--------LTTAQLI-AAWQSGEPWITSW 308 AS + + AR L+ + P ST+ + K L T Q++ AA G+ Sbjct: 206 ASGPYMAQNARELLEKEAHNSPTSTRGEILKYLVGNDLDLITGQIVSAAAAHGDELAREV 265 Query: 309 VDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 + ++A A+G+ + N N++N + L G G+++ T+ Sbjct: 266 LYKAAWALGVGIGNVANLMNPQRFVLGGGVTKAGDSFWATV 306 >UniRef50_C7MFT1 Transcriptional regulator/sugar kinase n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MFT1_BRAFD Length = 392 Score = 92.4 bits (228), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 91/366 (24%), Positives = 158/366 (43%), Gaps = 45/366 (12%) Query: 5 INNQQIRHHNKCVILELLYRQKRA-NKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 + + +R HN +L L + +++ LA+L +++ P VS +++EL + V Sbjct: 1 MQSTHLREHNLSTLLSTLASAEAPLSRAGLAKLTRLTKPTVSKLVEELVAAGLVAEGTPV 60 Query: 64 SQTRGH-------SSGTWLIAPEGDWTLCLNVTPTSIEC---QVANACLSPKGEFEYLQI 113 S G + GT L + L V I C + +S + EYL++ Sbjct: 61 SAGAGRPMVPLSPARGTLL-------AIGLEVAADHISCLGIDLTGEAISQR--TEYLRV 111 Query: 114 DAPTPQALLSEIEKCWHRHRKLWPDH----TINLALAIHGQVDPVTGVSQTMPQAPWTTP 169 A + + I+ C ++ D T+ + A+ G++ P G + P WT Sbjct: 112 TAASAE---EAIQHCAALVGRVRADAGSLPTVGVVAAVPGRIAPDDGRVLSAPNLDWTEV 168 Query: 170 VEVKYLLE--EKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQI 227 V LL E G+ V ND + L E + + F + G+G + V++ Q+ Sbjct: 169 PLVGRLLAHPELAGLPVRAQNDNRLSVLTEIDRRPGES--FIYLRGSTGVGGAVVLDGQL 226 Query: 228 YRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPE 287 G+ +G+ GHT+V PDG +C CGR GCLE S +L+++A + + E Sbjct: 227 LDGAHGWAGEFGHTVVVPDGALCRCGRRGCLEAYVSYHSLRERAG-------LGDDVRIE 279 Query: 288 KLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLN 347 L A + + + RS +GL++ N LN+L++ + L G + L Sbjct: 280 DLVDAL---SRHGDRAEVIGMIGRS---LGLAVANALNVLDLATVVLSGYLAPIADE-LE 332 Query: 348 TIIRQT 353 +IR T Sbjct: 333 PVIRGT 338 >UniRef50_UPI0001C31B1F ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31B1F Length = 404 Score = 92.0 bits (227), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 94/388 (24%), Positives = 169/388 (43%), Gaps = 22/388 (5%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVN--IDDESQTR 67 +R N+ ++++ L R +++ LAR +S VS ++ +L+++ V +D Sbjct: 13 LRDRNRRLLVDELRRAGLISRAELARRTGLSRSTVSTLVADLQAQGLVAEREVDGAGPQG 72 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEY-LQIDAPTPQALLSEIE 126 G + L ++ + V++ + + E ++ + P+ + Sbjct: 73 GRPPVLLSLERAAGVALGIDFGKRHVRVIVSDLAHTVLADVERPMETEQSAPEGFEVAVA 132 Query: 127 KCWHRHRKLWPDHT--INLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184 + T I + + G +D TG + P + + + +LG+ V Sbjct: 133 LVHQALADAGVEQTDVIGAGMGVPGPIDISTGEVGSSAILPGWIGLRPREDMSARLGLAV 192 Query: 185 MVDNDCVMLALAE-KWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV 243 V+ND + ALAE W +DF + V GIGS V+ Q+Y G+ +G+IGH++V Sbjct: 193 RVENDANLGALAELTWGAGRDTQDFVYVKVASGIGSGLVLGGQLYTGAGGIAGEIGHSMV 252 Query: 244 NPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEP 303 + G VC CG GCLET+AS +Q R L+ P LT ++IA + G+ Sbjct: 253 DERGAVCRCGNRGCLETIAS----TRQIRELLR--PARGA----DLTIEEVIAHAREGDR 302 Query: 304 WITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEG 363 + +A AIG+ + N+LN ++ + G A G+ L+ + + R Sbjct: 303 ASRRVIGDAARAIGVVVAQVCNVLNPAKVIVGGDLSAAGDVLLDPL-----RDEVSRHAV 357 Query: 364 PSVKA-TQIGFGQLSRAQQVLGIGYLYV 390 P+ +I G L R +VLG L + Sbjct: 358 PAAGGHVEIVPGVLGRRAEVLGAAALVL 385 >UniRef50_C6LGM9 ROK family protein n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LGM9_9FIRM Length = 410 Score = 91.7 bits (226), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 76/340 (22%), Positives = 155/340 (45%), Gaps = 30/340 (8%) Query: 9 QIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEK--RVVNIDDESQT 66 +++ N+ IL ++Y ++ +A ++++P ++ + + S R V+I D+ Q Sbjct: 11 RVKAANQSTILRMIYYMGPVKRAEIAEQLELTLPTITTNVNSMISAGIVREVSIRDDGQA 70 Query: 67 R-GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSP-------KGEFEYLQIDAPTP 118 R G + + PE + + T V + C P +G +Y + T Sbjct: 71 RIGRKAHLLEVVPEAYHFVGIESTGIHRCVSVVDYCGRPLYSHYDEQGCADYRRSMEETC 130 Query: 119 QALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 Q +L ++ C H KL D + + G VD G+ + P+ W+ ++ E Sbjct: 131 QVVLDCLKHC---HLKL--DDISGVCFGLPGWVDREEGILRVHPRNQWSNK-NIREDFRE 184 Query: 179 KLGIR--VMVDNDCVMLALAEKWQNNSQERD---FCVINVDYGIGSSFVINEQIYRGSLY 233 G + V+V+N+ + A+ +++ + + F + VD GI ++N Y GS Sbjct: 185 ITGYKGTVLVENNACVRAIGTQFRRRKEMENVESFTYLLVDTGIACPLIVNRANYIGSAV 244 Query: 234 GSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVST------QLDPE 287 G+G++GH ++ DG C CG GCLE +S A+ ++ ++ S Q P+ Sbjct: 245 GAGEVGHMVMEADGRQCVCGNRGCLEAYSSDYAVIERCAEAIRQGKASKLKELCGQARPQ 304 Query: 288 KLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNIL 327 +Q++ A + G+ +++ V+ + +G ++ N +N + Sbjct: 305 ---MSQIMKAQRQGDRDVSAIVEDAVRVLGTAVANIINFI 341 >UniRef50_A9KIQ9 ROK family protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KIQ9_CLOPH Length = 299 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 64/247 (25%), Positives = 111/247 (44%), Gaps = 22/247 (8%) Query: 143 LALAIHGQVDPVTG-VSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEK-WQ 200 + ++ GQVD + G + P T +E+K +LE+K + V V+ND A+ E + Sbjct: 60 IGISTAGQVDSINGTIVYANDNIPNYTGMELKKILEDKFKVPVSVENDVNAAAIGEAIYG 119 Query: 201 NNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLET 260 E DF + GIG + +N+++Y+G+ + ++GH +++P G+ C CG +GC E Sbjct: 120 AGKGENDFLCLTYGTGIGGAIFLNQKLYKGAQGVAAEMGHMMIHPGGLPCGCGSFGCYEQ 179 Query: 261 VASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSL 320 AS +AL + A+ PE + +A+ +D+ I L Sbjct: 180 YASTTALIRTAKAH----------SPEFYNGKAIFSAFDHDSKDAKRLIDQWVKEISYGL 229 Query: 321 YNFLNILNINQIWLYG--RSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSR 378 N + I N + I L G + + N LN II+++ PS ++ L Sbjct: 230 VNLIYIFNPSLIVLGGGIMTQPYIINKLNQIIKESTM--------PSFHGVRVTLASLGN 281 Query: 379 AQQVLGI 385 V G+ Sbjct: 282 LAGVYGM 288 >UniRef50_A6LW15 ROK family protein n=5 Tax=Clostridium RepID=A6LW15_CLOB8 Length = 382 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 69/271 (25%), Positives = 125/271 (46%), Gaps = 16/271 (5%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 +N+ +I+ N+ I+ LL ++ K ++R+ ISI VS + EL+SE V ++ Sbjct: 4 VNHSKIKETNRKKIIALLLKKNEITKLDISRILDISITTVSTNITELKSEGIVEDVRSLE 63 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA---- 120 T G + + +++ + +TP I+ + N K E +++ + Sbjct: 64 STGGRKAIAIKLNENCRYSIGVALTPNHIKISLVNI---KKKVIESMRVRHNSDGIENII 120 Query: 121 -LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGV---SQTMPQAPWTTPVEVKYLL 176 LL+E + L + + + +++ G VD G+ S + + + +YL Sbjct: 121 NLLNENIDLLMKKYNLCSANLLGIGISLPGTVDFKEGIIKYSYLLGAKDFNLKEKFEYL- 179 Query: 177 EEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 I V VDN+ + A E R+ +++ G+G +IN +IYRG SG Sbjct: 180 ----DIPVYVDNEANLSAYYEFLNKRDILRNLLYVSITEGLGLGIIINGKIYRGDNNSSG 235 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSAL 267 ++GHT + DG C CG GCLE S+++L Sbjct: 236 ELGHTKIAIDGKKCKCGARGCLEAYTSMNSL 266 >UniRef50_C9LAU2 Transcriptional repressor of the xylose operon n=1 Tax=Blautia hansenii DSM 20583 RepID=C9LAU2_RUMHA Length = 399 Score = 91.3 bits (225), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 75/312 (24%), Positives = 139/312 (44%), Gaps = 27/312 (8%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N + IR++N+ ++LE + +++ LA+ ++ +SNI+QEL + + I Sbjct: 19 NQEMIRNNNRRLVLEFIINNPPVSRAELAKQLSLTKATISNIVQELLEQNFIREIGSAQT 78 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ-ALLSE 124 + G + L L + P I + N KGE + ++ PQ LL Sbjct: 79 SMGRKPILLEFNKAYGFALSLEIQPQQIIALLTNL----KGEVQEIKKIPFCPQDNLLQH 134 Query: 125 IEKC---WHRHRKLWPDHTINLALAIHGQV---DPVTGVSQTMPQAPWTTPVEVKYLLEE 178 +E+ + R + + I +++ I+G V + + +P++ T L+E Sbjct: 135 LEQILNFYIRENTAFKNKIIGVSIGIYGVVQKNEILFTPYYPLPKSGLGTH------LQE 188 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 I V V+N+ + L E ++ + ++ INV GIG ++N ++Y+G +G+ Sbjct: 189 TFQIPVFVENEANLSVLGEAAFHH-KYKNMIHINVHDGIGMGILVNGRLYKGRDGYAGEF 247 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GHTI+ PDG C CG GC E AS A+ + K E +T ++ + + Sbjct: 248 GHTILFPDGKPCPCGNQGCFELYASQRAILENYAARQKK---------ENVTISEFLKDY 298 Query: 299 QSGEPWITSWVD 310 + P +D Sbjct: 299 DANLPLAHEMMD 310 >UniRef50_Q2RK90 Glucokinase n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RK90_MOOTA Length = 315 Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 61/210 (29%), Positives = 103/210 (49%), Gaps = 4/210 (1%) Query: 142 NLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQN 201 + + I G VD G+ P W ++ L L + V ++ND + AL E WQ Sbjct: 65 GIGIGIPGSVDVARGLVHLAPNLFWRD-FSLRDELAALLDLPVAIENDAHVAALGEMWQG 123 Query: 202 NSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSG-QIGHTIVNPDGVVCDCGRYGCLE 259 + ++ + GIGS +I+ +++ G L+G G ++GH + DG C CG +GCLE Sbjct: 124 AGRGYTSLLMVTIGTGIGSGLIIDGRVHHG-LFGYGAEMGHIKMVCDGRQCHCGGHGCLE 182 Query: 260 TVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLS 319 T+AS +A+ K R +L + S D +L +++AA G+ +D +A +G + Sbjct: 183 TLASATAMVKSFREYLAAGYPSMLSDRPELGAKEILAAAAGGDELAGRVIDEAACYLGTA 242 Query: 320 LYNFLNILNINQIWLYGRSCAFGENWLNTI 349 L N + ++ I + G GE L+ I Sbjct: 243 LANAVLLVGPEAIIIGGGPAQAGEVILDPI 272 >UniRef50_Q1GMG9 ROK domain protein n=6 Tax=Rhodobacteraceae RepID=Q1GMG9_SILST Length = 435 Score = 90.9 bits (224), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 52/170 (30%), Positives = 89/170 (52%), Gaps = 9/170 (5%) Query: 184 VMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 V +DND ++A AE + D F VI +++G+G VI++QIYRG+ ++GHT Sbjct: 224 VFLDNDANLVAKAEHLFGEGRTCDNFIVITIEHGVGMGIVIDQQIYRGTRGCGAELGHTK 283 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 V+ +G +C CG+ GCLE AL ++A + S+ T A L + ++G+ Sbjct: 284 VHLEGALCQCGQRGCLEAYVGDYALLREANISSGSE--------RHTTIASLFQSAENGD 335 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQ 352 S +DR+ + L N +NI + ++I L G +F + + +I + Sbjct: 336 VVAKSILDRARRMFAMGLANVVNIFDPSKIILAGARLSFDYLYSDKLIEE 385 >UniRef50_C4ZGB0 Putative NAGC-like transcriptional regulator n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZGB0_EUBR3 Length = 412 Score = 90.5 bits (223), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 84/374 (22%), Positives = 172/374 (45%), Gaps = 32/374 (8%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 ++ I+ ++++NK IL++L + ++ +A ++ AV+ + ++ ++ Sbjct: 2 VKTGISLDSVKNNNKSQILKILQKNGAMSRKDIANQIGLTPAAVTMLCNDMMEAHMILEK 61 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFE---YLQIDAPT 117 + + + L+ D+ ++V +++ + + E + + D Sbjct: 62 GEMKEQKRAGRKKVLVDINYDFKYIVSVNIEAVDTSITVTNIRGNVLVETKVHTRTDIE- 120 Query: 118 PQALLSEIEK-----CWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEV 172 PQ L E+ K W + KL + + + + G VD G+S W V++ Sbjct: 121 PQLFLEELAKEIKLQLWEKELKL--SDILGIGICVPGIVDRNNGIS-IHAYGIWNNQVKI 177 Query: 173 KYLLEEKLGIRVMVDNDCVMLALAE------KWQNNSQERDFCVINVDYGIGSSFVINEQ 226 + +LE+++ V+++N+ A AE K+ NN I G+GS+ V++ + Sbjct: 178 REILEKQIQCPVILENNVKAFAEAEMLYGVGKYGNN-----IVFIKWGPGVGSAIVVDNK 232 Query: 227 IYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSAL-KKQARVWLK-SQPV--ST 282 +Y G+ + + +IGH I+ PDG+ C CGR GCLET S+ AL + ++ K + PV Sbjct: 233 LYEGNQHNAAEIGHYIIEPDGLKCRCGRQGCLETRVSMFALCDRIKEIYSKENTPVLYEE 292 Query: 283 QLDPEKLTTAQLIAAW--QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSC- 339 + L T +L+ +W G +IT +D++ + I + + + +N + + C Sbjct: 293 TAGDKNLITRELLTSWVENEGNGYITR-MDKTISEILVGAIERMARVAVNVLTILAPDCT 351 Query: 340 -AFGENWLNTIIRQ 352 FG + NT I + Sbjct: 352 IVFGSMFENTSIYK 365 >UniRef50_C6B504 ROK family protein n=1 Tax=Rhizobium leguminosarum bv. trifolii WSM1325 RepID=C6B504_RHILS Length = 424 Score = 90.5 bits (223), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 78/340 (22%), Positives = 150/340 (44%), Gaps = 20/340 (5%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVN--IDD 62 I+ + N+ +L+ LY ++++ LAR+ ++ + I+Q L + + + Sbjct: 39 ISTGTLGAANRGRLLQALYDIGASSRADLARVTGVTRGTIGGIVQPLLDQGVLAEGEVIP 98 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFE-----YLQIDAPT 117 ++T G + T L + +C + + +V+ +S +GE Y + Sbjct: 99 PNETGGKPA-TKLWFSKDARPICAVLL---LHDRVSACLVSLEGEVYAQNVVYFPKNVAN 154 Query: 118 PQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 I C + + + + +A+ G ++ TG T+ AP+ ++ L Sbjct: 155 AADAFRIISTCIEKAVA-FGKPILGIGVAVAGMINTETGTIVTVGLAPFLDGFPLETELN 213 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 ++ G+ V VD D L + ++W + R+F + + +G + ++ +YRG G Sbjct: 214 KRFGVTVCVDQDTRALLVGDRWFGQGRGRRNFASVYIGETLGGALYLDAHLYRGPAGAGG 273 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 +IGHT V+ G +C CGR GC ET+AS L+ +A+V +P+S LD +L+T Sbjct: 274 EIGHTTVDIKGRMCQCGRRGCWETIASSKWLRTEAKVRRLPRPLS--LDVSRLSTLA--- 328 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 P + A I + L N + N I ++G Sbjct: 329 --DKDVPGARDLIRDYAFNIAVGLANLQQFMAPNFIVIHG 366 >UniRef50_UPI00017885B4 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017885B4 Length = 403 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 90/392 (22%), Positives = 170/392 (43%), Gaps = 25/392 (6%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N++ I+ N+ +L + + ++ LA+ ++S V++ +QEL E V I S Sbjct: 8 NHKLIQALNRSKVLNKIRTEGPISRIELAKKNKLSPSTVASAVQELIREGYVSEIGTGSS 67 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPT-------SIECQVANACLSPKGEFEYLQIDAPTP 118 + G P+ + L +++T + ++E +V P LQ +A Sbjct: 68 SGGRKPILLKFNPDNHFLLAVSITNSVMILARMNLEAKVFAKETHP---IAGLQGEA-VI 123 Query: 119 QALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 + LL ++ L + + +++ + G V GV + T V +K + E+ Sbjct: 124 ERLLQLMDDFMAGQEDL--ERCVGISINVPGIVSDSHGVVHYNTKLRMTN-VPLKRIFED 180 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 + G+R V+ND + LAE+ + + I++ G+GS +IN+ + RG G+G+ Sbjct: 181 RYGMRTWVENDMNSVVLAERRFGDYAFANLIYISIGDGLGSGILINDHLLRGKHGGAGEF 240 Query: 239 GHTIVNPDGVVCDCGRYGCLETVAS-LSALKKQARVWLKSQPVSTQL----DPEKLTTAQ 293 GHT VN G+ C+CG GCL++ S ++ + +P Q D K+ + Sbjct: 241 GHTSVNRSGIRCECGNAGCLDSYISWIAVYSRIITAIATGRPTMIQELSGGDYSKIVPSV 300 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT 353 A + G+ + A +G ++ N +N+ N + L G A G L ++ Sbjct: 301 FKEALRKGDKLARDLNEEVAEHLGAAIVNLVNMFNPEALIL-GGDLAHGNPELLDMVSVY 359 Query: 354 GFNPFDRDEGPSVKATQI-GFGQLSRAQQVLG 384 DR P +K + G L +++G Sbjct: 360 ----IDRHAMPILKDDMVFGLASLGEEDKLMG 387 >UniRef50_C7QZA5 ROK family protein n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7QZA5_JONDD Length = 425 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 89/394 (22%), Positives = 167/394 (42%), Gaps = 20/394 (5%) Query: 14 NKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGT 73 + V+L+ + ++ +A++ ++ VS ++++L V+ I T G Sbjct: 13 STSVVLDAIRAAGTISRVGIAQVTGLTGATVSTVVRKLLDAHLVIEIGRAESTGGKPRVL 72 Query: 74 WLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIE---KCWH 130 + P + + +++ +I V N +P +P ++ + Sbjct: 73 LELNPTARYAVGVHLDHGAITYAVTNLAGAPVARLARPGPGNASPADVVIRMADEINMLV 132 Query: 131 RHRKLWPDHTINLALAIHGQVDPVTGVSQTMP-QAPWTT-PVEVKYLLEEKLGIRVMVDN 188 + D + L L G + G+ T P W P++ + L + + V+++N Sbjct: 133 ESIGIARDKLLGLGLVSPGPLSSRAGMHLTPPFMRSWEDFPLDTQ--LADVAQLPVLLEN 190 Query: 189 DCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDG 247 D A+ E W +Q E F + + G+G+ VIN YRG+ +G+IGHT N DG Sbjct: 191 DATAAAIGEYWSGGTQREESFAALYLGTGLGAGIVINGTAYRGTSGNAGEIGHTCANIDG 250 Query: 248 VVCDCGRYGCLETVASLSALKKQA----RVWLKSQPVSTQLDPEKLTT--AQLIAAWQSG 301 C CG GC E +A +A+ +A R+ + + + T D +T A + A + G Sbjct: 251 PECWCGARGCFEALAGPAAVVNEAYSDPRI-VTAAALDTLGDHTPITQRFAAIARASRMG 309 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT-GFNPFDR 360 + ++RSA +G++ + N+L++ + L G S A + IR T + F R Sbjct: 310 DTPSRQLLERSARYVGVAAQSVANLLDVRMLVLTGSSFAAASHIYVPAIRDTLAASFFAR 369 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 D A + Q + +G L ++AQ Sbjct: 370 DN----HAVHVQLSQSAETAPAIGAAALVLQAQF 399 >UniRef50_C0CHG9 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CHG9_9FIRM Length = 322 Score = 90.1 bits (222), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 61/231 (26%), Positives = 109/231 (47%), Gaps = 10/231 (4%) Query: 140 TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKW 199 + + + G +D G+ P W V+ L + + V +DND + ALAE+ Sbjct: 67 VLGIGVGCPGPLDSRKGIIIHAPLMRWKNFPLVERLSHD-FQLPVALDNDGNLGALAEQR 125 Query: 200 QNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCL 258 ++ D + V G G VIN +IY G G+G++GH ++P+G+ C CG GC Sbjct: 126 CGVAKGLDNVMYMTVSTGCGGGLVINGEIYHGKHDGAGEVGHMSIDPEGLDCPCGGKGCF 185 Query: 259 ETVASLSALKKQARVWLKSQPVS-----TQLDPEKLTTAQLIAAWQSGEPWITSWVDRSA 313 E AS +A+ ++ R + + S Q DP+K+ L A + G+ + ++ + A Sbjct: 186 ELYASGTAMNRRMREDMAAGKKSMVFELAQHDPKKIEGRLLTEAAEKGDTYALAFFKQQA 245 Query: 314 NAIGLSLYNFLNILNINQIWLYG---RSCAFGENWLNTIIRQTGFNPFDRD 361 +G+ + N N+ + + L G ++ AF + + +IR P + D Sbjct: 246 YYLGVGISNLFNLYDPEVLVLGGGVTKAKAFYHDEMMRVIRSRCLQPVEDD 296 >UniRef50_Q0SHP3 Glucokinase n=22 Tax=Actinomycetales RepID=Q0SHP3_RHOSR Length = 337 Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/265 (27%), Positives = 129/265 (48%), Gaps = 19/265 (7%) Query: 83 TLCLNVTPTSIECQVANACLSPKGE-FEYLQIDAPTPQALLSEIEKCWHRH-RKLWPDHT 140 T+ ++V TSI V ++ GE + LQ +PTP A +E R R+L H Sbjct: 22 TIGIDVGGTSIRASVVDSA----GEVLDSLQ--SPTP-ASAKALENGLDRAVRELSARHD 74 Query: 141 IN-LALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAE-K 198 + + LA+ G + P + P PW V L ++LG+ V++++D A AE + Sbjct: 75 VAAVGLAVAGFITPDRTTVRFAPHLPWVG-APVGRDLGQRLGLPVILEHDVNAAAWAEHR 133 Query: 199 WQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCL 258 + + R+ ++ + GIG++ + + ++YRGS + ++GH V PDG C CG++GC Sbjct: 134 FGAAAGGRNVVMLAIGTGIGAALLADGRLYRGSHGVAPELGHIQVVPDGRPCACGKHGCW 193 Query: 259 ETVASLSALKKQARVWLKSQPVST-------QLDPEKLTTAQLIAAWQSGEPWITSWVDR 311 E S +AL A L + P ++ +DP LT ++ A Q G+P + Sbjct: 194 ERYCSGTALVDTAIELLAADPATSTVLARDVAVDPGALTGRRIAGAAQDGDPLALETMRE 253 Query: 312 SANAIGLSLYNFLNILNINQIWLYG 336 A +G+ L ++ + + + + G Sbjct: 254 FARWLGVGLALIGDVYDPDLVVIAG 278 >UniRef50_C2FZL1 ROK family transcriptional repressor protein n=6 Tax=Sphingobacterium spiritivorum RepID=C2FZL1_9SPHI Length = 403 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 85/337 (25%), Positives = 159/337 (47%), Gaps = 18/337 (5%) Query: 33 LARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIAPEGD---WTLCLNVT 89 L+ L SIP++S I+ EL +K ++ T G + + + + + T+ ++ Sbjct: 29 LSGLTNKSIPSISKIVNELLEDKLLIEDGLAPSTGGRRAIHYALNAKLNCYILTVAIDQH 88 Query: 90 PTS-IECQVANACLSPKGEFEYLQIDAPTP--QALLSEIEKCWHRHRKLWPDHTINLALA 146 TS I + N ++P E +D P ++S I + +H L D+ + + ++ Sbjct: 89 YTSVIVYDLHNKEVTPVHTIEN-HLDHPEEAFSNIVSLINELLTKHH-LSADNILGIGVS 146 Query: 147 IHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQER 206 + G VD V+G + + +K E I ++ND +A+AE+ ++E Sbjct: 147 MPGFVDNVSGTNGSFKDFQL---FNIKKEFERVFAIPTFIENDSTAIAIAEQNFGKAKEI 203 Query: 207 DFC-VINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLS 265 +INV +G+G +++ +++RG +G+ H ++ +C CG+ GCLE ASLS Sbjct: 204 SHALIINVGWGVGLGIIVDNKLFRGFSGYAGEFSHIPLSKSKKMCSCGKTGCLEVEASLS 263 Query: 266 A--LKKQARVWLKSQPVSTQLDPE-KLTTAQ-LIAAWQSGEPWITSWVDRSANAIGLSLY 321 A + R+ + V D + +L AQ LI A G+ S +++SA +G + Sbjct: 264 AAVAHLEERLATGEKSVIQYEDSQNQLQKAQLLINAALGGDQLAISALNKSAYMLGKGIA 323 Query: 322 NFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 ++I+N +I + GR G+ + I QT + F Sbjct: 324 TLIHIMNPQKIIISGRGAEAGKILMPQI--QTAIHEF 358 >UniRef50_Q1IZX8 ROK domain protein n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1IZX8_DEIGD Length = 408 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 78/284 (27%), Positives = 127/284 (44%), Gaps = 13/284 (4%) Query: 120 ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 ALL E+ + + + + + G VD TG P P V LE Sbjct: 103 ALLKELAQAVLEEAGVPRERVAAVGAGVPGPVDYATGCVVQPPNMPGWDGENVMAGLERV 162 Query: 180 LGIRVMVDNDCVMLALAE-KWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 L + VDND + ALAE ++ + D + V GIG+ ++ +++RG G+G+I Sbjct: 163 LDLPTRVDNDANLGALAESRFGVHRGAADLIYVKVATGIGAGVLLGGRLHRGVRGGAGEI 222 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH +N G V G G LE+ A+ L + AR ST DP LT A LI A+ Sbjct: 223 GHISINEQGPVGRSGNPGSLESYAAAQVLLETARARRAGGVPSTLPDP--LTLADLI-AF 279 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 + +P + + + +G+++ LN+ N + + + GR GE +L+ +R++ + Sbjct: 280 ANTDPLARAVWAEAGHHLGVAISTALNLFNPSAVVIGGRLAQAGEVFLHA-VRESALSRT 338 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIG-----YLYVEAQLRQI 397 R + +I L VLG G +L+ A LR + Sbjct: 339 MRI---NADRARIDLSTLGEGAGVLGAGAMLLDHLFTPAGLRHL 379 >UniRef50_D1BYG8 ROK family protein n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BYG8_XYLCX Length = 403 Score = 89.7 bits (221), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 59/192 (30%), Positives = 96/192 (50%), Gaps = 16/192 (8%) Query: 145 LAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQ 204 LA+ G VD TG+ Q P W+T V L + L + V N+ + LAE + S Sbjct: 167 LALPGLVDARTGLLQVAPNLGWSTLDPVPLLGLDDLPVEVA--NEAKLAGLAELTGDVSS 224 Query: 205 ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASL 264 F ++ D GIG++ V++ Q++ G +G+IGH ++P G C CG GCLE A Sbjct: 225 S--FLYVSADVGIGAAIVVDRQLFLGERGWNGEIGHVRIDPAGPRCGCGSIGCLEQYAGK 282 Query: 265 SALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFL 324 A+ + A L P+ A L+ A ++ P + + R+ A+G +L +F+ Sbjct: 283 EAVNRAA-----------GLAPDSPVEA-LVRALEARSPDAEAALHRAGTALGTALADFV 330 Query: 325 NILNINQIWLYG 336 N++++ I L G Sbjct: 331 NLVDVGTIVLGG 342 >UniRef50_D1BD00 Transcriptional regulator/sugar kinase n=4 Tax=Actinomycetales RepID=D1BD00_SANKS Length = 395 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 86/342 (25%), Positives = 142/342 (41%), Gaps = 27/342 (7%) Query: 20 ELLYRQKRANKSTLARLAQISIPAVSNILQELE---SEKRVVNIDDESQTRGHSSGTWLI 76 +L + T A LA ++ A S I ++ + V + S T G T+ Sbjct: 18 DLFQLLRDGQPRTRAELAAVTGQARSTIAARIDLLMASGLVAPAGEASSTGGRPPATFAF 77 Query: 77 APEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEI-----EKCWHR 131 +P L +++ T V + + E E A P +L + E Sbjct: 78 SPAARVVLAVDLGATHAHLAVTDLASTVLAELEAPIAIADGPDVILGWVAQTGEELVLST 137 Query: 132 HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCV 191 R L D +++ + + G V+ TG P P V+V L +LG V+VDND Sbjct: 138 GRTL--DDLVSVGVGLPGPVEHSTGRPINPPIMPAWDDVDVPGGLSARLGASVLVDNDVN 195 Query: 192 MLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDG-VVC 250 ++AL E D + V GIG+ + + + RG+ +G IGH V+ V C Sbjct: 196 IMALGEHRTEWPGVSDLLFVKVATGIGAGIISDGALRRGAQGAAGDIGHVAVSDRSEVPC 255 Query: 251 DCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKL---TTAQLIAAWQSGEPWITS 307 CG GCLE VAS Q V+ QL L ++ ++A ++G+ + + Sbjct: 256 RCGNLGCLEAVAS-------------GQAVAAQLAATGLAATSSNDVVALVRAGDLYASR 302 Query: 308 WVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 V ++ IG L +++LN + I + G + GE+ + I Sbjct: 303 AVRQAGRDIGTVLAGCVSLLNPSMIVVGGVVASSGEHLIAGI 344 >UniRef50_B5XVY7 ROK family protein n=6 Tax=Proteobacteria RepID=B5XVY7_KLEP3 Length = 402 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 66/272 (24%), Positives = 125/272 (45%), Gaps = 18/272 (6%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE-S 64 N + R HN+ VI+E + ++ LARL ++ VSNI+ E+E + + + Sbjct: 7 NLEHARVHNRRVIIEAVRLHGELTRAELARLTALTPQTVSNIVAEMEQMDLLTSHQPRRA 66 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEY---LQIDAPTPQAL 121 RG + + P W++ +++ ++ + + GE + + + P P A Sbjct: 67 SGRGQPAVPVSLNPASAWSIGIHLDHQTLIVVLVDLA----GEVHFRRLILVQKPQPGAT 122 Query: 122 LSEIEKCWHRHRKL----WPDHTINLALAIHGQVDPVTGVSQTMPQA--PWTTPVEVKYL 175 + + + R L W + + + + G V G+S T P W V+V Sbjct: 123 FARLAEVLDEIRALPTLDW-SRVLGMGVVMPGPFG-VEGISSTGPTTLNGWEG-VDVAAE 179 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYG 234 L G+ V ++ND + A+ E++ +++ + F + + G+G+ + +Y G + Sbjct: 180 LGRLSGLPVTLENDATVAAIGERFHGVARQLNSFVYLYIGTGLGAGIFTDGHVYTGHAHN 239 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSA 266 +G++GH +V P+G C CG GCLE SL A Sbjct: 240 AGEVGHIVVAPNGRPCYCGNEGCLERYVSLQA 271 >UniRef50_B8E382 ROK family protein n=2 Tax=Dictyoglomus RepID=B8E382_DICTD Length = 400 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 88/399 (22%), Positives = 175/399 (43%), Gaps = 36/399 (9%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 +N + +R N ++L+ + R ++ ++++ ++S AVS+I++ L + V I E+ Sbjct: 4 VNIKSMRMTNVSLVLDTIRRMGPISRYDISKITKLSPSAVSSIVENLIN----VGIVKET 59 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVT---PTSIECQ---VANACLSPKGEF---EYLQIDA 115 + G I L LN T P IE + + ++ G+ + + ++ Sbjct: 60 PAKVTKVGRRPIE------LTLNETGYYPIGIEIEKDKITGILMALSGKILKSKVINLNT 113 Query: 116 PTPQALLSEIEKCWHRHRKLWPD----HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVE 171 +L + + R L D I + +A+ G ++ GV P W Sbjct: 114 TDVNEVLGSVVNVY---RSLIEDVNKEEIIGVGVAVPGTINRKEGVCIFSPNLGWRNINI 170 Query: 172 VKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCV-INVDYGIGSSFVINEQIYRG 230 +YL + + +++ + E W +D + + V G+ + FV++ ++YRG Sbjct: 171 KEYLGQYIKDYPLFIEHIIKAVTYGEMWYGAGIGKDNIICVRVGSGVSAGFVLDGKLYRG 230 Query: 231 SLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLT 290 +G+ GHT++ +G C CG YGCLET S L ++ ++ T+++ E T Sbjct: 231 PNDRAGEFGHTVIERNGKKCKCGSYGCLETYVSTQVLYEKVFEGIQKN-AYTKVNIENKT 289 Query: 291 T----AQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWL 346 ++I A +SG+ +I + + +G+ + N +N+ N I + G GE L Sbjct: 290 KDEILDEIIEAGKSGDRFILNIFEEMGTYLGIGIANLINLFNPEIIIIAGGLSKAGELLL 349 Query: 347 NTIIRQTGFNPFDRDEGPSVKATQIG--FGQLSRAQQVL 383 + R + F P + T++G G + A +V+ Sbjct: 350 EPVRRIVNLHAFPPI--PEIMVTKLGALTGPIGAASEVI 386 >UniRef50_C0W5B1 Transcriptional regulator/sugar kinase n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W5B1_9ACTO Length = 408 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 83/336 (24%), Positives = 140/336 (41%), Gaps = 26/336 (7%) Query: 22 LYRQKRA-NKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIAPEG 80 L R RA + LA +S +S ++ +V T G + TW E Sbjct: 18 LVRTSRALTRQELASRTGMSRNTISTLIASAIETGLLVPDGSAPSTGGRAPQTWRFHHEA 77 Query: 81 DWTLCLNVTPTSIECQVANACLSP-----------KGEFEYLQIDAPTPQALLSEIEKCW 129 + V +++ V + +G E L A + + ++ Sbjct: 78 GLIMVAGVHSSALHLAVTDLAGHALCQRMVDWPIMRGPEETLDEVARQMREMAENVQASS 137 Query: 130 HRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDND 189 R ++W +++ G +D TG P P +V+ L+ +LG+ V VDND Sbjct: 138 SRPLEVW-----GAGVSLPGPIDQSTGRPTAPPIMPGWDRFDVRGHLDNRLGVPVAVDND 192 Query: 190 CVMLALAEKWQNNSQE----RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT-IVN 244 + L Q RD + + GIG+ + ++RG+ +G IGH + + Sbjct: 193 VNTMLLGYATTLPDQRLRCPRDILYLQIGTGIGAGIMSAGHVHRGADGAAGDIGHVRVTD 252 Query: 245 PDGVVCDCGRYGCLETVASLSALKKQARVWLK---SQPVSTQL-DPEKLTTAQLIAAWQS 300 D VVC CGR GCLE VA +L + AR S ++T+L D LT +++ + Sbjct: 253 ADSVVCRCGRTGCLEAVAGGWSLLRDARRAAAEGLSPHLATRLEDTGTLTLEDIVSGVLA 312 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 G+ + + RSA A+G +L ++ N +Q+ L G Sbjct: 313 GDTECLTLMVRSATAVGDALAMLVSFFNPSQVILAG 348 >UniRef50_C6B6F2 ROK family protein n=8 Tax=Rhizobium RepID=C6B6F2_RHILS Length = 400 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 76/344 (22%), Positives = 160/344 (46%), Gaps = 24/344 (6%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N +Q + HN+ V++E + +++ +AR+ ++ VSNI++ELE +V + Sbjct: 8 NLEQAKSHNRRVVIEAVRTNGPLSRAAIARMTALTAQTVSNIVEELERSHLLVPSQAQKL 67 Query: 66 TRGHSSGTWLIAPEGDWTLCLNV---TPTSIECQVANA-CLSPKGEFEYL--QIDAPTPQ 119 RG + I P G +++ L + + + ++ A C + E+ Q P Q Sbjct: 68 ARGQPIIPYSINPRGAYSIGLELGRQRASGVLTDLSGAVCARIERHVEHPDPQRAMPALQ 127 Query: 120 ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 A++ ++++ + R + + + +A+ G+ S + P V++ LE++ Sbjct: 128 AIVEDLQEAFAFDR----NRLLGVGMALPGRYADGGTTSLSPLNLPGWQDFPVRHELEQR 183 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQERD---FCVINVDYGIGSSFVINEQIYRGSLYGSG 236 + + V+V+ND A+ E+ ++ + + GIG+ ++ +Y+GS +G Sbjct: 184 IKVPVLVENDATAAAIGERLHGVARGLGSFVYLFLAGGGGIGAGMFLDGHLYKGSRNNAG 243 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 +IGH IV P G +C CG+ GCL+ S + + + + E+L++ L A Sbjct: 244 EIGHIIVEPHGKLCSCGKRGCLDRYVSPAVAYEFMGIA----------NAEELSSDDLDA 293 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCA 340 G + W+D++ + ++ +FL + Q + G S + Sbjct: 294 LIAKGGEGLDVWLDQAVQPLRQTV-DFLELAFDPQTIVLGGSIS 336 >UniRef50_Q11DN8 ROK domain containing protein n=3 Tax=Phyllobacteriaceae RepID=Q11DN8_MESSB Length = 442 Score = 89.0 bits (219), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 81/351 (23%), Positives = 153/351 (43%), Gaps = 24/351 (6%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 A I + ++R N+ +++ + + + +++ +A+L +S +S I L +E + ++ Sbjct: 24 AGIRHDEMRKRNRALVIAAVRQSDQPSRTEIAKLTGLSHSTISTISAGLIAEGTMREVEQ 83 Query: 63 ESQT----RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEF-----EYLQI 113 + T RG + P+ CL ++ S+ +A+ +G+ L Sbjct: 84 DGDTAPTRRGRPQVALSLNPDAASVACLYLSFNSLSVVLADY----RGDVINQRTHRLDT 139 Query: 114 DAPTPQALLSEIEKCWHRHRKLWPDHT--INLALAIHGQVDPVTGVSQTMPQAPWTTPVE 171 A + Q LL E + L D + ++ A+ G D P P + + Sbjct: 140 LAMSRQDLL---EATIAALQDLTRDRGEFLRISCAVQGITDSAGRELLWSPITPLSH-LP 195 Query: 172 VKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRG 230 V LE+ G+ V ND M+A A +W N + D F I + +GIG ++N +++ G Sbjct: 196 VGAALEDAFGVPTTVQNDSNMMAEALRWLNPKRYSDNFIAILLSHGIGMGLMLNGKMFSG 255 Query: 231 SLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSAL-KKQARVWLKSQPVSTQLDPEKL 289 + +G+ GH I P G +C CGR GC+E A A+ ++ + + +PV+ D E Sbjct: 256 TRSSAGEFGHMIHKPGGALCRCGRMGCIEAYAGNYAIWRRASGRSPEERPVA---DIEAG 312 Query: 290 TTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCA 340 +L + E + AIG L N +++ + + G+ A Sbjct: 313 EMEKLAQRARCEEGPARQAFREAGRAIGFGLGNLFALIDPAPVAIIGQGTA 363 >UniRef50_C6CXN7 ROK family protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXN7_PAESJ Length = 387 Score = 88.6 bits (218), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 76/326 (23%), Positives = 148/326 (45%), Gaps = 23/326 (7%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGH 69 I+ N+ +IL+ + ++ +++ ++++ ++ VS + +L E+ V+ + E G Sbjct: 9 IKKMNRSLILKEILKEGMLSRADVSKVTALTRATVSGQVADLLDEELVIETEIEYNQVGR 68 Query: 70 SSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEF---EYLQIDAPTPQALLSEIE 126 I E + + +++ I +++ KG + +++ + +LS + Sbjct: 69 KPIMLSINAEAGYAIGIDLEYDQISFAISDL----KGSLVLTDTIKLQSHAYADILSLLT 124 Query: 127 -KCWHRHRKLWPDH--TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIR 183 + H + I + +AIHG V V +P W V +K LE LG++ Sbjct: 125 GQIKHYQERFAASRYGIIGIVIAIHGLV-STDEVIHYIPSFGWHD-VPLKSDLENALGLQ 182 Query: 184 VMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV 243 V ++N+ + A AE+ + + D + + GIG +IN +RG +G+IGH IV Sbjct: 183 VKLENNANLSAFAERVFFHHETDDLISVTLYSGIGMGMMINHSFFRGQDGFAGEIGHMIV 242 Query: 244 NPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW-QSGE 302 P G+ C+CG GC E AS +++ + R P+ T I W ++ E Sbjct: 243 VPGGLPCNCGNKGCWEKYASETSVFQLLRAK----------KPDADITYAQIGNWIEAKE 292 Query: 303 PWITSWVDRSANAIGLSLYNFLNILN 328 P T +++ + + L N +NI N Sbjct: 293 PDATELIEQFIYYLSIGLNNIINIYN 318 >UniRef50_A9KTE3 ROK family protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KTE3_CLOPH Length = 381 Score = 88.6 bits (218), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 74/327 (22%), Positives = 141/327 (43%), Gaps = 29/327 (8%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 + IR N ++LE + + + +++ +++ ++ +S I+ + ++K VV I E Sbjct: 7 ELIRDINSKLVLETIIQNEPISRAAISKKLGLTKATISAIVSDFINDKLVVEIGSEDTGL 66 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYL-QIDAPTPQAL---LS 123 G + + +C+++ + I C +++ KGE + QI P+ L L Sbjct: 67 GRKPILLSFHKKAGYAICVDIEVSRISCMISDL----KGEQRSVKQIKTPSESNLVPVLI 122 Query: 124 EIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPW--TTPVEVKYLLEEKLG 181 ++ + + P I +A+ IHG V + P+ + + L G Sbjct: 123 DLIQSMESEYEKTPYGLIGIAIGIHGVVH-----QNEVLFTPYYNLNGINLSEQLGSYFG 177 Query: 182 IRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 + V ++N+ + AL EK +++ G+G ++N+Q+Y G +G+ GHT Sbjct: 178 VPVFLENEANLSALGEKAYLPETYTSLANLSIHSGVGLGIILNKQLYTGYHGNAGEFGHT 237 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 IV +G C CG GCLE AS R LK LD L+ A++ Sbjct: 238 IVVMNGRTCPCGNQGCLEQYAS-------ERALLKEYSEDASLD-------DLLLAYEKK 283 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILN 328 EP ++ N + + + N N ++ Sbjct: 284 EPKAMGVMEHFVNYMAVCVNNLQNTIS 310 >UniRef50_C4RIY1 ROK-family transcriptional regulator n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RIY1_9ACTO Length = 423 Score = 88.2 bits (217), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 80/348 (22%), Positives = 140/348 (40%), Gaps = 20/348 (5%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 R + N R +L+LL + ++ LA L+ ++ ++++++ L V+ + Sbjct: 19 RGMLRNDDGRVTTAGRMLDLLRTRSTLSRVELAELSGLTQATITHVVRRLIDGGLVLEVG 78 Query: 62 DESQTRGHSSGTWLIAPEGDWTLCLNV---TPTSIECQVANACLSPKGEFEYLQIDAPTP 118 E Q RG + + + + + V T T + A ++ G F P Sbjct: 79 REQQGRGQPRRLLELNADAWYAVGVQVDRTTTTIVVIDFAGRRVATAG-FRGTGTSGPDA 137 Query: 119 --QALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 AL I+ H + + I + L HG D G+ P + L Sbjct: 138 AVSALADHIDDLLH-STAVPRERVIGVGLVTHGPQDRERGMLLMAHPTPDWLQYPLTSTL 196 Query: 177 EEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 +LG+ V+++ND A E+W F +I + G+G V N YRG + Sbjct: 197 SNRLGLPVLLENDATAAATGEQWSGTVPTDTFGLIYLGSGLGGGIVANGNAYRGRASNAV 256 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQ--------ARVWLKSQPVSTQLDPEK 288 +IGH + C CG GC E A + Q R+ +K+ T D E+ Sbjct: 257 EIGHVGLMGASAPCVCGNCGCAEAEAGPHTVVAQVLAHPDLAGRLGIKAHEEDTLADFER 316 Query: 289 LTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 + AWQ+ +P T+ + RSA IG + +N+ +++ + L G Sbjct: 317 VAR-----AWQADDPDATAILQRSARWIGRAAVTMVNLFDLDTVVLAG 359 >UniRef50_A4FQW3 Transcriptional regulator, ROK family n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FQW3_SACEN Length = 405 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 79/352 (22%), Positives = 155/352 (44%), Gaps = 8/352 (2%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N ++ N+ V+L+ + ++ LA ++ +SNI++ L ++ V Sbjct: 10 NLPRVGGFNRAVVLDTIRAHGEVSRVELAERTGLTAQTMSNIVRALMADGLVAENGHAPS 69 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVAN--ACLSPKGEFEYLQIDAP-TPQALL 122 T G + P+ ++ L++ P SI + + + + Q +P T A L Sbjct: 70 TGGKRRVLLRVVPDAYSSVGLHLDPESITGVLLDLAGGVRLRSRRRVPQDASPATVAAAL 129 Query: 123 SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 + K R + + + LA+ G +D P P V + L+E++ G+ Sbjct: 130 TRTLKQLVRRSGIDESRVLGVGLAVPGPLDADHRRVLGPPNLPGWDDVALADLVEQRAGM 189 Query: 183 RVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V++DND A+ E+W R F + + G+G V+ +Q++RG+ +G+IGH Sbjct: 190 PVVMDNDATAAAIGERWAAGKARRGSFVYVYLGAGVGVGVVLGDQVHRGTSNNAGEIGHV 249 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 G C CG+ GCLE S+ A+ + WL S S + D ++ A G Sbjct: 250 NGGGAGRPCSCGKRGCLEAYCSMRAIVDE---WL-SATGSPEGDSVSADYEEICRAAAGG 305 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT 353 + + ++A +G +L +++L+++ + L G + E + + + +T Sbjct: 306 DATAVRLLRQAATKLGQALATVVSVLDVDHVVLGGPALRHVEELVRSRVEKT 357 >UniRef50_D1BZ00 ROK family protein n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BZ00_XYLCX Length = 383 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 69/265 (26%), Positives = 122/265 (46%), Gaps = 8/265 (3%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 + R HN+ ++L+ L+ + +++ LAR ++ VS+++ L +E V + + + R Sbjct: 26 EHTRAHNRAMVLQHLFHEGPTSRADLARATSLTRVTVSDLINVLMAEGLVEELGVQ-RGR 84 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEF---EYLQIDAPTPQALLSE 124 G L+ D + V S + + A L+ GE L +D T L++ Sbjct: 85 GVGKPAILVGMRTDAFQIVAV-DLSDDTVMRGAVLTLTGEAVVRRSLAVDDRTGDELVAL 143 Query: 125 IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184 IE+ R I + + G +D +G P W + + +L ++LG+ V Sbjct: 144 IERFARRLVAAATQPVIGVGIGAPGVIDG-SGRVHEAPNRKWV-DLPLAAILSDRLGLPV 201 Query: 185 MVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVN 244 V ND + AL E + + V+ V G+G+ V++ G+ +G++GH V Sbjct: 202 QVANDADVAALGEYTYGGASD-SLLVVTVGQGVGAGLVVDGSRVYGTNSAAGELGHVTVV 260 Query: 245 PDGVVCDCGRYGCLETVASLSALKK 269 DG C CGR GCLET+ S L++ Sbjct: 261 DDGEECACGRRGCLETLLSAPNLRR 285 >UniRef50_B0PG67 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG67_9FIRM Length = 398 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 78/335 (23%), Positives = 145/335 (43%), Gaps = 16/335 (4%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N Q ++ N+ ++L++L ++ +A A +S +NI+ +LE+ + ES Sbjct: 9 NAQDMKTRNRLLVLQMLCTYGPLSRGEIAARAGLSKMTATNIISDLETAGLIAEEKGESA 68 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPK-----GEFEYLQIDAPTPQA 120 G G ++P L +T C+ A LS + +D P Sbjct: 69 GAGRRPGLIRLSPA--SPLVCGITIGRRRCEAVLADLSAQIVARESACYDNALDGPRLSE 126 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 LL+ + R K + +A G +D G P + V+ +L + Sbjct: 127 LLARL---CSRLLKRVDRPVAGIGVAALGPLDARAGTLLNPPNFYGIGHLPVRAILSDAS 183 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 G+ ++ +D ALAE+ Q F + + GIG+ V++ ++ G SG++G Sbjct: 184 GLPCVLLHDVSAAALAEQLYGAGQAFESFFYLQIRDGIGAGMVLDGALFDGVAGLSGELG 243 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 H +N +G C CG GCLE AS AL AR + + PE + A I+A Sbjct: 244 HVSINFEGPQCACGGRGCLECYASERALLAYAREYAARTGTAA---PENWSDA--ISAAG 298 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWL 334 +G+ + ++R + +L N L +++++++++ Sbjct: 299 TGDAACAAALERYCGYVAAALSNALCLIDVHRVFV 333 >UniRef50_A3CKM1 ROK family protein, putative n=2 Tax=Firmicutes RepID=A3CKM1_STRSV Length = 398 Score = 88.2 bits (217), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 73/337 (21%), Positives = 153/337 (45%), Gaps = 15/337 (4%) Query: 15 KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD-ESQTRGHSSGT 73 + +L+ LY ++ ++ +++ QI+ +I+ EL E V+ + + ++ G Sbjct: 11 RATVLDQLYAKRPISRIDISKETQITPATTGSIINELIKEGLVLELGELNDESVGRKKTL 70 Query: 74 WLIAPEGDWTLCLNVTPTSIECQVA-NACLSPKGEFEYLQID---APTPQALLSEIEKCW 129 IAP + L ++ + +A N + QI+ P+ Q ++ I+ Sbjct: 71 LDIAPRSRYYLGFEISEKQLAIVIADNTGEIAESSIRTYQIEVTGGPSDQEIIRLIQDFL 130 Query: 130 HRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDND 189 ++ + +P I L L H + + P W + ++ ++E + V N Sbjct: 131 KKNSQ-YPISAIALGLPGHVNLSESDFIISKNPH--WGQ-INLQ-TIQEAFDLPVYFANK 185 Query: 190 CVMLALAEK-WQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGV 248 L +AE+ + + + +F V +V GI S++ IY Y G++GHT++NP+G Sbjct: 186 SHCLTMAERLFSYHPTDSNFIVYHVARGIHCSYMYKGSIYSQENYLIGEVGHTVINPEGE 245 Query: 249 VCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQL----DPEKLTTAQLIAAWQSGEPW 304 C CG++GCL+ AS SAL +A + ++ S D + L+ A++ G+ Sbjct: 246 RCPCGKHGCLQVYASESALIDKAAILYRASQTSLLKTLVEDANDIDLTSLMTAYRLGDLG 305 Query: 305 ITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAF 341 + + + +S+ N +++ +I+L G+ ++ Sbjct: 306 SIELIHTACRYLAISISNLCQLIDSERIYLDGQLFSY 342 >UniRef50_C7R070 ROK family protein n=2 Tax=Micrococcineae RepID=C7R070_JONDD Length = 410 Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 64/214 (29%), Positives = 95/214 (44%), Gaps = 25/214 (11%) Query: 134 KLWPDHTINLA----LAIHGQVDPVTGVSQTMPQAPW-------TTPVEVKYLLEEKLGI 182 +L P H+ + LA+ G VDP + P W TTP+ Sbjct: 146 ELRPTHSTPIITGAHLALPGLVDPNNATLRIAPNLGWADLDPVDTTPISAAVTAATGQHT 205 Query: 183 RVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 V + N+ ALA K Q N F ++ + GIGS+ +++ ++ G SG++GH Sbjct: 206 NVRIGNEANYGALAAKEQANLNT--FIYVSGEVGIGSAIILDHTLFLGRRGWSGELGHVT 263 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 ++P G C CG GCLE A L A+ A QLD T L+ A + G Sbjct: 264 IDPTGPQCSCGSRGCLEQYAGLDAMLTAA-----------QLDTSAGITG-LVTALEQGN 311 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 P V R+A A+G +L + N+L+I+ L G Sbjct: 312 PHAHDAVQRAATALGRALSGYANLLDIHMFVLGG 345 >UniRef50_C6W7D4 ROK family protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W7D4_DYAFD Length = 407 Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 75/329 (22%), Positives = 148/329 (44%), Gaps = 21/329 (6%) Query: 22 LYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIAPEGD 81 LY+ + + +A+L SIP+ + I+ +L E + G + + + Sbjct: 27 LYQNGDTSINKMAKLFHASIPSATGIVNDLMREGWITETGTGPARAGRPPVLYGLNSKKY 86 Query: 82 WTLCLNVTPTSIEC---QVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHR----HRK 134 TL +++ + + N + + L A + L + + H K Sbjct: 87 LTLIMDINRHDTQLVIFDLHNQLILKRKVAIRLDDSANFLEELFASTDDFLKSNNISHSK 146 Query: 135 LWPDHTINLALAIHGQVDPVTGVSQT-MPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVML 193 LW + +++ G ++ G++ T + P P+ V YL +E + V + ND Sbjct: 147 LW-----GIGVSMPGLINSSQGINLTYLNLTPPGVPL-VTYL-KEHFDLPVCLFNDTKAT 199 Query: 194 ALAE-KWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDC 252 + E ++ + IN+D+G+G +IN +++ G+ +G++GH V PDG++C C Sbjct: 200 TIGEHRFGYAVDKSQVLTINIDWGVGLGIIINGEVFNGASGFAGELGHIQVKPDGMLCHC 259 Query: 253 GRYGCLETVASLSALKKQARVWLKS--QPVSTQL---DPEKLTTAQLIAAWQSGEPWITS 307 G+ GCL+T+ S AL +QA+ + S + Q+ D E+L T+ +I A +G+ + Sbjct: 260 GKVGCLDTITSAIALIRQAKEGIHSGRATILKQIVNNDLEQLETSHIIEAVHAGDEFSID 319 Query: 308 WVDRSANAIGLSLYNFLNILNINQIWLYG 336 + +G L +++ N I + G Sbjct: 320 LLSTVGTELGKGLATAVHLFNPEVIIVGG 348 >UniRef50_A1WMZ8 ROK family protein n=2 Tax=Proteobacteria RepID=A1WMZ8_VEREI Length = 372 Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 71/271 (26%), Positives = 118/271 (43%), Gaps = 18/271 (6%) Query: 135 LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLA 194 L I + + + G VD +G P P ++ L E V VDND ++A Sbjct: 106 LSSSQLIAIGMGVPGPVDFASGQLVNPPLMPDWDGFSIRDYLREAFVAPVFVDNDVNLMA 165 Query: 195 LAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGR 254 L + W+ DF VI V GIG V + Q+YRG+ +G +GH V+ G C CG Sbjct: 166 LGKLWRLQRTLSDFLVIKVGTGIGCGIVCHGQVYRGTNGSAGDVGHICVDQAGPRCHCGN 225 Query: 255 YGCLETV--------ASLSALKKQARVWLKSQ-PVSTQLDPEKLTTAQLIAAWQSGEPWI 305 GC+E + A++ +K WL + S L E L A + G+ Sbjct: 226 QGCVEAMAAAPALVRAAIEVAQKGESSWLAERLQASGSLGIEDLAQASRV-----GDVAA 280 Query: 306 TSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPS 365 + R+ + +G L + +N N + +++ G G +L + +RQ+ ++ R S Sbjct: 281 NILIQRAGSLVGQMLASVVNFFNPSHVFIGGLVADMGPLFLAS-VRQSVYH---RSLALS 336 Query: 366 VKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 + +I L+ ++G G L ++ L Q Sbjct: 337 TRHLEIQCAPLADDAALVGAGVLAMQESLTQ 367 >UniRef50_A4WVU3 ROK family protein n=9 Tax=Rhodobacteraceae RepID=A4WVU3_RHOS5 Length = 425 Score = 87.8 bits (216), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 55/178 (30%), Positives = 89/178 (50%), Gaps = 13/178 (7%) Query: 170 VEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIY 228 V + L E+LG+ V VDND + A+AE W + DF V+ +++G+G V N +I+ Sbjct: 193 VPLGRLATERLGLPVQVDNDANLCAMAELWFGAGRRLSDFVVVTIEHGLGMGMVTNHRIF 252 Query: 229 RGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWL-----KSQPVSTQ 283 RG+ ++GHT V DG +C CG+ GCLE + AL ++A L +SQ ++ Sbjct: 253 RGARGIGMELGHTKVQLDGALCRCGQRGCLEAYVADYALAREATTALNWTHRESQSMAIL 312 Query: 284 LDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAF 341 L+ L ++G S R+ + + L N +N+++ I L G F Sbjct: 313 LE-------SLHDHAKAGNQAARSIFRRAGRYLAVGLANIVNLVDPPLIILAGARLRF 363 >UniRef50_C1A104 Glucokinase n=9 Tax=Actinomycetales RepID=C1A104_RHOE4 Length = 333 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 69/252 (27%), Positives = 121/252 (48%), Gaps = 19/252 (7%) Query: 83 TLCLNVTPTSIECQVANACLSPKGEFEYLQ-IDAPTPQALLSEIEKCWHRHRKLWPDHTI 141 T+ ++V TSI V + + + L+ I APTPQ+ + + R+L H + Sbjct: 6 TVGIDVGGTSIRASVVDV------DGQVLEMIQAPTPQSARALEDGLDRVVRELVTRHEV 59 Query: 142 N-LALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAE-KW 199 + + LA+ G + + P PW V L ++LG+ V++++D A AE ++ Sbjct: 60 SAVGLAVAGFITSDRSSVRFAPHLPWVD-APVGSDLSKRLGLPVVLEHDANAAAFAEHRF 118 Query: 200 QNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLE 259 + R+ ++ + GIG + +IN ++YRGS + ++GH V P G C CG+ GC E Sbjct: 119 GAAAGGRNVVMVAIGTGIGGALLINGELYRGSHGVAPELGHIQVVPGGRQCACGKRGCWE 178 Query: 260 TVASLSALKKQARVWLKSQPVST-------QLDPEKLTTAQLIAAWQSGEPWITSWVDRS 312 S +AL A L + P ++ +DP LT ++ A Q G+P + + Sbjct: 179 RYCSGTALVDTAIELLAADPAASTVLAREVAVDPGSLTGRRIANAAQDGDPLALATIAEF 238 Query: 313 AN--AIGLSLYN 322 A+GL++ Sbjct: 239 TRWLAVGLAMVG 250 >UniRef50_D1VHL9 ROK family protein n=1 Tax=Frankia sp. EuI1c RepID=D1VHL9_9ACTO Length = 385 Score = 87.4 bits (215), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 69/275 (25%), Positives = 122/275 (44%), Gaps = 13/275 (4%) Query: 7 NQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQT 66 Q R H++ +IL+ L+ + +++ LAR ++ VS+++ L + V + +T Sbjct: 34 GQDARRHHRALILQQLFSEGSNSRADLARATGLTRVTVSDLVGGLIEDGLVAELGSPVET 93 Query: 67 RGHSSGTWL-IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEI 125 R T + I + + L+++P + ++ A + F ++ P+ S Sbjct: 94 RIGKPPTLVGIVADAAHIVALDLSP---DDRMIGAV---QDLFGVVKARVELPREGRSGA 147 Query: 126 EKCWHRHR-----KLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 E R + D + V GV P W V++ L +L Sbjct: 148 EAVRLAVRLAEELRAATDRPLLGVGVGSPGVVDARGVVLDAPNLSWRD-VDLAGTLHREL 206 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 G+ V V ND L E + + DF ++ + G+G+ VI + +G + +G+IGH Sbjct: 207 GVPVYVANDANTAVLGEHTFGEAGDGDFMLLRIATGVGAGLVIGGVLVQGHAWAAGEIGH 266 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWL 275 +V+P G C CGR GCLETV ++ L+ Q R L Sbjct: 267 VVVDPAGKPCACGRAGCLETVLAVPRLRAQDRAGL 301 >UniRef50_D1CIH3 ROK family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CIH3_THET1 Length = 418 Score = 87.4 bits (215), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 85/351 (24%), Positives = 156/351 (44%), Gaps = 10/351 (2%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGH 69 +R N ++L +L ++++LA + ++ VS+++ EL V + E+ Sbjct: 13 VRELNLSIVLNVLREHSPLSRASLAAITGLNRATVSSLINELTRAGLVWEVGIEATDDVG 72 Query: 70 SSGTWL-IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKC 128 G L + P + + V I +A+ + D +P+ +L Sbjct: 73 RPGRLLELDPHAGRIIGMEVGVDFIALAIADFSSQIIWKRWVELTDGKSPEEVLGLAADL 132 Query: 129 WHRHRKLWPD---HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVM 185 +L + L + + G VD G P W V V+ + EE+ V Sbjct: 133 IQEGVELTDKEYGQVLGLGVGVPGLVDVPRGHLLFAPNLGWRD-VPVRSMFEERFPFTVY 191 Query: 186 VDNDCVMLALAEKWQNNSQERDFCV--INVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV 243 V+N+ M AL E + ++ + CV I+ G+G V+ QI RG++ SG++GH + Sbjct: 192 VENEANMAALGESYFGVARGYN-CVLYISAGVGVGGGIVLGGQIMRGAMGFSGEVGHMTM 250 Query: 244 NPDGVVCDCGRYGCLETVASLSAL-KKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 DG +C CG GC ET+AS SAL ++ ++ + + LT ++ A ++G+ Sbjct: 251 VEDGPICGCGNRGCWETLASESALVRRMLEALRRAGETPSWARDDHLTVPTVLEAARAGD 310 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT 353 ++ A +GL + N +N+LN +I + G + G + + IR+T Sbjct: 311 RLARGVLNEVARDVGLGIANLVNVLN-PEIVVLGGMLSMGGDLMLPTIRET 360 >UniRef50_C3QC45 ROK family transcriptional repressor protein n=19 Tax=Bacteria RepID=C3QC45_9BACE Length = 402 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 83/348 (23%), Positives = 159/348 (45%), Gaps = 29/348 (8%) Query: 33 LARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTS 92 L++ +S+P V+ + E+ + + + + G + + PE + L +++ + Sbjct: 37 LSKELDLSVPTVTKFIGEMCDDGYINDYGKLETSGGRHPNLYGLNPESGYFLGVDIKRFA 96 Query: 93 IECQVANACLSPKGEFEYLQIDAPTP--QALLSEIEKCWH-----RHRKLWPDHTINLAL 145 + + N KG+ L+++ P ++ E C H + + + +N+ + Sbjct: 97 VNIGLINF----KGDMVELKMNIPYKFENSIEGMNELCKHILNFIKKLTINKEKILNINV 152 Query: 146 AIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQ- 204 + G+V+P +G S + +V L EKLG +V +DND + E Q + Sbjct: 153 NVSGRVNPESGYSFSQFNFEERPLADV---LSEKLGYKVTIDNDTRAMTYGEYMQGCVKG 209 Query: 205 ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASL 264 E+D +NV +G+G +I+ +IY G SG+ GH + ++C CG+ GCLET AS Sbjct: 210 EKDIIFVNVSWGVGIGIIIDGKIYTGKSGFSGEFGHMSAYDNEIICHCGKKGCLETEASG 269 Query: 265 SALKKQARVWL------KSQPVSTQLDPEK--LTTAQLIAAWQSGEPWITSWVDRSANAI 316 SAL R+ L +S +ST++ E+ +T ++IAA + V+ + Sbjct: 270 SALH---RILLERIQSGESSILSTRIATEENPITLDEIIAAVNKEDLLCIEIVEEIGQKL 326 Query: 317 GLSLYNFLNILNINQIWLYGRSCAFGENW---LNTIIRQTGFNPFDRD 361 G + +NI N + + G G+ + T +R+ N ++D Sbjct: 327 GKQIAGLINIFNPELVIIGGTLSLTGDYITQPIKTAVRKYSLNLVNKD 374 >UniRef50_B0PDL5 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PDL5_9FIRM Length = 380 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 75/336 (22%), Positives = 151/336 (44%), Gaps = 35/336 (10%) Query: 17 VILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLI 76 +IL+++ + ++S +AR+ +S + + I+ LE V ++ S G + + Sbjct: 3 MILDIIRDSREVSRSEIARMTGMSPTSATRIVGSLEECGLVRDMAAVSNGVGRKAVMLDV 62 Query: 77 APEGDWTLCLNVTPTSIECQVAN---------ACLSPKGEFEYLQIDAPTPQALLSEIEK 127 + + L+++ T+++ + N A +P F+ P+ ++ + Sbjct: 63 EENAFYCIGLDISETNLKLCILNFGGQIVARGAAPAPGDSFQ--------PEEVVEIFYR 114 Query: 128 CWHR---HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184 + R K+ + + G VD TG W+ V + ++E + G+ Sbjct: 115 MYQRLAIQAKIPMEKVAAIGAGAVGTVDSKTGEVIFGDLIRWSH-VPIGQMIEARFGLPT 173 Query: 185 MVDND--CVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 VDND C ++ + D +++ G+G + + ++ RGS+ +G+IGHTI Sbjct: 174 YVDNDVKCAIIGDCSTPPIKGAD-DVVLLSFGCGVGGAVIHRGRLVRGSINSAGEIGHTI 232 Query: 243 VN-PDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 V+ DG +C CGR GC + + +QA KS P + L+ +++AAW+ Sbjct: 233 VDYTDGRLCSCGRRGCAAAYLTKDQIIQQA---AKSCPGISSLE-------EIMAAWERR 282 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGR 337 EPW + +DR + + +++ N LN + L G+ Sbjct: 283 EPWAEALLDRISTYMAITVSNAACFLNPRNMILGGK 318 >UniRef50_A6DFD9 Probable transcription repressor n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DFD9_9BACT Length = 320 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 9/195 (4%) Query: 149 GQVDPVTGVSQTMPQAPWTT-PVEVKYLLEEKLGIRVMVDNDCVMLALAE-KWQNNSQER 206 G V+P TG+ P + P++ K L + I V ++ND E + Sbjct: 73 GLVEPKTGLVYDTPNLGFKNFPLQEK--LSQDFNIPVHIENDVNAGLYGELHFGAARGME 130 Query: 207 DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSA 266 + ++ G+G + VI+ ++ RGS G+G+ GH IV PDG +C CG+ GCLE ++S +A Sbjct: 131 NVLALSPGTGVGGAIVIDGKLIRGSRGGAGEFGHIIVQPDGPLCGCGQRGCLEAISSRTA 190 Query: 267 LKKQARVWLKSQPVSTQLDP-----EKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLY 321 L +Q + V +D +K+ + + A+ SG+ + + VD +A +G+ + Sbjct: 191 LSQQILSFAVRGRVPLVIDEAKGNLKKVKSGLIARAYNSGDEDVQAIVDYAARYLGVGMS 250 Query: 322 NFLNILNINQIWLYG 336 N +N N I L G Sbjct: 251 NLVNSFNPEAIILGG 265 >UniRef50_C8P1T2 Regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1T2_ERYRH Length = 392 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 80/343 (23%), Positives = 162/343 (47%), Gaps = 17/343 (4%) Query: 17 VILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI-DDESQTR-GHSSGTW 74 +IL+LLY + ++ +++ I+ VS++ Q L ++K + I +D TR G Sbjct: 13 LILDLLYSKGPLSRIDISKSLHITPATVSDLTQHLINDKIICEIGEDTDNTRVGRRKILL 72 Query: 75 LIAPEGDWTLCLNVTPTSIECQVANAC--LSPKGEFEYLQIDAPTPQALLSEIEKCWHRH 132 + P + L + + S +++ + + F + D L+ I +H Sbjct: 73 GLLPNHSYYLGVELFEHSFTLALSDNLNEICFEEAFTLSKSDHVRHDLLVKTINDFLKKH 132 Query: 133 RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVM 192 ++ +AI G D + T + W + YL ++ L V +N+ Sbjct: 133 SDTA---VTSIGIAIPGHYDKTSAHILTNNHS-WAN-FSLDYL-KKHLKYPVYFENNVNA 186 Query: 193 LALAEK-WQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCD 251 +A+ E+ + ++ + +F ++ GI S+V +Y + Y G+IGH +VNP G C+ Sbjct: 187 MAIRERLFGHDKTDANFLFLHFRRGIFCSYVYQGDLYARNNYFVGEIGHLVVNPFGEQCE 246 Query: 252 CGRYGCLETVASLSALKKQARVWLKSQPVS--TQL--DPEKLTTAQLIAAWQSGEPWITS 307 CG+ GCL+T AS + L +A + S + QL + +L+ L+ A+ G+ + Sbjct: 247 CGKIGCLQTYASQTWLLHKASLLFNSSANTYLKQLVNEEHELSMDILLQAYHLGDSAVIQ 306 Query: 308 WVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTII 350 ++ + N + ++L N + L+ + I+L+G+ F + L+T++ Sbjct: 307 LLENAINFLAIALNNIIVTLDTDIIYLHGQ--LFDDEQLSTLL 347 >UniRef50_C6JJM8 Transcription regulator n=2 Tax=Fusobacterium RepID=C6JJM8_FUSVA Length = 402 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 50/151 (33%), Positives = 82/151 (54%), Gaps = 4/151 (2%) Query: 115 APTPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKY 174 A +L +E R + TI +++ ++G VD G+S P W +++K Sbjct: 123 AQKENNILKTVEVIIKRELNKNKEITI-ISVIMNGMVDSEAGISIFSPHYNWKN-IKLKE 180 Query: 175 LLEEKLGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLY 233 LLE+K RV ++ND +AL EK + +E+ +F V+N+ G+G S +N+ +Y+G Sbjct: 181 LLEKKFNRRVFIENDVRGMALTEKIFGSCKEKHNFVVLNIGDGVGGSIFLNDSLYKGYGS 240 Query: 234 GSGQIGHTIVNPDGV-VCDCGRYGCLETVAS 263 SG++GH +V + C CG+ GCLET S Sbjct: 241 MSGELGHMVVKRNSSEKCSCGKRGCLETEVS 271 >UniRef50_C7Q736 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q736_CATAD Length = 402 Score = 87.0 bits (214), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 84/344 (24%), Positives = 151/344 (43%), Gaps = 19/344 (5%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 RA + +R HN+ +L LY + N++ LAR + +S +SN++ +L + V Sbjct: 4 RAQKTTRDLRWHNRADLLTRLYLGEATNRNDLARASGLSAATISNVVSDLIGDGLVGENG 63 Query: 62 DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAP--TPQ 119 +S G + P + +++ T I + + L P E E +D P PQ Sbjct: 64 SQSSAGGRPRSLLRVLPAFGHVVGIDIGETEIRVGLFDWTLHPVAE-EARPVDIPRVPPQ 122 Query: 120 ----ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 +LSEI R + D + + + + G V P W+ V + L Sbjct: 123 QVADQVLSEIAAVTARA-GIAVDDLLGVGIGVPGAGGSVI----HAPTLGWSA-VPLAGL 176 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 L ++LG +DN + L AE W+ ++ + V + G G+ ++ G S Sbjct: 177 LRDRLGFTPDIDNGAMALGQAEAWRGAARGAERAVALL-LGTGAGGALSLAAGPGGRARS 235 Query: 236 GQI--GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQ 293 + GHT+V+ +G C CG GCLET A+ + S P++ D + ++ Sbjct: 236 FTMEWGHTVVDLEGPHCRCGARGCLETYIGAEAILARYAATPGSTPLAE--DGVEAQLSE 293 Query: 294 LIA-AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 L+A A Q E +D +A +G+ + N +N++ +++ + G Sbjct: 294 LVARASQHHESAALEVLDATATYLGVGISNLINLVAPDRVIISG 337 >UniRef50_A6WEF3 ROK family protein n=2 Tax=Actinomycetales RepID=A6WEF3_KINRD Length = 390 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 72/283 (25%), Positives = 116/283 (40%), Gaps = 31/283 (10%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 RA + Q R HN+ V+L LL+ + +++ LAR ++ VS I+ +L ++ V + Sbjct: 26 RAKVLPSQARAHNRSVVLGLLFHEGPVSRADLARATGLTRVTVSEIVGDLLTDGLVAELG 85 Query: 62 DESQTRGHSSGTWLIAPEGD-WTLCLNVTPTSIECQVANACLS--PKGEFEYLQIDAPTP 118 + PEG + V + E V L P L + Sbjct: 86 --------------LRPEGRVGKPAMMVGLRAAEHHVVAVDLQRLPAARVAVLDLSGTVV 131 Query: 119 QALLSEI------------EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPW 166 +++ E P + + + G VD TG + W Sbjct: 132 SETTADVTGLRGEDATAALEDLCRAGIAGAPQRVVGVGIGTPGIVD-ATGRVVESARLGW 190 Query: 167 TTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQ 226 + V + L LG+ V V ND ALAE + F V+ V G+G+ V++ Sbjct: 191 RS-VPLAERLSHALGVGVHVANDADTAALAEFTYGEASPSGFMVVAVGQGVGAGLVLDGH 249 Query: 227 IYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKK 269 + RG +G+IGH V+P G C+CGR GCLET+ + + L + Sbjct: 250 LVRGHRLAAGEIGHLTVDPRGEPCECGRRGCLETIVAPAYLDR 292 >UniRef50_D1BCW6 Transcriptional regulator/sugar kinase n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BCW6_SANKS Length = 429 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 82/362 (22%), Positives = 151/362 (41%), Gaps = 26/362 (7%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 Q R + VI++ + ++ L ++ VS +++ L + VV T Sbjct: 3 QAQRSASTSVIVDAIRASGTVSRVGLTVTTGLTGATVSTVVRRLIDDGLVVETGRAESTG 62 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEI-- 125 G + P + + +++ SI C V + + + +P +L E Sbjct: 63 GKPRVLLELDPTARYAVGVHLDHASITCTVTDLAGTSVALSTHPGPGTRSPAEVLVETAA 122 Query: 126 -------EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 E R R L + G + G+ +T P+ T + L Sbjct: 123 EVDRLVDEAGVDRSRVL------GIGFVAPGPLTSDGGMHRTPPEMRAWTDYPITSELGR 176 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 G+ V+++ND A+ E W + E F V+ + G+G+ V++ YRGS +G+ Sbjct: 177 LTGLPVVLENDATASAIGEHWAGGTGTENSFAVLYMGTGLGAGLVLDGVAYRGSSGNAGE 236 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQAR--------VWLKSQPVSTQLDPEKL 289 IGHT ++ DG VC CG GC+E +A +A+ +AR L + ++ P + Sbjct: 237 IGHTTLDLDGPVCWCGTRGCVEVLAGPAAVVAEARRSPDLAAAAGLSTGTSGSEPQPSVV 296 Query: 290 TT-AQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRS-CAFGENWLN 347 + A + A +G P ++RSA + + +N+L++ + L G S A G+ +L Sbjct: 297 SDLAAVARAAAAGHPGARDVLERSARYVAAAALTAVNLLDVRMLVLTGASLAAAGDIYLP 356 Query: 348 TI 349 + Sbjct: 357 AV 358 >UniRef50_A0KIG1 N-acetylglucosamine repressor n=151 Tax=Gammaproteobacteria RepID=A0KIG1_AERHH Length = 425 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 77/278 (27%), Positives = 124/278 (44%), Gaps = 22/278 (7%) Query: 116 PTPQALLSEI----EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVE 171 P LL EI + R R L I++AL + G V+P +G+ P+ + Sbjct: 142 PVVDMLLREIGAFIDSQQDRSRNL-----ISIALTMPGLVNPESGMVIYTPKYQIRN-LA 195 Query: 172 VKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRG 230 + LLE + V ND LALAE + S++ D +++V G GS + +++ G Sbjct: 196 LAKLLENHFNLPCYVGNDTRSLALAEHFFGESRDCMDSILVSVHQGAGSGIITKGKVFLG 255 Query: 231 SLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLT 290 G+IGH V P G C CG +GCLET+AS A+ + + + +S+ L + +T Sbjct: 256 QNRNVGEIGHIQVEPLGKRCHCGNFGCLETIASNEAIVDKVKELISRGHLSS-LQEKHIT 314 Query: 291 TAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTII 350 ++ A +G+ S ++ +G ++ +N+ N ++ + G A E I Sbjct: 315 IQEVCKAAMAGDELARSVIENVGEHLGRAVAITVNLFNPQKVLIAGEITAAEEILFPAIR 374 Query: 351 R---QTGFNPFDRDEGPSVKA------TQIGFGQLSRA 379 R F R P VKA T GF + RA Sbjct: 375 RCVEHQSLPSFHRGL-PIVKARFQNQPTVGGFALVKRA 411 >UniRef50_Q1IJT5 Glucokinase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJT5_ACIBL Length = 347 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 52/201 (25%), Positives = 98/201 (48%), Gaps = 7/201 (3%) Query: 136 WPDHT--INLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVML 193 + DH I + + + G +D TG + P P + V +E +LG +V+++ND Sbjct: 57 YQDHGKLIGIGIGVPGFIDMDTGTVRESPNLPGWSNYPVHKDIESRLGTKVILENDANAA 116 Query: 194 ALAEKWQNNSQERDFCVI-NVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDC 252 A+ EKW ++ D V+ + G+G ++ +++ G +G++GH V PDG +C C Sbjct: 117 AMGEKWLGAGRDTDDMVMYTLGTGVGGGIIMAGRLWHGMNGMAGELGHHTVLPDGHICGC 176 Query: 253 GRYGCLETVASLSALKKQARV----WLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSW 308 G +GCLE AS +A+ + AR L + + + ++ + G+ Sbjct: 177 GNHGCLEQYASATAVVRMAREAVANGLSDALANASRNDVEFSSKVIYQLAIQGDKAAQEI 236 Query: 309 VDRSANAIGLSLYNFLNILNI 329 + ++IG+++ N +N LN Sbjct: 237 FNTVGHSIGIAVANMVNALNF 257 >UniRef50_D2ASC3 Transcriptional repressor of the xylose operon n=2 Tax=Streptosporangium roseum DSM 43021 RepID=D2ASC3_STRRD Length = 397 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 95/402 (23%), Positives = 163/402 (40%), Gaps = 49/402 (12%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 + +R N+ V+L LY + ++ L+ L +S +VSN+ +L ++ +V Sbjct: 10 RDLRRGNRAVLLRTLYFEGPTSRHELSGLTGLSAASVSNVTGDLIADGIIVEAGLVESDG 69 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEK 127 G + PE + + ++V T + ++ + ++ + + +Y P Sbjct: 70 GRPRVLLRVDPEFGYAIGVDVGETHVRVELFDLDMNERAKADY-------PLRPGRHDVD 122 Query: 128 CWHRHRKLWPDHTINLALAIHGQVDP---------VTGVSQTMPQA-------PWTTPVE 171 RH D A+ G VDP V G+ ++ P+A W V Sbjct: 123 LVVRHILSGID-----AVLAAGGVDPARVLGVGIGVPGIVESGPEALIHAQTFGWDA-VP 176 Query: 172 VKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRG 230 + LL + + VDN + AE W + R V + G G+S + + YRG Sbjct: 177 LGTLLRAGTSLPLYVDNGAKTMGQAELWFGAGRGTRHTIVALIGSGAGASIITDGIAYRG 236 Query: 231 SLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLT 290 + +G+ GHT + G C CG GCLE ++ +A +S ++ E+ Sbjct: 237 ANSSAGEWGHTKIMMGGRACRCGGRGCLEAYIGAESILDRA-------GLSAEIADEQAV 289 Query: 291 TAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG-RSCAFGENWLNTI 349 A+L+ +SG P I D +A+ +G L N +N+ N +I + G G + L I Sbjct: 290 LAELV---RSGGPVI----DETADYLGAGLANLINLFNPERIVIGGWAGLLLGRHHLTRI 342 Query: 350 IRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVE 391 R N + G + I G+L LG L VE Sbjct: 343 RRSAADNSLTQPYGTA----SIVLGRLGPDAVALGAATLVVE 380 >UniRef50_C6Y2I3 ROK family protein n=4 Tax=Sphingobacteriales RepID=C6Y2I3_PEDHD Length = 408 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 73/340 (21%), Positives = 152/340 (44%), Gaps = 24/340 (7%) Query: 28 ANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIAPEGDWTLCLN 87 A + L + +S P ++N+L +L ++ + + T G + + P+ + + ++ Sbjct: 38 ATIADLCKELNLSAPKITNLLSDLIADGLIKDYGKVESTGGRKPNLYGLVPDSAFFIGVD 97 Query: 88 VTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL---------LSEIEKCWHRHRKLWPD 138 + I ++N + ++I P L L ++ + + + Sbjct: 98 IKQNHINIGLSNL------QKNLIRITEKIPYHLDNNKESLEALCKLINDFIGELTIPKE 151 Query: 139 HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEK 198 + L + + G+++ TG S + + + ++E K+GIRV ++ND +A E Sbjct: 152 KLLGLGINLSGRINYATGYSYSFF---YFNEEPLSKIIESKIGIRVFLENDSKSMAYGEF 208 Query: 199 WQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGC 257 + E++ +N+D+GIG ++N Q+Y G SG+ GH + + ++C CG+ GC Sbjct: 209 SAGVVEAEKNVLFLNLDHGIGLGILVNGQLYYGKSGYSGEFGHIPMFDNEIICRCGKKGC 268 Query: 258 LETVASLSALKK--QARVWLKSQPVSTQ--LDPEKLTTAQLIAAWQSGEPWITSWVDRSA 313 LET AS AL + + R+ S + +Q D E L +I A + + + Sbjct: 269 LETEASGWALTRMFKERLSEGSSSILSQNNTDTEDLKMEDIINAAIHDDVLAIELIAKIG 328 Query: 314 NAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT 353 + +G + +N+ N ++ + G S A E ++ I+ Sbjct: 329 DNLGRGIALLINLFN-PELVILGGSLAATEEYIRLPIKSA 367 >UniRef50_C7QHP4 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QHP4_CATAD Length = 395 Score = 85.9 bits (211), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 85/351 (24%), Positives = 149/351 (42%), Gaps = 29/351 (8%) Query: 12 HHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE----SQTR 67 ++ ++ LL + +++ +AR +S VS I+ L ++ VV +D + Sbjct: 11 ERSRLAVVRLLRERGTMSRADIARSVGLSRSTVSGIIAALVADDLVVELDAKLAPAGGGA 70 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPK-GEFEYLQIDAPTPQA--LLSE 124 G ++ P + ++ + +AN + + + L + Q + S+ Sbjct: 71 GRPGAAVMLNPASGEAIGVDFGYRHVHVIIANVAHAVRIAKSVRLPVGYDPAQGFDVASD 130 Query: 125 IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGV-SQTMPQAPWTTPVEVKYLLEEKLGIR 183 + + P + + +++ G D GV S MP PV + L +L + Sbjct: 131 LIRTAIDEAGTDPSRILGVGVSVPGPFDTKRGVPSSGMPSRWAGIPVATE--LAARLNLP 188 Query: 184 VMVDNDCVMLALAEK-WQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 V+ D D + ALAE+ W +F + + GIG +FV N Q+ RG G+G+IGH + Sbjct: 189 VLADGDTRLGALAERRWGAARGCDEFVYLKLHGGIGGAFVSNGQLARGINGGAGEIGHLV 248 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDP---EKLTTAQLIA-AW 298 V+ G +C CG GCLET L + + L+P ++LT +I AW Sbjct: 249 VDATGPLCRCGNRGCLETFVGLPVVMR-------------ALEPAYGDRLTLRNVITMAW 295 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 Q I + D A G ++ NILN + + G A GE + + Sbjct: 296 QGDRGCIRALSDAGTMA-GRAVGMLGNILNPQSVIIGGALSAAGELLMGPL 345 >UniRef50_B2A6Y1 ROK family protein n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A6Y1_NATTJ Length = 255 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 62/218 (28%), Positives = 109/218 (50%), Gaps = 17/218 (7%) Query: 138 DHTINLALAIHGQVDPVTG--VSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLAL 195 ++ I L + + G V P+ G + Q + P+ K+ LE+K V+V+ND A Sbjct: 10 NNVIGLGIGVPGFV-PLKGDRIPQLVNMGLENVPL--KFKLEQKFNAHVLVENDANAAAW 66 Query: 196 AEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNP-DGVVCDCG 253 E SQ RD +I + G+GS ++NE I+RG+L +G+IGH +V P DG +C+CG Sbjct: 67 GEHKAGASQGTRDNLLITLGTGVGSGVIVNEAIHRGNLGLTGEIGHILVRPIDGKLCNCG 126 Query: 254 RYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSA 313 + GCLET S A++ +A+ D +LT ++ +G+ + ++ Sbjct: 127 KVGCLETECSGVAIESKAKAL---------YDEHQLTAREVFNRADNGDETAKRVIQEAS 177 Query: 314 NAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIR 351 + + + L++L ++ + G + G N L +R Sbjct: 178 YYLAWGISHALHVLEF-EVVVLGGGISRGGNLLLQPVR 214 >UniRef50_A7VV97 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VV97_9CLOT Length = 406 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 89/356 (25%), Positives = 154/356 (43%), Gaps = 25/356 (7%) Query: 11 RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHS 70 +++ + IL ++ + ++ + ++ S+ V +I+ +L + V D E G Sbjct: 11 KYYKRNKILNIIRSNENISRYDVKKMTMYSMSTVLDIIDDLIASGMVYEADCEEPRVGRK 70 Query: 71 SGTWL-IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCW 129 WL + PEG + + + C A L GE Y + P I Sbjct: 71 P-VWLRLNPEGGYFIGAEFNAFHLHC----AMLDFTGEIIYQSEEDLLPDQGKDAILALL 125 Query: 130 HRH-------RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 RH K P +++ I G ++ ++ + + V VK +LE++ + Sbjct: 126 IRHIHAAIDAVKGKPGQIFAISVGIPGYLNEDKSIALSHFRLKDWENVPVKKILEDEFHL 185 Query: 183 RVMVDNDCVMLALAEKW-QNNSQERDFCVINVDYGIGSSFVINEQIY--RGSLYGSGQIG 239 +DN+ ++A A KW + N RDF +++ G+ VIN + RG L SG++G Sbjct: 186 PCYLDNNVNVMAFAYKWLRYNGDCRDFLFVSIRTGVRIVPVINNHLILSRGGL--SGELG 243 Query: 240 HTIVNPDGVVCDCGRYGCLET-VASLSALKK-QARVWLKSQPVSTQL---DPEKLTTAQL 294 H V P G +C CG GCL + ++ LS L K +A P ++ DP+K+T Sbjct: 244 HVKVAPHGTLCSCGGIGCLNSEISDLSILGKLKAGFEFGRFPEIMEMAGGDPDKVTLEMF 303 Query: 295 I-AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 +A Q + +D AN +G +L +NIL + L G+ GE + I Sbjct: 304 CESAAQEHSDSVKLMLDL-ANILGEALGMAVNILAPEVVVLSGQLAQLGEPFFQEI 358 >UniRef50_C5CH81 ROK family protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CH81_KOSOT Length = 386 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 86/374 (22%), Positives = 173/374 (46%), Gaps = 32/374 (8%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 + R N +L +L +Q ++ L+R+ ++ VS+I++E + I +ES T+ Sbjct: 7 KDTRIKNAITLLHILLKQDGISRVELSRITGLTKTTVSSIIKEFLA----AGIVEESPTK 62 Query: 68 -----GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 G + + I +TL +++ +I+ + +A + E L P ++L Sbjct: 63 PNGNVGKTPISLHIKKNAVYTLGVHLGRHNIKTVLMDASMKVLMESNGLSYKKNDPDSVL 122 Query: 123 SEIEKCWHRHRKLWPDHTIN---LALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 ++ + + H I + + I G +DP TGV + P+ + + ++++K Sbjct: 123 EKLYLDINHIMEKAEKHGIKVGVIGIGIPGPLDPETGVIKCPPKFEGWINIPLGEIIQKK 182 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 + V ++ND + ALAEKW ++ ++F I V+ GIG+ VIN+++Y+G+ G+I Sbjct: 183 YKLPVWIENDANVAALAEKWHGGAKYLKNFVYILVNEGIGAGVVINDELYQGTHDYVGEI 242 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKL-TTAQLIAA 297 GH++ G++ LE + + L Q + S L+ + A L+ A Sbjct: 243 GHSLFYVH------GQFKYLEDLYGVDVLTSQIK--------SCGLNAHSIEDVANLLKA 288 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNP 357 + S V SA + + + N +++LN +++ G A G N+L +++ Sbjct: 289 ---DNKIVYSIVRDSAKWLSIVVLNVIHLLNPQAVFIGGTMAALG-NYLIQPVKEIVSQY 344 Query: 358 FDRDEGPSVKATQI 371 D+ VK ++I Sbjct: 345 LFGDQETDVKLSEI 358 >UniRef50_D2PV61 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PV61_9ACTO Length = 436 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 72/283 (25%), Positives = 120/283 (42%), Gaps = 18/283 (6%) Query: 1 MRACINNQQIRHHNKCVILELLYR-QKRANKSTLARLAQISIPAVSNILQELESEKRVVN 59 +R N ++ N V+L+ + R ++R ++ LA +S A+SNI + L V Sbjct: 10 VRRGTNLDRVGGFNDTVVLDAIRRAEQRLSRVELAAATGLSGQAISNITRRLLDAGLVRE 69 Query: 60 ID-DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP 118 +S G + P G + + +++ P + + + A P Sbjct: 70 AGRQKSAGLGKPRTLLELEPTGQYAVGVHLDPAVVTVVLLDLTGQVIARRRAQTPAADGP 129 Query: 119 QALLSEI---------EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTP 169 L++ I E R R + + +A G +D GV P Sbjct: 130 DVLIAGIAATVEDVIAEAGVPRQR------VVGVGIAAPGPIDVDRGVVVDPPNLTAWHL 183 Query: 170 VEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIY 228 V ++ L ++ G+ V++D D A AEKW R F + GIG+ VI +++ Sbjct: 184 VPLRDALRDRTGLPVLLDKDVTAAASAEKWAGGPNGRGSFVFFYLGTGIGAGLVIGDEVV 243 Query: 229 RGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQA 271 RGS G+IGH IV+P+G +C CGR GC+ + L +QA Sbjct: 244 RGSSSNVGEIGHVIVDPEGPLCFCGRRGCVGESSRPRYLVQQA 286 >UniRef50_C6IY97 ROK family protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IY97_9BACL Length = 399 Score = 85.5 bits (210), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 89/408 (21%), Positives = 177/408 (43%), Gaps = 36/408 (8%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ + Q I+ NK ++L+ + +++ +++ ++ ++ VS+++ EL V I Sbjct: 1 MKITGDQQLIKKMNKTIVLDTIRQRQPLSRADISAAIGLNKATVSSLVSELIDSHLVTEI 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNV-------TPTSIECQVANACLSPKGEFEYLQI 113 + G L + + +++ +E V L P +F Sbjct: 61 GPGESSGGRKPTLLLFNRSAGYAIGIDIRVNDLLAVLVDLEGHVLQEKLVPLSDF----- 115 Query: 114 DAPTPQALLSEIEKCWHRHRKLWPDH---TINLALAIHGQVDPVTGVSQTMPQAPWTTPV 170 +P+ +L +I + + ++ P+ + + + + G VD + V + P W V Sbjct: 116 ---SPEHVLEQIRQTIRQFKEQLPESPYGIVGIGIGVPGLVDDKSRVI-SAPNLDWNK-V 170 Query: 171 EVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYR 229 E+ L + G + +DN+ A+ EK +E ++ +++ GIGS ++ ++YR Sbjct: 171 ELYEPLASEFGANLHIDNEANAGAIGEKLFGAGREAQNLIYLSIGIGIGSGIIVGGELYR 230 Query: 230 GSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSA-LKKQARVWLKSQPVSTQLDPEK 288 G+ SG++GH + +G +C CG GC ET+AS A L + A++W P D E Sbjct: 231 GTSNFSGEVGHMTIAENGPLCRCGNRGCWETLASEKALLDRAAKLWGDKHP-----DLE- 284 Query: 289 LTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNT 348 ++I SG+ ++ +G+ L N +NILN I + R G+ + Sbjct: 285 ----EMIQLAHSGDSRAIELLNEIGAQLGVGLANLVNILNPELIVIGNRLSLAGDLIQDA 340 Query: 349 IIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 ++R +R K + + F L LG + + A L + Sbjct: 341 MLRTI----ENRSLSYHRKKSGVAFANLGIRSTALGAASMPITAFLSE 384 >UniRef50_C5BZR0 ROK family protein n=3 Tax=Micrococcineae RepID=C5BZR0_BEUC1 Length = 393 Score = 85.5 bits (210), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 62/212 (29%), Positives = 90/212 (42%), Gaps = 14/212 (6%) Query: 138 DHTINLALAIHGQVDPVTG-VSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALA 196 D + + L + VD TG +S W + +++ ++L V VDND + ALA Sbjct: 143 DELVGVGLGLPAPVDGATGMISVRGVMRGWDGE-HLAHVMSKRLARPVHVDNDANLGALA 201 Query: 197 EKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRY 255 E S+E D + YGIG+ V+N +YRG +G+IGH V+P G +C CG Sbjct: 202 EHTLGASREHLDSVYVRASYGIGAGVVLNGAVYRGYAGTAGEIGHVQVDPQGAICRCGNR 261 Query: 256 GCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANA 315 GCL+TV AL R LT +IA G+ V + A Sbjct: 262 GCLDTVVGADALLASLRA-----------SHGNLTLRDVIALATDGDRGCARLVADAGEA 310 Query: 316 IGLSLYNFLNILNINQIWLYGRSCAFGENWLN 347 IG + +N + + G GE L Sbjct: 311 IGTVVAGLCAAVNPQVVVVGGELAETGEILLG 342 >UniRef50_B6A233 ROK family protein n=6 Tax=Rhizobiales RepID=B6A233_RHILW Length = 321 Score = 85.1 bits (209), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 56/225 (24%), Positives = 106/225 (47%), Gaps = 9/225 (4%) Query: 118 PQALLSEIEKCWHRHRKLW---PDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKY 174 P +L++I C R L P + + ++ G +D VTGV+ +P P +K Sbjct: 40 PDRVLAQI--CGLADRLLAASKPASVVGVGVSAPGPLDTVTGVATDIPTLPGFVDFPLKA 97 Query: 175 LLEEKLGIRVMVDNDCVMLALAEKWQNNSQE--RDFCVINVDYGIGSSFVINEQIYRGSL 232 L+++ V ++ND + A+ E WQ + + + V GIG + + ++ RG Sbjct: 98 ELQKRFAFPVDLENDAIAAAVGE-WQFGIGKGLDNLVYVTVSTGIGGGVISDGRVVRGRK 156 Query: 233 YGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARV-WLKSQPVSTQLDPEKLTT 291 + +GH V P+G +C CG GC E S A ++A++ ++S+ + + + + Sbjct: 157 GMAAHVGHMSVVPNGELCPCGNRGCFEAYGSGPAFARRAQMRAMESRDTTLGSNGGAIDS 216 Query: 292 AQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 + AA ++G+ VD A +G N ++I + + I + G Sbjct: 217 RSVFAAARNGDRLANQLVDEEAEILGRGFTNLIHIFSPDIIVMGG 261 >UniRef50_C1D0G6 Putative transcriptional regulator, NagC family n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0G6_DEIDV Length = 440 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 95/402 (23%), Positives = 166/402 (41%), Gaps = 29/402 (7%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 A ++ IR + ++L+LL+ + RA + +AR +S A+S+I+ EL V + Sbjct: 7 APLDLAAIRARHTALLLQLLWERDRA-RVDIARDLGMSRSAISSIVSELIG----VGLVQ 61 Query: 63 ESQTRGHSSGTWLIAPEGDWTLC------------LNVTPTSIECQVANACLSPKGEFEY 110 E TRG + + + C+ + P E Sbjct: 62 EGNTRGSGRAGRRATLLSLNARAAALLAIDLGASHVRMDLMDLRCRTLASRTVP---HEV 118 Query: 111 LQIDAPTPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPV 170 + A T LL + R + DH + L + G VD TG P P Sbjct: 119 ISGPAETYHLLL-RLADAVQREAHVPADHVALVGLGVPGPVDQDTGRVIRPPNMPGWDGE 177 Query: 171 EVKYLLEEKLGIRVMVDNDCVMLALAE-KWQNNSQERDFCVINVDYGIGSSFVINEQIYR 229 V+ L+ LG+ V+VDND + A AE ++ + D + GIG+ ++ +++R Sbjct: 178 PVREALQRHLGLEVLVDNDANLGAQAEARFGPHRGVSDLIYVKAATGIGAGVLLGGRLHR 237 Query: 230 GSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKL 289 G G+G+IGH +N G V G G LE+ A+ L A + + DP + Sbjct: 238 GVRGGAGEIGHISINEQGPVGRSGNPGSLESYAAAQVLVATAEARRAAGAPTLLTDP--V 295 Query: 290 TTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 T L+ ++ +P + + +G+++ LN+ N + + GR G +LN Sbjct: 296 TLPALVRHAET-DPLARELWEDVGHHLGVAISTALNLFNPAVVVIGGRLAEAGPVFLNA- 353 Query: 350 IRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVE 391 +R + + R + + T+I L VLG G + ++ Sbjct: 354 VRSSALS---RTMQINAERTRIDLSTLGGDAGVLGAGAMMLD 392 >UniRef50_C7IE75 ROK family protein n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IE75_9CLOT Length = 412 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 75/345 (21%), Positives = 151/345 (43%), Gaps = 14/345 (4%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 IN ++ N+ IL L+YR ++ +A ++ A++ I +L +E +V E Sbjct: 11 INMLGVKIKNRSSILYLIYRSGGISRKEIANKLNLTPAAITLITTDLINEGILVESAVEQ 70 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 L+ + + ++ + Q+ L+ FE A + + Sbjct: 71 NNNRKGRKEILLDINRKKYATIGIYISTNKFQILCMDLNNIVIFEDTVFTADCHKKSSAI 130 Query: 125 IEKCWH--RHRKLWPD-----HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 ++K H ++ D + + +++ G V+ GVS W V V ++ Sbjct: 131 LDKVCTILEHNLIYYDIVRTRTILGVGVSVKGIVNSRAGVSINSYNV-WEDNVNVVEYIQ 189 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 +++ + ++ N+ LA E + N + +D I G+G++ V + + + Sbjct: 190 KRMKVPAILTNNICSLAHGESFFANMEHPKDMLFIKYGPGVGAARVFYQDTLSVYDFNAI 249 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPV-----STQLDPEKLTT 291 Q+GHTI +P+G +C+CG GCLET+A A+++ A L ++ T + E + Sbjct: 250 QLGHTIADPNGAICECGNRGCLETIAGYDAIERNAANILSNKLTPYLFSYTDGNTENINI 309 Query: 292 AQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 +I A+ G+ I +DRS + +++ N + + + I LYG Sbjct: 310 KNIIKAYYDGDKLIEDILDRSIYFLSIAIKNAMCLFDPKSIILYG 354 >UniRef50_C3WAQ8 Predicted protein n=3 Tax=Fusobacterium RepID=C3WAQ8_FUSMR Length = 396 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 78/343 (22%), Positives = 149/343 (43%), Gaps = 19/343 (5%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD-ESQT 66 + I+ N IL L + + +K L+ ++S V+++ L EK + I ES Sbjct: 7 KDIKEKNTSKILNYLRKNEGISKKDLSEGIKLSPSTVTDLCAPLLKEKIIEEIGMLESDK 66 Query: 67 RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFE---YLQIDAPTPQALLS 123 G I + + +++ + N KG+ L+++ P+ L Sbjct: 67 PGRKKVLLKINYDYKKVIGIDIKKNKTTIIITNL----KGDILNKIILELENQEPEKYLK 122 Query: 124 EIEKCWHRH---RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 ++ + + K+ + + + + G VD V G + W V +K + E+K Sbjct: 123 QLLEYLEKFLLDTKISFTEILGIGIGVVGAVDSVEGKTIDFI-GFWNEEVFLKKIFEKKF 181 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + ++V N+ LA+ + + NN DF ++ G+G S VI ++++ SG++GH Sbjct: 182 NVPIIVSNNVKNLAIQQMFINNDL-NDFFLLKYGIGVGGSLVIGGELFKKDSAFSGEVGH 240 Query: 241 TIVNPDGVVCD-CGRYGCLETVASLSALKKQARVWLKSQ--PVSTQL---DPEKLTTAQL 294 +IV D +C C R GC E S AL K+ + S+ P+ L D + + ++ Sbjct: 241 SIVIDDNEICPICKRRGCFENNFSEKALIKKVKKIFNSEKMPILYNLAKGDEKNIDFKKI 300 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGR 337 + A GE I ++ ++ +G+ L N + +I L G Sbjct: 301 LKAGSLGENEILILLEEASKYLGIILLNMFTLFYPKKIILCGE 343 >UniRef50_A7VWZ1 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWZ1_9CLOT Length = 394 Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 78/355 (21%), Positives = 153/355 (43%), Gaps = 31/355 (8%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 + +R N +++ L+ + +++ L++ + + +++I+ L V+ R Sbjct: 12 KDLRESNIALVINLMRKFGICSRAELSKASGLVQSTITSIIDSLIKAGIVIETGSLVGGR 71 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEK 127 G S + E L + VT +S A + GE + L+ ++ ++E Sbjct: 72 GRRSIGIRLNTEKLIVLGIRVTRSSYTL----AIIDIFGELKNLE-----KHSITKDLED 122 Query: 128 CWHRHRKLWPDHT---------INLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 R L T + + +A+ G S + W + K E Sbjct: 123 PSVFERILEDASTFLLKNDQKPVGVGMALPGPYLINEDTSLFLTNQGWKSFTFTKKF-ES 181 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQ--ERDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 +L + V V+ D + A+ E W NS+ + ++ G+G+ V++ +I RG+L +G Sbjct: 182 RLHLPVFVEQDSNVGAMGEWWFGNSEIGQGTKVFVSTGDGVGAGIVVDGKIQRGALGAAG 241 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 +IGH +N +G C CG GCLE S A+ K A+ S+P+ L L+ Sbjct: 242 EIGHMSINFEGPQCQCGNKGCLELYCSEKAILKAAKCL--SKPI--------LNFESLVT 291 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIR 351 +++G +T V+R+A G+ + N + N + + G G+++L+ + R Sbjct: 292 EYRAGNSAVTEIVNRAAEMFGIGIANIAYLFNPGVVVVGGSYKKLGDSFLDQVNR 346 >UniRef50_UPI00016C4534 transcriptional repressor n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C4534 Length = 388 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 82/338 (24%), Positives = 141/338 (41%), Gaps = 19/338 (5%) Query: 18 ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIA 77 +L ++ + +++ +AR + +S P VS ++ L + D TRG + +A Sbjct: 20 VLRVIQSRGSLSRAEVARESGLSAPTVSKAVESLLKAGLIEATDAPELTRGRPAPKLRLA 79 Query: 78 PEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWP 137 L V C+V + L G + PTP I+ R Sbjct: 80 TTSAQVL--GVAIDVCHCEVVSTGL--DGALRDDTLTVPTPATYPELIDALTRAARTFMA 135 Query: 138 D---HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLA 194 T+ L +++ G VD G P T L E+LGI V + L Sbjct: 136 RPGVTTLGLGVSLPGLVDYRKGCGVLSPNVAITNNHCPAADLAERLGIECTVLQESHALC 195 Query: 195 LAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH-TIVNPDGVVCDC 252 LAE+ ++ DF +++V G+G + ++ +G +G+IGH T V G C C Sbjct: 196 LAERHYGLAKGLDDFALLDVGAGVGLGIMSGGRLLKGRSGLAGEIGHFTAVPVGGRRCGC 255 Query: 253 GRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRS 312 G GCLETVAS SAL WL SQ + ++ + ++I +SG +++ + Sbjct: 256 GNTGCLETVASDSAL-----AWLASQKLGRTVNVD-----EVIDLARSGSVDLSAELREV 305 Query: 313 ANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTII 350 A + + L +N+ N ++++ E T++ Sbjct: 306 AGFVAVGLAAVINLFNPATVFIHTPLFEIDEALFGTVV 343 >UniRef50_D1AGC1 ROK family protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AGC1_SEBTE Length = 390 Score = 84.3 bits (207), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 81/339 (23%), Positives = 153/339 (45%), Gaps = 26/339 (7%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGH 69 I++ N+ +ILE + + + ++S LA++ ++ +S+ + +L EK ++ E+ + G Sbjct: 9 IKNINRAIILEEIIKNEPVSRSDLAKITGLNKVTISSQISDLLDEKLLIEKKSEN-SPGT 67 Query: 70 SSGT----WLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEF---EYLQIDAPTPQALL 122 S G + + ++L L + SI + N GE E + +P+ + Sbjct: 68 SGGKKPILLFLNKKCAYSLGLELKKDSISSVLTNL----NGEITQKEAFSVKKTSPEFIA 123 Query: 123 SEIEKCWHRHRKLWPDHT---INLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 +IE+ + + K + I L++ +HG++D + W + +K +L++K Sbjct: 124 DKIEEIFKYYTKSIKNSKFGIIGLSVGVHGKIDK-NNIIIECNNLKWKN-INLKKMLQKK 181 Query: 180 L-GIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 + + + N+ LAEK + F +N+ GIG VI+ I G SG+ Sbjct: 182 FPDLNINIKNNNYFSVLAEKSFYDIPNDPFIFLNMSAGIGMGIVIDNNILLGVNGLSGEA 241 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH + +G C CGR GC ET A +A K + LK + +S + L ++ Sbjct: 242 GHVSIELNGRKCYCGRRGCWETYACENAFFKDLK-ELKKKNISYDKFSKMLDNNEI---- 296 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGR 337 + IT+ + N I L + +NI + I +Y R Sbjct: 297 ---DEEITALLADYENYIYSGLLSIINIFDPKLILIYNR 332 >UniRef50_UPI0001C3141A ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3141A Length = 397 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 94/380 (24%), Positives = 159/380 (41%), Gaps = 22/380 (5%) Query: 11 RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHS 70 R N+ +L LY + ++ LA +S P VS + EL V +D G Sbjct: 12 RQTNRFKVLRALYEHPGSTRTELAADTGLSRPTVSTVTDELVQAGIVAQHEDTQPRTGRP 71 Query: 71 SGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKG-EFEYLQID-APTPQ-ALLSEIEK 127 +A + + L++ ++ V++ G E +D AP L E+ Sbjct: 72 PVLLSLASGAAYAVGLDMGHAHVQVAVSDLSGQILGHERSAADVDHAPVESFDLAGELVH 131 Query: 128 CWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVD 187 + D I + +A+ VD TG P V+ +E +L + VMV Sbjct: 132 GALGQAGVPLDRVIGVGMALAAPVDRATGTVFADGILPSWGRVQPAIEMEARLDLPVMVH 191 Query: 188 NDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPD 246 ND + AL E ++ + + + G+G V+ + Y G+ +G++GH V P+ Sbjct: 192 NDANLGALGEHVFGAGRDVAEMMYVRLSAGLGLGLVLGGRPYGGTSGVAGELGHVRVAPE 251 Query: 247 GVVCDCGRYGCLETVASLSALKKQARVWLKS--QPVSTQLDPEKLTTAQLIAAWQSGEPW 304 G++C CG GCLETVAS +A+ AR+ S +PVS + +L+ G+ Sbjct: 252 GLICRCGNRGCLETVASSTAV---ARLLAHSRDEPVSVE---------RLLELVADGDRG 299 Query: 305 ITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGP 364 V + +G +L +N+ N I + G A G+ L + +T + + P Sbjct: 300 ARRAVAEAGKTVGEALATVVNLFNPELIIVGGDLAAGGDALLAPL--RTAIDEY--AVAP 355 Query: 365 SVKATQIGFGQLSRAQQVLG 384 + A + G L +VLG Sbjct: 356 AAGAVTVSLGALGDKAEVLG 375 >UniRef50_B5I1X5 ROK domain-containing protein n=8 Tax=Streptomyces RepID=B5I1X5_9ACTO Length = 408 Score = 84.0 bits (206), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/260 (26%), Positives = 111/260 (42%), Gaps = 24/260 (9%) Query: 135 LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLA 194 LWP LA+A+ G V P W ++ LL + L + V N+ A Sbjct: 163 LWP---AGLAVAVPGLVARDVRTVVRAPNLDWHD-TDLGALLPQDL--PLTVGNEANFGA 216 Query: 195 LAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGR 254 LAE W + DF ++ + GIG++ V++ Q+ RG+ +G++GH V+PDG C CG Sbjct: 217 LAELWLGDGTPHDFLHVSAEIGIGAALVVDGQLLRGTRGFAGELGHVPVHPDGPRCPCGG 276 Query: 255 YGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSAN 314 GCLE A A+ + A L+P + L G+ + + + Sbjct: 277 RGCLEQYAGEEAVLRAA-----------GLEPGEDRVGLLAQHAADGDEAVRGALREAGQ 325 Query: 315 AIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFG 374 A+G++L +N+L+ + L G WL +R R GP+ + G G Sbjct: 326 ALGIALTGAVNLLDPEAVVLGGALAGL-APWLLPSLRD---ELARRTAGPACPVSVSGLG 381 Query: 375 QLSRAQQVLGIGYLYVEAQL 394 +LG + V A L Sbjct: 382 SQG---PLLGAAHSVVRAVL 398 >UniRef50_B5GKQ2 ROK family transcriptional regulator (Fragment) n=1 Tax=Streptomyces sp. SPB74 RepID=B5GKQ2_9ACTO Length = 446 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 56/197 (28%), Positives = 91/197 (46%), Gaps = 12/197 (6%) Query: 142 NLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQN 201 + L++ G VD G + P V LEE+ G+ +VDND +A+ E+ Sbjct: 152 GVGLSLPGPVDAAAGAVVLPSRMPGWNRFPVADWLEERFGVTAVVDNDANCMAVGEQSVR 211 Query: 202 NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDG--VVCDCGRYGCLE 259 + R ++ + IG+ + + ++YRG+ +G I H V+ G V C CG GCLE Sbjct: 212 PAGHRQSIMVKIGSAIGAGVIADGRLYRGATGAAGDITHIRVDAGGADVPCSCGNTGCLE 271 Query: 260 TVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLS 319 TVAS +AL + R LD +T ++ +P T V R+ + +G Sbjct: 272 TVASGAALVRILR--------ERGLD--VTSTEDVVRLAGDADPEATRAVRRAGDHLGQV 321 Query: 320 LYNFLNILNINQIWLYG 336 L +N N + ++L G Sbjct: 322 LAANVNFFNPDAVYLGG 338 >UniRef50_Q44406 Xylose repressor n=4 Tax=Clostridia RepID=XYLR_ANATD Length = 399 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 83/363 (22%), Positives = 168/363 (46%), Gaps = 17/363 (4%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N+ ++ NK ++L+ + K +++ +++L ++ VSN+ EL E VV Sbjct: 3 NHTLLKQINKLLVLKTILDNKIISRTKISKLVDLNKATVSNLTDELIKEGYVVEKGYGKS 62 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA----- 120 G + + + +++ I ++N E EY + + Sbjct: 63 KGGRRPVLLQVNKDVGSIIGIDLGVDYIHIILSNFVGEVIFE-EYANMKIGEDKEKLLRL 121 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 L IEK + + P + + + + G ++ +G P W V ++ ++++K Sbjct: 122 LFDLIEKSVKKAPQ-TPKGILGIGIGVPGIIEKESGTVLLAPNLKWQN-VPLRSIVQQKF 179 Query: 181 GIRVMVDNDCVMLALAEKWQNN-SQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 + V +DN+ AL EKW + D ++V G+G+ +I+ +++RG+ +G++G Sbjct: 180 NLPVYIDNEANAGALGEKWFGEWGKVSDLIYLSVGIGLGAGIIIDNKLFRGAAGFAGEVG 239 Query: 240 HTIVNPDGVVCDCGRYGCLETVAS----LSALKKQARVWLKSQPVSTQLDPEKLTTAQLI 295 HT +N VC CG GCLE AS LS +KK + ++ + +S + + +++T +++I Sbjct: 240 HTTINFQDDVCSCGNIGCLENFASERALLSVIKKLVKQGVEDRYISWE-NVDEITPSRII 298 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNT---IIRQ 352 A + G + A +G+ + N +NI N + + ++ FGE +L +I Q Sbjct: 299 QAAKEGSRVCRMAILEVAEKMGIGVANLVNIFNPEMVIIGNKASFFGELFLEKLREVINQ 358 Query: 353 TGF 355 F Sbjct: 359 RSF 361 >UniRef50_Q9KCZ4 Glucokinase n=101 Tax=Bacillales RepID=GLK_BACHD Length = 330 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 70/231 (30%), Positives = 107/231 (46%), Gaps = 8/231 (3%) Query: 125 IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184 ++K H K D I + L G ++ TG W +K LEE+ + V Sbjct: 52 LDKRLSGHHKSKSD-LIGIGLGAPGFIEMDTGFIYHAVNIGWR-DFPLKDKLEEETKLPV 109 Query: 185 MVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV 243 +VDND + AL E W+ ++ +I + G+G V N I G +G+IGH V Sbjct: 110 IVDNDANIAALGEMWKGAGDGAKNMLLITLGTGVGGGIVANGNILHGVNGMAGEIGHITV 169 Query: 244 NPDGVV-CDCGRYGCLETVASLSALKKQARVWLKSQPVS-TQLDPEK---LTTAQLIAAW 298 P+G C+CG+ GCLETVAS + + + A + S LD +K LT + +A Sbjct: 170 IPEGGAPCNCGKTGCLETVASATGIARIATEGVTEHKESQLALDYDKHGVLTAKDVFSAA 229 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 + + + S VD A +G ++ N N LN +I + G G+ L I Sbjct: 230 DASDAFALSVVDHIAYYLGFAIANLANALNPEKIVIGGGVSKAGDTLLKPI 280 >UniRef50_UPI0001C357A7 transcriptional repressor n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C357A7 Length = 405 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 82/399 (20%), Positives = 166/399 (41%), Gaps = 40/399 (10%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSN-----ILQELESEKRVVNI 60 N +++ N+ +I E++Y+ ++S +A + ++ P ++ I + L E + Sbjct: 7 NLPRVKKQNEALIKEIIYKYGPISRSKIAEMLSLTPPTITTNVTSLIERGLVYEFAADDS 66 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 D E ++ G E + + + + P A L +G + P + Sbjct: 67 DVEERSLGRKPVKINFVQEAKYAVGVEMNPY----HTAICMLDLRGNEKISMRYPPMNRT 122 Query: 121 LLSEIEKCWHRHRKLW------PDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKY 174 + E++ KL P+ + + + + G V+P GV + + W + Sbjct: 123 YVEEMDVLARNINKLIQDSGTEPEKILGVGVGLPGFVEPDVGVLRESFKTEWNGK-NIAR 181 Query: 175 LLEEKLGIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLY 233 L +L + V+++N+ + A+ E+ + D F + YGI + ++ G Sbjct: 182 DLSRRLDLPVLIENNARVRAIGEEMFGKTLRPDSFAYYLISYGIACPLFVKNRMITGDNA 241 Query: 234 GSGQIGHTIVNPDGVVCD-CGRYGCLETVASLSALKKQARVWLKSQPVSTQL-----DPE 287 +G+ GH +V+ +G C+ CG GCLE +AS A+ K+ + ++ VST L D E Sbjct: 242 SAGEAGHMVVDINGPKCETCGHNGCLEELASERAIIKKCKAAARAG-VSTMLTELCPDIE 300 Query: 288 KLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNIL----------------NINQ 331 LT ++ A + + ++ ++ + +G++L N +N++ N Q Sbjct: 301 GLTMKDVLMAEECNDAYVVKVMEEAVMYLGVTLANIINLISPPLVIVDGYMMKVKRNRRQ 360 Query: 332 IWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQ 370 + + FG N I FNP G + A + Sbjct: 361 LLEETKKHIFGLNDQEIEIEFIDFNPLTGARGGAALAIK 399 >UniRef50_C7QJQ5 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QJQ5_CATAD Length = 390 Score = 83.2 bits (204), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 94/347 (27%), Positives = 153/347 (44%), Gaps = 43/347 (12%) Query: 14 NKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGT 73 + +L LL R+ +++ +A + ++S ++ + L +E +V E R + G Sbjct: 13 TRTAVLALLARRGPLSRAQIAEMLELSPATITQGTRRLLAEGLLV----EEAPRPSAGGG 68 Query: 74 WLIAPEGDWTLCLNVTPTS---IECQVANACL-------------SPKGEFEYLQIDA-P 116 G ++ L++ P S I QVA+ + S + F+ DA Sbjct: 69 ------GRPSVPLSLVPGSAHTIGIQVAHEHVTGVTSRLDATVVHSFRHAFDPASPDAVE 122 Query: 117 TPQALL-SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 T AL+ SEIE+ R L + +A+ G V+P TG + WT + + Sbjct: 123 TLTALIRSEIEEIERRGLPLA-----GVGVAVPGIVEPETGTLSMSVRLGWTG-LPLAAR 176 Query: 176 LEEKLGIRVMVDNDCVMLALAEK-WQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYG 234 L E LG+ V VDND + AE+ + + E DF + + GIG V++ YRG+ Sbjct: 177 LREALGVPVFVDNDISAVTAAERLYGPGADEADFLLAAIGQGIGLGMVLDGAPYRGAAGA 236 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQL 294 +G+ GH V PDG C CG GCLE++ S AL + A P + LD L Sbjct: 237 AGEFGHMPVQPDGPQCVCGNRGCLESLVSTEALLRTAH-EAGILPAESDLD-------DL 288 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAF 341 A + G+P + +A +G +L +N+L + + G A Sbjct: 289 GTAARHGDPAAVQLLHNAATLLGRALAGVVNLLGPRSVIIIGEITAI 335 >UniRef50_P0AF22 N-acetylglucosamine repressor n=95 Tax=Gammaproteobacteria RepID=NAGC_ECO57 Length = 406 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 85/345 (24%), Positives = 154/345 (44%), Gaps = 27/345 (7%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N ++ N + L+ + ++ +A +Q++ +V+ I ++L + +D ++ Sbjct: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPK--GEFEYLQIDAPTPQ---- 119 T G + + I E + V + + LS K E Y P P+ Sbjct: 71 TGGRRAIS--IVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHY-----PLPERTQQ 123 Query: 120 ----ALLSEIEKCWHRH-RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTT--PVEV 172 ALL+ I + + RKL I +++ + G VDP +G MP VE Sbjct: 124 TLEHALLNAIAQFIDSYQRKLR--ELIAISVILPGLVDPDSGKIHYMPHIQVENWGLVEA 181 Query: 173 KYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGS 231 LEE+ + V +D LALAE + SQ+ D ++ V G G+ + N +I+ G Sbjct: 182 ---LEERFKVTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGR 238 Query: 232 LYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTT 291 G+IGH V P G C CG +GCLET+A+ +A++++ LK Q +++ + T Sbjct: 239 NGNVGEIGHIQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLK-QGYQSRVPLDDCTI 297 Query: 292 AQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 + A G+ + ++ +G ++ +N+ N +I + G Sbjct: 298 KTICKAANKGDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAG 342 >UniRef50_C2CV09 NagC/XylR family transciptional regulator n=1 Tax=Gardnerella vaginalis ATCC 14019 RepID=C2CV09_GARVA Length = 370 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 74/270 (27%), Positives = 124/270 (45%), Gaps = 17/270 (6%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 + IR N+C +L LLY ++S +A+L IS + S +++ L S+ V E +T+ Sbjct: 17 EDIRKKNRCNVLNLLYSNYILSRSDVAKLTGISKSSASAVVESLISDGLV----KEGKTK 72 Query: 68 GHSSGTWLIAPEGDWTLCLN-----VTPTSIECQVANACLSPKGE-FEYLQIDAPTPQAL 121 S T P LC N V + E + A + G E +Q L Sbjct: 73 ---SATCPGKPAVLLHLCENSRQIIVVDIAGENTIVGAITNLVGNVIERIQTPIRLDDKL 129 Query: 122 -LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 + +I RK + + ++ G +D G + P W V + L + Sbjct: 130 SVDDIVSLIVDLRKKTTAPLLGIGISSPGVIDD-EGKILSAPHLGWKN-VTLADDLRKIF 187 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + V VDN+ AL EK N + I + G+G+ +I+ +I G + +G+IGH Sbjct: 188 NVPVRVDNNANAAALGEKQLANGSS-NLIYIQIARGVGAGTLISNKIVDGGKFTAGEIGH 246 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQ 270 +V+ DG++C CG+ GCLET+ S+ L+++ Sbjct: 247 VVVDEDGLLCRCGKRGCLETLISIPRLQQR 276 >UniRef50_Q185Y3 Putative regulator of a specific sugar metabolism n=6 Tax=Clostridium difficile RepID=Q185Y3_CLOD6 Length = 404 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 86/380 (22%), Positives = 168/380 (44%), Gaps = 21/380 (5%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N + ++ NK +IL+LL ++ LA+ ++ +SN++ EL +E + I+ S Sbjct: 9 NIKDVKIKNKLIILKLLSTNTPMSRVDLAKSTGLTKMTLSNLVTELINENMIREIE-SST 67 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTP----TSIECQVANACLSPKGEFEYLQIDAPTPQAL 121 HSSG I + N++P I + +S Q+ P+ L Sbjct: 68 LNAHSSGRKPILLDIS-----NISPCICGILIRRNICKVIISDLKGNIVKQLSETYPKCL 122 Query: 122 LSE-----IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 ++ I++ + + K+ I + ++ G VD + G P + + + + Sbjct: 123 SNDVLKDIIKRMFTKIMKINKRDIIGIGISSIGPVDDINGTILNPPDFGNVSNLNIVDFI 182 Query: 177 EEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 +E + + + ND ALAEK + ++ +++ GIG+ V+ +++ G+L S Sbjct: 183 KEMSDLPIFLINDANSGALAEKMYGLGKNISNYIYLHIMNGIGAGLVLENKLHTGNLGQS 242 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLI 295 G+IGHT +N G +C CG GCL+ S+S L K+ P S ++ + + +LI Sbjct: 243 GEIGHTSINFSGPLCSCGNNGCLDYYTSVSNLIKRIESLSHIYPNSPLINCKDFSLVKLI 302 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWL---YGRSCAFGENWLNTIIRQ 352 + + +D + +L N L +++ + I + + F EN L + + Sbjct: 303 DEANNKDSLAMFLLDEFCTYVSYALVNTLTLIDCSSIIIGYDFNIPGTFIENTL--LKKL 360 Query: 353 TGFNPFDRDEGPSVKATQIG 372 T F + + SV+ + G Sbjct: 361 TASASFSKYKKISVRHSNFG 380 >UniRef50_C2CVT4 Transcriptional regulator n=1 Tax=Gardnerella vaginalis ATCC 14019 RepID=C2CVT4_GARVA Length = 379 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 78/333 (23%), Positives = 148/333 (44%), Gaps = 40/333 (12%) Query: 11 RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHS 70 R +N+ +I L+ ++ +++ L R ++S ++S ++ E+ + +V ES+ Sbjct: 27 RINNRMLIFNYLFPKQILSRAMLVRKTKLSKASISTVVYEMLEDHILVESGQESKIERGK 86 Query: 71 SGTWLIAPEGDWTL-CLNVT-PTSIECQVANAC--LSPKGEFE-YLQIDAPTPQALLSEI 125 GT L W + ++++ P I+ V N C + + E Y DA + + E+ Sbjct: 87 KGTLLEVDANYWNIITIDLSQPCLIQGAVVNLCGDILKRSEISLYKSTDANCEKII--EV 144 Query: 126 EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVM 185 K + +H + + +A+ G VD V ++ W + +K L + ++ Sbjct: 145 CKTLINNSN---NHILGIGIAVPGIVDDEGRVVRS-SNLQWEN-INIKEELIKHFNCPII 199 Query: 186 VDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNP 245 VD+D LAE++ N I + G+G+S +IN+ I G +G+IGH V+P Sbjct: 200 VDHDTNSALLAERFFGNGVPNTI-FIQLSLGVGASILINDAIITGINNSAGEIGHITVDP 258 Query: 246 DGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWI 305 G C CG+ GCLET S L ++ ++ PE + Sbjct: 259 QGPDCSCGKKGCLETYISAETLHRKM--------FTSNRKPEDI---------------- 294 Query: 306 TSWVDRSANAIGLSLYNFLNILNINQIWLYGRS 338 + + N +G +L +N+L++ + +YG S Sbjct: 295 ---LAEAGNYLGKALTTTINLLDLTDVVIYGPS 324 >UniRef50_Q7MLY6 Transcriptional regulator n=62 Tax=Gammaproteobacteria RepID=Q7MLY6_VIBVY Length = 435 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 54/217 (24%), Positives = 109/217 (50%), Gaps = 3/217 (1%) Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 LL EIE+ + + D ++A+ + G V+ G+ MP + + + + Sbjct: 157 LLHEIEEFFQTYADQL-DRVTSIAITLPGLVNSEQGIVLQMPHYNVEN-LALGPEIYKAT 214 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQERDFCV-INVDYGIGSSFVINEQIYRGSLYGSGQIG 239 G+ V + ND ALAEK +SQ + V I++ +G+G+ +++ ++ +G G++G Sbjct: 215 GLPVFIANDTRAWALAEKLFGHSQGNENSVLISIHHGLGAGIILDGRVLQGRHGNIGELG 274 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 H ++P G +C CG GCLETVAS A++++ + + S + E +T + A Sbjct: 275 HIQIDPQGKLCHCGNRGCLETVASSKAIREEVMERIANGESSILEELEDVTIESICEAAA 334 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 +G+ +++ +G ++ +N+ N ++ + G Sbjct: 335 NGDALAVDVIEKLGRYLGSAIAIVINLFNPEKVLIGG 371 >UniRef50_Q8EL07 Transcriptional repressor of the xylose operon n=1 Tax=Oceanobacillus iheyensis RepID=Q8EL07_OCEIH Length = 402 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 79/346 (22%), Positives = 156/346 (45%), Gaps = 22/346 (6%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N + I+ N+ +IL+ + ++ ++S +A+ IS V+ + EL E ++V D Sbjct: 6 NLKLIQELNRSLILDTIRKKGPISRSDIAKKLTISPTTVTTAVSEL-IEGKIVYEDGVGN 64 Query: 66 TRGHSSGTWL-IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQI----DAPTPQA 120 + G L P+ + +++T + I ++A L K + + ++I Sbjct: 65 SNGGRKPVLLRFNPDTHSIIGVSITNSKI--KIAEMNLEGKVKKKSVEITNNEQGEDIIK 122 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTG-VSQTMPQAPWTTPVEVKYLLEEK 179 L+ E K + ++ K+ D+ +++ G V+ G +S + P+ K ++E Sbjct: 123 LVIETLKTFIKNEKVNLDYCEGVSIITPGIVNSEEGCISYNSHLGLYNIPL--KKMVEST 180 Query: 180 LGIRVMVDNDCVMLALAEKWQNN-SQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 +G+ ++ND AE + + + + + GIGS +IN+ IY+G +G+I Sbjct: 181 IGLPTFLENDVNAFVSAESYFGSYNHYNSILFLTIGDGIGSGIMINDSIYKGYKGSAGEI 240 Query: 239 GHTIVNPDGVVCDCGRYGCLETVAS--------LSALKKQARVWLKSQPVSTQLDPEKLT 290 GHT V P G+ C CG GC+E + +SA+ + R L + D K+T Sbjct: 241 GHTTVVPGGIKCKCGNSGCVENYVNWPSIHSRIVSAIITKGRDTLIKNYIGN--DFTKIT 298 Query: 291 TAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 + A + + +D N + +++ N ++ L+ I L G Sbjct: 299 PDMFVLAIRENDELCKEIMDDMVNYLSITIVNAIHTLSPELIILSG 344 >UniRef50_D2EZG3 ROK family protein n=4 Tax=Bacteroides RepID=D2EZG3_9BACE Length = 313 Score = 82.8 bits (203), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 60/214 (28%), Positives = 101/214 (47%), Gaps = 9/214 (4%) Query: 136 WPDHT-INLALAIHGQVDPVTGV-SQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVML 193 W D + + + + G+VDP GV Q P T +E+ L + G+ +DND Sbjct: 58 WYDQKPVAMGVGLIGRVDPNEGVWLQIDPSR--TQRIELAKELSDIYGMPCHIDNDVKSA 115 Query: 194 ALAEK-WQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPD-GVVCD 251 AE+ W ++F +NV GI VIN + RGS + +G++GH V + G+ C Sbjct: 116 TRAERVWGFGQISKNFIYVNVGTGIAVGTVINGRQIRGSHFNAGEVGHVRVGVNIGIKCG 175 Query: 252 CGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEK---LTTAQLIAAWQSGEPWITSW 308 CGR C+E +A+ AR+ + EK + +++ A Q G+P T Sbjct: 176 CGRMDCVEAIAAGIGFDNCARLLRNQYETGLHIPAEKGERVIVSEVFALSQKGDPLCTVL 235 Query: 309 VDRSANAIGLSLYNFLNILNINQIWLYGRSCAFG 342 V+ +A A+ + N + +++ + + L G A G Sbjct: 236 VENAAEALANLIMNLVRVIDPDTVVLGGGIVADG 269 >UniRef50_B0MNG8 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MNG8_9FIRM Length = 316 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 49/176 (27%), Positives = 86/176 (48%), Gaps = 5/176 (2%) Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVI-NVDYGIGSSFVINEQIYRGSLYG 234 L E G R++++ND + A E ++ V+ + G+G+ +IN +IY GS Sbjct: 99 LAEYFGKRIILENDANVAAYGEYLAGAAKGAKNAVVLTLGTGVGAGIIINGEIYSGSNNA 158 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQP---VSTQLDPE-KLT 290 G+IGHT++ DG C CGR GC E +S + L + R ++ P + +D + K++ Sbjct: 159 GGEIGHTVIEVDGAPCTCGRNGCFEAYSSATGLVRMTREMIEKYPSGRLHEMVDRDGKIS 218 Query: 291 TAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWL 346 A + G+P VD+ + + N +N+ + + + G C G+N L Sbjct: 219 ARTAFNAAKLGDPEGREVVDKYIKYLACGITNVINVFQPDILCIGGGVCNEGDNLL 274 >UniRef50_Q0FFU4 Xylose operon repressor n=6 Tax=Rhodobacterales RepID=Q0FFU4_9RHOB Length = 421 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 78/330 (23%), Positives = 146/330 (44%), Gaps = 16/330 (4%) Query: 18 ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ--TRGHSSGTWL 75 I EL+ R ++ +AR IS +V+ + EL S+ + +++ S+ +RG Sbjct: 37 IFELVRATGRIARAKIARTLDISPGSVTALTAELISDGFLREVEETSRETSRGRPPVALE 96 Query: 76 IAPEGDWTLCLNVTP---TSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHR- 131 + P+ + + + ++ T+ L+ + D + LL+E E + Sbjct: 97 LVPDALYVIGVKLSDELHTATLTDFGGNALASASQIT--TADKKSADELLTETEAIIRKV 154 Query: 132 --HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQ-APWTTPVEVKYLLEEKLGIRVMVDN 188 K+ + + I G V+ TGV P TP+ + V +DN Sbjct: 155 CKSAKISQKKISAIGVGISGIVNYETGVVAWSPLLEELDTPL--GDIFSTYFKTPVCIDN 212 Query: 189 DCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDG 247 D +L LAE W + +F VI +++G+G FV + +++RG+ ++GH+ V DG Sbjct: 213 DANVLTLAELWFGAGRALSNFAVITIEHGVGMGFVSDNRLFRGAHSMGLELGHSKVQLDG 272 Query: 248 VVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITS 307 +C CG+ GCLE + AL ++A L + P S + D + L + G+ Sbjct: 273 ALCRCGQRGCLEAYLADYALAREASTALIT-PSSKRQDLNDYLKS-LYEMAKLGDQASLK 330 Query: 308 WVDRSANAIGLSLYNFLNILNINQIWLYGR 337 R+ + ++L N +++ + I L G+ Sbjct: 331 IFKRAGRYLAVALSNIIHLFDPKLIILSGK 360 >UniRef50_B6QX20 Putative uncharacterized protein n=1 Tax=Pseudovibrio sp. JE062 RepID=B6QX20_9RHOB Length = 342 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 70/302 (23%), Positives = 127/302 (42%), Gaps = 39/302 (12%) Query: 51 LESEKRVVNIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEY 110 +E E ++ + +++ RG + + + P G L + V P +I C + N L + Sbjct: 1 MEGEALILAGERQTKGRGLPAVQYTLNPAGAVALGVEVRPNAILCALVN-FLGDTLYTKR 59 Query: 111 LQIDAPTPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWT--- 167 + I + P +L ++ D ++ +I PV G MP P+ Sbjct: 60 IHIKSSEPAVVLPAVKAAC--------DEALS---SIGKNAPPVLGAGIVMP-GPFGRVG 107 Query: 168 ------------TPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVD 214 + + L E+ L + V V+ND A+AE+ ++ E + FC + Sbjct: 108 LTGAGKAELVGWDDKDPQALFEDVLQVPVRVENDATAAAIAEQTTGSATELQSFCFVYFG 167 Query: 215 YGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVW 274 G+G + N +I RG+ +G++GH +V G +C CG GCLET S A + + Sbjct: 168 TGLGLGVISNGEILRGAFGNAGELGHVVVERGGRLCSCGNRGCLETYTSRMAASEFLQKR 227 Query: 275 LKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWL 334 KS +Q D L A +P + W+ +A+ + ++ N+ + + L Sbjct: 228 GKS--AESQKDLSDLLAAN--------DPDLEEWISEAADPLAQAIGTLENLFDPEAVIL 277 Query: 335 YG 336 G Sbjct: 278 GG 279 >UniRef50_C7PY53 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PY53_CATAD Length = 422 Score = 82.4 bits (202), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 92/365 (25%), Positives = 149/365 (40%), Gaps = 40/365 (10%) Query: 13 HN--KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD-------- 62 HN + IL+ L R +++ L R ++ VS+++ +L S V D Sbjct: 19 HNLGRVRILQALTSHARLSRADLVRHTGLARTTVSSVIFDLISAGLVRESPDVRENSDTA 78 Query: 63 --------ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPK-GEFEYLQI 113 Q G + PE + + L+V + V + +P+ E L + Sbjct: 79 AAAAAGAAPGQRTGRPPLLLRLEPEAAYAVGLDVGHDHVRAIVTDVVGTPRWDRTEALAV 138 Query: 114 DAPTPQALLSEIEKCWH--RHRKLWPDHTINLALAIHGQVDPVTG---VSQTMPQAPWTT 168 D +AL + + + + P + L L I VD TG MP T Sbjct: 139 DDDPRRALDTAVRLIAEAVKDTAVPPHKILGLGLGIACPVDKTTGGLHAEGIMPGWVGTR 198 Query: 169 PVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCV-INVDYGIGSSFVINEQI 227 P + L E+ G+ + ND LAE+ ++E V + + GIG+ + ++ Sbjct: 199 PADD---LAERTGLPTQIINDANAGVLAERRFGAAREATNVVYVRLAAGIGAGMMSEGRM 255 Query: 228 YRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKK-QARVWLKSQPVSTQLDP 286 G +G++GH +V +G VC CG GCLETVAS +A+ AR W QP + P Sbjct: 256 LLGHHGLAGELGHVMVELNGAVCRCGSRGCLETVASPAAIAGLLARSW--GQPADSIDLP 313 Query: 287 EKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWL 346 E L + G+ V+ + A+G +L + +LN + + G GE L Sbjct: 314 ELL---------RRGDRGALRVVEDAGEAVGRALSAAVQLLNPQLVVIGGDLAEAGEALL 364 Query: 347 NTIIR 351 I R Sbjct: 365 EPIRR 369 >UniRef50_D2PPF8 ROK family protein n=2 Tax=Actinomycetales RepID=D2PPF8_9ACTO Length = 414 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 53/170 (31%), Positives = 85/170 (50%), Gaps = 8/170 (4%) Query: 184 VMVDNDCVMLALAE-KWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 VMVDND + ALAE ++ +++ D ++ + G+G+ + + + RG G+IGH Sbjct: 204 VMVDNDANLGALAEHRYGDHAGTADLIQLSGETGVGAGVICDGRPLRGHHGYVGEIGHLR 263 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 + PDG VC CGR GCLE VA + A+ AR+ P + DP+ L T QL+ + G+ Sbjct: 264 IQPDGPVCGCGRRGCLEAVAGMPAI--LARLEPADAP---ETDPQ-LRTEQLVRRAEEGD 317 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQ 352 + +G + +++L+ + L G G WL I Q Sbjct: 318 TATLKALAEVGGLLGRGISVLVDLLDPELVVLGGSYAGLGR-WLVPAIEQ 366 >UniRef50_C9YT50 Putative ROK family transcriptional regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9YT50_STRSW Length = 429 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 87/402 (21%), Positives = 168/402 (41%), Gaps = 20/402 (4%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 ++ IR N+ +L + + ++ LA +S+ V+ ++ EL + + + E Sbjct: 7 TSRDIRTANRYEVLRQIIAKSPTSRQELAAATGLSLATVATLVGELLDLRMITEVGFEDS 66 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEY-LQIDAPTPQALLSE 124 G G + G + +++ T + ++ + L+ E ++ P+ ++ Sbjct: 67 AGGRPRGLVAVNASGGALIGVDIAETYVHVELFDLALNVLARAEENVRPGENLPEQMVGH 126 Query: 125 IEKCWHRHRK---LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + + + + +++ GQVD TG+S+ P W V + LL E + Sbjct: 127 VAAAVGSVVAQAGIEGARVLGVGVSVPGQVDRATGISEYAPNWDWHD-VPLLDLLTEHIA 185 Query: 182 IRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + +DN +A+AE W ++ D ++N+ G+G+ V+ ++RG +G+ GH Sbjct: 186 YPLYLDNPLRAVAVAELWFGAARGHGDAVIVNLGTGVGAGLVLGGGLHRGVSNSAGEWGH 245 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 T + DG +C CG +GC+ET + R + P ST L PE T IAA Sbjct: 246 TTIVLDGRLCHCGNHGCVETYVGAPGIMLNLR---ELSPRSTLLHPEDQTAT--IAALAR 300 Query: 301 G----EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG-RSCAFGENWLNTIIRQTGF 355 G +P V +A +G + + +N+ N + L + A GE + + Sbjct: 301 GVARQDPVAVKVVRDTARYLGAGIADLVNLFNPEVVVLSSWVAAALGEPLVAEVREAVAR 360 Query: 356 NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 + R + AT I + LG +E L+ + Sbjct: 361 HALPR----PMAATDIVLSLIPTDPACLGAATFALEGALQSV 398 >UniRef50_C1I2A3 Xylose repressor protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I2A3_9CLOT Length = 397 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 75/355 (21%), Positives = 164/355 (46%), Gaps = 33/355 (9%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ N Q++R IL+ +Y + ++ ++ I+ VS I + E + I Sbjct: 1 MKLTKNQQKLRFK----ILDKIYAKGPISRIDISNETGITPATVSEITGNMIQENLIHEI 56 Query: 61 DD---ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPT 117 + E G I+P + + ++P I + + E + +Q+D Sbjct: 57 GEVIPEENKSGRKKILLGISPNHSFYIGTELSPKYISFCLTDNIGKIYKE-KTIQLDNSN 115 Query: 118 PQALLSE----------IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWT 167 + +LSE I+ C + + K + +A+ G D V S + W Sbjct: 116 LEEILSEEFYINKLSSFIDSCTNYNPK-------GIGIALPGHFDEVNK-SIITNNSFWK 167 Query: 168 TPVEVKYLLEEKLGIRVMVDNDCVMLALAEK-WQNNSQERDFCVINVDYGIGSSFVINEQ 226 ++ LLE + + + +N+ + L+E+ + N + +F +V G+ S++ N + Sbjct: 168 N-FDITILLE-RFDLPIYFENNVKCMTLSERLFSFNGNDDNFIFFHVGRGMFCSYMYNGE 225 Query: 227 IYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVS--TQL 284 +Y + G+IGH +V+P+G +C+CG+ GCL+T S + + K++++ + + QL Sbjct: 226 LYAKDNFLVGEIGHIVVHPNGELCECGKRGCLQTYGSEAWIIKKSQILFDNSETTYLKQL 285 Query: 285 DPE--KLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGR 337 E K+T ++ A++ G+ I ++ + N + +++ N +++ ++I ++G Sbjct: 286 VSERNKITIETILKAYRLGDEGIIKILNSAINYLSITINNLSMMIDSSKIIIHGE 340 >UniRef50_A9WM33 Glucokinase n=4 Tax=Micrococcaceae RepID=A9WM33_RENSM Length = 446 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 87/349 (24%), Positives = 150/349 (42%), Gaps = 22/349 (6%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGH 69 +R N+ I+E L ++ L+R +S VSN+++ + V S R Sbjct: 63 LRQSNQQRIVETLLNAGPLTQAELSRHTGLSTATVSNLVKIMSDGGLVSTAPTTSSGRRA 122 Query: 70 SSGTWLIAPEGDWTLCLNVTPTSIECQVAN------ACLSPKGEFEYLQIDAPTPQALLS 123 +S + G + ++V T + +A+ A S K +L ++ A L Sbjct: 123 TS--VRLNSNGAVAVGIDVGRTHVRVAIASLGYRVIAERSIKLPLGHLAVEGVKAAADL- 179 Query: 124 EIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIR 183 ++ H L + + I G +D TG P + + +LE+ L + Sbjct: 180 -LQGLLH-DAGLPASAVVGAGVGIPGPIDSRTGTVIQGAILPEWVGINILEMLEDALKVP 237 Query: 184 VMVDNDCVMLALAE-KWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 V VDN + ALA+ W +S D + + GIG+ ++ Y G++ +G+IGH Sbjct: 238 VYVDNYANLGALAQVTWGVHSAVEDLVFVKIGSGIGAGLILGGSPYYGNIGVTGEIGHAT 297 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 ++ G++C CG GCLETVAS + + + L S+ P +TT +I + + Sbjct: 298 ISEQGLICRCGNRGCLETVASTAIM-----IELLSRGA-----PAPITTEDIIRLAREKD 347 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIR 351 +D + A+G ++ N N+LN I + G GE L I R Sbjct: 348 SATLRVIDDAGQAVGRAIANVANLLNPEVIVVGGSLAELGEVLLEPIRR 396 >UniRef50_A5UB07 N-acetylmannosamine kinase n=107 Tax=Gammaproteobacteria RepID=NANK_HAEIE Length = 300 Score = 81.6 bits (200), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 50/163 (30%), Positives = 84/163 (51%), Gaps = 13/163 (7%) Query: 188 NDCVMLALAE-KWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPD 246 ND AE + QN+ Q +F I V G+G V+N+ + GS +G IGHT+ +P+ Sbjct: 103 NDAQAATYAEYQLQNSEQVSNFVFITVSTGVGGGIVLNQILQTGSRGIAGHIGHTLADPN 162 Query: 247 GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWIT 306 G +C CGR GC+E +AS A++ + W DP+ ++ ++ + T Sbjct: 163 GAICGCGRRGCVEAIASGRAIEAVSSQW------EDPCDPK-----EVFERFRKNDEKAT 211 Query: 307 SWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 + V+RSA AI + + + L+I +I + G S E +L+ + Sbjct: 212 ALVERSAKAIANLIADLVISLDIQKIAI-GGSVGLAEGYLSLV 253 >UniRef50_B9JIZ2 Transcriptional regulator protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JIZ2_AGRRK Length = 343 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 94/185 (50%), Gaps = 12/185 (6%) Query: 170 VEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIY 228 V + ++ EK GI ++ND +A++EK ++++ +F ++ GIG + I ++Y Sbjct: 126 VPLARIIREKTGIETFIENDAKAVAVSEKLFGSARDILNFSAVSFGDGIGCAHFIGGKLY 185 Query: 229 RGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEK 288 RG+ G+G+I H + +G C CG+ GCL+TVAS+ A+K+ ++ + T+L+ E Sbjct: 186 RGNHGGAGEIAHCTIELEGSPCRCGKRGCLDTVASMKAIKEMSKAAGLACTSLTELEEEA 245 Query: 289 LTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNT 348 G + R+ A+GL++ + + + I + F + L T Sbjct: 246 ----------SVGNAAAIRILHRAGGALGLAIAHLIQFNDPGMILVTHVEGNF-DGLLGT 294 Query: 349 IIRQT 353 +++Q Sbjct: 295 VMQQA 299 >UniRef50_D2PL28 ROK family protein n=18 Tax=Actinomycetales RepID=D2PL28_9ACTO Length = 404 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 82/339 (24%), Positives = 138/339 (40%), Gaps = 28/339 (8%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 + +R N+ VIL +YR ++ L R +S +VSN++ EL E V Sbjct: 9 RDMRRSNRSVILTSIYRHGPLSRYELGRETSLSAASVSNLVGELLDEGVVEEAGSVESDG 68 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQ-------VANACLSPKGEFEYLQIDAPTPQA 120 G +AP + + V T + + V +SP ++ P P+ Sbjct: 69 GRPRVLLRVAPTFGYVVGAEVGETRVRVELFDLAMNVVATVVSP------IETPKPAPEL 122 Query: 121 LLSEIEKCWHR---HRKLWPDHTINLALAIHGQVD-PVTGV--SQTMPQAPWTTPVEVKY 174 + + + + + + L +A+ G V+ P V +QT+ W V + Sbjct: 123 AVRSVLQGLDEVIAGAGVAKERVLGLGVAVAGVVEGPADAVVHAQTLG---WDG-VPLGA 178 Query: 175 LLEEKLGIRVMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLY 233 +L I + VDN L AE W + D V V G+G++ V YRG+ Sbjct: 179 MLAAGTEIPIQVDNGANTLGQAEMWFGAGRGATDAVVALVGSGVGAALVTGGTSYRGTRS 238 Query: 234 GSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQ 293 +G+ GHT + G C CG GCLE A+ ++ R ++ S D E+ Sbjct: 239 SAGEWGHTTIMYGGRQCRCGALGCLEAYVGAEAVLERYR---EAGGPSAATDDEEAEFVA 295 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQI 332 L+AA + E V+ + +G N +N++N +I Sbjct: 296 LLAAVGTSE-VAAKVVEDTIGYLGAGFANLVNLVNPERI 333 >UniRef50_B7DT25 ROK family protein n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DT25_9BACL Length = 389 Score = 81.3 bits (199), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 85/333 (25%), Positives = 138/333 (41%), Gaps = 16/333 (4%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI-DDESQTRG 68 +R N+ I+ L KR +++ L R +S P +S I+++L + + + ESQT G Sbjct: 10 VRRLNERRIMNALREHKRLSRADLERQLNLSAPTISRIVEKLLRDGWIRELYPGESQTAG 69 Query: 69 HSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKC 128 I PEG L + + N L+ + A P L +E+ K Sbjct: 70 RKPILLDINPEGSGALGVELGRGCTRIVYTN-MLAELRASRTISRSATGPNDL-AEMVKS 127 Query: 129 WHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQ--APWTTPVEVKYLLEEKLGIRVMV 186 + L + I L +A G P + P W+ E LE +LG+ V + Sbjct: 128 FLVEESLTEERLIGLGVAAPGACFPNRDMVVPAPDLGTEWSKS-EAAQQLERELGVPVHL 186 Query: 187 DNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNP 245 ND LAE W +Q + + D G+G+ + IY G+ +G+ HTIVN Sbjct: 187 ANDANAAVLAETWFGTAQHAQHVAFVLADVGLGAGLAVAGSIYEGAARKAGEFSHTIVNF 246 Query: 246 DG-VVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPW 304 + V CD G GC+E+ AS A ++ + + V E T ++ SG Sbjct: 247 ESDVRCDDGHAGCVESQASGKA------IFARLKAVREVHAHE--TIEYVVKRACSGVEP 298 Query: 305 ITSWVDRSANAIGLSLYNFLNILNINQIWLYGR 337 S +DR+ + + N + + + L GR Sbjct: 299 DASVIDRAFRYLAAGIANLVRAFDPEVVVLGGR 331 >UniRef50_B4V8E4 ROK-family transcriptional regulator n=5 Tax=Streptomyces RepID=B4V8E4_9ACTO Length = 425 Score = 80.9 bits (198), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 78/342 (22%), Positives = 142/342 (41%), Gaps = 24/342 (7%) Query: 8 QQIRHHNKCVILELLYRQKR-ANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQT 66 Q IR N+ L ++ ++ +A +S V+N++ EL + E Sbjct: 16 QDIRRRNRFDALRCVFAAPGPVSRQEIAAATGLSFATVANLVAELLEAGVLREAGHEDSK 75 Query: 67 RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ------- 119 G + E + ++V TS++ ++ + L+ + P PQ Sbjct: 76 GGRPRARLAVNAERGALVGIDVAETSVQVELFDLALT-----VLRGVRLPLPQTDVRPQD 130 Query: 120 ---ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 A+++ +E + + +++ G V+ GVS P W V ++ LL Sbjct: 131 VVDAIVAGVEGL--SDSAVEAPRILGAGVSVPGLVEREGGVSVFSPYWSWRD-VPLRSLL 187 Query: 177 EEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 E+L + + +DN +AE W +E D V+ + G+G+ ++ +YRG+ + Sbjct: 188 AERLPMPLYLDNPLKAGTVAEMWFGAGREVDDLVVLTLRAGVGAGIAVDGALYRGATNSA 247 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDP-EKLTTAQL 294 G+ GHT + G C CGR GC+E S + R P+ LDP E + ++ Sbjct: 248 GEWGHTCLVRGGRACRCGRQGCVEAYVSSRGIADTVRELDAESPL---LDPDEDVVVTKV 304 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 A G+ V R+A +G + + LN+ N + L G Sbjct: 305 ARAAAEGDAVAAEAVARTARYLGEAAADLLNLFNPQTLVLGG 346 >UniRef50_Q7X438 Glucose kinase (Fragment) n=74 Tax=Streptococcus RepID=Q7X438_STROR Length = 208 Score = 80.9 bits (198), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 54/200 (27%), Positives = 91/200 (45%), Gaps = 7/200 (3%) Query: 166 WTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVIN 224 W T +K +E+ LGI +DND + AL E+W + + D + + G+G V Sbjct: 7 WKTLQPIKEKMEKALGIPFFIDNDANVAALGERWMGAGENQPDVVFMTLGTGVGGGIVAE 66 Query: 225 EQIYRGSLYGSGQIGHTIVNPDG-VVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQ 283 ++ G +G++GH V+ D + C CG+ GCLETVAS + + R + + Sbjct: 67 GKLLHGVAGAAGELGHITVDFDQPIACTCGKKGCLETVASATGIVNLTRRYADEYEGDAE 126 Query: 284 L-----DPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRS 338 L D E++T + + G+ + +G++ N +ILN + I + G Sbjct: 127 LKRLIDDGEEVTAKTVFDLAKEGDDLALIVYRNFSRYLGIACANIGSILNPSTIVIGGGV 186 Query: 339 CAFGENWLNTIIRQTGFNPF 358 A GE L + + N F Sbjct: 187 SAAGEFLLQGVQKVYDENTF 206 >UniRef50_C9NFC9 ROK family protein n=10 Tax=Streptomyces RepID=C9NFC9_9ACTO Length = 418 Score = 80.5 bits (197), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 84/351 (23%), Positives = 148/351 (42%), Gaps = 34/351 (9%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQ---ISIPAVSNILQELESEKRVVNIDD 62 + +R HN ++L + + A ++T A ++ ++ AVS+++++L V Sbjct: 13 DKDTVRRHNLSLVLRAVRDEGEAGEATRAGVSARVGLTRAAVSSLVEQLLDSGFVTESGK 72 Query: 63 ESQTRGHSSGTWL-IAPEGDWTLC--LNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ 119 + GT L +A G L +N+ S+ C V A + E+L P Sbjct: 73 TFSGQAGRPGTALKVARTGPAGLGVEINIDYVSV-CVVDLAGTGRVRQTEHLDNRGAPPG 131 Query: 120 ALLSEIEKCWHR------HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVK 173 +L+ R + L P + ALA+ G V G + P W Sbjct: 132 EVLARAAGIAARTLDSAREQDLCP---VGTALALPGLVS--GGSVRQAPNLGWNQVAAED 186 Query: 174 YLLEEKLGIR-------VMVDNDCVMLALAEKWQNN-SQERDFCVINVDYGIGSSFVINE 225 E G+R V +N+ + ALAE W R F + + G+G + V++ Sbjct: 187 LFGEALAGLRPGTAALPVRSENEANLAALAELWFGGLGTVRSFLYLTGEIGVGGALVLDG 246 Query: 226 QIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLD 285 ++ RG+ +G+IGH +V+P G C CG GCLE A SAL + A + + + ++ Sbjct: 247 ELLRGAHGFAGEIGHVVVDPAGPECRCGSRGCLEQYAGQSALLRAAGIGEGAGGAAGVME 306 Query: 286 PEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 E+ Q+G+P + V + +G L +N+ + + + L G Sbjct: 307 LERRA--------QAGDPVALAAVADAGRMLGQVLSGAVNLFDPDAVVLGG 349 >UniRef50_A4XCV6 ROK family protein n=2 Tax=Salinispora RepID=A4XCV6_SALTO Length = 381 Score = 80.5 bits (197), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/232 (28%), Positives = 101/232 (43%), Gaps = 14/232 (6%) Query: 109 EYLQID-APTPQALLSEIEKCWHRH-RKLWPDHTI-NLALAIHGQVDPVTGVSQTMPQAP 165 E + ID A P+ + + + + R PD + + LA+ G V G + P Sbjct: 103 EEVAIDIAAGPEEVFAVVGATFTRLLAATTPDQVLLGVGLALPGPVGFPEGRLVGPARMP 162 Query: 166 WTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINE 225 + V+ L + + V+V+ND A+ E + D + GIG+ V Sbjct: 163 GWSGVDAGAHLTDHFQVPVIVENDAKAAAMGEYVTRRQETGDMIYVKAGTGIGACLVTGG 222 Query: 226 QIYRGSLYGSGQIGHTIVNPDGVV-CDCGRYGCLETVASLSALKKQARVWLKSQPVSTQL 284 QI+RG SG + H V G C CG GCLETVAS +AL +Q L Q S Sbjct: 223 QIHRGGRGLSGDVTHVRVADSGERHCSCGSQGCLETVASGAALARQ----LAEQGSSAVT 278 Query: 285 DPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 PE +I A +P + + V + +G++L +N LN + + + G Sbjct: 279 VPE------IITAVGDADPTVVTMVRHAGGLLGVALSGLVNFLNPDTVVIGG 324 >UniRef50_D2Q094 Glucokinase, ROK family n=2 Tax=Kribbella flavida DSM 17836 RepID=D2Q094_9ACTO Length = 423 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 67/260 (25%), Positives = 111/260 (42%), Gaps = 16/260 (6%) Query: 96 QVANACLSPKGE-FEYLQIDAPT--PQALLSEIEKCWHRHRKLWPDH-TINLALAIHGQV 151 +VA + P+G + L+ D PT P+ I + H L H I + + G V Sbjct: 41 KVAAGVVDPEGNILDRLRRDTPTKDPKETEDAIAEVVH---DLESRHDVIAVGIGAAGFV 97 Query: 152 DPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAE-KWQNNSQERDFCV 210 D P W ++ +E +LG+ V+V+ND A +E ++ E Sbjct: 98 DGTRSSVLFAPHLAWRHE-PLRDAVERRLGLPVVVENDANAAAWSEWRFGGGQGESHLVC 156 Query: 211 INVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQ 270 + + GIG + + + + RG +G+ GH V P G C+CG GC E AS +AL ++ Sbjct: 157 VTLGTGIGGAILNDGALQRGKFGIAGEFGHMQVVPGGHRCECGNRGCWEQYASGNALTRE 216 Query: 271 AR-VWLKSQPVSTQL------DPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNF 323 AR + L PV+ L DP ++ + + G+P ++ +G+ L N Sbjct: 217 ARELALSGSPVAHNLLRAAEGDPRRINGPMVTELAKDGDPVAVELLEDVGRWLGIGLANL 276 Query: 324 LNILNINQIWLYGRSCAFGE 343 L+ + G GE Sbjct: 277 AAALDPGTFVIGGGVSDAGE 296 >UniRef50_A4FA32 ROK-family transcriptional regulator n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FA32_SACEN Length = 408 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 71/274 (25%), Positives = 119/274 (43%), Gaps = 20/274 (7%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGH 69 +R N +E L R+ ++ L + +S PA + +L LE + V + RG Sbjct: 18 LREINDRAAIEALLREGPLTRAELEDVIGLSKPATATLLNRLEGDGVVRRGELRGGNRGP 77 Query: 70 SSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP----QALLSEI 125 + TW + ++VTP ++ +++ + E +P P A+LS Sbjct: 78 RAQTWYVNGALAHVAGVSVTPNDVDVVISDITGDSRVEHR-----SPMPSGDTDAVLSAF 132 Query: 126 EKCWHRHRK---LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 L D ++ + G VDP TG P P +V L E LG Sbjct: 133 GDALTAAAAKVGLRTDELAHVVVGAQGAVDPATGHLGFAPHLPGWEGFDVPGRLGELLGT 192 Query: 183 RVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V V+ND ++AL E + +++ RDF ++ + G+GS+ V+N + RG+ G+G+I Sbjct: 193 EVTVENDVNLVALVEMDEGRARDVRDFVLVWLGDGVGSAVVVNRALLRGATGGAGEIDWM 252 Query: 242 IVNPDGVVCDC------GRYGCLETVASLSALKK 269 V PD D GR+G L ++ AL + Sbjct: 253 HV-PDRAGRDTGSDRRGGRFGKLVEPGAIMALAR 285 >UniRef50_D2B9Z8 Transcriptional regulator, ROK family n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B9Z8_STRRD Length = 407 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 54/179 (30%), Positives = 88/179 (49%), Gaps = 15/179 (8%) Query: 176 LEEKLG----IRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRG 230 L E+LG + V DN+ + A+AE++ S D I + +G+GS VIN + RG Sbjct: 174 LAERLGGTLDVPVTWDNNIRLAAVAERYTVESPACADLVYIALSHGVGSGVVINGTLARG 233 Query: 231 SLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLT 290 + +G+IGH V P G C CG GCLE S+ A+ + R + P+ Sbjct: 234 ASGTAGEIGHVSVEPSGPPCWCGGRGCLEQYLSIDAVLGRVRA----------VAPDVAD 283 Query: 291 TAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 A L+AA G+ + VD SA +G +L +L+ +++ + G G++ L+ + Sbjct: 284 VAGLVAALDRGDRSVRDVVDWSAELLGRALGTVAILLDPHRVVIGGELADLGDHLLDPV 342 >UniRef50_C7Q6P6 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q6P6_CATAD Length = 429 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 62/217 (28%), Positives = 95/217 (43%), Gaps = 16/217 (7%) Query: 138 DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAE 197 + + L + I VD +S WT + LE + G+ + ND ALAE Sbjct: 171 ERVLGLGVGIAAPVDADGALSAEGIMPGWTG-IRPGPELERRTGLATELTNDANAGALAE 229 Query: 198 KWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYG 256 ++ D I + GIG+ + ++ RG+ +G+IGH DG+VC CG G Sbjct: 230 HMYGAGRDIEDMVYIRLSAGIGAGVIAAGRLQRGAGGLAGEIGHLPAVRDGLVCRCGNRG 289 Query: 257 CLETVASLSALKKQARVWLKS--QPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSAN 314 CLET+AS A+ AR+ S +PV+ L A +G P V+ + Sbjct: 290 CLETIASPVAV---ARLLQDSWGEPVA---------PGDLPALLAAGTPGTARVVEDTGE 337 Query: 315 AIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIR 351 A+G +L + +LN I + G A GE + R Sbjct: 338 AVGRALAGLVTLLNPRLIVVGGDLAAIGEPLFEPLRR 374 >UniRef50_B3DQQ8 NagC-type transcriptional regulator n=7 Tax=Bifidobacterium RepID=B3DQQ8_BIFLD Length = 374 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 65/271 (23%), Positives = 128/271 (47%), Gaps = 24/271 (8%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGH 69 +R N+ +I LL+ + +++ L R +S AVS+++ + E+ ++ ++ + G Sbjct: 22 VRRKNRQLIFRLLFPTNQYSRAELGRRTGLSRVAVSDVVGRM-LEEGLLRETGQAPSGGK 80 Query: 70 SSGTWLIAPEGDWTLCLNVTPTS---IECQVANACLSPKGEFE-------YLQIDAPTPQ 119 L++ + D +++ T + V N P E ++ +D Sbjct: 81 GKRGTLLSIDIDRLRIISIDLTQEHLLHGAVTNLLGQPLRHAEVTLNTGSFVSVDV---- 136 Query: 120 ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 ++ IEK + I + +A G VD GV ++ W +++ + E Sbjct: 137 -IIELIEKML----GMSDGEVIGIGVASPGVVD--NGVVRSSTMRGWNN-LDLSTPIAEH 188 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 G+ V V ND L E++ + + ++ GIGS+ ++++ G L+ +G++G Sbjct: 189 FGLEVNVSNDATAAMLTERFFGQGGP-NMLFVRIERGIGSAILLSDTPVIGELHAAGELG 247 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQ 270 H ++ DG +C CG++GCLET+ S +ALKKQ Sbjct: 248 HISIDLDGPLCPCGKHGCLETMISGTALKKQ 278 >UniRef50_Q1Q3C7 Similar to glucokinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q3C7_9BACT Length = 322 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 103/216 (47%), Gaps = 5/216 (2%) Query: 170 VEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVI-NEQIY 228 + +K ++ + G+ +++ND A EKW ++ V+ +I + +++ Sbjct: 98 IPIKKIISDTFGLPCILENDANAAAWGEKWVGAGKDVSSLVMLTLGTGIGGGIILDNKLW 157 Query: 229 RGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEK 288 RG +G+IGH + DG +C+CG YGC+E AS + ++ R L+S S E+ Sbjct: 158 RGINNTAGEIGHMSIQTDGPLCNCGNYGCIEVYASAPGMVRRFRELLESGKASLLKKDEE 217 Query: 289 LTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNT 348 +T ++ A G+ S ++ + +G+++ N ++ILN + L G GE + Sbjct: 218 ITAKRINEAAVQGDGASLSIIEETGRYLGIAIVNIIHILNPGAVVLSGGLIGSGELLMRP 277 Query: 349 IIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLG 384 + R +R S K T+I F QL ++G Sbjct: 278 VKRTI----EERVLKASYKDTKILFSQLGTDAGIIG 309 >UniRef50_C6WP29 ROK family protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WP29_ACTMD Length = 410 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 55/206 (26%), Positives = 95/206 (46%), Gaps = 20/206 (9%) Query: 140 TINLALAIHGQVDP--------VTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCV 191 +++ L + VDP VT + + + P T + E G+ V+VDN+ Sbjct: 152 VVSIGLGLPAAVDPRRGRVNQSVTAMKEDLRGNPAT------WFEEHYPGVPVVVDNEAN 205 Query: 192 MLALAEKWQNNSQERDFCV-INVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVC 250 A E ++ + + + GIG+ VI ++RG +G++GH ++P+G+VC Sbjct: 206 FAAYGEYTYGVGRDAEVLLFVKASTGIGAGLVIGGTVFRGRHGFAGEVGHLTMDPNGLVC 265 Query: 251 DCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVD 310 CG GCLET+ S L ++ R + V +T A LI ++ +P + Sbjct: 266 RCGNRGCLETLVSGPRLVEEVRQAYRGHRVDL-----PMTLAGLIERARAHDPVCVRVLQ 320 Query: 311 RSANAIGLSLYNFLNILNINQIWLYG 336 + IGL+L NI+N + + L G Sbjct: 321 DAGRNIGLALARVCNIVNPDLVVLGG 346 >UniRef50_B0MYS3 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MYS3_9BACT Length = 331 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 80/175 (45%), Gaps = 4/175 (2%) Query: 181 GIRVMVDNDCVMLALAE-KWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 GI V + ND AL E + N RDF ++ + G+GS FV ++ G +G++G Sbjct: 119 GIPVRITNDANAAALGEIAYGNAGGMRDFIMVTLGTGLGSGFVAGGRMIYGHDGMAGELG 178 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDP---EKLTTAQLIA 296 H +V P G C CGR GCLET S + +K+ + + V + L +K + Sbjct: 179 HVVVEPGGRQCGCGRRGCLETYVSATGIKRTVFELMARETVPSVLRDVPYDKFDARIITE 238 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIR 351 A Q G+ +A +G +L N + I + ++ +G GE L R Sbjct: 239 AAQKGDSLALEVFRCTAERLGRALANAVAITSPEAVFFFGGLAQAGELLLEPTRR 293 >UniRef50_C8XGH9 ROK family protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGH9_NAKMY Length = 386 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 53/200 (26%), Positives = 92/200 (46%), Gaps = 11/200 (5%) Query: 143 LALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNN 202 + +++ G VDP + + P W V + L+ E+ G+ +++ND L AE W Sbjct: 142 VGISLAGPVDPSSDMVTHSPFLGWED-VPLARLVSERTGLPTVIENDVRALTAAEHWFGA 200 Query: 203 SQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETV 261 + DF ++ + GIG VI +++ G+ G+GQIGH + P G +C+ G GC + Sbjct: 201 AAGATDFVLVTIGAGIGCGVVIGDRLVDGNTGGAGQIGHLPITPSGPLCERGHRGCARSY 260 Query: 262 ASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLY 321 + SA+ QA S L LT A+L++ GE + V + A+G + Sbjct: 261 LASSAMVGQA---------SMALHRPDLTYAELVSLAHQGERVASRVVRDAGYALGTLIG 311 Query: 322 NFLNILNINQIWLYGRSCAF 341 I +++ + G Sbjct: 312 LVTAITAPSKVIISGEGVTM 331 >UniRef50_C7R1E2 ROK family protein n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R1E2_JONDD Length = 402 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 56/185 (30%), Positives = 90/185 (48%), Gaps = 13/185 (7%) Query: 170 VEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCV-INVDYGIGSSFVINEQIY 228 V V +++ E++G V V N M AL E Q + + I V IG++ +IN +++ Sbjct: 175 VAVAHVMSERIGKPVYVANSSNMGALGELRQGAAAGAQHTLYIQVGQRIGAALIINGELF 234 Query: 229 RGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEK 288 G+ +G+ GHT +PDG +C CG GCLETVA + L + RV S V T D Sbjct: 235 WGANGSAGEFGHTTTDPDGQICRCGNRGCLETVAGGNVLLEALRV---SHGVMTLKD--- 288 Query: 289 LTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNT 348 ++ + G+ + + AIGL+ N N+ N ++ + G G L+ Sbjct: 289 -----MMRYARDGDLGCIRAIADAGRAIGLAAANLCNVFNPERVVVGGDLAHTGSILLDP 343 Query: 349 IIRQT 353 +R+T Sbjct: 344 -LRET 347 >UniRef50_C7QYR0 ROK family protein n=2 Tax=Micrococcineae RepID=C7QYR0_JONDD Length = 385 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/269 (23%), Positives = 120/269 (44%), Gaps = 15/269 (5%) Query: 9 QIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRG 68 +RH ++ ++L LY+ + +++ LAR ++ VS+++ +L K V + TR Sbjct: 28 DVRHLHRTLLLSHLYKSEPKSRADLARATGLTRVTVSDVVADLLDRKLVEEVGTRPGTRV 87 Query: 69 HSSGTWLIAPEGDWT----LCLNVTPTSIECQVANACLSPKGEFEY---LQIDAPTPQAL 121 T + D+T +CL++ S E + A S G+ Y +++ Sbjct: 88 GKPATLVTV---DYTSHALVCLDL---SRETEFRGAITSLDGDILYRDAIELGDDRGDTA 141 Query: 122 LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 ++++ + HR + + + G V G + P W +E+ L ++L Sbjct: 142 VTKVTQLAHRLIDNATVPVLGIGVGTPGIVS-AEGTVRNAPNLGWRD-LELARHLHDELH 199 Query: 182 IRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 + V ND LAE ++ + G+G+ + + + RG +G+IGH Sbjct: 200 LPTYVANDADTAVLAESTFGAGDANGLMLVQIGLGVGAGILCDSHLLRGPEGTAGEIGHV 259 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQ 270 V+ + +VC CGR GCLET + L+++ Sbjct: 260 RVSDEHIVCSCGRTGCLETYLAAPRLRER 288 >UniRef50_B8E0R0 ROK family protein n=2 Tax=Dictyoglomus RepID=B8E0R0_DICTD Length = 396 Score = 79.7 bits (195), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 83/341 (24%), Positives = 141/341 (41%), Gaps = 39/341 (11%) Query: 9 QIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR- 67 Q R NK +IL R + +++ +A+ +S V+ ++ L E ++ I+ S+ + Sbjct: 14 QQREVNKTIILNAFLRCRNISRTEIAKRFNLSKSTVTRLVNNLIDEGMIIEIEPSSEKKI 73 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEK 127 G + + PE L + V T + ++ K +L PQ L E+EK Sbjct: 74 GRKAIVLGLNPEYRNALAIKVGVTYTYLSKIDFAMNIKEIKSFLT--PKNPQDFLDELEK 131 Query: 128 CWHRHRKLWPD---HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL---- 180 + L+P+ T + + I G VD P W + + ++ E++ Sbjct: 132 A---TQMLFPEGLEKTHAVGIGIPGIVDNTFKNVVVAPNLNWKN-LPLGDMIAERMRRAF 187 Query: 181 --GIRVMVDNDCVMLALAEKWQNNSQERD---FCVINVDYGIGSSFVINEQIYRGSLYGS 235 I V +DN+ M +AE E + + V GIG+ +++ ++YRG + Sbjct: 188 SVEIPVKMDNEANMAVVAEGMLGTKIEYNDLNIVYVYVGEGIGTGLILDGKLYRGRYNTA 247 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLI 295 G+ GH + DG+ C CG GC E ASL + D EK T Sbjct: 248 GEFGHMTIMKDGIKCKCGNLGCWERYASLGGDIAE----------KAGFDLEKET----- 292 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 A + E + +VD + + L N +N LN + I L G Sbjct: 293 -AEIADEKALKKYVDE----LTVGLINIINGLNPDVIILGG 328 >UniRef50_B8DAM8 ROK family protein n=22 Tax=Listeria RepID=B8DAM8_LISMH Length = 321 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/156 (30%), Positives = 86/156 (55%), Gaps = 3/156 (1%) Query: 142 NLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQN 201 ++ + + G+VD +GV + + T P + +LE K G+ V + ND V +AE+ Sbjct: 68 SIGVGLVGRVDHKSGVWLEI-EPGKTNPTPLADILEAKTGLPVSLGNDVVCATMAEQQFG 126 Query: 202 -NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVN-PDGVVCDCGRYGCLE 259 + DF +N+ G+ + FV++ ++ +G + +G+IGH +V+ V C CGR GC+E Sbjct: 127 WGRETNDFIYLNIGTGLAAGFVVDGRVTQGGHFNAGEIGHAVVDIHSDVRCGCGRCGCVE 186 Query: 260 TVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLI 295 +AS +K++A LK+ P S + + T +L+ Sbjct: 187 RLASGLGIKEEALRHLKNYPTSVLAENQAELTGKLV 222 >UniRef50_B0VJ28 Putative Glucokinase (Glucose kinase) (GlcK-like) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJ28_9BACT Length = 305 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 47/154 (30%), Positives = 85/154 (55%), Gaps = 8/154 (5%) Query: 134 KLWPDHTINLALAIHGQVDPVTG-VSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVM 192 K+ ++ + + + G +D TG V++ P P+ + LL E I DND + Sbjct: 55 KIGLNNIKGIGIGMPGAIDKTTGLVTENNPNLPFWVEHHPRELLPENCNIPFAFDNDANL 114 Query: 193 LALAEKWQNNSQERDFCV-INVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCD 251 +ALAE + +Q++++ + + V GIG VI+ +IY G+ +G++GH + G+ C+ Sbjct: 115 MALAESY---TQKKNYVIGVTVGSGIGCGIVIDGKIYHGAYGFAGELGHICIVDKGLKCN 171 Query: 252 CGRYGCLETVASLSALKKQARVWLKSQPVSTQLD 285 CG+ GCLE +S L++ R+ LK+ P ++D Sbjct: 172 CGKNGCLEAYSSGEGLRR--RLALKN-PRYAEMD 202 >UniRef50_UPI0001C31CF6 ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31CF6 Length = 402 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/342 (20%), Positives = 140/342 (40%), Gaps = 21/342 (6%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 + +R N+ +L L R+ ++ +A A +S +N++ +L E + Sbjct: 7 TTRDVRLGNRASVLYTLRREGPISRQDIAVRAGVSAATANNVVGQLLEEGVLGEAGQMPS 66 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA----- 120 G + I P + +++ T++ ++ + L L +D P Sbjct: 67 NGGRPASLTGINPGYGAVVGVDLGETAVRLELFDLALQ-----RTLLVDTPVRAGEQGAE 121 Query: 121 -----LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 + + +E+ + + + L + + G V+ P W + L Sbjct: 122 AIAELIAAGVERLLS-ESGVARERLLGLGVGVPGIVEDSGTSLVHAPSMGWEG-APLAAL 179 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYG 234 LE++ G+ V N L AE W + E +D V + G+G+S + +YRG+ Sbjct: 180 LEQRTGLPATVSNGAKALGTAEAWFGAAGEGQDVVVCLIGTGVGASLLQQGTLYRGASAS 239 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQL 294 +G+ GHT + DG C CG +GCLE A+ ++ W +T E+ QL Sbjct: 240 AGEWGHTTIVLDGDTCRCGAHGCLEAYVGAPAIVRR---WAAVSGEATAGLGEEEVIEQL 296 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 A ++G + +A +G + + +N++N ++I + G Sbjct: 297 AVAAEAGGEQALEVLRETARYLGAGVSDLVNLVNPDRIVIGG 338 >UniRef50_C5C1Z1 ROK family protein n=2 Tax=Actinomycetales RepID=C5C1Z1_BEUC1 Length = 403 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 48/182 (26%), Positives = 88/182 (48%), Gaps = 13/182 (7%) Query: 170 VEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYR 229 V+V +L ++VDND ++AL E D + V GIG+ + + ++ R Sbjct: 181 VDVPGILGAHFAAPILVDNDVNLMALGEHAMGFPDVDDLLFVKVATGIGAGIIADGELRR 240 Query: 230 GSLYGSGQIGHTIVNPDG--VVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPE 287 G+ +G +GH V P G +C CG GC+E +AS +A+ + R + + Sbjct: 241 GAQGAAGDLGHMAV-PGGEPRLCTCGNTGCVEALASGNAIATKLR----------EAGID 289 Query: 288 KLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLN 347 T+ ++A ++G+P T+ + ++ +G L +++LN + + + G A GE L Sbjct: 290 ATTSDDVVALVRAGDPTATATLRQAGRELGAVLAGTVSLLNPSVVVIGGSLSAAGEQLLA 349 Query: 348 TI 349 I Sbjct: 350 GI 351 >UniRef50_C9NFP9 ROK family protein n=3 Tax=Streptomyces RepID=C9NFP9_9ACTO Length = 386 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 62/237 (26%), Positives = 109/237 (45%), Gaps = 6/237 (2%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGH 69 +R N L+LL Q ++ + L +S P S +L LE V + + G Sbjct: 12 LRAMNDRAALDLLVAQGPLTRTRIGELTGLSKPTASQLLARLEDAGLVRSTGSQRGRPGP 71 Query: 70 SSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKG----EFEYLQIDAPTPQA-LLSE 124 ++ + I P L+V PT I+ VA+ + G E + + D A L++E Sbjct: 72 NAVLYEIDPAAAHVAALSVGPTGIDAVVADVTGTVVGSCRVEADAVAEDVRHRTAQLVAE 131 Query: 125 IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184 R L D + + G +DP TG + P P + L E +G V Sbjct: 132 AVDGALRPTGLGHDDLDAVVIGTPGAIDPHTGQLRYAPHLPGWHSRTLLADLAEVVGRPV 191 Query: 185 MVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 +++ND + A+AE+++ +Q+ D F + +D G+G++ V+ + RG+ G+G+IG+ Sbjct: 192 VIENDVNLAAVAEQYEGAAQDHDHFVLAYLDEGVGAAIVLGGTLLRGATGGAGEIGY 248 >UniRef50_C5CQ51 ROK family protein n=3 Tax=Comamonadaceae RepID=C5CQ51_VARPS Length = 387 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 89/350 (25%), Positives = 146/350 (41%), Gaps = 53/350 (15%) Query: 5 INNQQI-RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 I +QQ+ + N+ V+L LL + +++ LA + ++ VS +++EL E + Sbjct: 3 IGDQQLLKRMNRSVLLRLLRARPGLSRARLASESGLTKSTVSLLVRELLDEGWL------ 56 Query: 64 SQTRGHSSGTWLIAPEGDWTLCLNVTP-TSIECQVANA---CLSPKGEFEYLQI----DA 115 G + L P + + V +E V C+S +GE + D+ Sbjct: 57 -SEAGTTVADGLGRPSTPLRINVGVRALMGVEIAVETVRLVCVSLQGEVLHADTQALADS 115 Query: 116 PTPQALLSEIEKCWHRHRKLWPDHTINLALA-----IHGQVDPVTGVSQTMPQAPWTTPV 170 A H +L + + L L+ + G VD TGV + P W V Sbjct: 116 APAGACAQVARMAAAAHGRL---NALGLRLSSIGVCVPGAVDDCTGVVRFAPNLGWRN-V 171 Query: 171 EVKYLLEEKL------GIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVI 223 + LEE G+ V + ND AL E + + D ++ D G+G+ V+ Sbjct: 172 SLLPALEEAFAAAGLPGVTVQLQNDADAAALGEYEFSGGESADPLIFVSCDVGVGAGVVL 231 Query: 224 NEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQA------------ 271 N++++ G+ +G+IGHTI+ DG +C CGR GC E AL ++A Sbjct: 232 NDRLFTGAQGMAGEIGHTILQLDGPLCSCGRRGCAEAFFGSRALAREAPGMAHAAAFFGV 291 Query: 272 ---RVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGL 318 +W+ P + L K T L A + E WV R A+A G+ Sbjct: 292 LLQNLWVTFDPRAIVLG-GKSCTGHLGLAQAAFE-----WVGRHADAAGM 335 >UniRef50_A9WV98 Transcriptional regulator, ROK family n=1 Tax=Renibacterium salmoninarum ATCC 33209 RepID=A9WV98_RENSM Length = 414 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 89/362 (24%), Positives = 158/362 (43%), Gaps = 45/362 (12%) Query: 9 QIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRG 68 ++R N L + R ++S L L +S PA +++L LES V S G Sbjct: 12 KLRIINDRAALSRILRAGEISRSELEDLTGLSKPATADLLSRLESAGLVQKQGMRSGGPG 71 Query: 69 HSSGTWLIAPEGDWTLCLNVTPTSIECQVAN------------ACLSPKGEFEYLQIDAP 116 + W + PE + ++VTP I+ Q+ + AC S G + I A Sbjct: 72 PKAPLWGVRPEVGFAAGVHVTPGFIDVQITDLSGTVVSQHQFAACAS-AGSWVRRAIQAA 130 Query: 117 TPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 A +SE + HT+ +++ G +DP +G+ + P P + ++ L Sbjct: 131 CVTAKISEKQIL----------HTV---ISLPGALDPRSGLLKFAPHMPAWSNYDLLAAL 177 Query: 177 EEKLGIRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 + +L + V V+ND ++ALAE + +F ++ +D G+G++ VI +++ G G+ Sbjct: 178 DLELDMPVTVENDVNLMALAELDSGLAAHAENFALVWIDSGLGAAIVIRRELFHGFTGGA 237 Query: 236 GQIGHTIVNPD------GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKL 289 G+I + + PD G+ G++G L + ++SAL QA K P Sbjct: 238 GEIDYLPI-PDRAQAETGMGRQGGKFGNLLSPDAISAL-AQAHGLEKQNPAQ-------- 287 Query: 290 TTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 A AA +P +++D A I L + +L+ + L G G +L + Sbjct: 288 --AVRTAAANHQDPHHAAFLDDLALRIATGLSAIVTVLDPELLLLGGSFGVAGGEYLADL 345 Query: 350 IR 351 +R Sbjct: 346 VR 347 >UniRef50_C1A9L9 Glucokinase n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A9L9_GEMAT Length = 331 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 60/205 (29%), Positives = 99/205 (48%), Gaps = 7/205 (3%) Query: 138 DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAE 197 D I + + G VD TG P W E+ + + + G+ V +DND E Sbjct: 69 DAFIGVGVGAPGTVDRATGRVLKAPNLDWHNR-ELAHPMSQLTGLPVQIDNDANCATYGE 127 Query: 198 KWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYG 256 W ++ + + + G+G +++ ++Y GS +G+IGHT ++ +G C CG YG Sbjct: 128 WWLGAARGGVNVIGVTIGTGVGGGIIVDRKVYHGSSDAAGEIGHTTIDLNGRRCGCGNYG 187 Query: 257 CLETVASLSALKKQARVWL---KSQPVSTQLDPE--KLTTAQLIAAWQSGEPWITSWVDR 311 CLE AS SA+ +AR L +S + T +D + ++T A + A G+ V Sbjct: 188 CLEAYASGSAIAGRAREALTNDESSMLRTMVDGDLTRITAAVVYEAAGQGDAVALEIVRD 247 Query: 312 SANAIGLSLYNFLNILNINQIWLYG 336 +A +G L N LNI N + + + G Sbjct: 248 TARVLGAGLANLLNIFNPDVVVIAG 272 >UniRef50_C1F2C5 Glucokinase n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F2C5_ACIC5 Length = 334 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 61/209 (29%), Positives = 99/209 (47%), Gaps = 16/209 (7%) Query: 132 HRKLWPDHTI-NLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDC 190 H +L H + + G + GV P P VE++ + E+L V V++D Sbjct: 55 HEELVATHEFAGVGVGSPGPLSLPDGVLHQPPNLPGWDGVELRREITERLPWPVWVNSDA 114 Query: 191 VMLALAEKWQNNSQE---RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDG 247 M ALAE E C+I + G+G V++ ++ G +G++GH + +G Sbjct: 115 NMAALAECRLGAGAEYGVDSLCMITLGTGVGGGIVLDGHLWHGLNGAAGEVGHGPLILNG 174 Query: 248 VVCDCGRYGCLETVASLSALKKQAR-------VWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 C CG GCLE AS +A+ ++AR S TQL+ KL AQ+ ++ Sbjct: 175 PPCACGARGCLEVYASATAVVRRARELNLVAATEAHSDEAGTQLNAAKL--AQMA---EA 229 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNI 329 G+ S +++ +A+GL L N +N LN+ Sbjct: 230 GDAVARSIYEQAGHALGLGLANLVNTLNL 258 >UniRef50_Q64GL6 Rep n=2 Tax=Actinobacteria (class) RepID=Q64GL6_9ACTN Length = 389 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 88/185 (47%), Gaps = 15/185 (8%) Query: 172 VKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCV-INVDYGIGSSFVINEQIYRG 230 V +LE +LG+ V VDN+ + ALAE ++ R V + + +G+G V+N +++ G Sbjct: 172 VPEVLERRLGLPVYVDNEANLGALAEVRFGAARGRQHVVYLRISHGVGGGIVLNGEVFHG 231 Query: 231 SLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLT 290 +G+IGH ++ +G +C CG GCLET A V L S LT Sbjct: 232 RSGTAGEIGHVTIDDNGPICRCGNRGCLETFVG-------APVLLSMLTASHG----HLT 280 Query: 291 TAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGE---NWLN 347 +IA Q G+P + + +G++ + N+ + + + GR G + L Sbjct: 281 LPDVIARAQQGDPGCRRVISDAGRYLGVAAASVCNLFDPELVVVGGRLAEAGPILMDPLR 340 Query: 348 TIIRQ 352 T++ Q Sbjct: 341 TVLAQ 345 >UniRef50_A5N8K8 Transcriptional regulator n=31 Tax=Clostridium RepID=A5N8K8_CLOK5 Length = 317 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 52/223 (23%), Positives = 106/223 (47%), Gaps = 5/223 (2%) Query: 143 LALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNN 202 + L G +D G P P+ + L+ + + +DND A+AE Sbjct: 69 IGLGAPGPLDIDKGKIICTPNLPFKN-FNIVSPLKNHFKMPIFLDNDGNAAAIAEHMFGA 127 Query: 203 SQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETV 261 + + I V GIG ++N QIYRG+ + +IGH ++ G +C+CG +GC E + Sbjct: 128 GKGINNMVFITVSTGIGGGAILNGQIYRGNTKNALEIGHMTLDAQGPLCNCGNFGCAEVM 187 Query: 262 ASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLY 321 AS +A+ ++A+ +K +T + +T+ ++ Q G+ + +D + N +G+ + Sbjct: 188 ASGTAIAREAKKAVKMGYNTTLALYKNITSKEVFKEAQLGDSISQNILDTTLNYLGICVA 247 Query: 322 NFLNILNINQIWLYGRSCAFGE---NWLNTIIRQTGFNPFDRD 361 N + L+ + + G G+ + +N ++++ F ++ Sbjct: 248 NIITCLDPEAVIIGGGVSKGGKIIFDKINEVVKRRCFGTVSKN 290 >UniRef50_B5Y840 Glucokinase n=1 Tax=Coprothermobacter proteolyticus DSM 5265 RepID=B5Y840_COPPD Length = 289 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 59/200 (29%), Positives = 93/200 (46%), Gaps = 12/200 (6%) Query: 142 NLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAE-KWQ 200 + + + GQVD TG W + LL+E+L + V V+ND + AL K++ Sbjct: 52 GVGIGVAGQVDYETGTVIFGGNIGWEN-FPLGRLLQEELNVPVFVENDANIFALGVWKYE 110 Query: 201 NNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLET 260 S+ + + GIG FV + R + +IGH ++ +G C CG +GCLE+ Sbjct: 111 LGSKPESVLGVTLGTGIGGGFVYEGDLLRSKRGATLEIGHMVIEAEGPACTCGSHGCLES 170 Query: 261 VASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSL 320 +A AL+K W ++ EKLT AQ+ +SG+ R +G++ Sbjct: 171 LAGGWALEK----WY------SERTGEKLTGAQIHERARSGDKEAIFLYQRLGYYLGIAC 220 Query: 321 YNFLNILNINQIWLYGRSCA 340 + NILN + I L G A Sbjct: 221 ASLANILNPDIIVLGGSISA 240 >UniRef50_UPI0001789593 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001789593 Length = 320 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 56/213 (26%), Positives = 101/213 (47%), Gaps = 11/213 (5%) Query: 142 NLALAIHGQVDPVTG----VSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAE 197 + + GQ+D G T+P WT +K L+ ++ RV VDND ++A+AE Sbjct: 65 GIGIGSAGQIDFREGTVLYAGDTLPD--WTGTA-IKRLVTQRYNTRVYVDNDVNVIAMAE 121 Query: 198 KWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYG 256 K + D F + + GIG + + + ++ RG G+ ++GH V+ +G C CG G Sbjct: 122 KMYGVGKHCDNFVCLALGTGIGGAVMESGRLLRGVFGGAAELGHVSVDINGPRCSCGNNG 181 Query: 257 CLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAI 316 C+E AS S + AR+ L+ Q + + + +I AW +P T+ + A+ Sbjct: 182 CIELYASGSGI---ARIGLEMQRDESASYAWRPNSRDIIRAWHQDDPSATAVMRVVIRAL 238 Query: 317 GLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 G ++ +++ N + + G G +L + Sbjct: 239 GAAVAGYIHAFNPEVVVIGGGVAESGPRFLQEL 271 >UniRef50_A5FUR2 ROK family protein n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FUR2_ACICJ Length = 398 Score = 79.0 bits (193), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 82/343 (23%), Positives = 139/343 (40%), Gaps = 25/343 (7%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 RA +N+ +R N + ++ + ++ L++++ I +S I+ LES V Sbjct: 3 RARVNSALVRRINSARLFHMIRQNPGISQQKLSQISGIDPATISIIINNLESGGIVRRDT 62 Query: 62 DESQTRGHSSGTWL-IAPEGDWTLCLNVTPTSIECQVAN----AC--LSPKGEFEYLQID 114 D R T L + P + ++V P +I ++ AC L+ G Sbjct: 63 DAPTGRAGRPTTALSLDPRAGYLAGISVEPDAIRIVISTIDGTACADLAVPGSTAPEAAI 122 Query: 115 APTPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKY 174 A + + + L AL G G P W ++V Sbjct: 123 AAARSGVTAALRSLRATRATLLAAGVAMPALVSTG------GRIVFAPNIGWRD-LDVAE 175 Query: 175 LLEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLY 233 L +KL + V V+ND ALAE S++ DF + GIG + ++YRG Sbjct: 176 NLAQKLKVPVRVENDVKAAALAEHLFGASRDIADFVYVMGRSGIGGGLYLMGELYRGPHG 235 Query: 234 GSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQ 293 +G+IGH + P G C CG GC E S A+ L ++ + A Sbjct: 236 LAGEIGHMKIVPGGRACGCGGQGCFEAYVSEKAILSD----LAARGHGAR------DVAS 285 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 + A ++G+P + + + +GL+L N +NI++ +I L G Sbjct: 286 VRKACEAGDPVARAVLAEAGRHLGLALANLINIISPRRIVLGG 328 >UniRef50_C7MQX8 Transcriptional regulator/sugar kinase n=2 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MQX8_SACVD Length = 443 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 73/265 (27%), Positives = 117/265 (44%), Gaps = 27/265 (10%) Query: 84 LCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWH------RHRKLWP 137 L + TSI V + + E A P+A+L +E+ R + P Sbjct: 94 LAAELGATSINVGVVDLAGTVLAEHSEDADIAAGPEAVLERVEEVLDELLDQVRAEQNDP 153 Query: 138 DHTI-NLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIR----VMVDNDCVM 192 D T+ + + + G V+ TG P AP P Y + ++L R V VDN+ Sbjct: 154 DLTVWGVGIGLPGPVEFATG----RPSAPPIMPGWDGYPVRDRLARRYNTPVWVDNEVNT 209 Query: 193 LALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDG-VVC 250 +AL E +++ +RD + + GIG+ V ++RGS +G IGH V+ + VVC Sbjct: 210 MALGELRAGSARGQRDILYVKIGTGIGAGLVSGGTLHRGSQGCAGDIGHAAVSDETEVVC 269 Query: 251 DCGRYGCLETVASLSALKK-------QARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEP 303 CG GCLE A +AL + + R L ++ ++ D +T A + A QSG+ Sbjct: 270 RCGNIGCLEAYAGGAALARDGLSAAQEGRSRLLAEVLA---DTGTITAADISRAAQSGDR 326 Query: 304 WITSWVDRSANAIGLSLYNFLNILN 328 + R+ IG L ++ N Sbjct: 327 TSVELLTRAGRFIGGLLATLVSFFN 351 >UniRef50_C9ZFY3 Putative xylose repressor n=2 Tax=Streptomyces RepID=C9ZFY3_STRSW Length = 406 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 77/348 (22%), Positives = 139/348 (39%), Gaps = 39/348 (11%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N Q +R N +L + + +++ +A ++ AVS ++ EL + + E Sbjct: 20 NQQGMRRRNLARVLHAVNAEGPLSRAAVASRIGLTRAAVSTLVDELIRSGLLEELGPERP 79 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQV-----ANACLSPKGEFEYLQIDAPT--- 117 R G+ L P I ++ A + +GE + T Sbjct: 80 GRVGRPGSALA--------LSGRGPAGIGAEIGVDHLAVCAVDLRGEVRARAVRQGTNRG 131 Query: 118 --PQALLSEIEKCWHR------HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPW-TT 168 P+ ++ ++ + + LWP LA+A+ G V P W T Sbjct: 132 RSPEPVVDDLTRLVRQVVAEAESEGLWP---AGLAVAVPGLVASDARTVVRAPNLDWHDT 188 Query: 169 PVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIY 228 + G+ V VDN+ LAE W + DF ++ + GIG + V++ ++ Sbjct: 189 DLGALLPGGLPGGLPVTVDNEANFGGLAELWLGDGTPPDFLHVSAEIGIGGAVVVDGRLL 248 Query: 229 RGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEK 288 RG+ +G++GH V P+G C CG GCLE A A+ + A L+P + Sbjct: 249 RGTRGFAGELGHVPVRPEGPACACGGRGCLEQYAGEEAVLRAA-----------GLEPAE 297 Query: 289 LTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 L +G+ + + + A+G++L +N+L+ + L G Sbjct: 298 HRVEFLAERAAAGDKEVHRALRGAGTALGIALTGAVNLLDPETVVLGG 345 >UniRef50_C7Q516 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q516_CATAD Length = 404 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 68/337 (20%), Positives = 138/337 (40%), Gaps = 9/337 (2%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 + +R ++ +L +Y + ++ LARLA +S AVSN++ +L S+ V Sbjct: 8 TTRDLRRRSRATLLSCIYLGRAVSRPELARLAGMSSAAVSNVVSDLISDGLVAEAGSVDS 67 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKG----EFEYLQIDAPTPQAL 121 G P + + +++ T I + + LS E ++D L Sbjct: 68 NGGRPRTMLAARPGFGYAVGVDIGETHIHVVLFDWTLSTLATSTHEIRVGRLDPDVVVRL 127 Query: 122 LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + + + + + + + + G V P W+ V + L +L Sbjct: 128 VVSGVRSLLDSTGVPHERLLGIGIGVPGAVQEGERGVVHAPTLGWSG-VPLGDALRAELD 186 Query: 182 IRVMVDNDCVMLALAEKWQNNSQERDFCVINV-DYGIGSSFVINEQIYRGSLYGSGQIGH 240 +++DN L AE W+ ++ V+ + G+G++ + + + GH Sbjct: 187 APILIDNCARTLGQAEAWRGAGRDARRAVVALWGVGVGAAIAEGSSLAESGSSSTSEWGH 246 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 ++ G C CG +GCLE +A+ +P ++ D + A+L A + Sbjct: 247 AVIEARGRACRCGSHGCLEAYVGATAILDAYLAHPAGKPFTS--DGTEAKMAELAARATT 304 Query: 301 G-EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 G + T+ D +A +G+ + N +N++N +Q+ L G Sbjct: 305 GADEAATATFDEAAEYLGIGVGNLINMINPDQVILAG 341 >UniRef50_B5J2T6 ROK family protein n=1 Tax=Octadecabacter antarcticus 307 RepID=B5J2T6_9RHOB Length = 392 Score = 78.6 bits (192), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 74/339 (21%), Positives = 152/339 (44%), Gaps = 28/339 (8%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N ++ R NK +L + ++ +AR ++ VSNI+ EL + +++ S Sbjct: 11 NAERSRSRNKQAVLVQVRGAGTIGRAEIARALSLTTQTVSNIIAELFDDGMLLDKGRLSA 70 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGE---FEYLQIDAPTPQALL 122 RG + + + PEG + L + V P ++ A L +G E + + P+ +L Sbjct: 71 GRGLPAIQYALNPEGGYALGIEVRPDAVFA----ALLDMQGRSVSSERIALQQNHPEVVL 126 Query: 123 SEIEKCWHRHRKLWP---DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + ++ + R P + + + G + VTG++ V+ L + Sbjct: 127 THVKALYRRALDKVPTAKGRMLGAGIVMPGPLG-VTGIAGMESDLTGWQEVDAAALFTDA 185 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 G+ VM+ ND A+AE+ +Q+ F + G+G + Q+ G+ +G+I Sbjct: 186 TGLPVMLSNDANAAAIAERLNGVAQDIASFAYLYFGAGLGLGLIHQGQLVSGAYGNAGEI 245 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDP-EKLTTAQLIAA 297 GH + PD + G+ G LE S ++++ R K+ + ++D E+L Sbjct: 246 GHIPI-PDSI---YGQSGKLEDALSRLSVERHLRAANKA---ADRIDALEQL-------- 290 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 ++ +P + +W+D +++A+G ++ N+ + + L G Sbjct: 291 FEQRDPDLFAWLDTASDALGHAMVIVENLFDPQTVVLGG 329 >UniRef50_C8X8S2 ROK family protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8X8S2_NAKMY Length = 391 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 89/399 (22%), Positives = 165/399 (41%), Gaps = 30/399 (7%) Query: 11 RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRV---VNIDDESQTR 67 RH ++ +LE++ R+ ++ L+ + +S AV+ +Q+L +E+ + V Sbjct: 11 RHRSRQQLLEVIRRENGVTRADLSLITGLSRSAVAETVQDLLNERLIAEDVLAAGGRGAG 70 Query: 68 GHSSGTWLIAPEGDWTLC-LNVTPTSIECQVANACLSPKGE-FEYLQIDAPTPQALLSEI 125 L+A G ++ ++ + VA + S +GE + +D+ AL + Sbjct: 71 RGRPSALLVASGGTGSVVGIDFDHERVTVAVAGSDGSIRGEEHAAVNVDSEAAAALDVSV 130 Query: 126 EKCWHRHRKLWPDHTI-----NLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 HR L T ++A + +D T + ++ L +L Sbjct: 131 GMV---HRLLGQTGTSMSDIRSIAAGVPAPLDMRTNRIHSASVLTGWVGLDPAEELSNRL 187 Query: 181 GIRVMVDNDCVMLALAE-KWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 G V++ ND + A+ E ++ RDF + GIG+ V+ Y G+ +G+IG Sbjct: 188 GRPVLIGNDADLGAVGELRYGAAKGARDFIYVKASEGIGAGLVLGGSAYHGATGAAGEIG 247 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 HT + G C CG GCLETV S + +++ + T+L + A Sbjct: 248 HTRLGEQGTWCRCGNRGCLETVVSSTLVRR----------LMTELGIPRGRDETFPLADA 297 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 + P ++ + +G L + N LN + I L G GE + + + N F Sbjct: 298 AKHPVTGRFISEAGRTLGRVLADLCNCLNPSLIVLGGELGTAGEPLADGV--RESINRFA 355 Query: 360 RDEGPSVKAT-QIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 + P+ A+ ++ G L ++LG L + L +I Sbjct: 356 Q---PATAASLEVKVGALGLRAELLGAVSLAGQHALLEI 391 >UniRef50_C6B3W7 ROK family protein n=11 Tax=Rhizobiaceae RepID=C6B3W7_RHILS Length = 405 Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 51/182 (28%), Positives = 94/182 (51%), Gaps = 12/182 (6%) Query: 170 VEVKYLLEEKLGIRVMVDNDCVMLALAEK-WQNNSQERDFCVINVDYGIGSSFVINEQIY 228 V + L+ ++ + V +++D A+A++ + Q R+ V+ V GI + VI+ ++Y Sbjct: 171 VPLASLVASRVHVPVWLEDDTNAYAIAQQLFGLGRQHRNMAVLAVGVGISCALVIDGKLY 230 Query: 229 RGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVAS-LSALKKQARVWLKSQPVSTQLDPE 287 RG+ +G+ GHT+ +G +C+CG+ GCL S +S L++ W ++ E Sbjct: 231 RGANGAAGKFGHTLYEENGRLCECGKRGCLMAYHSEISMLRR----WREAT------GRE 280 Query: 288 KLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLN 347 +L +L AA SG+ + V S IG +L N +NI + I G + + G+ +L Sbjct: 281 ELGLPELSAALASGDTTALALVADSGRGIGTALANLVNITDPEVIVAGGEAVSLGDPFLT 340 Query: 348 TI 349 + Sbjct: 341 PL 342 >UniRef50_D1BZ04 ROK family protein n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BZ04_XYLCX Length = 361 Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 54/199 (27%), Positives = 96/199 (48%), Gaps = 21/199 (10%) Query: 168 TPVEVKYLLEEKLGIRVMVDNDCVMLALAEKW---QNNSQERDFCVINVDYGIGSSFVIN 224 P+ + LL E+LG+ V+VDND + AL + S+ D + + G+ + V++ Sbjct: 116 APMPLARLLGERLGVGVVVDNDLNVAALGAAHLAPEAASRPLDLAFLALGTGLAAGLVLD 175 Query: 225 EQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQL 284 + RG+ +G+IGH ++P G +C CG+ GCLE AS +A++ R+W P +T Sbjct: 176 GVVRRGT-GAAGEIGHVPIDPAGPLCPCGQRGCLELYASGTAVE---RLW----PTTTG- 226 Query: 285 DPEKLTTAQLIAAWQSGEPWITS-WVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGE 343 + +L+AA +G+P + W + L++ ++ + L G G Sbjct: 227 ---QPAPVELLAAVTAGDPAARAVWDAYADAVAAAVRMLVLSV-DVRHVVLGGGVAQLGA 282 Query: 344 NWLNTI----IRQTGFNPF 358 L+ + RQ +PF Sbjct: 283 PLLDAVQAALTRQAARSPF 301 >UniRef50_Q024A9 ROK family protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q024A9_SOLUE Length = 387 Score = 78.2 bits (191), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 74/335 (22%), Positives = 150/335 (44%), Gaps = 18/335 (5%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 +++ +R N+ ++L L+ ++ +++ LAR + + +S I+++L E V+ Sbjct: 12 SSEVVRDINRRIVLNLVRTRQPISRADLARASGLQRSTISLIVEQLIEENWVLEGPTGRL 71 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAP--TPQALLS 123 RG T+L + + +++ P +A+A G+F ++ + P+ L+ Sbjct: 72 PRGRRP-TFLRLNDDRVIIGVDIRPIQTTVALADA----NGKFTSQEVMSTPGDPKLALT 126 Query: 124 EIEKCWHRHRKLWPDHTI-NLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 ++ R + I + +++ G+ D + P WT ++++ + E+ G+ Sbjct: 127 QLIAAIKRIKSTCRGKMIEGIGISLPGRFDHSSNRLVFAPNLKWTD-IDIRDPIVEQTGL 185 Query: 183 RVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V ++N LAE W + E R+ V+ V GIG+ + N + RG +G+ GH Sbjct: 186 DVELENAANACVLAEVWFDRVHECRNLVVVTVSEGIGTGVLANGALVRGLSGMAGEFGHV 245 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 ++P G C CG GC E AS A R +L++ T L+ L++ G Sbjct: 246 PLDPTGPTCGCGSRGCWEIFASNRA---ALRYYLETGSTET-----GLSFTDLLSRADQG 297 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 + +D A+ +G + + L +I + G Sbjct: 298 DSRAEKALDMMAHYLGRGMRMIVAGLAPERIVVVG 332 >UniRef50_C0W5B5 Glucokinase n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W5B5_9ACTO Length = 315 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 92/192 (47%), Gaps = 8/192 (4%) Query: 168 TPVEVKYLLEEKLGIRVMVDNDCVMLALAE-KWQNNSQERDFCVINVDYGIGSSFVINEQ 226 T V++ ++ E +G+ V+V+ND AE ++ + + + V+ + G+G + VI+ Sbjct: 86 TGVKIGDVVSEGVGLPVVVENDANAAGWAEARFGAGAGKANVLVVTLGTGVGGAVVIDGH 145 Query: 227 IYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVS----- 281 + RG+ + +IGH + PDG C CG GCLE AS +AL K +P Sbjct: 146 LVRGAAGFAAEIGHISIVPDGRPCGCGLRGCLERYASGTALGVNGWELAKFRPAYAARII 205 Query: 282 --TQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSC 339 + D K++ + AA + G+P +R +A+G L + +L+ I L G Sbjct: 206 ELSGGDQNKISGKAVTAAAREGDPAALECYERLGDALGQGLADLAAVLDPEVIVLTGGLT 265 Query: 340 AFGENWLNTIIR 351 G+ L + + Sbjct: 266 EAGDILLTPVTK 277 >UniRef50_C4IH86 Xylose repressor protein n=1 Tax=Clostridium butyricum E4 str. BoNT E BL5262 RepID=C4IH86_CLOBU Length = 403 Score = 78.2 bits (191), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 76/331 (22%), Positives = 143/331 (43%), Gaps = 15/331 (4%) Query: 14 NKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQT---RGHS 70 N +LE +YR + ++ +A I+ +++I+ EL ++K ++ E Q G Sbjct: 13 NMSTVLEFIYRNPQTSRIEIAYSTGITPATITSIVGELLNKKLIIETGAEVQGALGSGRK 72 Query: 71 SGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWH 130 ++ P + L + + + +AC + F+ + IE Sbjct: 73 RKVLILNPSFGFFLGIEFNMKGLFLSITDACGNIVSNFKKDANHFNVQHINQAIIELINI 132 Query: 131 RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDC 190 L I +AI G D V S W +K + + ++ +N+ Sbjct: 133 ACETLDTSKIIGAGIAIPGHFDSVNK-SIISNNKMWENFSLLK--INKNFNFPIIAENNI 189 Query: 191 VMLALAEKWQN--NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGV 248 +AL E N N+ E+ F ++V +G+ SF + I S + G+IGHT+V+ +G Sbjct: 190 ECMALGEYLFNPLNTPEK-FLFLHVGHGLFCSFFNSNHIGFKSNFYLGEIGHTVVDINGP 248 Query: 249 VCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLD-----PEKLTTAQLIAAWQSGEP 303 C+CG+ GCL+T S S L K A+ +L +T L +++ +I A++ +P Sbjct: 249 KCECGKNGCLQTYISESWLIKSAK-YLFENSTNTILHSLVETSDEINIKTIIDAYKLNDP 307 Query: 304 WITSWVDRSANAIGLSLYNFLNILNINQIWL 334 + + +G S+ N L + + +I+L Sbjct: 308 YFKERIILGLKLLGTSIANTLIMQDAEKIYL 338 >UniRef50_C5BVK1 ROK family protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5BVK1_BEUC1 Length = 379 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 77/343 (22%), Positives = 130/343 (37%), Gaps = 26/343 (7%) Query: 11 RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQEL-ESEKRVVNIDDESQTRGH 69 R ++ IL+ L R+ RA++ +A +S VS + +L + VV ES G Sbjct: 12 RAGHEARILDHLRRRGRASRGEIATALGLSRATVSTVTGQLVRTGTLVVAPATESGRLGR 71 Query: 70 SSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCW 129 + P L L+ T + +A + G + A T EI Sbjct: 72 RPEVLSLDPSSGLVLGLDFGHTHVTVVATDASHTVVGSGTR-RFPATTSWTRRREIAVGM 130 Query: 130 HRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDND 189 H D +LA G + G + ++ + + V DN+ Sbjct: 131 ATHVLATTDRPESLAAVGIGVAGSIAGRPAVLEA--------IEATFADAFAVPVRTDNN 182 Query: 190 CVMLALAE-KWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGV 248 + LAE W D + + +G+G + VI+ ++ RG G+ GH V+P G Sbjct: 183 ARLAGLAEWLWGAAQGATDVMYLRLSHGVGGALVIDGRMRRGPRASGGEFGHVCVDPAGP 242 Query: 249 VCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSW 308 C C GCLE L A+ +A L+AA G+ + Sbjct: 243 ACRCTNRGCLERYVGLDAVLAEA---------------GADDVGALLAALDRGDDRAVAT 287 Query: 309 VDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIR 351 + +++ IGL L N +L+ ++ L G A G++ + + R Sbjct: 288 LGTASDRIGLVLGNVATVLDTPRVVLGGELAALGDHLVVGVRR 330 >UniRef50_C6WHR0 ROK family protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WHR0_ACTMD Length = 350 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 78/271 (28%), Positives = 126/271 (46%), Gaps = 16/271 (5%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N + +R +N V+L L R + LA + ++ AVS I+ L + ++ ES Sbjct: 3 NLRFLRGYNDAVVLGL-ARSGAMTRVELAERSGLTPQAVSKIVNRLIGDGLLL----ESG 57 Query: 66 TRGHSSGT--WLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPT--PQAL 121 TR G L+ D L L E +V A L+ + P P A Sbjct: 58 TRNVGVGKPRTLLKLAADRRLALGAQVERDELRVVLADLAGDVVGRAVAPLPPGFGPDAF 117 Query: 122 LSEIEKCWHRHRKLWPD---HTINLALAIHGQVDPVTG-VSQTMPQAPWTTPVEVKYLLE 177 ++E+ R R PD + L + G +D TG V A WT V ++ L E Sbjct: 118 VAELAALADRLRT--PDVEERLLGLGIGFVGPLDHRTGTVLDPNGLAGWTE-VPLRDLAE 174 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 ++LG+ V+VD D +AE W+ + RD ++ V G+G+ +++ +++RG+ +G+ Sbjct: 175 KRLGLPVVVDKDTNAAIVAESWRRGEELRDAVLVWVGTGLGAGLLLDGRVHRGARTNAGE 234 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALK 268 GHT + DG C CGR GC E V + +A + Sbjct: 235 FGHTSIRLDGPPCVCGRAGCAEAVHNAAATR 265 >UniRef50_Q9Z557 Putative ROK family transcriptional regulator n=2 Tax=Streptomyces RepID=Q9Z557_STRCO Length = 407 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 77/327 (23%), Positives = 138/327 (42%), Gaps = 26/327 (7%) Query: 19 LELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIAP 78 LEL+ + +++ LA L + +VS + +L V +S T G + Sbjct: 22 LELIASGRATSRAQLAELLGAAASSVSVAVAQLVEHGLVAEEGTQSSTGGRPRKVLRLGG 81 Query: 79 EGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQ----IDAPTPQALLSEI----EKCWH 130 + ++ + ++ + V + P GE + + A PQA LS + E+ Sbjct: 82 QDEFAVAADLGGSHARVGV----VLPGGELRDVSTVPLVIAEGPQAALSRLAATLEELVE 137 Query: 131 RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDC 190 +H + + L++ G VD TG + P V+ L E+ + + DND Sbjct: 138 QHGR---GRLRGVGLSLPGPVDTATGSVVQPSRMPGWNRFPVESWLRERFAVPAVADNDA 194 Query: 191 VMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT-IVNPDGVV 249 +A+ E + + ++ IG++ +++ ++YRG +G+I H I D V Sbjct: 195 NCMAVGEHIARKGRHQQVIMVKTGTAIGAAALVDGRLYRGGTGAAGEITHIRIARGDHVP 254 Query: 250 CDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWV 309 C CG CLETVAS +AL + R + V++ D +L T P V Sbjct: 255 CSCGNTDCLETVASGAALVRVLRD--EGVDVTSAEDVVRLAT--------DAHPEANRAV 304 Query: 310 DRSANAIGLSLYNFLNILNINQIWLYG 336 R+ + +G L +N N + ++L G Sbjct: 305 RRAGDYLGQVLAANVNFFNPDAVYLGG 331 >UniRef50_B5YE80 Glucokinase n=2 Tax=Dictyoglomus RepID=B5YE80_DICT6 Length = 320 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 50/178 (28%), Positives = 92/178 (51%), Gaps = 8/178 (4%) Query: 166 WTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQE--RDFCVINVDYGIGSSFVI 223 W V + LEE + V ++ND ++A AE W + + + + GIGS V+ Sbjct: 92 WKKEVLLGKELEETFNVPVYLENDVNLIAWAE-WLVGAGRGTKTMICVALGTGIGSGIVL 150 Query: 224 NEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVST- 282 N +++ G+ +G+ GHT V PDG VC CG GC+E +AS + ++K A+ L P S Sbjct: 151 NGKLWIGAHGMAGEFGHTTVLPDGPVCGCGNRGCIEAIASGTGIEKYAKSILPQYPNSLI 210 Query: 283 ----QLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 + +++T + A + G+ + + +G++L N+++I++ +I + G Sbjct: 211 WELCNGNLDEVTVKIIYQAAERGDKLAVDIFNYAGYYLGIALANYVHIIDPEKIVIGG 268 >UniRef50_C6PY82 ROK family protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY82_9CLOT Length = 400 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 63/325 (19%), Positives = 146/325 (44%), Gaps = 8/325 (2%) Query: 19 LELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIAP 78 L+++ ++ K ++ + +++ ++ +++ LE +K + T G + + +A Sbjct: 16 LDIIQKKGLITKKSIQAITGMTLTTLNRVMKSLEDKKLISEAGISKSTGGRKAVKYDVAQ 75 Query: 79 EGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHR-KLWP 137 G + + ++++ T + + N ++ + E+ D+ +P+ + +I KL Sbjct: 76 SGIYAIGVDMSRTYVRIVILNLKMTILEKKEFFMDDSFSPEKTVEKIGNIIDEGLLKLSI 135 Query: 138 DHTINLALAIHGQVDPVTGVSQTM--PQAPWT---TPVEVKYLLEEKLGIRVMVDNDCVM 192 D + L + I G V P+ M P+ + + V ++ + E++ + +DN Sbjct: 136 DKSEVLGIGI-GTVGPLDREKGVMINPKNFFNELWSNVPIRDMFEKRTSLPCFIDNGTNA 194 Query: 193 LALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCD 251 LAE ++ ++ ++ GI S+ + N I R H +V+ +G C Sbjct: 195 AVLAEYLFGKGKDFKNIVYVHCGIGIRSAVINNGIIIRTMRDSEDAFAHMVVDFNGEECS 254 Query: 252 CGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDR 311 CG GCL++ +S++A+ K LK+ T + ++ +++ + +++ Sbjct: 255 CGNKGCLDSYSSINAIVKSFNSILKNNNNDTNEEIKEEDYKKILELTVNNNKSAVEIINK 314 Query: 312 SANAIGLSLYNFLNILNINQIWLYG 336 A +G+ L N + ILN + LYG Sbjct: 315 GAEILGVGLANMVRILNPQLVILYG 339 >UniRef50_D2B0X7 ROK family protein n=2 Tax=Actinomycetales RepID=D2B0X7_STRRD Length = 391 Score = 77.8 bits (190), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 83/341 (24%), Positives = 146/341 (42%), Gaps = 28/341 (8%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M + + +R N V+L + R ++ LA + ++ VS ++ +L V Sbjct: 1 MTQAVRHDSMRARNLGVVLGEVRRSGPITRAALAEITGLTKTTVSKMVGDLLGAGMVTEA 60 Query: 61 DD-ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPK-GEFEYLQIDAPTP 118 RG ++ L L + + V + LS + + + A +P Sbjct: 61 GALRDGERGRPGTAVSLSGHRVAALGLEINVDYLSACVVDLTLSVRLRRTQAVDNRAASP 120 Query: 119 QALLSEIEKCWHRHRKLWPDHTINLA---LAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 L+ +++ HR + +A LA+ G VD G+ P W V V L Sbjct: 121 VETLAHLQELAHRAVDEARSEGLAIAGSTLAVPGPVD--GGLLHAAPNLGWHD-VRVGDL 177 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 L+ V V+N+ + AL E W S DF ++ + G+G+ V+ ++RG+ + Sbjct: 178 LD----FPVAVENEANLAALGELW-FGSGPSDFLHVSGEIGVGAGLVVGGALFRGARGLA 232 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLI 295 G++GH IV+PDG C CG GCLE A AL + A L P +L+ Sbjct: 233 GELGHVIVSPDGPTCRCGGRGCLEQYAGQEALLRAA--GLDGVP-------------ELV 277 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 Q+G P +R+ A+G++L + +++++ + L G Sbjct: 278 ERLQAGTPGALRACERAGQALGVALTSAVHLMDPGTVVLGG 318 >UniRef50_Q8R7I9 Transcriptional regulator n=2 Tax=Thermoanaerobacteraceae RepID=Q8R7I9_THETN Length = 296 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 53/197 (26%), Positives = 95/197 (48%), Gaps = 10/197 (5%) Query: 134 KLWPDHTINLALAIHGQVDPVTGVSQ-TMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVM 192 KL + + G+++ G+ + P T +K LLE++ I V+ DND Sbjct: 51 KLIDKDVKGIGIGSAGRINFKEGIVEYATDNLPGWTGCNLKQLLEDRYKIPVIADNDVNA 110 Query: 193 LALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCD 251 + E WQ + +D +I + G+G + V N ++ RG + +G+IGH I+ P G C+ Sbjct: 111 AVIGEIWQGAGRGYKDIVMIAIGTGVGGAIVYNGEVIRGGSWSAGEIGHMILYPKGRQCN 170 Query: 252 CGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDR 311 CG+ GCLE S +A+ AR + VS + L+A + G+ V+ Sbjct: 171 CGQRGCLEQYVSGTAI---ARTY---SEVSKEKKIAGAEEVFLLA--EKGDKMALEIVND 222 Query: 312 SANAIGLSLYNFLNILN 328 N++ +++ + N+L+ Sbjct: 223 FVNSLSIAILSLKNLLD 239 >UniRef50_UPI0001B56BDA ROK family protein n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B56BDA Length = 355 Score = 77.8 bits (190), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 74/340 (21%), Positives = 135/340 (39%), Gaps = 53/340 (15%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 +N + +R HN+ ++L + R ++ LA+ + ++ AVS I+ +L E +++++ + Sbjct: 6 VNLRGLRRHNRALLLGHILRAGGLSRVELAQRSGLTQQAVSKIVSDLLPEG-LLDVE-RA 63 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 G ++ + L V L+ GE E + ++ P P E Sbjct: 64 PAAGVGKPRTMLRLRAEARCALGAQLDRDGFLVLRTGLT--GEVEEI-VEGPLPIGFSPE 120 Query: 125 --IEKCWHRHRKLW----PDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 + RKL P + L + G +D G + P V ++ LL E Sbjct: 121 TAVTAIADGVRKLLSDVDPTRVLGLGVGAVGPLDHRAGRVRDATNMPGWHDVPLRDLLAE 180 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 + G+RV +D + A A W + V+ V GIG +I+ ++YRG +G+ Sbjct: 181 RTGLRVTLDKNTNSAAFAHAWPEETSAAT-AVVLVGTGIGVGLLIDGRVYRGPRTNAGEF 239 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GHT + G C CGR GC+E + + A Sbjct: 240 GHTTIAYAGPRCACGRRGCVEVMHRAAGTPHDA--------------------------- 272 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRS 338 A +G+ L + + +L++ +I L+GR+ Sbjct: 273 --------------ARLLGIGLADLVQVLDLERIVLFGRT 298 >UniRef50_B7GP72 ROK family protein n=14 Tax=Bifidobacterium RepID=B7GP72_BIFLI Length = 462 Score = 77.4 bits (189), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 93/375 (24%), Positives = 175/375 (46%), Gaps = 52/375 (13%) Query: 5 INNQQIRHHNKCVILELLYRQKRA------------NKSTLARLAQISIPAVSNILQELE 52 IN + +R+HN V+L+ L R ++ K+TL+ LA + I S ++QE E Sbjct: 7 INQEDLRNHNLSVVLDTLLRAEKPISRADLAKETGLTKATLSLLASMLID--SGVVQEGE 64 Query: 53 SEKRVVNIDDESQTRGHS---SGTWL-IAPEGDWTLCLNVTPTSIECQVANACLSPKGEF 108 S + H +G L I +G L L++ ++ + + ++ + Sbjct: 65 SVVSTTYGRPSTPLEIHGGSIAGIGLQINTDGYGCLALDLNGDTLGQEWVSEDMTGTDPY 124 Query: 109 E-YLQIDAPTPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQV--DPVTGVSQTMPQAP 165 E + ++DA T L S +++ R K+ + LA+ G V D V++ + Sbjct: 125 EIFAKLDAMT-FPLESRLKR---RGCKV-----VGAGLALPGIVTDDMWLLVARNLG--- 172 Query: 166 WTTPVEVKYLLEEKLGIRVMVDNDCVMLALAE---------KWQNNSQERD-FCVINVDY 215 W ++ + +L V+ N+ M A+A+ + N D F ++ D Sbjct: 173 WENVNLTRFNVVRRL--DVVAGNEAKMAAIAQIPGYATERASFLNVVDRTDSFIYLSTDI 230 Query: 216 GIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWL 275 G+G + V + ++ GS +G+IGH V DG +C CGR+GCLE A AL + A + Sbjct: 231 GVGGAVVRDGEVVMGSHGFAGEIGHLSVAMDGPLCSCGRHGCLEAFAGRRALVEAAGIAE 290 Query: 276 KSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLY 335 S+ E + T + W++G+P + VD++A+A+ ++ + +N+++++ + L Sbjct: 291 DGDATSS----EAIDT--FLQRWRAGDPDVAKVVDQAADALVSAIASTVNLVDVDTVLLG 344 Query: 336 GRSCAFGENWLNTII 350 G FG+ L T++ Sbjct: 345 GLWTHFGDE-LATVL 358 >UniRef50_UPI00017890E0 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017890E0 Length = 391 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 79/332 (23%), Positives = 140/332 (42%), Gaps = 26/332 (7%) Query: 14 NKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVN---IDDESQTRGHS 70 N+ +L L+Y + ++ LA +S V+NI+ L EK +V ID E+ + G Sbjct: 17 NQQKVLFLIYSEGPISRVELAEKTGLSRQTVTNIVNRLLKEKIIVTGELIDLEAGS-GRK 75 Query: 71 SGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWH 130 I + + L + I +V N E + L+ + + Sbjct: 76 RVGLHINSGHFYAIGLELAGKYIRGKVFNLRQEAVASAERTSNKYGSIDVLMQLLHEVID 135 Query: 131 RHRKLWPDHTI--NLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDN 188 P+ + + +++ G VD G+ P + +K LLE+K I V ++N Sbjct: 136 ELLTQVPNTSKVKGIGISMQGLVDSQHGIVLRTP-GIGVHRLPLKQLLEDKYDIPVYIEN 194 Query: 189 DCVMLALAEKWQNNSQERDFCV-INVDYGIGSSFVINEQIYRGSLYGSGQIGH--TIVNP 245 D +L++ E ++ + + I DYG G + V ++QI GS + +G+ GH Sbjct: 195 DVNLLSVNENMNGCLKDSNNNITIKFDYGTGGAIVHDKQIIAGSSFVAGEFGHYKGFYGE 254 Query: 246 DGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWI 305 D C CGR GCL T+AS S L VS K T + ++G+P Sbjct: 255 DAYPCHCGRSGCLTTLASSSGLS-----------VSI-----KCTLEEFAEGIRTGDPKF 298 Query: 306 TSWVDRSANAIGLSLYNFLNILNINQIWLYGR 337 ++ + I +++ N + +N + + + GR Sbjct: 299 LGLYEKIVDGIAIAVTNIITFINPDSLLMTGR 330 >UniRef50_C6JR29 XylR transcriptional regulator n=2 Tax=Fusobacterium RepID=C6JR29_FUSVA Length = 388 Score = 77.4 bits (189), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 84/394 (21%), Positives = 171/394 (43%), Gaps = 40/394 (10%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 +++R+ N+ L + +K +++ ISIP V+ IL+ + K + + Sbjct: 9 EKLRNENRT--FRFLVEVREFSKLEISQYLNISIPTVTKILERFLTNKLIYETGTNNGKL 66 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVAN------ACLSPKGEFEYLQIDAPTPQAL 121 G + + P+ +++ + V I + N K EF I++ L Sbjct: 67 GRKAIKYQFNPDAYFSIGIKVEMNHISMVLINLDGKILKQTVVKEEF----INSENFVFL 122 Query: 122 -LSEIEK-CWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 ++E++K W +K + + + + G V+P + + ++ + +EE+ Sbjct: 123 VINELKKFLWEFDKK---EFIKGIGIVLPGIVNPENNMIKL--GGNFSLLNQDMKEIEEE 177 Query: 180 LGIRVMVDNDCVMLALAEKWQNNS---QERDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 G+ + ++N+ A+ E N+S +++ +++D GIGS ++ Q+YRG SG Sbjct: 178 FGLPIFLENEANAGAIGEYIVNHSGLQTKKNILFVSIDTGIGSGIIVENQLYRGKGNKSG 237 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 +IGH + P+G C CG GCLE S AL K+ + + + E + + I Sbjct: 238 EIGHIPIIPNGDKCACGSEGCLEQYCSNLALMKEFEKEFQCEIK----EYEDIFQEKFIG 293 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF- 355 + ++R + L + L +LN ++I + G+ + E + ++++ F Sbjct: 294 NEKG-----KKILERYTWILALGIKTALMMLNSDKIIIGGKISDYKE-YFEPMLKEIIFS 347 Query: 356 -NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYL 388 N F D A + F LS +LG ++ Sbjct: 348 NNIFSND------ADILEFSSLSDNANLLGAAFI 375 >UniRef50_D1AFT6 ROK family protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AFT6_SEBTE Length = 316 Score = 77.4 bits (189), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/199 (28%), Positives = 98/199 (49%), Gaps = 6/199 (3%) Query: 143 LALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAE-KWQN 201 + + + G VD TG + P + L+ +K I V V ND + L E K+ Sbjct: 64 IGIGVPGLVDVKTGTVKFAPNIAMNN-YPIGDLIRDKYKIDVFVGNDVNVGTLGEWKYSP 122 Query: 202 NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETV 261 + +F I V GIG +I+ ++Y GS +G++GH ++ +G +C CG GCLE V Sbjct: 123 EGKSSNFIGIFVGTGIGGGIIIDNKLYTGSGGVAGELGHMTIDSNGAICGCGSRGCLEAV 182 Query: 262 ASLSALKKQARVWLK---SQPVSTQLDPEK-LTTAQLIAAWQSGEPWITSWVDRSANAIG 317 AS + ++ + + +K + L+ E L + L AA+ G+ + V+R+A +G Sbjct: 183 ASKTGIQAEIKARIKRGEDTDIKESLEKEGILKSGPLRAAYDKGDIVVRETVERAAKYLG 242 Query: 318 LSLYNFLNILNINQIWLYG 336 + + N +NI + + G Sbjct: 243 VGVANLINIFDPEAVVFGG 261 >UniRef50_D1CDD5 ROK family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDD5_THET1 Length = 321 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 96/204 (47%), Gaps = 5/204 (2%) Query: 149 GQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAE-KWQNNSQERD 207 G ++ GV P P V + L+EEK GI + ND + AL E + + + Sbjct: 71 GPINSKEGVVSNPPNLPGWVNVPLAKLIEEKTGIPTFLGNDANLAALGEFTYGSGKYVQH 130 Query: 208 FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSAL 267 I V G+G +I+ Q+ G +G++GH +V P G C CG YG LE ++S +A+ Sbjct: 131 LIYITVSTGVGGGIIIDGQLLEGHNGAAGEVGHMVVQPGGPKCSCGGYGHLEALSSGTAI 190 Query: 268 KKQAR--VWLKSQPVSTQL--DPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNF 323 K+AR L + +L +K+ + A + G+P ++++ +G +L N Sbjct: 191 AKRAREAASLNKDTIMIELAGSVDKINAKIVDEAAKKGDPLALKLLEQAGQWLGYALINL 250 Query: 324 LNILNINQIWLYGRSCAFGENWLN 347 ++I N I + G GE L Sbjct: 251 IHIFNPQMISIGGGVSEAGELLLG 274 >UniRef50_C8STB6 ROK family protein n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8STB6_9RHIZ Length = 298 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 45/123 (36%), Positives = 63/123 (51%), Gaps = 6/123 (4%) Query: 165 PWTTPVEVKY----LLEEKLGIRVMVDNDCVMLALAE-KWQNNSQERDFCVINVDYGIGS 219 P T P+E Y LE+ LG+ +V ND A AE R+F V GIG Sbjct: 80 PQTLPIENGYPLARALEKALGVPPLVVNDAQAAAWAEFSLGAGRGFRNFAFFTVSTGIGC 139 Query: 220 SFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQP 279 VI+ ++ G+ +G GH + +P G +C CGR GCLET+AS +AL ++ L +P Sbjct: 140 GLVIDGRLQTGATGLAGHSGHMMADPGGAICGCGRRGCLETIASGTALARRGSERL-GRP 198 Query: 280 VST 282 V Sbjct: 199 VGA 201 >UniRef50_B4U448 Xylose repressor XylR n=3 Tax=Streptococcus equi RepID=B4U448_STREM Length = 400 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 82/338 (24%), Positives = 158/338 (46%), Gaps = 29/338 (8%) Query: 18 ILELLYRQKRANKSTLARLAQISIPAVSNILQELESE---KRVVNIDDESQTRGH----- 69 IL+ +Y Q+ ++ +++L I+ V I +EL ++ + + D S R Sbjct: 13 ILDTIYAQRPISRIDISKLTHITPATVGAITKELLAQGWIHEIGELTDHSVGRKKILLDA 72 Query: 70 SSGTWLIA----PEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEI 125 S+ + A E + L + +I + N + P I + +SE+ Sbjct: 73 SANAFYFAGVELSEKHFYLVITDNLGTIYAK-HNQQIDP-------SISSYYKSDYISEL 124 Query: 126 EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTM-PQAPWTTPVEVKYLLEEKLGIRV 184 + + + K + I +AL G D T S + P V++ + + I V Sbjct: 125 IQAFLKQHKHYDVQAIGIALP--GHYDHSTSSSTHINTNNPIWQQVDLT-AIAKSFPIPV 181 Query: 185 MVDNDCVMLALAEK-WQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV 243 + N+ + +A++ ++ + +F +V G+ S++ IY G+IGHTIV Sbjct: 182 VFSNNAHCMIIAKRLYEQQAHNHNFIFFHVGRGMHCSYMYKGVIYSRHNAVVGEIGHTIV 241 Query: 244 NPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVS---TQLDPE-KLTTAQLIAAWQ 299 NP G +C+CG+ GCL+T AS + L K+A++ + P S + +D +L L+ A++ Sbjct: 242 NPTGELCECGKKGCLQTYASNAWLLKKAKLLHQYAPNSHLRSLVDKACELKLDHLLIAYE 301 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGR 337 G+ +T+ + + + + LSL N +++ QI+L+GR Sbjct: 302 LGDVGVTTLIHTAIDYLVLSLSNLSLLIDTEQIYLHGR 339 >UniRef50_B5JYP2 ROK family protein n=1 Tax=Octadecabacter antarcticus 238 RepID=B5JYP2_9RHOB Length = 399 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 83/337 (24%), Positives = 146/337 (43%), Gaps = 21/337 (6%) Query: 29 NKSTLARLAQISIPAVSNILQELESEKRVVNIDDE--SQTRGHSSGTWLIAPEGDWTLCL 86 ++S LA ++ ++ I+QEL + V D+ SQ RG I +G + L L Sbjct: 11 DRSRLAVDTGLTNATMTRIVQELLASGLVSETTDKTVSQGRGRPRTGLEINAKGGYVLGL 70 Query: 87 NVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWPDHTIN---- 142 ++ + +A+ + G D + L EI C K+ DH + Sbjct: 71 SILALNTSVVLADLSGAMIGSVSVEPADLSDARRTLDEI--CAAAE-KMVSDHGVERNQV 127 Query: 143 --LALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAE-KW 199 +AI G +D G P W P +V+ L +L + + V+N +A+AE + Sbjct: 128 LAAGVAIAGYLDVEGGTWLHSPYLRWP-PFDVRKSLTNRLNLPITVENVNRCIAVAETRI 186 Query: 200 QNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLE 259 D ++ G+G++ + N Q+ RG +GQIGH DGV+C CG+ C+ Sbjct: 187 GCCVGMTDVFLVRAALGLGAASISNGQVLRGHNNTAGQIGHFPEGSDGVMCSCGKSDCIT 246 Query: 260 TVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEP--WITSWVDRSANAIG 317 AS A+ Q + LD + A+L+A + + I + ++ +A+G Sbjct: 247 MAASGWAILDQLEL---RDAAGDGLDLLEDQGAKLLAVLEQSQSDVKIAQIIRQAGSALG 303 Query: 318 LSLYNFLNILNINQIWL---YGRSCAFGENWLNTIIR 351 L L+ +I L GRS +G+ + ++++R Sbjct: 304 RHCVTLLRALDPERIVLAGPLGRSAIYGQAFRDSLVR 340 >UniRef50_C6WCX5 ROK family protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WCX5_ACTMD Length = 382 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 68/262 (25%), Positives = 120/262 (45%), Gaps = 12/262 (4%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGH 69 +R N ++L+ + ++++++A ++ VS+++ + VV E+++ Sbjct: 1 MRRLNSALVLDAIASAPGSSRASVATRTGLTKATVSSLVDRMIGAALVVEGAAEARSGPG 60 Query: 70 SSGTWL-IAPEGDWTLCLNVTPTSIE-CQVANACLSPKGEFEYLQIDAPTPQALLSEIEK 127 GT L ++P G L + V + C V K A +P +L E+ Sbjct: 61 RRGTALHLSPAGPHGLGVEVGVDYLATCLVDLTGRVRKRWVRDSDNRASSPALVLGEVAA 120 Query: 128 CWH-RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG----- 181 R+ P I +A + G V+ +GV + P W V+V+ L LG Sbjct: 121 AVRIATREDVPVGGIGVA--VPGLVESASGVLRVAPNLGWRE-VDVRGELGRLLGADAGG 177 Query: 182 IRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 + V V N+ + ALAE W ++ + DF ++ + GIG+ V++ ++ G G+IGH Sbjct: 178 LPVQVGNEANLAALAELWHGDAPQ-DFVHVSGEIGIGAGIVVDAGLFEGVSGFGGEIGHL 236 Query: 242 IVNPDGVVCDCGRYGCLETVAS 263 V+P G C CG GCLE +A Sbjct: 237 SVDPSGPRCTCGSRGCLERLAG 258 >UniRef50_A4VZ28 Transcriptional regulator/sugar kinase n=7 Tax=Streptococcus suis RepID=A4VZ28_STRS2 Length = 336 Score = 77.0 bits (188), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 73/330 (22%), Positives = 154/330 (46%), Gaps = 33/330 (10%) Query: 18 ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR-GHSSGTWLI 76 IL+ L+R ++++++ +++ +I+ ++N++ L +EK+V+ DE + G LI Sbjct: 15 ILKTLFRHQKSSRTRISKSLKITPATITNMISYLVAEKKVIETGDEVRDYIGSGRSRRLI 74 Query: 77 APEGDWT-----------LCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEI 125 + + L VT T I + N+ + E++ QI+ Q + + Sbjct: 75 TVNSQYRHYIGIEINANGIYLAVTDT-IGNLITNSNIKIT-EYDSKQINEIIIQLVTETL 132 Query: 126 EKCWHRHRKLWPDHTINLALAIHGQVDPVTG--VSQTMPQAPWTTPVEVKYLLEEKLGIR 183 +K + L +A+ G D +G +S + + V +++ + I Sbjct: 133 DKFSYLEFGA-------LGIAVPGHFDSKSGHIISNNVKWIYFDLAV-----IKQSISIP 180 Query: 184 VMVDNDCVMLALAEK-WQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 + ++N+ +A+ + S F I++ G+ SF +E I + + G+IGHT+ Sbjct: 181 IFLENNINCMAIGSYLFHPESSPEQFLFIHIGPGLFCSFFDSEHILQNKNFYIGEIGHTV 240 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKS---QPVSTQLD-PEKLTTAQLIAAW 298 V+ +G C+CG+ GCL+T S + L AR ++ + T ++ PE +T + A+ Sbjct: 241 VDLNGPSCECGKRGCLQTYISDTWLINNARFLFENVQGSIIKTLVEKPEDITLDVVYNAY 300 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILN 328 + G+ +I ++ + + S+ N L I + Sbjct: 301 RLGDGFIIEKIESGIDFLTTSIANTLIIYD 330 >UniRef50_B0PH01 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PH01_9FIRM Length = 403 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 56/211 (26%), Positives = 102/211 (48%), Gaps = 21/211 (9%) Query: 166 WTTPVEVKYLLEEKLGIRVMVDNDCVMLALAE-KWQNNSQERDFCVINVDYGIGSSFVIN 224 W P E+ LEE G V++ ND A+ E + + +R+ + G+G+ +I+ Sbjct: 175 WKIP-ELSQALEETFGTPVLIVNDVNAAAVGELNYGIGTGKRNLVYFSCGLGVGAGIIID 233 Query: 225 EQIYRGSLYGSGQIGHTIVN-PDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVS-T 282 +Y GS +G++ + +V+ PDG V LE L AL ++ R +Q + Sbjct: 234 GALYEGSGKSAGEVANFLVHSPDGPVP-------LEKYIGLDALLQRVRDKAPAQTLHLV 286 Query: 283 QLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFG 342 + ++ ++ AAWQ+G+P+I + +D A G ++ N +++LN + + L G F Sbjct: 287 TKETGAVSFRKVTAAWQAGDPFIRACIDEIAGLTGTAISNIISLLNCDLVILGGEYHVFA 346 Query: 343 ENWL---NTIIRQTGFNP-------FDRDEG 363 L N+I+++ F+P RD G Sbjct: 347 SQMLPIINSIVQEHAFSPVPVVASGLSRDSG 377 >UniRef50_D0LAV5 ROK family protein n=3 Tax=Actinomycetales RepID=D0LAV5_GORB4 Length = 354 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/229 (27%), Positives = 105/229 (45%), Gaps = 11/229 (4%) Query: 116 PTPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 PT QAL +++ W + LA+A G + P + + P PW V Sbjct: 36 PTAQALEHCLDRLVGELTSRWAAKAVGLAIA--GFLTPDRQMIRFAPHLPWRE-ARVAEE 92 Query: 176 LEEKLGIRVMVDNDCVMLALAE-KWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYG 234 + ++GI V ++D A+AE ++ ++ + V+ + GIG+ +I+ +IYRGS Sbjct: 93 MTRRIGIPVFAEHDANSAAVAEYRFGAAARGHNSLVLAIGTGIGAGLLIDGEIYRGSFGV 152 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQA------RVWLKSQ-PVSTQLDPE 287 + ++GH + PDG VC CG+ GC E S +AL W +SQ DP Sbjct: 153 APELGHLTIVPDGRVCSCGKRGCWERYCSGTALVDTVVELLADGNWGRSQLAADVAADPG 212 Query: 288 KLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 LT ++ A G+ + + A ++G L +I + + I L G Sbjct: 213 SLTGRRVAGAAADGDAVALAAFAQFAASLGAGLAMIADIFDPDLIVLAG 261 >UniRef50_B5YAB7 Xylose repressor n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YAB7_DICT6 Length = 375 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 63/272 (23%), Positives = 124/272 (45%), Gaps = 11/272 (4%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 MR + I +NK ++LE+L + +++ LAR+++++ A+S I+ EL + +V I Sbjct: 1 MREGRKPEYIGLYNKNLVLEILIKTGPKSRAELARISKLTKTAISEIVDELIEKNILVEI 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 +RG I P+ L ++++ + +A + +F Y + Sbjct: 61 GKVETSRGRRPTKLTINPDLK-ILAIDLSGLEGRSGIVDASGKVEEDFYY---PIKRKED 116 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 L I+ +++ + I +++++ G ++ G W + ++L E Sbjct: 117 LFELIDPLLKKYK-----NIIAISISVPGIINKYNGEVILSVGLNWRNFLLKEFLKERYP 171 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQERDFCV-INVDYGIGSSFVINEQIYRGSLYGSGQIG 239 + + ++ D L+E W ++ + + + GIG N I G G+IG Sbjct: 172 NLPIYIEKDTNSGLLSELWFGEGKKFNILFYLLFEKGIGLGIYYNGNIIEGFNNIEGEIG 231 Query: 240 HTIVNPD-GVVCDCGRYGCLETVASLSALKKQ 270 HTIVN D +C CG GCLET+AS ++++ Sbjct: 232 HTIVNGDIAEICWCGNKGCLETIASFPKIQEK 263 >UniRef50_D2SD76 ROK family protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SD76_9ACTO Length = 390 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 66/244 (27%), Positives = 103/244 (42%), Gaps = 24/244 (9%) Query: 115 APTPQALLSEIEKCWH---RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVE 171 A P+ +L+E+++ L P + + + G V+ +G P P P Sbjct: 110 ADGPRPVLAEVDRLAQLVLADAGLEPADVCAVGIGVPGPVEHSSG----RPSHPPIMPGW 165 Query: 172 VKYLLEEKLG---IRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIY 228 + + G V VDND ++AL E S + D V+ V GIG +++ ++Y Sbjct: 166 HDFPIPSAFGRYECPVYVDNDVNVMALGEMGAAGSVQ-DVLVVKVGTGIGCGVIVDGRVY 224 Query: 229 RGSLYGSGQIGHT-IVNPDG--VVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLD 285 RG+ +G IGH + PDG V C CG+ CLE +A AL + A PVS Sbjct: 225 RGAQGSAGDIGHIHVTTPDGRLVTCRCGQENCLEALAGGGALLRDA--VAAGLPVS---- 278 Query: 286 PEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENW 345 TT +++ G+ V + IG L +N N ++I + G G Sbjct: 279 ----TTREVVERAAQGDGAAIELVREAGRTIGTVLAALVNFFNPHRIVVTGGVAQAGVPL 334 Query: 346 LNTI 349 L I Sbjct: 335 LAGI 338 >UniRef50_C6PDS2 ROK family protein n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PDS2_CLOTS Length = 311 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 55/226 (24%), Positives = 108/226 (47%), Gaps = 7/226 (3%) Query: 142 NLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQN 201 ++ + + G D G+ WT VK + + + I + +DND + ALAE Sbjct: 64 SMGIGVPGVADNEKGIVLRAVNLYWTKVPLVKEI-HKYIDIPINMDNDANVAALAEGIFG 122 Query: 202 NSQERDFCV-INVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLET 260 + + V I + G+GS F++N +++ G+ + + ++GH ++ +GV+C+CG+ GC ET Sbjct: 123 AGKGTNSSVTITLGTGVGSGFILNGKVFNGAHHFAPELGHIVLGDNGVMCNCGKIGCFET 182 Query: 261 VASLSALKKQAR--VWLKSQPVSTQL---DPEKLTTAQLIAAWQSGEPWITSWVDRSANA 315 AS +AL ++ + V S + +L + E +T +I A + + + Sbjct: 183 YASATALIREGKKAVMKDSNSLILKLAGGEIESITAKNVIDAAKQFDEAAMMIFNDYVKY 242 Query: 316 IGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 + + + N +NIL+ I + G G+ L + + N +D Sbjct: 243 LAMGIVNIINILDPEVIIIGGGVANAGDFLLKPLKEEVSKNILFKD 288 >UniRef50_C8QA05 ROK family protein n=1 Tax=Pantoea sp. At-9b RepID=C8QA05_9ENTR Length = 377 Score = 76.6 bits (187), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 48/161 (29%), Positives = 78/161 (48%), Gaps = 9/161 (5%) Query: 114 DAPTPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVK 173 D P ALL E+ +C R P+ I +A+ G VDP+ G W +V Sbjct: 115 DTSDPAALLQELVECCQALRAAHPE-LIGVAMGFPGIVDPLRGWMHFSSHLGWQ---DVD 170 Query: 174 YLLEEKLGI----RVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYR 229 L + GI R+M + L ++ + + F + + GIG + V + +++ Sbjct: 171 LLTPLRRGIDLPLRIMNNVKAAALLSVQQLALDKSQSHF-YLRIAEGIGGALVQHGEVFT 229 Query: 230 GSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQ 270 GS + +G++GH V P+G C CGR GCLE + S A+++Q Sbjct: 230 GSSWTAGEVGHLTVQPNGARCSCGRLGCLEALVSQPAIQQQ 270 >UniRef50_C6CR95 ROK family protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CR95_PAESJ Length = 397 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 73/318 (22%), Positives = 137/318 (43%), Gaps = 13/318 (4%) Query: 30 KSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIAPEGDWTLCLNVT 89 K+ L I+ ++ +L ++ E ++ G + I P+ + L ++ Sbjct: 27 KAELLEAHDITSSTMTRLLDDMAKEGLILVTGLGPSKGGRKPLLYQINPDYGYIFGLEIS 86 Query: 90 PTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE---IEKCWHRHRKLWPDHTINLALA 146 + + + ++ K + + TP+ L++ + + + + + L + Sbjct: 87 RFTSTLGLFDLNMNQKSVVRWRMDETMTPERLVAHTVSLMLAFMKDHAISQSRILGLGIG 146 Query: 147 IHGQVDPVTGV---SQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNS 203 G +D +GV Q P W V + L EE G+ +++N + E W + Sbjct: 147 AVGPLDRSSGVIVNPQYFPAKGWQQ-VPICALFEEAAGLPTLLENGANTALVGEHW-SIR 204 Query: 204 QERDFCVINVDYGIG--SSFVINEQIYRGSLYGSGQIGHTIVNPDGV-VCDCGRYGCLET 260 QE + V GI S+ + + +I G + G IG I++ DG + + G YG LET Sbjct: 205 QENVEHALYVSAGISLRSAMMSHGRIVYGKVDMEGSIGQMIIDVDGPRLEESGNYGSLET 264 Query: 261 VASLSALKKQARVWLK--SQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGL 318 AS+ AL++Q R LK + + PEK+ + A +G+P+I +SA+ G+ Sbjct: 265 FASVQALERQVRTRLKVGGSLLLNNVVPEKVNLDTITAGLNAGDPFIREMFRQSASYFGV 324 Query: 319 SLYNFLNILNINQIWLYG 336 L N +N + I L G Sbjct: 325 GLANLINTFHPELIILGG 342 >UniRef50_A9B0V9 ROK family protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B0V9_HERA2 Length = 336 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 59/243 (24%), Positives = 103/243 (42%), Gaps = 11/243 (4%) Query: 114 DAPTP-QALLSEIEKCWHRHRKLWPDHTINL----ALAIHGQVDPVTGVSQTMPQAPWTT 168 D TP AL S + W ++ D I L + I GQVD +G+ + W Sbjct: 43 DTATPDHALKSLADAIWETLKQ--ADLPIRLLAGIGIGIPGQVDTQSGIVRHAVNLGWQA 100 Query: 169 PVEVKYLLEEKLGIRVMVDND--CVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQ 226 V+++ + G +++ND L + W S + +++ GI + +++ Sbjct: 101 -VDLRGFINATFGTACVIENDVRAAALGIQRYWLAGSID-SMLYVSIGTGIAAGMILDGT 158 Query: 227 IYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDP 286 +YRGS +G+IGH + C CG YGCLE + + A+ A L + P S Sbjct: 159 VYRGSHGMAGEIGHARFGSSTIRCRCGNYGCLEAIVAGPAIANYAHSLLSTFPHSQLHQL 218 Query: 287 EKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWL 346 + +TT + AA ++G+ + + +LY + + + I L G G + Sbjct: 219 DSITTPAVYAAAEAGDDLALAVAHMVGEQLAQALYTMVLAYDCDHIVLGGGVSRAGSAFF 278 Query: 347 NTI 349 I Sbjct: 279 API 281 >UniRef50_C3WAJ9 Glucokinase n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3WAJ9_FUSMR Length = 350 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 57/219 (26%), Positives = 106/219 (48%), Gaps = 9/219 (4%) Query: 143 LALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEK-WQN 201 +++ ++G VD G+S P T + + ++K +V ++ND +AL EK + Sbjct: 98 ISVVMNGLVDGEKGISIFSPHYN-TKNIPIVDRFQKKFKKKVYIENDVRAMALVEKVFGE 156 Query: 202 NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGV-VCDCGRYGCLET 260 + +F V+NV+ G+G S +N+ +Y G SG++GH +V + + C CG+ GCLET Sbjct: 157 CKKNYNFVVLNVEEGVGGSIYLNDMLYHGYGSMSGELGHMVVKRNSLEKCSCGKRGCLET 216 Query: 261 VASLSALKK----QARVWLKSQPVSTQLDP-EKLTTAQLIAAWQSGEPWITSWVDRSANA 315 S A+ K Q R+ + + LD +KL ++ + S + Sbjct: 217 EVSNRAIIKKIMTQIRINNQYSSLKKILDEGKKLEIKDVLNGVDERDMLSLSVTGEAIQY 276 Query: 316 IGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTG 354 I ++ ++++N +I LYG E N+++ + G Sbjct: 277 IAYAIDMIISVINPEKIILYGEFFQ-NEYIFNSLLSEIG 314 >UniRef50_Q97D10 XylR transcriptional regulator n=1 Tax=Clostridium acetobutylicum RepID=Q97D10_CLOAB Length = 385 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 85/389 (21%), Positives = 158/389 (40%), Gaps = 33/389 (8%) Query: 11 RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHS 70 ++ NK IL LLYR++ K ++ +S+P V + + EL E V S T G Sbjct: 6 QNSNKGKILNLLYRKRELTKLDISNEIGVSVPTVISNVNELIREGFVEESGVASSTGGRK 65 Query: 71 SGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIE---K 127 P + +++ P + N L K + E+L + ++++ I K Sbjct: 66 PIIVSFIPNSRYAFGVDINPYMARVVLTNLDLEIKYDVEFLIEELKDIKSIMKRISLIVK 125 Query: 128 CWHRHRKLWPDHTINLALAIHGQVDP---VTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184 K+ + + ++ G VD V + + W + + L + L I Sbjct: 126 EALEFTKIDEKKVLGIGFSLQGTVDEENLVLKRAINIGVKDWDFKL-FENLFQFPLFIEN 184 Query: 185 MVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVN 244 K +ER+ I+V G+G+ VI Q+Y+G +G++GH + Sbjct: 185 EA---NAAALAELKIGIAKEERNLVYISVSSGLGTGIVIEGQLYKGKNKRAGEMGHMTLV 241 Query: 245 PDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQ-----LIAAWQ 299 P G +C CGR GC E AS AL + +L K+T + ++ + Sbjct: 242 PHGKLCRCGRKGCWEMYASQKALLDEF----------NELSDVKVTKLEQFFNLIMIKNK 291 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 E + ++++ A+ I N + I + + I L G + + +L+++ + FD Sbjct: 292 VAEKCLNNYLNNLASGI----QNIVLIFDPHYIVLGGEISGYSDVYLDSLKDKI----FD 343 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYL 388 +E + ++ +L R +LG L Sbjct: 344 ENEFYNRGDFKLFPSRLKRNSSILGAALL 372 >UniRef50_C0BV65 Putative uncharacterized protein n=2 Tax=Bifidobacterium RepID=C0BV65_9BIFI Length = 374 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 40/134 (29%), Positives = 77/134 (57%), Gaps = 3/134 (2%) Query: 137 PDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALA 196 P T+ + +A+ G V+P GV + W+ + +K +E G+ V+V ND +A Sbjct: 138 PLPTLGIGIAVTGIVEP-NGVVRKSVHLGWSE-LPLKTEVENATGVPVIVGNDTNAALVA 195 Query: 197 EKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYG 256 E++ + +I++ G+G++ +N+ I GS + +G+I H +V+P+G +C+CG+ G Sbjct: 196 ERFFGDCSPNSM-LISIGRGVGAALCLNDVIIEGSSFTAGEIAHVVVDPNGPICECGKQG 254 Query: 257 CLETVASLSALKKQ 270 CLE+ S L+++ Sbjct: 255 CLESFVSGDRLQQR 268 >UniRef50_A9F5U1 Transcriptional regulator of the ROK-family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F5U1_SORC5 Length = 408 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 77/267 (28%), Positives = 124/267 (46%), Gaps = 15/267 (5%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 NN+ R N+ ++L+L+ +++ LARL+ ++ P VS I++EL V ++ ES Sbjct: 10 NNRTPRELNRSLVLDLVQEHGPISRTNLARLSGLTKPTVSAIIEELLDSGSVRDVGTES- 68 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPT----PQAL 121 RG L+ D L + +E Q A A +G +++ PT P Sbjct: 69 -RGGRP-ARLLEFNDDSAAFLGIE-IGVE-QTAVAVADARGRLRA-RLEQPTVLRDPHRT 123 Query: 122 LSEIEKCWHRHRKL--WPDHTINLALAI-HGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 + +I + + +L P + A A+ G ++ +GV P W V+ L Sbjct: 124 VRDIVELLPKVLQLSGVPRKRLRGACAVLPGLIERPSGVCVLAPNLGWER-FPVRAELSR 182 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQERDFCV-INVDYGIGSSFVINEQIYRGSLYGSGQ 237 L ++V V N A+AE ++ V I V G+G+ V + +++ G SG+ Sbjct: 183 ALRMQVPVYNLPQAAAVAEGELGAARGHASYVWIYVGLGVGAGLVADGRLFFGMQGYSGE 242 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASL 264 IGH V DG C CGR GCLET AS+ Sbjct: 243 IGHCRVADDGPPCGCGRRGCLETFASV 269 >UniRef50_C1XFK4 Transcriptional regulator/sugar kinase n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XFK4_MEIRU Length = 290 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 47/151 (31%), Positives = 77/151 (50%), Gaps = 12/151 (7%) Query: 194 ALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCG 253 A A ++ ++ +F I + GIG+ VI Q+YRG +G++GH VN DG C CG Sbjct: 96 AAARRFLRSTSAENFIYILLQQGIGAGIVIKRQVYRGHHGFAGELGHMSVNMDGEPCPCG 155 Query: 254 RYGCLETVASLSALK-KQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRS 312 GCLE VA +A++ + R+ +S P+S T A+L A G P +++ Sbjct: 156 NRGCLENVAGTTAIEFRYLRLTKQSLPLS--------TIAELAHA---GNPQALLSFEQA 204 Query: 313 ANAIGLSLYNFLNILNINQIWLYGRSCAFGE 343 A+G + N +N+ + + L G A+ + Sbjct: 205 GRALGWAAVNLVNLFDPELLVLGGPGAAYAD 235 >UniRef50_A9B0H5 ROK family protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B0H5_HERA2 Length = 414 Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 70/337 (20%), Positives = 156/337 (46%), Gaps = 23/337 (6%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGH 69 +R N+ ++L+L+ R+ R +++ +A+ ++S VS+I+ +L V + G Sbjct: 14 MRELNRALVLQLIRREGRISRADIAKHTKLSRSTVSSIINDLIDASLVTETGIGTSKGGR 73 Query: 70 SSGTWLIAPEGDWTLCLNVTPTSIECQVA--NACLSPKGEFEYLQIDAPT-PQALLSEIE 126 + ++ + L+V+ ++ + NA + + + + D PT L+ ++ Sbjct: 74 RPIILEFNYQANYIIGLDVSRNAVSAVITDLNARICSRRQISFNVNDGPTVGMPLIKQLI 133 Query: 127 KCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMV 186 + + + + G +D G + P P V ++ L + + V + Sbjct: 134 STMLTESPVGRGRISAIGVGVPGPLDFRNGRTIAPPVMPGWDNVPIREELSQTFRLPVSI 193 Query: 187 DNDCVMLALAE-KWQNNSQERDFCVINVD-YGIGSSFVINEQIYRGSLYGSGQIGHTIVN 244 DND + A+AE +W ++ + + GIG+ +I+ ++RGS+ +G++GHT ++ Sbjct: 194 DNDANLAAMAEYRWGAGQGAQNMVYLYMSSAGIGAGLIIDSHLFRGSIGSAGEVGHTTLS 253 Query: 245 PDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQ-----LIAAWQ 299 V + +G + SL AL Q V ++ +KL +A L+ + Sbjct: 254 ----VENDESFGPINA-GSLEALASQITVLRLAR-------EQKLISADDDVHTLVRKAE 301 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 S P I + + R+A+ +G+++ + +NI N +++ + G Sbjct: 302 S-SPEIQAILRRTAHYLGVAIASIINIFNPDRVVIGG 337 >UniRef50_Q1AZ04 ROK domain containing protein n=2 Tax=Actinobacteria (class) RepID=Q1AZ04_RUBXD Length = 402 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 80/326 (24%), Positives = 124/326 (38%), Gaps = 26/326 (7%) Query: 22 LYRQKRA-NKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIAPEG 80 L R RA ++ LA + ++ VS ++ L VV + T G + Sbjct: 15 LIRSGRARTRAELAAVTGLTRATVSQRVEVLMEAGLVVETKEGVSTGGRPPMVLGFNKDA 74 Query: 81 DWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLS--------EIEKCWHRH 132 L ++ T VA+ P E A P A+L +E+ Sbjct: 75 GVVLAADLGATHCRLAVADLGGRPLVELPADLDIAQGPDAVLGWVQDRFEELLEEAGRSR 134 Query: 133 RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG-IRVMVDNDCV 191 ++W + + + G VD G + + P P V + E+ G + V+VDND Sbjct: 135 EEVW-----GIGVGVPGPVDFARGQAVSPPIMPGWDRVPIPERFRERFGGVPVLVDNDVN 189 Query: 192 MLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT-IVNPDGVVC 250 ++AL E N S + V GIG V +I+RG +G IGH I + VC Sbjct: 190 IMALGEHRVNWSDVEHLLFVKVATGIGCGIVAGGRIHRGERGAAGDIGHIRISGHEETVC 249 Query: 251 DCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVD 310 CG C+E VA AL KQ + L + ++ ++G P V Sbjct: 250 RCGNVACVEAVAGGWALAKQL----------SGLGYPATGSRDVVGLVRAGNPAAARLVR 299 Query: 311 RSANAIGLSLYNFLNILNINQIWLYG 336 + IG L + +N N I + G Sbjct: 300 TAGELIGEVLASLVNFFNPAVIIIGG 325 >UniRef50_A3TWQ2 Xylose repressor, putative n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TWQ2_9RHOB Length = 405 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/227 (24%), Positives = 100/227 (44%), Gaps = 25/227 (11%) Query: 118 PQALLSEIEKCWH----RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPV--- 170 P L+ E+ + RH L L+L I G V+ TG W++ V Sbjct: 125 PDGLVQEVRRALDAACARH-GLDTARIAGLSLGIPGFVNGETGFMH------WSSSVTER 177 Query: 171 --EVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQI 227 + L + L +DND ++A AE + +F V+ +++G+G ++N ++ Sbjct: 178 NVDFAPLFRKHLPCPTFLDNDANLVAKAEHLFGAGRGLSNFLVVTLEHGVGMGIILNGEL 237 Query: 228 YRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPE 287 YRG ++GH V G +C CG+ GCLE AL + +S + D Sbjct: 238 YRGERGCGAELGHMKVQFGGALCQCGQRGCLEAYVGDYALVRDTSTGQQSDAAKSIQD-- 295 Query: 288 KLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWL 334 ++ A ++G+ +DR++ +G++L N +N+ + I L Sbjct: 296 ------ILHAARNGDRLAREVLDRASQILGVALANLVNLFDPEHIVL 336 >UniRef50_B0MWK5 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MWK5_9BACT Length = 410 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 79/358 (22%), Positives = 156/358 (43%), Gaps = 32/358 (8%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQ---ISIPAVSNILQELESEKRVVNIDD 62 N + I H N ++ + TL+ L + IS+P ++ ++QEL E V ++ Sbjct: 15 NLKGISHKNNLFKRNIIAHMAVNGECTLSELTKELHISVPTITKLVQELVQENIVSDLGK 74 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQID---APTPQ 119 G + +A + +N+ ++ + + L E L D PQ Sbjct: 75 VETPGGRRPNVFGLASSAIYFAGVNIGRDNMSFLITD--LHNNIVKEELLTDFELQDRPQ 132 Query: 120 AL-------LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEV 172 L I+ C K+ + + +++ G+V+P TG S + ++ + Sbjct: 133 CLEKICSNIAHFIDTCGVERAKI-----LGVGVSVSGRVNPTTGRSY---RYFTSSEQSL 184 Query: 173 KYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGS 231 + ++E+++GIRV+++ND AE + S+ E D +++ G+ V+N ++Y G Sbjct: 185 RDMIEQRIGIRVLLENDSQARCYAEYTNSKSKDEMDVLYLHLGRGLAIGIVMNGKLYYGK 244 Query: 232 LYGSGQIGHTIVNPDGVVCDCGRYGCLET-VASLSALKKQARVWLKSQPVSTQL-----D 285 +G+ GH + ++C CG+ GCLET V+ ++ +K R L SQ V+T L Sbjct: 245 SGFAGEFGHIPFFDNEIICSCGKKGCLETEVSGIAIEQKFGR--LISQGVNTILREKYNK 302 Query: 286 PEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGE 343 E + ++I A + + ++ G ++ +N N + + G G+ Sbjct: 303 HEAIHVDEIIDAAKHDDNLSIELIEEVGEKAGKAVAFLINTFNPETVIVGGELAEAGD 360 >UniRef50_C6J3G4 Transcriptional repressor n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J3G4_9BACL Length = 304 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/189 (24%), Positives = 89/189 (47%), Gaps = 14/189 (7%) Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYG 234 L+ + + ++ND ALAEKW +++ + F I + GIG+ + ++ G+ Sbjct: 100 LKRYFSLPIRLENDATAAALAEKWLGAAKDAEHFVFITISTGIGAGIYSHGKLITGASGN 159 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQL 294 +G +GH +V+P C CG+ GC E VAS +A+ +QA ++L ++++ + Sbjct: 160 AGDVGHIVVDPSVGTCVCGQKGCWEFVASGTAVARQA----------SELLGREVSSKEA 209 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI---IR 351 +G+P I V + IG+ +N + ++ + G G+ N + + Sbjct: 210 FDLAAAGQPVIQELVAKVFENIGVGCVTLINTFDPEKLVIGGGVSQVGDPLFNAVRDYVS 269 Query: 352 QTGFNPFDR 360 + NP R Sbjct: 270 KYALNPSGR 278 >UniRef50_C0QYS2 Transcriptional regulator/sugar kinase n=2 Tax=Brachyspira RepID=C0QYS2_BRAHW Length = 244 Score = 75.9 bits (185), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 50/168 (29%), Positives = 85/168 (50%), Gaps = 6/168 (3%) Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVI---NVDYGIGSSFVINEQIYRGSLYG 234 +K I ND M AL E + +E+D+ + + G+G FV+N +++ GSL G Sbjct: 27 DKFNIPTKTANDASMAALGEAKYGSGKEKDYQSVMFVTLGTGVGGGFVLNGKLFTGSLGG 86 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQ- 293 +G+IGH V PDG C+CG GC+E AS + A+ + + T L E+L + Sbjct: 87 AGEIGHVFVVPDGDKCNCGSSGCIERYASATGFIAMAKQKIHKGVIPTTLTYEELDKGKA 146 Query: 294 --LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSC 339 L A + G+ + + +G+S+ LN+L+++ + + G C Sbjct: 147 KALFDAAKKGDALAKETIAECSYYLGMSIAQALNMLDLDLVLIGGGLC 194 >UniRef50_C0W6S3 Xylose operon repressor n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W6S3_9ACTO Length = 379 Score = 75.9 bits (185), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 64/255 (25%), Positives = 118/255 (46%), Gaps = 3/255 (1%) Query: 18 ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIA 77 I+ L+ + +++++AR +S +++++ + L E + ++ + G + + Sbjct: 13 IIGLIGTRGPLSRASIARQLGVSPASITHLTRSLIEEGVLREAGTDASSGGRPATLLDLN 72 Query: 78 PEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWP 137 + L + +TP + +G L +D +P AL +I + + + Sbjct: 73 DRRRYALGVKITPNHLAVTEVEMN-KEQGPSTSLDLDMRSPGAL-DQITQAVAQAARSHQ 130 Query: 138 DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAE 197 D + + LAI G P T P W V++ L+ E+ G+ V++DND L LA Sbjct: 131 DELMGVGLAIPGFSKPQDPDIVTAPILGWNQ-VDLGRLVRERTGLPVIIDNDVNALLLAH 189 Query: 198 KWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGC 257 + + D +I + GIG++F QI G G+G++GHT++ V C CG GC Sbjct: 190 RLYSPQPTGDDLLITIGIGIGAAFTSQGQIIHGGRGGAGELGHTMITESDVPCSCGLSGC 249 Query: 258 LETVASLSALKKQAR 272 LE + L +QAR Sbjct: 250 LEALIGDDGLVRQAR 264 >UniRef50_D1R588 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R588_9CHLA Length = 331 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 73/264 (27%), Positives = 124/264 (46%), Gaps = 12/264 (4%) Query: 82 WTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWPDHTI 141 WT+ ++V T IE + NA + + A++ +I K +K D Sbjct: 6 WTIGIDVGGTKIETALVNADGTILFRSKTHTKAKDGLDAIIHQIGKVIQDLQKQTSDSIA 65 Query: 142 NLALAIHGQVDPVTGVSQTMPQAPW-TTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQ 200 + + I GQ+DP + + P P+ TP+ K LE + + +DND V A +W Sbjct: 66 GIGIGIPGQIDPASATILSTPNLPFKNTPL--KKRLESFTSLPIYIDND-VRTATRGEWI 122 Query: 201 NNSQE--RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCL 258 + + +F + + G+G VIN QI+ G+ Y +G+IGH V +G +C CG YGC+ Sbjct: 123 FGAGKGCANFVCMFLGTGVGGGIVINNQIFSGNSYTAGEIGHMTVELNGPLCTCGNYGCV 182 Query: 259 ETVASLSALKKQARVWLKSQPVSTQL------DPEKLTTAQLIAAWQSGEPWITSWVDRS 312 E + A+ K+A+ LK T L + +K+ A + A + +P V + Sbjct: 183 EAFSGGWAISKRAQTKLKKHGKLTPLLELAQGNVDKIDAALVFEAMKLHDPIAIEVVSDA 242 Query: 313 ANAIGLSLYNFLNILNINQIWLYG 336 ANA+ + +N LN ++ + G Sbjct: 243 ANALSACASSIVNALNPKRLIIGG 266 >UniRef50_Q89SY2 Bll2268 protein n=1 Tax=Bradyrhizobium japonicum RepID=Q89SY2_BRAJA Length = 423 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 85/351 (24%), Positives = 151/351 (43%), Gaps = 33/351 (9%) Query: 11 RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQT---- 66 R N+ ++ELL RQ + LAR +S PAVS + L +E+ + + + + Sbjct: 19 RGSNRGRLVELLRRQGPLPRVALARSTGLSFPAVSGLTSRLMAEELLCETETAATSWSDD 78 Query: 67 -------------RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVAN----ACLSPKGEFE 109 RG + PE + ++V IE +A+ + Sbjct: 79 TDDEDADGLNGRRRGRPVVLLTLNPEFGRIIAVSVRMNLIETLIADFGGSGLAQSRLALP 138 Query: 110 YLQIDAPTPQAL-LSEIEKCWHRHRKLWPDH-TINLALAIHGQVDPVTGVSQTMPQAPWT 167 +DA + L +++I P H + + LA+ G V+ TG + P A Sbjct: 139 TRALDAGALRDLVIAQINAMLDA--TATPRHQLLGIGLALQGIVNADTGRTLWSP-ALSI 195 Query: 168 TPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDF-CVINVDYGIGSSFVINEQ 226 T V++ + + G+ V++ ND V +ALA + I V +GIG V + + Sbjct: 196 TDVDLATPIRQAFGVEVVMANDAVAVALALTAAEPALAEGLSATIMVGHGIGMGVVADGE 255 Query: 227 IYRGSLYGSG-QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLD 285 + +G+G +IGH + PDG C CG+ GC+E + AL + AR +L P +Q Sbjct: 256 AH----WGAGSEIGHVKLAPDGPQCRCGQRGCIEAYLADYALYRDARTFLDLPPADSQ-Q 310 Query: 286 PEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 P + A L G+P + + ++ A+ ++ +++L + + L G Sbjct: 311 PSEAQMALLRERALGGDPRLENLFQQAGRALAEAVAATISVLRPHHVILAG 361 >UniRef50_C0QRM3 Xylose repressor n=2 Tax=Hydrogenothermaceae RepID=C0QRM3_PERMH Length = 297 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/220 (26%), Positives = 102/220 (46%), Gaps = 17/220 (7%) Query: 118 PQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 P ++ EI K ++R PD L +A+ G +D TGV P K LE Sbjct: 40 PDLIVDEIRKIVKKYR---PDI---LGVAVAGLIDKKTGVLTASPNIKPLENFPFKDELE 93 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQERDFCV-INVDYGIGSSFVINEQIYRGSLYGSG 236 L I V ++ND + A E + + + + + G+G VIN ++ G + Sbjct: 94 NSLKIPVYIENDASLAAYGEYLYGAGKGSEILICLTLGTGLGGGAVINGKLLTGVSGSAM 153 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 +IGHT + DG+ C CGR GCLE+ S L++ ++ +K++++Q+I Sbjct: 154 EIGHTTIEMDGLPCHCGRKGCLESYVSSYGLERIYYLYTD----------QKISSSQIIT 203 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 G+ ++R + + + L N ++I N ++I L G Sbjct: 204 LANEGDLTAMRSMERFSEYLSVGLMNIVHIFNPDRIVLAG 243 >UniRef50_B0PGT1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0PGT1_9FIRM Length = 378 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 60/264 (22%), Positives = 116/264 (43%), Gaps = 29/264 (10%) Query: 18 ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIA 77 I ++Y++K+ ++ +AR++ IS+P +S L L + + T G Sbjct: 21 IYRIIYQEKKTSRQNIARISGISLPTISQHLNLLTDAGLIRTVGSFESTGGRKPNIISYV 80 Query: 78 PEGDWTLCLNVTPTSIECQVANACLSPKGE----------FEYLQIDAPTPQALLSEIEK 127 P+ + L +++T + + + L+ EY Q + QALL E+ Sbjct: 81 PDAKFALGIDITRNHLSIVLIDLALNIIASQRLRLPFCDSDEYFQTLSDQAQALL---ER 137 Query: 128 CWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV--- 184 H KL + +++ +H + D T + T ++V + E+L + Sbjct: 138 HLADHAKLL---GVGISMPVHVREDQKT--------ISYATVIDVSSNIYERLKAFIPAP 186 Query: 185 -MVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV 243 ++ ND LAE W ++S E+ +++ +G + + ++IY G S + GH + Sbjct: 187 YLIFNDANSAGLAENWDSDS-EQPMIYLSLSSSVGGANMTGKEIYMGVNSRSAEFGHLCI 245 Query: 244 NPDGVVCDCGRYGCLETVASLSAL 267 P+G C CG++GCL+ S L Sbjct: 246 VPNGRRCYCGQHGCLDAYCSTKLL 269 >UniRef50_C4RIZ4 Transcriptional repressor n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RIZ4_9ACTO Length = 407 Score = 75.5 bits (184), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 52/192 (27%), Positives = 86/192 (44%), Gaps = 15/192 (7%) Query: 152 DPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI-RVMVDNDCVMLALAEKWQNNS-QERDFC 209 DPV T P W V + L+ GI V+V+ND L A++W F Sbjct: 178 DPVV---PTSPFLGWRN-VPLGGLVAAATGIPAVVVENDVRALTAAQQWFGAGVGHSSFA 233 Query: 210 VINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKK 269 ++ V G+G VI +++ RG+ G+G +GH ++ G +C+ G GC S +A+++ Sbjct: 234 LVTVGAGLGCGLVIGDRLVRGAGRGTGLVGHMSIHDSGPLCEMGHRGCARAYVSSAAIRR 293 Query: 270 QARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNI 329 V+T LD LT +A G+P ++ + A+G + NI + Sbjct: 294 A---------VATTLDRPDLTFEACLALAAEGQPAARRILEEAGEALGQVVATVANITGV 344 Query: 330 NQIWLYGRSCAF 341 + L G + A Sbjct: 345 QLVILSGEAVAM 356 >UniRef50_C9XQA7 Xylose repressor n=6 Tax=Clostridium difficile RepID=C9XQA7_CLODC Length = 408 Score = 75.1 bits (183), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 59/259 (22%), Positives = 121/259 (46%), Gaps = 10/259 (3%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRV--VNIDDESQTR 67 IR N+ ++LE + + +++++A ++ +S I ++L E V + I + + + Sbjct: 30 IREMNERLVLEQIIKNGPISRASIASTIGLNKATISAITKKLIDESLVHEIGIGNSTHSG 89 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVA--NACLSPKGEFEYLQIDAPTPQALLSEI 125 G + +L +++ I ++ + + + +Q+ L+ EI Sbjct: 90 GRKPILLVFNKCAGISLSMDIGYDYIFSSLSYLDGTIINSKKLTDIQVSKDNVIQLIDEI 149 Query: 126 EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWT-TPVEVKYLLEEKLGIRV 184 ++ + P I L LAIHG +T ++ + + +++ +L +K + Sbjct: 150 INSYNISKIDTPYKVIGLTLAIHG----ITCENKVLFTPYYNLNEIDLYSILSKKYDFPI 205 Query: 185 MVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVN 244 ++N+ + ALAE + + +++ G GS +IN ++Y G SG+IGHTI+ Sbjct: 206 HIENEANLTALAENTFS-TVHNSLLSLSIHSGFGSGIIINNKLYSGRNGMSGEIGHTIIM 264 Query: 245 PDGVVCDCGRYGCLETVAS 263 P+G +C CG GCLE S Sbjct: 265 PNGKLCPCGNRGCLEQYCS 283 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P76586 Uncharacterized protein yphH n=68 Tax=Enterobact... 488 e-136 UniRef50_A8VZR7 Methyltransferase type 11 n=1 Tax=Bacillus selen... 357 3e-97 UniRef50_A7VQ47 Putative uncharacterized protein n=1 Tax=Clostri... 354 2e-96 UniRef50_B0KBZ3 ROK family protein n=6 Tax=Thermoanaerobacter Re... 352 1e-95 UniRef50_Q9KDW7 Transcriptional repressor of the xylose operon n... 352 1e-95 UniRef50_Q67NW4 Transcriptional repressor n=1 Tax=Symbiobacteriu... 347 3e-94 UniRef50_D2LQJ9 ROK family protein n=2 Tax=Bacillus cellulosilyt... 344 3e-93 UniRef50_B8D168 ROK family protein n=12 Tax=Clostridia RepID=B8D... 343 6e-93 UniRef50_B8CZW2 ROK family protein n=1 Tax=Halothermothrix oreni... 339 1e-91 UniRef50_Q65CW6 Putative uncharacterized protein n=1 Tax=Bacillu... 338 2e-91 UniRef50_P94490 Xylose repressor n=3 Tax=Bacillus RepID=XYLR1_BACSU 337 4e-91 UniRef50_B8CZI2 ROK family protein n=1 Tax=Halothermothrix oreni... 334 3e-90 UniRef50_C6IY97 ROK family protein n=1 Tax=Paenibacillus sp. ora... 334 5e-90 UniRef50_A1HM15 ROK family protein n=1 Tax=Thermosinus carboxydi... 332 2e-89 UniRef50_Q2RLD7 ROK n=1 Tax=Moorella thermoacetica ATCC 39073 Re... 330 5e-89 UniRef50_UPI000178870E ROK family protein n=1 Tax=Geobacillus sp... 329 1e-88 UniRef50_B8E382 ROK family protein n=2 Tax=Dictyoglomus RepID=B8... 328 2e-88 UniRef50_Q1CY52 Transcriptional regulator, ROK family n=1 Tax=My... 325 2e-87 UniRef50_C0ZA78 Probable transcriptional regulator n=1 Tax=Brevi... 322 1e-86 UniRef50_C6D1T9 ROK family protein n=1 Tax=Paenibacillus sp. JDR... 321 3e-86 UniRef50_Q1Z3R9 Putative uncharacterized protein n=1 Tax=Photoba... 321 3e-86 UniRef50_B8I1T3 ROK family protein n=2 Tax=Clostridium RepID=B8I... 319 1e-85 UniRef50_B1YIH1 ROK family protein n=1 Tax=Exiguobacterium sibir... 318 3e-85 UniRef50_C8WTP1 ROK family protein n=2 Tax=Alicyclobacillus acid... 316 7e-85 UniRef50_Q8ELU2 Transcriptional repressor of the xylose operon n... 314 3e-84 UniRef50_UPI0001C3682C ROK family protein n=1 Tax=Clostridium ha... 314 4e-84 UniRef50_Q9K992 Transcriptional repressor of the xylose operon n... 314 4e-84 UniRef50_C8WRQ2 ROK family protein n=2 Tax=Alicyclobacillus acid... 313 6e-84 UniRef50_Q724N5 Xylose repressor protein n=19 Tax=Listeria RepID... 312 2e-83 UniRef50_Q65DK2 Transcriptional regulator XylR n=2 Tax=Bacillus ... 311 2e-83 UniRef50_D1CIH3 ROK family protein n=1 Tax=Thermobaculum terrenu... 309 9e-83 UniRef50_C5ETA5 ROK domain containing protein n=2 Tax=Clostridia... 309 1e-82 UniRef50_A8FE34 Transcriptional regulator n=5 Tax=Bacillus RepID... 308 2e-82 UniRef50_UPI00017885B4 ROK family protein n=1 Tax=Geobacillus sp... 308 3e-82 UniRef50_A5V137 ROK family protein n=2 Tax=Roseiflexus RepID=A5V... 307 4e-82 UniRef50_Q8EL07 Transcriptional repressor of the xylose operon n... 307 5e-82 UniRef50_C5CH51 ROK family protein n=1 Tax=Kosmotoga olearia TBF... 307 7e-82 UniRef50_D1BAX4 Transcriptional regulator/sugar kinase n=2 Tax=A... 305 1e-81 UniRef50_A4FQW3 Transcriptional regulator, ROK family n=1 Tax=Sa... 305 2e-81 UniRef50_Q82LB9 Putative ROK-family transcriptional regulator n=... 304 4e-81 UniRef50_A3DCE9 ROK domain containing protein n=2 Tax=Clostridiu... 303 6e-81 UniRef50_Q5WCD4 Transcriptional repressor of the xylose operon n... 302 2e-80 UniRef50_C6D7F4 ROK family protein n=2 Tax=Paenibacillus sp. JDR... 301 3e-80 UniRef50_A7VWZ1 Putative uncharacterized protein n=1 Tax=Clostri... 301 3e-80 UniRef50_C7QZA5 ROK family protein n=1 Tax=Jonesia denitrificans... 301 4e-80 UniRef50_UPI0001788127 ROK family protein n=1 Tax=Geobacillus sp... 301 4e-80 UniRef50_A9BHH0 ROK family protein n=1 Tax=Petrotoga mobilis SJ9... 300 4e-80 UniRef50_B0K1L9 ROK family protein n=9 Tax=Thermoanaerobacterale... 300 4e-80 UniRef50_C5D498 ROK family protein n=8 Tax=Geobacillus RepID=C5D... 300 5e-80 UniRef50_Q7MLY6 Transcriptional regulator n=62 Tax=Gammaproteoba... 299 1e-79 UniRef50_C6CXN7 ROK family protein n=1 Tax=Paenibacillus sp. JDR... 299 1e-79 UniRef50_A9B0W0 ROK family protein n=1 Tax=Herpetosiphon auranti... 298 2e-79 UniRef50_Q44406 Xylose repressor n=4 Tax=Clostridia RepID=XYLR_A... 298 2e-79 UniRef50_B4V8E4 ROK-family transcriptional regulator n=5 Tax=Str... 298 3e-79 UniRef50_B2IDS2 ROK family protein n=2 Tax=Rhizobiales RepID=B2I... 298 3e-79 UniRef50_UPI0001C31B1F ROK family protein n=1 Tax=Conexibacter w... 297 7e-79 UniRef50_A8L0L3 ROK family protein n=25 Tax=Actinomycetales RepI... 295 2e-78 UniRef50_C7M5N9 ROK family protein n=21 Tax=Bacteroidetes RepID=... 295 2e-78 UniRef50_C9YT50 Putative ROK family transcriptional regulator n=... 295 2e-78 UniRef50_Q1AZ04 ROK domain containing protein n=2 Tax=Actinobact... 294 5e-78 UniRef50_P0AF22 N-acetylglucosamine repressor n=95 Tax=Gammaprot... 293 6e-78 UniRef50_A8VRA6 Nitrilase/cyanide hydratase and apolipoprotein N... 291 3e-77 UniRef50_A8F6K2 ROK family protein n=1 Tax=Thermotoga lettingae ... 290 5e-77 UniRef50_Q64GL6 Rep n=2 Tax=Actinobacteria (class) RepID=Q64GL6_... 289 9e-77 UniRef50_A9B0H5 ROK family protein n=1 Tax=Herpetosiphon auranti... 289 1e-76 UniRef50_A6TUP6 ROK family protein n=1 Tax=Alkaliphilus metallir... 289 1e-76 UniRef50_D2PV61 ROK family protein n=1 Tax=Kribbella flavida DSM... 289 2e-76 UniRef50_D2SD76 ROK family protein n=1 Tax=Geodermatophilus obsc... 288 3e-76 UniRef50_C6Y2I3 ROK family protein n=4 Tax=Sphingobacteriales Re... 287 4e-76 UniRef50_D2ASC3 Transcriptional repressor of the xylose operon n... 287 4e-76 UniRef50_Q47NL3 Putative transcriptional repressor protein n=1 T... 287 5e-76 UniRef50_C5CNA8 ROK family protein n=1 Tax=Variovorax paradoxus ... 286 1e-75 UniRef50_A0KIG1 N-acetylglucosamine repressor n=151 Tax=Gammapro... 285 1e-75 UniRef50_D1BCW6 Transcriptional regulator/sugar kinase n=1 Tax=S... 285 2e-75 UniRef50_C6Y2I2 ROK family protein n=5 Tax=Bacteroidetes RepID=C... 285 2e-75 UniRef50_Q0FFU4 Xylose operon repressor n=6 Tax=Rhodobacterales ... 284 3e-75 UniRef50_C7PW32 ROK family protein n=1 Tax=Catenulispora acidiph... 284 4e-75 UniRef50_A9F5U1 Transcriptional regulator of the ROK-family n=1 ... 284 4e-75 UniRef50_A9KTE3 ROK family protein n=1 Tax=Clostridium phytoferm... 283 6e-75 UniRef50_D2PL28 ROK family protein n=18 Tax=Actinomycetales RepI... 283 1e-74 UniRef50_Q1IZX8 ROK domain protein n=1 Tax=Deinococcus geotherma... 282 1e-74 UniRef50_C7PY53 ROK family protein n=1 Tax=Catenulispora acidiph... 282 1e-74 UniRef50_A9WVF3 Transcriptional regulator, ROK family n=4 Tax=Mi... 282 1e-74 UniRef50_C1D0G6 Putative transcriptional regulator, NagC family ... 281 3e-74 UniRef50_UPI0001C357A7 transcriptional repressor n=1 Tax=Clostri... 280 5e-74 UniRef50_C1I2A3 Xylose repressor protein n=1 Tax=Clostridium sp.... 280 5e-74 UniRef50_C9L9I3 Putative regulator n=1 Tax=Blautia hansenii DSM ... 280 6e-74 UniRef50_C6PY82 ROK family protein n=1 Tax=Clostridium carboxidi... 279 1e-73 UniRef50_UPI0001C3141A ROK family protein n=1 Tax=Conexibacter w... 278 2e-73 UniRef50_UPI0001C31CF6 ROK family protein n=1 Tax=Conexibacter w... 278 2e-73 UniRef50_A1SS79 ROK family protein n=2 Tax=Psychromonas RepID=A1... 278 3e-73 UniRef50_A6LW15 ROK family protein n=5 Tax=Clostridium RepID=A6L... 277 6e-73 UniRef50_C6A8T4 ROK family transcriptional regulator n=7 Tax=Bif... 276 9e-73 UniRef50_A3TWQ2 Xylose repressor, putative n=1 Tax=Oceanicola ba... 276 1e-72 UniRef50_C5CH81 ROK family protein n=1 Tax=Kosmotoga olearia TBF... 276 1e-72 UniRef50_A6X1U5 ROK family protein n=3 Tax=Rhizobiales RepID=A6X... 276 1e-72 UniRef50_C5ESH3 Glucokinase n=1 Tax=Clostridiales bacterium 1_7_... 275 2e-72 UniRef50_C7Q516 ROK family protein n=1 Tax=Catenulispora acidiph... 275 2e-72 UniRef50_B5I1X5 ROK domain-containing protein n=8 Tax=Streptomyc... 275 2e-72 UniRef50_A5FUR2 ROK family protein n=1 Tax=Acidiphilium cryptum ... 274 4e-72 UniRef50_B2V1I0 Putative transcriptional repressor of the xylose... 274 4e-72 UniRef50_D2PSG4 ROK family protein n=1 Tax=Kribbella flavida DSM... 274 5e-72 UniRef50_A9WM33 Glucokinase n=4 Tax=Micrococcaceae RepID=A9WM33_... 274 5e-72 UniRef50_Q024A9 ROK family protein n=1 Tax=Candidatus Solibacter... 273 6e-72 UniRef50_B5GK61 ROK family protein n=2 Tax=Streptomyces RepID=B5... 273 8e-72 UniRef50_A8RG91 Putative uncharacterized protein n=1 Tax=Clostri... 273 1e-71 UniRef50_Q9KEZ9 Transcriptional repressor of the xylose operon n... 272 1e-71 UniRef50_Q97D10 XylR transcriptional regulator n=1 Tax=Clostridi... 272 1e-71 UniRef50_C6LF86 Putative xylose repressor n=1 Tax=Bryantella for... 272 2e-71 UniRef50_C1YJZ1 Transcriptional regulator/sugar kinase n=1 Tax=N... 271 3e-71 UniRef50_Q1GMG9 ROK domain protein n=6 Tax=Rhodobacteraceae RepI... 271 3e-71 UniRef50_C7R1E2 ROK family protein n=1 Tax=Jonesia denitrificans... 271 4e-71 UniRef50_P50456 Protein mlc n=167 Tax=Gammaproteobacteria RepID=... 270 6e-71 UniRef50_UPI00017899E8 ROK family protein n=1 Tax=Geobacillus sp... 270 8e-71 UniRef50_C1F498 ROK family protein n=1 Tax=Acidobacterium capsul... 270 9e-71 UniRef50_D1BD00 Transcriptional regulator/sugar kinase n=4 Tax=A... 270 9e-71 UniRef50_B8FTN1 ROK family protein n=3 Tax=Clostridiales RepID=B... 270 9e-71 UniRef50_D0GID9 Putative xylose repressor n=1 Tax=Leptotrichia g... 269 1e-70 UniRef50_UPI0001C35AB4 xylose repressor protein n=1 Tax=Clostrid... 268 2e-70 UniRef50_B0RFZ3 Putative ROK-family transcriptional regulator n=... 268 2e-70 UniRef50_A9WJ57 ROK family protein n=2 Tax=Chloroflexus RepID=A9... 268 2e-70 UniRef50_B0MWK5 Putative uncharacterized protein n=1 Tax=Alistip... 268 2e-70 UniRef50_Q47PH9 Putative xylose repressor n=1 Tax=Thermobifida f... 268 3e-70 UniRef50_A0P1K5 Xyl repressor n=2 Tax=Labrenzia RepID=A0P1K5_9RHOB 268 3e-70 UniRef50_C7MQX8 Transcriptional regulator/sugar kinase n=2 Tax=S... 267 4e-70 UniRef50_A1WMZ8 ROK family protein n=2 Tax=Proteobacteria RepID=... 267 5e-70 UniRef50_A9WTI5 Transcriptional regulator, ROK family n=1 Tax=Re... 267 6e-70 UniRef50_B8CYI5 Glucokinase n=1 Tax=Halothermothrix orenii H 168... 267 6e-70 UniRef50_A0LSD8 ROK family protein n=1 Tax=Acidothermus cellulol... 267 7e-70 UniRef50_C9LAU2 Transcriptional repressor of the xylose operon n... 267 7e-70 UniRef50_C9XQA7 Xylose repressor n=6 Tax=Clostridium difficile R... 267 8e-70 UniRef50_A5ZML3 Putative uncharacterized protein n=1 Tax=Ruminoc... 266 1e-69 UniRef50_A8UDG8 Xylose repressor protein n=2 Tax=Firmicutes RepI... 266 1e-69 UniRef50_A4BCC4 Probable transcriptional regulator n=1 Tax=Reine... 266 1e-69 UniRef50_C9ZFY3 Putative xylose repressor n=2 Tax=Streptomyces R... 266 1e-69 UniRef50_B0PG67 Putative uncharacterized protein n=1 Tax=Anaerot... 265 1e-69 UniRef50_C4RIY1 ROK-family transcriptional regulator n=1 Tax=Mic... 265 2e-69 UniRef50_C5EN99 Predicted protein n=1 Tax=Clostridiales bacteriu... 265 2e-69 UniRef50_B7DT25 ROK family protein n=1 Tax=Alicyclobacillus acid... 265 2e-69 UniRef50_C5BZR0 ROK family protein n=3 Tax=Micrococcineae RepID=... 265 2e-69 UniRef50_A6EIN5 ROK n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIN5_9SPHI 265 2e-69 UniRef50_B8E0R0 ROK family protein n=2 Tax=Dictyoglomus RepID=B8... 265 2e-69 UniRef50_Q0SE61 Possible xylose repressor n=11 Tax=Actinomycetal... 265 3e-69 UniRef50_C0D3V9 Putative uncharacterized protein n=1 Tax=Clostri... 264 3e-69 UniRef50_A0AF76 XylR protein n=1 Tax=Listeria welshimeri serovar... 264 4e-69 UniRef50_D2QLA5 ROK family protein n=1 Tax=Spirosoma linguale DS... 264 4e-69 UniRef50_C6B3W7 ROK family protein n=11 Tax=Rhizobiaceae RepID=C... 264 4e-69 UniRef50_C6JR29 XylR transcriptional regulator n=2 Tax=Fusobacte... 263 5e-69 UniRef50_A3UNW3 Probable transcriptional repressor in the Rok (N... 263 6e-69 UniRef50_C5EFJ1 Xylose repressor n=3 Tax=Clostridiales RepID=C5E... 263 9e-69 UniRef50_C7Q736 ROK family protein n=1 Tax=Catenulispora acidiph... 263 9e-69 UniRef50_C7PXL8 ROK family protein n=2 Tax=Actinomycetales RepID... 263 1e-68 UniRef50_B8D084 ROK family protein n=1 Tax=Halothermothrix oreni... 262 1e-68 UniRef50_C6W7D4 ROK family protein n=1 Tax=Dyadobacter fermentan... 262 2e-68 UniRef50_B5GCP5 Transcriptional regulator n=2 Tax=Streptomyces R... 262 2e-68 UniRef50_A1SG81 ROK family protein n=2 Tax=Nocardioides sp. JS61... 262 2e-68 UniRef50_C0GDS7 ROK family protein n=1 Tax=Dethiobacter alkaliph... 261 4e-68 UniRef50_A4AFQ9 Putative ROK-family transcriptional regulator n=... 260 5e-68 UniRef50_B5XVY7 ROK family protein n=6 Tax=Proteobacteria RepID=... 260 7e-68 UniRef50_C7QHP4 ROK family protein n=1 Tax=Catenulispora acidiph... 260 8e-68 UniRef50_A5N8K8 Transcriptional regulator n=31 Tax=Clostridium R... 260 8e-68 UniRef50_C6B6F2 ROK family protein n=8 Tax=Rhizobium RepID=C6B6F... 260 9e-68 UniRef50_B5YE80 Glucokinase n=2 Tax=Dictyoglomus RepID=B5YE80_DICT6 260 1e-67 UniRef50_C5C1Z1 ROK family protein n=2 Tax=Actinomycetales RepID... 259 1e-67 UniRef50_Q6A638 Transcriptional regulator, ROK family n=1 Tax=Pr... 259 2e-67 UniRef50_D1AGC1 ROK family protein n=1 Tax=Sebaldella termitidis... 258 2e-67 UniRef50_C6CR95 ROK family protein n=1 Tax=Paenibacillus sp. JDR... 258 2e-67 UniRef50_D2PYX6 ROK family protein n=1 Tax=Kribbella flavida DSM... 258 2e-67 UniRef50_D2PQN5 ROK family protein n=1 Tax=Kribbella flavida DSM... 258 2e-67 UniRef50_D2PPF8 ROK family protein n=2 Tax=Actinomycetales RepID... 258 3e-67 UniRef50_C7Q6P6 ROK family protein n=1 Tax=Catenulispora acidiph... 258 3e-67 UniRef50_C4ZGB0 Putative NAGC-like transcriptional regulator n=1... 258 3e-67 UniRef50_A6NTH3 Putative uncharacterized protein n=1 Tax=Bactero... 257 4e-67 UniRef50_B6R7J1 Xyl repressor, putative n=1 Tax=Pseudovibrio sp.... 257 4e-67 UniRef50_C9BHD6 Xylose operon repressor n=1 Tax=Enterococcus fae... 257 4e-67 UniRef50_B5YAB7 Xylose repressor n=1 Tax=Dictyoglomus thermophil... 257 5e-67 UniRef50_A3CKM1 ROK family protein, putative n=2 Tax=Firmicutes ... 257 5e-67 UniRef50_Q185Y3 Putative regulator of a specific sugar metabolis... 257 8e-67 UniRef50_A5N1R7 Predicted transcriptional regulator n=2 Tax=Clos... 256 9e-67 UniRef50_C9Y7Z7 Putative uncharacterized protein n=1 Tax=Curviba... 256 1e-66 UniRef50_D1ANX8 ROK family protein n=1 Tax=Sebaldella termitidis... 256 1e-66 UniRef50_A5IKW0 ROK family protein n=6 Tax=Thermotogaceae RepID=... 256 1e-66 UniRef50_C2FZL1 ROK family transcriptional repressor protein n=6... 256 1e-66 UniRef50_C8ZX67 Xylose operon repressor n=4 Tax=Enterococcus Rep... 256 1e-66 UniRef50_A9BJ26 ROK family protein n=1 Tax=Petrotoga mobilis SJ9... 255 2e-66 UniRef50_D2Q094 Glucokinase, ROK family n=2 Tax=Kribbella flavid... 255 2e-66 UniRef50_C8P1T2 Regulator n=1 Tax=Erysipelothrix rhusiopathiae A... 255 3e-66 UniRef50_C5C348 ROK family protein n=1 Tax=Beutenbergia cavernae... 254 3e-66 UniRef50_C3QC45 ROK family transcriptional repressor protein n=1... 254 4e-66 UniRef50_Q9Z557 Putative ROK family transcriptional regulator n=... 254 4e-66 UniRef50_Q1IJT5 Glucokinase n=1 Tax=Candidatus Koribacter versat... 254 4e-66 UniRef50_A5CYL2 Transcriptional regulator/sugar kinase n=4 Tax=C... 253 6e-66 UniRef50_C9NFC9 ROK family protein n=10 Tax=Streptomyces RepID=C... 253 7e-66 UniRef50_Q2RK90 Glucokinase n=1 Tax=Moorella thermoacetica ATCC ... 253 8e-66 UniRef50_A7VV97 Putative uncharacterized protein n=1 Tax=Clostri... 253 8e-66 UniRef50_A4BDK2 N-acetylglucosamine repressor n=1 Tax=Reinekea b... 253 1e-65 UniRef50_D1AWX4 ROK family protein n=1 Tax=Streptobacillus monil... 253 1e-65 UniRef50_B0K0J6 ROK family protein n=8 Tax=Thermoanaerobacter Re... 252 1e-65 UniRef50_A0P1G6 Probable transcriptional regulator protein n=1 T... 252 1e-65 UniRef50_B2GIX7 Putative NagC family transcriptional regulator n... 252 2e-65 UniRef50_A6WEF3 ROK family protein n=2 Tax=Actinomycetales RepID... 252 2e-65 UniRef50_UPI0001B57B53 transcriptional regulator n=1 Tax=Strepto... 252 2e-65 UniRef50_UPI000178996E ROK family protein n=1 Tax=Geobacillus sp... 252 2e-65 UniRef50_C5RVI1 Glucokinase, ROK family n=11 Tax=Thermoanaerobac... 251 3e-65 UniRef50_C6B4Z7 ROK family protein n=3 Tax=Rhizobium RepID=C6B4Z... 251 3e-65 UniRef50_C7QJQ5 ROK family protein n=1 Tax=Catenulispora acidiph... 250 5e-65 UniRef50_A9WL96 Transcriptional regulator/sugar kinase n=13 Tax=... 250 5e-65 UniRef50_B0PDL5 Putative uncharacterized protein n=1 Tax=Anaerot... 250 6e-65 UniRef50_D1W4V6 ROK family protein n=2 Tax=Prevotella RepID=D1W4... 250 6e-65 UniRef50_D2PPN2 ROK family protein n=1 Tax=Kribbella flavida DSM... 250 7e-65 UniRef50_Q11DN8 ROK domain containing protein n=3 Tax=Phyllobact... 250 8e-65 UniRef50_O82844 Xylose repressor n=2 Tax=Enterococcaceae RepID=O... 250 8e-65 UniRef50_D1BAZ9 Transcriptional regulator/sugar kinase n=2 Tax=M... 249 1e-64 UniRef50_D2BD51 Transcriptional repressor of the xylose operon n... 249 1e-64 UniRef50_A4XCV6 ROK family protein n=2 Tax=Salinispora RepID=A4X... 249 1e-64 UniRef50_C4RIZ1 ROK-family transcriptional regulator n=1 Tax=Mic... 249 1e-64 UniRef50_Q1Q3C7 Similar to glucokinase n=1 Tax=Candidatus Kuenen... 248 2e-64 UniRef50_C7IE75 ROK family protein n=1 Tax=Clostridium papyrosol... 248 2e-64 UniRef50_B8E378 ROK family protein n=1 Tax=Dictyoglomus turgidum... 248 2e-64 UniRef50_C0W4H3 ROK family protein n=1 Tax=Actinomyces urogenita... 248 3e-64 UniRef50_C0CHG9 Putative uncharacterized protein n=1 Tax=Blautia... 248 3e-64 UniRef50_C8SG46 ROK family protein n=1 Tax=Mesorhizobium opportu... 248 3e-64 UniRef50_A4WVU3 ROK family protein n=9 Tax=Rhodobacteraceae RepI... 247 4e-64 UniRef50_C8Q8E8 ROK family protein n=1 Tax=Pantoea sp. At-9b Rep... 247 4e-64 UniRef50_Q9KCZ4 Glucokinase n=101 Tax=Bacillales RepID=GLK_BACHD 246 9e-64 UniRef50_C8XGH9 ROK family protein n=1 Tax=Nakamurella multipart... 246 1e-63 UniRef50_D1CDD5 ROK family protein n=1 Tax=Thermobaculum terrenu... 245 2e-63 UniRef50_B4EVY3 Protein Mlc (Making large colonies protein) (ROK... 245 2e-63 UniRef50_C6J3G4 Transcriptional repressor n=1 Tax=Paenibacillus ... 245 2e-63 UniRef50_C6PDS2 ROK family protein n=1 Tax=Thermoanaerobacterium... 245 2e-63 UniRef50_C6WCX5 ROK family protein n=1 Tax=Actinosynnema mirum D... 245 2e-63 Sequences not found previously or not previously below threshold: UniRef50_Q5WKJ0 Transcriptional repressor of the xylose operon n... 310 4e-83 UniRef50_C5RGV2 ROK family protein n=2 Tax=Clostridium RepID=C5R... 289 2e-76 UniRef50_C1XPR1 Transcriptional regulator/sugar kinase n=14 Tax=... 273 5e-72 UniRef50_Q67KQ9 Transcriptional repressor n=1 Tax=Symbiobacteriu... 268 2e-70 UniRef50_B9K724 ROK family protein n=1 Tax=Thermotoga neapolitan... 268 2e-70 UniRef50_A6CIT4 Transcriptional repressor of the xylose operon n... 263 7e-69 UniRef50_A8S1Z3 Putative uncharacterized protein n=1 Tax=Clostri... 262 1e-68 UniRef50_C0ZJD3 Probable transcriptional regulator n=1 Tax=Brevi... 262 2e-68 UniRef50_C1XND9 Transcriptional regulator, MarR family n=1 Tax=M... 261 4e-68 UniRef50_C6WCK9 ROK family protein n=6 Tax=Actinomycetales RepID... 259 1e-67 UniRef50_D1NUM3 Transcriptional repressor in the Rok family prot... 257 6e-67 UniRef50_C6P958 ROK family protein n=2 Tax=Thermoanaerobacterale... 255 3e-66 UniRef50_B7GQ98 ROK family protein n=10 Tax=Bifidobacterium RepI... 253 9e-66 UniRef50_A3I7X3 Putative uncharacterized protein n=1 Tax=Bacillu... 247 4e-64 UniRef50_C0X1R1 Transcriptional regulator n=13 Tax=Enterococcus ... 247 6e-64 UniRef50_Q1J318 ROK domain protein n=2 Tax=Bacteria RepID=Q1J318... 246 9e-64 UniRef50_D0MF67 ROK family protein n=1 Tax=Rhodothermus marinus ... 246 1e-63 UniRef50_D2Q6V0 N-acetylglucosamine repressor n=2 Tax=Bifidobact... 246 1e-63 UniRef50_C9A2C4 Putative uncharacterized protein n=1 Tax=Enteroc... 246 1e-63 >UniRef50_P76586 Uncharacterized protein yphH n=68 Tax=Enterobacteriaceae RepID=YPHH_ECOLI Length = 397 Score = 488 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 397/397 (100%), Positives = 397/397 (100%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI Sbjct: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA Sbjct: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL Sbjct: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 GIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH Sbjct: 181 GIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS Sbjct: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR Sbjct: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI Sbjct: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 >UniRef50_A8VZR7 Methyltransferase type 11 n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VZR7_9BACI Length = 404 Score = 357 bits (917), Expect = 3e-97, Method: Composition-based stats. Identities = 91/396 (22%), Positives = 175/396 (44%), Gaps = 13/396 (3%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 + ++ N+ +++ ++ R+ +++ +++ A ++ P V+NI+ +L E V + Sbjct: 10 RLMKSLNRSLVINIIRRKGPISRTDISKQANLTPPTVTNIVNDLLKEGLVKEGRTGASKG 69 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANAC---LSPKGEFEYLQIDAPTPQALLSE 124 G I + + ++V I ++N L+ K E I A +L Sbjct: 70 GRRPVLLSINYNNHYVIGVDVGTGQIRVGLSNLNAELLNRKKETLPAGIKAGEFMTILYR 129 Query: 125 IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184 + + + D + + + +HG VD G+S P + + +K LE + I V Sbjct: 130 LVDDMITNSDVSRDKIVGIGIGMHGIVDEEKGISIYAPHFDF-GELPLKERLEARYEIPV 188 Query: 185 MVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV 243 V+ND A+AE W +++ + INV GIG+ ++N QI+RG + +G++GH IV Sbjct: 189 KVENDARCSAIAEMWFGDTRANPNLVFINVGDGIGAGVILNGQIHRGHHHIAGELGHMIV 248 Query: 244 NPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVST----QLDPEKLTTAQLIAAWQ 299 + +G C CG YGCL TVAS ++++A + + + + E + + A Sbjct: 249 DLNGRQCTCGSYGCLHTVASGIHIRERAIHEITLGRSTALREMRENKEDIDGEVIYEAAL 308 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 G+ + ++ +GL++ N +N LN +QI L G G + ++ Sbjct: 309 HGDEFAEELFAQAGRFLGLAVTNVINFLNPDQIVLGGGVMKAGAFVMKPLVETVNRRALT 368 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 D + T+I L +LG L + Sbjct: 369 DD----ARKTEITVSSLGSHSALLGAVSLILHDVFE 400 >UniRef50_A7VQ47 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQ47_9CLOT Length = 401 Score = 354 bits (910), Expect = 2e-96, Method: Composition-based stats. Identities = 90/401 (22%), Positives = 165/401 (41%), Gaps = 16/401 (3%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 ++ + HNK ++ + ++ +ARL +SIP V I E + + + Sbjct: 4 VDKSIVGIHNKEAVINTIRDNSPIFRAEIARLTGLSIPTVMKITDEFKESGLIYESGKRT 63 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 G P+ + + ++V T + + + D T +L + Sbjct: 64 SEVGKPPKLLSFVPDAKYIIGVDVGTTHVGAVLMDLSAKILLREWAPTHDGHTFPQVLEQ 123 Query: 125 IEKCWHRHRKLWPD---HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 +C + + + + + + G + TG P W + L+E+ Sbjct: 124 TIQCIQKILDASSEYAGKILGIGVGVPGLISVETGKIILSPAIGWHEGNFLA-PLKERFR 182 Query: 182 IRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + V+VDN +A+ E W + +F I + YGIGSS VI +QIY GS SG+ GH Sbjct: 183 LPVVVDNVVRAMAMGELWFGAGRGLENFFCIGLGYGIGSSIVIGKQIYSGSTGTSGEFGH 242 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLD-----PEKLTTAQLI 295 ++ G +CDCG YGCLE +AS +A+ KQAR + + S D + + Sbjct: 243 MTIDKSGPLCDCGCYGCLEAIASANAISKQARFAISNGANSMMFDIIHGNLNDINAKVVF 302 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF 355 A ++G+ + V++ +G+++ N +N+L+ I L G G+ LN ++ + Sbjct: 303 DAAKAGDSLANTIVNQVTVYLGIAISNVINLLDPQLIILGGGVSQAGDFLLNPLLDEVSR 362 Query: 356 NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 + VK I L +G ++ + Sbjct: 363 HVL------PVKEPHIVISSLGEDAVAIGAATFLLKEYVES 397 >UniRef50_B0KBZ3 ROK family protein n=6 Tax=Thermoanaerobacter RepID=B0KBZ3_THEP3 Length = 408 Score = 352 bits (903), Expect = 1e-95, Method: Composition-based stats. Identities = 90/399 (22%), Positives = 169/399 (42%), Gaps = 9/399 (2%) Query: 1 MRACI-NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVN 59 M+ I N + I+ N+ +++ + +++ +++ + + V+NI++ELE++ V Sbjct: 1 MKLRIGNKELIKDINRSLVINEIRMNGPISRTDISKNLNLGLSTVTNIVEELENQNLVHE 60 Query: 60 IDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ 119 + + T G + + + + ++ + N + Sbjct: 61 VGEADSTGGRKPILLEFNYNYGYIIGIKIEENNLIFALTNLKSEIIEKRVVPFKKGTNSN 120 Query: 120 ALLSEIEKCWHRHRKLWP--DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 +L+ + + + P + + + +A+ G VD G W+ VE+ +LE Sbjct: 121 TVLNMVVENIEKLITKIPYNKNLMGIGVAVSGLVDQQKGKLIYSGMLNWSN-VEIGNILE 179 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 K + V +DND LAE W + +E +F V+ GIGS VIN+++Y G G+G Sbjct: 180 NKFNVPVYIDNDVNAYTLAELWYGHGRELNNFIVVTYGSGIGSGIVINKKLYTGDFGGAG 239 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 +IGH ++ +G C+CG+ GCLE AS + R +K S E L+ ++ Sbjct: 240 EIGHMVLVAEGRKCECGQRGCLEAYASEDFIVDYIRDNIKMYSESKIDLTEDLSIEKVYE 299 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 + G+ + SA +G L + +N+LN + I L G + L +I N Sbjct: 300 YAKEGDMLAIDVLRLSAKYLGYGLLSVINLLNPSTIILAGEGMIAKDIIL-PVINDIVKN 358 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 F + K QI +L V+G L + Sbjct: 359 NFFKMHE---KKVQIKVSELGDEGWVIGASTLAISKLFE 394 >UniRef50_Q9KDW7 Transcriptional repressor of the xylose operon n=2 Tax=Bacillus RepID=Q9KDW7_BACHD Length = 407 Score = 352 bits (903), Expect = 1e-95, Method: Composition-based stats. Identities = 95/406 (23%), Positives = 180/406 (44%), Gaps = 14/406 (3%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M + Q ++ N+ +IL + +++ +A+ +++ P V+NI+ EL EK V Sbjct: 1 MPVAGSFQLMKSMNRSLILNTIRLDGPISRADIAKKTKLTPPTVTNIVAELIEEKLVRES 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 G I + + + L+V + + + +G+ T + Sbjct: 61 KMGESRGGRKPILLTIDAKNSFVIGLDVGGYRVRAVLTDLNGEVEGQTTVELSSDLTEET 120 Query: 121 LLSEIEKC---WHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 L+ ++ K K+ D I + + +HG VD +G++ P T +++K E Sbjct: 121 LIDQLIKITVTLFEQCKMQKDKVIGIGIGMHGIVDHQSGMAVFAPNFQLTN-IDLKTPFE 179 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSG 236 + V V+ND LAL E W N Q D +NV GIG+ V+N++++ G +G Sbjct: 180 STFDVPVFVENDARALALGETWFGNGQGIDHVICVNVGVGIGAGIVLNKRLFHGVHGIAG 239 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQL-----DPEKLTT 291 +IGHT V+ G C CG YGCL+TVA + LK++A + S + L D ++++ Sbjct: 240 EIGHTTVDIHGKKCTCGNYGCLQTVAGGNMLKERAIHDIASGRKTMLLEKVEGDMDRISG 299 Query: 292 AQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIR 351 + +G+P ++ + +G+ + N +N +N ++I + G G+ L + + Sbjct: 300 EIIHQCALAGDPLSIEILEEAGKYLGIGITNIINFINPDRIIVGGGVSKAGDFVLEPLRK 359 Query: 352 QTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 +R + T++ +L +G L +E I Sbjct: 360 MVK----ERALTAKARETEVVTAELGEWGTAIGAVTLVLEDLFAPI 401 >UniRef50_Q67NW4 Transcriptional repressor n=1 Tax=Symbiobacterium thermophilum RepID=Q67NW4_SYMTH Length = 403 Score = 347 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 87/402 (21%), Positives = 169/402 (42%), Gaps = 17/402 (4%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 + + IR NK +L L+ +++ LA ++ P VS ++ EL E V I Sbjct: 3 VGPELIRAINKQRVLRLVRSAGAMSRADLAERTGLTRPTVSAVVAELLEEGWVEEIGTGE 62 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 + G P W + + + +A+ + F+ ++++ P + + Sbjct: 63 SSGGRPPILLRFNPRARWVIGAELGAGHVRAVLADLAGNVFHRFK-QRVESRDPLIEVDQ 121 Query: 125 IEKCWHRHRKLWPDH-----TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 +E+ P + + + I G +DP GV + P + V +L+E+ Sbjct: 122 LERAVRYLLDQTPRYGPPTPVAGVGIGITGVIDPEEGVWRYSPHYQVRD-LPVAPMLQER 180 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 L + V ++ND +A E+ +Q + I V G+G+ +I+ ++Y G+ G+G+I Sbjct: 181 LSLPVWIENDARAMAWGERSFGAAQGVDNLAFIRVGVGLGAGIIIDGRLYGGAHQGAGEI 240 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVST-----QLDPEKLTTAQ 293 GH +V G+ C CG GCLETV S A+ ++A + + DP K+ Sbjct: 241 GHIMVKERGLRCRCGSDGCLETVGSAIAIARRAVQRMAQGEETLIRELCGGDPSKVIATT 300 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT 353 +I A +G+ + + +G+ + +N+LN + + G + G+ + + + Sbjct: 301 VIEAADAGDRVAQEILSEAGRFLGIGIGAMINLLNPAMVIIGGGTSRAGDYLIEPLRQ-- 358 Query: 354 GFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 +R + +I +L LG L +E R Sbjct: 359 --AALERTLPALRERVKIVRTELGEDAGPLGGAALVIEELFR 398 >UniRef50_D2LQJ9 ROK family protein n=2 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LQJ9_BACS4 Length = 419 Score = 344 bits (884), Expect = 3e-93, Method: Composition-based stats. Identities = 94/395 (23%), Positives = 177/395 (44%), Gaps = 14/395 (3%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVN-IDDESQT 66 + ++ NK IL ++ + +++ +A++ +++ P V +I+ EL K V+ + Sbjct: 11 EGMKSLNKTAILNIIRLKGPISRAEIAKMTKLTPPTVGSIVGELIDSKMVIEETGESKSH 70 Query: 67 RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIE 126 G I + + + I +A E PT + ++ Sbjct: 71 GGRKPIMLTINASSYYVIGIYGAREIIHTVIATLDGKISYSNEEKLSTPPTKDEYIDLLK 130 Query: 127 KCWHR---HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIR 183 + +++ + + + + +HG VDP G+S P + +K LE I Sbjct: 131 NGVEKVLQQKRIKQNKVLGIGVGMHGLVDPQKGISIFSPHLHIEN-IPIKQELESAFDIP 189 Query: 184 VMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 V+VDND LALAE W ++ +F ++V GIGS ++N +IY G + +G+IGHT+ Sbjct: 190 VLVDNDVRTLALAESWYGEGKDISNFVCLSVGLGIGSGIMLNGEIYTGQYHSAGEIGHTV 249 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLD-----PEKLTTAQLIAA 297 V+ +G C CG YGCLE AS A+ + + L+ + D +LT + A Sbjct: 250 VDINGPRCQCGNYGCLEAYASELAIISRVKKGLRLGRSTIINDWIKETDSQLTIEMVFDA 309 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNP 357 + G+ ++ ++ + +G+++ N +NIL +++ L GR G N L + +++ Sbjct: 310 AEKGDAFVLEVLEETGRFLGIAVANLINILTPSKVILEGRIFEAGGNTLLSPLKEIIKKS 369 Query: 358 FDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEA 392 R V I L + V+G L ++ Sbjct: 370 SLRSYSDDVS---IVTSDLGKKGMVIGAFTLVLKE 401 >UniRef50_B8D168 ROK family protein n=12 Tax=Clostridia RepID=B8D168_HALOH Length = 396 Score = 343 bits (881), Expect = 6e-93, Method: Composition-based stats. Identities = 90/390 (23%), Positives = 174/390 (44%), Gaps = 12/390 (3%) Query: 11 RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHS 70 + N+ +IL ++ R +++ +++ ++ P V+N++ +L E V+ + G Sbjct: 13 KGMNEKLILNIIRRDGPISRADISKKTNLTPPTVTNVINKLVEENLVLEDIMGESSGGRP 72 Query: 71 SGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWH 130 + PE + +V+ + + +A L + Y I+ Q +L + + Sbjct: 73 PQLVRLNPEAFNIVVTHVSSNKLTGYLTDAYLKVSKKVVY-DIERLEKQKILDLMFEVID 131 Query: 131 RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDC 190 K L + +HG V GVS P W V +K L++E+ V V+ND Sbjct: 132 ELIKSASQEVPALGVVVHGPVKAREGVSVFAPNIGWRN-VPIKKLVQERFKKPVCVENDV 190 Query: 191 VMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVV 249 + L E + + + + + + YGIGS+ + + +I+RG +G+ GHT V+ G Sbjct: 191 RAMGLGEFYYGSGKGVDNLVFLKIGYGIGSAIIFDGKIFRGISDSAGEFGHTTVDIGGPR 250 Query: 250 CDCGRYGCLETVASLSALKKQARVWLKSQPVST-----QLDPEKLTTAQLIAAWQSGEPW 304 C+CG YGCLE ++S +A+ K LK+ +S + EK+T + A G+ Sbjct: 251 CNCGNYGCLEALSSENAIVKAVVKDLKAGRMSLVRELCDGNLEKVTPDHVYRAADRGDEL 310 Query: 305 ITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGP 364 S + +A +G+ + N +N +N I + G + II ++ +R Sbjct: 311 SLSVLQEAARYLGIGIANIINSINPKVIVIGGGIIKA-RLHIEEIINKSVE---ERALTN 366 Query: 365 SVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + ++ I F +L + G G + ++ L Sbjct: 367 AYQSCDIVFSELGDIGTLKGAGNIVMDEIL 396 >UniRef50_B8CZW2 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZW2_HALOH Length = 383 Score = 339 bits (870), Expect = 1e-91, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 164/388 (42%), Gaps = 14/388 (3%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGH 69 ++ N+ ILEL+ + +++ +A + ++ VSNI+++L V G Sbjct: 1 MKKINQQTILELINNKGPISRAEIAEITGLTPATVSNIVKDLLKMDLVRETRQGESRGGR 60 Query: 70 SSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCW 129 + PEG + + L I+ + N + Q+D+ P+ L + Sbjct: 61 KPILLEVNPEGAYVIGLEWGIGEIKAVLLNLNKKVIKTIK-KQVDSFKPEWFLKTTVTIF 119 Query: 130 HRHRK--LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVD 187 PD L + IHG VDP GVS P W +++ LL+++L I +M+D Sbjct: 120 EEVTGYVENPDKVFGLGIGIHGLVDPDEGVSLYAPHFGWEN-IKIGKLLKQELQIPIMLD 178 Query: 188 NDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDG 247 ND M+ALAEKW+ +F IN GIGS+ VI ++ G +G+G+ GH + DG Sbjct: 179 NDVRMMALAEKWEGR---DNFIFINTGPGIGSAIVIKGELLYGRDFGAGEFGHMTIVEDG 235 Query: 248 VVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITS 307 +C CG GC+E + S++ L ++ L + E LI + + S Sbjct: 236 ALCSCGNRGCIEALVSVNNLVREYNDSLPEHISFHDIKRE---WNLLIDLAREEKSRAYS 292 Query: 308 WVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVK 367 ++++ +G + N +N+LN + + G + I Q + + Sbjct: 293 IIEKAGVYLGKGIGNVVNLLNPEAVVIGGDFLLARDLIFPVIKEQV----LETALKVPSR 348 Query: 368 ATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 +I +G G ++ + Sbjct: 349 DLEITGTAFGEKVGAIGAGTRVLQEIFK 376 >UniRef50_Q65CW6 Putative uncharacterized protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65CW6_BACLD Length = 390 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 89/401 (22%), Positives = 174/401 (43%), Gaps = 17/401 (4%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ Q ++ NK +IL + + +++ +A+ +I+ P VS+I++EL + V Sbjct: 1 MQRGT-FQLMKSVNKSIILNKIRTSEPISRAEIAKETKITPPTVSSIVKELIGQGLVKES 59 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 + G I + + ++ P ++EC + + L T + Sbjct: 60 TLGRSSGGRKPTMLHINTGAYYVIGIDAGPETVECVLTDLAGGILQRTSSLLKKPLTNER 119 Query: 121 LLSEIEKCWHRHRK---LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 + +++ + + + I + +A+HG VD TG+S+ P T + +K +LE Sbjct: 120 FMEVLKESVYAILGRADVEQEKIIGIGIAMHGVVDAETGMSRIAPILNLTN-IPIKDVLE 178 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 ++ + V V+ND +AL E W + +N+ G+G+ VIN ++Y G+ +G Sbjct: 179 QEFNLTVRVENDARAMALGESWFGGRDDAGSMAAVNIGRGVGAGIVINGKLYHGAEGIAG 238 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 ++GH I++ +G C+CG GCL+T+ S A+ ++ + LK S LT L Sbjct: 239 ELGHMIIDINGEKCECGNRGCLQTIVSGKAIAERGKKRLKESTDS-------LTAKDLFE 291 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 ++G + IG+ L NF++++N +I L G G L I Sbjct: 292 MAENGCQTCIELFQETGVIIGIGLTNFIHLVNPGKIVLGGGVMKGGRFILPAIRETIQ-- 349 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 + + T++ +L + G L + + Sbjct: 350 --QKALTAEARQTEVTITKLGDEATLYGAVSLLLAELFDPV 388 >UniRef50_P94490 Xylose repressor n=3 Tax=Bacillus RepID=XYLR1_BACSU Length = 384 Score = 337 bits (865), Expect = 4e-91, Method: Composition-based stats. Identities = 73/396 (18%), Positives = 158/396 (39%), Gaps = 22/396 (5%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 + ++ N+ ++L+ + + +++ L+ + ++ VS+ + L E V I Sbjct: 5 DQTFVKKVNQKLLLKEILKNSPISRAKLSEMTGLNKSTVSSQVNTLMKESMVFEIGQGQS 64 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEI 125 + G + + +++ ++V I + + + + +Y +++ +P+ + Sbjct: 65 SGGRRPVMLVFNKKAGYSVGIDVGVDYINGILTDLEGTIVLD-QYRHLESNSPEITKDIL 123 Query: 126 EKCWHRHRKLWPDH---TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 H P I + + + G +D + P + W +++K ++EK + Sbjct: 124 IDMIHHFITQMPQSPYGLIGIGICVPGLIDKDQKIV-FTPNSNWRD-IDLKSSIQEKYNV 181 Query: 183 RVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V ++N+ A EK ++ D +++ GIG +IN +YRG SG++GH Sbjct: 182 PVFIENEANAGAYGEKVFGAAKNHDNIIYVSISTGIGIGVIINNHLYRGVSGFSGEMGHM 241 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 ++ +G C CG GC E AS AL K S Q +KL+ +I Sbjct: 242 TIDFNGPKCSCGNRGCWELYASEKALLK-----------SLQTKEKKLSYQDIINLAHLN 290 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 + + + +G+ L N LN N + L LN++ + + + Sbjct: 291 DIGTLNALQNFGFYLGIGLTNILNTFNPQAVILRNSIIESHPMVLNSMRSEVSSRVYSQL 350 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 ++ L + LG+ + ++ L I Sbjct: 351 GNSY----ELLPSSLGQNAPALGMSSIVIDHFLDMI 382 >UniRef50_B8CZI2 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZI2_HALOH Length = 391 Score = 334 bits (858), Expect = 3e-90, Method: Composition-based stats. Identities = 87/394 (22%), Positives = 171/394 (43%), Gaps = 19/394 (4%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N+ I++ N+ I +L++++ + LA S +SN ++ L + V+ + Sbjct: 7 NSTFIKNLNQKRIFKLIHKEGPITRKELADNTDYSAGTISNHVKALIDQGFVIETEKGYS 66 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYL----QIDAPTPQAL 121 + G + P+ + + + V T ++ + N + + + T + Sbjct: 67 SGGRKPVYLTVNPDKGYIISVEVEVTRVKIVLFNLKIKVVAKTVFPINGPAQAKETISQI 126 Query: 122 LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 SEIEK R++ PD + + +A+ G +D G+ + P W+ V + E+K G Sbjct: 127 FSEIEKILSE-REIKPDKILGIGVAVPGLIDKEEGLLEFAPNLGWS-KVPIVKYFEDKYG 184 Query: 182 IRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 + V+++N+ A+ EK +D ++++ GIG + N ++YRG+ +G+ GH Sbjct: 185 VPVVLENEANAAAVGEKEFVYPDIKDMVYVSINEGIGCGLIFNGRLYRGAGGNAGEFGHI 244 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 I++ DG +C CG GC ET+AS + ++K+ + E + ++ G Sbjct: 245 IIDSDGPLCHCGNSGCWETLASENHIQKEYQELTGE---------ENVEKNEIYRKAIEG 295 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 E S V ++A+ IGL L N +N L+ I L G ++T+ ++ Sbjct: 296 EDRALSVVKQAAHNIGLGLANIVNSLSPRLIVLGGGIIEADTLIIDTVQSILK----EKC 351 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 S I F +L + G+ + Sbjct: 352 LLLSYDKVDIEFTRLKDLACLYGLASYVFNKSID 385 >UniRef50_C6IY97 ROK family protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IY97_9BACL Length = 399 Score = 334 bits (856), Expect = 5e-90, Method: Composition-based stats. Identities = 80/400 (20%), Positives = 172/400 (43%), Gaps = 20/400 (5%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ + Q I+ NK ++L+ + +++ +++ ++ ++ VS+++ EL V I Sbjct: 1 MKITGDQQLIKKMNKTIVLDTIRQRQPLSRADISAAIGLNKATVSSLVSELIDSHLVTEI 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 + G L + + +++ + + + E + + + +P+ Sbjct: 61 GPGESSGGRKPTLLLFNRSAGYAIGIDIRVNDLLAVLVDLEGHVLQE-KLVPLSDFSPEH 119 Query: 121 LLSEIEKCWHRHRKLWPDH---TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 +L +I + + ++ P+ + + + + G VD + + P W VE+ L Sbjct: 120 VLEQIRQTIRQFKEQLPESPYGIVGIGIGVPGLVDDKS-RVISAPNLDW-NKVELYEPLA 177 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 + G + +DN+ A+ EK +E ++ +++ GIGS ++ ++YRG+ SG Sbjct: 178 SEFGANLHIDNEANAGAIGEKLFGAGREAQNLIYLSIGIGIGSGIIVGGELYRGTSNFSG 237 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 ++GH + +G +C CG GC ET+AS AL +A + + ++I Sbjct: 238 EVGHMTIAENGPLCRCGNRGCWETLASEKALLDRA---------AKLWGDKHPDLEEMIQ 288 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 SG+ ++ +G+ L N +NILN I + R G+ + ++R Sbjct: 289 LAHSGDSRAIELLNEIGAQLGVGLANLVNILNPELIVIGNRLSLAGDLIQDAMLRTIE-- 346 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 +R K + + F L LG + + A L + Sbjct: 347 --NRSLSYHRKKSGVAFANLGIRSTALGAASMPITAFLSE 384 >UniRef50_A1HM15 ROK family protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HM15_9FIRM Length = 412 Score = 332 bits (851), Expect = 2e-89, Method: Composition-based stats. Identities = 91/401 (22%), Positives = 166/401 (41%), Gaps = 16/401 (3%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 N++ ++ N+ +L L+ + LA++ ++ PA++ I++EL V Sbjct: 5 GANSKYVKKRNRITVLNLIKEHGPIGRQELAQITGLTPPAITGIIRELLELGLVHEDGYG 64 Query: 64 SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLS 123 G + + + + VT VA+ P Y +D P A L+ Sbjct: 65 ESRGGRRPVKLTFNSKAGYVIGVEVTRGETTVGVADLMNDPTDIARY-PLDMSEPAAGLA 123 Query: 124 EIEKCWHR---HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQA-PWTTPVEVKYLLEEK 179 + + R + + +A G V TG Q P ++ LE+ Sbjct: 124 SLAELLRRIMNDEGKQGRSFVGVGIAFPGLVQAKTGTVQRSVNLGPAWRSYPLQEKLEDV 183 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 LG+ V ++N+ LAE+W RD +N+ GI + +++++I +G +G+I Sbjct: 184 LGLPVFIENNSNACVLAERWFGGGVCCRDLVYVNLGEGISAGVILDDRIVQGFQGYAGEI 243 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPE-----KLTTAQ 293 GH +++ G C+CG +GCLE + S+ AL KQAR L L + A Sbjct: 244 GHIVIDESGPQCNCGNHGCLEALCSVPALIKQARRDLPGLADGDPLKARWQSSGDIELAD 303 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT 353 L+A Q G + + + R+ + IG ++ +N+ N ++L G+ + + Sbjct: 304 LLAVAQPG-TYANALLSRAVHWIGRAVAAVINLYNPEAVFLGGQLAGAMARFEPILRDAV 362 Query: 354 GFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + F AT+I F L V+G L ++ L Sbjct: 363 AAHAFPE----IASATRIAFSALGEYPGVIGACALALKGLL 399 >UniRef50_Q2RLD7 ROK n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLD7_MOOTA Length = 410 Score = 330 bits (847), Expect = 5e-89, Method: Composition-based stats. Identities = 83/400 (20%), Positives = 171/400 (42%), Gaps = 15/400 (3%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N Q ++ N+ IL ++ + ++ LA+L ++ A++ I+++L + V+ Sbjct: 7 NLQLVKKLNRISILNIIRKHNTISRQQLAKLTGLTPAAITGIVRDLVASGYVIEKGLGKS 66 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEI 125 G P+ + L +T S + N P +Y ID PQ LS + Sbjct: 67 NGGRRPVKLQFNPDSGYVLGAEITRNSTTLGMVNLDAKPLILKQY-NIDMTDPQQGLSRL 125 Query: 126 EKCWHR---HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAP-WTTPVEVKYLLEEKLG 181 + + + + + +A G VD T V + P + ++ L+E G Sbjct: 126 ADEVTKMIIESGIESKNILGMGVAYPGLVDISTRVVKRSPNLGKKWRDIPIENWLQEMTG 185 Query: 182 IRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 I++ V+N+ A+AE +E ++ IN+ GI + ++N + G +G+IGH Sbjct: 186 IKIFVENNSNAAAMAEYCFGRGKETKNMAYINLGEGISAGIILNGMLAYGFRGYTGEIGH 245 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWL-----KSQPVSTQLDPEKLTTAQLI 295 +++ DG +C+CG GCLE++ ++ AL ++A L K + L+ ++ ++ Sbjct: 246 LVIDEDGPLCNCGNNGCLESLCAVPALVRKANNELSLYNQKDPLKAIWLEKGEVKIEDIM 305 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF 355 A + + + ++ IG ++ +N+ N I++ G G + L+ +I Sbjct: 306 ANANNVGSYAQKLIRQAGWYIGKAIAAIINVFNPEAIFIGGILAEAGNSLLDPLIESVQK 365 Query: 356 NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + F V+ +I + + G + + A Sbjct: 366 HAFPE----LVREVRIELSSMRKDTGFYGACAIAIRALFE 401 >UniRef50_UPI000178870E ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178870E Length = 413 Score = 329 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 93/406 (22%), Positives = 175/406 (43%), Gaps = 17/406 (4%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 NN+ +++ N+ I+ LL K+ +A ++ AV+N+ EL ++ + Sbjct: 5 VGKNNRHVKNLNRIGIIALLRDYGSLTKAEIAAKMNLTFTAVNNLTDELMKDRLIAEAGF 64 Query: 63 -ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANA----CLSPKGEFEYLQIDAPT 117 + +RG + +T+ ++++ +S+ V N + FE Sbjct: 65 YDESSRGRKPKLLSLNSGDIYTVGVHISASSVRAAVINLQGKAMMDKYSPFEDNANRGSV 124 Query: 118 PQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 ++S I+ I + + G +DPV G + P P V +K L+E Sbjct: 125 VNVIISTIQAVLDESG--LKSRIIGIGVGAPGPLDPVQGKILSPPNLPGLHQVRLKGLIE 182 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSG 236 E + ++ D ++AL E W N + + ++ D GIGS + N++IY+G +G+G Sbjct: 183 ENTELPTQIEKDANVMALGELWYGNGRHFNHLVYVDADIGIGSGLIFNQKIYQGCPFGAG 242 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVST-----QLDPEKLTT 291 +IGH ++ DG C+CG GCLE +AS A+ ++ L+ S+ + L Sbjct: 243 EIGHCTIDIDGPRCNCGNTGCLEAIASGMAIVRRVGEELRRGAGSSLQSSFDGNDHGLDI 302 Query: 292 AQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIR 351 +I A G+P + ++ SA +G+SL N +N+L I + G ++ + Sbjct: 303 TDVITAGVDGDPLAANMLNESARYVGISLANVINLLTPETIIIGGVLANRYPDYFTYVRE 362 Query: 352 QTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 ++R + +L V+G G + E L +I Sbjct: 363 ----TSYNRSLSSFHDKIMLQPSELGEYAGVIGAGTIVFEKYLNEI 404 >UniRef50_B8E382 ROK family protein n=2 Tax=Dictyoglomus RepID=B8E382_DICTD Length = 400 Score = 328 bits (841), Expect = 2e-88, Method: Composition-based stats. Identities = 73/397 (18%), Positives = 160/397 (40%), Gaps = 13/397 (3%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 +N + +R N ++L+ + R ++ ++++ ++S AVS+I++ L + V + Sbjct: 4 VNIKSMRMTNVSLVLDTIRRMGPISRYDISKITKLSPSAVSSIVENLINVGIVKETPAKV 63 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 G + G + + + + I + + + ++ +L Sbjct: 64 TKVGRRPIELTLNETGYYPIGIEIEKDKITGILMALSGKILKS-KVINLNTTDVNEVLGS 122 Query: 125 IEKCWHRH-RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIR 183 + + + + I + +A+ G ++ GV P W +YL + Sbjct: 123 VVNVYRSLIEDVNKEEIIGVGVAVPGTINRKEGVCIFSPNLGWRNINIKEYLGQYIKDYP 182 Query: 184 VMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 + +++ + E W +D + V G+ + FV++ ++YRG +G+ GHT+ Sbjct: 183 LFIEHIIKAVTYGEMWYGAGIGKDNIICVRVGSGVSAGFVLDGKLYRGPNDRAGEFGHTV 242 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQP---VSTQLDPEKLTTAQLIAAWQ 299 + +G C CG YGCLET S L ++ ++ V+ + + ++I A + Sbjct: 243 IERNGKKCKCGSYGCLETYVSTQVLYEKVFEGIQKNAYTKVNIENKTKDEILDEIIEAGK 302 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 SG+ +I + + +G+ + N +N+ N I + G GE L + R + F Sbjct: 303 SGDRFILNIFEEMGTYLGIGIANLINLFNPEIIIIAGGLSKAGELLLEPVRRIVNLHAFP 362 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 +I +L +G +E L + Sbjct: 363 PIP-------EIMVTKLGALTGPIGAASEVIEETLLK 392 >UniRef50_Q1CY52 Transcriptional regulator, ROK family n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CY52_MYXXD Length = 408 Score = 325 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 87/398 (21%), Positives = 165/398 (41%), Gaps = 14/398 (3%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 ++ +R N ++L +++R+++ +++ +AR ++S VS I+ +LE V +I Sbjct: 8 TTVDAAGMRAQNSSLLLNMIWRERQISRAEIARRTELSPSTVSAIVADLERSGLVRSIGA 67 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 G + + + + T + + + + P+ L Sbjct: 68 GVSRGGRRPTLIGFCDDAFSLIGVEMGATHVTAALTDLRGRVRAYRHASHAVREDPKGTL 127 Query: 123 SEIEKCWHR---HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 ++ + ++ + +A+ V P + P +V+ L Sbjct: 128 QKVRELVQEVLDAERVPRRSVAGMGIAVPSPVHPSAPGKLSPLLVPAWRDYDVQESLRSA 187 Query: 180 LGIRVMVDNDCVMLALAE-KWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 G+ V VDND + AL+E W D I + GIGS +I+ +YRG+ +G+I Sbjct: 188 FGLPVFVDNDANLGALSECYWGAGVNGEDLAYIKLATGIGSGHIIHGDVYRGAGGTAGEI 247 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 H V+ G C CG GCL T+ +AL ++AR + + D LT +L+ Sbjct: 248 SHMAVDSSGPQCVCGLRGCLVTLIGSAALLERARELMGRK------DKRALTVRELVEGA 301 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 ++GEP +D + +G+++ LN+LN + L G + G+ L+ + Sbjct: 302 RAGEPAARQVIDGLGHYLGIAVAGLLNLLNPAIVVLGGEISSVGDLLLDPLRASVRK--- 358 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 R S+ T+I L +G L ++A LR Sbjct: 359 -RALSTSMAETRIVTSALGDRAIAVGAATLVLQAALRD 395 >UniRef50_C0ZA78 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZA78_BREBN Length = 401 Score = 322 bits (826), Expect = 1e-86, Method: Composition-based stats. Identities = 87/402 (21%), Positives = 162/402 (40%), Gaps = 13/402 (3%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 MR + + I+ N+ +IL+ + + ++S +A+ IS V++ + EL + V Sbjct: 1 MRRTGDLKLIQELNRFIILDTIRQFGPISRSDIAKKQGISPTTVTSAVNELIRDGMVAED 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 G P+G + + +++T T+I N + K + Y Sbjct: 61 GTGESKGGRKPIMVRFCPDGKFLIGVSITNTAITIAEMNLEAATKQKKIYPVKAGLVSDL 120 Query: 121 LLSEIEKCWHRHRKLWPD--HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 ++ + + D + +++ G VD +GV + + V +K + EE Sbjct: 121 IIQYVLDSIGDFLQSVDDVSRCLGISIIAPGIVDAASGVIRFNSKLRLHD-VPLKDMAEE 179 Query: 179 KLGIRVMVDNDCVMLALAEK-WQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 + G+ +DND +ALAEK + + + V G+GS V+N I+RGS G+G+ Sbjct: 180 RFGLNTWLDNDANAIALAEKNFGGGLNADNLLFVTVGEGVGSGLVVNGSIFRGSRGGAGE 239 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEK-----LTTA 292 GHT V+ G+ CDCG GCLE + A+ + + +D +T Sbjct: 240 FGHTTVDRSGMRCDCGNVGCLENYVAWPAIYSGILSAVTRGKETLVMDLADGDMTRITFD 299 Query: 293 QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQ 352 A G+ VD A+ + + + N +N+ N + I L G + I +Q Sbjct: 300 VFRQALHQGDQVCQDIVDEIASYMSIGIVNLVNLFNPSLIILGGEMIRDNQVLFERIQKQ 359 Query: 353 TGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + G V+ + L +V + ++ Sbjct: 360 V----MAQAMGTMVEGLEFRPTVLGADFEVKAAAAVLLQDVF 397 >UniRef50_C6D1T9 ROK family protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D1T9_PAESJ Length = 387 Score = 321 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 81/401 (20%), Positives = 164/401 (40%), Gaps = 23/401 (5%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 + + I+ N ++LE + +Q +++ ++ L ++ VSN++Q+L VV I Sbjct: 3 VTTTGDLTLIKKINTSIVLEAVLKQAPLSRAQISELTGLNKATVSNLVQDLIDSDLVVEI 62 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 + G L + + + +++ I +A+ + E + + Sbjct: 63 GPGESSGGRKPVMLLFNGKAGYAVGIDLGVNYIRGVLADLEGNVIAE-RKRSLKKHQLEF 121 Query: 121 LLSEIEKCWHRHRK---LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 L E+ +C P + + + + G VD G P W VE++ +LE Sbjct: 122 TLKELVQCIEELIGKAPASPYGIVGIGIGVPGIVD-DQGSILFAPNLEWRH-VELQQMLE 179 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 E+ + V +DN+ A E+ + ++V GIG+ ++N+++Y+G+ SG Sbjct: 180 EQFQLPVTIDNEANAGAQGEQKYGIGRGIAHQIYVSVGIGIGTGIILNKELYKGATGFSG 239 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 ++GH + +G C CG GC E AS +AL +QA + L+ Sbjct: 240 ELGHLSIEYNGKPCRCGNEGCWELYASENALLEQAAPLGFD------------SLEDLLD 287 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 A ++G + + + +G + N +N+ N + + + R + WL ++ + Sbjct: 288 AAEAGNEEVRALFYKIGEYMGAGISNIVNVFNPDVVIIGNRMSRA-KTWLEEAVQSSVTR 346 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 R + +I F +L V G Y + +I Sbjct: 347 ---RTLPYHRERLRILFAELQDQSAVRGAAYYAISKFFTKI 384 >UniRef50_Q1Z3R9 Putative uncharacterized protein n=1 Tax=Photobacterium profundum 3TCK RepID=Q1Z3R9_PHOPR Length = 404 Score = 321 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 162/397 (40%), Positives = 237/397 (59%), Gaps = 4/397 (1%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 + +NNQQ+R +N +I+ LLY+ K +KS LA+ Q+SIPA+S I+ L + RV N Sbjct: 10 IHKGLNNQQVRQYNSRMIMALLYKNKGMSKSQLAQTTQLSIPAISKIIGALIEQGRVENT 69 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 + +G+ G + ++ T+CLNV+PT I+ + + ++ +F I TP Sbjct: 70 TTDHVRKGNFKGLYNVSRNRPDTICLNVSPTCIQAVMVDNEINSCSDFINQAIAPTTPNE 129 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 L+ I R++ L++A+HGQVD + G S MPQAPWT +E+KY+LE++L Sbjct: 130 LIDAIVSVIVACRQVNRATPYRLSIAVHGQVDTLVGSSMHMPQAPWTENIELKYILEQRL 189 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + V+VDNDCVM+ALAEKW + +DFCV+NVDYGIGSSF+IN IYRG +YGSGQIGH Sbjct: 190 NVDVLVDNDCVMIALAEKWLDGHDGQDFCVLNVDYGIGSSFLINNNIYRGKMYGSGQIGH 249 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 T V +G++C CGR GCLET AS AL + Q + ++ + + Sbjct: 250 TKVTDNGIICGCGREGCLETEASSKALCDKY----LRQTSLLTQESVPISFDDFVTRYDR 305 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 + + +AN +G SLYNFL L+IN+I LYG +CA G+ WL I +QT NPF+ Sbjct: 306 QDAIAQDVANHAANIVGQSLYNFLITLDINKIILYGNTCALGDKWLKAITKQTLNNPFED 365 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 T + +G LS + V+G+ YL+VE +L ++ Sbjct: 366 KTARKQDQTLVSYGALSNVELVMGMSYLWVEQELDEL 402 >UniRef50_B8I1T3 ROK family protein n=2 Tax=Clostridium RepID=B8I1T3_CLOCE Length = 399 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 83/401 (20%), Positives = 174/401 (43%), Gaps = 13/401 (3%) Query: 1 MRAC--INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVV 58 MR NN+ ++ N+ +LEL+ K+ +K+ LA++ +S A I+ L + + Sbjct: 1 MRMGKAGNNKLLKEINETSLLELIRINKQVSKAGLAQITGLSPTACGTIVTNLLDKGYIR 60 Query: 59 NIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSP----KGEFEYLQID 114 + G + + P +++ +++ I + + + ++ + Sbjct: 61 EAGIGTSKGGRRPILYELTPGSYFSIGVDIDIDYIRFILMDITGQVEFKDRISCDFARAA 120 Query: 115 APTPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKY 174 + + + + +I + + + D + + +++ G +D +T P W V +++ Sbjct: 121 SESIRLMEEKISEII-KIHNIEHDRLLGVGVSVPGMIDNLTHEIIFAPNLGWER-VNLEH 178 Query: 175 LLEEKLGIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLY 233 +++ + VDN+ + AL E W ERDF IN+ GIGSS +YRG Sbjct: 179 MMDRIGDFPIYVDNEAMCSALCENWIGCCMDERDFVCINMKSGIGSSIFAAGNLYRGCCG 238 Query: 234 GSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQ 293 +G+IGH V+ +G C CG YGCLE + S ++ ++A+ ++ ++ D E +T + Sbjct: 239 SAGEIGHITVDQNGPRCACGNYGCLEALVSARSMVEKAQKLVRQGLITDFEDIEAITVDE 298 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT 353 + + G + +A +GL++ N +N +N ++I L F E+ I+ Sbjct: 299 IFRLAREGNESARVILVEAAGYLGLAIANLINTVNPSKIVLGKELAKFSED----IVDHL 354 Query: 354 GFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + Q+ ++ LG + V+ Sbjct: 355 KSIASAKALKYPASRVQVVVSKIGEDTSALGAAIIPVKKLF 395 >UniRef50_B1YIH1 ROK family protein n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YIH1_EXIS2 Length = 386 Score = 318 bits (815), Expect = 3e-85, Method: Composition-based stats. Identities = 83/395 (21%), Positives = 168/395 (42%), Gaps = 19/395 (4%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N++ +R +N+ ++L L+ + ++ LA+ +++ P VSNI+ EL +++ V+ + Sbjct: 8 NSKWMRSYNRALVLRLIRMHQPISRVELAQQTKLTKPTVSNIVGELIADQLVMERELGVS 67 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEI 125 G + + + + ++ T +A+ + E E + T + L+ + Sbjct: 68 NGGRKPILLELVAKEQYVIGIDATSHRFIGVIADLSGNTIHEVETMG-KFDTNEELMEAV 126 Query: 126 EKCWHRHRKLWP--DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIR 183 + + + +++HG V+P TGV P+ V +K LE++ Sbjct: 127 VQLCQQLIDATDQVGTIHGIGISVHGMVNPETGVILFAPRFHLHD-VALKEHLEQRFAYP 185 Query: 184 VMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 V ++ND LA E D F + GIG ++V++ ++ G + +G++GH Sbjct: 186 VFIENDVRALASFELLFGEGVGVDQFFYLYAGEGIGGAYVLDGKLIDGENHITGEVGHMR 245 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 ++ DG +C CG GCLE +A AL + +DP+ T +L + Sbjct: 246 LDLDGPICSCGNRGCLEALAGEKALLRDFEA----------VDPQVKTLTELRRRLTDQD 295 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDE 362 P T+ R+ IG+ + N ++++N +I L G + ++ I + Sbjct: 296 PHATAAYHRAGEYIGIGVLNTIHLINPKRILLGGPMFELAPSIVDQIKERVE----HTAL 351 Query: 363 GPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 + + T + S Q L L + + I Sbjct: 352 TTASRETDVKMVPWSEKQGALSAAALATNSIFQTI 386 >UniRef50_C8WTP1 ROK family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WTP1_ALIAD Length = 409 Score = 316 bits (811), Expect = 7e-85, Method: Composition-based stats. Identities = 74/395 (18%), Positives = 136/395 (34%), Gaps = 19/395 (4%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 + ++ NK ++L + ++S ++ ++ VS + EL + V+ + Sbjct: 15 TADQALMKEINKSIVLNRIRFHSPISRSQISSETGLNKATVSALTDELIRDGLVLEVGQG 74 Query: 64 SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLS 123 G L + + + + + + E + +L Sbjct: 75 RSRVGRRPIMLLFNASAGSVIGVELGVEYVRVAITDFAARALSVREEPLPRNLGAEEVLE 134 Query: 124 EIEKCWHRHRKLWPDH---TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 + + P+ I + + + G VD GV P W + +K ++E Sbjct: 135 RLRASIAQALAEAPESRYGVIGIGVGVPGLVDFARGVVLRAPHIKWEN-IPLKAMMESWF 193 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 G V+VDN+ AL EK + I+ GIG+ VI +++ RG+ +G+ G Sbjct: 194 GKPVLVDNEANAGALGEKLYGAATHVSSLVYISAGTGIGTGIVIGDELIRGADGVAGEFG 253 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 H ++ G C CG GC E AS AL +L E+L ++A ++ Sbjct: 254 HMSIDLHGETCPCGNVGCWELYASERALV----------AAYAKLTGEELDFDGVLARFR 303 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 + +P +G N +N LN + L R G + Sbjct: 304 ASDPAALQAFQTVGRYLGAGAVNLVNGLNPAMMILGNRLAEGGRM----VTDAMQQAILS 359 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 R S + L R +G L + Sbjct: 360 RCLVSSYAKVVVQVSALGRDACAIGSAALVLHDFF 394 >UniRef50_Q8ELU2 Transcriptional repressor of the xylose operon n=3 Tax=Bacillaceae RepID=Q8ELU2_OCEIH Length = 400 Score = 314 bits (806), Expect = 3e-84, Method: Composition-based stats. Identities = 75/397 (18%), Positives = 160/397 (40%), Gaps = 17/397 (4%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 N ++ NK ++ + + +++ +A+ ++ VS+++ EL +E+ + + Sbjct: 5 RTWNQYVVKQENKSLVFNTIRQNSPISRADIAQQLGLNKSTVSSLVSELINEELIGEVGP 64 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 + G +++ +++ I + + + E E + D T + +L Sbjct: 65 GESSGGRRPVMLFFNNTAGYSIGIDLGVNYILGVLTDLQGNIL-EQEQVTFDNLTYEEIL 123 Query: 123 SEIEKCWHRHRKL---WPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + + + + P I + +A+ G V+ P W + +K LE + Sbjct: 124 VHLNEVIQKLITMTSKSPYGVIGIGVAVPGIVNKEE-KILLAPNLNWRN-ISLKEELENQ 181 Query: 180 LGIRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 I V+++N+ A E + ++ ++V GIG V+N Q+Y+G+ SG++ Sbjct: 182 FNIPVIIENEANAGAYGEVQFGIGKENKEIVYVSVGVGIGVGLVLNNQLYKGNNGFSGEM 241 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH ++ G C CG GC E AS AL + A+ + DP L +I Sbjct: 242 GHMTIDAHGAKCSCGSEGCWELYASEKALLQLAK-----RNKIYTTDPYDL-LDHMIQLA 295 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 ++ + + + + + + N +N N Q+ + R A + ++ Sbjct: 296 KNNDSVALEAFNEISKYLAIGINNIINSFNPEQVIIGNRMSAAKKWIEKPLLDSIN---- 351 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 ++ S K +I F L+ LG+ E L+ Sbjct: 352 NQSLWFSQKDLKIDFSSLNTHSNALGMAAFSSERFLK 388 >UniRef50_UPI0001C3682C ROK family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3682C Length = 404 Score = 314 bits (805), Expect = 4e-84, Method: Composition-based stats. Identities = 86/402 (21%), Positives = 168/402 (41%), Gaps = 11/402 (2%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M N Q+++ N+ +L + R A K+ LA + ++ A+ IL EL+ + + Sbjct: 1 MADQNNQVQLKNFNRRTVLGYIRRNGTATKAGLASVTGLTFMAIKKILAELQELNLIRDG 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ- 119 ES G + +++I +T+ +++ + N Y Q Sbjct: 61 QMESGGMGRKAVSYVINENYRYTIGIHINKFITGIALLNLRGQILAIERYSMDKEFENQN 120 Query: 120 ---ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 +L+E + + + + + + G +D +GV T P P + +K L Sbjct: 121 DFVTMLAEAVELVIEKSGVKREDILGIGVGAPGPLDCESGVILTPPNMPMLDYLPLKETL 180 Query: 177 EEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 E + G V ++ D ++A AE W N+++ + + VD GIGS +I+ ++ G+ + Sbjct: 181 EGRTGFPVFLNKDTNVIAFAEYWYRNNRDCSNLAYVEVDMGIGSGLIIDGKLNVGANCIA 240 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEK-LTTAQL 294 G+ GH ++ +G +C+CG GCLE ++S A+ + L++Q LT + Sbjct: 241 GEFGHITIDINGPLCNCGNRGCLEAMSSGIAVLRMLGEQLENQKDHPLYHKRNALTIEDV 300 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTG 354 + S ++RSA +G+++ N +N + I L G + N I++ Sbjct: 301 FEMTDKKDLLTISILNRSAFYVGVAVSNLINTFDPEMIILGGILIQKYPMYFN-IVQDVA 359 Query: 355 FNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 + + A L V+G G + + Q Sbjct: 360 NQRKVKGAKENYMAV----SVLGENAGVIGAGEIVTDHFFNQ 397 >UniRef50_Q9K992 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus halodurans RepID=Q9K992_BACHD Length = 386 Score = 314 bits (804), Expect = 4e-84, Method: Composition-based stats. Identities = 81/400 (20%), Positives = 163/400 (40%), Gaps = 21/400 (5%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M + + I+ NK ++L+ + ++ +++ ++ ++ VS+++ EL ++ V + Sbjct: 1 MSVTGDQRFIKQMNKQIVLQTIRKEAPLSRAQVSLTTGLNKGTVSSLVAELIADNLVYEV 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 + G + + + + +N+ + + + + + E+ + Sbjct: 61 GPGESSGGRRPVMLMFQNKAAYAIGINIAVNYLSGVLTDLVGNVIEKVEW-SLHVKEFDH 119 Query: 121 LLSEIEKCWHRHRKLWP---DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 + ++ + + K P I + +A+ G V+ G P W + +K LE Sbjct: 120 VNQQMVQLIEQLMKAAPPSTYGIIGIGVAVPGIVN-EEGDVLFAPNLNWR-EIPLKKQLE 177 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 E + + V+N+ AL EK +E + ++ GIGS + +YRG SG Sbjct: 178 EHFQLPIAVENEANAGALGEKVFGKGKESENMIFFSIGIGIGSGIIFGNSLYRGKGGYSG 237 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 ++GH + +G +C CG GC E AS A+ +Q + E LT L Sbjct: 238 EVGHMSIETNGPLCTCGNKGCWELFASEKAVLQQGEALYE----------EVLTLDDLFE 287 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 + GE + +G + N +N LN + + R G WL ++QT Sbjct: 288 KARKGEQTAIDLFQKIGVYLGTGIANMINALNPELVVVGNRMVK-GRPWLEHSLKQTVA- 345 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 DR + + F L+ LG+ YL +++ L + Sbjct: 346 --DRALSFHAEQVLVEFSDLNENGISLGVSYLLIDSFLEK 383 >UniRef50_C8WRQ2 ROK family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRQ2_ALIAD Length = 399 Score = 313 bits (803), Expect = 6e-84, Method: Composition-based stats. Identities = 88/401 (21%), Positives = 155/401 (38%), Gaps = 19/401 (4%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M A ++ +R N+ +L+L+ + ++ ++++ ++ VSNI+ EL +E+ V+ + Sbjct: 1 MHANVDASAMRRMNRATVLKLIRDLRTTSRIDISQMTGLNKATVSNIVDELIAEQLVLEV 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSP-------KGEFEYLQI 113 S + G + + ++V + + V N P G E + Sbjct: 61 GYGSSSGGRKPILLRFNANAAYAIGVDVQLSHMTTVVCNIRGEPVYRQVRTLGLSEAPDV 120 Query: 114 DAPTPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVK 173 A +A+ E+ K P + LA G VD G +P + E+ Sbjct: 121 RAVLLEAIEEELRKAI-AAAPPSPYGLLGACLAFPGMVDFRRGAVYYLPSL-FVGEWEIL 178 Query: 174 YLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLY 233 L + I + +DND A E + ++ +N+ GIG+ VI ++YRG Sbjct: 179 ADLGRSVDIPLFLDNDANCGAWNEYMAQAMKLKNLVFVNMGLGIGAGIVIEGKLYRGRDG 238 Query: 234 GSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQ 293 +G+ GH +NP G C CG YGC E AS L + R + D Q Sbjct: 239 IAGEAGHMTINPMGSACMCGGYGCWEEYASERGLMRYLREAGADLSALSLRDS---LLEQ 295 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT 353 + Q+ +GL + N LN+LN +++ L G L + R Sbjct: 296 ALEQAQNDNRACIRAFHSLGQYLGLGIANLLNLLNPDEVILGGSVARAATFVLPEVERVI 355 Query: 354 GFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 +++ V+ S+ +G L V L Sbjct: 356 KHRALLQNKQIPVRVG-------SQHAVAIGASLLAVHETL 389 >UniRef50_Q724N5 Xylose repressor protein n=19 Tax=Listeria RepID=Q724N5_LISMF Length = 404 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 82/396 (20%), Positives = 152/396 (38%), Gaps = 11/396 (2%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 N I+ N+ +L L+ + ++ +A+ + ++ IL +L+ E ++ + Sbjct: 5 RKGNKDLIKDINRYTVLNLIREKGEITRTEIAKKCDFGMSTLTYILDDLQQEGIILEGAE 64 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 S T G + + + + + V + + + P+ + Sbjct: 65 TSSTGGRRAKLVRFNKDYGFVVSVKVEEEQLLFALTDLNAEIMENTSIPFSSEKKPEEAI 124 Query: 123 SEIEKCWHRH-RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL- 180 I K + +H + + +AI G V+ G W V ++ +L Sbjct: 125 ELIAKNVKKMCENRDMNHLLGVGIAISGLVNRRKGTVIRSTMLGWEN-VALEAMLHAYFP 183 Query: 181 GIRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 I V VD + LAE W Q +F ++V G+G S VIN QIY G+ G+G+ G Sbjct: 184 DIPVYVDKNINCYTLAELWLGEGKQSNNFATVSVGAGLGLSVVINRQIYYGAQGGAGEFG 243 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 HT + P G C CG+ GCLE AS + + ++ P S D ++ + + Sbjct: 244 HTTIQPGGYKCHCGQKGCLEMYASEFYFRNRGEELKEAYPTSELKDFH---FDKVAKSAR 300 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 +G+ T + + +G + N +N N ++ + G + +L I N F Sbjct: 301 AGDEMATELMGKMGEYLGYGIRNIINTFNPEKVIIVGEGLHHRDLFLTKIDEIASQNFFS 360 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 T+I L + G L + + Sbjct: 361 GAGF----ETEITTTSLEDPAWLQGAALLVIHQLFQ 392 >UniRef50_Q65DK2 Transcriptional regulator XylR n=2 Tax=Bacillus licheniformis RepID=Q65DK2_BACLD Length = 387 Score = 311 bits (798), Expect = 2e-83, Method: Composition-based stats. Identities = 76/395 (19%), Positives = 146/395 (36%), Gaps = 20/395 (5%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 + ++ NK +I E + +++ L+ + ++ VS+ + L + + Sbjct: 3 TADQALVKKMNKALIFEQIIENGPVSRAKLSEITGLNKATVSSQVSSLLQKDIIYETGPG 62 Query: 64 SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYL--QIDAPTPQAL 121 + G + + + ++V I + + +FE + D + Sbjct: 63 ESSGGRRPVMLKFNRKAGYAVGVDVGTNYIIVALTDLEGHLIEQFERTLDEEDIQATEEA 122 Query: 122 LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 L E+ P + + + G VD V P P + +K LEE+ G Sbjct: 123 LIELTGLAVDKIPPSPFGLTGIGVCVPGLVDNERHVV-FTPNKPIH-LIPIKEKLEERFG 180 Query: 182 IRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + ++++N+ A+ EK Q ++++ GIG ++N +++RG SG+ GH Sbjct: 181 VPILIENEANAGAVGEKEYGEGGQLEHAVFVSINTGIGLGILMNGKLFRGVQGFSGEAGH 240 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 ++ DG +C CG GC E AS A+ +Q + Sbjct: 241 MSIHFDGPLCRCGNRGCWELYASEKAVFSHYAANSGAQL-----------YETVKELADR 289 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 G+P + +R IG+ L N L LN + I L + ++ I + R Sbjct: 290 GDPGMMETFERFGFHIGIGLLNILKTLNPDTIILRNTIVESYPSIVDAIKKTIA----SR 345 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 ++ + L R LG+ L E L Sbjct: 346 SAAEALSNYHLKISTLGRTASALGMSSLVTERFLE 380 >UniRef50_Q5WKJ0 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WKJ0_BACSK Length = 391 Score = 310 bits (796), Expect = 4e-83, Method: Composition-based stats. Identities = 71/397 (17%), Positives = 156/397 (39%), Gaps = 20/397 (5%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 I+++ ++ NK + L+ R +++ +A+ + ++ VS ++ +L + V I Sbjct: 2 ITIDHETMKDMNKSTVFRLIQRHAPISRADIAKRSGLNKATVSALVAQLIENQFVYEIGT 61 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 + G + +++ + + + + E + + + +L Sbjct: 62 GDSSGGRKPVLLYCNDRASHAISVDIGVNGLLGIITDLSGKTIAKRE-MALTSKEFNIVL 120 Query: 123 S---EIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + I + P + ++ G VD G P W V++K LE Sbjct: 121 ANTEAIIEQLIHEAPPSPYGICGITASVPGIVDSK-GNILLAPNLGWEN-VDIKTALEHT 178 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQERDFC-VINVDYGIGSSFVINEQIYRGSLYGSGQI 238 + V+V N+ AL EK + I+V GIG+ +I+ +++ G+ +G+ Sbjct: 179 FKLPVVVINEANAGALGEKQYGVGKPYSAISYISVSIGIGTGQIIDGKLFTGANGFAGEF 238 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH ++ G C CG GC E +S AL + A + ++ ++ +++AA Sbjct: 239 GHMSIDRHGKQCRCGNQGCWELYSSEKALLEIA---------AINMNRRSISFEEVLAAA 289 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 ++G +++G+ L + ++ +N I + R + ++ I +T Sbjct: 290 ETGNQAALDAFATVGHSLGIGLVSMIHSMNPEAIIIGNRFAKL-KPYIQIPIEETLAKHL 348 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 KA ++ F +L + +LG L Sbjct: 349 PSYYQ---KAVKLLFSELGQEAPLLGGSLLATSQFFN 382 >UniRef50_D1CIH3 ROK family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CIH3_THET1 Length = 418 Score = 309 bits (793), Expect = 9e-83, Method: Composition-based stats. Identities = 91/401 (22%), Positives = 164/401 (40%), Gaps = 11/401 (2%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 + + +R N ++L +L ++++LA + ++ VS+++ EL V + Sbjct: 5 KHTGDQALVRELNLSIVLNVLREHSPLSRASLAAITGLNRATVSSLINELTRAGLVWEVG 64 Query: 62 DESQT-RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 E+ G + P + + V I +A+ + D +P+ Sbjct: 65 IEATDDVGRPGRLLELDPHAGRIIGMEVGVDFIALAIADFSSQIIWKRWVELTDGKSPEE 124 Query: 121 LLSEIEKCWHRHRKLWPDH---TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 +L +L + L + + G VD G P W V V+ + E Sbjct: 125 VLGLAADLIQEGVELTDKEYGQVLGLGVGVPGLVDVPRGHLLFAPNLGWRD-VPVRSMFE 183 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSG 236 E+ V V+N+ M AL E + ++ + I+ G+G V+ QI RG++ SG Sbjct: 184 ERFPFTVYVENEANMAALGESYFGVARGYNCVLYISAGVGVGGGIVLGGQIMRGAMGFSG 243 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQ-ARVWLKSQPVSTQLDPEKLTTAQLI 295 ++GH + DG +C CG GC ET+AS SAL ++ ++ + + LT ++ Sbjct: 244 EVGHMTMVEDGPICGCGNRGCWETLASESALVRRMLEALRRAGETPSWARDDHLTVPTVL 303 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF 355 A ++G+ ++ A +GL + N +N+LN + L G G+ L TI Sbjct: 304 EAARAGDRLARGVLNEVARDVGLGIANLVNVLNPEIVVLGGMLSMGGDLMLPTIRETLE- 362 Query: 356 NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 R V+ ++ L R VLG + L Q Sbjct: 363 ---HRGLRWLVQPLRLELAALGRESCVLGGIATVYDRVLSQ 400 >UniRef50_C5ETA5 ROK domain containing protein n=2 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ETA5_9FIRM Length = 406 Score = 309 bits (793), Expect = 1e-82, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 157/377 (41%), Gaps = 14/377 (3%) Query: 12 HHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSS 71 N+ +++++ Q NK+ +AR +SIP V I E E + G Sbjct: 3 QLNRKSVIDIIRTQSPINKAQIARQTGLSIPTVMKITDEFERNHLIRVNGKGESNGGKRP 62 Query: 72 GTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWH- 130 I P+ + + ++V + I+ + + + Q L+ + H Sbjct: 63 ELLEIIPDAYYIIGVDVGRSRIKAIIMDLSGKLIVKESIKTGRTVPSQQLIERLIYLIHQ 122 Query: 131 --RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDN 188 + + + L + + G +D G P W VE+ +E+ +++N Sbjct: 123 VVQESNISVSQFLGLGIGMPGLLDTENGTVLFSPDFHWEN-VELVKPIEDHFPFYTILEN 181 Query: 189 DCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDG 247 +A+ E W E F +N+ +GIGS+ V N + YRGS SG+IGH + DG Sbjct: 182 SNRAMAMGEHWFGAGVESSYFICLNLGHGIGSAIVQNGEFYRGSCGSSGEIGHITLEKDG 241 Query: 248 VVCDCGRYGCLETVASLSALKKQARVWLKSQP-----VSTQLDPEKLTTAQLIAAWQSGE 302 +C CG GCLE +AS +A+ QAR ++ Q + E + ++ A + G+ Sbjct: 242 PLCSCGNRGCLEALASANAMAGQARELVRQGKGQRILELAQGNEENIDAKEIFDAAKEGD 301 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDE 362 VD++ IG+ L N++N+L+ + + L G G+ + + R R Sbjct: 302 AAAALIVDKAIEYIGIGLANYINLLDPDMLILAGGVTGAGDYLITRLKRVIK----ARQM 357 Query: 363 GPSVKATQIGFGQLSRA 379 + + +I +L Sbjct: 358 KFAGRKVKIRISKLGND 374 >UniRef50_A8FE34 Transcriptional regulator n=5 Tax=Bacillus RepID=A8FE34_BACP2 Length = 386 Score = 308 bits (789), Expect = 2e-82, Method: Composition-based stats. Identities = 78/395 (19%), Positives = 155/395 (39%), Gaps = 22/395 (5%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 + ++ N+ ++L+ + + +++ L+ ++ VS+ + L E+ V I Sbjct: 5 DQNFVKKINQKLLLKEILQHAPISRAKLSERTGLNKSTVSSQVSTLMKEQLVYEIGQGES 64 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ---ALL 122 + G + ++ ++V + + + S E E + + + P +L Sbjct: 65 SGGRRPVLLMFNKRAGCSIGIDVGVDYVNGILTDLEGSILHE-EQINLPSSAPDVTIRIL 123 Query: 123 SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 +E+ + P I + L I G VD + P + W V++K L++ + Sbjct: 124 TELIQQLMSQIPSSPYGLIGIGLCIPGLVDADQQIV-FTPHSKWKN-VDLKKALQDAFQV 181 Query: 183 RVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V ++N+ A EK ++ D ++ GIG +IN +YRG+ SG++GH Sbjct: 182 PVFIENEANAGAYGEKIFGAAKHYDHLIYASIGTGIGIGIIINHHLYRGAYGFSGEMGHM 241 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 ++ +G C CG GC E AS AL + S Q + + ++ + Sbjct: 242 TIDFNGPTCSCGNRGCWELYASEKALFQ-----------SLQTNEKPISHQDVEQLATLN 290 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 + + + +G+ L N L+ N I L + L I + R Sbjct: 291 DMKTLNALRNFGFYLGVGLTNVLHTFNPQAIILRNKVIESQPTVLRVIQEEVS----SRI 346 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 + ++ L VLG+ L +EA L+ Sbjct: 347 DTQFSSHVELLPSSLGHNAPVLGMTSLVIEAFLQD 381 >UniRef50_UPI00017885B4 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017885B4 Length = 403 Score = 308 bits (789), Expect = 3e-82, Method: Composition-based stats. Identities = 85/402 (21%), Positives = 170/402 (42%), Gaps = 16/402 (3%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ N++ I+ N+ +L + + ++ LA+ ++S V++ +QEL E V I Sbjct: 4 MKKG-NHKLIQALNRSKVLNKIRTEGPISRIELAKKNKLSPSTVASAVQELIREGYVSEI 62 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 S + G P+ + L +++T + + N + E I +A Sbjct: 63 GTGSSSGGRKPILLKFNPDNHFLLAVSITNSVMILARMNLEAKVFAK-ETHPIAGLQGEA 121 Query: 121 LLSEIEKCWHRHRKLWPD--HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 ++ + + D + +++ + G V GV + T V +K + E+ Sbjct: 122 VIERLLQLMDDFMAGQEDLERCVGISINVPGIVSDSHGVVHYNTKLRMTN-VPLKRIFED 180 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 + G+R V+ND + LAE+ + + I++ G+GS +IN+ + RG G+G+ Sbjct: 181 RYGMRTWVENDMNSVVLAERRFGDYAFANLIYISIGDGLGSGILINDHLLRGKHGGAGEF 240 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVS-----TQLDPEKLTTAQ 293 GHT VN G+ C+CG GCL++ S A+ + + + + + D K+ + Sbjct: 241 GHTSVNRSGIRCECGNAGCLDSYISWIAVYSRIITAIATGRPTMIQELSGGDYSKIVPSV 300 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT 353 A + G+ + A +G ++ N +N+ N + L G L+ + Sbjct: 301 FKEALRKGDKLARDLNEEVAEHLGAAIVNLVNMFNPEALILGGDLAHGNPELLDMV---- 356 Query: 354 GFNPFDRDEGPSVKATQI-GFGQLSRAQQVLGIGYLYVEAQL 394 DR P +K + G L +++G + ++ L Sbjct: 357 -SVYIDRHAMPILKDDMVFGLASLGEEDKLMGAASVLLQDLL 397 >UniRef50_A5V137 ROK family protein n=2 Tax=Roseiflexus RepID=A5V137_ROSS1 Length = 408 Score = 307 bits (787), Expect = 4e-82, Method: Composition-based stats. Identities = 84/396 (21%), Positives = 168/396 (42%), Gaps = 10/396 (2%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 A Q R+HN ++L ++Y + +++ +AR ++ VS ++ EL + + Sbjct: 6 AKATRQHTRNHNSRLVLRVIYEDEAISRADIARKTGLTRTTVSAVVNELIEQGLIEETGA 65 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 + G + E L+ T I + + + + + P+ L Sbjct: 66 GQSSGGRLPILLRVVHESHCVAALSFEDTQIVGALVDMRGGIQRRV-SVPLQGYRPEDLP 124 Query: 123 SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 + + H + + L++ G VDPV G+ + ++ LL+++ + Sbjct: 125 GYLTQLLDDLTADPAPHILGIGLSMPGIVDPVRGMVRRAVNFGLVD-TPLRQLLQDQYRL 183 Query: 183 RVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V +DN + ALAE + + VI++ G+G+ V+N ++ G +G+G+IGH Sbjct: 184 PVYLDNAARLTALAEYMFGDGAASGNLVVISIGVGVGAGIVLNGALFSGDGFGAGEIGHV 243 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWL---KSQPVSTQLDPEKLTTAQLIAAW 298 +V +G+ C+CG GCLETVAS++A+ + AR S+ S + A Sbjct: 244 VVADNGIRCNCGNVGCLETVASVTAIVRAARRLATDPSSRLRSLASAAAAIDFNTFCRAL 303 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 + G+ + V +G+++ + + +LN+ +I L G A G L + + Sbjct: 304 EEGDDGVAGIVTEVGRYLGIAVAHIVGLLNVERIVLTGAIAALGPPLLEAVKTSLARHAL 363 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 P T++ +LGI + ++ + Sbjct: 364 A----PLAAMTRVDLVPERHDAVLLGIAAMVLDHEF 395 >UniRef50_Q8EL07 Transcriptional repressor of the xylose operon n=1 Tax=Oceanobacillus iheyensis RepID=Q8EL07_OCEIH Length = 402 Score = 307 bits (787), Expect = 5e-82, Method: Composition-based stats. Identities = 76/404 (18%), Positives = 163/404 (40%), Gaps = 14/404 (3%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M N + I+ N+ +IL+ + ++ ++S +A+ IS V+ + EL K V Sbjct: 1 MSRTGNLKLIQELNRSLILDTIRKKGPISRSDIAKKLTISPTTVTTAVSELIEGKIVYED 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQID--APTP 118 + G P+ + +++T + I+ N K + + + Sbjct: 61 GVGNSNGGRKPVLLRFNPDTHSIIGVSITNSKIKIAEMNLEGKVKKKSVEITNNEQGEDI 120 Query: 119 QALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 L+ E K + ++ K+ D+ +++ G V+ G + +K ++E Sbjct: 121 IKLVIETLKTFIKNEKVNLDYCEGVSIITPGIVNSEEGCISYNSHLGLYN-IPLKKMVES 179 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQERDFC-VINVDYGIGSSFVINEQIYRGSLYGSGQ 237 +G+ ++ND AE + + + + + GIGS +IN+ IY+G +G+ Sbjct: 180 TIGLPTFLENDVNAFVSAESYFGSYNHYNSILFLTIGDGIGSGIMINDSIYKGYKGSAGE 239 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQL------DPEKLTT 291 IGHT V P G+ C CG GC+E + ++ + + ++ T + D K+T Sbjct: 240 IGHTTVVPGGIKCKCGNSGCVENYVNWPSIHSRIVSAIITKGRDTLIKNYIGNDFTKITP 299 Query: 292 AQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIR 351 + A + + +D N + +++ N ++ L+ I L G + +++ + Sbjct: 300 DMFVLAIRENDELCKEIMDDMVNYLSITIVNAIHTLSPELIILSGAIIHGNQVFIDQLQE 359 Query: 352 QTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + R + L +LG + ++ + R Sbjct: 360 EVKK----RLLPIIREDVNFQSTSLGPDFDLLGAASVILQGRFR 399 >UniRef50_C5CH51 ROK family protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CH51_KOSOT Length = 408 Score = 307 bits (786), Expect = 7e-82, Method: Composition-based stats. Identities = 88/399 (22%), Positives = 172/399 (43%), Gaps = 12/399 (3%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 ++ + I+ N+ +IL+ +Y K+ +++++A+ +S AV+ I EL + V+ Sbjct: 8 VKRRGSKHLIKEINEKLILKTIYENKKIDRASIAKFTGLSPAAVTKITAELINRGMVLEA 67 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 + G + P+ L + + +E + + + E ++ P Sbjct: 68 GSAESSGGRKPILLSLNPKFGQFLGVKIGVGYVELVITDFTCTIV-ESARCDTESSDPGT 126 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 +++ I+ CW + R+ + + +A+ G VD G+ + W V + LL+E Sbjct: 127 IVNVIKNCWEKCRQEKQSILLGIGIAVSGVVDSKEGIVRDSFLLGWRD-VPIASLLKEVF 185 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 V+V ND A++ W +++ + VI + GIG + +I+ +I+ + G G+IG Sbjct: 186 KCEVLVMNDVDSFAMSHLWLGKAKDHSNTVVITLGVGIGGALIIDGKIHN-AKGGVGEIG 244 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPV----STQLDPEKLTTAQLI 295 H V DG C CG GCLE AS AL K+ +S+ + + E L Sbjct: 245 HMTVVKDGAKCTCGSNGCLEAEASFGALAKKISSITESKKLKELYKSVKQSESSEIEYLR 304 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF 355 A + + A +G++L N +N+L + + + G + F E +LN I+ Sbjct: 305 EALKRDRKAFNHVFEEYAVLVGIALKNIINMLAPDYLLIGGEALEFQEKFLNKAIQYAQK 364 Query: 356 NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 N F + + L LG+ ++ ++ Sbjct: 365 NAFGKLG----EKVMFNVDDLGEVAWNLGVIFVLMDNLF 399 >UniRef50_D1BAX4 Transcriptional regulator/sugar kinase n=2 Tax=Actinomycetales RepID=D1BAX4_SANKS Length = 410 Score = 305 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 98/400 (24%), Positives = 175/400 (43%), Gaps = 10/400 (2%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + +R ++ +L + + A + L++ +S+ VS +++E + V Sbjct: 2 TRRTARDLRSDSRSAVLRAFFSLRTATRQELSQHTGLSVATVSTLVKEFLTAGVVHVEAV 61 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEY-LQIDAPTPQAL 121 S G + P + + ++V T +E V + L P+G L +PQ + Sbjct: 62 VSSGVGRPLEQLRLDPSRGYIVGVDVAETYVETTVFDLSLDPRGTVSVPLDEHQNSPQYV 121 Query: 122 LSEIEKCWH---RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 + I H + + + +++ GQV P GVS P W V +K LL Sbjct: 122 VDGIRLAVHGVLALAGVSTSSVVGVGVSLPGQVQPDLGVSVFAPNWAWHD-VRIKELLTA 180 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 +LG+ V VDN +A+AE W + RD ++N+ G+GS VIN ++ RG +G+ Sbjct: 181 ELGMHVHVDNPLKAIAVAELWFGAGREHRDLAIVNLGTGVGSGLVINGELVRGVSNNAGE 240 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 GHT++ DG +C CGR GC+E ++ +K P Q + + + Sbjct: 241 WGHTLLALDGRLCRCGRQGCVEAYVGVNGMKATLSEIQPDHPALLQQEQRRF-VDAVYEG 299 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNP 357 +G+P VD +A + SL + +N++N + L G + A +WL ++R + Sbjct: 300 VVAGDPVFVELVDETARYLAASLGDLVNMINPEHVVLTGWTVARLGDWLIPLVRAKIPDA 359 Query: 358 FDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 R SV + L+ + LG+ L +E L + Sbjct: 360 ALRS---SVAVLTVSASSLASSTVALGMSTLTLEHFLAAV 396 >UniRef50_A4FQW3 Transcriptional regulator, ROK family n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FQW3_SACEN Length = 405 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 75/394 (19%), Positives = 163/394 (41%), Gaps = 11/394 (2%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 N ++ N+ V+L+ + ++ LA ++ +SNI++ L ++ V Sbjct: 8 GTNLPRVGGFNRAVVLDTIRAHGEVSRVELAERTGLTAQTMSNIVRALMADGLVAENGHA 67 Query: 64 SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLS 123 T G + P+ ++ L++ P SI + + + +P + + Sbjct: 68 PSTGGKRRVLLRVVPDAYSSVGLHLDPESITGVLLDLAGGVRLRSRRRVPQDASPATVAA 127 Query: 124 EIEKCWH---RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 + + R + + + LA+ G +D P P V + L+E++ Sbjct: 128 ALTRTLKQLVRRSGIDESRVLGVGLAVPGPLDADHRRVLGPPNLPGWDDVALADLVEQRA 187 Query: 181 GIRVMVDNDCVMLALAEKW-QNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 G+ V++DND A+ E+W ++ F + + G+G V+ +Q++RG+ +G+IG Sbjct: 188 GMPVVMDNDATAAAIGERWAAGKARRGSFVYVYLGAGVGVGVVLGDQVHRGTSNNAGEIG 247 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 H G C CG+ GCLE S+ A+ + S S + D ++ A Sbjct: 248 HVNGGGAGRPCSCGKRGCLEAYCSMRAIVDE----WLSATGSPEGDSVSADYEEICRAAA 303 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 G+ + ++A +G +L +++L+++ + L G + E + + + +T Sbjct: 304 GGDATAVRLLRQAATKLGQALATVVSVLDVDHVVLGGPALRHVEELVRSRVEKTLA---A 360 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 P+V+ ++ + +G L ++ Sbjct: 361 HVWAPAVRPVRVRTALIGEDAGAVGAASLVLDHA 394 >UniRef50_Q82LB9 Putative ROK-family transcriptional regulator n=1 Tax=Streptomyces avermitilis RepID=Q82LB9_STRAW Length = 424 Score = 304 bits (779), Expect = 4e-81, Method: Composition-based stats. Identities = 80/398 (20%), Positives = 161/398 (40%), Gaps = 12/398 (3%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 ++ IR N+ +L + + ++ LA +S+ V+ ++ EL + + E Sbjct: 14 TSRDIRTANRYEVLRQIIAKSPTSRQELAAATGLSLATVATLVGELLDLGMLTEVGFEDS 73 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEF-EYLQIDAPTPQALLSE 124 G G + G + +++ T + ++ + L E ++ P+ ++ Sbjct: 74 AGGRPRGLVAVNSGGGALIGVDIAETYVRVELFDLGLGQLARADEDMRPGESRPEQVVGH 133 Query: 125 ---IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + + + +++ GQVD G+++ P W V + LL E + Sbjct: 134 VAAAVGSVVAQAGVDGARVLGVGVSVPGQVDRDRGIAEYAPNWDWHD-VPLLSLLAEHIT 192 Query: 182 IRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + +DN A+AE W ++ R D V+N+ G+G+ + ++RG +G+ GH Sbjct: 193 HPLYLDNPLRACAVAELWFGAARGRGDAVVVNLGTGVGAGLALGGALHRGVSNSAGEWGH 252 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 T + DG +C CG +GC+ET + + R + P+ D + T L + Sbjct: 253 TTLVLDGRLCHCGNHGCVETYVGAPGIMQNLRELSPADPLLHPGD-QTATIDALARGVAA 311 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCA-FGENWLNTIIRQTGFNPFD 359 +P V +A +G + + +N+LN + L A GE L+ + + Sbjct: 312 RDPVALKVVRDTARYLGAGIADLVNLLNPEVVVLSSWVAATLGEPLLDEVREAVARHALR 371 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 R +T+I + LG +E L+ + Sbjct: 372 R----PFASTEIVLSPIPTDPVCLGAATFALEGALQSV 405 >UniRef50_A3DCE9 ROK domain containing protein n=2 Tax=Clostridium thermocellum RepID=A3DCE9_CLOTH Length = 404 Score = 303 bits (777), Expect = 6e-81, Method: Composition-based stats. Identities = 93/396 (23%), Positives = 176/396 (44%), Gaps = 15/396 (3%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 ++ I +N+ I + K N++ +A+ +SIPAV +I +L + + I Sbjct: 5 TKLDLNSITSNNRMNIFNCILEAKEINRAVIAKKVGLSIPAVMSITDDLIQKGIIYVIGK 64 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 + G + P+ + + ++V TS+ V N C + ++ P L+ Sbjct: 65 GKSSGGKRPELLAVVPDRFFFVGVDVGRTSVRVVVMNNCRDVVYKV-SKPTESVEPDELI 123 Query: 123 SEIEKCWHR---HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 ++I + K D + + +A+ G ++ TG P W + ++ L++ Sbjct: 124 NQITEMTMESINESKFPLDRVVGIGVAMPGLIERGTGRVIFSPNFGWNN-IALQDELKKH 182 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQERDFCV-INVDYGIGSSFVINEQIYRGSLYGSGQI 238 L V+V+N L + E V +N+ YGIGS+ V+ +Y G SG+I Sbjct: 183 LPFNVLVENANRALVIGEIKNTQPNPTSCIVGVNLGYGIGSAIVLPNGLYYGVSGTSGEI 242 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVST-----QLDPEKLTTAQ 293 GH IV G C CG YGC+E++AS A+ ++AR+ + ++ S+ + D +K+ Sbjct: 243 GHIIVENHGSYCSCGNYGCIESIASGEAIAREARIAIANKIQSSVFEKCEGDLKKIDAKM 302 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT 353 + A + G+ S V+++A+ IG L +N+L+ QI L G G+ +++ I + Sbjct: 303 VFDAAKEGDHLAQSIVEKAADYIGKGLAITINMLDPEQIILCGGLTLSGDFFIDMIKKAV 362 Query: 354 GFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLY 389 G +I G+ +G ++ Sbjct: 363 SKYQMRYAGG----NVKIVVGKSGLYATAIGGAWIV 394 >UniRef50_Q5WCD4 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WCD4_BACSK Length = 403 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 88/391 (22%), Positives = 165/391 (42%), Gaps = 14/391 (3%) Query: 9 QIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRG 68 Q+ N+ L L+ + +K+ +A+ Q+S + IL +L E V T G Sbjct: 2 QLHEVNRINALNLIRLRGPLSKNMIAKQIQVSPTTAATILNKLIDEGYVQEEGVGHSTGG 61 Query: 69 HSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKC 128 + P+ + + L++ +S+ N + E +Y Q+D+ +A + + K Sbjct: 62 RKPVLYRFNPDKSFIIALSLANSSVRIAALNLEGHVRSE-QYGQVDSLRGEAYIDFVMKT 120 Query: 129 WHRHRKLWP--DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMV 186 + D + +++ + G V G+ + V +K +E G+R V Sbjct: 121 LSEFIGRFEKLDECLGISIVVPGIVQAERGIVSYNAKLDLYD-VHLKQKVEAAFGLRTYV 179 Query: 187 DNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPD 246 DND + +AEK ++ ++ I+V G+GS +N IYRG +G+IGH V P Sbjct: 180 DNDMNAMMMAEKQFGTARYKEMLFISVGEGVGSGLSVNGSIYRGFSGSAGEIGHMSVLPG 239 Query: 247 GVVCDCGRYGCLETVASLSALKKQARVWLKSQPV------STQLDPEKLTTAQLIAAWQS 300 G C CG GCLE + A+ + +Q V S PE + + A + Sbjct: 240 GPACPCGNQGCLENYVNWPAIYSRILSAWLTQGVKTAIIESAAGRPEAIKPTDFVEAACA 299 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 G+P+ + V+ A ++ +++ N L++LN + L G + + R Sbjct: 300 GDPFALTVVEEMAESLAVAITNSLHLLNPQAVVLTGPHVQNNLPLFKRLNEKIN----SR 355 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVE 391 P + T++ L + +LG + ++ Sbjct: 356 ALNPIARHTEVKPASLETNKDILGALAVLLQ 386 >UniRef50_C6D7F4 ROK family protein n=2 Tax=Paenibacillus sp. JDR-2 RepID=C6D7F4_PAESJ Length = 396 Score = 301 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 74/397 (18%), Positives = 151/397 (38%), Gaps = 19/397 (4%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 + N + ++ N+ +++ L+ R++ +++ L + + ++ ++NI+ EL S VV Sbjct: 7 KRGTNLEDVQEMNRSLVIRLMRRREVCSRAELTQDSGLNQSTITNIINELISWGIVVETG 66 Query: 62 DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL 121 +G S + E + + + SI + + S + A Sbjct: 67 VIEGKKGRRSIGIKLNCEPYKIIGIRLARKSITVALYDLGGSEYKRQQIPINMADGSTNA 126 Query: 122 LSEIEKCWHRHRKLWP-DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 + +++ + + I + + G + G M P + ++ L ++ Sbjct: 127 FNRMKELIRDMMQSNAVGNVIAIGVVTPGPLLRDEGRIGLMTYFPGWEKINIQEELMQEF 186 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQERD--FCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 + V +++D ALA W + + G+G+ VI +++RGSL +G+I Sbjct: 187 ELPVYMEHDAKAGALAHWWFGTPLQEQGVMIYVAAGQGVGAGIVIEGKVFRGSLGMAGEI 246 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH ++ G C+CG GCLE S SAL + + S Q E + Sbjct: 247 GHMSIDYKGQQCECGNRGCLELYCSTSALLQTLKKEHASLKSIWQELKEVKSGET----- 301 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 V ++A +G L N +N N ++I L G+ L+T+ + Sbjct: 302 -------REAVRQAAWYLGFGLVNIINTFNPDRIILGDEMAEAGDLLLDTVKSVIKEHVL 354 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 I ++G + +E+ L Sbjct: 355 PD----VYSQLTIELASDDMDTMLVGSAIVAIESILD 387 >UniRef50_A7VWZ1 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWZ1_9CLOT Length = 394 Score = 301 bits (771), Expect = 3e-80, Method: Composition-based stats. Identities = 78/393 (19%), Positives = 159/393 (40%), Gaps = 19/393 (4%) Query: 7 NQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQT 66 + +R N +++ L+ + +++ L++ + + +++I+ L V+ Sbjct: 11 LKDLRESNIALVINLMRKFGICSRAELSKASGLVQSTITSIIDSLIKAGIVIETGSLVGG 70 Query: 67 RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKG-EFEYLQIDAPTPQALLSEI 125 RG S + E L + VT +S + + K E + D P ++ I Sbjct: 71 RGRRSIGIRLNTEKLIVLGIRVTRSSYTLAIIDIFGELKNLEKHSITKDLEDP-SVFERI 129 Query: 126 EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVM 185 + + + +A+ G S + W + E +L + V Sbjct: 130 LEDASTFLLKNDQKPVGVGMALPGPYLINEDTSLFLTNQGWKS-FTFTKKFESRLHLPVF 188 Query: 186 VDNDCVMLALAEKWQNNS--QERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV 243 V+ D + A+ E W NS + ++ G+G+ V++ +I RG+L +G+IGH + Sbjct: 189 VEQDSNVGAMGEWWFGNSEIGQGTKVFVSTGDGVGAGIVVDGKIQRGALGAAGEIGHMSI 248 Query: 244 NPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEP 303 N +G C CG GCLE S A+ K A+ K L L+ +++G Sbjct: 249 NFEGPQCQCGNKGCLELYCSEKAILKAAKCLSKPI----------LNFESLVTEYRAGNS 298 Query: 304 WITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEG 363 +T V+R+A G+ + N + N + + G G+++L+ + R + + Sbjct: 299 AVTEIVNRAAEMFGIGIANIAYLFNPGVVVVGGSYKKLGDSFLDQVNRTVRRHIY----P 354 Query: 364 PSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 + + F L ++GI + + L++ Sbjct: 355 LFYQNIGLQFSALEHDSCLIGIAAVVFDRLLKK 387 >UniRef50_C7QZA5 ROK family protein n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7QZA5_JONDD Length = 425 Score = 301 bits (771), Expect = 4e-80, Method: Composition-based stats. Identities = 85/389 (21%), Positives = 160/389 (41%), Gaps = 14/389 (3%) Query: 16 CVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWL 75 V+L+ + ++ +A++ ++ VS ++++L V+ I T G Sbjct: 15 SVVLDAIRAAGTISRVGIAQVTGLTGATVSTVVRKLLDAHLVIEIGRAESTGGKPRVLLE 74 Query: 76 IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEK---CWHRH 132 + P + + +++ +I V N +P +P ++ + Sbjct: 75 LNPTARYAVGVHLDHGAITYAVTNLAGAPVARLARPGPGNASPADVVIRMADEINMLVES 134 Query: 133 RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVM 192 + D + L L G + G+ T P + L + + V+++ND Sbjct: 135 IGIARDKLLGLGLVSPGPLSSRAGMHLTPPFMRSWEDFPLDTQLADVAQLPVLLENDATA 194 Query: 193 LALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCD 251 A+ E W + +E F + + G+G+ VIN YRG+ +G+IGHT N DG C Sbjct: 195 AAIGEYWSGGTQREESFAALYLGTGLGAGIVINGTAYRGTSGNAGEIGHTCANIDGPECW 254 Query: 252 CGRYGCLETVASLSALKKQARVWLK---SQPVSTQLDPEKLT--TAQLIAAWQSGEPWIT 306 CG GC E +A +A+ +A + + + T D +T A + A + G+ Sbjct: 255 CGARGCFEALAGPAAVVNEAYSDPRIVTAAALDTLGDHTPITQRFAAIARASRMGDTPSR 314 Query: 307 SWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT-GFNPFDRDEGPS 365 ++RSA +G++ + N+L++ + L G S A + IR T + F RD Sbjct: 315 QLLERSARYVGVAAQSVANLLDVRMLVLTGSSFAAASHIYVPAIRDTLAASFFARDN--- 371 Query: 366 VKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 A + Q + +G L ++AQ Sbjct: 372 -HAVHVQLSQSAETAPAIGAAALVLQAQF 399 >UniRef50_UPI0001788127 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788127 Length = 390 Score = 301 bits (771), Expect = 4e-80, Method: Composition-based stats. Identities = 80/399 (20%), Positives = 153/399 (38%), Gaps = 29/399 (7%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + ++ N +IL+ + + +++ +++L ++ VSN++QEL S V I Sbjct: 4 ITGDQALVKKINTSIILDTIRQHAPVSRAKVSKLTGLNKATVSNLVQELCSNHLVQEIGP 63 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 + G L + + + + + I + + E E ++A +++ Sbjct: 64 GESSGGRKPQLLLFNGQAGYAIGVELRVKQITAVLTDLEGRILAE-EDTALEAHGVESVT 122 Query: 123 SEIEKCWH---RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + H R P I + + + G VD G P W V ++ LE + Sbjct: 123 RLMVGMIHGLMRQAPPSPYGIIGIGVGVPGMVDGD-GTVLFAPNLGW-DMVPLQEQLELE 180 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 LG+ V +DN+ A E ++ R I+ GIGS +IN ++Y+G+ +G+ Sbjct: 181 LGLPVTIDNEANAGAQGELRFGAGRDARHLLYISAGSGIGSGIIINGELYKGARGYAGES 240 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH + +G C CG GC E AS + T++L+ Sbjct: 241 GHMSIEAEGRECSCGNRGCWELYAS------------EKSYDGKDAVLPSRRTSELVHHA 288 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAF---GENWLNTIIRQTGF 355 + G + +G+ + N +N N + + G E L ++ Q Sbjct: 289 ELGHKDTIRHFEELGRYLGIGITNLVNGFNPQSVIIGGPLSDARAWIEETLQQVVAQRTL 348 Query: 356 NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 P+ R+ +I F +L ++G Y + L Sbjct: 349 -PYHRERM------EIRFAELGSRSTMIGAAYSAISQFL 380 >UniRef50_A9BHH0 ROK family protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BHH0_PETMO Length = 385 Score = 300 bits (770), Expect = 4e-80, Method: Composition-based stats. Identities = 84/392 (21%), Positives = 160/392 (40%), Gaps = 16/392 (4%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 + ++ +N +I + L Q ++ +AR ++ VS I L +K + + E Sbjct: 5 SLSSLKENNAALIFQSLRIQGPMTRAEIARETRLMPSTVSYITNLLIHKKVLKEVGSEDV 64 Query: 66 TR-GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 +R G I + + +V V+N ++ LL + Sbjct: 65 SRVGKKGILLDINYDDFLFIGYDVGSAYSRVIVSNGKGDILYSKRFVSEKN---DKLLKQ 121 Query: 125 IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184 I + + + + I + +A G +DP GV + EVK +++++ + Sbjct: 122 IYENIKMVKNKF--NIIGIGMAFPGYIDPENGVVIRSHNIDISN-FEVKKVMKKEFNLPA 178 Query: 185 MVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVN 244 VD++ +M+A N+ +E+DFCVIN+ GIG V N +I RG +G++GH VN Sbjct: 179 YVDHNTIMMARNLISNNSHKEKDFCVINIGPGIGVGIVSNGKILRGYKNAAGELGHVTVN 238 Query: 245 PDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPW 304 P+G C+CG+ GCLET +S A+ + KL + + G+ Sbjct: 239 PEGRKCNCGKNGCLETESSSKAIVRNYEEISGKNLECEGSCESKL----VYELAKKGDEN 294 Query: 305 ITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGP 364 +R+ +G+ + +NILN ++++ G E + + +++ Sbjct: 295 AIKAFERAGKYLGIGIATLVNILNPEKVYIAGGVSNGWEFL-----KDSTEQSYNQHIFY 349 Query: 365 SVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 + K I + G E +R+ Sbjct: 350 ANKDVTIEVSSIGEYITACGAATYAFEKYVRE 381 >UniRef50_B0K1L9 ROK family protein n=9 Tax=Thermoanaerobacterales RepID=B0K1L9_THEPX Length = 400 Score = 300 bits (770), Expect = 4e-80, Method: Composition-based stats. Identities = 73/399 (18%), Positives = 155/399 (38%), Gaps = 12/399 (3%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + ++ NK ++L + ++ +++ +A + ++ VS ++ EL +E V Sbjct: 2 ITADQLLVKQINKSIVLNTIRKKGNISRADIAHITGLNKSTVSFLVDELINEGFVREEGP 61 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 + G I + +++ I + + + E + + QA++ Sbjct: 62 GASKGGRKPIILSINNNAGCIIGIDLDVNYILIVLTDLMANVIWEKKVDIKIGESQQAII 121 Query: 123 SEIEKCWHRHRKLWPD---HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + + P+ + + + + G VD G P W V +K ++E K Sbjct: 122 ERLIELIDEAILNAPNTIRGILGIGIGVPGIVDYKKGSILMAPNLKWQD-VPLKEIIENK 180 Query: 180 LGIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 I+V +DN+ + A+ EKW + +F ++ GIG+ +IN ++YRG++ +G++ Sbjct: 181 FKIKVHIDNEANVGAIGEKWFGTGIKYNNFVYVSAGIGIGTGIIINGELYRGTVGLAGEM 240 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEK---LTTAQLI 295 GH +N C CG GC E AS AL L ++ + L+ +I Sbjct: 241 GHMTINIHDHQCSCGNTGCWENYASEKALFDYIHTQLIMGKSDNYINKDNFNTLSALDII 300 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF 355 Q G + +G+ + N +N N + + G+ L+ ++++ Sbjct: 301 NYAQKGSEIAVEALKEIGRKLGVGIVNVINTFNPELVIIGNTLSLAGDLILDEVLKEVEK 360 Query: 356 NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + +I +L +G L + Sbjct: 361 ----KCLVYRYYKVKIKTSKLQFHAGAIGAVSLVISELF 395 >UniRef50_C5D498 ROK family protein n=8 Tax=Geobacillus RepID=C5D498_GEOSW Length = 397 Score = 300 bits (769), Expect = 5e-80, Method: Composition-based stats. Identities = 72/398 (18%), Positives = 155/398 (38%), Gaps = 18/398 (4%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M N ++ NK ++L+L+ + +++ +A++ ++ VS ++ EL SE V Sbjct: 1 MVRTGNIGLVKKINKQIVLKLIREKNNISRAEIAKITGLNKATVSALVDELISEHFVSES 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGE----FEYLQIDAP 116 T G + + + I + + E F + Sbjct: 61 GIGVSTGGRRPLMLRFNEAAGSLIGIELGVNYIYAVLTDLNAEIIWEKMCPFRANEKQET 120 Query: 117 TPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 + +++ I + R P + + + + G VD G+ P W V + +L Sbjct: 121 IIEKMIAMIHEAI-RQAPTTPYGIMGIGIGVPGIVDAEEGLVVFAPNLHW-DHVSLSSIL 178 Query: 177 EEKL-GIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYG 234 +++ ++++N+ + AL EKW +E +F ++ GIG+ +I+ Q+YRG Sbjct: 179 QKQWPNYPIIIENEAKLAALGEKWFGAGKEFANFVYVSAGIGIGAGVIIHNQLYRGIDGI 238 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQL 294 +G+IGH +++ G C CG GC E AS ++++ + E + ++ Sbjct: 239 AGEIGHHVIDVHGFRCSCGNNGCWEMYASEKYIQRRLEQEHYHSML------EGFSVEKV 292 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTG 354 A +SG+ + + + +G+ + + + N + + G+ L + Sbjct: 293 RALAESGDKQMAQILAEVGHYLGIGILHIIYAYNPEAVIVGSTIGKAGKWVLEPAREEVE 352 Query: 355 FNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEA 392 ++ I QL +G +E Sbjct: 353 KRILVKNGNGPF----IIPSQLLEKSCAIGAVASVLEK 386 >UniRef50_Q7MLY6 Transcriptional regulator n=62 Tax=Gammaproteobacteria RepID=Q7MLY6_VIBVY Length = 435 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 70/393 (17%), Positives = 165/393 (41%), Gaps = 11/393 (2%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M + I+ N + +L+ + ++ L++ ++++ +++ I +EL V Sbjct: 33 MAQPGHIDHIKQVNAGRVYKLIDLKGPISRIDLSKESELAPASITKITRELIEAHLVHET 92 Query: 61 DDESQ-TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFE---YLQIDAP 116 + +RG + + G L + + + + + + + + Sbjct: 93 TVQEAISRGRPAVGLQVNNAGWQFLSMRLGRGYLTIALHELGGEVLIDTKIDIHERDQDD 152 Query: 117 TPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 LL EIE+ + + D ++A+ + G V+ G+ MP + + + Sbjct: 153 VLARLLHEIEEFFQTYADQL-DRVTSIAITLPGLVNSEQGIVLQMPHYNVEN-LALGPEI 210 Query: 177 EEKLGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGS 235 + G+ V + ND ALAEK +SQ + +I++ +G+G+ +++ ++ +G Sbjct: 211 YKATGLPVFIANDTRAWALAEKLFGHSQGNENSVLISIHHGLGAGIILDGRVLQGRHGNI 270 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLI 295 G++GH ++P G +C CG GCLETVAS A++++ + + S + E +T + Sbjct: 271 GELGHIQIDPQGKLCHCGNRGCLETVASSKAIREEVMERIANGESSILEELEDVTIESIC 330 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF 355 A +G+ +++ +G ++ +N+ N ++ + G E I R Sbjct: 331 EAAANGDALAVDVIEKLGRYLGSAIAIVINLFNPEKVLIGGVINQAKEVLYPAIRRCIE- 389 Query: 356 NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYL 388 ++ + ++ + + + G + Sbjct: 390 ---EQSLPVYHQDLELVESRFYKQATMPGAALI 419 >UniRef50_C6CXN7 ROK family protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXN7_PAESJ Length = 387 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 84/396 (21%), Positives = 167/396 (42%), Gaps = 23/396 (5%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + I+ N+ +IL+ + ++ +++ ++++ ++ VS + +L E+ V+ + Sbjct: 2 ITGDASYIKKMNRSLILKEILKEGMLSRADVSKVTALTRATVSGQVADLLDEELVIETEI 61 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 E G I E + + +++ I +++ S + +++ + +L Sbjct: 62 EYNQVGRKPIMLSINAEAGYAIGIDLEYDQISFAISDLKGSLV-LTDTIKLQSHAYADIL 120 Query: 123 SEI---EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 S + K + I + +AIHG V V +P W V +K LE Sbjct: 121 SLLTGQIKHYQERFAASRYGIIGIVIAIHGLVSTDE-VIHYIPSFGWHD-VPLKSDLENA 178 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 LG++V ++N+ + A AE+ + + D + + GIG +IN +RG +G+IG Sbjct: 179 LGLQVKLENNANLSAFAERVFFHHETDDLISVTLYSGIGMGMMINHSFFRGQDGFAGEIG 238 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 H IV P G+ C+CG GC E AS +++ + R +T AQ+ + Sbjct: 239 HMIVVPGGLPCNCGNKGCWEKYASETSVFQLLRAKKPDA---------DITYAQIGNWIE 289 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 + EP T +++ + + L N +NI N + L + L I ++ N Sbjct: 290 AKEPDATELIEQFIYYLSIGLNNIINIYNPEVVVLDSELLRIYPDSLQHI--ESNLNSRV 347 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 +I + + VLG + ++ LR Sbjct: 348 SHYR------EIKISTIGKKSCVLGACAIAIQNFLR 377 >UniRef50_A9B0W0 ROK family protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B0W0_HERA2 Length = 386 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 93/375 (24%), Positives = 166/375 (44%), Gaps = 18/375 (4%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 + +Q + HN ++ + +Y ++ +ARL ++ VS+ + L E+ V + Sbjct: 9 SREQSKLHNYRLVFKAIYDGGAISRVDVARLTNLTPTTVSSNVAILLEEELVQEVGLAPS 68 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEI 125 G + + +G + L+V + + N +G Q A +L ++ Sbjct: 69 GGGKPATLLSVLDDGRHLIGLDVAGHELRGTIINL----RGAIRQRQTLALNGGNVLEQL 124 Query: 126 EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVM 185 + + + + + G ++ GV Q W + ++ LL ++ G+ V Sbjct: 125 YQLIDQLLANTHSPVLGIGIGAPGVINTTAGVVQQAVNLGWHN-LALRDLLGKRYGLPVY 183 Query: 186 VDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVN 244 + ND + A+AE + + + VINV GIG+ IN +I G +G+G+IGH +V Sbjct: 184 LANDSHVTAIAEHTFGSQRNAANLVVINVGRGIGAGIFINGRIVGGDAWGAGEIGHVVVQ 243 Query: 245 PDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPW 304 P G +C CG YGCLETVAS SAL + +TQ + T A++ AA + +P Sbjct: 244 PHGTLCRCGHYGCLETVASTSALLTKL--------DATQPQSQPWTIAEVQAALAANDPT 295 Query: 305 ITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGP 364 + + VD +A +G+++ N + +LN I L G G + L + R + Sbjct: 296 VRALVDEAAYYLGIAIANVVGLLNAQSIILAGSLAQLGNDLLQPLRRSLAQHALQ----T 351 Query: 365 SVKATQIGFGQLSRA 379 V AT + L Sbjct: 352 LVAATDVQVSTLGSD 366 >UniRef50_Q44406 Xylose repressor n=4 Tax=Clostridia RepID=XYLR_ANATD Length = 399 Score = 298 bits (764), Expect = 2e-79, Method: Composition-based stats. Identities = 82/397 (20%), Positives = 166/397 (41%), Gaps = 12/397 (3%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N+ ++ NK ++L+ + K +++ +++L ++ VSN+ EL E VV Sbjct: 3 NHTLLKQINKLLVLKTILDNKIISRTKISKLVDLNKATVSNLTDELIKEGYVVEKGYGKS 62 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEI 125 G + + + +++ I ++N E + LL + Sbjct: 63 KGGRRPVLLQVNKDVGSIIGIDLGVDYIHIILSNFVGEVIFEEYANMKIGEDKEKLLRLL 122 Query: 126 EKCWHRHRKLW---PDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 + K P + + + + G ++ +G P W V ++ ++++K + Sbjct: 123 FDLIEKSVKKAPQTPKGILGIGIGVPGIIEKESGTVLLAPNLKWQN-VPLRSIVQQKFNL 181 Query: 183 RVMVDNDCVMLALAEKWQNN-SQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V +DN+ AL EKW + D ++V G+G+ +I+ +++RG+ +G++GHT Sbjct: 182 PVYIDNEANAGALGEKWFGEWGKVSDLIYLSVGIGLGAGIIIDNKLFRGAAGFAGEVGHT 241 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVS---TQLDPEKLTTAQLIAAW 298 +N VC CG GCLE AS AL + +K + + +++T +++I A Sbjct: 242 TINFQDDVCSCGNIGCLENFASERALLSVIKKLVKQGVEDRYISWENVDEITPSRIIQAA 301 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 + G + A +G+ + N +NI N + + ++ FGE +L + F Sbjct: 302 KEGSRVCRMAILEVAEKMGIGVANLVNIFNPEMVIIGNKASFFGELFLEKLREVINQRSF 361 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 +I +L VLG + + L Sbjct: 362 ----IAQFYNLKIEVSKLKDRAVVLGCIAMVISDMLS 394 >UniRef50_B4V8E4 ROK-family transcriptional regulator n=5 Tax=Streptomyces RepID=B4V8E4_9ACTO Length = 425 Score = 298 bits (763), Expect = 3e-79, Method: Composition-based stats. Identities = 83/399 (20%), Positives = 151/399 (37%), Gaps = 11/399 (2%) Query: 3 ACINNQQIRHHNKCVILELLYRQ-KRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 A Q IR N+ L ++ ++ +A +S V+N++ EL + Sbjct: 11 AKRTAQDIRRRNRFDALRCVFAAPGPVSRQEIAAATGLSFATVANLVAELLEAGVLREAG 70 Query: 62 DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPT-PQA 120 E G + E + ++V TS++ ++ + L+ PQ Sbjct: 71 HEDSKGGRPRARLAVNAERGALVGIDVAETSVQVELFDLALTVLRGVRLPLPQTDVRPQD 130 Query: 121 LLSEIEKCWHRHRKLWPD--HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 ++ I + + +++ G V+ GVS P W V ++ LL E Sbjct: 131 VVDAIVAGVEGLSDSAVEAPRILGAGVSVPGLVEREGGVSVFSPYWSWRD-VPLRSLLAE 189 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 +L + + +DN +AE W +E D V+ + G+G+ ++ +YRG+ +G+ Sbjct: 190 RLPMPLYLDNPLKAGTVAEMWFGAGREVDDLVVLTLRAGVGAGIAVDGALYRGATNSAGE 249 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 GHT + G C CGR GC+E S + R P+ E + ++ A Sbjct: 250 WGHTCLVRGGRACRCGRQGCVEAYVSSRGIADTVRELDAESPLLDP--DEDVVVTKVARA 307 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNP 357 G+ V R+A +G + + LN+ N + L G E ++RQT Sbjct: 308 AAEGDAVAAEAVARTARYLGEAAADLLNLFNPQTLVLGGWVA---ERLGEPLLRQTRDVI 364 Query: 358 FDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 +++A + LG +E L Sbjct: 365 AAHALPATLQALTFQRSTVPDNPVTLGAATFALEGFLDD 403 >UniRef50_B2IDS2 ROK family protein n=2 Tax=Rhizobiales RepID=B2IDS2_BEII9 Length = 428 Score = 298 bits (763), Expect = 3e-79, Method: Composition-based stats. Identities = 85/405 (20%), Positives = 163/405 (40%), Gaps = 16/405 (3%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 + + IR N+ +L+ + R + +++ + + +S VS+++ L E + DE Sbjct: 3 TGDTELIRAINRFHVLDTIRRFEPVSRAAIGKRTHLSRVTVSSLIATLLQEGLIHEESDE 62 Query: 64 ---SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEF----EYLQIDAP 116 S TRG + + P + + ++ + V N P Q+ Sbjct: 63 TTNSGTRGRPTNLLGLNPNAAYVVGAKLSMHQVFLIVTNLRADPLARLSLPLHPHQLVPD 122 Query: 117 TPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQA-PWTTPVEVKYL 175 ALL E + L L + + G +D G+S P P PV + + Sbjct: 123 AIVALLDEGVRSVVALAGLKLGQIAGLGIGLPGFIDSKAGISHWSPILAPEPKPVALADM 182 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYG 234 + +LG+ V ++ND +L LAE+W QE D F V+ ++ GIG ++ ++YRG Sbjct: 183 VRRRLGLAVTIENDANLLTLAERWFGECQENDNFVVVMMEAGIGMGLFLDGELYRGQHGM 242 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDP---EKLTT 291 + GH+ ++ G C CG+YGC+E + A+ ++A +++ D + Sbjct: 243 GTEFGHSKIDRHGPRCRCGQYGCIEAFTADYAILREAEKIIRTPAAHEGADDTAEAETRV 302 Query: 292 AQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIR 351 A ++ + G + + +GL + N +NI++ +I + G + + Sbjct: 303 ATVVRLAREGNVALRQIFATAGEILGLGIANLINIIDPAKIVISGSGTRAVDLIEPALRA 362 Query: 352 QTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 N +I F G L ++A R+ Sbjct: 363 AVAANTLA----VLQNRCEIIFHDQGDEVWARGAASLVLQALYRK 403 >UniRef50_UPI0001C31B1F ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31B1F Length = 404 Score = 297 bits (760), Expect = 7e-79, Method: Composition-based stats. Identities = 91/400 (22%), Positives = 170/400 (42%), Gaps = 23/400 (5%) Query: 1 MRAC---INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRV 57 MR + +R N+ ++++ L R +++ LAR +S VS ++ +L+++ V Sbjct: 1 MRRAAPSGSLASLRDRNRRLLVDELRRAGLISRAELARRTGLSRSTVSTLVADLQAQGLV 60 Query: 58 --VNIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEY-LQID 114 +D G + L ++ + V++ + + E ++ + Sbjct: 61 AEREVDGAGPQGGRPPVLLSLERAAGVALGIDFGKRHVRVIVSDLAHTVLADVERPMETE 120 Query: 115 APTPQ--ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEV 172 P+ + + + I + + G +D TG + P + Sbjct: 121 QSAPEGFEVAVALVHQALADAGVEQTDVIGAGMGVPGPIDISTGEVGSSAILPGWIGLRP 180 Query: 173 KYLLEEKLGIRVMVDNDCVMLALAEK-WQNNSQERDFCVINVDYGIGSSFVINEQIYRGS 231 + + +LG+ V V+ND + ALAE W +DF + V GIGS V+ Q+Y G+ Sbjct: 181 REDMSARLGLAVRVENDANLGALAELTWGAGRDTQDFVYVKVASGIGSGLVLGGQLYTGA 240 Query: 232 LYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTT 291 +G+IGH++V+ G VC CG GCLET+AS +++ R + LT Sbjct: 241 GGIAGEIGHSMVDERGAVCRCGNRGCLETIASTRQIRELLRPARGA----------DLTI 290 Query: 292 AQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIR 351 ++IA + G+ + +A AIG+ + N+LN ++ + G A G+ L+ + Sbjct: 291 EEVIAHAREGDRASRRVIGDAARAIGVVVAQVCNVLNPAKVIVGGDLSAAGDVLLDPLRD 350 Query: 352 QTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVE 391 + + G +I G L R +VLG L + Sbjct: 351 EVSRHAVPAAGG----HVEIVPGVLGRRAEVLGAAALVLR 386 >UniRef50_A8L0L3 ROK family protein n=25 Tax=Actinomycetales RepID=A8L0L3_FRASN Length = 401 Score = 295 bits (757), Expect = 2e-78, Method: Composition-based stats. Identities = 96/391 (24%), Positives = 157/391 (40%), Gaps = 22/391 (5%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 + +R N+ +L +L R+ ++ +ARL +S VSNI+ EL V + Sbjct: 23 SQSSLRAANRDRVLGVLRREGSLAQAEIARLTGLSPATVSNIVGELRESGDV--DVRPAV 80 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGE-FEYLQIDAPTPQ--ALL 122 + G + ++ + L+ + + + E + +D + A Sbjct: 81 SGGRRAVRVSLSRRSGVVIGLDFGHRHLRVAIGDLAHEVLAEDVVDIDVDHQAQEGIATA 140 Query: 123 SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 + + + + + + G +D VTG + P V + E+LG+ Sbjct: 141 GRLVDDLLGRLAVDRADVVGVGMGLPGPIDAVTGAVGSSAILPGWVGVPAAAQMSERLGL 200 Query: 183 RVMVDNDCVMLALAE-KWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V VDND + ALAE W RD + G+GS VI+ +++RG +G+IGHT Sbjct: 201 PVRVDNDANLGALAELHWGAGQGVRDLAYLKASTGVGSGLVIDGRVHRGGAGTAGEIGHT 260 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 ++ +G VC CG GCLET+ S L + R LT +I +G Sbjct: 261 TLDENGSVCRCGNRGCLETIVGTSVLLESLRTS----------HGPDLTVRGMIDRAVAG 310 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 + V + AIG + N N+LN I + G A GE L + + R Sbjct: 311 DAGCARVVSDAGRAIGNAAANLCNLLNPQVIVVGGDLAAAGETLLEPMRQ-----VVHRF 365 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEA 392 P+ T I G L +VLG L + Sbjct: 366 AVPAAVPT-IVAGVLGERAEVLGALALVLRE 395 >UniRef50_C7M5N9 ROK family protein n=21 Tax=Bacteroidetes RepID=C7M5N9_CAPOD Length = 402 Score = 295 bits (756), Expect = 2e-78, Method: Composition-based stats. Identities = 79/405 (19%), Positives = 164/405 (40%), Gaps = 25/405 (6%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 ++ I + ++ I+ + L + S+P V+ ++ EL + V++ Sbjct: 9 IKQGIRSASLKKD----IICYYINNGDDTLADLGKELNFSVPTVTKMVGELIEDGIVMDF 64 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 G + + + + ++++ + + N E + + P Sbjct: 65 GKMETPGGRRPNIYGLNQSSGYFIGVDISQKRVHIGLINFKGDLIDEQMDISFEEAHPHE 124 Query: 121 LLSEIEKCWHR---HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 + + H + D +++ + I G+V+P TG S + + + + E Sbjct: 125 RFERLCEIIEDFMSHTVVPKDKILSIGINISGRVNPQTGHSYS---FFYFDERPLTEMFE 181 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 EKLGI V +DND +A E + Q E++ +NV +G+G ++N Q+Y G SG Sbjct: 182 EKLGIDVSIDNDSRAMAYGEYIKGRVQAEKNIIYVNVGWGLGLGVIVNGQLYYGKSGFSG 241 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVST----QLDPEKLTTA 292 + GH + ++C CG+ GCLET AS SAL ++ L + S + + +++T Sbjct: 242 EFGHITAFENEILCHCGKKGCLETEASGSALYRKFLEKLHNGQSSLLTQQKENEDEITLN 301 Query: 293 QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI--- 349 +I + ++ N +G + +N+ N + + G G+ + + Sbjct: 302 DIIDVALQEDILAIELIEEVGNTLGKHVAGLINLFNPELVIIGGTLANAGDYLILPLRSA 361 Query: 350 IRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 I++ N ++D + I +L +LG L + Sbjct: 362 IKKYSLNLVNKD-------SSIKVSKLGDKAGLLGASLLARSKFI 399 >UniRef50_C9YT50 Putative ROK family transcriptional regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9YT50_STRSW Length = 429 Score = 295 bits (756), Expect = 2e-78, Method: Composition-based stats. Identities = 85/400 (21%), Positives = 161/400 (40%), Gaps = 16/400 (4%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 ++ IR N+ +L + + ++ LA +S+ V+ ++ EL + + + E Sbjct: 7 TSRDIRTANRYEVLRQIIAKSPTSRQELAAATGLSLATVATLVGELLDLRMITEVGFEDS 66 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPT-PQALLSE 124 G G + G + +++ T + ++ + L+ E P+ ++ Sbjct: 67 AGGRPRGLVAVNASGGALIGVDIAETYVHVELFDLALNVLARAEENVRPGENLPEQMVGH 126 Query: 125 ---IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + + + +++ GQVD TG+S+ P W V + LL E + Sbjct: 127 VAAAVGSVVAQAGIEGARVLGVGVSVPGQVDRATGISEYAPNWDWHD-VPLLDLLTEHIA 185 Query: 182 IRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + +DN +A+AE W ++ D ++N+ G+G+ V+ ++RG +G+ GH Sbjct: 186 YPLYLDNPLRAVAVAELWFGAARGHGDAVIVNLGTGVGAGLVLGGGLHRGVSNSAGEWGH 245 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEK--LTTAQLIAAW 298 T + DG +C CG +GC+ET + R P ST L PE T A L Sbjct: 246 TTIVLDGRLCHCGNHGCVETYVGAPGIMLNLREL---SPRSTLLHPEDQTATIAALARGV 302 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAF-GENWLNTIIRQTGFNP 357 +P V +A +G + + +N+ N + L A GE + + + Sbjct: 303 ARQDPVAVKVVRDTARYLGAGIADLVNLFNPEVVVLSSWVAAALGEPLVAEVREAVARHA 362 Query: 358 FDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 R + AT I + LG +E L+ + Sbjct: 363 LPR----PMAATDIVLSLIPTDPACLGAATFALEGALQSV 398 >UniRef50_Q1AZ04 ROK domain containing protein n=2 Tax=Actinobacteria (class) RepID=Q1AZ04_RUBXD Length = 402 Score = 294 bits (752), Expect = 5e-78, Method: Composition-based stats. Identities = 85/383 (22%), Positives = 139/383 (36%), Gaps = 19/383 (4%) Query: 18 ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIA 77 I L+ + ++ LA + ++ VS ++ L VV + T G Sbjct: 12 IFGLIRSGRARTRAELAAVTGLTRATVSQRVEVLMEAGLVVETKEGVSTGGRPPMVLGFN 71 Query: 78 PEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWH---RHRK 134 + L ++ T VA+ P E A P A+L ++ + Sbjct: 72 KDAGVVLAADLGATHCRLAVADLGGRPLVELPADLDIAQGPDAVLGWVQDRFEELLEEAG 131 Query: 135 LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL-GIRVMVDNDCVML 193 + + + + G VD G + + P P V + E+ G+ V+VDND ++ Sbjct: 132 RSREEVWGIGVGVPGPVDFARGQAVSPPIMPGWDRVPIPERFRERFGGVPVLVDNDVNIM 191 Query: 194 ALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV-NPDGVVCDC 252 AL E N S + V GIG V +I+RG +G IGH + + VC C Sbjct: 192 ALGEHRVNWSDVEHLLFVKVATGIGCGIVAGGRIHRGERGAAGDIGHIRISGHEETVCRC 251 Query: 253 GRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRS 312 G C+E VA AL KQ + L + ++ ++G P V + Sbjct: 252 GNVACVEAVAGGWALAKQL----------SGLGYPATGSRDVVGLVRAGNPAAARLVRTA 301 Query: 313 ANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIG 372 IG L + +N N I + G E I + R + + QI Sbjct: 302 GELIGEVLASLVNFFNPAVIIIGGDLAHAHEQLFAGIRS----VVYQRSLPLATRHLQIV 357 Query: 373 FGQLSRAQQVLGIGYLYVEAQLR 395 +L + G + +E LR Sbjct: 358 PSELDDRAGIHGAAAMVIEHVLR 380 >UniRef50_P0AF22 N-acetylglucosamine repressor n=95 Tax=Gammaproteobacteria RepID=NAGC_ECO57 Length = 406 Score = 293 bits (751), Expect = 6e-78, Method: Composition-based stats. Identities = 81/396 (20%), Positives = 164/396 (41%), Gaps = 12/396 (3%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N ++ N + L+ + ++ +A +Q++ +V+ I ++L + +D ++ Sbjct: 11 NVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQAS 70 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEY---LQIDAPTPQALL 122 T G + + + + + + + + E Y + ALL Sbjct: 71 TGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHALL 130 Query: 123 SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 + I + +++ + I +++ + G VDP +G MP + LEE+ + Sbjct: 131 NAIAQFIDSYQRKLRE-LIAISVILPGLVDPDSGKIHYMPHIQVENW-GLVEALEERFKV 188 Query: 183 RVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V +D LALAE + SQ+ D ++ V G G+ + N +I+ G G+IGH Sbjct: 189 TCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGHI 248 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 V P G C CG +GCLET+A+ +A++++ LK Q +++ + T + A G Sbjct: 249 QVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLK-QGYQSRVPLDDCTIKTICKAANKG 307 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 + + ++ +G ++ +N+ N +I + G + L I ++ N + Sbjct: 308 DSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAI--ESCIN--TQA 363 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 + +L +G L A L I Sbjct: 364 LKAFRTNLPVVRSELDHRSA-IGAFALVKRAMLNGI 398 >UniRef50_A8VRA6 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VRA6_9BACI Length = 387 Score = 291 bits (745), Expect = 3e-77, Method: Composition-based stats. Identities = 79/393 (20%), Positives = 154/393 (39%), Gaps = 19/393 (4%) Query: 7 NQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQT 66 +++ NK +IL+ +Y+ + +++ LA++ ++ VSN++ EL E + + + Sbjct: 5 QLEVKQQNKKLILKTVYQLEPISRADLAKVLSLTKATVSNLVDELVQEHYLEQVGLGKSS 64 Query: 67 RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIE 126 G I + +T+ +++ I + + + D + + IE Sbjct: 65 GGRRPLMLKINEKAGYTISVDIGVNYIRSILTDLKGGIMKKA-VETTDTNVYEDTMRYIE 123 Query: 127 KCWHRHRKLWPD---HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIR 183 + D + + + G VD G + P W +++ E + Sbjct: 124 TMVNNLINDMDDAPFGLVGIGFGVPGLVDSD-GTVISTPNLDWQES-DIRKRFEAAFDVH 181 Query: 184 VMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 V+V+N+ A EK D F I+ GIG + + +YRG +G++GHTI Sbjct: 182 VIVENEANAGAFGEKSFGEGISSDHFIYISGGIGIGVGLIFDGVLYRGRNGFTGELGHTI 241 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 + DG+ C CG+ GC E AS + K+ + +LT + + + + Sbjct: 242 IQMDGLTCSCGKKGCWERYASELYILKEYEKL-------KGMPWHQLTLEEAVTEAAA-D 293 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDE 362 + + R+A + L N +N N +I + R E ++ +I + Sbjct: 294 EDVRAIFHRAARHFAIGLTNIINSFNPEKIIVGNRLTQA-EQYMLPVIEEVIAET---AI 349 Query: 363 GPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 P K I F + VLG+ +E Sbjct: 350 SPIAKGVGIHFNNTDQLATVLGLSAFSIERFFD 382 >UniRef50_A8F6K2 ROK family protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F6K2_THELT Length = 403 Score = 290 bits (744), Expect = 5e-77, Method: Composition-based stats. Identities = 81/385 (21%), Positives = 165/385 (42%), Gaps = 10/385 (2%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 + ++ HN+ ++L + + +++T+++ +SI +++NI L + Sbjct: 3 LTRDILKDHNEKIVLRTIRQMGEVSRTTISKKTGLSIASITNITSRLLEANLIKENRYGK 62 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 G I + W + + V + V + +P E + + ++ + A++ + Sbjct: 63 SKGGRRPVLLGINEKHSWAIGVKVGYLYLYFVVTDLLGTPVLE-QKIPLNTASYNAVVEK 121 Query: 125 IEKCWHRHRKLWP---DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 I + K+ + + +A+ G VD G+ ++ W V + +LEE++ Sbjct: 122 IADFVNTIVKIPEYVDRKFLGIGVAVSGSVDSEHGIVKSSYILEWGN-VPIGPVLEERIK 180 Query: 182 IRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 V+V ND A+A + ++ I + G+G + ++ ++Y G G+G+IGH Sbjct: 181 APVLVYNDVDSFAVAHYTIGRAKKYKNCIFITLGSGVGGAMILGGKLYTG-RGGAGEIGH 239 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVW--LKSQPVSTQLDPEKLTTAQLIAAW 298 V DG C CG YGCLE S +AL + + ++S + L E + A Sbjct: 240 MTVICDGKKCSCGSYGCLEAEISFNALVDRIKKKTNIESLKNRSCLTTEDEAIHYIHKAL 299 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 Q + D + +G+++ N +NI + + + G + F + +L I N F Sbjct: 300 QIDREAVIEAFDEISVLLGVAIKNMINIFAPDYVLIGGEALEFRDLFLKKAILIARENSF 359 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVL 383 D G V G+++ Q V+ Sbjct: 360 G-DLGDDVVIDIDDMGEVAWVQGVI 383 >UniRef50_Q64GL6 Rep n=2 Tax=Actinobacteria (class) RepID=Q64GL6_9ACTN Length = 389 Score = 289 bits (741), Expect = 9e-77, Method: Composition-based stats. Identities = 75/395 (18%), Positives = 146/395 (36%), Gaps = 21/395 (5%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + +R N+ I+ + ++ + LA + +S VSNI++EL + Sbjct: 2 TPGSQTSLREANRARIVSAVQQRGSLTQVELAGVTGLSPATVSNIVKELTGAGVLH--TS 59 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 + G + +A ++ S+ VA+ + A L Sbjct: 60 PTSRSGRRAQQVTLARNLGLVGGIHFGSRSLRVAVADVAHRIVADQRMPLPPDHRADAGL 119 Query: 123 SEIEKCWHRHRKLWPD---HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + + + + + VD TG T+ + V +LE + Sbjct: 120 ERAALLLTEMVESVDSSLQEVLAVGVGVPAPVDVRTGQISTIGVLRGWDGICVPEVLERR 179 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 LG+ V VDN+ + ALAE ++ R + + +G+G V+N +++ G +G+I Sbjct: 180 LGLPVYVDNEANLGALAEVRFGAARGRQHVVYLRISHGVGGGIVLNGEVFHGRSGTAGEI 239 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH ++ +G +C CG GCLET L LT +IA Sbjct: 240 GHVTIDDNGPICRCGNRGCLETFVGAPVLLSMLTASHG-----------HLTLPDVIARA 288 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 Q G+P + + +G++ + N+ + + + GR G ++ + Sbjct: 289 QQGDPGCRRVISDAGRYLGVAAASVCNLFDPELVVVGGRLAEAGPILMDPLRTVLAQRTV 348 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 GP ++ +L A +V G + ++ Sbjct: 349 PSTAGP----VEVVASELGSAAEVRGALVVALDHA 379 >UniRef50_A9B0H5 ROK family protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B0H5_HERA2 Length = 414 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 75/386 (19%), Positives = 163/386 (42%), Gaps = 27/386 (6%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 + +R N+ ++L+L+ R+ R +++ +A+ ++S VS+I+ +L V Sbjct: 8 TADLSLMRELNRALVLQLIRREGRISRADIAKHTKLSRSTVSSIINDLIDASLVTETGIG 67 Query: 64 SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANAC--LSPKGEFEYLQIDAPTP-QA 120 + G + ++ + L+V+ ++ + + + + + + D PT Sbjct: 68 TSKGGRRPIILEFNYQANYIIGLDVSRNAVSAVITDLNARICSRRQISFNVNDGPTVGMP 127 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 L+ ++ + + + + G +D G + P P V ++ L + Sbjct: 128 LIKQLISTMLTESPVGRGRISAIGVGVPGPLDFRNGRTIAPPVMPGWDNVPIREELSQTF 187 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDY-GIGSSFVINEQIYRGSLYGSGQI 238 + V +DND + A+AE Q ++ + + GIG+ +I+ ++RGS+ +G++ Sbjct: 188 RLPVSIDNDANLAAMAEYRWGAGQGAQNMVYLYMSSAGIGAGLIIDSHLFRGSIGSAGEV 247 Query: 239 GHTIVNPD-----GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQ 293 GHT ++ + G + G LE +AS + + AR +L Sbjct: 248 GHTTLSVENDESFGPI----NAGSLEALASQITVLRLARE--------QKLISADDDVHT 295 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT 353 L+ +S P I + + R+A+ +G+++ + +NI N +++ + G + TI Sbjct: 296 LVRKAES-SPEIQAILRRTAHYLGVAIASIINIFNPDRVVIGGVIPETSPLLIETIRATV 354 Query: 354 GFNPFDRDEGPSVKATQIGFGQLSRA 379 R +V T I G L R Sbjct: 355 AR----RALSIAVNNTSIVPGALGRN 376 >UniRef50_A6TUP6 ROK family protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUP6_ALKMQ Length = 392 Score = 289 bits (740), Expect = 1e-76, Method: Composition-based stats. Identities = 68/396 (17%), Positives = 159/396 (40%), Gaps = 19/396 (4%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 + QI+ N+ I+ ++ ++ K +A ++SIP ++ + +L E V Sbjct: 6 TFSQDQIKEINRSNIINMIKQKYEITKHEIAVALKLSIPTITTNINQLIEEGLVEEAGVG 65 Query: 64 SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLS 123 + T G + +++ ++V+P + + + + E + + + + +L Sbjct: 66 NSTGGRKPMILKLVENARFSVGVDVSPDKVRILLIDLNNTIIDEASFDYVKDLSFKGVLD 125 Query: 124 EIEKCWHR---HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 E++ R + + + + +++ G VD + + P ++ L Sbjct: 126 EVKTEIERFMTQNNISKNKILGVGISLPGLVDEDRLILENAPNIGVRDFNF--QEFQDSL 183 Query: 181 GIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 +RV ++N+ + A AEK + R+ +++ G+G+ ++N+ IY+ S +G+ G Sbjct: 184 QLRVFIENEANIAAYAEKEIGKTVNMRNVVYVSITEGVGTGIIVNQHIYKSSNKKAGEFG 243 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 H ++ + C+CGR GC E AS AL + + T ++ + Sbjct: 244 HMRISDEPRPCNCGRTGCWELYASKKALSRYYEESTGLKVS---------TLDEIFSEES 294 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 P + + R + + + + N + LN + + G + + L I + Sbjct: 295 FNMPSVKEAIGRYIDCLFIGIENIILGLNPEFVIIGGELGKYEKEMLTLINGRNNM---- 350 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + + T++ F L ++G L +E Sbjct: 351 KSSFVEYEGTKVVFSALKDKGSLIGAALLPLEDLFN 386 >UniRef50_D2PV61 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PV61_9ACTO Length = 436 Score = 289 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 88/403 (21%), Positives = 151/403 (37%), Gaps = 11/403 (2%) Query: 1 MRACINNQQIRHHNKCVILELLYR-QKRANKSTLARLAQISIPAVSNILQELESEKRVVN 59 +R N ++ N V+L+ + R ++R ++ LA +S A+SNI + L V Sbjct: 10 VRRGTNLDRVGGFNDTVVLDAIRRAEQRLSRVELAAATGLSGQAISNITRRLLDAGLVRE 69 Query: 60 IDDESQTR-GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP 118 + G + P G + + +++ P + + + A P Sbjct: 70 AGRQKSAGLGKPRTLLELEPTGQYAVGVHLDPAVVTVVLLDLTGQVIARRRAQTPAADGP 129 Query: 119 QALLSEIEKCWH---RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 L++ I + + + +A G +D GV P V ++ Sbjct: 130 DVLIAGIAATVEDVIAEAGVPRQRVVGVGIAAPGPIDVDRGVVVDPPNLTAWHLVPLRDA 189 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYG 234 L ++ G+ V++D D A AEKW R F + GIG+ VI +++ RGS Sbjct: 190 LRDRTGLPVLLDKDVTAAASAEKWAGGPNGRGSFVFFYLGTGIGAGLVIGDEVVRGSSSN 249 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTA-- 292 G+IGH IV+P+G +C CGR GC+ + L +QA D + A Sbjct: 250 VGEIGHVIVDPEGPLCFCGRRGCVGESSRPRYLVQQAVDAGVVARGIDLDDRHAVDVAFT 309 Query: 293 QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQ 352 L A G V A I + + N+L++ ++ G + IR+ Sbjct: 310 ALCTAATGGPGAAREIVTALAERIAKVVEDIANLLDLERVVFGGPHWDRLAPFFGDAIRE 369 Query: 353 TGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 T F SV + L +G L ++ Sbjct: 370 TLEERF---LVRSVHPFTVTGTALGADVGAVGAASLVLDHTFS 409 >UniRef50_C5RGV2 ROK family protein n=2 Tax=Clostridium RepID=C5RGV2_CLOCL Length = 393 Score = 289 bits (739), Expect = 2e-76, Method: Composition-based stats. Identities = 72/391 (18%), Positives = 151/391 (38%), Gaps = 23/391 (5%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 ++ + I+ N+ +L LLYR + K +A+ ISIP V + EL V Sbjct: 10 LDQETIKKINQNNVLYLLYRHDQLTKHDIAKKLGISIPTVVTNINELIELGFVEEAGVGK 69 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFE-YLQIDAPTPQALLS 123 T G P+ +++ + +T + + N E + + + ++ Sbjct: 70 STGGRKPVIVKFLPDSRYSMGVVITKDYVRMVLTNLHFEIIKEVSISIDEELQSIDYIIE 129 Query: 124 EIEKC---WHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 +++ + + + + ++ G V+ T + + ++ K Sbjct: 130 AVKEFQKNVCEELSIDENKILGIGFSLPGTVNEKTLILENAINLGIKN-IDFKNY---DF 185 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 V ++N+ A AE + + +++ GIG+ V N +Y+G+ +G+ G Sbjct: 186 NCPVYIENEANASAYAEYFVYPDKSNSKLIFVSITEGIGTGIVFNSLLYKGANKRAGEWG 245 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 H + DG C CG+ GC E AS AL K + ++ +++ Sbjct: 246 HMTIVKDGKSCACGKNGCWEVYASSKALLKTY---------NKDTGLKRRNISEIFMELD 296 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 + VD + + N + I++ ++I + G F E+++ + + + P Sbjct: 297 E-DYKTQKVVDEYLEYLAEGIKNIILIMDPDKIVIGGEIA-FYEDYIKEALNEKVYKP-- 352 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYV 390 + + K +I F +L V+G L V Sbjct: 353 -NAFFTAKDCKIEFTKLKANASVIGAALLPV 382 >UniRef50_D2SD76 ROK family protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SD76_9ACTO Length = 390 Score = 288 bits (737), Expect = 3e-76, Method: Composition-based stats. Identities = 82/385 (21%), Positives = 146/385 (37%), Gaps = 22/385 (5%) Query: 18 ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIA 77 +L + + +++ L L S VS + +L + + T G Sbjct: 13 LLRHVRTGRARSRAELVALTGASRNTVSARVDQLIAANLLAEGGRGWSTGGRPPTLLQFN 72 Query: 78 PEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEK---CWHRHRK 134 L +++ TS++ V + + A P+ +L+E+++ Sbjct: 73 SRAGCVLAVDLGVTSVDVAVTDLSAQVLATVGHPIDIADGPRPVLAEVDRLAQLVLADAG 132 Query: 135 LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLA 194 L P + + + G V+ +G P P + + V VDND ++A Sbjct: 133 LEPADVCAVGIGVPGPVEHSSGRPSHPPIMPGWHDFPIPSAFG-RYECPVYVDNDVNVMA 191 Query: 195 LAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV-NPDGVV--CD 251 L E +D V+ V GIG +++ ++YRG+ +G IGH V PDG + C Sbjct: 192 LGEM-GAAGSVQDVLVVKVGTGIGCGVIVDGRVYRGAQGSAGDIGHIHVTTPDGRLVTCR 250 Query: 252 CGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDR 311 CG+ CLE +A AL + A PVS TT +++ G+ V Sbjct: 251 CGQENCLEALAGGGALLRDA--VAAGLPVS--------TTREVVERAAQGDGAAIELVRE 300 Query: 312 SANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQI 371 + IG L +N N ++I + G G L I + + R + +A +I Sbjct: 301 AGRTIGTVLAALVNFFNPHRIVVTGGVAQAGVPLLAGIRE----SVYRRSMPLAARALEI 356 Query: 372 GFGQLSRAQQVLGIGYLYVEAQLRQ 396 + +G + +E L + Sbjct: 357 TVSEAPELSGRVGAALMAIEGFLDE 381 >UniRef50_C6Y2I3 ROK family protein n=4 Tax=Sphingobacteriales RepID=C6Y2I3_PEDHD Length = 408 Score = 287 bits (736), Expect = 4e-76, Method: Composition-based stats. Identities = 77/389 (19%), Positives = 154/389 (39%), Gaps = 15/389 (3%) Query: 15 KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTW 74 K ++ A + L + +S P ++N+L +L ++ + + T G + Sbjct: 25 KKYVISYFANIGNATIADLCKELNLSAPKITNLLSDLIADGLIKDYGKVESTGGRKPNLY 84 Query: 75 LIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHR--- 131 + P+ + + +++ I ++N + E + + L + K + Sbjct: 85 GLVPDSAFFIGVDIKQNHINIGLSNLQKNLIRITEKIPYHLDNNKESLEALCKLINDFIG 144 Query: 132 HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCV 191 + + + L + + G+++ TG S + + + ++E K+GIRV ++ND Sbjct: 145 ELTIPKEKLLGLGINLSGRINYATGYSYS---FFYFNEEPLSKIIESKIGIRVFLENDSK 201 Query: 192 MLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVC 250 +A E + E++ +N+D+GIG ++N Q+Y G SG+ GH + + ++C Sbjct: 202 SMAYGEFSAGVVEAEKNVLFLNLDHGIGLGILVNGQLYYGKSGYSGEFGHIPMFDNEIIC 261 Query: 251 DCGRYGCLETVASLSALKKQARVWLKSQPVS----TQLDPEKLTTAQLIAAWQSGEPWIT 306 CG+ GCLET AS AL + + L S D E L +I A + Sbjct: 262 RCGKKGCLETEASGWALTRMFKERLSEGSSSILSQNNTDTEDLKMEDIINAAIHDDVLAI 321 Query: 307 SWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSV 366 + + + +G + +N+ N + L G A E I Sbjct: 322 ELIAKIGDNLGRGIALLINLFNPELVILGGSLAATEEYIRLPIKSAINKYSLS----LVN 377 Query: 367 KATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + T + +L ++G L L Sbjct: 378 QDTNLKMSKLGERAGIIGACLLVRNRLLS 406 >UniRef50_D2ASC3 Transcriptional repressor of the xylose operon n=2 Tax=Streptosporangium roseum DSM 43021 RepID=D2ASC3_STRRD Length = 397 Score = 287 bits (736), Expect = 4e-76, Method: Composition-based stats. Identities = 85/393 (21%), Positives = 154/393 (39%), Gaps = 25/393 (6%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 + +R N+ V+L LY + ++ L+ L +S +VSN+ +L ++ +V Sbjct: 10 RDLRRGNRAVLLRTLYFEGPTSRHELSGLTGLSAASVSNVTGDLIADGIIVEAGLVESDG 69 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEY-LQIDAPTPQALLSEI- 125 G + PE + + ++V T + ++ + ++ + + +Y L+ ++ I Sbjct: 70 GRPRVLLRVDPEFGYAIGVDVGETHVRVELFDLDMNERAKADYPLRPGRHDVDLVVRHIL 129 Query: 126 --EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIR 183 + P + + + + G V+ W V + LL + Sbjct: 130 SGIDAVLAAGGVDPARVLGVGIGVPGIVESGPEALIHAQTFGW-DAVPLGTLLRAGTSLP 188 Query: 184 VMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 + VDN + AE W + R V + G G+S + + YRG+ +G+ GHT Sbjct: 189 LYVDNGAKTMGQAELWFGAGRGTRHTIVALIGSGAGASIITDGIAYRGANSSAGEWGHTK 248 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 + G C CG GCLE ++ +A + + A L +SG Sbjct: 249 IMMGGRACRCGGRGCLEAYIGAESILDRAGLSAEIADEQ----------AVLAELVRSGG 298 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGR-SCAFGENWLNTIIRQTGFNPFDRD 361 P +D +A+ +G L N +N+ N +I + G G + L I R N + Sbjct: 299 P----VIDETADYLGAGLANLINLFNPERIVIGGWAGLLLGRHHLTRIRRSAADNSLTQP 354 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 G + I G+L LG L VE L Sbjct: 355 YGTA----SIVLGRLGPDAVALGAATLVVEEFL 383 >UniRef50_Q47NL3 Putative transcriptional repressor protein n=1 Tax=Thermobifida fusca YX RepID=Q47NL3_THEFY Length = 389 Score = 287 bits (735), Expect = 5e-76, Method: Composition-based stats. Identities = 81/396 (20%), Positives = 164/396 (41%), Gaps = 18/396 (4%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + +R N+ ++ L R ++ +AR +S +VSNI+++L + V Sbjct: 8 TPGSQAALRQANRERVIAALRRGGTLTQAEIARATGLSAASVSNIVRDLRAMGVV--SVR 65 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 E+ + G + + + ++ T + + + N E + P + Sbjct: 66 ETSSNGRRARAVTLQRPPGVLVAIDFTHSRLTVALGNTDGRVLQEESIAYDVSEDPVRGV 125 Query: 123 SE---IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + + ++ + +A AI G VDP TG+ + P L+E+ Sbjct: 126 RRAVWLTETLLTQARVDRSMVLGVAAAIPGPVDPATGLIGDITSMPHWAGFNPGAELQER 185 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 LG+ V VDND + ALAE + ++ + V +G+G+ ++ +++RG +G+I Sbjct: 186 LGLPVSVDNDANLCALAELTEGAARGLEHVVYVKVAHGVGAGVILGGRLFRGMNGNAGEI 245 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH ++ G VC CG GCLET+ L + + ++ +D L+ A Sbjct: 246 GHIGLDERGQVCRCGNRGCLETLVGTPYLLDMLPQQGRVKHGASLVD--------LLEAA 297 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 Q G+P + + A+G + +N++N + + G GE L+ + R Sbjct: 298 QEGDPGCRRIIAEAGAALGRGVAVVVNMVNPQMVIVGGEIAEAGELLLDPMRRAMELGAL 357 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 G ++ ++ G+L + G + +++ Sbjct: 358 ----GNALTGLRLVTGELGERAALRGALQVVLDSTF 389 >UniRef50_C5CNA8 ROK family protein n=1 Tax=Variovorax paradoxus S110 RepID=C5CNA8_VARPS Length = 389 Score = 286 bits (732), Expect = 1e-75, Method: Composition-based stats. Identities = 75/386 (19%), Positives = 155/386 (40%), Gaps = 11/386 (2%) Query: 17 VILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLI 76 +LE + ++ +A S + ++ L + + + + G + + Sbjct: 2 RLLETTFWSAGGSRHAMAEQLGFSKSKANALIAGLVEQGLLAEAGLQRSSGGRRAENLQL 61 Query: 77 APEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHR--- 133 + +++ TS++ V LS + + P +L+ + Sbjct: 62 HAGLGVLVGIDIGATSLDVAVLRPDLSVLAQHDEPADVREGPAVVLARVRVLMRELLARC 121 Query: 134 KLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVML 193 P + + + + + G V+ G P P ++ L E V VDND ++ Sbjct: 122 GHGPKNVLGIGIGVPGPVNFEIGQLVNPPLMPAWDSFSIRDYLREDYAAPVFVDNDVNLM 181 Query: 194 ALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCG 253 AL E W+ +F VI + GIG V + ++YRG+ +G +GH V+ DG C CG Sbjct: 182 ALGELWRLKRSLNNFLVIKIGTGIGCGIVCHGEVYRGAAGSAGDVGHICVDQDGPRCHCG 241 Query: 254 RYGCLETVASLSALKKQARVWLKSQPVSTQLD----PEKLTTAQLIAAWQSGEPWITSWV 309 GC+E +A+ A+ + A ++ + + ++ + A ++G+ + Sbjct: 242 NVGCVEAMAAGPAITRMAVQAAEAGESAMLAECLRVHGRIDAIDVGQASRAGDTAANGII 301 Query: 310 DRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKAT 369 R+ N IG L + +N N + +++ G G +L + + + + R S + Sbjct: 302 QRAGNLIGQMLASVVNFFNPSHVFIGGGITRIGPLFLAAVRQ----SVYQRSLALSTRHL 357 Query: 370 QIGFGQLSRAQQVLGIGYLYVEAQLR 395 +I + L ++G G L + L+ Sbjct: 358 EIQYTPLGVQGGLVGAGVLAMHETLK 383 >UniRef50_A0KIG1 N-acetylglucosamine repressor n=151 Tax=Gammaproteobacteria RepID=A0KIG1_AERHH Length = 425 Score = 285 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 78/365 (21%), Positives = 151/365 (41%), Gaps = 10/365 (2%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N I+ N + L+ Q ++ +A L+Q++ +V+ I ++L + ++ Sbjct: 29 NVDLIKQVNSAAVYRLIDLQGPISRVKIAELSQLAPASVTKITRQLIEHGLIKETSPQAS 88 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQID---APTPQALL 122 T G + + + + ++ + + + + P LL Sbjct: 89 TGGRRAISLTTIKHRFQFVSAKLGRGYLQLALYDLDGKELDQHITQVTEIEQQPVVDMLL 148 Query: 123 SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 EI + + I++AL + G V+P +G+ P+ + + LLE + Sbjct: 149 REIGAFIDSQQDRS-RNLISIALTMPGLVNPESGMVIYTPKYQIRN-LALAKLLENHFNL 206 Query: 183 RVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V ND LALAE + S++ D +++V G GS + +++ G G+IGH Sbjct: 207 PCYVGNDTRSLALAEHFFGESRDCMDSILVSVHQGAGSGIITKGKVFLGQNRNVGEIGHI 266 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 V P G C CG +GCLET+AS A+ + + + +S+ L + +T ++ A +G Sbjct: 267 QVEPLGKRCHCGNFGCLETIASNEAIVDKVKELISRGHLSS-LQEKHITIQEVCKAAMAG 325 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIR---QTGFNPF 358 + S ++ +G ++ +N+ N ++ + G A E I R F Sbjct: 326 DELARSVIENVGEHLGRAVAITVNLFNPQKVLIAGEITAAEEILFPAIRRCVEHQSLPSF 385 Query: 359 DRDEG 363 R Sbjct: 386 HRGLP 390 >UniRef50_D1BCW6 Transcriptional regulator/sugar kinase n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BCW6_SANKS Length = 429 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 82/398 (20%), Positives = 157/398 (39%), Gaps = 18/398 (4%) Query: 11 RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHS 70 R + VI++ + ++ L ++ VS +++ L + VV T G Sbjct: 6 RSASTSVIVDAIRASGTVSRVGLTVTTGLTGATVSTVVRRLIDDGLVVETGRAESTGGKP 65 Query: 71 SGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWH 130 + P + + +++ SI C V + + + +P +L E Sbjct: 66 RVLLELDPTARYAVGVHLDHASITCTVTDLAGTSVALSTHPGPGTRSPAEVLVETAAEVD 125 Query: 131 R---HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVD 187 R + + + G + G+ +T P+ T + L G+ V+++ Sbjct: 126 RLVDEAGVDRSRVLGIGFVAPGPLTSDGGMHRTPPEMRAWTDYPITSELGRLTGLPVVLE 185 Query: 188 NDCVMLALAEKWQNN-SQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPD 246 ND A+ E W E F V+ + G+G+ V++ YRGS +G+IGHT ++ D Sbjct: 186 NDATASAIGEHWAGGTGTENSFAVLYMGTGLGAGLVLDGVAYRGSSGNAGEIGHTTLDLD 245 Query: 247 GVVCDCGRYGCLETVASLSALKKQARV---WLKSQPVSTQLDPEKLTTAQLIAA------ 297 G VC CG GC+E +A +A+ +AR + +ST + + + Sbjct: 246 GPVCWCGTRGCVEVLAGPAAVVAEARRSPDLAAAAGLSTGTSGSEPQPSVVSDLAAVARA 305 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG-RSCAFGENWLNTIIRQTGFN 356 +G P ++RSA + + +N+L++ + L G A G+ +L + + Sbjct: 306 AAAGHPGARDVLERSARYVAAAALTAVNLLDVRMLVLTGASLAAAGDIYLPAVRGVLASS 365 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 F R P + + + LG L ++ L Sbjct: 366 LFARGAHP----VDVRLSRTAATAPALGGAALVLQTHL 399 >UniRef50_C6Y2I2 ROK family protein n=5 Tax=Bacteroidetes RepID=C6Y2I2_PEDHD Length = 405 Score = 285 bits (730), Expect = 2e-75, Method: Composition-based stats. Identities = 83/388 (21%), Positives = 155/388 (39%), Gaps = 13/388 (3%) Query: 15 KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTW 74 K +I+ L + A + L R +SIP V+ + L +E V + T G + Sbjct: 23 KKIIISYLAEKGHATIADLCREMNLSIPKVTTSVTMLITEGVVKDFGKVGSTGGRRPNIY 82 Query: 75 LIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRH-- 132 + P+ + L ++V I + + +Y+ + L E+ + Sbjct: 83 GLVPDSGFFLGVDVKHQHINIGLIDLQKVIIKITKYIPYQLINNKDALYELCRLIKEFIY 142 Query: 133 -RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCV 191 + + L + + G+++ TG S + +LE++LGI+ MV+ND Sbjct: 143 NTSIPKYKILGLGINLSGRINHETGYSYNFFNFY---EDPLSTILEKELGIKTMVENDSR 199 Query: 192 MLALAEKWQNN-SQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVC 250 +A E +E D +N+DYGIG ++N+++Y G +G++GH + + ++C Sbjct: 200 AMAYGEFSAGVVKEEEDVLFLNLDYGIGMGIMLNKKLYYGKSGFAGELGHVPLLNNEIIC 259 Query: 251 DCGRYGCLETVASLSALKKQARVWLKSQPVST--QLDPEKLTTAQLIAAWQSGEPWITSW 308 CG+ GCLET AS L + + +++ +T + +L +I A + + Sbjct: 260 QCGKKGCLETEASGQGLIRMFKTRVEAGSTTTIDKNKLGQLQVQDIIRAANNDDVLSIEL 319 Query: 309 VDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKA 368 + + +G + +NI N I L G GE I Sbjct: 320 LAKMGEILGRGIAMLINIFNPELIVLGGLLAETGEYIQLPIKSAVNKYSLSLMNN----D 375 Query: 369 TQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 T++ +L V+G L L Sbjct: 376 TKLKLSKLGEEAGVIGSCLLIRNKLLEH 403 >UniRef50_Q0FFU4 Xylose operon repressor n=6 Tax=Rhodobacterales RepID=Q0FFU4_9RHOB Length = 421 Score = 284 bits (728), Expect = 3e-75, Method: Composition-based stats. Identities = 81/390 (20%), Positives = 154/390 (39%), Gaps = 14/390 (3%) Query: 15 KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD--ESQTRGHSSG 72 + I EL+ R ++ +AR IS +V+ + EL S+ + +++ +RG Sbjct: 34 RQQIFELVRATGRIARAKIARTLDISPGSVTALTAELISDGFLREVEETSRETSRGRPPV 93 Query: 73 TWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQI-DAPTPQALLSEIEKCWHR 131 + P+ + + + ++ + + + + D + LL+E E + Sbjct: 94 ALELVPDALYVIGVKLSDELHTATLTDFGGNALASASQITTADKKSADELLTETEAIIRK 153 Query: 132 H---RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDN 188 K+ + + I G V+ TGV P + + V +DN Sbjct: 154 VCKSAKISQKKISAIGVGISGIVNYETGVVAWSPLLEELD-TPLGDIFSTYFKTPVCIDN 212 Query: 189 DCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDG 247 D +L LAE W + +F VI +++G+G FV + +++RG+ ++GH+ V DG Sbjct: 213 DANVLTLAELWFGAGRALSNFAVITIEHGVGMGFVSDNRLFRGAHSMGLELGHSKVQLDG 272 Query: 248 VVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITS 307 +C CG+ GCLE + AL ++A L + P S + D L + G+ Sbjct: 273 ALCRCGQRGCLEAYLADYALAREASTALIT-PSSKRQDLNDY-LKSLYEMAKLGDQASLK 330 Query: 308 WVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVK 367 R+ + ++L N +++ + I L G+ + E + + S Sbjct: 331 IFKRAGRYLAVALSNIIHLFDPKLIILSGKPMQY-EFLYD---EEMQIEMRSLALYKSRF 386 Query: 368 ATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 TQI G L + + I Sbjct: 387 DTQIEIQSWGSMVWARGATALALTELTKTI 416 >UniRef50_C7PW32 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PW32_CATAD Length = 396 Score = 284 bits (728), Expect = 4e-75, Method: Composition-based stats. Identities = 83/403 (20%), Positives = 160/403 (39%), Gaps = 20/403 (4%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 MR ++ +R N+ ++ Y + + +A +S+ I+ EL + + Sbjct: 1 MRPRLSG-DLRRANRVEVMRSFYGGRTLTRGDVAAQLGVSVATAGTIIGELTAAGLLAET 59 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEY-LQIDAPTPQ 119 G + + + + +++ T + ++ + ++ G F+ + P Sbjct: 60 QSPRSGGGRPASQLTMRAGAPYLVGVDLAETYVIAEIFDQAMTRVGHFQTPVAPTDDDPD 119 Query: 120 ALLSEIEK----CWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 +++ + + + +++ GQVD GVS P W V L Sbjct: 120 SVVGHVVDSVQGVIAALDGVSAADVAGVGVSLPGQVDREGGVSVHAPNWGWH-GVPFTSL 178 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYG 234 ++ + V++DN + LAE D V+N+ G+G V ++ RG Sbjct: 179 FHKRCDLPVLLDNPLKAITLAEMMFGEAGDHDDAVVVNLGTGVGLGVVAEGRLLRGRTNT 238 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQL 294 +G+ GHTI+ DG+ C CG GC+E +AL P+ D + T A+L Sbjct: 239 AGEWGHTILVADGLPCHCGSRGCVEAYVGAAALLDLLTDVDPDSPLLVPGD-QAATVARL 297 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRS-CAFGENWL---NTII 350 A S +P + ++R A +G++L N +N+LN + + G AFGE L ++ Sbjct: 298 AEAVASADPVAVATLERFARPLGMALANAVNMLNPELLVVGGWVSAAFGEPLLAAVEPVV 357 Query: 351 RQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 +Q A + +++ LG+ L E Sbjct: 358 KQFSL-------AVPYDAVTLAASRIADNPVSLGMAVLAFETF 393 >UniRef50_A9F5U1 Transcriptional regulator of the ROK-family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F5U1_SORC5 Length = 408 Score = 284 bits (727), Expect = 4e-75, Method: Composition-based stats. Identities = 91/398 (22%), Positives = 156/398 (39%), Gaps = 14/398 (3%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 NN+ R N+ ++L+L+ +++ LARL+ ++ P VS I++EL V ++ E Sbjct: 8 TANNRTPRELNRSLVLDLVQEHGPISRTNLARLSGLTKPTVSAIIEELLDSGSVRDVGTE 67 Query: 64 SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLS 123 G + + L + + VA+A + E + P + Sbjct: 68 -SRGGRPARLLEFNDDSAAFLGIEIGVEQTAVAVADARGRLRARLEQPTV-LRDPHRTVR 125 Query: 124 EIEKCWHRHRKLW---PDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 +I + + +L + G ++ +GV P W V+ L L Sbjct: 126 DIVELLPKVLQLSGVPRKRLRGACAVLPGLIERPSGVCVLAPNLGWER-FPVRAELSRAL 184 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 ++V V N A+AE ++ + I V G+G+ V + +++ G SG+IG Sbjct: 185 RMQVPVYNLPQAAAVAEGELGAARGHASYVWIYVGLGVGAGLVADGRLFFGMQGYSGEIG 244 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 H V DG C CGR GCLET AS+ AL++ A P L +A +A Sbjct: 245 HCRVADDGPPCGCGRRGCLETFASVMALRRAAEAASARSPQLAALARPHAVSAV-ASAAL 303 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 +G+ + + + + LN+LN I L G A + L + + Sbjct: 304 AGDESARAIFHDAGAQLARGIAVLLNLLNPQLIVLGGELLAAPDILLAGVRDGLPRHAVR 363 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 + P + L VLG L E +R + Sbjct: 364 GADVP------VVASPLGSEAGVLGALLLAREGAVRSL 395 >UniRef50_A9KTE3 ROK family protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KTE3_CLOPH Length = 381 Score = 283 bits (725), Expect = 6e-75, Method: Composition-based stats. Identities = 74/389 (19%), Positives = 151/389 (38%), Gaps = 25/389 (6%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 + + IR N ++LE + + + +++ +++ ++ +S I+ + ++K VV I E Sbjct: 5 SKELIRDINSKLVLETIIQNEPISRAAISKKLGLTKATISAIVSDFINDKLVVEIGSEDT 64 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEI 125 G + + +C+++ + I C +++ + + +L ++ Sbjct: 65 GLGRKPILLSFHKKAGYAICVDIEVSRISCMISDLKGEQRSVKQIKTPSESNLVPVLIDL 124 Query: 126 EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVM 185 + + P I +A+ IHG V P + + L G+ V Sbjct: 125 IQSMESEYEKTPYGLIGIAIGIHGVVHQNE--VLFTPYYN-LNGINLSEQLGSYFGVPVF 181 Query: 186 VDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNP 245 ++N+ + AL EK +++ G+G ++N+Q+Y G +G+ GHTIV Sbjct: 182 LENEANLSALGEKAYLPETYTSLANLSIHSGVGLGIILNKQLYTGYHGNAGEFGHTIVVM 241 Query: 246 DGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWI 305 +G C CG GCLE AS AL K+ E + L+ A++ EP Sbjct: 242 NGRTCPCGNQGCLEQYASERALLKEYS--------------EDASLDDLLLAYEKKEPKA 287 Query: 306 TSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPS 365 ++ N + + + N N ++ I + I ++ D+ Sbjct: 288 MGVMEHFVNYMAVCVNNLQNTISPEIIIINSAFTNAYPELAEMIAKKVNNKLVDK----- 342 Query: 366 VKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + L +LG + V+ L Sbjct: 343 ---IPLIASNLKDHSILLGGITVLVKNFL 368 >UniRef50_D2PL28 ROK family protein n=18 Tax=Actinomycetales RepID=D2PL28_9ACTO Length = 404 Score = 283 bits (724), Expect = 1e-74, Method: Composition-based stats. Identities = 86/400 (21%), Positives = 147/400 (36%), Gaps = 15/400 (3%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + +R N+ VIL +YR ++ L R +S +VSN++ EL E V Sbjct: 4 RRTTVRDMRRSNRSVILTSIYRHGPLSRYELGRETSLSAASVSNLVGELLDEGVVEEAGS 63 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEY-LQIDAPTPQAL 121 G +AP + + V T + ++ + ++ ++ P P+ Sbjct: 64 VESDGGRPRVLLRVAPTFGYVVGAEVGETRVRVELFDLAMNVVATVVSPIETPKPAPELA 123 Query: 122 LSEIEKCWHRH---RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 + + + + + + L +A+ G V+ W V + +L Sbjct: 124 VRSVLQGLDEVIAGAGVAKERVLGLGVAVAGVVEGPADAVVHAQTLGW-DGVPLGAMLAA 182 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 I + VDN L AE W + D V V G+G++ V YRG+ +G+ Sbjct: 183 GTEIPIQVDNGANTLGQAEMWFGAGRGATDAVVALVGSGVGAALVTGGTSYRGTRSSAGE 242 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 GHT + G C CG GCLE A+ ++ R + S D E+ L+AA Sbjct: 243 WGHTTIMYGGRQCRCGALGCLEAYVGAEAVLERYRE---AGGPSAATDDEEAEFVALLAA 299 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIW-LYGRSCAFGENWLNTIIRQTGFN 356 + V+ + +G N +N++N +I GE +L + G + Sbjct: 300 VGT-SEVAAKVVEDTIGYLGAGFANLVNLVNPERIVLGGWAGLLLGERYLPQLREAVGRH 358 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 R I +L G L V LR+ Sbjct: 359 ALRR----PYAQVAIELCELGSDAVARGAATLPVLRLLRE 394 >UniRef50_Q1IZX8 ROK domain protein n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1IZX8_DEIGD Length = 408 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 86/378 (22%), Positives = 143/378 (37%), Gaps = 21/378 (5%) Query: 32 TLARLAQISIPAVSNILQELESEKRVVNIDDESQTRG----------HSSGTWLIAPEGD 81 LAR +S A+S+I+ EL V G + + Sbjct: 2 DLARELGLSRSAISSIVTELMDAGLVREAGQRVAGNGASRGAGGPVGRRATLLSLNARAA 61 Query: 82 WTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA---LLSEIEKCWHRHRKLWPD 138 L +++ + + + + P A LL E+ + + + Sbjct: 62 HLLAVDLGASHARVDLLDLRCTTLATRTAQHDILRGPAATYALLKELAQAVLEEAGVPRE 121 Query: 139 HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEK 198 + + G VD TG P P V LE L + VDND + ALAE Sbjct: 122 RVAAVGAGVPGPVDYATGCVVQPPNMPGWDGENVMAGLERVLDLPTRVDNDANLGALAES 181 Query: 199 WQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGC 257 + D + V GIG+ ++ +++RG G+G+IGH +N G V G G Sbjct: 182 RFGVHRGAADLIYVKVATGIGAGVLLGGRLHRGVRGGAGEIGHISINEQGPVGRSGNPGS 241 Query: 258 LETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIG 317 LE+ A+ L + AR ST DP LT A LIA + +P + + + +G Sbjct: 242 LESYAAAQVLLETARARRAGGVPSTLPDP--LTLADLIAFANT-DPLARAVWAEAGHHLG 298 Query: 318 LSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLS 377 +++ LN+ N + + + GR GE +L+ + + R + +I L Sbjct: 299 VAISTALNLFNPSAVVIGGRLAQAGEVFLHAVRE----SALSRTMRINADRARIDLSTLG 354 Query: 378 RAQQVLGIGYLYVEAQLR 395 VLG G + ++ Sbjct: 355 EGAGVLGAGAMLLDHLFT 372 >UniRef50_C7PY53 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PY53_CATAD Length = 422 Score = 282 bits (723), Expect = 1e-74, Method: Composition-based stats. Identities = 82/398 (20%), Positives = 147/398 (36%), Gaps = 34/398 (8%) Query: 15 KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR------- 67 + IL+ L R +++ L R ++ VS+++ +L S V D + Sbjct: 23 RVRILQALTSHARLSRADLVRHTGLARTTVSSVIFDLISAGLVRESPDVRENSDTAAAAA 82 Query: 68 ---------GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP 118 G + PE + + L+V + V + +P+ + P Sbjct: 83 AGAAPGQRTGRPPLLLRLEPEAAYAVGLDVGHDHVRAIVTDVVGTPRWDRTEALAVDDDP 142 Query: 119 QALLSEIEKCWHRHRK---LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 + L + K + P + L L I VD TG P Sbjct: 143 RRALDTAVRLIAEAVKDTAVPPHKILGLGLGIACPVDKTTGGLHAEGIMPGWVGTRPADD 202 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYG 234 L E+ G+ + ND LAE+ ++E + + + GIG+ + ++ G Sbjct: 203 LAERTGLPTQIINDANAGVLAERRFGAAREATNVVYVRLAAGIGAGMMSEGRMLLGHHGL 262 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQL 294 +G++GH +V +G VC CG GCLETVAS +A+ + + + + L Sbjct: 263 AGELGHVMVELNGAVCRCGSRGCLETVASPAAIA----------GLLARSWGQPADSIDL 312 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTG 354 + G+ V+ + A+G +L + +LN + + G GE L I R Sbjct: 313 PELLRRGDRGALRVVEDAGEAVGRALSAAVQLLNPQLVVIGGDLAEAGEALLEPIRRTLR 372 Query: 355 FNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEA 392 G + +I L + V G L +++ Sbjct: 373 R----GTMGSLNQRLRIVPSTLGDSAGVRGAAALVLDS 406 >UniRef50_A9WVF3 Transcriptional regulator, ROK family n=4 Tax=Micrococcaceae RepID=A9WVF3_RENSM Length = 426 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 80/399 (20%), Positives = 160/399 (40%), Gaps = 10/399 (2%) Query: 2 RACINNQQIRHHNKCVILELLYRQKR-ANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 R N ++ N VIL+ + R ++ LA + ++ VSNI + L + +V Sbjct: 19 RRGTNLPRMGDFNLSVILDAIRRSPEGLSRVELAGIVGLAAQTVSNICRRLLDQNLIVEA 78 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 G + P G + + +++ P + + + +L PQ Sbjct: 79 GKYGSGPGKPRTILRLNPGGMYAVGVHLDPVETNYALLDLTGAVVTTRTHLTQPDAEPQQ 138 Query: 121 LLSEIEKCWHR---HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 + + + + + + L +A G +D TG P P VE++ L Sbjct: 139 TIDAMAEEIESIISEQNIERNKIAGLGIAAPGPIDGATGAIVEPPHMPGWGTVELRERLH 198 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNN-SQERDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 + + + V++D D A+AE W S F + + GIGS V+++++ RGS +G Sbjct: 199 KAVELPVLLDKDVTAAAVAEIWAGGLSGSGSFIFVYIGTGIGSGLVLDDEVVRGSSGNAG 258 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 ++GH I +PDG CDCG+ GC++ + +A + + ++ A L Sbjct: 259 EVGHIIADPDGPDCDCGKRGCVKVTCMPENIVAEAAAAGFKAVLDNKGKSLQVQMAALSE 318 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGEN-WLNTIIRQTGF 355 A +G+ +D +A ++ N+L+++ + G E +L + ++ Sbjct: 319 AALAGDAAAQKILDLAAERFATAVSVQANLLDVDHVVFGGPFWKHFEPTFLAKLPQRIN- 377 Query: 356 NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 +R V + ++ + +G L +E Sbjct: 378 ---ERSATSKVHSVEVVGTGVGSDVGAVGAACLVLEDTF 413 >UniRef50_C1D0G6 Putative transcriptional regulator, NagC family n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0G6_DEIDV Length = 440 Score = 281 bits (719), Expect = 3e-74, Method: Composition-based stats. Identities = 90/399 (22%), Positives = 161/399 (40%), Gaps = 13/399 (3%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 A ++ IR + ++L+LL+ + RA + +AR +S A+S+I+ EL V + Sbjct: 7 APLDLAAIRARHTALLLQLLWERDRA-RVDIARDLGMSRSAISSIVSELIGVGLVQEGNT 65 Query: 63 ESQTR-GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA- 120 R G + + L +++ + + + + P Sbjct: 66 RGSGRAGRRATLLSLNARAAALLAIDLGASHVRMDLMDLRCRTLASRTVPHEVISGPAET 125 Query: 121 --LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 LL + R + DH + L + G VD TG P P V+ L+ Sbjct: 126 YHLLLRLADAVQREAHVPADHVALVGLGVPGPVDQDTGRVIRPPNMPGWDGEPVREALQR 185 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 LG+ V+VDND + A AE + D + GIG+ ++ +++RG G+G+ Sbjct: 186 HLGLEVLVDNDANLGAQAEARFGPHRGVSDLIYVKAATGIGAGVLLGGRLHRGVRGGAGE 245 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 IGH +N G V G G LE+ A+ L A + + DP +T L+ Sbjct: 246 IGHISINEQGPVGRSGNPGSLESYAAAQVLVATAEARRAAGAPTLLTDP--VTLPALVRH 303 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNP 357 ++ +P + + +G+++ LN+ N + + GR G +LN + + Sbjct: 304 AET-DPLARELWEDVGHHLGVAISTALNLFNPAVVVIGGRLAEAGPVFLNAVRS----SA 358 Query: 358 FDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 R + + T+I L VLG G + ++ L Sbjct: 359 LSRTMQINAERTRIDLSTLGGDAGVLGAGAMMLDQLLTS 397 >UniRef50_UPI0001C357A7 transcriptional repressor n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C357A7 Length = 405 Score = 280 bits (718), Expect = 5e-74, Method: Composition-based stats. Identities = 70/405 (17%), Positives = 167/405 (41%), Gaps = 19/405 (4%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVN--- 59 N +++ N+ +I E++Y+ ++S +A + ++ P ++ + L V Sbjct: 4 RGTNLPRVKKQNEALIKEIIYKYGPISRSKIAEMLSLTPPTITTNVTSLIERGLVYEFAA 63 Query: 60 --IDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPT 117 D E ++ G E + + + + P + + + K Y ++ Sbjct: 64 DDSDVEERSLGRKPVKINFVQEAKYAVGVEMNPYHTAICMLDLRGNEKISMRYPPMNRTY 123 Query: 118 PQA--LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 + +L+ + P+ + + + + G V+P GV + + W + Sbjct: 124 VEEMDVLARNINKLIQDSGTEPEKILGVGVGLPGFVEPDVGVLRESFKTEW-NGKNIARD 182 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYG 234 L +L + V+++N+ + A+ E+ + + F + YGI + ++ G Sbjct: 183 LSRRLDLPVLIENNARVRAIGEEMFGKTLRPDSFAYYLISYGIACPLFVKNRMITGDNAS 242 Query: 235 SGQIGHTIVNPDGVVCD-CGRYGCLETVASLSALKKQARVWLKSQPVSTQL----DPEKL 289 +G+ GH +V+ +G C+ CG GCLE +AS A+ K+ + ++ + D E L Sbjct: 243 AGEAGHMVVDINGPKCETCGHNGCLEELASERAIIKKCKAAARAGVSTMLTELCPDIEGL 302 Query: 290 TTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 T ++ A + + ++ ++ + +G++L N +N+++ + + G N + Sbjct: 303 TMKDVLMAEECNDAYVVKVMEEAVMYLGVTLANIINLISPPLVIVDGYMMKVKRN-RRQL 361 Query: 350 IRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + +T + F G + + +I F + G L ++ Sbjct: 362 LEETKKHIF----GLNDQEIEIEFIDFNPLTGARGGAALAIKQLF 402 >UniRef50_C1I2A3 Xylose repressor protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I2A3_9CLOT Length = 397 Score = 280 bits (718), Expect = 5e-74, Method: Composition-based stats. Identities = 77/410 (18%), Positives = 176/410 (42%), Gaps = 27/410 (6%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ N Q++R IL+ +Y + ++ ++ I+ VS I + E + I Sbjct: 1 MKLTKNQQKLR----FKILDKIYAKGPISRIDISNETGITPATVSEITGNMIQENLIHEI 56 Query: 61 DD---ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPT 117 + E G I+P + + ++P I + + E + +Q+D Sbjct: 57 GEVIPEENKSGRKKILLGISPNHSFYIGTELSPKYISFCLTDNIGKIYKE-KTIQLDNSN 115 Query: 118 PQALLSE---IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKY 174 + +LSE I K + + +A+ G D V T + ++ Sbjct: 116 LEEILSEEFYINKLSSFIDSCTNYNPKGIGIALPGHFDEVNKSIIT--NNSFWKNFDITI 173 Query: 175 LLEEKLGIRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLY 233 LL E+ + + +N+ + L+E+ + N + +F +V G+ S++ N ++Y + Sbjct: 174 LL-ERFDLPIYFENNVKCMTLSERLFSFNGNDDNFIFFHVGRGMFCSYMYNGELYAKDNF 232 Query: 234 GSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQL----DPEKL 289 G+IGH +V+P+G +C+CG+ GCL+T S + + K++++ + + + K+ Sbjct: 233 LVGEIGHIVVHPNGELCECGKRGCLQTYGSEAWIIKKSQILFDNSETTYLKQLVSERNKI 292 Query: 290 TTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 T ++ A++ G+ I ++ + N + +++ N +++ ++I ++G E + + Sbjct: 293 TIETILKAYRLGDEGIIKILNSAINYLSITINNLSMMIDSSKIIIHG------ELFNEDL 346 Query: 350 IRQTGFNPFDRDEGPSVKATQ--IGFGQLSRAQQVLGIGYLYVEAQLRQI 397 ++ ++ K + I + + L L V L ++ Sbjct: 347 LKNLLEELLKQNINLLSKNIKQDILLKEYNNYNGALAAAALCVSKLLIKL 396 >UniRef50_C9L9I3 Putative regulator n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L9I3_RUMHA Length = 393 Score = 280 bits (717), Expect = 6e-74, Method: Composition-based stats. Identities = 80/357 (22%), Positives = 156/357 (43%), Gaps = 16/357 (4%) Query: 12 HHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ----TR 67 N+ ILE ++R +ST+A+ QI+ V++I E + I E + Sbjct: 4 QENRSTILEYIFRNAPVARSTIAKQTQITPATVTSISGNFIQEGIIQEIGAEDNAADCSP 63 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSP--KGEFEYLQIDAPTPQALLSEI 125 G I P+ + + + T I + N + F + D ++E Sbjct: 64 GRKRILLDIVPDKVYAMGIEFTSRHIRFSICNLRGDTVFQSSFSVKETDNGNITDFIAEK 123 Query: 126 EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVM 185 + + + + + +A+ G +D T P L+++L I ++ Sbjct: 124 AEDILKENPSFAASIVGMGIAVPGHIDAHQDKVITNSSL---CPQFSGEALKKRLNIPII 180 Query: 186 VDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNP 245 +N+ +A + S F +V G+ + + N ++++G+ Y +G+IGHTIVNP Sbjct: 181 CENNVRCMAFGRYLFDRSSPDTFAFFHVGAGMFCALIENSKLFQGTNYYAGEIGHTIVNP 240 Query: 246 DGVVCDCGRYGCLETVASLSALKKQARVWLKSQPV----STQLDPEKLTTAQLIAAWQSG 301 +G C+CG+YGCL+T S + L K R+ +S S + + LT + A+ G Sbjct: 241 NGKKCECGKYGCLQTYCSETWLLKYCRLLYESNADTILPSLKPCADALTIEDISNAFSLG 300 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRS---CAFGENWLNTIIRQTGF 355 + + +++ + +G+++ N I N ++I+L+G E ++ I +Q F Sbjct: 301 DTLVGNYISTALKYLGITVSNLAIITNPDKIYLHGNLFSNTEIKEELMDYITKQLLF 357 >UniRef50_C6PY82 ROK family protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY82_9CLOT Length = 400 Score = 279 bits (714), Expect = 1e-73, Method: Composition-based stats. Identities = 64/384 (16%), Positives = 160/384 (41%), Gaps = 11/384 (2%) Query: 19 LELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIAP 78 L+++ ++ K ++ + +++ ++ +++ LE +K + T G + + +A Sbjct: 16 LDIIQKKGLITKKSIQAITGMTLTTLNRVMKSLEDKKLISEAGISKSTGGRKAVKYDVAQ 75 Query: 79 EGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHR---HRKL 135 G + + ++++ T + + N ++ + E+ D+ +P+ + +I + Sbjct: 76 SGIYAIGVDMSRTYVRIVILNLKMTILEKKEFFMDDSFSPEKTVEKIGNIIDEGLLKLSI 135 Query: 136 WPDHTINLALAIHGQVDPVTGVSQTMPQAP--WTTPVEVKYLLEEKLGIRVMVDNDCVML 193 + + + G +D GV + V ++ + E++ + +DN Sbjct: 136 DKSEVLGIGIGTVGPLDREKGVMINPKNFFNELWSNVPIRDMFEKRTSLPCFIDNGTNAA 195 Query: 194 ALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDC 252 LAE ++ ++ ++ GI S+ + N I R H +V+ +G C C Sbjct: 196 VLAEYLFGKGKDFKNIVYVHCGIGIRSAVINNGIIIRTMRDSEDAFAHMVVDFNGEECSC 255 Query: 253 GRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRS 312 G GCL++ +S++A+ K LK+ T + ++ +++ + +++ Sbjct: 256 GNKGCLDSYSSINAIVKSFNSILKNNNNDTNEEIKEEDYKKILELTVNNNKSAVEIINKG 315 Query: 313 ANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIG 372 A +G+ L N + ILN + LYG + + N + F++ + + Sbjct: 316 AEILGVGLANMVRILNPQLVILYGPLIKNYKLYYNK-----CIDAFNKSNCLNNEVIFSD 370 Query: 373 FGQLSRAQQVLGIGYLYVEAQLRQ 396 G+ +G G + +E L++ Sbjct: 371 GGEFKGNAIAVGSGLIVIENYLKK 394 >UniRef50_UPI0001C3141A ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3141A Length = 397 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 87/384 (22%), Positives = 152/384 (39%), Gaps = 18/384 (4%) Query: 11 RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHS 70 R N+ +L LY + ++ LA +S P VS + EL V +D G Sbjct: 12 RQTNRFKVLRALYEHPGSTRTELAADTGLSRPTVSTVTDELVQAGIVAQHEDTQPRTGRP 71 Query: 71 SGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA---LLSEIEK 127 +A + + L++ ++ V++ G P L E+ Sbjct: 72 PVLLSLASGAAYAVGLDMGHAHVQVAVSDLSGQILGHERSAADVDHAPVESFDLAGELVH 131 Query: 128 CWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVD 187 + D I + +A+ VD TG P V+ +E +L + VMV Sbjct: 132 GALGQAGVPLDRVIGVGMALAAPVDRATGTVFADGILPSWGRVQPAIEMEARLDLPVMVH 191 Query: 188 NDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPD 246 ND + AL E ++ + + + G+G V+ + Y G+ +G++GH V P+ Sbjct: 192 NDANLGALGEHVFGAGRDVAEMMYVRLSAGLGLGLVLGGRPYGGTSGVAGELGHVRVAPE 251 Query: 247 GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWIT 306 G++C CG GCLETVAS +A+ + + E ++ +L+ G+ Sbjct: 252 GLICRCGNRGCLETVASSTAVAR----------LLAHSRDEPVSVERLLELVADGDRGAR 301 Query: 307 SWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSV 366 V + +G +L +N+ N I + G A G+ L + T + + P+ Sbjct: 302 RAVAEAGKTVGEALATVVNLFNPELIIVGGDLAAGGDALLAPLR--TAIDEYA--VAPAA 357 Query: 367 KATQIGFGQLSRAQQVLGIGYLYV 390 A + G L +VLG L + Sbjct: 358 GAVTVSLGALGDKAEVLGAVALVL 381 >UniRef50_UPI0001C31CF6 ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31CF6 Length = 402 Score = 278 bits (712), Expect = 2e-73, Method: Composition-based stats. Identities = 77/397 (19%), Positives = 152/397 (38%), Gaps = 12/397 (3%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + +R N+ +L L R+ ++ +A A +S +N++ +L E + Sbjct: 4 TRRTTRDVRLGNRASVLYTLRREGPISRQDIAVRAGVSAATANNVVGQLLEEGVLGEAGQ 63 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLS----PKGEFEYLQIDAPTP 118 G + I P + +++ T++ ++ + L + A Sbjct: 64 MPSNGGRPASLTGINPGYGAVVGVDLGETAVRLELFDLALQRTLLVDTPVRAGEQGAEAI 123 Query: 119 QALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 L++ + + + + L + + G V+ P W + LLE+ Sbjct: 124 AELIAAGVERLLSESGVARERLLGLGVGVPGIVEDSGTSLVHAPSMGWE-GAPLAALLEQ 182 Query: 179 KLGIRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 + G+ V N L AE W + +D V + G+G+S + +YRG+ +G+ Sbjct: 183 RTGLPATVSNGAKALGTAEAWFGAAGEGQDVVVCLIGTGVGASLLQQGTLYRGASASAGE 242 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 GHT + DG C CG +GCLE A+ ++ W +T E+ QL A Sbjct: 243 WGHTTIVLDGDTCRCGAHGCLEAYVGAPAIVRR---WAAVSGEATAGLGEEEVIEQLAVA 299 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNP 357 ++G + +A +G + + +N++N ++I + G L ++R+ Sbjct: 300 AEAGGEQALEVLRETARYLGAGVSDLVNLVNPDRIVIGGWVGLRLGPLLLPLVREQARR- 358 Query: 358 FDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 R GP + + L LG + V+ Sbjct: 359 --RALGPPFERLTLDLCHLGPDAVALGAATMIVDRFF 393 >UniRef50_A1SS79 ROK family protein n=2 Tax=Psychromonas RepID=A1SS79_PSYIN Length = 408 Score = 278 bits (711), Expect = 3e-73, Method: Composition-based stats. Identities = 74/347 (21%), Positives = 156/347 (44%), Gaps = 9/347 (2%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 I+ N I +++ + ++ +A +++++ +V+ I ++L + + ++ T Sbjct: 16 DHIKQLNSATIYKVIEKYAPISRVKIANVSKLAPASVTKITRQLLQQGIICETARQASTG 75 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLS---- 123 G + + + L + + ++ N + ++I + Q LL+ Sbjct: 76 GRCAISLAPNTDNIHVLAIKIGQKTLSLSCYNLAAEQL-TTKKIKIKSEDEQQLLAFLIS 134 Query: 124 EIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIR 183 EI+ + +K +A+++ G ++P GV P P + +E+ + Sbjct: 135 EIDNFIKKQQK-NMGKISAIAISLSGLINPKKGVVLYSPYHPLVN-FPLANKIEQHFQLP 192 Query: 184 VMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 + N LALAE + S+E D +I++ +G+GS +I + G + G+IGH Sbjct: 193 TFIGNHTRSLALAEHYFGASKECLDSILISIHHGVGSGIIIEGKALLGQNFNIGEIGHIQ 252 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 NP G C CG +GCLET S + ++ + +K T+L + L ++ A + + Sbjct: 253 ANPAGRQCHCGNFGCLETEVSDRVIVEKVAIAIKQGSF-TRLSLDSLNIEKIYQAAEDND 311 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 P V+ +A +G ++ +N+LN +I + G+ + L+TI Sbjct: 312 PLCQKIVEDAATYLGKAIAILINLLNPQKIIIAGKIIRAKTSLLSTI 358 >UniRef50_A6LW15 ROK family protein n=5 Tax=Clostridium RepID=A6LW15_CLOB8 Length = 382 Score = 277 bits (709), Expect = 6e-73, Method: Composition-based stats. Identities = 83/393 (21%), Positives = 149/393 (37%), Gaps = 18/393 (4%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 +N+ +I+ N+ I+ LL ++ K ++R+ ISI VS + EL+SE V ++ Sbjct: 4 VNHSKIKETNRKKIIALLLKKNEITKLDISRILDISITTVSTNITELKSEGIVEDVRSLE 63 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDA--PTPQALL 122 T G + + +++ + +TP I+ + N LL Sbjct: 64 STGGRKAIAIKLNENCRYSIGVALTPNHIKISLVNIKKKVIESMRVRHNSDGIENIINLL 123 Query: 123 SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 +E + L + + + +++ G VD G+ + +K E L I Sbjct: 124 NENIDLLMKKYNLCSANLLGIGISLPGTVDFKEGIIKYSYLLGAKD-FNLKEKF-EYLDI 181 Query: 183 RVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 V VDN+ + A E R+ +++ G+G +IN +IYRG SG++GHT Sbjct: 182 PVYVDNEANLSAYYEFLNKRDILRNLLYVSITEGLGLGIIINGKIYRGDNNSSGELGHTK 241 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 + DG C CG GCLE S+++L S + + + Sbjct: 242 IAIDGKKCKCGARGCLEAYTSMNSLIDSYNEANSSNIS---------DIDEFEERYNQND 292 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDE 362 ++ + L L N + I + + I + G N LN I + + Sbjct: 293 KDAHDVLNDYLKTLSLGLSNLVMIFDPSSIVIGGDI----NNLLNDKIDMLKKEVYKDNL 348 Query: 363 GPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + I +LG + +E L Sbjct: 349 FTNENNCSISIASFKE-SYLLGAAMMPIEEFLE 380 >UniRef50_C6A8T4 ROK family transcriptional regulator n=7 Tax=Bifidobacterium RepID=C6A8T4_BIFLB Length = 401 Score = 276 bits (707), Expect = 9e-73, Method: Composition-based stats. Identities = 76/379 (20%), Positives = 140/379 (36%), Gaps = 8/379 (2%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 R Q + +N+ L+ L+ A+++ +A+ ++ A+S I L + +V Sbjct: 4 RTTTEQQTLSEYNRARTLQYLHHHGIASRAQIAKALHLTPAALSKISNHLLASGAIVETG 63 Query: 62 DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL 121 S + L + + IE + + P E ++ T Sbjct: 64 ALEGKGNRRSIGLAVNARAFQVLGVKFARSLIEIGLFDLAGKPSFIRELPTVENTTIPQA 123 Query: 122 LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + + R P H + + +A+ G G + + V + E Sbjct: 124 IESLHAEIRRLLAEHP-HILAIGMAVPGPYLRDRGHTAVVSSMGQWRQVNFRAEFEHAFD 182 Query: 182 IRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + V+++ D ALA+ + N + + GIG + + + GSL + +IGH Sbjct: 183 VPVIIEQDARAGALAQYLFDPNPANENLAYYLLGEGIGLGVIDHGTVINGSLGAATEIGH 242 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 ++ +G CDCG GCLE S A+ +A + ++L + A+L A QS Sbjct: 243 VSIDVNGKACDCGNVGCLERYCSAVAI-HEAMLGNGMLATDSRLTHRE-ACAELFARAQS 300 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 G+ V+R +G N N ++I + GE L + G +R Sbjct: 301 GDGQARELVERIGTFVGYGCVTICNAFNPSRIVIGDIVAQAGEPLLQRVREVVG----ER 356 Query: 361 DEGPSVKATQIGFGQLSRA 379 ++TQI L Sbjct: 357 VIPEITQSTQIELSALPTD 375 >UniRef50_A3TWQ2 Xylose repressor, putative n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TWQ2_9RHOB Length = 405 Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats. Identities = 74/391 (18%), Positives = 136/391 (34%), Gaps = 21/391 (5%) Query: 9 QIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ--- 65 R + +L+ + +++ +AR S V++ L + Sbjct: 12 DARDATRLRVLQCIRSAGTISRTDIARALDSSPATVTSACGALLDAGLIREERRMPSENV 71 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEY-LQIDAPTPQALLSE 124 RG I E L V +I + + G F L+ P L+ E Sbjct: 72 QRGRPRVMLQINGEAFAVAGLKVAREAIVVMIVDFRGDEIGSFVSPLEASCMDPDGLVQE 131 Query: 125 IEKCWHRH---RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + + L L+L I G V+ TG V+ L + L Sbjct: 132 VRRALDAACARHGLDTARIAGLSLGIPGFVNGETGFMHWSSSVTERN-VDFAPLFRKHLP 190 Query: 182 IRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 +DND ++A AE + +F V+ +++G+G ++N ++YRG ++GH Sbjct: 191 CPTFLDNDANLVAKAEHLFGAGRGLSNFLVVTLEHGVGMGIILNGELYRGERGCGAELGH 250 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 V G +C CG+ GCLE AL + +S + ++ A ++ Sbjct: 251 MKVQFGGALCQCGQRGCLEAYVGDYALVRDTSTGQQSDAAK--------SIQDILHAARN 302 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 G+ +DR++ +G++L N +N+ + I L + + + Sbjct: 303 GDRLAREVLDRASQILGVALANLVNLFDPEHIVL----ARSRPPFDHPYTEAMLTSLRRN 358 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVE 391 +I L G L +E Sbjct: 359 TVQVDAPLPEITVRNLDEMMWAKGAAALGIE 389 >UniRef50_C5CH81 ROK family protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CH81_KOSOT Length = 386 Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats. Identities = 79/394 (20%), Positives = 166/394 (42%), Gaps = 27/394 (6%) Query: 7 NQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQT 66 + R N +L +L +Q ++ L+R+ ++ VS+I++E + V + Sbjct: 6 PKDTRIKNAITLLHILLKQDGISRVELSRITGLTKTTVSSIIKEFLAAGIVEESPTKPNG 65 Query: 67 R-GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEI 125 G + + I +TL +++ +I+ + +A + E L P ++L ++ Sbjct: 66 NVGKTPISLHIKKNAVYTLGVHLGRHNIKTVLMDASMKVLMESNGLSYKKNDPDSVLEKL 125 Query: 126 EKCWHRHRKLWPDHTIN---LALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 + + H I + + I G +DP TGV + P+ + + ++++K + Sbjct: 126 YLDINHIMEKAEKHGIKVGVIGIGIPGPLDPETGVIKCPPKFEGWINIPLGEIIQKKYKL 185 Query: 183 RVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V ++ND + ALAEKW ++ ++F I V+ GIG+ VIN+++Y+G+ G+IGH+ Sbjct: 186 PVWIENDANVAALAEKWHGGAKYLKNFVYILVNEGIGAGVVINDELYQGTHDYVGEIGHS 245 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 + G++ LE + + L Q + + + + ++ Sbjct: 246 LFYVH------GQFKYLEDLYGVDVLTSQIKSCGLNAH----------SIEDVANLLKAD 289 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 + S V SA + + + N +++LN +++ G A G + + F Sbjct: 290 NKIVYSIVRDSAKWLSIVVLNVIHLLNPQAVFIGGTMAALGNYLIQPVKEIVSQYLFGDQ 349 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 E T + ++S +G G L Sbjct: 350 E------TDVKLSEISDNAVAIGAGIYATAKWLE 377 >UniRef50_A6X1U5 ROK family protein n=3 Tax=Rhizobiales RepID=A6X1U5_OCHA4 Length = 417 Score = 276 bits (706), Expect = 1e-72, Method: Composition-based stats. Identities = 90/391 (23%), Positives = 168/391 (42%), Gaps = 15/391 (3%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 + N ++IR HN+ V+L+++ R + +ARL ++ A++NI+ EL SE ++ + Sbjct: 27 VTLGKNPERIRDHNRRVVLDVVRRHGPLGRMHIARLTHLTAQAIANIVDELVSENLLMQL 86 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 + RG + + PEG T+ + + T + V + P+ + I +P+ Sbjct: 87 GRLKKGRGQPPIQFAVNPEGAMTIGVEMGSTHMVTTVLDLSGKPRTQ-HVRPIQDVSPER 145 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 L +++ K + +P + + + + G D S P + ++ +L E Sbjct: 146 LSTQLRKEVDAVKTSFPARLLGIGVVMPGPFDIEGMSSVGPTTLPGWSGIDAAAVLSEAC 205 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 G V+V+ND A+ E+ +F +I GIG + + +RG+ +G+IG Sbjct: 206 GESVLVENDANAAAVGERLFGAGHAISNFAMIYFGAGIGLGMIQDGAPFRGAFGNAGEIG 265 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 H ++ P+G C CG+ GCLET ASL L+++ E L Sbjct: 266 HIVITPNGRSCACGQKGCLETYASLHTLREKLHAA----------GIEDTDFDALEKLHG 315 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 + P + WV +A+ + + NIL+ I L G + ++ +I G P Sbjct: 316 NRNPVLMGWVQEAADHLAPMIAMIENILDPETIILGG---MLPDAIIDDLIWHMGGLPIS 372 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYV 390 + ++ GQ + LG L + Sbjct: 373 VASRRARALPRVIRGQTGQFTAALGAASLPM 403 >UniRef50_C5ESH3 Glucokinase n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ESH3_9FIRM Length = 400 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 77/397 (19%), Positives = 155/397 (39%), Gaps = 20/397 (5%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N I+ +NK I +L+ +++ +A ++S VS ++ E+ E V++ Sbjct: 5 NQLLIKDNNKKQIYQLIEDFPGISRTQIAEQLKLSKTTVSALVDEMMQEMFVIDEGASES 64 Query: 66 TR-GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 R G + + ++ + LN ++E + ++ ++ EY D L+E Sbjct: 65 NRQGRKPNSLTVNNSTNYVIVLNWHKDNLEIALVDSAMNIVLCREY---DMKNTGDALAE 121 Query: 125 IEKCWHRHRKL--WPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL-G 181 ++ + R+ H + + + + G +D ++ + L L G Sbjct: 122 LKGYFEEFREAQCVDIHVMGVCVIVPGMIDEKHDEIISVVLPTESQGNYKISRLRSMLDG 181 Query: 182 IRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 + + ND A AE ++ IN++ G+G++ + + + G+ + Q GH Sbjct: 182 YPLAILNDTACFAYAETAFGKLDGENYIYININDGVGAAIIHDGHLLSGASGMATQFGHF 241 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 V+ +G C CG GCLE AL + + P S+ EKL L A ++ Sbjct: 242 SVDRNGYPCACGNRGCLENQIGELALPRLFEEFGLDVPKSSG---EKLLFKDLAALVRAE 298 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTII---RQTGFNPF 358 + + A +L N + + + + + G G+ +L + +Q GF F Sbjct: 299 DEDALKLMSYMAEDFAYALCNAITLFHPELVIIGGIGRKLGDRFLELLKGKMQQFGFRQF 358 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 V + + +L A V G Y+ + Sbjct: 359 -------VSDVDVVYTKLGEASVVRGAAKYYINRYFK 388 >UniRef50_C7Q516 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q516_CATAD Length = 404 Score = 275 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 80/395 (20%), Positives = 153/395 (38%), Gaps = 12/395 (3%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 + +R ++ +L +Y + ++ LARLA +S AVSN++ +L S+ V Sbjct: 8 TTRDLRRRSRATLLSCIYLGRAVSRPELARLAGMSSAAVSNVVSDLISDGLVAEAGSVDS 67 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKG----EFEYLQIDAPTPQAL 121 G P + + +++ T I + + LS E ++D L Sbjct: 68 NGGRPRTMLAARPGFGYAVGVDIGETHIHVVLFDWTLSTLATSTHEIRVGRLDPDVVVRL 127 Query: 122 LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + + + + + + + + G V P W+ V + L +L Sbjct: 128 VVSGVRSLLDSTGVPHERLLGIGIGVPGAVQEGERGVVHAPTLGWS-GVPLGDALRAELD 186 Query: 182 IRVMVDNDCVMLALAEKWQNNSQERDFCVINV-DYGIGSSFVINEQIYRGSLYGSGQIGH 240 +++DN L AE W+ ++ V+ + G+G++ + + + GH Sbjct: 187 APILIDNCARTLGQAEAWRGAGRDARRAVVALWGVGVGAAIAEGSSLAESGSSSTSEWGH 246 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 ++ G C CG +GCLE +A+ +P ++ D + A+L A + Sbjct: 247 AVIEARGRACRCGSHGCLEAYVGATAILDAYLAHPAGKPFTS--DGTEAKMAELAARATT 304 Query: 301 G-EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 G + T+ D +A +G+ + N +N++N +Q+ L G L IR+ Sbjct: 305 GADEAATATFDEAAEYLGIGVGNLINMINPDQVILAGWVGEQLGPLLMPAIREAARR--- 361 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 T+I G+L LG L V L Sbjct: 362 HALPYLFDQTRIDVGELGPGAVALGAATLPVARLL 396 >UniRef50_B5I1X5 ROK domain-containing protein n=8 Tax=Streptomyces RepID=B5I1X5_9ACTO Length = 408 Score = 275 bits (704), Expect = 2e-72, Method: Composition-based stats. Identities = 80/396 (20%), Positives = 153/396 (38%), Gaps = 26/396 (6%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 Q +R N ++ + + +++ +A ++ AVS ++ EL + + E Sbjct: 26 TQQGMRRRNLARVMHTVSAEGPLSRAAVASRIGLTRAAVSTLVDELIRSGLLEELGPERP 85 Query: 66 TR-GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGE-FEYLQIDAPTPQALLS 123 R G ++ G + V + + + Y +P+ +++ Sbjct: 86 GRVGRPGSALAVSGRGPAGIGAEVGVDHLAVCAVDLRGQVRSRAVRYGANRGRSPEPVIA 145 Query: 124 EIEKCWHRHRKLWPDHTI---NLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 E+ + + LA+A+ G V P W ++ LL + Sbjct: 146 ELASLVSQVVAEGEGEGLWPAGLAVAVPGLVARDVRTVVRAPNLDWHD-TDLGALLPQ-- 202 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + + V N+ ALAE W + DF ++ + GIG++ V++ Q+ RG+ +G++GH Sbjct: 203 DLPLTVGNEANFGALAELWLGDGTPHDFLHVSAEIGIGAALVVDGQLLRGTRGFAGELGH 262 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 V+PDG C CG GCLE A A+ + A L+P + L Sbjct: 263 VPVHPDGPRCPCGGRGCLEQYAGEEAVLRAA-----------GLEPGEDRVGLLAQHAAD 311 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 G+ + + + A+G++L +N+L+ + L G L ++ + R Sbjct: 312 GDEAVRGALREAGQALGIALTGAVNLLDPEAVVLGGALAGLAPWLLPSLRDELAR----R 367 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 GP+ + L +LG + V A L Sbjct: 368 TAGPAC---PVSVSGLGSQGPLLGAAHSVVRAVLDD 400 >UniRef50_A5FUR2 ROK family protein n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FUR2_ACICJ Length = 398 Score = 274 bits (702), Expect = 4e-72, Method: Composition-based stats. Identities = 82/398 (20%), Positives = 148/398 (37%), Gaps = 19/398 (4%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 RA +N+ +R N + ++ + ++ L++++ I +S I+ LES V Sbjct: 3 RARVNSALVRRINSARLFHMIRQNPGISQQKLSQISGIDPATISIIINNLESGGIVRRDT 62 Query: 62 DESQTR-GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYL-QIDAPTPQ 119 D R G + + P + ++V P +I ++ + + Sbjct: 63 DAPTGRAGRPTTALSLDPRAGYLAGISVEPDAIRIVISTIDGTACADLAVPGSTAPEAAI 122 Query: 120 ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 A R + + +A+ V G P W ++V L +K Sbjct: 123 AAARSGVTAALRSLRATRATLLAAGVAMPALV-STGGRIVFAPNIGWRD-LDVAENLAQK 180 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 L + V V+ND ALAE S++ DF + GIG + ++YRG +G+I Sbjct: 181 LKVPVRVENDVKAAALAEHLFGASRDIADFVYVMGRSGIGGGLYLMGELYRGPHGLAGEI 240 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH + P G C CG GC E S A+ A + A Sbjct: 241 GHMKIVPGGRACGCGGQGCFEAYVSEKAILSDLAARGHGAR----------DVASVRKAC 290 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 ++G+P + + + +GL+L N +NI++ +I L G L + N Sbjct: 291 EAGDPVARAVLAEAGRHLGLALANLINIISPRRIVLGGSLAQLAPFLLPAAMETLEANAL 350 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 + +I ++S + +G L ++ L Sbjct: 351 A----AIYRDVEIVVSEMSGSAAAMGGIALALQQFLDD 384 >UniRef50_B2V1I0 Putative transcriptional repressor of the xylose operon n=2 Tax=Clostridium botulinum E RepID=B2V1I0_CLOBA Length = 379 Score = 274 bits (701), Expect = 4e-72, Method: Composition-based stats. Identities = 79/394 (20%), Positives = 166/394 (42%), Gaps = 26/394 (6%) Query: 7 NQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQT 66 + +R NK I++ + +K+ +++ L+ ++ VS I++EL + + T Sbjct: 6 TKDLRSLNKIKIIQSILYKKQISRADLSTFTSLNKATVSVIVKELLDLRLIEESTIGDST 65 Query: 67 RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIE 126 G I + + + +++ T I+ V N + ++ + + + + + Sbjct: 66 GGRKPIILTINEDIGYVIAIDINITMIDIIVTNLSNKILSSY-SIKNEDNNFETIFNNLF 124 Query: 127 KCWHRHRKLWPDHT---INLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIR 183 H+ + + P + ++LA+ G VD + G+ + +PQ W ++++ LE + + Sbjct: 125 SLIHKIQNVMPSSIYNLVGISLAVRGVVD-LNGLIKFIPQLGWKN-IDIRSKLENEFNVP 182 Query: 184 VMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV 243 + ++ND + A+AE + D V+++D I S + N Q+ +G L + IGH ++ Sbjct: 183 IYIENDGNLSAMAEH-KLMPNYNDMLVVDIDDVITSGIICNSQLVKGFLGFANAIGHHVI 241 Query: 244 NPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEP 303 N DG C CG+ GCLE S A+ L + + + + P Sbjct: 242 NCDGKQCTCGKRGCLEQYCSNLAILSHINQSLPVK-----------DIEEFVNLVKEENP 290 Query: 304 WITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEG 363 + S +D + + + L N + ILN I L + + + F P R + Sbjct: 291 YALSTLDYFIDHLAIGLTNLIFILNCEVIVLNSYILREIPVAMQKLHEKI-FLPITRYQD 349 Query: 364 PSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 + +L + ++G + VE + I Sbjct: 350 -------LYLSKLGKKAPLIGACNICVEQFYKSI 376 >UniRef50_D2PSG4 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PSG4_9ACTO Length = 393 Score = 274 bits (701), Expect = 5e-72, Method: Composition-based stats. Identities = 88/394 (22%), Positives = 162/394 (41%), Gaps = 30/394 (7%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 + + IR N ++L L +++ LA+ +S+P VS I+ EL V + S Sbjct: 8 SKELIREINSSLVLGELR-GGLVSRTELAKRTGLSLPTVSEIVGELIGTGVVEEREIASS 66 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEI 125 G + P+ + + + +T T + + + + + + + Sbjct: 67 GGGRRPVLLGLKPDAGYVIGIKLTETRVVAVLTDLNAAIVQRATVAVANDDVDTVVRTVA 126 Query: 126 EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVM 185 K+ P + + + LA G +D +GV + + W V++ LLE++ G+ V+ Sbjct: 127 AVVKRFTAKVGPVYGVGVGLA--GMIDRASGVVRHATYSDWHD-VDLAALLEKRTGLPVV 183 Query: 186 VDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVN 244 VDND L E+W + D V+++ G+G V++ ++YRG+ G+G+ GHT V Sbjct: 184 VDNDVNTLVANEQWFGAGRGVSDVAVVSIGRGVGLGMVLDGRLYRGAGGGAGEFGHTKVA 243 Query: 245 PDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPW 304 PDG VC CG GCLE++ A+ + Q + + G+ Sbjct: 244 PDGPVCACGARGCLESLIGEPAILTATGTS---------------SIEQAVDLARGGDDA 288 Query: 305 ITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWL---NTIIRQTGFNPFDRD 361 + D +G ++ N +N+LN I L G + L +T +RQ F+ RD Sbjct: 289 ARAVFDHVGRTLGTAVGNLVNLLNPKLIVLAGEGTRASDLLLPGFDTALRQAVFDGLQRD 348 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 ++ G L++ + Sbjct: 349 L-------EVVVDDWDDEAWAQGAAGLFLGELFQ 375 >UniRef50_A9WM33 Glucokinase n=4 Tax=Micrococcaceae RepID=A9WM33_RENSM Length = 446 Score = 274 bits (701), Expect = 5e-72, Method: Composition-based stats. Identities = 85/396 (21%), Positives = 160/396 (40%), Gaps = 20/396 (5%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 R + +R N+ I+E L ++ L+R +S VSN+++ + V Sbjct: 55 RNPGSQSALRQSNQQRIVETLLNAGPLTQAELSRHTGLSTATVSNLVKIMSDGGLVSTAP 114 Query: 62 DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEY-LQIDAPTPQA 120 S G + + + G + ++V T + +A+ E L + + Sbjct: 115 TTSS--GRRATSVRLNSNGAVAVGIDVGRTHVRVAIASLGYRVIAERSIKLPLGHLAVEG 172 Query: 121 L--LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 + +++ + L + + I G +D TG P + + +LE+ Sbjct: 173 VKAAADLLQGLLHDAGLPASAVVGAGVGIPGPIDSRTGTVIQGAILPEWVGINILEMLED 232 Query: 179 KLGIRVMVDNDCVMLALAE-KWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 L + V VDN + ALA+ W +S D + + GIG+ ++ Y G++ +G+ Sbjct: 233 ALKVPVYVDNYANLGALAQVTWGVHSAVEDLVFVKIGSGIGAGLILGGSPYYGNIGVTGE 292 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 IGH ++ G++C CG GCLETVAS + + + + ++ P +TT +I Sbjct: 293 IGHATISEQGLICRCGNRGCLETVASTAIMIE----------LLSRGAPAPITTEDIIRL 342 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNP 357 + + +D + A+G ++ N N+LN I + G GE L I R + Sbjct: 343 AREKDSATLRVIDDAGQAVGRAIANVANLLNPEVIVVGGSLAELGEVLLEPIRRGLIRHA 402 Query: 358 FDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 + T + + + LG L + Q Sbjct: 403 V----PVVGETTHLVMSSMGNRAEALGGAALVFQHQ 434 >UniRef50_C1XPR1 Transcriptional regulator/sugar kinase n=14 Tax=Meiothermus silvanus DSM 9946 RepID=C1XPR1_9DEIN Length = 777 Score = 273 bits (700), Expect = 5e-72, Method: Composition-based stats. Identities = 71/395 (17%), Positives = 137/395 (34%), Gaps = 22/395 (5%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + +++ N+ ILE L + ++ LAR ++ +S+++ +L SE V++ D Sbjct: 384 RKGDPLEMKRINRRAILEALKGSRSLTRAELARRLGLTKSTISSLMDQLVSEGLVLSRGD 443 Query: 63 E---SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ 119 G + P G L + + + + E+ Sbjct: 444 TLRPKSQLGRPGVEVGLNPAGAVALGAELGVENSVVLAVDWTGTLLFREEWGADPRTPLS 503 Query: 120 ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 L + + + P+ + L LA+ G VD G P W V L+ + Sbjct: 504 ERLERLTQVTRHALQRHPE-ALGLGLALPGVVD-ARGWLHYAPNLGWRD-FSVAEALQAR 560 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 L V ++ND A E + Q + + + G+G V + RG+ G++G Sbjct: 561 LPFPVHIENDANSSAAGEVFFTPRQGQ-LAYLMLGTGLGVGLVHAGTVLRGANGAFGEVG 619 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 H + C CGR CLET SL A+ + L + +++ Q Sbjct: 620 HW-LGSSPKRCRCGRVSCLETEVSLRAMLEHYHA----------LGGKAKDFWEVLKQAQ 668 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 +G + A+G + N + ++ L G + + + + F Sbjct: 669 TGHRLAVESLAELGRALGRLIANLAVAYDPERVVLGGAGAEAWDYLQQPLRQAVEEHAFL 728 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 R + ++ +G L + + L Sbjct: 729 R----QHQRLEVQPSLFGHLAPAMGAAALVLHSFL 759 >UniRef50_Q024A9 ROK family protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q024A9_SOLUE Length = 387 Score = 273 bits (700), Expect = 6e-72, Method: Composition-based stats. Identities = 73/394 (18%), Positives = 156/394 (39%), Gaps = 19/394 (4%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 +++ +R N+ ++L L+ ++ +++ LAR + + +S I+++L E V+ Sbjct: 10 GASSEVVRDINRRIVLNLVRTRQPISRADLARASGLQRSTISLIVEQLIEENWVLEGPTG 69 Query: 64 SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLS 123 RG + + + +++ P +A+A K + + P+ L+ Sbjct: 70 RLPRGRRPTFLRLN-DDRVIIGVDIRPIQTTVALADANG--KFTSQEVMSTPGDPKLALT 126 Query: 124 EIEKCWHRHRKLWPDHTI-NLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 ++ R + I + +++ G+ D + P WT ++++ + E+ G+ Sbjct: 127 QLIAAIKRIKSTCRGKMIEGIGISLPGRFDHSSNRLVFAPNLKWTD-IDIRDPIVEQTGL 185 Query: 183 RVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V ++N LAE W + E R+ V+ V GIG+ + N + RG +G+ GH Sbjct: 186 DVELENAANACVLAEVWFDRVHECRNLVVVTVSEGIGTGVLANGALVRGLSGMAGEFGHV 245 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 ++P G C CG GC E AS A + + T L+ L++ G Sbjct: 246 PLDPTGPTCGCGSRGCWEIFASNRAALRYY--------LETGSTETGLSFTDLLSRADQG 297 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 + +D A+ +G + + L +I + G + + + I + Sbjct: 298 DSRAEKALDMMAHYLGRGMRMIVAGLAPERIVVVGDLTRSWQRFGSVIEAEIQAQVLPGG 357 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 P ++ ++ G L ++ Sbjct: 358 VVP-----KLVPAFEDGMARLRGTVALVLQKHFS 386 >UniRef50_B5GK61 ROK family protein n=2 Tax=Streptomyces RepID=B5GK61_9ACTO Length = 402 Score = 273 bits (699), Expect = 8e-72, Method: Composition-based stats. Identities = 84/386 (21%), Positives = 157/386 (40%), Gaps = 11/386 (2%) Query: 15 KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTW 74 + ++++L+ ++ L + ++ P +SNI++ L + V D TRG Sbjct: 8 RALVVDLIRSSGPISRVELVKSTGLTQPTISNIVRRLIEDGVVRETGDTVATRGKPRSLL 67 Query: 75 LIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRH-- 132 +I + + +++ ++ C V + G + P+A+ + + Sbjct: 68 VINSHAAYGIGIHLATDALTCVVTDTRGGTVGRLLVAAPPSGDPEAVTEALAGLYRDVVA 127 Query: 133 -RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCV 191 L LA+ G VD G +P T + + L LG+ V+VD+D Sbjct: 128 GLGLPARGVAGLAVVGPGPVDVAQGSFLALPGRSPATGLALAPALGGALGVPVLVDSDAS 187 Query: 192 MLALAEKWQNN-SQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVC 250 + E W S+ R F + ++ GIGS V++ ++RG+ +G++GHT V G C Sbjct: 188 AATVGEFWGRQVSRARTFGCLYMNSGIGSGVVLDGALHRGASSNAGKLGHTAVVRGGREC 247 Query: 251 DCGRYGCLETVASLSALKKQARVW--LKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSW 308 CG GCLE A+ L ++AR L + + DP L A G+ + Sbjct: 248 PCGNRGCLEQYAAPRVLVERARALPGLARRLRIAEGDPVDRAFDVLARAALYGDEAARAL 307 Query: 309 VDRSANAIGLSLYNFLNILNINQIWLYG-RSCAFGENWLNTIIRQTGFNPFDRDEGPSVK 367 +D SA + + N+ +++ + L G A G +++ I + + F R V Sbjct: 308 LDESAELLAEAAVTLTNLWDLDTLVLAGPGFAAAGSLYVSAIRARLAASAFTRG----VH 363 Query: 368 ATQIGFGQLSRAQQVLGIGYLYVEAQ 393 + R +G L ++ Sbjct: 364 EVTVDLSSNPRDAAAIGGAALVLQGS 389 >UniRef50_A8RG91 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RG91_9CLOT Length = 403 Score = 273 bits (698), Expect = 1e-71, Method: Composition-based stats. Identities = 73/398 (18%), Positives = 150/398 (37%), Gaps = 16/398 (4%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 N + I+ N+ ++L LL ++ ++ LA L+Q+ V+NI+ + V + Sbjct: 6 RGFNQENIQDMNRTLLLNLLRKEGICARAHLANLSQLKQATVTNIVSDFIDWGLVKEVGF 65 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEY-LQIDAPTPQAL 121 +G S I + L + + + + N + L ++ P Sbjct: 66 LVGNKGRRSIGISINNDDFGVLAIRLARKNYTVGIFNLSGRLLDKKRVELDVNQPPRVTF 125 Query: 122 LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + I + R I + +AI G G + M + ++ L++ Sbjct: 126 EAIIHEAGELIRSSESRKIIAIGMAIPGPYSEKRGRIELMTGVLGWNEIPIQEKLQDIFK 185 Query: 182 IRVMVDNDCVMLALAEKWQNNSQERD--FCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 I V ++ D ALA+ W N+ ++ I V G+G+ + N ++ +G + +G++G Sbjct: 186 IPVFLEQDANAGALAQYWHNDEDYKNGVVVYIAVGQGVGAGIINNGELLKGCIGVAGEVG 245 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 HT + +G C CG YGCLE S A K+ L+ + Q+ + Sbjct: 246 HTSICYNGPRCACGNYGCLENYCSSIAFTKEVNRVLRPEIEY--------NFRQVSQLLR 297 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 G+ +T + + + + + N +N N + I + + L +++ + + Sbjct: 298 DGDQVVTDIFLDACDKLSVGIVNIINSFNPSVIVIGDEMS----HILPSVMLERVKSNVK 353 Query: 360 RDEGPSV-KATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 P + I +S G + + Sbjct: 354 ERVLPEIYANMNITMSVVSNDSMAHGAAIVAINDIFNH 391 >UniRef50_Q9KEZ9 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus halodurans RepID=Q9KEZ9_BACHD Length = 388 Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 77/389 (19%), Positives = 156/389 (40%), Gaps = 23/389 (5%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGH 69 I+ N+ ILE + ++ ++S L+++ ++ VS+ + L E ++ + G Sbjct: 9 IKKMNRRAILEKIIEKQEISRSDLSKITNLNKVTVSSQVASLLEEHLIIEKQYAESSGGR 68 Query: 70 SSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCW 129 + +TL +++ ++ + N + + E ++ +++E+ Sbjct: 69 KPILLTLNENAAFTLGIDLDIKTLTFMLCNLKGAVIKK-EQWKLANVDFDDVVNEMISLI 127 Query: 130 HRHRKLWPDH---TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMV 186 K P + + + IHG VD P W+ V VK +E+ + I V+V Sbjct: 128 QSFLKDIPASKYGVVGIGIGIHGIVDNDE-TIAFTPGHHWSN-VNVKQPIEQAVNIPVVV 185 Query: 187 DNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPD 246 +N + ALAE ++ + + I+ G+G +++ IY+G +G++GH I+ P+ Sbjct: 186 ENSTNLCALAENVVSDHEADNLLCISSFSGVGMGLIVHNAIYKGFHGYAGEVGHMIIVPE 245 Query: 247 GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWIT 306 G C CG GC E AS AL ++ K E + ++A ++G+ Sbjct: 246 GKPCRCGNKGCWELYASEKALYQEISESTKR---------EHVDRDVVLALIEAGDEETL 296 Query: 307 SWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSV 366 +D+ L L N +N N I + L I + + + Sbjct: 297 KKLDQFIYYFSLGLNNIINSYNPETIVISSGLM----PHLPNIEHKIQSHLHSKISHYKT 352 Query: 367 KATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + L + LG ++ ++ L Sbjct: 353 ----LKISNLGKEACALGACFIGIKQFLE 377 >UniRef50_Q97D10 XylR transcriptional regulator n=1 Tax=Clostridium acetobutylicum RepID=Q97D10_CLOAB Length = 385 Score = 272 bits (697), Expect = 1e-71, Method: Composition-based stats. Identities = 81/388 (20%), Positives = 148/388 (38%), Gaps = 19/388 (4%) Query: 11 RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHS 70 ++ NK IL LLYR++ K ++ +S+P V + + EL E V S T G Sbjct: 6 QNSNKGKILNLLYRKRELTKLDISNEIGVSVPTVISNVNELIREGFVEESGVASSTGGRK 65 Query: 71 SGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL---LSEIEK 127 P + +++ P + N L K + E+L + +++ +S I K Sbjct: 66 PIIVSFIPNSRYAFGVDINPYMARVVLTNLDLEIKYDVEFLIEELKDIKSIMKRISLIVK 125 Query: 128 CWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMV- 186 K+ + + ++ G VD V + L E + + Sbjct: 126 EALEFTKIDEKKVLGIGFSLQGTVDEENLVLKRAINIGVKDWDF--KLFENLFQFPLFIE 183 Query: 187 DNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPD 246 + K +ER+ I+V G+G+ VI Q+Y+G +G++GH + P Sbjct: 184 NEANAAALAELKIGIAKEERNLVYISVSSGLGTGIVIEGQLYKGKNKRAGEMGHMTLVPH 243 Query: 247 GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWIT 306 G +C CGR GC E AS AL + D + Q Sbjct: 244 GKLCRCGRKGCWEMYASQKALLDEFNEL---------SDVKVTKLEQFFNLIMIKNKVAE 294 Query: 307 SWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSV 366 ++ N + + N + I + + I L G + + +L+++ + FD +E + Sbjct: 295 KCLNNYLNNLASGIQNIVLIFDPHYIVLGGEISGYSDVYLDSLKDKI----FDENEFYNR 350 Query: 367 KATQIGFGQLSRAQQVLGIGYLYVEAQL 394 ++ +L R +LG L ++ Sbjct: 351 GDFKLFPSRLKRNSSILGAALLPIQKAF 378 >UniRef50_C6LF86 Putative xylose repressor n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LF86_9FIRM Length = 381 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 80/400 (20%), Positives = 144/400 (36%), Gaps = 35/400 (8%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 N + IR N +L + +++++A ++ VS I+Q L + + Sbjct: 3 TGNQELIRDINTQSVLRTIITHGAISRASIASELGLTKATVSAIVQVLLDRGIIFEAESS 62 Query: 64 ----SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ 119 +G + + + + +++ +I AN G Q P Sbjct: 63 DTAPEGRKGRKPIFLQLNKDCGYVVAIDLATENITLMTANLLG---GNCRLTQFPTPEKT 119 Query: 120 ALL-----SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKY 174 LL I++ + K + +AL IHG V + ++ Sbjct: 120 ELLLPLLKERIDRAINALPK-TRYGLLGIALGIHGVVHHNKIIFLPYSSFG---DIDFVS 175 Query: 175 LLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYG 234 L + G+ V+++N+ + AL E W + + I+V GIG+ ++ Q+ +G Sbjct: 176 RLGDIYGVPVVMENEANLSALGE-WAHCHDTNEMLYISVHSGIGAGIIMKNQLVKGKNGY 234 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQL 294 +G+ GHTI+ DG C CG +GCLE AS AL + + Sbjct: 235 AGEFGHTIIEVDGRPCPCGNHGCLEQYASERALFAELSAQ----------KGYPVNAEVY 284 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTG 354 ++ G+P + + + + + N LN N + I L + I Q Sbjct: 285 GRLYRQGDPAAVRAMQQFIKYMSVGINNLLNTFNPDIIVLNSSLTMCHAGLCDDIAAQLH 344 Query: 355 FNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 N D ++ L +LG YL E L Sbjct: 345 NNMKDYC--------RLVPSTLQDTAVLLGGVYLIRERFL 376 >UniRef50_C1YJZ1 Transcriptional regulator/sugar kinase n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YJZ1_NOCDA Length = 396 Score = 271 bits (694), Expect = 3e-71, Method: Composition-based stats. Identities = 77/394 (19%), Positives = 163/394 (41%), Gaps = 15/394 (3%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + +R N+ ++++L R+ ++ LAR +S +VSNI++ L + V+ Sbjct: 7 TPGSQSALRRANERRVVDVLRREGTRTQAELARATGLSAASVSNIVRGLRAAGTVLV--R 64 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 ++ + G + + + + ++ T S+ V ++ + E A + + Sbjct: 65 DTSSNGRRAKAITLVRQPGAVVAVDFTADSVRVAVGDSDGNMLAREEIGYDVASDAERGV 124 Query: 123 SE---IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + + ++ ++ +I G +DP TG + P L E+ Sbjct: 125 RRAAWLAETILLRSRVDRGTVSSVVASIPGPIDPGTGEVGGISCLPRWAGFRPARELTER 184 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQERDFCV-INVDYGIGSSFVINEQIYRGSLYGSGQI 238 LG+ V+ +ND + LAE+ + + V + ++ G+G+ +++ Q++RG+ +G+I Sbjct: 185 LGLEVLAENDANLAVLAEQHRGAGVGAEHVVHLVLNDGVGAGIMMSGQLFRGAGGTAGEI 244 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH ++P G VC CG GCLET S L Q P+ + ++AA Sbjct: 245 GHIALDPRGHVCRCGNRGCLETFVGASYLLDML-----PQNTDVARGPDPVRIPDMVAAA 299 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 G+P + + A+G N+ N +++ + G G+ L+ + R Sbjct: 300 LEGDPGSRRIIAEAGTALGQGTAIVANLFNPDRVVVGGELAQAGDLLLDPMRRSMELGSL 359 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEA 392 ++ ++ L R + G + + Sbjct: 360 S----SALDRLELVPSALGRDASLYGALRMAAQQ 389 >UniRef50_Q1GMG9 ROK domain protein n=6 Tax=Rhodobacteraceae RepID=Q1GMG9_SILST Length = 435 Score = 271 bits (694), Expect = 3e-71, Method: Composition-based stats. Identities = 81/390 (20%), Positives = 148/390 (37%), Gaps = 21/390 (5%) Query: 11 RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE---SQTR 67 R + IL+++ Q+ + +A+ +S V+ I EL + + I E R Sbjct: 45 RESGRQQILDVIRAQESIARIDIAQATGMSPATVTAITAELLAAGLIEEIAPELAPGARR 104 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ-ALLSEIE 126 G + L V+ I + + E + P L ++I Sbjct: 105 GRPRVALRLRGAARLIAGLKVSHHVISTVITDFVGQELASHEMPLVQGTMPVPELCAQIR 164 Query: 127 KCWH---RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIR 183 + + + L + G +D G V + +L Sbjct: 165 RALDLTCEKGGFSIEDLSGVGLGMAGMMDADRGFIYWSSSLEERN-VAFTAAISAELPCP 223 Query: 184 VMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 V +DND ++A AE + +F VI +++G+G VI++QIYRG+ ++GHT Sbjct: 224 VFLDNDANLVAKAEHLFGEGRTCDNFIVITIEHGVGMGIVIDQQIYRGTRGCGAELGHTK 283 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 V+ +G +C CG+ GCLE AL ++A + S+ T A L + ++G+ Sbjct: 284 VHLEGALCQCGQRGCLEAYVGDYALLREANISSGSE--------RHTTIASLFQSAENGD 335 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDE 362 S +DR+ + L N +NI + ++I L G +F + + +I + D Sbjct: 336 VVAKSILDRARRMFAMGLANVVNIFDPSKIILAGARLSFDYLYSDKLIEEMRQWVVQVDA 395 Query: 363 GPSVKATQIGFGQLSRAQQVLGIGYLYVEA 392 ++ G +E Sbjct: 396 PLP----EVMVHDWGDLMWAKGAAAYALEE 421 >UniRef50_C7R1E2 ROK family protein n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R1E2_JONDD Length = 402 Score = 271 bits (693), Expect = 4e-71, Method: Composition-based stats. Identities = 78/395 (19%), Positives = 150/395 (37%), Gaps = 21/395 (5%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + +R N+ I++ + + + LA +S VSNI++EL + V Sbjct: 7 TPGSQSSLRESNRTRIIDAIKQFGGLTQVELAGATGLSAATVSNIVKELTTLGVVQTSPS 66 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 G + +A + + +A++ S + + A L Sbjct: 67 TRS--GRRAQHVTLARTPGLVGAVQFGLRHMRVALADSSGSLLSDHQLPLGADHRADAGL 124 Query: 123 SEIEKCWHRHRKLWPDHTI---NLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + + + +A+A+ V+ +G+ + V V +++ E+ Sbjct: 125 DRAALLIADMMETFDAESAELQGVAVALPAPVEHSSGLITSPGIMRGWDNVAVAHVMSER 184 Query: 180 LGIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 +G V V N M AL E Q + + I V IG++ +IN +++ G+ +G+ Sbjct: 185 IGKPVYVANSSNMGALGELRQGAAAGAQHTLYIQVGQRIGAALIINGELFWGANGSAGEF 244 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GHT +PDG +C CG GCLETVA + L + RV +T ++ Sbjct: 245 GHTTTDPDGQICRCGNRGCLETVAGGNVLLEALRVSHGV-----------MTLKDMMRYA 293 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 + G+ + + AIGL+ N N+ N ++ + G G L+ + Sbjct: 294 RDGDLGCIRAIADAGRAIGLAAANLCNVFNPERVVVGGDLAHTGSILLDPLRETIER--- 350 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 + + I G L +++G ++ Sbjct: 351 -FSLPSTAECITIVPGSLGADAEMIGTITYALDRS 384 >UniRef50_P50456 Protein mlc n=167 Tax=Gammaproteobacteria RepID=MLC_ECOLI Length = 406 Score = 270 bits (691), Expect = 6e-71, Method: Composition-based stats. Identities = 89/393 (22%), Positives = 171/393 (43%), Gaps = 18/393 (4%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID-DESQT 66 QI+ N + L+ + ++ L+RLAQ++ +++ I++E+ V ++ E+ Sbjct: 11 DQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEIKEAGN 70 Query: 67 RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFE---YLQIDAPTPQALLS 123 RG + ++ E L L ++ I + + E L+ D P ++S Sbjct: 71 RGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLLDRIIS 130 Query: 124 EIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIR 183 I++ + RH+K + ++A+ + G +D G+ MP + + LE+ G+ Sbjct: 131 HIDQFFIRHQKKL-ERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQHTGVP 189 Query: 184 VMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 V + +D +AE S+ RD + +D+ +G+ + + + +IGHT Sbjct: 190 VYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVEIGHTQ 249 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 V+P G C CG +GCLET+AS+ ++ + A++ L +Q +S+ L + LT L A G+ Sbjct: 250 VDPYGKRCYCGNHGCLETIASVDSILELAQLRL-NQSMSSMLHGQPLTVDSLCQAALRGD 308 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI---IRQTGFNPFD 359 + +G L +N+ N +I + + I IRQ + Sbjct: 309 LLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQQALPAYS 368 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEA 392 + SV++TQ F L +A Sbjct: 369 QH--ISVESTQ--FSNQGTMAG----AALVKDA 393 >UniRef50_UPI00017899E8 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017899E8 Length = 386 Score = 270 bits (690), Expect = 8e-71, Method: Composition-based stats. Identities = 71/396 (17%), Positives = 171/396 (43%), Gaps = 22/396 (5%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 + ++ N+ + +++ ++ +++ +A+ +S VS I+ EL E V ++++ Sbjct: 5 DQDFMKRQNRLTVFQIIKNEQPISRAAIAKQTGMSPTTVSRIVSELTEEGYVHETEEQAS 64 Query: 66 -TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 RG S + ++ + + + + + + T ++ Sbjct: 65 AGRGRKSSLIRLLDTAVISIGVELDRHQANIGFIDVQGNVLCSGSFSRSSDETADVTVTR 124 Query: 125 IEKCWHRHRK---LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 I + + + + + + G +D G+ Q W V + L+E G Sbjct: 125 IAETIEELIAECDIDRRRVVGIGVGLPGIIDVDAGIVNFSVQLGWKN-VGLAERLKELTG 183 Query: 182 IRVMVDNDCVMLALAEKWQNNSQERDF-CVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 ++ +VDN+ + ALAE+ + ++ + ++ G+GS+ ++ +IYRG +G+IGH Sbjct: 184 LQAVVDNELKVKALAEQLKGSAYGSNRTVLLGFGNGVGSALILEGEIYRGVTNSAGEIGH 243 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 T V+P+G++CDCG+ GCL+T ++ +L +A + T +L A ++ Sbjct: 244 TTVDPEGMMCDCGKAGCLQTYINIPSLLSEASKIKPVR-----------TIEELFAERRA 292 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 G W + +DR+ + +++ N +++ N + + L G + + + + + Sbjct: 293 GTRWASYLIDRALAYMAITINNVVSMYNPDSVILSGEFL----DKFPEVYEEITDLCYSQ 348 Query: 361 DEGPSVKAT-QIGFGQLSRAQQVLGIGYLYVEAQLR 395 ++ + I +L +G G + + + Sbjct: 349 YIWEPLQDSFSIVRSELHEHGVTIGSGLVAQDRYFQ 384 >UniRef50_C1F498 ROK family protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F498_ACIC5 Length = 402 Score = 270 bits (690), Expect = 9e-71, Method: Composition-based stats. Identities = 76/394 (19%), Positives = 156/394 (39%), Gaps = 20/394 (5%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 +++ R N+ ++LE++ ++ +++ LAR++ + VS I+++L E + Sbjct: 13 SSETARRINRDILLEIIRARQPISRADLARVSGLQRSTVSQIIEQLIEELWIREGAVARL 72 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEI 125 RG ++ + L ++ P V + E + P + + I Sbjct: 73 PRGRRPTMLVLNED-VVVLTADLHPRKAAIAVIDLNGRVLSHAELSL--SHDPAKVATAI 129 Query: 126 EKCWHRHRKLWPDHTI-NLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184 +C R R+ P+ + + +++ G+VD T P W +++ L + L + V Sbjct: 130 LECMRRLRQAHPEKSFRGVGVSLPGRVDSQTQRLIFAPNLHWPD-FDLRQALAKGLRMPV 188 Query: 185 MVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV 243 ++N +E W Q ++ +I V GIG + N Q+ G +G+ GH + Sbjct: 189 EMENAANACLTSELWFGRMQGVQNAVLITVSEGIGGGILANGQLVTGQNGMAGEFGHISL 248 Query: 244 NPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEP 303 +P G C CG+ GC ET AS A + + + ++ L+A P Sbjct: 249 DPRGPRCGCGQRGCWETFASCKAALRHYQESSGAS--------RRIAYQDLLALGAEKNP 300 Query: 304 WITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEG 363 + A IG L + L+ + + G + N + +R+ + Sbjct: 301 HAVGALTEQARQIGRGLRLVIASLSPELVLIAGEVTSAW-NLVAPALRKEMEAQWLGGTM 359 Query: 364 PSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 P ++ T A ++ G + ++ + I Sbjct: 360 PRIEPTFDS-----DAARLRGAAAMLLQRRASAI 388 >UniRef50_D1BD00 Transcriptional regulator/sugar kinase n=4 Tax=Actinomycetales RepID=D1BD00_SANKS Length = 395 Score = 270 bits (690), Expect = 9e-71, Method: Composition-based stats. Identities = 85/383 (22%), Positives = 152/383 (39%), Gaps = 18/383 (4%) Query: 18 ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIA 77 + +LL + ++ LA + + ++ + L + V + S T G T+ + Sbjct: 19 LFQLLRDGQPRTRAELAAVTGQARSTIAARIDLLMASGLVAPAGEASSTGGRPPATFAFS 78 Query: 78 PEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRH---RK 134 P L +++ T V + + E E A P +L + + Sbjct: 79 PAARVVLAVDLGATHAHLAVTDLASTVLAELEAPIAIADGPDVILGWVAQTGEELVLSTG 138 Query: 135 LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLA 194 D +++ + + G V+ TG P P V+V L +LG V+VDND ++A Sbjct: 139 RTLDDLVSVGVGLPGPVEHSTGRPINPPIMPAWDDVDVPGGLSARLGASVLVDNDVNIMA 198 Query: 195 LAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV-NPDGVVCDCG 253 L E D + V GIG+ + + + RG+ +G IGH V + V C CG Sbjct: 199 LGEHRTEWPGVSDLLFVKVATGIGAGIISDGALRRGAQGAAGDIGHVAVSDRSEVPCRCG 258 Query: 254 RYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSA 313 GCLE VAS A+ Q + S ++A ++G+ + + V ++ Sbjct: 259 NLGCLEAVASGQAVAAQLAATGLAATSSN----------DVVALVRAGDLYASRAVRQAG 308 Query: 314 NAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGF 373 IG L +++LN + I + G + GE+ + I + R + + +I Sbjct: 309 RDIGTVLAGCVSLLNPSMIVVGGVVASSGEHLIAGIRE----VVYRRSLPLATQHLRIVA 364 Query: 374 GQLSRAQQVLGIGYLYVEAQLRQ 396 + VLG + V+ L Sbjct: 365 SRTGNRAGVLGASAMAVDHVLSS 387 >UniRef50_B8FTN1 ROK family protein n=3 Tax=Clostridiales RepID=B8FTN1_DESHD Length = 406 Score = 270 bits (690), Expect = 9e-71, Method: Composition-based stats. Identities = 68/388 (17%), Positives = 146/388 (37%), Gaps = 14/388 (3%) Query: 16 CVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWL 75 IL L+ + KS LA++A + + ++ ++ LE ++ + T G + Sbjct: 20 KKILGLILHKGGMTKSQLAKVAGLKLTTLNRMMLPLEKADLILPTETGESTGGRKPVIYD 79 Query: 76 IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRH-RK 134 + P + + ++++ + + N + + + +PQA L+ I R K Sbjct: 80 VNPRRYYVIGIDISRLYSQVVLTNLKMELIEKDRFDMDRNSSPQATLNRILDWIGRVMEK 139 Query: 135 LWPDHTINLALAIHGQVDPVTGVSQTMPQAP--WTTPVEVKYLLEEKLGIRVMVDNDCVM 192 + I + + G +D +G+ + +K ++EE+ G+ V++DN Sbjct: 140 RGHGYVIGVGIGTVGPLDRQSGIILNPENFEAQGWENIPLKAIVEERTGLPVIIDNGANG 199 Query: 193 LALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCD 251 LAE + + + +N GI + + + + R H +++ +G C Sbjct: 200 AVLAETRYGSGKGMKSVIYLNCGVGIRTGVISSGTLVRTINDADDTFAHMVIDVNGKPCH 259 Query: 252 CGRYGCLETVASLSALKKQ-ARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVD 310 CG GC+E +S+ A+ + A + + ++ +L + + + Sbjct: 260 CGNQGCVERYSSIYAIMEALAEEMPQGKDRRNHKADRPVSYLELCREAEENDTIARQVLQ 319 Query: 311 RSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQ 370 +A +G L NF+ +LN + L G + + + P K Sbjct: 320 NAAVRMGTGLANFIQLLNPGLVVLSGPLILHSQLFYEVCVEAAKRRR------PWDKGGH 373 Query: 371 IGFGQLS---RAQQVLGIGYLYVEAQLR 395 + F + +G L VE L Sbjct: 374 LVFSRGGAFEENAISIGAAALVVEHYLE 401 >UniRef50_D0GID9 Putative xylose repressor n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GID9_9FUSO Length = 398 Score = 269 bits (689), Expect = 1e-70, Method: Composition-based stats. Identities = 86/395 (21%), Positives = 169/395 (42%), Gaps = 13/395 (3%) Query: 5 INNQQIRHHNKC--VILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 I +++IR N+ ILE + + +++ LA+ +++ A+S +++L + ++ Sbjct: 4 IESKKIRKLNRTDYRILEKVMKDSEVSRTDLAKEMELTSAAISKAIKKLMLQNIIMEHAT 63 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 T G + ++ E + +N+ I ++ + + T + +L Sbjct: 64 LESTGGRPRKSLIVNKEYKKIIGVNLGAGFINIVASHLNGEII-QIRQRKFVYKTQEKVL 122 Query: 123 SEIEKCW-HRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + + K + I + LA HG VD G P W ++++ LE K Sbjct: 123 DLLYEGISDMVEKFGEESIIGIGLATHGLVDRKKGTVIFSPHFKWK-KLDIRRELERKFN 181 Query: 182 IRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 ++V+V+ND + AE ++F ++ + G+G++ +N +I+ GS Y +G++GH Sbjct: 182 LKVIVENDVRAMLTAEHMYGCAGNMKNFMLLYIRNGVGAAIFLNGKIFEGSNYSAGEVGH 241 Query: 241 TIVNP-DGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 IVN + C CG++GCLET S AL + L+ + EK+T ++ + + Sbjct: 242 FIVNEKSTIQCRCGKFGCLETECSEQALINKVVWELEKK--DKNESKEKITIDKIYSRSK 299 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 E S V +A G + N LNIL+I+ + + G + ++N + + Sbjct: 300 HKEEPYYSIVKEAAYETGKVIGNILNILDIDNVVVAGDIIMTEKLYMNNFRKGVDRMILE 359 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 K +I L + G L Sbjct: 360 DFN----KKVKIVSSALDDMIGIYGAISLVTSNLF 390 >UniRef50_UPI0001C35AB4 xylose repressor protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35AB4 Length = 401 Score = 268 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 84/398 (21%), Positives = 174/398 (43%), Gaps = 25/398 (6%) Query: 11 RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ---TR 67 + N+ ILE +YR ++ +A +I+ V+ + L SE V + + S + Sbjct: 8 KASNRSRILECIYRNAPIARTDIAEETEITPATVTMNVTTLISEGFVRELGEVSTDEASS 67 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEY---LQIDAPTPQALLSE 124 G I P+ +++ L T ++ + + + + ++ A++ Sbjct: 68 GRKRVLIDIIPDRAYSIGLEFTQKALVICITDLKGRIRFQRTEPFNEELAGRITDAIIGG 127 Query: 125 IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184 ++ + D + + A+ G ++ S + W + +E++L + + Sbjct: 128 VKDLVAE-SGISWDEIVGIGAAVPGHMNGSA-SSLITNRKTWQNFDPKR--IEQELPLPI 183 Query: 185 MVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV 243 + +N+ +AL E + + D F +V G+ + V++ +++ G Y +G+IGHTIV Sbjct: 184 VCENNARCMALGEYLFSPQESPDSFAFFHVGMGMFCASVVDGEMFLGENYVAGEIGHTIV 243 Query: 244 NPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQP----VSTQLDPEKLTTAQLIAAWQ 299 + G C+CG+YGCL+T AS + L + AR+ ++ P S D ++T + A+ Sbjct: 244 SEGGRRCECGKYGCLQTYASENHLIRNARLLYRNTPNTILRSLVSDDSQITIETITTAYS 303 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGE---NWLNTIIRQTGFN 356 G+P I ++ + +G+++ N I N +I+L+G+ + ++ I RQ F Sbjct: 304 MGDPVIGMYIAEALKYLGITISNIAIITNPGKIFLHGQLFDNQDIQNELMDYIERQLIF- 362 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 DR +V+ G +G L + Sbjct: 363 -VDRTYAGNVEILPYGAAD-----GAVGASALAILRFF 394 >UniRef50_Q67KQ9 Transcriptional repressor n=1 Tax=Symbiobacterium thermophilum RepID=Q67KQ9_SYMTH Length = 391 Score = 268 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 75/392 (19%), Positives = 150/392 (38%), Gaps = 17/392 (4%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M N + ++ N+ +L + + ++ LA L +S PAV+ I+++L V Sbjct: 1 MPRPANARLMKQLNRQAVLSAIRDRGPISRVELAALTGLSQPAVTAIVRDLLDLGLVEEK 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFE-YLQIDAPTPQ 119 + G L P + L + + + +A+ + + E E L D P Sbjct: 61 GLGQSSGGRPPIMLLFNPAARFVLAVCLEGERLWGGLADLSGALQVEAEGVLSPDPHDPA 120 Query: 120 ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + + + + +A+ + G + G P W V ++ L + Sbjct: 121 RSVCDFLQGLIDRSGVEASRLAAVAVGVPG-IAHTEGTVSHAPSLGWWQEVPLRDRLRQC 179 Query: 180 LGIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 G+ V+V+ND ++AL E +Q + +++V GIG+ +I+ ++RG+ +G++ Sbjct: 180 FGVPVVVENDVNLMALGEYFQGAGVGVANLALMHVSEGIGAGILIDGNLFRGARNAAGEV 239 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 G+ + P +G E S A+++Q + L P +L Sbjct: 240 GYLPLGPLSPRRPQ-DFGLFELHYSSRAIRQQLQAALPEAPGDDGRPVRRLR-----ELA 293 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 ++G PW S + ++ + ILN + L G + G L+ + R Sbjct: 294 EAGLPWARSLFGDALRHWAHAVASITCILNPELVLLAGDAVDCGREGLSEVNRIVADLVP 353 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYV 390 D +I F L + G + + Sbjct: 354 DPP--------EIRFAVLGSRAALTGAVAMAL 377 >UniRef50_B0RFZ3 Putative ROK-family transcriptional regulator n=2 Tax=Clavibacter michiganensis RepID=B0RFZ3_CLAMS Length = 444 Score = 268 bits (687), Expect = 2e-70, Method: Composition-based stats. Identities = 75/415 (18%), Positives = 151/415 (36%), Gaps = 24/415 (5%) Query: 1 MRACINNQQIRHHNKCVILELLYRQ-KRANKSTLARLAQISIPAVSNILQELESEKRVVN 59 MR N I +N+ V+L+ + R + A++S +A +S V+N+ + L E V Sbjct: 24 MRRGTNLPAIGGYNRTVVLDAVRRAAEGASRSEIAERTGLSAQTVTNVSRRLIDEGLVRE 83 Query: 60 IDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ 119 + G + G + + +++ P I + + + A P Sbjct: 84 GGTVIRGPGKPRTLLHLVAGGRFAVGVHMDPAVITSVLLDLEGTVLRHVSSPTPSASRPD 143 Query: 120 ALLSEIEKCWH---RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 +++ + + + + + LA G +D G+ P P V ++ L Sbjct: 144 EVVALVARLVDGLIAGAGVDRGAVLGVGLAAPGPIDVGAGLVLDPPMLPHWRHVPLRSAL 203 Query: 177 EEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 G+ V+++ D A+AE W R + G G+ V+ + RG+ +G Sbjct: 204 STATGLPVLLEKDVTAAAVAELWFGPGDRRHLAFVYYGTGFGTGLVLGGEPVRGASSNAG 263 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQA------------RVWLKSQPVSTQL 284 GH +V G C CGR GC+ + + AL +QA L+ S Sbjct: 264 DAGHIMVAARGRRCTCGRVGCVGELITPHALVRQAVEGGVLRAGDVSDAALEEAAASGDA 323 Query: 285 DPEKLTTAQLIAAWQSGEPW---ITSWVDRSANAIGLSLYNFLNILNINQIWLYGRS-CA 340 +L A + V+ +A + ++ +N+L+++++ G Sbjct: 324 VDMRLIGEAFHALAARADTEDGSARRIVEAAARHLARAIVIQVNLLDLDEVVCGGPFWHP 383 Query: 341 FGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 L T+ + +P + P ++ + +G L ++ Sbjct: 384 IARLVLETLPEEVRRSPALIAKHP----VRVVESAVGEDVAAVGAACLVLDNAFS 434 >UniRef50_A9WJ57 ROK family protein n=2 Tax=Chloroflexus RepID=A9WJ57_CHLAA Length = 408 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 90/392 (22%), Positives = 167/392 (42%), Gaps = 9/392 (2%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 Q R N ++L L+Y +++ LARL ++ VS+++ EL V+ + Sbjct: 9 TRQHTRDVNLRLVLRLIYELGAVSRADLARLTNLTRTTVSDVVGELIERGLVIETGLATG 68 Query: 66 TR-GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 G + +A ++V S+E + + + G I T L+ Sbjct: 69 GGIGRTPMLLSVAEWSRPVAAISVNADSVEGALVSLRGNV-GRRISRSIQGQTGADALNT 127 Query: 125 IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184 +++ + + + + G ++ +G+ W + + LL E+ G+ V Sbjct: 128 LQETLDELIQTANQPLLGIGVTTPGLINASSGMIVRAVGLEWAD-LPLGQLLHERYGLPV 186 Query: 185 MVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV 243 V ND LALAE + + V+ + G+G+ V+N Q+Y G +G+G+IGH Sbjct: 187 KVVNDSQCLALAEHLFGEWRGVANLVVLKIGKGVGAGIVLNGQLYAGEGFGAGEIGHLAF 246 Query: 244 NPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLD-PEKLTTAQLIAAWQSGE 302 +G++C CG GCLETV AL QAR + + P S L+ ++ G+ Sbjct: 247 TANGLLCKCGNRGCLETVLGSDALLHQARTAIAANPNSILAAYASDLSLGRIAEGAAMGD 306 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDE 362 P + +A A G ++ +++L++ + + GR AFGE + + R+ R Sbjct: 307 PVAQHVITTAAAATGAAVATIISLLSVRHVLITGRITAFGETFAELVRREVA----QRAL 362 Query: 363 GPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 V+ T+I ++G + +L Sbjct: 363 PALVRDTEIRLAPAPTITPLIGAAAPVLTGEL 394 >UniRef50_B0MWK5 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MWK5_9BACT Length = 410 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 71/400 (17%), Positives = 158/400 (39%), Gaps = 18/400 (4%) Query: 6 NNQQIRHHN---KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 N + I H N K I+ + S L + IS+P ++ ++QEL E V ++ Sbjct: 15 NLKGISHKNNLFKRNIIAHMAVNGECTLSELTKELHISVPTITKLVQELVQENIVSDLGK 74 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 G + +A + +N+ ++ + + + E + L Sbjct: 75 VETPGGRRPNVFGLASSAIYFAGVNIGRDNMSFLITDLHNNIVKEELLTDFELQDRPQCL 134 Query: 123 SEI---EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 +I + + + + +++ G+V+P TG S ++ ++ ++E++ Sbjct: 135 EKICSNIAHFIDTCGVERAKILGVGVSVSGRVNPTTGRSYRYFT---SSEQSLRDMIEQR 191 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 +GIRV+++ND AE + S++ D +++ G+ V+N ++Y G +G+ Sbjct: 192 IGIRVLLENDSQARCYAEYTNSKSKDEMDVLYLHLGRGLAIGIVMNGKLYYGKSGFAGEF 251 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDP----EKLTTAQL 294 GH + ++C CG+ GCLET S A++++ + + + E + ++ Sbjct: 252 GHIPFFDNEIICSCGKKGCLETEVSGIAIEQKFGRLISQGVNTILREKYNKHEAIHVDEI 311 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTG 354 I A + + ++ G ++ +N N + + G G+ + + T Sbjct: 312 IDAAKHDDNLSIELIEEVGEKAGKAVAFLINTFNPETVIVGGELAEAGDYLMLPLKSATN 371 Query: 355 FNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + K T+ ++ + G L L Sbjct: 372 KYSLN----LVYKDTKFRLSKMGKTASAWGAAMLIRNQVL 407 >UniRef50_B9K724 ROK family protein n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K724_THENN Length = 388 Score = 268 bits (686), Expect = 2e-70, Method: Composition-based stats. Identities = 77/399 (19%), Positives = 163/399 (40%), Gaps = 32/399 (8%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD-ES 64 N+ +I+ NK IL++++ ++S ++ + ++ +V+ + +EL E + I Sbjct: 14 NSPRIKILNKKTILKVIHENHPLSRSDISEITGLTPSSVTRLTKELIDEGYIREIGTMGK 73 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQV--ANACLSPKGEFEYLQIDAPTPQALL 122 + G + E +L ++ + + + +G F + P+ Sbjct: 74 NSPGRRRVLLDLKKEAFLSLVFDIGVNITTYGIGFFDGEVELRGTFNTPK----NPEEFF 129 Query: 123 SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 + + R + ++ ++ G VD P W V ++ LLE + + Sbjct: 130 KTAREIYERISR--EHSITRISFSVPGMVDLEEKKILLAPNLGWEN-VNIEDLLE--VDV 184 Query: 183 RVMVDNDCVMLALAEKWQNN--SQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 V+ DN+ + LAEK+ + + I + G+G+ +++ +I+RG + +G+ GH Sbjct: 185 PVLADNEANLSMLAEKYHSEDLRNVEEAVFIIIREGVGTGLMVDGKIFRGPSFTAGEAGH 244 Query: 241 TIVN-PDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 VN C C +GC E V+S++ +Q L+ + + + A Q Sbjct: 245 MTVNMYSDRQCHCSNWGCWELVSSINWAIEQYGKELEGRN----------SIEKFQALKQ 294 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 + + R A I + + N +NILN + L G G+++ +II Sbjct: 295 KND--AKRVLMRFAENIAVGIVNLVNILNPELVILGGEVVDLGDSFF-SIIEDFVRQ--- 348 Query: 360 RDEGPSVKATQIGFGQLSR-AQQVLGIGYLYVEAQLRQI 397 R +V+ +I + ++G L VE + ++ Sbjct: 349 RALKAAVRNLKIRPTAFRNISSNLVGAAVLAVEDIIEKV 387 >UniRef50_Q47PH9 Putative xylose repressor n=1 Tax=Thermobifida fusca YX RepID=Q47PH9_THEFY Length = 417 Score = 268 bits (685), Expect = 3e-70, Method: Composition-based stats. Identities = 79/397 (19%), Positives = 147/397 (37%), Gaps = 18/397 (4%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 Q +R N ++L + +++ +A ++ VS+++ EL V ++ R Sbjct: 12 QAVRETNLGIVLRTIRTSAPCSRAVVAASTGLTKATVSSLVAELIDRGLVCETGLVNERR 71 Query: 68 -GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANAC-LSPKGEFEYLQIDAPTPQALLSEI 125 G I L L V + + A P+ ++ Sbjct: 72 VGRPGMMLTINGSTLVALGLEVNVDYLALAALDLLEREVLTRHVAFDARAAGPEECAKQL 131 Query: 126 EKCWHRHRK---LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL-- 180 + L + +++AI VD +G P W ++ L E L Sbjct: 132 KTLLLETVADPLLRDRPLLGVSVAIPALVDVSSGTVTNAPNLGWRN-FPLQQRLTELLAD 190 Query: 181 ----GIRVMVDNDCVMLALAEKWQNN-SQERDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 G V VDND + A+AE + ++ D + + GIG+ ++N + RG+ + Sbjct: 191 TPLAGAPVRVDNDANLGAVAEYRGGHLARTMDLVYLTGEVGIGAGVLMNGEPLRGASGFA 250 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLI 295 G++GH + DG C CG+ GCLE +A L ++ ++A L + E L + Sbjct: 251 GEVGHIPLLKDGPACACGQDGCLEALAGLDSILRRAVPDLVPEGPVRGSVVESLVAETV- 309 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF 355 +SG+ ++ + +G + +N+LN + I L G L + Sbjct: 310 RRAESGDATAVQALEDAGEWLGRAAATLVNLLNPSAIILGGYFVPLSPWLLPSCREAMAA 369 Query: 356 NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEA 392 F P+ +I L + G ++A Sbjct: 370 YSFA----PNSGNCRIEPSTLGLSAAARGGAMALIDA 402 >UniRef50_A0P1K5 Xyl repressor n=2 Tax=Labrenzia RepID=A0P1K5_9RHOB Length = 421 Score = 268 bits (685), Expect = 3e-70, Method: Composition-based stats. Identities = 76/351 (21%), Positives = 151/351 (43%), Gaps = 13/351 (3%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M + QIR N+ ++L+ L R + L ++ ++S V+ I +L ++ ++++ Sbjct: 1 MTRKADRDQIRRQNRSIVLQALRRNGPMARIDLGQMTRLSPATVTAITSDLLDQELILSL 60 Query: 61 DDESQT----RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSP----KGEFEYLQ 112 + E RG + P+ +T+ + ++ +I+ + N + F+ Sbjct: 61 ESEEPKAPQARGRPRTLLKLNPDAVYTIGVRLSVNNIDLALVNFAGEVVRSERSHFDSAT 120 Query: 113 IDAPT-PQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVE 171 DA + P+ L+ I + + + P + +A G V+ TGV P + Sbjct: 121 EDAASFPETLIGTIRQFLN-DAGIVPSRVREIGVAAQGVVETETGVVAWSPAFAGR-KIP 178 Query: 172 VKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRG 230 + L + G + ND M+ A W + ++ F VI +DYG+G ++ +++ G Sbjct: 179 IVGPLHDAFGADCYISNDTNMITEALHWSDPNRYSGTFAVIMLDYGVGMGLYLDNRLFSG 238 Query: 231 SLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLT 290 + + + GH P G +C CG+ GCLE S AL + A ++ ST + Sbjct: 239 ASGTAAEFGHANHLPGGALCRCGKKGCLEAYLSDYALVRAASHLPENTDPST-IKAGVGG 297 Query: 291 TAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAF 341 A+LI SG+ + + +G L + +++ +I L G + Sbjct: 298 LARLIELAGSGDKDACNAFHEAGRVLGYGLARVIAMIDPKRIVLTGAAMRA 348 >UniRef50_C7MQX8 Transcriptional regulator/sugar kinase n=2 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MQX8_SACVD Length = 443 Score = 267 bits (684), Expect = 4e-70, Method: Composition-based stats. Identities = 78/393 (19%), Positives = 142/393 (36%), Gaps = 17/393 (4%) Query: 16 CVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWL 75 +L+L+ + + R + + V+ + +L + + + G + Sbjct: 26 ATVLDLVRSGAARTRPEIGRRSGLGRTVVTQRVNQLMACGLLEEGALGPSSGGRAPRELK 85 Query: 76 IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKL 135 L + TSI V + + E A P+A+L +E+ Sbjct: 86 FRAHAGVILAAELGATSINVGVVDLAGTVLAEHSEDADIAAGPEAVLERVEEVLDELLDQ 145 Query: 136 WPDH-------TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDN 188 + + + G V+ TG P P V+ L + V VDN Sbjct: 146 VRAEQNDPDLTVWGVGIGLPGPVEFATGRPSAPPIMPGWDGYPVRDRLARRYNTPVWVDN 205 Query: 189 DCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV-NPD 246 + +AL E +++ RD + + GIG+ V ++RGS +G IGH V + Sbjct: 206 EVNTMALGELRAGSARGQRDILYVKIGTGIGAGLVSGGTLHRGSQGCAGDIGHAAVSDET 265 Query: 247 GVVCDCGRYGCLETVASLSALKK----QARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 VVC CG GCLE A +AL + A+ D +T A + A QSG+ Sbjct: 266 EVVCRCGNIGCLEAYAGGAALARDGLSAAQEGRSRLLAEVLADTGTITAADISRAAQSGD 325 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDE 362 + R+ IG L ++ N + + G G+ L + + R Sbjct: 326 RTSVELLTRAGRFIGGLLATLVSFFNPALVIIGGGVAGAGDLLLAAVRETV----YRRSL 381 Query: 363 GPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + + +I L+ ++G ++ ++ Sbjct: 382 PLATRELRIIRSTLNDRAGLVGAAFMVIDELFT 414 >UniRef50_A1WMZ8 ROK family protein n=2 Tax=Proteobacteria RepID=A1WMZ8_VEREI Length = 372 Score = 267 bits (683), Expect = 5e-70, Method: Composition-based stats. Identities = 80/370 (21%), Positives = 149/370 (40%), Gaps = 11/370 (2%) Query: 34 ARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSI 93 AR S + ++ L E + + + + G + T ++ L +++ TS+ Sbjct: 2 ARRLAYSKSKANAMVAALLDEGVLDEVGLQESSGGRRAETLRLSESLGAVLGVDMDATSM 61 Query: 94 ECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHR---KLWPDHTINLALAIHGQ 150 + + ++ P +L+++ L I + + + G Sbjct: 62 QLALMRPDMAVLARQCETIDVRRGPGVILAQLCGLMRELMARCGLSSSQLIAIGMGVPGP 121 Query: 151 VDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCV 210 VD +G P P ++ L E V VDND ++AL + W+ DF V Sbjct: 122 VDFASGQLVNPPLMPDWDGFSIRDYLREAFVAPVFVDNDVNLMALGKLWRLQRTLSDFLV 181 Query: 211 INVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQ 270 I V GIG V + Q+YRG+ +G +GH V+ G C CG GC+E +A+ AL + Sbjct: 182 IKVGTGIGCGIVCHGQVYRGTNGSAGDVGHICVDQAGPRCHCGNQGCVEAMAAAPALVRA 241 Query: 271 ARVWLKSQPVSTQLD----PEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNI 326 A + S + L L A + G+ + R+ + +G L + +N Sbjct: 242 AIEVAQKGESSWLAERLQASGSLGIEDLAQASRVGDVAANILIQRAGSLVGQMLASVVNF 301 Query: 327 LNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIG 386 N + +++ G G +L ++ + + + R S + +I L+ ++G G Sbjct: 302 FNPSHVFIGGLVADMGPLFLASVRQ----SVYHRSLALSTRHLEIQCAPLADDAALVGAG 357 Query: 387 YLYVEAQLRQ 396 L ++ L Q Sbjct: 358 VLAMQESLTQ 367 >UniRef50_A9WTI5 Transcriptional regulator, ROK family n=1 Tax=Renibacterium salmoninarum ATCC 33209 RepID=A9WTI5_RENSM Length = 403 Score = 267 bits (683), Expect = 6e-70, Method: Composition-based stats. Identities = 82/388 (21%), Positives = 138/388 (35%), Gaps = 22/388 (5%) Query: 16 CVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWL 75 IL L+ ++++ LAR ++ ++ + EL + T G Sbjct: 30 SAILSLIASNPASSRADLARKLNLAPSTITQRINELIEAGLIAESGAGGHTGGRRPTLLS 89 Query: 76 IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKL 135 + + L ++ N + + P+A+L I + + Sbjct: 90 LVADAGCILAADLGAAHAWVGRLNMSCALLDSSLISIDISAGPEAVLPIISEAMRSLIED 149 Query: 136 WPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLAL 195 + LA+ G VD G+ + + V+ L + VDND M+AL Sbjct: 150 DTPPLRGVGLALPGPVDFTRGMVDSPSRMRGWHQYPVRDWLSREFDTAASVDNDANMMAL 209 Query: 196 AEKWQNNSQE------RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGV- 248 E Q D + IG ++ Q+YRG+ SG I H V+ G Sbjct: 210 GEYSLRQRQNPDTKNRTDTLFLKAGAAIGCGLILQGQLYRGASGTSGDIAHVQVSAAGEL 269 Query: 249 VCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSW 308 C CG GCLETVAS +A+ Q + E A +I +G+ T+ Sbjct: 270 PCACGHRGCLETVASGTAIVSQL----------IEAGVEVKDLADVIRFALNGDTQTTTR 319 Query: 309 VDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKA 368 + + +G +L +N +N + + L G E ++ I Q + + K Sbjct: 320 LRAAGRLLGQTLSTVVNFINPSLVVLGGGLSQV-EPYVAAIRSQL----YAGCHPLAAKN 374 Query: 369 TQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 I Q +LG G + A L Q Sbjct: 375 LLIEPSQAGSQAGLLGAGQQCLRAVLAQ 402 >UniRef50_B8CYI5 Glucokinase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYI5_HALOH Length = 322 Score = 267 bits (683), Expect = 6e-70, Method: Composition-based stats. Identities = 81/324 (25%), Positives = 144/324 (44%), Gaps = 14/324 (4%) Query: 82 WTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIE---KCWHRHRKLWPD 138 + + +++ T I +A+A + + + ++ I + + L + Sbjct: 4 YYVGVDLGGTKILTALADARGKIVAKKKLPTEARKGEEKVIQNIVSSIDAVLQEKGLSRE 63 Query: 139 HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEK 198 I L + G ++ G+ P W V +K +LEE+ GI V+++ND AL EK Sbjct: 64 DVITLGVGSPGPLNTQEGIIYLAPNLGWRN-VHIKDILEEETGIPVILENDANAAALGEK 122 Query: 199 WQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGC 257 W Q+ + I V GIG +IN++I+ G G+G++GH ++ P G VC CG GC Sbjct: 123 WFGAGQDVDNLIYITVSTGIGGGIIINKKIFHGINDGAGEVGHMVIEPGGPVCGCGNRGC 182 Query: 258 LETVASLSALKKQARVWLKSQPVS-----TQLDPEKLTTAQLIAAWQSGEPWITSWVDRS 312 E VAS +A+ K R +K + + DPEK+ + + A + G+ D++ Sbjct: 183 FEAVASGTAINKMGREAVKENKATLLMELSGGDPEKIDGSLIARAARQGDEVARKIWDKA 242 Query: 313 ANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIG 372 +G+ L N LNI N I L G G+ + + + D + + +I Sbjct: 243 GYYLGIGLANLLNIFNPEMIILGGGVMNAGDLIMEPMKKSLK----DHALESAFNSVEIR 298 Query: 373 FGQLSRAQQVLGIGYLYVEAQLRQ 396 +L V+G + + +L + Sbjct: 299 QAELGNDTGVIGAVAVAMGDRLLE 322 >UniRef50_A0LSD8 ROK family protein n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSD8_ACIC1 Length = 420 Score = 267 bits (682), Expect = 7e-70, Method: Composition-based stats. Identities = 85/386 (22%), Positives = 145/386 (37%), Gaps = 10/386 (2%) Query: 16 CVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWL 75 +L L+ R +S L + + A++ L L + + + T G Sbjct: 16 AQLLALIRRGSAVTRSELVQSSGFGRTAIARRLDHLMALGLIAESEPLPSTGGRMPRGVY 75 Query: 76 IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKL 135 + L + TSI + + E A P++ L+ +E + Sbjct: 76 FRADAGRLLVAELGATSIAAGICDLDCRVLSSREEAWDIAAGPESTLARLEALLSELLRD 135 Query: 136 WPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLAL 195 + + + G ++ TG + P P V+ L ++ V VDND +LAL Sbjct: 136 HQAKVWGIGVGLPGPIEFATGRPVSPPIMPGWDRYPVRERLAKRFSAPVWVDNDVNVLAL 195 Query: 196 AEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV-NPDGVVCDCG 253 E + D I + GIG+ V +++RG+ +G IGH V + VVC CG Sbjct: 196 GELRAGVGRAHSDLIYIKIGTGIGAGIVSGGRLHRGAQGCAGDIGHVAVTDDQAVVCRCG 255 Query: 254 RYGCLETV----ASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWV 309 GCLE V A AR + LT A + A +G+ + Sbjct: 256 NIGCLEAVAGGAALARRATAWAREGRSGYLQQRLTEGGDLTAATIAAGAAAGDTGCVELL 315 Query: 310 DRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKAT 369 +A IG SL F+N N + + + G G +L +I ++ + R + + Sbjct: 316 AAAARQIGDSLATFVNFFNPSIVIIGGGVAQAGNAFLASIRQRV----YSRSLPLATRDL 371 Query: 370 QIGFGQLSRAQQVLGIGYLYVEAQLR 395 QI L ++G ++ V+ L Sbjct: 372 QIVLSSLGDIGGLIGAAHMVVDEILS 397 >UniRef50_C9LAU2 Transcriptional repressor of the xylose operon n=1 Tax=Blautia hansenii DSM 20583 RepID=C9LAU2_RUMHA Length = 399 Score = 267 bits (682), Expect = 7e-70, Method: Composition-based stats. Identities = 90/394 (22%), Positives = 164/394 (41%), Gaps = 29/394 (7%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N + IR++N+ ++LE + +++ LA+ ++ +SNI+QEL + + I Sbjct: 19 NQEMIRNNNRRLVLEFIINNPPVSRAELAKQLSLTKATISNIVQELLEQNFIREIGSAQT 78 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL---- 121 + G + L L + P I + N KGE + ++ PQ Sbjct: 79 SMGRKPILLEFNKAYGFALSLEIQPQQIIALLTNL----KGEVQEIKKIPFCPQDNLLQH 134 Query: 122 LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 L +I + R + + I +++ I+G V P P + L+E Sbjct: 135 LEQILNFYIRENTAFKNKIIGVSIGIYGVV--QKNEILFTPYYPLPKS-GLGTHLQETFQ 191 Query: 182 IRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 I V V+N+ + L E ++ + ++ INV GIG ++N ++Y+G +G+ GHT Sbjct: 192 IPVFVENEANLSVLGEAAFHH-KYKNMIHINVHDGIGMGILVNGRLYKGRDGYAGEFGHT 250 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 I+ PDG C CG GC E AS A+ + K E +T ++ + + + Sbjct: 251 ILFPDGKPCPCGNQGCFELYASQRAILENYAARQKK---------ENVTISEFLKDYDAN 301 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 P +D I + + N +N N + I L + AF + + R + + ++ Sbjct: 302 LPLAHEMMDLFVKYISIGINNIINTFNTDIIVL---NSAFSNHIPDINQRISEYLAGHQN 358 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + I +L +LG + VE L Sbjct: 359 RDCN-----IIPSKLGNLSCLLGGARISVENFLD 387 >UniRef50_C9XQA7 Xylose repressor n=6 Tax=Clostridium difficile RepID=C9XQA7_CLODC Length = 408 Score = 267 bits (682), Expect = 8e-70, Method: Composition-based stats. Identities = 74/399 (18%), Positives = 156/399 (39%), Gaps = 25/399 (6%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 ++ + IR N+ ++LE + + +++++A ++ +S I ++L E V I Sbjct: 21 IKLVTDKYTIREMNERLVLEQIIKNGPISRASIASTIGLNKATISAITKKLIDESLVHEI 80 Query: 61 DDESQT--RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPK--GEFEYLQIDAP 116 + T G + +L +++ I ++ + + +Q+ Sbjct: 81 GIGNSTHSGGRKPILLVFNKCAGISLSMDIGYDYIFSSLSYLDGTIINSKKLTDIQVSKD 140 Query: 117 TPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 L+ EI ++ + P I L LAIHG P +++ +L Sbjct: 141 NVIQLIDEIINSYNISKIDTPYKVIGLTLAIHGI--TCENKVLFTPYYN-LNEIDLYSIL 197 Query: 177 EEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 +K + ++N+ + ALAE + +++ G GS +IN ++Y G SG Sbjct: 198 SKKYDFPIHIENEANLTALAENTFSTV-HNSLLSLSIHSGFGSGIIINNKLYSGRNGMSG 256 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 +IGHTI+ P+G +C CG GCLE S + +Q +S+ + K+ + + Sbjct: 257 EIGHTIIMPNGKLCPCGNRGCLEQYCSEKKVFEQ---------LSSLENIPKIDSDIVKQ 307 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 + + + + +++ N + I+L + + L I + + Sbjct: 308 LYYEDNQNAKKVIHEFCSYLTIAINNAITTYAPEIIYLNSQIISDIPEIL-QITKDMLVS 366 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 F+ K I L + G + +++ L Sbjct: 367 SFN-------KGINIEISSLGSEASLYGGSAVNIKSFLN 398 >UniRef50_A5ZML3 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZML3_9FIRM Length = 410 Score = 266 bits (681), Expect = 1e-69, Method: Composition-based stats. Identities = 78/394 (19%), Positives = 157/394 (39%), Gaps = 20/394 (5%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 N+ + N+ +I +L+ + L+R ++ V+NI+ E + V ++E Sbjct: 28 GKNSITSKQFNRGLIFQLIATGTCNTRIELSRRTGLAKTTVTNIVAEFMEKGIVKECEEE 87 Query: 64 -SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 ++ G + +A + + + V T+I+ + + + E ++ T L+ Sbjct: 88 LTEVCGRNPIILKVADQAPKIIGILVFRTNIQAVLCSLDMQI-FRTETIEFGELTGDILI 146 Query: 123 SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 + R + + + + +A G VD G+ P+ V +K +++K + Sbjct: 147 QNAFELIDRMMEEEKN-ILGIGIASIGPVDIRNGIILNPPRFYGVKHVPIKEAIQKKYNL 205 Query: 183 RVMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V D+D ALAEK + E+DF ++ V GIGS FV +++ ++GH Sbjct: 206 PVYFDHDNNCAALAEKLFGIGKAEQDFLLLAVSNGIGSGFVCGGEVFHSHRGFETELGHV 265 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 +N G+ C CG GCLE AS ++++ + T L+ ++ Sbjct: 266 SINCKGLQCSCGNRGCLEMYASSYVVREKLKKI-------TGLNLPYADYFKIHDR---- 314 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 P + ++ I L + +N+L I L G +W +++ DR Sbjct: 315 -PEVEDILEEMIQDISAGLVSIINMLQPEMIVLG----YDGIDWPEDYVKKLEILINDRK 369 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + + Q++G L V + + Sbjct: 370 IAQDGWNIPVKKAYFGKQAQLVGAAALVVNSIFK 403 >UniRef50_A8UDG8 Xylose repressor protein n=2 Tax=Firmicutes RepID=A8UDG8_9LACT Length = 395 Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats. Identities = 77/405 (19%), Positives = 170/405 (41%), Gaps = 23/405 (5%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ +++ + IL+++Y + ++ +++ I+ VS+I+ L E+ + Sbjct: 1 MKITKRQKEL----QTKILDIIYTKGPLSRIDISQATGITPATVSDIVGNLIVEQLIHET 56 Query: 61 DD---ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPT 117 + ++ G + I+P + + + ++ + + E + L D T Sbjct: 57 GEIVSDTNKSGRKKISLDISPNHSFYIGVELSEKFFAYCLIDNK-QNLFEKKILTNDPST 115 Query: 118 PQALLSE---IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKY 174 P+ L+ + + H ++ +A+ G D T + T K Sbjct: 116 PERNLTASLFVTELHSFLLHCSNYHPQSIGIALPGHFDEENQSILT--NNSFWTNFNFKQ 173 Query: 175 LLEEKLGIRVMVDNDCVMLALAEKWQNN-SQERDFCVINVDYGIGSSFVINEQIYRGSLY 233 LL + + V N+ + L+E+ + S + +F ++V G+ S + +Y + Sbjct: 174 LLS-TINLPVYFKNNVHCMTLSERLFGHDSTDNNFTFVHVGRGMFCSSIYQSNLYGDNNN 232 Query: 234 GSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVS----TQLDPEKL 289 G+IGH +V+PDG +C+CG+ GCL+T AS S + K++++ + D L Sbjct: 233 LVGEIGHIVVHPDGELCECGKRGCLQTYASESWIIKKSQILFDKSDSTYLRQLATDRAHL 292 Query: 290 TTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 T ++ A++ G+ + + + + + ++L N +++ +++ ++G + + L+ I Sbjct: 293 TIEVILQAYKLGDEGVINILHNAIKYLSITLNNLSMMIDADKMIIHGELFSE-KQLLDLI 351 Query: 350 IRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 N + K T I S L L V QL Sbjct: 352 KDYLEKNI---ALLATKKKTLIEIKNYSAINGALSAAGLCVAKQL 393 >UniRef50_A4BCC4 Probable transcriptional regulator n=1 Tax=Reinekea blandensis MED297 RepID=A4BCC4_9GAMM Length = 394 Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats. Identities = 92/395 (23%), Positives = 159/395 (40%), Gaps = 13/395 (3%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVN---ID 61 + +QIR NK I+ L + L + ++S V+ I EL+ E R++ Sbjct: 4 TDTEQIRLANKKQIIHYLRVHGPIARVDLGQALKLSPATVTAITSELQQEARLIEHPATT 63 Query: 62 DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGE-FEYLQIDAPTPQA 120 +++ TRG +AP+ L L ++ ++ + N E L A + + Sbjct: 64 EKTNTRGRPRVLIDLAPDAFHVLGLKLSINELKMHLGNHKGQVSDEMVIDLDTRALSEEG 123 Query: 121 LLSEIEKCWHRHRKLWPDH--TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 L I R P H L +A+ G V+ + G P V +K+ LE+ Sbjct: 124 LFDAIASAVRRFNASVPAHKRPKALGIAVQGVVNGLNGEIIWSPALAVR-KVPLKHELEQ 182 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 ++ + V + ND L +A + Q Q DF VI + YGIG VIN ++Y G + + Sbjct: 183 RIQLPVTIANDANCLTMAIRHQRRYQSLTDFAVIMLGYGIGMGMVINGELYLGHHGAAAE 242 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 GH+ P+G C CG+ GC+E AL + A L P + + L+ Sbjct: 243 FGHSKYYPEGAQCLCGKRGCIEAYVGDYALYRDASALFP-LSWDNSLHPTEDSMQVLVNK 301 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNP 357 +S + R+ +G + N + +L++ +I + G + + + + Sbjct: 302 AESDSKELRDLFQRAGRVLGHGISNLIALLSLEKIIISGPGSRAY-HLMEAGLMTNLEDS 360 Query: 358 FDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEA 392 D + T I + GI L +EA Sbjct: 361 LVSDL---IAETTIEHAAWDEDMTIKGIVVLALEA 392 >UniRef50_C9ZFY3 Putative xylose repressor n=2 Tax=Streptomyces RepID=C9ZFY3_STRSW Length = 406 Score = 266 bits (680), Expect = 1e-69, Method: Composition-based stats. Identities = 81/401 (20%), Positives = 153/401 (38%), Gaps = 24/401 (5%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 R N Q +R N +L + + +++ +A ++ AVS ++ EL + + Sbjct: 16 RLPDNQQGMRRRNLARVLHAVNAEGPLSRAAVASRIGLTRAAVSTLVDELIRSGLLEELG 75 Query: 62 DESQTR-GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGE-FEYLQIDAPTPQ 119 E R G ++ G + + + + + +P+ Sbjct: 76 PERPGRVGRPGSALALSGRGPAGIGAEIGVDHLAVCAVDLRGEVRARAVRQGTNRGRSPE 135 Query: 120 ALLSEIEKCWHRHRKLWPDHTI---NLALAIHGQVDPVTGVSQTMPQAPWTT-PVEVKYL 175 ++ ++ + + + LA+A+ G V P W + Sbjct: 136 PVVDDLTRLVRQVVAEAESEGLWPAGLAVAVPGLVASDARTVVRAPNLDWHDTDLGALLP 195 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 G+ V VDN+ LAE W + DF ++ + GIG + V++ ++ RG+ + Sbjct: 196 GGLPGGLPVTVDNEANFGGLAELWLGDGTPPDFLHVSAEIGIGGAVVVDGRLLRGTRGFA 255 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLI 295 G++GH V P+G C CG GCLE A A+ + A L+P + L Sbjct: 256 GELGHVPVRPEGPACACGGRGCLEQYAGEEAVLRAA-----------GLEPAEHRVEFLA 304 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF 355 +G+ + + + A+G++L +N+L+ + L G A L ++ R+ Sbjct: 305 ERAAAGDKEVHRALRGAGTALGIALTGAVNLLDPETVVLGGALAALAPWLLPSLERELAR 364 Query: 356 NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 R GP+ T +L +LG + V A L Sbjct: 365 ----RTAGPACAVT---VSRLGSDGPLLGAAHSVVRAVLDD 398 >UniRef50_B0PG67 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG67_9FIRM Length = 398 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 76/390 (19%), Positives = 149/390 (38%), Gaps = 15/390 (3%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 N Q ++ N+ ++L++L ++ +A A +S +NI+ +LE+ + Sbjct: 6 RGGNAQDMKTRNRLLVLQMLCTYGPLSRGEIAARAGLSKMTATNIISDLETAGLIAEEKG 65 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 ES G G ++P + + E +A+ +A L Sbjct: 66 ESAGAGRRPGLIRLSPASPLVCGITIGRRRCEAVLADLSAQIVARESACYDNALDGPRLS 125 Query: 123 SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 + + R K + +A G +D G P + V+ +L + G+ Sbjct: 126 ELLARLCSRLLKRVDRPVAGIGVAALGPLDARAGTLLNPPNFYGIGHLPVRAILSDASGL 185 Query: 183 RVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 ++ +D ALAE+ Q F + + GIG+ V++ ++ G SG++GH Sbjct: 186 PCVLLHDVSAAALAEQLYGAGQAFESFFYLQIRDGIGAGMVLDGALFDGVAGLSGELGHV 245 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 +N +G C CG GCLE AS AL AR + + + + I+A +G Sbjct: 246 SINFEGPQCACGGRGCLECYASERALLAYAREYAARTGTAAPEN-----WSDAISAAGTG 300 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWL--YGRSCAFGENWLNTIIRQTGFNPFD 359 + + ++R + +L N L +++++++++ G E L + + Sbjct: 301 DAACAAALERYCGYVAAALSNALCLIDVHRVFVGYDGDGGGLLERLLEQRVNE------- 353 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLY 389 R + + V G L Sbjct: 354 RLHIAGCRRITVRRSSFGSDASVYGAAALA 383 >UniRef50_C4RIY1 ROK-family transcriptional regulator n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RIY1_9ACTO Length = 423 Score = 265 bits (679), Expect = 2e-69, Method: Composition-based stats. Identities = 73/398 (18%), Positives = 144/398 (36%), Gaps = 11/398 (2%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 R + N R +L+LL + ++ LA L+ ++ ++++++ L V+ + Sbjct: 19 RGMLRNDDGRVTTAGRMLDLLRTRSTLSRVELAELSGLTQATITHVVRRLIDGGLVLEVG 78 Query: 62 DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL 121 E Q RG + + + + + V T+ V + + P A Sbjct: 79 REQQGRGQPRRLLELNADAWYAVGVQVDRTTTTIVVIDFAGRRVATAGFRGTGTSGPDAA 138 Query: 122 LSEIEKCWH---RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 +S + + + I + L HG D G+ P + L Sbjct: 139 VSALADHIDDLLHSTAVPRERVIGVGLVTHGPQDRERGMLLMAHPTPDWLQYPLTSTLSN 198 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 +LG+ V+++ND A E+W F +I + G+G V N YRG + +I Sbjct: 199 RLGLPVLLENDATAAATGEQWSGTVPTDTFGLIYLGSGLGGGIVANGNAYRGRASNAVEI 258 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARV---WLKSQPVSTQLDPEKLTTAQLI 295 GH + C CG GC E A + Q + + ++ Sbjct: 259 GHVGLMGASAPCVCGNCGCAEAEAGPHTVVAQVLAHPDLAGRLGIKAHEEDTLADFERVA 318 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGR-SCAFGENWLNTIIRQTG 354 AWQ+ +P T+ + RSA IG + +N+ +++ + L G + G + + + + Sbjct: 319 RAWQADDPDATAILQRSARWIGRAAVTMVNLFDLDTVVLAGPALISAGPLYQHFVEAELT 378 Query: 355 FNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEA 392 + R ++ +G + + Sbjct: 379 RHALSRALSRP----RVLLSANVDTAAAIGGALHVLRS 412 >UniRef50_C5EN99 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EN99_9FIRM Length = 450 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 79/403 (19%), Positives = 156/403 (38%), Gaps = 19/403 (4%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 IN + ++ N+ IL+LL ++ +A ++ V+ I +L S +V + Sbjct: 53 TGINLENVKVSNRSAILKLLNDHGAMSRKDIALELGLTPATVTLICTQLLSAGILVEKGE 112 Query: 63 --ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 E + G + I + + L +++ +++ + A PQ Sbjct: 113 MEEEKRAGRKKVSIDINYQYKYVLSVSIEAPETCISISDLKGRLIAGRKLKTDGALEPQV 172 Query: 121 LLSEIE---KCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 L ++ K + + + + +++ G V TGVS + W V V ++ Sbjct: 173 FLKQVADEGKSLMWEQGISKESVLGAGISLPGPVKRDTGVSLHAYRI-WNEAVPVGEYMK 231 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 L + V+V+N+ A E + + + I G+GS+ +I +IY + Sbjct: 232 MYLDLPVVVENNVKAFAEGELIYGTGKNQENLLFIKWGPGVGSAIIIQNKIYDSQNSKTA 291 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQAR-----VWLKSQPVSTQLDPEKLTT 291 +IGH IV P G+ C CGR GCLET + A+ ++ R + D EK+ Sbjct: 292 EIGHYIVEPGGLPCRCGRRGCLETHVATHAMAERVRRACTKESMPGLYAFVDGDVEKIEV 351 Query: 292 AQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIR 351 + + +P + +D + ++ N + +L +++ +YG ++ I + Sbjct: 352 RNMEQWIEIEDPGLQKIIDDIVERLARTVVNTITLLAPDKVIIYGFMFE-----MDHIQK 406 Query: 352 QTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + F F I LS +G + V Sbjct: 407 R--FLDFCTYYDSLYDGDYILKSGLSDRIGYIGPLAIVVNEMF 447 >UniRef50_B7DT25 ROK family protein n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DT25_9BACL Length = 389 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 88/395 (22%), Positives = 148/395 (37%), Gaps = 21/395 (5%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M + +R N+ I+ L KR +++ L R +S P +S I+++L + + + Sbjct: 1 MPMKASPPLVRRLNERRIMNALREHKRLSRADLERQLNLSAPTISRIVEKLLRDGWIREL 60 Query: 61 -DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ 119 ESQT G I PEG L + + N + + A P Sbjct: 61 YPGESQTAGRKPILLDINPEGSGALGVELGRGCTRIVYTNMLAELRAS-RTISRSATGPN 119 Query: 120 ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAP-WTTPVEVKYLLEE 178 L+E+ K + L + I L +A G P + P + E LE Sbjct: 120 D-LAEMVKSFLVEESLTEERLIGLGVAAPGACFPNRDMVVPAPDLGTEWSKSEAAQQLER 178 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 +LG+ V + ND LAE W +Q + + D G+G+ + IY G+ +G+ Sbjct: 179 ELGVPVHLANDANAAVLAETWFGTAQHAQHVAFVLADVGLGAGLAVAGSIYEGAARKAGE 238 Query: 238 IGHTIVNPD-GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 HTIVN + V CD G GC+E+ AS A+ + + + T ++ Sbjct: 239 FSHTIVNFESDVRCDDGHAGCVESQASGKAIFARLKAVREVHA--------HETIEYVVK 290 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 SG S +DR+ + + N + + + L GR + I + Sbjct: 291 RACSGVEPDASVIDRAFRYLAAGIANLVRAFDPEVVVLGGRMVLA-----SQIAYERLRG 345 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVE 391 P K I + +G L ++ Sbjct: 346 YVHDCLRPEHKL--ITCARFGLDAVAMGAASLVLQ 378 >UniRef50_C5BZR0 ROK family protein n=3 Tax=Micrococcineae RepID=C5BZR0_BEUC1 Length = 393 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 84/395 (21%), Positives = 145/395 (36%), Gaps = 21/395 (5%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + +R N+ +I++ + + + LA +S +S I++EL VV + Sbjct: 7 TSGSQSSLREANRSLIVDTVKQFGGLTQVELAGATGLSAATISTIVKELLGAG-VVEVRP 65 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 S++ G + +A + V S+ + + + E L Sbjct: 66 TSRS-GRRAQMVTLARRVGLAAGVQVGHRSMRVVLGDFSHTVVAEQSLPLPHEHLLDTGL 124 Query: 123 SE---IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + D + + L + VD TG+ + +++ ++ Sbjct: 125 DRASLLIADLLERVGSPIDELVGVGLGLPAPVDGATGMISVRGVMRGWDGEHLAHVMSKR 184 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 L V VDND + ALAE S+E D + YGIG+ V+N +YRG +G+I Sbjct: 185 LARPVHVDNDANLGALAEHTLGASREHLDSVYVRASYGIGAGVVLNGAVYRGYAGTAGEI 244 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH V+P G +C CG GCL+TV AL R + LT +IA Sbjct: 245 GHVQVDPQGAICRCGNRGCLDTVVGADALLASLRASHGN-----------LTLRDVIALA 293 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 G+ V + AIG + +N + + G GE L + Sbjct: 294 TDGDRGCARLVADAGEAIGTVVAGLCAAVNPQVVVVGGELAETGEILLGPLRDAVRRGVL 353 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 P ++ +L +VLG +++ Sbjct: 354 RNQIAP----LEVVAAELGPRAEVLGALVHVLQST 384 >UniRef50_A6EIN5 ROK n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIN5_9SPHI Length = 373 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 91/370 (24%), Positives = 159/370 (42%), Gaps = 15/370 (4%) Query: 31 STLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIAPEG-DWTLCLNVT 89 + L++L S+P V+ I+ +L + VV T G + T+L+ E + + ++V Sbjct: 5 TDLSKLTHKSLPLVTGIVNDLVQDGYVVEHGLAPSTGGRRALTFLLNKEKQKFIVAVSVD 64 Query: 90 PTSIECQVANACLSPKGEFEYLQI---DAPTPQALLSEIEKCWHRHRKLWPDHTINLALA 146 + + + + E + + D T AL + + + + + + Sbjct: 65 QLITTVVIYDMLNNIQVEPAKIYLNLADEQTSMALFISFITGYIAKSGISEEQILGIGIG 124 Query: 147 IHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQE- 205 + G ++ GV+ T +K L + L V +DND ++ALAE + Sbjct: 125 MPGVINAKLGVNHT--FFKIKNEGNLKNYLSDALKFPVYIDNDSSLIALAELKFGEGRNM 182 Query: 206 RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLS 265 +D V+N+ +GIG +IN I+RG +G+ H ++ +C CG+ GCLE SL Sbjct: 183 KDVMVVNIGWGIGLGMIINGDIFRGHSGYAGEFSHIPLSQSNKLCSCGKRGCLEVDTSLL 242 Query: 266 ALKKQARVWLKSQPVSTQ----LDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLY 321 L ++A+ + + S LD KL + A + G+P S + +A IG L Sbjct: 243 VLVERAKAEIAAGISSRLEQLFLDDSKLPGEHFLIAARDGDPLAVSILSDAAFLIGKGLS 302 Query: 322 NFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQ 381 ++ILN I L GR G+ ++ I Q N F T+I + + Sbjct: 303 TLIHILNPELIVLGGRGATAGKIFMAPI--QHAINEFCIPRLAD--HTKISVSASAERSE 358 Query: 382 VLGIGYLYVE 391 +LG L VE Sbjct: 359 LLGAAILVVE 368 >UniRef50_B8E0R0 ROK family protein n=2 Tax=Dictyoglomus RepID=B8E0R0_DICTD Length = 396 Score = 265 bits (677), Expect = 2e-69, Method: Composition-based stats. Identities = 81/396 (20%), Positives = 150/396 (37%), Gaps = 35/396 (8%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 Q R NK +IL R + +++ +A+ +S V+ ++ L E ++ I+ Sbjct: 8 RGGRASQQREVNKTIILNAFLRCRNISRTEIAKRFNLSKSTVTRLVNNLIDEGMIIEIEP 67 Query: 63 ESQTR-GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL 121 S+ + G + + PE L + V T + ++ K +L PQ Sbjct: 68 SSEKKIGRKAIVLGLNPEYRNALAIKVGVTYTYLSKIDFAMNIKEIKSFLTPK--NPQDF 125 Query: 122 LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 L E+EK + T + + I G VD P W + + ++ E++ Sbjct: 126 LDELEKATQMLFPEGLEKTHAVGIGIPGIVDNTFKNVVVAPNLNWKN-LPLGDMIAERMR 184 Query: 182 ------IRVMVDNDCVMLALAEKWQNNS---QERDFCVINVDYGIGSSFVINEQIYRGSL 232 I V +DN+ M +AE + + + V GIG+ +++ ++YRG Sbjct: 185 RAFSVEIPVKMDNEANMAVVAEGMLGTKIEYNDLNIVYVYVGEGIGTGLILDGKLYRGRY 244 Query: 233 YGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTA 292 +G+ GH + DG+ C CG GC E ASL + D EK T Sbjct: 245 NTAGEFGHMTIMKDGIKCKCGNLGCWERYASLGGDIAE----------KAGFDLEKET-- 292 Query: 293 QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAF-GENWLNTIIR 351 + + + + + + + L N +N LN + I L G ++ I + Sbjct: 293 -----AEIADEKA---LKKYVDELTVGLINIINGLNPDVIILGGPLIKKDTKDVWEFIRQ 344 Query: 352 QTGFNPFDRDEGPSVKATQIGFGQ-LSRAQQVLGIG 386 + ++ +I L +++G G Sbjct: 345 EVKKIVEEKSITSDAGKVRIELTSFLDYPAELVGAG 380 >UniRef50_Q0SE61 Possible xylose repressor n=11 Tax=Actinomycetales RepID=Q0SE61_RHOSR Length = 400 Score = 265 bits (677), Expect = 3e-69, Method: Composition-based stats. Identities = 74/382 (19%), Positives = 138/382 (36%), Gaps = 18/382 (4%) Query: 18 ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIA 77 + L+ + ++ + L +S AV+ + L++ VV ++ T G Sbjct: 19 VFALIRAGQATTRTEIGTLTGLSRTAVAARVSSLQASGLVVEREEGVSTGGRPPVKLSFH 78 Query: 78 PEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEK---CWHRHRK 134 + L + + + + + + Q +P L+ I + Sbjct: 79 VQAGVVLSAAIGRSRTQLAICDLAGDVIVAEDVEQEIGTSPAELMPVIAQRLIALRESLG 138 Query: 135 LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLA 194 T+ + +++ G VD G S P V ++ L + V VDND ++ Sbjct: 139 ETAGRTVGIGISLPGTVDTERGCSLNSPMMSGWDGVPLQPFLADVTDAPVFVDNDANVMV 198 Query: 195 LAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT-IVNPDGVVCDCG 253 LAE+ D +I G+G+ V + RG+L +G+IGHT GVVC CG Sbjct: 199 LAERRGERRDFADMLLIKASTGLGAGLVSGGVLQRGALGAAGEIGHTKTAAAQGVVCRCG 258 Query: 254 RYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSA 313 GC+E VA AL + + + E +I +G+ + S Sbjct: 259 DVGCIEAVAGGWALVRNLQEQGR----------EVTHIRDVITLALAGDAEARRMIRESG 308 Query: 314 NAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGF 373 IG L +N+LN + + G + ++ + + + + QI Sbjct: 309 RQIGEVLSGAINLLNPEVVIVGGDMAQAYDTFVAGLRETL----YGNAIAVATQQLQILP 364 Query: 374 GQLSRAQQVLGIGYLYVEAQLR 395 V+G + ++ L Sbjct: 365 WTHGELSGVVGSATMALDHVLS 386 >UniRef50_C0D3V9 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D3V9_9CLOT Length = 386 Score = 264 bits (676), Expect = 3e-69, Method: Composition-based stats. Identities = 77/399 (19%), Positives = 150/399 (37%), Gaps = 39/399 (9%) Query: 1 MRACIN---NQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRV 57 M N + IR N+ +IL ++ ++ +++ LAR +S VS+I+ EL +K + Sbjct: 6 MAKGGNPRHLELIRRINRSLILNMVKERQPVSRAQLARALNLSKTTVSSIVDELVRKKLL 65 Query: 58 VNIDD--ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDA 115 V D S G S P + + +++ ++ + + +E + + Sbjct: 66 VEYGDCCPSGGAGRPSVMLGFNPRSAYCIGIDIASANLRLIITDLAGEAL--YETKRPPS 123 Query: 116 PTPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 L+ +E+ R L + + + + G V G W+ +K L Sbjct: 124 SRMGELIGVVEEAV-RDCGLKMEAVFGMGIGVPGIV-TAEGSVVRAKFLGWSN-FPLKRL 180 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYG 234 +EE V V+N + AL E+W + Q D + + GIG + + Q+ G+ Sbjct: 181 MEEHFPFPVFVENGVNLAALGERWLGSGDQVDDMLFVRIGTGIGGAVICGGQLIHGAGGN 240 Query: 235 SGQIGHTIVNPD---GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTT 291 +G+IG+ + + D G V G+ G LE S +AL R T Sbjct: 241 AGEIGYFLESRDVELGNVNQPGQQGVLERKCSGAALTGHGRP-----------------T 283 Query: 292 AQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIR 351 +L AA+ G+ V+ + +++ N +++L + + G + + Sbjct: 284 EELFAAYGQGDREAARVVEPFIRDLSVAIANCVSLLGPAKAVIGGDVSEQMSPVIYRLRE 343 Query: 352 QTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYV 390 + R + L LG + + Sbjct: 344 EVERLTPIRADVC--------LASLGGRAGALGAVFHAM 374 >UniRef50_A0AF76 XylR protein n=1 Tax=Listeria welshimeri serovar 6b str. SLCC5334 RepID=A0AF76_LISW6 Length = 378 Score = 264 bits (676), Expect = 4e-69, Method: Composition-based stats. Identities = 73/395 (18%), Positives = 154/395 (38%), Gaps = 26/395 (6%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 N IR N+ ++L + ++ +++ L+ ++ +S+I+++L ++K + + Sbjct: 3 TNRTVIRESNERIVLNTIAQKGPHSRALLSDTIGLNKATISDIVKKLIAQKLINEVGIGE 62 Query: 65 QT--RGHSSGTWLIAPEGDWTLCLNVTPTSIECQV--ANACLSPKGEFEYLQIDAPTPQA 120 T G + + +++ +++ I+ + + F ++ I T Sbjct: 63 STNLGGRKPIMLELNAKAGFSVSVDIGYNYIDVMAQRLDGTAYKRELFPFIVIKRETIIQ 122 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 +S+I + P + + +AIHG V + Q P ++ L E+ Sbjct: 123 EISDILDVFLSSLPKSPFGIVGILIAIHGVV--LDNQIQFTPAYD-LAGLDFSSALHEQF 179 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 V ++N+ +LA+++ + S + I++ GIGS ++N ++Y G +G+IGH Sbjct: 180 ACPVYLENEANLLAVSDHTKEES-YANLVSISIHSGIGSGVILNNELYTGINGYAGEIGH 238 Query: 241 T-IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 IV +G C CG GCLE AS + + ++ L A+ Sbjct: 239 MQIVTENGRPCPCGASGCLECYASEKNILDTYQTRTGNKNAL---------VTDLCRAFT 289 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 E + ++ + + N + N I++ ++ I Sbjct: 290 EKEEEAMAVINDMVRYLATGIQNLTALYNPEIIFINSEISRLIPDFTKQIE--------S 341 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 R + K I L + G GYL ++ L Sbjct: 342 RLTSFTSKNIAIKESHLGEEAILYGAGYLIIQRFL 376 >UniRef50_D2QLA5 ROK family protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLA5_9SPHI Length = 410 Score = 264 bits (675), Expect = 4e-69, Method: Composition-based stats. Identities = 87/391 (22%), Positives = 170/391 (43%), Gaps = 18/391 (4%) Query: 11 RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHS 70 ++ + +L LY + + L R+ S+P+V+++++EL + V I + + G Sbjct: 22 KNQKQRKVLAHLYSEGTCTLAHLTRMLHSSVPSVTSLVEELIDNQWVTPIGTATGSNGRR 81 Query: 71 SGTWLIAPEGDWTLCLNVTPTSIECQVANACLSP--KGEFEYLQIDAPTPQALLSEIEKC 128 + + + + L+V+ + N +G+++ D P+ L Sbjct: 82 PVLFGLNTKSHYVAVLDVSTHDTKILFMNVQRKVIFRGDYDLRLNDNPSFLTSLVHYFHN 141 Query: 129 WHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDN 188 ++ D I + +++ G VD G++ T T + L +L V + N Sbjct: 142 ALADSEISIDDLIAVGISMPGLVDARRGLNLTYKNLH-QTGESLPQWLSAELNKPVYLIN 200 Query: 189 DCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDG 247 D L E +Q + IN+D+G+G ++N ++++G+ +G++GH V+PDG Sbjct: 201 DTKATVLGESRFGGAQGKKQVLAINIDWGVGLGIIVNGEVFQGASGFAGELGHIQVDPDG 260 Query: 248 VVCDCGRYGCLETVASLSALKKQARVWLKSQPVST----QLDPEKLTTAQLIAAWQSGEP 303 +C CG+ GCL T+ S SAL K+A+ + + VS + +++ ++I A SG+ Sbjct: 261 ELCFCGKIGCLSTITSASALVKRAQTDILAGQVSKLATFRDHVDQIDIDEVINAANSGDS 320 Query: 304 WITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI---IRQTGFNPFDR 360 + + + +G L +++ N I + G LNTI I + + F Sbjct: 321 YAIDILHETGYQLGKGLAIAISLFNPEIIVVDGVLFKAAAFILNTIEQAISKYCLSDFRN 380 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVE 391 D I QL+ + LG +E Sbjct: 381 DM-------TIEVTQLNGTAKWLGTHAYMME 404 >UniRef50_C6B3W7 ROK family protein n=11 Tax=Rhizobiaceae RepID=C6B3W7_RHILS Length = 405 Score = 264 bits (675), Expect = 4e-69, Method: Composition-based stats. Identities = 81/399 (20%), Positives = 156/399 (39%), Gaps = 23/399 (5%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ + R N+ +IL LL R+ +++ +A + +S AV+ ++ +L E V+ Sbjct: 1 MKLKGDQTTARAMNRRLILNLLRREGPRSRADIATVIGLSPAAVTFVVADLLEEGIVIEG 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 G I E + + S+EC + +P + + P Sbjct: 61 KTVPGLTGRRPIPVDINYEHALAVGFKLMVDSVECVATDLATNPVAAMR-VSLGGHDPDK 119 Query: 121 LLSEIEKCWHRHRKLWPD---HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 + + KL + +++ G ++ + W V + L+ Sbjct: 120 VADLLASTVPELVKLAGRPNAKLAGIGISMPGVINHEQTACVRSYRFKWDN-VPLASLVA 178 Query: 178 EKLGIRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 ++ + V +++D A+A++ Q R+ V+ V GI + VI+ ++YRG+ +G Sbjct: 179 SRVHVPVWLEDDTNAYAIAQQLFGLGRQHRNMAVLAVGVGISCALVIDGKLYRGANGAAG 238 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 + GHT+ +G +C+CG+ GCL S ++ ++ R E+L +L A Sbjct: 239 KFGHTLYEENGRLCECGKRGCLMAYHSEISMLRRWREATGR---------EELGLPELSA 289 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 A SG+ + V S IG +L N +NI + I G + + G+ +L + Sbjct: 290 ALASGDTTALALVADSGRGIGTALANLVNITDPEVIVAGGEAVSLGDPFLTPLREALSAR 349 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 F R P + G L + Sbjct: 350 TF-RTAPPLLPD-------WEDNSWARGAAALVTQKIFD 380 >UniRef50_C6JR29 XylR transcriptional regulator n=2 Tax=Fusobacterium RepID=C6JR29_FUSVA Length = 388 Score = 263 bits (674), Expect = 5e-69, Method: Composition-based stats. Identities = 77/395 (19%), Positives = 157/395 (39%), Gaps = 26/395 (6%) Query: 7 NQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQT 66 +++R+ N+ L + +K +++ ISIP V+ IL+ + K + + Sbjct: 8 REKLRNENRT--FRFLVEVREFSKLEISQYLNISIPTVTKILERFLTNKLIYETGTNNGK 65 Query: 67 RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIE 126 G + + P+ +++ + V I + N + + + + I Sbjct: 66 LGRKAIKYQFNPDAYFSIGIKVEMNHISMVLINLDGKILKQTVVKEEFINSENFVFLVIN 125 Query: 127 KCWHRHRKLWPDHTI-NLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVM 185 + + I + + + G V+P + + +EE+ G+ + Sbjct: 126 ELKKFLWEFDKKEFIKGIGIVLPGIVNPENNMIKLGGNFSLLNQD--MKEIEEEFGLPIF 183 Query: 186 VDNDCVMLALAEKWQNNSQ---ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 ++N+ A+ E N+S +++ +++D GIGS ++ Q+YRG SG+IGH Sbjct: 184 LENEANAGAIGEYIVNHSGLQTKKNILFVSIDTGIGSGIIVENQLYRGKGNKSGEIGHIP 243 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 + P+G C CG GCLE S AL K+ + E + G Sbjct: 244 IIPNGDKCACGSEGCLEQYCSNLALMKEFEKEFQC---------EIKEYEDIFQEKFIGN 294 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF--NPFDR 360 ++R + L + L +LN ++I + G+ + E + ++++ F N F Sbjct: 295 EKGKKILERYTWILALGIKTALMMLNSDKIIIGGKISDYKE-YFEPMLKEIIFSNNIFSN 353 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 D A + F LS +LG ++ + + Sbjct: 354 D------ADILEFSSLSDNANLLGAAFIPLGEFYK 382 >UniRef50_A3UNW3 Probable transcriptional repressor in the Rok (NagC/XylR) family n=1 Tax=Vibrio splendidus 12B01 RepID=A3UNW3_VIBSP Length = 405 Score = 263 bits (674), Expect = 6e-69, Method: Composition-based stats. Identities = 73/374 (19%), Positives = 148/374 (39%), Gaps = 15/374 (4%) Query: 1 MRAC--INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVV 58 MR+ ++ +++HNK VIL L+ ++ +++L + V+ ++ L + +V Sbjct: 1 MRSGLGVSLDDVQNHNKRVILNALHNSGSCSRKEISQLVGLDQATVTRAIKPLIEQGLIV 60 Query: 59 NIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP 118 RG SS + + + + T+ + +P Sbjct: 61 ETGVRKAARGRSSIYLGFNTQHLRIVSVRIQRTNFSIDTYDLNGVSLTNVVKPINTDNSP 120 Query: 119 QALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 + L+ + K K + +A+A+ G M A ++ + E Sbjct: 121 EELIEYLTKQVSDVLKEQECDVLGIAVAMPGPFLEQDNKIMLMTDAKNWQDIDFISHMRE 180 Query: 179 KL-GIRVMVDNDCVMLALA--EKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 + + +D + ALA + Q+ + +++ G+GS VI Q+Y GSL + Sbjct: 181 QFPDYPIYAGHDAKLAALAVWRQLQSTYEASVLLYVSLGQGVGSGLVIEGQVYHGSLGTA 240 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLI 295 G+IGHT +N G C CG GCLE +S +AL ++ + + ++ Sbjct: 241 GEIGHTSINFQGPQCKCGNLGCLELYSSTTALVERYKQ---------EASLVSADFEMVV 291 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF 355 A+ E + VD A + L N +N LN + + + G ++L+ + ++ + Sbjct: 292 NAFHDRESAAINAVDYLAKCLAHGLVNNINQLNPDLVVIGDELTQLGADFLSRV-KEYTY 350 Query: 356 NPFDRDEGPSVKAT 369 D +++ Sbjct: 351 RLLLPDLASNIELV 364 >UniRef50_A6CIT4 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus sp. SG-1 RepID=A6CIT4_9BACI Length = 372 Score = 263 bits (674), Expect = 7e-69, Method: Composition-based stats. Identities = 70/397 (17%), Positives = 139/397 (35%), Gaps = 36/397 (9%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ + + I+ N+ +IL + Q+ +++ L+R +S VS I+ EL +K ++ Sbjct: 1 MKKG-DYELIKQINRRLILSAVRNQQPVSRAALSRELGLSKSTVSGIVDELIKKKLIIEE 59 Query: 61 DDESQT--RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP 118 T G P+ + + +++ T I V + + E+ P Sbjct: 60 GQGESTKEGGRKGIQLFFNPKCSFGIGVDIGGTKILLVVTDLDGEIIFKEEHPTEK--NP 117 Query: 119 QALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 + ++ I R D + + + ++ G+ P W L+E Sbjct: 118 EKIVKLIYNFIDRSNT-PLDLISAMGIGVPSIINTKEGIVVDAPALKWRD-YRFLDFLKE 175 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 K ++ND E ++ D I + G+GS+ N QI G+ + +G+ Sbjct: 176 KFEFPCFLNNDVNCAMYGELRFGAGRDCSDLLFIAIGTGVGSAVYANGQIVEGATFSAGE 235 Query: 238 IGHTIVNPD---GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQL 294 IG+ + D G G +G E S +AL K +T +L Sbjct: 236 IGYLVDKSDVENGYKRVPGEFGAFENKTSGTALTKYG-----------------MTPKEL 278 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTG 354 + G+ + + +++ N +LN +++ + G + II+ Sbjct: 279 FDQYYQGDREAQEIIKDFTLNLAIAIANASCLLNSSKVIIGGGVSRS----MVGIIQHIQ 334 Query: 355 FNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVE 391 P +I Q +G E Sbjct: 335 R--LANQWTPFF--VEIESSQFQTDAGAIGAVAYAFE 367 >UniRef50_C5EFJ1 Xylose repressor n=3 Tax=Clostridiales RepID=C5EFJ1_9FIRM Length = 383 Score = 263 bits (672), Expect = 9e-69, Method: Composition-based stats. Identities = 74/393 (18%), Positives = 153/393 (38%), Gaps = 25/393 (6%) Query: 7 NQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQT 66 + IR N+ I++ + +K+ +++ ++ ++ VS I++E S K V + Sbjct: 6 TKDIRSANRLTIIKHILNKKQISRARISEETGLNKATVSTIVKEWMSLKLVEETTMGDSS 65 Query: 67 RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIE 126 G +A + + + +++ + + + + + + I+ + +I Sbjct: 66 GGRRPIILTLAAKAGYCIAIDIGARRLGLILTDLN-NEIISRQSIPIEKQAFSHVYQQIY 124 Query: 127 KCWHRHRKLW---PDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIR 183 R + P I ++LA+ G +D + GV + +P+ W +++K LLE++ + Sbjct: 125 IAIDRMIREIPPCPYGLIGISLAVRGIID-LDGVIRFIPKLQWHN-IDIKSLLEQRYHVP 182 Query: 184 VMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV 243 V +DND + A E + Q + V+ + I + N ++ RG L + +GH + Sbjct: 183 VYIDNDGNLAASMESRLH-PQYEELTVLCLTDVISCGMISNGRLIRGYLGFANAVGHHTI 241 Query: 244 N-PDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 N + C CG+YGC E S L +A + L++ E + I + Sbjct: 242 NIQETKQCSCGKYGCWEQYCSDQYLLDEANLHLETP-------LEDIDG--FIELVRKQN 292 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDE 362 P +D + + L N + +N I L + I++ Sbjct: 293 PLALGILDTYIKNLAIGLSNIIFFVNCEMIILNSHLIQSLPYLMPEIMKDIIL------- 345 Query: 363 GPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 P +I L +LG +E Sbjct: 346 -PITHTQEILISTLGNEAPILGASLKAIEEFFE 377 >UniRef50_C7Q736 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q736_CATAD Length = 402 Score = 263 bits (672), Expect = 9e-69, Method: Composition-based stats. Identities = 85/401 (21%), Positives = 162/401 (40%), Gaps = 15/401 (3%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 RA + +R HN+ +L LY + N++ LAR + +S +SN++ +L + V Sbjct: 4 RAQKTTRDLRWHNRADLLTRLYLGEATNRNDLARASGLSAATISNVVSDLIGDGLVGENG 63 Query: 62 DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEF-EYLQIDAPTPQA 120 +S G + P + +++ T I + + L P E + I PQ Sbjct: 64 SQSSAGGRPRSLLRVLPAFGHVVGIDIGETEIRVGLFDWTLHPVAEEARPVDIPRVPPQQ 123 Query: 121 LLSEI---EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 + ++ + D + + + + G G P W+ V + LL Sbjct: 124 VADQVLSEIAAVTARAGIAVDDLLGVGIGVPG----AGGSVIHAPTLGWS-AVPLAGLLR 178 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQERDFCV-INVDYGIGSSFVINEQIYRGSLYGSG 236 ++LG +DN + L AE W+ ++ + V + + G G + + + + Sbjct: 179 DRLGFTPDIDNGAMALGQAEAWRGAARGAERAVALLLGTGAGGALSLAAGPGGRARSFTM 238 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 + GHT+V+ +G C CG GCLET A+ + S P++ +L+ + Sbjct: 239 EWGHTVVDLEGPHCRCGARGCLETYIGAEAILARYAATPGSTPLAEDGVEAQLS-ELVAR 297 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 A Q E +D +A +G+ + N +N++ +++ + G G + + Sbjct: 298 ASQHHESAALEVLDATATYLGVGISNLINLVAPDRVIISGW---AGALLCDAALLPAVRR 354 Query: 357 PFDRDEGPSVKA-TQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 R P ++ T+I G+L + LG L V L Sbjct: 355 VVRRHALPYLQEFTRIEPGELGPSATALGAATLPVARLLAD 395 >UniRef50_C7PXL8 ROK family protein n=2 Tax=Actinomycetales RepID=C7PXL8_CATAD Length = 390 Score = 263 bits (672), Expect = 1e-68, Method: Composition-based stats. Identities = 84/378 (22%), Positives = 159/378 (42%), Gaps = 17/378 (4%) Query: 21 LLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE--SQTRGHSSGTWLIAP 78 ++ + ++ LAR IS AV+ + + + +D E + G I P Sbjct: 22 MVLTEGPLSRVDLARRLGISSAAVTKAARPFLDDGYLHELDSERTAPGAGRPVSPLAITP 81 Query: 79 EGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWPD 138 + ++ + + VT + VA+ + + Q+ P +L+ + P+ Sbjct: 82 DREFVIGVKVTADEVIGVVADLKARIRNSA-HRQLPDCEPATVLATLAALVEELLDADPE 140 Query: 139 ---HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLAL 195 T + +A+ G VD V GV + P W V++ + + G+ V+V+ND L + Sbjct: 141 LRGKTRRMGVAVSGDVDRVRGVVRLSPLLGWQD-VDLAGPVGDATGLVVVVENDVKALTV 199 Query: 196 AEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGR 254 AE W + DF ++ V GIG V ++ G+ +G++GH V+ G VC CG Sbjct: 200 AEHWFGDGVGTDDFTLVTVGAGIGCGIVTGGRLLSGAYGVAGEVGHVCVDASGPVCHCGA 259 Query: 255 YGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSAN 314 GC+E +A+ A+ +AR+ LT + +SG P + + + Sbjct: 260 RGCVEAIAATEAIVGRARLLTGRDG---------LTFTEAAELARSGSPEVCALFSEAGT 310 Query: 315 AIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFG 374 AIGL++ +N++ +I + G + + I + + F + + F Sbjct: 311 AIGLAITAVVNLIGPERIVVSGEGLDAYDLFETEIRQAYATHAFGAAARCPLTIRPLPFE 370 Query: 375 QLSRAQQVLGIGYLYVEA 392 + +R +GI L+ A Sbjct: 371 EWARGAAAVGIQTLFAPA 388 >UniRef50_B8D084 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D084_HALOH Length = 378 Score = 262 bits (671), Expect = 1e-68, Method: Composition-based stats. Identities = 67/401 (16%), Positives = 148/401 (36%), Gaps = 27/401 (6%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ N + ++ N+ +I++ L +Q +++ L ++ +S +S+I +EL E +V + Sbjct: 1 MQRG-NMKLMKKINRALIIQTLSQQGPLSRADLTKITDLSPTTISSITEELIQEGLIVEV 59 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYL--QIDAPTP 118 + G I PE + L +N+ + + N L + +P Sbjct: 60 GEGESKGGRRPILLDINPEDFYILSVNIAVDVMYVYLFNLKFQVINSVHDLIKKPVSPNL 119 Query: 119 QALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 + L E+ + + + + + + + G ++ G+ + + ++ Sbjct: 120 DSQLKELVQKVVENSNIGKKNVVGMGIGATGIINKEKGLITYSASLGISD-YPLLDKVKR 178 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 + ++++ND + AL EK ++ +F I + IG +I+ +IYRG G+G+ Sbjct: 179 EYDFPILLENDTNLAALGEKKFGCGRQLTNFFYIMIGSAIGGGIIIDNEIYRGKFGGAGE 238 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 GH V DG +C+CG GCL V + + + KS Sbjct: 239 FGHITVEKDGPLCECGNQGCLNAVLTPYITVRSREEFRKS-----------------FQE 281 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCA-FGENWLNTIIRQTGFN 356 + + + + +++ N+ + + I L G E + + + Sbjct: 282 IIKDDNFDSCRYHEFCEYLAMAITNYTKLFDPEAIVLGGEIARIAPERFYIDLEKYIKRM 341 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 + + VLG L + + Sbjct: 342 SLKGMNS----KIPVLPSSIRTNAVVLGGACLCFDNLYNNV 378 >UniRef50_A8S1Z3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S1Z3_9CLOT Length = 388 Score = 262 bits (670), Expect = 1e-68, Method: Composition-based stats. Identities = 67/396 (16%), Positives = 155/396 (39%), Gaps = 20/396 (5%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ N ++ N+ V+ E ++ K + +A + +S P V++++QE+ ++ VV Sbjct: 1 MK-GNNLSDVKKANRQVVYECIWSHKAVTMTDIAYMTHLSRPTVTSLVQEMTADNLVVKS 59 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANA---CLSPKGEFEYLQIDAPT 117 + G + + + + +++ + ++N + D Sbjct: 60 GYGTSNGGRNPVLYHANAGAAYAMGIDLEFPKVRMAISNLECENICFSVRVYPRDSDKDQ 119 Query: 118 PQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 LL + + + + + + I G +D S + V + +++ Sbjct: 120 MIRLLKQQMDDLIQDSGIDRSRLLGVGMGIPGVIDYKQNHSVLFERIEGWENVPIGDIIQ 179 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 +G V + ND +L+ AE+ + ++ ++ I + GIG + + + +G + SG Sbjct: 180 RYVGKPVYICNDVNLLSWAERKAAHLEDVQNMLYIVIRSGIGMAIWTDGSLMQGEMGNSG 239 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 +IGH V+ +G+ C CG GCL S A+ + + L+ Sbjct: 240 RIGHMTVDKNGLECKCGSRGCLGLYTSEKAMMRIYSELTGKEIKQAG---------DLVP 290 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 +SG+ + +G+ + N N+ +I+++ + ++ I+R + Sbjct: 291 LAESGDKAALQVFETCGRYLGIGIVNVANLFDISEVVVS------ASFDVSYILRNAQYA 344 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEA 392 R + +I G L+ + LG L ++ Sbjct: 345 LDVRKMNTIRREVKIREGLLAESGFGLGGCLLVLDK 380 >UniRef50_C6W7D4 ROK family protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W7D4_DYAFD Length = 407 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 76/390 (19%), Positives = 158/390 (40%), Gaps = 13/390 (3%) Query: 15 KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTW 74 + +L LY+ + + +A+L SIP+ + I+ +L E + G + Sbjct: 20 RSSLLLHLYQNGDTSINKMAKLFHASIPSATGIVNDLMREGWITETGTGPARAGRPPVLY 79 Query: 75 LIAPEGDWTLCLNVTPTSIECQVANA--CLSPKGEFEYLQIDAPTPQALLSEIEKCWHRH 132 + + TL +++ + + + L K + D+ L + + Sbjct: 80 GLNSKKYLTLIMDINRHDTQLVIFDLHNQLILKRKVAIRLDDSANFLEELFASTDDFLKS 139 Query: 133 RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVM 192 + + +++ G ++ G++ T V + L+E + V + ND Sbjct: 140 NNISHSKLWGIGVSMPGLINSSQGINLTYLNLTPP-GVPLVTYLKEHFDLPVCLFNDTKA 198 Query: 193 LALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCD 251 + E + ++ IN+D+G+G +IN +++ G+ +G++GH V PDG++C Sbjct: 199 TTIGEHRFGYAVDKSQVLTINIDWGVGLGIIINGEVFNGASGFAGELGHIQVKPDGMLCH 258 Query: 252 CGRYGCLETVASLSALKKQARVWLKSQPVSTQL-----DPEKLTTAQLIAAWQSGEPWIT 306 CG+ GCL+T+ S AL +QA+ + S + D E+L T+ +I A +G+ + Sbjct: 259 CGKVGCLDTITSAIALIRQAKEGIHSGRATILKQIVNNDLEQLETSHIIEAVHAGDEFSI 318 Query: 307 SWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSV 366 + +G L +++ N I + G G N I + + P Sbjct: 319 DLLSTVGTELGKGLATAVHLFNPEVIIVGGLLAEAGPFISNPIEQAINKYCLSDFKNP-- 376 Query: 367 KATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 I +L ++LG + + + Sbjct: 377 --LSIHISKLGSKARLLGTQAYLFDNLITK 404 >UniRef50_B5GCP5 Transcriptional regulator n=2 Tax=Streptomyces RepID=B5GCP5_9ACTO Length = 403 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 81/403 (20%), Positives = 144/403 (35%), Gaps = 29/403 (7%) Query: 1 MRACINNQQIRHHNKCVILELLYRQK-RANKSTLARLAQISIPAVSNILQELESEKRVVN 59 +R N ++ N+ V+L+ + R K ++ LA +S VSNI + L + Sbjct: 13 IRRGTNLPRMGDFNESVVLDAIRRHKAGLSRVELAEATGLSAQTVSNITRRLLDQGVARE 72 Query: 60 IDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ 119 +S G + P + + +++ P I + + + + Sbjct: 73 SGKQSTGSGKPRTLLQVTPGARYAIGVHLDPAVITYVLLDLLGTVVARRSEPTPRGVHTE 132 Query: 120 ALLSEIEK---CWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 ALL+ + + + + L +A G VDPV G+ P+ P ++ L Sbjct: 133 ALLAGMAASVGALIEDSGVDQERVLGLGIAAPGPVDPVAGLVIDPPELPGWGSFPLRERL 192 Query: 177 EEKLGIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 E G ++D D V A+AE+W + R+F + G G V+++ + RGS Sbjct: 193 EADTGFPALLDKDVVAAAVAERWSGAATDSRNFLFFYLGTGSGMGLVVDDTVLRGSSGNV 252 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKL--TTAQ 293 G++G L S AL ++A T DP+ + Sbjct: 253 GEVGG-----------------LGAACSSRALVEEAIELGALGHEFTPTDPQDAQRSLQH 295 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIR-Q 352 L GEP +DR IG + +L+ + I G L +I Sbjct: 296 LARIAADGEPRAAGIIDRWGVRIGRGVTAAATLLDSDTIVFGGPLWPLLAPRLLPLIEPM 355 Query: 353 TGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 +PF + V T + + +G L ++ L Sbjct: 356 VAESPFVK----PVHGTTVTTTAIGEDVAAVGAACLVLDRTLS 394 >UniRef50_C0ZJD3 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZJD3_BREBN Length = 392 Score = 262 bits (670), Expect = 2e-68, Method: Composition-based stats. Identities = 67/396 (16%), Positives = 151/396 (38%), Gaps = 21/396 (5%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 + N++ ++ NK +L+ + + +++ +++ Q+S P VS ++ E+ E + + Sbjct: 5 KKTGNSKLVKKLNKEEVLQQVVLHGQISRADISKQTQLSRPCVSALVDEMIQEGLLQEVG 64 Query: 62 DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL 121 G + ++++ +A+ + + + Sbjct: 65 MGDSKGGRKPILLEYNYQAYAIAGAIFEGSTLDMAIADMKGEFLARYRKRLAQPANGETV 124 Query: 122 LSEIEKCWH---RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 + ++ R + + + + + + G +G P W ++ +E Sbjct: 125 IEDLAAGLDRLLRESGIPRERLLGMGVGLQGVTQRGSGTVSFSPSTGWMGS-PIQQTIEA 183 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 +LG+ V++DND M+ L E + + + V GIG+ +++ Q YRGS +G+ Sbjct: 184 RLGLPVIIDNDVNMMTLGEYVRGAGVGHTNVVYMYVGTGIGAGIILDGQFYRGSREAAGE 243 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 IG ++ P + G G ET S+ +++QA+ +L + L +LI Sbjct: 244 IGFMMIGPVHNRPN-GASGVFETHYSIPGIQEQAKGFL------SDLQEGSSVIEELIRH 296 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNP 357 + P + + N ++ILN + L G + I + Sbjct: 297 AKH-NPEAEKLLADVYRHWAYGMANIISILNPEILILSGEMVHVDGEGVKQI------HE 349 Query: 358 FDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 + R+ P V + L ++G + +EA Sbjct: 350 WLREWVPEVPNLEK--ASLGERAGLIGAVHSVLEAF 383 >UniRef50_A1SG81 ROK family protein n=2 Tax=Nocardioides sp. JS614 RepID=A1SG81_NOCSJ Length = 400 Score = 262 bits (669), Expect = 2e-68, Method: Composition-based stats. Identities = 79/401 (19%), Positives = 147/401 (36%), Gaps = 27/401 (6%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVN- 59 M + ++R N +++ + + +++ L R +S VS+++ +L + +V Sbjct: 1 MAQGGSLGELRAANLALVISTIEQTGALSRADLMRRTGLSRSTVSSLVVQLLDQGVLVER 60 Query: 60 ---IDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAP 116 G +A ++V + +A + E Sbjct: 61 LDRGTPYKGRSGRPPILLELAALTGVVAGIDVGHRHVRVALARPDSTIVLERSVALDVDD 120 Query: 117 TPQALLSEIEKCWHRHRKLWP---DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVK 173 +P+ + + L I G VD G T P ++ Sbjct: 121 SPRESMDRVATLLDELLAESGHELSDVRGAGLGIPGPVD--RGGRMTSGILPTWRGLQPA 178 Query: 174 YLLEEKLGIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSL 232 L E+ G+ V ND + A E + RD + GIG+ +++ + G+ Sbjct: 179 AELAERTGVIARVHNDAHLGARGELAYGAACGHRDVIYVKASTGIGAGLIVDGHLVTGAT 238 Query: 233 YGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTA 292 +G++GH V+ +GV+C CG GCLET S L + + E+LT Sbjct: 239 GIAGELGHVQVDVNGVMCRCGSRGCLETEVSGPKLVELLQPAY----------DEQLTVP 288 Query: 293 QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQ 352 +++ QSG+ T ++ IG L N N+LN Q+ + G A ++ Sbjct: 289 RILELAQSGDAGATRALNDFGRRIGRVLANIANMLNPEQVVVGGGFGAA------PALQA 342 Query: 353 TGFNPFDRDEGPSVKATQIGF-GQLSRAQQVLGIGYLYVEA 392 + DR P+ A G L +V+G + ++ Sbjct: 343 GIRDALDRYSQPTTAAAITVLGGALGERAEVMGAIAVALDP 383 >UniRef50_C0GDS7 ROK family protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDS7_9FIRM Length = 326 Score = 261 bits (667), Expect = 4e-68, Method: Composition-based stats. Identities = 73/318 (22%), Positives = 137/318 (43%), Gaps = 12/318 (3%) Query: 83 TLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLW---PDH 139 +++ T I +A++ + ++ ++ + + + Sbjct: 6 YAAIDLGGTKIYSVLADSKGDILAHTRLETRAREGSETVMDQMVSSVDQLLEKSGGKKEQ 65 Query: 140 TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKW 199 + + I G D + P + V+V+ L++KLGI V+ +ND AL E Sbjct: 66 LAKIGVCIAGFYDWEKRLLIHSPNMAGWSDVDVESRLQDKLGIPVIAENDANAAALGESR 125 Query: 200 QNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCL 258 + Q D I V GIG+ + + +IYRGS +G+ GH +V PDG +C CGR GCL Sbjct: 126 RGAGQGSGDMVFITVSTGIGAGLITDGKIYRGSRGFAGEAGHMVVKPDGPLCGCGRRGCL 185 Query: 259 ETVASLSALKKQARVWLKSQPVSTQLDP----EKLTTAQLIAAWQSGEPWITSWVDRSAN 314 ETVAS +A+ + A +++ + + K+T + AA + +P + + + Sbjct: 186 ETVASGTAIARIANEQMQNGRKTILSEITAQNSKVTAPDVFAAAKKKDPLAQEVLQGAIH 245 Query: 315 AIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFG 374 +G+ L N +N+LN I + G G++ + + + P+ + + Sbjct: 246 YLGIGLVNLVNLLNPQVIVIGGGVAEAGDDLFVPLRQIIAEHAV----PPAAASVTLRKA 301 Query: 375 QLSRAQQVLGIGYLYVEA 392 +L V G+ L E+ Sbjct: 302 ELGVEAGVAGMLCLLTES 319 >UniRef50_C1XND9 Transcriptional regulator, MarR family n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XND9_MEIRU Length = 397 Score = 261 bits (667), Expect = 4e-68, Method: Composition-based stats. Identities = 68/392 (17%), Positives = 142/392 (36%), Gaps = 22/392 (5%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 ++ Q I+ N+ +ILE L R +++ LAR ++ VS ++QE+ E + Sbjct: 5 TPLDQQAIKRLNRRLILEALRRHGPQSRAALARAVGLTKSTVSTLVQEMLEEGLLDEGSR 64 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 G +P L + + + + + + + ++++++ L Sbjct: 65 HKPGLGRPGTALEFSPRHTLALGVELGVENTQLVLLDLNNTIHDKWDWVESPHTPLAERL 124 Query: 123 SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 +++ + R P + + LA+ G V+ P W +LE L + Sbjct: 125 TKLAEQVQ-SRLSDPTRLLGIGLAVPGVVNGRR--LLYAPGPGWHNEQP-AEMLEALLKV 180 Query: 183 RVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 +VDND AL E + Q + + G+G+ V++ Q+YRG L +G++GH + Sbjct: 181 PTLVDNDANAAALGETFWGEQQSP-LVYVLMTTGLGTGLVVDGQVYRGRLGAAGELGHWL 239 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 G R G +E SL A+ ++ + + ++ + + Sbjct: 240 T---GQPHSRSRAGDVEGTLSLRAMVERYQAASNRKEGFWG----------ILQRAEHQD 286 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDE 362 P+ + A +G + N + + L G + + + F Sbjct: 287 PYALQALQNLAYELGRFVVNLCVAFDPAVVVLGGAGAEAWKWLEAPLRQTIHNLAF---- 342 Query: 363 GPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 P + +G L ++ L Sbjct: 343 IPEHAEIPVKPSAFGHLAPAMGAAALVLQRFL 374 >UniRef50_A4AFQ9 Putative ROK-family transcriptional regulator n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AFQ9_9ACTN Length = 405 Score = 260 bits (666), Expect = 5e-68, Method: Composition-based stats. Identities = 73/391 (18%), Positives = 150/391 (38%), Gaps = 18/391 (4%) Query: 9 QIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRG 68 +R N+ L + +++ +AR + +S+ +V+N++ EL SE V+ + + G Sbjct: 17 DVRQRNRSQALRSVILTGETSRAAIARESGLSVASVTNLISELISEGLVMEAGSVASSGG 76 Query: 69 HSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKC 128 P G + L +V + ++ + ++ + +A+ +++++ Sbjct: 77 RPVTLLAPNPSGAYFLGADVGERGVAVELFDLSMTRIDREFRGGREGEPIEAIAADLDEA 136 Query: 129 WHRHRKLWP---DHTINLALAIHGQVDPV-TGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184 + R+ P D I + L + G V+ G Q+ +P+ V L+ I V Sbjct: 137 LNALRERNPAAWDRMIGIGLGLPGIVESDAEGRQVLYAQSLGWSPIPVADLVSH--DIPV 194 Query: 185 MVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV 243 +N A+AE W ++ + V+ + G+G + V N ++ RG +G+ GH + Sbjct: 195 FAENGAKTQAMAELWDGAARGVNEALVVLLGRGVGLAIVSNGELARGLNSSAGEWGHVKI 254 Query: 244 NPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEP 303 +G +C CG GC+E A+ + R S + +S +P Sbjct: 255 VRNGRLCRCGGRGCVEAYLGADAILELWREAGGVFDGSG--------WGAVGQLLESHDP 306 Query: 304 WITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEG 363 VD +G +L +N+ N ++ + G G + + + Sbjct: 307 VAVGVVDELIETLGSALGGLVNLTNPERVIIGGWV---GLRLMEALASRMEEATRAEALA 363 Query: 364 PSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + LG + +EA L Sbjct: 364 RPGGQFSLHACSFGGDTVALGAAIMPLEALL 394 >UniRef50_B5XVY7 ROK family protein n=6 Tax=Proteobacteria RepID=B5XVY7_KLEP3 Length = 402 Score = 260 bits (664), Expect = 7e-68, Method: Composition-based stats. Identities = 76/397 (19%), Positives = 154/397 (38%), Gaps = 27/397 (6%) Query: 1 MRA-CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVN 59 M+ N + R HN+ VI+E + ++ LARL ++ VSNI+ E+E + + Sbjct: 1 MKTSGTNLEHARVHNRRVIIEAVRLHGELTRAELARLTALTPQTVSNIVAEMEQMDLLTS 60 Query: 60 I-DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP 118 + RG + + P W++ +++ ++ + + + + P P Sbjct: 61 HQPRRASGRGQPAVPVSLNPASAWSIGIHLDHQTLIVVLVDLAGEVHFR-RLILVQKPQP 119 Query: 119 QALLSEIEKCWHRHRKLWP---DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 A + + + R L + + + + G S V+V Sbjct: 120 GATFARLAEVLDEIRALPTLDWSRVLGMGVVMPGPFGVEGISSTGPTTLNGWEGVDVAAE 179 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYG 234 L G+ V ++ND + A+ E++ +++ F + + G+G+ + +Y G + Sbjct: 180 LGRLSGLPVTLENDATVAAIGERFHGVARQLNSFVYLYIGTGLGAGIFTDGHVYTGHAHN 239 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQL 294 +G++GH +V P+G C CG GCLE SL A + LDP + L Sbjct: 240 AGEVGHIVVAPNGRPCYCGNEGCLERYVSLQAAYEFC-----------GLDPYRALPEDL 288 Query: 295 IAA-WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT 353 ++ + WITS + + ++ + + + + G A L ++ + Sbjct: 289 LSVDAALFDQWITSILA----PLRQAINLLECVFDAETVVVGGMMPA---PLLEKVLARL 341 Query: 354 GFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYV 390 + G + A ++ G LG L + Sbjct: 342 -PPLYQSVRGRYLPAQRVKMGMTGTDTAALGAAALPI 377 >UniRef50_C7QHP4 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QHP4_CATAD Length = 395 Score = 260 bits (664), Expect = 8e-68, Method: Composition-based stats. Identities = 78/387 (20%), Positives = 146/387 (37%), Gaps = 23/387 (5%) Query: 12 HHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID----DESQTR 67 ++ ++ LL + +++ +AR +S VS I+ L ++ VV +D Sbjct: 11 ERSRLAVVRLLRERGTMSRADIARSVGLSRSTVSGIIAALVADDLVVELDAKLAPAGGGA 70 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ---ALLSE 124 G ++ P + ++ + +AN + + P + S+ Sbjct: 71 GRPGAAVMLNPASGEAIGVDFGYRHVHVIIANVAHAVRIAKSVRLPVGYDPAQGFDVASD 130 Query: 125 IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184 + + P + + +++ G D GV + + V L +L + V Sbjct: 131 LIRTAIDEAGTDPSRILGVGVSVPGPFDTKRGVP-SSGMPSRWAGIPVATELAARLNLPV 189 Query: 185 MVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV 243 + D D + ALAE+ ++ D F + + GIG +FV N Q+ RG G+G+IGH +V Sbjct: 190 LADGDTRLGALAERRWGAARGCDEFVYLKLHGGIGGAFVSNGQLARGINGGAGEIGHLVV 249 Query: 244 NPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEP 303 + G +C CG GCLET L + + ++LT +I G+ Sbjct: 250 DATGPLCRCGNRGCLETFVGLPVVMRALEPAYG----------DRLTLRNVITMAWQGDR 299 Query: 304 WITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEG 363 + + G ++ NILN + + G A GE + + Sbjct: 300 GCIRALSDAGTMAGRAVGMLGNILNPQSVIIGGALSAAGELLMGPLREAAA----TASLP 355 Query: 364 PSVKATQIGFGQLSRAQQVLGIGYLYV 390 + A + G L LG + + Sbjct: 356 LAGDAMTLQVGSLGPQACALGAVAMVL 382 >UniRef50_A5N8K8 Transcriptional regulator n=31 Tax=Clostridium RepID=A5N8K8_CLOK5 Length = 317 Score = 260 bits (664), Expect = 8e-68, Method: Composition-based stats. Identities = 66/315 (20%), Positives = 129/315 (40%), Gaps = 9/315 (2%) Query: 79 EGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHR---HRKL 135 E + + +++ T I + + + ++ + +L I K + + Sbjct: 2 EEKYVIGVDLGGTKIAAALVDFKGTIICKYTLPTKAEEGEKYILDNIIKIIEKVVNFGGV 61 Query: 136 WPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLAL 195 + L G +D G P P+ + L+ + + +DND A+ Sbjct: 62 CSKKIKCIGLGAPGPLDIDKGKIICTPNLPFKN-FNIVSPLKNHFKMPIFLDNDGNAAAI 120 Query: 196 AEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGR 254 AE + + I V GIG ++N QIYRG+ + +IGH ++ G +C+CG Sbjct: 121 AEHMFGAGKGINNMVFITVSTGIGGGAILNGQIYRGNTKNALEIGHMTLDAQGPLCNCGN 180 Query: 255 YGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSAN 314 +GC E +AS +A+ ++A+ +K +T + +T+ ++ Q G+ + +D + N Sbjct: 181 FGCAEVMASGTAIAREAKKAVKMGYNTTLALYKNITSKEVFKEAQLGDSISQNILDTTLN 240 Query: 315 AIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFG 374 +G+ + N + L+ + + G G+ + I F G K T+I Sbjct: 241 YLGICVANIITCLDPEAVIIGGGVSKGGKIIFDKINEVVKRRCF----GTVSKNTRILPA 296 Query: 375 QLSRAQQVLGIGYLY 389 L V+G L Sbjct: 297 LLGTDAGVIGAAALA 311 >UniRef50_C6B6F2 ROK family protein n=8 Tax=Rhizobium RepID=C6B6F2_RHILS Length = 400 Score = 260 bits (664), Expect = 9e-68, Method: Composition-based stats. Identities = 84/398 (21%), Positives = 165/398 (41%), Gaps = 22/398 (5%) Query: 1 MRA--CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVV 58 M+A N +Q + HN+ V++E + +++ +AR+ ++ VSNI++ELE +V Sbjct: 1 MKAISGTNLEQAKSHNRRVVIEAVRTNGPLSRAAIARMTALTAQTVSNIVEELERSHLLV 60 Query: 59 NIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP 118 + RG + I P G +++ L + + + + E ++ P P Sbjct: 61 PSQAQKLARGQPIIPYSINPRGAYSIGLELGRQRASGVLTDLSGAVCARIER-HVEHPDP 119 Query: 119 QA---LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 Q L I + + + + +A+ G+ S + P V++ Sbjct: 120 QRAMPALQAIVEDLQEAFAFDRNRLLGVGMALPGRYADGGTTSLSPLNLPGWQDFPVRHE 179 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINV--DYGIGSSFVINEQIYRGSL 232 LE+++ + V+V+ND A+ E+ ++ F + + GIG+ ++ +Y+GS Sbjct: 180 LEQRIKVPVLVENDATAAAIGERLHGVARGLGSFVYLFLAGGGGIGAGMFLDGHLYKGSR 239 Query: 233 YGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTA 292 +G+IGH IV P G +C CG+ GCL+ S + + + E+L++ Sbjct: 240 NNAGEIGHIIVEPHGKLCSCGKRGCLDRYVSPAV----------AYEFMGIANAEELSSD 289 Query: 293 QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQ 352 L A G + W+D++ + ++ + I L G L + Sbjct: 290 DLDALIAKGGEGLDVWLDQAVQPLRQTVDFLELAFDPQTIVLGGSISTSLMLRLAE-RLE 348 Query: 353 TGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYV 390 P D ++ +V IG + +LG L + Sbjct: 349 PLHTPIDPNQKRAVPRVMIGMT--GKDTAILGAAALPI 384 >UniRef50_B5YE80 Glucokinase n=2 Tax=Dictyoglomus RepID=B5YE80_DICT6 Length = 320 Score = 260 bits (664), Expect = 1e-67, Method: Composition-based stats. Identities = 62/321 (19%), Positives = 127/321 (39%), Gaps = 15/321 (4%) Query: 81 DWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHR---HRKLWP 137 + +++ T I + + G + ++++I+ L Sbjct: 2 RKAVGVDLGGTKINVLLVDDQGKVLGRDKQPTESEKGKDHVINKIKSMIDNVLNQAGLKI 61 Query: 138 DHTINLALAIHGQVDPVTGVSQTMPQAP--WTTPVEVKYLLEEKLGIRVMVDNDCVMLAL 195 + + G +D + P W V + LEE + V ++ND ++A Sbjct: 62 TEIEGIGIGFPGLMDRDKKTTLYAPNLGDEWKKEVLLGKELEETFNVPVYLENDVNLIAW 121 Query: 196 AEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGR 254 AE + + + + GIGS V+N +++ G+ +G+ GHT V PDG VC CG Sbjct: 122 AEWLVGAGRGTKTMICVALGTGIGSGIVLNGKLWIGAHGMAGEFGHTTVLPDGPVCGCGN 181 Query: 255 YGCLETVASLSALKKQARVWLKSQPVST-----QLDPEKLTTAQLIAAWQSGEPWITSWV 309 GC+E +AS + ++K A+ L P S + +++T + A + G+ Sbjct: 182 RGCIEAIASGTGIEKYAKSILPQYPNSLIWELCNGNLDEVTVKIIYQAAERGDKLAVDIF 241 Query: 310 DRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKAT 369 + + +G++L N+++I++ +I + G E + + + R Sbjct: 242 NYAGYYLGIALANYVHIIDPEKIVIGGGVANVREYIGKPMKEEF----YKRVLPSFRDKV 297 Query: 370 QIGFGQLSRAQQVLGIGYLYV 390 + +L +G L + Sbjct: 298 TFSWAELGEDAGGIGAALLVL 318 >UniRef50_C6WCK9 ROK family protein n=6 Tax=Actinomycetales RepID=C6WCK9_ACTMD Length = 435 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 79/408 (19%), Positives = 144/408 (35%), Gaps = 28/408 (6%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 + +R HN+ +L LY + ++ L +S VS L E+ VV Sbjct: 19 RDLRRHNRSALLSTLYFEGPLSRQELVARTGLSAATVSTATAGLVDERLVVGAGTVESDG 78 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEY--LQIDAPTPQALLSEI 125 G + P + ++V T + ++ + L ++ D AL++ Sbjct: 79 GRPRSLLRVNPGYGHVVGVDVGETGVAVELFDLALRRIAALDHDLPPTDPLAVGALIAAA 138 Query: 126 EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAP----WTTPVEVKYLLEE-KL 180 + + + + G+V+ G + V + L+ Sbjct: 139 VPEVIALAGADQGSVLGVGIGVPGEVERRGGAWGAATLVHAQTLGWSGVPLAELVRAGGT 198 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQERDFCVIN-VDYGIGSSFVINEQIYRGSLYGSGQIG 239 + + V+N AE W + V+ + G+G++ V + + RGS +G+ G Sbjct: 199 TLPLFVENGAKTQGQAEMWFGAGRGSRHVVVALLASGVGAAVVADGAVQRGSTSSAGEWG 258 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWL-------KSQPVSTQLDPEKLTTA 292 HT V G C CG +GCLE A+ ++ R + + + T Sbjct: 259 HTTVVHGGRRCRCGAHGCLEAYVGAGAVLERYRGLGGELGEGDERAAFAELVALAGGGTL 318 Query: 293 QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGR-SCAFGENWLNTII- 350 + G T ++ + +G + +N+ N I L G A GE WL +I+ Sbjct: 319 GGGSPPAGGAQLATRVLEEAVGYLGAGIATLVNLFNPELIVLGGWAGAALGEGWLPSIVA 378 Query: 351 ---RQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 +PF R ++ G+L +G L V A L Sbjct: 379 ATREHALRHPFAR--------VRLEAGRLGPDAVAVGAATLPVAALLE 418 >UniRef50_C5C1Z1 ROK family protein n=2 Tax=Actinomycetales RepID=C5C1Z1_BEUC1 Length = 403 Score = 259 bits (662), Expect = 1e-67, Method: Composition-based stats. Identities = 80/382 (20%), Positives = 150/382 (39%), Gaps = 18/382 (4%) Query: 18 ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIA 77 +L+LL + ++ L S ++ + L + V ++ + T G + Sbjct: 26 LLQLLRDGRARTRADLVAETGQSRSTIATRVDALLATGLVASVGSRASTGGRPPTAFAFD 85 Query: 78 PEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRH---RK 134 P L +++ V + S E + P+ +L + + H Sbjct: 86 PTSRVVLGVDLGAAHGRLAVTDLAGSILAEHAEPVRISDAPEKVLGWVARTGHELLDRAG 145 Query: 135 LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLA 194 L L + G V+ TG P P V+V +L ++VDND ++A Sbjct: 146 RPSTDLAGLGLGLPGPVEHSTGRPVDPPIMPGWHGVDVPGILGAHFAAPILVDNDVNLMA 205 Query: 195 LAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV-NPDGVVCDCG 253 L E D + V GIG+ + + ++ RG+ +G +GH V + +C CG Sbjct: 206 LGEHAMGFPDVDDLLFVKVATGIGAGIIADGELRRGAQGAAGDLGHMAVPGGEPRLCTCG 265 Query: 254 RYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSA 313 GC+E +AS +A+ + R + T+ ++A ++G+P T+ + ++ Sbjct: 266 NTGCVEALASGNAIATKLREA----------GIDATTSDDVVALVRAGDPTATATLRQAG 315 Query: 314 NAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGF 373 +G L +++LN + + + G A GE L I + R + + QI Sbjct: 316 RELGAVLAGTVSLLNPSVVVIGGSLSAAGEQLLAGIRE----VVYARSLPLATQHLQIVG 371 Query: 374 GQLSRAQQVLGIGYLYVEAQLR 395 + +R VLG L + L Sbjct: 372 TRTARQAAVLGASVLASDFALS 393 >UniRef50_Q6A638 Transcriptional regulator, ROK family n=1 Tax=Propionibacterium acnes RepID=Q6A638_PROAC Length = 397 Score = 259 bits (662), Expect = 2e-67, Method: Composition-based stats. Identities = 80/374 (21%), Positives = 140/374 (37%), Gaps = 17/374 (4%) Query: 16 CVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWL 75 ++++L + ++ +A + VS ++ L + V T G Sbjct: 28 QRVIKILRKTPGMTRAEIAESTSMPRSTVSAAVRHLLESRVVEEYACADSTGGRRPTKLR 87 Query: 76 IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKL 135 +AP + +A+ + P+ + + K WH+ Sbjct: 88 VAPAVGNAFVAELGQHHARLAIASREGELLATDDIKINIEIGPEKTIKALAKGWHKLGDE 147 Query: 136 WPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLAL 195 P ++ LA+ G VD +G + P + ++ +L ++L + +++ND + Sbjct: 148 IPGAVVSAGLAVPGPVDG-SGHVVGAARMPGWSGKDIAGMLAQELAVPSVIENDARAATI 206 Query: 196 AEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGV-VCDCGR 254 E + GIG+ +V YRGS +G I H V+ D C CG Sbjct: 207 GEWNCRGRHRDSCIYVKAGTGIGAGWVSGGVAYRGSRGLAGDITHLRVHTDNPLPCTCGN 266 Query: 255 YGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSAN 314 GCLETVAS +A+ +Q S TT+QL+ A SG+P S V + Sbjct: 267 SGCLETVASGAAILRQLGRLGSSIS----------TTSQLVTAENSGDPQAVSLVRDAGM 316 Query: 315 AIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFG 374 +G L N +N LN +I L G G L + + ++R + I Sbjct: 317 RLGEVLSNLVNFLNPVRIVLGGSMSQMGS-LLAGVRSEL----YERCLPMCTEDLVIETS 371 Query: 375 QLSRAQQVLGIGYL 388 ++G+ L Sbjct: 372 ACGADAPLIGMSIL 385 >UniRef50_D1AGC1 ROK family protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1AGC1_SEBTE Length = 390 Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 82/388 (21%), Positives = 162/388 (41%), Gaps = 26/388 (6%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 +++ I++ N+ +ILE + + + ++S LA++ ++ +S+ + +L EK ++ E+ Sbjct: 5 DSKFIKNINRAIILEEIIKNEPVSRSDLAKITGLNKVTISSQISDLLDEKLLIEKKSENS 64 Query: 66 ---TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 + G + + ++L L + SI + N + E + +P+ + Sbjct: 65 PGTSGGKKPILLFLNKKCAYSLGLELKKDSISSVLTNLNGEIT-QKEAFSVKKTSPEFIA 123 Query: 123 SEIEKCWHRHRKLWPDH---TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 +IE+ + + K + I L++ +HG++D + W + +K +L++K Sbjct: 124 DKIEEIFKYYTKSIKNSKFGIIGLSVGVHGKID-KNNIIIECNNLKWKN-INLKKMLQKK 181 Query: 180 L-GIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 + + + N+ LAEK + F +N+ GIG VI+ I G SG+ Sbjct: 182 FPDLNINIKNNNYFSVLAEKSFYDIPNDPFIFLNMSAGIGMGIVIDNNILLGVNGLSGEA 241 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH + +G C CGR GC ET A +A K + LK + +S + L ++ Sbjct: 242 GHVSIELNGRKCYCGRRGCWETYACENAFFKDLKE-LKKKNISYDKFSKMLDNNEI---- 296 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 + IT+ + N I L + +NI + I +Y R + N Sbjct: 297 ---DEEITALLADYENYIYSGLLSIINIFDPKLILIYNRILNIYPALVK--------NLK 345 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIG 386 + + I +L LG Sbjct: 346 KKIYKYNKIEASIELSELKEDSCCLGAC 373 >UniRef50_C6CR95 ROK family protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CR95_PAESJ Length = 397 Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 73/385 (18%), Positives = 148/385 (38%), Gaps = 13/385 (3%) Query: 14 NKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGT 73 +K +I + + K+ L I+ ++ +L ++ E ++ G Sbjct: 11 HKQLIYDYIANLGPIAKAELLEAHDITSSTMTRLLDDMAKEGLILVTGLGPSKGGRKPLL 70 Query: 74 WLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE---IEKCWH 130 + I P+ + L ++ + + + ++ K + + TP+ L++ + + Sbjct: 71 YQINPDYGYIFGLEISRFTSTLGLFDLNMNQKSVVRWRMDETMTPERLVAHTVSLMLAFM 130 Query: 131 RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAP--WTTPVEVKYLLEEKLGIRVMVDN 188 + + + L + G +D +GV P V + L EE G+ +++N Sbjct: 131 KDHAISQSRILGLGIGAVGPLDRSSGVIVNPQYFPAKGWQQVPICALFEEAAGLPTLLEN 190 Query: 189 DCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDG 247 + E W + ++ + S+ + + +I G + G IG I++ DG Sbjct: 191 GANTALVGEHWSIRQENVEHALYVSAGISLRSAMMSHGRIVYGKVDMEGSIGQMIIDVDG 250 Query: 248 VV-CDCGRYGCLETVASLSALKKQARVWLKSQP--VSTQLDPEKLTTAQLIAAWQSGEPW 304 + G YG LET AS+ AL++Q R LK + + PEK+ + A +G+P+ Sbjct: 251 PRLEESGNYGSLETFASVQALERQVRTRLKVGGSLLLNNVVPEKVNLDTITAGLNAGDPF 310 Query: 305 ITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGP 364 I +SA+ G+ L N +N + I L G + + + + Sbjct: 311 IREMFRQSASYFGVGLANLINTFHPELIILGGALISASPMYYRVATEVAVKKTYYGEAYI 370 Query: 365 SVKATQIGFGQLSRAQQVLGIGYLY 389 Q G+L V G + Sbjct: 371 P----QFSMGRLKEDAVVTGAALMV 391 >UniRef50_D2PYX6 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PYX6_9ACTO Length = 396 Score = 258 bits (661), Expect = 2e-67, Method: Composition-based stats. Identities = 77/393 (19%), Positives = 146/393 (37%), Gaps = 25/393 (6%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 A + +R N+ +L ++ + + +A + +S VSN+++EL+ V Sbjct: 7 APGSQASLREANRERVLGVVRQHGPLTQVEIAAASGLSAATVSNMVKELDQAGLV---GL 63 Query: 63 ESQTR-GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL 121 R G + +A G + + +A+ E Sbjct: 64 SPSIRNGRRAVLVSLASGGGLLAGVAFGERDVRVAIASESREILAEQLMPLQADHVADDG 123 Query: 122 LSEIEKCWHRHRKLWP---DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 + + + + + + VD V+G + + P V V + Sbjct: 124 MERAARLLADLTESVGQRVEDIGAIGFGLPTPVDSVSGEAGSDAVLPGWRGVHVAEAMSG 183 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 L V++DN + AL E ++ + C I YG+G+ V+ +++RGS +G+ Sbjct: 184 YLRAPVVLDNTANLAALGELRAGALRDVQHGCYIKFSYGVGAGIVLGGEVFRGSAGTAGE 243 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 IGH ++ +G +C CG GCL+T AL S L +I Sbjct: 244 IGHLTIDENGPICRCGNRGCLDTFVGSRALLN-----------SLAASHGPLRLRDVITR 292 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNP 357 +G+ ++ + +G+++ +N+ N I + G+ GE + + Sbjct: 293 ALAGDLGCRRVIEDAGRRVGVAVAGLVNLFNPEVIVVGGKLAEAGELVMLPLRE-----A 347 Query: 358 FDRDEGPSVKAT-QIGFGQLSRAQQVLGIGYLY 389 DR PS AT ++ +L VLG L Sbjct: 348 LDRCAIPSAAATVELRPAELGDTADVLGAIELA 380 >UniRef50_D2PQN5 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PQN5_9ACTO Length = 402 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 78/393 (19%), Positives = 144/393 (36%), Gaps = 31/393 (7%) Query: 18 ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR--------GH 69 +L + Q + +AR +S AV+ + L V + G Sbjct: 19 VLTRILTQGPIPRVQIARRTGLSQAAVTKAVAPLIEAGFVTDEPVAPTEGSGESQLGIGR 78 Query: 70 SSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCW 129 + + + + VTPT + + + + + + + ++ I + Sbjct: 79 PVSPLTVLADSVSVIGVKVTPTGLIGVTTDLTAGIR-TVRHSPLRDSSTETVIPRIVELA 137 Query: 130 HRHRKLWPDH------TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIR 183 D I + +A+ G VD GV + P W V + L E+LG Sbjct: 138 RELMDFLDDQANGAGPLIGIGVAVSGDVDAAHGVVRDSPFMGWR-EVPLAATLTEELGAP 196 Query: 184 VMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 V+V ND L +AE W + D F V+ + G+G +N ++ G+ SG++GH Sbjct: 197 VVVTNDVRALTVAEHWFGVGVDADSFAVVTIGSGVGCGLYLNGEVVSGAYGVSGELGHLP 256 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 + P ++C CGR GC+ETVAS A+ + R +L A I +G+ Sbjct: 257 LAPGELICTCGRRGCVETVASSDAILARTRETTGRP---------ELDLAGAIELAHAGD 307 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDE 362 D++ IG +L +N++ + + G A + + Q F Sbjct: 308 EHAREAFDQAGEVIGSALAAMVNLVGPELVVIAGEGVADYDLY-----EQRMRRAFSAHA 362 Query: 363 GPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + ++ + G + + +R Sbjct: 363 FGAAGDCRLMLRSHTFDDWARGAAATVIRSYVR 395 >UniRef50_D2PPF8 ROK family protein n=2 Tax=Actinomycetales RepID=D2PPF8_9ACTO Length = 414 Score = 258 bits (660), Expect = 3e-67, Method: Composition-based stats. Identities = 72/400 (18%), Positives = 144/400 (36%), Gaps = 26/400 (6%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 ++ +R N +L L +++ +A ++ V++I+ EL +++ + Sbjct: 19 TADHTDVRATNLAAVLGFLRANAPCSRAAIASGTGLNKATVTSIVGELIAQRLARETEQT 78 Query: 64 SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLS 123 G + ++ + + V + ++ G+ P P+A + Sbjct: 79 QNHVGRPATLLVLDGSAYAAIGMEVGVRGLTAIAYDSAG---GQLLRWHRSGPGPEASPA 135 Query: 124 EIEKCWHRHRK-------LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 + + + L + G +D G W V ++ L Sbjct: 136 KTIAALAALARRAISAVHSSGRDVLGLTVGAPGLIDHD-GSVVLAAGLGWRD-VPLRSDL 193 Query: 177 EEKLG---IRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSL 232 LG VMVDND + ALAE ++ D ++ + G+G+ + + + RG Sbjct: 194 IAALGRPAFPVMVDNDANLGALAEHRYGDHAGTADLIQLSGETGVGAGVICDGRPLRGHH 253 Query: 233 YGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTA 292 G+IGH + PDG VC CGR GCLE VA + A+ + +P +L T Sbjct: 254 GYVGEIGHLRIQPDGPVCGCGRRGCLEAVAGMPAILARL------EPADAPETDPQLRTE 307 Query: 293 QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQ 352 QL+ + G+ + +G + +++L+ + L G G + I ++ Sbjct: 308 QLVRRAEEGDTATLKALAEVGGLLGRGISVLVDLLDPELVVLGGSYAGLGRWLVPAIEQE 367 Query: 353 TGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEA 392 D ++ +G ++ Sbjct: 368 LA----DGALVTVSGRCRVVVSTFGHDATSIGAVARSLDR 403 >UniRef50_C7Q6P6 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q6P6_CATAD Length = 429 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 83/404 (20%), Positives = 147/404 (36%), Gaps = 41/404 (10%) Query: 7 NQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI------ 60 +R + +L++L ++ L RL +S VS ++ +L S VV Sbjct: 15 PPNLREEGRLRVLQVLLASTTTSRPELVRLTGLSRATVSVLVADLISAGLVVEENGANGS 74 Query: 61 ----------------DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSP 104 + ES++ G + + + + ++ + + + +P Sbjct: 75 GGSSGSSGSGGSSGTPEAESRSMGRPALPLALNRSVAYAIGADIGHAHVRVALCDLHGTP 134 Query: 105 KGEFEYLQIDAPTPQALLSEIEKCWHR---HRKLWPDHTINLALAIHGQVDPVTGVSQTM 161 E + P L R + + + L + I VD G Sbjct: 135 VWETSRAKEVDRAPHETLDLAADLVRRALTENGVSGERVLGLGVGIAAPVDAD-GALSAE 193 Query: 162 PQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSS 220 P T + LE + G+ + ND ALAE ++ D I + GIG+ Sbjct: 194 GIMPGWTGIRPGPELERRTGLATELTNDANAGALAEHMYGAGRDIEDMVYIRLSAGIGAG 253 Query: 221 FVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPV 280 + ++ RG+ +G+IGH DG+VC CG GCLET+AS A+ + + Sbjct: 254 VIAAGRLQRGAGGLAGEIGHLPAVRDGLVCRCGNRGCLETIASPVAVARLLQDSWG---- 309 Query: 281 STQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCA 340 E + L A +G P V+ + A+G +L + +LN I + G A Sbjct: 310 ------EPVAPGDLPALLAAGTPGTARVVEDTGEAVGRALAGLVTLLNPRLIVVGGDLAA 363 Query: 341 FGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLG 384 GE + R + + + G+L + +V G Sbjct: 364 IGEPLFEPLRRGIARYAL----PSAARQVAVVAGRLGSSAEVRG 403 >UniRef50_C4ZGB0 Putative NAGC-like transcriptional regulator n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZGB0_EUBR3 Length = 412 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 81/415 (19%), Positives = 166/415 (40%), Gaps = 27/415 (6%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 ++ I+ ++++NK IL++L + ++ +A ++ AV+ + ++ ++ Sbjct: 2 VKTGISLDSVKNNNKSQILKILQKNGAMSRKDIANQIGLTPAAVTMLCNDMMEAHMILEK 61 Query: 61 DD--ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP 118 + E + G I + + + +N+ V N + E + P Sbjct: 62 GEMKEQKRAGRKKVLVDINYDFKYIVSVNIEAVDTSITVTNIRGNVLVETKVHTRTDIEP 121 Query: 119 QALLSEIEKCWHR---HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 Q L E+ K ++L + + + + G VD G+S W V+++ + Sbjct: 122 QLFLEELAKEIKLQLWEKELKLSDILGIGICVPGIVDRNNGISIHAYGI-WNNQVKIREI 180 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYG 234 LE+++ V+++N+ A AE + + I G+GS+ V++ ++Y G+ + Sbjct: 181 LEKQIQCPVILENNVKAFAEAEMLYGVGKYGNNIVFIKWGPGVGSAIVVDNKLYEGNQHN 240 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLD----PEKLT 290 + +IGH I+ PDG+ C CGR GCLET S+ AL + + + + + L Sbjct: 241 AAEIGHYIIEPDGLKCRCGRQGCLETRVSMFALCDRIKEIYSKENTPVLYEETAGDKNLI 300 Query: 291 TAQLIAAWQSG---------EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAF 341 T +L+ +W + I+ + + + N L IL + + F Sbjct: 301 TRELLTSWVENEGNGYITRMDKTISEILVGAIERMARVAVNVLTILAPDCTIV------F 354 Query: 342 GENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 G + NT I + + + I LS +G L + Sbjct: 355 GSMFENTSIYKLFIQYCTKYDENYTDKL-ISRSHLSDKMAYIGGTALIASTYFFE 408 >UniRef50_A6NTH3 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NTH3_9BACE Length = 377 Score = 257 bits (658), Expect = 4e-67, Method: Composition-based stats. Identities = 77/394 (19%), Positives = 146/394 (37%), Gaps = 32/394 (8%) Query: 9 QIRHHNKCVILELLYRQ-KRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 ++R N+ + LY + K LA +S+P ++ L EL + V N + + Sbjct: 11 ELRKMNRNRVFRALYHTTQPLTKQDLAYQLSMSLPTLTQNLSELMAMGLVDNSETAGSSG 70 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL---LSE 124 G + P W L + ++ I + + G F + + L++ Sbjct: 71 GRKPRILSVVPGARWALGVEISSRHIRLVALDLQVRELG-FRAFDLPFHAGEEYAVRLAQ 129 Query: 125 IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184 +C+ L + + + ++I G VD T P ++V+ + + + V Sbjct: 130 TVECFIDELALDREKLLGVGVSIPGIVDAAQQSVTTAPTLG-VNRLDVRA-IAQHIPYPV 187 Query: 185 MVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVN 244 + ND AE W S +D +++ G+G + + Y G+ SG+ GH ++ Sbjct: 188 CLVNDANAGGFAECW-GRSGVQDMAYLSLSRGVGGAIFTSGTAYLGASGRSGEFGHMCIH 246 Query: 245 PDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPW 304 P GV C CGR GCLE S + L D +T G+ Sbjct: 247 PGGVPCSCGRKGCLEAYCSTARLS----------------DDMGITLEDFFQTLSQGDDA 290 Query: 305 ITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGP 364 + + + + + + N L+ I L G+ F E + I + R P Sbjct: 291 FAALWAQYLDDLSVGILNIHAALDCQ-IVLGGKLSRFMEEKFDDI------DGRLRRLDP 343 Query: 365 SVKATQ-IGFGQLSRAQQVLGIGYLYVEAQLRQI 397 + + + + +G +V+ +R+I Sbjct: 344 AYQEAPYLSICRYYDHSNGIGAALYFVDQFIREI 377 >UniRef50_B6R7J1 Xyl repressor, putative n=1 Tax=Pseudovibrio sp. JE062 RepID=B6R7J1_9RHOB Length = 402 Score = 257 bits (658), Expect = 4e-67, Method: Composition-based stats. Identities = 80/354 (22%), Positives = 147/354 (41%), Gaps = 11/354 (3%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M + +Q+R N+ V+L L R + L RL +S+ AV++I +L+ + + Sbjct: 1 MIEKASREQVRRQNRFVVLSTLRRHTTLARVDLGRLTGLSLAAVTSITADLKDRGLIAEV 60 Query: 61 DDESQ----TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGE----FEYLQ 112 +++ TRG + + + + ++ + + + E E Sbjct: 61 EEQPNPDANTRGRPRTYLRLRDDVAHVITVKLSVDRVSLALVDYTGHQHAEAKFMVESSD 120 Query: 113 IDAPTPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEV 172 + ALL+ K + L + + +A G V G P VE+ Sbjct: 121 MGGDAFIALLAREIKALLKTEPLRARSVMEITVATQGIVGKHNGSIIWSPTIA-ERQVEL 179 Query: 173 KYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGS 231 L + LGI + ND M+A A Q+ + +F V+ +D G+G I +YRG Sbjct: 180 TAKLSKTLGITCTLYNDTNMIAEALHRQDAEKYSGNFVVVYIDRGVGMGIFIKNALYRGE 239 Query: 232 LYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTT 291 + + GH+ PDG C CG+ GCLE + AL ++A+ K S + Sbjct: 240 TGAAAEYGHSPFTPDGAACRCGKKGCLEAYIADYALYREAQKLPKETSPSAMFYGPEY-I 298 Query: 292 AQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENW 345 L A + G+ + A+G+SL +++L+ ++I L G++ + + Sbjct: 299 QNLRARARVGDAQAQKVFTDAGFALGVSLARTISLLDPSRIVLTGKAMQAYDLF 352 >UniRef50_C9BHD6 Xylose operon repressor n=1 Tax=Enterococcus faecium 1,141,733 RepID=C9BHD6_ENTFC Length = 386 Score = 257 bits (658), Expect = 4e-67, Method: Composition-based stats. Identities = 69/390 (17%), Positives = 147/390 (37%), Gaps = 25/390 (6%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVN--IDDESQTR 67 IR N+ +L+ + +K ++ LA ++ +VS+I ++L ++ +V + D S Sbjct: 8 IRELNQATLLKTIIEKKEVFRAELAAATGLNKASVSDITKKLLDDQLIVETRVGDASTAG 67 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEF--EYLQIDAPTPQALLSEI 125 G P+ L ++ +E ++ + + IDA + E Sbjct: 68 GRKPIMLTFNPQSATALSFDIGYNYLEGMLSYIDGTVLSSISKRRISIDATNVFDHIQES 127 Query: 126 EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVM 185 R P + + + IHG V P ++++ L + + Sbjct: 128 IHQLIRDLPETPHGIVGMTIGIHGVVFED--HPIFTPYYD-LHKIDLQKELADHYDFPIY 184 Query: 186 VDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNP 245 + N+ + AL E + S ++ I++ GIG V + ++ G +G++GH+I+ P Sbjct: 185 LHNEANLAALGEYTFS-SHYQNLVSISIHSGIGCGIVASGKLQVGKHGKAGELGHSILYP 243 Query: 246 DGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWI 305 DG C CG GCLE AS A+ ++ + + + L + G+ Sbjct: 244 DGRPCPCGNSGCLEQYASSKAVYEEFARLKG---------LDYVNSDILTDYVKKGDTDA 294 Query: 306 TSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPS 365 T+ + ++A + + + N + + + + I + + + I Sbjct: 295 TALLKKNAALLSIGINNIIMMYDPDVIVINSKLYEKNPQMIEQI--------HANLTSQF 346 Query: 366 VKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 K + +L + G + + L Sbjct: 347 TKDILVRNTRLKGNAILYGALAVTAQHFLN 376 >UniRef50_B5YAB7 Xylose repressor n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YAB7_DICT6 Length = 375 Score = 257 bits (658), Expect = 5e-67, Method: Composition-based stats. Identities = 80/403 (19%), Positives = 164/403 (40%), Gaps = 36/403 (8%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 MR + I +NK ++LE+L + +++ LAR+++++ A+S I+ EL + +V I Sbjct: 1 MREGRKPEYIGLYNKNLVLEILIKTGPKSRAELARISKLTKTAISEIVDELIEKNILVEI 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 +RG I P+ L ++++ + +A + +F Y + Sbjct: 61 GKVETSRGRRPTKLTINPDLK-ILAIDLSGLEGRSGIVDASGKVEEDFYY---PIKRKED 116 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 L I+ +++ + I +++++ G ++ G W + ++L E Sbjct: 117 LFELIDPLLKKYK-----NIIAISISVPGIINKYNGEVILSVGLNWRNFLLKEFLKERYP 171 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQERDFC-VINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 + + ++ D L+E W ++ + + + GIG N I G G+IG Sbjct: 172 NLPIYIEKDTNSGLLSELWFGEGKKFNILFYLLFEKGIGLGIYYNGNIIEGFNNIEGEIG 231 Query: 240 HTIVNPD-GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 HTIVN D +C CG GCLET+AS ++++ + + + ++ Sbjct: 232 HTIVNGDIAEICWCGNKGCLETIASFPKIQEKFSDFKL--------------LEESLKSY 277 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG--RSCAFGENWLNTIIRQTGFN 356 G+ +++ +G+SL N ++I+ I + G N I+++ Sbjct: 278 NQGDKD--PFLEEIFRYLGISLANAVHIIAPEAICVAGNRGMTRNILNLFTEILKKEVDK 335 Query: 357 PFDRDEGPSVKATQIGF--GQLSRAQQVLGIGYLYVEAQLRQI 397 +I F L ++G G L R++ Sbjct: 336 YIFEYL-----KDKIYFYASPLGNDGLLIGAGILGFTNYFREL 373 >UniRef50_A3CKM1 ROK family protein, putative n=2 Tax=Firmicutes RepID=A3CKM1_STRSV Length = 398 Score = 257 bits (657), Expect = 5e-67, Method: Composition-based stats. Identities = 79/402 (19%), Positives = 169/402 (42%), Gaps = 25/402 (6%) Query: 9 QIRHHN--KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD-ESQ 65 + R N + +L+ LY ++ ++ +++ QI+ +I+ EL E V+ + + + Sbjct: 3 RTRKQNELRATVLDQLYAKRPISRIDISKETQITPATTGSIINELIKEGLVLELGELNDE 62 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSP-KGEFEYLQID---APTPQAL 121 + G IAP + L ++ + +A+ + QI+ P+ Q + Sbjct: 63 SVGRKKTLLDIAPRSRYYLGFEISEKQLAIVIADNTGEIAESSIRTYQIEVTGGPSDQEI 122 Query: 122 LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + I+ ++ + +AL + G V+ P + ++ ++E Sbjct: 123 IRLIQDFLKKNSQ---YPISAIALGLPGHVNLSESDFIISKN-PHWGQINLQT-IQEAFD 177 Query: 182 IRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + V N L +AE+ + + + +F V +V GI S++ IY Y G++GH Sbjct: 178 LPVYFANKSHCLTMAERLFSYHPTDSNFIVYHVARGIHCSYMYKGSIYSQENYLIGEVGH 237 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQL----DPEKLTTAQLIA 296 T++NP+G C CG++GCL+ AS SAL +A + ++ S D + L+ Sbjct: 238 TVINPEGERCPCGKHGCLQVYASESALIDKAAILYRASQTSLLKTLVEDANDIDLTSLMT 297 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 A++ G+ + + + +S+ N +++ +I+L G+ ++ +I + Sbjct: 298 AYRLGDLGSIELIHTACRYLAISISNLCQLIDSERIYLDGQLFSY------PVIAEQVLA 351 Query: 357 PFDRD--EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 +++ P K +I S+ L V + Sbjct: 352 QLEQEVPLFPKQKQAEIVIIPYSKYSIARSAVSLCVYHEFLD 393 >UniRef50_D1NUM3 Transcriptional repressor in the Rok family protein n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NUM3_9BIFI Length = 417 Score = 257 bits (656), Expect = 6e-67, Method: Composition-based stats. Identities = 64/393 (16%), Positives = 126/393 (32%), Gaps = 8/393 (2%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 ++ + HN+ +L +Y +++T+A+ +++ A+S I +L + D Sbjct: 22 TQVSRATLSEHNRSRVLHHVYHHGPVSRATIAKALELTPAAISKITAKLIEAGLLEETGD 81 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 S + + T + V + + E ++ L Sbjct: 82 MQGEGRRRSIGLRMNKSAFHVASVKFARTLVCIGVYDLAGNQLSMQEITAVEHTQIPETL 141 Query: 123 SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 + + I + +A+ G G + + V L + Sbjct: 142 DTVHSMLEKLL-AKDRRIIAIGMAVPGPYLRAVGRTAMVSSMQEWRAVNFIDEFSHSLSV 200 Query: 183 RVMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V ++ D L+ + +R + G+G + ++ G L + +IGH Sbjct: 201 PVFIEQDARAGVLSYRLFGQGDADRHLAYYLLGEGVGLGVIDGDETINGELGAATEIGHV 260 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 ++ +G C+CG GCLE S ++ ++ + E L SG Sbjct: 261 SIDVNGRSCECGNVGCLERYCSAVSIHEELNESGIVADSESMTHREA--CEALFRLAASG 318 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 + V R +G +N N ++I + G+ L+ I R R Sbjct: 319 NSQAVAMVQRIGTYVGYGAVTIINTFNPSRIIVGDIVSGGGDLLLSAIRRVVD----ARI 374 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 T I S G + VE L Sbjct: 375 LPELNARTTIVLADASADASTKGAAGVAVEHFL 407 >UniRef50_Q185Y3 Putative regulator of a specific sugar metabolism n=6 Tax=Clostridium difficile RepID=Q185Y3_CLOD6 Length = 404 Score = 257 bits (656), Expect = 8e-67, Method: Composition-based stats. Identities = 75/399 (18%), Positives = 165/399 (41%), Gaps = 10/399 (2%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 + N + ++ NK +IL+LL ++ LA+ ++ +SN++ EL +E + I+ Sbjct: 5 KQGSNIKDVKIKNKLIILKLLSTNTPMSRVDLAKSTGLTKMTLSNLVTELINENMIREIE 64 Query: 62 DES---QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP 118 + + G I+ + + + +++ + + + Sbjct: 65 SSTLNAHSSGRKPILLDISNISPCICGILIRRNICKVIISDLKGNIVKQLSETYPKCLSN 124 Query: 119 QALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 L I++ + + K+ I + ++ G VD + G P + + + ++E Sbjct: 125 DVLKDIIKRMFTKIMKINKRDIIGIGISSIGPVDDINGTILNPPDFGNVSNLNIVDFIKE 184 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 + + + ND ALAEK + ++ +++ GIG+ V+ +++ G+L SG+ Sbjct: 185 MSDLPIFLINDANSGALAEKMYGLGKNISNYIYLHIMNGIGAGLVLENKLHTGNLGQSGE 244 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 IGHT +N G +C CG GCL+ S+S L K+ P S ++ + + +LI Sbjct: 245 IGHTSINFSGPLCSCGNNGCLDYYTSVSNLIKRIESLSHIYPNSPLINCKDFSLVKLIDE 304 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQ-TGFN 356 + + +D + +L N L +++ + I + G NT++++ T Sbjct: 305 ANNKDSLAMFLLDEFCTYVSYALVNTLTLIDCSSIIIGYDFNIPGTFIENTLLKKLTASA 364 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 F + + SV+ + ++G + Sbjct: 365 SFSKYKKISVRHSNF-----GANAPLIGSIAIVSYNFFN 398 >UniRef50_A5N1R7 Predicted transcriptional regulator n=2 Tax=Clostridium kluyveri RepID=A5N1R7_CLOK5 Length = 402 Score = 256 bits (655), Expect = 9e-67, Method: Composition-based stats. Identities = 75/389 (19%), Positives = 156/389 (40%), Gaps = 10/389 (2%) Query: 15 KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTW 74 + I LL + R +K+ ++ I + ++ +++ LE K +V T G + Sbjct: 15 EKKIFNLLQKNGRLSKNKISSRTDIKLTTLNYVMEPLEKSKMIVESCIGESTGGRRPILY 74 Query: 75 LIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRH-- 132 I + + ++++ + + N + + + D+ TP + ++ + +R Sbjct: 75 DININDFYIIGIDISILYTQVVITNLKMEILYKELFNMDDSYTPCETVKKVVEIINRAYA 134 Query: 133 -RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPW--TTPVEVKYLLEEKLGIRVMVDND 189 L + + + G +D G+ + T V +K +LEEKL V+V+N Sbjct: 135 NLNLSHMKLLGIGVGSVGPLDIKNGIIKNPVDFFADKWTDVPIKKMLEEKLKHPVIVENG 194 Query: 190 CVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGV 248 +AE + + + N GI + + + + R GH ++ DG Sbjct: 195 ANAAVVAEYFYGVGRGIENIAFFNCGIGIRTGTISSGHLIRTINDEEEAFGHMTIDIDGE 254 Query: 249 VCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDP-EKLTTAQLIAAWQSGEPWITS 307 C CG YGCLE +++ A+ K +K + P E++ + A + G+ Sbjct: 255 KCKCGNYGCLECYSTIKAIIKNISKKIKKGRHTIINKPVEEIDYKDVCLAAEMGDELSID 314 Query: 308 WVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVK 367 + +A +G L N++ +L+ + L G + + ++ T N + +G SV Sbjct: 315 IITDAALILGSGLSNYIKLLSPKLVILTGPLIINSKLFYEVCVKSTLKN-LNSTKGKSVI 373 Query: 368 ATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 + G+ S +G + +E L Sbjct: 374 FNRCGY--FSGDAISIGASAMVIERCLES 400 >UniRef50_C9Y7Z7 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y7Z7_9BURK Length = 413 Score = 256 bits (655), Expect = 1e-66, Method: Composition-based stats. Identities = 76/407 (18%), Positives = 154/407 (37%), Gaps = 55/407 (13%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ + Q ++ N+ V+L L Q +++ LA + ++ VS +++EL E V Sbjct: 22 MKTTGDQQLVKRINRSVLLRQLRAQPGLSRAQLATESGLTKSTVSLLVRELIDEGWVTET 81 Query: 61 D-DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ 119 D +Q++G S I + + V ++ + E ++ P+ Sbjct: 82 DVTTTQSQGRPSTPLHIDTRSRGLIGVEVAVEALRVVGVSLTGQVLCAAE-EALNGTKPE 140 Query: 120 ALLSEIEKCWHRHRKLWPDH---TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 + + + R K + + + + G D TG+ + P W V++ + Sbjct: 141 DVCRQAARLIARTYKQLQQRNIEALGVGVGLPGAFDEATGMLRFAPNLGWRN-VDLMPPI 199 Query: 177 EEKL------GIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYR 229 E L ++V + N+ AL+E ++ +D + G+G+ V+N++++ Sbjct: 200 AEALAKAKLPELKVHLQNEADTAALSEYEFSDGDAKDSLIFVTCGVGVGAGIVLNDRLFT 259 Query: 230 GSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKL 289 G +G+IGH I+ DG +C CGR GC ET L Sbjct: 260 GVQGMAGEIGHNILQIDGPLCSCGRRGCAETFFGARTL---------------------- 297 Query: 290 TTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 + +P + + +G+ L N N + + + G SC + + Sbjct: 298 --------AKLPDPT------QGGHYLGVVLQNLWTTFNPSTLVVGGPSC---DTY--PG 338 Query: 350 IRQTGFNPFDRDEGPS-VKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 I + + R + + A + + +G L + +LR Sbjct: 339 IVKAAQDTLQRYADAAGMAAPTVRPARYGLLASAVGAAALVLHHELR 385 >UniRef50_D1ANX8 ROK family protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ANX8_SEBTE Length = 388 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 96/393 (24%), Positives = 165/393 (41%), Gaps = 18/393 (4%) Query: 10 IRHHN--KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 ++ N LE + + ++ L+ +++ AV+ I+++L K + N + T Sbjct: 1 MKKLNITDYKALEEIRTNNKISRIKLSGSLELTPAAVTKIIKKLSGLKLIENNNILKSTG 60 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSP---KGEFEYLQIDAPTPQALLSE 124 G + I L +N P IE ++ K Y++ + L E Sbjct: 61 GRPEKSLKINHRYKMILGINFGPEFIETALSYLDGELLCMKRRNFYIRSQEKILRILFEE 120 Query: 125 IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184 I+ + K D + + LA+HG V+ G+S P W + ++ L+E+K + V Sbjct: 121 IDNVLEEYSK---DDILGIGLALHGTVNREKGISIFSPHFGWKN-LNIQELIEKKYSLPV 176 Query: 185 MVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI- 242 ++DND +A+AE +Q D F VI++ GIG + +N + Y GS + +G+IGH Sbjct: 177 IIDNDVRAMAIAEHEFGRAQNTDNFLVIHISNGIGGAIFLNGKTYEGSDFSAGEIGHITA 236 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 V C CG+YGCLE +S A+K + L+ + L T + + Sbjct: 237 VENSSRRCSCGKYGCLEAESSDEAIKNKVLTELEKIQEKVDI---SLKTEDIYKMAAEKK 293 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDE 362 S V S+ IG ++ N LNILNI + + GR + + + N D E Sbjct: 294 EPYFSVVRNSSYEIGKAVGNLLNILNIKLVIVAGRIVNTDSLFFVNLNKGIKKNILDGLE 353 Query: 363 GPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 K +L + + G L + Sbjct: 354 ----KDLHTVPAKLYDSIGIYGAFSLVTTNLFK 382 >UniRef50_A5IKW0 ROK family protein n=6 Tax=Thermotogaceae RepID=A5IKW0_THEP1 Length = 379 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 81/400 (20%), Positives = 166/400 (41%), Gaps = 33/400 (8%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES- 64 N+ +I+ NK IL++++ ++S ++ + ++ +V+ + +EL E + I Sbjct: 4 NSPRIKILNKKSILKVIHENHPISRSDISEVTGLTPSSVTRLTKELIDEGYIREIGTMGK 63 Query: 65 -QTRGHSSGTWLIAPEGDWTLCLNVTP--TSIECQVANACLSPKGEFEYLQIDAPTPQAL 121 + +L ++ T+ + + P+G F + P Sbjct: 64 NSPGRRRRILLDLRKNAFLSLVFDIGVNITTYGVGFFDGEVEPRGTFNTPR----EPVEF 119 Query: 122 LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + +++ + R + ++L++ G VD P W V +K LL K+ Sbjct: 120 FNIVKEIYERISGEY--RISRISLSVPGMVDMEEKKILLAPNLEWEN-VSIKELL--KVD 174 Query: 182 IRVMVDNDCVMLALAEKWQNN--SQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 + V+ DN+ + LAEK+ + ++ I + G+G+ +I+ +I+RG + +G+ G Sbjct: 175 VPVLADNEANLSMLAEKYHSEDLRNVKEAVFIIIREGVGAGLMIDGKIFRGPSFTAGEAG 234 Query: 240 HTIVN-PDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 H VN C C +GC E V+S++ +Q L P K + A Sbjct: 235 HMTVNMYSDRQCHCSNWGCWELVSSINWAIEQYGKEL----------PGKNAIEKFQALK 284 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 Q + + + A I + + N +NILN + L G G+++L+ + Sbjct: 285 QRND--AKRILMKFAENIAVGIVNLVNILNPELVILGGEVVDLGDSFLDIVKDFVH---- 338 Query: 359 DRDEGPSVKATQIGFGQLSR-AQQVLGIGYLYVEAQLRQI 397 R +VK +I + + ++G L VE + ++ Sbjct: 339 QRALKAAVKDLKIRTTEFRNISSNLVGAAVLAVEDIIEEV 378 >UniRef50_C2FZL1 ROK family transcriptional repressor protein n=6 Tax=Sphingobacterium spiritivorum RepID=C2FZL1_9SPHI Length = 403 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 80/383 (20%), Positives = 155/383 (40%), Gaps = 17/383 (4%) Query: 23 YRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIAPEGD- 81 Y + L+ L SIP++S I+ EL +K ++ T G + + + + + Sbjct: 19 YFNSTYTIAELSGLTNKSIPSISKIVNELLEDKLLIEDGLAPSTGGRRAIHYALNAKLNC 78 Query: 82 WTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRK---LWPD 138 + L + + V + ++ P+ S I + L D Sbjct: 79 YILTVAIDQHYTSVIVYDLHNKEVTPVHTIENHLDHPEEAFSNIVSLINELLTKHHLSAD 138 Query: 139 HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEK 198 + + + +++ G VD V+G + + +K E I ++ND +A+AE+ Sbjct: 139 NILGIGVSMPGFVDNVSGTNGSFKDF---QLFNIKKEFERVFAIPTFIENDSTAIAIAEQ 195 Query: 199 WQNNSQERDFCVI-NVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGC 257 ++E +I NV +G+G +++ +++RG +G+ H ++ +C CG+ GC Sbjct: 196 NFGKAKEISHALIINVGWGVGLGIIVDNKLFRGFSGYAGEFSHIPLSKSKKMCSCGKTGC 255 Query: 258 LETVASLSALKKQARVWLKSQPVSTQLDPEKLT----TAQLIAAWQSGEPWITSWVDRSA 313 LE ASLSA L + S + LI A G+ S +++SA Sbjct: 256 LEVEASLSAAVAHLEERLATGEKSVIQYEDSQNQLQKAQLLINAALGGDQLAISALNKSA 315 Query: 314 NAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGF 373 +G + ++I+N +I + GR G+ + I QT + F T + Sbjct: 316 YMLGKGIATLIHIMNPQKIIISGRGAEAGKILMPQI--QTAIHEFC--IPKISNKTVLEI 371 Query: 374 GQLSRAQQVLGIGYLYVEAQLRQ 396 + Q++G + E L + Sbjct: 372 SDMKN-AQLIGTASIVFEYSLTK 393 >UniRef50_C8ZX67 Xylose operon repressor n=4 Tax=Enterococcus RepID=C8ZX67_ENTGA Length = 388 Score = 256 bits (654), Expect = 1e-66, Method: Composition-based stats. Identities = 68/396 (17%), Positives = 144/396 (36%), Gaps = 27/396 (6%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 IN IR N+ +L+ + + +++ ++ L ++ +VS I+++L V + Sbjct: 3 INKMGIREQNEAAVLKTIIDNEHISRAEVSNLTNLNKASVSQIMKKLIETDFVKEVGIGD 62 Query: 65 QT--RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 T G + + ++ + ++ E I T + Sbjct: 63 STSIGGRKPIQLQFNHQSSLAITFDIGYNYVNGMLSYINGQRIAILEKQDILI-TKDNVF 121 Query: 123 SEIEKCWHRHRKLWP---DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + I+ P + + LAIHG V+ P +++ L +K Sbjct: 122 TTIDSIMAEFTPKMPPTTHGLVGICLAIHGIVNQEN--ITFTPYYDLEH-IDLVSPLSQK 178 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 V ++N+ + AL E + S + +++ GIG ++N ++ G+ +G++G Sbjct: 179 YHTAVYIENEANLTALGEYCFS-SDSTNLLSVSIHSGIGVGIIVNGRLQTGTHGTAGEVG 237 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 H+ + P G +C CG GCLE AS L + K E + + A + Sbjct: 238 HSTLFPHGNLCPCGNRGCLEQYASNKVLFDTYSHYTKK---------ELVNSDIFAKAIR 288 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 SGE ++ + + L N + + ++++ + ++ Sbjct: 289 SGEKSALELAQQNVEFLSIGLNNVITFFDPEEVYINSSVYRKIPQLTKDLQQKLTSQF-- 346 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + T+I +L + G L + L Sbjct: 347 ------TQNTKIKNSRLGEQAPLFGGNVLIAKNFLN 376 >UniRef50_A9BJ26 ROK family protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BJ26_PETMO Length = 398 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 74/380 (19%), Positives = 149/380 (39%), Gaps = 18/380 (4%) Query: 1 MRAC-INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVN 59 M+ IN +++ + NK ++ L+ +++ +++L + V+ I +L S+ + Sbjct: 1 MKIKKINAERMGYSNKLMVFNLIRYYSGISRNEISKLTGLDKSTVTKITYDLISKNLIEE 60 Query: 60 IDDESQTR-GHSSGTWLIAPEGDWTLCLNVTP--TSIECQVANACLSPKGEFEYLQIDAP 116 D +S R G A ++ + V T + N ++ EFE + Sbjct: 61 GDRKSSKRVGRKPIKLEAAKGVAASIIVKVGVEKTVVGLGYMNNSINKIVEFETPKNFNV 120 Query: 117 TPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 L EI++ + ++ + L+ + G +D + + +P W+ LL Sbjct: 121 FIGKLAVEIKRIYENANG---NNIVGLSFSFPGMIDRKNLIIEYVPHFNWSEIDLKAALL 177 Query: 177 EE--KLGIRVMVDNDCVMLALAEKWQNN--SQERDFCVINVDYGIGSSFVINEQIYRGSL 232 +E K + N+ + AE + N + + + + GIG + +I+ QI+ G Sbjct: 178 KELPKCDKPIFAANEAKLALQAEMYFNKNIANLNNGVYVFISQGIGGALLIDGQIHLGPN 237 Query: 233 YGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTA 292 Y +G+ GH ++ DG C C GC ET AS+ + K + + + Sbjct: 238 YTAGEFGHMSIDEDGRKCFCNNQGCWETFASIDTVSKIYEYSNGRL----EGNNYEEKFR 293 Query: 293 QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWL---NTI 349 L+ + E + + +G+ N +NILN + G F + + I Sbjct: 294 NLLLKAEKKEGNANEIIKQMLYYLGVGTVNLINILNPEFVIFGGYGYLFPDEYFTEIENI 353 Query: 350 IRQTGFNPFDRDEGPSVKAT 369 IR P + ++ Sbjct: 354 IRTRALKPALKSFKKPMRPV 373 >UniRef50_D2Q094 Glucokinase, ROK family n=2 Tax=Kribbella flavida DSM 17836 RepID=D2Q094_9ACTO Length = 423 Score = 255 bits (651), Expect = 2e-66, Method: Composition-based stats. Identities = 66/321 (20%), Positives = 113/321 (35%), Gaps = 15/321 (4%) Query: 81 DWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWPDHT 140 T+ +++ T + V + + P+ I + H Sbjct: 30 ALTIGIDIGGTKVAAGVVDPEGNILDRLRR-DTPTKDPKETEDAIAEVVHDLE--SRHDV 86 Query: 141 INLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQ 200 I + + G VD P W ++ +E +LG+ V+V+ND A +E Sbjct: 87 IAVGIGAAGFVDGTRSSVLFAPHLAWRHE-PLRDAVERRLGLPVVVENDANAAAWSEWRF 145 Query: 201 NNSQERDFCV-INVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLE 259 Q V + + GIG + + + + RG +G+ GH V P G C+CG GC E Sbjct: 146 GGGQGESHLVCVTLGTGIGGAILNDGALQRGKFGIAGEFGHMQVVPGGHRCECGNRGCWE 205 Query: 260 TVASLSALKKQARVWLKSQP-------VSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRS 312 AS +AL ++AR S + + DP ++ + + G+P ++ Sbjct: 206 QYASGNALTREARELALSGSPVAHNLLRAAEGDPRRINGPMVTELAKDGDPVAVELLEDV 265 Query: 313 ANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIG 372 +G+ L N L+ + G GE L R P + I Sbjct: 266 GRWLGIGLANLAAALDPGTFVIGGGVSDAGELLLAPAREAFKRTLTGRGFRPEAR---IV 322 Query: 373 FGQLSRAQQVLGIGYLYVEAQ 393 L ++G L E Sbjct: 323 RAVLGPEAGMVGAADLAREEA 343 >UniRef50_C8P1T2 Regulator n=1 Tax=Erysipelothrix rhusiopathiae ATCC 19414 RepID=C8P1T2_ERYRH Length = 392 Score = 255 bits (651), Expect = 3e-66, Method: Composition-based stats. Identities = 80/391 (20%), Positives = 161/391 (41%), Gaps = 25/391 (6%) Query: 16 CVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES--QTRGHSSGT 73 +IL+LLY + ++ +++ I+ VS++ Q L ++K + I +++ G Sbjct: 12 ALILDLLYSKGPLSRIDISKSLHITPATVSDLTQHLINDKIICEIGEDTDNTRVGRRKIL 71 Query: 74 WLIAPEGDWTLCLNVTPTSIECQVANAC--LSPKGEFEYLQIDAPTPQALLSEIEKCWHR 131 + P + L + + S +++ + + F + D L+ I + Sbjct: 72 LGLLPNHSYYLGVELFEHSFTLALSDNLNEICFEEAFTLSKSDHVRHDLLVKTINDFLKK 131 Query: 132 HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCV 191 H ++ +AI G D + T + L++ L V +N+ Sbjct: 132 HSDTA---VTSIGIAIPGHYDKTSAHILT--NNHSWANFSL-DYLKKHLKYPVYFENNVN 185 Query: 192 MLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVC 250 +A+ E+ + + + +F ++ GI S+V +Y + Y G+IGH +VNP G C Sbjct: 186 AMAIRERLFGHDKTDANFLFLHFRRGIFCSYVYQGDLYARNNYFVGEIGHLVVNPFGEQC 245 Query: 251 DCGRYGCLETVASLSALKKQARVWLKSQPVSTQL----DPEKLTTAQLIAAWQSGEPWIT 306 +CG+ GCL+T AS + L +A + S + + +L+ L+ A+ G+ + Sbjct: 246 ECGKIGCLQTYASQTWLLHKASLLFNSSANTYLKQLVNEEHELSMDILLQAYHLGDSAVI 305 Query: 307 SWVDRSANAIGLSLYNFLNILNINQIWLYGRSC---AFGENWLNTIIRQTGFNPFDRDEG 363 ++ + N + ++L N + L+ + I+L+G+ LN I E Sbjct: 306 QLLENAINFLAIALNNIIVTLDTDIIYLHGQLFDDEQLSTLLLNKIREH-------DSEF 358 Query: 364 PSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 S + Q S+A L + L Sbjct: 359 ISRQTIQKEIKPYSKANGARAACALAISETL 389 >UniRef50_C6P958 ROK family protein n=2 Tax=Thermoanaerobacterales RepID=C6P958_CLOTS Length = 382 Score = 255 bits (651), Expect = 3e-66, Method: Composition-based stats. Identities = 68/395 (17%), Positives = 139/395 (35%), Gaps = 32/395 (8%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 R N I++ N +L+++ + + ++ ++++ +S VS I+ EL E V Sbjct: 5 RKGTNY-LIKNINTANVLDVIKKMQPISRIKISKVLNMSKSTVSGIVDELIKEGLVSEEG 63 Query: 62 DESQT-RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQ-IDAPTPQ 119 T G P +++ +++ T+ + N + + + Sbjct: 64 YGKTTSAGRKPIELTFNPNAKFSIGIDIESTNTIGVLTNLEGKIIKKIKRPTGVKDEAFD 123 Query: 120 ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + I + + + G + G P W + L+E Sbjct: 124 NAVDIIRELLD-----CQKEITGIGVGAPGITNIEKGTVY-APGLSWVD-FNLLPKLKEV 176 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 + +DN AL E+W + ++ +F ++ + GIGS IN ++ RG Y +G++ Sbjct: 177 FDYDIFIDNSVNYAALGERWIGSCKDVNNFVLVTIGNGIGSGIYINGKLVRGHKYSAGEV 236 Query: 239 GHTIVNPD--GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 G+ + D YG E+ ASL L + + T I Sbjct: 237 GYMAIGRDILNKKYFYEDYGYFESKASLLGLVSSLKNLSNGKFN---------TMEDFIN 287 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 + + + + + + N ++ILN I + G G N + + R Sbjct: 288 GYLAKDEICIRAFNEFIENLSMGFTNIISILNPELIVIAGDVINLGINIVENLKRLIDKM 347 Query: 357 -PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYV 390 PFD +I + +L+ +G + Sbjct: 348 IPFD---------VKIIYTKLNEDAAAIGASADVL 373 >UniRef50_C5C348 ROK family protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C348_BEUC1 Length = 410 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 65/384 (16%), Positives = 145/384 (37%), Gaps = 20/384 (5%) Query: 16 CVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQT--RGHSSGT 73 + ++ ++S L L ++ V + ++L+ + VV + G + Sbjct: 11 ARVFGEIWHHGPLSRSELVALTGLTKSTVFQLTEDLQRDGLVVETGLRTSGSQGGRRATL 70 Query: 74 WLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHR 133 P+ + +++ T + + + P ++ + + Sbjct: 71 LQANPDAVRVVGVHLGGTRTSVAITDTFGRVLDARSRPTVRRR-PDESVARVAEMIGELS 129 Query: 134 KLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVML 193 + + +A+ G +D TG+ P W V V L+ E + + N + Sbjct: 130 AEHGAPS-AVGVAVPGLIDRDTGLCLVAPNLGWRD-VPVATLIGEAVQAPTIALNTVQAM 187 Query: 194 ALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV----NPDGV 248 A+AE Q ER ++ V G+G++ + + + RG+ +G++GH V +P+ V Sbjct: 188 AVAEMAQLRPDERMTLAMLYVGTGVGTALITDGNLLRGARGLAGELGHLQVRDPGDPEAV 247 Query: 249 VCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSW 308 C CGR GCLE++ A+ ++A + +LT + G+ S Sbjct: 248 KCACGRVGCLESLVGADAIVRRATQRGIAAA------GRRLTPELVGELASDGDAAARSL 301 Query: 309 VDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKA 368 + A +G + + + N + + + G + G+ L+ + R + ++ Sbjct: 302 IQDIAVEMGEAAAALVQLTNPDTVVVAGSVASMGDMLLDPLRETVVR----RTQPELRES 357 Query: 369 TQIGFGQLSRAQQVLGIGYLYVEA 392 + L ++ G L ++A Sbjct: 358 LDVRRSLLDNQGKLRGAITLALQA 381 >UniRef50_C3QC45 ROK family transcriptional repressor protein n=19 Tax=Bacteria RepID=C3QC45_9BACE Length = 402 Score = 254 bits (650), Expect = 4e-66, Method: Composition-based stats. Identities = 82/413 (19%), Positives = 164/413 (39%), Gaps = 32/413 (7%) Query: 5 INNQQIRHH---------NKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEK 55 +N Q ++ K +I +Y + L++ +S+P V+ + E+ + Sbjct: 1 MNQQFLKEIEKGSKSALVKKRIITHYIY-NGSSTIPDLSKELDLSVPTVTKFIGEMCDDG 59 Query: 56 RVVNIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDA 115 + + + G + + PE + L +++ ++ + N + Sbjct: 60 YINDYGKLETSGGRHPNLYGLNPESGYFLGVDIKRFAVNIGLINFKGDMVELKMNIPYKF 119 Query: 116 PTPQALLSEIEKC---WHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEV 172 ++E+ K + + + + +N+ + + G+V+P +G S + + Sbjct: 120 ENSIEGMNELCKHILNFIKKLTINKEKILNINVNVSGRVNPESGYSFSQFNF---EERPL 176 Query: 173 KYLLEEKLGIRVMVDNDCVMLALAEKWQNN-SQERDFCVINVDYGIGSSFVINEQIYRGS 231 +L EKLG +V +DND + E Q E+D +NV +G+G +I+ +IY G Sbjct: 177 ADVLSEKLGYKVTIDNDTRAMTYGEYMQGCVKGEKDIIFVNVSWGVGIGIIIDGKIYTGK 236 Query: 232 LYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQ-----LDP 286 SG+ GH + ++C CG+ GCLET AS SAL + ++S S + Sbjct: 237 SGFSGEFGHMSAYDNEIICHCGKKGCLETEASGSALHRILLERIQSGESSILSTRIATEE 296 Query: 287 EKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWL 346 +T ++IAA + V+ +G + +NI N + + G G+ Sbjct: 297 NPITLDEIIAAVNKEDLLCIEIVEEIGQKLGKQIAGLINIFNPELVIIGGTLSLTGDYIT 356 Query: 347 NTI---IRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 I +R+ N ++D + I +L ++G L Sbjct: 357 QPIKTAVRKYSLNLVNKD-------SAIITSKLKDKAGIVGACMLARSRMFES 402 >UniRef50_Q9Z557 Putative ROK family transcriptional regulator n=2 Tax=Streptomyces RepID=Q9Z557_STRCO Length = 407 Score = 254 bits (649), Expect = 4e-66, Method: Composition-based stats. Identities = 76/383 (19%), Positives = 145/383 (37%), Gaps = 17/383 (4%) Query: 16 CVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWL 75 LEL+ + +++ LA L + +VS + +L V +S T G Sbjct: 19 ARALELIASGRATSRAQLAELLGAAASSVSVAVAQLVEHGLVAEEGTQSSTGGRPRKVLR 78 Query: 76 IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRH-RK 134 + + ++ + ++ + V + + A PQA LS + + Sbjct: 79 LGGQDEFAVAADLGGSHARVGVVLPGGELRDVSTVPLVIAEGPQAALSRLAATLEELVEQ 138 Query: 135 LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLA 194 + L++ G VD TG + P V+ L E+ + + DND +A Sbjct: 139 HGRGRLRGVGLSLPGPVDTATGSVVQPSRMPGWNRFPVESWLRERFAVPAVADNDANCMA 198 Query: 195 LAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNP-DGVVCDCG 253 + E + + ++ IG++ +++ ++YRG +G+I H + D V C CG Sbjct: 199 VGEHIARKGRHQQVIMVKTGTAIGAAALVDGRLYRGGTGAAGEITHIRIARGDHVPCSCG 258 Query: 254 RYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSA 313 CLETVAS +AL + R + + ++ P V R+ Sbjct: 259 NTDCLETVASGAALVRVLR----------DEGVDVTSAEDVVRLATDAHPEANRAVRRAG 308 Query: 314 NAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGF 373 + +G L +N N + ++L G E ++ + Q ++ + I Sbjct: 309 DYLGQVLAANVNFFNPDAVYLGGILSTV-EPFVAAVRSQL----YESCHPLVTEHLAIER 363 Query: 374 GQLSRAQQVLGIGYLYVEAQLRQ 396 L R ++G G ++ L Q Sbjct: 364 AVLGRDAGLVGAGLFALQRALGQ 386 >UniRef50_Q1IJT5 Glucokinase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJT5_ACIBL Length = 347 Score = 254 bits (649), Expect = 4e-66, Method: Composition-based stats. Identities = 59/322 (18%), Positives = 130/322 (40%), Gaps = 13/322 (4%) Query: 82 WTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWPDH-- 139 + + +++ T++ + + + ++ ++ + DH Sbjct: 3 YAIGVDLGGTNLRIAAVEERGTLLEKVTLGTQVQRGREYVVGQMTDAIRHVTTKYQDHGK 62 Query: 140 TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKW 199 I + + + G +D TG + P P + V +E +LG +V+++ND A+ EKW Sbjct: 63 LIGIGIGVPGFIDMDTGTVRESPNLPGWSNYPVHKDIESRLGTKVILENDANAAAMGEKW 122 Query: 200 QNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCL 258 ++ D + + G+G ++ +++ G +G++GH V PDG +C CG +GCL Sbjct: 123 LGAGRDTDDMVMYTLGTGVGGGIIMAGRLWHGMNGMAGELGHHTVLPDGHICGCGNHGCL 182 Query: 259 ETVASLSALKKQARVWLKSQPVSTQLDPE----KLTTAQLIAAWQSGEPWITSWVDRSAN 314 E AS +A+ + AR + + + + ++ + G+ + + Sbjct: 183 EQYASATAVVRMAREAVANGLSDALANASRNDVEFSSKVIYQLAIQGDKAAQEIFNTVGH 242 Query: 315 AIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF------DRDEGPSVKA 368 +IG+++ N +N LN + G + + + N ++ + F K Sbjct: 243 SIGIAVANMVNALNFPMYVIGGGVASAWDAFHNPMMEEVRKRSFIYRVTAPEAVAAGQKR 302 Query: 369 TQIGFGQLSRAQQVLGIGYLYV 390 T + L + G L + Sbjct: 303 TIVTRALLGGDAGLFGAARLPM 324 >UniRef50_A5CYL2 Transcriptional regulator/sugar kinase n=4 Tax=Clostridia RepID=A5CYL2_PELTS Length = 337 Score = 253 bits (648), Expect = 6e-66, Method: Composition-based stats. Identities = 84/323 (26%), Positives = 144/323 (44%), Gaps = 14/323 (4%) Query: 79 EGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRK---L 135 + + +++ T I +A E + Q ++ I + R+ + Sbjct: 2 NSFYVIGVDLGGTKIYTALAADDGRVLSEIKLPTEAGRGLQGVIDRIVHSVEQVRENVAV 61 Query: 136 WPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLAL 195 P + LAL G +D GV P W V ++ +LEE+L + V++DND + AL Sbjct: 62 PPQKVLALALGAPGPLDTAGGVIHFAPNLRWNN-VPIRQILEERLSLPVLLDNDANLAAL 120 Query: 196 AEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGR 254 E + + I V G+G +++ ++YRGS G+G+IGH V PDG VC CG Sbjct: 121 GEHVFGAGRGCGNMVYITVSTGVGGGLILDGKLYRGSSDGAGEIGHMTVLPDGPVCSCGN 180 Query: 255 YGCLETVASLSALKKQARVWLKSQP-----VSTQLDPEKLTTAQLIAAWQSGEPWITSWV 309 GCLE +AS +A+ + A + S + DP ++ A + AA G+P + + Sbjct: 181 RGCLEAMASGTAIARAAAELVASGGGRKILAAAGGDPGRINAAAVAAAAAGGDPEAAAII 240 Query: 310 DRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKAT 369 DR+A +G+ + + LN+LN + L G GE + R+ R + Sbjct: 241 DRAAGYLGIGVASILNLLNPAMVVLGGGVMEIGEPVWKGVRREVQ----ARALQAARSRA 296 Query: 370 QIGFGQLSRAQQVLGIGYLYVEA 392 ++ +L V+G L ++ Sbjct: 297 RLVPAELGGRAGVMGAIALALQE 319 >UniRef50_C9NFC9 ROK family protein n=10 Tax=Streptomyces RepID=C9NFC9_9ACTO Length = 418 Score = 253 bits (648), Expect = 7e-66, Method: Composition-based stats. Identities = 75/348 (21%), Positives = 142/348 (40%), Gaps = 28/348 (8%) Query: 6 NNQQIRHHNKCVILELLYRQKRA---NKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + +R HN ++L + + A ++ ++ ++ AVS+++++L V Sbjct: 13 DKDTVRRHNLSLVLRAVRDEGEAGEATRAGVSARVGLTRAAVSSLVEQLLDSGFVTESGK 72 Query: 63 ESQTR-GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPK-GEFEYLQIDAPTPQA 120 + G +A G L + + + V + + + + E+L P Sbjct: 73 TFSGQAGRPGTALKVARTGPAGLGVEINIDYVSVCVVDLAGTGRVRQTEHLDNRGAPPGE 132 Query: 121 LLSEIEKCWHRHRKLWPDH---TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 +L+ R + + ALA+ G V G + P W V + L Sbjct: 133 VLARAAGIAARTLDSAREQDLCPVGTALALPGLV--SGGSVRQAPNLGW-NQVAAEDLFG 189 Query: 178 EKLG--------IRVMVDNDCVMLALAEKWQNN-SQERDFCVINVDYGIGSSFVINEQIY 228 E L + V +N+ + ALAE W R F + + G+G + V++ ++ Sbjct: 190 EALAGLRPGTAALPVRSENEANLAALAELWFGGLGTVRSFLYLTGEIGVGGALVLDGELL 249 Query: 229 RGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEK 288 RG+ +G+IGH +V+P G C CG GCLE A SAL + A + + + ++ E Sbjct: 250 RGAHGFAGEIGHVVVDPAGPECRCGSRGCLEQYAGQSALLRAAGIGEGAGGAAGVMELE- 308 Query: 289 LTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG 336 Q+G+P + V + +G L +N+ + + + L G Sbjct: 309 -------RRAQAGDPVALAAVADAGRMLGQVLSGAVNLFDPDAVVLGG 349 >UniRef50_Q2RK90 Glucokinase n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RK90_MOOTA Length = 315 Score = 253 bits (647), Expect = 8e-66, Method: Composition-based stats. Identities = 71/312 (22%), Positives = 130/312 (41%), Gaps = 9/312 (2%) Query: 84 LCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHR---HRKLWPDHT 140 L +++ TSI+ + + + + A+L I+ + L Sbjct: 4 LGIDLGGTSIKAGLVDINGKILKKGQVPTGAGEGTTAVLKRIKNLARDLAGEQGLALGEL 63 Query: 141 INLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQ 200 + + I G VD G+ P W ++ L L + V ++ND + AL E WQ Sbjct: 64 EGIGIGIPGSVDVARGLVHLAPNLFWRD-FSLRDELAALLDLPVAIENDAHVAALGEMWQ 122 Query: 201 NNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLE 259 + ++ + GIGS +I+ +++ G ++GH + DG C CG +GCLE Sbjct: 123 GAGRGYTSLLMVTIGTGIGSGLIIDGRVHHGLFGYGAEMGHIKMVCDGRQCHCGGHGCLE 182 Query: 260 TVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLS 319 T+AS +A+ K R +L + S D +L +++AA G+ +D +A +G + Sbjct: 183 TLASATAMVKSFREYLAAGYPSMLSDRPELGAKEILAAAAGGDELAGRVIDEAACYLGTA 242 Query: 320 LYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRA 379 L N + ++ I + G GE L+ I + +K + L Sbjct: 243 LANAVLLVGPEAIIIGGGPAQAGEVILDPIRKHLA----AAMGTWQLKQVPVLQAALGND 298 Query: 380 QQVLGIGYLYVE 391 ++G YL ++ Sbjct: 299 AGIIGAAYLAMK 310 >UniRef50_A7VV97 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VV97_9CLOT Length = 406 Score = 253 bits (647), Expect = 8e-66, Method: Composition-based stats. Identities = 71/355 (20%), Positives = 143/355 (40%), Gaps = 9/355 (2%) Query: 11 RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHS 70 +++ + IL ++ + ++ + ++ S+ V +I+ +L + V D E G Sbjct: 11 KYYKRNKILNIIRSNENISRYDVKKMTMYSMSTVLDIIDDLIASGMVYEADCEEPRVGRK 70 Query: 71 SGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWH 130 + PEG + + + C + + + E + A+L+ + + H Sbjct: 71 PVWLRLNPEGGYFIGAEFNAFHLHCAMLDFTGEIIYQSEEDLLPDQGKDAILALLIRHIH 130 Query: 131 RHRKLW---PDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVD 187 P +++ I G ++ ++ + + V VK +LE++ + +D Sbjct: 131 AAIDAVKGKPGQIFAISVGIPGYLNEDKSIALSHFRLKDWENVPVKKILEDEFHLPCYLD 190 Query: 188 NDCVMLALAEKW-QNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPD 246 N+ ++A A KW + N RDF +++ G+ VIN + SG++GH V P Sbjct: 191 NNVNVMAFAYKWLRYNGDCRDFLFVSIRTGVRIVPVINNHLILSRGGLSGELGHVKVAPH 250 Query: 247 GVVCDCGRYGCLETVASLSALKKQARVWLKSQP-----VSTQLDPEKLTTAQLIAAWQSG 301 G +C CG GCL + S ++ + + + DP+K+T + Sbjct: 251 GTLCSCGGIGCLNSEISDLSILGKLKAGFEFGRFPEIMEMAGGDPDKVTLEMFCESAAQE 310 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 + AN +G +L +NIL + L G+ GE + I + N Sbjct: 311 HSDSVKLMLDLANILGEALGMAVNILAPEVVVLSGQLAQLGEPFFQEISKVLERN 365 >UniRef50_B7GQ98 ROK family protein n=10 Tax=Bifidobacterium RepID=B7GQ98_BIFLI Length = 404 Score = 253 bits (647), Expect = 9e-66, Method: Composition-based stats. Identities = 57/357 (15%), Positives = 117/357 (32%), Gaps = 4/357 (1%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 + + N+ I++ LY ++++ +A+ +++ A++ I L + D Sbjct: 8 ATSQASVSESNRSRIVKHLYHNGISSRAQIAKALELTPAAITKITARLIEAGMIEETGDL 67 Query: 64 SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLS 123 ++ S + + + + ++ V + C + + T + Sbjct: 68 EGSKNRRSIGLKLDTTRFRIIGIKFARSLVQIGVFDLCGNTLSFENLPTVYDNTINDTIV 127 Query: 124 EIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIR 183 I + + P + + +A+ G G + + + + Sbjct: 128 TIHQRVEQLLDNDP-SIVAIGMAVPGPYLRNVGRTAVVSSMQGWRKINFIDEFATAFRVP 186 Query: 184 VMVDNDCVMLALAEKWQNNSQERD--FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V ++ D ALA + S D V G+G + N ++ G L + +IGH Sbjct: 187 VFIEQDARAGALAHYLFDPSVHADGNLAYYLVGEGVGLGVIDNGRLINGFLGAATEIGHI 246 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 ++ +G CDCG GCLE S A+ P + + L A G Sbjct: 247 SIDVNGRPCDCGNVGCLERYCSTPAIHDMLIADGTVVPGAADM-TNTAAARALFAKAGDG 305 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 + + V A +G N N I + G L+ + Sbjct: 306 DEAAIAIVREVAQYVGYGCVTIFNGYNPEHIIIGDIVAEAGPILLDEVRATVAERAI 362 >UniRef50_A4BDK2 N-acetylglucosamine repressor n=1 Tax=Reinekea blandensis MED297 RepID=A4BDK2_9GAMM Length = 402 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 65/351 (18%), Positives = 141/351 (40%), Gaps = 12/351 (3%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N ++ +N + ++ +++ L ++ ++ +V+ + + L + V + + Sbjct: 9 NLDSVKQYNLMRLFRIIVEYGLISRTQLVEVSDLAAGSVTKLTRLLIEQNLVHEVAQQQS 68 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEI 125 RG + + L + + + + + E ++A ++++ Sbjct: 69 ERGRKAVLLAPKTDDIQILAARADRQHLYVGLCDLSGNLL-QREAEPLNADNEDEFVAQL 127 Query: 126 EKCWHRHRKLWPDH---TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 + D + + + + G VD G+ MP P + + ++ + L + Sbjct: 128 TRSLRHFLTTHADQVRNVVGIGVTMPGLVDANRGIVNFMPHVP-VHELPLADIITDALEM 186 Query: 183 RVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 +++ +ALAEK S R+ I V G+G+ ++N ++Y G+ G G+IGH Sbjct: 187 PCYINSFASAMALAEKQIGASFHARNSVFIEVHNGVGAGIILNNELYSGT--GVGEIGHI 244 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 ++ G C CG YGCLET S SA+ + Q V T+ T ++ A Sbjct: 245 QIDRLGKPCICGNYGCLETEVSDSAIVEHFNQRQALQSVDTE---RAETIQDVLQAAGEL 301 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQ 352 + + +A IG ++ N+ + I L G ++ ++ Q Sbjct: 302 NENALAVLKEAAAHIGTAMATVANLFRPDSIILAGAVTQAWS-LIHPVLEQ 351 >UniRef50_D1AWX4 ROK family protein n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AWX4_STRM9 Length = 388 Score = 253 bits (646), Expect = 1e-65, Method: Composition-based stats. Identities = 87/384 (22%), Positives = 160/384 (41%), Gaps = 11/384 (2%) Query: 10 IRHHNKCV--ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 ++ N+ ILEL+ + + L+ IS A+S +++L E V+ D S Sbjct: 1 MKRLNETEYEILELISKNHCVTRMDLSLKLNISPAAISKTMKKLIEENLVLEDDTLSSKG 60 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEK 127 G I E + +N P I V+ S + + + + ++ Sbjct: 61 GRPRKILKINSEYKKVIGINFGPGFIYISVSKIDGSIIETRKKKFQFKVSQKLITLLTDE 120 Query: 128 CWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVD 187 + + + + LA++G V+ G S P W+ ++++ LE K + V+VD Sbjct: 121 LDLLFERYNKNEILGIGLAVNGIVNTRDGSSIFSPHLKWSN-IKLREYLENKFNLPVIVD 179 Query: 188 NDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNP-D 246 ND + AE ++ + + I + GIGSS +IN +I+ G + +G+IGH I+NP Sbjct: 180 NDVRAMLKAEIYK-VKKLSNVMYIYIRDGIGSSIMINNKIFEGVNFCTGEIGHFIINPTS 238 Query: 247 GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWIT 306 C CG+YGCLE S ++ + L+ Q + +L+ +T ++ GE Sbjct: 239 NSRCQCGKYGCLEAEYSSKMIRNKVIWELEKQGI--ELENNYITYKEIFEKASFGEEPYK 296 Query: 307 SWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSV 366 + V ++ IG ++ N LN+L+I I + G +L + Sbjct: 297 AIVKEASIKIGSTVGNILNVLDIGNIIIAGDILHAKNIFLKNFEKGIDL----MKTHSFE 352 Query: 367 KATQIGFGQLSRAQQVLGIGYLYV 390 I + + G +L + Sbjct: 353 SMVNIYTTEFGDDVEKYGAIFLVI 376 >UniRef50_B0K0J6 ROK family protein n=8 Tax=Thermoanaerobacter RepID=B0K0J6_THEPX Length = 381 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 78/385 (20%), Positives = 149/385 (38%), Gaps = 32/385 (8%) Query: 9 QIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID-DESQTR 67 I++ NK +L+++ + + ++ ++++ ++S +S I+ EL E V+ E T Sbjct: 11 LIKNINKANVLDVIKKMQPISRIEVSKVLKMSKSTISAIVDELIEEGLVIENGYGEKGTV 70 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQ-IDAPTPQALLSEIE 126 G P+ + + ++V T+ + N + ++ I ++ I+ Sbjct: 71 GRKPIQLSFNPDARFVIGISVESTNSIGILTNLEGKILKKIKWETGIKEQAFNGIVKGIK 130 Query: 127 KCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMV 186 + + + + D G+ P W+ ++K L E + V Sbjct: 131 ELAEEDKNIIGIGIGLPGIT-----DIQKGIV-DAPGLKWSN-FDLKKRLSEIFNYNIYV 183 Query: 187 DNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNP 245 DN AL E+W +E +F +IN+ GIGS +N + RG+ Y +G++G+ + Sbjct: 184 DNSVNYAALGERWIGCCREIENFVLINIGNGIGSGIYVNGTLLRGNSYAAGEVGYMAIGE 243 Query: 246 DG--VVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEP 303 D V YG E ASLSAL + L P T ++ ++ P Sbjct: 244 DAFERVYSYEDYGYFERKASLSALVESVSKSL----------PYVKTMEGVVKEYKKQNP 293 Query: 304 WITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF-NPFDRDE 362 V + + + + N ++ILN I + G + + + + PFD D Sbjct: 294 ACVQAVSQFIKNLSMGIANIVSILNPEVIIIGGDILNYEIDIRQELKEKVKRIVPFDFD- 352 Query: 363 GPSVKATQIGFGQLSRAQQVLGIGY 387 I QL +G Sbjct: 353 --------IKVAQLGEDASAIGAVA 369 >UniRef50_A0P1G6 Probable transcriptional regulator protein n=1 Tax=Labrenzia aggregata IAM 12614 RepID=A0P1G6_9RHOB Length = 404 Score = 252 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 87/378 (23%), Positives = 157/378 (41%), Gaps = 20/378 (5%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + N + + HN V+LE++ + ++ ++ + +S V NI+ ELES V Sbjct: 14 SGTNLTRAKTHNHRVVLEIIRTRGPIGRTEISEITSLSRQTVQNIVGELESRGIVEMHAQ 73 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 +++ RGH + P+ ++L +V S+ + S + + A TP+A Sbjct: 74 KARGRGHPGMMVKLKPDHAYSLGFHVDRLSVTAIACDLLGSIVWQ-SAAPMAAATPEAAN 132 Query: 123 SEIEKCWHRHRKLWPD---HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL--LE 177 S I R P + LA G + S ++ + L L+ Sbjct: 133 SRILSMVEDFRAAHPAMAKCLFGVGLAAPGPFETGAQTSSGTDATTFSDFGSPENLAELQ 192 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSG 236 +G+ V++ ND AL E + + F I G+G+ FV+N +Y G+ +G Sbjct: 193 LAVGLPVVLQNDASAAALGEHVYGIGRSFNSFAFIQFGMGLGAGFVLNGALYPGASKNAG 252 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 +IGH +++P+G C CG GCLE SL+AL ++ + E + A++ A Sbjct: 253 EIGHVVIDPNGPACSCGNTGCLERYLSLNALCERLGLEP----------TEPGSVARIEA 302 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 + G+P + W+ A + + +L+ + L G C +L ++ Sbjct: 303 LFAEGDPAVLGWIADVAPLMRQMINMIEMMLDPEALILGGIIC---PEFLQALLDSAAPL 359 Query: 357 PFDRDEGPSVKATQIGFG 374 P D P +IG Sbjct: 360 PRRLDGSPEEGRIRIGTS 377 >UniRef50_B2GIX7 Putative NagC family transcriptional regulator n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GIX7_KOCRD Length = 421 Score = 252 bits (644), Expect = 2e-65, Method: Composition-based stats. Identities = 77/393 (19%), Positives = 151/393 (38%), Gaps = 22/393 (5%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 A + +R N+ +++ + ++ +AR ++ VS+I++EL + + D Sbjct: 41 APGSQAALRLANRRRVVDAVRGLGAVTQARIARETALAPSTVSSIVKELTACDLLTVEPD 100 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 G + L ++V + +A+ L + + +L Sbjct: 101 H---GGRRGQRVRFSASAGHLLGVDVGHRHVAVALADLNLEILAQRRAELSPRHGAREVL 157 Query: 123 S---EIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + + + + + + VD + P + ++V+ L Sbjct: 158 DVARGMADELRDELGIPAERVLRAGIGLPAPVDAQGRGLDSAVILPHWSGLDVRELAAHV 217 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 LG V+V+ND A++E + RD + V +G+G+ V+ +YRG+ +G+I Sbjct: 218 LGCPVVVENDANAGAVSEHALGAGRGARDMAYLKVSHGVGAGLVLGGTLYRGATGAAGEI 277 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH ++ +C CG GCLET S +A+ + R QPV + + ++ A Sbjct: 278 GHITLDERAGLCRCGNRGCLETFVSSAAVLELVR--PSGQPVE--------SVSDVVDAA 327 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 +G+P + V + IG+ + N+LN + L G GE L + Sbjct: 328 LAGDPGCSRVVSDTGRVIGVVVAQLCNLLNPELVVLGGDLARAGELLLEPLR-----TAV 382 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVE 391 DR ++ +L + G L E Sbjct: 383 DRYTLHGSSPVRVVPSELGPRAHLTGALLLARE 415 >UniRef50_A6WEF3 ROK family protein n=2 Tax=Actinomycetales RepID=A6WEF3_KINRD Length = 390 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 79/395 (20%), Positives = 147/395 (37%), Gaps = 35/395 (8%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 RA + Q R HN+ V+L LL+ + +++ LAR ++ VS I+ +L ++ V + Sbjct: 26 RAKVLPSQARAHNRSVVLGLLFHEGPVSRADLARATGLTRVTVSEIVGDLLTDGLVAELG 85 Query: 62 DESQTR-GHSSGTWLIAPEGDWTLCLNVTPT-SIECQVANACLSPKGEFEYLQIDAPTPQ 119 + R G + + + +++ + V + + E + + Sbjct: 86 LRPEGRVGKPAMMVGLRAAEHHVVAVDLQRLPAARVAVLDLSGTVVSET-TADVTGLRGE 144 Query: 120 ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + +E P + + + G VD TG + W + V + L Sbjct: 145 DATAALEDLCRAGIAGAPQRVVGVGIGTPGIVD-ATGRVVESARLGWRS-VPLAERLSHA 202 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 LG+ V V ND ALAE + F V+ V G+G+ V++ + RG +G+IG Sbjct: 203 LGVGVHVANDADTAALAEFTYGEASPSGFMVVAVGQGVGAGLVLDGHLVRGHRLAAGEIG 262 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 H V+P G C+CGR GCLET+ + + L + ++ Sbjct: 263 HLTVDPRGEPCECGRRGCLETIVAPAYLDRTLAGRTPARR-------------------- 302 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 S + + + +G L + L++ ++ L G + L Sbjct: 303 ------RSALRDAGHRLGAVLAPVVAALDLEEVILTGPAELLDGPLLEAARETVQTTCLP 356 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + Q+ QL + G L + + Sbjct: 357 TEGTAP----QVRMAQLGANGVLQGAAALVLSGEF 387 >UniRef50_UPI0001B57B53 transcriptional regulator n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B57B53 Length = 381 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 89/383 (23%), Positives = 139/383 (36%), Gaps = 19/383 (4%) Query: 17 VILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLI 76 +L L+ ++ LAR + VS Q L S + + G + Sbjct: 8 RLLWLVAHGHATSRMDLARALGLPQSTVSVRTQALMSAGVLSESGEGRSAGGRRPKLLTV 67 Query: 77 APEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLW 136 E +V + + E + P+ L++ + Sbjct: 68 NAEFGHVWAADVGSRHVRIGALDIAGRLLEVHERPLDISQEPRELVAGLAAAVRDVMAGA 127 Query: 137 --PDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLA 194 P + L +A G VD G + P V+ L E + V+VDND MLA Sbjct: 128 DCPGRALGLGVAFPGPVDVDAGTITLPSRMPGWRGFAVRAALAEHFELPVVVDNDANMLA 187 Query: 195 LAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV-NPDGVVCDCG 253 L E R V+ GIGS V+ ++YRG +G I H V + C CG Sbjct: 188 LGESVAGAP-GRTLLVVKAGTGIGSGIVLGGELYRGRAGVAGDISHVRVPAAEDQPCTCG 246 Query: 254 RYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSA 313 GCLE VAS +AL Q + TTAQ++A + G P T+ V R+ Sbjct: 247 NRGCLEVVASGAALVGQLQAQGLKLE----------TTAQVMATAEDGHPEATTAVRRAG 296 Query: 314 NAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGF 373 +G L +N N +++ L G G +R ++R + + +I Sbjct: 297 LRLGEVLATVVNFSNPDEVLLGGALS--GSEAFVAAVRGAL---YERCLPLATRELRIDR 351 Query: 374 GQLSRAQQVLGIGYLYVEAQLRQ 396 + + G G L ++A Q Sbjct: 352 VRFGADAGLYGAGALALDAVFEQ 374 >UniRef50_UPI000178996E ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178996E Length = 317 Score = 252 bits (643), Expect = 2e-65, Method: Composition-based stats. Identities = 67/318 (21%), Positives = 127/318 (39%), Gaps = 12/318 (3%) Query: 77 APEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLW 136 + ++ + +++ T I + ++ + A T + +++ I Sbjct: 6 NKQQEFVVGVDLGGTKIAAALFDSEGQLLNREQMETAGARTAEEVVARITNMIRSVSGGH 65 Query: 137 PDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALA 196 P + +A G V+ G+ P T V +K +E L V V ND A Sbjct: 66 P--LRGVGMASPGTVNSREGIVIHGTNLPEWTNVPLKAWMERDLNTEVQVLNDANAAAWG 123 Query: 197 EKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRY 255 E + + + + + GIGS V++ +++ GS +G++GH I++P G C+CG + Sbjct: 124 EYVRGAGRGSTNMVYVTLSTGIGSGIVLDGKLFLGSNSFAGELGHHIIDPSGPQCNCGSH 183 Query: 256 GCLETVASLSALKKQARVWLKSQP---VSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRS 312 GC E AS +A+ A + +Q + + A + +P +DR+ Sbjct: 184 GCWEVFASGTAIGLAASQRMLTQTSVISELAAADGGVNARHVFEAKRLHDPVAVEVIDRA 243 Query: 313 ANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKAT-QI 371 + L L N ++ N ++I + G GE + T D+ PS T +I Sbjct: 244 VYYMALGLVNVIHSFNPDRIVVGGGVSRAGELLFPQLREMT-----DKLVMPSYLGTYEI 298 Query: 372 GFGQLSRAQQVLGIGYLY 389 L ++G L+ Sbjct: 299 VPAGLRDDVGLVGAAALF 316 >UniRef50_C5RVI1 Glucokinase, ROK family n=11 Tax=Thermoanaerobacterales RepID=C5RVI1_9THEO Length = 315 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 65/313 (20%), Positives = 130/313 (41%), Gaps = 11/313 (3%) Query: 85 CLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCW---HRHRKLWPDHTI 141 +++ T I + + + + + P+ ++ IE+ + L Sbjct: 7 GVDLGGTKISTGLVDEKGNIIRSTKIPTMAEKGPEEVIKRIEQSVYDVLKEAGLKLSDLK 66 Query: 142 NLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQN 201 + + G +D GV + P P V + +L KLG++V ++ND A+ E Sbjct: 67 GVGIGSPGPLDAKRGVVISPPNLPGWDNVPIVDILSHKLGVKVKLENDANAAAIGEHLFG 126 Query: 202 NSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLET 260 + +F I V GIG +I ++Y G + +IGH +N +G C+CG YGC E Sbjct: 127 AGKGIDNFVYITVSTGIGGGVIIEGKLYSGENSNAAEIGHHTINFNGPRCNCGNYGCFEA 186 Query: 261 VASLSALKKQARVWLKSQPVSTQLDPEK---LTTAQLIAAWQSGEPWITSWVDRSANAIG 317 AS +A+ + A+ +++ + D K + + + A + G+ + VD A +G Sbjct: 187 FASGTAIARFAQEGIQNGKDTMIRDLAKDGVVKSEHVFEAAKLGDEFAKELVDNEAFYLG 246 Query: 318 LSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLS 377 + + N + N +I + G + + ++ + P+ + ++ +L Sbjct: 247 VGISNIMAFYNPKKIAIGGGVSTQWDMLYDKMMETIKK----KALKPNAEVCEVVRAELG 302 Query: 378 RAQQVLGIGYLYV 390 VLG L + Sbjct: 303 ENVGVLGAAALLL 315 >UniRef50_C6B4Z7 ROK family protein n=3 Tax=Rhizobium RepID=C6B4Z7_RHILS Length = 419 Score = 251 bits (642), Expect = 3e-65, Method: Composition-based stats. Identities = 83/394 (21%), Positives = 165/394 (41%), Gaps = 13/394 (3%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 ++ + N+ +L+ LY +++ LARLA ++ ++ I+Q + ++ ++ D Sbjct: 33 VSQSALGAINRGRVLQALYDNGPKSRADLARLAGVNRTTITGIVQPMIEDQLLIEGDASP 92 Query: 65 Q--TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 G + P+ + + P +I+ + K + +A + Sbjct: 93 SDVKGGKPARPLYFNPDAPMLGAVLLLPGTIQSCLVALTGEIKAVTKAEFDPHGDTEAFI 152 Query: 123 SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 + + K + +A G +D G T+ AP T + + +L+E+ + Sbjct: 153 AVMTKTLTATLSQAQRAPFGIGVASAGMIDSDKGTILTVNLAPVLTGLPLVAILQERFSL 212 Query: 183 RVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V++D+ L + ++W + ++F + +G +F I+ ++YRG G++GH+ Sbjct: 213 PVVIDHHPRALLVGDRWFGPGRGQQNFAAVYTGEVLGGAFFIDGKVYRGLAGSGGELGHS 272 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 +V DG +C+CG++GC ETVA+L L+K+A P S +T A+L+ G Sbjct: 273 VVQIDGALCNCGKHGCWETVAALPWLRKEAVRMGLPHPRS-------VTCARLVKETDEG 325 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 +DR + + N L++N L+G G I R R Sbjct: 326 SNAAEELLDRYTRNVAFGIVNLQQTLSLNSYVLHGDVAGGGMKAAELIRRHVKQLVVKRP 385 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 G + T G G+ + G L + + L+ Sbjct: 386 -GQEISITVNGIGE--GHTALRGAAGLVLSSHLK 416 >UniRef50_C7QJQ5 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QJQ5_CATAD Length = 390 Score = 250 bits (640), Expect = 5e-65, Method: Composition-based stats. Identities = 84/388 (21%), Positives = 153/388 (39%), Gaps = 20/388 (5%) Query: 12 HHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ--TRGH 69 + +L LL R+ +++ +A + ++S ++ + L +E +V G Sbjct: 11 DMTRTAVLALLARRGPLSRAQIAEMLELSPATITQGTRRLLAEGLLVEEAPRPSAGGGGR 70 Query: 70 SSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL--LSEIEK 127 S + P T+ + V + + + F + D +P A+ L+ + + Sbjct: 71 PSVPLSLVPGSAHTIGIQVAHEHVTGVTSRLDATVVHSFRH-AFDPASPDAVETLTALIR 129 Query: 128 CWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVD 187 + + +A+ G V+P TG + W T + + L E LG+ V VD Sbjct: 130 SEIEEIERRGLPLAGVGVAVPGIVEPETGTLSMSVRLGW-TGLPLAARLREALGVPVFVD 188 Query: 188 NDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPD 246 ND + AE+ + E DF + + GIG V++ YRG+ +G+ GH V PD Sbjct: 189 NDISAVTAAERLYGPGADEADFLLAAIGQGIGLGMVLDGAPYRGAAGAAGEFGHMPVQPD 248 Query: 247 GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWIT 306 G C CG GCLE++ S AL + A + P + L A + G+P Sbjct: 249 GPQCVCGNRGCLESLVSTEALLRTAHE--------AGILPAESDLDDLGTAARHGDPAAV 300 Query: 307 SWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSV 366 + +A +G +L +N+L + + G A + + + P+V Sbjct: 301 QLLHNAATLLGRALAGVVNLLGPRSVIIIGEITAIWDLLDDPL-----HEALLDHLLPAV 355 Query: 367 KATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + T+I + + A L Sbjct: 356 RDTRIEVRPWHDEVIAASAARVVLAAPL 383 >UniRef50_A9WL96 Transcriptional regulator/sugar kinase n=13 Tax=Actinobacteria (class) RepID=A9WL96_RENSM Length = 416 Score = 250 bits (640), Expect = 5e-65, Method: Composition-based stats. Identities = 69/382 (18%), Positives = 142/382 (37%), Gaps = 18/382 (4%) Query: 18 ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIA 77 + ++ + ++ LA L ++ V+ L L + + + + G Sbjct: 38 LFQIFRDGQARTRAELAELTGLARSTVAARLDALTALGLIGPAGEAVSSGGRPPSRVAFN 97 Query: 78 PEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHR---HRK 134 P ++V T + + + GE + + P+ +L + + Sbjct: 98 PTARIVFAVDVGATHLLVALTDLGGRLLGERKVAADVSDGPEKVLDLVIRQCQELLAESG 157 Query: 135 LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLA 194 + + + G V+ +G + P P ++ ++ V+VDND ++A Sbjct: 158 RSAKELAGIGIGVPGPVEHSSGKPASPPIMPGWDRFDIPSYIQRVFDTDVLVDNDVNIMA 217 Query: 195 LAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNP-DGVVCDCG 253 L E+ + + +D I V GIGS + + RG+ +G +GH V +G++C CG Sbjct: 218 LGERAAHWREAQDLLFIKVATGIGSGIISGGLLQRGADGTAGDLGHVRVARGEGIICRCG 277 Query: 254 RYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSA 313 GCLE +AS A+ + T+ +++A ++G ++ Sbjct: 278 NEGCLEAIASGPAIARAL----------TESGVPANNGEEILALVRAGNVQAIQVFRQAG 327 Query: 314 NAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGF 373 +G L +++LN + + G A GE+ L + + R + I Sbjct: 328 RDVGDVLATCVSMLNPAVVVIGGSLSAAGEHLLAGVRE----VVYARSLPLATSRLSIVQ 383 Query: 374 GQLSRAQQVLGIGYLYVEAQLR 395 + VLG + + L Sbjct: 384 SKAGAEAGVLGASRMVTDHVLS 405 >UniRef50_B0PDL5 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PDL5_9FIRM Length = 380 Score = 250 bits (640), Expect = 6e-65, Method: Composition-based stats. Identities = 79/388 (20%), Positives = 161/388 (41%), Gaps = 21/388 (5%) Query: 16 CVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWL 75 +IL+++ + ++S +AR+ +S + + I+ LE V ++ S G + Sbjct: 2 KMILDIIRDSREVSRSEIARMTGMSPTSATRIVGSLEECGLVRDMAAVSNGVGRKAVMLD 61 Query: 76 IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQI-DAPTPQALLSEIEKCWHR--- 131 + + + L+++ T+++ + N D+ P+ ++ + + R Sbjct: 62 VEENAFYCIGLDISETNLKLCILNFGGQIVARGAAPAPGDSFQPEEVVEIFYRMYQRLAI 121 Query: 132 HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCV 191 K+ + + G VD TG W+ V + ++E + G+ VDND Sbjct: 122 QAKIPMEKVAAIGAGAVGTVDSKTGEVIFGDLIRWSH-VPIGQMIEARFGLPTYVDNDVK 180 Query: 192 MLALAE-KWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNP-DGVV 249 + + D +++ G+G + + ++ RGS+ +G+IGHTIV+ DG + Sbjct: 181 CAIIGDCSTPPIKGADDVVLLSFGCGVGGAVIHRGRLVRGSINSAGEIGHTIVDYTDGRL 240 Query: 250 CDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWV 309 C CGR GC + + +QA KS P + L +++AAW+ EPW + + Sbjct: 241 CSCGRRGCAAAYLTKDQIIQQA---AKSCPGISSL-------EEIMAAWERREPWAEALL 290 Query: 310 DRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKAT 369 DR + + +++ N LN + L G+ + ++ + P AT Sbjct: 291 DRISTYMAITVSNAACFLNPRNMILGGKLMNESPFLFDLVLEKYS----AMMYPPLRGAT 346 Query: 370 QIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 L +G + VE + ++ Sbjct: 347 TFIRSPLGTDATCVGGAMIAVEKHVYKV 374 >UniRef50_D1W4V6 ROK family protein n=2 Tax=Prevotella RepID=D1W4V6_9BACT Length = 400 Score = 250 bits (639), Expect = 6e-65, Method: Composition-based stats. Identities = 76/410 (18%), Positives = 166/410 (40%), Gaps = 24/410 (5%) Query: 1 MRACINNQQI--RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVV 58 M+ + + + + N IL+ L +++ IS+P + I+ L S+ VV Sbjct: 1 MKTILKLEYLHRKPDNYKTILKYLMLHDGCTIPEISKHIGISVPTTTKIITNLMSKGFVV 60 Query: 59 NIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP 118 + QT G + ++ + + L ++ + S+ + + + E + Sbjct: 61 SKGKRDQTHGRLPTVYGLSTDSGYFLGIDPSYDSLAMALCDFSGNIVFEKNKIPFQLENT 120 Query: 119 QALLSEIEKCWHRHRK---LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 Q L + + + + + ++ ++ + G+V+P TGVS ++ + Sbjct: 121 QQCLDTLLDLVNEYIGSLDIQKESILHASMNVSGRVNPFTGVSYSIFDF---LNQPLAKY 177 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYG 234 + +++GI ++ND + E + ++ +N +GI ++ +IY G Sbjct: 178 ISDQIGIPTCIENDTRAMTFGEYLVGCCKSAKNVLFVNASWGIAIGIIVGGKIYYGKSGF 237 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDP-----EKL 289 SG+ GH + V+C CG+ GCLET S AL ++ + S D ++L Sbjct: 238 SGEFGHVKAYDNEVLCRCGKKGCLETEVSGMALLRETVKNVLKGKRSILSDKVLKENKEL 297 Query: 290 TTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 T + ++ A Q + + + A+ +G +L +NI N + + + G G+ + Sbjct: 298 TLSDVLYAIQKEDTLCIETLQKIADQLGRNLAGMINIFNPDMLIIGGDLSQTGDYITQPV 357 Query: 350 ---IRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 I++ N + D +++ L V+G + +R Sbjct: 358 QMAIKKYSLNIVNED-------SEVVTSTLRERAGVVGACMVARYQVVRD 400 >UniRef50_D2PPN2 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PPN2_9ACTO Length = 402 Score = 250 bits (639), Expect = 7e-65, Method: Composition-based stats. Identities = 82/378 (21%), Positives = 140/378 (37%), Gaps = 22/378 (5%) Query: 18 ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIA 77 I+ LL Q ++ +AR +S V+ + ++L + + ++ G + + Sbjct: 18 IVGLLGTQGPTARTAIARTLGLSPATVTQVTKDLIARGLIEELESVPSNGGRPARLLGLV 77 Query: 78 PEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWP 137 + L VT + + + + P L + + + Sbjct: 78 QDAGVALGAKVTADHVAIVTVELDGTVRSSVSH--DYDPGADDALPRLGRILAQEVAALD 135 Query: 138 DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAE 197 D + + + + G VD P W V L +G V+VDND LA AE Sbjct: 136 DRLLGVGVGVPGSVDSQASGIVDAPTLSWQAA-PVGPSLRAAIGSPVLVDNDVNTLAAAE 194 Query: 198 KWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV---NPDGVVCDCG 253 + + + V+ + GIG V++ IYRG+ G+G+IGH V D + C CG Sbjct: 195 RLYGIGRAHSSYLVVTIGRGIGCGIVVDGGIYRGANGGAGEIGHIPVWHDEQDQLPCTCG 254 Query: 254 RYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSA 313 GCLE + L + AR P T L+ A +G+ + Sbjct: 255 STGCLEAHVGAAGLCRTARDRGVIGPRG--------TLPTLLRAAATGDEAARQVFAAAG 306 Query: 314 NAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNP-FDRDEGPSVKATQIG 372 +G +L ++ ++ + L G + W QTGF P F R P+ KA + Sbjct: 307 AMLGRALAGVIHTIDPEVVVLMGEGVDGWQYW------QTGFEPSFRRSLLPARKAVPVV 360 Query: 373 FGQLSRAQQVLGIGYLYV 390 + Q G L + Sbjct: 361 VEPWTEDQWARGAASLVL 378 >UniRef50_Q11DN8 ROK domain containing protein n=3 Tax=Phyllobacteriaceae RepID=Q11DN8_MESSB Length = 442 Score = 250 bits (638), Expect = 8e-65, Method: Composition-based stats. Identities = 86/405 (21%), Positives = 160/405 (39%), Gaps = 18/405 (4%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 + A I + ++R N+ +++ + + + +++ +A+L +S +S I L +E + + Sbjct: 22 VTAGIRHDEMRKRNRALVIAAVRQSDQPSRTEIAKLTGLSHSTISTISAGLIAEGTMREV 81 Query: 61 ----DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKG-EFEYLQIDA 115 D RG + P+ CL ++ S+ +A+ L A Sbjct: 82 EQDGDTAPTRRGRPQVALSLNPDAASVACLYLSFNSLSVVLADYRGDVINQRTHRLDTLA 141 Query: 116 PTPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 + Q LL + + ++ A+ G D P P + + V Sbjct: 142 MSRQDLLEATIAALQDLTR-DRGEFLRISCAVQGITDSAGRELLWSPITPLSH-LPVGAA 199 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYG 234 LE+ G+ V ND M+A A +W N + D F I + +GIG ++N +++ G+ Sbjct: 200 LEDAFGVPTTVQNDSNMMAEALRWLNPKRYSDNFIAILLSHGIGMGLMLNGKMFSGTRSS 259 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQL 294 +G+ GH I P G +C CGR GC+E A A+ ++A +S D E +L Sbjct: 260 AGEFGHMIHKPGGALCRCGRMGCIEAYAGNYAIWRRAS--GRSPEERPVADIEAGEMEKL 317 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTG 354 + E + AIG L N +++ + + G+ A + L IR Sbjct: 318 AQRARCEEGPARQAFREAGRAIGFGLGNLFALIDPAPVAIIGQGTAAFD-ILEPEIRSAL 376 Query: 355 FNPFDRDEGPSVKATQIGFGQLSRAQQVL--GIGYLYVEAQLRQI 397 + I F + RA+ ++ G + R + Sbjct: 377 AETAGGQHAEA-----ISFETMPRARPLILHGAAMTALTDLDRHV 416 >UniRef50_O82844 Xylose repressor n=2 Tax=Enterococcaceae RepID=O82844_TETHA Length = 386 Score = 250 bits (638), Expect = 8e-65, Method: Composition-based stats. Identities = 69/383 (18%), Positives = 146/383 (38%), Gaps = 26/383 (6%) Query: 17 VILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVN--IDDESQTRGHSSGTW 74 +IL+ + + +++ L ++ ++ +VS+I + L + + + + + + G Sbjct: 13 LILKNIIDYQEISRAKLTKITNLTKSSVSDITKTLLDKDIIYESKVGNSTNSGGRRPIYL 72 Query: 75 LIAPEGDWTLCLNVTPTSIECQV--ANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRH 132 + + + I+ + N L + + + I+ LS+I + Sbjct: 73 KFNENSALVIGIEIGRNYIKGGLSYINGSLIREKSYTQITINRYNIIDTLSQIIQQLCSD 132 Query: 133 RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVM 192 I + +AIHG + +P + +E++ L + V + N+ Sbjct: 133 LPKSSYGIIGVGVAIHGSI--YKNKITFVPYSD-MDEIELQEKLSSHTHLPVFLINEANA 189 Query: 193 LALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDC 252 AL E S I++ GIG+ + +Y G +G+IGHT + PDG +C C Sbjct: 190 SALGEYTF-TSNSESLISISIQDGIGAGIIEKGILYSGKNGNAGEIGHTTLYPDGRLCPC 248 Query: 253 GRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRS 312 G +GCLE AS + L K+ +S + E Q+I W + + + + Sbjct: 249 GNHGCLEQYASTTILYKE---------ISKLKEVEYCDLHQVINYWH-NDEEVIQLLKNN 298 Query: 313 ANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIG 372 A I + + N +++ + + + + +N I + + + I Sbjct: 299 AKLISIGVNNIVSMYDPETVVINNELYREIPDLINVIEKHLTRR--------NNRNVFIK 350 Query: 373 FGQLSRAQQVLGIGYLYVEAQLR 395 L + G L + L+ Sbjct: 351 NTSLEDKTTLYGCLSLVIRQFLK 373 >UniRef50_D1BAZ9 Transcriptional regulator/sugar kinase n=2 Tax=Micrococcineae RepID=D1BAZ9_SANKS Length = 420 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 80/398 (20%), Positives = 147/398 (36%), Gaps = 23/398 (5%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M + +R N+ +I++ + + + L +S +S I++EL V Sbjct: 1 MAISGSQSSLREANRALIVDTIKKFGGLTQVELVAATGLSPATISTIVKELLGGGIV--- 57 Query: 61 DDESQTR-GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFE---YLQIDAP 116 D +S TR G + +A + ++ + + + E + + Sbjct: 58 DTQSTTRSGRRAQMVTLARRVGLVAGVQFGHRHLKVALGDFGRTVVAEQTMPLPVDHRSD 117 Query: 117 TPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 T + + D + + L + VD TG ++ +L Sbjct: 118 TGLDRAALLVVELLERVGAPIDELLTIGLTVPAPVDVSTGEISVHGIMRGWDGQQLGQVL 177 Query: 177 EEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 E+L V+VDND ALAE + +D + + Y G+ ++ ++RG + Sbjct: 178 SERLARPVVVDNDANAAALAEHELGAGRGYQDVVFVRMSYSTGAGIMLGGHLHRGFAGTA 237 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLI 295 G+IGH V+P G +C CG GCL+TV S +AL R LT L+ Sbjct: 238 GEIGHVQVDPRGDICRCGNRGCLDTVVSSTALLDLLRGSHG-----------DLTLRDLV 286 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF 355 + +G+ + + IG + LN + + G A GE + + + Sbjct: 287 SRALAGDLGCRRVLADAGERIGGVVATLAGTLNPQLVVVGGELAAAGEVIVEPLRQAVLR 346 Query: 356 NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 + P ++ G+L +V G L + A Sbjct: 347 HVAPNTVAP----LEVVPGELGEQAEVTGALLLALRAT 380 >UniRef50_D2BD51 Transcriptional repressor of the xylose operon n=2 Tax=Streptosporangineae RepID=D2BD51_STRRD Length = 401 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 69/363 (19%), Positives = 136/363 (37%), Gaps = 19/363 (5%) Query: 9 QIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRG 68 +R N V+L + +++ +A ++ VS+++ +L + V G Sbjct: 15 DVRATNLAVVLRFVREHAPCSRADIAASTGLNKATVSSLVADLIDRRLVRETGLTENRVG 74 Query: 69 HSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSP----KGEFEYLQIDAPTPQALLSE 124 + ++ + + V + + + F I A A ++ Sbjct: 75 RPATMLVLDGSPYAAIGVEVNVDYVTAVAVDLSGERLLSWRRSFSGATITAAQAVATVAA 134 Query: 125 IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL---G 181 I + + LA+ + G V G + P W ++ L + L G Sbjct: 135 IVRRVVNRMAKEERQVLGLAVGVPGLV-GTDGTVRIAPNLGWRDA-DLCGDLTKALRDPG 192 Query: 182 IRVMVDNDCVMLALAEKWQNN-SQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 V VDND + ALAE + + + + G+G+ V++ ++ RG G+IGH Sbjct: 193 FPVQVDNDANLAALAEHRFGPRAGTANLVYLTGEIGVGAGVVLDGRLRRGGQGYGGEIGH 252 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 ++P G C CGR GCLE VA + A+ + A + ++ +++ ++ Sbjct: 253 IQLDPLGAECRCGRLGCLEAVAGIGAVLEHAALSPAEV---------EIELDEVVRLARA 303 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 +P I + + + +G + N+LN + L G L + + Sbjct: 304 ADPRILAVLATVGHNLGKGVAVIANLLNPEVVILGGYYVPLAPWLLPAVEAELRGRTIAP 363 Query: 361 DEG 363 D G Sbjct: 364 DAG 366 >UniRef50_A4XCV6 ROK family protein n=2 Tax=Salinispora RepID=A4XCV6_SALTO Length = 381 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 78/373 (20%), Positives = 141/373 (37%), Gaps = 18/373 (4%) Query: 19 LELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIAP 78 L+LL R +++ L Q++ V+ +++ L E + T G + Sbjct: 14 LDLLSRGAATSRADLVEALQVAPSTVTAMVRRLLEEGVLAEEGMGRSTGGRPPRILRLRE 73 Query: 79 EGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLW-P 137 + + + E A P+ + + + + R P Sbjct: 74 TKGVLAVAELGGRHARVGLCTPGGGLRTTEEVAIDIAAGPEEVFAVVGATFTRLLAATTP 133 Query: 138 DHTI-NLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALA 196 D + + LA+ G V G + P + V+ L + + V+V+ND A+ Sbjct: 134 DQVLLGVGLALPGPVGFPEGRLVGPARMPGWSGVDAGAHLTDHFQVPVIVENDAKAAAMG 193 Query: 197 EKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVV-CDCGRY 255 E + D + GIG+ V QI+RG SG + H V G C CG Sbjct: 194 EYVTRRQETGDMIYVKAGTGIGACLVTGGQIHRGGRGLSGDVTHVRVADSGERHCSCGSQ 253 Query: 256 GCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANA 315 GCLETVAS +AL +Q S +T ++I A +P + + V + Sbjct: 254 GCLETVASGAALARQLAEQGSS----------AVTVPEIITAVGDADPTVVTMVRHAGGL 303 Query: 316 IGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQ 375 +G++L +N LN + + + G + L+ + T ++R ++ I Sbjct: 304 LGVALSGLVNFLNPDTVVIGGALSS-----LDVYVAATRSMLYERCLPSMTQSLTIEASG 358 Query: 376 LSRAQQVLGIGYL 388 ++G+G+L Sbjct: 359 AGSNAALIGLGHL 371 >UniRef50_C4RIZ1 ROK-family transcriptional regulator n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RIZ1_9ACTO Length = 449 Score = 249 bits (636), Expect = 1e-64, Method: Composition-based stats. Identities = 82/397 (20%), Positives = 155/397 (39%), Gaps = 20/397 (5%) Query: 11 RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHS 70 R + ++L+++ + ++ LA ++ +S +++EL + VV + T G Sbjct: 33 RPKTRGLVLDVIRSARSISRVELAAATGLTGATISEVVRELMGDGLVVESGRGAPTGGKP 92 Query: 71 SGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIE---K 127 + P +++ + + + V + + + + P+ L + Sbjct: 93 RTMVQLNPLARYSVGVQLERNTCVIVVVDLAGRQVARTSFQGVASMPPERALPLVATQVD 152 Query: 128 CWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVD 187 + D + + L +G D GV T V L E LG+ V++D Sbjct: 153 ALLATAAVDRDRVLGVGLVSYGPQDRHAGVLLTPQPTDEWLDHPVVRRLAESLGLPVLLD 212 Query: 188 NDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPD 246 ND A+ E W + R + I + GIG V+ ++YRGS S +IGH ++ + Sbjct: 213 NDAAAAAIGEYWMGSVDPRSTYGCIYMATGIGGGVVVAGEVYRGSSSNSVEIGHISIDIN 272 Query: 247 GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW-------Q 299 G C CG GCLE A SAL +QA + P + T A ++ + Sbjct: 273 GDECPCGNVGCLENYAGPSALVRQA----LATPGLARRLALDPTAADVLTEFARIAAAAN 328 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGR-SCAFGENWLNTIIRQTGFNPF 358 +G+ V++SA +G + + +++ I L G G + I ++ F Sbjct: 329 AGDTDARGLVEQSARYLGCAAVTMACLFDLDAIVLAGPSFAVAGSIYQAMIQQEVDRRMF 388 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 R P +I +G L ++++L Sbjct: 389 ARRAHP----VRIVPSVNGSDAAAIGGAVLVLQSELT 421 >UniRef50_Q1Q3C7 Similar to glucokinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q3C7_9BACT Length = 322 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 64/316 (20%), Positives = 138/316 (43%), Gaps = 8/316 (2%) Query: 81 DWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWH---RHRKLWP 137 + + +++ T+++ + + +F Q + +I + ++ ++ Sbjct: 6 KYIIGVDLGGTNLKAGIVGRDGNILYQFSIKTNAHAESQVISHQICELIAGIIKNVRIEK 65 Query: 138 DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAE 197 + + L G +D P + +K ++ + G+ +++ND A E Sbjct: 66 SDILGIGLGSPGLIDKKGETILFSPNLSKWRDIPIKKIISDTFGLPCILENDANAAAWGE 125 Query: 198 KWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYG 256 KW ++ ++ + GIG +++ +++RG +G+IGH + DG +C+CG YG Sbjct: 126 KWVGAGKDVSSLVMLTLGTGIGGGIILDNKLWRGINNTAGEIGHMSIQTDGPLCNCGNYG 185 Query: 257 CLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAI 316 C+E AS + ++ R L+S S E++T ++ A G+ S ++ + + Sbjct: 186 CIEVYASAPGMVRRFRELLESGKASLLKKDEEITAKRINEAAVQGDGASLSIIEETGRYL 245 Query: 317 GLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQL 376 G+++ N ++ILN + L G GE + + R +R S K T+I F QL Sbjct: 246 GIAIVNIIHILNPGAVVLSGGLIGSGELLMRPVKRTIE----ERVLKASYKDTKILFSQL 301 Query: 377 SRAQQVLGIGYLYVEA 392 ++G ++ Sbjct: 302 GTDAGIIGAAGCLLKE 317 >UniRef50_C7IE75 ROK family protein n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IE75_9CLOT Length = 412 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 72/350 (20%), Positives = 148/350 (42%), Gaps = 14/350 (4%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 IN ++ N+ IL L+YR ++ +A ++ A++ I +L +E +V E Sbjct: 10 GINMLGVKIKNRSSILYLIYRSGGISRKEIANKLNLTPAAITLITTDLINEGILVESAVE 69 Query: 64 SQT--RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQID-----AP 116 +G I + T+ + ++ + + E D + Sbjct: 70 QNNNRKGRKEILLDINRKKYATIGIYISTNKFQILCMDLNNIVIFEDTVFTADCHKKSSA 129 Query: 117 TPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 + + +E + + + + +++ G V+ GVS W V V + Sbjct: 130 ILDKVCTILEHNLIYYDIVRTRTILGVGVSVKGIVNSRAGVSINSYNV-WEDNVNVVEYI 188 Query: 177 EEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 ++++ + ++ N+ LA E + N + +D I G+G++ V + + + Sbjct: 189 QKRMKVPAILTNNICSLAHGESFFANMEHPKDMLFIKYGPGVGAARVFYQDTLSVYDFNA 248 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPV-----STQLDPEKLT 290 Q+GHTI +P+G +C+CG GCLET+A A+++ A L ++ T + E + Sbjct: 249 IQLGHTIADPNGAICECGNRGCLETIAGYDAIERNAANILSNKLTPYLFSYTDGNTENIN 308 Query: 291 TAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCA 340 +I A+ G+ I +DRS + +++ N + + + I LYG Sbjct: 309 IKNIIKAYYDGDKLIEDILDRSIYFLSIAIKNAMCLFDPKSIILYGELFE 358 >UniRef50_B8E378 ROK family protein n=1 Tax=Dictyoglomus turgidum DSM 6724 RepID=B8E378_DICTD Length = 376 Score = 248 bits (635), Expect = 2e-64, Method: Composition-based stats. Identities = 84/402 (20%), Positives = 160/402 (39%), Gaps = 33/402 (8%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 MR + I +NK ++LE+L + +++ LAR+++++ A+S I+ EL + ++ + Sbjct: 1 MREGRKPEYIGLYNKNLVLEILIKIGPKSRAELARISKLTKTAISEIVDELIEKNILIEV 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 +RG I PE L ++++ V NA + E Y I+ + Sbjct: 61 GKVETSRGRRPTKLTINPELK-VLAIDLSGLEGRVGVVNANGKIE-EDRYHPIEK--KED 116 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 L I+ + + ++ + ++L++ G +D G W ++K L+EK Sbjct: 117 LFQLIDPLLIK----YKNNVVAISLSVPGIIDKYNGEVILSVGLNWKN-FKLKEFLKEKY 171 Query: 181 -GIRVMVDNDCVMLALAEKWQNNSQERDFC-VINVDYGIGSSFVINEQIYRGSLYGSGQI 238 + ++ D L+E W + + + + GIG I G G+I Sbjct: 172 PNYPIYMEKDTNSGLLSELWFGEGKNFNILFYLLFEKGIGLGIYYKGNIIEGFNNIEGEI 231 Query: 239 GHTIVNPD-GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 GHTIV+ + G C CG GCLE++AS+ ++++ LD L A + Sbjct: 232 GHTIVSKEIGEKCWCGNKGCLESIASIPKIQEKI------------LDLGSLEKALINYI 279 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG--RSCAFGENWLNTIIRQTGF 355 + + + +G+SL N ++IL I + G N I++ Sbjct: 280 QDNKNSVLQEIFE----FLGISLANTIHILAPEAICISGNRGMTKDILNLFTKILKDKVD 335 Query: 356 NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 + L ++G G L R++ Sbjct: 336 KYVFEYLKDKIY---FYTSPLGNDGLLIGAGILGFINYFREL 374 >UniRef50_C0W4H3 ROK family protein n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W4H3_9ACTO Length = 412 Score = 248 bits (634), Expect = 3e-64, Method: Composition-based stats. Identities = 76/397 (19%), Positives = 142/397 (35%), Gaps = 24/397 (6%) Query: 12 HHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD-ESQTRGHS 70 N+ ++L+ + +R ++ + R +S VSN+++ L V+ + RG Sbjct: 13 EVNRSLVLDTIRYAERLTRADIGRQTHLSPQTVSNVVRYLLKHDLVLEAGTVAPEGRGRP 72 Query: 71 SGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWH 130 T + P G + + ++V P+++ + E P L+EI Sbjct: 73 GTTVQLNPHGRFAIGVHVDPSALGVVAVDLRGDLLYEHYEPLPFPNDPTQSLTEIAAQTE 132 Query: 131 RH---RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVD 187 R + + + +A G + G P P ++ L + ++D Sbjct: 133 RAIARTGQPRERMLGIGIATPGPI--EDGRMTRPPLLPHWQDFPLRSRLAQLTHTATLLD 190 Query: 188 NDCVMLALAEKWQN----NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV 243 D A A W++ + F + + G + V++ Q++RG +G+ GH Sbjct: 191 KDVNAAAQAHLWRHPTALGAHPNSFMFLYIGAGSALTAVLDGQVWRGRSGNAGEAGHFSG 250 Query: 244 NPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQP--VSTQLDPEKLTT-AQLIAAWQS 300 N G++C CG+ GCL + +QAR P ST EK T A+L+ Sbjct: 251 NSTGLLCPCGQRGCLGISLGEKEMIEQARDLGLDLPGSTSTATPGEKSTIFARLLRLADD 310 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGR----SCAFGENWLNTIIRQTGFN 356 G+P + +A+ I +L ++ + + G E L+ + Q F Sbjct: 311 GDPIAQEVLSGAASVIVRVTTVLSELLELDTLIIGGPRWPVMQKQMEPLLDQPLSQRIFY 370 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 R L G L + Sbjct: 371 GETRPIQTIS-------SPLGARDAATGAACLVLSET 400 >UniRef50_C0CHG9 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CHG9_9FIRM Length = 322 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 66/331 (19%), Positives = 130/331 (39%), Gaps = 31/331 (9%) Query: 80 GDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAP---------TPQALLSEIEKCWH 130 + L +++ T + ++ Y+ + +L I + + Sbjct: 2 SKYYLIMDIGGTKTTGALFTEDGKIVDDYTYVSKSPTFEGKEAVYQNTRGVLDHIVERFQ 61 Query: 131 RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDC 190 K + + + G +D G+ P W + L + V +DND Sbjct: 62 VDLK----DVLGIGVGCPGPLDSRKGIIIHAPLMRWKN-FPLVERLSHDFQLPVALDNDG 116 Query: 191 VMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVV 249 + ALAE+ ++ + + V G G VIN +IY G G+G++GH ++P+G+ Sbjct: 117 NLGALAEQRCGVAKGLDNVMYMTVSTGCGGGLVINGEIYHGKHDGAGEVGHMSIDPEGLD 176 Query: 250 CDCGRYGCLETVASLSALKKQARVWLKSQPVS-----TQLDPEKLTTAQLIAAWQSGEPW 304 C CG GC E AS +A+ ++ R + + S Q DP+K+ L A + G+ + Sbjct: 177 CPCGGKGCFELYASGTAMNRRMREDMAAGKKSMVFELAQHDPKKIEGRLLTEAAEKGDTY 236 Query: 305 ITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENW---LNTIIRQTGFNPFDRD 361 ++ + A +G+ + N N+ + + L G + + +IR P + D Sbjct: 237 ALAFFKQQAYYLGVGISNLFNLYDPEVLVLGGGVTKAKAFYHDEMMRVIRSRCLQPVEDD 296 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEA 392 I + ++ + G +L + Sbjct: 297 S--------IRYSVMNDRVVLYGAYHLIKDK 319 >UniRef50_C8SG46 ROK family protein n=1 Tax=Mesorhizobium opportunistum WSM2075 RepID=C8SG46_9RHIZ Length = 401 Score = 248 bits (633), Expect = 3e-64, Method: Composition-based stats. Identities = 77/392 (19%), Positives = 151/392 (38%), Gaps = 21/392 (5%) Query: 15 KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES---QTRGHSS 71 + +I+ L + + S + + ++ VS L L V+ ++ G + Sbjct: 19 ESMIVRCLSERGVLSASQITHVTGLARSTVSTALNGLRKSGMVIEAPTSRDGIRSIGRPA 78 Query: 72 GTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWH- 130 + P + +++ + VA+ S E PQ + Sbjct: 79 AALTLNPTAGTCVGIHLGLQEMRLIVADVSHSVIAEQTIPMALDYQPQQAAQMAKSAIAQ 138 Query: 131 --RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDN 188 L + + +++ G V GV P V ++ + L + DN Sbjct: 139 SYEENGLPAAGLLGVGVSVSGPV-SRDGVVLRASIVPTWAGVNIRDVFGPVLERPIFADN 197 Query: 189 DCVMLALAE-KWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDG 247 + A+AE W + DF + +D G+G + V + ++ G G+G+ GH ++P G Sbjct: 198 ESNCSAIAELMWGAAIGQDDFVLFKIDLGVGGAIVQHGRLVTGIAGGAGEFGHISIDPGG 257 Query: 248 VVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITS 307 +C CG GCLE AS + +Q ++ Q +T +I + G+ Sbjct: 258 DLCRCGNRGCLELYASFARPLEQISRIVRRQ----------VTMDDVITMAEQGDIRALR 307 Query: 308 WVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF--DRDEGPS 365 ++ +A G L ++LN I + G G+ L +I + RD P+ Sbjct: 308 MIEDTAEIAGRGLGLIGSVLNPPLIIIGGHMALAGDILLTPLIASYERHTLIKSRDIAPA 367 Query: 366 VKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 ++ T+I G+ ++ +LG L + Q +++ Sbjct: 368 LR-TRITVGKHTQNDALLGAVGLVLRHQTKEL 398 >UniRef50_A3I7X3 Putative uncharacterized protein n=1 Tax=Bacillus sp. B14905 RepID=A3I7X3_9BACI Length = 383 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 68/396 (17%), Positives = 150/396 (37%), Gaps = 21/396 (5%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 + Q+R NK ++L+ + + ++ L++ ++S ++ I+QELE+E ++ E Sbjct: 5 DQVQMRRQNKYIVLDAIRQMAPISRIQLSKYTKMSPTTITRIVQELEAEGFILEGVSEET 64 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFE---YLQIDAPTPQALL 122 G + + +T+ + + +I + + E ++ LL Sbjct: 65 AIGRRPTLIHMREDALYTIGIEIDCFTIRLGILDFLGKLIAFQEIKCSIKHRYEEAIHLL 124 Query: 123 SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 ++ + + + + + G ++ G+ + Q W + L Sbjct: 125 KNSIATIMSEYQIAQEKLLGIGIGVPGVINNEEGIIVSSEQLKWENC-RIGEDLNGVFDC 183 Query: 183 RVMVDNDCVMLALAEK-WQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V+VDN+ M +AE + ++ + G+G+S ++N ++YRG +G+I H Sbjct: 184 EVIVDNELKMQIIAEIGDIYTPLYSNCILVGMGTGVGASILLNGEVYRGIQNKAGEISHI 243 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 +NP G +C CG+ GCL S L + L Q + +++ G Sbjct: 244 TINPFGEMCHCGKRGCLSMYISEMTLLNRTPKNLTIQ-----------SIEEVLQCVDRG 292 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 E W A + +++ N + + + + G ++ + ++ Sbjct: 293 EQWAVDIQQDVATYLAIAINNLVCLYEPEAVIVSGEIIEH-NVTFQKLLSEKCKQYIWKE 351 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 P + F + V G L + QL + Sbjct: 352 LQPHFV---LQFSNQLKEGVVKGAA-LQAQKQLLSV 383 >UniRef50_A4WVU3 ROK family protein n=9 Tax=Rhodobacteraceae RepID=A4WVU3_RHOS5 Length = 425 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 76/330 (23%), Positives = 131/330 (39%), Gaps = 11/330 (3%) Query: 15 KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGH---SS 71 + + E + + +AR +S +V+ I+ EL V + Sbjct: 32 RQQVFERVRAAGLTARVQVARDLGVSPASVTTIVSELIEAGLVEEVATRRGGESGRGRPV 91 Query: 72 GTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEF-EYLQIDAPTPQALLSEIEKCWH 130 + + L ++ + V + E E + A P +LL+ +E Sbjct: 92 VALGVRGAAHRVVGLKISDRDLSAVVMDFAGRLLAEHHEERRPVALAPASLLAVLETLLD 151 Query: 131 RH---RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVD 187 R L + + + G VD G V + L E+LG+ V VD Sbjct: 152 RVTAKAGLARQELAAVGIGLPGYVDSTGGRVLWSSILAERD-VPLGRLATERLGLPVQVD 210 Query: 188 NDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPD 246 ND + A+AE W + DF V+ +++G+G V N +I+RG+ ++GHT V D Sbjct: 211 NDANLCAMAELWFGAGRRLSDFVVVTIEHGLGMGMVTNHRIFRGARGIGMELGHTKVQLD 270 Query: 247 GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWIT 306 G +C CG+ GCLE + AL ++A L +Q + L ++G Sbjct: 271 GALCRCGQRGCLEAYVADYALAREATTALNWTHRESQ--SMAILLESLHDHAKAGNQAAR 328 Query: 307 SWVDRSANAIGLSLYNFLNILNINQIWLYG 336 S R+ + + L N +N+++ I L G Sbjct: 329 SIFRRAGRYLAVGLANIVNLVDPPLIILAG 358 >UniRef50_C8Q8E8 ROK family protein n=1 Tax=Pantoea sp. At-9b RepID=C8Q8E8_9ENTR Length = 377 Score = 247 bits (632), Expect = 4e-64, Method: Composition-based stats. Identities = 82/372 (22%), Positives = 166/372 (44%), Gaps = 19/372 (5%) Query: 12 HHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSS 71 + ++ I+ LL +++ +A+ ++S A+S +++E+ + V E+ +G S Sbjct: 3 NAHQQQIIRLLIASHGMSRTAIAQKMKLSKAAISTLIKEMLNAGLVEESIPEATGQGRPS 62 Query: 72 GTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKG-EFEYLQIDAPTPQALLSEIEKCWH 130 + + + L ++ +I + + L +D +++ Sbjct: 63 VLLKMRADSAYFLGASLLGEAITLVLIDMHGRTLATRVLPLNLDPHQLTRAIADAIPSLV 122 Query: 131 RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDC 190 + + PD I L + + G VD V W V + +L+ + G+ V ++ND Sbjct: 123 TQQGISPDQLIGLGVTLSGFVDEHQAVCVQSALLGWKD-VPLADMLKAQTGLEVSLENDA 181 Query: 191 VMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVV 249 LA++EK + R+F +I+ GIGS+ Q++RG+ G+G+I H + P G Sbjct: 182 KALAVSEKIFGLAKKVRNFTLISHSDGIGSAHFFQGQLHRGAHGGAGEIAHCTIEPGGRP 241 Query: 250 CDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWV 309 C CG+ GCL+T+ASL+A+++ R + +L+ + + G + + Sbjct: 242 CRCGKRGCLDTLASLTAIREHMRDKAIAAQTLPELETQAI----------KGSSAAIAIL 291 Query: 310 DRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSV-KA 368 ++ NA+GL++ N + + + I + AF + L T++ Q D + PS+ Sbjct: 292 HQAGNALGLAIANIVQMNDPELIVIAHHPGAF-DGLLKTVVMQA----IDANVLPSIMGK 346 Query: 369 TQIGFGQLSRAQ 380 T I L+ Sbjct: 347 TPISTIVLNDES 358 >UniRef50_C0X1R1 Transcriptional regulator n=13 Tax=Enterococcus faecalis RepID=C0X1R1_ENTFA Length = 388 Score = 247 bits (631), Expect = 6e-64, Method: Composition-based stats. Identities = 66/390 (16%), Positives = 154/390 (39%), Gaps = 25/390 (6%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQT-RG 68 IR N+ IL + + + +++ L+++ ++ +VS+I +L ++ ++ T RG Sbjct: 8 IREQNEAQILNQIIKHREISRAELSKITSLNKASVSSITNKLINDGFIIEKRIGEATNRG 67 Query: 69 HSSGTWLIA-PEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQ--IDAPTPQALLSEI 125 + +++ I+ +A+ + + ++ Q L+ ++ Sbjct: 68 RKPIMLTFNGSSSALVIAIDLGYNYIDGALASLDGKEIHRVQLIDTYVNKKNVQDLIHKV 127 Query: 126 EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVM 185 + + +A+ GQV +S + + + +L ++ V Sbjct: 128 FNQLTSDCPHTHYGIVGMTIALQGQVLNNKIISTSYNDL---AEINLVEMLNQEYNFPVF 184 Query: 186 VDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNP 245 + N+ + AL E + S + I++ GIG V N ++ G+ +GQ+GHTI+ P Sbjct: 185 LQNEANLSALGEYTFS-SDIENLASISLHSGIGVGLVKNGKLDVGNKGYAGQLGHTILFP 243 Query: 246 DGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWI 305 +G C CG +GCLE S + + +S + + K+ + + + + E + Sbjct: 244 NGRKCTCGNHGCLEKYCSTQVIYHE---------ISKEKNLNKINSDVVSILYNNKESKV 294 Query: 306 TSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPS 365 +++ A + + + N + + + + +N II++ N F +D Sbjct: 295 VKMIEQYAYYLSIGVNNAIMLYAPELVIFNSPLTKKIPDIIN-IIQRNLNNQFTKDVLVI 353 Query: 366 VKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + + G L ++ L Sbjct: 354 NSPIE-------WNPVISGAISLSIQKFLN 376 >UniRef50_Q1J318 ROK domain protein n=2 Tax=Bacteria RepID=Q1J318_DEIGD Length = 400 Score = 246 bits (629), Expect = 9e-64, Method: Composition-based stats. Identities = 71/377 (18%), Positives = 142/377 (37%), Gaps = 26/377 (6%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + ++ N+ +LEL+ R+ +++ LA Q++ V ++QEL + +V Sbjct: 9 RAGDQGFLKQLNRSAVLELIRREPGISRAELAARTQLTKVTVGAMVQELLDQGWLVEGSL 68 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 + + G + L V + G+ + + + TP+A Sbjct: 69 QQGSLGRPGRALHLNERRHVLLGAEVGVQGLRVVACTLTGRALGQ-RAILVPSTTPEATA 127 Query: 123 SEIEKCWHRHR---KLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTT--PVEVKYLLE 177 + ++ + L +A+ G V P W + V Sbjct: 128 QHLATLIMEVLTYPEVAGREVLGLGVAVPGPVALHDPTLLFAPNLGWRDVPFLTVLKPFL 187 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQERDFC-VINVDYGIGSSFVINE---QIYRGSLY 233 L +++N+ A E + + + + +++ GIGS ++ + RG+ Sbjct: 188 PDLPGPWLLENEAKAAAFGEVYFSGGDKPELLAYLSLGTGIGSGLMVGAPVPYLLRGAQG 247 Query: 234 GSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQ 293 +G+IGH+++ G+ C CG GC ET+ S A+ + A P+ L P Sbjct: 248 LAGEIGHSVLQSGGLYCHCGNRGCAETLVSGWAI-RAALDIPPGVPLEPALQP------- 299 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTII--- 350 + + + + R+ A+G+ L N + LN + I L G GE L + Sbjct: 300 -----RMQDADVQVTLRRAGEALGMLLTNLHHTLNPSDIVLGGSLTRLGEPLLGPALAFF 354 Query: 351 RQTGFNPFDRDEGPSVK 367 R+ + + R S+ Sbjct: 355 REHQHDLYTRTASISIH 371 >UniRef50_Q9KCZ4 Glucokinase n=101 Tax=Bacillales RepID=GLK_BACHD Length = 330 Score = 246 bits (629), Expect = 9e-64, Method: Composition-based stats. Identities = 75/321 (23%), Positives = 124/321 (38%), Gaps = 14/321 (4%) Query: 81 DWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRK---LWP 137 W + ++V T+I+ ++E + + I + Sbjct: 4 RWYVGVDVGGTTIKMAFLTTAGEIVDKWEIPTNKQDGGALITTNIADALDKRLSGHHKSK 63 Query: 138 DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAE 197 I + L G ++ TG W +K LEE+ + V+VDND + AL E Sbjct: 64 SDLIGIGLGAPGFIEMDTGFIYHAVNIGWRD-FPLKDKLEEETKLPVIVDNDANIAALGE 122 Query: 198 KWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDG-VVCDCGRY 255 W+ ++ +I + G+G V N I G +G+IGH V P+G C+CG+ Sbjct: 123 MWKGAGDGAKNMLLITLGTGVGGGIVANGNILHGVNGMAGEIGHITVIPEGGAPCNCGKT 182 Query: 256 GCLETVASLSALKKQARVWLKSQPVSTQLDPEK----LTTAQLIAAWQSGEPWITSWVDR 311 GCLETVAS + + + A + S LT + +A + + + S VD Sbjct: 183 GCLETVASATGIARIATEGVTEHKESQLALDYDKHGVLTAKDVFSAADASDAFALSVVDH 242 Query: 312 SANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQI 371 A +G ++ N N LN +I + G G+ L I + R + Sbjct: 243 IAYYLGFAIANLANALNPEKIVIGGGVSKAGDTLLKPIKQHFEAYALPR----VADGAEF 298 Query: 372 GFGQLSRAQQVLGIGYLYVEA 392 L V+G G+L + Sbjct: 299 RIATLGNDAGVIGGGWLVKQQ 319 >UniRef50_D0MF67 ROK family protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MF67_RHOM4 Length = 417 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 72/405 (17%), Positives = 143/405 (35%), Gaps = 25/405 (6%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M N + + +N ++LE + R +++ +AR +++ VSNI +EL + Sbjct: 1 MLLGTNLKYAKAYNFRIVLETIRRFGPISRAEVARRTELTAQTVSNITRELLDMGLIYEA 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ- 119 + RG S I P+G +++ L++ + + + + A P Sbjct: 61 ERLRDGRGAPSIQLTINPDGAYSIGLDLDRDHLTALLVDFAGQIRHRIHQALDGALPPDK 120 Query: 120 --ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVD-PVTGVSQTMPQ---APWTTPVEVK 173 LL+ + + L + + + I G +D G + P V V Sbjct: 121 AMDLLARTAETLLQETGLPREKIWGVGVGIPGPLDVSEDGHVTNVANPKAFPGWHRVPVV 180 Query: 174 YLLEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSL 232 +LE +L + V ++N+ A+ E+W Q F + G+G + N Q Y G Sbjct: 181 EILERRLELPVFLENNATAAAIGERWYGAGQHIATFFYVFFSEGLGGGLIFNGQPYDGHS 240 Query: 233 YGSGQIGHTIVNPD---GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKL 289 +G++G+ + P+ + L + ++ L ++ + Sbjct: 241 GNAGELGYCYLPPEVLTAEDLTVFQKPHLGILFNVPRLYRRLEAAGHTAR---------- 290 Query: 290 TTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 + L +Q P + W+ + + IL+ I+ GR E + I Sbjct: 291 SLEDLEQLFQEKNPILLDWLHTGLEHLAPIILAVEYILDPEAIFFGGRL---PEPIMTYI 347 Query: 350 IRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 I ++ G LG+ L + QL Sbjct: 348 IEWLT-QRLAALRIEEKPPVRLLPGTAGVDAAALGLATLPLYIQL 391 >UniRef50_C8XGH9 ROK family protein n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XGH9_NAKMY Length = 386 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 77/376 (20%), Positives = 153/376 (40%), Gaps = 15/376 (3%) Query: 15 KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR-GHSSGT 73 + ++ LL A+++ LAR ++S +++ I++ LE VV + R G S Sbjct: 16 RAALVRLLV-HGPASRADLARRLRLSPASLTRIVRTLEDSGLVVESETTVPQRMGRPSQA 74 Query: 74 WLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHR 133 + + + + + I + + G + + + I + Sbjct: 75 MEVNVDAVHLVGIKLLAGEINLVRTDMRSTVLG-HRTIPLQTVPLDPAIDRITEAILAEV 133 Query: 134 KLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVML 193 + P + +++ G VDP + + P W V + L+ E+ G+ +++ND L Sbjct: 134 AVDPA-VGAVGISLAGPVDPSSDMVTHSPFLGWED-VPLARLVSERTGLPTVIENDVRAL 191 Query: 194 ALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDC 252 AE W + DF ++ + GIG VI +++ G+ G+GQIGH + P G +C+ Sbjct: 192 TAAEHWFGAAAGATDFVLVTIGAGIGCGVVIGDRLVDGNTGGAGQIGHLPITPSGPLCER 251 Query: 253 GRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRS 312 G GC + + SA+ QA S L LT A+L++ GE + V + Sbjct: 252 GHRGCARSYLASSAMVGQA---------SMALHRPDLTYAELVSLAHQGERVASRVVRDA 302 Query: 313 ANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIG 372 A+G + I +++ + G ++ + + ++ + G Sbjct: 303 GYALGTLIGLVTAITAPSKVIISGEGVTMVPLVMDVVQERASEVEHWAVPDVPIEIAEFG 362 Query: 373 FGQLSRAQQVLGIGYL 388 F + +R V+ + L Sbjct: 363 FVEWARGAAVIALQQL 378 >UniRef50_D2Q6V0 N-acetylglucosamine repressor n=2 Tax=Bifidobacterium dentium RepID=D2Q6V0_9BIFI Length = 390 Score = 246 bits (629), Expect = 1e-63, Method: Composition-based stats. Identities = 71/394 (18%), Positives = 140/394 (35%), Gaps = 21/394 (5%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 R + +R NK +LE +++ + LA + +S VS + +L E ++ + Sbjct: 4 RTNGSQTSLRRANKANLLESIHKFGAMTQIELAEITGLSTGTVSTQVHQLVEEGKLETHN 63 Query: 62 DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL 121 G + ++ + + L++T + + + E Sbjct: 64 TIRN--GRRATLVALSHDQGLGVGLSITRRDLFLVIIDYSKDIIAEHRLPLPPKHKADTT 121 Query: 122 LSEIEKCWHRH---RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 L + + + + +A+ VD + P +++ L Sbjct: 122 LERAIRLINETLENAGTDAGEIVGIGVALGAPVDFHAQTAAIPGILPGWDGIDIHTPLTT 181 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 + VMVDND A+ E + +++F I + G+GS ++N I G +G+ Sbjct: 182 AFHVPVMVDNDANAAAICEARMGVALGKQNFVYIGTNDGVGSGIMVNGDIMHGVTGLAGE 241 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 IGH V+P G +C CG GCL T+ + L V + +T L+ Sbjct: 242 IGHIQVDPLGSICSCGNRGCLNTIVDEARLVSLLSVTHGN-----------MTMEDLVQT 290 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNP 357 +G+P + +A IG + ++ + + G G+ ++ Sbjct: 291 ANAGDPGCRRVIADAAVRIGTVASDLCISVDPEMVVVGGSLAMSGDTFIEPFSETLQRLL 350 Query: 358 FDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVE 391 F P Q+ Q + LG + +E Sbjct: 351 FPNALTP----IQVLAAQYPDSGSALGAAIMVIE 380 >UniRef50_C9A2C4 Putative uncharacterized protein n=1 Tax=Enterococcus gallinarum EG2 RepID=C9A2C4_ENTGA Length = 388 Score = 246 bits (628), Expect = 1e-63, Method: Composition-based stats. Identities = 71/389 (18%), Positives = 150/389 (38%), Gaps = 25/389 (6%) Query: 11 RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQT--RG 68 R N+ + LEL+ +++ L+ + ++ S I+++L ++ V+ I + G Sbjct: 13 RTKNESLCLELIMNNHNLSRADLSTMTGLTKATTSAIVKKLIEDQLVIEIGTGESSNVGG 72 Query: 69 HSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEY--LQIDAPTPQALLSEIE 126 + ++ +++ I +A + + +D T + +E+ Sbjct: 73 RKPIILQYNGKSGLSISIDIGYNYINGLLAFLDGEEVQSIQKKPIHLDEHTIKDHFTELF 132 Query: 127 KCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMV 186 + + I + +A+HG V G P + + + EE + V + Sbjct: 133 NHFKKSLPETYYGIIGVVIAVHGPVH--EGNVIFTPH-HELAQIPFRDIAEELVDYPVYL 189 Query: 187 DNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPD 246 +N+ + AL E + S+ IN+ GIG+ V N + G+ +G+IGH IV D Sbjct: 190 ENEANLSALGEYTFS-SKSSSLICINMHSGIGAGIVQNGILQTGTNGLAGEIGHQIVVLD 248 Query: 247 GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWIT 306 G+ C CG +GCLE A+ ++ + + + L +Q+ +P Sbjct: 249 GIECPCGNHGCLEMYAANKVCFEKF---------ANIKSMDYVNAIILREYYQNNDPDAI 299 Query: 307 SWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSV 366 + + + + + N + + I L S + E + +I Q + R + Sbjct: 300 HVTEENVHYLSAGINNLVVHYDPEVIIL--NSSLYHE--IPDMIGQLTKSLHSRFSEKVI 355 Query: 367 KATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + + L +LG ++ L Sbjct: 356 VRSSL----LDEKATLLGGLVFNLQRFLN 380 >UniRef50_D1CDD5 ROK family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDD5_THET1 Length = 321 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 69/318 (21%), Positives = 128/318 (40%), Gaps = 10/318 (3%) Query: 81 DWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWPDHT 140 + + +++ + + +AN E+ + +L I +C P Sbjct: 4 RYVIGVDLGGSRVRAVLANEKGEFLDRCEFPTLADKGLYFVLERILECVRSVSSNAP-RI 62 Query: 141 INLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQ 200 + + G ++ GV P P V + L+EEK GI + ND + AL E Sbjct: 63 DAIGVGAPGPINSKEGVVSNPPNLPGWVNVPLAKLIEEKTGIPTFLGNDANLAALGEFTY 122 Query: 201 NNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLE 259 + + + I V G+G +I+ Q+ G +G++GH +V P G C CG YG LE Sbjct: 123 GSGKYVQHLIYITVSTGVGGGIIIDGQLLEGHNGAAGEVGHMVVQPGGPKCSCGGYGHLE 182 Query: 260 TVASLSALKKQARVWLKSQPVSTQLDP----EKLTTAQLIAAWQSGEPWITSWVDRSANA 315 ++S +A+ K+AR + ++ +K+ + A + G+P ++++ Sbjct: 183 ALSSGTAIAKRAREAASLNKDTIMIELAGSVDKINAKIVDEAAKKGDPLALKLLEQAGQW 242 Query: 316 IGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQ 375 +G +L N ++I N I + G GE L + F+ + QI Sbjct: 243 LGYALINLIHIFNPQMISIGGGVSEAGELLLGPARK----VVFEGLMPVFKQDLQIVKAS 298 Query: 376 LSRAQQVLGIGYLYVEAQ 393 L + G L ++ Sbjct: 299 LGGDVGLAGAVALALQES 316 >UniRef50_B4EVY3 Protein Mlc (Making large colonies protein) (ROK-family transcriptional regulator) n=2 Tax=Proteus mirabilis RepID=B4EVY3_PROMH Length = 403 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 77/391 (19%), Positives = 159/391 (40%), Gaps = 15/391 (3%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQT- 66 ++ N + L+ ++ +L++ A ++ +++ I +EL + + Sbjct: 9 DHVKQFNLGTVFRLIDEHGPISRISLSKKATLAPASITKITRELVEAHLIHETEFPGLGF 68 Query: 67 RGHSSGTWLIAPEGDWTLCLNVTPTSIECQV--ANACLSPKGEFEYLQIDAPTP-QALLS 123 RG + + +G LC+ V S+ + + L + F++ + ++ L+ Sbjct: 69 RGRPAVGLKLESKGWQFLCIRVNNGSLLFSLRELDNQLVVEDTFDFPKQNSDAFLHHFLA 128 Query: 124 EIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIR 183 I+ + R++ + +++ ++ VDP++GV + P + + ++EK G+ Sbjct: 129 AIDTFFQRYQSRV-ERLTAISITMNAIVDPISGVIYSSPYYAIQD-IPLADKIQEKTGVA 186 Query: 184 VMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 V + + +AE ++ D I +D +G+ V N + + + + +IGHT Sbjct: 187 VFLQHSVTAWTMAESLYGAAKNNTDILQIVIDDIVGAGVVTNGKTLHSNSHSAVEIGHTK 246 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 V C CG GCLET S+ L K+A+ + P S L+ +T L A G+ Sbjct: 247 VIDSQTQCYCGAKGCLETEISIPQLIKKAQHLAQENPTSI-LNQYPITVETLCDAVLIGD 305 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR-D 361 ++ A +G L +NI N +I + C I+ + R Sbjct: 306 KQALDIINLVAQRLGFILAVMVNIFNPQKILIGSPLCRAKSALFPLILSSIQHHVLPRYA 365 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEA 392 ++ T++ R + L L EA Sbjct: 366 HNLVIEETEL------RNKGTLPAASLVKEA 390 >UniRef50_C6J3G4 Transcriptional repressor n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J3G4_9BACL Length = 304 Score = 245 bits (627), Expect = 2e-63, Method: Composition-based stats. Identities = 55/312 (17%), Positives = 118/312 (37%), Gaps = 18/312 (5%) Query: 82 WTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHR---HRKLWPD 138 + + +++ T + + + P+ ++ + + + Sbjct: 3 YAIGIDIGGTKTAIGLIGTDGEVRTKVSLPTDQTVGPEVMVDRMAAAIQDILTAQGIAES 62 Query: 139 HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEK 198 + + + G ++ G P + L+ + + ++ND ALAEK Sbjct: 63 ELLGIGVGAPGPLNTKEGKIAEPPNLRGWWNFPIVDSLKRYFSLPIRLENDATAAALAEK 122 Query: 199 WQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGC 257 W +++ F I + GIG+ + ++ G+ +G +GH +V+P C CG+ GC Sbjct: 123 WLGAAKDAEHFVFITISTGIGAGIYSHGKLITGASGNAGDVGHIVVDPSVGTCVCGQKGC 182 Query: 258 LETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIG 317 E VAS +A+ +QA L ++++ + +G+P I V + IG Sbjct: 183 WEFVASGTAVARQASELLG----------REVSSKEAFDLAAAGQPVIQELVAKVFENIG 232 Query: 318 LSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLS 377 + +N + ++ + G G+ N + + PS + T I L Sbjct: 233 VGCVTLINTFDPEKLVIGGGVSQVGDPLFNAVRDYVSKYALN----PSGRQTPIVPAALH 288 Query: 378 RAQQVLGIGYLY 389 + ++G L Sbjct: 289 QDAGLIGAAALI 300 >UniRef50_C6PDS2 ROK family protein n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PDS2_CLOTS Length = 311 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 61/314 (19%), Positives = 128/314 (40%), Gaps = 14/314 (4%) Query: 84 LCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKC---WHRHRKLWPDHT 140 + ++V T+I + + A+ +I + + L Sbjct: 3 IGVDVGGTNIAVGLVDENGKIIATGSRPAEPKRGYAAIAKDIAEISLELIKRCGLDISDV 62 Query: 141 INLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQ 200 ++ + + G D G+ W T V + + + + I + +DND + ALAE Sbjct: 63 ESMGIGVPGVADNEKGIVLRAVNLYW-TKVPLVKEIHKYIDIPINMDNDANVAALAEGIF 121 Query: 201 NNSQERDF-CVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLE 259 + + I + G+GS F++N +++ G+ + + ++GH ++ +GV+C+CG+ GC E Sbjct: 122 GAGKGTNSSVTITLGTGVGSGFILNGKVFNGAHHFAPELGHIVLGDNGVMCNCGKIGCFE 181 Query: 260 TVASLSALKKQARVWLKSQPVS-----TQLDPEKLTTAQLIAAWQSGEPWITSWVDRSAN 314 T AS +AL ++ + + S + E +T +I A + + + Sbjct: 182 TYASATALIREGKKAVMKDSNSLILKLAGGEIESITAKNVIDAAKQFDEAAMMIFNDYVK 241 Query: 315 AIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFG 374 + + + N +NIL+ I + G G+ L + + N +D + I Sbjct: 242 YLAMGIVNIINILDPEVIIIGGGVANAGDFLLKPLKEEVSKNILFKDLPYA----DIKKA 297 Query: 375 QLSRAQQVLGIGYL 388 +L ++G L Sbjct: 298 ELGNDAGIIGASIL 311 >UniRef50_C6WCX5 ROK family protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WCX5_ACTMD Length = 382 Score = 245 bits (626), Expect = 2e-63, Method: Composition-based stats. Identities = 83/394 (21%), Positives = 153/394 (38%), Gaps = 29/394 (7%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES-QTRG 68 +R N ++L+ + ++++++A ++ VS+++ + VV E+ G Sbjct: 1 MRRLNSALVLDAIASAPGSSRASVATRTGLTKATVSSLVDRMIGAALVVEGAAEARSGPG 60 Query: 69 HSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGE-FEYLQIDAPTPQALLSEIEK 127 ++P G L + V + + + + A +P +L E+ Sbjct: 61 RRGTALHLSPAGPHGLGVEVGVDYLATCLVDLTGRVRKRWVRDSDNRASSPALVLGEVAA 120 Query: 128 CWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG-----I 182 R + +A+ G V+ +GV + P W V+V+ L LG + Sbjct: 121 AV-RIATREDVPVGGIGVAVPGLVESASGVLRVAPNLGWR-EVDVRGELGRLLGADAGGL 178 Query: 183 RVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 V V N+ + ALAE W ++ +DF ++ + GIG+ V++ ++ G G+IGH Sbjct: 179 PVQVGNEANLAALAELWHGDA-PQDFVHVSGEIGIGAGIVVDAGLFEGVSGFGGEIGHLS 237 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 V+P G C CG GCLE +A + + A A L+A + + Sbjct: 238 VDPSGPRCTCGSRGCLERLAGQDEILRAAGAA---------------DVADLLARLDADD 282 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDE 362 + V +A +G++L +N+L + + L G E WL + R Sbjct: 283 REAVAAVRTAARWLGIALSGAVNLLGLPAVVLGGAYARL-EPWLRPTLEA---ELGGRVV 338 Query: 363 GPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 + + L V G V A L Sbjct: 339 SAAWSPVAVTASSLGDEAAVRGAATSAVRAILAD 372 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A7VQ47 Putative uncharacterized protein n=1 Tax=Clostri... 422 e-116 UniRef50_A8VZR7 Methyltransferase type 11 n=1 Tax=Bacillus selen... 420 e-116 UniRef50_Q9KDW7 Transcriptional repressor of the xylose operon n... 418 e-115 UniRef50_B0KBZ3 ROK family protein n=6 Tax=Thermoanaerobacter Re... 417 e-115 UniRef50_D2LQJ9 ROK family protein n=2 Tax=Bacillus cellulosilyt... 412 e-114 UniRef50_P94490 Xylose repressor n=3 Tax=Bacillus RepID=XYLR1_BACSU 412 e-113 UniRef50_Q67NW4 Transcriptional repressor n=1 Tax=Symbiobacteriu... 412 e-113 UniRef50_Q65CW6 Putative uncharacterized protein n=1 Tax=Bacillu... 409 e-112 UniRef50_B8CZI2 ROK family protein n=1 Tax=Halothermothrix oreni... 404 e-111 UniRef50_C6D1T9 ROK family protein n=1 Tax=Paenibacillus sp. JDR... 398 e-109 UniRef50_C8WTP1 ROK family protein n=2 Tax=Alicyclobacillus acid... 398 e-109 UniRef50_B8D168 ROK family protein n=12 Tax=Clostridia RepID=B8D... 396 e-109 UniRef50_B8CZW2 ROK family protein n=1 Tax=Halothermothrix oreni... 394 e-108 UniRef50_C6IY97 ROK family protein n=1 Tax=Paenibacillus sp. ora... 390 e-107 UniRef50_Q2RLD7 ROK n=1 Tax=Moorella thermoacetica ATCC 39073 Re... 388 e-106 UniRef50_Q5WKJ0 Transcriptional repressor of the xylose operon n... 388 e-106 UniRef50_B8E382 ROK family protein n=2 Tax=Dictyoglomus RepID=B8... 387 e-106 UniRef50_UPI000178870E ROK family protein n=1 Tax=Geobacillus sp... 385 e-105 UniRef50_Q65DK2 Transcriptional regulator XylR n=2 Tax=Bacillus ... 385 e-105 UniRef50_A1HM15 ROK family protein n=1 Tax=Thermosinus carboxydi... 383 e-105 UniRef50_C5D498 ROK family protein n=8 Tax=Geobacillus RepID=C5D... 381 e-104 UniRef50_B8I1T3 ROK family protein n=2 Tax=Clostridium RepID=B8I... 381 e-104 UniRef50_Q1CY52 Transcriptional regulator, ROK family n=1 Tax=My... 379 e-104 UniRef50_C0ZA78 Probable transcriptional regulator n=1 Tax=Brevi... 378 e-103 UniRef50_UPI0001C3682C ROK family protein n=1 Tax=Clostridium ha... 377 e-103 UniRef50_Q8ELU2 Transcriptional repressor of the xylose operon n... 377 e-103 UniRef50_D1CIH3 ROK family protein n=1 Tax=Thermobaculum terrenu... 376 e-103 UniRef50_A8FE34 Transcriptional regulator n=5 Tax=Bacillus RepID... 374 e-102 UniRef50_Q724N5 Xylose repressor protein n=19 Tax=Listeria RepID... 372 e-101 UniRef50_B1YIH1 ROK family protein n=1 Tax=Exiguobacterium sibir... 371 e-101 UniRef50_C5ETA5 ROK domain containing protein n=2 Tax=Clostridia... 370 e-101 UniRef50_C6D7F4 ROK family protein n=2 Tax=Paenibacillus sp. JDR... 369 e-101 UniRef50_Q8EL07 Transcriptional repressor of the xylose operon n... 369 e-100 UniRef50_Q9K992 Transcriptional repressor of the xylose operon n... 366 e-100 UniRef50_Q64GL6 Rep n=2 Tax=Actinobacteria (class) RepID=Q64GL6_... 366 1e-99 UniRef50_Q1AZ04 ROK domain containing protein n=2 Tax=Actinobact... 365 2e-99 UniRef50_B0K1L9 ROK family protein n=9 Tax=Thermoanaerobacterale... 365 2e-99 UniRef50_A5V137 ROK family protein n=2 Tax=Roseiflexus RepID=A5V... 364 3e-99 UniRef50_C8WRQ2 ROK family protein n=2 Tax=Alicyclobacillus acid... 363 5e-99 UniRef50_UPI0001788127 ROK family protein n=1 Tax=Geobacillus sp... 362 1e-98 UniRef50_Q7MLY6 Transcriptional regulator n=62 Tax=Gammaproteoba... 361 3e-98 UniRef50_A8L0L3 ROK family protein n=25 Tax=Actinomycetales RepI... 361 3e-98 UniRef50_Q44406 Xylose repressor n=4 Tax=Clostridia RepID=XYLR_A... 360 6e-98 UniRef50_C6CXN7 ROK family protein n=1 Tax=Paenibacillus sp. JDR... 360 7e-98 UniRef50_UPI00017885B4 ROK family protein n=1 Tax=Geobacillus sp... 358 2e-97 UniRef50_A9BHH0 ROK family protein n=1 Tax=Petrotoga mobilis SJ9... 358 3e-97 UniRef50_A9B0H5 ROK family protein n=1 Tax=Herpetosiphon auranti... 357 4e-97 UniRef50_A4FQW3 Transcriptional regulator, ROK family n=1 Tax=Sa... 356 6e-97 UniRef50_A3DCE9 ROK domain containing protein n=2 Tax=Clostridiu... 355 2e-96 UniRef50_D2SD76 ROK family protein n=1 Tax=Geodermatophilus obsc... 353 7e-96 UniRef50_A7VWZ1 Putative uncharacterized protein n=1 Tax=Clostri... 353 7e-96 UniRef50_B2IDS2 ROK family protein n=2 Tax=Rhizobiales RepID=B2I... 353 8e-96 UniRef50_A9B0W0 ROK family protein n=1 Tax=Herpetosiphon auranti... 352 1e-95 UniRef50_C7M5N9 ROK family protein n=21 Tax=Bacteroidetes RepID=... 352 1e-95 UniRef50_D2PV61 ROK family protein n=1 Tax=Kribbella flavida DSM... 350 4e-95 UniRef50_P0AF22 N-acetylglucosamine repressor n=95 Tax=Gammaprot... 350 6e-95 UniRef50_Q47NL3 Putative transcriptional repressor protein n=1 T... 349 9e-95 UniRef50_P76586 Uncharacterized protein yphH n=68 Tax=Enterobact... 349 1e-94 UniRef50_A0KIG1 N-acetylglucosamine repressor n=151 Tax=Gammapro... 348 2e-94 UniRef50_A9KTE3 ROK family protein n=1 Tax=Clostridium phytoferm... 348 2e-94 UniRef50_C5RGV2 ROK family protein n=2 Tax=Clostridium RepID=C5R... 348 2e-94 UniRef50_C7QZA5 ROK family protein n=1 Tax=Jonesia denitrificans... 348 3e-94 UniRef50_UPI0001C31B1F ROK family protein n=1 Tax=Conexibacter w... 346 7e-94 UniRef50_C1XPR1 Transcriptional regulator/sugar kinase n=14 Tax=... 346 8e-94 UniRef50_C5CH51 ROK family protein n=1 Tax=Kosmotoga olearia TBF... 345 3e-93 UniRef50_C7MQX8 Transcriptional regulator/sugar kinase n=2 Tax=S... 345 3e-93 UniRef50_Q5WCD4 Transcriptional repressor of the xylose operon n... 344 3e-93 UniRef50_C7R1E2 ROK family protein n=1 Tax=Jonesia denitrificans... 344 4e-93 UniRef50_Q82LB9 Putative ROK-family transcriptional regulator n=... 344 4e-93 UniRef50_C5CNA8 ROK family protein n=1 Tax=Variovorax paradoxus ... 343 5e-93 UniRef50_B4V8E4 ROK-family transcriptional regulator n=5 Tax=Str... 343 7e-93 UniRef50_C7PY53 ROK family protein n=1 Tax=Catenulispora acidiph... 341 3e-92 UniRef50_A6TUP6 ROK family protein n=1 Tax=Alkaliphilus metallir... 341 4e-92 UniRef50_C6Y2I3 ROK family protein n=4 Tax=Sphingobacteriales Re... 340 5e-92 UniRef50_D2ASC3 Transcriptional repressor of the xylose operon n... 340 5e-92 UniRef50_Q0FFU4 Xylose operon repressor n=6 Tax=Rhodobacterales ... 339 7e-92 UniRef50_Q1IZX8 ROK domain protein n=1 Tax=Deinococcus geotherma... 339 8e-92 UniRef50_A8VRA6 Nitrilase/cyanide hydratase and apolipoprotein N... 338 2e-91 UniRef50_Q47PH9 Putative xylose repressor n=1 Tax=Thermobifida f... 338 2e-91 UniRef50_A9WVF3 Transcriptional regulator, ROK family n=4 Tax=Mi... 338 3e-91 UniRef50_D2PL28 ROK family protein n=18 Tax=Actinomycetales RepI... 337 5e-91 UniRef50_A6LW15 ROK family protein n=5 Tax=Clostridium RepID=A6L... 336 6e-91 UniRef50_D1BAX4 Transcriptional regulator/sugar kinase n=2 Tax=A... 336 8e-91 UniRef50_A6CIT4 Transcriptional repressor of the xylose operon n... 336 8e-91 UniRef50_D1BCW6 Transcriptional regulator/sugar kinase n=1 Tax=S... 336 1e-90 UniRef50_B5I1X5 ROK domain-containing protein n=8 Tax=Streptomyc... 336 1e-90 UniRef50_A3TWQ2 Xylose repressor, putative n=1 Tax=Oceanicola ba... 336 1e-90 UniRef50_C6LF86 Putative xylose repressor n=1 Tax=Bryantella for... 334 2e-90 UniRef50_A5FUR2 ROK family protein n=1 Tax=Acidiphilium cryptum ... 334 3e-90 UniRef50_C9LAU2 Transcriptional repressor of the xylose operon n... 334 3e-90 UniRef50_C5BZR0 ROK family protein n=3 Tax=Micrococcineae RepID=... 334 3e-90 UniRef50_C1F498 ROK family protein n=1 Tax=Acidobacterium capsul... 334 5e-90 UniRef50_A8RG91 Putative uncharacterized protein n=1 Tax=Clostri... 333 5e-90 UniRef50_UPI00017899E8 ROK family protein n=1 Tax=Geobacillus sp... 333 7e-90 UniRef50_A0LSD8 ROK family protein n=1 Tax=Acidothermus cellulol... 333 9e-90 UniRef50_C9YT50 Putative ROK family transcriptional regulator n=... 333 9e-90 UniRef50_Q024A9 ROK family protein n=1 Tax=Candidatus Solibacter... 333 1e-89 UniRef50_B5YE80 Glucokinase n=2 Tax=Dictyoglomus RepID=B5YE80_DICT6 332 1e-89 UniRef50_A1SS79 ROK family protein n=2 Tax=Psychromonas RepID=A1... 332 1e-89 UniRef50_A9F5U1 Transcriptional regulator of the ROK-family n=1 ... 332 1e-89 UniRef50_D1BD00 Transcriptional regulator/sugar kinase n=4 Tax=A... 332 2e-89 UniRef50_C1YJZ1 Transcriptional regulator/sugar kinase n=1 Tax=N... 332 2e-89 UniRef50_C6Y2I2 ROK family protein n=5 Tax=Bacteroidetes RepID=C... 331 3e-89 UniRef50_A9WM33 Glucokinase n=4 Tax=Micrococcaceae RepID=A9WM33_... 331 4e-89 UniRef50_Q9KEZ9 Transcriptional repressor of the xylose operon n... 330 5e-89 UniRef50_C1XND9 Transcriptional regulator, MarR family n=1 Tax=M... 330 5e-89 UniRef50_C1D0G6 Putative transcriptional regulator, NagC family ... 330 6e-89 UniRef50_B2V1I0 Putative transcriptional repressor of the xylose... 330 7e-89 UniRef50_B0RFZ3 Putative ROK-family transcriptional regulator n=... 329 7e-89 UniRef50_A9WTI5 Transcriptional regulator, ROK family n=1 Tax=Re... 329 8e-89 UniRef50_A5N8K8 Transcriptional regulator n=31 Tax=Clostridium R... 329 8e-89 UniRef50_B8CYI5 Glucokinase n=1 Tax=Halothermothrix orenii H 168... 329 9e-89 UniRef50_D2PPF8 ROK family protein n=2 Tax=Actinomycetales RepID... 329 1e-88 UniRef50_C7PW32 ROK family protein n=1 Tax=Catenulispora acidiph... 329 1e-88 UniRef50_UPI0001C357A7 transcriptional repressor n=1 Tax=Clostri... 327 4e-88 UniRef50_Q67KQ9 Transcriptional repressor n=1 Tax=Symbiobacteriu... 327 4e-88 UniRef50_Q1GMG9 ROK domain protein n=6 Tax=Rhodobacteraceae RepI... 327 4e-88 UniRef50_D0GID9 Putative xylose repressor n=1 Tax=Leptotrichia g... 327 5e-88 UniRef50_C0GDS7 ROK family protein n=1 Tax=Dethiobacter alkaliph... 327 5e-88 UniRef50_A1SG81 ROK family protein n=2 Tax=Nocardioides sp. JS61... 327 5e-88 UniRef50_Q0SE61 Possible xylose repressor n=11 Tax=Actinomycetal... 326 6e-88 UniRef50_C6A8T4 ROK family transcriptional regulator n=7 Tax=Bif... 326 9e-88 UniRef50_B8D084 ROK family protein n=1 Tax=Halothermothrix oreni... 326 1e-87 UniRef50_A8F6K2 ROK family protein n=1 Tax=Thermotoga lettingae ... 326 1e-87 UniRef50_A1WMZ8 ROK family protein n=2 Tax=Proteobacteria RepID=... 326 1e-87 UniRef50_A5ZML3 Putative uncharacterized protein n=1 Tax=Ruminoc... 325 1e-87 UniRef50_C9XQA7 Xylose repressor n=6 Tax=Clostridium difficile R... 325 1e-87 UniRef50_B2GIX7 Putative NagC family transcriptional regulator n... 325 2e-87 UniRef50_B3DR20 NagC-type Transcriptional regulator n=6 Tax=Bifi... 325 2e-87 UniRef50_C5CH81 ROK family protein n=1 Tax=Kosmotoga olearia TBF... 325 2e-87 UniRef50_C0ZJD3 Probable transcriptional regulator n=1 Tax=Brevi... 324 2e-87 UniRef50_UPI0001C3141A ROK family protein n=1 Tax=Conexibacter w... 324 2e-87 UniRef50_D2Q094 Glucokinase, ROK family n=2 Tax=Kribbella flavid... 324 3e-87 UniRef50_UPI0001C31CF6 ROK family protein n=1 Tax=Conexibacter w... 324 5e-87 UniRef50_A6X1U5 ROK family protein n=3 Tax=Rhizobiales RepID=A6X... 323 7e-87 UniRef50_C5EFJ1 Xylose repressor n=3 Tax=Clostridiales RepID=C5E... 323 1e-86 UniRef50_D2PYX6 ROK family protein n=1 Tax=Kribbella flavida DSM... 322 1e-86 UniRef50_B8FTN1 ROK family protein n=3 Tax=Clostridiales RepID=B... 322 2e-86 UniRef50_C6B3W7 ROK family protein n=11 Tax=Rhizobiaceae RepID=C... 321 2e-86 UniRef50_C6W7D4 ROK family protein n=1 Tax=Dyadobacter fermentan... 321 2e-86 UniRef50_C6PY82 ROK family protein n=1 Tax=Clostridium carboxidi... 321 2e-86 UniRef50_D2PSG4 ROK family protein n=1 Tax=Kribbella flavida DSM... 321 3e-86 UniRef50_UPI0001B57B53 transcriptional regulator n=1 Tax=Strepto... 321 3e-86 UniRef50_C9ZFY3 Putative xylose repressor n=2 Tax=Streptomyces R... 321 4e-86 UniRef50_Q1IJT5 Glucokinase n=1 Tax=Candidatus Koribacter versat... 320 4e-86 UniRef50_D2Q6V0 N-acetylglucosamine repressor n=2 Tax=Bifidobact... 320 7e-86 UniRef50_D1NUM3 Transcriptional repressor in the Rok family prot... 319 9e-86 UniRef50_B0MWK5 Putative uncharacterized protein n=1 Tax=Alistip... 319 1e-85 UniRef50_UPI000178996E ROK family protein n=1 Tax=Geobacillus sp... 319 1e-85 UniRef50_B9K724 ROK family protein n=1 Tax=Thermotoga neapolitan... 319 1e-85 UniRef50_B0PG67 Putative uncharacterized protein n=1 Tax=Anaerot... 319 2e-85 UniRef50_C5RVI1 Glucokinase, ROK family n=11 Tax=Thermoanaerobac... 318 2e-85 UniRef50_C6P958 ROK family protein n=2 Tax=Thermoanaerobacterale... 318 2e-85 UniRef50_C0D3V9 Putative uncharacterized protein n=1 Tax=Clostri... 318 3e-85 UniRef50_C9Y7Z7 Putative uncharacterized protein n=1 Tax=Curviba... 318 3e-85 UniRef50_A0AF76 XylR protein n=1 Tax=Listeria welshimeri serovar... 318 3e-85 UniRef50_C9BHD6 Xylose operon repressor n=1 Tax=Enterococcus fae... 318 3e-85 UniRef50_C4RIY1 ROK-family transcriptional regulator n=1 Tax=Mic... 318 3e-85 UniRef50_O82844 Xylose repressor n=2 Tax=Enterococcaceae RepID=O... 317 4e-85 UniRef50_C5C348 ROK family protein n=1 Tax=Beutenbergia cavernae... 317 4e-85 UniRef50_C7Q6P6 ROK family protein n=1 Tax=Catenulispora acidiph... 317 6e-85 UniRef50_A4AFQ9 Putative ROK-family transcriptional regulator n=... 316 7e-85 UniRef50_A8S1Z3 Putative uncharacterized protein n=1 Tax=Clostri... 316 7e-85 UniRef50_C5C1Z1 ROK family protein n=2 Tax=Actinomycetales RepID... 316 8e-85 UniRef50_C9A2C4 Putative uncharacterized protein n=1 Tax=Enteroc... 315 2e-84 UniRef50_C5EN99 Predicted protein n=1 Tax=Clostridiales bacteriu... 315 2e-84 UniRef50_Q2RK90 Glucokinase n=1 Tax=Moorella thermoacetica ATCC ... 314 3e-84 UniRef50_B5XVY7 ROK family protein n=6 Tax=Proteobacteria RepID=... 314 5e-84 UniRef50_D1BAZ9 Transcriptional regulator/sugar kinase n=2 Tax=M... 313 6e-84 UniRef50_Q9KCZ4 Glucokinase n=101 Tax=Bacillales RepID=GLK_BACHD 313 9e-84 UniRef50_C6J3G4 Transcriptional repressor n=1 Tax=Paenibacillus ... 313 1e-83 UniRef50_B5GCP5 Transcriptional regulator n=2 Tax=Streptomyces R... 312 1e-83 UniRef50_C6WCK9 ROK family protein n=6 Tax=Actinomycetales RepID... 312 2e-83 UniRef50_UPI0001C35AB4 xylose repressor protein n=1 Tax=Clostrid... 312 2e-83 UniRef50_C7Q516 ROK family protein n=1 Tax=Catenulispora acidiph... 312 2e-83 UniRef50_A9WL96 Transcriptional regulator/sugar kinase n=13 Tax=... 312 2e-83 UniRef50_Q6A638 Transcriptional regulator, ROK family n=1 Tax=Pr... 311 2e-83 UniRef50_Q9Z557 Putative ROK family transcriptional regulator n=... 311 2e-83 UniRef50_A5CYL2 Transcriptional regulator/sugar kinase n=4 Tax=C... 311 2e-83 UniRef50_C1I2A3 Xylose repressor protein n=1 Tax=Clostridium sp.... 311 3e-83 UniRef50_D1CDD5 ROK family protein n=1 Tax=Thermobaculum terrenu... 311 3e-83 UniRef50_A9WJ57 ROK family protein n=2 Tax=Chloroflexus RepID=A9... 311 4e-83 UniRef50_C8ZX67 Xylose operon repressor n=4 Tax=Enterococcus Rep... 310 6e-83 UniRef50_Q185Y3 Putative regulator of a specific sugar metabolis... 310 6e-83 UniRef50_D2QLA5 ROK family protein n=1 Tax=Spirosoma linguale DS... 310 7e-83 UniRef50_B7GQ98 ROK family protein n=10 Tax=Bifidobacterium RepI... 309 9e-83 UniRef50_B0PDL5 Putative uncharacterized protein n=1 Tax=Anaerot... 309 1e-82 UniRef50_B8E0R0 ROK family protein n=2 Tax=Dictyoglomus RepID=B8... 309 1e-82 UniRef50_C6PDS2 ROK family protein n=1 Tax=Thermoanaerobacterium... 309 1e-82 UniRef50_C6JR29 XylR transcriptional regulator n=2 Tax=Fusobacte... 308 2e-82 UniRef50_C7MXJ9 Transcriptional regulator/sugar kinase n=1 Tax=S... 308 2e-82 UniRef50_A3I7X3 Putative uncharacterized protein n=1 Tax=Bacillu... 308 2e-82 UniRef50_A0P1K5 Xyl repressor n=2 Tax=Labrenzia RepID=A0P1K5_9RHOB 308 3e-82 UniRef50_B9JL48 Transcriptional regulator protein n=1 Tax=Agroba... 307 4e-82 UniRef50_Q97D10 XylR transcriptional regulator n=1 Tax=Clostridi... 307 4e-82 UniRef50_C7QHP4 ROK family protein n=1 Tax=Catenulispora acidiph... 307 4e-82 UniRef50_P50456 Protein mlc n=167 Tax=Gammaproteobacteria RepID=... 307 5e-82 UniRef50_Q1Q3C7 Similar to glucokinase n=1 Tax=Candidatus Kuenen... 306 7e-82 UniRef50_C9NFC9 ROK family protein n=10 Tax=Streptomyces RepID=C... 306 7e-82 UniRef50_B7DT25 ROK family protein n=1 Tax=Alicyclobacillus acid... 306 8e-82 UniRef50_D2PQN5 ROK family protein n=1 Tax=Kribbella flavida DSM... 306 8e-82 UniRef50_B5GK61 ROK family protein n=2 Tax=Streptomyces RepID=B5... 306 9e-82 UniRef50_D1VEG0 ROK family protein n=1 Tax=Frankia sp. EuI1c Rep... 306 9e-82 UniRef50_C6B6F2 ROK family protein n=8 Tax=Rhizobium RepID=C6B6F... 306 1e-81 UniRef50_A6EIN5 ROK n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIN5_9SPHI 306 1e-81 UniRef50_D0MF67 ROK family protein n=1 Tax=Rhodothermus marinus ... 305 1e-81 UniRef50_A0LTZ1 ROK family protein n=1 Tax=Acidothermus cellulol... 305 1e-81 UniRef50_C4ZGB0 Putative NAGC-like transcriptional regulator n=1... 305 2e-81 UniRef50_A3UNW3 Probable transcriptional repressor in the Rok (N... 305 2e-81 UniRef50_D1ANX8 ROK family protein n=1 Tax=Sebaldella termitidis... 304 2e-81 UniRef50_D2BD51 Transcriptional repressor of the xylose operon n... 304 3e-81 UniRef50_C6WCX5 ROK family protein n=1 Tax=Actinosynnema mirum D... 304 3e-81 UniRef50_B5YAB7 Xylose repressor n=1 Tax=Dictyoglomus thermophil... 304 3e-81 UniRef50_A6WEF3 ROK family protein n=2 Tax=Actinomycetales RepID... 304 4e-81 UniRef50_C9L9I3 Putative regulator n=1 Tax=Blautia hansenii DSM ... 304 4e-81 UniRef50_B5GKQ2 ROK family transcriptional regulator (Fragment) ... 304 5e-81 UniRef50_A4XCV6 ROK family protein n=2 Tax=Salinispora RepID=A4X... 304 5e-81 UniRef50_Q1J318 ROK domain protein n=2 Tax=Bacteria RepID=Q1J318... 303 6e-81 UniRef50_C5ESH3 Glucokinase n=1 Tax=Clostridiales bacterium 1_7_... 303 6e-81 UniRef50_A6NTH3 Putative uncharacterized protein n=1 Tax=Bactero... 303 6e-81 UniRef50_UPI0001B509AF ROK family protein n=2 Tax=Streptomyces h... 303 8e-81 UniRef50_A7VV97 Putative uncharacterized protein n=1 Tax=Clostri... 303 8e-81 UniRef50_C0X1R1 Transcriptional regulator n=13 Tax=Enterococcus ... 303 1e-80 UniRef50_A3TGR1 Transcriptional regulator, Rok family protein n=... 302 2e-80 UniRef50_B0MNG8 Putative uncharacterized protein n=2 Tax=Clostri... 302 2e-80 UniRef50_A4BCC4 Probable transcriptional regulator n=1 Tax=Reine... 301 2e-80 UniRef50_C6CR95 ROK family protein n=1 Tax=Paenibacillus sp. JDR... 301 3e-80 UniRef50_C7Q736 ROK family protein n=1 Tax=Catenulispora acidiph... 301 3e-80 UniRef50_C2FZL1 ROK family transcriptional repressor protein n=6... 301 3e-80 UniRef50_B6A233 ROK family protein n=6 Tax=Rhizobiales RepID=B6A... 301 4e-80 UniRef50_B0K0J6 ROK family protein n=8 Tax=Thermoanaerobacter Re... 301 4e-80 UniRef50_C3QC45 ROK family transcriptional repressor protein n=1... 301 4e-80 UniRef50_A5N1R7 Predicted transcriptional regulator n=2 Tax=Clos... 301 4e-80 UniRef50_D2ATI4 ROK family protein n=1 Tax=Streptosporangium ros... 300 5e-80 UniRef50_A4BDK2 N-acetylglucosamine repressor n=1 Tax=Reinekea b... 300 6e-80 UniRef50_A8UDG8 Xylose repressor protein n=2 Tax=Firmicutes RepI... 300 6e-80 UniRef50_B8DZP0 ROK family protein n=2 Tax=Dictyoglomus RepID=B8... 300 7e-80 UniRef50_C6WP29 ROK family protein n=1 Tax=Actinosynnema mirum D... 300 7e-80 UniRef50_C7MQ22 Transcriptional regulator/sugar kinase n=1 Tax=S... 299 1e-79 UniRef50_A5G397 ROK family protein n=7 Tax=Geobacter RepID=A5G39... 299 1e-79 UniRef50_C0CHG9 Putative uncharacterized protein n=1 Tax=Blautia... 299 1e-79 UniRef50_D2B0X7 ROK family protein n=2 Tax=Actinomycetales RepID... 298 2e-79 UniRef50_D1AWX4 ROK family protein n=1 Tax=Streptobacillus monil... 298 3e-79 UniRef50_D1AY92 Glucokinase, ROK family n=4 Tax=Bacteria RepID=D... 298 3e-79 UniRef50_D1Y8Z8 ROK family protein n=3 Tax=Propionibacterium acn... 298 4e-79 UniRef50_C7PXL8 ROK family protein n=2 Tax=Actinomycetales RepID... 297 4e-79 UniRef50_A8F699 ROK family protein n=1 Tax=Thermotoga lettingae ... 297 5e-79 UniRef50_B5ZXX6 ROK family protein n=10 Tax=Alphaproteobacteria ... 296 8e-79 UniRef50_C0W5B1 Transcriptional regulator/sugar kinase n=1 Tax=A... 296 9e-79 UniRef50_A5IKW0 ROK family protein n=6 Tax=Thermotogaceae RepID=... 296 9e-79 Sequences not found previously or not previously below threshold: >UniRef50_A7VQ47 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VQ47_9CLOT Length = 401 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 90/402 (22%), Positives = 164/402 (40%), Gaps = 16/402 (3%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 ++ + HNK ++ + ++ +ARL +SIP V I E + + Sbjct: 3 KVDKSIVGIHNKEAVINTIRDNSPIFRAEIARLTGLSIPTVMKITDEFKESGLIYESGKR 62 Query: 64 SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLS 123 + G P+ + + ++V T + + + D T +L Sbjct: 63 TSEVGKPPKLLSFVPDAKYIIGVDVGTTHVGAVLMDLSAKILLREWAPTHDGHTFPQVLE 122 Query: 124 EIEKCWHRHRKLWPD---HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 + +C + + + + + + G + TG P W L+E+ Sbjct: 123 QTIQCIQKILDASSEYAGKILGIGVGVPGLISVETGKIILSPAIGWHEG-NFLAPLKERF 181 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 + V+VDN +A+ E W + +F I + YGIGSS VI +QIY GS SG+ G Sbjct: 182 RLPVVVDNVVRAMAMGELWFGAGRGLENFFCIGLGYGIGSSIVIGKQIYSGSTGTSGEFG 241 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLD-----PEKLTTAQL 294 H ++ G +CDCG YGCLE +AS +A+ KQAR + + S D + + Sbjct: 242 HMTIDKSGPLCDCGCYGCLEAIASANAISKQARFAISNGANSMMFDIIHGNLNDINAKVV 301 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTG 354 A ++G+ + V++ +G+++ N +N+L+ I L G G+ LN ++ + Sbjct: 302 FDAAKAGDSLANTIVNQVTVYLGIAISNVINLLDPQLIILGGGVSQAGDFLLNPLLDEVS 361 Query: 355 FNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 + VK I L +G ++ + Sbjct: 362 RHVL------PVKEPHIVISSLGEDAVAIGAATFLLKEYVES 397 >UniRef50_A8VZR7 Methyltransferase type 11 n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VZR7_9BACI Length = 404 Score = 420 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 85/400 (21%), Positives = 170/400 (42%), Gaps = 13/400 (3%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 + + ++ N+ +++ ++ R+ +++ +++ A ++ P V+NI+ +L E V Sbjct: 6 TGSFRLMKSLNRSLVINIIRRKGPISRTDISKQANLTPPTVTNIVNDLLKEGLVKEGRTG 65 Query: 64 SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLS 123 + G I + + ++V I ++N + ++ Sbjct: 66 ASKGGRRPVLLSINYNNHYVIGVDVGTGQIRVGLSNLNAELLNRKKETLPAGIKAGEFMT 125 Query: 124 EIEKCWHRH---RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 + + + D + + + +HG VD G+S P + + +K LE + Sbjct: 126 ILYRLVDDMITNSDVSRDKIVGIGIGMHGIVDEEKGISIYAPHFDF-GELPLKERLEARY 184 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 I V V+ND A+AE W +++ + INV GIG+ ++N QI+RG + +G++G Sbjct: 185 EIPVKVENDARCSAIAEMWFGDTRANPNLVFINVGDGIGAGVILNGQIHRGHHHIAGELG 244 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQ----LDPEKLTTAQLI 295 H IV+ +G C CG YGCL TVAS ++++A + + + E + + Sbjct: 245 HMIVDLNGRQCTCGSYGCLHTVASGIHIRERAIHEITLGRSTALREMRENKEDIDGEVIY 304 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF 355 A G+ + ++ +GL++ N +N LN +QI L G G + ++ Sbjct: 305 EAALHGDEFAEELFAQAGRFLGLAVTNVINFLNPDQIVLGGGVMKAGAFVMKPLVETVNR 364 Query: 356 NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 R + T+I L +LG L + Sbjct: 365 ----RALTDDARKTEITVSSLGSHSALLGAVSLILHDVFE 400 >UniRef50_Q9KDW7 Transcriptional repressor of the xylose operon n=2 Tax=Bacillus RepID=Q9KDW7_BACHD Length = 407 Score = 418 bits (1075), Expect = e-115, Method: Composition-based stats. Identities = 93/406 (22%), Positives = 177/406 (43%), Gaps = 14/406 (3%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M + Q ++ N+ +IL + +++ +A+ +++ P V+NI+ EL EK V Sbjct: 1 MPVAGSFQLMKSMNRSLILNTIRLDGPISRADIAKKTKLTPPTVTNIVAELIEEKLVRES 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 G I + + + L+V + + + +G+ T + Sbjct: 61 KMGESRGGRKPILLTIDAKNSFVIGLDVGGYRVRAVLTDLNGEVEGQTTVELSSDLTEET 120 Query: 121 LLSEIEKC---WHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 L+ ++ K K+ D I + + +HG VD +G++ P T +++K E Sbjct: 121 LIDQLIKITVTLFEQCKMQKDKVIGIGIGMHGIVDHQSGMAVFAPNFQ-LTNIDLKTPFE 179 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 + V V+ND LAL E W N Q +NV GIG+ V+N++++ G +G Sbjct: 180 STFDVPVFVENDARALALGETWFGNGQGIDHVICVNVGVGIGAGIVLNKRLFHGVHGIAG 239 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQ-----LDPEKLTT 291 +IGHT V+ G C CG YGCL+TVA + LK++A + S + D ++++ Sbjct: 240 EIGHTTVDIHGKKCTCGNYGCLQTVAGGNMLKERAIHDIASGRKTMLLEKVEGDMDRISG 299 Query: 292 AQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIR 351 + +G+P ++ + +G+ + N +N +N ++I + G G+ L + + Sbjct: 300 EIIHQCALAGDPLSIEILEEAGKYLGIGITNIINFINPDRIIVGGGVSKAGDFVLEPLRK 359 Query: 352 QTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 R + T++ +L +G L +E I Sbjct: 360 MVKE----RALTAKARETEVVTAELGEWGTAIGAVTLVLEDLFAPI 401 >UniRef50_B0KBZ3 ROK family protein n=6 Tax=Thermoanaerobacter RepID=B0KBZ3_THEP3 Length = 408 Score = 417 bits (1072), Expect = e-115, Method: Composition-based stats. Identities = 90/399 (22%), Positives = 167/399 (41%), Gaps = 9/399 (2%) Query: 1 MR-ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVN 59 M+ N + I+ N+ +++ + +++ +++ + + V+NI++ELE++ V Sbjct: 1 MKLRIGNKELIKDINRSLVINEIRMNGPISRTDISKNLNLGLSTVTNIVEELENQNLVHE 60 Query: 60 IDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ 119 + + T G + + + + ++ + N + Sbjct: 61 VGEADSTGGRKPILLEFNYNYGYIIGIKIEENNLIFALTNLKSEIIEKRVVPFKKGTNSN 120 Query: 120 ALLSEIEKCWHRHRKLWPDH--TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 +L+ + + + P + + + +A+ G VD G W+ VE+ +LE Sbjct: 121 TVLNMVVENIEKLITKIPYNKNLMGIGVAVSGLVDQQKGKLIYSGMLNWSN-VEIGNILE 179 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 K + V +DND LAE W + +E +F V+ GIGS VIN+++Y G G+G Sbjct: 180 NKFNVPVYIDNDVNAYTLAELWYGHGRELNNFIVVTYGSGIGSGIVINKKLYTGDFGGAG 239 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 +IGH ++ +G C+CG+ GCLE AS + R +K S E L+ ++ Sbjct: 240 EIGHMVLVAEGRKCECGQRGCLEAYASEDFIVDYIRDNIKMYSESKIDLTEDLSIEKVYE 299 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 + G+ + SA +G L + +N+LN + I L G + L I N Sbjct: 300 YAKEGDMLAIDVLRLSAKYLGYGLLSVINLLNPSTIILAGEGMIAKDIILPVINDIVKNN 359 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 F E K QI +L V+G L + Sbjct: 360 FFKMHE----KKVQIKVSELGDEGWVIGASTLAISKLFE 394 >UniRef50_D2LQJ9 ROK family protein n=2 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LQJ9_BACS4 Length = 419 Score = 412 bits (1061), Expect = e-114, Method: Composition-based stats. Identities = 91/406 (22%), Positives = 173/406 (42%), Gaps = 16/406 (3%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRV-VN 59 + + + ++ NK IL ++ + +++ +A++ +++ P V +I+ EL K V Sbjct: 4 IPQTGSFEGMKSLNKTAILNIIRLKGPISRAEIAKMTKLTPPTVGSIVGELIDSKMVIEE 63 Query: 60 IDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ 119 + G I + + + I +A E PT Sbjct: 64 TGESKSHGGRKPIMLTINASSYYVIGIYGAREIIHTVIATLDGKISYSNEEKLSTPPTKD 123 Query: 120 ALLSEIEKCWHRHR---KLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 + ++ + ++ + + + + +HG VDP G+S P + +K L Sbjct: 124 EYIDLLKNGVEKVLQQKRIKQNKVLGIGVGMHGLVDPQKGISIFSPHLHIEN-IPIKQEL 182 Query: 177 EEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 E I V+VDND LALAE W ++ +F ++V GIGS ++N +IY G + + Sbjct: 183 ESAFDIPVLVDNDVRTLALAESWYGEGKDISNFVCLSVGLGIGSGIMLNGEIYTGQYHSA 242 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLD-----PEKLT 290 G+IGHT+V+ +G C CG YGCLE AS A+ + + L+ + D +LT Sbjct: 243 GEIGHTVVDINGPRCQCGNYGCLEAYASELAIISRVKKGLRLGRSTIINDWIKETDSQLT 302 Query: 291 TAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAF-GENWLNTI 349 + A + G+ ++ ++ + +G+++ N +NIL +++ L GR G L+ + Sbjct: 303 IEMVFDAAEKGDAFVLEVLEETGRFLGIAVANLINILTPSKVILEGRIFEAGGNTLLSPL 362 Query: 350 IRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + I L + V+G L ++ Sbjct: 363 KEIIKKSSLR----SYSDDVSIVTSDLGKKGMVIGAFTLVLKELYT 404 >UniRef50_P94490 Xylose repressor n=3 Tax=Bacillus RepID=XYLR1_BACSU Length = 384 Score = 412 bits (1060), Expect = e-113, Method: Composition-based stats. Identities = 72/397 (18%), Positives = 159/397 (40%), Gaps = 22/397 (5%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 + ++ N+ ++L+ + + +++ L+ + ++ VS+ + L E V I Sbjct: 4 ADQTFVKKVNQKLLLKEILKNSPISRAKLSEMTGLNKSTVSSQVNTLMKESMVFEIGQGQ 63 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ---AL 121 + G + + +++ ++V I + + + +Y +++ +P+ + Sbjct: 64 SSGGRRPVMLVFNKKAGYSVGIDVGVDYINGILTDLEGTIVL-DQYRHLESNSPEITKDI 122 Query: 122 LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 L ++ + P I + + + G +D P + W +++K ++EK Sbjct: 123 LIDMIHHFITQMPQSPYGLIGIGICVPGLIDKDQ-KIVFTPNSNWRD-IDLKSSIQEKYN 180 Query: 182 IRVMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + V ++N+ A EK ++ + +++ GIG +IN +YRG SG++GH Sbjct: 181 VPVFIENEANAGAYGEKVFGAAKNHDNIIYVSISTGIGIGVIINNHLYRGVSGFSGEMGH 240 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 ++ +G C CG GC E AS AL K S Q +KL+ +I Sbjct: 241 MTIDFNGPKCSCGNRGCWELYASEKALLK-----------SLQTKEKKLSYQDIINLAHL 289 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 + + + +G+ L N LN N + L LN++ + + + Sbjct: 290 NDIGTLNALQNFGFYLGIGLTNILNTFNPQAVILRNSIIESHPMVLNSMRSEVSSRVYSQ 349 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 ++ L + LG+ + ++ L I Sbjct: 350 LGNSY----ELLPSSLGQNAPALGMSSIVIDHFLDMI 382 >UniRef50_Q67NW4 Transcriptional repressor n=1 Tax=Symbiobacterium thermophilum RepID=Q67NW4_SYMTH Length = 403 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 86/400 (21%), Positives = 162/400 (40%), Gaps = 17/400 (4%) Query: 7 NQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQT 66 + IR NK +L L+ +++ LA ++ P VS ++ EL E V I + Sbjct: 5 PELIRAINKQRVLRLVRSAGAMSRADLAERTGLTRPTVSAVVAELLEEGWVEEIGTGESS 64 Query: 67 RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIE 126 G P W + + + +A+ + F+ + ++E Sbjct: 65 GGRPPILLRFNPRARWVIGAELGAGHVRAVLADLAGNVFHRFKQRVESRDPLIEV-DQLE 123 Query: 127 KCWHRHRKLWPD-----HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + P + + I G +DP GV + P + V +L+E+L Sbjct: 124 RAVRYLLDQTPRYGPPTPVAGVGIGITGVIDPEEGVWRYSPHYQVRD-LPVAPMLQERLS 182 Query: 182 IRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + V ++ND +A E+ +Q + I V G+G+ +I+ ++Y G+ G+G+IGH Sbjct: 183 LPVWIENDARAMAWGERSFGAAQGVDNLAFIRVGVGLGAGIIIDGRLYGGAHQGAGEIGH 242 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVST-----QLDPEKLTTAQLI 295 +V G+ C CG GCLETV S A+ ++A + + DP K+ +I Sbjct: 243 IMVKERGLRCRCGSDGCLETVGSAIAIARRAVQRMAQGEETLIRELCGGDPSKVIATTVI 302 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF 355 A +G+ + + +G+ + +N+LN + + G + G+ + + + Sbjct: 303 EAADAGDRVAQEILSEAGRFLGIGIGAMINLLNPAMVIIGGGTSRAGDYLIEPLRQA--- 359 Query: 356 NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 +R + +I +L LG L +E R Sbjct: 360 -ALERTLPALRERVKIVRTELGEDAGPLGGAALVIEELFR 398 >UniRef50_Q65CW6 Putative uncharacterized protein n=1 Tax=Bacillus licheniformis ATCC 14580 RepID=Q65CW6_BACLD Length = 390 Score = 409 bits (1052), Expect = e-112, Method: Composition-based stats. Identities = 89/401 (22%), Positives = 174/401 (43%), Gaps = 17/401 (4%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ Q ++ NK +IL + + +++ +A+ +I+ P VS+I++EL + V Sbjct: 1 MQRGT-FQLMKSVNKSIILNKIRTSEPISRAEIAKETKITPPTVSSIVKELIGQGLVKES 59 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 + G I + + ++ P ++EC + + L T + Sbjct: 60 TLGRSSGGRKPTMLHINTGAYYVIGIDAGPETVECVLTDLAGGILQRTSSLLKKPLTNER 119 Query: 121 LLSEIEKCWHRHRK---LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 + +++ + + + I + +A+HG VD TG+S+ P T + +K +LE Sbjct: 120 FMEVLKESVYAILGRADVEQEKIIGIGIAMHGVVDAETGMSRIAPILN-LTNIPIKDVLE 178 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 ++ + V V+ND +AL E W + +N+ G+G+ VIN ++Y G+ +G Sbjct: 179 QEFNLTVRVENDARAMALGESWFGGRDDAGSMAAVNIGRGVGAGIVINGKLYHGAEGIAG 238 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 ++GH I++ +G C+CG GCL+T+ S A+ ++ + LK S LT L Sbjct: 239 ELGHMIIDINGEKCECGNRGCLQTIVSGKAIAERGKKRLKESTDS-------LTAKDLFE 291 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 ++G + IG+ L NF++++N +I L G G L I Sbjct: 292 MAENGCQTCIELFQETGVIIGIGLTNFIHLVNPGKIVLGGGVMKGGRFILPAIRETIQQ- 350 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 + + T++ +L + G L + + Sbjct: 351 ---KALTAEARQTEVTITKLGDEATLYGAVSLLLAELFDPV 388 >UniRef50_B8CZI2 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZI2_HALOH Length = 391 Score = 404 bits (1040), Expect = e-111, Method: Composition-based stats. Identities = 83/394 (21%), Positives = 169/394 (42%), Gaps = 17/394 (4%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 N+ I++ N+ I +L++++ + LA S +SN ++ L + V+ + Sbjct: 6 GNSTFIKNLNQKRIFKLIHKEGPITRKELADNTDYSAGTISNHVKALIDQGFVIETEKGY 65 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 + G + P+ + + + V T ++ + N + + + + +S+ Sbjct: 66 SSGGRKPVYLTVNPDKGYIISVEVEVTRVKIVLFNLKIKVVAKTVFPINGPAQAKETISQ 125 Query: 125 I---EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 I + R++ PD + + +A+ G +D G+ + P W + V + E+K G Sbjct: 126 IFSEIEKILSEREIKPDKILGIGVAVPGLIDKEEGLLEFAPNLGW-SKVPIVKYFEDKYG 184 Query: 182 IRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 + V+++N+ A+ EK +D ++++ GIG + N ++YRG+ +G+ GH Sbjct: 185 VPVVLENEANAAAVGEKEFVYPDIKDMVYVSINEGIGCGLIFNGRLYRGAGGNAGEFGHI 244 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 I++ DG +C CG GC ET+AS + ++K+ + E + ++ G Sbjct: 245 IIDSDGPLCHCGNSGCWETLASENHIQKEYQELTGE---------ENVEKNEIYRKAIEG 295 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 E S V ++A+ IGL L N +N L+ I L G ++T+ + Sbjct: 296 EDRALSVVKQAAHNIGLGLANIVNSLSPRLIVLGGGIIEADTLIIDTVQSILKE----KC 351 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 S I F +L + G+ + Sbjct: 352 LLLSYDKVDIEFTRLKDLACLYGLASYVFNKSID 385 >UniRef50_C6D1T9 ROK family protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6D1T9_PAESJ Length = 387 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 80/403 (19%), Positives = 161/403 (39%), Gaps = 25/403 (6%) Query: 1 MR--ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVV 58 M+ + I+ N ++LE + +Q +++ ++ L ++ VSN++Q+L VV Sbjct: 1 MKVTTTGDLTLIKKINTSIVLEAVLKQAPLSRAQISELTGLNKATVSNLVQDLIDSDLVV 60 Query: 59 NIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP 118 I + G L + + + +++ I +A+ + E + + Sbjct: 61 EIGPGESSGGRKPVMLLFNGKAGYAVGIDLGVNYIRGVLADLEGNVIAERKR-SLKKHQL 119 Query: 119 QALLSEIEKCWHRHRK---LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 + L E+ +C P + + + + G VD G P W VE++ + Sbjct: 120 EFTLKELVQCIEELIGKAPASPYGIVGIGIGVPGIVD-DQGSILFAPNLEWRH-VELQQM 177 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYG 234 LEE+ + V +DN+ A E+ + ++V GIG+ ++N+++Y+G+ Sbjct: 178 LEEQFQLPVTIDNEANAGAQGEQKYGIGRGIAHQIYVSVGIGIGTGIILNKELYKGATGF 237 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQL 294 SG++GH + +G C CG GC E AS +AL +QA + L Sbjct: 238 SGELGHLSIEYNGKPCRCGNEGCWELYASENALLEQAAPLGFD------------SLEDL 285 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTG 354 + A ++G + + + +G + N +N+ N + + + R + Sbjct: 286 LDAAEAGNEEVRALFYKIGEYMGAGISNIVNVFNPDVVIIGNRMSRAKTWLEEAVQSSVT 345 Query: 355 FNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 R + +I F +L V G Y + +I Sbjct: 346 R----RTLPYHRERLRILFAELQDQSAVRGAAYYAISKFFTKI 384 >UniRef50_C8WTP1 ROK family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WTP1_ALIAD Length = 409 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 73/396 (18%), Positives = 136/396 (34%), Gaps = 19/396 (4%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + ++ NK ++L + ++S ++ ++ VS + EL + V+ + Sbjct: 14 KTADQALMKEINKSIVLNRIRFHSPISRSQISSETGLNKATVSALTDELIRDGLVLEVGQ 73 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 G L + + + + + + E + +L Sbjct: 74 GRSRVGRRPIMLLFNASAGSVIGVELGVEYVRVAITDFAARALSVREEPLPRNLGAEEVL 133 Query: 123 SEIEKCWHRHRKLWPDH---TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + + P+ I + + + G VD GV P W + +K ++E Sbjct: 134 ERLRASIAQALAEAPESRYGVIGIGVGVPGLVDFARGVVLRAPHIKWEN-IPLKAMMESW 192 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 G V+VDN+ AL EK + I+ GIG+ VI +++ RG+ +G+ Sbjct: 193 FGKPVLVDNEANAGALGEKLYGAATHVSSLVYISAGTGIGTGIVIGDELIRGADGVAGEF 252 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH ++ G C CG GC E AS AL E+L ++A + Sbjct: 253 GHMSIDLHGETCPCGNVGCWELYASERALVAAYAKLTG----------EELDFDGVLARF 302 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 ++ +P +G N +N LN + L R G + + + Sbjct: 303 RASDPAALQAFQTVGRYLGAGAVNLVNGLNPAMMILGNRLAEGGRMVTDAMQQAI----L 358 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 R S + L R +G L + Sbjct: 359 SRCLVSSYAKVVVQVSALGRDACAIGSAALVLHDFF 394 >UniRef50_B8D168 ROK family protein n=12 Tax=Clostridia RepID=B8D168_HALOH Length = 396 Score = 396 bits (1018), Expect = e-109, Method: Composition-based stats. Identities = 90/402 (22%), Positives = 176/402 (43%), Gaps = 14/402 (3%) Query: 1 MRA--CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVV 58 M+ ++ + + N+ +IL ++ R +++ +++ ++ P V+N++ +L E V+ Sbjct: 1 MKKVYPVSYKLQKGMNEKLILNIIRRDGPISRADISKKTNLTPPTVTNVINKLVEENLVL 60 Query: 59 NIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP 118 + G + PE + +V+ + + +A L + Y I+ Sbjct: 61 EDIMGESSGGRPPQLVRLNPEAFNIVVTHVSSNKLTGYLTDAYLKVSKKVVY-DIERLEK 119 Query: 119 QALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 Q +L + + K L + +HG V GVS P W V +K L++E Sbjct: 120 QKILDLMFEVIDELIKSASQEVPALGVVVHGPVKAREGVSVFAPNIGWRN-VPIKKLVQE 178 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 + V V+ND + L E + + + + + + YGIGS+ + + +I+RG +G+ Sbjct: 179 RFKKPVCVENDVRAMGLGEFYYGSGKGVDNLVFLKIGYGIGSAIIFDGKIFRGISDSAGE 238 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVST-----QLDPEKLTTA 292 GHT V+ G C+CG YGCLE ++S +A+ K LK+ +S + EK+T Sbjct: 239 FGHTTVDIGGPRCNCGNYGCLEALSSENAIVKAVVKDLKAGRMSLVRELCDGNLEKVTPD 298 Query: 293 QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQ 352 + A G+ S + +A +G+ + N +N +N I + G I Sbjct: 299 HVYRAADRGDELSLSVLQEAARYLGIGIANIINSINPKVIVIGGGIIKA----RLHIEEI 354 Query: 353 TGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + +R + ++ I F +L + G G + ++ L Sbjct: 355 INKSVEERALTNAYQSCDIVFSELGDIGTLKGAGNIVMDEIL 396 >UniRef50_B8CZW2 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8CZW2_HALOH Length = 383 Score = 394 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 164/388 (42%), Gaps = 14/388 (3%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGH 69 ++ N+ ILEL+ + +++ +A + ++ VSNI+++L V G Sbjct: 1 MKKINQQTILELINNKGPISRAEIAEITGLTPATVSNIVKDLLKMDLVRETRQGESRGGR 60 Query: 70 SSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCW 129 + PEG + + L I+ + N + Q+D+ P+ L + Sbjct: 61 KPILLEVNPEGAYVIGLEWGIGEIKAVLLNLNKKVIKTIK-KQVDSFKPEWFLKTTVTIF 119 Query: 130 HRHRK--LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVD 187 PD L + IHG VDP GVS P W +++ LL+++L I +M+D Sbjct: 120 EEVTGYVENPDKVFGLGIGIHGLVDPDEGVSLYAPHFGWEN-IKIGKLLKQELQIPIMLD 178 Query: 188 NDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDG 247 ND M+ALAEKW+ +F IN GIGS+ VI ++ G +G+G+ GH + DG Sbjct: 179 NDVRMMALAEKWEGR---DNFIFINTGPGIGSAIVIKGELLYGRDFGAGEFGHMTIVEDG 235 Query: 248 VVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITS 307 +C CG GC+E + S++ L ++ L + E LI + + S Sbjct: 236 ALCSCGNRGCIEALVSVNNLVREYNDSLPEHISFHDIKRE---WNLLIDLAREEKSRAYS 292 Query: 308 WVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVK 367 ++++ +G + N +N+LN + + G + I Q + + Sbjct: 293 IIEKAGVYLGKGIGNVVNLLNPEAVVIGGDFLLARDLIFPVIKEQV----LETALKVPSR 348 Query: 368 ATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 +I +G G ++ + Sbjct: 349 DLEITGTAFGEKVGAIGAGTRVLQEIFK 376 >UniRef50_C6IY97 ROK family protein n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6IY97_9BACL Length = 399 Score = 390 bits (1004), Expect = e-107, Method: Composition-based stats. Identities = 80/400 (20%), Positives = 165/400 (41%), Gaps = 20/400 (5%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ + Q I+ NK ++L+ + +++ +++ ++ ++ VS+++ EL V I Sbjct: 1 MKITGDQQLIKKMNKTIVLDTIRQRQPLSRADISAAIGLNKATVSSLVSELIDSHLVTEI 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 + G L + + +++ + + + E + +P+ Sbjct: 61 GPGESSGGRKPTLLLFNRSAGYAIGIDIRVNDLLAVLVDLEGHVLQEKLVP-LSDFSPEH 119 Query: 121 LLSEIEKCWH---RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 +L +I + P + + + + G VD + + P W VE+ L Sbjct: 120 VLEQIRQTIRQFKEQLPESPYGIVGIGIGVPGLVDDKS-RVISAPNLDW-NKVELYEPLA 177 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 + G + +DN+ A+ EK +E ++ +++ GIGS ++ ++YRG+ SG Sbjct: 178 SEFGANLHIDNEANAGAIGEKLFGAGREAQNLIYLSIGIGIGSGIIVGGELYRGTSNFSG 237 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 ++GH + +G +C CG GC ET+AS AL +A + ++I Sbjct: 238 EVGHMTIAENGPLCRCGNRGCWETLASEKALLDRAAKLWG---------DKHPDLEEMIQ 288 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 SG+ ++ +G+ L N +NILN I + R G+ + ++R Sbjct: 289 LAHSGDSRAIELLNEIGAQLGVGLANLVNILNPELIVIGNRLSLAGDLIQDAMLRTIE-- 346 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 +R K + + F L LG + + A L + Sbjct: 347 --NRSLSYHRKKSGVAFANLGIRSTALGAASMPITAFLSE 384 >UniRef50_Q2RLD7 ROK n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RLD7_MOOTA Length = 410 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 83/401 (20%), Positives = 171/401 (42%), Gaps = 15/401 (3%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 N Q ++ N+ IL ++ + ++ LA+L ++ A++ I+++L + V+ Sbjct: 6 GNLQLVKKLNRISILNIIRKHNTISRQQLAKLTGLTPAAITGIVRDLVASGYVIEKGLGK 65 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 G P+ + L +T S + N P +Y ID PQ LS Sbjct: 66 SNGGRRPVKLQFNPDSGYVLGAEITRNSTTLGMVNLDAKPLILKQY-NIDMTDPQQGLSR 124 Query: 125 IEKCWHR---HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAP-WTTPVEVKYLLEEKL 180 + + + + + + +A G VD T V + P + ++ L+E Sbjct: 125 LADEVTKMIIESGIESKNILGMGVAYPGLVDISTRVVKRSPNLGKKWRDIPIENWLQEMT 184 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 GI++ V+N+ A+AE +E ++ IN+ GI + ++N + G +G+IG Sbjct: 185 GIKIFVENNSNAAAMAEYCFGRGKETKNMAYINLGEGISAGIILNGMLAYGFRGYTGEIG 244 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWL-----KSQPVSTQLDPEKLTTAQL 294 H +++ DG +C+CG GCLE++ ++ AL ++A L K + L+ ++ + Sbjct: 245 HLVIDEDGPLCNCGNNGCLESLCAVPALVRKANNELSLYNQKDPLKAIWLEKGEVKIEDI 304 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTG 354 +A + + + ++ IG ++ +N+ N I++ G G + L+ +I Sbjct: 305 MANANNVGSYAQKLIRQAGWYIGKAIAAIINVFNPEAIFIGGILAEAGNSLLDPLIESVQ 364 Query: 355 FNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + F V+ +I + + G + + A Sbjct: 365 KHAF----PELVREVRIELSSMRKDTGFYGACAIAIRALFE 401 >UniRef50_Q5WKJ0 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WKJ0_BACSK Length = 391 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 70/397 (17%), Positives = 148/397 (37%), Gaps = 18/397 (4%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 I+++ ++ NK + L+ R +++ +A+ + ++ VS ++ +L + V I Sbjct: 2 ITIDHETMKDMNKSTVFRLIQRHAPISRADIAKRSGLNKATVSALVAQLIENQFVYEIGT 61 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 + G + +++ + + + + E L Sbjct: 62 GDSSGGRKPVLLYCNDRASHAISVDIGVNGLLGIITDLSGKTIAKREMALTSKEFNIVLA 121 Query: 123 --SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 I + P + ++ G VD G P W V++K LE Sbjct: 122 NTEAIIEQLIHEAPPSPYGICGITASVPGIVDSK-GNILLAPNLGWEN-VDIKTALEHTF 179 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQERDFC-VINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 + V+V N+ AL EK + I+V GIG+ +I+ +++ G+ +G+ G Sbjct: 180 KLPVVVINEANAGALGEKQYGVGKPYSAISYISVSIGIGTGQIIDGKLFTGANGFAGEFG 239 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 H ++ G C CG GC E +S AL + A + ++ ++ +++AA + Sbjct: 240 HMSIDRHGKQCRCGNQGCWELYSSEKALLEIA---------AINMNRRSISFEEVLAAAE 290 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 +G +++G+ L + ++ +N I + R I + Sbjct: 291 TGNQAALDAFATVGHSLGIGLVSMIHSMNPEAIIIGNRFAKLKPYIQIPIEETLAKHL-- 348 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 KA ++ F +L + +LG L + Sbjct: 349 --PSYYQKAVKLLFSELGQEAPLLGGSLLATSQFFNR 383 >UniRef50_B8E382 ROK family protein n=2 Tax=Dictyoglomus RepID=B8E382_DICTD Length = 400 Score = 387 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 72/400 (18%), Positives = 162/400 (40%), Gaps = 16/400 (4%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ +N + +R N ++L+ + R ++ ++++ ++S AVS+I++ L + V Sbjct: 1 MK-PVNIKSMRMTNVSLVLDTIRRMGPISRYDISKITKLSPSAVSSIVENLINVGIVKET 59 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 + G + G + + + + I + + + ++ Sbjct: 60 PAKVTKVGRRPIELTLNETGYYPIGIEIEKDKITGILMALSGKILKS-KVINLNTTDVNE 118 Query: 121 LLSEIEKCWHRHRK-LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 +L + + + + + I + +A+ G ++ GV P W + +K L + Sbjct: 119 VLGSVVNVYRSLIEDVNKEEIIGVGVAVPGTINRKEGVCIFSPNLGWRN-INIKEYLGQY 177 Query: 180 L-GIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 + + +++ + E W + + V G+ + FV++ ++YRG +G+ Sbjct: 178 IKDYPLFIEHIIKAVTYGEMWYGAGIGKDNIICVRVGSGVSAGFVLDGKLYRGPNDRAGE 237 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVS---TQLDPEKLTTAQL 294 GHT++ +G C CG YGCLET S L ++ ++ + + + ++ Sbjct: 238 FGHTVIERNGKKCKCGSYGCLETYVSTQVLYEKVFEGIQKNAYTKVNIENKTKDEILDEI 297 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTG 354 I A +SG+ +I + + +G+ + N +N+ N I + G GE L + R Sbjct: 298 IEAGKSGDRFILNIFEEMGTYLGIGIANLINLFNPEIIIIAGGLSKAGELLLEPVRRIVN 357 Query: 355 FNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + F +I +L +G +E L Sbjct: 358 LHAFPPI-------PEIMVTKLGALTGPIGAASEVIEETL 390 >UniRef50_UPI000178870E ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178870E Length = 413 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 91/403 (22%), Positives = 173/403 (42%), Gaps = 13/403 (3%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID-D 62 NN+ +++ N+ I+ LL K+ +A ++ AV+N+ EL ++ + Sbjct: 6 GKNNRHVKNLNRIGIIALLRDYGSLTKAEIAAKMNLTFTAVNNLTDELMKDRLIAEAGFY 65 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 + +RG + +T+ ++++ +S+ V N + D +++ Sbjct: 66 DESSRGRKPKLLSLNSGDIYTVGVHISASSVRAAVINLQGKAMMDKYSPFEDNANRGSVV 125 Query: 123 SEIEKCWHRHRKLW--PDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 + I I + + G +DPV G + P P V +K L+EE Sbjct: 126 NVIISTIQAVLDESGLKSRIIGIGVGAPGPLDPVQGKILSPPNLPGLHQVRLKGLIEENT 185 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 + ++ D ++AL E W N + ++ D GIGS + N++IY+G +G+G+IG Sbjct: 186 ELPTQIEKDANVMALGELWYGNGRHFNHLVYVDADIGIGSGLIFNQKIYQGCPFGAGEIG 245 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQ-----LDPEKLTTAQL 294 H ++ DG C+CG GCLE +AS A+ ++ L+ S+ + L + Sbjct: 246 HCTIDIDGPRCNCGNTGCLEAIASGMAIVRRVGEELRRGAGSSLQSSFDGNDHGLDITDV 305 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTG 354 I A G+P + ++ SA +G+SL N +N+L I + G ++ + Sbjct: 306 ITAGVDGDPLAANMLNESARYVGISLANVINLLTPETIIIGGVLANRYPDYFTYVRET-- 363 Query: 355 FNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 ++R + +L V+G G + E L +I Sbjct: 364 --SYNRSLSSFHDKIMLQPSELGEYAGVIGAGTIVFEKYLNEI 404 >UniRef50_Q65DK2 Transcriptional regulator XylR n=2 Tax=Bacillus licheniformis RepID=Q65DK2_BACLD Length = 387 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 74/396 (18%), Positives = 145/396 (36%), Gaps = 20/396 (5%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 + ++ NK +I E + +++ L+ + ++ VS+ + L + + Sbjct: 3 TADQALVKKMNKALIFEQIIENGPVSRAKLSEITGLNKATVSSQVSSLLQKDIIYETGPG 62 Query: 64 SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAP--TPQAL 121 + G + + + ++V I + + +FE + + Sbjct: 63 ESSGGRRPVMLKFNRKAGYAVGVDVGTNYIIVALTDLEGHLIEQFERTLDEEDIQATEEA 122 Query: 122 LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 L E+ P + + + G VD P P + +K LEE+ G Sbjct: 123 LIELTGLAVDKIPPSPFGLTGIGVCVPGLVDNER-HVVFTPNKPI-HLIPIKEKLEERFG 180 Query: 182 IRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + ++++N+ A+ EK Q ++++ GIG ++N +++RG SG+ GH Sbjct: 181 VPILIENEANAGAVGEKEYGEGGQLEHAVFVSINTGIGLGILMNGKLFRGVQGFSGEAGH 240 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 ++ DG +C CG GC E AS A+ +Q + Sbjct: 241 MSIHFDGPLCRCGNRGCWELYASEKAVFSHYAANSGAQL-----------YETVKELADR 289 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 G+P + +R IG+ L N L LN + I L + ++ I + R Sbjct: 290 GDPGMMETFERFGFHIGIGLLNILKTLNPDTIILRNTIVESYPSIVDAIKKTIA----SR 345 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 ++ + L R LG+ L E L + Sbjct: 346 SAAEALSNYHLKISTLGRTASALGMSSLVTERFLER 381 >UniRef50_A1HM15 ROK family protein n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HM15_9FIRM Length = 412 Score = 383 bits (985), Expect = e-105, Method: Composition-based stats. Identities = 90/401 (22%), Positives = 165/401 (41%), Gaps = 16/401 (3%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 N++ ++ N+ +L L+ + LA++ ++ PA++ I++EL V Sbjct: 5 GANSKYVKKRNRITVLNLIKEHGPIGRQELAQITGLTPPAITGIIRELLELGLVHEDGYG 64 Query: 64 SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLS 123 G + + + + VT VA+ P Y + P A L+ Sbjct: 65 ESRGGRRPVKLTFNSKAGYVIGVEVTRGETTVGVADLMNDPTDIARYPLDMSE-PAAGLA 123 Query: 124 EIEKCWHRHR---KLWPDHTINLALAIHGQVDPVTGVSQTMPQA-PWTTPVEVKYLLEEK 179 + + R + + +A G V TG Q P ++ LE+ Sbjct: 124 SLAELLRRIMNDEGKQGRSFVGVGIAFPGLVQAKTGTVQRSVNLGPAWRSYPLQEKLEDV 183 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 LG+ V ++N+ LAE+W RD +N+ GI + +++++I +G +G+I Sbjct: 184 LGLPVFIENNSNACVLAERWFGGGVCCRDLVYVNLGEGISAGVILDDRIVQGFQGYAGEI 243 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPE-----KLTTAQ 293 GH +++ G C+CG +GCLE + S+ AL KQAR L L + A Sbjct: 244 GHIVIDESGPQCNCGNHGCLEALCSVPALIKQARRDLPGLADGDPLKARWQSSGDIELAD 303 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT 353 L+A Q G + + + R+ + IG ++ +N+ N ++L G+ + + Sbjct: 304 LLAVAQPG-TYANALLSRAVHWIGRAVAAVINLYNPEAVFLGGQLAGAMARFEPILRDAV 362 Query: 354 GFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + F AT+I F L V+G L ++ L Sbjct: 363 AAHAF----PEIASATRIAFSALGEYPGVIGACALALKGLL 399 >UniRef50_C5D498 ROK family protein n=8 Tax=Geobacillus RepID=C5D498_GEOSW Length = 397 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 70/398 (17%), Positives = 152/398 (38%), Gaps = 16/398 (4%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M N ++ NK ++L+L+ + +++ +A++ ++ VS ++ EL SE V Sbjct: 1 MVRTGNIGLVKKINKQIVLKLIREKNNISRAEIAKITGLNKATVSALVDELISEHFVSES 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 T G + + + I + + E + Sbjct: 61 GIGVSTGGRRPLMLRFNEAAGSLIGIELGVNYIYAVLTDLNAEIIWEKMCPFRANEKQET 120 Query: 121 LLSEIEKCWHRHRKLW---PDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 ++ ++ H + P + + + + G VD G+ P W V + +L+ Sbjct: 121 IIEKMIAMIHEAIRQAPTTPYGIMGIGIGVPGIVDAEEGLVVFAPNLHW-DHVSLSSILQ 179 Query: 178 EKL-GIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 ++ ++++N+ + AL EKW +E +F ++ GIG+ +I+ Q+YRG + Sbjct: 180 KQWPNYPIIIENEAKLAALGEKWFGAGKEFANFVYVSAGIGIGAGVIIHNQLYRGIDGIA 239 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLI 295 G+IGH +++ G C CG GC E AS ++++ E + ++ Sbjct: 240 GEIGHHVIDVHGFRCSCGNNGCWEMYASEKYIQRRLEQ------EHYHSMLEGFSVEKVR 293 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF 355 A +SG+ + + + +G+ + + + N + + G+ L + Sbjct: 294 ALAESGDKQMAQILAEVGHYLGIGILHIIYAYNPEAVIVGSTIGKAGKWVLEPAREEVEK 353 Query: 356 NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 ++ I QL +G +E Sbjct: 354 RILVKNGNGPF----IIPSQLLEKSCAIGAVASVLEKV 387 >UniRef50_B8I1T3 ROK family protein n=2 Tax=Clostridium RepID=B8I1T3_CLOCE Length = 399 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 83/398 (20%), Positives = 170/398 (42%), Gaps = 9/398 (2%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M NN+ ++ N+ +LEL+ K+ +K+ LA++ +S A I+ L + + Sbjct: 3 MGKAGNNKLLKEINETSLLELIRINKQVSKAGLAQITGLSPTACGTIVTNLLDKGYIREA 62 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 + G + + P +++ +++ I + + + + A Sbjct: 63 GIGTSKGGRRPILYELTPGSYFSIGVDIDIDYIRFILMDITGQVEFKDRISCDFARAASE 122 Query: 121 LLSEIEKCWHRHRKLW---PDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 + +E+ K+ D + + +++ G +D +T P W V ++++++ Sbjct: 123 SIRLMEEKISEIIKIHNIEHDRLLGVGVSVPGMIDNLTHEIIFAPNLGW-ERVNLEHMMD 181 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 + VDN+ + AL E W ERDF IN+ GIGSS +YRG +G Sbjct: 182 RIGDFPIYVDNEAMCSALCENWIGCCMDERDFVCINMKSGIGSSIFAAGNLYRGCCGSAG 241 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 +IGH V+ +G C CG YGCLE + S ++ ++A+ ++ ++ D E +T ++ Sbjct: 242 EIGHITVDQNGPRCACGNYGCLEALVSARSMVEKAQKLVRQGLITDFEDIEAITVDEIFR 301 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 + G + +A +GL++ N +N +N ++I L F E+ ++ + Sbjct: 302 LAREGNESARVILVEAAGYLGLAIANLINTVNPSKIVLGKELAKFSEDIVDHLKSIAS-- 359 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + Q+ ++ LG + V+ Sbjct: 360 --AKALKYPASRVQVVVSKIGEDTSALGAAIIPVKKLF 395 >UniRef50_Q1CY52 Transcriptional regulator, ROK family n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1CY52_MYXXD Length = 408 Score = 379 bits (975), Expect = e-104, Method: Composition-based stats. Identities = 86/398 (21%), Positives = 163/398 (40%), Gaps = 14/398 (3%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 ++ +R N ++L +++R+++ +++ +AR ++S VS I+ +LE V +I Sbjct: 8 TTVDAAGMRAQNSSLLLNMIWRERQISRAEIARRTELSPSTVSAIVADLERSGLVRSIGA 67 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 G + + + + T + + + + P+ L Sbjct: 68 GVSRGGRRPTLIGFCDDAFSLIGVEMGATHVTAALTDLRGRVRAYRHASHAVREDPKGTL 127 Query: 123 SEIEKCWHRHRK---LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 ++ + + + +A+ V P + P +V+ L Sbjct: 128 QKVRELVQEVLDAERVPRRSVAGMGIAVPSPVHPSAPGKLSPLLVPAWRDYDVQESLRSA 187 Query: 180 LGIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 G+ V VDND + AL+E + D I + GIGS +I+ +YRG+ +G+I Sbjct: 188 FGLPVFVDNDANLGALSECYWGAGVNGEDLAYIKLATGIGSGHIIHGDVYRGAGGTAGEI 247 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 H V+ G C CG GCL T+ +AL ++AR + D LT +L+ Sbjct: 248 SHMAVDSSGPQCVCGLRGCLVTLIGSAALLERARELMGR------KDKRALTVRELVEGA 301 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 ++GEP +D + +G+++ LN+LN + L G + G+ L+ + Sbjct: 302 RAGEPAARQVIDGLGHYLGIAVAGLLNLLNPAIVVLGGEISSVGDLLLDPLRASVRK--- 358 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 R S+ T+I L +G L ++A LR Sbjct: 359 -RALSTSMAETRIVTSALGDRAIAVGAATLVLQAALRD 395 >UniRef50_C0ZA78 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZA78_BREBN Length = 401 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 87/402 (21%), Positives = 161/402 (40%), Gaps = 13/402 (3%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 MR + + I+ N+ +IL+ + + ++S +A+ IS V++ + EL + V Sbjct: 1 MRRTGDLKLIQELNRFIILDTIRQFGPISRSDIAKKQGISPTTVTSAVNELIRDGMVAED 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 G P+G + + +++T T+I N + K + Y Sbjct: 61 GTGESKGGRKPIMVRFCPDGKFLIGVSITNTAITIAEMNLEAATKQKKIYPVKAGLVSDL 120 Query: 121 LLSEIEKCWHRHRKLWPD--HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 ++ + + D + +++ G VD +GV + + V +K + EE Sbjct: 121 IIQYVLDSIGDFLQSVDDVSRCLGISIIAPGIVDAASGVIRFNSKLRLHD-VPLKDMAEE 179 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 + G+ +DND +ALAEK + + V G+GS V+N I+RGS G+G+ Sbjct: 180 RFGLNTWLDNDANAIALAEKNFGGGLNADNLLFVTVGEGVGSGLVVNGSIFRGSRGGAGE 239 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVS-----TQLDPEKLTTA 292 GHT V+ G+ CDCG GCLE + A+ + + D ++T Sbjct: 240 FGHTTVDRSGMRCDCGNVGCLENYVAWPAIYSGILSAVTRGKETLVMDLADGDMTRITFD 299 Query: 293 QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQ 352 A G+ VD A+ + + + N +N+ N + I L G + I +Q Sbjct: 300 VFRQALHQGDQVCQDIVDEIASYMSIGIVNLVNLFNPSLIILGGEMIRDNQVLFERIQKQ 359 Query: 353 TGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + G V+ + L +V + ++ Sbjct: 360 V----MAQAMGTMVEGLEFRPTVLGADFEVKAAAAVLLQDVF 397 >UniRef50_UPI0001C3682C ROK family protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C3682C Length = 404 Score = 377 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 83/402 (20%), Positives = 164/402 (40%), Gaps = 11/402 (2%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M N Q+++ N+ +L + R A K+ LA + ++ A+ IL EL+ + + Sbjct: 1 MADQNNQVQLKNFNRRTVLGYIRRNGTATKAGLASVTGLTFMAIKKILAELQELNLIRDG 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDA----P 116 ES G + +++I +T+ +++ + N Y Sbjct: 61 QMESGGMGRKAVSYVINENYRYTIGIHINKFITGIALLNLRGQILAIERYSMDKEFENQN 120 Query: 117 TPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 +L+E + + + + + + G +D +GV T P P + +K L Sbjct: 121 DFVTMLAEAVELVIEKSGVKREDILGIGVGAPGPLDCESGVILTPPNMPMLDYLPLKETL 180 Query: 177 EEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 E + G V ++ D ++A AE W N+++ + + VD GIGS +I+ ++ G+ + Sbjct: 181 EGRTGFPVFLNKDTNVIAFAEYWYRNNRDCSNLAYVEVDMGIGSGLIIDGKLNVGANCIA 240 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQ-LDPEKLTTAQL 294 G+ GH ++ +G +C+CG GCLE ++S A+ + L++Q LT + Sbjct: 241 GEFGHITIDINGPLCNCGNRGCLEAMSSGIAVLRMLGEQLENQKDHPLYHKRNALTIEDV 300 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTG 354 + S ++RSA +G+++ N +N + I L G + N + Sbjct: 301 FEMTDKKDLLTISILNRSAFYVGVAVSNLINTFDPEMIILGGILIQKYPMYFNIVQDVAN 360 Query: 355 FNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 + + L V+G G + + Q Sbjct: 361 QRKVKGAKENYMA-----VSVLGENAGVIGAGEIVTDHFFNQ 397 >UniRef50_Q8ELU2 Transcriptional repressor of the xylose operon n=3 Tax=Bacillaceae RepID=Q8ELU2_OCEIH Length = 400 Score = 377 bits (969), Expect = e-103, Method: Composition-based stats. Identities = 72/417 (17%), Positives = 152/417 (36%), Gaps = 51/417 (12%) Query: 1 MR--ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVV 58 M+ N ++ NK ++ + + +++ +A+ ++ VS+++ EL +E+ + Sbjct: 1 MKINRTWNQYVVKQENKSLVFNTIRQNSPISRADIAQQLGLNKSTVSSLVSELINEELIG 60 Query: 59 NIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP 118 + + G +++ +++ I + + + E E + D T Sbjct: 61 EVGPGESSGGRRPVMLFFNNTAGYSIGIDLGVNYILGVLTDLQGNIL-EQEQVTFDNLTY 119 Query: 119 QALLSEIEKCWHRH---RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 + +L + + + P I + +A+ G V+ P W + +K Sbjct: 120 EEILVHLNEVIQKLITMTSKSPYGVIGIGVAVPGIVNKEE-KILLAPNLNWRN-ISLKEE 177 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQER-----------------DFCVINVDYGIG 218 LE + I V+++N+ A E +E Sbjct: 178 LENQFNIPVIIENEANAGAYGEVQFGIGKENKEIVYVSVGVGIGVGLV------------ 225 Query: 219 SSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQ 278 +N Q+Y+G+ SG++GH ++ G C CG GC E AS AL + A+ Sbjct: 226 ----LNNQLYKGNNGFSGEMGHMTIDAHGAKCSCGSEGCWELYASEKALLQLAKR----- 276 Query: 279 PVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRS 338 DP L +I ++ + + + + + + N +N N Q+ + R Sbjct: 277 NKIYTTDPYDL-LDHMIQLAKNNDSVALEAFNEISKYLAIGINNIINSFNPEQVIIGNRM 335 Query: 339 CAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 A + ++ ++ S K +I F L+ LG+ E L+ Sbjct: 336 SAAKKWIEKPLLDSIN----NQSLWFSQKDLKIDFSSLNTHSNALGMAAFSSERFLK 388 >UniRef50_D1CIH3 ROK family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CIH3_THET1 Length = 418 Score = 376 bits (967), Expect = e-103, Method: Composition-based stats. Identities = 91/401 (22%), Positives = 163/401 (40%), Gaps = 11/401 (2%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 + + +R N ++L +L ++++LA + ++ VS+++ EL V + Sbjct: 5 KHTGDQALVRELNLSIVLNVLREHSPLSRASLAAITGLNRATVSSLINELTRAGLVWEVG 64 Query: 62 DESQT-RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 E+ G + P + + V I +A+ + D +P+ Sbjct: 65 IEATDDVGRPGRLLELDPHAGRIIGMEVGVDFIALAIADFSSQIIWKRWVELTDGKSPEE 124 Query: 121 LLSEIEKCWHR---HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 +L + L + + G VD G P W V V+ + E Sbjct: 125 VLGLAADLIQEGVELTDKEYGQVLGLGVGVPGLVDVPRGHLLFAPNLGWRD-VPVRSMFE 183 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSG 236 E+ V V+N+ M AL E + ++ + I+ G+G V+ QI RG++ SG Sbjct: 184 ERFPFTVYVENEANMAALGESYFGVARGYNCVLYISAGVGVGGGIVLGGQIMRGAMGFSG 243 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWL-KSQPVSTQLDPEKLTTAQLI 295 ++GH + DG +C CG GC ET+AS SAL ++ L ++ + + LT ++ Sbjct: 244 EVGHMTMVEDGPICGCGNRGCWETLASESALVRRMLEALRRAGETPSWARDDHLTVPTVL 303 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF 355 A ++G+ ++ A +GL + N +N+LN + L G G+ L TI Sbjct: 304 EAARAGDRLARGVLNEVARDVGLGIANLVNVLNPEIVVLGGMLSMGGDLMLPTIRETLE- 362 Query: 356 NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 R V+ ++ L R VLG + L Q Sbjct: 363 ---HRGLRWLVQPLRLELAALGRESCVLGGIATVYDRVLSQ 400 >UniRef50_A8FE34 Transcriptional regulator n=5 Tax=Bacillus RepID=A8FE34_BACP2 Length = 386 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 75/396 (18%), Positives = 152/396 (38%), Gaps = 22/396 (5%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 + ++ N+ ++L+ + + +++ L+ ++ VS+ + L E+ V I Sbjct: 4 ADQNFVKKINQKLLLKEILQHAPISRAKLSERTGLNKSTVSSQVSTLMKEQLVYEIGQGE 63 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 + G + ++ ++V + + + S E E + + + P + Sbjct: 64 SSGGRRPVLLMFNKRAGCSIGIDVGVDYVNGILTDLEGSILHE-EQINLPSSAPDVTIRI 122 Query: 125 IEKCWHRHR---KLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + + + P I + L I G VD + P + W V++K L++ Sbjct: 123 LTELIQQLMSQIPSSPYGLIGIGLCIPGLVDADQQIV-FTPHSKWKN-VDLKKALQDAFQ 180 Query: 182 IRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + V ++N+ A EK ++ ++ GIG +IN +YRG+ SG++GH Sbjct: 181 VPVFIENEANAGAYGEKIFGAAKHYDHLIYASIGTGIGIGIIINHHLYRGAYGFSGEMGH 240 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 ++ +G C CG GC E AS AL + S Q + + ++ + Sbjct: 241 MTIDFNGPTCSCGNRGCWELYASEKALFQ-----------SLQTNEKPISHQDVEQLATL 289 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 + + + +G+ L N L+ N I L + L I + R Sbjct: 290 NDMKTLNALRNFGFYLGVGLTNVLHTFNPQAIILRNKVIESQPTVLRVIQEEVS----SR 345 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 + ++ L VLG+ L +EA L+ Sbjct: 346 IDTQFSSHVELLPSSLGHNAPVLGMTSLVIEAFLQD 381 >UniRef50_Q724N5 Xylose repressor protein n=19 Tax=Listeria RepID=Q724N5_LISMF Length = 404 Score = 372 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 81/396 (20%), Positives = 152/396 (38%), Gaps = 11/396 (2%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 N I+ N+ +L L+ + ++ +A+ + ++ IL +L+ E ++ + Sbjct: 5 RKGNKDLIKDINRYTVLNLIREKGEITRTEIAKKCDFGMSTLTYILDDLQQEGIILEGAE 64 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 S T G + + + + + V + + + P+ + Sbjct: 65 TSSTGGRRAKLVRFNKDYGFVVSVKVEEEQLLFALTDLNAEIMENTSIPFSSEKKPEEAI 124 Query: 123 SEIEKCWHRH-RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL- 180 I K + +H + + +AI G V+ G W V ++ +L Sbjct: 125 ELIAKNVKKMCENRDMNHLLGVGIAISGLVNRRKGTVIRSTMLGWEN-VALEAMLHAYFP 183 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 I V VD + LAE W + +F ++V G+G S VIN QIY G+ G+G+ G Sbjct: 184 DIPVYVDKNINCYTLAELWLGEGKQSNNFATVSVGAGLGLSVVINRQIYYGAQGGAGEFG 243 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 HT + P G C CG+ GCLE AS + + ++ P S D ++ + + Sbjct: 244 HTTIQPGGYKCHCGQKGCLEMYASEFYFRNRGEELKEAYPTSELKDFH---FDKVAKSAR 300 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 +G+ T + + +G + N +N N ++ + G + +L I N F Sbjct: 301 AGDEMATELMGKMGEYLGYGIRNIINTFNPEKVIIVGEGLHHRDLFLTKIDEIASQNFFS 360 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 T+I L + G L + + Sbjct: 361 GAGF----ETEITTTSLEDPAWLQGAALLVIHQLFQ 392 >UniRef50_B1YIH1 ROK family protein n=1 Tax=Exiguobacterium sibiricum 255-15 RepID=B1YIH1_EXIS2 Length = 386 Score = 371 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 82/397 (20%), Positives = 167/397 (42%), Gaps = 19/397 (4%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 N++ +R +N+ ++L L+ + ++ LA+ +++ P VSNI+ EL +++ V+ + Sbjct: 6 PRNSKWMRSYNRALVLRLIRMHQPISRVELAQQTKLTKPTVSNIVGELIADQLVMERELG 65 Query: 64 SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLS 123 G + + + + ++ T +A+ + E E + + L+ Sbjct: 66 VSNGGRKPILLELVAKEQYVIGIDATSHRFIGVIADLSGNTIHEVETMGKFDTN-EELME 124 Query: 124 EIEKCWHRHRKLWP--DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + + + + +++HG V+P TGV P+ V +K LE++ Sbjct: 125 AVVQLCQQLIDATDQVGTIHGIGISVHGMVNPETGVILFAPRFHLHD-VALKEHLEQRFA 183 Query: 182 IRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 V ++ND LA E D F + GIG ++V++ ++ G + +G++GH Sbjct: 184 YPVFIENDVRALASFELLFGEGVGVDQFFYLYAGEGIGGAYVLDGKLIDGENHITGEVGH 243 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 ++ DG +C CG GCLE +A AL + +DP+ T +L Sbjct: 244 MRLDLDGPICSCGNRGCLEALAGEKALLRDFEA----------VDPQVKTLTELRRRLTD 293 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 +P T+ R+ IG+ + N ++++N +I L G + ++ I + Sbjct: 294 QDPHATAAYHRAGEYIGIGVLNTIHLINPKRILLGGPMFELAPSIVDQIKERVEHTALT- 352 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 + + T + S Q L L + + I Sbjct: 353 ---TASRETDVKMVPWSEKQGALSAAALATNSIFQTI 386 >UniRef50_C5ETA5 ROK domain containing protein n=2 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ETA5_9FIRM Length = 406 Score = 370 bits (951), Expect = e-101, Method: Composition-based stats. Identities = 86/377 (22%), Positives = 157/377 (41%), Gaps = 14/377 (3%) Query: 12 HHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSS 71 N+ +++++ Q NK+ +AR +SIP V I E E + G Sbjct: 3 QLNRKSVIDIIRTQSPINKAQIARQTGLSIPTVMKITDEFERNHLIRVNGKGESNGGKRP 62 Query: 72 GTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWH- 130 I P+ + + ++V + I+ + + + Q L+ + H Sbjct: 63 ELLEIIPDAYYIIGVDVGRSRIKAIIMDLSGKLIVKESIKTGRTVPSQQLIERLIYLIHQ 122 Query: 131 --RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDN 188 + + + L + + G +D G P W VE+ +E+ +++N Sbjct: 123 VVQESNISVSQFLGLGIGMPGLLDTENGTVLFSPDFHWEN-VELVKPIEDHFPFYTILEN 181 Query: 189 DCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDG 247 +A+ E W E F +N+ +GIGS+ V N + YRGS SG+IGH + DG Sbjct: 182 SNRAMAMGEHWFGAGVESSYFICLNLGHGIGSAIVQNGEFYRGSCGSSGEIGHITLEKDG 241 Query: 248 VVCDCGRYGCLETVASLSALKKQARVWLKSQP-----VSTQLDPEKLTTAQLIAAWQSGE 302 +C CG GCLE +AS +A+ QAR ++ Q + E + ++ A + G+ Sbjct: 242 PLCSCGNRGCLEALASANAMAGQARELVRQGKGQRILELAQGNEENIDAKEIFDAAKEGD 301 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDE 362 VD++ IG+ L N++N+L+ + + L G G+ + + R R Sbjct: 302 AAAALIVDKAIEYIGIGLANYINLLDPDMLILAGGVTGAGDYLITRLKRVIK----ARQM 357 Query: 363 GPSVKATQIGFGQLSRA 379 + + +I +L Sbjct: 358 KFAGRKVKIRISKLGND 374 >UniRef50_C6D7F4 ROK family protein n=2 Tax=Paenibacillus sp. JDR-2 RepID=C6D7F4_PAESJ Length = 396 Score = 369 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 74/398 (18%), Positives = 152/398 (38%), Gaps = 19/398 (4%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 + N + ++ N+ +++ L+ R++ +++ L + + ++ ++NI+ EL S VV Sbjct: 7 KRGTNLEDVQEMNRSLVIRLMRRREVCSRAELTQDSGLNQSTITNIINELISWGIVVETG 66 Query: 62 DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL 121 +G S + E + + + SI + + S + A Sbjct: 67 VIEGKKGRRSIGIKLNCEPYKIIGIRLARKSITVALYDLGGSEYKRQQIPINMADGSTNA 126 Query: 122 LSEIEKCWHRHRKLWP-DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 + +++ + + I + + G + G M P + ++ L ++ Sbjct: 127 FNRMKELIRDMMQSNAVGNVIAIGVVTPGPLLRDEGRIGLMTYFPGWEKINIQEELMQEF 186 Query: 181 GIRVMVDNDCVMLALAEKWQNNS--QERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 + V +++D ALA W ++ + G+G+ VI +++RGSL +G+I Sbjct: 187 ELPVYMEHDAKAGALAHWWFGTPLQEQGVMIYVAAGQGVGAGIVIEGKVFRGSLGMAGEI 246 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH ++ G C+CG GCLE S SAL + + S Q E + Sbjct: 247 GHMSIDYKGQQCECGNRGCLELYCSTSALLQTLKKEHASLKSIWQELKEVKSGET----- 301 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 V ++A +G L N +N N ++I L G+ L+T+ + Sbjct: 302 -------REAVRQAAWYLGFGLVNIINTFNPDRIILGDEMAEAGDLLLDTVKSVIKEHVL 354 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 I ++G + +E+ L Sbjct: 355 PDVYS----QLTIELASDDMDTMLVGSAIVAIESILDN 388 >UniRef50_Q8EL07 Transcriptional repressor of the xylose operon n=1 Tax=Oceanobacillus iheyensis RepID=Q8EL07_OCEIH Length = 402 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 73/405 (18%), Positives = 163/405 (40%), Gaps = 16/405 (3%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M N + I+ N+ +IL+ + ++ ++S +A+ IS V+ + EL K V Sbjct: 1 MSRTGNLKLIQELNRSLILDTIRKKGPISRSDIAKKLTISPTTVTTAVSELIEGKIVYED 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 + G P+ + +++T + I+ N K + + + + Sbjct: 61 GVGNSNGGRKPVLLRFNPDTHSIIGVSITNSKIKIAEMNLEGKVKKKSVEITNNEQG-ED 119 Query: 121 LLSEIEKCW---HRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 ++ + + ++ K+ D+ +++ G V+ G + +K ++E Sbjct: 120 IIKLVIETLKTFIKNEKVNLDYCEGVSIITPGIVNSEEGCISYNSHLGLYN-IPLKKMVE 178 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSG 236 +G+ ++ND AE + + + + + GIGS +IN+ IY+G +G Sbjct: 179 STIGLPTFLENDVNAFVSAESYFGSYNHYNSILFLTIGDGIGSGIMINDSIYKGYKGSAG 238 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQL------DPEKLT 290 +IGHT V P G+ C CG GC+E + ++ + + ++ T + D K+T Sbjct: 239 EIGHTTVVPGGIKCKCGNSGCVENYVNWPSIHSRIVSAIITKGRDTLIKNYIGNDFTKIT 298 Query: 291 TAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTII 350 + A + + +D N + +++ N ++ L+ I L G + +++ + Sbjct: 299 PDMFVLAIRENDELCKEIMDDMVNYLSITIVNAIHTLSPELIILSGAIIHGNQVFIDQLQ 358 Query: 351 RQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + R + L +LG + ++ + R Sbjct: 359 EEVKK----RLLPIIREDVNFQSTSLGPDFDLLGAASVILQGRFR 399 >UniRef50_Q9K992 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus halodurans RepID=Q9K992_BACHD Length = 386 Score = 366 bits (942), Expect = e-100, Method: Composition-based stats. Identities = 73/416 (17%), Positives = 154/416 (37%), Gaps = 53/416 (12%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M + + I+ NK ++L+ + ++ +++ ++ ++ VS+++ EL ++ V + Sbjct: 1 MSVTGDQRFIKQMNKQIVLQTIRKEAPLSRAQVSLTTGLNKGTVSSLVAELIADNLVYEV 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 + G + + + + +N+ + + + + + E+ + Sbjct: 61 GPGESSGGRRPVMLMFQNKAAYAIGINIAVNYLSGVLTDLVGNVIEKVEW-SLHVKEFDH 119 Query: 121 LLSEIEKCWHRHRKLWP---DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 + ++ + + K P I + +A+ G V+ G P W + +K LE Sbjct: 120 VNQQMVQLIEQLMKAAPPSTYGIIGIGVAVPGIVN-EEGDVLFAPNLNWR-EIPLKKQLE 177 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVIN------------- 224 E + + V+N+ AL EK +E + N Sbjct: 178 EHFQLPIAVENEANAGALGEKVFGKGKESE----------------NMIFFSIGIGIGSG 221 Query: 225 ----EQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPV 280 +YRG SG++GH + +G +C CG GC E AS A+ +Q + Sbjct: 222 IIFGNSLYRGKGGYSGEVGHMSIETNGPLCTCGNKGCWELFASEKAVLQQGEALYE---- 277 Query: 281 STQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCA 340 E LT L + GE + +G + N +N LN + + R Sbjct: 278 ------EVLTLDDLFEKARKGEQTAIDLFQKIGVYLGTGIANMINALNPELVVVGNRMVK 331 Query: 341 FGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 +++ + DR + + F L+ LG+ YL +++ L + Sbjct: 332 GRPWLEHSLKQTVA----DRALSFHAEQVLVEFSDLNENGISLGVSYLLIDSFLEK 383 >UniRef50_Q64GL6 Rep n=2 Tax=Actinobacteria (class) RepID=Q64GL6_9ACTN Length = 389 Score = 366 bits (940), Expect = 1e-99, Method: Composition-based stats. Identities = 75/395 (18%), Positives = 145/395 (36%), Gaps = 21/395 (5%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + +R N+ I+ + ++ + LA + +S VSNI++EL + Sbjct: 2 TPGSQTSLREANRARIVSAVQQRGSLTQVELAGVTGLSPATVSNIVKELTGAGVLHTSPT 61 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 G + +A ++ S+ VA+ + A L Sbjct: 62 SRS--GRRAQQVTLARNLGLVGGIHFGSRSLRVAVADVAHRIVADQRMPLPPDHRADAGL 119 Query: 123 SEIEKCWHRHRKLWPD---HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + + + + + VD TG T+ + V +LE + Sbjct: 120 ERAALLLTEMVESVDSSLQEVLAVGVGVPAPVDVRTGQISTIGVLRGWDGICVPEVLERR 179 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 LG+ V VDN+ + ALAE ++ R + + +G+G V+N +++ G +G+I Sbjct: 180 LGLPVYVDNEANLGALAEVRFGAARGRQHVVYLRISHGVGGGIVLNGEVFHGRSGTAGEI 239 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH ++ +G +C CG GCLET L LT +IA Sbjct: 240 GHVTIDDNGPICRCGNRGCLETFVGAPVLLSMLTASHG-----------HLTLPDVIARA 288 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 Q G+P + + +G++ + N+ + + + GR G ++ + Sbjct: 289 QQGDPGCRRVISDAGRYLGVAAASVCNLFDPELVVVGGRLAEAGPILMDPLRTVLAQRTV 348 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 GP ++ +L A +V G + ++ Sbjct: 349 PSTAGP----VEVVASELGSAAEVRGALVVALDHA 379 >UniRef50_Q1AZ04 ROK domain containing protein n=2 Tax=Actinobacteria (class) RepID=Q1AZ04_RUBXD Length = 402 Score = 365 bits (937), Expect = 2e-99, Method: Composition-based stats. Identities = 85/384 (22%), Positives = 136/384 (35%), Gaps = 19/384 (4%) Query: 17 VILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLI 76 I L+ + ++ LA + ++ VS ++ L VV + T G Sbjct: 11 QIFGLIRSGRARTRAELAAVTGLTRATVSQRVEVLMEAGLVVETKEGVSTGGRPPMVLGF 70 Query: 77 APEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEI---EKCWHRHR 133 + L ++ T VA+ P E A P A+L + + Sbjct: 71 NKDAGVVLAADLGATHCRLAVADLGGRPLVELPADLDIAQGPDAVLGWVQDRFEELLEEA 130 Query: 134 KLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL-GIRVMVDNDCVM 192 + + + + G VD G + + P P V + E+ G+ V+VDND + Sbjct: 131 GRSREEVWGIGVGVPGPVDFARGQAVSPPIMPGWDRVPIPERFRERFGGVPVLVDNDVNI 190 Query: 193 LALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGV-VCD 251 +AL E N S + V GIG V +I+RG +G IGH ++ VC Sbjct: 191 MALGEHRVNWSDVEHLLFVKVATGIGCGIVAGGRIHRGERGAAGDIGHIRISGHEETVCR 250 Query: 252 CGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDR 311 CG C+E VA AL KQ S ++ ++G P V Sbjct: 251 CGNVACVEAVAGGWALAKQLSGLGYPATGS----------RDVVGLVRAGNPAAARLVRT 300 Query: 312 SANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQI 371 + IG L + +N N I + G E I + R + + QI Sbjct: 301 AGELIGEVLASLVNFFNPAVIIIGGDLAHAHEQLFAGIRSVV----YQRSLPLATRHLQI 356 Query: 372 GFGQLSRAQQVLGIGYLYVEAQLR 395 +L + G + +E LR Sbjct: 357 VPSELDDRAGIHGAAAMVIEHVLR 380 >UniRef50_B0K1L9 ROK family protein n=9 Tax=Thermoanaerobacterales RepID=B0K1L9_THEPX Length = 400 Score = 365 bits (937), Expect = 2e-99, Method: Composition-based stats. Identities = 72/407 (17%), Positives = 150/407 (36%), Gaps = 28/407 (6%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + ++ NK ++L + ++ +++ +A + ++ VS ++ EL +E V Sbjct: 2 ITADQLLVKQINKSIVLNTIRKKGNISRADIAHITGLNKSTVSFLVDELINEGFVREEGP 61 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 + G I + +++ I + + + E + + QA++ Sbjct: 62 GASKGGRKPIILSINNNAGCIIGIDLDVNYILIVLTDLMANVIWEKKVDIKIGESQQAII 121 Query: 123 SEIEKCWHRHRKLWPD-----------HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVE 171 + + P+ VD G P W V Sbjct: 122 ERLIELIDEAILNAPNTIRGILGIGIGVPG--------IVDYKKGSILMAPNLKWQD-VP 172 Query: 172 VKYLLEEKLGIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRG 230 +K ++E K I+V +DN+ + A+ EKW + +F ++ GIG+ +IN ++YRG Sbjct: 173 LKEIIENKFKIKVHIDNEANVGAIGEKWFGTGIKYNNFVYVSAGIGIGTGIIINGELYRG 232 Query: 231 SLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEK-- 288 ++ +G++GH +N C CG GC E AS AL L ++ + Sbjct: 233 TVGLAGEMGHMTINIHDHQCSCGNTGCWENYASEKALFDYIHTQLIMGKSDNYINKDNFN 292 Query: 289 -LTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLN 347 L+ +I Q G + +G+ + N +N N + + G+ L+ Sbjct: 293 TLSALDIINYAQKGSEIAVEALKEIGRKLGVGIVNVINTFNPELVIIGNTLSLAGDLILD 352 Query: 348 TIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 ++++ + +I +L +G L + Sbjct: 353 EVLKEVEK----KCLVYRYYKVKIKTSKLQFHAGAIGAVSLVISELF 395 >UniRef50_A5V137 ROK family protein n=2 Tax=Roseiflexus RepID=A5V137_ROSS1 Length = 408 Score = 364 bits (936), Expect = 3e-99, Method: Composition-based stats. Identities = 86/401 (21%), Positives = 169/401 (42%), Gaps = 13/401 (3%) Query: 1 MR---ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRV 57 MR A Q R+HN ++L ++Y + +++ +AR ++ VS ++ EL + + Sbjct: 1 MRSLLAKATRQHTRNHNSRLVLRVIYEDEAISRADIARKTGLTRTTVSAVVNELIEQGLI 60 Query: 58 VNIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPT 117 + G + E L+ T I + + + + Sbjct: 61 EETGAGQSSGGRLPILLRVVHESHCVAALSFEDTQIVGALVDMRGGIQRRVSVP-LQGYR 119 Query: 118 PQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 P+ L + + H + + L++ G VDPV G+ + ++ LL+ Sbjct: 120 PEDLPGYLTQLLDDLTADPAPHILGIGLSMPGIVDPVRGMVRRAVNFGLVD-TPLRQLLQ 178 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 ++ + V +DN + ALAE + + VI++ G+G+ V+N ++ G +G+G Sbjct: 179 DQYRLPVYLDNAARLTALAEYMFGDGAASGNLVVISIGVGVGAGIVLNGALFSGDGFGAG 238 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWL---KSQPVSTQLDPEKLTTAQ 293 +IGH +V +G+ C+CG GCLETVAS++A+ + AR S+ S + Sbjct: 239 EIGHVVVADNGIRCNCGNVGCLETVASVTAIVRAARRLATDPSSRLRSLASAAAAIDFNT 298 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT 353 A + G+ + V +G+++ + + +LN+ +I L G A G L + Sbjct: 299 FCRALEEGDDGVAGIVTEVGRYLGIAVAHIVGLLNVERIVLTGAIAALGPPLLEAVKTSL 358 Query: 354 GFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + P T++ +LGI + ++ + Sbjct: 359 ARHALA----PLAAMTRVDLVPERHDAVLLGIAAMVLDHEF 395 >UniRef50_C8WRQ2 ROK family protein n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WRQ2_ALIAD Length = 399 Score = 363 bits (934), Expect = 5e-99, Method: Composition-based stats. Identities = 86/402 (21%), Positives = 150/402 (37%), Gaps = 21/402 (5%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M A ++ +R N+ +L+L+ + ++ ++++ ++ VSNI+ EL +E+ V+ + Sbjct: 1 MHANVDASAMRRMNRATVLKLIRDLRTTSRIDISQMTGLNKATVSNIVDELIAEQLVLEV 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 S + G + + ++V + + V N P + P Sbjct: 61 GYGSSSGGRKPILLRFNANAAYAIGVDVQLSHMTTVVCNIRGEPVYRQVRTLGLSEAPDV 120 Query: 121 ---LLSEIEKCWHRHRKLWP---DHTINLALAIHGQVDPVTGVSQTMPQA--PWTTPVEV 172 LL IE+ + P + LA G VD G +P + Sbjct: 121 RAVLLEAIEEELRKAIAAAPPSPYGLLGACLAFPGMVDFRRGAVYYLPSLFVGEWE---I 177 Query: 173 KYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSL 232 L + I + +DND A E + ++ +N+ GIG+ VI ++YRG Sbjct: 178 LADLGRSVDIPLFLDNDANCGAWNEYMAQAMKLKNLVFVNMGLGIGAGIVIEGKLYRGRD 237 Query: 233 YGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTA 292 +G+ GH +NP G C CG YGC E AS L + R + D Sbjct: 238 GIAGEAGHMTINPMGSACMCGGYGCWEEYASERGLMRYLREAGADLSALSLRDSL---LE 294 Query: 293 QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQ 352 Q + Q+ +GL + N LN+LN +++ L G L + R Sbjct: 295 QALEQAQNDNRACIRAFHSLGQYLGLGIANLLNLLNPDEVILGGSVARAATFVLPEVERV 354 Query: 353 TGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 ++ K + G + +G L V L Sbjct: 355 IKHRALLQN-----KQIPVRVGS--QHAVAIGASLLAVHETL 389 >UniRef50_UPI0001788127 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001788127 Length = 390 Score = 362 bits (931), Expect = 1e-98, Method: Composition-based stats. Identities = 75/395 (18%), Positives = 144/395 (36%), Gaps = 21/395 (5%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + ++ N +IL+ + + +++ +++L ++ VSN++QEL S V I Sbjct: 4 ITGDQALVKKINTSIILDTIRQHAPVSRAKVSKLTGLNKATVSNLVQELCSNHLVQEIGP 63 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDA--PTPQA 120 + G L + + + + + I + + E + + Sbjct: 64 GESSGGRKPQLLLFNGQAGYAIGVELRVKQITAVLTDLEGRILAEEDTALEAHGVESVTR 123 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 L+ + R P I + + + G VD G P W V ++ LE +L Sbjct: 124 LMVGMIHGLMRQAPPSPYGIIGIGVGVPGMVDGD-GTVLFAPNLGW-DMVPLQEQLELEL 181 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 G+ V +DN+ A E ++ R I+ GIGS +IN ++Y+G+ +G+ G Sbjct: 182 GLPVTIDNEANAGAQGELRFGAGRDARHLLYISAGSGIGSGIIINGELYKGARGYAGESG 241 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 H + +G C CG GC E AS T++L+ + Sbjct: 242 HMSIEAEGRECSCGNRGCWELYASEK------------SYDGKDAVLPSRRTSELVHHAE 289 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 G + +G+ + N +N N + + G T+ + Sbjct: 290 LGHKDTIRHFEELGRYLGIGITNLVNGFNPQSVIIGGPLSDARAWIEETLQQVVAQ---- 345 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 R + +I F +L ++G Y + L Sbjct: 346 RTLPYHRERMEIRFAELGSRSTMIGAAYSAISQFL 380 >UniRef50_Q7MLY6 Transcriptional regulator n=62 Tax=Gammaproteobacteria RepID=Q7MLY6_VIBVY Length = 435 Score = 361 bits (928), Expect = 3e-98, Method: Composition-based stats. Identities = 67/393 (17%), Positives = 162/393 (41%), Gaps = 11/393 (2%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M + I+ N + +L+ + ++ L++ ++++ +++ I +EL V Sbjct: 33 MAQPGHIDHIKQVNAGRVYKLIDLKGPISRIDLSKESELAPASITKITRELIEAHLVHET 92 Query: 61 DDESQ-TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ 119 + +RG + + G L + + + + + + + I Sbjct: 93 TVQEAISRGRPAVGLQVNNAGWQFLSMRLGRGYLTIALHELGGEVLIDTK-IDIHERDQD 151 Query: 120 ALLSEIEKCWHRHRKLWPD---HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 +L+ + + + D ++A+ + G V+ G+ MP + + + Sbjct: 152 DVLARLLHEIEEFFQTYADQLDRVTSIAITLPGLVNSEQGIVLQMPHYNVEN-LALGPEI 210 Query: 177 EEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 + G+ V + ND ALAEK +SQ + +I++ +G+G+ +++ ++ +G Sbjct: 211 YKATGLPVFIANDTRAWALAEKLFGHSQGNENSVLISIHHGLGAGIILDGRVLQGRHGNI 270 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLI 295 G++GH ++P G +C CG GCLETVAS A++++ + + S + E +T + Sbjct: 271 GELGHIQIDPQGKLCHCGNRGCLETVASSKAIREEVMERIANGESSILEELEDVTIESIC 330 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF 355 A +G+ +++ +G ++ +N+ N ++ + G E I R Sbjct: 331 EAAANGDALAVDVIEKLGRYLGSAIAIVINLFNPEKVLIGGVINQAKEVLYPAIRRCIEE 390 Query: 356 NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYL 388 + + ++ + + + G + Sbjct: 391 ----QSLPVYHQDLELVESRFYKQATMPGAALI 419 >UniRef50_A8L0L3 ROK family protein n=25 Tax=Actinomycetales RepID=A8L0L3_FRASN Length = 401 Score = 361 bits (927), Expect = 3e-98, Method: Composition-based stats. Identities = 92/393 (23%), Positives = 150/393 (38%), Gaps = 22/393 (5%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 + +R N+ +L +L R+ ++ +ARL +S VSNI+ EL V Sbjct: 21 PGSQSSLRAANRDRVLGVLRREGSLAQAEIARLTGLSPATVSNIVGELRESGDVDVRPAV 80 Query: 64 SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLS 123 + G + ++ + L+ + + + E Q ++ Sbjct: 81 --SGGRRAVRVSLSRRSGVVIGLDFGHRHLRVAIGDLAHEVLAEDVVDIDVDHQAQEGIA 138 Query: 124 EIEKCWHRHRK---LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 + + + + + + G +D VTG + P V + E+L Sbjct: 139 TAGRLVDDLLGRLAVDRADVVGVGMGLPGPIDAVTGAVGSSAILPGWVGVPAAAQMSERL 198 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 G+ V VDND + ALAE Q RD + G+GS VI+ +++RG +G+IG Sbjct: 199 GLPVRVDNDANLGALAELHWGAGQGVRDLAYLKASTGVGSGLVIDGRVHRGGAGTAGEIG 258 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 HT ++ +G VC CG GCLET+ S L + R LT +I Sbjct: 259 HTTLDENGSVCRCGNRGCLETIVGTSVLLESLRTSHG----------PDLTVRGMIDRAV 308 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 +G+ V + AIG + N N+LN I + G A GE L + + Sbjct: 309 AGDAGCARVVSDAGRAIGNAAANLCNLLNPQVIVVGGDLAAAGETLLEPMRQVVHRFAVP 368 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEA 392 I G L +VLG L + Sbjct: 369 AAVP------TIVAGVLGERAEVLGALALVLRE 395 >UniRef50_Q44406 Xylose repressor n=4 Tax=Clostridia RepID=XYLR_ANATD Length = 399 Score = 360 bits (924), Expect = 6e-98, Method: Composition-based stats. Identities = 82/406 (20%), Positives = 162/406 (39%), Gaps = 28/406 (6%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 N+ ++ NK ++L+ + K +++ +++L ++ VSN+ EL E VV Sbjct: 2 GNHTLLKQINKLLVLKTILDNKIISRTKISKLVDLNKATVSNLTDELIKEGYVVEKGYGK 61 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 G + + + +++ I ++N E + LL Sbjct: 62 SKGGRRPVLLQVNKDVGSIIGIDLGVDYIHIILSNFVGEVIFEEYANMKIGEDKEKLLRL 121 Query: 125 IEKCWHRHRKLWPDHTINLALAIH-----------GQVDPVTGVSQTMPQAPWTTPVEVK 173 + + K P G ++ +G P W V ++ Sbjct: 122 LFDLIEKSVKKAPQ--------TPKGILGIGIGVPGIIEKESGTVLLAPNLKWQN-VPLR 172 Query: 174 YLLEEKLGIRVMVDNDCVMLALAEKWQNN-SQERDFCVINVDYGIGSSFVINEQIYRGSL 232 ++++K + V +DN+ AL EKW + D ++V G+G+ +I+ +++RG+ Sbjct: 173 SIVQQKFNLPVYIDNEANAGALGEKWFGEWGKVSDLIYLSVGIGLGAGIIIDNKLFRGAA 232 Query: 233 YGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVS---TQLDPEKL 289 +G++GHT +N VC CG GCLE AS AL + +K + + +++ Sbjct: 233 GFAGEVGHTTINFQDDVCSCGNIGCLENFASERALLSVIKKLVKQGVEDRYISWENVDEI 292 Query: 290 TTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 T +++I A + G + A +G+ + N +NI N + + ++ FGE +L + Sbjct: 293 TPSRIIQAAKEGSRVCRMAILEVAEKMGIGVANLVNIFNPEMVIIGNKASFFGELFLEKL 352 Query: 350 IRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 F +I +L VLG + + L Sbjct: 353 REVINQRSF----IAQFYNLKIEVSKLKDRAVVLGCIAMVISDMLS 394 >UniRef50_C6CXN7 ROK family protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CXN7_PAESJ Length = 387 Score = 360 bits (924), Expect = 7e-98, Method: Composition-based stats. Identities = 83/396 (20%), Positives = 162/396 (40%), Gaps = 23/396 (5%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + I+ N+ +IL+ + ++ +++ ++++ ++ VS + +L E+ V+ + Sbjct: 2 ITGDASYIKKMNRSLILKEILKEGMLSRADVSKVTALTRATVSGQVADLLDEELVIETEI 61 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 E G I E + + +++ I +++ S + + +L Sbjct: 62 EYNQVGRKPIMLSINAEAGYAIGIDLEYDQISFAISDLKGSLVLTDTIK-LQSHAYADIL 120 Query: 123 SEI---EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 S + K + I + +AIHG V V +P W V +K LE Sbjct: 121 SLLTGQIKHYQERFAASRYGIIGIVIAIHGLVSTDE-VIHYIPSFGWHD-VPLKSDLENA 178 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 LG++V ++N+ + A AE+ + + D + + GIG +IN +RG +G+IG Sbjct: 179 LGLQVKLENNANLSAFAERVFFHHETDDLISVTLYSGIGMGMMINHSFFRGQDGFAGEIG 238 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 H IV P G+ C+CG GC E AS +++ + R + +T AQ+ + Sbjct: 239 HMIVVPGGLPCNCGNKGCWEKYASETSVFQLLRA---------KKPDADITYAQIGNWIE 289 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 + EP T +++ + + L N +NI N + L + L I Sbjct: 290 AKEPDATELIEQFIYYLSIGLNNIINIYNPEVVVLDSELLRIYPDSLQHIESNLNSRVSH 349 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 +I + + VLG + ++ LR Sbjct: 350 YR--------EIKISTIGKKSCVLGACAIAIQNFLR 377 >UniRef50_UPI00017885B4 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017885B4 Length = 403 Score = 358 bits (921), Expect = 2e-97, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 165/401 (41%), Gaps = 14/401 (3%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ N++ I+ N+ +L + + ++ LA+ ++S V++ +QEL E V I Sbjct: 4 MKKG-NHKLIQALNRSKVLNKIRTEGPISRIELAKKNKLSPSTVASAVQELIREGYVSEI 62 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 S + G P+ + L +++T + + N + + I +A Sbjct: 63 GTGSSSGGRKPILLKFNPDNHFLLAVSITNSVMILARMNLEAKVFAKETHP-IAGLQGEA 121 Query: 121 LLSEIEKCWHRHRK--LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 ++ + + + + +++ + G V GV + T V +K + E+ Sbjct: 122 VIERLLQLMDDFMAGQEDLERCVGISINVPGIVSDSHGVVHYNTKLR-MTNVPLKRIFED 180 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 + G+R V+ND + LAE+ + + I++ G+GS +IN+ + RG G+G+ Sbjct: 181 RYGMRTWVENDMNSVVLAERRFGDYAFANLIYISIGDGLGSGILINDHLLRGKHGGAGEF 240 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLI--- 295 GHT VN G+ C+CG GCL++ S A+ + + + + + ++++ Sbjct: 241 GHTSVNRSGIRCECGNAGCLDSYISWIAVYSRIITAIATGRPTMIQELSGGDYSKIVPSV 300 Query: 296 --AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT 353 A + G+ + A +G ++ N +N+ N + L G L+ + Sbjct: 301 FKEALRKGDKLARDLNEEVAEHLGAAIVNLVNMFNPEALILGGDLAHGNPELLDMVSVYI 360 Query: 354 GFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + G L +++G + ++ L Sbjct: 361 DRHA----MPILKDDMVFGLASLGEEDKLMGAASVLLQDLL 397 >UniRef50_A9BHH0 ROK family protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BHH0_PETMO Length = 385 Score = 358 bits (919), Expect = 3e-97, Method: Composition-based stats. Identities = 85/397 (21%), Positives = 160/397 (40%), Gaps = 17/397 (4%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ + ++ +N +I + L Q ++ +AR ++ VS I L +K + + Sbjct: 1 MKK-ASLSSLKENNAALIFQSLRIQGPMTRAEIARETRLMPSTVSYITNLLIHKKVLKEV 59 Query: 61 DDES-QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ 119 E G I + + +V V+N ++ Sbjct: 60 GSEDVSRVGKKGILLDINYDDFLFIGYDVGSAYSRVIVSNGKGDILYSKRFVSEKN---D 116 Query: 120 ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 LL +I + + + + I + +A G +DP GV + EVK +++++ Sbjct: 117 KLLKQIYENIKMVKNKF--NIIGIGMAFPGYIDPENGVVIRSHNIDISN-FEVKKVMKKE 173 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 + VD++ +M+A N+ +E+DFCVIN+ GIG V N +I RG +G++G Sbjct: 174 FNLPAYVDHNTIMMARNLISNNSHKEKDFCVINIGPGIGVGIVSNGKILRGYKNAAGELG 233 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 H VNP+G C+CG+ GCLET +S A+ + KL + + Sbjct: 234 HVTVNPEGRKCNCGKNGCLETESSSKAIVRNYEEISGKNLECEGSCESKL----VYELAK 289 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 G+ +R+ +G+ + +NILN ++++ G E ++ + + F Sbjct: 290 KGDENAIKAFERAGKYLGIGIATLVNILNPEKVYIAGGVSNGWEFLKDSTEQSYNQHIF- 348 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 + K I + G E +R+ Sbjct: 349 ----YANKDVTIEVSSIGEYITACGAATYAFEKYVRE 381 >UniRef50_A9B0H5 ROK family protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B0H5_HERA2 Length = 414 Score = 357 bits (917), Expect = 4e-97, Method: Composition-based stats. Identities = 73/386 (18%), Positives = 158/386 (40%), Gaps = 27/386 (6%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 + +R N+ ++L+L+ R+ R +++ +A+ ++S VS+I+ +L V Sbjct: 8 TADLSLMRELNRALVLQLIRREGRISRADIAKHTKLSRSTVSSIINDLIDASLVTETGIG 67 Query: 64 SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA--- 120 + G + ++ + L+V+ ++ + + + P Sbjct: 68 TSKGGRRPIILEFNYQANYIIGLDVSRNAVSAVITDLNARICSRRQISFNVNDGPTVGMP 127 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 L+ ++ + + + + G +D G + P P V ++ L + Sbjct: 128 LIKQLISTMLTESPVGRGRISAIGVGVPGPLDFRNGRTIAPPVMPGWDNVPIREELSQTF 187 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDY-GIGSSFVINEQIYRGSLYGSGQI 238 + V +DND + A+AE Q ++ + + GIG+ +I+ ++RGS+ +G++ Sbjct: 188 RLPVSIDNDANLAAMAEYRWGAGQGAQNMVYLYMSSAGIGAGLIIDSHLFRGSIGSAGEV 247 Query: 239 GHTIVNPD-----GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQ 293 GHT ++ + G + G LE +AS + + AR +L Sbjct: 248 GHTTLSVENDESFGPI----NAGSLEALASQITVLRLAREQ--------KLISADDDVHT 295 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT 353 L+ +S P I + + R+A+ +G+++ + +NI N +++ + G + TI Sbjct: 296 LVRKAES-SPEIQAILRRTAHYLGVAIASIINIFNPDRVVIGGVIPETSPLLIETIRATV 354 Query: 354 GFNPFDRDEGPSVKATQIGFGQLSRA 379 R +V T I G L R Sbjct: 355 AR----RALSIAVNNTSIVPGALGRN 376 >UniRef50_A4FQW3 Transcriptional regulator, ROK family n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4FQW3_SACEN Length = 405 Score = 356 bits (916), Expect = 6e-97, Method: Composition-based stats. Identities = 73/397 (18%), Positives = 160/397 (40%), Gaps = 11/397 (2%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 N ++ N+ V+L+ + ++ LA ++ +SNI++ L ++ V Sbjct: 7 QGTNLPRVGGFNRAVVLDTIRAHGEVSRVELAERTGLTAQTMSNIVRALMADGLVAENGH 66 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 T G + P+ ++ L++ P SI + + + +P + Sbjct: 67 APSTGGKRRVLLRVVPDAYSSVGLHLDPESITGVLLDLAGGVRLRSRRRVPQDASPATVA 126 Query: 123 SEIEKCWHRH---RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + + + + + + + LA+ G +D P P V + L+E++ Sbjct: 127 AALTRTLKQLVRRSGIDESRVLGVGLAVPGPLDADHRRVLGPPNLPGWDDVALADLVEQR 186 Query: 180 LGIRVMVDNDCVMLALAEKW-QNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 G+ V++DND A+ E+W ++ F + + G+G V+ +Q++RG+ +G+I Sbjct: 187 AGMPVVMDNDATAAAIGERWAAGKARRGSFVYVYLGAGVGVGVVLGDQVHRGTSNNAGEI 246 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH G C CG+ GCLE S+ A+ + S S + D ++ A Sbjct: 247 GHVNGGGAGRPCSCGKRGCLEAYCSMRAIVDE----WLSATGSPEGDSVSADYEEICRAA 302 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 G+ + ++A +G +L +++L+++ + L G + E + + Sbjct: 303 AGGDATAVRLLRQAATKLGQALATVVSVLDVDHVVLGGPALRHVEEL---VRSRVEKTLA 359 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 P+V+ ++ + +G L ++ Sbjct: 360 AHVWAPAVRPVRVRTALIGEDAGAVGAASLVLDHAYS 396 >UniRef50_A3DCE9 ROK domain containing protein n=2 Tax=Clostridium thermocellum RepID=A3DCE9_CLOTH Length = 404 Score = 355 bits (911), Expect = 2e-96, Method: Composition-based stats. Identities = 91/400 (22%), Positives = 175/400 (43%), Gaps = 15/400 (3%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 ++ I +N+ I + K N++ +A+ +SIPAV +I +L + + I Sbjct: 5 TKLDLNSITSNNRMNIFNCILEAKEINRAVIAKKVGLSIPAVMSITDDLIQKGIIYVIGK 64 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 + G + P+ + + ++V TS+ V N C + ++ P L+ Sbjct: 65 GKSSGGKRPELLAVVPDRFFFVGVDVGRTSVRVVVMNNCRDVVYKVSKPT-ESVEPDELI 123 Query: 123 SEIEKCWHRHRKLWP---DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 ++I + D + + +A+ G ++ TG P W + ++ L++ Sbjct: 124 NQITEMTMESINESKFPLDRVVGIGVAMPGLIERGTGRVIFSPNFGW-NNIALQDELKKH 182 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQERDFCV-INVDYGIGSSFVINEQIYRGSLYGSGQI 238 L V+V+N L + E V +N+ YGIGS+ V+ +Y G SG+I Sbjct: 183 LPFNVLVENANRALVIGEIKNTQPNPTSCIVGVNLGYGIGSAIVLPNGLYYGVSGTSGEI 242 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVST-----QLDPEKLTTAQ 293 GH IV G C CG YGC+E++AS A+ ++AR+ + ++ S+ + D +K+ Sbjct: 243 GHIIVENHGSYCSCGNYGCIESIASGEAIAREARIAIANKIQSSVFEKCEGDLKKIDAKM 302 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT 353 + A + G+ S V+++A+ IG L +N+L+ QI L G G+ +++ I + Sbjct: 303 VFDAAKEGDHLAQSIVEKAADYIGKGLAITINMLDPEQIILCGGLTLSGDFFIDMIKKAV 362 Query: 354 GFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 + +I G+ +G ++ Sbjct: 363 SKYQ----MRYAGGNVKIVVGKSGLYATAIGGAWIVANNI 398 >UniRef50_D2SD76 ROK family protein n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SD76_9ACTO Length = 390 Score = 353 bits (907), Expect = 7e-96, Method: Composition-based stats. Identities = 78/385 (20%), Positives = 139/385 (36%), Gaps = 22/385 (5%) Query: 18 ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIA 77 +L + + +++ L L S VS + +L + + T G Sbjct: 13 LLRHVRTGRARSRAELVALTGASRNTVSARVDQLIAANLLAEGGRGWSTGGRPPTLLQFN 72 Query: 78 PEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL---SEIEKCWHRHRK 134 L +++ TS++ V + + A P+ +L + + Sbjct: 73 SRAGCVLAVDLGVTSVDVAVTDLSAQVLATVGHPIDIADGPRPVLAEVDRLAQLVLADAG 132 Query: 135 LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLA 194 L P + + + G V+ +G P P + + V VDND ++A Sbjct: 133 LEPADVCAVGIGVPGPVEHSSGRPSHPPIMPGWHDFPIPSAFG-RYECPVYVDNDVNVMA 191 Query: 195 LAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV-NPDGVV--CD 251 L E +D V+ V GIG +++ ++YRG+ +G IGH V PDG + C Sbjct: 192 LGEM-GAAGSVQDVLVVKVGTGIGCGVIVDGRVYRGAQGSAGDIGHIHVTTPDGRLVTCR 250 Query: 252 CGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDR 311 CG+ CLE +A AL + A TT +++ G+ V Sbjct: 251 CGQENCLEALAGGGALLRDAVAAG----------LPVSTTREVVERAAQGDGAAIELVRE 300 Query: 312 SANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQI 371 + IG L +N N ++I + G G L I + R + +A +I Sbjct: 301 AGRTIGTVLAALVNFFNPHRIVVTGGVAQAGVPLLAGIRESV----YRRSMPLAARALEI 356 Query: 372 GFGQLSRAQQVLGIGYLYVEAQLRQ 396 + +G + +E L + Sbjct: 357 TVSEAPELSGRVGAALMAIEGFLDE 381 >UniRef50_A7VWZ1 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VWZ1_9CLOT Length = 394 Score = 353 bits (907), Expect = 7e-96, Method: Composition-based stats. Identities = 77/394 (19%), Positives = 156/394 (39%), Gaps = 21/394 (5%) Query: 7 NQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQT 66 + +R N +++ L+ + +++ L++ + + +++I+ L V+ Sbjct: 11 LKDLRESNIALVINLMRKFGICSRAELSKASGLVQSTITSIIDSLIKAGIVIETGSLVGG 70 Query: 67 RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKG-EFEYLQIDAPTPQALLSEI 125 RG S + E L + VT +S + + K E + D P ++ I Sbjct: 71 RGRRSIGIRLNTEKLIVLGIRVTRSSYTLAIIDIFGELKNLEKHSITKDLEDP-SVFERI 129 Query: 126 EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVM 185 + + + +A+ G S + E +L + V Sbjct: 130 LEDASTFLLKNDQKPVGVGMALPGPYLINEDTSLFLTN-QGWKSFTFTKKFESRLHLPVF 188 Query: 186 VDNDCVMLALAEKWQNN---SQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 V+ D + A+ E W N Q ++ G+G+ V++ +I RG+L +G+IGH Sbjct: 189 VEQDSNVGAMGEWWFGNSEIGQGTK-VFVSTGDGVGAGIVVDGKIQRGALGAAGEIGHMS 247 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 +N +G C CG GCLE S A+ K A+ K L L+ +++G Sbjct: 248 INFEGPQCQCGNKGCLELYCSEKAILKAAKCLSK----------PILNFESLVTEYRAGN 297 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDE 362 +T V+R+A G+ + N + N + + G G+++L+ + R + + Sbjct: 298 SAVTEIVNRAAEMFGIGIANIAYLFNPGVVVVGGSYKKLGDSFLDQVNRTVRRHIY---- 353 Query: 363 GPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 + + F L ++GI + + L++ Sbjct: 354 PLFYQNIGLQFSALEHDSCLIGIAAVVFDRLLKK 387 >UniRef50_B2IDS2 ROK family protein n=2 Tax=Rhizobiales RepID=B2IDS2_BEII9 Length = 428 Score = 353 bits (906), Expect = 8e-96, Method: Composition-based stats. Identities = 80/406 (19%), Positives = 163/406 (40%), Gaps = 16/406 (3%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + + IR N+ +L+ + R + +++ + + +S VS+++ L E + D Sbjct: 2 QTGDTELIRAINRFHVLDTIRRFEPVSRAAIGKRTHLSRVTVSSLIATLLQEGLIHEESD 61 Query: 63 E---SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAP-TP 118 E S TRG + + P + + ++ + V N P P Sbjct: 62 ETTNSGTRGRPTNLLGLNPNAAYVVGAKLSMHQVFLIVTNLRADPLARLSLPLHPHQLVP 121 Query: 119 QALLSEIEKCWH---RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQA-PWTTPVEVKY 174 A+++ +++ L L + + G +D G+S P P PV + Sbjct: 122 DAIVALLDEGVRSVVALAGLKLGQIAGLGIGLPGFIDSKAGISHWSPILAPEPKPVALAD 181 Query: 175 LLEEKLGIRVMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLY 233 ++ +LG+ V ++ND +L LAE+W Q +F V+ ++ GIG ++ ++YRG Sbjct: 182 MVRRRLGLAVTIENDANLLTLAERWFGECQENDNFVVVMMEAGIGMGLFLDGELYRGQHG 241 Query: 234 GSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDP---EKLT 290 + GH+ ++ G C CG+YGC+E + A+ ++A +++ D + Sbjct: 242 MGTEFGHSKIDRHGPRCRCGQYGCIEAFTADYAILREAEKIIRTPAAHEGADDTAEAETR 301 Query: 291 TAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTII 350 A ++ + G + + +GL + N +NI++ +I + G + + Sbjct: 302 VATVVRLAREGNVALRQIFATAGEILGLGIANLINIIDPAKIVISGSGTRAVDLIEPALR 361 Query: 351 RQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 N +I F G L ++A R+ Sbjct: 362 AAVAANTLA----VLQNRCEIIFHDQGDEVWARGAASLVLQALYRK 403 >UniRef50_A9B0W0 ROK family protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B0W0_HERA2 Length = 386 Score = 352 bits (905), Expect = 1e-95, Method: Composition-based stats. Identities = 90/378 (23%), Positives = 164/378 (43%), Gaps = 18/378 (4%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + +Q + HN ++ + +Y ++ +ARL ++ VS+ + L E+ V + Sbjct: 6 KKASREQSKLHNYRLVFKAIYDGGAISRVDVARLTNLTPTTVSSNVAILLEEELVQEVGL 65 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 G + + +G + L+V + + N + + +L Sbjct: 66 APSGGGKPATLLSVLDDGRHLIGLDVAGHELRGTIINLRGAIRQRQTLALNGGN----VL 121 Query: 123 SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 ++ + + + + + G ++ GV Q W + ++ LL ++ G+ Sbjct: 122 EQLYQLIDQLLANTHSPVLGIGIGAPGVINTTAGVVQQAVNLGWHN-LALRDLLGKRYGL 180 Query: 183 RVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V + ND + A+AE + + + VINV GIG+ IN +I G +G+G+IGH Sbjct: 181 PVYLANDSHVTAIAEHTFGSQRNAANLVVINVGRGIGAGIFINGRIVGGDAWGAGEIGHV 240 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 +V P G +C CG YGCLETVAS SAL + +TQ + T A++ AA + Sbjct: 241 VVQPHGTLCRCGHYGCLETVASTSALLTKL--------DATQPQSQPWTIAEVQAALAAN 292 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 +P + + VD +A +G+++ N + +LN I L G G + L + R + Sbjct: 293 DPTVRALVDEAAYYLGIAIANVVGLLNAQSIILAGSLAQLGNDLLQPLRRSLAQHALQ-- 350 Query: 362 EGPSVKATQIGFGQLSRA 379 V AT + L Sbjct: 351 --TLVAATDVQVSTLGSD 366 >UniRef50_C7M5N9 ROK family protein n=21 Tax=Bacteroidetes RepID=C7M5N9_CAPOD Length = 402 Score = 352 bits (905), Expect = 1e-95, Method: Composition-based stats. Identities = 76/402 (18%), Positives = 156/402 (38%), Gaps = 19/402 (4%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 ++ I + ++ I+ + L + S+P V+ ++ EL + V++ Sbjct: 9 IKQGIRSASLKKD----IICYYINNGDDTLADLGKELNFSVPTVTKMVGELIEDGIVMDF 64 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 G + + + + ++++ + + N E + + P Sbjct: 65 GKMETPGGRRPNIYGLNQSSGYFIGVDISQKRVHIGLINFKGDLIDEQMDISFEEAHPHE 124 Query: 121 LLSEIEKCWHRHRK---LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 + + + D +++ + I G+V+P TG S + + + E Sbjct: 125 RFERLCEIIEDFMSHTVVPKDKILSIGINISGRVNPQTGHSYSFFYF---DERPLTEMFE 181 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 EKLGI V +DND +A E + Q E++ +NV +G+G ++N Q+Y G SG Sbjct: 182 EKLGIDVSIDNDSRAMAYGEYIKGRVQAEKNIIYVNVGWGLGLGVIVNGQLYYGKSGFSG 241 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQL----DPEKLTTA 292 + GH + ++C CG+ GCLET AS SAL ++ L + S + +++T Sbjct: 242 EFGHITAFENEILCHCGKKGCLETEASGSALYRKFLEKLHNGQSSLLTQQKENEDEITLN 301 Query: 293 QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQ 352 +I + ++ N +G + +N+ N + + G G+ + + Sbjct: 302 DIIDVALQEDILAIELIEEVGNTLGKHVAGLINLFNPELVIIGGTLANAGDYLILPLRSA 361 Query: 353 TGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + K + I +L +LG L + Sbjct: 362 IKKYSLN----LVNKDSSIKVSKLGDKAGLLGASLLARSKFI 399 >UniRef50_D2PV61 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PV61_9ACTO Length = 436 Score = 350 bits (900), Expect = 4e-95, Method: Composition-based stats. Identities = 84/404 (20%), Positives = 147/404 (36%), Gaps = 13/404 (3%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKR-ANKSTLARLAQISIPAVSNILQELESEKRVVN 59 +R N ++ N V+L+ + R ++ ++ LA +S A+SNI + L V Sbjct: 10 VRRGTNLDRVGGFNDTVVLDAIRRAEQRLSRVELAAATGLSGQAISNITRRLLDAGLVRE 69 Query: 60 IDDESQTR-GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP 118 + G + P G + + +++ P + + + A P Sbjct: 70 AGRQKSAGLGKPRTLLELEPTGQYAVGVHLDPAVVTVVLLDLTGQVIARRRAQTPAADGP 129 Query: 119 QALLSEIEKCWHR---HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 L++ I + + + +A G +D GV P V ++ Sbjct: 130 DVLIAGIAATVEDVIAEAGVPRQRVVGVGIAAPGPIDVDRGVVVDPPNLTAWHLVPLRDA 189 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYG 234 L ++ G+ V++D D A AEKW R F + GIG+ VI +++ RGS Sbjct: 190 LRDRTGLPVLLDKDVTAAASAEKWAGGPNGRGSFVFFYLGTGIGAGLVIGDEVVRGSSSN 249 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTA-- 292 G+IGH IV+P+G +C CGR GC+ + L +QA D + A Sbjct: 250 VGEIGHVIVDPEGPLCFCGRRGCVGESSRPRYLVQQAVDAGVVARGIDLDDRHAVDVAFT 309 Query: 293 QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSC-AFGENWLNTIIR 351 L A G V A I + + N+L++ ++ G + + I Sbjct: 310 ALCTAATGGPGAAREIVTALAERIAKVVEDIANLLDLERVVFGGPHWDRLAPFFGDAIRE 369 Query: 352 QTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 R P + L +G L ++ Sbjct: 370 TLEERFLVRSVHPF----TVTGTALGADVGAVGAASLVLDHTFS 409 >UniRef50_P0AF22 N-acetylglucosamine repressor n=95 Tax=Gammaproteobacteria RepID=NAGC_ECO57 Length = 406 Score = 350 bits (899), Expect = 6e-95, Method: Composition-based stats. Identities = 80/397 (20%), Positives = 160/397 (40%), Gaps = 12/397 (3%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 N ++ N + L+ + ++ +A +Q++ +V+ I ++L + +D ++ Sbjct: 10 GNVDLVKQLNSAAVYRLIDQYGPISRIQIAEQSQLAPASVTKITRQLIERGLIKEVDQQA 69 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPT---PQAL 121 T G + + + + + + + + E Y + AL Sbjct: 70 STGGRRAISIVTETRNFHAIGVRLGRHDATITLFDLSSKVLAEEHYPLPERTQQTLEHAL 129 Query: 122 LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 L+ I + +++ + I +++ + G VDP +G MP + LEE+ Sbjct: 130 LNAIAQFIDSYQRKLRE-LIAISVILPGLVDPDSGKIHYMPHIQVENW-GLVEALEERFK 187 Query: 182 IRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + V +D LALAE + SQ+ D ++ V G G+ + N +I+ G G+IGH Sbjct: 188 VTCFVGHDIRSLALAEHYFGASQDCEDSILVRVHRGTGAGIISNGRIFIGRNGNVGEIGH 247 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 V P G C CG +GCLET+A+ +A++++ LK S ++ + T + A Sbjct: 248 IQVEPLGERCHCGNFGCLETIAANAAIEQRVLNLLKQGYQS-RVPLDDCTIKTICKAANK 306 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 G+ + ++ +G ++ +N+ N +I + G + L I + Sbjct: 307 GDSLASEVIEYVGRHLGKTIAIAINLFNPQKIVIAGEITEADKVLLPAIESCIN----TQ 362 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 + +L +G L A L I Sbjct: 363 ALKAFRTNLPVVRSELDHRS-AIGAFALVKRAMLNGI 398 >UniRef50_Q47NL3 Putative transcriptional repressor protein n=1 Tax=Thermobifida fusca YX RepID=Q47NL3_THEFY Length = 389 Score = 349 bits (897), Expect = 9e-95, Method: Composition-based stats. Identities = 79/396 (19%), Positives = 160/396 (40%), Gaps = 18/396 (4%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + +R N+ ++ L R ++ +AR +S +VSNI+++L + V Sbjct: 8 TPGSQAALRQANRERVIAALRRGGTLTQAEIARATGLSAASVSNIVRDLRAMGVV--SVR 65 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 E+ + G + + + ++ T + + + N E + P + Sbjct: 66 ETSSNGRRARAVTLQRPPGVLVAIDFTHSRLTVALGNTDGRVLQEESIAYDVSEDPVRGV 125 Query: 123 SE---IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + + ++ + +A AI G VDP TG+ + P L+E+ Sbjct: 126 RRAVWLTETLLTQARVDRSMVLGVAAAIPGPVDPATGLIGDITSMPHWAGFNPGAELQER 185 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 LG+ V VDND + ALAE + ++ + V +G+G+ ++ +++RG +G+I Sbjct: 186 LGLPVSVDNDANLCALAELTEGAARGLEHVVYVKVAHGVGAGVILGGRLFRGMNGNAGEI 245 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH ++ G VC CG GCLET+ L + + ++ + L+ A Sbjct: 246 GHIGLDERGQVCRCGNRGCLETLVGTPYLLDMLPQQGRVKHGASLV--------DLLEAA 297 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 Q G+P + + A+G + +N++N + + G GE L+ + R Sbjct: 298 QEGDPGCRRIIAEAGAALGRGVAVVVNMVNPQMVIVGGEIAEAGELLLDPMRRAMELGAL 357 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 ++ G+L + G + +++ Sbjct: 358 GNALT----GLRLVTGELGERAALRGALQVVLDSTF 389 >UniRef50_P76586 Uncharacterized protein yphH n=68 Tax=Enterobacteriaceae RepID=YPHH_ECOLI Length = 397 Score = 349 bits (897), Expect = 1e-94, Method: Composition-based stats. Identities = 397/397 (100%), Positives = 397/397 (100%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI Sbjct: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA Sbjct: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL Sbjct: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 GIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH Sbjct: 181 GIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS Sbjct: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR Sbjct: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI Sbjct: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 >UniRef50_A0KIG1 N-acetylglucosamine repressor n=151 Tax=Gammaproteobacteria RepID=A0KIG1_AERHH Length = 425 Score = 348 bits (895), Expect = 2e-94, Method: Composition-based stats. Identities = 81/395 (20%), Positives = 158/395 (40%), Gaps = 12/395 (3%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 N I+ N + L+ Q ++ +A L+Q++ +V+ I ++L + ++ Sbjct: 28 ANVDLIKQVNSAAVYRLIDLQGPISRVKIAELSQLAPASVTKITRQLIEHGLIKETSPQA 87 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEF-EYLQIDAPTP--QAL 121 T G + + + + ++ + + + + P L Sbjct: 88 STGGRRAISLTTIKHRFQFVSAKLGRGYLQLALYDLDGKELDQHITQVTEIEQQPVVDML 147 Query: 122 LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 L EI + + I++AL + G V+P +G+ P+ + + LLE Sbjct: 148 LREIGAFIDSQQDRSRN-LISIALTMPGLVNPESGMVIYTPKYQIRN-LALAKLLENHFN 205 Query: 182 IRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + V ND LALAE + S++ D +++V G GS + +++ G G+IGH Sbjct: 206 LPCYVGNDTRSLALAEHFFGESRDCMDSILVSVHQGAGSGIITKGKVFLGQNRNVGEIGH 265 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 V P G C CG +GCLET+AS A+ + + + +S+ + + +T ++ A + Sbjct: 266 IQVEPLGKRCHCGNFGCLETIASNEAIVDKVKELISRGHLSSLQE-KHITIQEVCKAAMA 324 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 G+ S ++ +G ++ +N+ N ++ + G A E I R + Sbjct: 325 GDELARSVIENVGEHLGRAVAITVNLFNPQKVLIAGEITAAEEILFPAIRRCVE----HQ 380 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + I + V G L A L Sbjct: 381 SLPSFHRGLPIVKARFQNQPTV-GGFALVKRALLE 414 >UniRef50_A9KTE3 ROK family protein n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KTE3_CLOPH Length = 381 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 73/390 (18%), Positives = 150/390 (38%), Gaps = 25/390 (6%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 + + IR N ++LE + + + +++ +++ ++ +S I+ + ++K VV I E Sbjct: 4 GSKELIRDINSKLVLETIIQNEPISRAAISKKLGLTKATISAIVSDFINDKLVVEIGSED 63 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 G + + +C+++ + I C +++ + + +L + Sbjct: 64 TGLGRKPILLSFHKKAGYAICVDIEVSRISCMISDLKGEQRSVKQIKTPSESNLVPVLID 123 Query: 125 IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184 + + + P I +A+ IHG V P + + L G+ V Sbjct: 124 LIQSMESEYEKTPYGLIGIAIGIHGVVHQNE--VLFTPYYN-LNGINLSEQLGSYFGVPV 180 Query: 185 MVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVN 244 ++N+ + AL EK +++ G+G ++N+Q+Y G +G+ GHTIV Sbjct: 181 FLENEANLSALGEKAYLPETYTSLANLSIHSGVGLGIILNKQLYTGYHGNAGEFGHTIVV 240 Query: 245 PDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPW 304 +G C CG GCLE AS AL K+ + L+ A++ EP Sbjct: 241 MNGRTCPCGNQGCLEQYASERALLKEYSE--------------DASLDDLLLAYEKKEPK 286 Query: 305 ITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGP 364 ++ N + + + N N ++ I + I ++ D+ Sbjct: 287 AMGVMEHFVNYMAVCVNNLQNTISPEIIIINSAFTNAYPELAEMIAKKVNNKLVDK---- 342 Query: 365 SVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + L +LG + V+ L Sbjct: 343 ----IPLIASNLKDHSILLGGITVLVKNFL 368 >UniRef50_C5RGV2 ROK family protein n=2 Tax=Clostridium RepID=C5RGV2_CLOCL Length = 393 Score = 348 bits (894), Expect = 2e-94, Method: Composition-based stats. Identities = 72/404 (17%), Positives = 147/404 (36%), Gaps = 28/404 (6%) Query: 1 MR-----ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEK 55 MR ++ + I+ N+ +L LLYR + K +A+ ISIP V + EL Sbjct: 1 MRNLTKIKKLDQETIKKINQNNVLYLLYRHDQLTKHDIAKKLGISIPTVVTNINELIELG 60 Query: 56 RVVNIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEY-LQID 114 V T G P+ +++ + +T + + N E + + Sbjct: 61 FVEEAGVGKSTGGRKPVIVKFLPDSRYSMGVVITKDYVRMVLTNLHFEIIKEVSISIDEE 120 Query: 115 APTPQALLSEIEKC---WHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVE 171 + ++ +++ + + + + ++ G V+ T + + ++ Sbjct: 121 LQSIDYIIEAVKEFQKNVCEELSIDENKILGIGFSLPGTVNEKTLILENAINLGIKN-ID 179 Query: 172 VKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRG 230 K V ++N+ A AE + + +++ GIG+ V N +Y+G Sbjct: 180 FKNY---DFNCPVYIENEANASAYAEYFVYPDKSNSKLIFVSITEGIGTGIVFNSLLYKG 236 Query: 231 SLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLT 290 + +G+ GH + DG C CG+ GC E AS AL K ++ Sbjct: 237 ANKRAGEWGHMTIVKDGKSCACGKNGCWEVYASSKALLKTYNKDTG---------LKRRN 287 Query: 291 TAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTII 350 +++ + VD + + N + I++ ++I + G + + I Sbjct: 288 ISEIFMELDE-DYKTQKVVDEYLEYLAEGIKNIILIMDPDKIVIGGEIA----FYEDYIK 342 Query: 351 RQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + + + K +I F +L V+G L V Sbjct: 343 EALNEKVYKPNAFFTAKDCKIEFTKLKANASVIGAALLPVMPLF 386 >UniRef50_C7QZA5 ROK family protein n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7QZA5_JONDD Length = 425 Score = 348 bits (893), Expect = 3e-94, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 154/389 (39%), Gaps = 14/389 (3%) Query: 16 CVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWL 75 V+L+ + ++ +A++ ++ VS ++++L V+ I T G Sbjct: 15 SVVLDAIRAAGTISRVGIAQVTGLTGATVSTVVRKLLDAHLVIEIGRAESTGGKPRVLLE 74 Query: 76 IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWH---RH 132 + P + + +++ +I V N +P +P ++ + + Sbjct: 75 LNPTARYAVGVHLDHGAITYAVTNLAGAPVARLARPGPGNASPADVVIRMADEINMLVES 134 Query: 133 RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVM 192 + D + L L G + G+ T P + L + + V+++ND Sbjct: 135 IGIARDKLLGLGLVSPGPLSSRAGMHLTPPFMRSWEDFPLDTQLADVAQLPVLLENDATA 194 Query: 193 LALAEKWQNN-SQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCD 251 A+ E W +E F + + G+G+ VIN YRG+ +G+IGHT N DG C Sbjct: 195 AAIGEYWSGGTQREESFAALYLGTGLGAGIVINGTAYRGTSGNAGEIGHTCANIDGPECW 254 Query: 252 CGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLT-----TAQLIAAWQSGEPWIT 306 CG GC E +A +A+ +A + + T A + A + G+ Sbjct: 255 CGARGCFEALAGPAAVVNEAYSDPRIVTAAALDTLGDHTPITQRFAAIARASRMGDTPSR 314 Query: 307 SWVDRSANAIGLSLYNFLNILNINQIWLYG-RSCAFGENWLNTIIRQTGFNPFDRDEGPS 365 ++RSA +G++ + N+L++ + L G A ++ I + F RD Sbjct: 315 QLLERSARYVGVAAQSVANLLDVRMLVLTGSSFAAASHIYVPAIRDTLAASFFARD---- 370 Query: 366 VKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 A + Q + +G L ++AQ Sbjct: 371 NHAVHVQLSQSAETAPAIGAAALVLQAQF 399 >UniRef50_UPI0001C31B1F ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31B1F Length = 404 Score = 346 bits (890), Expect = 7e-94, Method: Composition-based stats. Identities = 89/402 (22%), Positives = 167/402 (41%), Gaps = 23/402 (5%) Query: 1 MRAC---INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRV 57 MR + +R N+ ++++ L R +++ LAR +S VS ++ +L+++ V Sbjct: 1 MRRAAPSGSLASLRDRNRRLLVDELRRAGLISRAELARRTGLSRSTVSTLVADLQAQGLV 60 Query: 58 --VNIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDA 115 +D G + L ++ + V++ + + E Sbjct: 61 AEREVDGAGPQGGRPPVLLSLERAAGVALGIDFGKRHVRVIVSDLAHTVLADVERPMETE 120 Query: 116 PTPQALLSEIEKCWHRH---RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEV 172 + H+ + I + + G +D TG + P + Sbjct: 121 QSAPEGFEVAVALVHQALADAGVEQTDVIGAGMGVPGPIDISTGEVGSSAILPGWIGLRP 180 Query: 173 KYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGS 231 + + +LG+ V V+ND + ALAE ++ +DF + V GIGS V+ Q+Y G+ Sbjct: 181 REDMSARLGLAVRVENDANLGALAELTWGAGRDTQDFVYVKVASGIGSGLVLGGQLYTGA 240 Query: 232 LYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTT 291 +G+IGH++V+ G VC CG GCLET+AS +++ R + LT Sbjct: 241 GGIAGEIGHSMVDERGAVCRCGNRGCLETIASTRQIRELLRPARGA----------DLTI 290 Query: 292 AQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIR 351 ++IA + G+ + +A AIG+ + N+LN ++ + G A G+ L+ + Sbjct: 291 EEVIAHAREGDRASRRVIGDAARAIGVVVAQVCNVLNPAKVIVGGDLSAAGDVLLDPLRD 350 Query: 352 QTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 + + + +I G L R +VLG L + Sbjct: 351 EVSRHAV----PAAGGHVEIVPGVLGRRAEVLGAAALVLRDV 388 >UniRef50_C1XPR1 Transcriptional regulator/sugar kinase n=14 Tax=Meiothermus silvanus DSM 9946 RepID=C1XPR1_9DEIN Length = 777 Score = 346 bits (889), Expect = 8e-94, Method: Composition-based stats. Identities = 70/397 (17%), Positives = 135/397 (34%), Gaps = 22/397 (5%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + +++ N+ ILE L + ++ LAR ++ +S+++ +L SE V++ D Sbjct: 384 RKGDPLEMKRINRRAILEALKGSRSLTRAELARRLGLTKSTISSLMDQLVSEGLVLSRGD 443 Query: 63 E---SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ 119 G + P G L + + + + E+ Sbjct: 444 TLRPKSQLGRPGVEVGLNPAGAVALGAELGVENSVVLAVDWTGTLLFREEWGADPRTPLS 503 Query: 120 ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 L + + + P+ + L LA+ G VD G P W V L+ + Sbjct: 504 ERLERLTQVTRHALQRHPEA-LGLGLALPGVVD-ARGWLHYAPNLGWRD-FSVAEALQAR 560 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 L V ++ND A E + Q + + + G+G V + RG+ G++G Sbjct: 561 LPFPVHIENDANSSAAGEVFFTPRQGQ-LAYLMLGTGLGVGLVHAGTVLRGANGAFGEVG 619 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 H + C CGR CLET SL A+ + +++ Q Sbjct: 620 HW-LGSSPKRCRCGRVSCLETEVSLRAMLEHYHALGGKAK----------DFWEVLKQAQ 668 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 +G + A+G + N + ++ L G + + + + F Sbjct: 669 TGHRLAVESLAELGRALGRLIANLAVAYDPERVVLGGAGAEAWDYLQQPLRQAVEEHAFL 728 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 R + ++ +G L + + L Sbjct: 729 RQH----QRLEVQPSLFGHLAPAMGAAALVLHSFLAS 761 >UniRef50_C5CH51 ROK family protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CH51_KOSOT Length = 408 Score = 345 bits (885), Expect = 3e-93, Method: Composition-based stats. Identities = 87/399 (21%), Positives = 167/399 (41%), Gaps = 12/399 (3%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 ++ + I+ N+ +IL+ +Y K+ +++++A+ +S AV+ I EL + V+ Sbjct: 8 VKRRGSKHLIKEINEKLILKTIYENKKIDRASIAKFTGLSPAAVTKITAELINRGMVLEA 67 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 + G + P+ L + + +E + + + ++ P Sbjct: 68 GSAESSGGRKPILLSLNPKFGQFLGVKIGVGYVELVITDFTCTIVESARCDT-ESSDPGT 126 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 +++ I+ CW + R+ + + +A+ G VD G+ + W V + LL+E Sbjct: 127 IVNVIKNCWEKCRQEKQSILLGIGIAVSGVVDSKEGIVRDSFLLGWRD-VPIASLLKEVF 185 Query: 181 GIRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 V+V ND A++ W + VI + GIG + +I+ +I+ + G G+IG Sbjct: 186 KCEVLVMNDVDSFAMSHLWLGKAKDHSNTVVITLGVGIGGALIIDGKIHN-AKGGVGEIG 244 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQ----LDPEKLTTAQLI 295 H V DG C CG GCLE AS AL K+ +S+ + E L Sbjct: 245 HMTVVKDGAKCTCGSNGCLEAEASFGALAKKISSITESKKLKELYKSVKQSESSEIEYLR 304 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF 355 A + + A +G++L N +N+L + + + G + F E +LN I+ Sbjct: 305 EALKRDRKAFNHVFEEYAVLVGIALKNIINMLAPDYLLIGGEALEFQEKFLNKAIQYAQK 364 Query: 356 NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 N F + + L LG+ ++ ++ Sbjct: 365 NAFGK----LGEKVMFNVDDLGEVAWNLGVIFVLMDNLF 399 >UniRef50_C7MQX8 Transcriptional regulator/sugar kinase n=2 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MQX8_SACVD Length = 443 Score = 345 bits (885), Expect = 3e-93, Method: Composition-based stats. Identities = 78/394 (19%), Positives = 142/394 (36%), Gaps = 17/394 (4%) Query: 15 KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTW 74 +L+L+ + + R + + V+ + +L + + + G + Sbjct: 25 LATVLDLVRSGAARTRPEIGRRSGLGRTVVTQRVNQLMACGLLEEGALGPSSGGRAPREL 84 Query: 75 LIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRK 134 L + TSI V + + E A P+A+L +E+ Sbjct: 85 KFRAHAGVILAAELGATSINVGVVDLAGTVLAEHSEDADIAAGPEAVLERVEEVLDELLD 144 Query: 135 LWPDH-------TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVD 187 + + + G V+ TG P P V+ L + V VD Sbjct: 145 QVRAEQNDPDLTVWGVGIGLPGPVEFATGRPSAPPIMPGWDGYPVRDRLARRYNTPVWVD 204 Query: 188 NDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV-NP 245 N+ +AL E +++ RD + + GIG+ V ++RGS +G IGH V + Sbjct: 205 NEVNTMALGELRAGSARGQRDILYVKIGTGIGAGLVSGGTLHRGSQGCAGDIGHAAVSDE 264 Query: 246 DGVVCDCGRYGCLETVASLSALKK----QARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 VVC CG GCLE A +AL + A+ D +T A + A QSG Sbjct: 265 TEVVCRCGNIGCLEAYAGGAALARDGLSAAQEGRSRLLAEVLADTGTITAADISRAAQSG 324 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 + + R+ IG L ++ N + + G G+ L + + R Sbjct: 325 DRTSVELLTRAGRFIGGLLATLVSFFNPALVIIGGGVAGAGDLLLAAVRETV----YRRS 380 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + + +I L+ ++G ++ ++ Sbjct: 381 LPLATRELRIIRSTLNDRAGLVGAAFMVIDELFT 414 >UniRef50_Q5WCD4 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WCD4_BACSK Length = 403 Score = 344 bits (884), Expect = 3e-93, Method: Composition-based stats. Identities = 87/391 (22%), Positives = 164/391 (41%), Gaps = 14/391 (3%) Query: 9 QIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRG 68 Q+ N+ L L+ + +K+ +A+ Q+S + IL +L E V T G Sbjct: 2 QLHEVNRINALNLIRLRGPLSKNMIAKQIQVSPTTAATILNKLIDEGYVQEEGVGHSTGG 61 Query: 69 HSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKC 128 + P+ + + L++ +S+ N + E +Y Q+D+ +A + + K Sbjct: 62 RKPVLYRFNPDKSFIIALSLANSSVRIAALNLEGHVRSE-QYGQVDSLRGEAYIDFVMKT 120 Query: 129 WHRHRKLWP--DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMV 186 + D + +++ + G V G+ + V +K +E G+R V Sbjct: 121 LSEFIGRFEKLDECLGISIVVPGIVQAERGIVSYNAKLDLYD-VHLKQKVEAAFGLRTYV 179 Query: 187 DNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPD 246 DND + +AEK ++ ++ I+V G+GS +N IYRG +G+IGH V P Sbjct: 180 DNDMNAMMMAEKQFGTARYKEMLFISVGEGVGSGLSVNGSIYRGFSGSAGEIGHMSVLPG 239 Query: 247 GVVCDCGRYGCLETVASLSALKKQARVWLKSQP------VSTQLDPEKLTTAQLIAAWQS 300 G C CG GCLE + A+ + +Q S PE + + A + Sbjct: 240 GPACPCGNQGCLENYVNWPAIYSRILSAWLTQGVKTAIIESAAGRPEAIKPTDFVEAACA 299 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 G+P+ + V+ A ++ +++ N L++LN + L G + + R Sbjct: 300 GDPFALTVVEEMAESLAVAITNSLHLLNPQAVVLTGPHVQNNLPLFKRLNEKIN----SR 355 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVE 391 P + T++ L + +LG + ++ Sbjct: 356 ALNPIARHTEVKPASLETNKDILGALAVLLQ 386 >UniRef50_C7R1E2 ROK family protein n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7R1E2_JONDD Length = 402 Score = 344 bits (883), Expect = 4e-93, Method: Composition-based stats. Identities = 78/394 (19%), Positives = 148/394 (37%), Gaps = 21/394 (5%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + +R N+ I++ + + + LA +S VSNI++EL + V Sbjct: 7 TPGSQSSLRESNRTRIIDAIKQFGGLTQVELAGATGLSAATVSNIVKELTTLGVVQTSPS 66 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 G + +A + + +A++ S + + A L Sbjct: 67 TRS--GRRAQHVTLARTPGLVGAVQFGLRHMRVALADSSGSLLSDHQLPLGADHRADAGL 124 Query: 123 SEIEKCWHRHRK---LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + +A+A+ V+ +G+ + V V +++ E+ Sbjct: 125 DRAALLIADMMETFDAESAELQGVAVALPAPVEHSSGLITSPGIMRGWDNVAVAHVMSER 184 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 +G V V N M AL E Q + + I V IG++ +IN +++ G+ +G+ Sbjct: 185 IGKPVYVANSSNMGALGELRQGAAAGAQHTLYIQVGQRIGAALIINGELFWGANGSAGEF 244 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GHT +PDG +C CG GCLETVA + L + RV +T ++ Sbjct: 245 GHTTTDPDGQICRCGNRGCLETVAGGNVLLEALRVSHGV-----------MTLKDMMRYA 293 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 + G+ + + AIGL+ N N+ N ++ + G G L+ + Sbjct: 294 RDGDLGCIRAIADAGRAIGLAAANLCNVFNPERVVVGGDLAHTGSILLDPLRETIERFSL 353 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEA 392 + + I G L +++G ++ Sbjct: 354 ----PSTAECITIVPGSLGADAEMIGTITYALDR 383 >UniRef50_Q82LB9 Putative ROK-family transcriptional regulator n=1 Tax=Streptomyces avermitilis RepID=Q82LB9_STRAW Length = 424 Score = 344 bits (883), Expect = 4e-93, Method: Composition-based stats. Identities = 79/398 (19%), Positives = 160/398 (40%), Gaps = 12/398 (3%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 ++ IR N+ +L + + ++ LA +S+ V+ ++ EL + + E Sbjct: 14 TSRDIRTANRYEVLRQIIAKSPTSRQELAAATGLSLATVATLVGELLDLGMLTEVGFEDS 73 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPT-PQALLSE 124 G G + G + +++ T + ++ + L + + P+ ++ Sbjct: 74 AGGRPRGLVAVNSGGGALIGVDIAETYVRVELFDLGLGQLARADEDMRPGESRPEQVVGH 133 Query: 125 ---IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + + + +++ GQVD G+++ P W V + LL E + Sbjct: 134 VAAAVGSVVAQAGVDGARVLGVGVSVPGQVDRDRGIAEYAPNWDWHD-VPLLSLLAEHIT 192 Query: 182 IRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + +DN A+AE W ++ R D V+N+ G+G+ + ++RG +G+ GH Sbjct: 193 HPLYLDNPLRACAVAELWFGAARGRGDAVVVNLGTGVGAGLALGGALHRGVSNSAGEWGH 252 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 T + DG +C CG +GC+ET + + R + P+ D + T L + Sbjct: 253 TTLVLDGRLCHCGNHGCVETYVGAPGIMQNLRELSPADPLLHPGD-QTATIDALARGVAA 311 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCA-FGENWLNTIIRQTGFNPFD 359 +P V +A +G + + +N+LN + L A GE L+ + + Sbjct: 312 RDPVALKVVRDTARYLGAGIADLVNLLNPEVVVLSSWVAATLGEPLLDEVREAVARHALR 371 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 R +T+I + LG +E L+ + Sbjct: 372 R----PFASTEIVLSPIPTDPVCLGAATFALEGALQSV 405 >UniRef50_C5CNA8 ROK family protein n=1 Tax=Variovorax paradoxus S110 RepID=C5CNA8_VARPS Length = 389 Score = 343 bits (882), Expect = 5e-93, Method: Composition-based stats. Identities = 75/386 (19%), Positives = 154/386 (39%), Gaps = 11/386 (2%) Query: 17 VILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLI 76 +LE + ++ +A S + ++ L + + + + G + + Sbjct: 2 RLLETTFWSAGGSRHAMAEQLGFSKSKANALIAGLVEQGLLAEAGLQRSSGGRRAENLQL 61 Query: 77 APEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHR--- 133 + +++ TS++ V LS + + P +L+ + Sbjct: 62 HAGLGVLVGIDIGATSLDVAVLRPDLSVLAQHDEPADVREGPAVVLARVRVLMRELLARC 121 Query: 134 KLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVML 193 P + + + + + G V+ G P P ++ L E V VDND ++ Sbjct: 122 GHGPKNVLGIGIGVPGPVNFEIGQLVNPPLMPAWDSFSIRDYLREDYAAPVFVDNDVNLM 181 Query: 194 ALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCG 253 AL E W+ +F VI + GIG V + ++YRG+ +G +GH V+ DG C CG Sbjct: 182 ALGELWRLKRSLNNFLVIKIGTGIGCGIVCHGEVYRGAAGSAGDVGHICVDQDGPRCHCG 241 Query: 254 RYGCLETVASLSALKKQARVWLKSQPVSTQLD----PEKLTTAQLIAAWQSGEPWITSWV 309 GC+E +A+ A+ + A ++ + + ++ + A ++G+ + Sbjct: 242 NVGCVEAMAAGPAITRMAVQAAEAGESAMLAECLRVHGRIDAIDVGQASRAGDTAANGII 301 Query: 310 DRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKAT 369 R+ N IG L + +N N + +++ G G +L + + + R S + Sbjct: 302 QRAGNLIGQMLASVVNFFNPSHVFIGGGITRIGPLFLAAVRQSV----YQRSLALSTRHL 357 Query: 370 QIGFGQLSRAQQVLGIGYLYVEAQLR 395 +I + L ++G G L + L+ Sbjct: 358 EIQYTPLGVQGGLVGAGVLAMHETLK 383 >UniRef50_B4V8E4 ROK-family transcriptional regulator n=5 Tax=Streptomyces RepID=B4V8E4_9ACTO Length = 425 Score = 343 bits (881), Expect = 7e-93, Method: Composition-based stats. Identities = 83/399 (20%), Positives = 152/399 (38%), Gaps = 11/399 (2%) Query: 3 ACINNQQIRHHNKCVILELLYRQ-KRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 A Q IR N+ L ++ ++ +A +S V+N++ EL + Sbjct: 11 AKRTAQDIRRRNRFDALRCVFAAPGPVSRQEIAAATGLSFATVANLVAELLEAGVLREAG 70 Query: 62 DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAP-TPQA 120 E G + E + ++V TS++ ++ + L+ PQ Sbjct: 71 HEDSKGGRPRARLAVNAERGALVGIDVAETSVQVELFDLALTVLRGVRLPLPQTDVRPQD 130 Query: 121 LLSEIEKCWHRHRKLWPD--HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 ++ I + + +++ G V+ GVS P W V ++ LL E Sbjct: 131 VVDAIVAGVEGLSDSAVEAPRILGAGVSVPGLVEREGGVSVFSPYWSWRD-VPLRSLLAE 189 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 +L + + +DN +AE W +E D V+ + G+G+ ++ +YRG+ +G+ Sbjct: 190 RLPMPLYLDNPLKAGTVAEMWFGAGREVDDLVVLTLRAGVGAGIAVDGALYRGATNSAGE 249 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 GHT + G C CGR GC+E S + R P+ + +T ++ A Sbjct: 250 WGHTCLVRGGRACRCGRQGCVEAYVSSRGIADTVRELDAESPLLDPDEDVVVT--KVARA 307 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNP 357 G+ V R+A +G + + LN+ N + L G E ++RQT Sbjct: 308 AAEGDAVAAEAVARTARYLGEAAADLLNLFNPQTLVLGGWVA---ERLGEPLLRQTRDVI 364 Query: 358 FDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 +++A + LG +E L Sbjct: 365 AAHALPATLQALTFQRSTVPDNPVTLGAATFALEGFLDD 403 >UniRef50_C7PY53 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PY53_CATAD Length = 422 Score = 341 bits (876), Expect = 3e-92, Method: Composition-based stats. Identities = 83/399 (20%), Positives = 143/399 (35%), Gaps = 34/399 (8%) Query: 15 KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES---------- 64 + IL+ L R +++ L R ++ VS+++ +L S V D Sbjct: 23 RVRILQALTSHARLSRADLVRHTGLARTTVSSVIFDLISAGLVRESPDVRENSDTAAAAA 82 Query: 65 ------QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP 118 Q G + PE + + L+V + V + +P+ + P Sbjct: 83 AGAAPGQRTGRPPLLLRLEPEAAYAVGLDVGHDHVRAIVTDVVGTPRWDRTEALAVDDDP 142 Query: 119 QALLSEIEKCWHRH---RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 + L + + P + L L I VD TG P Sbjct: 143 RRALDTAVRLIAEAVKDTAVPPHKILGLGLGIACPVDKTTGGLHAEGIMPGWVGTRPADD 202 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYG 234 L E+ G+ + ND LAE+ ++E + + + GIG+ + ++ G Sbjct: 203 LAERTGLPTQIINDANAGVLAERRFGAAREATNVVYVRLAAGIGAGMMSEGRMLLGHHGL 262 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQL 294 +G++GH +V +G VC CG GCLETVAS +A+ S L Sbjct: 263 AGELGHVMVELNGAVCRCGSRGCLETVASPAAIAGLLARSWGQPADSI----------DL 312 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTG 354 + G+ V+ + A+G +L + +LN + + G GE L I R Sbjct: 313 PELLRRGDRGALRVVEDAGEAVGRALSAAVQLLNPQLVVIGGDLAEAGEALLEPIRRTLR 372 Query: 355 FNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 G + +I L + V G L +++ Sbjct: 373 R----GTMGSLNQRLRIVPSTLGDSAGVRGAAALVLDSV 407 >UniRef50_A6TUP6 ROK family protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TUP6_ALKMQ Length = 392 Score = 341 bits (875), Expect = 4e-92, Method: Composition-based stats. Identities = 68/396 (17%), Positives = 159/396 (40%), Gaps = 19/396 (4%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 + QI+ N+ I+ ++ ++ K +A ++SIP ++ + +L E V Sbjct: 6 TFSQDQIKEINRSNIINMIKQKYEITKHEIAVALKLSIPTITTNINQLIEEGLVEEAGVG 65 Query: 64 SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLS 123 + T G + +++ ++V+P + + + + E + + + + +L Sbjct: 66 NSTGGRKPMILKLVENARFSVGVDVSPDKVRILLIDLNNTIIDEASFDYVKDLSFKGVLD 125 Query: 124 EIEKCWHRHR---KLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 E++ R + + + + +++ G VD + + P + ++ L Sbjct: 126 EVKTEIERFMTQNNISKNKILGVGISLPGLVDEDRLILENAPNIGVRD-FNFQE-FQDSL 183 Query: 181 GIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 +RV ++N+ + A AEK + R+ +++ G+G+ ++N+ IY+ S +G+ G Sbjct: 184 QLRVFIENEANIAAYAEKEIGKTVNMRNVVYVSITEGVGTGIIVNQHIYKSSNKKAGEFG 243 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 H ++ + C+CGR GC E AS AL + + T ++ + Sbjct: 244 HMRISDEPRPCNCGRTGCWELYASKKALSRYYEESTGLKVS---------TLDEIFSEES 294 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 P + + R + + + + N + LN + + G + + L I Sbjct: 295 FNMPSVKEAIGRYIDCLFIGIENIILGLNPEFVIIGGELGKYEKEMLTLI----NGRNNM 350 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + + T++ F L ++G L +E Sbjct: 351 KSSFVEYEGTKVVFSALKDKGSLIGAALLPLEDLFN 386 >UniRef50_C6Y2I3 ROK family protein n=4 Tax=Sphingobacteriales RepID=C6Y2I3_PEDHD Length = 408 Score = 340 bits (874), Expect = 5e-92, Method: Composition-based stats. Identities = 75/386 (19%), Positives = 151/386 (39%), Gaps = 15/386 (3%) Query: 18 ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIA 77 ++ A + L + +S P ++N+L +L ++ + + T G + + Sbjct: 28 VISYFANIGNATIADLCKELNLSAPKITNLLSDLIADGLIKDYGKVESTGGRKPNLYGLV 87 Query: 78 PEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRK--- 134 P+ + + +++ I ++N + E + + L + K + Sbjct: 88 PDSAFFIGVDIKQNHINIGLSNLQKNLIRITEKIPYHLDNNKESLEALCKLINDFIGELT 147 Query: 135 LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLA 194 + + + L + + G+++ TG + + ++E K+GIRV ++ND +A Sbjct: 148 IPKEKLLGLGINLSGRINYATG---YSYSFFYFNEEPLSKIIESKIGIRVFLENDSKSMA 204 Query: 195 LAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCG 253 E + E++ +N+D+GIG ++N Q+Y G SG+ GH + + ++C CG Sbjct: 205 YGEFSAGVVEAEKNVLFLNLDHGIGLGILVNGQLYYGKSGYSGEFGHIPMFDNEIICRCG 264 Query: 254 RYGCLETVASLSALKKQARVWLKSQPVSTQ----LDPEKLTTAQLIAAWQSGEPWITSWV 309 + GCLET AS AL + + L S D E L +I A + + Sbjct: 265 KKGCLETEASGWALTRMFKERLSEGSSSILSQNNTDTEDLKMEDIINAAIHDDVLAIELI 324 Query: 310 DRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKAT 369 + + +G + +N+ N + L G A E I + T Sbjct: 325 AKIGDNLGRGIALLINLFNPELVILGGSLAATEEYIRLPIKSAINKYSLS----LVNQDT 380 Query: 370 QIGFGQLSRAQQVLGIGYLYVEAQLR 395 + +L ++G L L Sbjct: 381 NLKMSKLGERAGIIGACLLVRNRLLS 406 >UniRef50_D2ASC3 Transcriptional repressor of the xylose operon n=2 Tax=Streptosporangium roseum DSM 43021 RepID=D2ASC3_STRRD Length = 397 Score = 340 bits (874), Expect = 5e-92, Method: Composition-based stats. Identities = 84/393 (21%), Positives = 153/393 (38%), Gaps = 25/393 (6%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 + +R N+ V+L LY + ++ L+ L +S +VSN+ +L ++ +V Sbjct: 10 RDLRRGNRAVLLRTLYFEGPTSRHELSGLTGLSAASVSNVTGDLIADGIIVEAGLVESDG 69 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDA-PTPQALLSEI- 125 G + PE + + ++V T + ++ + ++ + + +Y ++ I Sbjct: 70 GRPRVLLRVDPEFGYAIGVDVGETHVRVELFDLDMNERAKADYPLRPGRHDVDLVVRHIL 129 Query: 126 --EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIR 183 + P + + + + G V+ W V + LL + Sbjct: 130 SGIDAVLAAGGVDPARVLGVGIGVPGIVESGPEALIHAQTFGW-DAVPLGTLLRAGTSLP 188 Query: 184 VMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 + VDN + AE W + R V + G G+S + + YRG+ +G+ GHT Sbjct: 189 LYVDNGAKTMGQAELWFGAGRGTRHTIVALIGSGAGASIITDGIAYRGANSSAGEWGHTK 248 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 + G C CG GCLE ++ +A + + A L +SG Sbjct: 249 IMMGGRACRCGGRGCLEAYIGAESILDRAGLSAEIADEQ----------AVLAELVRSGG 298 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSC-AFGENWLNTIIRQTGFNPFDRD 361 P +D +A+ +G L N +N+ N +I + G + G + L I R N + Sbjct: 299 P----VIDETADYLGAGLANLINLFNPERIVIGGWAGLLLGRHHLTRIRRSAADNSLTQP 354 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 G + I G+L LG L VE L Sbjct: 355 YGTA----SIVLGRLGPDAVALGAATLVVEEFL 383 >UniRef50_Q0FFU4 Xylose operon repressor n=6 Tax=Rhodobacterales RepID=Q0FFU4_9RHOB Length = 421 Score = 339 bits (872), Expect = 7e-92, Method: Composition-based stats. Identities = 80/390 (20%), Positives = 152/390 (38%), Gaps = 14/390 (3%) Query: 15 KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD--ESQTRGHSSG 72 + I EL+ R ++ +AR IS +V+ + EL S+ + +++ +RG Sbjct: 34 RQQIFELVRATGRIARAKIARTLDISPGSVTALTAELISDGFLREVEETSRETSRGRPPV 93 Query: 73 TWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQI-DAPTPQALL---SEIEKC 128 + P+ + + + ++ + + + + D + LL I + Sbjct: 94 ALELVPDALYVIGVKLSDELHTATLTDFGGNALASASQITTADKKSADELLTETEAIIRK 153 Query: 129 WHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDN 188 + K+ + + I G V+ TGV P + + V +DN Sbjct: 154 VCKSAKISQKKISAIGVGISGIVNYETGVVAWSPLLEELD-TPLGDIFSTYFKTPVCIDN 212 Query: 189 DCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDG 247 D +L LAE W + +F VI +++G+G FV + +++RG+ ++GH+ V DG Sbjct: 213 DANVLTLAELWFGAGRALSNFAVITIEHGVGMGFVSDNRLFRGAHSMGLELGHSKVQLDG 272 Query: 248 VVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITS 307 +C CG+ GCLE + AL ++A L + P S + D L + G+ Sbjct: 273 ALCRCGQRGCLEAYLADYALAREASTALIT-PSSKRQDLNDY-LKSLYEMAKLGDQASLK 330 Query: 308 WVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVK 367 R+ + ++L N +++ + I L G+ E + + S Sbjct: 331 IFKRAGRYLAVALSNIIHLFDPKLIILSGKPMQ-YEFLYD---EEMQIEMRSLALYKSRF 386 Query: 368 ATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 TQI G L + + I Sbjct: 387 DTQIEIQSWGSMVWARGATALALTELTKTI 416 >UniRef50_Q1IZX8 ROK domain protein n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1IZX8_DEIGD Length = 408 Score = 339 bits (872), Expect = 8e-92, Method: Composition-based stats. Identities = 86/378 (22%), Positives = 143/378 (37%), Gaps = 21/378 (5%) Query: 32 TLARLAQISIPAVSNILQELESEKRVVNIDDESQT----------RGHSSGTWLIAPEGD 81 LAR +S A+S+I+ EL V G + + Sbjct: 2 DLARELGLSRSAISSIVTELMDAGLVREAGQRVAGNGASRGAGGPVGRRATLLSLNARAA 61 Query: 82 WTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA---LLSEIEKCWHRHRKLWPD 138 L +++ + + + + P A LL E+ + + + Sbjct: 62 HLLAVDLGASHARVDLLDLRCTTLATRTAQHDILRGPAATYALLKELAQAVLEEAGVPRE 121 Query: 139 HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEK 198 + + G VD TG P P V LE L + VDND + ALAE Sbjct: 122 RVAAVGAGVPGPVDYATGCVVQPPNMPGWDGENVMAGLERVLDLPTRVDNDANLGALAES 181 Query: 199 WQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGC 257 + D + V GIG+ ++ +++RG G+G+IGH +N G V G G Sbjct: 182 RFGVHRGAADLIYVKVATGIGAGVLLGGRLHRGVRGGAGEIGHISINEQGPVGRSGNPGS 241 Query: 258 LETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIG 317 LE+ A+ L + AR ST DP LT A LIA + +P + + + +G Sbjct: 242 LESYAAAQVLLETARARRAGGVPSTLPDP--LTLADLIAFANT-DPLARAVWAEAGHHLG 298 Query: 318 LSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLS 377 +++ LN+ N + + + GR GE +L+ + + R + +I L Sbjct: 299 VAISTALNLFNPSAVVIGGRLAQAGEVFLHAVRE----SALSRTMRINADRARIDLSTLG 354 Query: 378 RAQQVLGIGYLYVEAQLR 395 VLG G + ++ Sbjct: 355 EGAGVLGAGAMLLDHLFT 372 >UniRef50_A8VRA6 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VRA6_9BACI Length = 387 Score = 338 bits (869), Expect = 2e-91, Method: Composition-based stats. Identities = 74/407 (18%), Positives = 148/407 (36%), Gaps = 45/407 (11%) Query: 7 NQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQT 66 +++ NK +IL+ +Y+ + +++ LA++ ++ VSN++ EL E + + + Sbjct: 5 QLEVKQQNKKLILKTVYQLEPISRADLAKVLSLTKATVSNLVDELVQEHYLEQVGLGKSS 64 Query: 67 RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIE 126 G I + +T+ +++ I + + + D + + IE Sbjct: 65 GGRRPLMLKINEKAGYTISVDIGVNYIRSILTDLKGGIMKKA-VETTDTNVYEDTMRYIE 123 Query: 127 KCWHRH---RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIR 183 + P + + + G VD G + P W +++ E + Sbjct: 124 TMVNNLINDMDDAPFGLVGIGFGVPGLVDSD-GTVISTPNLDWQES-DIRKRFEAAFDVH 181 Query: 184 VMVDNDCVMLALAEKWQNNSQERDFC--------------VINVDYGIGSSFVINEQIYR 229 V+V+N+ A EK D + +YR Sbjct: 182 VIVENEANAGAFGEKSFGEGISSDHFIYISGGIGIGVGLIF-------------DGVLYR 228 Query: 230 GSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKL 289 G +G++GHTI+ DG+ C CG+ GC E AS + K+ + +L Sbjct: 229 GRNGFTGELGHTIIQMDGLTCSCGKKGCWERYASELYILKEYEKL-------KGMPWHQL 281 Query: 290 TTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 T + + + + + + R+A + L N +N N +I + R E ++ + Sbjct: 282 TLEEAVTEAAA-DEDVRAIFHRAARHFAIGLTNIINSFNPEKIIVGNRLTQA-EQYMLPV 339 Query: 350 IRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 I + P K I F + VLG+ +E + Sbjct: 340 IEEVIAET---AISPIAKGVGIHFNNTDQLATVLGLSAFSIERFFDR 383 >UniRef50_Q47PH9 Putative xylose repressor n=1 Tax=Thermobifida fusca YX RepID=Q47PH9_THEFY Length = 417 Score = 338 bits (868), Expect = 2e-91, Method: Composition-based stats. Identities = 78/398 (19%), Positives = 145/398 (36%), Gaps = 18/398 (4%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE-SQT 66 Q +R N ++L + +++ +A ++ VS+++ EL V + Sbjct: 12 QAVRETNLGIVLRTIRTSAPCSRAVVAASTGLTKATVSSLVAELIDRGLVCETGLVNERR 71 Query: 67 RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANA-CLSPKGEFEYLQIDAPTPQALLSEI 125 G I L L V + + A P+ ++ Sbjct: 72 VGRPGMMLTINGSTLVALGLEVNVDYLALAALDLLEREVLTRHVAFDARAAGPEECAKQL 131 Query: 126 EKCWHRHRK---LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL-- 180 + L + +++AI VD +G P W ++ L E L Sbjct: 132 KTLLLETVADPLLRDRPLLGVSVAIPALVDVSSGTVTNAPNLGWRN-FPLQQRLTELLAD 190 Query: 181 ----GIRVMVDNDCVMLALAEKWQNN-SQERDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 G V VDND + A+AE + ++ D + + GIG+ ++N + RG+ + Sbjct: 191 TPLAGAPVRVDNDANLGAVAEYRGGHLARTMDLVYLTGEVGIGAGVLMNGEPLRGASGFA 250 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLI 295 G++GH + DG C CG+ GCLE +A L ++ ++A L + E L + Sbjct: 251 GEVGHIPLLKDGPACACGQDGCLEALAGLDSILRRAVPDLVPEGPVRGSVVESLVAETV- 309 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF 355 +SG+ ++ + +G + +N+LN + I L G L + Sbjct: 310 RRAESGDATAVQALEDAGEWLGRAAATLVNLLNPSAIILGGYFVPLSPWLLPSCREAMAA 369 Query: 356 NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 F P+ +I L + G ++A Sbjct: 370 YSFA----PNSGNCRIEPSTLGLSAAARGGAMALIDAL 403 >UniRef50_A9WVF3 Transcriptional regulator, ROK family n=4 Tax=Micrococcaceae RepID=A9WVF3_RENSM Length = 426 Score = 338 bits (867), Expect = 3e-91, Method: Composition-based stats. Identities = 80/398 (20%), Positives = 161/398 (40%), Gaps = 8/398 (2%) Query: 2 RACINNQQIRHHNKCVILELLYRQK-RANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 R N ++ N VIL+ + R ++ LA + ++ VSNI + L + +V Sbjct: 19 RRGTNLPRMGDFNLSVILDAIRRSPEGLSRVELAGIVGLAAQTVSNICRRLLDQNLIVEA 78 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 G + P G + + +++ P + + + +L PQ Sbjct: 79 GKYGSGPGKPRTILRLNPGGMYAVGVHLDPVETNYALLDLTGAVVTTRTHLTQPDAEPQQ 138 Query: 121 LLSEIEKCWHR---HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 + + + + + + L +A G +D TG P P VE++ L Sbjct: 139 TIDAMAEEIESIISEQNIERNKIAGLGIAAPGPIDGATGAIVEPPHMPGWGTVELRERLH 198 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNN-SQERDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 + + + V++D D A+AE W S F + + GIGS V+++++ RGS +G Sbjct: 199 KAVELPVLLDKDVTAAAVAEIWAGGLSGSGSFIFVYIGTGIGSGLVLDDEVVRGSSGNAG 258 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 ++GH I +PDG CDCG+ GC++ + +A + + ++ A L Sbjct: 259 EVGHIIADPDGPDCDCGKRGCVKVTCMPENIVAEAAAAGFKAVLDNKGKSLQVQMAALSE 318 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 A +G+ +D +A ++ N+L+++ + G F +++ T + + Sbjct: 319 AALAGDAAAQKILDLAAERFATAVSVQANLLDVDHVVFGGP---FWKHFEPTFLAKLPQR 375 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 +R V + ++ + +G L +E Sbjct: 376 INERSATSKVHSVEVVGTGVGSDVGAVGAACLVLEDTF 413 >UniRef50_D2PL28 ROK family protein n=18 Tax=Actinomycetales RepID=D2PL28_9ACTO Length = 404 Score = 337 bits (865), Expect = 5e-91, Method: Composition-based stats. Identities = 86/400 (21%), Positives = 145/400 (36%), Gaps = 15/400 (3%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + +R N+ VIL +YR ++ L R +S +VSN++ EL E V Sbjct: 4 RRTTVRDMRRSNRSVILTSIYRHGPLSRYELGRETSLSAASVSNLVGELLDEGVVEEAGS 63 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYL-QIDAPTPQAL 121 G +AP + + V T + ++ + ++ + P P+ Sbjct: 64 VESDGGRPRVLLRVAPTFGYVVGAEVGETRVRVELFDLAMNVVATVVSPIETPKPAPELA 123 Query: 122 LSEIEKCWHRH---RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 + + + + + + L +A+ G V+ W V + +L Sbjct: 124 VRSVLQGLDEVIAGAGVAKERVLGLGVAVAGVVEGPADAVVHAQTLGW-DGVPLGAMLAA 182 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 I + VDN L AE W + D V V G+G++ V YRG+ +G+ Sbjct: 183 GTEIPIQVDNGANTLGQAEMWFGAGRGATDAVVALVGSGVGAALVTGGTSYRGTRSSAGE 242 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 GHT + G C CG GCLE A+ ++ R S D E+ L+AA Sbjct: 243 WGHTTIMYGGRQCRCGALGCLEAYVGAEAVLERYREA---GGPSAATDDEEAEFVALLAA 299 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIW-LYGRSCAFGENWLNTIIRQTGFN 356 + V+ + +G N +N++N +I GE +L + G + Sbjct: 300 VGT-SEVAAKVVEDTIGYLGAGFANLVNLVNPERIVLGGWAGLLLGERYLPQLREAVGRH 358 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 R I +L G L V LR+ Sbjct: 359 ALRR----PYAQVAIELCELGSDAVARGAATLPVLRLLRE 394 >UniRef50_A6LW15 ROK family protein n=5 Tax=Clostridium RepID=A6LW15_CLOB8 Length = 382 Score = 336 bits (864), Expect = 6e-91, Method: Composition-based stats. Identities = 80/394 (20%), Positives = 151/394 (38%), Gaps = 20/394 (5%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 +N+ +I+ N+ I+ LL ++ K ++R+ ISI VS + EL+SE V ++ Sbjct: 4 VNHSKIKETNRKKIIALLLKKNEITKLDISRILDISITTVSTNITELKSEGIVEDVRSLE 63 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 T G + + +++ + +TP I+ + N + + +++ Sbjct: 64 STGGRKAIAIKLNENCRYSIGVALTPNHIKISLVNIKKKVIESMRVRHN-SDGIENIINL 122 Query: 125 I---EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + + L + + + +++ G VD G+ + +K E L Sbjct: 123 LNENIDLLMKKYNLCSANLLGIGISLPGTVDFKEGIIKYSYLLGAKD-FNLKEKFE-YLD 180 Query: 182 IRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 I V VDN+ + A E R+ +++ G+G +IN +IYRG SG++GHT Sbjct: 181 IPVYVDNEANLSAYYEFLNKRDILRNLLYVSITEGLGLGIIINGKIYRGDNNSSGELGHT 240 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 + DG C CG GCLE S+++L S + + Sbjct: 241 KIAIDGKKCKCGARGCLEAYTSMNSLIDSYNEANSSNIS---------DIDEFEERYNQN 291 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 + ++ + L L N + I + + I + G N LN I + + Sbjct: 292 DKDAHDVLNDYLKTLSLGLSNLVMIFDPSSIVIGGDI----NNLLNDKIDMLKKEVYKDN 347 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + I +LG + +E L Sbjct: 348 LFTNENNCSISIASFKE-SYLLGAAMMPIEEFLE 380 >UniRef50_D1BAX4 Transcriptional regulator/sugar kinase n=2 Tax=Actinomycetales RepID=D1BAX4_SANKS Length = 410 Score = 336 bits (863), Expect = 8e-91, Method: Composition-based stats. Identities = 93/401 (23%), Positives = 170/401 (42%), Gaps = 12/401 (2%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + +R ++ +L + + A + L++ +S+ VS +++E + V Sbjct: 2 TRRTARDLRSDSRSAVLRAFFSLRTATRQELSQHTGLSVATVSTLVKEFLTAGVVHVEAV 61 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDA-PTPQAL 121 S G + P + + ++V T +E V + L P+G + +PQ + Sbjct: 62 VSSGVGRPLEQLRLDPSRGYIVGVDVAETYVETTVFDLSLDPRGTVSVPLDEHQNSPQYV 121 Query: 122 LSEI---EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 + I + + + +++ GQV P GVS P W V +K LL Sbjct: 122 VDGIRLAVHGVLALAGVSTSSVVGVGVSLPGQVQPDLGVSVFAPNWAWHD-VRIKELLTA 180 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 +LG+ V VDN +A+AE W + RD ++N+ G+GS VIN ++ RG +G+ Sbjct: 181 ELGMHVHVDNPLKAIAVAELWFGAGREHRDLAIVNLGTGVGSGLVINGELVRGVSNNAGE 240 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 GHT++ DG +C CGR GC+E ++ +K P Q + + + Sbjct: 241 WGHTLLALDGRLCRCGRQGCVEAYVGVNGMKATLSEIQPDHPALLQQEQRRF-VDAVYEG 299 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGR-SCAFGENWLNTIIRQTGFN 356 +G+P VD +A + SL + +N++N + L G G+ + + + Sbjct: 300 VVAGDPVFVELVDETARYLAASLGDLVNMINPEHVVLTGWTVARLGDWLIPLVRAKIP-- 357 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 D SV + L+ + LG+ L +E L + Sbjct: 358 --DAALRSSVAVLTVSASSLASSTVALGMSTLTLEHFLAAV 396 >UniRef50_A6CIT4 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus sp. SG-1 RepID=A6CIT4_9BACI Length = 372 Score = 336 bits (863), Expect = 8e-91, Method: Composition-based stats. Identities = 71/404 (17%), Positives = 141/404 (34%), Gaps = 39/404 (9%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ + + I+ N+ +IL + Q+ +++ L+R +S VS I+ EL +K ++ Sbjct: 1 MKKG-DYELIKQINRRLILSAVRNQQPVSRAALSRELGLSKSTVSGIVDELIKKKLIIEE 59 Query: 61 DDESQT--RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP 118 T G P+ + + +++ T I V + + E+ P Sbjct: 60 GQGESTKEGGRKGIQLFFNPKCSFGIGVDIGGTKILLVVTDLDGEIIFKEEHPTEK--NP 117 Query: 119 QALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 + ++ I R D + + + ++ G+ P W L+E Sbjct: 118 EKIVKLIYNFIDR-SNTPLDLISAMGIGVPSIINTKEGIVVDAPALKWRD-YRFLDFLKE 175 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 K ++ND E ++ D I + G+GS+ N QI G+ + +G+ Sbjct: 176 KFEFPCFLNNDVNCAMYGELRFGAGRDCSDLLFIAIGTGVGSAVYANGQIVEGATFSAGE 235 Query: 238 IGHTIVN----PDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQ 293 IG+ V+ +G G +G E S +AL K +T + Sbjct: 236 IGYL-VDKSDVENGYKRVPGEFGAFENKTSGTALTKY-----------------GMTPKE 277 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT 353 L + G+ + + +++ N +LN +++ + G + I R Sbjct: 278 LFDQYYQGDREAQEIIKDFTLNLAIAIANASCLLNSSKVIIGGGVSRSMVGIIQHIQR-- 335 Query: 354 GFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 P +I Q +G E L + Sbjct: 336 ----LANQWTPFF--VEIESSQFQTDAGAIGAVAYAFE-MLESL 372 >UniRef50_D1BCW6 Transcriptional regulator/sugar kinase n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BCW6_SANKS Length = 429 Score = 336 bits (862), Expect = 1e-90, Method: Composition-based stats. Identities = 82/398 (20%), Positives = 157/398 (39%), Gaps = 18/398 (4%) Query: 11 RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHS 70 R + VI++ + ++ L ++ VS +++ L + VV T G Sbjct: 6 RSASTSVIVDAIRASGTVSRVGLTVTTGLTGATVSTVVRRLIDDGLVVETGRAESTGGKP 65 Query: 71 SGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWH 130 + P + + +++ SI C V + + + +P +L E Sbjct: 66 RVLLELDPTARYAVGVHLDHASITCTVTDLAGTSVALSTHPGPGTRSPAEVLVETAAEVD 125 Query: 131 RH---RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVD 187 R + + + G + G+ +T P+ T + L G+ V+++ Sbjct: 126 RLVDEAGVDRSRVLGIGFVAPGPLTSDGGMHRTPPEMRAWTDYPITSELGRLTGLPVVLE 185 Query: 188 NDCVMLALAEKWQNN-SQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPD 246 ND A+ E W E F V+ + G+G+ V++ YRGS +G+IGHT ++ D Sbjct: 186 NDATASAIGEHWAGGTGTENSFAVLYMGTGLGAGLVLDGVAYRGSSGNAGEIGHTTLDLD 245 Query: 247 GVVCDCGRYGCLETVASLSALKKQARV---WLKSQPVSTQLDPEKLTTAQLIAA------ 297 G VC CG GC+E +A +A+ +AR + +ST + + + Sbjct: 246 GPVCWCGTRGCVEVLAGPAAVVAEARRSPDLAAAAGLSTGTSGSEPQPSVVSDLAAVARA 305 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG-RSCAFGENWLNTIIRQTGFN 356 +G P ++RSA + + +N+L++ + L G A G+ +L + + Sbjct: 306 AAAGHPGARDVLERSARYVAAAALTAVNLLDVRMLVLTGASLAAAGDIYLPAVRGVLASS 365 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 F R P + + + LG L ++ L Sbjct: 366 LFARGAHP----VDVRLSRTAATAPALGGAALVLQTHL 399 >UniRef50_B5I1X5 ROK domain-containing protein n=8 Tax=Streptomyces RepID=B5I1X5_9ACTO Length = 408 Score = 336 bits (862), Expect = 1e-90, Method: Composition-based stats. Identities = 78/396 (19%), Positives = 150/396 (37%), Gaps = 26/396 (6%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 Q +R N ++ + + +++ +A ++ AVS ++ EL + + E Sbjct: 26 TQQGMRRRNLARVMHTVSAEGPLSRAAVASRIGLTRAAVSTLVDELIRSGLLEELGPERP 85 Query: 66 TR-GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGE-FEYLQIDAPTPQALLS 123 R G ++ G + V + + + Y +P+ +++ Sbjct: 86 GRVGRPGSALAVSGRGPAGIGAEVGVDHLAVCAVDLRGQVRSRAVRYGANRGRSPEPVIA 145 Query: 124 EIEKCWHRHRKLWPDH---TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 E+ + LA+A+ G V P W ++ LL + Sbjct: 146 ELASLVSQVVAEGEGEGLWPAGLAVAVPGLVARDVRTVVRAPNLDWHD-TDLGALLPQ-- 202 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + + V N+ ALAE W + DF ++ + GIG++ V++ Q+ RG+ +G++GH Sbjct: 203 DLPLTVGNEANFGALAELWLGDGTPHDFLHVSAEIGIGAALVVDGQLLRGTRGFAGELGH 262 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 V+PDG C CG GCLE A A+ + A L+P + L Sbjct: 263 VPVHPDGPRCPCGGRGCLEQYAGEEAVLRAA-----------GLEPGEDRVGLLAQHAAD 311 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 G+ + + + A+G++L +N+L+ + L G L ++ + Sbjct: 312 GDEAVRGALREAGQALGIALTGAVNLLDPEAVVLGGALAGLAPWLLPSLRDELARRT--- 368 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 + A + L +LG + V A L Sbjct: 369 ----AGPACPVSVSGLGSQGPLLGAAHSVVRAVLDD 400 >UniRef50_A3TWQ2 Xylose repressor, putative n=1 Tax=Oceanicola batsensis HTCC2597 RepID=A3TWQ2_9RHOB Length = 405 Score = 336 bits (862), Expect = 1e-90, Method: Composition-based stats. Identities = 73/391 (18%), Positives = 135/391 (34%), Gaps = 21/391 (5%) Query: 9 QIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ--- 65 R + +L+ + +++ +AR S V++ L + Sbjct: 12 DARDATRLRVLQCIRSAGTISRTDIARALDSSPATVTSACGALLDAGLIREERRMPSENV 71 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDA-PTPQALLSE 124 RG I E L V +I + + G F + P L+ E Sbjct: 72 QRGRPRVMLQINGEAFAVAGLKVAREAIVVMIVDFRGDEIGSFVSPLEASCMDPDGLVQE 131 Query: 125 IEKCWHRH---RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + + L L+L I G V+ TG V+ L + L Sbjct: 132 VRRALDAACARHGLDTARIAGLSLGIPGFVNGETGFMHWSSSVTERN-VDFAPLFRKHLP 190 Query: 182 IRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 +DND ++A AE + +F V+ +++G+G ++N ++YRG ++GH Sbjct: 191 CPTFLDNDANLVAKAEHLFGAGRGLSNFLVVTLEHGVGMGIILNGELYRGERGCGAELGH 250 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 V G +C CG+ GCLE AL + + Q + ++ A ++ Sbjct: 251 MKVQFGGALCQCGQRGCLEAYVGDYALVR--------DTSTGQQSDAAKSIQDILHAARN 302 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 G+ +DR++ +G++L N +N+ + I L + + + Sbjct: 303 GDRLAREVLDRASQILGVALANLVNLFDPEHIVL----ARSRPPFDHPYTEAMLTSLRRN 358 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVE 391 +I L G L +E Sbjct: 359 TVQVDAPLPEITVRNLDEMMWAKGAAALGIE 389 >UniRef50_C6LF86 Putative xylose repressor n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LF86_9FIRM Length = 381 Score = 334 bits (859), Expect = 2e-90, Method: Composition-based stats. Identities = 75/398 (18%), Positives = 143/398 (35%), Gaps = 31/398 (7%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 N + IR N +L + +++++A ++ VS I+Q L + + Sbjct: 3 TGNQELIRDINTQSVLRTIITHGAISRASIASELGLTKATVSAIVQVLLDRGIIFEAESS 62 Query: 64 ----SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ 119 +G + + + + +++ +I AN ++ + + Sbjct: 63 DTAPEGRKGRKPIFLQLNKDCGYVVAIDLATENITLMTANLLGGNCRLTQFPTPEKT--E 120 Query: 120 ALLSEIEKCWHRHRKL---WPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 LL +++ R + +AL IHG V + ++ L Sbjct: 121 LLLPLLKERIDRAINALPKTRYGLLGIALGIHGVVHHNKIIFLPYSSFG---DIDFVSRL 177 Query: 177 EEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 + G+ V+++N+ + AL E W + + I+V GIG+ ++ Q+ +G +G Sbjct: 178 GDIYGVPVVMENEANLSALGE-WAHCHDTNEMLYISVHSGIGAGIIMKNQLVKGKNGYAG 236 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 + GHTI+ DG C CG +GCLE AS AL + + Sbjct: 237 EFGHTIIEVDGRPCPCGNHGCLEQYASERALFAELSA----------QKGYPVNAEVYGR 286 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 ++ G+P + + + + + N LN N + I L + I Q N Sbjct: 287 LYRQGDPAAVRAMQQFIKYMSVGINNLLNTFNPDIIVLNSSLTMCHAGLCDDIAAQLHNN 346 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 ++ L +LG YL E L Sbjct: 347 M--------KDYCRLVPSTLQDTAVLLGGVYLIRERFL 376 >UniRef50_A5FUR2 ROK family protein n=1 Tax=Acidiphilium cryptum JF-5 RepID=A5FUR2_ACICJ Length = 398 Score = 334 bits (859), Expect = 3e-90, Method: Composition-based stats. Identities = 83/398 (20%), Positives = 150/398 (37%), Gaps = 19/398 (4%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 RA +N+ +R N + ++ + ++ L++++ I +S I+ LES V Sbjct: 3 RARVNSALVRRINSARLFHMIRQNPGISQQKLSQISGIDPATISIIINNLESGGIVRRDT 62 Query: 62 DESQTR-GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 D R G + + P + ++V P +I ++ + + AP Sbjct: 63 DAPTGRAGRPTTALSLDPRAGYLAGISVEPDAIRIVISTIDGTACADLAVPGSTAPEAAI 122 Query: 121 LLSEI-EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + R + + +A+ V G P W ++V L +K Sbjct: 123 AAARSGVTAALRSLRATRATLLAAGVAMPALV-STGGRIVFAPNIGWRD-LDVAENLAQK 180 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 L + V V+ND ALAE S++ DF + GIG + ++YRG +G+I Sbjct: 181 LKVPVRVENDVKAAALAEHLFGASRDIADFVYVMGRSGIGGGLYLMGELYRGPHGLAGEI 240 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH + P G C CG GC E S A+ A + A Sbjct: 241 GHMKIVPGGRACGCGGQGCFEAYVSEKAILSDLAARGHGAR----------DVASVRKAC 290 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 ++G+P + + + +GL+L N +NI++ +I L G L + N Sbjct: 291 EAGDPVARAVLAEAGRHLGLALANLINIISPRRIVLGGSLAQLAPFLLPAAMETLEANAL 350 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 + +I ++S + +G L ++ L Sbjct: 351 A----AIYRDVEIVVSEMSGSAAAMGGIALALQQFLDD 384 >UniRef50_C9LAU2 Transcriptional repressor of the xylose operon n=1 Tax=Blautia hansenii DSM 20583 RepID=C9LAU2_RUMHA Length = 399 Score = 334 bits (859), Expect = 3e-90, Method: Composition-based stats. Identities = 83/394 (21%), Positives = 151/394 (38%), Gaps = 27/394 (6%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 N + IR++N+ ++LE + +++ LA+ ++ +SNI+QEL + + I Sbjct: 18 ANQEMIRNNNRRLVLEFIINNPPVSRAELAKQLSLTKATISNIVQELLEQNFIREIGSAQ 77 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 + G + L L + P I + N + + L + Sbjct: 78 TSMGRKPILLEFNKAYGFALSLEIQPQQIIALLTNLKGEVQEIKKIPFCPQDNLLQHLEQ 137 Query: 125 IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVE---VKYLLEEKLG 181 I + R + + I +++ I+G V P P + + L+E Sbjct: 138 ILNFYIRENTAFKNKIIGVSIGIYGVV--QKNEILFTPYYP----LPKSGLGTHLQETFQ 191 Query: 182 IRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 I V V+N+ + L E + + ++ INV GIG ++N ++Y+G +G+ GHT Sbjct: 192 IPVFVENEANLSVLGEAAF-HHKYKNMIHINVHDGIGMGILVNGRLYKGRDGYAGEFGHT 250 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 I+ PDG C CG GC E AS A+ + K E +T ++ + + + Sbjct: 251 ILFPDGKPCPCGNQGCFELYASQRAILENYAARQKK---------ENVTISEFLKDYDAN 301 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 P +D I + + N +N N + I L + I + Sbjct: 302 LPLAHEMMDLFVKYISIGINNIINTFNTDIIVLNSAFSNHIPDINQRISEYLAGHQ---- 357 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + I +L +LG + VE L Sbjct: 358 ----NRDCNIIPSKLGNLSCLLGGARISVENFLD 387 >UniRef50_C5BZR0 ROK family protein n=3 Tax=Micrococcineae RepID=C5BZR0_BEUC1 Length = 393 Score = 334 bits (858), Expect = 3e-90, Method: Composition-based stats. Identities = 83/399 (20%), Positives = 141/399 (35%), Gaps = 21/399 (5%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + +R N+ +I++ + + + LA +S +S I++EL V Sbjct: 7 TSGSQSSLREANRSLIVDTVKQFGGLTQVELAGATGLSAATISTIVKELLGAGVVEVRPT 66 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 G + +A + V S+ + + + E L Sbjct: 67 SRS--GRRAQMVTLARRVGLAAGVQVGHRSMRVVLGDFSHTVVAEQSLPLPHEHLLDTGL 124 Query: 123 SE---IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + D + + L + VD TG+ + +++ ++ Sbjct: 125 DRASLLIADLLERVGSPIDELVGVGLGLPAPVDGATGMISVRGVMRGWDGEHLAHVMSKR 184 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 L V VDND + ALAE S+E D + YGIG+ V+N +YRG +G+I Sbjct: 185 LARPVHVDNDANLGALAEHTLGASREHLDSVYVRASYGIGAGVVLNGAVYRGYAGTAGEI 244 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH V+P G +C CG GCL+TV AL R + LT +IA Sbjct: 245 GHVQVDPQGAICRCGNRGCLDTVVGADALLASLRASHGN-----------LTLRDVIALA 293 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 G+ V + AIG + +N + + G GE L + Sbjct: 294 TDGDRGCARLVADAGEAIGTVVAGLCAAVNPQVVVVGGELAETGEILLGPLRDAVRRGVL 353 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 P ++ +L +VLG +++ I Sbjct: 354 RNQIAP----LEVVAAELGPRAEVLGALVHVLQSTDVDI 388 >UniRef50_C1F498 ROK family protein n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F498_ACIC5 Length = 402 Score = 334 bits (857), Expect = 5e-90, Method: Composition-based stats. Identities = 73/390 (18%), Positives = 149/390 (38%), Gaps = 20/390 (5%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 +++ R N+ ++LE++ ++ +++ LAR++ + VS I+++L E + Sbjct: 12 ASSETARRINRDILLEIIRARQPISRADLARVSGLQRSTVSQIIEQLIEELWIREGAVAR 71 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 RG ++ + L ++ P V + E + P + + Sbjct: 72 LPRGRRPTMLVLNED-VVVLTADLHPRKAAIAVIDLNGRVLSHAELSL--SHDPAKVATA 128 Query: 125 IEKCWHRHRKLWPDH-TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIR 183 I +C R R+ P+ + +++ G+VD T P W +++ L + L + Sbjct: 129 ILECMRRLRQAHPEKSFRGVGVSLPGRVDSQTQRLIFAPNLHWPD-FDLRQALAKGLRMP 187 Query: 184 VMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 V ++N +E W Q ++ +I V GIG + N Q+ G +G+ GH Sbjct: 188 VEMENAANACLTSELWFGRMQGVQNAVLITVSEGIGGGILANGQLVTGQNGMAGEFGHIS 247 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 ++P G C CG+ GC ET AS A + + + ++ L+A Sbjct: 248 LDPRGPRCGCGQRGCWETFASCKAALRHYQESSGAS--------RRIAYQDLLALGAEKN 299 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDE 362 P + A IG L + L+ + + G + + ++ Sbjct: 300 PHAVGALTEQARQIGRGLRLVIASLSPELVLIAGEVTSAWNLVAPALRKEMEAQWLGGTM 359 Query: 363 GPSVKATQIGFGQLSRAQQVLGIGYLYVEA 392 +I S A ++ G + ++ Sbjct: 360 P------RIEPTFDSDAARLRGAAAMLLQR 383 >UniRef50_A8RG91 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RG91_9CLOT Length = 403 Score = 333 bits (856), Expect = 5e-90, Method: Composition-based stats. Identities = 71/397 (17%), Positives = 144/397 (36%), Gaps = 14/397 (3%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 N + I+ N+ ++L LL ++ ++ LA L+Q+ V+NI+ + V + Sbjct: 6 RGFNQENIQDMNRTLLLNLLRKEGICARAHLANLSQLKQATVTNIVSDFIDWGLVKEVGF 65 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 +G S I + L + + + + N + P+ Sbjct: 66 LVGNKGRRSIGISINNDDFGVLAIRLARKNYTVGIFNLSGRLLDKKRVELDVNQPPRVTF 125 Query: 123 SEIEKCWHRHRKLWPDH-TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 I + I + +AI G G + M + ++ L++ Sbjct: 126 EAIIHEAGELIRSSESRKIIAIGMAIPGPYSEKRGRIELMTGVLGWNEIPIQEKLQDIFK 185 Query: 182 IRVMVDNDCVMLALAEKWQNNSQERD--FCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 I V ++ D ALA+ W N+ ++ I V G+G+ + N ++ +G + +G++G Sbjct: 186 IPVFLEQDANAGALAQYWHNDEDYKNGVVVYIAVGQGVGAGIINNGELLKGCIGVAGEVG 245 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 HT + +G C CG YGCLE S A K+ L+ + Q+ + Sbjct: 246 HTSICYNGPRCACGNYGCLENYCSSIAFTKEVNRVLRPEIEY--------NFRQVSQLLR 297 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 G+ +T + + + + + N +N N + I + + + + + N + Sbjct: 298 DGDQVVTDIFLDACDKLSVGIVNIINSFNPSVIVIGDEMSHILPSVM---LERVKSNVKE 354 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 R I +S G + + Sbjct: 355 RVLPEIYANMNITMSVVSNDSMAHGAAIVAINDIFNH 391 >UniRef50_UPI00017899E8 ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI00017899E8 Length = 386 Score = 333 bits (855), Expect = 7e-90, Method: Composition-based stats. Identities = 73/401 (18%), Positives = 171/401 (42%), Gaps = 23/401 (5%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ + ++ N+ + +++ ++ +++ +A+ +S VS I+ EL E V Sbjct: 1 MKK-HDQDFMKRQNRLTVFQIIKNEQPISRAAIAKQTGMSPTTVSRIVSELTEEGYVHET 59 Query: 61 DDESQ-TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ 119 ++++ RG S + ++ + + + + + + T Sbjct: 60 EEQASAGRGRKSSLIRLLDTAVISIGVELDRHQANIGFIDVQGNVLCSGSFSRSSDETAD 119 Query: 120 ALLSEIEKCWHRHRK---LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 ++ I + + + + + + G +D G+ Q W V + L Sbjct: 120 VTVTRIAETIEELIAECDIDRRRVVGIGVGLPGIIDVDAGIVNFSVQLGWKN-VGLAERL 178 Query: 177 EEKLGIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGS 235 +E G++ +VDN+ + ALAE+ + ++ + ++ G+GS+ ++ +IYRG + Sbjct: 179 KELTGLQAVVDNELKVKALAEQLKGSAYGSNRTVLLGFGNGVGSALILEGEIYRGVTNSA 238 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLI 295 G+IGHT V+P+G++CDCG+ GCL+T ++ +L +A + T +L Sbjct: 239 GEIGHTTVDPEGMMCDCGKAGCLQTYINIPSLLSEASKIKPVR-----------TIEELF 287 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF 355 A ++G W + +DR+ + +++ N +++ N + + L G + + Sbjct: 288 AERRAGTRWASYLIDRALAYMAITINNVVSMYNPDSVILSGEFLDK----FPEVYEEITD 343 Query: 356 NPFDRD-EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + + P + I +L +G G + + + Sbjct: 344 LCYSQYIWEPLQDSFSIVRSELHEHGVTIGSGLVAQDRYFQ 384 >UniRef50_A0LSD8 ROK family protein n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LSD8_ACIC1 Length = 420 Score = 333 bits (854), Expect = 9e-90, Method: Composition-based stats. Identities = 87/387 (22%), Positives = 148/387 (38%), Gaps = 10/387 (2%) Query: 15 KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTW 74 +L L+ R +S L + + A++ L L + + + T G Sbjct: 15 LAQLLALIRRGSAVTRSELVQSSGFGRTAIARRLDHLMALGLIAESEPLPSTGGRMPRGV 74 Query: 75 LIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRK 134 + L + TSI + + E A P++ L+ +E + Sbjct: 75 YFRADAGRLLVAELGATSIAAGICDLDCRVLSSREEAWDIAAGPESTLARLEALLSELLR 134 Query: 135 LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLA 194 + + + G ++ TG + P P V+ L ++ V VDND +LA Sbjct: 135 DHQAKVWGIGVGLPGPIEFATGRPVSPPIMPGWDRYPVRERLAKRFSAPVWVDNDVNVLA 194 Query: 195 LAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV-NPDGVVCDC 252 L E + D I + GIG+ V +++RG+ +G IGH V + VVC C Sbjct: 195 LGELRAGVGRAHSDLIYIKIGTGIGAGIVSGGRLHRGAQGCAGDIGHVAVTDDQAVVCRC 254 Query: 253 GRYGCLETVASLSALK----KQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSW 308 G GCLE VA +AL AR + LT A + A +G+ Sbjct: 255 GNIGCLEAVAGGAALARRATAWAREGRSGYLQQRLTEGGDLTAATIAAGAAAGDTGCVEL 314 Query: 309 VDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKA 368 + +A IG SL F+N N + + + G G +L +I ++ + R + + Sbjct: 315 LAAAARQIGDSLATFVNFFNPSIVIIGGGVAQAGNAFLASIRQRV----YSRSLPLATRD 370 Query: 369 TQIGFGQLSRAQQVLGIGYLYVEAQLR 395 QI L ++G ++ V+ L Sbjct: 371 LQIVLSSLGDIGGLIGAAHMVVDEILS 397 >UniRef50_C9YT50 Putative ROK family transcriptional regulator n=1 Tax=Streptomyces scabiei 87.22 RepID=C9YT50_STRSW Length = 429 Score = 333 bits (854), Expect = 9e-90, Method: Composition-based stats. Identities = 80/398 (20%), Positives = 157/398 (39%), Gaps = 12/398 (3%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 ++ IR N+ +L + + ++ LA +S+ V+ ++ EL + + + E Sbjct: 7 TSRDIRTANRYEVLRQIIAKSPTSRQELAAATGLSLATVATLVGELLDLRMITEVGFEDS 66 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPT-PQALLSE 124 G G + G + +++ T + ++ + L+ E P+ ++ Sbjct: 67 AGGRPRGLVAVNASGGALIGVDIAETYVHVELFDLALNVLARAEENVRPGENLPEQMVGH 126 Query: 125 ---IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + + + +++ GQVD TG+S+ P W V + LL E + Sbjct: 127 VAAAVGSVVAQAGIEGARVLGVGVSVPGQVDRATGISEYAPNWDWHD-VPLLDLLTEHIA 185 Query: 182 IRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + +DN +A+AE W ++ D ++N+ G+G+ V+ ++RG +G+ GH Sbjct: 186 YPLYLDNPLRAVAVAELWFGAARGHGDAVIVNLGTGVGAGLVLGGGLHRGVSNSAGEWGH 245 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 T + DG +C CG +GC+ET + R + D + T A L Sbjct: 246 TTIVLDGRLCHCGNHGCVETYVGAPGIMLNLRELSPRSTLLHPED-QTATIAALARGVAR 304 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAF-GENWLNTIIRQTGFNPFD 359 +P V +A +G + + +N+ N + L A GE + + + Sbjct: 305 QDPVAVKVVRDTARYLGAGIADLVNLFNPEVVVLSSWVAAALGEPLVAEVREAVARHALP 364 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 R AT I + LG +E L+ + Sbjct: 365 RPMA----ATDIVLSLIPTDPACLGAATFALEGALQSV 398 >UniRef50_Q024A9 ROK family protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q024A9_SOLUE Length = 387 Score = 333 bits (854), Expect = 1e-89, Method: Composition-based stats. Identities = 70/395 (17%), Positives = 153/395 (38%), Gaps = 19/395 (4%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 +++ +R N+ ++L L+ ++ +++ LAR + + +S I+++L E V+ Sbjct: 9 QGASSEVVRDINRRIVLNLVRTRQPISRADLARASGLQRSTISLIVEQLIEENWVLEGPT 68 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 RG + + + +++ P +A+A + + P+ L Sbjct: 69 GRLPRGRRPTFLRLNDD-RVIIGVDIRPIQTTVALADANGK--FTSQEVMSTPGDPKLAL 125 Query: 123 SEIEKCWHRHRKLWPDH-TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 +++ R + + +++ G+ D + P WT ++++ + E+ G Sbjct: 126 TQLIAAIKRIKSTCRGKMIEGIGISLPGRFDHSSNRLVFAPNLKWTD-IDIRDPIVEQTG 184 Query: 182 IRVMVDNDCVMLALAEKWQNN-SQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + V ++N LAE W + + R+ V+ V GIG+ + N + RG +G+ GH Sbjct: 185 LDVELENAANACVLAEVWFDRVHECRNLVVVTVSEGIGTGVLANGALVRGLSGMAGEFGH 244 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 ++P G C CG GC E AS A + T L+ L++ Sbjct: 245 VPLDPTGPTCGCGSRGCWEIFASNRAALRYYLE--------TGSTETGLSFTDLLSRADQ 296 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 G+ +D A+ +G + + L +I + G + + + I + Sbjct: 297 GDSRAEKALDMMAHYLGRGMRMIVAGLAPERIVVVGDLTRSWQRFGSVIEAEIQAQVLPG 356 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 P ++ ++ G L ++ Sbjct: 357 GVVP-----KLVPAFEDGMARLRGTVALVLQKHFS 386 >UniRef50_B5YE80 Glucokinase n=2 Tax=Dictyoglomus RepID=B5YE80_DICT6 Length = 320 Score = 332 bits (853), Expect = 1e-89, Method: Composition-based stats. Identities = 61/323 (18%), Positives = 126/323 (39%), Gaps = 15/323 (4%) Query: 81 DWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWP--- 137 + +++ T I + + G + ++++I+ Sbjct: 2 RKAVGVDLGGTKINVLLVDDQGKVLGRDKQPTESEKGKDHVINKIKSMIDNVLNQAGLKI 61 Query: 138 DHTINLALAIHGQVDPVTGVSQTMPQAP--WTTPVEVKYLLEEKLGIRVMVDNDCVMLAL 195 + + G +D + P W V + LEE + V ++ND ++A Sbjct: 62 TEIEGIGIGFPGLMDRDKKTTLYAPNLGDEWKKEVLLGKELEETFNVPVYLENDVNLIAW 121 Query: 196 AEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGR 254 AE + + + + GIGS V+N +++ G+ +G+ GHT V PDG VC CG Sbjct: 122 AEWLVGAGRGTKTMICVALGTGIGSGIVLNGKLWIGAHGMAGEFGHTTVLPDGPVCGCGN 181 Query: 255 YGCLETVASLSALKKQARVWLKSQPVST-----QLDPEKLTTAQLIAAWQSGEPWITSWV 309 GC+E +AS + ++K A+ L P S + +++T + A + G+ Sbjct: 182 RGCIEAIASGTGIEKYAKSILPQYPNSLIWELCNGNLDEVTVKIIYQAAERGDKLAVDIF 241 Query: 310 DRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKAT 369 + + +G++L N+++I++ +I + G E + + + R Sbjct: 242 NYAGYYLGIALANYVHIIDPEKIVIGGGVANVREYIGKPMKEEF----YKRVLPSFRDKV 297 Query: 370 QIGFGQLSRAQQVLGIGYLYVEA 392 + +L +G L + Sbjct: 298 TFSWAELGEDAGGIGAALLVLYR 320 >UniRef50_A1SS79 ROK family protein n=2 Tax=Psychromonas RepID=A1SS79_PSYIN Length = 408 Score = 332 bits (853), Expect = 1e-89, Method: Composition-based stats. Identities = 75/396 (18%), Positives = 163/396 (41%), Gaps = 13/396 (3%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 + I+ N I +++ + ++ +A +++++ +V+ I ++L + + ++ Sbjct: 13 ASVDHIKQLNSATIYKVIEKYAPISRVKIANVSKLAPASVTKITRQLLQQGIICETARQA 72 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 T G + + + L + + ++ N + ++I + Q LL+ Sbjct: 73 STGGRCAISLAPNTDNIHVLAIKIGQKTLSLSCYNLAAEQL-TTKKIKIKSEDEQQLLAF 131 Query: 125 IEKCWHRHRKL---WPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + K +A+++ G ++P GV P P + +E+ Sbjct: 132 LISEIDNFIKKQQKNMGKISAIAISLSGLINPKKGVVLYSPYHPLVN-FPLANKIEQHFQ 190 Query: 182 IRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + + N LALAE + S+E D +I++ +G+GS +I + G + G+IGH Sbjct: 191 LPTFIGNHTRSLALAEHYFGASKECLDSILISIHHGVGSGIIIEGKALLGQNFNIGEIGH 250 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 NP G C CG +GCLET S + ++ + +K T+L + L ++ A + Sbjct: 251 IQANPAGRQCHCGNFGCLETEVSDRVIVEKVAIAIKQG-SFTRLSLDSLNIEKIYQAAED 309 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 +P V+ +A +G ++ +N+LN +I + G+ + L+TI + Sbjct: 310 NDPLCQKIVEDAATYLGKAIAILINLLNPQKIIIAGKIIRAKTSLLSTIEQCIAHQVL-- 367 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 QI L + + ++ + + Sbjct: 368 --PNFQHKVQIETSLLEPDTTL--AAFALIKQAIYE 399 >UniRef50_A9F5U1 Transcriptional regulator of the ROK-family n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F5U1_SORC5 Length = 408 Score = 332 bits (852), Expect = 1e-89, Method: Composition-based stats. Identities = 88/399 (22%), Positives = 152/399 (38%), Gaps = 14/399 (3%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 NN+ R N+ ++L+L+ +++ LARL+ ++ P VS I++EL V ++ Sbjct: 7 KTANNRTPRELNRSLVLDLVQEHGPISRTNLARLSGLTKPTVSAIIEELLDSGSVRDVGT 66 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 G + + L + + VA+A + E + P + Sbjct: 67 -ESRGGRPARLLEFNDDSAAFLGIEIGVEQTAVAVADARGRLRARLEQPTV-LRDPHRTV 124 Query: 123 SEIEKC---WHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 +I + + + + G ++ +GV P W V+ L Sbjct: 125 RDIVELLPKVLQLSGVPRKRLRGACAVLPGLIERPSGVCVLAPNLGW-ERFPVRAELSRA 183 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 L ++V V N A+AE ++ + I V G+G+ V + +++ G SG+I Sbjct: 184 LRMQVPVYNLPQAAAVAEGELGAARGHASYVWIYVGLGVGAGLVADGRLFFGMQGYSGEI 243 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH V DG C CGR GCLET AS+ AL++ A P L +A +A Sbjct: 244 GHCRVADDGPPCGCGRRGCLETFASVMALRRAAEAASARSPQLAALARPHAVSAV-ASAA 302 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 +G+ + + + + LN+LN I L G A + L + + Sbjct: 303 LAGDESARAIFHDAGAQLARGIAVLLNLLNPQLIVLGGELLAAPDILLAGVRDGLPRHAV 362 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 + L VLG L E +R + Sbjct: 363 RGA------DVPVVASPLGSEAGVLGALLLAREGAVRSL 395 >UniRef50_D1BD00 Transcriptional regulator/sugar kinase n=4 Tax=Actinomycetales RepID=D1BD00_SANKS Length = 395 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 85/383 (22%), Positives = 152/383 (39%), Gaps = 18/383 (4%) Query: 18 ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIA 77 + +LL + ++ LA + + ++ + L + V + S T G T+ + Sbjct: 19 LFQLLRDGQPRTRAELAAVTGQARSTIAARIDLLMASGLVAPAGEASSTGGRPPATFAFS 78 Query: 78 PEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRH---RK 134 P L +++ T V + + E E A P +L + + Sbjct: 79 PAARVVLAVDLGATHAHLAVTDLASTVLAELEAPIAIADGPDVILGWVAQTGEELVLSTG 138 Query: 135 LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLA 194 D +++ + + G V+ TG P P V+V L +LG V+VDND ++A Sbjct: 139 RTLDDLVSVGVGLPGPVEHSTGRPINPPIMPAWDDVDVPGGLSARLGASVLVDNDVNIMA 198 Query: 195 LAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV-NPDGVVCDCG 253 L E D + V GIG+ + + + RG+ +G IGH V + V C CG Sbjct: 199 LGEHRTEWPGVSDLLFVKVATGIGAGIISDGALRRGAQGAAGDIGHVAVSDRSEVPCRCG 258 Query: 254 RYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSA 313 GCLE VAS A+ Q + S ++A ++G+ + + V ++ Sbjct: 259 NLGCLEAVASGQAVAAQLAATGLAATSSN----------DVVALVRAGDLYASRAVRQAG 308 Query: 314 NAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGF 373 IG L +++LN + I + G + GE+ + I + R + + +I Sbjct: 309 RDIGTVLAGCVSLLNPSMIVVGGVVASSGEHLIAGIREVV----YRRSLPLATQHLRIVA 364 Query: 374 GQLSRAQQVLGIGYLYVEAQLRQ 396 + VLG + V+ L Sbjct: 365 SRTGNRAGVLGASAMAVDHVLSS 387 >UniRef50_C1YJZ1 Transcriptional regulator/sugar kinase n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YJZ1_NOCDA Length = 396 Score = 332 bits (852), Expect = 2e-89, Method: Composition-based stats. Identities = 77/395 (19%), Positives = 158/395 (40%), Gaps = 15/395 (3%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + +R N+ ++++L R+ ++ LAR +S +VSNI++ L + V+ D Sbjct: 7 TPGSQSALRRANERRVVDVLRREGTRTQAELARATGLSAASVSNIVRGLRAAGTVLVRDT 66 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 + G + + + + ++ T S+ V ++ + E A + + Sbjct: 67 --SSNGRRAKAITLVRQPGAVVAVDFTADSVRVAVGDSDGNMLAREEIGYDVASDAERGV 124 Query: 123 SE---IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + + ++ ++ +I G +DP TG + P L E+ Sbjct: 125 RRAAWLAETILLRSRVDRGTVSSVVASIPGPIDPGTGEVGGISCLPRWAGFRPARELTER 184 Query: 180 LGIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 LG+ V+ +ND + LAE+ + + ++ G+G+ +++ Q++RG+ +G+I Sbjct: 185 LGLEVLAENDANLAVLAEQHRGAGVGAEHVVHLVLNDGVGAGIMMSGQLFRGAGGTAGEI 244 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH ++P G VC CG GCLET S L Q P+ + ++AA Sbjct: 245 GHIALDPRGHVCRCGNRGCLETFVGASYLLDML-----PQNTDVARGPDPVRIPDMVAAA 299 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 G+P + + A+G N+ N +++ + G G+ L+ + R Sbjct: 300 LEGDPGSRRIIAEAGTALGQGTAIVANLFNPDRVVVGGELAQAGDLLLDPMRRSMELGSL 359 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 ++ L R + G + + Sbjct: 360 SSAL----DRLELVPSALGRDASLYGALRMAAQQV 390 >UniRef50_C6Y2I2 ROK family protein n=5 Tax=Bacteroidetes RepID=C6Y2I2_PEDHD Length = 405 Score = 331 bits (850), Expect = 3e-89, Method: Composition-based stats. Identities = 83/388 (21%), Positives = 155/388 (39%), Gaps = 13/388 (3%) Query: 15 KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTW 74 K +I+ L + A + L R +SIP V+ + L +E V + T G + Sbjct: 23 KKIIISYLAEKGHATIADLCREMNLSIPKVTTSVTMLITEGVVKDFGKVGSTGGRRPNIY 82 Query: 75 LIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRH-- 132 + P+ + L ++V I + + +Y+ + L E+ + Sbjct: 83 GLVPDSGFFLGVDVKHQHINIGLIDLQKVIIKITKYIPYQLINNKDALYELCRLIKEFIY 142 Query: 133 -RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCV 191 + + L + + G+++ TG S + +LE++LGI+ MV+ND Sbjct: 143 NTSIPKYKILGLGINLSGRINHETGYSYNFFNFY---EDPLSTILEKELGIKTMVENDSR 199 Query: 192 MLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVC 250 +A E +E D +N+DYGIG ++N+++Y G +G++GH + + ++C Sbjct: 200 AMAYGEFSAGVVKEEEDVLFLNLDYGIGMGIMLNKKLYYGKSGFAGELGHVPLLNNEIIC 259 Query: 251 DCGRYGCLETVASLSALKKQARVWLKSQPVST--QLDPEKLTTAQLIAAWQSGEPWITSW 308 CG+ GCLET AS L + + +++ +T + +L +I A + + Sbjct: 260 QCGKKGCLETEASGQGLIRMFKTRVEAGSTTTIDKNKLGQLQVQDIIRAANNDDVLSIEL 319 Query: 309 VDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKA 368 + + +G + +NI N I L G GE I Sbjct: 320 LAKMGEILGRGIAMLINIFNPELIVLGGLLAETGEYIQLPIKSAVNKYSLS----LMNND 375 Query: 369 TQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 T++ +L V+G L L Sbjct: 376 TKLKLSKLGEEAGVIGSCLLIRNKLLEH 403 >UniRef50_A9WM33 Glucokinase n=4 Tax=Micrococcaceae RepID=A9WM33_RENSM Length = 446 Score = 331 bits (849), Expect = 4e-89, Method: Composition-based stats. Identities = 83/396 (20%), Positives = 151/396 (38%), Gaps = 20/396 (5%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 R + +R N+ I+E L ++ L+R +S VSN+++ + V Sbjct: 55 RNPGSQSALRQSNQQRIVETLLNAGPLTQAELSRHTGLSTATVSNLVKIMSDGGLVSTAP 114 Query: 62 DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL 121 S G + + + G + ++V T + +A+ E Sbjct: 115 TTSS--GRRATSVRLNSNGAVAVGIDVGRTHVRVAIASLGYRVIAERSIKLPLGHLAVEG 172 Query: 122 LSEIEKCWH---RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 + L + + I G +D TG P + + +LE+ Sbjct: 173 VKAAADLLQGLLHDAGLPASAVVGAGVGIPGPIDSRTGTVIQGAILPEWVGINILEMLED 232 Query: 179 KLGIRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 L + V VDN + ALA+ +S D + + GIG+ ++ Y G++ +G+ Sbjct: 233 ALKVPVYVDNYANLGALAQVTWGVHSAVEDLVFVKIGSGIGAGLILGGSPYYGNIGVTGE 292 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 IGH ++ G++C CG GCLETVAS + + + ++ P +TT +I Sbjct: 293 IGHATISEQGLICRCGNRGCLETVASTAIMIELL----------SRGAPAPITTEDIIRL 342 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNP 357 + + +D + A+G ++ N N+LN I + G GE L I R + Sbjct: 343 AREKDSATLRVIDDAGQAVGRAIANVANLLNPEVIVVGGSLAELGEVLLEPIRRGLIRHA 402 Query: 358 FDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 + T + + + LG L + Q Sbjct: 403 V----PVVGETTHLVMSSMGNRAEALGGAALVFQHQ 434 >UniRef50_Q9KEZ9 Transcriptional repressor of the xylose operon n=1 Tax=Bacillus halodurans RepID=Q9KEZ9_BACHD Length = 388 Score = 330 bits (848), Expect = 5e-89, Method: Composition-based stats. Identities = 73/409 (17%), Positives = 150/409 (36%), Gaps = 46/409 (11%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M I+ N+ ILE + ++ ++S L+++ ++ VS+ + L E ++ Sbjct: 1 MDTRG-ATFIKKMNRRAILEKIIEKQEISRSDLSKITNLNKVTVSSQVASLLEEHLIIEK 59 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 + G + +TL +++ ++ + N + + ++ + Sbjct: 60 QYAESSGGRKPILLTLNENAAFTLGIDLDIKTLTFMLCNLKGAVIKKEQWK-LANVDFDD 118 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHG--------------QVDPVTGVSQTMPQAPW 166 +++E+ K I VD P Sbjct: 119 VVNEMISLIQSFLKD-----------IPASKYGVVGIGIGIHGIVDNDE-TIAFTPG-HH 165 Query: 167 TTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQ 226 + V VK +E+ + I V+V+N + ALAE ++ + + I+ G+G +++ Sbjct: 166 WSNVNVKQPIEQAVNIPVVVENSTNLCALAENVVSDHEADNLLCISSFSGVGMGLIVHNA 225 Query: 227 IYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDP 286 IY+G +G++GH I+ P+G C CG GC E AS AL ++ K Sbjct: 226 IYKGFHGYAGEVGHMIIVPEGKPCRCGNKGCWELYASEKALYQEISESTKR--------- 276 Query: 287 EKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWL 346 E + ++A ++G+ +D+ L L N +N N I + L Sbjct: 277 EHVDRDVVLALIEAGDEETLKKLDQFIYYFSLGLNNIINSYNPETIVISSGLM----PHL 332 Query: 347 NTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 I + + + + L + LG ++ ++ L Sbjct: 333 PNIEHKIQSHLHSKISHYK----TLKISNLGKEACALGACFIGIKQFLE 377 >UniRef50_C1XND9 Transcriptional regulator, MarR family n=1 Tax=Meiothermus ruber DSM 1279 RepID=C1XND9_MEIRU Length = 397 Score = 330 bits (848), Expect = 5e-89, Method: Composition-based stats. Identities = 67/395 (16%), Positives = 140/395 (35%), Gaps = 22/395 (5%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 ++ Q I+ N+ +ILE L R +++ LAR ++ VS ++QE+ E + Sbjct: 4 TTPLDQQAIKRLNRRLILEALRRHGPQSRAALARAVGLTKSTVSTLVQEMLEEGLLDEGS 63 Query: 62 DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL 121 G +P L + + + + + + + ++++++ Sbjct: 64 RHKPGLGRPGTALEFSPRHTLALGVELGVENTQLVLLDLNNTIHDKWDWVESPHTPLAER 123 Query: 122 LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 L+++ + P + + LA+ G V+ P W +LE L Sbjct: 124 LTKLAEQVQSRL-SDPTRLLGIGLAVPGVVNGRR--LLYAPGPGWHNEQP-AEMLEALLK 179 Query: 182 IRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 + +VDND AL E + Q + + G+G+ V++ Q+YRG L +G++GH Sbjct: 180 VPTLVDNDANAAALGETFWGEQQ-SPLVYVLMTTGLGTGLVVDGQVYRGRLGAAGELGHW 238 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 G R G +E SL A+ ++ + + ++ + Sbjct: 239 ---LTGQPHSRSRAGDVEGTLSLRAMVERYQAASNRKEGFWG----------ILQRAEHQ 285 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 +P+ + A +G + N + + L G + + + F Sbjct: 286 DPYALQALQNLAYELGRFVVNLCVAFDPAVVVLGGAGAEAWKWLEAPLRQTIHNLAF--- 342 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 P + +G L ++ L Sbjct: 343 -IPEHAEIPVKPSAFGHLAPAMGAAALVLQRFLAN 376 >UniRef50_C1D0G6 Putative transcriptional regulator, NagC family n=1 Tax=Deinococcus deserti VCD115 RepID=C1D0G6_DEIDV Length = 440 Score = 330 bits (847), Expect = 6e-89, Method: Composition-based stats. Identities = 90/399 (22%), Positives = 161/399 (40%), Gaps = 13/399 (3%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 A ++ IR + ++L+LL+ + RA + +AR +S A+S+I+ EL V + Sbjct: 7 APLDLAAIRARHTALLLQLLWERDRA-RVDIARDLGMSRSAISSIVSELIGVGLVQEGNT 65 Query: 63 ESQTR-GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA- 120 R G + + L +++ + + + + P Sbjct: 66 RGSGRAGRRATLLSLNARAAALLAIDLGASHVRMDLMDLRCRTLASRTVPHEVISGPAET 125 Query: 121 --LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 LL + R + DH + L + G VD TG P P V+ L+ Sbjct: 126 YHLLLRLADAVQREAHVPADHVALVGLGVPGPVDQDTGRVIRPPNMPGWDGEPVREALQR 185 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 LG+ V+VDND + A AE + D + GIG+ ++ +++RG G+G+ Sbjct: 186 HLGLEVLVDNDANLGAQAEARFGPHRGVSDLIYVKAATGIGAGVLLGGRLHRGVRGGAGE 245 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 IGH +N G V G G LE+ A+ L A + + DP +T L+ Sbjct: 246 IGHISINEQGPVGRSGNPGSLESYAAAQVLVATAEARRAAGAPTLLTDP--VTLPALVRH 303 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNP 357 ++ +P + + +G+++ LN+ N + + GR G +LN + + Sbjct: 304 AET-DPLARELWEDVGHHLGVAISTALNLFNPAVVVIGGRLAEAGPVFLNAVRS----SA 358 Query: 358 FDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 R + + T+I L VLG G + ++ L Sbjct: 359 LSRTMQINAERTRIDLSTLGGDAGVLGAGAMMLDQLLTS 397 >UniRef50_B2V1I0 Putative transcriptional repressor of the xylose operon n=2 Tax=Clostridium botulinum E RepID=B2V1I0_CLOBA Length = 379 Score = 330 bits (847), Expect = 7e-89, Method: Composition-based stats. Identities = 77/393 (19%), Positives = 160/393 (40%), Gaps = 26/393 (6%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 + +R NK I++ + +K+ +++ L+ ++ VS I++EL + + T Sbjct: 7 KDLRSLNKIKIIQSILYKKQISRADLSTFTSLNKATVSVIVKELLDLRLIEESTIGDSTG 66 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEK 127 G I + + + +++ T I+ V N + + + + + + Sbjct: 67 GRKPIILTINEDIGYVIAIDINITMIDIIVTNLSNKILSSYSIK-NEDNNFETIFNNLFS 125 Query: 128 CWHRHRKLWPDHT---INLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184 H+ + + P + ++LA+ G VD G+ + +PQ W ++++ LE + + + Sbjct: 126 LIHKIQNVMPSSIYNLVGISLAVRGVVDL-NGLIKFIPQLGWKN-IDIRSKLENEFNVPI 183 Query: 185 MVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVN 244 ++ND + A+AE D V+++D I S + N Q+ +G L + IGH ++N Sbjct: 184 YIENDGNLSAMAEHKL-MPNYNDMLVVDIDDVITSGIICNSQLVKGFLGFANAIGHHVIN 242 Query: 245 PDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPW 304 DG C CG+ GCLE S A+ L + + + + P+ Sbjct: 243 CDGKQCTCGKRGCLEQYCSNLAILSHINQSLPVK-----------DIEEFVNLVKEENPY 291 Query: 305 ITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGP 364 S +D + + + L N + ILN I L + + + P Sbjct: 292 ALSTLDYFIDHLAIGLTNLIFILNCEVIVLNSYILREIPVAMQKLHEKI--------FLP 343 Query: 365 SVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 + + +L + ++G + VE + I Sbjct: 344 ITRYQDLYLSKLGKKAPLIGACNICVEQFYKSI 376 >UniRef50_B0RFZ3 Putative ROK-family transcriptional regulator n=2 Tax=Clavibacter michiganensis RepID=B0RFZ3_CLAMS Length = 444 Score = 329 bits (846), Expect = 7e-89, Method: Composition-based stats. Identities = 71/414 (17%), Positives = 146/414 (35%), Gaps = 22/414 (5%) Query: 1 MRACINNQQIRHHNKCVILELLYRQ-KRANKSTLARLAQISIPAVSNILQELESEKRVVN 59 MR N I +N+ V+L+ + R + A++S +A +S V+N+ + L E V Sbjct: 24 MRRGTNLPAIGGYNRTVVLDAVRRAAEGASRSEIAERTGLSAQTVTNVSRRLIDEGLVRE 83 Query: 60 IDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ 119 + G + G + + +++ P I + + + A P Sbjct: 84 GGTVIRGPGKPRTLLHLVAGGRFAVGVHMDPAVITSVLLDLEGTVLRHVSSPTPSASRPD 143 Query: 120 ALLSEIEKCWHRH---RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 +++ + + + + + LA G +D G+ P P V ++ L Sbjct: 144 EVVALVARLVDGLIAGAGVDRGAVLGVGLAAPGPIDVGAGLVLDPPMLPHWRHVPLRSAL 203 Query: 177 EEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 G+ V+++ D A+AE W R + G G+ V+ + RG+ +G Sbjct: 204 STATGLPVLLEKDVTAAAVAELWFGPGDRRHLAFVYYGTGFGTGLVLGGEPVRGASSNAG 263 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARV------------WLKSQPVSTQL 284 GH +V G C CGR GC+ + + AL +QA L+ S Sbjct: 264 DAGHIMVAARGRRCTCGRVGCVGELITPHALVRQAVEGGVLRAGDVSDAALEEAAASGDA 323 Query: 285 DPEKLTTAQLIAAWQSGEPW---ITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAF 341 +L A + V+ +A + ++ +N+L+++++ G Sbjct: 324 VDMRLIGEAFHALAARADTEDGSARRIVEAAARHLARAIVIQVNLLDLDEVVCGGPFWH- 382 Query: 342 GENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 ++ + ++ + +G L ++ Sbjct: 383 --PIARLVLETLPEEVRRSPALIAKHPVRVVESAVGEDVAAVGAACLVLDNAFS 434 >UniRef50_A9WTI5 Transcriptional regulator, ROK family n=1 Tax=Renibacterium salmoninarum ATCC 33209 RepID=A9WTI5_RENSM Length = 403 Score = 329 bits (846), Expect = 8e-89, Method: Composition-based stats. Identities = 79/388 (20%), Positives = 134/388 (34%), Gaps = 22/388 (5%) Query: 16 CVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWL 75 IL L+ ++++ LAR ++ ++ + EL + T G Sbjct: 30 SAILSLIASNPASSRADLARKLNLAPSTITQRINELIEAGLIAESGAGGHTGGRRPTLLS 89 Query: 76 IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKL 135 + + L ++ N + + P+A+L I + + Sbjct: 90 LVADAGCILAADLGAAHAWVGRLNMSCALLDSSLISIDISAGPEAVLPIISEAMRSLIED 149 Query: 136 WPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLAL 195 + LA+ G VD G+ + + V+ L + VDND M+AL Sbjct: 150 DTPPLRGVGLALPGPVDFTRGMVDSPSRMRGWHQYPVRDWLSREFDTAASVDNDANMMAL 209 Query: 196 AEKWQNNSQE------RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGV- 248 E Q D + IG ++ Q+YRG+ SG I H V+ G Sbjct: 210 GEYSLRQRQNPDTKNRTDTLFLKAGAAIGCGLILQGQLYRGASGTSGDIAHVQVSAAGEL 269 Query: 249 VCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSW 308 C CG GCLETVAS +A+ Q E A +I +G+ T+ Sbjct: 270 PCACGHRGCLETVASGTAIVSQLIEAG----------VEVKDLADVIRFALNGDTQTTTR 319 Query: 309 VDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKA 368 + + +G +L +N +N + + L G + + + + K Sbjct: 320 LRAAGRLLGQTLSTVVNFINPSLVVLGGGLSQ-----VEPYVAAIRSQLYAGCHPLAAKN 374 Query: 369 TQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 I Q +LG G + A L Q Sbjct: 375 LLIEPSQAGSQAGLLGAGQQCLRAVLAQ 402 >UniRef50_A5N8K8 Transcriptional regulator n=31 Tax=Clostridium RepID=A5N8K8_CLOK5 Length = 317 Score = 329 bits (846), Expect = 8e-89, Method: Composition-based stats. Identities = 65/314 (20%), Positives = 128/314 (40%), Gaps = 9/314 (2%) Query: 81 DWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHR---KLWP 137 + + +++ T I + + + ++ + +L I K + + Sbjct: 4 KYVIGVDLGGTKIAAALVDFKGTIICKYTLPTKAEEGEKYILDNIIKIIEKVVNFGGVCS 63 Query: 138 DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAE 197 + L G +D G P P+ + L+ + + +DND A+AE Sbjct: 64 KKIKCIGLGAPGPLDIDKGKIICTPNLPFKN-FNIVSPLKNHFKMPIFLDNDGNAAAIAE 122 Query: 198 KWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYG 256 + + I V GIG ++N QIYRG+ + +IGH ++ G +C+CG +G Sbjct: 123 HMFGAGKGINNMVFITVSTGIGGGAILNGQIYRGNTKNALEIGHMTLDAQGPLCNCGNFG 182 Query: 257 CLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAI 316 C E +AS +A+ ++A+ +K +T + +T+ ++ Q G+ + +D + N + Sbjct: 183 CAEVMASGTAIAREAKKAVKMGYNTTLALYKNITSKEVFKEAQLGDSISQNILDTTLNYL 242 Query: 317 GLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQL 376 G+ + N + L+ + + G G+ + I F G K T+I L Sbjct: 243 GICVANIITCLDPEAVIIGGGVSKGGKIIFDKINEVVKRRCF----GTVSKNTRILPALL 298 Query: 377 SRAQQVLGIGYLYV 390 V+G L Sbjct: 299 GTDAGVIGAAALAF 312 >UniRef50_B8CYI5 Glucokinase n=1 Tax=Halothermothrix orenii H 168 RepID=B8CYI5_HALOH Length = 322 Score = 329 bits (846), Expect = 9e-89, Method: Composition-based stats. Identities = 80/324 (24%), Positives = 144/324 (44%), Gaps = 15/324 (4%) Query: 82 WTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEI---EKCWHRHRKLWPD 138 + + +++ T I +A+A + + + ++ I + + L + Sbjct: 4 YYVGVDLGGTKILTALADARGKIVAKKKLPTEARKGEEKVIQNIVSSIDAVLQEKGLSRE 63 Query: 139 HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEK 198 I L + G ++ G+ P W V +K +LEE+ GI V+++ND AL EK Sbjct: 64 DVITLGVGSPGPLNTQEGIIYLAPNLGWRN-VHIKDILEEETGIPVILENDANAAALGEK 122 Query: 199 WQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGC 257 W Q+ + I V GIG +IN++I+ G G+G++GH ++ P G VC CG GC Sbjct: 123 WFGAGQDVDNLIYITVSTGIGGGIIINKKIFHGINDGAGEVGHMVIEPGGPVCGCGNRGC 182 Query: 258 LETVASLSALKKQARVWLKSQPVS-----TQLDPEKLTTAQLIAAWQSGEPWITSWVDRS 312 E VAS +A+ K R +K + + DPEK+ + + A + G+ D++ Sbjct: 183 FEAVASGTAINKMGREAVKENKATLLMELSGGDPEKIDGSLIARAARQGDEVARKIWDKA 242 Query: 313 ANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIG 372 +G+ L N LNI N I L G G+ + + + + + + + +I Sbjct: 243 GYYLGIGLANLLNIFNPEMIILGGGVMNAGDLIMEPMKKSLKDHALE----SAFNSVEIR 298 Query: 373 FGQLSRAQQVLGIGYLYV-EAQLR 395 +L V+G + + + L Sbjct: 299 QAELGNDTGVIGAVAVAMGDRLLE 322 >UniRef50_D2PPF8 ROK family protein n=2 Tax=Actinomycetales RepID=D2PPF8_9ACTO Length = 414 Score = 329 bits (845), Expect = 1e-88, Method: Composition-based stats. Identities = 69/398 (17%), Positives = 140/398 (35%), Gaps = 20/398 (5%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 ++ +R N +L L +++ +A ++ V++I+ EL +++ + Sbjct: 19 TADHTDVRATNLAAVLGFLRANAPCSRAAIASGTGLNKATVTSIVGELIAQRLARETEQT 78 Query: 64 SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQI-DAPTPQALL 122 G + ++ + + V + ++ + +P + Sbjct: 79 QNHVGRPATLLVLDGSAYAAIGMEVGVRGLTAIAYDSAGGQLLRWHRSGPGPEASPAKTI 138 Query: 123 SEIEKCWH---RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + + + L + G +D G W V ++ L Sbjct: 139 AALAALARRAISAVHSSGRDVLGLTVGAPGLIDHD-GSVVLAAGLGWRD-VPLRSDLIAA 196 Query: 180 LG---IRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 LG VMVDND + ALAE ++ D ++ + G+G+ + + + RG Sbjct: 197 LGRPAFPVMVDNDANLGALAEHRYGDHAGTADLIQLSGETGVGAGVICDGRPLRGHHGYV 256 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLI 295 G+IGH + PDG VC CGR GCLE VA + A+ + P +L T QL+ Sbjct: 257 GEIGHLRIQPDGPVCGCGRRGCLEAVAGMPAILARLE------PADAPETDPQLRTEQLV 310 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF 355 + G+ + +G + +++L+ + L G G + I ++ Sbjct: 311 RRAEEGDTATLKALAEVGGLLGRGISVLVDLLDPELVVLGGSYAGLGRWLVPAIEQELA- 369 Query: 356 NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 D ++ +G ++ Sbjct: 370 ---DGALVTVSGRCRVVVSTFGHDATSIGAVARSLDRL 404 >UniRef50_C7PW32 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7PW32_CATAD Length = 396 Score = 329 bits (844), Expect = 1e-88, Method: Composition-based stats. Identities = 78/399 (19%), Positives = 154/399 (38%), Gaps = 12/399 (3%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 MR ++ +R N+ ++ Y + + +A +S+ I+ EL + + Sbjct: 1 MRPRLS-GDLRRANRVEVMRSFYGGRTLTRGDVAAQLGVSVATAGTIIGELTAAGLLAET 59 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYL-QIDAPTPQ 119 G + + + + +++ T + ++ + ++ G F+ P Sbjct: 60 QSPRSGGGRPASQLTMRAGAPYLVGVDLAETYVIAEIFDQAMTRVGHFQTPVAPTDDDPD 119 Query: 120 ALLSEIEK----CWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 +++ + + + +++ GQVD GVS P W V L Sbjct: 120 SVVGHVVDSVQGVIAALDGVSAADVAGVGVSLPGQVDREGGVSVHAPNWGW-HGVPFTSL 178 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYG 234 ++ + V++DN + LAE D V+N+ G+G V ++ RG Sbjct: 179 FHKRCDLPVLLDNPLKAITLAEMMFGEAGDHDDAVVVNLGTGVGLGVVAEGRLLRGRTNT 238 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQL 294 +G+ GHTI+ DG+ C CG GC+E +AL P+ D + T A+L Sbjct: 239 AGEWGHTILVADGLPCHCGSRGCVEAYVGAAALLDLLTDVDPDSPLLVPGD-QAATVARL 297 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTG 354 A S +P + ++R A +G++L N +N+LN + + G A + ++ Sbjct: 298 AEAVASADPVAVATLERFARPLGMALANAVNMLNPELLVVGGWVSAA---FGEPLLAAVE 354 Query: 355 FNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 A + +++ LG+ L E Sbjct: 355 PVVKQFSLAVPYDAVTLAASRIADNPVSLGMAVLAFETF 393 >UniRef50_UPI0001C357A7 transcriptional repressor n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C357A7 Length = 405 Score = 327 bits (840), Expect = 4e-88, Method: Composition-based stats. Identities = 70/405 (17%), Positives = 163/405 (40%), Gaps = 19/405 (4%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVN--- 59 N +++ N+ +I E++Y+ ++S +A + ++ P ++ + L V Sbjct: 4 RGTNLPRVKKQNEALIKEIIYKYGPISRSKIAEMLSLTPPTITTNVTSLIERGLVYEFAA 63 Query: 60 --IDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPT 117 D E ++ G E + + + + P + + + K Y ++ Sbjct: 64 DDSDVEERSLGRKPVKINFVQEAKYAVGVEMNPYHTAICMLDLRGNEKISMRYPPMNRTY 123 Query: 118 PQA--LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 + +L+ + P+ + + + + G V+P GV + + W + Sbjct: 124 VEEMDVLARNINKLIQDSGTEPEKILGVGVGLPGFVEPDVGVLRESFKTEW-NGKNIARD 182 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYG 234 L +L + V+++N+ + A+ E+ + + F + YGI + ++ G Sbjct: 183 LSRRLDLPVLIENNARVRAIGEEMFGKTLRPDSFAYYLISYGIACPLFVKNRMITGDNAS 242 Query: 235 SGQIGHTIVNPDGVVCD-CGRYGCLETVASLSALKKQARVWLKSQPVSTQL----DPEKL 289 +G+ GH +V+ +G C+ CG GCLE +AS A+ K+ + ++ + D E L Sbjct: 243 AGEAGHMVVDINGPKCETCGHNGCLEELASERAIIKKCKAAARAGVSTMLTELCPDIEGL 302 Query: 290 TTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 T ++ A + + ++ ++ + +G++L N +N+++ + + G N Sbjct: 303 TMKDVLMAEECNDAYVVKVMEEAVMYLGVTLANIINLISPPLVIVDGYMMKVKRN----- 357 Query: 350 IRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 RQ G + + +I F + G L ++ Sbjct: 358 RRQLLEETKKHIFGLNDQEIEIEFIDFNPLTGARGGAALAIKQLF 402 >UniRef50_Q67KQ9 Transcriptional repressor n=1 Tax=Symbiobacterium thermophilum RepID=Q67KQ9_SYMTH Length = 391 Score = 327 bits (840), Expect = 4e-88, Method: Composition-based stats. Identities = 74/393 (18%), Positives = 149/393 (37%), Gaps = 17/393 (4%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M N + ++ N+ +L + + ++ LA L +S PAV+ I+++L V Sbjct: 1 MPRPANARLMKQLNRQAVLSAIRDRGPISRVELAALTGLSQPAVTAIVRDLLDLGLVEEK 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFE-YLQIDAPTPQ 119 + G L P + L + + + +A+ + + E E L D P Sbjct: 61 GLGQSSGGRPPIMLLFNPAARFVLAVCLEGERLWGGLADLSGALQVEAEGVLSPDPHDPA 120 Query: 120 ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + + + + +A+ + G + G P W V ++ L + Sbjct: 121 RSVCDFLQGLIDRSGVEASRLAAVAVGVPG-IAHTEGTVSHAPSLGWWQEVPLRDRLRQC 179 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 G+ V+V+ND ++AL E +Q + +++V GIG+ +I+ ++RG+ +G++ Sbjct: 180 FGVPVVVENDVNLMALGEYFQGAGVGVANLALMHVSEGIGAGILIDGNLFRGARNAAGEV 239 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 G+ + P +G E S A+++Q + L P +L Sbjct: 240 GYLPLGPLSPRRPQ-DFGLFELHYSSRAIRQQLQAALPEAPGDDGRP-----VRRLRELA 293 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 ++G PW S + ++ + ILN + L G + G L+ + R Sbjct: 294 EAGLPWARSLFGDALRHWAHAVASITCILNPELVLLAGDAVDCGREGLSEVNRIVADLV- 352 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVE 391 +I F L + G + + Sbjct: 353 -------PDPPEIRFAVLGSRAALTGAVAMALS 378 >UniRef50_Q1GMG9 ROK domain protein n=6 Tax=Rhodobacteraceae RepID=Q1GMG9_SILST Length = 435 Score = 327 bits (840), Expect = 4e-88, Method: Composition-based stats. Identities = 81/391 (20%), Positives = 149/391 (38%), Gaps = 21/391 (5%) Query: 11 RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE---SQTR 67 R + IL+++ Q+ + +A+ +S V+ I EL + + I E R Sbjct: 45 RESGRQQILDVIRAQESIARIDIAQATGMSPATVTAITAELLAAGLIEEIAPELAPGARR 104 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ-ALLSEIE 126 G + L V+ I + + E + P L ++I Sbjct: 105 GRPRVALRLRGAARLIAGLKVSHHVISTVITDFVGQELASHEMPLVQGTMPVPELCAQIR 164 Query: 127 KCWH---RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIR 183 + + + L + G +D G V + +L Sbjct: 165 RALDLTCEKGGFSIEDLSGVGLGMAGMMDADRGFIYWSSSLEERN-VAFTAAISAELPCP 223 Query: 184 VMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 V +DND ++A AE + +F VI +++G+G VI++QIYRG+ ++GHT Sbjct: 224 VFLDNDANLVAKAEHLFGEGRTCDNFIVITIEHGVGMGIVIDQQIYRGTRGCGAELGHTK 283 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 V+ +G +C CG+ GCLE AL ++A + S+ + T A L + ++G+ Sbjct: 284 VHLEGALCQCGQRGCLEAYVGDYALLREANISSGSERHT--------TIASLFQSAENGD 335 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDE 362 S +DR+ + L N +NI + ++I L G +F + + +I + D Sbjct: 336 VVAKSILDRARRMFAMGLANVVNIFDPSKIILAGARLSFDYLYSDKLIEEMRQWVVQVDA 395 Query: 363 GPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 ++ G +E Sbjct: 396 PLP----EVMVHDWGDLMWAKGAAAYALEEV 422 >UniRef50_D0GID9 Putative xylose repressor n=1 Tax=Leptotrichia goodfellowii F0264 RepID=D0GID9_9FUSO Length = 398 Score = 327 bits (839), Expect = 5e-88, Method: Composition-based stats. Identities = 84/393 (21%), Positives = 168/393 (42%), Gaps = 13/393 (3%) Query: 7 NQQIRHHNKC--VILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 +++IR N+ ILE + + +++ LA+ +++ A+S +++L + ++ Sbjct: 6 SKKIRKLNRTDYRILEKVMKDSEVSRTDLAKEMELTSAAISKAIKKLMLQNIIMEHATLE 65 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 T G + ++ E + +N+ I ++ + + T + +L Sbjct: 66 STGGRPRKSLIVNKEYKKIIGVNLGAGFINIVASHLNGEII-QIRQRKFVYKTQEKVLDL 124 Query: 125 IEKCWHRHRKLWPDH-TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIR 183 + + + + + I + LA HG VD G P W ++++ LE K ++ Sbjct: 125 LYEGISDMVEKFGEESIIGIGLATHGLVDRKKGTVIFSPHFKWK-KLDIRRELERKFNLK 183 Query: 184 VMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 V+V+ND + AE ++F ++ + G+G++ +N +I+ GS Y +G++GH I Sbjct: 184 VIVENDVRAMLTAEHMYGCAGNMKNFMLLYIRNGVGAAIFLNGKIFEGSNYSAGEVGHFI 243 Query: 243 VNP-DGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 VN + C CG++GCLET S AL + L+ EK+T ++ + + Sbjct: 244 VNEKSTIQCRCGKFGCLETECSEQALINKVVWELEK--KDKNESKEKITIDKIYSRSKHK 301 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 E S V +A G + N LNIL+I+ + + G + ++N + + Sbjct: 302 EEPYYSIVKEAAYETGKVIGNILNILDIDNVVVAGDIIMTEKLYMNNFRKGVDRMILED- 360 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 K +I L + G L Sbjct: 361 ---FNKKVKIVSSALDDMIGIYGAISLVTSNLF 390 >UniRef50_C0GDS7 ROK family protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GDS7_9FIRM Length = 326 Score = 327 bits (839), Expect = 5e-88, Method: Composition-based stats. Identities = 73/318 (22%), Positives = 137/318 (43%), Gaps = 12/318 (3%) Query: 83 TLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLW---PDH 139 +++ T I +A++ + ++ ++ + + + Sbjct: 6 YAAIDLGGTKIYSVLADSKGDILAHTRLETRAREGSETVMDQMVSSVDQLLEKSGGKKEQ 65 Query: 140 TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKW 199 + + I G D + P + V+V+ L++KLGI V+ +ND AL E Sbjct: 66 LAKIGVCIAGFYDWEKRLLIHSPNMAGWSDVDVESRLQDKLGIPVIAENDANAAALGESR 125 Query: 200 QNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCL 258 + Q D I V GIG+ + + +IYRGS +G+ GH +V PDG +C CGR GCL Sbjct: 126 RGAGQGSGDMVFITVSTGIGAGLITDGKIYRGSRGFAGEAGHMVVKPDGPLCGCGRRGCL 185 Query: 259 ETVASLSALKKQARVWLKSQPVSTQLDP----EKLTTAQLIAAWQSGEPWITSWVDRSAN 314 ETVAS +A+ + A +++ + + K+T + AA + +P + + + Sbjct: 186 ETVASGTAIARIANEQMQNGRKTILSEITAQNSKVTAPDVFAAAKKKDPLAQEVLQGAIH 245 Query: 315 AIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFG 374 +G+ L N +N+LN I + G G++ + + + P+ + + Sbjct: 246 YLGIGLVNLVNLLNPQVIVIGGGVAEAGDDLFVPLRQIIAEHAV----PPAAASVTLRKA 301 Query: 375 QLSRAQQVLGIGYLYVEA 392 +L V G+ L E+ Sbjct: 302 ELGVEAGVAGMLCLLTES 319 >UniRef50_A1SG81 ROK family protein n=2 Tax=Nocardioides sp. JS614 RepID=A1SG81_NOCSJ Length = 400 Score = 327 bits (839), Expect = 5e-88, Method: Composition-based stats. Identities = 76/401 (18%), Positives = 144/401 (35%), Gaps = 25/401 (6%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVN- 59 M + ++R N +++ + + +++ L R +S VS+++ +L + +V Sbjct: 1 MAQGGSLGELRAANLALVISTIEQTGALSRADLMRRTGLSRSTVSSLVVQLLDQGVLVER 60 Query: 60 ---IDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAP 116 G +A ++V + +A + E Sbjct: 61 LDRGTPYKGRSGRPPILLELAALTGVVAGIDVGHRHVRVALARPDSTIVLERSVALDVDD 120 Query: 117 TPQALLSEIEKCWHRHRKLWP---DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVK 173 +P+ + + L I G VD + T P ++ Sbjct: 121 SPRESMDRVATLLDELLAESGHELSDVRGAGLGIPGPVDRGGRM--TSGILPTWRGLQPA 178 Query: 174 YLLEEKLGIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSL 232 L E+ G+ V ND + A E + RD + GIG+ +++ + G+ Sbjct: 179 AELAERTGVIARVHNDAHLGARGELAYGAACGHRDVIYVKASTGIGAGLIVDGHLVTGAT 238 Query: 233 YGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTA 292 +G++GH V+ +GV+C CG GCLET S L + + E+LT Sbjct: 239 GIAGELGHVQVDVNGVMCRCGSRGCLETEVSGPKLVELLQPAY----------DEQLTVP 288 Query: 293 QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQ 352 +++ QSG+ T ++ IG L N N+LN Q+ + G A I Sbjct: 289 RILELAQSGDAGATRALNDFGRRIGRVLANIANMLNPEQVVVGGGFGAA-PALQAGIRDA 347 Query: 353 TGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 + + A + G L +V+G + ++ Sbjct: 348 LDRY----SQPTTAAAITVLGGALGERAEVMGAIAVALDPL 384 >UniRef50_Q0SE61 Possible xylose repressor n=11 Tax=Actinomycetales RepID=Q0SE61_RHOSR Length = 400 Score = 326 bits (838), Expect = 6e-88, Method: Composition-based stats. Identities = 73/382 (19%), Positives = 137/382 (35%), Gaps = 18/382 (4%) Query: 18 ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIA 77 + L+ + ++ + L +S AV+ + L++ VV ++ T G Sbjct: 19 VFALIRAGQATTRTEIGTLTGLSRTAVAARVSSLQASGLVVEREEGVSTGGRPPVKLSFH 78 Query: 78 PEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEK---CWHRHRK 134 + L + + + + + + Q +P L+ I + Sbjct: 79 VQAGVVLSAAIGRSRTQLAICDLAGDVIVAEDVEQEIGTSPAELMPVIAQRLIALRESLG 138 Query: 135 LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLA 194 T+ + +++ G VD G S P V ++ L + V VDND ++ Sbjct: 139 ETAGRTVGIGISLPGTVDTERGCSLNSPMMSGWDGVPLQPFLADVTDAPVFVDNDANVMV 198 Query: 195 LAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT-IVNPDGVVCDCG 253 LAE+ D +I G+G+ V + RG+L +G+IGHT GVVC CG Sbjct: 199 LAERRGERRDFADMLLIKASTGLGAGLVSGGVLQRGALGAAGEIGHTKTAAAQGVVCRCG 258 Query: 254 RYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSA 313 GC+E VA AL + + + +I +G+ + S Sbjct: 259 DVGCIEAVAGGWALVRNLQEQGREVTH----------IRDVITLALAGDAEARRMIRESG 308 Query: 314 NAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGF 373 IG L +N+LN + + G + ++ + + + + QI Sbjct: 309 RQIGEVLSGAINLLNPEVVIVGGDMAQAYDTFVAGLRETL----YGNAIAVATQQLQILP 364 Query: 374 GQLSRAQQVLGIGYLYVEAQLR 395 V+G + ++ L Sbjct: 365 WTHGELSGVVGSATMALDHVLS 386 >UniRef50_C6A8T4 ROK family transcriptional regulator n=7 Tax=Bifidobacterium RepID=C6A8T4_BIFLB Length = 401 Score = 326 bits (837), Expect = 9e-88, Method: Composition-based stats. Identities = 76/379 (20%), Positives = 135/379 (35%), Gaps = 8/379 (2%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 R Q + +N+ L+ L+ A+++ +A+ ++ A+S I L + +V Sbjct: 4 RTTTEQQTLSEYNRARTLQYLHHHGIASRAQIAKALHLTPAALSKISNHLLASGAIVETG 63 Query: 62 DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL 121 S + L + + IE + + P E ++ T Sbjct: 64 ALEGKGNRRSIGLAVNARAFQVLGVKFARSLIEIGLFDLAGKPSFIRELPTVENTTIPQA 123 Query: 122 LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + + R P H + + +A+ G G + + V + E Sbjct: 124 IESLHAEIRRLLAEHP-HILAIGMAVPGPYLRDRGHTAVVSSMGQWRQVNFRAEFEHAFD 182 Query: 182 IRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + V+++ D ALA+ + N + + GIG + + + GSL + +IGH Sbjct: 183 VPVIIEQDARAGALAQYLFDPNPANENLAYYLLGEGIGLGVIDHGTVINGSLGAATEIGH 242 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 ++ +G CDCG GCLE S A+ + S E A+L A QS Sbjct: 243 VSIDVNGKACDCGNVGCLERYCSAVAIHEAMLGNGMLATDSRLTHREA--CAELFARAQS 300 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 G+ V+R +G N N ++I + GE L + G R Sbjct: 301 GDGQARELVERIGTFVGYGCVTICNAFNPSRIVIGDIVAQAGEPLLQRVREVVGE----R 356 Query: 361 DEGPSVKATQIGFGQLSRA 379 ++TQI L Sbjct: 357 VIPEITQSTQIELSALPTD 375 >UniRef50_B8D084 ROK family protein n=1 Tax=Halothermothrix orenii H 168 RepID=B8D084_HALOH Length = 378 Score = 326 bits (837), Expect = 1e-87, Method: Composition-based stats. Identities = 67/401 (16%), Positives = 146/401 (36%), Gaps = 27/401 (6%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ N + ++ N+ +I++ L +Q +++ L ++ +S +S+I +EL E +V + Sbjct: 1 MQRG-NMKLMKKINRALIIQTLSQQGPLSRADLTKITDLSPTTISSITEELIQEGLIVEV 59 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP-- 118 + G I PE + L +N+ + + N L +P Sbjct: 60 GEGESKGGRRPILLDINPEDFYILSVNIAVDVMYVYLFNLKFQVINSVHDLIKKPVSPNL 119 Query: 119 QALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 + L E+ + + + + + + + G ++ G+ + + ++ Sbjct: 120 DSQLKELVQKVVENSNIGKKNVVGMGIGATGIINKEKGLITYSASLGISD-YPLLDKVKR 178 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 + ++++ND + AL EK ++ +F I + IG +I+ +IYRG G+G+ Sbjct: 179 EYDFPILLENDTNLAALGEKKFGCGRQLTNFFYIMIGSAIGGGIIIDNEIYRGKFGGAGE 238 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 GH V DG +C+CG GCL V + ++R + D + Sbjct: 239 FGHITVEKDGPLCECGNQGCLNAVL-TPYITVRSREEFRKSFQEIIKDDNFDSCR----- 292 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCA-FGENWLNTIIRQTGFN 356 + +++ N+ + + I L G E + + + Sbjct: 293 -----------YHEFCEYLAMAITNYTKLFDPEAIVLGGEIARIAPERFYIDLEKYIKRM 341 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 + + VLG L + + Sbjct: 342 SLKGMNS----KIPVLPSSIRTNAVVLGGACLCFDNLYNNV 378 >UniRef50_A8F6K2 ROK family protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F6K2_THELT Length = 403 Score = 326 bits (836), Expect = 1e-87, Method: Composition-based stats. Identities = 82/403 (20%), Positives = 166/403 (41%), Gaps = 15/403 (3%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ + ++ HN+ ++L + + +++T+++ +SI +++NI L + Sbjct: 1 MKLTRDI--LKDHNEKIVLRTIRQMGEVSRTTISKKTGLSIASITNITSRLLEANLIKEN 58 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 G I + W + + V + V + +P E + A + A Sbjct: 59 RYGKSKGGRRPVLLGINEKHSWAIGVKVGYLYLYFVVTDLLGTPVLEQKIPLNTA-SYNA 117 Query: 121 LLSEIEKCWHRHRKLWP---DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 ++ +I + K+ + + +A+ G VD G+ ++ W V + +LE Sbjct: 118 VVEKIADFVNTIVKIPEYVDRKFLGIGVAVSGSVDSEHGIVKSSYILEW-GNVPIGPVLE 176 Query: 178 EKLGIRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 E++ V+V ND A+A + ++ I + G+G + ++ ++Y G G+G Sbjct: 177 ERIKAPVLVYNDVDSFAVAHYTIGRAKKYKNCIFITLGSGVGGAMILGGKLYTG-RGGAG 235 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVW--LKSQPVSTQLDPEKLTTAQL 294 +IGH V DG C CG YGCLE S +AL + + ++S + L E + Sbjct: 236 EIGHMTVICDGKKCSCGSYGCLEAEISFNALVDRIKKKTNIESLKNRSCLTTEDEAIHYI 295 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTG 354 A Q + D + +G+++ N +NI + + + G + F + +L I Sbjct: 296 HKALQIDREAVIEAFDEISVLLGVAIKNMINIFAPDYVLIGGEALEFRDLFLKKAILIAR 355 Query: 355 FNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 N F V + V G+ +E ++ Q+ Sbjct: 356 ENSFGDLGDDVVIDID----DMGEVAWVQGVILNLIEKEVFQV 394 >UniRef50_A1WMZ8 ROK family protein n=2 Tax=Proteobacteria RepID=A1WMZ8_VEREI Length = 372 Score = 326 bits (836), Expect = 1e-87, Method: Composition-based stats. Identities = 79/370 (21%), Positives = 149/370 (40%), Gaps = 11/370 (2%) Query: 34 ARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSI 93 AR S + ++ L E + + + + G + T ++ L +++ TS+ Sbjct: 2 ARRLAYSKSKANAMVAALLDEGVLDEVGLQESSGGRRAETLRLSESLGAVLGVDMDATSM 61 Query: 94 ECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHR---KLWPDHTINLALAIHGQ 150 + + ++ P +L+++ L I + + + G Sbjct: 62 QLALMRPDMAVLARQCETIDVRRGPGVILAQLCGLMRELMARCGLSSSQLIAIGMGVPGP 121 Query: 151 VDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCV 210 VD +G P P ++ L E V VDND ++AL + W+ DF V Sbjct: 122 VDFASGQLVNPPLMPDWDGFSIRDYLREAFVAPVFVDNDVNLMALGKLWRLQRTLSDFLV 181 Query: 211 INVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQ 270 I V GIG V + Q+YRG+ +G +GH V+ G C CG GC+E +A+ AL + Sbjct: 182 IKVGTGIGCGIVCHGQVYRGTNGSAGDVGHICVDQAGPRCHCGNQGCVEAMAAAPALVRA 241 Query: 271 ARVWLKSQPVSTQLDPEKLT----TAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNI 326 A + S + + + L A + G+ + R+ + +G L + +N Sbjct: 242 AIEVAQKGESSWLAERLQASGSLGIEDLAQASRVGDVAANILIQRAGSLVGQMLASVVNF 301 Query: 327 LNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIG 386 N + +++ G G +L ++ + + R S + +I L+ ++G G Sbjct: 302 FNPSHVFIGGLVADMGPLFLASVRQSV----YHRSLALSTRHLEIQCAPLADDAALVGAG 357 Query: 387 YLYVEAQLRQ 396 L ++ L Q Sbjct: 358 VLAMQESLTQ 367 >UniRef50_A5ZML3 Putative uncharacterized protein n=1 Tax=Ruminococcus obeum ATCC 29174 RepID=A5ZML3_9FIRM Length = 410 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 78/399 (19%), Positives = 158/399 (39%), Gaps = 22/399 (5%) Query: 1 MRACI--NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVV 58 M+ N+ + N+ +I +L+ + L+R ++ V+NI+ E + V Sbjct: 23 MKKGNGKNSITSKQFNRGLIFQLIATGTCNTRIELSRRTGLAKTTVTNIVAEFMEKGIVK 82 Query: 59 NIDDESQTR-GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPT 117 ++E G + +A + + + V T+I+ + + + E ++ T Sbjct: 83 ECEEELTEVCGRNPIILKVADQAPKIIGILVFRTNIQAVLCSLDMQI-FRTETIEFGELT 141 Query: 118 PQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 L+ + R + + + + +A G VD G+ P+ V +K ++ Sbjct: 142 GDILIQNAFELIDRMMEEEKN-ILGIGIASIGPVDIRNGIILNPPRFYGVKHVPIKEAIQ 200 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 +K + V D+D ALAEK + E+DF ++ V GIGS FV +++ Sbjct: 201 KKYNLPVYFDHDNNCAALAEKLFGIGKAEQDFLLLAVSNGIGSGFVCGGEVFHSHRGFET 260 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 ++GH +N G+ C CG GCLE AS ++++ + T L+ ++ Sbjct: 261 ELGHVSINCKGLQCSCGNRGCLEMYASSYVVREKLKKI-------TGLNLPYADYFKIHD 313 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 P + ++ I L + +N+L I L + E++ +++ Sbjct: 314 R-----PEVEDILEEMIQDISAGLVSIINMLQPEMIVLGYDGIDWPEDY----VKKLEIL 364 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 DR + + Q++G L V + + Sbjct: 365 INDRKIAQDGWNIPVKKAYFGKQAQLVGAAALVVNSIFK 403 >UniRef50_C9XQA7 Xylose repressor n=6 Tax=Clostridium difficile RepID=C9XQA7_CLODC Length = 408 Score = 325 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 73/399 (18%), Positives = 155/399 (38%), Gaps = 25/399 (6%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 ++ + IR N+ ++LE + + +++++A ++ +S I ++L E V I Sbjct: 21 IKLVTDKYTIREMNERLVLEQIIKNGPISRASIASTIGLNKATISAITKKLIDESLVHEI 80 Query: 61 DDESQT--RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPK--GEFEYLQIDAP 116 + T G + +L +++ I ++ + + +Q+ Sbjct: 81 GIGNSTHSGGRKPILLVFNKCAGISLSMDIGYDYIFSSLSYLDGTIINSKKLTDIQVSKD 140 Query: 117 TPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 L+ EI ++ + P I L LAIHG P +++ +L Sbjct: 141 NVIQLIDEIINSYNISKIDTPYKVIGLTLAIHGI--TCENKVLFTPYYN-LNEIDLYSIL 197 Query: 177 EEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 +K + ++N+ + ALAE + +++ G GS +IN ++Y G SG Sbjct: 198 SKKYDFPIHIENEANLTALAENTFSTV-HNSLLSLSIHSGFGSGIIINNKLYSGRNGMSG 256 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 +IGHTI+ P+G +C CG GCLE S + +Q S+ + K+ + + Sbjct: 257 EIGHTIIMPNGKLCPCGNRGCLEQYCSEKKVFEQL---------SSLENIPKIDSDIVKQ 307 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 + + + + +++ N + I+L + + L I + + Sbjct: 308 LYYEDNQNAKKVIHEFCSYLTIAINNAITTYAPEIIYLNSQIISDIPEILQ-ITKDMLVS 366 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 F++ I L + G + +++ L Sbjct: 367 SFNK-------GINIEISSLGSEASLYGGSAVNIKSFLN 398 >UniRef50_B2GIX7 Putative NagC family transcriptional regulator n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GIX7_KOCRD Length = 421 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 72/395 (18%), Positives = 147/395 (37%), Gaps = 22/395 (5%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 A + +R N+ +++ + ++ +AR ++ VS+I++EL + + Sbjct: 41 APGSQAALRLANRRRVVDAVRGLGAVTQARIARETALAPSTVSSIVKELTACDLLT---V 97 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 E G + L ++V + +A+ L + + +L Sbjct: 98 EPDHGGRRGQRVRFSASAGHLLGVDVGHRHVAVALADLNLEILAQRRAELSPRHGAREVL 157 Query: 123 SE---IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + + + + + + VD + P + ++V+ L Sbjct: 158 DVARGMADELRDELGIPAERVLRAGIGLPAPVDAQGRGLDSAVILPHWSGLDVRELAAHV 217 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 LG V+V+ND A++E + RD + V +G+G+ V+ +YRG+ +G+I Sbjct: 218 LGCPVVVENDANAGAVSEHALGAGRGARDMAYLKVSHGVGAGLVLGGTLYRGATGAAGEI 277 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH ++ +C CG GCLET S +A+ + R + + + ++ A Sbjct: 278 GHITLDERAGLCRCGNRGCLETFVSSAAVLELVRPSGQPVE----------SVSDVVDAA 327 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 +G+P + V + IG+ + N+LN + L G GE L + Sbjct: 328 LAGDPGCSRVVSDTGRVIGVVVAQLCNLLNPELVVLGGDLARAGELLLEPLRTAVDRYTL 387 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 ++ +L + G L E Sbjct: 388 HGSSP-----VRVVPSELGPRAHLTGALLLAREDT 417 >UniRef50_B3DR20 NagC-type Transcriptional regulator n=6 Tax=Bifidobacteriaceae RepID=B3DR20_BIFLD Length = 389 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 72/394 (18%), Positives = 133/394 (33%), Gaps = 21/394 (5%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 R + +R N+ +L +++ + LA + +S VS ++ +L E ++ Sbjct: 4 RLFGSQTSLREANRANLLASIHKFGAMTQVELAEVTGLSTATVSTLVHQLVDEDQLETKS 63 Query: 62 DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL 121 G + +A + L + + + + S E Sbjct: 64 TVRN--GRRATLVTLARHQGLGVGLWIARRHLTLSIVDFSKSIIAEHTLPLPLGHKADTT 121 Query: 122 LSEIEKCWHRHR---KLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 L + + + +A+ V P V++ L Sbjct: 122 LERAMLLINETLSSIDAEASELVGIGVAVAAPVATSDHTIAIPGILPGWDGVDITSPLRT 181 Query: 179 KLGIRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 + V VDND A E + +R+F I+ G+G+ VIN +I G +G+ Sbjct: 182 AFNVPVYVDNDANFAAYGESRMGVAAGKRNFVYISASDGVGAGIVINGEIMHGVTGLAGE 241 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 IGH V+P G +C CG GCL+TV + + L + V + +T L++ Sbjct: 242 IGHIQVDPLGAICSCGNRGCLDTVVAENRLVQLLSVTHGN-----------MTLDDLVSF 290 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNP 357 G+P + +A IG + ++ I L G+ G+ ++ Sbjct: 291 ANEGDPGCRRIIADAAVRIGQVAADLCISVDPEVIVLGGKLAMTGDVFIQPFNEALQRML 350 Query: 358 FDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVE 391 F P + LG +E Sbjct: 351 FPDAVAP----IDVLVSSHPDDNCALGGALCAIE 380 >UniRef50_C5CH81 ROK family protein n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CH81_KOSOT Length = 386 Score = 325 bits (834), Expect = 2e-87, Method: Composition-based stats. Identities = 76/394 (19%), Positives = 163/394 (41%), Gaps = 27/394 (6%) Query: 7 NQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQT 66 + R N +L +L +Q ++ L+R+ ++ VS+I++E + V + Sbjct: 6 PKDTRIKNAITLLHILLKQDGISRVELSRITGLTKTTVSSIIKEFLAAGIVEESPTKPNG 65 Query: 67 -RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEI 125 G + + I +TL +++ +I+ + +A + E L P ++L ++ Sbjct: 66 NVGKTPISLHIKKNAVYTLGVHLGRHNIKTVLMDASMKVLMESNGLSYKKNDPDSVLEKL 125 Query: 126 ---EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 + + + I G +DP TGV + P+ + + ++++K + Sbjct: 126 YLDINHIMEKAEKHGIKVGVIGIGIPGPLDPETGVIKCPPKFEGWINIPLGEIIQKKYKL 185 Query: 183 RVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V ++ND + ALAEKW ++ ++F I V+ GIG+ VIN+++Y+G+ G+IGH+ Sbjct: 186 PVWIENDANVAALAEKWHGGAKYLKNFVYILVNEGIGAGVVINDELYQGTHDYVGEIGHS 245 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 + G++ LE + + L Q + + + + ++ Sbjct: 246 LFYVH------GQFKYLEDLYGVDVLTSQIKSCGLNAH----------SIEDVANLLKAD 289 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 + S V SA + + + N +++LN +++ G A G + + F Sbjct: 290 NKIVYSIVRDSAKWLSIVVLNVIHLLNPQAVFIGGTMAALGNYLIQPVKEIVSQYLFGD- 348 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + T + ++S +G G L Sbjct: 349 -----QETDVKLSEISDNAVAIGAGIYATAKWLE 377 >UniRef50_C0ZJD3 Probable transcriptional regulator n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZJD3_BREBN Length = 392 Score = 324 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 63/396 (15%), Positives = 146/396 (36%), Gaps = 21/396 (5%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 + N++ ++ NK +L+ + + +++ +++ Q+S P VS ++ E+ E + + Sbjct: 5 KKTGNSKLVKKLNKEEVLQQVVLHGQISRADISKQTQLSRPCVSALVDEMIQEGLLQEVG 64 Query: 62 DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL 121 G + ++++ +A+ + + + Sbjct: 65 MGDSKGGRKPILLEYNYQAYAIAGAIFEGSTLDMAIADMKGEFLARYRKRLAQPANGETV 124 Query: 122 LSEIEKCWHRHR---KLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 + ++ R + + + + + + G +G P W ++ +E Sbjct: 125 IEDLAAGLDRLLRESGIPRERLLGMGVGLQGVTQRGSGTVSFSPSTGWMGS-PIQQTIEA 183 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 +LG+ V++DND M+ L E + + + V GIG+ +++ Q YRGS +G+ Sbjct: 184 RLGLPVIIDNDVNMMTLGEYVRGAGVGHTNVVYMYVGTGIGAGIILDGQFYRGSREAAGE 243 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 IG ++ P + G G ET S+ +++QA+ +L + + +LI Sbjct: 244 IGFMMIGPVHNRPN-GASGVFETHYSIPGIQEQAKGFLSDLQEGSSV------IEELIRH 296 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNP 357 + P + + N ++ILN + L G + I Sbjct: 297 AKH-NPEAEKLLADVYRHWAYGMANIISILNPEILILSGEMVHVDGEGVKQIHEWLREWV 355 Query: 358 FDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 + + L ++G + +EA Sbjct: 356 --------PEVPNLEKASLGERAGLIGAVHSVLEAF 383 >UniRef50_UPI0001C3141A ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C3141A Length = 397 Score = 324 bits (833), Expect = 2e-87, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 147/392 (37%), Gaps = 18/392 (4%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 R N+ +L LY + ++ LA +S P VS + EL V +D Sbjct: 4 RTQRRVNARQTNRFKVLRALYEHPGSTRTELAADTGLSRPTVSTVTDELVQAGIVAQHED 63 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 G +A + + L++ ++ V++ G P Sbjct: 64 TQPRTGRPPVLLSLASGAAYAVGLDMGHAHVQVAVSDLSGQILGHERSAADVDHAPVESF 123 Query: 123 SEIEKCWHRH---RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + H + D I + +A+ VD TG P V+ +E + Sbjct: 124 DLAGELVHGALGQAGVPLDRVIGVGMALAAPVDRATGTVFADGILPSWGRVQPAIEMEAR 183 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 L + VMV ND + AL E ++ + + + G+G V+ + Y G+ +G++ Sbjct: 184 LDLPVMVHNDANLGALGEHVFGAGRDVAEMMYVRLSAGLGLGLVLGGRPYGGTSGVAGEL 243 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 GH V P+G++C CG GCLETVAS +A+ + E ++ +L+ Sbjct: 244 GHVRVAPEGLICRCGNRGCLETVASSTAVARLL----------AHSRDEPVSVERLLELV 293 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 G+ V + +G +L +N+ N I + G A G+ L + Sbjct: 294 ADGDRGARRAVAEAGKTVGEALATVVNLFNPELIIVGGDLAAGGDALLAPLRTAIDEYAV 353 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYV 390 P+ A + G L +VLG L + Sbjct: 354 A----PAAGAVTVSLGALGDKAEVLGAVALVL 381 >UniRef50_D2Q094 Glucokinase, ROK family n=2 Tax=Kribbella flavida DSM 17836 RepID=D2Q094_9ACTO Length = 423 Score = 324 bits (833), Expect = 3e-87, Method: Composition-based stats. Identities = 65/321 (20%), Positives = 112/321 (34%), Gaps = 15/321 (4%) Query: 81 DWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWPDHT 140 T+ +++ T + V + + P+ I + H Sbjct: 30 ALTIGIDIGGTKVAAGVVDPEGNILDRLRRDT-PTKDPKETEDAIAEVVHDL--ESRHDV 86 Query: 141 INLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQ 200 I + + G VD P W ++ +E +LG+ V+V+ND A +E Sbjct: 87 IAVGIGAAGFVDGTRSSVLFAPHLAWRHE-PLRDAVERRLGLPVVVENDANAAAWSEWRF 145 Query: 201 NNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLE 259 Q + + GIG + + + + RG +G+ GH V P G C+CG GC E Sbjct: 146 GGGQGESHLVCVTLGTGIGGAILNDGALQRGKFGIAGEFGHMQVVPGGHRCECGNRGCWE 205 Query: 260 TVASLSALKKQARVWLKSQP-------VSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRS 312 AS +AL ++AR S + + DP ++ + + G+P ++ Sbjct: 206 QYASGNALTREARELALSGSPVAHNLLRAAEGDPRRINGPMVTELAKDGDPVAVELLEDV 265 Query: 313 ANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIG 372 +G+ L N L+ + G GE L R P + I Sbjct: 266 GRWLGIGLANLAAALDPGTFVIGGGVSDAGELLLAPAREAFKRTLTGRGFRPEAR---IV 322 Query: 373 FGQLSRAQQVLGIGYLYVEAQ 393 L ++G L E Sbjct: 323 RAVLGPEAGMVGAADLAREEA 343 >UniRef50_UPI0001C31CF6 ROK family protein n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31CF6 Length = 402 Score = 324 bits (831), Expect = 5e-87, Method: Composition-based stats. Identities = 76/397 (19%), Positives = 152/397 (38%), Gaps = 12/397 (3%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + +R N+ +L L R+ ++ +A A +S +N++ +L E + Sbjct: 4 TRRTTRDVRLGNRASVLYTLRREGPISRQDIAVRAGVSAATANNVVGQLLEEGVLGEAGQ 63 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 G + I P + +++ T++ ++ + L + + Sbjct: 64 MPSNGGRPASLTGINPGYGAVVGVDLGETAVRLELFDLALQRTLLVDTPVRAGEQGAEAI 123 Query: 123 SEI----EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 +E+ + + + + L + + G V+ P W + LLE+ Sbjct: 124 AELIAAGVERLLSESGVARERLLGLGVGVPGIVEDSGTSLVHAPSMGW-EGAPLAALLEQ 182 Query: 179 KLGIRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 + G+ V N L AE W + +D V + G+G+S + +YRG+ +G+ Sbjct: 183 RTGLPATVSNGAKALGTAEAWFGAAGEGQDVVVCLIGTGVGASLLQQGTLYRGASASAGE 242 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 GHT + DG C CG +GCLE A+ ++ W +T E+ QL A Sbjct: 243 WGHTTIVLDGDTCRCGAHGCLEAYVGAPAIVRR---WAAVSGEATAGLGEEEVIEQLAVA 299 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNP 357 ++G + +A +G + + +N++N ++I + G L ++R+ Sbjct: 300 AEAGGEQALEVLRETARYLGAGVSDLVNLVNPDRIVIGGWVGLRLGPLLLPLVREQARR- 358 Query: 358 FDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 R GP + + L LG + V+ Sbjct: 359 --RALGPPFERLTLDLCHLGPDAVALGAATMIVDRFF 393 >UniRef50_A6X1U5 ROK family protein n=3 Tax=Rhizobiales RepID=A6X1U5_OCHA4 Length = 417 Score = 323 bits (829), Expect = 7e-87, Method: Composition-based stats. Identities = 90/391 (23%), Positives = 168/391 (42%), Gaps = 15/391 (3%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 + N ++IR HN+ V+L+++ R + +ARL ++ A++NI+ EL SE ++ + Sbjct: 27 VTLGKNPERIRDHNRRVVLDVVRRHGPLGRMHIARLTHLTAQAIANIVDELVSENLLMQL 86 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 + RG + + PEG T+ + + T + V + P+ + I +P+ Sbjct: 87 GRLKKGRGQPPIQFAVNPEGAMTIGVEMGSTHMVTTVLDLSGKPRTQHVRP-IQDVSPER 145 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 L +++ K + +P + + + + G D S P + ++ +L E Sbjct: 146 LSTQLRKEVDAVKTSFPARLLGIGVVMPGPFDIEGMSSVGPTTLPGWSGIDAAAVLSEAC 205 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 G V+V+ND A+ E+ +F +I GIG + + +RG+ +G+IG Sbjct: 206 GESVLVENDANAAAVGERLFGAGHAISNFAMIYFGAGIGLGMIQDGAPFRGAFGNAGEIG 265 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 H ++ P+G C CG+ GCLET ASL L+++ E L Sbjct: 266 HIVITPNGRSCACGQKGCLETYASLHTLREKLHAAG----------IEDTDFDALEKLHG 315 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 + P + WV +A+ + + NIL+ I L G + ++ +I G P Sbjct: 316 NRNPVLMGWVQEAADHLAPMIAMIENILDPETIILGG---MLPDAIIDDLIWHMGGLPIS 372 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYV 390 + ++ GQ + LG L + Sbjct: 373 VASRRARALPRVIRGQTGQFTAALGAASLPM 403 >UniRef50_C5EFJ1 Xylose repressor n=3 Tax=Clostridiales RepID=C5EFJ1_9FIRM Length = 383 Score = 323 bits (828), Expect = 1e-86, Method: Composition-based stats. Identities = 73/399 (18%), Positives = 148/399 (37%), Gaps = 26/399 (6%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ + IR N+ I++ + +K+ +++ ++ ++ VS I++E S K V Sbjct: 1 MKISQT-KDIRSANRLTIIKHILNKKQISRARISEETGLNKATVSTIVKEWMSLKLVEET 59 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQID---APT 117 + G +A + + + +++ + + + + Sbjct: 60 TMGDSSGGRRPIILTLAAKAGYCIAIDIGARRLGLILTDLNNEIISRQSIPIEKQAFSHV 119 Query: 118 PQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 Q + I++ P I ++LA+ G +D GV + +P+ W +++K LLE Sbjct: 120 YQQIYIAIDRMIRE-IPPCPYGLIGISLAVRGIIDLD-GVIRFIPKLQWHN-IDIKSLLE 176 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 ++ + V +DND + A E + Q + V+ + I + N ++ RG L + Sbjct: 177 QRYHVPVYIDNDGNLAASMESRL-HPQYEELTVLCLTDVISCGMISNGRLIRGYLGFANA 235 Query: 238 IGHTIVNP-DGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 +GH +N + C CG+YGC E S L +A + L++ I Sbjct: 236 VGHHTINIQETKQCSCGKYGCWEQYCSDQYLLDEANLHLETPLE---------DIDGFIE 286 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 + P +D + + L N + +N I L + I++ Sbjct: 287 LVRKQNPLALGILDTYIKNLAIGLSNIIFFVNCEMIILNSHLIQSLPYLMPEIMKDIIL- 345 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 P +I L +LG +E Sbjct: 346 -------PITHTQEILISTLGNEAPILGASLKAIEEFFE 377 >UniRef50_D2PYX6 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PYX6_9ACTO Length = 396 Score = 322 bits (827), Expect = 1e-86, Method: Composition-based stats. Identities = 69/392 (17%), Positives = 139/392 (35%), Gaps = 23/392 (5%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 A + +R N+ +L ++ + + +A + +S VSN+++EL+ V Sbjct: 7 APGSQASLREANRERVLGVVRQHGPLTQVEIAAASGLSAATVSNMVKELDQAGLV---GL 63 Query: 63 ESQ-TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL 121 G + +A G + + +A+ E Sbjct: 64 SPSIRNGRRAVLVSLASGGGLLAGVAFGERDVRVAIASESREILAEQLMPLQADHVADDG 123 Query: 122 LSEIEKCWHRHRKLWP---DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 + + + + + + VD V+G + + P V V + Sbjct: 124 MERAARLLADLTESVGQRVEDIGAIGFGLPTPVDSVSGEAGSDAVLPGWRGVHVAEAMSG 183 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 L V++DN + AL E ++ + C I YG+G+ V+ +++RGS +G+ Sbjct: 184 YLRAPVVLDNTANLAALGELRAGALRDVQHGCYIKFSYGVGAGIVLGGEVFRGSAGTAGE 243 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 IGH ++ +G +C CG GCL+T AL L +I Sbjct: 244 IGHLTIDENGPICRCGNRGCLDTFVGSRALLNSLAASHG-----------PLRLRDVITR 292 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNP 357 +G+ ++ + +G+++ +N+ N I + G+ GE + + Sbjct: 293 ALAGDLGCRRVIEDAGRRVGVAVAGLVNLFNPEVIVVGGKLAEAGELVMLPLREALDRCA 352 Query: 358 FDRDEGPSVKATQIGFGQLSRAQQVLGIGYLY 389 + ++ +L VLG L Sbjct: 353 I----PSAAATVELRPAELGDTADVLGAIELA 380 >UniRef50_B8FTN1 ROK family protein n=3 Tax=Clostridiales RepID=B8FTN1_DESHD Length = 406 Score = 322 bits (826), Expect = 2e-86, Method: Composition-based stats. Identities = 66/388 (17%), Positives = 143/388 (36%), Gaps = 14/388 (3%) Query: 16 CVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWL 75 IL L+ + KS LA++A + + ++ ++ LE ++ + T G + Sbjct: 20 KKILGLILHKGGMTKSQLAKVAGLKLTTLNRMMLPLEKADLILPTETGESTGGRKPVIYD 79 Query: 76 IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKL 135 + P + + ++++ + + N + + + +PQA L+ I R + Sbjct: 80 VNPRRYYVIGIDISRLYSQVVLTNLKMELIEKDRFDMDRNSSPQATLNRILDWIGRVMEK 139 Query: 136 WPDH-TINLALAIHGQVDPVTGVSQTMPQA--PWTTPVEVKYLLEEKLGIRVMVDNDCVM 192 I + + G +D +G+ + +K ++EE+ G+ V++DN Sbjct: 140 RGHGYVIGVGIGTVGPLDRQSGIILNPENFEAQGWENIPLKAIVEERTGLPVIIDNGANG 199 Query: 193 LALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCD 251 LAE + + + +N GI + + + + R H +++ +G C Sbjct: 200 AVLAETRYGSGKGMKSVIYLNCGVGIRTGVISSGTLVRTINDADDTFAHMVIDVNGKPCH 259 Query: 252 CGRYGCLETVASLSALKKQARVWLKSQPVSTQLD-PEKLTTAQLIAAWQSGEPWITSWVD 310 CG GC+E +S+ A+ + + ++ +L + + + Sbjct: 260 CGNQGCVERYSSIYAIMEALAEEMPQGKDRRNHKADRPVSYLELCREAEENDTIARQVLQ 319 Query: 311 RSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQ 370 +A +G L NF+ +LN + L G + + + P K Sbjct: 320 NAAVRMGTGLANFIQLLNPGLVVLSGPLILHSQLFYEVCVEAAKRR------RPWDKGGH 373 Query: 371 IGFGQLS---RAQQVLGIGYLYVEAQLR 395 + F + +G L VE L Sbjct: 374 LVFSRGGAFEENAISIGAAALVVEHYLE 401 >UniRef50_C6B3W7 ROK family protein n=11 Tax=Rhizobiaceae RepID=C6B3W7_RHILS Length = 405 Score = 321 bits (825), Expect = 2e-86, Method: Composition-based stats. Identities = 78/399 (19%), Positives = 154/399 (38%), Gaps = 23/399 (5%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ + R N+ +IL LL R+ +++ +A + +S AV+ ++ +L E V+ Sbjct: 1 MKLKGDQTTARAMNRRLILNLLRREGPRSRADIATVIGLSPAAVTFVVADLLEEGIVIEG 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 G I E + + S+EC + +P + P Sbjct: 61 KTVPGLTGRRPIPVDINYEHALAVGFKLMVDSVECVATDLATNPVAAMRV-SLGGHDPDK 119 Query: 121 LLSEIEKCW---HRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 + + + + +++ G ++ + W V + L+ Sbjct: 120 VADLLASTVPELVKLAGRPNAKLAGIGISMPGVINHEQTACVRSYRFKW-DNVPLASLVA 178 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 ++ + V +++D A+A++ + R+ V+ V GI + VI+ ++YRG+ +G Sbjct: 179 SRVHVPVWLEDDTNAYAIAQQLFGLGRQHRNMAVLAVGVGISCALVIDGKLYRGANGAAG 238 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 + GHT+ +G +C+CG+ GCL S ++ ++ R E+L +L A Sbjct: 239 KFGHTLYEENGRLCECGKRGCLMAYHSEISMLRRWREATGR---------EELGLPELSA 289 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 A SG+ + V S IG +L N +NI + I G + + G+ +L + Sbjct: 290 ALASGDTTALALVADSGRGIGTALANLVNITDPEVIVAGGEAVSLGDPFLTPLREALSAR 349 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 F R P + G L + Sbjct: 350 TF-RTAPPLLPD-------WEDNSWARGAAALVTQKIFD 380 >UniRef50_C6W7D4 ROK family protein n=1 Tax=Dyadobacter fermentans DSM 18053 RepID=C6W7D4_DYAFD Length = 407 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 76/393 (19%), Positives = 158/393 (40%), Gaps = 19/393 (4%) Query: 15 KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTW 74 + +L LY+ + + +A+L SIP+ + I+ +L E + G + Sbjct: 20 RSSLLLHLYQNGDTSINKMAKLFHASIPSATGIVNDLMREGWITETGTGPARAGRPPVLY 79 Query: 75 LIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRK 134 + + TL +++ + + + + + + L E+ K Sbjct: 80 GLNSKKYLTLIMDINRHDTQLVIFDLHNQLILKRKVAIRLDDS-ANFLEELFASTDDFLK 138 Query: 135 ---LWPDHTINLALAIHGQVDPVTGVSQTMPQA--PWTTPVEVKYLLEEKLGIRVMVDND 189 + + +++ G ++ G++ T P V + L+E + V + ND Sbjct: 139 SNNISHSKLWGIGVSMPGLINSSQGINLTYLNLTPPG---VPLVTYLKEHFDLPVCLFND 195 Query: 190 CVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGV 248 + E + ++ IN+D+G+G +IN +++ G+ +G++GH V PDG+ Sbjct: 196 TKATTIGEHRFGYAVDKSQVLTINIDWGVGLGIIINGEVFNGASGFAGELGHIQVKPDGM 255 Query: 249 VCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQL-----DPEKLTTAQLIAAWQSGEP 303 +C CG+ GCL+T+ S AL +QA+ + S + D E+L T+ +I A +G+ Sbjct: 256 LCHCGKVGCLDTITSAIALIRQAKEGIHSGRATILKQIVNNDLEQLETSHIIEAVHAGDE 315 Query: 304 WITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEG 363 + + +G L +++ N I + G G N I + + Sbjct: 316 FSIDLLSTVGTELGKGLATAVHLFNPEVIIVGGLLAEAGPFISNPIEQAINKYCLSDFKN 375 Query: 364 PSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 P I +L ++LG + + + Sbjct: 376 P----LSIHISKLGSKARLLGTQAYLFDNLITK 404 >UniRef50_C6PY82 ROK family protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6PY82_9CLOT Length = 400 Score = 321 bits (824), Expect = 2e-86, Method: Composition-based stats. Identities = 67/395 (16%), Positives = 163/395 (41%), Gaps = 13/395 (3%) Query: 10 IRHH-NKCV-ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 +R N+ + L+++ ++ K ++ + +++ ++ +++ LE +K + T Sbjct: 5 LRELSNRELETLDIIQKKGLITKKSIQAITGMTLTTLNRVMKSLEDKKLISEAGISKSTG 64 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEK 127 G + + +A G + + ++++ T + + N ++ + E+ D+ +P+ + +I Sbjct: 65 GRKAVKYDVAQSGIYAIGVDMSRTYVRIVILNLKMTILEKKEFFMDDSFSPEKTVEKIGN 124 Query: 128 CWHR---HRKLWPDHTINLALAIHGQVDPVTGVSQTMPQA--PWTTPVEVKYLLEEKLGI 182 + + + + G +D GV + V ++ + E++ + Sbjct: 125 IIDEGLLKLSIDKSEVLGIGIGTVGPLDREKGVMINPKNFFNELWSNVPIRDMFEKRTSL 184 Query: 183 RVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 +DN LAE ++ ++ ++ GI S+ + N I R H Sbjct: 185 PCFIDNGTNAAVLAEYLFGKGKDFKNIVYVHCGIGIRSAVINNGIIIRTMRDSEDAFAHM 244 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 +V+ +G C CG GCL++ +S++A+ K LK+ T + ++ +++ + Sbjct: 245 VVDFNGEECSCGNKGCLDSYSSINAIVKSFNSILKNNNNDTNEEIKEEDYKKILELTVNN 304 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 +++ A +G+ L N + ILN + LYG + + N I + + Sbjct: 305 NKSAVEIINKGAEILGVGLANMVRILNPQLVILYGPLIKNYKLYYNKCIDAFNKSNCLNN 364 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 E G+ +G G + +E L++ Sbjct: 365 EVIFSDG-----GEFKGNAIAVGSGLIVIENYLKK 394 >UniRef50_D2PSG4 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PSG4_9ACTO Length = 393 Score = 321 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 84/394 (21%), Positives = 156/394 (39%), Gaps = 24/394 (6%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + + IR N ++L L +++ LA+ +S+P VS I+ EL V + Sbjct: 5 RVGSKELIREINSSLVLGELR-GGLVSRTELAKRTGLSLPTVSEIVGELIGTGVVEEREI 63 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 S G + P+ + + + +T T + + + + + + Sbjct: 64 ASSGGGRRPVLLGLKPDAGYVIGIKLTETRVVAVLTDLNAAIVQRATVAVANDDVDTVVR 123 Query: 123 SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 + K+ P + + + LA G +D +GV + + W V++ LLE++ G+ Sbjct: 124 TVAAVVKRFTAKVGPVYGVGVGLA--GMIDRASGVVRHATYSDWHD-VDLAALLEKRTGL 180 Query: 183 RVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V+VDND L E+W + D V+++ G+G V++ ++YRG+ G+G+ GHT Sbjct: 181 PVVVDNDVNTLVANEQWFGAGRGVSDVAVVSIGRGVGLGMVLDGRLYRGAGGGAGEFGHT 240 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 V PDG VC CG GCLE++ A+ + Q + + G Sbjct: 241 KVAPDGPVCACGARGCLESLIGEPAILTATGTS---------------SIEQAVDLARGG 285 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 + + D +G ++ N +N+LN I L G + L FD Sbjct: 286 DDAARAVFDHVGRTLGTAVGNLVNLLNPKLIVLAGEGTRASDLLLPGFDTALRQAVFDG- 344 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + ++ G L++ + Sbjct: 345 ---LQRDLEVVVDDWDDEAWAQGAAGLFLGELFQ 375 >UniRef50_UPI0001B57B53 transcriptional regulator n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B57B53 Length = 381 Score = 321 bits (824), Expect = 3e-86, Method: Composition-based stats. Identities = 88/383 (22%), Positives = 140/383 (36%), Gaps = 19/383 (4%) Query: 17 VILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLI 76 +L L+ ++ LAR + VS Q L S + + G + Sbjct: 8 RLLWLVAHGHATSRMDLARALGLPQSTVSVRTQALMSAGVLSESGEGRSAGGRRPKLLTV 67 Query: 77 APEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLW 136 E +V + + E + P+ L++ + Sbjct: 68 NAEFGHVWAADVGSRHVRIGALDIAGRLLEVHERPLDISQEPRELVAGLAAAVRDVMAGA 127 Query: 137 --PDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLA 194 P + L +A G VD G + P V+ L E + V+VDND MLA Sbjct: 128 DCPGRALGLGVAFPGPVDVDAGTITLPSRMPGWRGFAVRAALAEHFELPVVVDNDANMLA 187 Query: 195 LAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV-NPDGVVCDCG 253 L E R V+ GIGS V+ ++YRG +G I H V + C CG Sbjct: 188 LGESVAGAP-GRTLLVVKAGTGIGSGIVLGGELYRGRAGVAGDISHVRVPAAEDQPCTCG 246 Query: 254 RYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSA 313 GCLE VAS +AL Q + TTAQ++A + G P T+ V R+ Sbjct: 247 NRGCLEVVASGAALVGQLQAQGLKLE----------TTAQVMATAEDGHPEATTAVRRAG 296 Query: 314 NAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGF 373 +G L +N N +++ L G E ++ + ++R + + +I Sbjct: 297 LRLGEVLATVVNFSNPDEVLLGGALSGS-EAFVAAVRGAL----YERCLPLATRELRIDR 351 Query: 374 GQLSRAQQVLGIGYLYVEAQLRQ 396 + + G G L ++A Q Sbjct: 352 VRFGADAGLYGAGALALDAVFEQ 374 >UniRef50_C9ZFY3 Putative xylose repressor n=2 Tax=Streptomyces RepID=C9ZFY3_STRSW Length = 406 Score = 321 bits (823), Expect = 4e-86, Method: Composition-based stats. Identities = 78/401 (19%), Positives = 150/401 (37%), Gaps = 24/401 (5%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 R N Q +R N +L + + +++ +A ++ AVS ++ EL + + Sbjct: 16 RLPDNQQGMRRRNLARVLHAVNAEGPLSRAAVASRIGLTRAAVSTLVDELIRSGLLEELG 75 Query: 62 DESQTR-GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGE-FEYLQIDAPTPQ 119 E R G ++ G + + + + + +P+ Sbjct: 76 PERPGRVGRPGSALALSGRGPAGIGAEIGVDHLAVCAVDLRGEVRARAVRQGTNRGRSPE 135 Query: 120 ALLSEIEKCWHRHRKLWPDH---TINLALAIHGQVDPVTGVSQTMPQAPWTT-PVEVKYL 175 ++ ++ + + LA+A+ G V P W + Sbjct: 136 PVVDDLTRLVRQVVAEAESEGLWPAGLAVAVPGLVASDARTVVRAPNLDWHDTDLGALLP 195 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 G+ V VDN+ LAE W + DF ++ + GIG + V++ ++ RG+ + Sbjct: 196 GGLPGGLPVTVDNEANFGGLAELWLGDGTPPDFLHVSAEIGIGGAVVVDGRLLRGTRGFA 255 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLI 295 G++GH V P+G C CG GCLE A A+ + A L+P + L Sbjct: 256 GELGHVPVRPEGPACACGGRGCLEQYAGEEAVLRAA-----------GLEPAEHRVEFLA 304 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF 355 +G+ + + + A+G++L +N+L+ + L G A L ++ R+ Sbjct: 305 ERAAAGDKEVHRALRGAGTALGIALTGAVNLLDPETVVLGGALAALAPWLLPSLERELAR 364 Query: 356 NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 + A + +L +LG + V A L Sbjct: 365 RT-------AGPACAVTVSRLGSDGPLLGAAHSVVRAVLDD 398 >UniRef50_Q1IJT5 Glucokinase n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IJT5_ACIBL Length = 347 Score = 320 bits (822), Expect = 4e-86, Method: Composition-based stats. Identities = 57/322 (17%), Positives = 125/322 (38%), Gaps = 13/322 (4%) Query: 82 WTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKL--WPDH 139 + + +++ T++ + + + ++ ++ Sbjct: 3 YAIGVDLGGTNLRIAAVEERGTLLEKVTLGTQVQRGREYVVGQMTDAIRHVTTKYQDHGK 62 Query: 140 TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKW 199 I + + + G +D TG + P P + V +E +LG +V+++ND A+ EKW Sbjct: 63 LIGIGIGVPGFIDMDTGTVRESPNLPGWSNYPVHKDIESRLGTKVILENDANAAAMGEKW 122 Query: 200 QNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCL 258 ++ D + + G+G ++ +++ G +G++GH V PDG +C CG +GCL Sbjct: 123 LGAGRDTDDMVMYTLGTGVGGGIIMAGRLWHGMNGMAGELGHHTVLPDGHICGCGNHGCL 182 Query: 259 ETVASLSALKKQARVWLKSQPVSTQLDPEKLTTA----QLIAAWQSGEPWITSWVDRSAN 314 E AS +A+ + AR + + + + + G+ + + Sbjct: 183 EQYASATAVVRMAREAVANGLSDALANASRNDVEFSSKVIYQLAIQGDKAAQEIFNTVGH 242 Query: 315 AIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF------DRDEGPSVKA 368 +IG+++ N +N LN + G + + + N ++ + F K Sbjct: 243 SIGIAVANMVNALNFPMYVIGGGVASAWDAFHNPMMEEVRKRSFIYRVTAPEAVAAGQKR 302 Query: 369 TQIGFGQLSRAQQVLGIGYLYV 390 T + L + G L + Sbjct: 303 TIVTRALLGGDAGLFGAARLPM 324 >UniRef50_D2Q6V0 N-acetylglucosamine repressor n=2 Tax=Bifidobacterium dentium RepID=D2Q6V0_9BIFI Length = 390 Score = 320 bits (821), Expect = 7e-86, Method: Composition-based stats. Identities = 71/394 (18%), Positives = 140/394 (35%), Gaps = 21/394 (5%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 R + +R NK +LE +++ + LA + +S VS + +L E ++ + Sbjct: 4 RTNGSQTSLRRANKANLLESIHKFGAMTQIELAEITGLSTGTVSTQVHQLVEEGKLETHN 63 Query: 62 DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL 121 G + ++ + + L++T + + + E Sbjct: 64 TIRN--GRRATLVALSHDQGLGVGLSITRRDLFLVIIDYSKDIIAEHRLPLPPKHKADTT 121 Query: 122 LSEIEKCWHRH---RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 L + + + + +A+ VD + P +++ L Sbjct: 122 LERAIRLINETLENAGTDAGEIVGIGVALGAPVDFHAQTAAIPGILPGWDGIDIHTPLTT 181 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 + VMVDND A+ E + +++F I + G+GS ++N I G +G+ Sbjct: 182 AFHVPVMVDNDANAAAICEARMGVALGKQNFVYIGTNDGVGSGIMVNGDIMHGVTGLAGE 241 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 IGH V+P G +C CG GCL T+ + L V + +T L+ Sbjct: 242 IGHIQVDPLGSICSCGNRGCLNTIVDEARLVSLLSVTHGN-----------MTMEDLVQT 290 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNP 357 +G+P + +A IG + ++ + + G G+ ++ Sbjct: 291 ANAGDPGCRRVIADAAVRIGTVASDLCISVDPEMVVVGGSLAMSGDTFIEPFSETLQRLL 350 Query: 358 FDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVE 391 F P Q+ Q + LG + +E Sbjct: 351 FPNALTP----IQVLAAQYPDSGSALGAAIMVIE 380 >UniRef50_D1NUM3 Transcriptional repressor in the Rok family protein n=1 Tax=Bifidobacterium gallicum DSM 20093 RepID=D1NUM3_9BIFI Length = 417 Score = 319 bits (820), Expect = 9e-86, Method: Composition-based stats. Identities = 64/395 (16%), Positives = 126/395 (31%), Gaps = 8/395 (2%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 ++ + HN+ +L +Y +++T+A+ +++ A+S I +L + D Sbjct: 22 TQVSRATLSEHNRSRVLHHVYHHGPVSRATIAKALELTPAAISKITAKLIEAGLLEETGD 81 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 S + + T + V + + E ++ L Sbjct: 82 MQGEGRRRSIGLRMNKSAFHVASVKFARTLVCIGVYDLAGNQLSMQEITAVEHTQIPETL 141 Query: 123 SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 + + I + +A+ G G + + V L + Sbjct: 142 DTVHSMLEKLLAKDR-RIIAIGMAVPGPYLRAVGRTAMVSSMQEWRAVNFIDEFSHSLSV 200 Query: 183 RVMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V ++ D L+ + +R + G+G + ++ G L + +IGH Sbjct: 201 PVFIEQDARAGVLSYRLFGQGDADRHLAYYLLGEGVGLGVIDGDETINGELGAATEIGHV 260 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 ++ +G C+CG GCLE S ++ ++ + E L SG Sbjct: 261 SIDVNGRSCECGNVGCLERYCSAVSIHEELNESGIVADSESMTHREA--CEALFRLAASG 318 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 + V R +G +N N ++I + G+ L+ I R R Sbjct: 319 NSQAVAMVQRIGTYVGYGAVTIINTFNPSRIIVGDIVSGGGDLLLSAIRRVVD----ARI 374 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 T I S G + VE L Sbjct: 375 LPELNARTTIVLADASADASTKGAAGVAVEHFLAN 409 >UniRef50_B0MWK5 Putative uncharacterized protein n=1 Tax=Alistipes putredinis DSM 17216 RepID=B0MWK5_9BACT Length = 410 Score = 319 bits (819), Expect = 1e-85, Method: Composition-based stats. Identities = 71/400 (17%), Positives = 157/400 (39%), Gaps = 18/400 (4%) Query: 6 NNQQIRHHN---KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 N + I H N K I+ + S L + IS+P ++ ++QEL E V ++ Sbjct: 15 NLKGISHKNNLFKRNIIAHMAVNGECTLSELTKELHISVPTITKLVQELVQENIVSDLGK 74 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 G + +A + +N+ ++ + + + E + L Sbjct: 75 VETPGGRRPNVFGLASSAIYFAGVNIGRDNMSFLITDLHNNIVKEELLTDFELQDRPQCL 134 Query: 123 SEIEKCWHRHR---KLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 +I + + + +++ G+V+P TG S ++ ++ ++E++ Sbjct: 135 EKICSNIAHFIDTCGVERAKILGVGVSVSGRVNPTTGRSYRYFT---SSEQSLRDMIEQR 191 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQI 238 +GIRV+++ND AE + S++ D +++ G+ V+N ++Y G +G+ Sbjct: 192 IGIRVLLENDSQARCYAEYTNSKSKDEMDVLYLHLGRGLAIGIVMNGKLYYGKSGFAGEF 251 Query: 239 GHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDP----EKLTTAQL 294 GH + ++C CG+ GCLET S A++++ + + + E + ++ Sbjct: 252 GHIPFFDNEIICSCGKKGCLETEVSGIAIEQKFGRLISQGVNTILREKYNKHEAIHVDEI 311 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTG 354 I A + + ++ G ++ +N N + + G G+ + + T Sbjct: 312 IDAAKHDDNLSIELIEEVGEKAGKAVAFLINTFNPETVIVGGELAEAGDYLMLPLKSATN 371 Query: 355 FNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + K T+ ++ + G L L Sbjct: 372 KYSLN----LVYKDTKFRLSKMGKTASAWGAAMLIRNQVL 407 >UniRef50_UPI000178996E ROK family protein n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI000178996E Length = 317 Score = 319 bits (819), Expect = 1e-85, Method: Composition-based stats. Identities = 64/316 (20%), Positives = 122/316 (38%), Gaps = 10/316 (3%) Query: 77 APEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLW 136 + ++ + +++ T I + ++ + A T + +++ I Sbjct: 6 NKQQEFVVGVDLGGTKIAAALFDSEGQLLNREQMETAGARTAEEVVARITNMIRSVSGGH 65 Query: 137 PDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALA 196 P + +A G V+ G+ P T V +K +E L V V ND A Sbjct: 66 P--LRGVGMASPGTVNSREGIVIHGTNLPEWTNVPLKAWMERDLNTEVQVLNDANAAAWG 123 Query: 197 EKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRY 255 E + + + + + GIGS V++ +++ GS +G++GH I++P G C+CG + Sbjct: 124 EYVRGAGRGSTNMVYVTLSTGIGSGIVLDGKLFLGSNSFAGELGHHIIDPSGPQCNCGSH 183 Query: 256 GCLETVASLSALKKQARVWLKSQP---VSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRS 312 GC E AS +A+ A + +Q + + A + +P +DR+ Sbjct: 184 GCWEVFASGTAIGLAASQRMLTQTSVISELAAADGGVNARHVFEAKRLHDPVAVEVIDRA 243 Query: 313 ANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIG 372 + L L N ++ N ++I + G GE + T G +I Sbjct: 244 VYYMALGLVNVIHSFNPDRIVVGGGVSRAGELLFPQLREMTDKLVMPSYLGTY----EIV 299 Query: 373 FGQLSRAQQVLGIGYL 388 L ++G L Sbjct: 300 PAGLRDDVGLVGAAAL 315 >UniRef50_B9K724 ROK family protein n=1 Tax=Thermotoga neapolitana DSM 4359 RepID=B9K724_THENN Length = 388 Score = 319 bits (818), Expect = 1e-85, Method: Composition-based stats. Identities = 75/397 (18%), Positives = 158/397 (39%), Gaps = 28/397 (7%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD-ES 64 N+ +I+ NK IL++++ ++S ++ + ++ +V+ + +EL E + I Sbjct: 14 NSPRIKILNKKTILKVIHENHPLSRSDISEITGLTPSSVTRLTKELIDEGYIREIGTMGK 73 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 + G + E +L ++ + + + P+ Sbjct: 74 NSPGRRRVLLDLKKEAFLSLVFDIGVNITTYGIGFFDGEVELRGTFNTPK--NPEEFFKT 131 Query: 125 IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184 + + R + ++ ++ G VD P W V ++ LLE + + V Sbjct: 132 AREIYERISR--EHSITRISFSVPGMVDLEEKKILLAPNLGWEN-VNIEDLLE--VDVPV 186 Query: 185 MVDNDCVMLALAEKWQNN--SQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 + DN+ + LAEK+ + + I + G+G+ +++ +I+RG + +G+ GH Sbjct: 187 LADNEANLSMLAEKYHSEDLRNVEEAVFIIIREGVGTGLMVDGKIFRGPSFTAGEAGHMT 246 Query: 243 VN-PDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 VN C C +GC E V+S++ +Q L+ + + + A Q Sbjct: 247 VNMYSDRQCHCSNWGCWELVSSINWAIEQYGKELEGRN----------SIEKFQALKQKN 296 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 + + R A I + + N +NILN + L G G+++ +II R Sbjct: 297 D--AKRVLMRFAENIAVGIVNLVNILNPELVILGGEVVDLGDSFF-SIIEDFVRQ---RA 350 Query: 362 EGPSVKATQIGFGQLSRAQQ-VLGIGYLYVEAQLRQI 397 +V+ +I ++G L VE + ++ Sbjct: 351 LKAAVRNLKIRPTAFRNISSNLVGAAVLAVEDIIEKV 387 >UniRef50_B0PG67 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PG67_9FIRM Length = 398 Score = 319 bits (818), Expect = 2e-85, Method: Composition-based stats. Identities = 74/394 (18%), Positives = 148/394 (37%), Gaps = 11/394 (2%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 N Q ++ N+ ++L++L ++ +A A +S +NI+ +LE+ + Sbjct: 6 RGGNAQDMKTRNRLLVLQMLCTYGPLSRGEIAARAGLSKMTATNIISDLETAGLIAEEKG 65 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 ES G G ++P + + E +A+ +A L Sbjct: 66 ESAGAGRRPGLIRLSPASPLVCGITIGRRRCEAVLADLSAQIVARESACYDNALDGPRLS 125 Query: 123 SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 + + R K + +A G +D G P + V+ +L + G+ Sbjct: 126 ELLARLCSRLLKRVDRPVAGIGVAALGPLDARAGTLLNPPNFYGIGHLPVRAILSDASGL 185 Query: 183 RVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 ++ +D ALAE+ Q F + + GIG+ V++ ++ G SG++GH Sbjct: 186 PCVLLHDVSAAALAEQLYGAGQAFESFFYLQIRDGIGAGMVLDGALFDGVAGLSGELGHV 245 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 +N +G C CG GCLE AS AL AR + + + I+A +G Sbjct: 246 SINFEGPQCACGGRGCLECYASERALLAYAREYAARTGTAAPE-----NWSDAISAAGTG 300 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 + + ++R + +L N L +++++++++ + + + R +R Sbjct: 301 DAACAAALERYCGYVAAALSNALCLIDVHRVFV-----GYDGDGGGLLERLLEQRVNERL 355 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + + V G L Sbjct: 356 HIAGCRRITVRRSSFGSDASVYGAAALAARCVFD 389 >UniRef50_C5RVI1 Glucokinase, ROK family n=11 Tax=Thermoanaerobacterales RepID=C5RVI1_9THEO Length = 315 Score = 318 bits (817), Expect = 2e-85, Method: Composition-based stats. Identities = 65/313 (20%), Positives = 130/313 (41%), Gaps = 11/313 (3%) Query: 85 CLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCW---HRHRKLWPDHTI 141 +++ T I + + + + + P+ ++ IE+ + L Sbjct: 7 GVDLGGTKISTGLVDEKGNIIRSTKIPTMAEKGPEEVIKRIEQSVYDVLKEAGLKLSDLK 66 Query: 142 NLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQN 201 + + G +D GV + P P V + +L KLG++V ++ND A+ E Sbjct: 67 GVGIGSPGPLDAKRGVVISPPNLPGWDNVPIVDILSHKLGVKVKLENDANAAAIGEHLFG 126 Query: 202 NSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLET 260 + +F I V GIG +I ++Y G + +IGH +N +G C+CG YGC E Sbjct: 127 AGKGIDNFVYITVSTGIGGGVIIEGKLYSGENSNAAEIGHHTINFNGPRCNCGNYGCFEA 186 Query: 261 VASLSALKKQARVWLKSQPVSTQLDPEK---LTTAQLIAAWQSGEPWITSWVDRSANAIG 317 AS +A+ + A+ +++ + D K + + + A + G+ + VD A +G Sbjct: 187 FASGTAIARFAQEGIQNGKDTMIRDLAKDGVVKSEHVFEAAKLGDEFAKELVDNEAFYLG 246 Query: 318 LSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLS 377 + + N + N +I + G + + ++ + P+ + ++ +L Sbjct: 247 VGISNIMAFYNPKKIAIGGGVSTQWDMLYDKMMETIKK----KALKPNAEVCEVVRAELG 302 Query: 378 RAQQVLGIGYLYV 390 VLG L + Sbjct: 303 ENVGVLGAAALLL 315 >UniRef50_C6P958 ROK family protein n=2 Tax=Thermoanaerobacterales RepID=C6P958_CLOTS Length = 382 Score = 318 bits (816), Expect = 2e-85, Method: Composition-based stats. Identities = 63/392 (16%), Positives = 133/392 (33%), Gaps = 27/392 (6%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 N I++ N +L+++ + + ++ ++++ +S VS I+ EL E V Sbjct: 5 RKGTNYLIKNINTANVLDVIKKMQPISRIKISKVLNMSKSTVSGIVDELIKEGLVSEEGY 64 Query: 63 ESQT-RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL 121 T G P +++ +++ T+ + N + + Sbjct: 65 GKTTSAGRKPIELTFNPNAKFSIGIDIESTNTIGVLTNLEGKIIKKIKRPTGVK---DEA 121 Query: 122 LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + + + G + G P W + L+E Sbjct: 122 FDNAVDIIRELLDCQKE-ITGIGVGAPGITNIEKGTV-YAPGLSWVD-FNLLPKLKEVFD 178 Query: 182 IRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + +DN AL E+W + ++ +F ++ + GIGS IN ++ RG Y +G++G+ Sbjct: 179 YDIFIDNSVNYAALGERWIGSCKDVNNFVLVTIGNGIGSGIYINGKLVRGHKYSAGEVGY 238 Query: 241 TIVNPD--GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAW 298 + D YG E+ ASL L + + + T I + Sbjct: 239 MAIGRDILNKKYFYEDYGYFESKASLLGLVSSLK---------NLSNGKFNTMEDFINGY 289 Query: 299 QSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPF 358 + + + + + N ++ILN I + G G N + + R Sbjct: 290 LAKDEICIRAFNEFIENLSMGFTNIISILNPELIVIAGDVINLGINIVENLKRLIDKMIP 349 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYV 390 +I + +L+ +G + Sbjct: 350 F--------DVKIIYTKLNEDAAAIGASADVL 373 >UniRef50_C0D3V9 Putative uncharacterized protein n=1 Tax=Clostridium asparagiforme DSM 15981 RepID=C0D3V9_9CLOT Length = 386 Score = 318 bits (816), Expect = 3e-85, Method: Composition-based stats. Identities = 76/402 (18%), Positives = 147/402 (36%), Gaps = 39/402 (9%) Query: 1 MRACINN---QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRV 57 M N + IR N+ +IL ++ ++ +++ LAR +S VS+I+ EL +K + Sbjct: 6 MAKGGNPRHLELIRRINRSLILNMVKERQPVSRAQLARALNLSKTTVSSIVDELVRKKLL 65 Query: 58 VNIDD--ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDA 115 V D S G S P + + +++ ++ + + E + Sbjct: 66 VEYGDCCPSGGAGRPSVMLGFNPRSAYCIGIDIASANLRLIITDLAGEALYETKRPPSSR 125 Query: 116 PTPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 L+ +E+ L + + + + G V G W+ +K L Sbjct: 126 MG--ELIGVVEEAVRDC-GLKMEAVFGMGIGVPGIV-TAEGSVVRAKFLGWSN-FPLKRL 180 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYG 234 +EE V V+N + AL E+W + Q D + + GIG + + Q+ G+ Sbjct: 181 MEEHFPFPVFVENGVNLAALGERWLGSGDQVDDMLFVRIGTGIGGAVICGGQLIHGAGGN 240 Query: 235 SGQIGHTIVNPD---GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTT 291 +G+IG+ + + D G V G+ G LE S +AL R T Sbjct: 241 AGEIGYFLESRDVELGNVNQPGQQGVLERKCSGAALTGHGRP-----------------T 283 Query: 292 AQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIR 351 +L AA+ G+ V+ + +++ N +++L + + G + + Sbjct: 284 EELFAAYGQGDREAARVVEPFIRDLSVAIANCVSLLGPAKAVIGGDVSEQMSPVIYRLRE 343 Query: 352 QTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 + R + L LG + + Sbjct: 344 EVERLTPIRA--------DVCLASLGGRAGALGAVFHAMTEV 377 >UniRef50_C9Y7Z7 Putative uncharacterized protein n=1 Tax=Curvibacter putative symbiont of Hydra magnipapillata RepID=C9Y7Z7_9BURK Length = 413 Score = 318 bits (816), Expect = 3e-85, Method: Composition-based stats. Identities = 73/406 (17%), Positives = 144/406 (35%), Gaps = 53/406 (13%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ + Q ++ N+ V+L L Q +++ LA + ++ VS +++EL E V Sbjct: 22 MKTTGDQQLVKRINRSVLLRQLRAQPGLSRAQLATESGLTKSTVSLLVRELIDEGWVTET 81 Query: 61 D-DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ 119 D +Q++G S I + + V ++ + E P+ Sbjct: 82 DVTTTQSQGRPSTPLHIDTRSRGLIGVEVAVEALRVVGVSLTGQVLCAAEEALN-GTKPE 140 Query: 120 ALLSEIEKCWHRHRKLWPDH---TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 + + + R K + + + + G D TG+ + P W V++ + Sbjct: 141 DVCRQAARLIARTYKQLQQRNIEALGVGVGLPGAFDEATGMLRFAPNLGWRN-VDLMPPI 199 Query: 177 EEKL------GIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYR 229 E L ++V + N+ AL+E ++ +D + G+G+ V+N++++ Sbjct: 200 AEALAKAKLPELKVHLQNEADTAALSEYEFSDGDAKDSLIFVTCGVGVGAGIVLNDRLFT 259 Query: 230 GSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKL 289 G +G+IGH I+ DG +C CGR GC ET L Sbjct: 260 GVQGMAGEIGHNILQIDGPLCSCGRRGCAETFFGARTL---------------------- 297 Query: 290 TTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 + +P + + +G+ L N N + + + G SC + Sbjct: 298 --------AKLPDPT------QGGHYLGVVLQNLWTTFNPSTLVVGGPSCDTYPGIVKAA 343 Query: 350 IRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + + +G L + +LR Sbjct: 344 QDTLQRYADAAGMAAP----TVRPARYGLLASAVGAAALVLHHELR 385 >UniRef50_A0AF76 XylR protein n=1 Tax=Listeria welshimeri serovar 6b str. SLCC5334 RepID=A0AF76_LISW6 Length = 378 Score = 318 bits (815), Expect = 3e-85, Method: Composition-based stats. Identities = 70/397 (17%), Positives = 150/397 (37%), Gaps = 26/397 (6%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 N IR N+ ++L + ++ +++ L+ ++ +S+I+++L ++K + + Sbjct: 3 TNRTVIRESNERIVLNTIAQKGPHSRALLSDTIGLNKATISDIVKKLIAQKLINEVGIGE 62 Query: 65 QT--RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYL--QIDAPTPQA 120 T G + + +++ +++ I+ + + I T Sbjct: 63 STNLGGRKPIMLELNAKAGFSVSVDIGYNYIDVMAQRLDGTAYKRELFPFIVIKRETIIQ 122 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 +S+I + P + + +AIHG V + Q P ++ L E+ Sbjct: 123 EISDILDVFLSSLPKSPFGIVGILIAIHGVV--LDNQIQFTPAYD-LAGLDFSSALHEQF 179 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 V ++N+ +LA+++ + S + I++ GIGS ++N ++Y G +G+IGH Sbjct: 180 ACPVYLENEANLLAVSDHTKEES-YANLVSISIHSGIGSGVILNNELYTGINGYAGEIGH 238 Query: 241 TIVN-PDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 + +G C CG GCLE AS + + ++ L A+ Sbjct: 239 MQIVTENGRPCPCGASGCLECYASEKNILDTYQTRTGNKNALVT---------DLCRAFT 289 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 E + ++ + + N + N I++ ++ I Sbjct: 290 EKEEEAMAVINDMVRYLATGIQNLTALYNPEIIFINSEISRLIPDFTKQIE--------S 341 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 R + K I L + G GYL ++ L Sbjct: 342 RLTSFTSKNIAIKESHLGEEAILYGAGYLIIQRFLAS 378 >UniRef50_C9BHD6 Xylose operon repressor n=1 Tax=Enterococcus faecium 1,141,733 RepID=C9BHD6_ENTFC Length = 386 Score = 318 bits (815), Expect = 3e-85, Method: Composition-based stats. Identities = 69/394 (17%), Positives = 147/394 (37%), Gaps = 25/394 (6%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI--DDE 63 + IR N+ +L+ + +K ++ LA ++ +VS+I ++L ++ +V D Sbjct: 4 SKYTIRELNQATLLKTIIEKKEVFRAELAAATGLNKASVSDITKKLLDDQLIVETRVGDA 63 Query: 64 SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEF--EYLQIDAPTPQAL 121 S G P+ L ++ +E ++ + + IDA Sbjct: 64 STAGGRKPIMLTFNPQSATALSFDIGYNYLEGMLSYIDGTVLSSISKRRISIDATNVFDH 123 Query: 122 LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + E R P + + + IHG V P ++++ L + Sbjct: 124 IQESIHQLIRDLPETPHGIVGMTIGIHGVVFED--HPIFTPYYD-LHKIDLQKELADHYD 180 Query: 182 IRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 + + N+ + AL E +S ++ I++ GIG V + ++ G +G++GH+ Sbjct: 181 FPIYLHNEANLAALGEYTF-SSHYQNLVSISIHSGIGCGIVASGKLQVGKHGKAGELGHS 239 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 I+ PDG C CG GCLE AS A+ ++ + + + L + G Sbjct: 240 ILYPDGRPCPCGNSGCLEQYASSKAVYEEFARLKG---------LDYVNSDILTDYVKKG 290 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 + T+ + ++A + + + N + + + + I + + + I Sbjct: 291 DTDATALLKKNAALLSIGINNIIMMYDPDVIVINSKLYEKNPQMIEQIHANLTSQ----- 345 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 K + +L + G + + L Sbjct: 346 ---FTKDILVRNTRLKGNAILYGALAVTAQHFLN 376 >UniRef50_C4RIY1 ROK-family transcriptional regulator n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RIY1_9ACTO Length = 423 Score = 318 bits (815), Expect = 3e-85, Method: Composition-based stats. Identities = 72/395 (18%), Positives = 142/395 (35%), Gaps = 11/395 (2%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N R +L+LL + ++ LA L+ ++ ++++++ L V+ + E Q Sbjct: 23 RNDDGRVTTAGRMLDLLRTRSTLSRVELAELSGLTQATITHVVRRLIDGGLVLEVGREQQ 82 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEI 125 RG + + + + + V T+ V + + P A +S + Sbjct: 83 GRGQPRRLLELNADAWYAVGVQVDRTTTTIVVIDFAGRRVATAGFRGTGTSGPDAAVSAL 142 Query: 126 EKCWHRHR---KLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 + + I + L HG D G+ P + L +LG+ Sbjct: 143 ADHIDDLLHSTAVPRERVIGVGLVTHGPQDRERGMLLMAHPTPDWLQYPLTSTLSNRLGL 202 Query: 183 RVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 V+++ND A E+W F +I + G+G V N YRG + +IGH Sbjct: 203 PVLLENDATAAATGEQWSGTVPTDTFGLIYLGSGLGGGIVANGNAYRGRASNAVEIGHVG 262 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARV---WLKSQPVSTQLDPEKLTTAQLIAAWQ 299 + C CG GC E A + Q + + ++ AWQ Sbjct: 263 LMGASAPCVCGNCGCAEAEAGPHTVVAQVLAHPDLAGRLGIKAHEEDTLADFERVARAWQ 322 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGR-SCAFGENWLNTIIRQTGFNPF 358 + +P T+ + RSA IG + +N+ +++ + L G + G + + + + + Sbjct: 323 ADDPDATAILQRSARWIGRAAVTMVNLFDLDTVVLAGPALISAGPLYQHFVEAELTRHAL 382 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 R ++ +G + + Sbjct: 383 SRALSRP----RVLLSANVDTAAAIGGALHVLRSI 413 >UniRef50_O82844 Xylose repressor n=2 Tax=Enterococcaceae RepID=O82844_TETHA Length = 386 Score = 317 bits (814), Expect = 4e-85, Method: Composition-based stats. Identities = 70/383 (18%), Positives = 145/383 (37%), Gaps = 26/383 (6%) Query: 17 VILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVN--IDDESQTRGHSSGTW 74 +IL+ + + +++ L ++ ++ +VS+I + L + + + + + + G Sbjct: 13 LILKNIIDYQEISRAKLTKITNLTKSSVSDITKTLLDKDIIYESKVGNSTNSGGRRPIYL 72 Query: 75 LIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEY--LQIDAPTPQALLSEIEKCWHRH 132 + + + I+ ++ S E Y + I+ LS+I + Sbjct: 73 KFNENSALVIGIEIGRNYIKGGLSYINGSLIREKSYTQITINRYNIIDTLSQIIQQLCSD 132 Query: 133 RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVM 192 I + +AIHG + +P + +E++ L + V + N+ Sbjct: 133 LPKSSYGIIGVGVAIHGSI--YKNKITFVPYSD-MDEIELQEKLSSHTHLPVFLINEANA 189 Query: 193 LALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDC 252 AL E S I++ GIG+ + +Y G +G+IGHT + PDG +C C Sbjct: 190 SALGEYTF-TSNSESLISISIQDGIGAGIIEKGILYSGKNGNAGEIGHTTLYPDGRLCPC 248 Query: 253 GRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRS 312 G +GCLE AS + L K+ S + E Q+I W + + + + Sbjct: 249 GNHGCLEQYASTTILYKEI---------SKLKEVEYCDLHQVINYWH-NDEEVIQLLKNN 298 Query: 313 ANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIG 372 A I + + N +++ + + + + +N I + + + I Sbjct: 299 AKLISIGVNNIVSMYDPETVVINNELYREIPDLINVIEKHLTRR--------NNRNVFIK 350 Query: 373 FGQLSRAQQVLGIGYLYVEAQLR 395 L + G L + L+ Sbjct: 351 NTSLEDKTTLYGCLSLVIRQFLK 373 >UniRef50_C5C348 ROK family protein n=1 Tax=Beutenbergia cavernae DSM 12333 RepID=C5C348_BEUC1 Length = 410 Score = 317 bits (814), Expect = 4e-85, Method: Composition-based stats. Identities = 65/385 (16%), Positives = 144/385 (37%), Gaps = 20/385 (5%) Query: 16 CVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQT--RGHSSGT 73 + ++ ++S L L ++ V + ++L+ + VV + G + Sbjct: 11 ARVFGEIWHHGPLSRSELVALTGLTKSTVFQLTEDLQRDGLVVETGLRTSGSQGGRRATL 70 Query: 74 WLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHR 133 P+ + +++ T + + + P ++ + + Sbjct: 71 LQANPDAVRVVGVHLGGTRTSVAITDTFGRVLDARSRPTVRRR-PDESVARVAEMIGELS 129 Query: 134 KLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVML 193 + +A+ G +D TG+ P W V V L+ E + + N + Sbjct: 130 AEHGAP-SAVGVAVPGLIDRDTGLCLVAPNLGWRD-VPVATLIGEAVQAPTIALNTVQAM 187 Query: 194 ALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV----NPDGV 248 A+AE Q ER ++ V G+G++ + + + RG+ +G++GH V +P+ V Sbjct: 188 AVAEMAQLRPDERMTLAMLYVGTGVGTALITDGNLLRGARGLAGELGHLQVRDPGDPEAV 247 Query: 249 VCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSW 308 C CGR GCLE++ A+ ++A + +LT + G+ S Sbjct: 248 KCACGRVGCLESLVGADAIVRRATQRGIAAA------GRRLTPELVGELASDGDAAARSL 301 Query: 309 VDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKA 368 + A +G + + + N + + + G + G+ L+ + R + ++ Sbjct: 302 IQDIAVEMGEAAAALVQLTNPDTVVVAGSVASMGDMLLDPLRETVVR----RTQPELRES 357 Query: 369 TQIGFGQLSRAQQVLGIGYLYVEAQ 393 + L ++ G L ++A Sbjct: 358 LDVRRSLLDNQGKLRGAITLALQAL 382 >UniRef50_C7Q6P6 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q6P6_CATAD Length = 429 Score = 317 bits (813), Expect = 6e-85, Method: Composition-based stats. Identities = 83/404 (20%), Positives = 147/404 (36%), Gaps = 41/404 (10%) Query: 7 NQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI------ 60 +R + +L++L ++ L RL +S VS ++ +L S VV Sbjct: 15 PPNLREEGRLRVLQVLLASTTTSRPELVRLTGLSRATVSVLVADLISAGLVVEENGANGS 74 Query: 61 ----------------DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSP 104 + ES++ G + + + + ++ + + + +P Sbjct: 75 GGSSGSSGSGGSSGTPEAESRSMGRPALPLALNRSVAYAIGADIGHAHVRVALCDLHGTP 134 Query: 105 KGEFEYLQIDAPTPQALLSEIEKCWHRHR---KLWPDHTINLALAIHGQVDPVTGVSQTM 161 E + P L R + + + L + I VD G Sbjct: 135 VWETSRAKEVDRAPHETLDLAADLVRRALTENGVSGERVLGLGVGIAAPVDAD-GALSAE 193 Query: 162 PQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSS 220 P T + LE + G+ + ND ALAE ++ D I + GIG+ Sbjct: 194 GIMPGWTGIRPGPELERRTGLATELTNDANAGALAEHMYGAGRDIEDMVYIRLSAGIGAG 253 Query: 221 FVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPV 280 + ++ RG+ +G+IGH DG+VC CG GCLET+AS A+ + + Sbjct: 254 VIAAGRLQRGAGGLAGEIGHLPAVRDGLVCRCGNRGCLETIASPVAVARLLQDSWG---- 309 Query: 281 STQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCA 340 E + L A +G P V+ + A+G +L + +LN I + G A Sbjct: 310 ------EPVAPGDLPALLAAGTPGTARVVEDTGEAVGRALAGLVTLLNPRLIVVGGDLAA 363 Query: 341 FGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLG 384 GE + R + + + G+L + +V G Sbjct: 364 IGEPLFEPLRRGIARYAL----PSAARQVAVVAGRLGSSAEVRG 403 >UniRef50_A4AFQ9 Putative ROK-family transcriptional regulator n=1 Tax=marine actinobacterium PHSC20C1 RepID=A4AFQ9_9ACTN Length = 405 Score = 316 bits (812), Expect = 7e-85, Method: Composition-based stats. Identities = 74/398 (18%), Positives = 149/398 (37%), Gaps = 20/398 (5%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 A +R N+ L + +++ +AR + +S+ +V+N++ EL SE V+ Sbjct: 11 APATVSDVRQRNRSQALRSVILTGETSRAAIARESGLSVASVTNLISELISEGLVMEAGS 70 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 + + G P G + L +V + ++ + ++ + +A+ Sbjct: 71 VASSGGRPVTLLAPNPSGAYFLGADVGERGVAVELFDLSMTRIDREFRGGREGEPIEAIA 130 Query: 123 SEIEKCWHRHRKLWP---DHTINLALAIHGQV--DPVTGVSQTMPQAPWTTPVEVKYLLE 177 +++++ + R+ P D I + L + G V D W +P+ V L+ Sbjct: 131 ADLDEALNALRERNPAAWDRMIGIGLGLPGIVESDAEGRQVLYAQSLGW-SPIPVADLVS 189 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSG 236 I V +N A+AE W ++ + V+ + G+G + V N ++ RG +G Sbjct: 190 H--DIPVFAENGAKTQAMAELWDGAARGVNEALVVLLGRGVGLAIVSNGELARGLNSSAG 247 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 + GH + +G +C CG GC+E A+ + R S + Sbjct: 248 EWGHVKIVRNGRLCRCGGRGCVEAYLGADAILELWREAGGVFDGSGWG--------AVGQ 299 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 +S +P VD +G +L +N+ N ++ + G G + + + Sbjct: 300 LLESHDPVAVGVVDELIETLGSALGGLVNLTNPERVIIGGWV---GLRLMEALASRMEEA 356 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + LG + +EA L Sbjct: 357 TRAEALARPGGQFSLHACSFGGDTVALGAAIMPLEALL 394 >UniRef50_A8S1Z3 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8S1Z3_9CLOT Length = 388 Score = 316 bits (812), Expect = 7e-85, Method: Composition-based stats. Identities = 65/396 (16%), Positives = 156/396 (39%), Gaps = 20/396 (5%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ N ++ N+ V+ E ++ K + +A + +S P V++++QE+ ++ VV Sbjct: 1 MK-GNNLSDVKKANRQVVYECIWSHKAVTMTDIAYMTHLSRPTVTSLVQEMTADNLVVKS 59 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 + G + + + + +++ + ++N + Sbjct: 60 GYGTSNGGRNPVLYHANAGAAYAMGIDLEFPKVRMAISNLECENICFSVRVYPRDSDKDQ 119 Query: 121 LLSEIEKCWHRH---RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 ++ +++ + + + + I G +D S + V + +++ Sbjct: 120 MIRLLKQQMDDLIQDSGIDRSRLLGVGMGIPGVIDYKQNHSVLFERIEGWENVPIGDIIQ 179 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 +G V + ND +L+ AE+ + ++ ++ I + GIG + + + +G + SG Sbjct: 180 RYVGKPVYICNDVNLLSWAERKAAHLEDVQNMLYIVIRSGIGMAIWTDGSLMQGEMGNSG 239 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 +IGH V+ +G+ C CG GCL S A+ + + L+ Sbjct: 240 RIGHMTVDKNGLECKCGSRGCLGLYTSEKAMMRIYSELTGKEIKQAG---------DLVP 290 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 +SG+ + +G+ + N N+ +I+++ A + ++ I+R + Sbjct: 291 LAESGDKAALQVFETCGRYLGIGIVNVANLFDISEVV----VSASFD--VSYILRNAQYA 344 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEA 392 R + +I G L+ + LG L ++ Sbjct: 345 LDVRKMNTIRREVKIREGLLAESGFGLGGCLLVLDK 380 >UniRef50_C5C1Z1 ROK family protein n=2 Tax=Actinomycetales RepID=C5C1Z1_BEUC1 Length = 403 Score = 316 bits (812), Expect = 8e-85, Method: Composition-based stats. Identities = 81/383 (21%), Positives = 150/383 (39%), Gaps = 20/383 (5%) Query: 18 ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIA 77 +L+LL + ++ L S ++ + L + V ++ + T G + Sbjct: 26 LLQLLRDGRARTRADLVAETGQSRSTIATRVDALLATGLVASVGSRASTGGRPPTAFAFD 85 Query: 78 PEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKC---WHRHRK 134 P L +++ V + S E + P+ +L + + Sbjct: 86 PTSRVVLGVDLGAAHGRLAVTDLAGSILAEHAEPVRISDAPEKVLGWVARTGHELLDRAG 145 Query: 135 LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLA 194 L L + G V+ TG P P V+V +L ++VDND ++A Sbjct: 146 RPSTDLAGLGLGLPGPVEHSTGRPVDPPIMPGWHGVDVPGILGAHFAAPILVDNDVNLMA 205 Query: 195 LAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDG--VVCDC 252 L E D + V GIG+ + + ++ RG+ +G +GH V P G +C C Sbjct: 206 LGEHAMGFPDVDDLLFVKVATGIGAGIIADGELRRGAQGAAGDLGHMAV-PGGEPRLCTC 264 Query: 253 GRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRS 312 G GC+E +AS +A+ + R + T+ ++A ++G+P T+ + ++ Sbjct: 265 GNTGCVEALASGNAIATKLREAG----------IDATTSDDVVALVRAGDPTATATLRQA 314 Query: 313 ANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIG 372 +G L +++LN + + + G A GE L I + R + + QI Sbjct: 315 GRELGAVLAGTVSLLNPSVVVIGGSLSAAGEQLLAGIREVV----YARSLPLATQHLQIV 370 Query: 373 FGQLSRAQQVLGIGYLYVEAQLR 395 + +R VLG L + L Sbjct: 371 GTRTARQAAVLGASVLASDFALS 393 >UniRef50_C9A2C4 Putative uncharacterized protein n=1 Tax=Enterococcus gallinarum EG2 RepID=C9A2C4_ENTGA Length = 388 Score = 315 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 66/389 (16%), Positives = 144/389 (37%), Gaps = 25/389 (6%) Query: 11 RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQT--RG 68 R N+ + LEL+ +++ L+ + ++ S I+++L ++ V+ I + G Sbjct: 13 RTKNESLCLELIMNNHNLSRADLSTMTGLTKATTSAIVKKLIEDQLVIEIGTGESSNVGG 72 Query: 69 HSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEY--LQIDAPTPQALLSEIE 126 + ++ +++ I +A + + +D T + +E+ Sbjct: 73 RKPIILQYNGKSGLSISIDIGYNYINGLLAFLDGEEVQSIQKKPIHLDEHTIKDHFTELF 132 Query: 127 KCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMV 186 + + I + +A+HG V G P + + + EE + V + Sbjct: 133 NHFKKSLPETYYGIIGVVIAVHGPV--HEGNVIFTPH-HELAQIPFRDIAEELVDYPVYL 189 Query: 187 DNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPD 246 +N+ + AL E +S+ IN+ GIG+ V N + G+ +G+IGH IV D Sbjct: 190 ENEANLSALGEYTF-SSKSSSLICINMHSGIGAGIVQNGILQTGTNGLAGEIGHQIVVLD 248 Query: 247 GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWIT 306 G+ C CG +GCLE A+ ++ + + + L +Q+ +P Sbjct: 249 GIECPCGNHGCLEMYAANKVCFEKF---------ANIKSMDYVNAIILREYYQNNDPDAI 299 Query: 307 SWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSV 366 + + + + + N + + I L + + + + Sbjct: 300 HVTEENVHYLSAGINNLVVHYDPEVIILNSSLYHEIPDMIGQLTKSLHSR--------FS 351 Query: 367 KATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + + L +LG ++ L Sbjct: 352 EKVIVRSSLLDEKATLLGGLVFNLQRFLN 380 >UniRef50_C5EN99 Predicted protein n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EN99_9FIRM Length = 450 Score = 315 bits (808), Expect = 2e-84, Method: Composition-based stats. Identities = 78/403 (19%), Positives = 154/403 (38%), Gaps = 19/403 (4%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 IN + ++ N+ IL+LL ++ +A ++ V+ I +L S +V + Sbjct: 53 TGINLENVKVSNRSAILKLLNDHGAMSRKDIALELGLTPATVTLICTQLLSAGILVEKGE 112 Query: 63 --ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 E + G + I + + L +++ +++ + A PQ Sbjct: 113 MEEEKRAGRKKVSIDINYQYKYVLSVSIEAPETCISISDLKGRLIAGRKLKTDGALEPQV 172 Query: 121 LLSEIEK---CWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 L ++ + + + + +++ G V TGVS + W V V ++ Sbjct: 173 FLKQVADEGKSLMWEQGISKESVLGAGISLPGPVKRDTGVSLHAYRI-WNEAVPVGEYMK 231 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 L + V+V+N+ A E + + + I G+GS+ +I +IY + Sbjct: 232 MYLDLPVVVENNVKAFAEGELIYGTGKNQENLLFIKWGPGVGSAIIIQNKIYDSQNSKTA 291 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQAR-----VWLKSQPVSTQLDPEKLTT 291 +IGH IV P G+ C CGR GCLET + A+ ++ R + D EK+ Sbjct: 292 EIGHYIVEPGGLPCRCGRRGCLETHVATHAMAERVRRACTKESMPGLYAFVDGDVEKIEV 351 Query: 292 AQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIR 351 + + +P + +D + ++ N + +L +++ +YG ++ I + Sbjct: 352 RNMEQWIEIEDPGLQKIIDDIVERLARTVVNTITLLAPDKVIIYGFMFE-----MDHIQK 406 Query: 352 QTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 F F I LS +G + V Sbjct: 407 --RFLDFCTYYDSLYDGDYILKSGLSDRIGYIGPLAIVVNEMF 447 >UniRef50_Q2RK90 Glucokinase n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RK90_MOOTA Length = 315 Score = 314 bits (806), Expect = 3e-84, Method: Composition-based stats. Identities = 71/314 (22%), Positives = 129/314 (41%), Gaps = 9/314 (2%) Query: 82 WTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRK---LWPD 138 L +++ TSI+ + + + + A+L I+ L Sbjct: 2 CLLGIDLGGTSIKAGLVDINGKILKKGQVPTGAGEGTTAVLKRIKNLARDLAGEQGLALG 61 Query: 139 HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEK 198 + + I G VD G+ P W ++ L L + V ++ND + AL E Sbjct: 62 ELEGIGIGIPGSVDVARGLVHLAPNLFWRD-FSLRDELAALLDLPVAIENDAHVAALGEM 120 Query: 199 WQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGC 257 WQ + ++ + GIGS +I+ +++ G ++GH + DG C CG +GC Sbjct: 121 WQGAGRGYTSLLMVTIGTGIGSGLIIDGRVHHGLFGYGAEMGHIKMVCDGRQCHCGGHGC 180 Query: 258 LETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIG 317 LET+AS +A+ K R +L + S D +L +++AA G+ +D +A +G Sbjct: 181 LETLASATAMVKSFREYLAAGYPSMLSDRPELGAKEILAAAAGGDELAGRVIDEAACYLG 240 Query: 318 LSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLS 377 +L N + ++ I + G GE L+ I + +K + L Sbjct: 241 TALANAVLLVGPEAIIIGGGPAQAGEVILDPIRKHLAAA----MGTWQLKQVPVLQAALG 296 Query: 378 RAQQVLGIGYLYVE 391 ++G YL ++ Sbjct: 297 NDAGIIGAAYLAMK 310 >UniRef50_B5XVY7 ROK family protein n=6 Tax=Proteobacteria RepID=B5XVY7_KLEP3 Length = 402 Score = 314 bits (805), Expect = 5e-84, Method: Composition-based stats. Identities = 74/401 (18%), Positives = 151/401 (37%), Gaps = 25/401 (6%) Query: 1 MRA-CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVN 59 M+ N + R HN+ VI+E + ++ LARL ++ VSNI+ E+E + + Sbjct: 1 MKTSGTNLEHARVHNRRVIIEAVRLHGELTRAELARLTALTPQTVSNIVAEMEQMDLLTS 60 Query: 60 I-DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP 118 + RG + + P W++ +++ ++ + + + + P P Sbjct: 61 HQPRRASGRGQPAVPVSLNPASAWSIGIHLDHQTLIVVLVDLAGEVHFR-RLILVQKPQP 119 Query: 119 QALLSEIEKCWHRHRKLWP---DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 A + + + R L + + + + G S V+V Sbjct: 120 GATFARLAEVLDEIRALPTLDWSRVLGMGVVMPGPFGVEGISSTGPTTLNGWEGVDVAAE 179 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYG 234 L G+ V ++ND + A+ E++ +++ F + + G+G+ + +Y G + Sbjct: 180 LGRLSGLPVTLENDATVAAIGERFHGVARQLNSFVYLYIGTGLGAGIFTDGHVYTGHAHN 239 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQL 294 +G++GH +V P+G C CG GCLE SL A + D + A Sbjct: 240 AGEVGHIVVAPNGRPCYCGNEGCLERYVSLQA---AYEFCGLDPYRALPEDLLSVDAALF 296 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTG 354 + WITS + + ++ + + + + G A L ++ + Sbjct: 297 -------DQWITSILA----PLRQAINLLECVFDAETVVVGGMMPA---PLLEKVLARL- 341 Query: 355 FNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + G + A ++ G LG L + + Sbjct: 342 PPLYQSVRGRYLPAQRVKMGMTGTDTAALGAAALPIFDEFN 382 >UniRef50_D1BAZ9 Transcriptional regulator/sugar kinase n=2 Tax=Micrococcineae RepID=D1BAZ9_SANKS Length = 420 Score = 313 bits (804), Expect = 6e-84, Method: Composition-based stats. Identities = 76/397 (19%), Positives = 139/397 (35%), Gaps = 21/397 (5%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M + +R N+ +I++ + + + L +S +S I++EL V Sbjct: 1 MAISGSQSSLREANRALIVDTIKKFGGLTQVELVAATGLSPATISTIVKELLGGGIV--D 58 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 + G + +A + ++ + + + E Sbjct: 59 TQSTTRSGRRAQMVTLARRVGLVAGVQFGHRHLKVALGDFGRTVVAEQTMPLPVDHRSDT 118 Query: 121 LLSEIEKCWHRHR---KLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 L D + + L + VD TG ++ +L Sbjct: 119 GLDRAALLVVELLERVGAPIDELLTIGLTVPAPVDVSTGEISVHGIMRGWDGQQLGQVLS 178 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 E+L V+VDND ALAE + +D + + Y G+ ++ ++RG +G Sbjct: 179 ERLARPVVVDNDANAAALAEHELGAGRGYQDVVFVRMSYSTGAGIMLGGHLHRGFAGTAG 238 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 +IGH V+P G +C CG GCL+TV S +AL R LT L++ Sbjct: 239 EIGHVQVDPRGDICRCGNRGCLDTVVSSTALLDLLR-----------GSHGDLTLRDLVS 287 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 +G+ + + IG + LN + + G A GE + + + + Sbjct: 288 RALAGDLGCRRVLADAGERIGGVVATLAGTLNPQLVVVGGELAAAGEVIVEPLRQAVLRH 347 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 P ++ G+L +V G L + A Sbjct: 348 VAPNTVAP----LEVVPGELGEQAEVTGALLLALRAT 380 >UniRef50_Q9KCZ4 Glucokinase n=101 Tax=Bacillales RepID=GLK_BACHD Length = 330 Score = 313 bits (802), Expect = 9e-84, Method: Composition-based stats. Identities = 75/321 (23%), Positives = 124/321 (38%), Gaps = 14/321 (4%) Query: 81 DWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRK---LWP 137 W + ++V T+I+ ++E + + I + Sbjct: 4 RWYVGVDVGGTTIKMAFLTTAGEIVDKWEIPTNKQDGGALITTNIADALDKRLSGHHKSK 63 Query: 138 DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAE 197 I + L G ++ TG W +K LEE+ + V+VDND + AL E Sbjct: 64 SDLIGIGLGAPGFIEMDTGFIYHAVNIGWRD-FPLKDKLEEETKLPVIVDNDANIAALGE 122 Query: 198 KWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDG-VVCDCGRY 255 W+ ++ +I + G+G V N I G +G+IGH V P+G C+CG+ Sbjct: 123 MWKGAGDGAKNMLLITLGTGVGGGIVANGNILHGVNGMAGEIGHITVIPEGGAPCNCGKT 182 Query: 256 GCLETVASLSALKKQARVWLKSQPVSTQLDPEK----LTTAQLIAAWQSGEPWITSWVDR 311 GCLETVAS + + + A + S LT + +A + + + S VD Sbjct: 183 GCLETVASATGIARIATEGVTEHKESQLALDYDKHGVLTAKDVFSAADASDAFALSVVDH 242 Query: 312 SANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQI 371 A +G ++ N N LN +I + G G+ L I + R + Sbjct: 243 IAYYLGFAIANLANALNPEKIVIGGGVSKAGDTLLKPIKQHFEAYALPRV----ADGAEF 298 Query: 372 GFGQLSRAQQVLGIGYLYVEA 392 L V+G G+L + Sbjct: 299 RIATLGNDAGVIGGGWLVKQQ 319 >UniRef50_C6J3G4 Transcriptional repressor n=1 Tax=Paenibacillus sp. oral taxon 786 str. D14 RepID=C6J3G4_9BACL Length = 304 Score = 313 bits (802), Expect = 1e-83, Method: Composition-based stats. Identities = 55/312 (17%), Positives = 117/312 (37%), Gaps = 18/312 (5%) Query: 82 WTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHR---KLWPD 138 + + +++ T + + + P+ ++ + + Sbjct: 3 YAIGIDIGGTKTAIGLIGTDGEVRTKVSLPTDQTVGPEVMVDRMAAAIQDILTAQGIAES 62 Query: 139 HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEK 198 + + + G ++ G P + L+ + + ++ND ALAEK Sbjct: 63 ELLGIGVGAPGPLNTKEGKIAEPPNLRGWWNFPIVDSLKRYFSLPIRLENDATAAALAEK 122 Query: 199 WQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGC 257 W +++ F I + GIG+ + ++ G+ +G +GH +V+P C CG+ GC Sbjct: 123 WLGAAKDAEHFVFITISTGIGAGIYSHGKLITGASGNAGDVGHIVVDPSVGTCVCGQKGC 182 Query: 258 LETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIG 317 E VAS +A+ +QA L ++++ + +G+P I V + IG Sbjct: 183 WEFVASGTAVARQASELLGR----------EVSSKEAFDLAAAGQPVIQELVAKVFENIG 232 Query: 318 LSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLS 377 + +N + ++ + G G+ N + + PS + T I L Sbjct: 233 VGCVTLINTFDPEKLVIGGGVSQVGDPLFNAVRDYVSKYALN----PSGRQTPIVPAALH 288 Query: 378 RAQQVLGIGYLY 389 + ++G L Sbjct: 289 QDAGLIGAAALI 300 >UniRef50_B5GCP5 Transcriptional regulator n=2 Tax=Streptomyces RepID=B5GCP5_9ACTO Length = 403 Score = 312 bits (801), Expect = 1e-83, Method: Composition-based stats. Identities = 80/402 (19%), Positives = 141/402 (35%), Gaps = 27/402 (6%) Query: 1 MRACINNQQIRHHNKCVILELLYRQK-RANKSTLARLAQISIPAVSNILQELESEKRVVN 59 +R N ++ N+ V+L+ + R K ++ LA +S VSNI + L + Sbjct: 13 IRRGTNLPRMGDFNESVVLDAIRRHKAGLSRVELAEATGLSAQTVSNITRRLLDQGVARE 72 Query: 60 IDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ 119 +S G + P + + +++ P I + + + + Sbjct: 73 SGKQSTGSGKPRTLLQVTPGARYAIGVHLDPAVITYVLLDLLGTVVARRSEPTPRGVHTE 132 Query: 120 ALLSEIEK---CWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 ALL+ + + + + L +A G VDPV G+ P+ P ++ L Sbjct: 133 ALLAGMAASVGALIEDSGVDQERVLGLGIAAPGPVDPVAGLVIDPPELPGWGSFPLRERL 192 Query: 177 EEKLGIRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 E G ++D D V A+AE+W + R+F + G G V+++ + RGS Sbjct: 193 EADTGFPALLDKDVVAAAVAERWSGAATDSRNFLFFYLGTGSGMGLVVDDTVLRGSSGNV 252 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKL--TTAQ 293 G++G G L S AL ++A T DP+ + Sbjct: 253 GEVG----------------G-LGAACSSRALVEEAIELGALGHEFTPTDPQDAQRSLQH 295 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT 353 L GEP +DR IG + +L+ + I G L +I Sbjct: 296 LARIAADGEPRAAGIIDRWGVRIGRGVTAAATLLDSDTIVFGGPLWPLLAPRLLPLIEPM 355 Query: 354 GFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 V T + + +G L ++ L Sbjct: 356 VAES---PFVKPVHGTTVTTTAIGEDVAAVGAACLVLDRTLS 394 >UniRef50_C6WCK9 ROK family protein n=6 Tax=Actinomycetales RepID=C6WCK9_ACTMD Length = 435 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 79/411 (19%), Positives = 144/411 (35%), Gaps = 22/411 (5%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + +R HN+ +L LY + ++ L +S VS L E+ VV Sbjct: 14 KRATVRDLRRHNRSALLSTLYFEGPLSRQELVARTGLSAATVSTATAGLVDERLVVGAGT 73 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKG--EFEYLQIDAPTPQA 120 G + P + ++V T + ++ + L + + D A Sbjct: 74 VESDGGRPRSLLRVNPGYGHVVGVDVGETGVAVELFDLALRRIAALDHDLPPTDPLAVGA 133 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTG-----VSQTMPQAPWTTPVEVKYL 175 L++ + + + + G+V+ G W + V + L Sbjct: 134 LIAAAVPEVIALAGADQGSVLGVGIGVPGEVERRGGAWGAATLVHAQTLGW-SGVPLAEL 192 Query: 176 LEE-KLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLY 233 + + + V+N AE W + R V + G+G++ V + + RGS Sbjct: 193 VRAGGTTLPLFVENGAKTQGQAEMWFGAGRGSRHVVVALLASGVGAAVVADGAVQRGSTS 252 Query: 234 GSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWL-------KSQPVSTQLDP 286 +G+ GHT V G C CG +GCLE A+ ++ R + + + Sbjct: 253 SAGEWGHTTVVHGGRRCRCGAHGCLEAYVGAGAVLERYRGLGGELGEGDERAAFAELVAL 312 Query: 287 EKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGR-SCAFGENW 345 T + G T ++ + +G + +N+ N I L G A GE W Sbjct: 313 AGGGTLGGGSPPAGGAQLATRVLEEAVGYLGAGIATLVNLFNPELIVLGGWAGAALGEGW 372 Query: 346 LNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 L +I+ T + ++ G+L +G L V A L + Sbjct: 373 LPSIVAATREHALRH----PFARVRLEAGRLGPDAVAVGAATLPVAALLER 419 >UniRef50_UPI0001C35AB4 xylose repressor protein n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C35AB4 Length = 401 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 80/398 (20%), Positives = 169/398 (42%), Gaps = 25/398 (6%) Query: 11 RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE---SQTR 67 + N+ ILE +YR ++ +A +I+ V+ + L SE V + + + Sbjct: 8 KASNRSRILECIYRNAPIARTDIAEETEITPATVTMNVTTLISEGFVRELGEVSTDEASS 67 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYL---QIDAPTPQALLSE 124 G I P+ +++ L T ++ + + + + ++ A++ Sbjct: 68 GRKRVLIDIIPDRAYSIGLEFTQKALVICITDLKGRIRFQRTEPFNEELAGRITDAIIGG 127 Query: 125 IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184 ++ + D + + A+ G ++ + K +E++L + + Sbjct: 128 VKDLVAE-SGISWDEIVGIGAAVPGHMNGSASSLI--TNRKTWQNFDPK-RIEQELPLPI 183 Query: 185 MVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV 243 + +N+ +AL E + + D F +V G+ + V++ +++ G Y +G+IGHTIV Sbjct: 184 VCENNARCMALGEYLFSPQESPDSFAFFHVGMGMFCASVVDGEMFLGENYVAGEIGHTIV 243 Query: 244 NPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQP----VSTQLDPEKLTTAQLIAAWQ 299 + G C+CG+YGCL+T AS + L + AR+ ++ P S D ++T + A+ Sbjct: 244 SEGGRRCECGKYGCLQTYASENHLIRNARLLYRNTPNTILRSLVSDDSQITIETITTAYS 303 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGEN---WLNTIIRQTGFN 356 G+P I ++ + +G+++ N I N +I+L+G+ + ++ I RQ F Sbjct: 304 MGDPVIGMYIAEALKYLGITISNIAIITNPGKIFLHGQLFDNQDIQNELMDYIERQLIF- 362 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + +I A +G L + Sbjct: 363 ----VDRTYAGNVEILP--YGAADGAVGASALAILRFF 394 >UniRef50_C7Q516 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q516_CATAD Length = 404 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 79/396 (19%), Positives = 153/396 (38%), Gaps = 14/396 (3%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 + +R ++ +L +Y + ++ LARLA +S AVSN++ +L S+ V Sbjct: 8 TTRDLRRRSRATLLSCIYLGRAVSRPELARLAGMSSAAVSNVVSDLISDGLVAEAGSVDS 67 Query: 66 TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKG----EFEYLQIDAPTPQAL 121 G P + + +++ T I + + LS E ++D L Sbjct: 68 NGGRPRTMLAARPGFGYAVGVDIGETHIHVVLFDWTLSTLATSTHEIRVGRLDPDVVVRL 127 Query: 122 LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + + + + + + + + G V P W + V + L +L Sbjct: 128 VVSGVRSLLDSTGVPHERLLGIGIGVPGAVQEGERGVVHAPTLGW-SGVPLGDALRAELD 186 Query: 182 IRVMVDNDCVMLALAEKWQNNSQERDFCVINV-DYGIGSSFVINEQIYRGSLYGSGQIGH 240 +++DN L AE W+ ++ V+ + G+G++ + + + GH Sbjct: 187 APILIDNCARTLGQAEAWRGAGRDARRAVVALWGVGVGAAIAEGSSLAESGSSSTSEWGH 246 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 ++ G C CG +GCLE +A+ +P ++ D + A+L A + Sbjct: 247 AVIEARGRACRCGSHGCLEAYVGATAILDAYLAHPAGKPFTS--DGTEAKMAELAARATT 304 Query: 301 G-EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCA-FGENWLNTIIRQTGFNPF 358 G + T+ D +A +G+ + N +N++N +Q+ L G G + I + Sbjct: 305 GADEAATATFDEAAEYLGIGVGNLINMINPDQVILAGWVGEQLGPLLMPAIREAARRHAL 364 Query: 359 DRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 T+I G+L LG L V L Sbjct: 365 ----PYLFDQTRIDVGELGPGAVALGAATLPVARLL 396 >UniRef50_A9WL96 Transcriptional regulator/sugar kinase n=13 Tax=Actinobacteria (class) RepID=A9WL96_RENSM Length = 416 Score = 312 bits (800), Expect = 2e-83, Method: Composition-based stats. Identities = 68/382 (17%), Positives = 140/382 (36%), Gaps = 18/382 (4%) Query: 18 ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIA 77 + ++ + ++ LA L ++ V+ L L + + + + G Sbjct: 38 LFQIFRDGQARTRAELAELTGLARSTVAARLDALTALGLIGPAGEAVSSGGRPPSRVAFN 97 Query: 78 PEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHR---K 134 P ++V T + + + GE + + P+ +L + + Sbjct: 98 PTARIVFAVDVGATHLLVALTDLGGRLLGERKVAADVSDGPEKVLDLVIRQCQELLAESG 157 Query: 135 LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLA 194 + + + G V+ +G + P P ++ ++ V+VDND ++A Sbjct: 158 RSAKELAGIGIGVPGPVEHSSGKPASPPIMPGWDRFDIPSYIQRVFDTDVLVDNDVNIMA 217 Query: 195 LAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNP-DGVVCDCG 253 L E+ + + +D I V GIGS + + RG+ +G +GH V +G++C CG Sbjct: 218 LGERAAHWREAQDLLFIKVATGIGSGIISGGLLQRGADGTAGDLGHVRVARGEGIICRCG 277 Query: 254 RYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSA 313 GCLE +AS A+ + +++A ++G ++ Sbjct: 278 NEGCLEAIASGPAIARALTESG----------VPANNGEEILALVRAGNVQAIQVFRQAG 327 Query: 314 NAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGF 373 +G L +++LN + + G A GE+ L + + R + I Sbjct: 328 RDVGDVLATCVSMLNPAVVVIGGSLSAAGEHLLAGVREVV----YARSLPLATSRLSIVQ 383 Query: 374 GQLSRAQQVLGIGYLYVEAQLR 395 + VLG + + L Sbjct: 384 SKAGAEAGVLGASRMVTDHVLS 405 >UniRef50_Q6A638 Transcriptional regulator, ROK family n=1 Tax=Propionibacterium acnes RepID=Q6A638_PROAC Length = 397 Score = 311 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 80/374 (21%), Positives = 140/374 (37%), Gaps = 17/374 (4%) Query: 16 CVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWL 75 ++++L + ++ +A + VS ++ L + V T G Sbjct: 28 QRVIKILRKTPGMTRAEIAESTSMPRSTVSAAVRHLLESRVVEEYACADSTGGRRPTKLR 87 Query: 76 IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKL 135 +AP + +A+ + P+ + + K WH+ Sbjct: 88 VAPAVGNAFVAELGQHHARLAIASREGELLATDDIKINIEIGPEKTIKALAKGWHKLGDE 147 Query: 136 WPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLAL 195 P ++ LA+ G VD +G + P + ++ +L ++L + +++ND + Sbjct: 148 IPGAVVSAGLAVPGPVDG-SGHVVGAARMPGWSGKDIAGMLAQELAVPSVIENDARAATI 206 Query: 196 AEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGV-VCDCGR 254 E + GIG+ +V YRGS +G I H V+ D C CG Sbjct: 207 GEWNCRGRHRDSCIYVKAGTGIGAGWVSGGVAYRGSRGLAGDITHLRVHTDNPLPCTCGN 266 Query: 255 YGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSAN 314 GCLETVAS +A+ +Q S TT+QL+ A SG+P S V + Sbjct: 267 SGCLETVASGAAILRQLGRLGSSIS----------TTSQLVTAENSGDPQAVSLVRDAGM 316 Query: 315 AIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFG 374 +G L N +N LN +I L G G L + + ++R + I Sbjct: 317 RLGEVLSNLVNFLNPVRIVLGGSMSQMGS-LLAGVRSEL----YERCLPMCTEDLVIETS 371 Query: 375 QLSRAQQVLGIGYL 388 ++G+ L Sbjct: 372 ACGADAPLIGMSIL 385 >UniRef50_Q9Z557 Putative ROK family transcriptional regulator n=2 Tax=Streptomyces RepID=Q9Z557_STRCO Length = 407 Score = 311 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 73/381 (19%), Positives = 141/381 (37%), Gaps = 17/381 (4%) Query: 16 CVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWL 75 LEL+ + +++ LA L + +VS + +L V +S T G Sbjct: 19 ARALELIASGRATSRAQLAELLGAAASSVSVAVAQLVEHGLVAEEGTQSSTGGRPRKVLR 78 Query: 76 IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKL 135 + + ++ + ++ + V + + A PQA LS + + Sbjct: 79 LGGQDEFAVAADLGGSHARVGVVLPGGELRDVSTVPLVIAEGPQAALSRLAATLEELVEQ 138 Query: 136 W-PDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLA 194 + L++ G VD TG + P V+ L E+ + + DND +A Sbjct: 139 HGRGRLRGVGLSLPGPVDTATGSVVQPSRMPGWNRFPVESWLRERFAVPAVADNDANCMA 198 Query: 195 LAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNP-DGVVCDCG 253 + E + + ++ IG++ +++ ++YRG +G+I H + D V C CG Sbjct: 199 VGEHIARKGRHQQVIMVKTGTAIGAAALVDGRLYRGGTGAAGEITHIRIARGDHVPCSCG 258 Query: 254 RYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSA 313 CLETVAS +AL + R + + ++ P V R+ Sbjct: 259 NTDCLETVASGAALVRVLRDEG----------VDVTSAEDVVRLATDAHPEANRAVRRAG 308 Query: 314 NAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGF 373 + +G L +N N + ++L G + + ++ + I Sbjct: 309 DYLGQVLAANVNFFNPDAVYLGGILST-----VEPFVAAVRSQLYESCHPLVTEHLAIER 363 Query: 374 GQLSRAQQVLGIGYLYVEAQL 394 L R ++G G ++ L Sbjct: 364 AVLGRDAGLVGAGLFALQRAL 384 >UniRef50_A5CYL2 Transcriptional regulator/sugar kinase n=4 Tax=Clostridia RepID=A5CYL2_PELTS Length = 337 Score = 311 bits (799), Expect = 2e-83, Method: Composition-based stats. Identities = 83/324 (25%), Positives = 143/324 (44%), Gaps = 14/324 (4%) Query: 79 EGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIE---KCWHRHRKL 135 + + +++ T I +A E + Q ++ I + + + Sbjct: 2 NSFYVIGVDLGGTKIYTALAADDGRVLSEIKLPTEAGRGLQGVIDRIVHSVEQVRENVAV 61 Query: 136 WPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLAL 195 P + LAL G +D GV P W V ++ +LEE+L + V++DND + AL Sbjct: 62 PPQKVLALALGAPGPLDTAGGVIHFAPNLRW-NNVPIRQILEERLSLPVLLDNDANLAAL 120 Query: 196 AEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGR 254 E + + I V G+G +++ ++YRGS G+G+IGH V PDG VC CG Sbjct: 121 GEHVFGAGRGCGNMVYITVSTGVGGGLILDGKLYRGSSDGAGEIGHMTVLPDGPVCSCGN 180 Query: 255 YGCLETVASLSALKKQARVWLKSQP-----VSTQLDPEKLTTAQLIAAWQSGEPWITSWV 309 GCLE +AS +A+ + A + S + DP ++ A + AA G+P + + Sbjct: 181 RGCLEAMASGTAIARAAAELVASGGGRKILAAAGGDPGRINAAAVAAAAAGGDPEAAAII 240 Query: 310 DRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKAT 369 DR+A +G+ + + LN+LN + L G GE + R+ R + Sbjct: 241 DRAAGYLGIGVASILNLLNPAMVVLGGGVMEIGEPVWKGVRREVQ----ARALQAARSRA 296 Query: 370 QIGFGQLSRAQQVLGIGYLYVEAQ 393 ++ +L V+G L ++ Sbjct: 297 RLVPAELGGRAGVMGAIALALQEI 320 >UniRef50_C1I2A3 Xylose repressor protein n=1 Tax=Clostridium sp. 7_2_43FAA RepID=C1I2A3_9CLOT Length = 397 Score = 311 bits (798), Expect = 3e-83, Method: Composition-based stats. Identities = 73/410 (17%), Positives = 173/410 (42%), Gaps = 27/410 (6%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ N Q++R IL+ +Y + ++ ++ I+ VS I + E + I Sbjct: 1 MKLTKNQQKLR----FKILDKIYAKGPISRIDISNETGITPATVSEITGNMIQENLIHEI 56 Query: 61 D---DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPT 117 E G I+P + + ++P I + + + + +Q+D Sbjct: 57 GEVIPEENKSGRKKILLGISPNHSFYIGTELSPKYISFCLTDNIGKI-YKEKTIQLDNSN 115 Query: 118 PQALLSE---IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKY 174 + +LSE I K + + +A+ G D V + ++ Sbjct: 116 LEEILSEEFYINKLSSFIDSCTNYNPKGIGIALPGHFDEVNKSII--TNNSFWKNFDI-T 172 Query: 175 LLEEKLGIRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLY 233 +L E+ + + +N+ + L+E+ + N + +F +V G+ S++ N ++Y + Sbjct: 173 ILLERFDLPIYFENNVKCMTLSERLFSFNGNDDNFIFFHVGRGMFCSYMYNGELYAKDNF 232 Query: 234 GSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQL----DPEKL 289 G+IGH +V+P+G +C+CG+ GCL+T S + + K++++ + + + K+ Sbjct: 233 LVGEIGHIVVHPNGELCECGKRGCLQTYGSEAWIIKKSQILFDNSETTYLKQLVSERNKI 292 Query: 290 TTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 T ++ A++ G+ I ++ + N + +++ N +++ ++I ++G + + Sbjct: 293 TIETILKAYRLGDEGIIKILNSAINYLSITINNLSMMIDSSKIIIHGEL------FNEDL 346 Query: 350 IRQTGFNPFDRDEGPSVKATQ--IGFGQLSRAQQVLGIGYLYVEAQLRQI 397 ++ ++ K + I + + L L V L ++ Sbjct: 347 LKNLLEELLKQNINLLSKNIKQDILLKEYNNYNGALAAAALCVSKLLIKL 396 >UniRef50_D1CDD5 ROK family protein n=1 Tax=Thermobaculum terrenum ATCC BAA-798 RepID=D1CDD5_THET1 Length = 321 Score = 311 bits (798), Expect = 3e-83, Method: Composition-based stats. Identities = 69/317 (21%), Positives = 128/317 (40%), Gaps = 10/317 (3%) Query: 81 DWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWPDHT 140 + + +++ + + +AN E+ + +L I +C P Sbjct: 4 RYVIGVDLGGSRVRAVLANEKGEFLDRCEFPTLADKGLYFVLERILECVRSVSSNAP-RI 62 Query: 141 INLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQ 200 + + G ++ GV P P V + L+EEK GI + ND + AL E Sbjct: 63 DAIGVGAPGPINSKEGVVSNPPNLPGWVNVPLAKLIEEKTGIPTFLGNDANLAALGEFTY 122 Query: 201 NNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLE 259 + + + I V G+G +I+ Q+ G +G++GH +V P G C CG YG LE Sbjct: 123 GSGKYVQHLIYITVSTGVGGGIIIDGQLLEGHNGAAGEVGHMVVQPGGPKCSCGGYGHLE 182 Query: 260 TVASLSALKKQARVWLKSQPVSTQLDP----EKLTTAQLIAAWQSGEPWITSWVDRSANA 315 ++S +A+ K+AR + ++ +K+ + A + G+P ++++ Sbjct: 183 ALSSGTAIAKRAREAASLNKDTIMIELAGSVDKINAKIVDEAAKKGDPLALKLLEQAGQW 242 Query: 316 IGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQ 375 +G +L N ++I N I + G GE L + F+ + QI Sbjct: 243 LGYALINLIHIFNPQMISIGGGVSEAGELLLGPARKVV----FEGLMPVFKQDLQIVKAS 298 Query: 376 LSRAQQVLGIGYLYVEA 392 L + G L ++ Sbjct: 299 LGGDVGLAGAVALALQE 315 >UniRef50_A9WJ57 ROK family protein n=2 Tax=Chloroflexus RepID=A9WJ57_CHLAA Length = 408 Score = 311 bits (797), Expect = 4e-83, Method: Composition-based stats. Identities = 90/394 (22%), Positives = 167/394 (42%), Gaps = 9/394 (2%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 Q R N ++L L+Y +++ LARL ++ VS+++ EL V+ Sbjct: 7 KATRQHTRDVNLRLVLRLIYELGAVSRADLARLTNLTRTTVSDVVGELIERGLVIETGLA 66 Query: 64 SQTR-GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 + G + +A ++V S+E + + + G I T L Sbjct: 67 TGGGIGRTPMLLSVAEWSRPVAAISVNADSVEGALVSLRGNV-GRRISRSIQGQTGADAL 125 Query: 123 SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 + +++ + + + + G ++ +G+ W + + LL E+ G+ Sbjct: 126 NTLQETLDELIQTANQPLLGIGVTTPGLINASSGMIVRAVGLEWAD-LPLGQLLHERYGL 184 Query: 183 RVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V V ND LALAE + + V+ + G+G+ V+N Q+Y G +G+G+IGH Sbjct: 185 PVKVVNDSQCLALAEHLFGEWRGVANLVVLKIGKGVGAGIVLNGQLYAGEGFGAGEIGHL 244 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLD-PEKLTTAQLIAAWQS 300 +G++C CG GCLETV AL QAR + + P S L+ ++ Sbjct: 245 AFTANGLLCKCGNRGCLETVLGSDALLHQARTAIAANPNSILAAYASDLSLGRIAEGAAM 304 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 G+P + +A A G ++ +++L++ + + GR AFGE + + R+ R Sbjct: 305 GDPVAQHVITTAAAATGAAVATIISLLSVRHVLITGRITAFGETFAELVRREVAQ----R 360 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 V+ T+I ++G + +L Sbjct: 361 ALPALVRDTEIRLAPAPTITPLIGAAAPVLTGEL 394 >UniRef50_C8ZX67 Xylose operon repressor n=4 Tax=Enterococcus RepID=C8ZX67_ENTGA Length = 388 Score = 310 bits (796), Expect = 6e-83, Method: Composition-based stats. Identities = 66/395 (16%), Positives = 143/395 (36%), Gaps = 25/395 (6%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 IN IR N+ +L+ + + +++ ++ L ++ +VS I+++L V + Sbjct: 3 INKMGIREQNEAAVLKTIIDNEHISRAEVSNLTNLNKASVSQIMKKLIETDFVKEVGIGD 62 Query: 65 QT--RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKG--EFEYLQIDAPTPQA 120 T G + + ++ + ++ E + + I Sbjct: 63 STSIGGRKPIQLQFNHQSSLAITFDIGYNYVNGMLSYINGQRIAILEKQDILITKDNVFT 122 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 + I + + + LAIHG V+ P +++ L +K Sbjct: 123 TIDSIMAEFTPKMPPTTHGLVGICLAIHGIVNQEN--ITFTPYYDLEH-IDLVSPLSQKY 179 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 V ++N+ + AL E +S + +++ GIG ++N ++ G+ +G++GH Sbjct: 180 HTAVYIENEANLTALGEYCF-SSDSTNLLSVSIHSGIGVGIIVNGRLQTGTHGTAGEVGH 238 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 + + P G +C CG GCLE AS L + K E + + A +S Sbjct: 239 STLFPHGNLCPCGNRGCLEQYASNKVLFDTYSHYTKK---------ELVNSDIFAKAIRS 289 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 GE ++ + + L N + + ++++ + ++ Sbjct: 290 GEKSALELAQQNVEFLSIGLNNVITFFDPEEVYINSSVYRKIPQLTKDLQQKLTSQ---- 345 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + T+I +L + G L + L Sbjct: 346 ----FTQNTKIKNSRLGEQAPLFGGNVLIAKNFLN 376 >UniRef50_Q185Y3 Putative regulator of a specific sugar metabolism n=6 Tax=Clostridium difficile RepID=Q185Y3_CLOD6 Length = 404 Score = 310 bits (795), Expect = 6e-83, Method: Composition-based stats. Identities = 72/398 (18%), Positives = 160/398 (40%), Gaps = 8/398 (2%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 + N + ++ NK +IL+LL ++ LA+ ++ +SN++ EL +E + I+ Sbjct: 5 KQGSNIKDVKIKNKLIILKLLSTNTPMSRVDLAKSTGLTKMTLSNLVTELINENMIREIE 64 Query: 62 DE---SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP 118 + + G I+ + + + +++ + + + Sbjct: 65 SSTLNAHSSGRKPILLDISNISPCICGILIRRNICKVIISDLKGNIVKQLSETYPKCLSN 124 Query: 119 QALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 L I++ + + K+ I + ++ G VD + G P + + + ++E Sbjct: 125 DVLKDIIKRMFTKIMKINKRDIIGIGISSIGPVDDINGTILNPPDFGNVSNLNIVDFIKE 184 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 + + + ND ALAEK + ++ +++ GIG+ V+ +++ G+L SG+ Sbjct: 185 MSDLPIFLINDANSGALAEKMYGLGKNISNYIYLHIMNGIGAGLVLENKLHTGNLGQSGE 244 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 IGHT +N G +C CG GCL+ S+S L K+ P S ++ + + +LI Sbjct: 245 IGHTSINFSGPLCSCGNNGCLDYYTSVSNLIKRIESLSHIYPNSPLINCKDFSLVKLIDE 304 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNP 357 + + +D + +L N L +++ + I + G NT++++ + Sbjct: 305 ANNKDSLAMFLLDEFCTYVSYALVNTLTLIDCSSIIIGYDFNIPGTFIENTLLKKLTASA 364 Query: 358 FDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 K + ++G + Sbjct: 365 ----SFSKYKKISVRHSNFGANAPLIGSIAIVSYNFFN 398 >UniRef50_D2QLA5 ROK family protein n=1 Tax=Spirosoma linguale DSM 74 RepID=D2QLA5_9SPHI Length = 410 Score = 310 bits (795), Expect = 7e-83, Method: Composition-based stats. Identities = 86/404 (21%), Positives = 166/404 (41%), Gaps = 15/404 (3%) Query: 3 ACINNQQI---RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVN 59 A I+ + ++ + +L LY + + L R+ S+P+V+++++EL + V Sbjct: 11 APISQSVVDYKKNQKQRKVLAHLYSEGTCTLAHLTRMLHSSVPSVTSLVEELIDNQWVTP 70 Query: 60 IDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ 119 I + + G + + + + L+V+ + N +Y P Sbjct: 71 IGTATGSNGRRPVLFGLNTKSHYVAVLDVSTHDTKILFMNVQRKVIFRGDYDLRLNDNPS 130 Query: 120 ALLSEI--EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 L S + ++ D I + +++ G VD G++ T T + L Sbjct: 131 FLTSLVHYFHNALADSEISIDDLIAVGISMPGLVDARRGLNLTYKNLH-QTGESLPQWLS 189 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 +L V + ND L E +Q + IN+D+G+G ++N ++++G+ +G Sbjct: 190 AELNKPVYLINDTKATVLGESRFGGAQGKKQVLAINIDWGVGLGIIVNGEVFQGASGFAG 249 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQL----DPEKLTTA 292 ++GH V+PDG +C CG+ GCL T+ S SAL K+A+ + + VS +++ Sbjct: 250 ELGHIQVDPDGELCFCGKIGCLSTITSASALVKRAQTDILAGQVSKLATFRDHVDQIDID 309 Query: 293 QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQ 352 ++I A SG+ + + + +G L +++ N I + G LNTI + Sbjct: 310 EVINAANSGDSYAIDILHETGYQLGKGLAIAISLFNPEIIVVDGVLFKAAAFILNTIEQA 369 Query: 353 TGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 I QL+ + LG +E Sbjct: 370 ISKYCLSD----FRNDMTIEVTQLNGTAKWLGTHAYMMEDIFAN 409 >UniRef50_B7GQ98 ROK family protein n=10 Tax=Bifidobacterium RepID=B7GQ98_BIFLI Length = 404 Score = 309 bits (794), Expect = 9e-83, Method: Composition-based stats. Identities = 56/357 (15%), Positives = 117/357 (32%), Gaps = 4/357 (1%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 + + N+ I++ LY ++++ +A+ +++ A++ I L + D Sbjct: 9 TSQASVSESNRSRIVKHLYHNGISSRAQIAKALELTPAAITKITARLIEAGMIEETGDLE 68 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 ++ S + + + + ++ V + C + + T + Sbjct: 69 GSKNRRSIGLKLDTTRFRIIGIKFARSLVQIGVFDLCGNTLSFENLPTVYDNTINDTIVT 128 Query: 125 IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRV 184 I + + P + + +A+ G G + + + + V Sbjct: 129 IHQRVEQLLDNDPS-IVAIGMAVPGPYLRNVGRTAVVSSMQGWRKINFIDEFATAFRVPV 187 Query: 185 MVDNDCVMLALAEKWQNNSQER--DFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 ++ D ALA + S + V G+G + N ++ G L + +IGH Sbjct: 188 FIEQDARAGALAHYLFDPSVHADGNLAYYLVGEGVGLGVIDNGRLINGFLGAATEIGHIS 247 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 ++ +G CDCG GCLE S A+ P + + A A G+ Sbjct: 248 IDVNGRPCDCGNVGCLERYCSTPAIHDMLIADGTVVPGAADMTNTAAARAL-FAKAGDGD 306 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 + V A +G N N I + G L+ + Sbjct: 307 EAAIAIVREVAQYVGYGCVTIFNGYNPEHIIIGDIVAEAGPILLDEVRATVAERAIP 363 >UniRef50_B0PDL5 Putative uncharacterized protein n=1 Tax=Anaerotruncus colihominis DSM 17241 RepID=B0PDL5_9FIRM Length = 380 Score = 309 bits (793), Expect = 1e-82, Method: Composition-based stats. Identities = 76/391 (19%), Positives = 161/391 (41%), Gaps = 27/391 (6%) Query: 16 CVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWL 75 +IL+++ + ++S +AR+ +S + + I+ LE V ++ S G + Sbjct: 2 KMILDIIRDSREVSRSEIARMTGMSPTSATRIVGSLEECGLVRDMAAVSNGVGRKAVMLD 61 Query: 76 IAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQI-DAPTPQALLSEIEKCWHRH-- 132 + + + L+++ T+++ + N D+ P+ ++ + + R Sbjct: 62 VEENAFYCIGLDISETNLKLCILNFGGQIVARGAAPAPGDSFQPEEVVEIFYRMYQRLAI 121 Query: 133 -RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCV 191 K+ + + G VD TG W+ V + ++E + G+ VDND Sbjct: 122 QAKIPMEKVAAIGAGAVGTVDSKTGEVIFGDLIRWSH-VPIGQMIEARFGLPTYVDNDVK 180 Query: 192 MLALAEK----WQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNP-D 246 + + + D +++ G+G + + ++ RGS+ +G+IGHTIV+ D Sbjct: 181 CAIIGDCSTPPIKGA---DDVVLLSFGCGVGGAVIHRGRLVRGSINSAGEIGHTIVDYTD 237 Query: 247 GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWIT 306 G +C CGR GC + + +QA + P + +++AAW+ EPW Sbjct: 238 GRLCSCGRRGCAAAYLTKDQIIQQA----------AKSCPGISSLEEIMAAWERREPWAE 287 Query: 307 SWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSV 366 + +DR + + +++ N LN + L G+ + ++ + + P Sbjct: 288 ALLDRISTYMAITVSNAACFLNPRNMILGGKLMNESPFLFDLVLEKYSAMMY----PPLR 343 Query: 367 KATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 AT L +G + VE + ++ Sbjct: 344 GATTFIRSPLGTDATCVGGAMIAVEKHVYKV 374 >UniRef50_B8E0R0 ROK family protein n=2 Tax=Dictyoglomus RepID=B8E0R0_DICTD Length = 396 Score = 309 bits (793), Expect = 1e-82, Method: Composition-based stats. Identities = 79/405 (19%), Positives = 145/405 (35%), Gaps = 35/405 (8%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 Q R NK +IL R + +++ +A+ +S V+ ++ L E ++ I+ Sbjct: 8 RGGRASQQREVNKTIILNAFLRCRNISRTEIAKRFNLSKSTVTRLVNNLIDEGMIIEIEP 67 Query: 63 ESQTR-GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL 121 S+ + G + + PE L + V T + ++ K +L PQ Sbjct: 68 SSEKKIGRKAIVLGLNPEYRNALAIKVGVTYTYLSKIDFAMNIKEIKSFLTPK--NPQDF 125 Query: 122 LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK-- 179 L E+EK + T + + I G VD P W + + ++ E+ Sbjct: 126 LDELEKATQMLFPEGLEKTHAVGIGIPGIVDNTFKNVVVAPNLNWKN-LPLGDMIAERMR 184 Query: 180 ----LGIRVMVDNDCVMLALAEKWQNNS---QERDFCVINVDYGIGSSFVINEQIYRGSL 232 + I V +DN+ M +AE + + + V GIG+ +++ ++YRG Sbjct: 185 RAFSVEIPVKMDNEANMAVVAEGMLGTKIEYNDLNIVYVYVGEGIGTGLILDGKLYRGRY 244 Query: 233 YGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTA 292 +G+ GH + DG+ C CG GC E AS D EK T Sbjct: 245 NTAGEFGHMTIMKDGIKCKCGNLGCWERYAS----------LGGDIAEKAGFDLEKETAE 294 Query: 293 QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFG-ENWLNTIIR 351 + + + + + L N +N LN + I L G ++ I + Sbjct: 295 IADEKA----------LKKYVDELTVGLINIINGLNPDVIILGGPLIKKDTKDVWEFIRQ 344 Query: 352 QTGFNPFDRDEGPSVKATQIGFGQLSRA-QQVLGIGYLYVEAQLR 395 + ++ +I +++G G Sbjct: 345 EVKKIVEEKSITSDAGKVRIELTSFLDYPAELVGAGIWAFWDIFE 389 >UniRef50_C6PDS2 ROK family protein n=1 Tax=Thermoanaerobacterium thermosaccharolyticum DSM 571 RepID=C6PDS2_CLOTS Length = 311 Score = 309 bits (792), Expect = 1e-82, Method: Composition-based stats. Identities = 61/314 (19%), Positives = 128/314 (40%), Gaps = 14/314 (4%) Query: 84 LCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKC---WHRHRKLWPDHT 140 + ++V T+I + + A+ +I + + L Sbjct: 3 IGVDVGGTNIAVGLVDENGKIIATGSRPAEPKRGYAAIAKDIAEISLELIKRCGLDISDV 62 Query: 141 INLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQ 200 ++ + + G D G+ W T V + + + + I + +DND + ALAE Sbjct: 63 ESMGIGVPGVADNEKGIVLRAVNLYW-TKVPLVKEIHKYIDIPINMDNDANVAALAEGIF 121 Query: 201 NNSQERDF-CVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLE 259 + + I + G+GS F++N +++ G+ + + ++GH ++ +GV+C+CG+ GC E Sbjct: 122 GAGKGTNSSVTITLGTGVGSGFILNGKVFNGAHHFAPELGHIVLGDNGVMCNCGKIGCFE 181 Query: 260 TVASLSALKKQARVWLKSQPVS-----TQLDPEKLTTAQLIAAWQSGEPWITSWVDRSAN 314 T AS +AL ++ + + S + E +T +I A + + + Sbjct: 182 TYASATALIREGKKAVMKDSNSLILKLAGGEIESITAKNVIDAAKQFDEAAMMIFNDYVK 241 Query: 315 AIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFG 374 + + + N +NIL+ I + G G+ L + + N +D + I Sbjct: 242 YLAMGIVNIINILDPEVIIIGGGVANAGDFLLKPLKEEVSKNILFKDLPYA----DIKKA 297 Query: 375 QLSRAQQVLGIGYL 388 +L ++G L Sbjct: 298 ELGNDAGIIGASIL 311 >UniRef50_C6JR29 XylR transcriptional regulator n=2 Tax=Fusobacterium RepID=C6JR29_FUSVA Length = 388 Score = 308 bits (791), Expect = 2e-82, Method: Composition-based stats. Identities = 72/392 (18%), Positives = 151/392 (38%), Gaps = 22/392 (5%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 +++R+ N+ L + +K +++ ISIP V+ IL+ + K + + Sbjct: 9 EKLRNENRT--FRFLVEVREFSKLEISQYLNISIPTVTKILERFLTNKLIYETGTNNGKL 66 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEK 127 G + + P+ +++ + V I + N + + + + I + Sbjct: 67 GRKAIKYQFNPDAYFSIGIKVEMNHISMVLINLDGKILKQTVVKEEFINSENFVFLVINE 126 Query: 128 CWHRHRKLWPDH-TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMV 186 + + + + G V+P + + +EE+ G+ + + Sbjct: 127 LKKFLWEFDKKEFIKGIGIVLPGIVNPENNMIKLGGNFSLLNQD--MKEIEEEFGLPIFL 184 Query: 187 DNDCVMLALAEKWQNNSQ---ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV 243 +N+ A+ E N+S +++ +++D GIGS ++ Q+YRG SG+IGH + Sbjct: 185 ENEANAGAIGEYIVNHSGLQTKKNILFVSIDTGIGSGIIVENQLYRGKGNKSGEIGHIPI 244 Query: 244 NPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEP 303 P+G C CG GCLE S AL K+ + E + G Sbjct: 245 IPNGDKCACGSEGCLEQYCSNLALMKEFEKEFQ---------CEIKEYEDIFQEKFIGNE 295 Query: 304 WITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEG 363 ++R + L + L +LN ++I + G+ + E + + F + Sbjct: 296 KGKKILERYTWILALGIKTALMMLNSDKIIIGGKISDYKEYFEPMLKEII----FSNNIF 351 Query: 364 PSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + + F LS +LG ++ + + Sbjct: 352 SNDADI-LEFSSLSDNANLLGAAFIPLGEFYK 382 >UniRef50_C7MXJ9 Transcriptional regulator/sugar kinase n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MXJ9_SACVD Length = 413 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 59/412 (14%), Positives = 137/412 (33%), Gaps = 55/412 (13%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE 63 + +R HN ++L+ + +++ +A ++ VS+++ L + V + Sbjct: 6 PADQHTVRRHNCALVLDTIAASPGISRAGVAARTGLTKATVSSLVDRLVTASLVREDGRQ 65 Query: 64 -SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEF-EYLQIDAPTPQAL 121 G + ++P G L + + + + + E + + + Sbjct: 66 HRSGPGRRGTSLSLSPHGPHGLGVEIAVDHVTTCLIGLTGEVRDEHTRRVDNRGRSVGRV 125 Query: 122 LSEIEKCWHRHRKLWPDH---TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 L+ I + + + + +A+ G V+ G + P W V++ L Sbjct: 126 LARIAREMNEALDRAHRNGIVVGGIGVAVPGLVEAANGWVRMAPNLGWRD-VDLITELHR 184 Query: 179 KLGIRVMVDNDCVMLALAEKWQNN-------------------SQERDFCVINVDYGIGS 219 ++ + E N + F ++ + G+G+ Sbjct: 185 RVAVP-----------FGELVVGNEADLAALAELAAPRLHCEDAAPDSFVYVSGEVGVGA 233 Query: 220 SFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQP 279 V++ +++RG+ G++GH V G C CG GCLE +A A+ +A V Sbjct: 234 GIVLDGELFRGTHGFGGELGHFPVQQRGPRCSCGARGCLERLAGQDAILDRAGVD----- 288 Query: 280 VSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSC 339 L + G+ + + +G +L +N+L+++ + L G Sbjct: 289 ----------DVDTLCVRLEDGDRTAAAAARSAGRLLGTALSGVVNLLDVSTVVLGGIYA 338 Query: 340 AFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVE 391 + + R ++ + + V G + Sbjct: 339 RLYPWLAGPLHTELT----ARVVSTPWRSVDVRRSTVGPEAAVRGAAISALR 386 >UniRef50_A3I7X3 Putative uncharacterized protein n=1 Tax=Bacillus sp. B14905 RepID=A3I7X3_9BACI Length = 383 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 64/403 (15%), Positives = 148/403 (36%), Gaps = 29/403 (7%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ + Q+R NK ++L+ + + ++ L++ ++S ++ I+QELE+E ++ Sbjct: 1 MKKQ-DQVQMRRQNKYIVLDAIRQMAPISRIQLSKYTKMSPTTITRIVQELEAEGFILEG 59 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 E G + + +T+ + + +I + + E + Sbjct: 60 VSEETAIGRRPTLIHMREDALYTIGIEIDCFTIRLGILDFLGKLIAFQEIKCSIKHRYEE 119 Query: 121 LLSEI---EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 + + ++ + + + + + G ++ G+ + Q W + L Sbjct: 120 AIHLLKNSIATIMSEYQIAQEKLLGIGIGVPGVINNEEGIIVSSEQLKWENC-RIGEDLN 178 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQ-----ERDFCVINVDYGIGSSFVINEQIYRGSL 232 V+VDN+ M +AE + ++ + G+G+S ++N ++YRG Sbjct: 179 GVFDCEVIVDNELKMQIIAE----IGDIYTPLYSNCILVGMGTGVGASILLNGEVYRGIQ 234 Query: 233 YGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTA 292 +G+I H +NP G +C CG+ GCL S L + T + + Sbjct: 235 NKAGEISHITINPFGEMCHCGKRGCLSMYISEMTLLNR-----------TPKNLTIQSIE 283 Query: 293 QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQ 352 +++ GE W A + +++ N + + + + G ++ + Sbjct: 284 EVLQCVDRGEQWAVDIQQDVATYLAIAINNLVCLYEPEAVIVSGEIIEH-NVTFQKLLSE 342 Query: 353 TGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 ++ P + F + V G + L Sbjct: 343 KCKQYIWKELQPHFV---LQFSNQLKEGVVKGAALQAQKQLLS 382 >UniRef50_A0P1K5 Xyl repressor n=2 Tax=Labrenzia RepID=A0P1K5_9RHOB Length = 421 Score = 308 bits (789), Expect = 3e-82, Method: Composition-based stats. Identities = 74/351 (21%), Positives = 142/351 (40%), Gaps = 13/351 (3%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVV-- 58 M + QIR N+ ++L+ L R + L ++ ++S V+ I +L ++ ++ Sbjct: 1 MTRKADRDQIRRQNRSIVLQALRRNGPMARIDLGQMTRLSPATVTAITSDLLDQELILSL 60 Query: 59 --NIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAP 116 Q RG + P+ +T+ + ++ +I+ + N A Sbjct: 61 ESEEPKAPQARGRPRTLLKLNPDAVYTIGVRLSVNNIDLALVNFAGEVVRSERSHFDSAT 120 Query: 117 T-----PQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVE 171 P+ L+ I + + + P + +A G V+ TGV P + Sbjct: 121 EDAASFPETLIGTIRQFLND-AGIVPSRVREIGVAAQGVVETETGVVAWSPAFAGR-KIP 178 Query: 172 VKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQER-DFCVINVDYGIGSSFVINEQIYRG 230 + L + G + ND M+ A W + ++ F VI +DYG+G ++ +++ G Sbjct: 179 IVGPLHDAFGADCYISNDTNMITEALHWSDPNRYSGTFAVIMLDYGVGMGLYLDNRLFSG 238 Query: 231 SLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLT 290 + + + GH P G +C CG+ GCLE S AL + A ++ ST Sbjct: 239 ASGTAAEFGHANHLPGGALCRCGKKGCLEAYLSDYALVRAASHLPENTDPSTIKAGVG-G 297 Query: 291 TAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAF 341 A+LI SG+ + + +G L + +++ +I L G + Sbjct: 298 LARLIELAGSGDKDACNAFHEAGRVLGYGLARVIAMIDPKRIVLTGAAMRA 348 >UniRef50_B9JL48 Transcriptional regulator protein n=1 Tax=Agrobacterium radiobacter K84 RepID=B9JL48_AGRRK Length = 345 Score = 307 bits (788), Expect = 4e-82, Method: Composition-based stats. Identities = 65/315 (20%), Positives = 120/315 (38%), Gaps = 10/315 (3%) Query: 81 DWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWPDHT 140 L ++ T + + + + A P A++ +IE PD Sbjct: 3 KVALAFDLGGTELRAALVDEEGNLLSFSAVPTQAAEGPDAVVRQIEVLAATVLAKTPDLL 62 Query: 141 -INLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKW 199 I + + G +DP GV P V + +L + + V ++ND A+ E Sbjct: 63 PIGIGIGAPGPLDPEAGVVIAAPTLTGWNEVPLADILSSRFQLPVRLENDANAAAVGEWR 122 Query: 200 QNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCL 258 + R + V GIG + + +I G + +IGH + +G C CG GC Sbjct: 123 YGAGRGARSIVFVTVSTGIGGGVIADSRILHGRRGLAAEIGHMTITNEGERCFCGAVGCF 182 Query: 259 ETVASLSALKKQARVWLKSQPVSTQLDPE---KLTTAQLIAAWQSGEPWITSWVDRSANA 315 E VAS +AL +QA + S +T ++ A ++G+ ++ A Sbjct: 183 EAVASGTALGRQATARTRRSDGSMLRKLSANADVTGRHVVDAARNGDALALELLNAEARW 242 Query: 316 IGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQ 375 +G+ N L++ + + + + G + +TI+ P+ + I Q Sbjct: 243 LGIGFTNLLHLYSPDVLVMGGGISHGFDLLHDTIMATICDRA-----MPAYRDVPIVAAQ 297 Query: 376 LSRAQQVLGIGYLYV 390 L R ++G L + Sbjct: 298 LGRHAGLIGAASLIL 312 >UniRef50_Q97D10 XylR transcriptional regulator n=1 Tax=Clostridium acetobutylicum RepID=Q97D10_CLOAB Length = 385 Score = 307 bits (788), Expect = 4e-82, Method: Composition-based stats. Identities = 81/398 (20%), Positives = 147/398 (36%), Gaps = 41/398 (10%) Query: 12 HHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSS 71 + NK IL LLYR++ K ++ +S+P V + + EL E V S T G Sbjct: 7 NSNKGKILNLLYRKRELTKLDISNEIGVSVPTVISNVNELIREGFVEESGVASSTGGRKP 66 Query: 72 GTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE---IEKC 128 P + +++ P + N L K + E+L + ++++ I K Sbjct: 67 IIVSFIPNSRYAFGVDINPYMARVVLTNLDLEIKYDVEFLIEELKDIKSIMKRISLIVKE 126 Query: 129 WHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMV-- 186 K+ + + ++ G VD V + + K L E + + Sbjct: 127 ALEFTKIDEKKVLGIGFSLQGTVDEENLVLKRAINIGVKDW-DFK-LFENLFQFPLFIEN 184 Query: 187 ----------DNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 K +ER+ I+V G+G+ VI Q+Y+G +G Sbjct: 185 EANAAALAEL-----------KIGIAKEERNLVYISVSSGLGTGIVIEGQLYKGKNKRAG 233 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 ++GH + P G +C CGR GC E AS AL + D + Q Sbjct: 234 EMGHMTLVPHGKLCRCGRKGCWEMYASQKALLDEFNEL---------SDVKVTKLEQFFN 284 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 ++ N + + N + I + + I L G + + +L+++ + Sbjct: 285 LIMIKNKVAEKCLNNYLNNLASGIQNIVLIFDPHYIVLGGEISGYSDVYLDSLKDKI--- 341 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 FD +E + ++ +L R +LG L ++ Sbjct: 342 -FDENEFYNRGDFKLFPSRLKRNSSILGAALLPIQKAF 378 >UniRef50_C7QHP4 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7QHP4_CATAD Length = 395 Score = 307 bits (788), Expect = 4e-82, Method: Composition-based stats. Identities = 81/406 (19%), Positives = 152/406 (37%), Gaps = 26/406 (6%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 MR + ++ ++ LL + +++ +AR +S VS I+ L ++ VV + Sbjct: 1 MRTPPTESRA-ERSRLAVVRLLRERGTMSRADIARSVGLSRSTVSGIIAALVADDLVVEL 59 Query: 61 DD----ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAP 116 D G ++ P + ++ + +AN + + Sbjct: 60 DAKLAPAGGGAGRPGAAVMLNPASGEAIGVDFGYRHVHVIIANVAHAVRIAKSVRLPVGY 119 Query: 117 TPQ---ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPW-TTPVEV 172 P + S++ + P + + +++ G D GV P + V Sbjct: 120 DPAQGFDVASDLIRTAIDEAGTDPSRILGVGVSVPGPFDTKRGVP--SSGMPSRWAGIPV 177 Query: 173 KYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGS 231 L +L + V+ D D + ALAE+ ++ D F + + GIG +FV N Q+ RG Sbjct: 178 ATELAARLNLPVLADGDTRLGALAERRWGAARGCDEFVYLKLHGGIGGAFVSNGQLARGI 237 Query: 232 LYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTT 291 G+G+IGH +V+ G +C CG GCLET L + + ++LT Sbjct: 238 NGGAGEIGHLVVDATGPLCRCGNRGCLETFVGLPVVMRALEPAYG----------DRLTL 287 Query: 292 AQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIR 351 +I G+ + + G ++ NILN + + G A GE + + Sbjct: 288 RNVITMAWQGDRGCIRALSDAGTMAGRAVGMLGNILNPQSVIIGGALSAAGELLMGPLRE 347 Query: 352 QTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 + A + G L LG + + +++ Sbjct: 348 AAATASL----PLAGDAMTLQVGSLGPQACALGAVAMVLGETDQKL 389 >UniRef50_P50456 Protein mlc n=167 Tax=Gammaproteobacteria RepID=MLC_ECOLI Length = 406 Score = 307 bits (787), Expect = 5e-82, Method: Composition-based stats. Identities = 81/398 (20%), Positives = 163/398 (40%), Gaps = 12/398 (3%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID- 61 + QI+ N + L+ + ++ L+RLAQ++ +++ I++E+ V ++ Sbjct: 6 QPGHIDQIKQTNAGAVYRLIDQLGPVSRIDLSRLAQLAPASITKIVREMLEAHLVQELEI 65 Query: 62 DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP--- 118 E+ RG + ++ E L L ++ I + + E Sbjct: 66 KEAGNRGRPAVGLVVETEAWHYLSLRISRGEIFLALRDLSSKLVVEESQELALKDDLPLL 125 Query: 119 QALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 ++S I++ + RH+K + ++A+ + G +D G+ MP + + LE+ Sbjct: 126 DRIISHIDQFFIRHQKKL-ERLTSIAITLPGIIDTENGIVHRMPFYEDVKEMPLGEALEQ 184 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 G+ V + +D +AE S+ RD + +D+ +G+ + + + + Sbjct: 185 HTGVPVYIQHDISAWTMAEALFGASRGARDVIQVVIDHNVGAGVITDGHLLHAGSSSLVE 244 Query: 238 IGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 IGHT V+P G C CG +GCLET+AS+ ++ + A++ L +Q +S+ L + LT L A Sbjct: 245 IGHTQVDPYGKRCYCGNHGCLETIASVDSILELAQLRL-NQSMSSMLHGQPLTVDSLCQA 303 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNP 357 G+ + +G L +N+ N +I + + I Sbjct: 304 ALRGDLLAKDIITGVGAHVGRILAIMVNLFNPQKILIGSPLSKAADILFPVISDSIRQ-- 361 Query: 358 FDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + + + Q S + G L +A Sbjct: 362 --QALPAYSQHISVESTQFSNQGTMAGAA-LVKDAMYN 396 >UniRef50_Q1Q3C7 Similar to glucokinase n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1Q3C7_9BACT Length = 322 Score = 306 bits (786), Expect = 7e-82, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 137/317 (43%), Gaps = 8/317 (2%) Query: 81 DWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCW---HRHRKLWP 137 + + +++ T+++ + + +F Q + +I + ++ ++ Sbjct: 6 KYIIGVDLGGTNLKAGIVGRDGNILYQFSIKTNAHAESQVISHQICELIAGIIKNVRIEK 65 Query: 138 DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAE 197 + + L G +D P + +K ++ + G+ +++ND A E Sbjct: 66 SDILGIGLGSPGLIDKKGETILFSPNLSKWRDIPIKKIISDTFGLPCILENDANAAAWGE 125 Query: 198 KWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYG 256 KW ++ ++ + GIG +++ +++RG +G+IGH + DG +C+CG YG Sbjct: 126 KWVGAGKDVSSLVMLTLGTGIGGGIILDNKLWRGINNTAGEIGHMSIQTDGPLCNCGNYG 185 Query: 257 CLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAI 316 C+E AS + ++ R L+S S E++T ++ A G+ S ++ + + Sbjct: 186 CIEVYASAPGMVRRFRELLESGKASLLKKDEEITAKRINEAAVQGDGASLSIIEETGRYL 245 Query: 317 GLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQL 376 G+++ N ++ILN + L G GE + + R R S K T+I F QL Sbjct: 246 GIAIVNIIHILNPGAVVLSGGLIGSGELLMRPVKRTIEE----RVLKASYKDTKILFSQL 301 Query: 377 SRAQQVLGIGYLYVEAQ 393 ++G ++ Sbjct: 302 GTDAGIIGAAGCLLKEL 318 >UniRef50_C9NFC9 ROK family protein n=10 Tax=Streptomyces RepID=C9NFC9_9ACTO Length = 418 Score = 306 bits (786), Expect = 7e-82, Method: Composition-based stats. Identities = 75/385 (19%), Positives = 143/385 (37%), Gaps = 28/385 (7%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRA---NKSTLARLAQISIPAVSNILQELESEKRVVN 59 + + +R HN ++L + + A ++ ++ ++ AVS+++++L V Sbjct: 10 SKADKDTVRRHNLSLVLRAVRDEGEAGEATRAGVSARVGLTRAAVSSLVEQLLDSGFVTE 69 Query: 60 IDDESQT-RGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLS-PKGEFEYLQIDAPT 117 G +A G L + + + V + + + E+L Sbjct: 70 SGKTFSGQAGRPGTALKVARTGPAGLGVEINIDYVSVCVVDLAGTGRVRQTEHLDNRGAP 129 Query: 118 PQALLSEIEKCWHRHRKLWPDH---TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKY 174 P +L+ R + + ALA+ G V G + P W V + Sbjct: 130 PGEVLARAAGIAARTLDSAREQDLCPVGTALALPGLV--SGGSVRQAPNLGW-NQVAAED 186 Query: 175 LLEEKLG--------IRVMVDNDCVMLALAEKWQNN-SQERDFCVINVDYGIGSSFVINE 225 L E L + V +N+ + ALAE W R F + + G+G + V++ Sbjct: 187 LFGEALAGLRPGTAALPVRSENEANLAALAELWFGGLGTVRSFLYLTGEIGVGGALVLDG 246 Query: 226 QIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLD 285 ++ RG+ +G+IGH +V+P G C CG GCLE A SAL + A + + + ++ Sbjct: 247 ELLRGAHGFAGEIGHVVVDPAGPECRCGSRGCLEQYAGQSALLRAAGIGEGAGGAAGVME 306 Query: 286 PEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENW 345 E Q+G+P + V + +G L +N+ + + + L G Sbjct: 307 LE--------RRAQAGDPVALAAVADAGRMLGQVLSGAVNLFDPDAVVLGGIYRGLMPWL 358 Query: 346 LNTIIRQTGFNPFDRDEGPSVKATQ 370 + + Sbjct: 359 APPADEELTGRVVSGLWSRGGGRLR 383 >UniRef50_B7DT25 ROK family protein n=1 Tax=Alicyclobacillus acidocaldarius LAA1 RepID=B7DT25_9BACL Length = 389 Score = 306 bits (786), Expect = 8e-82, Method: Composition-based stats. Identities = 82/400 (20%), Positives = 143/400 (35%), Gaps = 21/400 (5%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M + +R N+ I+ L KR +++ L R +S P +S I+++L + + + Sbjct: 1 MPMKASPPLVRRLNERRIMNALREHKRLSRADLERQLNLSAPTISRIVEKLLRDGWIREL 60 Query: 61 DDESQ-TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ 119 T G I PEG L + + N + + A P Sbjct: 61 YPGESQTAGRKPILLDINPEGSGALGVELGRGCTRIVYTNMLAELRAS-RTISRSATGPN 119 Query: 120 ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAP-WTTPVEVKYLLEE 178 L+E+ K + L + I L +A G P + P + E LE Sbjct: 120 D-LAEMVKSFLVEESLTEERLIGLGVAAPGACFPNRDMVVPAPDLGTEWSKSEAAQQLER 178 Query: 179 KLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 +LG+ V + ND LAE W +Q + + D G+G+ + IY G+ +G+ Sbjct: 179 ELGVPVHLANDANAAVLAETWFGTAQHAQHVAFVLADVGLGAGLAVAGSIYEGAARKAGE 238 Query: 238 IGHTIVNPD-GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 HTIVN + V CD G GC+E+ AS A+ + + + T ++ Sbjct: 239 FSHTIVNFESDVRCDDGHAGCVESQASGKAIFARLKAVREVHA--------HETIEYVVK 290 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 SG S +DR+ + + N + + + L GR + + Sbjct: 291 RACSGVEPDASVIDRAFRYLAAGIANLVRAFDPEVVVLGGRMVLASQIAYERLRGYVHDC 350 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 + I + +G L ++ Sbjct: 351 LRPEHKL-------ITCARFGLDAVAMGAASLVLQTVYDH 383 >UniRef50_D2PQN5 ROK family protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PQN5_9ACTO Length = 402 Score = 306 bits (785), Expect = 8e-82, Method: Composition-based stats. Identities = 79/393 (20%), Positives = 144/393 (36%), Gaps = 31/393 (7%) Query: 18 ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR--------GH 69 +L + Q + +AR +S AV+ + L V + G Sbjct: 19 VLTRILTQGPIPRVQIARRTGLSQAAVTKAVAPLIEAGFVTDEPVAPTEGSGESQLGIGR 78 Query: 70 SSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCW 129 + + + + VTPT + + + D+ T + ++ I + Sbjct: 79 PVSPLTVLADSVSVIGVKVTPTGLIGVTTDLTAGIRTVRHSPLRDSST-ETVIPRIVELA 137 Query: 130 HRHRKLWPDH------TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIR 183 D I + +A+ G VD GV + P W V + L E+LG Sbjct: 138 RELMDFLDDQANGAGPLIGIGVAVSGDVDAAHGVVRDSPFMGWR-EVPLAATLTEELGAP 196 Query: 184 VMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 V+V ND L +AE W F V+ + G+G +N ++ G+ SG++GH Sbjct: 197 VVVTNDVRALTVAEHWFGVGVDADSFAVVTIGSGVGCGLYLNGEVVSGAYGVSGELGHLP 256 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 + P ++C CGR GC+ETVAS A+ + R +L A I +G+ Sbjct: 257 LAPGELICTCGRRGCVETVASSDAILARTRETTGR---------PELDLAGAIELAHAGD 307 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDE 362 D++ IG +L +N++ + + G A + + + R + F Sbjct: 308 EHAREAFDQAGEVIGSALAAMVNLVGPELVVIAGEGVADYDLYEQRMRRAFSAHAFG--- 364 Query: 363 GPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + ++ + G + + +R Sbjct: 365 --AAGDCRLMLRSHTFDDWARGAAATVIRSYVR 395 >UniRef50_B5GK61 ROK family protein n=2 Tax=Streptomyces RepID=B5GK61_9ACTO Length = 402 Score = 306 bits (785), Expect = 9e-82, Method: Composition-based stats. Identities = 81/384 (21%), Positives = 155/384 (40%), Gaps = 11/384 (2%) Query: 15 KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTW 74 + ++++L+ ++ L + ++ P +SNI++ L + V D TRG Sbjct: 8 RALVVDLIRSSGPISRVELVKSTGLTQPTISNIVRRLIEDGVVRETGDTVATRGKPRSLL 67 Query: 75 LIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRH-- 132 +I + + +++ ++ C V + G + P+A+ + + Sbjct: 68 VINSHAAYGIGIHLATDALTCVVTDTRGGTVGRLLVAAPPSGDPEAVTEALAGLYRDVVA 127 Query: 133 -RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCV 191 L LA+ G VD G +P T + + L LG+ V+VD+D Sbjct: 128 GLGLPARGVAGLAVVGPGPVDVAQGSFLALPGRSPATGLALAPALGGALGVPVLVDSDAS 187 Query: 192 MLALAEKWQNN-SQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVC 250 + E W S+ R F + ++ GIGS V++ ++RG+ +G++GHT V G C Sbjct: 188 AATVGEFWGRQVSRARTFGCLYMNSGIGSGVVLDGALHRGASSNAGKLGHTAVVRGGREC 247 Query: 251 DCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLT--TAQLIAAWQSGEPWITSW 308 CG GCLE A+ L ++AR + + + L A G+ + Sbjct: 248 PCGNRGCLEQYAAPRVLVERARALPGLARRLRIAEGDPVDRAFDVLARAALYGDEAARAL 307 Query: 309 VDRSANAIGLSLYNFLNILNINQIWLYG-RSCAFGENWLNTIIRQTGFNPFDRDEGPSVK 367 +D SA + + N+ +++ + L G A G +++ I + + F R V Sbjct: 308 LDESAELLAEAAVTLTNLWDLDTLVLAGPGFAAAGSLYVSAIRARLAASAFTRG----VH 363 Query: 368 ATQIGFGQLSRAQQVLGIGYLYVE 391 + R +G L ++ Sbjct: 364 EVTVDLSSNPRDAAAIGGAALVLQ 387 >UniRef50_D1VEG0 ROK family protein n=1 Tax=Frankia sp. EuI1c RepID=D1VEG0_9ACTO Length = 423 Score = 306 bits (785), Expect = 9e-82, Method: Composition-based stats. Identities = 70/414 (16%), Positives = 129/414 (31%), Gaps = 35/414 (8%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELES-EKRVVN-I 60 A I +++R HN ++L ++ ++TL ++ + + +L S V Sbjct: 11 AGIKQEELRRHNLSLLLRYVHLAGPTQRATLTAQTGLNRSTIGALAADLASTAGLVREES 70 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAP-TPQ 119 D G S + E L ++ I + Sbjct: 71 PDTHSGAGRPSLVVVPETERYQVLAFDLGVDRIIAARVGLGGALLSREVVPLPPGERGFT 130 Query: 120 ALLSEIEKCWHRHRKL--WPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 A++ R + H + +A+ V G + P W + L Sbjct: 131 AVVDLTAATARRLAEALGPLTHCAGIGVAVPAVVRSADGFVRFAPNLGWEQQ-PLGAALR 189 Query: 178 EKL--GIR------------VMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFV 222 L + V V ND + ALAE + ++ D ++ G+G+ + Sbjct: 190 AALVDALPDRAIGGPVGSPAVQVANDADLGALAEHARGVARGHDDIVYLSGQVGLGAGII 249 Query: 223 INEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVST 282 N + RG +G+ GH IVNP G C CG GC ET A+ + A Sbjct: 250 CNGRPLRGHGGYAGEAGHMIVNPTGQRCRCGARGCWETEIGTDAILRAAGHEPGDGG--- 306 Query: 283 QLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFG 342 + ++A +G+ + + + + + N +N+ N + G Sbjct: 307 -------SVRAVVAEASAGDARARLALYEVSRWLAVGVGNLVNLFNPELVIFGGEL---- 355 Query: 343 ENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 + L + S + + L + G L L Sbjct: 356 RDLLEVVEHDVVGRMGAGGLTVSREHVALVPSALGGDSSLFGAAELAFAHLLDD 409 >UniRef50_C6B6F2 ROK family protein n=8 Tax=Rhizobium RepID=C6B6F2_RHILS Length = 400 Score = 306 bits (785), Expect = 1e-81, Method: Composition-based stats. Identities = 80/398 (20%), Positives = 161/398 (40%), Gaps = 22/398 (5%) Query: 1 MRA--CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVV 58 M+A N +Q + HN+ V++E + +++ +AR+ ++ VSNI++ELE +V Sbjct: 1 MKAISGTNLEQAKSHNRRVVIEAVRTNGPLSRAAIARMTALTAQTVSNIVEELERSHLLV 60 Query: 59 NIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP 118 + RG + I P G +++ L + + + + E ++ P P Sbjct: 61 PSQAQKLARGQPIIPYSINPRGAYSIGLELGRQRASGVLTDLSGAVCARIER-HVEHPDP 119 Query: 119 QA---LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 Q L I + + + + +A+ G+ S + P V++ Sbjct: 120 QRAMPALQAIVEDLQEAFAFDRNRLLGVGMALPGRYADGGTTSLSPLNLPGWQDFPVRHE 179 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINV--DYGIGSSFVINEQIYRGSL 232 LE+++ + V+V+ND A+ E+ ++ F + + GIG+ ++ +Y+GS Sbjct: 180 LEQRIKVPVLVENDATAAAIGERLHGVARGLGSFVYLFLAGGGGIGAGMFLDGHLYKGSR 239 Query: 233 YGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTA 292 +G+IGH IV P G +C CG+ GCL+ S + + E+L++ Sbjct: 240 NNAGEIGHIIVEPHGKLCSCGKRGCLDRYVSP----------AVAYEFMGIANAEELSSD 289 Query: 293 QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQ 352 L A G + W+D++ + ++ + I L G + + + Sbjct: 290 DLDALIAKGGEGLDVWLDQAVQPLRQTVDFLELAFDPQTIVLGGSISTS---LMLRLAER 346 Query: 353 TGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYV 390 D ++ G + +LG L + Sbjct: 347 LEPLHTPIDPNQKRAVPRVMIGMTGKDTAILGAAALPI 384 >UniRef50_A6EIN5 ROK n=1 Tax=Pedobacter sp. BAL39 RepID=A6EIN5_9SPHI Length = 373 Score = 306 bits (784), Expect = 1e-81, Method: Composition-based stats. Identities = 85/374 (22%), Positives = 155/374 (41%), Gaps = 15/374 (4%) Query: 28 ANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIAPEG-DWTLCL 86 + L++L S+P V+ I+ +L + VV T G + T+L+ E + + + Sbjct: 2 LTLTDLSKLTHKSLPLVTGIVNDLVQDGYVVEHGLAPSTGGRRALTFLLNKEKQKFIVAV 61 Query: 87 NVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCW---HRHRKLWPDHTINL 143 +V + + + + E + ++ Q ++ + + + + Sbjct: 62 SVDQLITTVVIYDMLNNIQVEPAKIYLNLADEQTSMALFISFITGYIAKSGISEEQILGI 121 Query: 144 ALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNS 203 + + G ++ GV+ +K L + L V +DND ++ALAE Sbjct: 122 GIGMPGVINAKLGVNH--TFFKIKNEGNLKNYLSDALKFPVYIDNDSSLIALAELKFGEG 179 Query: 204 QE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVA 262 + +D V+N+ +GIG +IN I+RG +G+ H ++ +C CG+ GCLE Sbjct: 180 RNMKDVMVVNIGWGIGLGMIINGDIFRGHSGYAGEFSHIPLSQSNKLCSCGKRGCLEVDT 239 Query: 263 SLSALKKQARVWLKSQPVSTQ----LDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGL 318 SL L ++A+ + + S LD KL + A + G+P S + +A IG Sbjct: 240 SLLVLVERAKAEIAAGISSRLEQLFLDDSKLPGEHFLIAARDGDPLAVSILSDAAFLIGK 299 Query: 319 SLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSR 378 L ++ILN I L GR G+ ++ I R T+I + Sbjct: 300 GLSTLIHILNPELIVLGGRGATAGKIFMAPIQHAINEFCIPR----LADHTKISVSASAE 355 Query: 379 AQQVLGIGYLYVEA 392 ++LG L VE Sbjct: 356 RSELLGAAILVVEN 369 >UniRef50_D0MF67 ROK family protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MF67_RHOM4 Length = 417 Score = 305 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 70/401 (17%), Positives = 141/401 (35%), Gaps = 25/401 (6%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M N + + +N ++LE + R +++ +AR +++ VSNI +EL + Sbjct: 1 MLLGTNLKYAKAYNFRIVLETIRRFGPISRAEVARRTELTAQTVSNITRELLDMGLIYEA 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ- 119 + RG S I P+G +++ L++ + + + + A P Sbjct: 61 ERLRDGRGAPSIQLTINPDGAYSIGLDLDRDHLTALLVDFAGQIRHRIHQALDGALPPDK 120 Query: 120 --ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVD-PVTGVSQTMPQ---APWTTPVEVK 173 LL+ + + L + + + I G +D G + P V V Sbjct: 121 AMDLLARTAETLLQETGLPREKIWGVGVGIPGPLDVSEDGHVTNVANPKAFPGWHRVPVV 180 Query: 174 YLLEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSL 232 +LE +L + V ++N+ A+ E+W Q F + G+G + N Q Y G Sbjct: 181 EILERRLELPVFLENNATAAAIGERWYGAGQHIATFFYVFFSEGLGGGLIFNGQPYDGHS 240 Query: 233 YGSGQIGHTIVNPD---GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKL 289 +G++G+ + P+ + L + ++ L ++ + Sbjct: 241 GNAGELGYCYLPPEVLTAEDLTVFQKPHLGILFNVPRLYRRLEAAGHTAR---------- 290 Query: 290 TTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 + L +Q P + W+ + + IL+ I+ GR E + I Sbjct: 291 SLEDLEQLFQEKNPILLDWLHTGLEHLAPIILAVEYILDPEAIFFGGRL---PEPIMTYI 347 Query: 350 IRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYV 390 I ++ G LG+ L + Sbjct: 348 IEWLTQR-LAALRIEEKPPVRLLPGTAGVDAAALGLATLPL 387 >UniRef50_A0LTZ1 ROK family protein n=1 Tax=Acidothermus cellulolyticus 11B RepID=A0LTZ1_ACIC1 Length = 436 Score = 305 bits (783), Expect = 1e-81, Method: Composition-based stats. Identities = 76/405 (18%), Positives = 144/405 (35%), Gaps = 24/405 (5%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M IR N V+L L+ +++ L ++ + +++EL + V Sbjct: 1 MPGVATQDVIRQRNLSVLLRRLHVDGALSRADLTAAMGLNRSTIKALVEELAAMNLVTET 60 Query: 61 DDESQTR-GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQI-DAPTP 118 + R G S + + + L NV ++ +Y + Sbjct: 61 IPGTAQRAGRPSHVVAVRCDTAYVLAANVGVDTVTVAAFGLGGHILARRDYPLGGPGASA 120 Query: 119 QALLSEIEK---CWHRHRKLWPDH-TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKY 174 A+++ + + PD + + +AI G V G + P W V Sbjct: 121 DAVIARLAAECAAIRSALERSPDRRLVGIGVAIPGMVHAEDGRVEFAPNLMWRN-VPFAA 179 Query: 175 LLEEKLGI--RVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGS 231 L L + + + ND + ALAE+ + + I + GIG +++ ++ G Sbjct: 180 PLSAALDVDVPIRIGNDGDLGALAEQVRGAGRGVAHLVYIAGEVGIGGGIIVDGRLVLGR 239 Query: 232 LYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTT 291 +G+IGH +V+PDG C CG GCLET A+ ++ +T Sbjct: 240 HGFAGEIGHVMVHPDGRPCRCGGRGCLETEVGEEAILTACGRDPRAGRQATH-------- 291 Query: 292 AQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIR 351 ++ A + G+ + A +G L + +N+ + + + G + I Sbjct: 292 -EVFEAARRGDRRAQDGLRHIAVWLGRGLGSIINVFDPEVVIIGGPLSSLLPLAEPVIRE 350 Query: 352 QTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 + + P ++ QI L + G L E L Sbjct: 351 ELAASTL-----PHRRSVQIRPPGLGEDSSLFGAAELAFERLLED 390 >UniRef50_C4ZGB0 Putative NAGC-like transcriptional regulator n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4ZGB0_EUBR3 Length = 412 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 78/413 (18%), Positives = 161/413 (38%), Gaps = 27/413 (6%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 ++ I+ ++++NK IL++L + ++ +A ++ AV+ + ++ ++ Sbjct: 2 VKTGISLDSVKNNNKSQILKILQKNGAMSRKDIANQIGLTPAAVTMLCNDMMEAHMILEK 61 Query: 61 DD--ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP 118 + E + G I + + + +N+ V N + E + P Sbjct: 62 GEMKEQKRAGRKKVLVDINYDFKYIVSVNIEAVDTSITVTNIRGNVLVETKVHTRTDIEP 121 Query: 119 QALLSEIEKCWHRHR---KLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 Q L E+ K +L + + + + G VD G+S W V+++ + Sbjct: 122 QLFLEELAKEIKLQLWEKELKLSDILGIGICVPGIVDRNNGISIHAYGI-WNNQVKIREI 180 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQ-ERDFCVINVDYGIGSSFVINEQIYRGSLYG 234 LE+++ V+++N+ A AE + + I G+GS+ V++ ++Y G+ + Sbjct: 181 LEKQIQCPVILENNVKAFAEAEMLYGVGKYGNNIVFIKWGPGVGSAIVVDNKLYEGNQHN 240 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLD----PEKLT 290 + +IGH I+ PDG+ C CGR GCLET S+ AL + + + + + L Sbjct: 241 AAEIGHYIIEPDGLKCRCGRQGCLETRVSMFALCDRIKEIYSKENTPVLYEETAGDKNLI 300 Query: 291 TAQLIAAWQSG---------EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAF 341 T +L+ +W + I+ + + + N L IL + ++G Sbjct: 301 TRELLTSWVENEGNGYITRMDKTISEILVGAIERMARVAVNVLTILAPDCTIVFGSMFEN 360 Query: 342 GENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + F + + I LS +G L Sbjct: 361 TSIY-------KLFIQYCTKYDENYTDKLISRSHLSDKMAYIGGTALIASTYF 406 >UniRef50_A3UNW3 Probable transcriptional repressor in the Rok (NagC/XylR) family n=1 Tax=Vibrio splendidus 12B01 RepID=A3UNW3_VIBSP Length = 405 Score = 305 bits (782), Expect = 2e-81, Method: Composition-based stats. Identities = 74/364 (20%), Positives = 140/364 (38%), Gaps = 14/364 (3%) Query: 1 MRAC--INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVV 58 MR+ ++ +++HNK VIL L+ ++ +++L + V+ ++ L + +V Sbjct: 1 MRSGLGVSLDDVQNHNKRVILNALHNSGSCSRKEISQLVGLDQATVTRAIKPLIEQGLIV 60 Query: 59 NIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP 118 RG SS + + + + T+ + +P Sbjct: 61 ETGVRKAARGRSSIYLGFNTQHLRIVSVRIQRTNFSIDTYDLNGVSLTNVVKPINTDNSP 120 Query: 119 QALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 + L+ + K K + +A+A+ G M A ++ + E Sbjct: 121 EELIEYLTKQVSDVLKEQECDVLGIAVAMPGPFLEQDNKIMLMTDAKNWQDIDFISHMRE 180 Query: 179 KL-GIRVMVDNDCVMLALAEKWQNNSQERD--FCVINVDYGIGSSFVINEQIYRGSLYGS 235 + + +D + ALA Q S +++ G+GS VI Q+Y GSL + Sbjct: 181 QFPDYPIYAGHDAKLAALAVWRQLQSTYEASVLLYVSLGQGVGSGLVIEGQVYHGSLGTA 240 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLI 295 G+IGHT +N G C CG GCLE +S +AL ++ + + ++ Sbjct: 241 GEIGHTSINFQGPQCKCGNLGCLELYSSTTALVERYKQ---------EASLVSADFEMVV 291 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF 355 A+ E + VD A + L N +N LN + + + G ++L+ + T Sbjct: 292 NAFHDRESAAINAVDYLAKCLAHGLVNNINQLNPDLVVIGDELTQLGADFLSRVKEYTYR 351 Query: 356 NPFD 359 Sbjct: 352 LLLP 355 >UniRef50_D1ANX8 ROK family protein n=1 Tax=Sebaldella termitidis ATCC 33386 RepID=D1ANX8_SEBTE Length = 388 Score = 304 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 89/391 (22%), Positives = 160/391 (40%), Gaps = 14/391 (3%) Query: 10 IRHHN--KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 ++ N LE + + ++ L+ +++ AV+ I+++L K + N + T Sbjct: 1 MKKLNITDYKALEEIRTNNKISRIKLSGSLELTPAAVTKIIKKLSGLKLIENNNILKSTG 60 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEK 127 G + I L +N P IE ++ + + +L + + Sbjct: 61 GRPEKSLKINHRYKMILGINFGPEFIETALSYLDGELLCMKRRNFYI-RSQEKILRILFE 119 Query: 128 CWHRHRKL-WPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMV 186 + D + + LA+HG V+ G+S P W + ++ L+E+K + V++ Sbjct: 120 EIDNVLEEYSKDDILGIGLALHGTVNREKGISIFSPHFGWKN-LNIQELIEKKYSLPVII 178 Query: 187 DNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI-VN 244 DND +A+AE +Q +F VI++ GIG + +N + Y GS + +G+IGH V Sbjct: 179 DNDVRAMAIAEHEFGRAQNTDNFLVIHISNGIGGAIFLNGKTYEGSDFSAGEIGHITAVE 238 Query: 245 PDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPW 304 C CG+YGCLE +S A+K + L+ + L T + + Sbjct: 239 NSSRRCSCGKYGCLEAESSDEAIKNKVLTELEKIQEKVDI---SLKTEDIYKMAAEKKEP 295 Query: 305 ITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGP 364 S V S+ IG ++ N LNILNI + + GR + + + N D Sbjct: 296 YFSVVRNSSYEIGKAVGNLLNILNIKLVIVAGRIVNTDSLFFVNLNKGIKKNILDG---- 351 Query: 365 SVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 K +L + + G L + Sbjct: 352 LEKDLHTVPAKLYDSIGIYGAFSLVTTNLFK 382 >UniRef50_D2BD51 Transcriptional repressor of the xylose operon n=2 Tax=Streptosporangineae RepID=D2BD51_STRRD Length = 401 Score = 304 bits (781), Expect = 3e-81, Method: Composition-based stats. Identities = 69/381 (18%), Positives = 138/381 (36%), Gaps = 23/381 (6%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + +R N V+L + +++ +A ++ VS+++ +L + V Sbjct: 9 QPADFADVRATNLAVVLRFVREHAPCSRADIAASTGLNKATVSSLVADLIDRRLVRETGL 68 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEY----LQIDAPTP 118 G + ++ + + V + + + I A Sbjct: 69 TENRVGRPATMLVLDGSPYAAIGVEVNVDYVTAVAVDLSGERLLSWRRSFSGATITAAQA 128 Query: 119 QALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 A ++ I + + LA+ + G V G + P W ++ L + Sbjct: 129 VATVAAIVRRVVNRMAKEERQVLGLAVGVPGLV-GTDGTVRIAPNLGWRDA-DLCGDLTK 186 Query: 179 KL---GIRVMVDNDCVMLALAEKWQN-NSQERDFCVINVDYGIGSSFVINEQIYRGSLYG 234 L G V VDND + ALAE + + + + G+G+ V++ ++ RG Sbjct: 187 ALRDPGFPVQVDNDANLAALAEHRFGPRAGTANLVYLTGEIGVGAGVVLDGRLRRGGQGY 246 Query: 235 SGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQL 294 G+IGH ++P G C CGR GCLE VA + A+ + A + ++ ++ Sbjct: 247 GGEIGHIQLDPLGAECRCGRLGCLEAVAGIGAVLEHAALSPAEV---------EIELDEV 297 Query: 295 IAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTG 354 + ++ +P I + + + +G + N+LN + L G L + + Sbjct: 298 VRLARAADPRILAVLATVGHNLGKGVAVIANLLNPEVVILGGYYVPLAPWLLPAVEAELR 357 Query: 355 FNPFDRDEGPSVKATQIGFGQ 375 R P Q+ Sbjct: 358 ----GRTIAPDAGGCQVVAST 374 >UniRef50_C6WCX5 ROK family protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WCX5_ACTMD Length = 382 Score = 304 bits (781), Expect = 3e-81, Method: Composition-based stats. Identities = 82/394 (20%), Positives = 152/394 (38%), Gaps = 29/394 (7%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDE-SQTRG 68 +R N ++L+ + ++++++A ++ VS+++ + VV E G Sbjct: 1 MRRLNSALVLDAIASAPGSSRASVATRTGLTKATVSSLVDRMIGAALVVEGAAEARSGPG 60 Query: 69 HSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEF-EYLQIDAPTPQALLSEIEK 127 ++P G L + V + + + + + A +P +L E+ Sbjct: 61 RRGTALHLSPAGPHGLGVEVGVDYLATCLVDLTGRVRKRWVRDSDNRASSPALVLGEVAA 120 Query: 128 CWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG-----I 182 R + +A+ G V+ +GV + P W V+V+ L LG + Sbjct: 121 AV-RIATREDVPVGGIGVAVPGLVESASGVLRVAPNLGWR-EVDVRGELGRLLGADAGGL 178 Query: 183 RVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 V V N+ + ALAE W ++ +DF ++ + GIG+ V++ ++ G G+IGH Sbjct: 179 PVQVGNEANLAALAELWHGDA-PQDFVHVSGEIGIGAGIVVDAGLFEGVSGFGGEIGHLS 237 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 V+P G C CG GCLE +A + + A A L+A + + Sbjct: 238 VDPSGPRCTCGSRGCLERLAGQDEILRAAGAA---------------DVADLLARLDADD 282 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDE 362 + V +A +G++L +N+L + + L G T+ + G Sbjct: 283 REAVAAVRTAARWLGIALSGAVNLLGLPAVVLGGAYARLEPWLRPTLEAELGGRVVSAAW 342 Query: 363 GPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 P + L V G V A L Sbjct: 343 SP----VAVTASSLGDEAAVRGAATSAVRAILAD 372 >UniRef50_B5YAB7 Xylose repressor n=1 Tax=Dictyoglomus thermophilum H-6-12 RepID=B5YAB7_DICT6 Length = 375 Score = 304 bits (781), Expect = 3e-81, Method: Composition-based stats. Identities = 78/403 (19%), Positives = 162/403 (40%), Gaps = 36/403 (8%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 MR + I +NK ++LE+L + +++ LAR+++++ A+S I+ EL + +V I Sbjct: 1 MREGRKPEYIGLYNKNLVLEILIKTGPKSRAELARISKLTKTAISEIVDELIEKNILVEI 60 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQA 120 +RG I P+ L ++++ + +A + +F Y + Sbjct: 61 GKVETSRGRRPTKLTINPDLK-ILAIDLSGLEGRSGIVDASGKVEEDFYYPIKRK---ED 116 Query: 121 LLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 L I+ ++ + I +++++ G ++ G W +K L+E+ Sbjct: 117 LFELIDPLLKKY-----KNIIAISISVPGIINKYNGEVILSVGLNWRN-FLLKEFLKERY 170 Query: 181 -GIRVMVDNDCVMLALAEKWQNNSQERDFC-VINVDYGIGSSFVINEQIYRGSLYGSGQI 238 + + ++ D L+E W ++ + + + GIG N I G G+I Sbjct: 171 PNLPIYIEKDTNSGLLSELWFGEGKKFNILFYLLFEKGIGLGIYYNGNIIEGFNNIEGEI 230 Query: 239 GHTIVNPD-GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAA 297 GHTIVN D +C CG GCLET+AS ++++ + + + + Sbjct: 231 GHTIVNGDIAEICWCGNKGCLETIASFPKIQEKFSDFKL--------------LEESLKS 276 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYG--RSCA-FGENWLNTIIRQTG 354 + G+ +++ +G+SL N ++I+ I + G + + ++ Sbjct: 277 YNQGDKD--PFLEEIFRYLGISLANAVHIIAPEAICVAGNRGMTRNILNLFTEILKKEVD 334 Query: 355 FNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 F+ L ++G G L R++ Sbjct: 335 KYIFE----YLKDKIYFYASPLGNDGLLIGAGILGFTNYFREL 373 >UniRef50_A6WEF3 ROK family protein n=2 Tax=Actinomycetales RepID=A6WEF3_KINRD Length = 390 Score = 304 bits (780), Expect = 4e-81, Method: Composition-based stats. Identities = 79/395 (20%), Positives = 145/395 (36%), Gaps = 35/395 (8%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 RA + Q R HN+ V+L LL+ + +++ LAR ++ VS I+ +L ++ V + Sbjct: 26 RAKVLPSQARAHNRSVVLGLLFHEGPVSRADLARATGLTRVTVSEIVGDLLTDGLVAELG 85 Query: 62 DESQTR-GHSSGTWLIAPEGDWTLCLNVTPT-SIECQVANACLSPKGEFEYLQIDAPTPQ 119 + R G + + + +++ + V + + E + Sbjct: 86 LRPEGRVGKPAMMVGLRAAEHHVVAVDLQRLPAARVAVLDLSGTVVSETTADVTGLRG-E 144 Query: 120 ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + +E P + + + G VD TG + W V + L Sbjct: 145 DATAALEDLCRAGIAGAPQRVVGVGIGTPGIVD-ATGRVVESARLGWR-SVPLAERLSHA 202 Query: 180 LGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 LG+ V V ND ALAE + F V+ V G+G+ V++ + RG +G+IG Sbjct: 203 LGVGVHVANDADTAALAEFTYGEASPSGFMVVAVGQGVGAGLVLDGHLVRGHRLAAGEIG 262 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 H V+P G C+CGR GCLET+ + + L + ++ S Sbjct: 263 HLTVDPRGEPCECGRRGCLETIVAPAYLDRTLAGRTPARRRS------------------ 304 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 + + + +G L + L++ ++ L G + L Sbjct: 305 --------ALRDAGHRLGAVLAPVVAALDLEEVILTGPAELLDGPLLEAARETVQTTCLP 356 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 + Q+ QL + G L + + Sbjct: 357 TEGTAP----QVRMAQLGANGVLQGAAALVLSGEF 387 >UniRef50_C9L9I3 Putative regulator n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L9I3_RUMHA Length = 393 Score = 304 bits (780), Expect = 4e-81, Method: Composition-based stats. Identities = 79/361 (21%), Positives = 155/361 (42%), Gaps = 24/361 (6%) Query: 12 HHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ----TR 67 N+ ILE ++R +ST+A+ QI+ V++I E + I E + Sbjct: 4 QENRSTILEYIFRNAPVARSTIAKQTQITPATVTSISGNFIQEGIIQEIGAEDNAADCSP 63 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGE--FEYLQIDAPTPQALLSEI 125 G I P+ + + + T I + N + F + D ++E Sbjct: 64 GRKRILLDIVPDKVYAMGIEFTSRHIRFSICNLRGDTVFQSSFSVKETDNGNITDFIAEK 123 Query: 126 EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQ----TMPQAPWTTPVEVKYLLEEKLG 181 + + + + + +A+ G +D PQ L+++L Sbjct: 124 AEDILKENPSFAASIVGMGIAVPGHIDAHQDKVITNSSLCPQFSG-------EALKKRLN 176 Query: 182 IRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 I ++ +N+ +A + S F +V G+ + + N ++++G+ Y +G+IGHT Sbjct: 177 IPIICENNVRCMAFGRYLFDRSSPDTFAFFHVGAGMFCALIENSKLFQGTNYYAGEIGHT 236 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDP----EKLTTAQLIAA 297 IVNP+G C+CG+YGCL+T S + L K R+ +S + + LT + A Sbjct: 237 IVNPNGKKCECGKYGCLQTYCSETWLLKYCRLLYESNADTILPSLKPCADALTIEDISNA 296 Query: 298 WQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRS---CAFGENWLNTIIRQTG 354 + G+ + +++ + +G+++ N I N ++I+L+G E ++ I +Q Sbjct: 297 FSLGDTLVGNYISTALKYLGITVSNLAIITNPDKIYLHGNLFSNTEIKEELMDYITKQLL 356 Query: 355 F 355 F Sbjct: 357 F 357 >UniRef50_B5GKQ2 ROK family transcriptional regulator (Fragment) n=1 Tax=Streptomyces sp. SPB74 RepID=B5GKQ2_9ACTO Length = 446 Score = 304 bits (779), Expect = 5e-81, Method: Composition-based stats. Identities = 72/364 (19%), Positives = 132/364 (36%), Gaps = 18/364 (4%) Query: 17 VILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLI 76 +LEL+ + +++ LA L + +S + +L V +S T G + Sbjct: 26 RVLELVASGQATSRAELAALLGAAPSTISLTVAQLVERGLVAEEGTQSSTGGRPRKVLRV 85 Query: 77 APEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRK-L 135 ++ + +V V + P+ L + + Sbjct: 86 GGNDEYAVAADVGGRHARIGVVLPGGGLREVANVPFEIDDGPETALPRLAEHLEALAAAR 145 Query: 136 WPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLAL 195 + L++ G VD G + P V LEE+ G+ +VDND +A+ Sbjct: 146 GHARLRGVGLSLPGPVDAAAGAVVLPSRMPGWNRFPVADWLEERFGVTAVVDNDANCMAV 205 Query: 196 AEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGV--VCDCG 253 E+ + R ++ + IG+ + + ++YRG+ +G I H V+ G C CG Sbjct: 206 GEQSVRPAGHRQSIMVKIGSAIGAGVIADGRLYRGATGAAGDITHIRVDAGGADVPCSCG 265 Query: 254 RYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSA 313 GCLETVAS +AL + R + +T ++ +P T V R+ Sbjct: 266 NTGCLETVASGAALVRILRERG----------LDVTSTEDVVRLAGDADPEATRAVRRAG 315 Query: 314 NAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGF 373 + +G L +N N + ++L G L + ++ + I Sbjct: 316 DHLGQVLAANVNFFNPDAVYLGGILST-----LEPFVAAVRGQLYESCHPLVTEHLTIER 370 Query: 374 GQLS 377 L Sbjct: 371 ASLG 374 >UniRef50_A4XCV6 ROK family protein n=2 Tax=Salinispora RepID=A4XCV6_SALTO Length = 381 Score = 304 bits (779), Expect = 5e-81, Method: Composition-based stats. Identities = 76/373 (20%), Positives = 139/373 (37%), Gaps = 18/373 (4%) Query: 19 LELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIAP 78 L+LL R +++ L Q++ V+ +++ L E + T G + Sbjct: 14 LDLLSRGAATSRADLVEALQVAPSTVTAMVRRLLEEGVLAEEGMGRSTGGRPPRILRLRE 73 Query: 79 EGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWPD 138 + + + E A P+ + + + + R Sbjct: 74 TKGVLAVAELGGRHARVGLCTPGGGLRTTEEVAIDIAAGPEEVFAVVGATFTRLLAATTP 133 Query: 139 H--TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALA 196 + + LA+ G V G + P + V+ L + + V+V+ND A+ Sbjct: 134 DQVLLGVGLALPGPVGFPEGRLVGPARMPGWSGVDAGAHLTDHFQVPVIVENDAKAAAMG 193 Query: 197 EKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVV-CDCGRY 255 E + D + GIG+ V QI+RG SG + H V G C CG Sbjct: 194 EYVTRRQETGDMIYVKAGTGIGACLVTGGQIHRGGRGLSGDVTHVRVADSGERHCSCGSQ 253 Query: 256 GCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANA 315 GCLETVAS +AL +Q S +T ++I A +P + + V + Sbjct: 254 GCLETVASGAALARQLAEQGSS----------AVTVPEIITAVGDADPTVVTMVRHAGGL 303 Query: 316 IGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQ 375 +G++L +N LN + + + G + L+ + T ++R ++ I Sbjct: 304 LGVALSGLVNFLNPDTVVIGGALSS-----LDVYVAATRSMLYERCLPSMTQSLTIEASG 358 Query: 376 LSRAQQVLGIGYL 388 ++G+G+L Sbjct: 359 AGSNAALIGLGHL 371 >UniRef50_Q1J318 ROK domain protein n=2 Tax=Bacteria RepID=Q1J318_DEIGD Length = 400 Score = 303 bits (778), Expect = 6e-81, Method: Composition-based stats. Identities = 72/405 (17%), Positives = 146/405 (36%), Gaps = 29/405 (7%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + ++ N+ +LEL+ R+ +++ LA Q++ V ++QEL + +V Sbjct: 9 RAGDQGFLKQLNRSAVLELIRREPGISRAELAARTQLTKVTVGAMVQELLDQGWLVEGSL 68 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALL 122 + + G + L V + G+ + + + TP+A Sbjct: 69 QQGSLGRPGRALHLNERRHVLLGAEVGVQGLRVVACTLTGRALGQ-RAILVPSTTPEATA 127 Query: 123 SEIEKCWHRHR---KLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE-- 177 + ++ + L +A+ G V P W V +L+ Sbjct: 128 QHLATLIMEVLTYPEVAGREVLGLGVAVPGPVALHDPTLLFAPNLGWRD-VPFLTVLKPF 186 Query: 178 -EKLGIRVMVDNDCVMLALAEKWQNNSQERDFC-VINVDYGIGSSFVINE---QIYRGSL 232 L +++N+ A E + + + + +++ GIGS ++ + RG+ Sbjct: 187 LPDLPGPWLLENEAKAAAFGEVYFSGGDKPELLAYLSLGTGIGSGLMVGAPVPYLLRGAQ 246 Query: 233 YGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTA 292 +G+IGH+++ G+ C CG GC ET+ S A+ + A P+ L P Sbjct: 247 GLAGEIGHSVLQSGGLYCHCGNRGCAETLVSGWAI-RAALDIPPGVPLEPALQP------ 299 Query: 293 QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQ 352 + + + + R+ A+G+ L N + LN + I L G GE L + Sbjct: 300 ------RMQDADVQVTLRRAGEALGMLLTNLHHTLNPSDIVLGGSLTRLGEPLLGPALAF 353 Query: 353 TGFNPFDRDEGPSVKATQIGF-GQLSRAQQVLGIGYLYVEAQLRQ 396 + D + + I G + + + Sbjct: 354 FREHQHDLYTRTASISIHIRTDSTF---LPARGAAAQVLASVFHE 395 >UniRef50_C5ESH3 Glucokinase n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5ESH3_9FIRM Length = 400 Score = 303 bits (778), Expect = 6e-81, Method: Composition-based stats. Identities = 77/400 (19%), Positives = 155/400 (38%), Gaps = 17/400 (4%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ N I+ +NK I +L+ +++ +A ++S VS ++ E+ E V++ Sbjct: 1 MKK-YNQLLIKDNNKKQIYQLIEDFPGISRTQIAEQLKLSKTTVSALVDEMMQEMFVIDE 59 Query: 61 DDESQTR-GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ 119 R G + + ++ + LN ++E + ++ ++ EY D Sbjct: 60 GASESNRQGRKPNSLTVNNSTNYVIVLNWHKDNLEIALVDSAMNIVLCREY---DMKNTG 116 Query: 120 ALLSEIEKCWHRHRKLW--PDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVK-YLL 176 L+E++ + R+ H + + + + G +D P + K L Sbjct: 117 DALAELKGYFEEFREAQCVDIHVMGVCVIVPGMIDEKHDEII-SVVLPTESQGNYKISRL 175 Query: 177 EEKL-GIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 L G + + ND A AE ++ IN++ G+G++ + + + G+ + Sbjct: 176 RSMLDGYPLAILNDTACFAYAETAFGKLDGENYIYININDGVGAAIIHDGHLLSGASGMA 235 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLI 295 Q GH V+ +G C CG GCLE AL + + P S+ EKL L Sbjct: 236 TQFGHFSVDRNGYPCACGNRGCLENQIGELALPRLFEEFGLDVPKSSG---EKLLFKDLA 292 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF 355 A ++ + + A +L N + + + + + G G+ +L + + Sbjct: 293 ALVRAEDEDALKLMSYMAEDFAYALCNAITLFHPELVIIGGIGRKLGDRFLELLKGKMQQ 352 Query: 356 NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 F + V + + +L A V G Y+ + Sbjct: 353 FGFRQ----FVSDVDVVYTKLGEASVVRGAAKYYINRYFK 388 >UniRef50_A6NTH3 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6NTH3_9BACE Length = 377 Score = 303 bits (778), Expect = 6e-81, Method: Composition-based stats. Identities = 76/395 (19%), Positives = 145/395 (36%), Gaps = 28/395 (7%) Query: 6 NNQQIRHHNKCVILELLYRQ-KRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 + ++R N+ + LY + K LA +S+P ++ L EL + V N + Sbjct: 8 STVELRKMNRNRVFRALYHTTQPLTKQDLAYQLSMSLPTLTQNLSELMAMGLVDNSETAG 67 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL--L 122 + G + P W L + ++ I + + G + + L Sbjct: 68 SSGGRKPRILSVVPGARWALGVEISSRHIRLVALDLQVRELGFRAFDLPFHAGEEYAVRL 127 Query: 123 SEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGI 182 ++ +C+ L + + + ++I G VD T P ++V+ + + + Sbjct: 128 AQTVECFIDELALDREKLLGVGVSIPGIVDAAQQSVTTAPTL-GVNRLDVRA-IAQHIPY 185 Query: 183 RVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTI 242 V + ND AE W S +D +++ G+G + + Y G+ SG+ GH Sbjct: 186 PVCLVNDANAGGFAECW-GRSGVQDMAYLSLSRGVGGAIFTSGTAYLGASGRSGEFGHMC 244 Query: 243 VNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGE 302 ++P GV C CGR GCLE S + L D +T G+ Sbjct: 245 IHPGGVPCSCGRKGCLEAYCSTARL----------------SDDMGITLEDFFQTLSQGD 288 Query: 303 PWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDE 362 + + + + + + N L+ I L G+ F E + I R + Sbjct: 289 DAFAALWAQYLDDLSVGILNIHAALDCQ-IVLGGKLSRFMEEKFDDI-----DGRLRRLD 342 Query: 363 GPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 +A + + +G +V+ +R+I Sbjct: 343 PAYQEAPYLSICRYYDHSNGIGAALYFVDQFIREI 377 >UniRef50_UPI0001B509AF ROK family protein n=2 Tax=Streptomyces hygroscopicus ATCC 53653 RepID=UPI0001B509AF Length = 408 Score = 303 bits (777), Expect = 8e-81, Method: Composition-based stats. Identities = 69/390 (17%), Positives = 136/390 (34%), Gaps = 23/390 (5%) Query: 15 KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTW 74 +L+L+ + +++ +AR + + V + L + + ++ RG Sbjct: 21 LRKVLDLVVSGEATSRAEIARRSGLVRTTVGKQVDHLVARGILEELESSESVRGRPPRVL 80 Query: 75 LIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHR- 133 ++P +V + + +A+ + A P+ +L + + Sbjct: 81 TLSPRAGTVAVADVDTLASQVAIADLTGRVLAQETVGVRIATGPETVLETVTERLMALLA 140 Query: 134 --KLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCV 191 + + + VD G + P V L ++ +VDND Sbjct: 141 QCGRDSGRVRAVVMGLPAPVDFQRGCTVRPTGMPGWGGYPVADELRKRFRCPALVDNDAN 200 Query: 192 MLALAEKWQNNSQERD---FCVINVDYGIGSSFV-INEQIYRGSLYGSGQIGHTIVNPDG 247 ++AL E QE+D I + G+G+ V ++YRG+ +G IGH G Sbjct: 201 LMALGE----AGQEQDGTPLVCIKISAGVGAGIVTAEGELYRGADGAAGDIGHIRAVGGG 256 Query: 248 --VVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWI 305 V+C CG GCL +AS A+ + + P ST DP L EP Sbjct: 257 GDVLCSCGNDGCLSALASRPAVLRSLGI-----PESTDEDPLH-GVRVLAERVADNEPNA 310 Query: 306 TSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPS 365 + ++ +G +++ N + + G ++ L+ + + R + Sbjct: 311 VRALRQAGTDVGEIAAMLVSMFNPRTLVVGGPLSELRDDLLSGVRAVV----YQRGLALA 366 Query: 366 VKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 I +L + + G L Sbjct: 367 TSKMTITTPRLGESAGIHGGIALATREVFS 396 >UniRef50_A7VV97 Putative uncharacterized protein n=1 Tax=Clostridium leptum DSM 753 RepID=A7VV97_9CLOT Length = 406 Score = 303 bits (777), Expect = 8e-81, Method: Composition-based stats. Identities = 71/377 (18%), Positives = 147/377 (38%), Gaps = 13/377 (3%) Query: 11 RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHS 70 +++ + IL ++ + ++ + ++ S+ V +I+ +L + V D E G Sbjct: 11 KYYKRNKILNIIRSNENISRYDVKKMTMYSMSTVLDIIDDLIASGMVYEADCEEPRVGRK 70 Query: 71 SGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWH 130 + PEG + + + C + + + E + A+L+ + + H Sbjct: 71 PVWLRLNPEGGYFIGAEFNAFHLHCAMLDFTGEIIYQSEEDLLPDQGKDAILALLIRHIH 130 Query: 131 RHRKL---WPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVD 187 P +++ I G ++ ++ + + V VK +LE++ + +D Sbjct: 131 AAIDAVKGKPGQIFAISVGIPGYLNEDKSIALSHFRLKDWENVPVKKILEDEFHLPCYLD 190 Query: 188 NDCVMLALAEKW-QNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPD 246 N+ ++A A KW + N RDF +++ G+ VIN + SG++GH V P Sbjct: 191 NNVNVMAFAYKWLRYNGDCRDFLFVSIRTGVRIVPVINNHLILSRGGLSGELGHVKVAPH 250 Query: 247 GVVCDCGRYGCLETVASLSALKKQARVWLKSQP-----VSTQLDPEKLTTAQLIAAWQSG 301 G +C CG GCL + S ++ + + + DP+K+T + Sbjct: 251 GTLCSCGGIGCLNSEISDLSILGKLKAGFEFGRFPEIMEMAGGDPDKVTLEMFCESAAQE 310 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 + AN +G +L +NIL + L G+ GE + I + N Sbjct: 311 HSDSVKLMLDLANILGEALGMAVNILAPEVVVLSGQLAQLGEPFFQEISKVLERNVVQE- 369 Query: 362 EGPSVKATQIGFGQLSR 378 + ++ + Sbjct: 370 ---IYQGLKVTASVFNE 383 >UniRef50_C0X1R1 Transcriptional regulator n=13 Tax=Enterococcus faecalis RepID=C0X1R1_ENTFA Length = 388 Score = 303 bits (776), Expect = 1e-80, Method: Composition-based stats. Identities = 64/394 (16%), Positives = 149/394 (37%), Gaps = 25/394 (6%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 + IR N+ IL + + + +++ L+++ ++ +VS+I +L ++ ++ Sbjct: 4 SKYTIREQNEAQILNQIIKHREISRAELSKITSLNKASVSSITNKLINDGFIIEKRIGEA 63 Query: 66 T-RGHSSGTWLIAPEG-DWTLCLNVTPTSIECQVANACLSPKGEFEYLQI--DAPTPQAL 121 T RG + +++ I+ +A+ + + + Q L Sbjct: 64 TNRGRKPIMLTFNGSSSALVIAIDLGYNYIDGALASLDGKEIHRVQLIDTYVNKKNVQDL 123 Query: 122 LSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + ++ + + +A+ GQV +S + + + +L ++ Sbjct: 124 IHKVFNQLTSDCPHTHYGIVGMTIALQGQVLNNKIISTSYNDLA---EINLVEMLNQEYN 180 Query: 182 IRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHT 241 V + N+ + AL E +S + I++ GIG V N ++ G+ +GQ+GHT Sbjct: 181 FPVFLQNEANLSALGEYTF-SSDIENLASISLHSGIGVGLVKNGKLDVGNKGYAGQLGHT 239 Query: 242 IVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSG 301 I+ P+G C CG +GCLE S + + S + + K+ + + + + Sbjct: 240 ILFPNGRKCTCGNHGCLEKYCSTQVIYHEI---------SKEKNLNKINSDVVSILYNNK 290 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 E + +++ A + + + N + + + + +N I R Sbjct: 291 ESKVVKMIEQYAYYLSIGVNNAIMLYAPELVIFNSPLTKKIPDIINIIQRNLNNQ----- 345 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 K + + + G L ++ L Sbjct: 346 ---FTKDVLVINSPIEWNPVISGAISLSIQKFLN 376 >UniRef50_A3TGR1 Transcriptional regulator, Rok family protein n=1 Tax=Janibacter sp. HTCC2649 RepID=A3TGR1_9MICO Length = 421 Score = 302 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 76/400 (19%), Positives = 144/400 (36%), Gaps = 17/400 (4%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD-ES 64 + Q+R N +IL L +++ LA +S S+++ +L V + + Sbjct: 23 DQAQMRAANMGLILRQLQLHGGRSRAGLATETGLSKATTSSLIADLAERGLVREGEIHRA 82 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQI-DAPTPQALLS 123 + G T + L L ++ + + + E + +L Sbjct: 83 GSVGRPGLTVNLDGRRVAGLGLEISIDYVAVTAVDLTGNVIRESITPMDVPELAVEVVLD 142 Query: 124 EIEKCWHRHRKLWPDH---TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKL 180 + R + + +A G +D G+ + P W V + L E++ Sbjct: 143 RVAGIAQRMLESLRSAGHIVVGFTVAPPGVIDYDAGIVRFAPNLGWR-SVALAAGLSERI 201 Query: 181 G--IR-VMVDNDCVMLALAEK-WQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSG 236 G + ++ND + A+AE +S+ +D ++ + G+G+ + ++ RG SG Sbjct: 202 GPECPEIHLENDAKLAAVAEYGAYADSEVQDLVYLSGEVGVGAGIIAEGRLVRGWSGFSG 261 Query: 237 QIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 ++GH + P + C CGR GC E V L + A S + ++L L Sbjct: 262 EVGHLALGPSELECSCGRRGCWELVVGLHHFLRLAAPVGDVVHDSRRSMDDRL--EILRE 319 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 SG+ + A + L +++LN +I L G FGE L + Sbjct: 320 RAASGDERTLEALAAIARDLIRGLSVLVDVLNPRRIVLGGYFAPFGEQLLAPVKSALDER 379 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 D + + L + G +EA Sbjct: 380 RMD-----AGSEVVVAVSALGLSAASRGGALAALEAVFED 414 >UniRef50_B0MNG8 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0MNG8_9FIRM Length = 316 Score = 302 bits (774), Expect = 2e-80, Method: Composition-based stats. Identities = 66/316 (20%), Positives = 128/316 (40%), Gaps = 12/316 (3%) Query: 81 DWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHR---HRKLWP 137 + + +++ T+I+ V + + A +++L+ I + Sbjct: 2 KYYIGVDIGGTNIKAGVVDENAQLVSKISLKTNAADGYKSVLAVIIDAVEQAVQLSGEDI 61 Query: 138 DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAE 197 D + + G +D G W V + L E G R++++ND + A E Sbjct: 62 DRIKTIGVGCPGTMDNENGTVLYSNNLHWEN-VPLAKDLAEYFGKRIILENDANVAAYGE 120 Query: 198 KWQNNSQERDF-CVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYG 256 ++ V+ + G+G+ +IN +IY GS G+IGHT++ DG C CGR G Sbjct: 121 YLAGAAKGAKNAVVLTLGTGVGAGIIINGEIYSGSNNAGGEIGHTVIEVDGAPCTCGRNG 180 Query: 257 CLETVASLSALKKQARVWLKSQPVSTQLD----PEKLTTAQLIAAWQSGEPWITSWVDRS 312 C E +S + L + R ++ P + K++ A + G+P VD+ Sbjct: 181 CFEAYSSATGLVRMTREMIEKYPSGRLHEMVDRDGKISARTAFNAAKLGDPEGREVVDKY 240 Query: 313 ANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIG 372 + + N +N+ + + + G C G+N L + + ++ + K T+I Sbjct: 241 IKYLACGITNVINVFQPDILCIGGGVCNEGDNLLIPLKALIAKQIYSKN---NAKNTEIV 297 Query: 373 FGQLSRAQQVLGIGYL 388 L+ ++G L Sbjct: 298 ICTLANEAGMIGSAML 313 >UniRef50_A4BCC4 Probable transcriptional regulator n=1 Tax=Reinekea blandensis MED297 RepID=A4BCC4_9GAMM Length = 394 Score = 301 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 89/400 (22%), Positives = 157/400 (39%), Gaps = 14/400 (3%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVN- 59 M+ + +QIR NK I+ L + L + ++S V+ I EL+ E R++ Sbjct: 1 MKKT-DTEQIRLANKKQIIHYLRVHGPIARVDLGQALKLSPATVTAITSELQQEARLIEH 59 Query: 60 --IDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQI-DAP 116 +++ TRG +AP+ L L ++ ++ + N E A Sbjct: 60 PATTEKTNTRGRPRVLIDLAPDAFHVLGLKLSINELKMHLGNHKGQVSDEMVIDLDTRAL 119 Query: 117 TPQALLSEIEKCWHRHRKLWPD--HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKY 174 + + L I R P L +A+ G V+ + G P V +K+ Sbjct: 120 SEEGLFDAIASAVRRFNASVPAHKRPKALGIAVQGVVNGLNGEIIWSPALAVR-KVPLKH 178 Query: 175 LLEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLY 233 LE+++ + V + ND L +A + Q Q DF VI + YGIG VIN ++Y G Sbjct: 179 ELEQRIQLPVTIANDANCLTMAIRHQRRYQSLTDFAVIMLGYGIGMGMVINGELYLGHHG 238 Query: 234 GSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQ 293 + + GH+ P+G C CG+ GC+E AL + A ++ E + Sbjct: 239 AAAEFGHSKYYPEGAQCLCGKRGCIEAYVGDYALYRDASALFPLSWDNSLHPTED-SMQV 297 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT 353 L+ +S + R+ +G + N + +L++ +I + G ++ Sbjct: 298 LVNKAESDSKELRDLFQRAGRVLGHGISNLIALLSLEKIIISGPGSRAYHLMEAGLMTNL 357 Query: 354 GFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 + + T I + GI L +EA Sbjct: 358 EDSLVSD----LIAETTIEHAAWDEDMTIKGIVVLALEAI 393 >UniRef50_C6CR95 ROK family protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CR95_PAESJ Length = 397 Score = 301 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 74/389 (19%), Positives = 144/389 (37%), Gaps = 13/389 (3%) Query: 14 NKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGT 73 +K +I + + K+ L I+ ++ +L ++ E ++ G Sbjct: 11 HKQLIYDYIANLGPIAKAELLEAHDITSSTMTRLLDDMAKEGLILVTGLGPSKGGRKPLL 70 Query: 74 WLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHR 133 + I P+ + L ++ + + + ++ K + + TP+ L++ Sbjct: 71 YQINPDYGYIFGLEISRFTSTLGLFDLNMNQKSVVRWRMDETMTPERLVAHTVSLMLAFM 130 Query: 134 K---LWPDHTINLALAIHGQVDPVTGVSQTMPQAP--WTTPVEVKYLLEEKLGIRVMVDN 188 K + + L + G +D +GV P V + L EE G+ +++N Sbjct: 131 KDHAISQSRILGLGIGAVGPLDRSSGVIVNPQYFPAKGWQQVPICALFEEAAGLPTLLEN 190 Query: 189 DCVMLALAEKW-QNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDG 247 + E W ++ + S+ + + +I G + G IG I++ DG Sbjct: 191 GANTALVGEHWSIRQENVEHALYVSAGISLRSAMMSHGRIVYGKVDMEGSIGQMIIDVDG 250 Query: 248 VV-CDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLD--PEKLTTAQLIAAWQSGEPW 304 + G YG LET AS+ AL++Q R LK + PEK+ + A +G+P+ Sbjct: 251 PRLEESGNYGSLETFASVQALERQVRTRLKVGGSLLLNNVVPEKVNLDTITAGLNAGDPF 310 Query: 305 ITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGP 364 I +SA+ G+ L N +N + I L G + + + + Sbjct: 311 IREMFRQSASYFGVGLANLINTFHPELIILGGALISASPMYYRVATEVAVKKTYYGEAYI 370 Query: 365 SVKATQIGFGQLSRAQQVLGIGYLYVEAQ 393 Q G+L V G + Sbjct: 371 P----QFSMGRLKEDAVVTGAALMVRSRM 395 >UniRef50_C7Q736 ROK family protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q736_CATAD Length = 402 Score = 301 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 85/406 (20%), Positives = 160/406 (39%), Gaps = 25/406 (6%) Query: 2 RACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNID 61 RA + +R HN+ +L LY + N++ LAR + +S +SN++ +L + V Sbjct: 4 RAQKTTRDLRWHNRADLLTRLYLGEATNRNDLARASGLSAATISNVVSDLIGDGLVGENG 63 Query: 62 DESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYL-QIDAPTPQA 120 +S G + P + +++ T I + + L P E I PQ Sbjct: 64 SQSSAGGRPRSLLRVLPAFGHVVGIDIGETEIRVGLFDWTLHPVAEEARPVDIPRVPPQQ 123 Query: 121 LLSEI---EKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLE 177 + ++ + D + + + + G G P W + V + LL Sbjct: 124 VADQVLSEIAAVTARAGIAVDDLLGVGIGVPG----AGGSVIHAPTLGW-SAVPLAGLLR 178 Query: 178 EKLGIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGS- 235 ++LG +DN + L AE W+ ++ + + + G G + + G + Sbjct: 179 DRLGFTPDIDNGAMALGQAEAWRGAARGAERAVALLLGTGAGGAL----SLAAGPGGRAR 234 Query: 236 ---GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTA 292 + GHT+V+ +G C CG GCLET A+ + S P++ +L+ Sbjct: 235 SFTMEWGHTVVDLEGPHCRCGARGCLETYIGAEAILARYAATPGSTPLAEDGVEAQLS-E 293 Query: 293 QLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFG--ENWLNTII 350 + A Q E +D +A +G+ + N +N++ +++ + G + A L + Sbjct: 294 LVARASQHHESAALEVLDATATYLGVGISNLINLVAPDRVIISGWAGALLCDAALLPAVR 353 Query: 351 RQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 R + + T+I G+L + LG L V L Sbjct: 354 RVVRRHAL----PYLQEFTRIEPGELGPSATALGAATLPVARLLAD 395 >UniRef50_C2FZL1 ROK family transcriptional repressor protein n=6 Tax=Sphingobacterium spiritivorum RepID=C2FZL1_9SPHI Length = 403 Score = 301 bits (772), Expect = 3e-80, Method: Composition-based stats. Identities = 76/377 (20%), Positives = 150/377 (39%), Gaps = 17/377 (4%) Query: 29 NKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIAPE-GDWTLCLN 87 + L+ L SIP++S I+ EL +K ++ T G + + + + + L + Sbjct: 25 TIAELSGLTNKSIPSISKIVNELLEDKLLIEDGLAPSTGGRRAIHYALNAKLNCYILTVA 84 Query: 88 VTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRK---LWPDHTINLA 144 + V + ++ P+ S I + L D+ + + Sbjct: 85 IDQHYTSVIVYDLHNKEVTPVHTIENHLDHPEEAFSNIVSLINELLTKHHLSADNILGIG 144 Query: 145 LAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQ 204 +++ G VD V+G + + +K E I ++ND +A+AE+ ++ Sbjct: 145 VSMPGFVDNVSGTNGS---FKDFQLFNIKKEFERVFAIPTFIENDSTAIAIAEQNFGKAK 201 Query: 205 E-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVAS 263 E +INV +G+G +++ +++RG +G+ H ++ +C CG+ GCLE AS Sbjct: 202 EISHALIINVGWGVGLGIIVDNKLFRGFSGYAGEFSHIPLSKSKKMCSCGKTGCLEVEAS 261 Query: 264 LSALKKQARVWLKSQPVSTQLDPEKLT----TAQLIAAWQSGEPWITSWVDRSANAIGLS 319 LSA L + S + LI A G+ S +++SA +G Sbjct: 262 LSAAVAHLEERLATGEKSVIQYEDSQNQLQKAQLLINAALGGDQLAISALNKSAYMLGKG 321 Query: 320 LYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRA 379 + ++I+N +I + GR G+ + I + T + + Sbjct: 322 IATLIHIMNPQKIIISGRGAEAGKILMPQIQTAIHEFCIPK----ISNKTVLEISDMKN- 376 Query: 380 QQVLGIGYLYVEAQLRQ 396 Q++G + E L + Sbjct: 377 AQLIGTASIVFEYSLTK 393 >UniRef50_B6A233 ROK family protein n=6 Tax=Rhizobiales RepID=B6A233_RHILW Length = 321 Score = 301 bits (771), Expect = 4e-80, Method: Composition-based stats. Identities = 57/305 (18%), Positives = 121/305 (39%), Gaps = 8/305 (2%) Query: 82 WTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLW-PDHT 140 + +++ T + + + P +L++I R P Sbjct: 4 VAIGIDLGGTQVRAALVDEHGRILTRLAEPTDALAGPDRVLAQICGLADRLLAASKPASV 63 Query: 141 INLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKWQ 200 + + ++ G +D VTGV+ +P P +K L+++ V ++ND + A+ E Sbjct: 64 VGVGVSAPGPLDTVTGVATDIPTLPGFVDFPLKAELQKRFAFPVDLENDAIAAAVGEWQF 123 Query: 201 NNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLE 259 + + + V GIG + + ++ RG + +GH V P+G +C CG GC E Sbjct: 124 GIGKGLDNLVYVTVSTGIGGGVISDGRVVRGRKGMAAHVGHMSVVPNGELCPCGNRGCFE 183 Query: 260 TVASLSALKKQAR-VWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGL 318 S A ++A+ ++S+ + + + + + AA ++G+ VD A +G Sbjct: 184 AYGSGPAFARRAQMRAMESRDTTLGSNGGAIDSRSVFAAARNGDRLANQLVDEEAEILGR 243 Query: 319 SLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSR 378 N ++I + + I + G + I + P+ K ++ L + Sbjct: 244 GFTNLIHIFSPDIIVMGGGLSHEFDRLQPGIQAYI-----SQWAMPAFKDVKVVLAALDQ 298 Query: 379 AQQVL 383 ++ Sbjct: 299 NSGLV 303 >UniRef50_B0K0J6 ROK family protein n=8 Tax=Thermoanaerobacter RepID=B0K0J6_THEPX Length = 381 Score = 301 bits (771), Expect = 4e-80, Method: Composition-based stats. Identities = 74/394 (18%), Positives = 146/394 (37%), Gaps = 32/394 (8%) Query: 1 MR--ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVV 58 M+ + I++ NK +L+++ + + ++ ++++ ++S +S I+ EL E V+ Sbjct: 1 MKDYTKGTSGLIKNINKANVLDVIKKMQPISRIEVSKVLKMSKSTISAIVDELIEEGLVI 60 Query: 59 NIDDES-QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQ-IDAP 116 T G P+ + + ++V T+ + N + ++ I Sbjct: 61 ENGYGEKGTVGRKPIQLSFNPDARFVIGISVESTNSIGILTNLEGKILKKIKWETGIKEQ 120 Query: 117 TPQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLL 176 ++ I++ + + D G+ P W+ ++K L Sbjct: 121 AFNGIVKGIKELAEEDKNIIGIGIGLPG-----ITDIQKGIV-DAPGLKWSN-FDLKKRL 173 Query: 177 EEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 E + VDN AL E+W +E +F +IN+ GIGS +N + RG+ Y + Sbjct: 174 SEIFNYNIYVDNSVNYAALGERWIGCCREIENFVLINIGNGIGSGIYVNGTLLRGNSYAA 233 Query: 236 GQIGHTIVNPDG--VVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQ 293 G++G+ + D V YG E ASLSAL + L P T Sbjct: 234 GEVGYMAIGEDAFERVYSYEDYGYFERKASLSALVESVSKSL----------PYVKTMEG 283 Query: 294 LIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQT 353 ++ ++ P V + + + + N ++ILN I + G + + + + Sbjct: 284 VVKEYKKQNPACVQAVSQFIKNLSMGIANIVSILNPEVIIIGGDILNYEIDIRQELKEKV 343 Query: 354 GFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGY 387 I QL +G Sbjct: 344 KRIVPF--------DFDIKVAQLGEDASAIGAVA 369 >UniRef50_C3QC45 ROK family transcriptional repressor protein n=19 Tax=Bacteria RepID=C3QC45_9BACE Length = 402 Score = 301 bits (771), Expect = 4e-80, Method: Composition-based stats. Identities = 79/410 (19%), Positives = 158/410 (38%), Gaps = 26/410 (6%) Query: 5 INNQQIRHH---------NKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEK 55 +N Q ++ K +I +Y + L++ +S+P V+ + E+ + Sbjct: 1 MNQQFLKEIEKGSKSALVKKRIITHYIY-NGSSTIPDLSKELDLSVPTVTKFIGEMCDDG 59 Query: 56 RVVNIDDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDA 115 + + + G + + PE + L +++ ++ + N + Sbjct: 60 YINDYGKLETSGGRHPNLYGLNPESGYFLGVDIKRFAVNIGLINFKGDMVELKMNIPYKF 119 Query: 116 PTPQALLSEIEKCW---HRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEV 172 ++E+ K + + + +N+ + + G+V+P +G S + + Sbjct: 120 ENSIEGMNELCKHILNFIKKLTINKEKILNINVNVSGRVNPESGYSFSQFNFEER---PL 176 Query: 173 KYLLEEKLGIRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGS 231 +L EKLG +V +DND + E Q + +D +NV +G+G +I+ +IY G Sbjct: 177 ADVLSEKLGYKVTIDNDTRAMTYGEYMQGCVKGEKDIIFVNVSWGVGIGIIIDGKIYTGK 236 Query: 232 LYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQ-----LDP 286 SG+ GH + ++C CG+ GCLET AS SAL + ++S S + Sbjct: 237 SGFSGEFGHMSAYDNEIICHCGKKGCLETEASGSALHRILLERIQSGESSILSTRIATEE 296 Query: 287 EKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWL 346 +T ++IAA + V+ +G + +NI N + + G G+ Sbjct: 297 NPITLDEIIAAVNKEDLLCIEIVEEIGQKLGKQIAGLINIFNPELVIIGGTLSLTGDYIT 356 Query: 347 NTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 I + K + I +L ++G L Sbjct: 357 QPIKTAVRKYSLN----LVNKDSAIITSKLKDKAGIVGACMLARSRMFES 402 >UniRef50_A5N1R7 Predicted transcriptional regulator n=2 Tax=Clostridium kluyveri RepID=A5N1R7_CLOK5 Length = 402 Score = 301 bits (771), Expect = 4e-80, Method: Composition-based stats. Identities = 72/389 (18%), Positives = 150/389 (38%), Gaps = 10/389 (2%) Query: 15 KCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTW 74 + I LL + R +K+ ++ I + ++ +++ LE K +V T G + Sbjct: 15 EKKIFNLLQKNGRLSKNKISSRTDIKLTTLNYVMEPLEKSKMIVESCIGESTGGRRPILY 74 Query: 75 LIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRH-- 132 I + + ++++ + + N + + + D+ TP + ++ + +R Sbjct: 75 DININDFYIIGIDISILYTQVVITNLKMEILYKELFNMDDSYTPCETVKKVVEIINRAYA 134 Query: 133 -RKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPW--TTPVEVKYLLEEKLGIRVMVDND 189 L + + + G +D G+ + T V +K +LEEKL V+V+N Sbjct: 135 NLNLSHMKLLGIGVGSVGPLDIKNGIIKNPVDFFADKWTDVPIKKMLEEKLKHPVIVENG 194 Query: 190 CVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGV 248 +AE + + + N GI + + + + R GH ++ DG Sbjct: 195 ANAAVVAEYFYGVGRGIENIAFFNCGIGIRTGTISSGHLIRTINDEEEAFGHMTIDIDGE 254 Query: 249 VCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDP-EKLTTAQLIAAWQSGEPWITS 307 C CG YGCLE +++ A+ K +K + P E++ + A + G+ Sbjct: 255 KCKCGNYGCLECYSTIKAIIKNISKKIKKGRHTIINKPVEEIDYKDVCLAAEMGDELSID 314 Query: 308 WVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVK 367 + +A +G L N++ +L+ + L G + + ++ T N + Sbjct: 315 IITDAALILGSGLSNYIKLLSPKLVILTGPLIINSKLFYEVCVKSTLKNLNSTKGKSVIF 374 Query: 368 ATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 G S +G + +E L Sbjct: 375 N---RCGYFSGDAISIGASAMVIERCLES 400 >UniRef50_D2ATI4 ROK family protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2ATI4_STRRD Length = 457 Score = 300 bits (770), Expect = 5e-80, Method: Composition-based stats. Identities = 78/428 (18%), Positives = 137/428 (32%), Gaps = 39/428 (9%) Query: 3 ACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDD 62 + +R N ++L L ++++ +A + VSN++ EL + V + Sbjct: 16 QPAGHASLRRTNLSLVLRHLRDHGSSSRADIAEATGLHRATVSNLMAELLERRLVREVGI 75 Query: 63 E-SQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQID-----AP 116 E + T G + L L + + + E Sbjct: 76 EHAGTVGRPRRAVALDGAHVGVLGLEINVDYVAVHGTDLGGRVLVERRVGFDAMGSGTNH 135 Query: 117 TPQALLSEIEKCWHRHRKLWPD------------------------HTINLALAIHGQVD 152 + + L + + + +A+ G VD Sbjct: 136 SLRELGRVARQAIDELTRAGAGPSGLGPGDLAAAGASGIAAAGGGIRVAGIGVAVPGLVD 195 Query: 153 PVTGVSQTMPQAPWTTPVEVKYLLEEKLG---IRVMVDNDCVMLALAEKWQN-NSQERDF 208 GV P W V + L LG V VDND + ALAE + D Sbjct: 196 VGHGVVALAPNLGWRD-VSLASRLSVALGDVRAPVTVDNDANLAALAEYTSGVAAGTADM 254 Query: 209 CVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALK 268 + + G+G ++ ++ RG+ SG++GH V+P G C CGR GC ET L+AL Sbjct: 255 VYLTGEVGVGGGIIVGGRLLRGADGFSGEVGHMPVDPGGSRCGCGRSGCWETKVGLAALV 314 Query: 269 KQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILN 328 + A +T + + A++ G+P + + V +GL +N+ N Sbjct: 315 RMATPDQAYGMGTTPVPDPEERVAEIARGLAGGDPLMLAAVAEVGRWLGLGGSILVNLFN 374 Query: 329 INQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYL 388 I + G L + + L LG + Sbjct: 375 PRVIVVGGYFATLARWLLPFAQAELEDLVVAG----PAARCRFVASDLGFGAASLGAANV 430 Query: 389 YVEAQLRQ 396 + + Sbjct: 431 VINQLIDD 438 >UniRef50_A4BDK2 N-acetylglucosamine repressor n=1 Tax=Reinekea blandensis MED297 RepID=A4BDK2_9GAMM Length = 402 Score = 300 bits (770), Expect = 6e-80, Method: Composition-based stats. Identities = 69/395 (17%), Positives = 149/395 (37%), Gaps = 15/395 (3%) Query: 5 INNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDES 64 N ++ +N + ++ +++ L ++ ++ +V+ + + L + V + + Sbjct: 8 ANLDSVKQYNLMRLFRIIVEYGLISRTQLVEVSDLAAGSVTKLTRLLIEQNLVHEVAQQQ 67 Query: 65 QTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE 124 RG + + L + + + + + E ++A +++ Sbjct: 68 SERGRKAVLLAPKTDDIQILAARADRQHLYVGLCDLSGNLL-QREAEPLNADNEDEFVAQ 126 Query: 125 IEKCWHRHRKLWPDH---TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLG 181 + + D + + + + G VD G+ MP P + + ++ + L Sbjct: 127 LTRSLRHFLTTHADQVRNVVGIGVTMPGLVDANRGIVNFMPHVP-VHELPLADIITDALE 185 Query: 182 IRVMVDNDCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGH 240 + +++ +ALAEK S R+ I V G+G+ ++N ++Y G+ G G+IGH Sbjct: 186 MPCYINSFASAMALAEKQIGASFHARNSVFIEVHNGVGAGIILNNELYSGT--GVGEIGH 243 Query: 241 TIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQS 300 ++ G C CG YGCLET S SA+ + Q V T+ T ++ A Sbjct: 244 IQIDRLGKPCICGNYGCLETEVSDSAIVEHFNQRQALQSVDTE---RAETIQDVLQAAGE 300 Query: 301 GEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDR 360 + + +A IG ++ N+ + I L G + +Q Sbjct: 301 LNENALAVLKEAAAHIGTAMATVANLFRPDSIILAGAVTQAWSLIHPVLEQQLKTKSLQ- 359 Query: 361 DEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 +K ++ + + G L + L Sbjct: 360 --VRGLKPIELLRSDIYDSPWYSG-YALVRQGLLE 391 >UniRef50_A8UDG8 Xylose repressor protein n=2 Tax=Firmicutes RepID=A8UDG8_9LACT Length = 395 Score = 300 bits (769), Expect = 6e-80, Method: Composition-based stats. Identities = 76/405 (18%), Positives = 168/405 (41%), Gaps = 23/405 (5%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ +++ + IL+++Y + ++ +++ I+ VS+I+ L E+ + Sbjct: 1 MKITKRQKEL----QTKILDIIYTKGPLSRIDISQATGITPATVSDIVGNLIVEQLIHET 56 Query: 61 DDESQ---TRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPT 117 + G + I+P + + + ++ + + + E + L D T Sbjct: 57 GEIVSDTNKSGRKKISLDISPNHSFYIGVELSEKFFAYCLIDNKQN-LFEKKILTNDPST 115 Query: 118 PQALLSE---IEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKY 174 P+ L+ + + H ++ +A+ G D + T K Sbjct: 116 PERNLTASLFVTELHSFLLHCSNYHPQSIGIALPGHFDEENQSIL--TNNSFWTNFNFKQ 173 Query: 175 LLEEKLGIRVMVDNDCVMLALAEKWQNN-SQERDFCVINVDYGIGSSFVINEQIYRGSLY 233 LL + + V N+ + L+E+ + S + +F ++V G+ S + +Y + Sbjct: 174 LLS-TINLPVYFKNNVHCMTLSERLFGHDSTDNNFTFVHVGRGMFCSSIYQSNLYGDNNN 232 Query: 234 GSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQ----LDPEKL 289 G+IGH +V+PDG +C+CG+ GCL+T AS S + K++++ + D L Sbjct: 233 LVGEIGHIVVHPDGELCECGKRGCLQTYASESWIIKKSQILFDKSDSTYLRQLATDRAHL 292 Query: 290 TTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTI 349 T ++ A++ G+ + + + + + ++L N +++ +++ ++G + + L+ I Sbjct: 293 TIEVILQAYKLGDEGVINILHNAIKYLSITLNNLSMMIDADKMIIHGELFSE-KQLLDLI 351 Query: 350 IRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQL 394 N + K T I S L L V QL Sbjct: 352 KDYLEKNI---ALLATKKKTLIEIKNYSAINGALSAAGLCVAKQL 393 >UniRef50_B8DZP0 ROK family protein n=2 Tax=Dictyoglomus RepID=B8DZP0_DICTD Length = 387 Score = 300 bits (769), Expect = 7e-80, Method: Composition-based stats. Identities = 74/406 (18%), Positives = 154/406 (37%), Gaps = 43/406 (10%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M+ Q I NK IL+LL + +++ +AR +S P VS ++EL E V+ + Sbjct: 1 MKIG-RPQLIDEVNKGQILKLLREEGPISRAEIARRLGLSRPTVSTHIKELLKEGLVIEV 59 Query: 61 DDESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPT--- 117 ++G + L ++ + + +++ C E D Sbjct: 60 GKGKGSKGRKGILLKYNARHGYFLAGDIEGSIMRFALSDLCGEILYEKVLSLNDLRQKNM 119 Query: 118 --PQALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 P+ + I K + + + + +AL I G + G P P ++ L Sbjct: 120 MKPENFID-IIKQFLKENSVEEKNIRVIALGIAGII--EEGKLIFAPNLPEWNHAPLQNL 176 Query: 176 LEEKLG-IRVMVDNDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLY 233 ++E +V+++ND + E W+ + ++ +++ GIG+ VI+ ++Y GS Sbjct: 177 IKEAFPETQVILENDVNTAVMGEMWKGAGKGLKNIVYLSLSTGIGAGIVIDGKLYEGSNK 236 Query: 234 GSGQIGHTIVNPDGVVCDCGRY--------GCLETVASLSALKKQARVWLKSQPVSTQLD 285 +G+I + +V+ + G LE VAS + + ++A+ + + + Sbjct: 237 FAGEISYMVVDSHHE-----NFPGVEYTPLGALEWVASGARIIEKAKSFDSKYTLLEIIF 291 Query: 286 PEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENW 345 + ++ +DR +G ++ N +++L+ I + G F Sbjct: 292 DDYNKVEEI-----------KVLIDRIGEYLGKAIVNMVSVLDPEVIIVGGIVGKFLNIL 340 Query: 346 LNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVE 391 + I + +I L V G Y +E Sbjct: 341 MRKIKPTIEYYL--------PVPVKIIPSALYPKTVVYGAIYRALE 378 >UniRef50_C6WP29 ROK family protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WP29_ACTMD Length = 410 Score = 300 bits (769), Expect = 7e-80, Method: Composition-based stats. Identities = 80/393 (20%), Positives = 141/393 (35%), Gaps = 20/393 (5%) Query: 8 QQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 +R N +L + A + LAR +S VS ++ L+ E VV +D+ R Sbjct: 21 SSVRALNTRRVLRAVMVL-PATQVQLARRTGLSQATVSGVVGRLQQEG-VVEVDEGEGER 78 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQV--ANACLSPKGEFEYLQIDAPTPQALLSEI 125 G +AP + + V + + + + + +A + E Sbjct: 79 GKR---VRVAPMRGAAVGIEVGHDRLIVALRRIDNE-EVLHQGGNRLVVGRDDRAWVGEA 134 Query: 126 EKCWHRHR---KLWPDHTINLALAIHGQVDPVTGVSQTMPQ-APWTTPVEVKYLLEEKL- 180 + + +++ L + VDP G EE Sbjct: 135 VRLIDDLLESTGMVAADVVSIGLGLPAAVDPRRGRVNQSVTAMKEDLRGNPATWFEEHYP 194 Query: 181 GIRVMVDNDCVMLALAEKWQNNSQERD-FCVINVDYGIGSSFVINEQIYRGSLYGSGQIG 239 G+ V+VDN+ A E ++ + + GIG+ VI ++RG +G++G Sbjct: 195 GVPVVVDNEANFAAYGEYTYGVGRDAEVLLFVKASTGIGAGLVIGGTVFRGRHGFAGEVG 254 Query: 240 HTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQ 299 H ++P+G+VC CG GCLET+ S L ++ R + V +T A LI + Sbjct: 255 HLTMDPNGLVCRCGNRGCLETLVSGPRLVEEVRQAYRGHRVDL-----PMTLAGLIERAR 309 Query: 300 SGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFD 359 + +P + + IGL+L NI+N + + L G G+ R N Sbjct: 310 AHDPVCVRVLQDAGRNIGLALARVCNIVNPDLVVLGGELGEAGDLVRKHAARDLERNVLT 369 Query: 360 RDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEA 392 + +L G + Sbjct: 370 GMLE-HEHPVVVRVSELGLLAGPRGALAFALSN 401 >UniRef50_C7MQ22 Transcriptional regulator/sugar kinase n=1 Tax=Saccharomonospora viridis DSM 43017 RepID=C7MQ22_SACVD Length = 384 Score = 299 bits (768), Expect = 1e-79, Method: Composition-based stats. Identities = 68/380 (17%), Positives = 128/380 (33%), Gaps = 19/380 (5%) Query: 18 ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLIA 77 +L +L + L +S + L L + + + G + + Sbjct: 12 VLGVLRAAGPLTRQELQERVGVSRATMVERLDVLRRAGLLRRVGHRESSGGRRAELLAVN 71 Query: 78 PEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWP 137 G L ++ + V + + + +PQ LS + + Sbjct: 72 DTGHTALVADLGQSHATLAVVDLRGTVFARAGHELSPHDSPQETLSRLVETGKSLITDSG 131 Query: 138 --DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLAL 195 + + L++ GQ+D GV+ V ++ +E + V+++ND LA+ Sbjct: 132 KAETLCAVGLSVPGQIDHDEGVTAAPWSMREWDGVRLRDPFKEAFDVPVLLENDANALAM 191 Query: 196 AEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRY 255 AE + E + V GIG+ VI + +RG +G+IGH + C CGR Sbjct: 192 AEYYAMGRPEATMVGVKVGTGIGAGVVIAGRPHRGETGAAGEIGHMRIEGGDRRCVCGRR 251 Query: 256 GCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSANA 315 GC+ AS AL + R + ++ + G V + Sbjct: 252 GCVAAEASGRALVRMLRSKGVR------------SVNDVVRWVEEGRAEAVDAVSAAGRL 299 Query: 316 IGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQ 375 +G L + I+N + L G L + +++ I Q Sbjct: 300 VGTVLATVVTIVNPRYVRLGGAIG-----VLPPFVEALRRTVEANAHTSALRKLDIAASQ 354 Query: 376 LSRAQQVLGIGYLYVEAQLR 395 L ++G+ L + L Sbjct: 355 LGDRGVLVGMSGLVADEMLS 374 >UniRef50_A5G397 ROK family protein n=7 Tax=Geobacter RepID=A5G397_GEOUR Length = 328 Score = 299 bits (767), Expect = 1e-79, Method: Composition-based stats. Identities = 56/321 (17%), Positives = 119/321 (37%), Gaps = 11/321 (3%) Query: 83 TLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSE---IEKCWHRHRKLWPDH 139 + ++V T++ + + + L + Sbjct: 10 CIGIDVGGTNLRFALVDELGKVLFRERRSTEIHQGKEQFLKRFFSVIASLRTWADSSGKE 69 Query: 140 TINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAEKW 199 + + + G + G+ + + ++ L+ G+ +V ND A EK Sbjct: 70 IVAIGAGVPGLI-SNDGIIYSSVNLLPLEGLNLRELITAAAGLPAIVVNDANASAWGEKC 128 Query: 200 QNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYGCL 258 + F ++ + G+GS V+N++++ G +G+ GH V PDG C CG +GCL Sbjct: 129 YGAGRSMNSFLMLTLGTGVGSGLVLNDKLWTGCDGVAGEFGHVTVEPDGKPCPCGNHGCL 188 Query: 259 ETVASLSALKKQARVWLKSQPVSTQLDPEK--LTTAQLIAAWQSGEPWITSWVDRSANAI 316 E AS +AL +A +++ + L L A G+ + + + + Sbjct: 189 EQYASATALVAEAGEAIQAGGGGALANVPASMLNAEVLADAAHGGDALAKAIFENAGRYL 248 Query: 317 GLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQL 376 G++ +N+LN+ I L G A + + + R+ R + ++ +L Sbjct: 249 GIASAAAVNLLNLEGIILGGGVAASYDLIVEPMRREI----LARAFAIPARRVRLVRAEL 304 Query: 377 SRAQQVLGIGYLYVEAQLRQI 397 +LG + + + + Sbjct: 305 EDDAGILGAAAMALASVKSDL 325 >UniRef50_C0CHG9 Putative uncharacterized protein n=1 Tax=Blautia hydrogenotrophica DSM 10507 RepID=C0CHG9_9FIRM Length = 322 Score = 299 bits (766), Expect = 1e-79, Method: Composition-based stats. Identities = 62/325 (19%), Positives = 128/325 (39%), Gaps = 17/325 (5%) Query: 80 GDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDA--PTPQALLSE---IEKCWHRHRK 134 + L +++ T + ++ Y+ +A+ + + Sbjct: 2 SKYYLIMDIGGTKTTGALFTEDGKIVDDYTYVSKSPTFEGKEAVYQNTRGVLDHIVERFQ 61 Query: 135 LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLA 194 + + + + G +D G+ P W + L + V +DND + A Sbjct: 62 VDLKDVLGIGVGCPGPLDSRKGIIIHAPLMRWKN-FPLVERLSHDFQLPVALDNDGNLGA 120 Query: 195 LAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCG 253 LAE+ ++ + + V G G VIN +IY G G+G++GH ++P+G+ C CG Sbjct: 121 LAEQRCGVAKGLDNVMYMTVSTGCGGGLVINGEIYHGKHDGAGEVGHMSIDPEGLDCPCG 180 Query: 254 RYGCLETVASLSALKKQARVWLKSQPVS-----TQLDPEKLTTAQLIAAWQSGEPWITSW 308 GC E AS +A+ ++ R + + S Q DP+K+ L A + G+ + ++ Sbjct: 181 GKGCFELYASGTAMNRRMREDMAAGKKSMVFELAQHDPKKIEGRLLTEAAEKGDTYALAF 240 Query: 309 VDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKA 368 + A +G+ + N N+ + + L G + + ++R V+ Sbjct: 241 FKQQAYYLGVGISNLFNLYDPEVLVLGGGVTKAKAFYHDEMMRVIRSRCLQ-----PVED 295 Query: 369 TQIGFGQLSRAQQVLGIGYLYVEAQ 393 I + ++ + G +L + Sbjct: 296 DSIRYSVMNDRVVLYGAYHLIKDKL 320 >UniRef50_D2B0X7 ROK family protein n=2 Tax=Actinomycetales RepID=D2B0X7_STRRD Length = 391 Score = 298 bits (765), Expect = 2e-79, Method: Composition-based stats. Identities = 81/413 (19%), Positives = 145/413 (35%), Gaps = 56/413 (13%) Query: 1 MRACINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNI 60 M + + +R N V+L + R ++ LA + ++ VS ++ +L V Sbjct: 1 MTQAVRHDSMRARNLGVVLGEVRRSGPITRAALAEITGLTKTTVSKMVGDLLGAGMVTEA 60 Query: 61 DD-ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSP-KGEFEYLQIDAPTP 118 RG ++ L L + + V + LS + + A +P Sbjct: 61 GALRDGERGRPGTAVSLSGHRVAALGLEINVDYLSACVVDLTLSVRLRRTQAVDNRAASP 120 Query: 119 QALLSEIEKCWHRHRKLWPDHTINLA---LAIHGQVDPVTGVSQTMPQAPWTTPVEVKYL 175 L+ +++ HR + +A LA+ G VD G+ P W V V L Sbjct: 121 VETLAHLQELAHRAVDEARSEGLAIAGSTLAVPGPVD--GGLLHAAPNLGWHD-VRVGDL 177 Query: 176 LEEKLGIRVMVDNDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQI-------- 227 L V V+N+ + AL E W + DF ++ +I Sbjct: 178 L----DFPVAVENEANLAALGELWFGSG-PSDFLHVS------------GEIGVGAGLVV 220 Query: 228 ----YRGSLYGSGQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQ 283 +RG+ +G++GH IV+PDG C CG GCLE A AL + A + Sbjct: 221 GGALFRGARGLAGELGHVIVSPDGPTCRCGGRGCLEQYAGQEALLRAAGLDG-------- 272 Query: 284 LDPEKLTTAQLIAAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGE 343 +L+ Q+G P +R+ A+G++L + +++++ + L G Sbjct: 273 -------VPELVERLQAGTPGALRACERAGQALGVALTSAVHLMDPGTVVLGGIFAPLFP 325 Query: 344 NWLNTIIRQTGFNPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 ++ +L LG + + Sbjct: 326 WIHGPARETMTARLARMRHAVP----ELTVSRLGGDAASLGAAGQVIHRIIAD 374 >UniRef50_D1AWX4 ROK family protein n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AWX4_STRM9 Length = 388 Score = 298 bits (764), Expect = 3e-79, Method: Composition-based stats. Identities = 87/389 (22%), Positives = 159/389 (40%), Gaps = 11/389 (2%) Query: 10 IRHHNKCV--ILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTR 67 ++ N+ ILEL+ + + L+ IS A+S +++L E V+ D S Sbjct: 1 MKRLNETEYEILELISKNHCVTRMDLSLKLNISPAAISKTMKKLIEENLVLEDDTLSSKG 60 Query: 68 GHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEK 127 G I E + +N P I V+ S + + + + ++ Sbjct: 61 GRPRKILKINSEYKKVIGINFGPGFIYISVSKIDGSIIETRKKKFQFKVSQKLITLLTDE 120 Query: 128 CWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVD 187 + + + + LA++G V+ G S P W+ ++++ LE K + V+VD Sbjct: 121 LDLLFERYNKNEILGIGLAVNGIVNTRDGSSIFSPHLKWSN-IKLREYLENKFNLPVIVD 179 Query: 188 NDCVMLALAEKWQNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNP-D 246 ND + AE ++ + + I + GIGSS +IN +I+ G + +G+IGH I+NP Sbjct: 180 NDVRAMLKAEIYK-VKKLSNVMYIYIRDGIGSSIMINNKIFEGVNFCTGEIGHFIINPTS 238 Query: 247 GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWIT 306 C CG+YGCLE S ++ + L+ Q +L+ +T ++ GE Sbjct: 239 NSRCQCGKYGCLEAEYSSKMIRNKVIWELEKQG--IELENNYITYKEIFEKASFGEEPYK 296 Query: 307 SWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSV 366 + V ++ IG ++ N LN+L+I I + G +L + Sbjct: 297 AIVKEASIKIGSTVGNILNVLDIGNIIIAGDILHAKNIFLKNFEKGIDL----MKTHSFE 352 Query: 367 KATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 I + + G +L + Sbjct: 353 SMVNIYTTEFGDDVEKYGAIFLVIMNLFS 381 >UniRef50_D1AY92 Glucokinase, ROK family n=4 Tax=Bacteria RepID=D1AY92_STRM9 Length = 317 Score = 298 bits (764), Expect = 3e-79, Method: Composition-based stats. Identities = 58/319 (18%), Positives = 123/319 (38%), Gaps = 12/319 (3%) Query: 81 DWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWH---RHRKLWP 137 + +++ T+ + + + + + + ++ C K+ Sbjct: 2 KYYGGIDLGGTNSKIGILDENGNIIYSTIVKTESNLGYKETIKKLSDCLKVGLDENKINY 61 Query: 138 DHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLALAE 197 D I+L + + G + V PW + + E +L V +DND ++ L E Sbjct: 62 DDFISLGMGVPGPTVNKSTVIMWA-NFPWPENLNLANEFENQLSKPVYIDNDVNIITLGE 120 Query: 198 KWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGRYG 256 W ++ ++ + + GIG + V+N +I G SG+IGH + G +C CG+ G Sbjct: 121 LWVGAAKGYKNVLGMAIGTGIGGAVVVNGEIISGKNGASGEIGHIPLEKKGRLCGCGKRG 180 Query: 257 CLETVASLSALKKQARVWLKSQPV---STQLDPEKLTTAQLIAAWQSGEPWITSWVDRSA 313 C E AS + +++ A+ L+ + + + G+ V+ +A Sbjct: 181 CFEAYASATGIERIAKDRLEVNKNNMLYNLTKDRDIEAKDVFECAKQGDKLSMDIVEETA 240 Query: 314 NAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGF 373 + + + L+IL+ + + + G GE + I + K +I Sbjct: 241 EYLAMGIGTALSILDSDIVVMGGGVALAGEFLTDKIKKYLPDYL----MTSIEKNVEIKI 296 Query: 374 GQLSRAQQVLGIGYLYVEA 392 +L + G YL +++ Sbjct: 297 AELGNNAGIYGAAYLAMQS 315 >UniRef50_D1Y8Z8 ROK family protein n=3 Tax=Propionibacterium acnes RepID=D1Y8Z8_PROAC Length = 403 Score = 298 bits (763), Expect = 4e-79, Method: Composition-based stats. Identities = 77/401 (19%), Positives = 146/401 (36%), Gaps = 22/401 (5%) Query: 4 CINNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVN-IDD 62 I++ +R N ++L L + +++ L+R +S +++N+ EL + V D Sbjct: 10 RIDHGTMRTINLALLLGALRSE-PISRAELSRRTHLSKASITNLAAELAARGLVREGSPD 68 Query: 63 ESQTRGHSSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTP-QAL 121 + T G + + L + + V + C + + A P + Sbjct: 69 RNGTVGRPGTMLTLEGARVCGVGLEINAEYLAVCVVDLCGTVLYDRAQPFDVASLPISDV 128 Query: 122 LSEIEKCWH---RHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEE 178 L E+ H + ++ G + G W V ++ L + Sbjct: 129 LDEVAGIMRDTLEQLHSARRHVAQVMVSAPGVIKQPAGTVHLASNLGWRD-VPLRSQLLQ 187 Query: 179 KLGIRV--MVDNDCVMLALAEKW-QNNSQERDFCVINVDYGIGSSFVINEQIYRGSLYGS 235 +L + V+ND + A+AE +S RD ++ D G+G+ + Q+ RG S Sbjct: 188 RLDADISLQVENDAKLAAVAEYRRYEDSDVRDLVYLSGDIGVGAGIIAAGQLMRGWSGFS 247 Query: 236 GQIGHTIVNPDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLI 295 G++GH ++P + C CGR GC E L L +QP+ L Q+ Sbjct: 248 GEVGHLHLDPRNLPCHCGRTGCWEARVGLPEFLAHTGDRLDAQPIDRLLI-------QIQ 300 Query: 296 AAWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGF 355 G+ + + +D A ++ L +++LN + L G F + + I Sbjct: 301 DRATRGDQQVLNALDNLATSLAEGLSVVIDMLNPRVVVLGGYFSWFTDFLIPPIAADLTA 360 Query: 356 NPFDRDEGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLRQ 396 D G + QL G +++ Sbjct: 361 RRLDPGAGALLAG-----AQLGMVSSAHGAALTALDSVFAN 396 >UniRef50_C7PXL8 ROK family protein n=2 Tax=Actinomycetales RepID=C7PXL8_CATAD Length = 390 Score = 297 bits (762), Expect = 4e-79, Method: Composition-based stats. Identities = 78/380 (20%), Positives = 152/380 (40%), Gaps = 22/380 (5%) Query: 21 LLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVN--IDDESQTRGHSSGTWLIAP 78 ++ + ++ LAR IS AV+ + + + + + G I P Sbjct: 22 MVLTEGPLSRVDLARRLGISSAAVTKAARPFLDDGYLHELDSERTAPGAGRPVSPLAITP 81 Query: 79 EGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRKLWPD 138 + ++ + + VT + VA+ + D P +L+ + P+ Sbjct: 82 DREFVIGVKVTADEVIGVVADLKARIRNSAHRQLPDCE-PATVLATLAALVEELLDADPE 140 Query: 139 ---HTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDCVMLAL 195 T + +A+ G VD V GV + P W V++ + + G+ V+V+ND L + Sbjct: 141 LRGKTRRMGVAVSGDVDRVRGVVRLSPLLGWQD-VDLAGPVGDATGLVVVVENDVKALTV 199 Query: 196 AEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDGVVCDCGR 254 AE W + DF ++ V GIG V ++ G+ +G++GH V+ G VC CG Sbjct: 200 AEHWFGDGVGTDDFTLVTVGAGIGCGIVTGGRLLSGAYGVAGEVGHVCVDASGPVCHCGA 259 Query: 255 YGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITSWVDRSAN 314 GC+E +A+ A+ +AR+ + LT + +SG P + + + Sbjct: 260 RGCVEAIAATEAIVGRARLLTGR---------DGLTFTEAAELARSGSPEVCALFSEAGT 310 Query: 315 AIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVKATQIGFG 374 AIGL++ +N++ +I + G + + I + + F + + Sbjct: 311 AIGLAITAVVNLIGPERIVVSGEGLDAYDLFETEIRQAYATHAFG-----AAARCPLTIR 365 Query: 375 QLSRAQQVLGIGYLYVEAQL 394 L + G + ++ Sbjct: 366 PLPFEEWARGAAAVGIQTLF 385 >UniRef50_A8F699 ROK family protein n=1 Tax=Thermotoga lettingae TMO RepID=A8F699_THELT Length = 375 Score = 297 bits (761), Expect = 5e-79, Method: Composition-based stats. Identities = 67/388 (17%), Positives = 151/388 (38%), Gaps = 20/388 (5%) Query: 10 IRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGH 69 I+ +++ IL +L R ++S L+ +S PAVS I+ L S + + + Sbjct: 2 IQKNSEREILRILRRSGHISRSKLSLQTGLSKPAVSEIVSGLISLGVIREVKKGKSSSKG 61 Query: 70 --SSGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEK 127 P+ + + ++V T + + + LL+ I K Sbjct: 62 GKRPILLEFKPDYRYIIAIDVGGTKLRVALTDLESRVIETRVVSSKGVTRKDDLLNLICK 121 Query: 128 CWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVD 187 + + + + + + G VD G MP +E+K ++++++ + +V Sbjct: 122 NISPFLE-EREKILGIGIGVPGTVDMKNGFVYYMPAFNLRN-IELKSMVQKEVDLPTLVA 179 Query: 188 NDCVMLALAEKWQNNSQE-RDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPD 246 ND + AL E W+ ++ ++ +I++ G G+ +++ + GS +G+IG+ I + Sbjct: 180 NDVNLNALGEMWKGAARGHKNVLLISLGTGTGAGIILDRHMCNGSRGMAGEIGYMITDWS 239 Query: 247 GVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWIT 306 + +G LE S AL+K+ + E ++ S + Sbjct: 240 REKYNDFPFGNLEKWFSGYALEKKLKEIG-----------ENMSLKDFFGRTAS-SEDLN 287 Query: 307 SWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSV 366 + ++ + + L++ N + +L+ + + G G N + II + Sbjct: 288 NILNEACEHLALAMVNAICLLDPEVVVITGGI---GFNQYDKIIEKIMPVFEKTVPAEIF 344 Query: 367 KATQIGFGQLSRAQQVLGIGYLYVEAQL 394 ++ +L ++G YL + Sbjct: 345 QSISFKKSELGDMGVIVGANYLVQKEFF 372 >UniRef50_B5ZXX6 ROK family protein n=10 Tax=Alphaproteobacteria RepID=B5ZXX6_RHILW Length = 393 Score = 296 bits (760), Expect = 8e-79, Method: Composition-based stats. Identities = 60/390 (15%), Positives = 146/390 (37%), Gaps = 21/390 (5%) Query: 11 RHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHS 70 R + ++ + + +++ +A+L +S +S+++++LE + + + G + Sbjct: 14 RKISTHAVIRTVLARGSISRADIAKLTGLSKQTISDVVRDLEDDGWLKPVGQTDGRPGRN 73 Query: 71 SGTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQAL--LSEIEKC 128 + T+ + + +++ T I + + + E + + S++ Sbjct: 74 AITYELNARAGLAVSIDLGGTKIAAAICDLLGNIIAETKVATDRRGGMHLVNQFSDLIVE 133 Query: 129 WHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDN 188 D + L G +DP TG P P + ++ + +++GI V+V+N Sbjct: 134 LALAAGTTADKLRLVVLGSPGVLDPATGHINVAPNIPGIDAINLRQVFSDRMGIPVIVEN 193 Query: 189 DCVMLALAEKWQNNS-QERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIVNPDG 247 D + A E+W+ + + +F + + G+G + N + RG+ +G+I + + D Sbjct: 194 DVNLAAQGERWRGHGVETGNFAFVALGTGVGMGIIANGALLRGARGAAGEIAYLPIGGDV 253 Query: 248 VVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIAAWQSGEPWITS 307 G E+ A+ ++ + T A L AA+ +G+ + Sbjct: 254 FDPGGFTLGTFESAVGSVAMLRRYTGFGGRNAA---------TVADLFAAFNAGDTSAVA 304 Query: 308 WVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRDEGPSVK 367 ++ +A + L++ L+ + G +N I R Sbjct: 305 AIEETARLVALAIAGIGATLDPELVITGGSIG-ARPELVNAIR-----GFLPRCTPYP-- 356 Query: 368 ATQIGFGQLSRAQQVLGIGYLYVEAQLRQI 397 +I + ++G + VE + Sbjct: 357 -PRIEISRFGNRAALMGGMGVAVERMHDDL 385 >UniRef50_C0W5B1 Transcriptional regulator/sugar kinase n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W5B1_9ACTO Length = 408 Score = 296 bits (759), Expect = 9e-79, Method: Composition-based stats. Identities = 84/394 (21%), Positives = 144/394 (36%), Gaps = 19/394 (4%) Query: 17 VILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQTRGHSSGTWLI 76 + L+ + + LA +S +S ++ +V T G + TW Sbjct: 14 TVANLVRTSRALTRQELASRTGMSRNTISTLIASAIETGLLVPDGSAPSTGGRAPQTWRF 73 Query: 77 APEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQALLSEIEKCWHRHRK-- 134 E + V +++ V + + P+ L E+ + + Sbjct: 74 HHEAGLIMVAGVHSSALHLAVTDLAGHALCQRMVDWPIMRGPEETLDEVARQMREMAENV 133 Query: 135 ----LWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEKLGIRVMVDNDC 190 P +++ G +D TG P P +V+ L+ +LG+ V VDND Sbjct: 134 QASSSRPLEVWGAGVSLPGPIDQSTGRPTAPPIMPGWDRFDVRGHLDNRLGVPVAVDNDV 193 Query: 191 VMLALAEKWQNNSQ----ERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQIGHTIV-NP 245 + L Q RD + + GIG+ + ++RG+ +G IGH V + Sbjct: 194 NTMLLGYATTLPDQRLRCPRDILYLQIGTGIGAGIMSAGHVHRGADGAAGDIGHVRVTDA 253 Query: 246 DGVVCDCGRYGCLETVASLSALKKQARVWLKSQPV----STQLDPEKLTTAQLIAAWQSG 301 D VVC CGR GCLE VA +L + AR + D LT +++ +G Sbjct: 254 DSVVCRCGRTGCLEAVAGGWSLLRDARRAAAEGLSPHLATRLEDTGTLTLEDIVSGVLAG 313 Query: 302 EPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFNPFDRD 361 + + + RSA A+G +L ++ N +Q+ L G +L+ R R Sbjct: 314 DTECLTLMVRSATAVGDALAMLVSFFNPSQVILAGALPQGCPMFLDVARRIVSE----RA 369 Query: 362 EGPSVKATQIGFGQLSRAQQVLGIGYLYVEAQLR 395 + Q+ + G L V A Sbjct: 370 LILATAGLQVTAAASGLEDERRGAALLTVNALFN 403 >UniRef50_A5IKW0 ROK family protein n=6 Tax=Thermotogaceae RepID=A5IKW0_THEP1 Length = 379 Score = 296 bits (759), Expect = 9e-79, Method: Composition-based stats. Identities = 81/402 (20%), Positives = 162/402 (40%), Gaps = 37/402 (9%) Query: 6 NNQQIRHHNKCVILELLYRQKRANKSTLARLAQISIPAVSNILQELESEKRVVNIDDESQ 65 N+ +I+ NK IL++++ ++S ++ + ++ +V+ + +EL E + I Sbjct: 4 NSPRIKILNKKSILKVIHENHPISRSDISEVTGLTPSSVTRLTKELIDEGYIREIG---- 59 Query: 66 TRGHSS------GTWLIAPEGDWTLCLNVTPTSIECQVANACLSPKGEFEYLQIDAPTPQ 119 T G +S + +L ++ V + + P Sbjct: 60 TMGKNSPGRRRRILLDLRKNAFLSLVFDIGVNITTYGVGFFDGEVEPRGTFNTP--REPV 117 Query: 120 ALLSEIEKCWHRHRKLWPDHTINLALAIHGQVDPVTGVSQTMPQAPWTTPVEVKYLLEEK 179 + +++ + R ++L++ G VD P W V +K LL K Sbjct: 118 EFFNIVKEIYERISG--EYRISRISLSVPGMVDMEEKKILLAPNLEWEN-VSIKELL--K 172 Query: 180 LGIRVMVDNDCVMLALAEKWQNN--SQERDFCVINVDYGIGSSFVINEQIYRGSLYGSGQ 237 + + V+ DN+ + LAEK+ + ++ I + G+G+ +I+ +I+RG + +G+ Sbjct: 173 VDVPVLADNEANLSMLAEKYHSEDLRNVKEAVFIIIREGVGAGLMIDGKIFRGPSFTAGE 232 Query: 238 IGHTIVN-PDGVVCDCGRYGCLETVASLSALKKQARVWLKSQPVSTQLDPEKLTTAQLIA 296 GH VN C C +GC E V+S++ +Q L P K + A Sbjct: 233 AGHMTVNMYSDRQCHCSNWGCWELVSSINWAIEQYGKEL----------PGKNAIEKFQA 282 Query: 297 AWQSGEPWITSWVDRSANAIGLSLYNFLNILNINQIWLYGRSCAFGENWLNTIIRQTGFN 356 Q + + + A I + + N +NILN + L G G+++L+ + Sbjct: 283 LKQRND--AKRILMKFAENIAVGIVNLVNILNPELVILGGEVVDLGDSFLDIVKDFVHQ- 339 Query: 357 PFDRDEGPSVKATQIGFGQLSRAQQ-VLGIGYLYVEAQLRQI 397 R +VK +I + ++G L VE + ++ Sbjct: 340 ---RALKAAVKDLKIRTTEFRNISSNLVGAAVLAVEDIIEEV 378 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.190 0.608 Lambda K H 0.267 0.0581 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 3,124,251,837 Number of Sequences: 3077464 Number of extensions: 187400525 Number of successful extensions: 612128 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 4115 Number of HSP's successfully gapped in prelim test: 1971 Number of HSP's that attempted gapping in prelim test: 592966 Number of HSP's gapped (non-prelim): 6976 length of query: 397 length of database: 1,040,396,356 effective HSP length: 131 effective length of query: 266 effective length of database: 637,248,572 effective search space: 169508120152 effective search space used: 169508120152 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (20.9 bits) S2: 95 (40.7 bits)