Phyre 2 Results for P0AEX9

Phyre Home | Retrieve Phyre Job Id

Email | l.a.kelley@imperial.ac.uk
Description | P0AEX9
Date | Thu Jan 5 11:24:34 GMT 2012
Unique Job ID | 475e35ab46ea6d02

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3osqA_
Top template information
PDB header:fluorescent protein, transport protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, green fluorescent PDBTitle: maltose-bound maltose sensor engineered by insertion of circularly2 permuted green fluorescent protein into e. coli maltose binding3 protein at position 175
Confidence and coverage
Confidence: | 100.0% | Coverage: | 92%
366 residues ( 92% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | K | I | K | T | G | A | R | I | L | A | L | S | A | L | T | T | M | M | F | S | A | S | A | L | A | K | I | E | E | G | K | L | V | I | W | I | N | G | D | K | G | Y | N | G | L | A | E | V | G | K | K | F | E | K | D | T | G | I | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | V | T | V | E | H | P | D | K | L | E | E | K | F | P | Q | V | A | A | T | G | D | G | P | D | I | I | F | W | A | H | D | R | F | G | G | Y | A | Q | S | G | L | L | A | E | I | T | P | D | K | A | F | Q | D | K | L | Y | P | F | T | W
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | D | A | V | R | Y | N | G | K | L | I | A | Y | P | I | A | V | E | A | L | S | L | I | Y | N | K | D | L | L | P | N | P | P | K | T | W | E | E | I | P | A | L | D | K | E | L | K | A | K | G | K | S | A | L | M | F | N | L | Q | E | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | Y | F | T | W | P | L | I | A | A | D | G | G | Y | A | F | K | Y | E | N | G | K | Y | D | I | K | D | V | G | V | D | N | A | G | A | K | A | G | L | T | F | L | V | D | L | I | K | N | K | H | M | N | A | D | T | D | Y | S | I | A | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  | ? | ? | ? |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | A | A | F | N | K | G | E | T | A | M | T | I | N | G | P | W | A | W | S | N | I | D | T | S | K | V | N | Y | G | V | T | V | L | P | T | F | K | G | Q | P | S | K | P | F | V | G | V | L | S | A | G | I | N | A | A | S | P | N | K | E
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | L | A | K | E | F | L | E | N | Y | L | L | T | D | E | G | L | E | A | V | N | K | D | K | P | L | G | A | V | A | L | K | S | Y | E | E | E | L | A | K | D | P | R | I | A | A | T | M | E | N | A | Q | K | G | E | I | M | P | N | I | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | .
Sequence |  | Q | M | S | A | F | W | Y | A | V | R | T | A | V | I | N | A | A | S | G | R | Q | T | V | D | E | A | L | K | D | A | Q | T | R | I | T | K
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3osqA_ |

### PDB 3osq chain A

Region: 29 - 394
Aligned: 366
Modelled: 366
Confidence: 100.0%
Identity: 100%
PDB header:fluorescent protein, transport protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein, green fluorescent
PDBTitle: maltose-bound maltose sensor engineered by insertion of circularly2 permuted green fluorescent protein into e. coli maltose binding3 protein at position 175

Phyre2
2 |
| c3h4zC_ |

### PDB 3h4z chain C

Region: 29 - 395
Aligned: 367
Modelled: 367
Confidence: 100.0%
Identity: 97%
PDB header:allergen
Chain: C: PDB Molecule:maltose-binding periplasmic protein fused with allergen
PDBTitle: crystal structure of an mbp-der p 7 fusion protein

Phyre2
3 |
| c3f5fA_ |

### PDB 3f5f chain A

Region: 27 - 395
Aligned: 369
Modelled: 369
Confidence: 100.0%
Identity: 98%
PDB header:transport, transferase
Chain: A: PDB Molecule:maltose-binding periplasmic protein, heparan
PDBTitle: crystal structure of heparan sulfate 2-o-sulfotransferase2 from gallus gallus as a maltose binding protein fusion.

Phyre2
4 |
| c3ob4A_ |

### PDB 3ob4 chain A

Region: 27 - 395
Aligned: 369
Modelled: 369
Confidence: 100.0%
Identity: 97%
PDB header:allergen
Chain: A: PDB Molecule:maltose abc transporter periplasmic protein, arah 2;
PDBTitle: mbp-fusion protein of the major peanut allergen ara h 2

Phyre2
5 |
| c1hsjA_ |

### PDB 1hsj chain A

Region: 27 - 396
Aligned: 370
Modelled: 370
Confidence: 100.0%
Identity: 98%
PDB header:transcription/sugar binding protein
Chain: A: PDB Molecule:fusion protein consisting of staphylococcus
PDBTitle: sarr mbp fusion structure

Phyre2
6 |
| c3c4mA_ |

### PDB 3c4m chain A

Region: 26 - 395
Aligned: 370
Modelled: 370
Confidence: 100.0%
Identity: 99%
PDB header:membrane protein
Chain: A: PDB Molecule:fusion protein of maltose-binding periplasmic protein and
PDBTitle: structure of human parathyroid hormone in complex with the2 extracellular domain of its g-protein-coupled receptor (pth1r)

Phyre2
7 |
| c3oaiB_ |

### PDB 3oai chain B

Region: 27 - 394
Aligned: 368
Modelled: 368
Confidence: 100.0%
Identity: 100%
PDB header:membrane protein, cell adhesion
Chain: B: PDB Molecule:maltose-binding periplasmic protein, myelin protein p0;
PDBTitle: crystal structure of the extra-cellular domain of human myelin protein2 zero

Phyre2
8 |
| c1r6zA_ |

### PDB 1r6z chain A

Region: 29 - 395
Aligned: 367
Modelled: 367
Confidence: 100.0%
Identity: 99%
PDB header:gene regulation
Chain: A: PDB Molecule:chimera of maltose-binding periplasmic protein and
PDBTitle: the crystal structure of the argonaute2 paz domain (as a mbp fusion)

Phyre2
9 |
| c3dm0A_ |

### PDB 3dm0 chain A

Region: 27 - 395
Aligned: 369
Modelled: 369
Confidence: 100.0%
Identity: 98%
PDB header:sugar binding protein,signaling protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with
PDBTitle: maltose binding protein fusion with rack1 from a. thaliana

Phyre2
10 |
| c3mp6A_ |

### PDB 3mp6 chain A

Region: 27 - 395
Aligned: 369
Modelled: 369
Confidence: 100.0%
Identity: 99%
PDB header:histone binding protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein, linker, saga-
PDBTitle: complex structure of sgf29 and dimethylated h3k4

Phyre2
11 |
| c3py7A_ |

### PDB 3py7 chain A

Region: 29 - 395
Aligned: 367
Modelled: 367
Confidence: 100.0%
Identity: 98%
PDB header:viral protein
Chain: A: PDB Molecule:maltose-binding periplasmic protein,paxillin ld1,protein e6
PDBTitle: crystal structure of full-length bovine papillomavirus oncoprotein e62 in complex with ld1 motif of paxillin at 2.3a resolution

Phyre2
12 |
| c3d4cA_ |

### PDB 3d4c chain A

Region: 30 - 395
Aligned: 366
Modelled: 366
Confidence: 100.0%
Identity: 98%
PDB header:cell adhesion
Chain: A: PDB Molecule:maltose-binding periplasmic protein, linker, zona pellucida
PDBTitle: zp-n domain of mammalian sperm receptor zp3 (crystal form i)

Phyre2
13 |
| c3csgA_ |

### PDB 3csg chain A

Region: 32 - 396
Aligned: 365
Modelled: 365
Confidence: 100.0%
Identity: 100%
PDB header:de novo protein, sugar binding protein
Chain: A: PDB Molecule:maltose-binding protein monobody ys1 fusion;
PDBTitle: crystal structure of monobody ys1(mbp-74)/maltose binding2 protein fusion complex

Phyre2
14 |
| c3o3uN_ |

### PDB 3o3u chain N

Region: 29 - 396
Aligned: 368
Modelled: 368
Confidence: 100.0%
Identity: 98%
PDB header:transport protein, signaling protein
Chain: N: PDB Molecule:maltose-binding periplasmic protein, advanced glycosylation
PDBTitle: crystal structure of human receptor for advanced glycation endproducts2 (rage)

Phyre2
15 |
| c1y4cA_ |

### PDB 1y4c chain A

Region: 30 - 396
Aligned: 367
Modelled: 367
Confidence: 100.0%
Identity: 99%
PDB header:de novo protein
Chain: A: PDB Molecule:maltose binding protein fused with designed
PDBTitle: designed helical protein fusion mbp

Phyre2
16 |
| c2vgqA_ |

### PDB 2vgq chain A

Region: 29 - 396
Aligned: 368
Modelled: 368
Confidence: 100.0%
Identity: 99%
PDB header:immune system/transport
Chain: A: PDB Molecule:maltose-binding periplasmic protein,
PDBTitle: crystal structure of human ips-1 card

Phyre2
17 |
| c2nvuB_ |

### PDB 2nvu chain B

Region: 27 - 395
Aligned: 357
Modelled: 369
Confidence: 100.0%
Identity: 97%
PDB header:protein turnover, ligase
Chain: B: PDB Molecule:maltose binding protein/nedd8-activating enzyme
PDBTitle: structure of appbp1-uba3~nedd8-nedd8-mgatp-ubc12(c111a), a2 trapped ubiquitin-like protein activation complex

Phyre2
18 |
| c1mg1A_ |

### PDB 1mg1 chain A

Region: 31 - 396
Aligned: 366
Modelled: 366
Confidence: 100.0%
Identity: 98%
PDB header:viral protein
Chain: A: PDB Molecule:protein (htlv-1 gp21 ectodomain/maltose-binding protein
PDBTitle: htlv-1 gp21 ectodomain/maltose-binding protein chimera

Phyre2
19 |
| c3ehuA_ |

### PDB 3ehu chain A

Region: 27 - 396
Aligned: 361
Modelled: 370
Confidence: 100.0%
Identity: 98%
PDB header:membrane protein
Chain: A: PDB Molecule:fusion protein of crfr1 extracellular domain and mbp;
PDBTitle: crystal structure of the extracellular domain of human corticotropin2 releasing factor receptor type 1 (crfr1) in complex with crf

Phyre2
20 |
| c3iouB_ |

### PDB 3iou chain B

Region: 27 - 395
Aligned: 369
Modelled: 369
Confidence: 100.0%
Identity: 98%
PDB header:signaling protein
Chain: B: PDB Molecule:maltose-binding protein, huntingtin fusion
PDBTitle: huntingtin amino-terminal region with 17 gln residues -2 crystal c94

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3osqA_ |
|  | 100.0 | 100 | PDB header:fluorescent protein, transport protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, green fluorescent PDBTitle: maltose-bound maltose sensor engineered by insertion of circularly2 permuted green fluorescent protein into e. coli maltose binding3 protein at position 175
2 | c3h4zC_ |
|  | 100.0 | 97 | PDB header:allergen Chain: C: PDB Molecule:maltose-binding periplasmic protein fused with allergen PDBTitle: crystal structure of an mbp-der p 7 fusion protein
3 | c3f5fA_ |
|  | 100.0 | 98 | PDB header:transport, transferase Chain: A: PDB Molecule:maltose-binding periplasmic protein, heparan PDBTitle: crystal structure of heparan sulfate 2-o-sulfotransferase2 from gallus gallus as a maltose binding protein fusion.
4 | c3ob4A_ |
|  | 100.0 | 97 | PDB header:allergen Chain: A: PDB Molecule:maltose abc transporter periplasmic protein, arah 2; PDBTitle: mbp-fusion protein of the major peanut allergen ara h 2
5 | c1hsjA_ |
|  | 100.0 | 98 | PDB header:transcription/sugar binding protein Chain: A: PDB Molecule:fusion protein consisting of staphylococcus PDBTitle: sarr mbp fusion structure
6 | c3c4mA_ |
|  | 100.0 | 99 | PDB header:membrane protein Chain: A: PDB Molecule:fusion protein of maltose-binding periplasmic protein and PDBTitle: structure of human parathyroid hormone in complex with the2 extracellular domain of its g-protein-coupled receptor (pth1r)
7 | c3oaiB_ |
|  | 100.0 | 100 | PDB header:membrane protein, cell adhesion Chain: B: PDB Molecule:maltose-binding periplasmic protein, myelin protein p0; PDBTitle: crystal structure of the extra-cellular domain of human myelin protein2 zero
8 | c1r6zA_ |
|  | 100.0 | 99 | PDB header:gene regulation Chain: A: PDB Molecule:chimera of maltose-binding periplasmic protein and PDBTitle: the crystal structure of the argonaute2 paz domain (as a mbp fusion)
9 | c3dm0A_ |
|  | 100.0 | 98 | PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana
10 | c3mp6A_ |
|  | 100.0 | 99 | PDB header:histone binding protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, linker, saga- PDBTitle: complex structure of sgf29 and dimethylated h3k4
11 | c3py7A_ |
|  | 100.0 | 98 | PDB header:viral protein Chain: A: PDB Molecule:maltose-binding periplasmic protein,paxillin ld1,protein e6 PDBTitle: crystal structure of full-length bovine papillomavirus oncoprotein e62 in complex with ld1 motif of paxillin at 2.3a resolution
12 | c3d4cA_ |
|  | 100.0 | 98 | PDB header:cell adhesion Chain: A: PDB Molecule:maltose-binding periplasmic protein, linker, zona pellucida PDBTitle: zp-n domain of mammalian sperm receptor zp3 (crystal form i)
13 | c3csgA_ |
|  | 100.0 | 100 | PDB header:de novo protein, sugar binding protein Chain: A: PDB Molecule:maltose-binding protein monobody ys1 fusion; PDBTitle: crystal structure of monobody ys1(mbp-74)/maltose binding2 protein fusion complex
14 | c3o3uN_ |
|  | 100.0 | 98 | PDB header:transport protein, signaling protein Chain: N: PDB Molecule:maltose-binding periplasmic protein, advanced glycosylation PDBTitle: crystal structure of human receptor for advanced glycation endproducts2 (rage)
15 | c1y4cA_ |
|  | 100.0 | 99 | PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp
16 | c2vgqA_ |
|  | 100.0 | 99 | PDB header:immune system/transport Chain: A: PDB Molecule:maltose-binding periplasmic protein, PDBTitle: crystal structure of human ips-1 card
17 | c2nvuB_ |
|  | 100.0 | 97 | PDB header:protein turnover, ligase Chain: B: PDB Molecule:maltose binding protein/nedd8-activating enzyme PDBTitle: structure of appbp1-uba3~nedd8-nedd8-mgatp-ubc12(c111a), a2 trapped ubiquitin-like protein activation complex
18 | c1mg1A_ |
|  | 100.0 | 98 | PDB header:viral protein Chain: A: PDB Molecule:protein (htlv-1 gp21 ectodomain/maltose-binding protein PDBTitle: htlv-1 gp21 ectodomain/maltose-binding protein chimera
19 | c3ehuA_ |
|  | 100.0 | 98 | PDB header:membrane protein Chain: A: PDB Molecule:fusion protein of crfr1 extracellular domain and mbp; PDBTitle: crystal structure of the extracellular domain of human corticotropin2 releasing factor receptor type 1 (crfr1) in complex with crf
20 | c3iouB_ |
|  | 100.0 | 98 | PDB header:signaling protein Chain: B: PDB Molecule:maltose-binding protein, huntingtin fusion PDBTitle: huntingtin amino-terminal region with 17 gln residues -2 crystal c94
21 | c1svxB_ |
| not modelled | 100.0 | 99 | PDB header:de novo protein/sugar binding protein Chain: B: PDB Molecule:maltose-binding periplasmic protein; PDBTitle: crystal structure of a designed selected ankyrin repeat2 protein in complex with the maltose binding protein
22 | d1laxa_ |
| not modelled | 100.0 | 99 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
23 | c1mh3A_ |
| not modelled | 100.0 | 98 | PDB header:sugar binding, dna binding protein Chain: A: PDB Molecule:maltose binding-a1 homeodomain protein chimera; PDBTitle: maltose binding-a1 homeodomain protein chimera, crystal2 form i
24 | c2zykA_ |
| not modelled | 100.0 | 28 | PDB header:sugar binding protein Chain: A: PDB Molecule:solute-binding protein; PDBTitle: crystal structure of cyclo/maltodextrin-binding protein2 complexed with gamma-cyclodextrin
25 | c3osrA_ |
| not modelled | 100.0 | 98 | PDB header:fluorescent protein, transport protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, green fluorescent PDBTitle: maltose-bound maltose sensor engineered by insertion of circularly2 permuted green fluorescent protein into e. coli maltose binding3 protein at position 311
26 | d1elja_ |
| not modelled | 100.0 | 27 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
27 | c2gh9A_ |
| not modelled | 100.0 | 29 | PDB header:sugar binding protein Chain: A: PDB Molecule:maltose/maltodextrin-binding protein; PDBTitle: thermus thermophilus maltotriose binding protein bound with2 maltotriose
28 | c2fncA_ |
| not modelled | 100.0 | 34 | PDB header:sugar binding protein Chain: A: PDB Molecule:maltose abc transporter, periplasmic maltose-binding PDBTitle: thermotoga maritima maltotriose binding protein bound with2 maltotriose.
29 | c3uorB_ |
| not modelled | 100.0 | 20 | PDB header:sugar binding protein Chain: B: PDB Molecule:abc transporter sugar binding protein; PDBTitle: the structure of the sugar-binding protein male from the phytopathogen2 xanthomonas citri
30 | d1ursa_ |
| not modelled | 100.0 | 28 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
31 | c1ursA_ |
| not modelled | 100.0 | 28 | PDB header:maltose-binding protein Chain: A: PDB Molecule:maltose-binding protein; PDBTitle: x-ray structures of the maltose-maltodextrin binding2 protein of the thermoacidophilic bacterium alicyclobacillus3 acidocaldarius
32 | c2xd3A_ |
| not modelled | 100.0 | 25 | PDB header:sugar binding protein Chain: A: PDB Molecule:maltose/maltodextrin-binding protein; PDBTitle: the crystal structure of malx from streptococcus pneumoniae2 in complex with maltopentaose.
33 | c3k02A_ |
| not modelled | 100.0 | 21 | PDB header:transport protein Chain: A: PDB Molecule:acarbose/maltose binding protein gach; PDBTitle: crystal structures of the gach receptor of streptomyces glaucescens2 gla.o in the unliganded form and in complex with acarbose and an3 acarbose homolog. comparison with acarbose-loaded maltose binding4 protein of salmonella typhimurium.
34 | d1eu8a_ |
| not modelled | 100.0 | 22 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
35 | c3qufB_ |
| not modelled | 100.0 | 17 | PDB header:transport protein Chain: B: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: the structure of a family 1 extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis
36 | c2uvgA_ |
| not modelled | 100.0 | 18 | PDB header:sugar-binding protein Chain: A: PDB Molecule:abc type periplasmic sugar-binding protein; PDBTitle: structure of a periplasmic oligogalacturonide binding2 protein from yersinia enterocolitica
37 | c2z8fB_ |
| not modelled | 100.0 | 19 | PDB header:sugar binding protein Chain: B: PDB Molecule:galacto-n-biose/lacto-n-biose i transporter substrate- PDBTitle: the galacto-n-biose-/lacto-n-biose i-binding protein (gl-bp) of the2 abc transporter from bifidobacterium longum in complex with lacto-n-3 tetraose
38 | c3oo6A_ |
| not modelled | 100.0 | 14 | PDB header:sugar binding protein Chain: A: PDB Molecule:abc transporter binding protein acbh; PDBTitle: crystal structures and biochemical characterization of the bacterial2 solute receptor acbh reveal an unprecedented exclusive substrate3 preference for b-d-galactopyranose
39 | c2b3fD_ |
| not modelled | 100.0 | 15 | PDB header:sugar binding protein Chain: D: PDB Molecule:glucose-binding protein; PDBTitle: thermus thermophilus glucose/galactose binding protein2 bound with galactose
40 | c3i3vC_ |
| not modelled | 100.0 | 15 | PDB header:transport protein Chain: C: PDB Molecule:probable secreted solute-binding lipoprotein; PDBTitle: crystal structure of probable secreted solute-binding2 lipoprotein from streptomyces coelicolor
41 | c2w7yA_ |
| not modelled | 100.0 | 16 | PDB header:sugar-binding protein Chain: A: PDB Molecule:probable sugar abc transporter, sugar-binding PDBTitle: structure of a streptococcus pneumoniae solute-binding2 protein in complex with the blood group a-trisaccharide.
42 | c2i58B_ |
| not modelled | 100.0 | 20 | PDB header:sugar binding protein Chain: B: PDB Molecule:sugar abc transporter, sugar-binding protein; PDBTitle: crystal structure of rafe from streptococcus pneumoniae complexed with2 raffinose
43 | d1y3na1 |
| not modelled | 100.0 | 15 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
44 | d1j1na_ |
| not modelled | 100.0 | 15 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
45 | d3thia_ |
| not modelled | 100.0 | 15 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
46 | d1a99a_ |
| not modelled | 100.0 | 18 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
47 | d1pota_ |
| not modelled | 100.0 | 16 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
48 | c2v84A_ |
| not modelled | 100.0 | 14 | PDB header:transport protein Chain: A: PDB Molecule:spermidine/putrescine abc transporter, periplasmic PDBTitle: crystal structure of the tp0655 (tppotd) lipoprotein of2 treponema pallidum
49 | c3ombA_ |
| not modelled | 100.0 | 15 | PDB header:transport protein Chain: A: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: crystal structure of extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis
50 | c3rpwA_ |
| not modelled | 100.0 | 19 | PDB header:transport protein Chain: A: PDB Molecule:abc transporter; PDBTitle: the crystal structure of an abc transporter from rhodopseudomonas2 palustris cga009
51 | c3pu5A_ |
| not modelled | 100.0 | 15 | PDB header:transport protein Chain: A: PDB Molecule:extracellular solute-binding protein; PDBTitle: the crystal structure of a putative extracellular solute-binding2 protein from bordetella parapertussis
52 | c3c9hB_ |
| not modelled | 100.0 | 14 | PDB header:transport protein Chain: B: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of the substrate binding protein of the abc2 transporter from agrobacterium tumefaciens
53 | c2pt1A_ |
| not modelled | 100.0 | 18 | PDB header:metal transport Chain: A: PDB Molecule:iron transport protein; PDBTitle: futa1 synechocystis pcc 6803
54 | d1y4ta_ |
| not modelled | 100.0 | 19 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
55 | d1q35a_ |
| not modelled | 100.0 | 16 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
56 | d1xvxa_ |
| not modelled | 100.0 | 20 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
57 | d1y9ua_ |
| not modelled | 100.0 | 16 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
58 | c2qryD_ |
| not modelled | 100.0 | 16 | PDB header:transport protein Chain: D: PDB Molecule:thiamine-binding periplasmic protein; PDBTitle: periplasmic thiamin binding protein
59 | d1xc1a_ |
| not modelled | 100.0 | 16 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
60 | d1nnfa_ |
| not modelled | 100.0 | 21 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
61 | d1xvya_ |
| not modelled | 100.0 | 19 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
62 | c2vozA_ |
| not modelled | 100.0 | 15 | PDB header:metal-binding protein Chain: A: PDB Molecule:periplasmic iron-binding protein; PDBTitle: apo futa2 from synechocystis pcc6803
63 | d2onsa1 |
| not modelled | 100.0 | 12 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
64 | c3cfzA_ |
| not modelled | 99.9 | 12 | PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein mj1186; PDBTitle: crystal structure of m. jannaschii periplasmic binding2 protein moda/wtpa with bound tungstate
65 | c3cfxA_ |
| not modelled | 99.9 | 12 | PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein ma_0280; PDBTitle: crystal structure of m. acetivorans periplasmic binding protein2 moda/wtpa with bound tungstate
66 | c3k6wA_ |
| not modelled | 99.9 | 9 | PDB header:transport protein Chain: A: PDB Molecule:solute-binding protein ma_0280; PDBTitle: apo and ligand bound structures of moda from the archaeon2 methanosarcina acetivorans
67 | c3cg1A_ |
| not modelled | 99.9 | 15 | PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein pf0080; PDBTitle: crystal structure of p. furiosus periplasmic binding protein2 moda/wtpa with bound tungstate
68 | c3cg3A_ |
| not modelled | 99.9 | 15 | PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein ph0151; PDBTitle: crystal structure of p. horikoshii periplasmic binding2 protein moda/wtpa with bound tungstate
69 | d1sbpa_ |
| not modelled | 99.8 | 16 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
70 | d1atga_ |
| not modelled | 99.6 | 13 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
71 | d1amfa_ |
| not modelled | 99.5 | 15 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
72 | c2h5yC_ |
| not modelled | 99.4 | 16 | PDB header:metal transport Chain: C: PDB Molecule:molybdate-binding periplasmic protein; PDBTitle: crystallographic structure of the molybdate-binding protein of2 xanthomonas citri at 1.7 ang resolution bound to molybdate
73 | c3fj7A_ |
| not modelled | 99.3 | 17 | PDB header:protein binding Chain: A: PDB Molecule:major antigenic peptide peb3; PDBTitle: crystal structure of l-phospholactate bound peb3
74 | c3lr1A_ |
| not modelled | 99.2 | 13 | PDB header:transport protein Chain: A: PDB Molecule:tungstate abc transporter, periplasmic tungstate- PDBTitle: the crystal structure of the tungstate abc transporter from2 geobacter sulfurreducens
75 | c3muqB_ |
| not modelled | 99.1 | 16 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved functionally unknown protein from2 vibrio parahaemolyticus rimd 2210633
76 | c3kn3C_ |
| not modelled | 98.9 | 10 | PDB header:transcription Chain: C: PDB Molecule:putative periplasmic protein; PDBTitle: crystal structure of lysr substrate binding domain (25-263) of2 putative periplasmic protein from wolinella succinogenes
77 | c1twyG_ |
| not modelled | 98.7 | 11 | PDB header:structural genomics, unknown function Chain: G: PDB Molecule:abc transporter, periplasmic substrate-binding protein; PDBTitle: crystal structure of an abc-type phosphate transport receptor from2 vibrio cholerae
78 | d1twya_ |
| not modelled | 98.7 | 11 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
79 | c3k2dA_ |
| not modelled | 93.5 | 9 | PDB header:immune system Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus
80 | c3ir1F_ |
| not modelled | 84.6 | 10 | PDB header:protein binding Chain: F: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of lipoprotein gna1946 from neisseria2 meningitidis
81 | c3cvgC_ |
| not modelled | 83.2 | 21 | PDB header:metal binding protein Chain: C: PDB Molecule:putative metal binding protein; PDBTitle: crystal structure of a periplasmic putative metal binding protein
82 | c3gxaA_ |
| not modelled | 80.8 | 10 | PDB header:protein binding Chain: A: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of gna1946
83 | d1pc3a_ |
| not modelled | 76.7 | 8 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
84 | c3e4rA_ |
| not modelled | 71.7 | 15 | PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of the alkanesulfonate binding protein2 (ssua) from the phytopathogenic bacteria xanthomonas3 axonopodis pv. citri bound to hepes
85 | d1xs5a_ |
| not modelled | 67.9 | 12 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
86 | c3tqwA_ |
| not modelled | 65.9 | 6 | PDB header:transport protein Chain: A: PDB Molecule:methionine-binding protein; PDBTitle: structure of a abc transporter, periplasmic substrate-binding protein2 from coxiella burnetii
87 | c2x7pA_ |
| not modelled | 56.3 | 10 | PDB header:unknown function Chain: A: PDB Molecule:possible thiamine biosynthesis enzyme; PDBTitle: the conserved candida albicans ca3427 gene product defines a new2 family of proteins exhibiting the generic periplasmic binding3 protein structural fold
88 | c2x26A_ |
| not modelled | 53.0 | 14 | PDB header:transport protein Chain: A: PDB Molecule:periplasmic aliphatic sulphonates-binding protein; PDBTitle: crystal structure of the periplasmic aliphatic sulphonate2 binding protein ssua from escherichia coli
89 | c3ix1A_ |
| not modelled | 48.2 | 11 | PDB header:biosynthetic protein Chain: A: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans
90 | c3ix1B_ |
| not modelled | 48.2 | 11 | PDB header:biosynthetic protein Chain: B: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans
91 | c2dvzA_ |
| not modelled | 38.6 | 11 | PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of a periplasmic transporter
92 | d1p99a_ |
| not modelled | 38.1 | 17 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
93 | c1p99A_ |
| not modelled | 38.1 | 17 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pg110; PDBTitle: 1.7a crystal structure of protein pg110 from staphylococcus2 aureus
94 | d2pp4a1 |
| not modelled | 33.4 | 21 | Fold:TAFH domain-like Superfamily:TAFH domain-like Family:TAFH domain-like
95 | c3hhfB_ |
| not modelled | 30.3 | 18 | PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: structure of crga regulatory domain, a lysr-type transcriptional2 regulator from neisseria meningitidis.
96 | d1ixha_ |
| not modelled | 28.3 | 17 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
97 | c3mz1D_ |
| not modelled | 27.8 | 18 | PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator; PDBTitle: the crystal structure of a possible transcription regulator protein2 from sinorhizobium meliloti 1021
98 | c3n6uA_ |
| not modelled | 25.4 | 13 | PDB header:transcription regulator Chain: A: PDB Molecule:lysr type regulator of tsambcd; PDBTitle: effector binding domain of tsar in complex with its inducer p-2 toluenesulfonate
99 | c3l6gA_ |
| not modelled | 25.3 | 16 | PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation
100 | c2hpgB_ |
| not modelled | 24.1 | 19 | PDB header:ligand binding protein Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding PDBTitle: the crystal structure of a thermophilic trap periplasmic2 binding protein
101 | d2esna2 |
| not modelled | 22.3 | 7 | Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like
102 | c2pjuD_ |
| not modelled | 21.9 | 18 | PDB header:transcription Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr
103 | c1al3A_ |
| not modelled | 21.8 | 13 | PDB header:transcription regulation Chain: A: PDB Molecule:cys regulon transcriptional activator cysb; PDBTitle: cofactor binding fragment of cysb from klebsiella aerogenes

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0