Secondary structure and disorder prediction

		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60
Sequence		M	K	I	K	T	G	A	R	I	L	A	L	S	A	L	T	T	M	M	F	S	A	S	A	L	A	K	I	E	E	G	K	L	V	I	W	I	N	G	D	K	G	Y	N	G	L	A	E	V	G	K	K	F	E	K	D	T	G	I	K
Secondary structure
SS confidence
Disorder		?	?	?	?																	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120
Sequence		V	T	V	E	H	P	D	K	L	E	E	K	F	P	Q	V	A	A	T	G	D	G	P	D	I	I	F	W	A	H	D	R	F	G	G	Y	A	Q	S	G	L	L	A	E	I	T	P	D	K	A	F	Q	D	K	L	Y	P	F	T	W
Secondary structure
SS confidence
Disorder																			?
Disorder confidence
		.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
Sequence		D	A	V	R	Y	N	G	K	L	I	A	Y	P	I	A	V	E	A	L	S	L	I	Y	N	K	D	L	L	P	N	P	P	K	T	W	E	E	I	P	A	L	D	K	E	L	K	A	K	G	K	S	A	L	M	F	N	L	Q	E	P
Secondary structure
SS confidence
Disorder
Disorder confidence
		.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Sequence		Y	F	T	W	P	L	I	A	A	D	G	G	Y	A	F	K	Y	E	N	G	K	Y	D	I	K	D	V	G	V	D	N	A	G	A	K	A	G	L	T	F	L	V	D	L	I	K	N	K	H	M	N	A	D	T	D	Y	S	I	A	E
Secondary structure
SS confidence
Disorder																																																				?	?		?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300
Sequence		A	A	F	N	K	G	E	T	A	M	T	I	N	G	P	W	A	W	S	N	I	D	T	S	K	V	N	Y	G	V	T	V	L	P	T	F	K	G	Q	P	S	K	P	F	V	G	V	L	S	A	G	I	N	A	A	S	P	N	K	E
Secondary structure
SS confidence
Disorder																																																?
Disorder confidence
		.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360
Sequence		L	A	K	E	F	L	E	N	Y	L	L	T	D	E	G	L	E	A	V	N	K	D	K	P	L	G	A	V	A	L	K	S	Y	E	E	E	L	A	K	D	P	R	I	A	A	T	M	E	N	A	Q	K	G	E	I	M	P	N	I	P
Secondary structure
SS confidence
Disorder																								?	?	?	?	?	?	?	?	?	?	?	?
Disorder confidence
		.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.
Sequence		Q	M	S	A	F	W	Y	A	V	R	T	A	V	I	N	A	A	S	G	R	Q	T	V	D	E	A	L	K	D	A	Q	T	R	I	T	K
Secondary structure
SS confidence
Disorder																																				?	?
Disorder confidence

Confidence Key
High(9)											Low (0)

?	Disordered
	Alpha helix
	Beta strand

Domain analysis

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank Aligned region

PDB 3osq chain A Region: 29 - 394 Aligned: 366 Modelled: 366 Confidence: 100.0% Identity: 100% PDB header:fluorescent protein, transport protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, green fluorescent PDBTitle: maltose-bound maltose sensor engineered by insertion of circularly2 permuted green fluorescent protein into e. coli maltose binding3 protein at position 175 Phyre2 PDB 3h4z chain C Region: 29 - 395 Aligned: 367 Modelled: 367 Confidence: 100.0% Identity: 97% PDB header:allergen Chain: C: PDB Molecule:maltose-binding periplasmic protein fused with allergen PDBTitle: crystal structure of an mbp-der p 7 fusion protein Phyre2 PDB 3f5f chain A Region: 27 - 395 Aligned: 369 Modelled: 369 Confidence: 100.0% Identity: 98% PDB header:transport, transferase Chain: A: PDB Molecule:maltose-binding periplasmic protein, heparan PDBTitle: crystal structure of heparan sulfate 2-o-sulfotransferase2 from gallus gallus as a maltose binding protein fusion. Phyre2 PDB 3ob4 chain A Region: 27 - 395 Aligned: 369 Modelled: 369 Confidence: 100.0% Identity: 97% PDB header:allergen Chain: A: PDB Molecule:maltose abc transporter periplasmic protein, arah 2; PDBTitle: mbp-fusion protein of the major peanut allergen ara h 2 Phyre2 PDB 1hsj chain A Region: 27 - 396 Aligned: 370 Modelled: 370 Confidence: 100.0% Identity: 98% PDB header:transcription/sugar binding protein Chain: A: PDB Molecule:fusion protein consisting of staphylococcus PDBTitle: sarr mbp fusion structure Phyre2 PDB 3c4m chain A Region: 26 - 395 Aligned: 370 Modelled: 370 Confidence: 100.0% Identity: 99% PDB header:membrane protein Chain: A: PDB Molecule:fusion protein of maltose-binding periplasmic protein and PDBTitle: structure of human parathyroid hormone in complex with the2 extracellular domain of its g-protein-coupled receptor (pth1r) Phyre2 PDB 3oai chain B Region: 27 - 394 Aligned: 368 Modelled: 368 Confidence: 100.0% Identity: 100% PDB header:membrane protein, cell adhesion Chain: B: PDB Molecule:maltose-binding periplasmic protein, myelin protein p0; PDBTitle: crystal structure of the extra-cellular domain of human myelin protein2 zero Phyre2 PDB 1r6z chain A Region: 29 - 395 Aligned: 367 Modelled: 367 Confidence: 100.0% Identity: 99% PDB header:gene regulation Chain: A: PDB Molecule:chimera of maltose-binding periplasmic protein and PDBTitle: the crystal structure of the argonaute2 paz domain (as a mbp fusion) Phyre2 PDB 3dm0 chain A Region: 27 - 395 Aligned: 369 Modelled: 369 Confidence: 100.0% Identity: 98% PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana Phyre2 PDB 3mp6 chain A Region: 27 - 395 Aligned: 369 Modelled: 369 Confidence: 100.0% Identity: 99% PDB header:histone binding protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, linker, saga- PDBTitle: complex structure of sgf29 and dimethylated h3k4 Phyre2 PDB 3py7 chain A Region: 29 - 395 Aligned: 367 Modelled: 367 Confidence: 100.0% Identity: 98% PDB header:viral protein Chain: A: PDB Molecule:maltose-binding periplasmic protein,paxillin ld1,protein e6 PDBTitle: crystal structure of full-length bovine papillomavirus oncoprotein e62 in complex with ld1 motif of paxillin at 2.3a resolution Phyre2 PDB 3d4c chain A Region: 30 - 395 Aligned: 366 Modelled: 366 Confidence: 100.0% Identity: 98% PDB header:cell adhesion Chain: A: PDB Molecule:maltose-binding periplasmic protein, linker, zona pellucida PDBTitle: zp-n domain of mammalian sperm receptor zp3 (crystal form i) Phyre2 PDB 3csg chain A Region: 32 - 396 Aligned: 365 Modelled: 365 Confidence: 100.0% Identity: 100% PDB header:de novo protein, sugar binding protein Chain: A: PDB Molecule:maltose-binding protein monobody ys1 fusion; PDBTitle: crystal structure of monobody ys1(mbp-74)/maltose binding2 protein fusion complex Phyre2 PDB 3o3u chain N Region: 29 - 396 Aligned: 368 Modelled: 368 Confidence: 100.0% Identity: 98% PDB header:transport protein, signaling protein Chain: N: PDB Molecule:maltose-binding periplasmic protein, advanced glycosylation PDBTitle: crystal structure of human receptor for advanced glycation endproducts2 (rage) Phyre2 PDB 1y4c chain A Region: 30 - 396 Aligned: 367 Modelled: 367 Confidence: 100.0% Identity: 99% PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp Phyre2 PDB 2vgq chain A Region: 29 - 396 Aligned: 368 Modelled: 368 Confidence: 100.0% Identity: 99% PDB header:immune system/transport Chain: A: PDB Molecule:maltose-binding periplasmic protein, PDBTitle: crystal structure of human ips-1 card Phyre2 PDB 2nvu chain B Region: 27 - 395 Aligned: 357 Modelled: 369 Confidence: 100.0% Identity: 97% PDB header:protein turnover, ligase Chain: B: PDB Molecule:maltose binding protein/nedd8-activating enzyme PDBTitle: structure of appbp1-uba3~nedd8-nedd8-mgatp-ubc12(c111a), a2 trapped ubiquitin-like protein activation complex Phyre2 PDB 1mg1 chain A Region: 31 - 396 Aligned: 366 Modelled: 366 Confidence: 100.0% Identity: 98% PDB header:viral protein Chain: A: PDB Molecule:protein (htlv-1 gp21 ectodomain/maltose-binding protein PDBTitle: htlv-1 gp21 ectodomain/maltose-binding protein chimera Phyre2 PDB 3ehu chain A Region: 27 - 396 Aligned: 361 Modelled: 370 Confidence: 100.0% Identity: 98% PDB header:membrane protein Chain: A: PDB Molecule:fusion protein of crfr1 extracellular domain and mbp; PDBTitle: crystal structure of the extracellular domain of human corticotropin2 releasing factor receptor type 1 (crfr1) in complex with crf Phyre2 PDB 3iou chain B Region: 27 - 395 Aligned: 369 Modelled: 369 Confidence: 100.0% Identity: 98% PDB header:signaling protein Chain: B: PDB Molecule:maltose-binding protein, huntingtin fusion PDBTitle: huntingtin amino-terminal region with 17 gln residues -2 crystal c94 Phyre2 1 c3osqA_ 2 c3h4zC_ 3 c3f5fA_ 4 c3ob4A_ 5 c1hsjA_ 6 c3c4mA_ 7 c3oaiB_ 8 c1r6zA_ 9 c3dm0A_ 10 c3mp6A_ 11 c3py7A_ 12 c3d4cA_ 13 c3csgA_ 14 c3o3uN_ 15 c1y4cA_ 16 c2vgqA_ 17 c2nvuB_ 18 c1mg1A_ 19 c3ehuA_ 20 c3iouB_ 21 22 23 24 25 26 27 28 29 30 31 32 33 34 35 36 37 38 39 40 41 42 43 44 45 46 47 48 49 50 51 52 53 54 55 56 57 58 59 60 61 62 63 64 65 66 67 68 69 70 71 72 73 74 75 76 77 78 79 80 81 82 83 84 85 86 87 88 89 90 91 92 93 94 95 96 97 98 99 100 101 102 103

Detailed template information

# Template Alignment Coverage 3D Model Confidence % i.d. Template Information

1 c3osqA_ 100.0 100 PDB header:fluorescent protein, transport protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, green fluorescent PDBTitle: maltose-bound maltose sensor engineered by insertion of circularly2 permuted green fluorescent protein into e. coli maltose binding3 protein at position 175 2 c3h4zC_ 100.0 97 PDB header:allergen Chain: C: PDB Molecule:maltose-binding periplasmic protein fused with allergen PDBTitle: crystal structure of an mbp-der p 7 fusion protein 3 c3f5fA_ 100.0 98 PDB header:transport, transferase Chain: A: PDB Molecule:maltose-binding periplasmic protein, heparan PDBTitle: crystal structure of heparan sulfate 2-o-sulfotransferase2 from gallus gallus as a maltose binding protein fusion. 4 c3ob4A_ 100.0 97 PDB header:allergen Chain: A: PDB Molecule:maltose abc transporter periplasmic protein, arah 2; PDBTitle: mbp-fusion protein of the major peanut allergen ara h 2 5 c1hsjA_ 100.0 98 PDB header:transcription/sugar binding protein Chain: A: PDB Molecule:fusion protein consisting of staphylococcus PDBTitle: sarr mbp fusion structure 6 c3c4mA_ 100.0 99 PDB header:membrane protein Chain: A: PDB Molecule:fusion protein of maltose-binding periplasmic protein and PDBTitle: structure of human parathyroid hormone in complex with the2 extracellular domain of its g-protein-coupled receptor (pth1r) 7 c3oaiB_ 100.0 100 PDB header:membrane protein, cell adhesion Chain: B: PDB Molecule:maltose-binding periplasmic protein, myelin protein p0; PDBTitle: crystal structure of the extra-cellular domain of human myelin protein2 zero 8 c1r6zA_ 100.0 99 PDB header:gene regulation Chain: A: PDB Molecule:chimera of maltose-binding periplasmic protein and PDBTitle: the crystal structure of the argonaute2 paz domain (as a mbp fusion) 9 c3dm0A_ 100.0 98 PDB header:sugar binding protein,signaling protein Chain: A: PDB Molecule:maltose-binding periplasmic protein fused with PDBTitle: maltose binding protein fusion with rack1 from a. thaliana 10 c3mp6A_ 100.0 99 PDB header:histone binding protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, linker, saga- PDBTitle: complex structure of sgf29 and dimethylated h3k4 11 c3py7A_ 100.0 98 PDB header:viral protein Chain: A: PDB Molecule:maltose-binding periplasmic protein,paxillin ld1,protein e6 PDBTitle: crystal structure of full-length bovine papillomavirus oncoprotein e62 in complex with ld1 motif of paxillin at 2.3a resolution 12 c3d4cA_ 100.0 98 PDB header:cell adhesion Chain: A: PDB Molecule:maltose-binding periplasmic protein, linker, zona pellucida PDBTitle: zp-n domain of mammalian sperm receptor zp3 (crystal form i) 13 c3csgA_ 100.0 100 PDB header:de novo protein, sugar binding protein Chain: A: PDB Molecule:maltose-binding protein monobody ys1 fusion; PDBTitle: crystal structure of monobody ys1(mbp-74)/maltose binding2 protein fusion complex 14 c3o3uN_ 100.0 98 PDB header:transport protein, signaling protein Chain: N: PDB Molecule:maltose-binding periplasmic protein, advanced glycosylation PDBTitle: crystal structure of human receptor for advanced glycation endproducts2 (rage) 15 c1y4cA_ 100.0 99 PDB header:de novo protein Chain: A: PDB Molecule:maltose binding protein fused with designed PDBTitle: designed helical protein fusion mbp 16 c2vgqA_ 100.0 99 PDB header:immune system/transport Chain: A: PDB Molecule:maltose-binding periplasmic protein, PDBTitle: crystal structure of human ips-1 card 17 c2nvuB_ 100.0 97 PDB header:protein turnover, ligase Chain: B: PDB Molecule:maltose binding protein/nedd8-activating enzyme PDBTitle: structure of appbp1-uba3~nedd8-nedd8-mgatp-ubc12(c111a), a2 trapped ubiquitin-like protein activation complex 18 c1mg1A_ 100.0 98 PDB header:viral protein Chain: A: PDB Molecule:protein (htlv-1 gp21 ectodomain/maltose-binding protein PDBTitle: htlv-1 gp21 ectodomain/maltose-binding protein chimera 19 c3ehuA_ 100.0 98 PDB header:membrane protein Chain: A: PDB Molecule:fusion protein of crfr1 extracellular domain and mbp; PDBTitle: crystal structure of the extracellular domain of human corticotropin2 releasing factor receptor type 1 (crfr1) in complex with crf 20 c3iouB_ 100.0 98 PDB header:signaling protein Chain: B: PDB Molecule:maltose-binding protein, huntingtin fusion PDBTitle: huntingtin amino-terminal region with 17 gln residues -2 crystal c94 21 c1svxB_ not modelled 100.0 99 PDB header:de novo protein/sugar binding protein Chain: B: PDB Molecule:maltose-binding periplasmic protein; PDBTitle: crystal structure of a designed selected ankyrin repeat2 protein in complex with the maltose binding protein 22 d1laxa_ not modelled 100.0 99 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 23 c1mh3A_ not modelled 100.0 98 PDB header:sugar binding, dna binding protein Chain: A: PDB Molecule:maltose binding-a1 homeodomain protein chimera; PDBTitle: maltose binding-a1 homeodomain protein chimera, crystal2 form i 24 c2zykA_ not modelled 100.0 28 PDB header:sugar binding protein Chain: A: PDB Molecule:solute-binding protein; PDBTitle: crystal structure of cyclo/maltodextrin-binding protein2 complexed with gamma-cyclodextrin 25 c3osrA_ not modelled 100.0 98 PDB header:fluorescent protein, transport protein Chain: A: PDB Molecule:maltose-binding periplasmic protein, green fluorescent PDBTitle: maltose-bound maltose sensor engineered by insertion of circularly2 permuted green fluorescent protein into e. coli maltose binding3 protein at position 311 26 d1elja_ not modelled 100.0 27 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 27 c2gh9A_ not modelled 100.0 29 PDB header:sugar binding protein Chain: A: PDB Molecule:maltose/maltodextrin-binding protein; PDBTitle: thermus thermophilus maltotriose binding protein bound with2 maltotriose 28 c2fncA_ not modelled 100.0 34 PDB header:sugar binding protein Chain: A: PDB Molecule:maltose abc transporter, periplasmic maltose-binding PDBTitle: thermotoga maritima maltotriose binding protein bound with2 maltotriose. 29 c3uorB_ not modelled 100.0 20 PDB header:sugar binding protein Chain: B: PDB Molecule:abc transporter sugar binding protein; PDBTitle: the structure of the sugar-binding protein male from the phytopathogen2 xanthomonas citri 30 d1ursa_ not modelled 100.0 28 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 31 c1ursA_ not modelled 100.0 28 PDB header:maltose-binding protein Chain: A: PDB Molecule:maltose-binding protein; PDBTitle: x-ray structures of the maltose-maltodextrin binding2 protein of the thermoacidophilic bacterium alicyclobacillus3 acidocaldarius 32 c2xd3A_ not modelled 100.0 25 PDB header:sugar binding protein Chain: A: PDB Molecule:maltose/maltodextrin-binding protein; PDBTitle: the crystal structure of malx from streptococcus pneumoniae2 in complex with maltopentaose. 33 c3k02A_ not modelled 100.0 21 PDB header:transport protein Chain: A: PDB Molecule:acarbose/maltose binding protein gach; PDBTitle: crystal structures of the gach receptor of streptomyces glaucescens2 gla.o in the unliganded form and in complex with acarbose and an3 acarbose homolog. comparison with acarbose-loaded maltose binding4 protein of salmonella typhimurium. 34 d1eu8a_ not modelled 100.0 22 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 35 c3qufB_ not modelled 100.0 17 PDB header:transport protein Chain: B: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: the structure of a family 1 extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis 36 c2uvgA_ not modelled 100.0 18 PDB header:sugar-binding protein Chain: A: PDB Molecule:abc type periplasmic sugar-binding protein; PDBTitle: structure of a periplasmic oligogalacturonide binding2 protein from yersinia enterocolitica 37 c2z8fB_ not modelled 100.0 19 PDB header:sugar binding protein Chain: B: PDB Molecule:galacto-n-biose/lacto-n-biose i transporter substrate- PDBTitle: the galacto-n-biose-/lacto-n-biose i-binding protein (gl-bp) of the2 abc transporter from bifidobacterium longum in complex with lacto-n-3 tetraose 38 c3oo6A_ not modelled 100.0 14 PDB header:sugar binding protein Chain: A: PDB Molecule:abc transporter binding protein acbh; PDBTitle: crystal structures and biochemical characterization of the bacterial2 solute receptor acbh reveal an unprecedented exclusive substrate3 preference for b-d-galactopyranose 39 c2b3fD_ not modelled 100.0 15 PDB header:sugar binding protein Chain: D: PDB Molecule:glucose-binding protein; PDBTitle: thermus thermophilus glucose/galactose binding protein2 bound with galactose 40 c3i3vC_ not modelled 100.0 15 PDB header:transport protein Chain: C: PDB Molecule:probable secreted solute-binding lipoprotein; PDBTitle: crystal structure of probable secreted solute-binding2 lipoprotein from streptomyces coelicolor 41 c2w7yA_ not modelled 100.0 16 PDB header:sugar-binding protein Chain: A: PDB Molecule:probable sugar abc transporter, sugar-binding PDBTitle: structure of a streptococcus pneumoniae solute-binding2 protein in complex with the blood group a-trisaccharide. 42 c2i58B_ not modelled 100.0 20 PDB header:sugar binding protein Chain: B: PDB Molecule:sugar abc transporter, sugar-binding protein; PDBTitle: crystal structure of rafe from streptococcus pneumoniae complexed with2 raffinose 43 d1y3na1 not modelled 100.0 15 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 44 d1j1na_ not modelled 100.0 15 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 45 d3thia_ not modelled 100.0 15 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 46 d1a99a_ not modelled 100.0 18 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 47 d1pota_ not modelled 100.0 16 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 48 c2v84A_ not modelled 100.0 14 PDB header:transport protein Chain: A: PDB Molecule:spermidine/putrescine abc transporter, periplasmic PDBTitle: crystal structure of the tp0655 (tppotd) lipoprotein of2 treponema pallidum 49 c3ombA_ not modelled 100.0 15 PDB header:transport protein Chain: A: PDB Molecule:extracellular solute-binding protein, family 1; PDBTitle: crystal structure of extracellular solute-binding protein from2 bifidobacterium longum subsp. infantis 50 c3rpwA_ not modelled 100.0 19 PDB header:transport protein Chain: A: PDB Molecule:abc transporter; PDBTitle: the crystal structure of an abc transporter from rhodopseudomonas2 palustris cga009 51 c3pu5A_ not modelled 100.0 15 PDB header:transport protein Chain: A: PDB Molecule:extracellular solute-binding protein; PDBTitle: the crystal structure of a putative extracellular solute-binding2 protein from bordetella parapertussis 52 c3c9hB_ not modelled 100.0 14 PDB header:transport protein Chain: B: PDB Molecule:abc transporter, substrate binding protein; PDBTitle: crystal structure of the substrate binding protein of the abc2 transporter from agrobacterium tumefaciens 53 c2pt1A_ not modelled 100.0 18 PDB header:metal transport Chain: A: PDB Molecule:iron transport protein; PDBTitle: futa1 synechocystis pcc 6803 54 d1y4ta_ not modelled 100.0 19 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 55 d1q35a_ not modelled 100.0 16 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 56 d1xvxa_ not modelled 100.0 20 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 57 d1y9ua_ not modelled 100.0 16 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 58 c2qryD_ not modelled 100.0 16 PDB header:transport protein Chain: D: PDB Molecule:thiamine-binding periplasmic protein; PDBTitle: periplasmic thiamin binding protein 59 d1xc1a_ not modelled 100.0 16 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 60 d1nnfa_ not modelled 100.0 21 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 61 d1xvya_ not modelled 100.0 19 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 62 c2vozA_ not modelled 100.0 15 PDB header:metal-binding protein Chain: A: PDB Molecule:periplasmic iron-binding protein; PDBTitle: apo futa2 from synechocystis pcc6803 63 d2onsa1 not modelled 100.0 12 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 64 c3cfzA_ not modelled 99.9 12 PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein mj1186; PDBTitle: crystal structure of m. jannaschii periplasmic binding2 protein moda/wtpa with bound tungstate 65 c3cfxA_ not modelled 99.9 12 PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein ma_0280; PDBTitle: crystal structure of m. acetivorans periplasmic binding protein2 moda/wtpa with bound tungstate 66 c3k6wA_ not modelled 99.9 9 PDB header:transport protein Chain: A: PDB Molecule:solute-binding protein ma_0280; PDBTitle: apo and ligand bound structures of moda from the archaeon2 methanosarcina acetivorans 67 c3cg1A_ not modelled 99.9 15 PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein pf0080; PDBTitle: crystal structure of p. furiosus periplasmic binding protein2 moda/wtpa with bound tungstate 68 c3cg3A_ not modelled 99.9 15 PDB header:transport protein Chain: A: PDB Molecule:upf0100 protein ph0151; PDBTitle: crystal structure of p. horikoshii periplasmic binding2 protein moda/wtpa with bound tungstate 69 d1sbpa_ not modelled 99.8 16 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 70 d1atga_ not modelled 99.6 13 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 71 d1amfa_ not modelled 99.5 15 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 72 c2h5yC_ not modelled 99.4 16 PDB header:metal transport Chain: C: PDB Molecule:molybdate-binding periplasmic protein; PDBTitle: crystallographic structure of the molybdate-binding protein of2 xanthomonas citri at 1.7 ang resolution bound to molybdate 73 c3fj7A_ not modelled 99.3 17 PDB header:protein binding Chain: A: PDB Molecule:major antigenic peptide peb3; PDBTitle: crystal structure of l-phospholactate bound peb3 74 c3lr1A_ not modelled 99.2 13 PDB header:transport protein Chain: A: PDB Molecule:tungstate abc transporter, periplasmic tungstate- PDBTitle: the crystal structure of the tungstate abc transporter from2 geobacter sulfurreducens 75 c3muqB_ not modelled 99.1 16 PDB header:structural genomics, unknown function Chain: B: PDB Molecule:uncharacterized conserved protein; PDBTitle: the crystal structure of a conserved functionally unknown protein from2 vibrio parahaemolyticus rimd 2210633 76 c3kn3C_ not modelled 98.9 10 PDB header:transcription Chain: C: PDB Molecule:putative periplasmic protein; PDBTitle: crystal structure of lysr substrate binding domain (25-263) of2 putative periplasmic protein from wolinella succinogenes 77 c1twyG_ not modelled 98.7 11 PDB header:structural genomics, unknown function Chain: G: PDB Molecule:abc transporter, periplasmic substrate-binding protein; PDBTitle: crystal structure of an abc-type phosphate transport receptor from2 vibrio cholerae 78 d1twya_ not modelled 98.7 11 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 79 c3k2dA_ not modelled 93.5 9 PDB header:immune system Chain: A: PDB Molecule:abc-type metal ion transport system, periplasmic component; PDBTitle: crystal structure of immunogenic lipoprotein a from vibrio vulnificus 80 c3ir1F_ not modelled 84.6 10 PDB header:protein binding Chain: F: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of lipoprotein gna1946 from neisseria2 meningitidis 81 c3cvgC_ not modelled 83.2 21 PDB header:metal binding protein Chain: C: PDB Molecule:putative metal binding protein; PDBTitle: crystal structure of a periplasmic putative metal binding protein 82 c3gxaA_ not modelled 80.8 10 PDB header:protein binding Chain: A: PDB Molecule:outer membrane lipoprotein gna1946; PDBTitle: crystal structure of gna1946 83 d1pc3a_ not modelled 76.7 8 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 84 c3e4rA_ not modelled 71.7 15 PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein; PDBTitle: crystal structure of the alkanesulfonate binding protein2 (ssua) from the phytopathogenic bacteria xanthomonas3 axonopodis pv. citri bound to hepes 85 d1xs5a_ not modelled 67.9 12 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 86 c3tqwA_ not modelled 65.9 6 PDB header:transport protein Chain: A: PDB Molecule:methionine-binding protein; PDBTitle: structure of a abc transporter, periplasmic substrate-binding protein2 from coxiella burnetii 87 c2x7pA_ not modelled 56.3 10 PDB header:unknown function Chain: A: PDB Molecule:possible thiamine biosynthesis enzyme; PDBTitle: the conserved candida albicans ca3427 gene product defines a new2 family of proteins exhibiting the generic periplasmic binding3 protein structural fold 88 c2x26A_ not modelled 53.0 14 PDB header:transport protein Chain: A: PDB Molecule:periplasmic aliphatic sulphonates-binding protein; PDBTitle: crystal structure of the periplasmic aliphatic sulphonate2 binding protein ssua from escherichia coli 89 c3ix1A_ not modelled 48.2 11 PDB header:biosynthetic protein Chain: A: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans 90 c3ix1B_ not modelled 48.2 11 PDB header:biosynthetic protein Chain: B: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans 91 c2dvzA_ not modelled 38.6 11 PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of a periplasmic transporter 92 d1p99a_ not modelled 38.1 17 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 93 c1p99A_ not modelled 38.1 17 PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein pg110; PDBTitle: 1.7a crystal structure of protein pg110 from staphylococcus2 aureus 94 d2pp4a1 not modelled 33.4 21 Fold:TAFH domain-like Superfamily:TAFH domain-like Family:TAFH domain-like 95 c3hhfB_ not modelled 30.3 18 PDB header:transcription regulator Chain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: structure of crga regulatory domain, a lysr-type transcriptional2 regulator from neisseria meningitidis. 96 d1ixha_ not modelled 28.3 17 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 97 c3mz1D_ not modelled 27.8 18 PDB header:transcription regulator Chain: D: PDB Molecule:putative transcriptional regulator; PDBTitle: the crystal structure of a possible transcription regulator protein2 from sinorhizobium meliloti 1021 98 c3n6uA_ not modelled 25.4 13 PDB header:transcription regulator Chain: A: PDB Molecule:lysr type regulator of tsambcd; PDBTitle: effector binding domain of tsar in complex with its inducer p-2 toluenesulfonate 99 c3l6gA_ not modelled 25.3 16 PDB header:glycine betaine-binding protein Chain: A: PDB Molecule:betaine abc transporter permease and substrate binding PDBTitle: crystal structure of lactococcal opuac in its open conformation 100 c2hpgB_ not modelled 24.1 19 PDB header:ligand binding protein Chain: B: PDB Molecule:abc transporter, periplasmic substrate-binding PDBTitle: the crystal structure of a thermophilic trap periplasmic2 binding protein 101 d2esna2 not modelled 22.3 7 Fold:Periplasmic binding protein-like II Superfamily:Periplasmic binding protein-like II Family:Phosphate binding protein-like 102 c2pjuD_ not modelled 21.9 18 PDB header:transcription Chain: D: PDB Molecule:propionate catabolism operon regulatory protein; PDBTitle: crystal structure of propionate catabolism operon2 regulatory protein prpr 103 c1al3A_ not modelled 21.8 13 PDB header:transcription regulation Chain: A: PDB Molecule:cys regulon transcriptional activator cysb; PDBTitle: cofactor binding fragment of cysb from klebsiella aerogenes

Binding site prediction

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group Imperial College London Lawrence Kelley, Benjamin Jefferys Disclaimer Terms and Conditions	Component software Template detection: HHpred 1.51 Secondary structure prediction: Psi-pred 2.5 Disorder prediction: Disopred 2.4 Transmembrane prediction: Memsat_SVM Multi-template modelling and ab initio: Poing 1.0