BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (318 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0AFY0 Sigma-E factor regulatory protein rseB n=161 Tax... 650 0.0 UniRef50_Q7N1X1 Sigma-E factor regulatory protein RseB n=8 Tax=E... 342 1e-92 UniRef50_B4F051 Anti sigma E (Sigma 24) factor, negative regulat... 300 4e-80 UniRef50_C4K3Z0 Anti sigma E (Sigma 24) factor, negative regulat... 288 1e-76 UniRef50_Q7MHN3 Negative regulator of sigma E activity n=68 Tax=... 286 6e-76 UniRef50_Q65QC3 RseB protein n=2 Tax=Pasteurellaceae RepID=Q65QC... 234 3e-60 UniRef50_P44792 Sigma-E factor regulatory protein rseB homolog n... 232 2e-59 UniRef50_A6VKY3 Sigma E regulatory protein, MucB/RseB n=1 Tax=Ac... 226 6e-58 UniRef50_B8F3K5 Periplasmic negative regulator of sigmaE n=2 Tax... 212 1e-53 UniRef50_C5S2D4 Periplasmic negative regulator of sigmaE n=2 Tax... 203 6e-51 UniRef50_A0KGE8 Sigma-E factor regulatory protein RseB n=2 Tax=A... 177 5e-43 UniRef50_A7JWL1 Sigma E regulator RseB n=3 Tax=Pasteurellaceae R... 174 3e-42 UniRef50_Q3IDL6 Putative anti sigma E (Sigma 24) factor, negativ... 172 1e-41 UniRef50_A6FDN5 Sigma-E factor regulatory protein RseB n=1 Tax=M... 169 9e-41 UniRef50_Q47WP0 Sigma-E factor regulatory protein RseB n=1 Tax=C... 169 1e-40 UniRef50_A1SR26 Sigma E regulatory protein, MucB/RseB n=2 Tax=Ps... 167 5e-40 UniRef50_A3WPR5 Negative regulator of sigma E activity n=1 Tax=I... 159 1e-37 UniRef50_Q15R29 Sigma E regulatory protein, MucB/RseB n=1 Tax=Ps... 158 3e-37 UniRef50_B4RVL6 Putative anti sigma E (Sigma 24) factor, negativ... 157 6e-37 UniRef50_UPI0001AEB8D1 putative anti sigma E (sigma 24) factor, ... 155 1e-36 UniRef50_C4LBZ4 Sigma E regulatory protein, MucB/RseB n=1 Tax=To... 150 6e-35 UniRef50_UPI0000E11523 putative anti sigma E (sigma 24) factor, ... 144 5e-33 UniRef50_Q5R102 Negative regulator of sigma E activity n=1 Tax=I... 140 6e-32 UniRef50_Q07YZ2 Sigma E regulatory protein, MucB/RseB n=22 Tax=S... 135 2e-30 UniRef50_Q2SL38 Sigma factor algU negative regulatory protein Mu... 118 3e-25 UniRef50_Q0VP13 Negative regulator for alginate biosynthesis n=2... 115 2e-24 UniRef50_B5JX06 MucB/RseB n=1 Tax=gamma proteobacterium HTCC5015... 112 1e-23 UniRef50_Q1N1C1 Sigma factor algU negative regulatory protein Mu... 107 7e-22 UniRef50_Q2SXT9 Sigma factor algU regulatory protein MucB n=56 T... 103 1e-20 UniRef50_C0N4S1 MucB/RseB family n=1 Tax=Methylophaga thiooxidan... 100 1e-19 UniRef50_A4BRZ0 MucB/RseB n=1 Tax=Nitrococcus mobilis Nb-231 Rep... 100 1e-19 UniRef50_C5V4B6 Sigma E regulatory protein, MucB/RseB n=1 Tax=Ga... 99 1e-19 UniRef50_Q1YS35 MucB/RseB n=1 Tax=gamma proteobacterium HTCC2207... 99 2e-19 UniRef50_Q608M1 Putative sigma-E factor regulatory protein n=1 T... 99 3e-19 UniRef50_C6X6N7 Sigma E regulatory protein, MucB/RseB n=2 Tax=Me... 98 4e-19 UniRef50_C5SBU2 Sigma E regulatory protein, MucB/RseB n=1 Tax=Al... 96 1e-18 UniRef50_D0WVV8 Sigma-E factor regulatory protein rseB n=1 Tax=V... 96 2e-18 UniRef50_Q6SFI4 MucB/RseB family protein n=1 Tax=uncultured mari... 95 3e-18 UniRef50_B8GPK4 Sigma E regulatory protein, MucB/RseB n=1 Tax=Th... 94 7e-18 UniRef50_A0YCK6 Sigma factor algU negative regulatory protein Mu... 94 8e-18 UniRef50_A1WT21 Sigma E regulatory protein, MucB/RseB n=1 Tax=Ha... 94 8e-18 UniRef50_A6SXQ7 Sigma-E factor negative regulatory protein RseB ... 93 1e-17 UniRef50_P38108 Sigma factor algU regulatory protein mucB n=27 T... 92 2e-17 UniRef50_B3PJ99 Sigma factor algU regulatory protein MucB n=1 Ta... 92 4e-17 UniRef50_Q1H2L7 Sigma E regulatory protein, MucB/RseB n=1 Tax=Me... 91 5e-17 UniRef50_A6VUA2 Sigma E regulatory protein, MucB/RseB n=1 Tax=Ma... 91 8e-17 UniRef50_Q3SH43 Putative Sigma E regulatory protein, MucB/RseB n... 89 2e-16 UniRef50_Q0PQN8 MucB (Fragment) n=1 Tax=Endoriftia persephone 'H... 89 2e-16 UniRef50_Q3J8C9 Sigma E regulatory protein, MucB/RseB n=2 Tax=Ni... 89 2e-16 UniRef50_A1U2X0 Sigma E regulatory protein, MucB/RseB n=3 Tax=Ma... 87 6e-16 UniRef50_Q0A8Z7 Sigma E regulatory protein, MucB/RseB n=1 Tax=Al... 87 1e-15 UniRef50_A3Y8F0 MucB/RseB n=1 Tax=Marinomonas sp. MED121 RepID=A... 86 2e-15 UniRef50_C6P3S1 Sigma E regulatory protein, MucB/RseB n=1 Tax=Si... 85 4e-15 UniRef50_A4BBJ2 Sigma factor algU negative regulatory protein Mu... 85 4e-15 UniRef50_Q7NWD0 Negative regulator for alginate biosynthesis Muc... 84 9e-15 UniRef50_Q2Y876 Sigma E regulatory protein, MucB/RseB n=2 Tax=Ni... 82 2e-14 UniRef50_C1DQR7 Sigma factor algU negative regulatory protein Mu... 81 5e-14 UniRef50_C4ZKS3 Sigma E regulatory protein, MucB/RseB n=3 Tax=Rh... 80 7e-14 UniRef50_Q0K8M7 Negative regulator of sigma24 activity n=10 Tax=... 79 1e-13 UniRef50_A2SDG7 Sigma E regulatory protein, MucB/RseB n=1 Tax=Me... 79 2e-13 UniRef50_B6BUK0 Sigma E regulatory protein, MucB/RseB, putative ... 78 4e-13 UniRef50_C7HX17 Putative sigma E regulatory protein, MucB/RseB n... 72 2e-11 UniRef50_C5BRN0 Putative sigma E regulatory protein, MucB/RseB n... 72 2e-11 UniRef50_C5CSF0 Putative sigma E regulatory protein, MucB/RseB n... 72 3e-11 UniRef50_B8KFV0 Putative negative regulator for alginate biosynt... 72 3e-11 UniRef50_B7RX56 MucB/RseB family protein n=1 Tax=marine gamma pr... 72 3e-11 UniRef50_Q126J7 Putative sigma E regulatory protein, MucB/RseB n... 72 3e-11 UniRef50_UPI0000E87AE1 Putative Sigma E regulatory protein, MucB... 71 4e-11 UniRef50_B9Z3B1 Putative sigma E regulatory protein, MucB/RseB n... 70 7e-11 UniRef50_Q21IH0 Negative regulator of sigma E activity-like prot... 70 1e-10 UniRef50_A1WMW7 Sigma E regulatory protein, MucB/RseB n=5 Tax=Co... 69 2e-10 UniRef50_B9ZJG1 Sigma E regulatory protein, MucB/RseB n=1 Tax=Th... 68 4e-10 UniRef50_Q2KW13 Sigma-E factor regulatory protein n=5 Tax=Bordet... 63 2e-08 UniRef50_A4A3V1 MucB/RseB family protein n=1 Tax=Congregibacter ... 62 4e-08 UniRef50_A6GP47 Sigma E regulatory protein, MucB/RseB n=1 Tax=Li... 59 2e-07 UniRef50_B8KRG2 Negative regulator for alginate biosynthesis n=1... 58 5e-07 UniRef50_A1TLE5 Putative sigma E regulatory protein, MucB/RseB n... 57 1e-06 UniRef50_B1XZN2 Putative sigma E regulatory protein, MucB/RseB n... 52 3e-05 UniRef50_A0Z442 Sigma factor algU regulatory protein AlgN n=1 Ta... 50 9e-05 >UniRef50_P0AFY0 Sigma-E factor regulatory protein rseB n=161 Tax=Enterobacteriaceae RepID=RSEB_ECO57 Length = 318 Score = 650 bits (1678), Expect = 0.0, Method: Compositional matrix adjust. Identities = 318/318 (100%), Positives = 318/318 (100%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY Sbjct: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK Sbjct: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL Sbjct: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRP 240 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRP Sbjct: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRP 240 Query: 241 LPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGEL 300 LPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGEL Sbjct: 241 LPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGEL 300 Query: 301 PPQTAKRIAENIKFGAAQ 318 PPQTAKRIAENIKFGAAQ Sbjct: 301 PPQTAKRIAENIKFGAAQ 318 >UniRef50_Q7N1X1 Sigma-E factor regulatory protein RseB n=8 Tax=Enterobacteriaceae RepID=Q7N1X1_PHOLL Length = 318 Score = 342 bits (876), Expect = 1e-92, Method: Compositional matrix adjust. Identities = 164/319 (51%), Positives = 230/319 (72%), Gaps = 4/319 (1%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASG-ALLQQMNLASQSLNYELSFISINKQGVESLR 59 MK++WF++ L+ GSL ASA +S LLQ+M A++SL YEL+FI++N Q + S+R Sbjct: 1 MKRIWFSVCLLAGSLFAPLQASAQLSSAEVLLQEMGNATRSLTYELAFINLNPQAIVSVR 60 Query: 60 YRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDF 119 YRHA ++ P+AQ++QMDG RREVVQRGNEISYFEPGL+ F+L+G++I+D LP++I+ DF Sbjct: 61 YRHAIINGIPIAQIMQMDGSRREVVQRGNEISYFEPGLDAFSLSGNHIIDYLPAVIFADF 120 Query: 120 KRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGET 179 +L YY+FI VGRT I DR C V+R+ ++D RY+YI+ +D E+ LP+R+DLLDRD E Sbjct: 121 NQLKKYYNFIDVGRTHIGDRPCRVVRITSKDEVRYNYILLIDEETHLPLRIDLLDRDSEA 180 Query: 180 LEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRR 239 LEQFRV++ ++ DI+ +M + + N+PP+L +P EK F+W LP GF EVS SRR Sbjct: 181 LEQFRVVSSTIDGDINDAMSVITRLNMPPMLVIPPSEKVVFNWKVGKLPIGFVEVSRSRR 240 Query: 240 PLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQM-LRTGRRTVSTSVRDNAEITIVG 298 LP ++ +ES ++SDGLFSFSVNV A + + LR G RT+ +++R E+TI+G Sbjct: 241 KLP--NSGTLESVMFSDGLFSFSVNVTNADKTGKLEYPLRRGARTIYSAIRGANEVTIIG 298 Query: 299 ELPPQTAKRIAENIKFGAA 317 ELP TAKRIA + F A Sbjct: 299 ELPLATAKRIAAGVAFIGA 317 >UniRef50_B4F051 Anti sigma E (Sigma 24) factor, negative regulator (Sigma-e factor regulatory protein) n=3 Tax=Enterobacteriaceae RepID=B4F051_PROMH Length = 323 Score = 300 bits (768), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 151/322 (46%), Positives = 213/322 (66%), Gaps = 10/322 (3%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASG---ALLQQMNLASQSLNYELSFISINKQGVES 57 MK+ W + L+ G L A A P G ALLQ+M +Q+ YELSFI+IN QG+ Sbjct: 1 MKKSWLSALLLAGYLSIPTQALAQPQIGNAEALLQKMGNTTQTATYELSFININSQGIVP 60 Query: 58 LRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYT 117 +RYRHA +D +P+AQL+QMD RRE+VQRGNEISYFEPGL+ F+L ++IVD LP++IY Sbjct: 61 IRYRHALVDGKPVAQLMQMDSTRREIVQRGNEISYFEPGLDAFSLRNEHIVDYLPAIIYQ 120 Query: 118 DFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDG 177 +F L+ YY+FI GRT I D V+RV++++ RY Y++++D E LP+RVDLLD++ Sbjct: 121 NFAELAEYYNFIDAGRTHIGDIPSRVVRVLSKNNDRYEYVLFIDEERYLPLRVDLLDKNN 180 Query: 178 ETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKA-KFSWTPTWLPQGFSEVSS 236 + +EQFRVI N N++I S + +L K N+PPLL +P +A ++W T LP+GF EV Sbjct: 181 DVIEQFRVITANQNKEIISELDSLNKVNMPPLLLIPKATQALNYNWRVTTLPEGFKEVKR 240 Query: 237 SRRPLPTMDNMPIESRLYSDGLFSFSVNVNRA----TPSSTDQMLRTGRRTVSTSVRDNA 292 S + +N +S LYSDGLF FS+ VN++ D+ LR GR T+ T +D Sbjct: 241 SNHQIA--ENEFSQSILYSDGLFDFSIYVNKSGQQLNSPERDKALRYGRNTIYTYDKDGN 298 Query: 293 EITIVGELPPQTAKRIAENIKF 314 EIT +G+LP TA++I ++ F Sbjct: 299 EITFIGQLPFITAQKIVNSVVF 320 >UniRef50_C4K3Z0 Anti sigma E (Sigma 24) factor, negative regulator n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K3Z0_HAMD5 Length = 317 Score = 288 bits (738), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 136/304 (44%), Positives = 210/304 (69%), Gaps = 3/304 (0%) Query: 10 LVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRP 69 L+ +L ++ S P +G +LQ+M+ A +SLNYE ++I ++Q ++SLRYRH L+ + Sbjct: 10 LLIAALSPNSAGSEQPNAGMMLQEMSTAIRSLNYEFNYIQADEQDIDSLRYRHVILNGKT 69 Query: 70 LAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFI 129 AQLL+MD R EV Q ++ISYF+ L PFTL G +IVD+ PS++++DF LS YY +I Sbjct: 70 FAQLLRMDQLRVEVRQNNDQISYFQSDLTPFTLLGTHIVDAFPSVVFSDFSMLSQYYHYI 129 Query: 130 SVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFN 189 VG+ RIADR+C++IRV+ ++ RYSY +W+D +KLPM+++LL+ +G+TLEQF+VI+ N Sbjct: 130 FVGKMRIADRICQIIRVLPKENNRYSYFIWLDEVTKLPMQINLLNLNGQTLEQFKVISLN 189 Query: 190 VNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPI 249 ++ +++S +Q L KA +PPL+ +P E F W P WLP GF ++ + L + Sbjct: 190 MDDNLTSFVQNL-KAPVPPLMKLPEEETVNFDWFPKWLPAGFVDIPPNEHQLMHKKKF-L 247 Query: 250 ESRLYSDGLFSFSVNVNRAT-PSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRI 308 SR Y+DGLFSF + V+ ++T+ + RRT+ T VRD+ ++T+VGE+P TAKRI Sbjct: 248 ASRFYTDGLFSFLITVSPVNKKNNTESHFQQSRRTIQTQVRDHIQMTVVGEIPLSTAKRI 307 Query: 309 AENI 312 A+N+ Sbjct: 308 ADNL 311 >UniRef50_Q7MHN3 Negative regulator of sigma E activity n=68 Tax=Bacteria RepID=Q7MHN3_VIBVY Length = 325 Score = 286 bits (732), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 143/317 (45%), Positives = 208/317 (65%), Gaps = 3/317 (0%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 MK+ F++ + + A AS PA ALL QM+ ASQ+L+YEL++I I K +E L Y Sbjct: 1 MKKFLFSVCALFSVMTPQAFASDKPAE-ALLHQMSEASQNLSYELAYILIKKNSIEPLLY 59 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 RHA + + A L+ + GP REV++RG+E+SY EPG+EPFT+ +V + ++ +D Sbjct: 60 RHASKEAQQYAHLIYLSGPVREVIKRGHEVSYIEPGVEPFTIQAGEMVAPVMPMLGSDID 119 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 +L +YD++ VGR R A +VIR+V +DG RYSY+VW+D +SKLP+R DL+DRDGE + Sbjct: 120 QLHKFYDYVQVGRAREAGSPTQVIRIVPKDGLRYSYVVWIDEQSKLPLRADLVDRDGEVI 179 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRP 240 EQ+R I + VNQ I+ M L LP +L++P GE K +W +W P+GF SR Sbjct: 180 EQYRAITYTVNQKIADLMSGLEDVQLPAVLTLPKGEVEKSNWRVSWTPEGFVANDLSRYR 239 Query: 241 LPTMDNMPIESRLYSDGLFSFSVNV-NRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGE 299 L D M +ES+L++DGLFSFSV V + S Q++R GRRT+ + V EI++VG+ Sbjct: 240 LALTDQM-VESQLFTDGLFSFSVYVAEKDDHSLKGQLVRQGRRTLHSVVVGEHEISVVGD 298 Query: 300 LPPQTAKRIAENIKFGA 316 +PP TA+RIA+++ F A Sbjct: 299 IPPATAQRIAQSVTFTA 315 >UniRef50_Q65QC3 RseB protein n=2 Tax=Pasteurellaceae RepID=Q65QC3_MANSM Length = 326 Score = 234 bits (597), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 115/299 (38%), Positives = 183/299 (61%), Gaps = 5/299 (1%) Query: 17 FSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQM 76 FS + LL +M A LNYE+S++ I +++ RYRH + + AQL + Sbjct: 29 FSVFGQDNLSPKQLLTEMLAAQNKLNYEISYVQIAGAEIDTYRYRHVYNEGKSYAQLATL 88 Query: 77 DGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRI 136 +G ++E++QR N ISYF PF++ G I+D+LP+++ DF R+ +YDFI++GR RI Sbjct: 89 EGGKQEIIQRDNLISYFHSNYSPFSIRGSQIIDNLPNIVNADFSRIEKHYDFINMGRNRI 148 Query: 137 ADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISS 196 ADRL + +R++ +D RY Y+V+++ ++ L + D+LD+DG LE+FRV+ F ++ ++ Sbjct: 149 ADRLVQTVRILPKDNFRYQYVVFIEEKTHLLLGSDMLDQDGNLLERFRVVNFYIDDQMTQ 208 Query: 197 SM-QTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYS 255 + L+K PP+L K K SW WLPQGF+ +++ L D IESRLYS Sbjct: 209 PLTDALSKLPTPPVLDKATPPKNKLSWQAGWLPQGFAVLNNY---LTKTDEDTIESRLYS 265 Query: 256 DGLFSFSVNV-NRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIK 313 DGLFSF++ V N P + + + + G T+ + + E+TI+G++P TAKRI + IK Sbjct: 266 DGLFSFTIYVSNNILPENQENVWKQGSFTIYSESMKDKEVTIIGQIPLTTAKRIVQEIK 324 >UniRef50_P44792 Sigma-E factor regulatory protein rseB homolog n=23 Tax=Pasteurellaceae RepID=RSEB_HAEIN Length = 315 Score = 232 bits (591), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 113/286 (39%), Positives = 180/286 (62%), Gaps = 5/286 (1%) Query: 31 LQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEI 90 L +M A +LNYE++F+ ++S RYRH + DN+ AQL+ +DG ++E++QR N + Sbjct: 32 LDKMTQALDNLNYEIAFVQTTPANMDSFRYRHIKQDNKTYAQLVTLDGRQQEIIQRDNLV 91 Query: 91 SYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARD 150 SYF+P + FTLN IVD++P+++ +F +LS YDF+ +G+ R+A R + IR+V +D Sbjct: 92 SYFQPNAQAFTLNSGNIVDAMPAVVRANFDKLSSDYDFVKLGKDRVAGRFADTIRIVPKD 151 Query: 151 GTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLL 210 RY Y+V++D E+ L +R D+LDR+G+ L+QFRV+ ++ + + K +LPPLL Sbjct: 152 DFRYQYLVFIDEENGLLLRSDMLDREGKLLDQFRVVTLYIDDRLRGLTDYINKVSLPPLL 211 Query: 211 SVPVGEK-AKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNV-NRA 268 E+ + +W+ WLPQGFS + R ++N I+S LYSDGLF+F++ V N Sbjct: 212 KESKNEQSSDITWSAGWLPQGFSLI---RYTQEILENEIIDSALYSDGLFTFTLFVSNVG 268 Query: 269 TPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKF 314 + + + G T+ + V EIT +G+LP TAKRI + +KF Sbjct: 269 SNDLPENTWKQGAYTIYSEVIGGKEITFIGQLPISTAKRIVQEVKF 314 >UniRef50_A6VKY3 Sigma E regulatory protein, MucB/RseB n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VKY3_ACTSZ Length = 318 Score = 226 bits (577), Expect = 6e-58, Method: Compositional matrix adjust. Identities = 110/286 (38%), Positives = 176/286 (61%), Gaps = 3/286 (1%) Query: 30 LLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNE 89 LL M A Q LNY+ F+ + +L+YR++ +N+ AQ+ MDG +R+++QR + Sbjct: 35 LLNSMTQAEQQLNYQFIFVQNDNGNNHALQYRYSLKENKKYAQMTTMDGVKRDIIQRDDM 94 Query: 90 ISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVAR 149 +SYF P + PFTL YIVD+LP L+ +F +L+ YYDF ++GR RIADR+ +++R+ + Sbjct: 95 VSYFRPQMAPFTLKSKYIVDNLPPLMQANFNKLAKYYDFTALGRNRIADRMVQMVRITPK 154 Query: 150 DGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPL 209 D RY Y+ ++D E+ L +R DLLD+DG L+QFR+I V++ ++++ + PPL Sbjct: 155 DNFRYRYVAFIDEETHLLLRSDLLDQDGVLLDQFRIIQLAVSETPLPFVESVEQLPFPPL 214 Query: 210 LSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRAT 269 +S +W WLPQGF ++ + +N ESR YSDGLF+F + V+ Sbjct: 215 ISAQSRPGKSSNWKLNWLPQGFRQIRKTETTDDEGNN--TESRFYSDGLFTFEIFVSDGQ 272 Query: 270 P-SSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKF 314 + + LR G T+ + ++ EIT++G+LP TAKRI +++KF Sbjct: 273 KDEAQNSSLRHGAVTIYSETVNDKEITLIGQLPIGTAKRIVQDLKF 318 >UniRef50_B8F3K5 Periplasmic negative regulator of sigmaE n=2 Tax=Haemophilus parasuis RepID=B8F3K5_HAEPS Length = 321 Score = 212 bits (540), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 120/309 (38%), Positives = 178/309 (57%), Gaps = 8/309 (2%) Query: 14 SLLFSANASATPASG--ALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLA 71 SL S A P S A L MN A Q+LNYE +I V SLRYRHA + + A Sbjct: 10 SLFLSITGFAQPLSTPLAYLTAMNKAHQTLNYEQLYIFQKGDDVTSLRYRHAYDNGQEYA 69 Query: 72 QLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISV 131 QLL +D R E++ R + + YF +PF+L +I+D P+++Y++F +L Y F+ Sbjct: 70 QLLHLDATREEMILREDVVGYF-GDYQPFSLKTPHILDDFPTVVYSNFSQLEGY-AFLDN 127 Query: 132 GRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVN 191 G++R+ADR+ VIR+V RD RY Y++W+D E+ L ++ LLDRD LEQFR I V+ Sbjct: 128 GKSRVADRIARVIRIVPRDDFRYQYMLWIDEENHLLLQSHLLDRDNNVLEQFRTIQSVVD 187 Query: 192 QDISSSMQTLAKANLPPLLSVPVGEKAK-FSWTPTWLPQGFSEVSSSRRPLPTM--DNMP 248 + + ++ + LP LL V + K W W+P GF +V+S ++ L + + Sbjct: 188 EQLLYIVEPIRTLILPTLLQTKVHSELKPLEWQLKWVPNGFKQVASGQQNLSEVLAQDEQ 247 Query: 249 IESRLYSDGLFSFSVN-VNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKR 307 IESRLYSDGLFSF+V V S DQ R G+ +V + + ++ IVGE+P +A+ Sbjct: 248 IESRLYSDGLFSFTVYLVQNKGISFQDQFWREGKTSVYSQTIGDKDVIIVGEIPLASARH 307 Query: 308 IAENIKFGA 316 I + I+F + Sbjct: 308 IVQEIEFSS 316 >UniRef50_C5S2D4 Periplasmic negative regulator of sigmaE n=2 Tax=Actinobacillus minor RepID=C5S2D4_9PAST Length = 318 Score = 203 bits (517), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 107/305 (35%), Positives = 173/305 (56%), Gaps = 8/305 (2%) Query: 17 FSANASATPASG-ALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQ 75 FS+ + AT S LLQ M A ++ NYEL +I +ES +YRH + AQLL+ Sbjct: 15 FSSISWATSTSPIQLLQNMVSAHKNTNYELRYILQQNNDIESFQYRHTTQSYKEFAQLLR 74 Query: 76 MDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTR 135 +D R E++ R N +SY +PF+L +I+D+LP+++YTDF +L Y F +G++R Sbjct: 75 LDNSREEIILRDNTVSYLGLTFKPFSLKSSHILDNLPAILYTDFSKLKD-YQFTLLGKSR 133 Query: 136 IADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDIS 195 +ADR+ ++++ D +RY Y +W+D E+ L ++ L D +G+ LEQF+VI+ V ++ Sbjct: 134 VADRIANIVKIAPSDNSRYQYTLWIDDENSLLLKSHLQDHEGQILEQFKVISQYVGNELL 193 Query: 196 SSMQTLAKANLPPLLSVPVGE---KAKFSWTPTWLPQGFSEVSSSRRPL--PTMDNMPIE 250 L LPP++ + E K +W WLP GF V ++ T +E Sbjct: 194 YVTPYLESLKLPPVIDTSLSEQNIKQDINWKLNWLPSGFYLVKGLKQGFITDTEKITKLE 253 Query: 251 SRLYSDGLFSFSVNVNRATP-SSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIA 309 S+LYSDG+FSF+V V S +Q + G T+ + ++ I ++G++P ++AK+I Sbjct: 254 SQLYSDGIFSFTVYVFPTEELSFNEQFFKQGNLTIFSHTVEDKNIVLIGDIPTESAKKIV 313 Query: 310 ENIKF 314 NI F Sbjct: 314 FNITF 318 >UniRef50_A0KGE8 Sigma-E factor regulatory protein RseB n=2 Tax=Aeromonas RepID=A0KGE8_AERHH Length = 354 Score = 177 bits (448), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 105/301 (34%), Positives = 167/301 (55%), Gaps = 8/301 (2%) Query: 20 NASATPASG-ALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDG 78 ASA S ALLQQM A N+ELS + + +E +R+ H +D + +A L +DG Sbjct: 46 KASADDKSAEALLQQMQSAVSQQNFELSMVKARQGRLEPIRFSHGVIDGKEVAHLSYLDG 105 Query: 79 PRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIAD 138 E +QR +E ++FE EP+TL G SL+ R+ YD + GR+R A Sbjct: 106 KTIEYLQRQDEYTFFENTHEPYTLKGARFPGVWASLVRMPLPRVLESYDPVLAGRSRAAG 165 Query: 139 RLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSM 198 + +V+R+V ++ +Y +++W+D +S L +RVD++DR+G +EQ + + + + Sbjct: 166 LVAQVVRLVPKEADKYGFVLWIDEQSHLLVRVDMVDREGNLVEQVLGVDLDRLPAPAPWL 225 Query: 199 QTLAKANLPPLLSVPVGEKA---KFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYS 255 LA + LP L++ A + +W TWLP+GF +S R L T ++P++ + S Sbjct: 226 VKLAGSKLPQALALEDAYPAPQQQLNWHLTWLPEGFKVLSRDRHQLVTT-SLPVDYMMLS 284 Query: 256 DGLFSFSVNVNRATPSST--DQMLRTGRRTVSTSVRD-NAEITIVGELPPQTAKRIAENI 312 DGL SV V R P Q++R G ++ + V D EIT+VGE+P TAKRIAE++ Sbjct: 285 DGLVDLSVYVARVDPKQAVRQQLIRQGATSLVSYVNDVGVEITVVGEVPADTAKRIAESV 344 Query: 313 K 313 + Sbjct: 345 Q 345 >UniRef50_A7JWL1 Sigma E regulator RseB n=3 Tax=Pasteurellaceae RepID=A7JWL1_PASHA Length = 327 Score = 174 bits (442), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 100/318 (31%), Positives = 169/318 (53%), Gaps = 5/318 (1%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 +K+ +++ F+ S A L M+ A + YEL +I ES R Sbjct: 5 IKKYLLLFWVISACYTFAWAESTIKTPLAYLTAMSEAHKKSTYELVYILQQGSDTESFRL 64 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 RHA N+ AQLL +D R E++ + N++SY PF+LN I+D+LP+++YTD+ Sbjct: 65 RHAFTHNKEYAQLLNLDHSREEIILKNNKVSYLGYNFRPFSLNSSQILDNLPNVLYTDYA 124 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 L Y F+ G+ RI+DR+ +VIR+ D RY+YI+W+D E+ L ++ +L+ D L Sbjct: 125 NLKG-YAFLDAGKDRISDRITKVIRMKPNDTLRYAYILWIDEETHLLLKSQVLNMDNLVL 183 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKF-SWTPTWLPQGFSEVSSSRR 239 E+FRV+ + ++ + LP L +V E K W WLP GF + Sbjct: 184 EEFRVLQLYQSPELDRIANVIESLMLPTLTTVKKEEFPKSDGWQVKWLPTGFRLIQQQTV 243 Query: 240 PLPT--MDNMPIESRLYSDGLFSFSVNVNRATPSSTDQM-LRTGRRTVSTSVRDNAEITI 296 T +++ ++SR+YSDGL + ++ + + S ++ + G+ T+ ++ +I I Sbjct: 244 TGATYQVESEYVDSRVYSDGLSTLTIYIMPSQGVSFNEYAWQQGKLTILNQTINDRDIVI 303 Query: 297 VGELPPQTAKRIAENIKF 314 +G++P Q+AK+I NI F Sbjct: 304 IGDVPLQSAKQIMNNIGF 321 >UniRef50_Q3IDL6 Putative anti sigma E (Sigma 24) factor, negative regulator n=3 Tax=Alteromonadales RepID=Q3IDL6_PSEHT Length = 317 Score = 172 bits (437), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 101/318 (31%), Positives = 175/318 (55%), Gaps = 11/318 (3%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 MK + F +SL ++ F+ AS T + LL +M A + N++ SF+ + + +E R+ Sbjct: 1 MKVITFILSL---AISFNTFASDTNPAKDLLLKMANAVHTRNFDASFVVVKGKTMEPYRW 57 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 HA+ D+ + L ++G E+V+ N+++YFEP EP++L D I +P +++ + + Sbjct: 58 LHAKQDDIEIEHLSLLNGAGLEMVRVDNQVTYFEPQSEPYSLTTDSIAGPIPEVLFKNVE 117 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 RLS +YDF+ G+ RI+ R +++R+ ++D +Y+Y +W+D ES L ++ ++ GE L Sbjct: 118 RLSGHYDFVLGGKGRISGRAAQLVRIESKDEDKYNYWIWLDMESSLLLKAAYVNHQGEAL 177 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLP-PL----LSVPVGEKAKFSWTPTWLPQGFSEVS 235 EQ ++ +V + +S + + N P PL L AK +W WLP GF + Sbjct: 178 EQLQLTHISVTEQPASMLLEILNRNFPTPLPNNSLETLDSNTAK-TWKIDWLPAGFELLK 236 Query: 236 SSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSS-TDQMLRTGRRTVSTSVRDNAEI 294 S R L ++N + L+SDG SV + R P L +G TV N ++ Sbjct: 237 SDRHKL-DLNNELTDYYLFSDGFVEVSVFIQRPLPGKRLSGSLTSGATTVYVHNGGNFDV 295 Query: 295 TIVGELPPQTAKRIAENI 312 ++VG +P TAK+IAE++ Sbjct: 296 SVVGNIPSLTAKKIAESV 313 >UniRef50_A6FDN5 Sigma-E factor regulatory protein RseB n=1 Tax=Moritella sp. PE36 RepID=A6FDN5_9GAMM Length = 347 Score = 169 bits (429), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 99/306 (32%), Positives = 173/306 (56%), Gaps = 16/306 (5%) Query: 20 NASATP---ASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQM 76 N +A P ++ ALL M A + LNY+LS++ I + + +RY H +D+ + LL + Sbjct: 39 NVAAAPPQLSADALLDNMKTAFKQLNYDLSYVEIERGRITPMRYSHGVIDDVSVGHLLSL 98 Query: 77 DGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVG-RTR 135 +G RE ++RG+ S+FE ++L+ I L +L+ T+ Y I VG ++R Sbjct: 99 NGNPREYLRRGDITSFFEAEQPGYSLSSTAIPGLLFNLMATELTLDDSLYQAIYVGGKSR 158 Query: 136 IADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQ--D 193 + RL +V+RVV D R+ Y++W+D + LP+R+D++ GE + F+V+A ++ Q D Sbjct: 159 VTGRLSQVVRVVPNDKYRFGYLIWIDVTTNLPLRIDMIKDSGEVV--FQVMAISLYQFPD 216 Query: 194 ISSSMQTLAKANLPPLLSVP-----VGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMP 248 ++ ++ L LPP+LS + E K W W+P GF ++ S++ + + + Sbjct: 217 VTPWLEQLNSVKLPPVLSAVQTQALLPEPTKSEWKAAWMPDGFKQIVSNKHQIVGIGQI- 275 Query: 249 IESRLYSDGLFSFSVNVN-RATPSSTDQMLR-TGRRTVSTSVRDNAEITIVGELPPQTAK 306 I+ +SDGL S+ VN A S Q L +G+ ++ + + D+ EI +VGE+P TAK Sbjct: 276 IDYMQFSDGLVDISIYVNTNAKAGSLSQGLGVSGQISLQSKITDDIEIVVVGEVPSMTAK 335 Query: 307 RIAENI 312 +IA+++ Sbjct: 336 KIADSV 341 >UniRef50_Q47WP0 Sigma-E factor regulatory protein RseB n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47WP0_COLP3 Length = 337 Score = 169 bits (428), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 96/305 (31%), Positives = 167/305 (54%), Gaps = 15/305 (4%) Query: 18 SANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDN-RPLAQLLQM 76 SA + T ++ L++++ + + LN+ SF+ + E + H DN + L ++ Sbjct: 16 SAITADTESAKFSLERLSNSLRQLNFSTSFVVVKNNQAEPYHWLHGIGDNEQELEIFTRL 75 Query: 77 DGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRI 136 +GPRR+V+++G +SY EP EP+++ + +PS+ + L Y FISVGR+RI Sbjct: 76 NGPRRDVLRQGKIVSYIEPEQEPYSIISSDVRSPIPSIFRGNISELEESYRFISVGRSRI 135 Query: 137 ADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISS 196 R+ +++R+V++D R+SY +W+D ++ L +++ +L R G+ LEQ + VN+ ++ Sbjct: 136 LGRVAQLVRIVSKDKYRFSYWLWLDQKTGLLLKMAVLTRQGQLLEQIQFTHIEVNEQLTD 195 Query: 197 SMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDN---MPIESRL 253 +++ LP ++ + + SW WLPQGFS V S++ L + + +E L Sbjct: 196 NLEQFQLTELPKVVELTQQQNKALSWQVDWLPQGFSVVKSNQHRLNSHNQGNEKAVEFML 255 Query: 254 YSDGLFSFSVNVN------RATPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKR 307 +SDGL SV VN RA ++D G V + E+ IVG +P TAK+ Sbjct: 256 FSDGLVEVSVYVNPSQEKFRAPEYASD-----GATIVFNHILQGIEVGIVGNIPLATAKK 310 Query: 308 IAENI 312 IAE+I Sbjct: 311 IAESI 315 >UniRef50_A1SR26 Sigma E regulatory protein, MucB/RseB n=2 Tax=Psychromonas RepID=A1SR26_PSYIN Length = 335 Score = 167 bits (422), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 96/331 (29%), Positives = 174/331 (52%), Gaps = 19/331 (5%) Query: 1 MKQLWFAMSLVTGSLLFSANAS----ATPASG------------ALLQQMNLASQSLNYE 44 MK L+++ +L+T + A A+ AT S LQ M A ++LNYE Sbjct: 1 MKLLFYSKTLITAVFILIAGAAFSVQATEMSNDQTVKKDNITAIEYLQLMQTAYKNLNYE 60 Query: 45 LSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNG 104 + +++ K VE + H ++ +A ++G RE +Q +ISYFE G +P+TL Sbjct: 61 ILYLNNLKNTVEPKQLLHGVINQEEIAYFRYLNGAMRESLQYLQKISYFEQGSQPYTLQS 120 Query: 105 DYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTES 164 ++ ++ + Y++I +G+ RIA + IR++++D RYSYIVW+D ++ Sbjct: 121 TRNQSVFANIANFNYDKGLDSYEYIILGKGRIAGKTAMAIRMISKDQYRYSYIVWIDLDT 180 Query: 165 KLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFS-WT 223 LP+R+D ++ L+Q V++ V++ ++ +++L+ LP L + + S W Sbjct: 181 HLPLRLDTINSSNIILDQIMVVSLKVSEQVNPWLESLSNQKLPELFHLSQTSNLQASLWK 240 Query: 224 PTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVN--RATPSSTDQMLRTGR 281 WLP GF+ V + L +N P+ + +DG+ S SV ++ + T + ++ G Sbjct: 241 VDWLPAGFNIVKDDQHKLVMYENEPVSYIMLNDGIVSVSVYISAKKTTSEQQQKTIQRGA 300 Query: 282 RTVSTSVRDNAEITIVGELPPQTAKRIAENI 312 + T ++N EI ++GE+P TAKR+ E+I Sbjct: 301 TVLYTDQKNNFEINVIGEIPVATAKRLIESI 331 >UniRef50_A3WPR5 Negative regulator of sigma E activity n=1 Tax=Idiomarina baltica OS145 RepID=A3WPR5_9GAMM Length = 321 Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 83/282 (29%), Positives = 155/282 (54%), Gaps = 3/282 (1%) Query: 34 MNLASQSLNYELSFISINKQGVESLRYRHARLDN-RPLAQLLQMDGPRREVVQRGNEISY 92 M+ A N+E S + + + +E + HA N L ++QM+GP ++ G+++S+ Sbjct: 41 MSTALNEQNFEASLVYVLGERIEPYHWLHAVEPNGEQLELIVQMNGPGFRALRIGDKVSH 100 Query: 93 FEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGT 152 F P ++L + I +P F+++ YY ++VG R+ DR + IR++++ Sbjct: 101 FHPAARDYSLRANSINHLIPPAFSEKFEKIQSYYRVVAVGGARVLDRKAQHIRLISKHDN 160 Query: 153 RYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSV 212 R+ + VW+D +S +P++V +++ DG +EQ ++ + + QD S ++ L + ++PPL+ V Sbjct: 161 RFGFSVWVDRDSGMPLKVMMINEDGIPVEQVQMTSLALRQDPSPLLEELKRLSMPPLIQV 220 Query: 213 PVG-EKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPS 271 ++ + S P W P+GF V L +DN P++ L++DGL +SV + Sbjct: 221 TTNSQQMQRSLRPLWHPEGFKLVEQKHHQL-AVDNTPVDHYLFTDGLTEYSVYIAPRDAE 279 Query: 272 STDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIK 313 T M G + + T R++ IT+VG++P QTAKRI ++ Sbjct: 280 QTGAMSVVGSQNLYTEPRNDVIITVVGQIPIQTAKRIVAEVQ 321 >UniRef50_Q15R29 Sigma E regulatory protein, MucB/RseB n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15R29_PSEA6 Length = 333 Score = 158 bits (399), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 96/302 (31%), Positives = 162/302 (53%), Gaps = 7/302 (2%) Query: 19 ANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY--RHA-RLDNRPLAQLLQ 75 A A + ++ L++M+ A +LNY +SF+ + K GV+S Y RH + QL Sbjct: 32 AKAFPSDSAHGWLEKMSHAHSNLNYSISFVLL-KPGVDSQPYLWRHGVSASGVKMEQLNL 90 Query: 76 MDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTR 135 ++GP REVV+ +++SYFEP + P++L I PS + + YDF+ VGR+R Sbjct: 91 LNGPGREVVRIDDKVSYFEPNVPPYSLQSRVINGPFPSEFFQQPDEIKDSYDFVMVGRSR 150 Query: 136 IADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDIS 195 ++ R + IR+V++D +R+ VW+D E+ L ++++L+D +G+ LEQ +V A +V + Sbjct: 151 VSGRAAQQIRIVSKDKSRFGMNVWLDQETGLMLKMNLVDLNGQLLEQIQVTACHVTEQPD 210 Query: 196 SSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYS 255 + + A LP +L + K W ++P G EV LP + +E + S Sbjct: 211 DFFEKIEPAMLPEVLKLRPQTHTKAIWDIAYVPVGMVEVKRDIHRLP-ITGQSVEYVMLS 269 Query: 256 DGLFSFSVNVNRATPSSTDQ--MLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIK 313 DGL S+ + + +Q +LR T+ T + +T+VG+LPP+TA IA +I Sbjct: 270 DGLVDVSIYMRESQNDGINQDILLRHESDTLLTLNQGRLNVTVVGKLPPETANHIASSIH 329 Query: 314 FG 315 Sbjct: 330 LA 331 >UniRef50_B4RVL6 Putative anti sigma E (Sigma 24) factor, negative regulator n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RVL6_ALTMD Length = 328 Score = 157 bits (396), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 96/302 (31%), Positives = 167/302 (55%), Gaps = 9/302 (2%) Query: 18 SANASATPASGA--LLQQMNLASQSLNYELSFISINKQGVESLRY--RHARL-DNRPLAQ 72 +A+A P S + L + N+ + + N+++SF+ G E++ Y RH + D L Q Sbjct: 26 TASAETQPQSASQWLAELQNIITNA-NFQVSFVQ-TIAGKETVPYLWRHGVMEDGSELEQ 83 Query: 73 LLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVG 132 L +GP RE+++ + +S FEP ++P++L +I +PS + ++L+ Y+F++VG Sbjct: 84 LNLQNGPGRELIRINDVVSVFEPDVQPYSLRSKHINGPIPSALLYHPEQLAEAYEFVAVG 143 Query: 133 RTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQ 192 R R+A R + IR+V+RD TR+ Y +W+D S + +++++LD G LEQ +V AF ++ Sbjct: 144 RARVAGRSAQQIRIVSRDNTRFGYQLWLDESSGMLLKLNMLDLQGALLEQIQVTAFAISP 203 Query: 193 DISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESR 252 + + A+LP +++ W T+LP G E+ R L + +E + Sbjct: 204 TPAEYFSRINAASLPAPMALSTAPARAHKWDVTYLPAGMREIKQDTRRL-ALTGQVVEYK 262 Query: 253 LYSDGLFSFSVNVNRATPSSTDQM-LRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAEN 311 L+SDGL SV V A + + + LR T T A++T+VGE+P QTA IA + Sbjct: 263 LFSDGLVDVSVYVQPADDALGETLALRNEVSTFLTLTDGKAQVTVVGEIPLQTANAIATS 322 Query: 312 IK 313 ++ Sbjct: 323 LR 324 >UniRef50_UPI0001AEB8D1 putative anti sigma E (sigma 24) factor, negative regulator n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEB8D1 Length = 394 Score = 155 bits (393), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 90/276 (32%), Positives = 156/276 (56%), Gaps = 6/276 (2%) Query: 42 NYELSFISINKQGVESLRY--RHARL-DNRPLAQLLQMDGPRREVVQRGNEISYFEPGLE 98 N+++SF+ G E++ Y RH + D L QL +GP RE+++ + +S FEP ++ Sbjct: 114 NFQVSFVQ-TIAGKETVPYLWRHGIMEDGSELEQLNLQNGPGRELIRVNDVVSVFEPDVQ 172 Query: 99 PFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIV 158 P++L +I +PS++ ++L+ Y+F++VGR R+A R + IR+V+RD TR+ Y + Sbjct: 173 PYSLRSKHINGPIPSVLLYHPEQLAEAYEFVAVGRARVAGRSAQQIRIVSRDNTRFGYQL 232 Query: 159 WMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKA 218 W+D S + +++++LD G LEQ +V AF ++ + + + A+LP +++ Sbjct: 233 WLDESSGMLLKLNMLDLQGALLEQIQVTAFAISPEPADYFSRINSASLPAPMALSNTPNR 292 Query: 219 KFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQM-L 277 W T+LP G E+ R L + +E +L+SDGL SV V A + + + L Sbjct: 293 AHKWDVTYLPAGMREIKQDTRRL-ALTGQIVEYKLFSDGLVDVSVYVQPAEDALGETLAL 351 Query: 278 RTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIK 313 R T T A++T+VGE+P QTA IA +++ Sbjct: 352 RNEVSTFLTLTDGKAQVTVVGEIPLQTANAIATSLR 387 >UniRef50_C4LBZ4 Sigma E regulatory protein, MucB/RseB n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBZ4_TOLAT Length = 320 Score = 150 bits (379), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 89/305 (29%), Positives = 166/305 (54%), Gaps = 9/305 (2%) Query: 17 FSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQM 76 F ASA P++ ALL QM N+EL I + +E LR H + + LL + Sbjct: 14 FITKASAEPSAEALLFQMQRGYHHNNFELVMAHILQNNIEPLRLTHGWNNRTEITHLLTL 73 Query: 77 DGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRI 136 G E + + ++++ E +TL + S++ + + L YY+ +S G++RI Sbjct: 74 SGRPIEYLGKNKQVTFAESAQISYTLQESQLPGLWFSMLNSSPETLLKYYEVVSTGKSRI 133 Query: 137 ADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISS 196 A ++ +++R+ A++ ++YS+I+W++ ++ + +R+D+ D G +EQ+ I F + + S+ Sbjct: 134 AGQVAQLVRLTAKEDSKYSFIIWLEQKTGILLRLDVNDAQGNLVEQYLGIDFRLLSENST 193 Query: 197 SMQTLAKANLPPLLS---VPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRL 253 +++TLA +PP + + E A WT WLP GF +SS + L D + ++ + Sbjct: 194 NIKTLASMKVPPAATSHDIYRAEPASHQWTLGWLPSGFVPLSSDQHKLIGSDEL-VDYFM 252 Query: 254 YSDGLFSFSVNVNRATPSS----TDQMLRTGRRTVSTSVRDNA-EITIVGELPPQTAKRI 308 SDGL SV ++R++ + +Q+ G ++ + RD+ +T+VGELP + +RI Sbjct: 253 LSDGLVDVSVYISRSSAETKGREKEQIAMHGATSIFSINRDDGVTLTVVGELPLLSLRRI 312 Query: 309 AENIK 313 AE I+ Sbjct: 313 AETIR 317 >UniRef50_UPI0000E11523 putative anti sigma E (sigma 24) factor, negative regulator n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E11523 Length = 347 Score = 144 bits (362), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 81/286 (28%), Positives = 158/286 (55%), Gaps = 5/286 (1%) Query: 30 LLQQMNLASQSLNYELSFISINKQGVESLRY--RHARLDNRPLAQLLQMDGPRREVVQRG 87 LL +M A+ +LNY + I + + G E + Y +H D+ P+ L +++GP + ++ G Sbjct: 52 LLAKMAEATNTLNYASTLI-VYRPGAEPVPYLWKHGIKDDVPVEMLSELNGPNAKTLRYG 110 Query: 88 NEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVV 147 N++SYF P + +L +I + + ++ Y+ I VG++R+A +RV+ Sbjct: 111 NQVSYFNPDMSAHSLLQSHIHGPFAHNLIRYPEAIATAYEVIVVGKSRVAGNEAWQVRVL 170 Query: 148 ARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLP 207 +RD +RY+YI+W+D S LP+++++++ G+ +EQ + + + ++ +A +LP Sbjct: 171 SRDNSRYNYILWVDAASFLPLKLNMVNAKGDLIEQVQATNLTITDTLDNAFVDMALKDLP 230 Query: 208 PLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNR 267 ++ + + + +W T LP G +V L +++ +E L SDG+ SV + + Sbjct: 231 AVMHINPPKSFRLNWGVTHLPLGMKQVKRDIHRLSITEDV-VEYILLSDGMVDVSVYLQK 289 Query: 268 ATPSSTDQMLRTGRR-TVSTSVRDNAEITIVGELPPQTAKRIAENI 312 AT + +L T T + V DN ++++VG++PP TA+RI + I Sbjct: 290 ATYQQAEDVLFTKDAVTFLSRVTDNIQVSVVGKIPPATAQRIMQMI 335 >UniRef50_Q5R102 Negative regulator of sigma E activity n=1 Tax=Idiomarina loihiensis RepID=Q5R102_IDILO Length = 321 Score = 140 bits (353), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 85/315 (26%), Positives = 158/315 (50%), Gaps = 11/315 (3%) Query: 9 SLVTGSLLFSANASATP-------ASGA-LLQQMNLASQSLNYELSFISINKQGVESLRY 60 S++ G++LF+ S + SGA +M A LN+E S + ++ +E ++ Sbjct: 8 SILCGAVLFAGTFSVSAQQTNEQAESGADWFNRMAEALTELNFEASLVHVHGDQIEPYQW 67 Query: 61 RHARLDNRPLAQLL-QMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDF 119 +LL QM+GP +++ N++++F + L D I P+ F Sbjct: 68 LQGNDPETGSTELLIQMNGPDFRILRVNNKVAHFNTSSSNYALESDTITAIFPAAFSQPF 127 Query: 120 KRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGET 179 +RLS Y + G R+ R + IR+++RD RYSY +W+D + +P+++ ++++ G+ Sbjct: 128 ERLSHSYQVMVGGGARVLGRNAQHIRILSRDNQRYSYALWIDRKHGMPLKMIMMNQSGDV 187 Query: 180 LEQFRVIAFNVNQDISSSMQTLAKANLPPLLS-VPVGEKAKFSWTPTWLPQGFSEVSSSR 238 +EQ ++ + +V + ++ +PPLL + V +S P W P+GF +S Sbjct: 188 VEQMQLTSLSVRDTAPEITKEISNIEMPPLLKDLRVQSATNYSVGPRWAPRGFKLLSQQS 247 Query: 239 RPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVG 298 L +D P++ L+SDGL +SV V T + + T+ + +N +T+VG Sbjct: 248 HTL-VVDATPVDHYLFSDGLAEYSVYVAELTEGMETDLALSSSHTLFSKRYNNFLVTVVG 306 Query: 299 ELPPQTAKRIAENIK 313 ++P A+RIA +K Sbjct: 307 QVPLTMAQRIAAEVK 321 >UniRef50_Q07YZ2 Sigma E regulatory protein, MucB/RseB n=22 Tax=Shewanella RepID=Q07YZ2_SHEFN Length = 315 Score = 135 bits (339), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 88/300 (29%), Positives = 149/300 (49%), Gaps = 5/300 (1%) Query: 15 LLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLL 74 L F +A ++ A L+ M+ A Y+ S I + + L Y H +DN+ +A L Sbjct: 16 LTFPTHAEDDLSAKAWLKNMSQAMHDKQYKTSIIQLQADHIRPLVYIHGIVDNKEVALLE 75 Query: 75 QMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRT 134 ++GP + V+ GN +++ E +++ I P+ + D +L Y F+ GR Sbjct: 76 YLNGPPKNAVRVGNTVTFIEHDQPAYSVVAPRIQGIWPAALAGDLSQLEKGYQFVIGGRG 135 Query: 135 RIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDI 194 RIA R ++IR++A D RY VW+D ++ LP+R D L+++ + LEQ VI + Sbjct: 136 RIAGRPGQMIRLLANDDNRYDAQVWIDMDTYLPLRFDSLNKEKQLLEQTMVIELIELTEP 195 Query: 195 SSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLY 254 ++ + AK P +++ K +W TWLP+GF V L + P+E Sbjct: 196 ANILIEAAKQEWPAVMNQAERTDGK-NWQFTWLPEGFDVVVRDHHRLIGIHE-PVEYVAL 253 Query: 255 SDGLFSFSVNVNRA--TPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENI 312 +DGL + SV V RA P + ++R G V V E+ +G++P +T +IA ++ Sbjct: 254 TDGLANISVYVARAGENPMPNELLIRNGLSMVVVKV-GTLEVVAIGKVPSETLDKIANSL 312 >UniRef50_Q2SL38 Sigma factor algU negative regulatory protein MucB n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SL38_HAHCH Length = 342 Score = 118 bits (295), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 93/322 (28%), Positives = 149/322 (46%), Gaps = 19/322 (5%) Query: 5 WFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHAR 64 W +SL+ L SA A A+ LQ+M A Q L+Y +FI + S++ H Sbjct: 18 WSLVSLLALISLVSAPAQAS-GPQEWLQRMLEARQELSYRGAFIYSRGDEMSSMKVFHRT 76 Query: 65 LDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSP 124 D +L+ MDG RE+++ G+ + PG + L P + + Sbjct: 77 QDGVEKERLVAMDGEMREIIRDGDMLICVFPGGKQVRLEQAAYTGPFPGAVLNGGSDVHS 136 Query: 125 YYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFR 184 Y+ G R+A + V+A+D RYSY +W++ S + ++ L +R GE LE F+ Sbjct: 137 VYELRMAGEERVAGHDVLKMAVMAKDQYRYSYYLWLEKNSGMLLKSLLTNRKGEVLEHFQ 196 Query: 185 VIAFNV-----NQDISSSM-QTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSR 238 + +Q+++ SM + K+ P P + WTP WLP+GF S S Sbjct: 197 YTVLELGAQVTDQELAPSMPKADVKSVKPEQEEAP--DALPEQWTPAWLPKGF---SMSP 251 Query: 239 RPLPTMDNMP--IESRLYSDGLFSFSVNVNRATPSST-DQMLRTGRRTVSTSVRDNAE-- 293 D MP + +++Y DGL FS+ V P + + R G T + + Sbjct: 252 NVTKRNDVMPGDMRTQVYGDGLTMFSIFVEENNPQAMPEGASRMGATTAYSKHIKQGDMT 311 Query: 294 --ITIVGELPPQTAKRIAENIK 313 IT+VGE+P +T KR+A+N+K Sbjct: 312 YVITVVGEVPIETVKRVADNMK 333 >UniRef50_Q0VP13 Negative regulator for alginate biosynthesis n=2 Tax=Alcanivorax RepID=Q0VP13_ALCBS Length = 326 Score = 115 bits (287), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 97/340 (28%), Positives = 162/340 (47%), Gaps = 39/340 (11%) Query: 1 MKQLWFAMSLVTGSLLFS--ANASATPASGALLQQMNLASQSLNYELSFISINKQGVESL 58 ++ L F+++L + + S A A+ +PA L Q M A++SLNY F+ V ++ Sbjct: 3 LRVLAFSLTLCSPVMALSEVALANTSPAQDQL-QSMAQANRSLNYTGRFLYQFGAEVSTM 61 Query: 59 RYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLN---------GDYIVD 109 HA + R +L +DG EV++RG+E+ P +N GD I Sbjct: 62 EVSHAVIGGREFQRLTHLDGRLVEVLRRGDEVVCLHPNGTLTRINRKHSGPLALGDRIAR 121 Query: 110 SLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMR 169 +P+ Y+ + G R+A R +RV D RY Y +W+D +S L ++ Sbjct: 122 DVPA-----------QYNILVDGDGRVAGRATTRMRVAPLDTYRYGYRLWLDNDSSLLLK 170 Query: 170 VDLLDRDGETLEQFRVIAFNV-----NQDISSSMQTLAKANLPPLL-SVPVGEKAKFSWT 223 +++D G LE+ ++ + QD S +T+ +++L PL S P + S Sbjct: 171 SEIVDGSGVALERVEFVSLTLAAPLTEQDFSIP-ETVKESDLKPLEDSHP---SHRLSVE 226 Query: 224 PTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRT 283 W+P GF+ V R + D P+ ++ YSDGL +F+V V S ++ + T Sbjct: 227 AQWMPPGFTSVDQDWRQSGS-DREPVAAQGYSDGLAAFTVFVEAVDGGSVEEGVSRVGPT 285 Query: 284 VSTSVRDNAE-----ITIVGELPPQTAKRIAENIKFGAAQ 318 V+ S R A +T+VGE+P TA+R+ E I+ +Q Sbjct: 286 VAVSRRLTAPSGAYLVTLVGEVPQSTAERVIEGIRVRDSQ 325 >UniRef50_B5JX06 MucB/RseB n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JX06_9GAMM Length = 330 Score = 112 bits (281), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 88/327 (26%), Positives = 153/327 (46%), Gaps = 32/327 (9%) Query: 6 FAMSLVTGSLLF---SANAS-ATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYR 61 FA L +LLF S NA A+P L+ M A Q+ +Y +F+ ++ +ES+R Sbjct: 13 FAAGL---ALLFAPLSLNADDASPVE--WLKGMCDAMQNQSYTGTFVYLHGNSMESMRVV 67 Query: 62 HARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKR 121 D +L+ ++G RE+++R N ++ P L T+N + LP + + Sbjct: 68 RRHTDAGSDEKLVSLNGEPREILRRNNVVTQILPKLGVVTVNKARVRSQLPLSVPMEIDG 127 Query: 122 LSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLE 181 + YY G R+A R C+V+ + RD RY + +W+D S+L ++ DLLD G+ LE Sbjct: 128 IERYYQLSLEGVERVAGRRCQVLSLKPRDSYRYGHRLWIDESSRLLIKSDLLDTQGDVLE 187 Query: 182 QFRVIAFNVNQDISSSM------------QTLAKANLPPLLSVPVGEKAKFSWTPTWLPQ 229 Q V+ ++ +M + L A+ LL + W + PQ Sbjct: 188 QIMYTELEVSPQLTDAMFEPEFDTAGLKRRELGHADQQQLL------MSDHQWRVSRAPQ 241 Query: 230 GFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVN---RATPSSTDQMLRTGRRTVST 286 GF + RR ++ +E +YSDG+ + SV V + + R G Sbjct: 242 GFMLTTHERR--GASESAAVEHMVYSDGMATVSVFVEPLAKGENMPVEGHSRMGALNAYG 299 Query: 287 SVRDNAEITIVGELPPQTAKRIAENIK 313 V+ + ++ +VGE+P T K+++E+++ Sbjct: 300 RVQGSHKVVVVGEVPAATVKQLSESVE 326 >UniRef50_Q1N1C1 Sigma factor algU negative regulatory protein MucB n=1 Tax=Bermanella marisrubri RepID=Q1N1C1_9GAMM Length = 339 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 84/301 (27%), Positives = 134/301 (44%), Gaps = 33/301 (10%) Query: 32 QQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEIS 91 Q M + +Y+ F+ +++ H + +LL +DGP REV+++G+ + Sbjct: 53 QTMRERAPEAHYQGIFVHQAGNESQTVEIVHGTHQDAIWERLLHLDGPVREVIRQGDAVY 112 Query: 92 YFEPGLEPFTLNGDYIVDSLP--SLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVAR 149 P + DS P S +L Y F +G+ RI RL I++V R Sbjct: 113 CIYPDRSVEQIQQK---DSTPFGSNSLGQLNQLQTAYGFRMLGQERIVGRLAMGIQLVPR 169 Query: 150 DGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPP- 208 D R+ Y +W+D ++ +P+R +L+ GE LE+++ F S ++TL+ P Sbjct: 170 DKARHVYQMWIDQQTFVPLRTELMTLKGEILERYQFAYF-------SPVETLSVDAFAPK 222 Query: 209 -----LLSVPVGEKAK------FSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDG 257 L P E K W WLP GF++ ++ P + R+YSDG Sbjct: 223 TPGVELAEAPQDEVLKSTPEDVIEWRLNWLPVGFAD-QGAKGYAPKLSA----RRIYSDG 277 Query: 258 LFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRD----NAEITIVGELPPQTAKRIAENIK 313 + FSV V R G +S +D IT+VGE+P TAKRIAE+++ Sbjct: 278 IVMFSVFVEAVDEIKDQGFARVGPTVLSVMHKDWQDQTHRITVVGEIPAATAKRIAESVE 337 Query: 314 F 314 Sbjct: 338 L 338 >UniRef50_Q2SXT9 Sigma factor algU regulatory protein MucB n=56 Tax=Burkholderia RepID=Q2SXT9_BURTA Length = 351 Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 84/306 (27%), Positives = 150/306 (49%), Gaps = 24/306 (7%) Query: 31 LQQMNLASQSLNYELSFISINKQGVESLRYRH-ARLDNRPLAQLLQMDGPRREVVQRGNE 89 L ++ LA+Q NYE +F+ V+S R H A + ++ +DG R++++ ++ Sbjct: 52 LDRIQLAAQQQNYEGTFVYQRGAYVQSSRIVHVASKGDGEYERVESLDGKPRKLLRHNDD 111 Query: 90 ISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVAR 149 + F P + DS P+L+ +++ Y+ S+GR R+A +V+ +V + Sbjct: 112 LYTFVPERRLCVVERRQNKDSFPALLGASGEQVLSVYEPKSLGRDRVAGLDAQVVELVPK 171 Query: 150 DGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQ----------DISSSMQ 199 D R++Y +W D ++ L +R LD D LEQ IAF+ Q I++ M+ Sbjct: 172 DAYRFAYKLWTDAKTGLLLRSQTLDADDRVLEQ---IAFSQLQLGAAGPSQKTTIAAGMR 228 Query: 200 TLAKANL--PPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDN----MPIESRL 253 L + PP+ V + E + PT GF ++ RRP+ D +P++ + Sbjct: 229 HLGGWTVVRPPVSPVDI-EAQGWQIAPT--VAGFRKIREVRRPMAARDANDPPIPVDQAV 285 Query: 254 YSDGLFSFSVNVNRATPSSTDQML-RTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENI 312 ++DGL + SV + A +S + TG V R + IT++GE PP T ++ A I Sbjct: 286 FTDGLATISVFIEPAEKNSRKEGAGGTGATHVLVKRRGDFWITVLGEAPPATLQQFASAI 345 Query: 313 KFGAAQ 318 ++ A++ Sbjct: 346 EYKASK 351 >UniRef50_C0N4S1 MucB/RseB family n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N4S1_9GAMM Length = 327 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 89/329 (27%), Positives = 159/329 (48%), Gaps = 37/329 (11%) Query: 14 SLLFSANASATPASGA-LLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNR-PLA 71 S+ +SA+ A +L++M A+++L YE F + + ++S+R H R D R + Sbjct: 12 SVAWSASIQANDKEAVQMLERMTEAAKNLTYEGVFAYQSGKTLQSIRIFH-RADARGEVE 70 Query: 72 QLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISV 131 +L+ ++G REV++ + ++ P + ++ + PS + +PYY+ + + Sbjct: 71 RLISLNGAAREVIRSNDMVTCINPEGKQVNVSRRPLGRGFPSDLPRRLSSATPYYE-VGL 129 Query: 132 GRT-RIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNV 190 G T R+A R + + D RY Y +W+D+E+ L ++ +L + GE LE F AF+ Sbjct: 130 GDTDRVAGRQAHELIIKPLDNYRYGYRLWVDSETGLLLKSELRNDQGEVLETF---AFS- 185 Query: 191 NQDISSSMQTLAKANLPPLLSVPVGEK--------------AKFS-----WTPTWLPQGF 231 +S+S+ + + L P ++ GE+ AK + W WLP+GF Sbjct: 186 --SVSTSVH-IPEHKLKPQMN---GEEMTWHRSEPETPMDMAKMTNNVSQWRMQWLPEGF 239 Query: 232 SEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVN--RATPSSTDQMLRTGRRTVSTSVR 289 + V+ R L + +E R+YSDGL S S+ + RA + G ++ Sbjct: 240 ALVAQQTR-LRASNGAAVEQRVYSDGLSSVSIFIEKIRARHDHLNGGSHVGAINAYGTIM 298 Query: 290 DNAEITIVGELPPQTAKRIAENIKFGAAQ 318 +T+VGE+P T ++I I AAQ Sbjct: 299 HAHFVTVVGEVPAVTVEKIGNAITHIAAQ 327 >UniRef50_A4BRZ0 MucB/RseB n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BRZ0_9GAMM Length = 347 Score = 99.8 bits (247), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 87/326 (26%), Positives = 141/326 (43%), Gaps = 26/326 (7%) Query: 6 FAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARL 65 A LV G+ A+A+ + A+ ALLQ+M A + NY + ++++R H Sbjct: 21 LAACLVLGTRA-QADANESQAAQALLQRMMHAVRFTNYVGVCVYRFGDNLQTIRIVHQVK 79 Query: 66 DNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFT----------LNGDYIVDSLPSLI 115 + +L+ ++GP RE+++ + + +P E F + + D+ S+ Sbjct: 80 NGHRYERLISLNGPEREIIRTDAQATRIQPS-EHFIAQNLALLNPPFDTAFSGDTARSVA 138 Query: 116 YTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDR 175 DF Y +G R+A R + +V D RY Y +W+D +S L +R DL+D Sbjct: 139 VDDF--WDNIYGLELLGTDRVAGRETRRLNIVPFDHFRYGYRLWIDEDSGLLLRSDLIDE 196 Query: 176 DGETLEQFRVIAFNVNQDI---------SSSMQTLAKANLPPLLSVPVGEKAKFSWTPTW 226 GE LEQ I +S T + + P + G +W Sbjct: 197 AGEPLEQIMFTRIETPDTIPDQWLESAPNSDAITWHRVHAPHMQR---GTVMASAWMIGD 253 Query: 227 LPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVST 286 LP+GF +PL N IE LYSDGL + SV + + R G + Sbjct: 254 LPEGFKLAFRGHQPLHGERNDFIEHWLYSDGLATVSVYIRPQGRHPFNGWSRMGAVSTFG 313 Query: 287 SVRDNAEITIVGELPPQTAKRIAENI 312 D+ +I +VGE+P T +RI E++ Sbjct: 314 RTLDDYQIIVVGEVPAVTVRRIGESM 339 >UniRef50_C5V4B6 Sigma E regulatory protein, MucB/RseB n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V4B6_9PROT Length = 314 Score = 99.4 bits (246), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 80/310 (25%), Positives = 136/310 (43%), Gaps = 30/310 (9%) Query: 19 ANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDG 78 A+A++ P L+ A NY F+ VE+ R H + +L +DG Sbjct: 17 ADAASIPE---WLKTAAFAGHQTNYSGVFVYQYGNHVETSRISHVVETDSEYEKLESLDG 73 Query: 79 PRREVVQRGNEISYFEPGLEPFTLNGDYI-VDS-----LPSLIYTDFKRLSPYYDFISVG 132 P+RE+++ ++ ++ N + VDS P L+ L+ Y +G Sbjct: 74 PKREIIRHHGQVWCYQ--------NHKMVQVDSQQAGRFPFLLPDQLAALNENYQAKELG 125 Query: 133 RTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQ 192 R+A +V+ RD RY++ +W+ TES L ++ +L+ + +EQ+ + Sbjct: 126 TDRVAGYNAQVVLYQPRDSLRYAHKIWVHTESGLLLKSAVLNEKNQVVEQYAFTELKIGG 185 Query: 193 DISSSMQTLAKANLP------PLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDN 246 DI S ++ A LP P+ S PV W LP GF + RP+ + Sbjct: 186 DIDRSW-VVSSAALPGFGRNKPVQSKPV---VNSGWVVDALPGGFKKTMEIMRPMRG-KH 240 Query: 247 MPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVS--TSVRDNAEITIVGELPPQT 304 P+ ++SDGL + SV + A D T R V+ V D +VGE+PP+ Sbjct: 241 APVSQLVFSDGLSAISVFIEPADADEDDNEGLTSRGAVNLYHKVVDKHLYNVVGEVPPRA 300 Query: 305 AKRIAENIKF 314 ++ ++I+F Sbjct: 301 VMQVLDSIRF 310 >UniRef50_Q1YS35 MucB/RseB n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YS35_9GAMM Length = 347 Score = 99.4 bits (246), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 83/306 (27%), Positives = 145/306 (47%), Gaps = 27/306 (8%) Query: 21 ASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPR 80 A+ ++ L+ +M AS+ LNY+ F + + S++ HA D + ++ MDG + Sbjct: 27 AAQMESAHDLISKMAKASRELNYQGLFTYEYRGNLTSVKLTHAVQDGQIYERMQHMDGVQ 86 Query: 81 REVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRL 140 R ++R + + G L G S L + RL +Y+F G+ RIA+R Sbjct: 87 RNALRRTDNVDCLRTG--DMLLRG-----SAYRLNDQSYARLEDFYEFHIKGQGRIANRQ 139 Query: 141 CEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDIS----- 195 +I V+ +D RY Y+V +D ES L ++ L+ G+ LE+F+ + + ++ Sbjct: 140 VVMIHVLPKDKHRYGYVVAIDKESGLLLQSVLMSHTGKPLERFQFVDIQIGGSMAELGFD 199 Query: 196 SSMQTLAKANLPPLLSVPVGEKAKFS---WTPTWLPQGFSEVSSSRRPLPTMDNMPIESR 252 S + L + + S W+ W+P GF V +S + +DN ES Sbjct: 200 SEASDFSDVALDQGNCIDSNSQITTSASRWSTQWMPPGF--VMASHK---LVDNQGQESM 254 Query: 253 LYSDGLFSFSVNVN----RATPSSTDQMLRTGRRTVSTSVRDNAE--ITIVGELPPQTAK 306 +++DGL FSV ++ R+ P + + L ++ + +N E I +VGE+P TA Sbjct: 255 MFTDGLAVFSVFIDIDKARSLP-AIEANLGATVAVLTKAEINNQEYAICVVGEIPRATAS 313 Query: 307 RIAENI 312 +IA I Sbjct: 314 QIASAI 319 >UniRef50_Q608M1 Putative sigma-E factor regulatory protein n=1 Tax=Methylococcus capsulatus RepID=Q608M1_METCA Length = 332 Score = 98.6 bits (244), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 136/300 (45%), Gaps = 21/300 (7%) Query: 31 LQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEI 90 L M A L+Y + V + + H+ + +L ++ P RE+V+ G+ + Sbjct: 41 LTGMREAMSRLSYRGRVAYLKDDKVNGMEFVHSMANGVEHERLTSLNSPMREIVRDGDRV 100 Query: 91 SYFEPGL-----EPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIR 145 +F P E ++ ++VD LP F L YY F+ + +A R + I Sbjct: 101 QFFFPETKSVMTERVPVSRSFLVD-LPE----SFVGLCDYYAFLVGDQEYVAQRHTQTIE 155 Query: 146 VVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQT--LAK 203 +V D RY VW+DTES+LP+R +LLD + + +EQ I+ V+ + T A Sbjct: 156 IVPVDDYRYGRKVWIDTESRLPLRFELLDENSKPVEQMVFISLEVSGEAPGREVTPMPAS 215 Query: 204 ANLPPLLS----VPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLF 259 + S +P+ W+ +P GF SR P + + PIE L SDGL Sbjct: 216 GDYSEQSSNREIIPI---EAMDWSLDSVPVGFRISGYSRVQHPPLRH-PIEHILLSDGLS 271 Query: 260 SFSVNVNRATPSS-TDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFGAAQ 318 S S+ V+ +++ + G T D +T++GE+PP+T IA I+ ++ Sbjct: 272 SVSIYVDEPKDEPFVEKLKKIGAVNAYTRKIDGFVVTVMGEVPPKTVHMIANGIQHQKSK 331 >UniRef50_C6X6N7 Sigma E regulatory protein, MucB/RseB n=2 Tax=Methylophilaceae RepID=C6X6N7_METSD Length = 322 Score = 97.8 bits (242), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 80/324 (24%), Positives = 142/324 (43%), Gaps = 14/324 (4%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 MK+ LV+ L +A AT +LQ+ A++ L+Y+ F+ + G S++ Sbjct: 1 MKRGVLGFLLVSHVALATAAGEATGDPWMVLQKAAQAARELSYQGVFVYQSGTGSRSVQI 60 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 H A+++ +DG REV+ +G ++ F P E + + P+++ ++ Sbjct: 61 THMNYGQGEYARIVVLDGTPREVLSQGRDVVIFSPRNEKVVIEKRRGQNMFPAVLPSNLD 120 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 + YD G RI R +++ + +D RY+Y W D E L ++ + E + Sbjct: 121 AIKSSYDVKFGGTERIGGRDGQMVILSPKDKFRYTYKFWADREYGLLLKSMSANERNEPM 180 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKA--------KFSWTPTWLPQGFS 232 EQF AFN ++S + N+ P + E +WT LP G+ Sbjct: 181 EQF---AFNQLTLMNSQKMDWFQPNVSPEKQYVMEESGAGRSEPVEAITWTVEQLPSGYR 237 Query: 233 EVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRT--GRRTVSTSVRD 290 +V R +P P+ +YSDGL S S+ + ++ + G +V + Sbjct: 238 KVDEITRLVPG-KPAPVTQIVYSDGLASVSLFIEPLLKGMAPKVGHSAFGATHFYANVLE 296 Query: 291 NAEITIVGELPPQTAKRIAENIKF 314 ++ +VGE+P T +IA I F Sbjct: 297 GHQVVVVGEVPEATVTQIANTIHF 320 >UniRef50_C5SBU2 Sigma E regulatory protein, MucB/RseB n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SBU2_CHRVI Length = 337 Score = 96.3 bits (238), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 84/315 (26%), Positives = 141/315 (44%), Gaps = 25/315 (7%) Query: 1 MKQLWFAMSLVTGSLLFSA---NASATPASG-------ALLQQMNLASQSLNYELSFISI 50 + W A+ L L F A A+A+P + LL +M A +SL+YE + + + Sbjct: 15 LASYWLALGLCC-LLPFQAVVAEATASPDTAESRLSPKVLLARMTEAVRSLSYEGTLVYL 73 Query: 51 NKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTL--NGDYIV 108 ++ +E+L H D + +L+ + GP R V + ++ +P ++ G + Sbjct: 74 HQNQLETLSLDHRIADGQVEERLIALSGPIRAVASGKDRVNCVLTDGQPISVERQGGRFL 133 Query: 109 DSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPM 168 D+ D L +Y +GR RIA R EV+ ++ RD RY Y +D E+ LP+ Sbjct: 134 DTE----GIDPGALQDHYSVEYLGRARIAGRETEVVGILPRDDLRYGYRFHIDRETALPL 189 Query: 169 RVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFS--WTPTW 226 + DL+DR E LEQ + +N + +T P+ SV + S W Sbjct: 190 KSDLIDRHQEPLEQLMFTSIKLNAPAAPGSETPPD----PVRSVRGAPATRPSSQWRFEP 245 Query: 227 LPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVST 286 +P GF V + + D +E L++D L S+S+ + A+ + G + Sbjct: 246 MPAGFELVMQHQ--IDQADGSRVEHFLFTDRLSSYSIYIEPASDDGLEGGANIGSVHAAG 303 Query: 287 SVRDNAEITIVGELP 301 D +IT VGE+P Sbjct: 304 RRFDEHQITAVGEVP 318 >UniRef50_D0WVV8 Sigma-E factor regulatory protein rseB n=1 Tax=Vibrio alginolyticus 40B RepID=D0WVV8_VIBAL Length = 123 Score = 95.9 bits (237), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 49/122 (40%), Positives = 75/122 (61%), Gaps = 2/122 (1%) Query: 198 MQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDG 257 M L LP +L++P G+ +W W+P+GF +R + + M +ES+LYSDG Sbjct: 1 MSGLQDVQLPAVLTMPKGDIGTSNWQVGWIPEGFEPNELNRYRMAVTNQM-VESQLYSDG 59 Query: 258 LFSFSVNV-NRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFGA 316 LFSFSV V N+ S Q++R GRRT+ + V EI++VG++PP TA+RIA+++ F Sbjct: 60 LFSFSVYVANKDEHSLKGQLVRQGRRTLHSFVSGQHEISVVGDIPPTTAQRIAQSVTFNV 119 Query: 317 AQ 318 + Sbjct: 120 TK 121 >UniRef50_Q6SFI4 MucB/RseB family protein n=1 Tax=uncultured marine bacterium 580 RepID=Q6SFI4_9BACT Length = 314 Score = 95.1 bits (235), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 80/293 (27%), Positives = 139/293 (47%), Gaps = 12/293 (4%) Query: 29 ALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGN 88 ++L++ ASQ LNYE F S + S HA +DN+ L +DG EV G+ Sbjct: 27 SILEKSAKASQQLNYEGVFHSQSSSESNSTHVIHANIDNKEYCLLKMLDGAPNEVFCSGD 86 Query: 89 EISYF-EPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVV 147 + + GL ++ PS++ +D K L Y + R+ADR+ + I + Sbjct: 87 MVYVTSQDGLLIKKRKNQFL---FPSVLPSDIKHLKKNYQLSFGEKKRVADRMAQHIELK 143 Query: 148 ARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQ--FRVIAFN--VNQDISSSMQTLAK 203 A+D R++Y +W+D ++ LP+++ + + + +EQ F IAF+ +++DI L+K Sbjct: 144 AKDNLRFNYHIWIDEKNLLPLKLIVTNNKNQPIEQSTFTTIAFSEVIDKDIFEKNINLSK 203 Query: 204 ANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSV 263 + + KF W LP GF EV R + + N+ ++SDGL S+ Sbjct: 204 IYVSKNKFIENYVSNKF-WNLKDLPSGFKEVDLISRRVNGL-NLLDYQIIFSDGLAYVSL 261 Query: 264 NVNRATPSS--TDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKF 314 + T + + + G +S +D +I VG +PP+T + I+F Sbjct: 262 FIRPITRGTEPKEGTVAIGPTNISARYQDGYQIMSVGMVPPETVNTFSGAIEF 314 >UniRef50_B8GPK4 Sigma E regulatory protein, MucB/RseB n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GPK4_THISH Length = 324 Score = 94.0 bits (232), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 87/318 (27%), Positives = 153/318 (48%), Gaps = 24/318 (7%) Query: 14 SLLFSANASATPA-SGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQ 72 LL S++A A + ALL +M A +SL+YE +F+ I+ Q E+++ H R + + Sbjct: 14 GLLASSHAWADDHRADALLDRMIEAVRSLSYEGTFVYIHGQKTETMQIVHTRDERGERER 73 Query: 73 LLQMDGPRREVVQRGNEISYFEPG-----LEPFTLNGDYIVDSLPSLIYT-DFKRLSPYY 126 LL + G REV++ + ++ P +EP + LP+ I F SPY Sbjct: 74 LLSLTGEPREVIRDEDVLTCVWPASRSVVIEPRRSR----LGGLPAAIPDRKFGPDSPYR 129 Query: 127 DFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVI 186 F G RIA C ++++ D RY + + ++ +S + ++ ++LD G T+EQF Sbjct: 130 -FQVEGEQRIAGLSCRTLQIIPNDDLRYGHRLCINEDSGMLLKSEMLDHQGNTIEQFMFT 188 Query: 187 AFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTW----LPQGFSEVSSSRRPLP 242 + D + + + V +++ + P W +P GF S S+RP+ Sbjct: 189 SIQF-PDYVPDDRFIPVMKGEGFTTHRVDAQSEMNPDPGWRVRDIPDGFRVASVSKRPMA 247 Query: 243 TMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQML----RTGRRTVSTSVRDNAEITIVG 298 N P++ + SDGL + SV ++RA SS D + ++G ++T+VG Sbjct: 248 ANLN-PVQHLVLSDGLATVSVFISRA--SSLDDLYMGVTQSGALHAMAVPAGEYQVTVVG 304 Query: 299 ELPPQTAKRIAENIKFGA 316 E+P T + IA+++ A Sbjct: 305 EVPEATIRMIADSVYHEA 322 >UniRef50_A0YCK6 Sigma factor algU negative regulatory protein MucB n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YCK6_9GAMM Length = 331 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 69/299 (23%), Positives = 132/299 (44%), Gaps = 25/299 (8%) Query: 31 LQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEI 90 L +M+ + + L+Y +F ES R H+ +D +L +DG +RE+V+RG+ + Sbjct: 39 LSRMSHSFRELDYHGTFSFQRGSSTESFRIAHSVIDGEEFERLEYLDGEKREIVRRGHHL 98 Query: 91 SYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARD 150 + PG + + L + + +Y+F G R+A R ++++ +D Sbjct: 99 NCIHPGHKLLR----FYQQQQAQLGSSANAGVGSFYEFAVNGTGRVAGREVVNLQIIPKD 154 Query: 151 GTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANL---- 206 R+ + + +D E+ L +R +L+ LE+F+ + + + ++ A A+ Sbjct: 155 THRFEHHLSLDKETGLLLRTELIGPGKTVLERFQFVEITIGEPLAGEQFVDAGASYQAYH 214 Query: 207 --PPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVN 264 P + + G WT W+P GF+ ++ + T D ++DGL FSV Sbjct: 215 TEPSVTANVAGNTVGDGWTVQWMPTGFTSTVANVK-FVTGDIAT-----FTDGLTVFSVF 268 Query: 265 ---------VNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKF 314 V R + T + IT+VGE+P QTA++IA++++ Sbjct: 269 LESDVDLNLVQRGLEGRAQKGATTAYTRLLVLADRPHRITVVGEIPAQTAQQIAQSVRL 327 >UniRef50_A1WT21 Sigma E regulatory protein, MucB/RseB n=1 Tax=Halorhodospira halophila SL1 RepID=A1WT21_HALHL Length = 329 Score = 93.6 bits (231), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 84/324 (25%), Positives = 134/324 (41%), Gaps = 19/324 (5%) Query: 5 WFAMSLVTGSLLFSANASATPASGA----------LLQQMNLASQSLNYELSFISINKQG 54 WF +L+ L + AN A G L +M A +YE F+ Sbjct: 8 WFLRALLCAGLFWIANGQVALAEGTDRGAGEEGREALNRMVEALDQHSYEGIFVYARAGV 67 Query: 55 VESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSL 114 VE++ H D+ +L + G RE+++ P + L G +V SL Sbjct: 68 VETVHIVHRAGDSGRHQRLEMLTGSHREMIRTPEGALLAGPIAKGDRLRGSGVVTSLGEG 127 Query: 115 IYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLD 174 Y G R+A R VI V D RY + +W+D ES LP+ LLD Sbjct: 128 WPRADSISEDLYRIQLQGEGRVAGRPTTVIAVEPLDQLRYGHRLWVDEESGLPLHAQLLD 187 Query: 175 RDGETLEQFRVIAFNVNQDI-SSSMQTLAKANLPPLLSVPVGEKAKFSWTPTW----LPQ 229 +E+ +F + DI + ++ + +A + + E++ S P W +P Sbjct: 188 GR-RVIERLLFTSFTLRDDIDAEELEPVGEAQR--RVERRLAEESDDSGEPEWEVIDVPA 244 Query: 230 GFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVR 289 GFS ++ R P P PIE L+SDGL S SV + P + R G Sbjct: 245 GFSRIAHGRIPSPEPGQDPIEHLLFSDGLASVSVYIA-PEPGGNEGQARAGALHAYERPV 303 Query: 290 DNAEITIVGELPPQTAKRIAENIK 313 ++ ++T +G++P +T +R A + Sbjct: 304 EDHQVTAIGDVPAKTVERFARQTR 327 >UniRef50_A6SXQ7 Sigma-E factor negative regulatory protein RseB n=3 Tax=cellular organisms RepID=A6SXQ7_JANMA Length = 340 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 72/325 (22%), Positives = 138/325 (42%), Gaps = 20/325 (6%) Query: 10 LVTGSLLFSANASATPASG--------ALLQQMNLASQSLNYELSFISINKQGVESLRYR 61 L + + F+A A AS L+++ ++Q LNY +F+ V + R Sbjct: 13 LFSSVIAFTAQAENVGASHEHDAHDTQVWLKKIQSSAQKLNYSGTFVYQQGSQVRTSRIT 72 Query: 62 HARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKR 121 H L +L +DG RE ++ EI+ + P + + D P+++ Sbjct: 73 HIFNGKNELEKLEILDGKPREYIRNNEEIACYVPENKSIRVEKRVTKDVFPAILGASPAD 132 Query: 122 LSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLE 181 L+ +Y+ R+A C+ I + +D RY Y +W + + L ++ ++ + +E Sbjct: 133 LAEHYNLKKGETGRVAGYDCQAIILEPKDKLRYGYKLWAEKSTGLLLKAQTVNEKNDVVE 192 Query: 182 QFRVIAFNVNQ-DISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRR- 239 Q ++ D S + + + + E WT +P GF ++ +R Sbjct: 193 QIAFTQLSIGHIDPSRVKSSFPNTQGWRVENAVMSETNLSGWTVKDIPPGFKKIREMKRL 252 Query: 240 -----PLPTMDNMPIESR-----LYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVR 289 P +N P R +YSDGL + SV + T S T+ ++ G + + Sbjct: 253 ITDTAPANAAENTPPTQREVSQIVYSDGLAAISVFIESGTQSRTEGSMQQGAMNIVGKRQ 312 Query: 290 DNAEITIVGELPPQTAKRIAENIKF 314 + +T+VGE+P K+++ +I+F Sbjct: 313 GDYWLTVVGEVPAAAIKQVSNSIEF 337 >UniRef50_P38108 Sigma factor algU regulatory protein mucB n=27 Tax=Pseudomonadaceae RepID=MUCB_PSEAE Length = 316 Score = 92.4 bits (228), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 76/252 (30%), Positives = 117/252 (46%), Gaps = 14/252 (5%) Query: 72 QLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDS-LPSLIYTDFKRLSPYYDFIS 130 +LLQ+DG R+EVV+ GL D + D+ L + D +L+ +YD Sbjct: 70 RLLQLDGARQEVVRVDGRTQCISGGL------ADQLADAQLWPVRKFDPSQLASWYDLRL 123 Query: 131 VGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNV 190 VG +R+A R V+ V RD RY + + +D ++ LP++ LL+ G+ LE+F+ N Sbjct: 124 VGESRVAGRPAVVLAVTPRDQHRYGFELHLDRDTGLPLKSLLLNEKGQLLERFQFTQLNT 183 Query: 191 NQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIE 250 + Q A A + + +W WLP GF+ S R P + P+ Sbjct: 184 GA-APAEDQLQAGAECQVVGPAKADGEKTVAWRSEWLPPGFTLTRSFMRRSPVTPD-PVA 241 Query: 251 SRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVR----DNAE-ITIVGELPPQTA 305 Y DGL FSV + + TV S R D + +T+VGE+P TA Sbjct: 242 CLTYGDGLARFSVFIEPLHGAMVGDARSQLGPTVVVSKRLQTDDGGQMVTVVGEVPLGTA 301 Query: 306 KRIAENIKFGAA 317 +R+A +I+ AA Sbjct: 302 ERVALSIRPEAA 313 >UniRef50_B3PJ99 Sigma factor algU regulatory protein MucB n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PJ99_CELJU Length = 332 Score = 91.7 bits (226), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 82/300 (27%), Positives = 136/300 (45%), Gaps = 33/300 (11%) Query: 28 GALLQQMNLASQSLNYELSFISINKQ--GVESLRYRHARLDNRPLAQLLQMDGPRREVVQ 85 +LL +M S +NY+ +F +K ++ R H D +L ++GP RE+ + Sbjct: 48 ASLLAKMATRSHQVNYQGTFTYQHKDNPALQGFRIFHWVEDGIQYERLQHLNGPEREISR 107 Query: 86 RGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIR 145 G L+ +L GD ++ + +L+ Y F G R+A R V+ Sbjct: 108 SGR-------ALDCKSL-GDQLLQGKILNMGARLAQLTELYRFEIRGIERVAGRNATVLL 159 Query: 146 VVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKAN 205 + D RYSY + +D E+ L ++ L+D LE+++ + +N D+ + ++ L K Sbjct: 160 AIPLDNYRYSYFLSIDNETGLVLKSWLVDESARPLERYQFVELELNPDL-TQIKQLPKPR 218 Query: 206 LPPLLSVPVGE------KAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLF 259 L + V E K W W P GF V + D+ I+ +Y+DGL Sbjct: 219 LHRDADIAVPECNPSDVKEPSGWHLNWAPPGFVFVGQKQ----VRDH--IDMLMYTDGLT 272 Query: 260 SFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEI-------TIVGELPPQTAKRIAENI 312 SFS+ + PSS +R + + D EI T+VGE+P TA++IA+NI Sbjct: 273 SFSIFIE---PSSQASPEGVAQRGATLAAMDQLEIGSERYRVTVVGEIPVVTAQKIAQNI 329 >UniRef50_Q1H2L7 Sigma E regulatory protein, MucB/RseB n=1 Tax=Methylobacillus flagellatus KT RepID=Q1H2L7_METFK Length = 316 Score = 90.9 bits (224), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 72/297 (24%), Positives = 129/297 (43%), Gaps = 20/297 (6%) Query: 30 LLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNE 89 +LQ+ A+ L+Y+ FI ++S++ H A+++ +DG REV+ +G + Sbjct: 27 VLQKAARAAHELSYKGVFIYQAGDNIKSVQITHTNSGQGEYARMVVLDGAPREVLSQGGD 86 Query: 90 ISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVAR 149 + F E + + P+++ D + L Y G RIA R V+ + R Sbjct: 87 VVIFSSKNEKVIMEKRRAHNLFPAVLPDDMELLKANYQARIGGTERIAGRAGRVVFLDPR 146 Query: 150 DGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDIS----------SSMQ 199 DG RY+Y W D E L ++ +L + LEQ N+ ++ S Sbjct: 147 DGLRYAYKFWADCEYGLLLKSLMLSEQKQMLEQMAFSQLNMMEEQGMDWFHPSVDHSKHY 206 Query: 200 TLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLF 259 L +AN + + +WT LP G+ +V R +P + P+ +++DGL Sbjct: 207 ILEEANAQLV-------QEASNWTVGALPVGYRKVEQVTRLVPG-KSAPVTQVIFTDGLA 258 Query: 260 SFSVNVNRATPSSTDQMLRT--GRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKF 314 S S+ + + ++ +T G +V +I +VGE+P T +I + F Sbjct: 259 SVSLFIEPLSKGVRPRIGQTSKGATHFYANVSKGHQILVVGEVPAATVAQIGSAVSF 315 >UniRef50_A6VUA2 Sigma E regulatory protein, MucB/RseB n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VUA2_MARMS Length = 321 Score = 90.5 bits (223), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 79/311 (25%), Positives = 138/311 (44%), Gaps = 11/311 (3%) Query: 3 QLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRH 62 ++F + +T S + S ++ TP + LL+ M + +L+Y+ F+ + S+R RH Sbjct: 8 HIFFTLVCLTISGI-SVASNTTPDALHLLRSMTQSFSTLSYDGVFVHSEAMNMNSMRVRH 66 Query: 63 ARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRL 122 + L+ +DG + EV++ ++I P + +V + RL Sbjct: 67 DLMGGVEYESLVDLDGDKIEVLRIDDKIISVYPNALVANMRAP-LVPPFKRFKDVESDRL 125 Query: 123 SPYYDFISVGRT-RIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLE 181 YD I T RIA R +++V +D RY + W+D E+ ++ D++ DG+ LE Sbjct: 126 IKGYDMIVDDHTSRIAGRKVISVKLVPKDQYRYGHQFWLDEENHFLLKHDMMKTDGKLLE 185 Query: 182 QFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPL 241 + + + N D+ + + + + K W WLP+GFS V R L Sbjct: 186 RIQFASVNFAPDLKDKDFVPKEGSYAEPVVETQPRRVKNLWQFDWLPEGFSLVWPEARSL 245 Query: 242 PTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTV---STSVRDNAE-ITIV 297 N L SDG+ + S+ V S T +L G S V+D +T+V Sbjct: 246 ----NHGTSMLLLSDGMATVSIFVEPTMKSKTMSILNMGATIAGERSIKVKDQLYLLTMV 301 Query: 298 GELPPQTAKRI 308 GE+P T +++ Sbjct: 302 GEVPEPTIEKL 312 >UniRef50_Q3SH43 Putative Sigma E regulatory protein, MucB/RseB n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SH43_THIDA Length = 318 Score = 89.4 bits (220), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 77/294 (26%), Positives = 129/294 (43%), Gaps = 10/294 (3%) Query: 12 TGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLA 71 G +L S A A A LQ+ A++ NY ++ + VE LR H R Sbjct: 17 AGLMLLSGLARANSAL-EWLQRAASAAKEQNYSGIYVYHHGDEVEVLRVLHRNDGRREQE 75 Query: 72 QLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISV 131 + MDG +R ++ +++ + L + P+ + L+ Y+ Sbjct: 76 KTEVMDGTQRHFLRVNSDVYCHLADGKQVRLERNASRRFFPAFLPARAAGLAELYEVKLG 135 Query: 132 GRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVN 191 G R+A R C+V+ + RDG R+++ +W+D+ + LP++ +++ DGE + F + Sbjct: 136 GVERVAGRPCQVVMLEPRDGYRHAFQLWLDSRTGLPLKSRIVNSDGEVVSMFVFSEVQIG 195 Query: 192 Q--DISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPI 249 + D S LA + V +G++ W+ T P GF V + R LP N P+ Sbjct: 196 RPPDASLFRNELAGKQVQ---QVSLGQRIDLPWSVT-PPPGFERVQEAVRTLPGR-NTPV 250 Query: 250 ESRLYSDGLFSFSVNVNRATPS--STDQMLRTGRRTVSTSVRDNAEITIVGELP 301 ++SDGL S+ + A P S + G V D IT VGE+P Sbjct: 251 THLVFSDGLSVLSMFIEPADPGVPSLQGLSAEGAIGVYARALDGHTITTVGEVP 304 >UniRef50_Q0PQN8 MucB (Fragment) n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=Q0PQN8_9GAMM Length = 232 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 60/208 (28%), Positives = 101/208 (48%), Gaps = 12/208 (5%) Query: 66 DNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPY 125 D + L+ ++G REV++ I+ P + +++ + L+ D +L+P+ Sbjct: 5 DGQIREHLISLNGAPREVIRDKRSITCVRPESQQISIDKRPPSNKFLDLLPQDLDKLTPH 64 Query: 126 YDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQ--- 182 Y F ++G RIA +V+ ++ RD RY Y ++D ES LP++ DL+D G+ LEQ Sbjct: 65 YAFRTLGTARIAGHQSKVVAIIPRDDYRYGYRFYLDQESALPLKSDLMDEQGQALEQTMF 124 Query: 183 ----FRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSR 238 V +N+++ T+ K++LP E + W LP GF S SR Sbjct: 125 TSLEIGVAEWNIDESNKQRGITIRKSDLP----RSEIESDRPQWHFESLPAGFVVTSRSR 180 Query: 239 RPLPTMDNMPIESRLYSDGLFSFSVNVN 266 P T + I+ + SDGL S S+ + Sbjct: 181 VP-DTANGGVIDHYVLSDGLASLSIFIE 207 >UniRef50_Q3J8C9 Sigma E regulatory protein, MucB/RseB n=2 Tax=Nitrosococcus oceani RepID=Q3J8C9_NITOC Length = 350 Score = 89.0 bits (219), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 80/345 (23%), Positives = 152/345 (44%), Gaps = 55/345 (15%) Query: 8 MSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDN 67 ++++ SL ++ ++ + L+ +M A++SLNY+ F+ + +++++ H + Sbjct: 17 LTILATSLPSASLGKSSDTALQLIDRMGKAAESLNYQGVFVYLQNSRLKAVQVIHKVDEY 76 Query: 68 RPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVD--------------SLPS 113 +L+ ++G RE+++ ++ P + ++ D L Sbjct: 77 GEHERLVSLNGMPREIIRNNELVTCILPEDKAVLVDEHRYPDKAVVARSKSFRSNNGLSR 136 Query: 114 LIYTDFKRLSPYYDFISVGR-TRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDL 172 + K + +Y F S+G+ RIA R + + +V RD RY Y +W+D E+ L ++ + Sbjct: 137 RLPAKLKAMREHYQF-SLGKPDRIAGRETQQVVIVPRDQYRYGYHLWIDRETGLLLKTVM 195 Query: 173 LDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTP-------- 224 + G+ LEQ + L A +P VP +FSW Sbjct: 196 TEDGGQILEQMMFTSL------------LLPAKIPDTELVPTVAGREFSWREGESLSMDP 243 Query: 225 ---------TWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSV------NVNRAT 269 WLP GF+ V+ SR LP P+E +YSDGL S S+ + R+ Sbjct: 244 DNHESKWKIGWLPAGFALVAHSRDLLPN-SQAPVEHMVYSDGLSSVSIFIEPVRHTKRSH 302 Query: 270 PSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKF 314 S M G +++ +T+VGE+P T +R+ ++I++ Sbjct: 303 LSGFSSM---GAVNAYGTIQALHYLTLVGEVPHITVERMGKSIRY 344 >UniRef50_A1U2X0 Sigma E regulatory protein, MucB/RseB n=3 Tax=Marinobacter RepID=A1U2X0_MARAV Length = 352 Score = 87.4 bits (215), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 76/312 (24%), Positives = 137/312 (43%), Gaps = 28/312 (8%) Query: 18 SANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMD 77 + + PA+ A L+++ A +Y F+ + V S+R H + R +L+ D Sbjct: 36 TTKSGEAPAAMAWLERLGPALNMTSYRGVFVYARGEQVHSMRIAHRYRNGRVEERLVMQD 95 Query: 78 GPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLP--SLIYTDFKRLSPYYDFISVGRTR 135 G E+V++G + P L D ++ S P + +Y G R Sbjct: 96 GGSGEIVRKGMNVVCVLPDRGRVRL--DEVIPSGPFAEAFTSQLMPFGRWYLPELAGEDR 153 Query: 136 IADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDIS 195 +A ++ + ARD RYS+ +W++ E+ L ++ + D +GE LE F+ + DIS Sbjct: 154 VAGYDVVIVALGARDDDRYSHRLWLEKETGLLVKSQVRDVNGEVLEHFQFTDLEITDDIS 213 Query: 196 SSMQTLAKANLPPLLSVPVGEKAKFS------WTPTWLPQGFSEVSSSRRPLPTMDNMPI 249 + ++ G K + S WT +W P+GF ++ R + Sbjct: 214 DEELEVQTRGREISRTLDDGRKQESSVGRMNGWTLSWQPEGFVPAAAPR-------SGSG 266 Query: 250 ESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAE--------ITIVGELP 301 ++ +SDGL +FSV V P +M R +T++ I +VGE+P Sbjct: 267 KAVAFSDGLAAFSVFVE---PVGRLKMPTGASRIGATTIYMREVMVSDRPFLIAVVGEIP 323 Query: 302 PQTAKRIAENIK 313 P TA+++A+ ++ Sbjct: 324 PGTARKVADAVE 335 >UniRef50_Q0A8Z7 Sigma E regulatory protein, MucB/RseB n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A8Z7_ALHEH Length = 339 Score = 86.7 bits (213), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 78/299 (26%), Positives = 134/299 (44%), Gaps = 27/299 (9%) Query: 30 LLQQMNLASQSLNYELSFISINKQGVESLRYRH-ARLDNRPLAQLLQMDGPRREVVQRGN 88 LL+++ + L+Y + + +E+LR H ++ + + G REV+++ + Sbjct: 42 LLERIGEQTPQLHYHGILVYRHGGDMETLRIIHRGGAEHERSERFYTLTGIPREVIRKPD 101 Query: 89 EISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVA 148 E+ P E + + + + + + L Y+ G R+ADR + + +V Sbjct: 102 EVICILPDAEAVVVGRRQLRNPIAQALPRYTEALQEAYEVTLAGEGRVADRDAQQVLIVP 161 Query: 149 RDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPP 208 RD RY + +W+D L +R DLLD + LEQ V ++ + A L P Sbjct: 162 RDDLRYGHRLWIDEAYGLLLRADLLDEHQQVLEQVMFTEVTV-------VEAVPDAWLEP 214 Query: 209 LLS------VPVGEKAKFS-----WTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDG 257 +S V ++A + W +P GF +S +R + D P+E YSDG Sbjct: 215 GISGESFTWVRPADRADAAPEQRRWQVAEVPPGFRLISHRQRQIAGHDP-PVEHLHYSDG 273 Query: 258 LFSFSVNVNRATPSSTDQML-RTGRRTVSTSV---RDNAEITIVGELPPQTAKRIAENI 312 L S SV V +P + D++ R R + +V RD +T+VGE+P T AE + Sbjct: 274 LASVSVYV---SPQAADKVRERAARMGLMGAVRVPRDGFTVTVVGEVPRATLHLFAERL 329 >UniRef50_A3Y8F0 MucB/RseB n=1 Tax=Marinomonas sp. MED121 RepID=A3Y8F0_9GAMM Length = 317 Score = 85.9 bits (211), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 82/314 (26%), Positives = 144/314 (45%), Gaps = 24/314 (7%) Query: 8 MSLVTGSL--LFSANASATPASG-ALLQQMNLASQSLNYELSFISINKQGVESLRYRHAR 64 +SLVT +L L + A G L+ +M A +L+YE F+ + + S++ RH+ Sbjct: 6 ISLVTITLVSLLVTSVKAQENPGLVLMNRMVEAFSTLSYEGVFVRSHDSHMNSMQVRHSV 65 Query: 65 LDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSP 124 +D LL +DG + EV++ + + P + F N D I + +RL Sbjct: 66 IDGVEYESLLDLDGEKIEVIRIDDSVICVYPNMS-FANNADPITTPFKRFEEFNGERLLK 124 Query: 125 YYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFR 184 Y+F+ + +A R + + + RD RY + W+D E+ ++ D L G+ L++ + Sbjct: 125 GYNFVVTKQGLVAGRRAQKLELRPRDQYRYGHEFWLDIETGFLLKHDTLKSSGKILDRVQ 184 Query: 185 VIAFNVNQDISSS-----MQTLAKANLPPLLSVPVGEKAKFS-WTPTWLPQGFSEVSSSR 238 + NV+ ++S + M T A+ + V K+ S W WLP GF+ V Sbjct: 185 FTSLNVSPNLSKNDFVPRMGTYAEH------VIEVTPKSIPSHWVFDWLPAGFAPVWRGA 238 Query: 239 RPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVS--TSVRDNAE--I 294 R + DN + L SDG+ S S+ + S ++ G TS+ + + Sbjct: 239 RQIN--DNASM--MLLSDGMTSVSIFIESTKESKPLTVMSMGSTIAGEKTSMMNGKPFLL 294 Query: 295 TIVGELPPQTAKRI 308 T VGE+P T +++ Sbjct: 295 TAVGEVPDATIRKL 308 >UniRef50_C6P3S1 Sigma E regulatory protein, MucB/RseB n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P3S1_9PROT Length = 325 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 70/301 (23%), Positives = 129/301 (42%), Gaps = 23/301 (7%) Query: 31 LQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEI 90 L+ M A+ +Y F+ + VE R H +L + G RRE+++ +++ Sbjct: 32 LKTMAFAAHQTDYSGVFVYQSGGRVEMSRITHVSDSAGEHERLEGIGGERRELIRDNDQV 91 Query: 91 SYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARD 150 + G + I S P+L+ L Y +A + + RD Sbjct: 92 WLYTDG-HKVRVEKRQIKRSFPALLPEQISLLKENYSVTQAEEDEVAGYHAHAVVFLPRD 150 Query: 151 GTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDI-----------SSSMQ 199 RY+ +W D++S L ++ +L+ G +EQ+ + N+ +I ++ +Q Sbjct: 151 NLRYARKLWADSDSGLLLKAVVLNDRGLVIEQYAFMQLNIGGNIDRKWIVQDKPSAAMVQ 210 Query: 200 TLAKANLPP--LLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDG 257 L + LP LL P G W LP GF ++ RRP I+ ++SDG Sbjct: 211 ELHLSPLPKVELLEEPCG------WQVDALPSGFKKILEMRRPFRANKEHVIQM-VFSDG 263 Query: 258 LFSFSVNVNRATPSSTDQMLRTGRRTVSTSVR--DNAEITIVGELPPQTAKRIAENIKFG 315 L SV + ++ +S +G+ V R + IT+VGE+P +T ++ +++++ Sbjct: 264 LAGISVFIEKSQDASYLHSGLSGQGAVHIYNRIVGDHLITVVGEVPSRTVIQVGDSVRYA 323 Query: 316 A 316 Sbjct: 324 G 324 >UniRef50_A4BBJ2 Sigma factor algU negative regulatory protein MucB n=1 Tax=Reinekea blandensis MED297 RepID=A4BBJ2_9GAMM Length = 317 Score = 84.7 bits (208), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 81/305 (26%), Positives = 137/305 (44%), Gaps = 30/305 (9%) Query: 30 LLQQMNLASQSLNYELSFISINKQGVESLRYR--HARLDNRPLAQLLQMDGPRREVVQRG 87 +L+ M A Q +Y ++ +++G S Y H D L Q+DG EV+++G Sbjct: 24 MLEDMRQAVQQQSYRGEYL--HRRGDHSSVYSVVHRFEDGVSQELLRQLDGDMIEVLRQG 81 Query: 88 NE-ISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRV 146 +E I Y P LN + + + ++ +Y SVG R+A +I + Sbjct: 82 DERICYLPPDARG-ALNNALPAAPFSQVEVLNLQTIADHYQASSVGSERVAGYQASIIEL 140 Query: 147 VARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDI------------ 194 D RY +W++ ++ L ++ +L+ +G LEQFR + ++ Sbjct: 141 KG-DDWRYRQRLWLEKQTGLLLQSELIGPEGVVLEQFRFTRLELGVEVLDRELVPTLRGE 199 Query: 195 SSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMP-IESRL 253 S ++ + +P S+P FS WLP GF S R T+ N +E R Sbjct: 200 SDVIRQRVQRVIPD--SLP---DDGFSSQVDWLPAGFERTFSQR----TVGNSGWLEQRT 250 Query: 254 YSDGLFSFSVNVNRA-TPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENI 312 YSDGL + S+ V + + ++ + + G T + R IT+VGE+P QT K IA+ I Sbjct: 251 YSDGLATVSIFVEQGESDDASSGLAKMGATTAWMTFRQGVSITVVGEVPNQTVKAIAKEI 310 Query: 313 KFGAA 317 ++ Sbjct: 311 SLASS 315 >UniRef50_Q7NWD0 Negative regulator for alginate biosynthesis MucB n=1 Tax=Chromobacterium violaceum RepID=Q7NWD0_CHRVO Length = 321 Score = 83.6 bits (205), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 80/304 (26%), Positives = 137/304 (45%), Gaps = 12/304 (3%) Query: 11 VTGSLLFSANASATPASG-ALLQQMNLASQSLNYELSFISINKQGVESLR-YRHARLDNR 68 + G L+F A +A LL+ + A + + +++ +E+ R R + DN Sbjct: 6 LIGVLMFGAACAAHAEDDMQLLRNVGNAGRQQPLDGTYLHQMNGTLETFRIVRQGQGDN- 64 Query: 69 PLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDF 128 + +DGP REVV++G E++ F P + P+L+ D ++ Y Sbjct: 65 VREKRTSLDGPTREVVRKGRELTCFAPDKRALMACKISAMRLFPALLPDDLDDITRSYAL 124 Query: 129 ISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRV--I 186 G R+A R C+ + + RD RY+ + ++ + LP++V L G+ +EQF + Sbjct: 125 KRTGHDRVAKRDCQWLDLQPRDAQRYTMRMCIEPATYLPLKVMTLSPRGDAVEQFTFTDV 184 Query: 187 AFNVNQDISSSMQTLAKA-NLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMD 245 +D + L++ L S E A T LPQGF + S +R LP Sbjct: 185 ELGGAKDKRAYASRLSQRFQLRSGASAGSEEAAASQSEVTGLPQGFRLLRSVQRVLPGQG 244 Query: 246 NMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRR----TVSTSVRDNAEITIVGELP 301 P+ + SDGL SV V P ++ + G ++TS + + ++T VG++ Sbjct: 245 GKPVRHMVLSDGLVMLSVFVEPPPPEHA-RLEKVGNLHGAINMATSYQGDMQLTAVGDM- 302 Query: 302 PQTA 305 PQTA Sbjct: 303 PQTA 306 >UniRef50_Q2Y876 Sigma E regulatory protein, MucB/RseB n=2 Tax=Nitrosomonadaceae RepID=Q2Y876_NITMU Length = 328 Score = 82.0 bits (201), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 70/293 (23%), Positives = 131/293 (44%), Gaps = 15/293 (5%) Query: 31 LQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEI 90 LQ++ A + NY +F+ ++ +E+ R H + + + +DGP RE+++ +E+ Sbjct: 37 LQKIAAAPRHYNYVGTFVYSSEGQIETSRIIHLVNEEGEQEKSMVLDGPPREIIRNNDEM 96 Query: 91 SYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARD 150 + P + ++ P+L+ L Y + R++D ++I + RD Sbjct: 97 RCYLPENKTVVTEKRWLRKVFPALLPQPLINLDHNYVVKKGKQERVSDYASQIIELEPRD 156 Query: 151 GTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSM------QTLAKA 204 RY +WMD + L ++ ++D+ G +EQF + +I S+ A+ Sbjct: 157 DKRYGQKLWMDPNTGLLLKAAVMDK-GRVVEQFVFTDLKIGGEIDKSLLKSQYSGQAAEW 215 Query: 205 NLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVN 264 L+S G K W P GF ++ +R L + + P+ SDGL + SV Sbjct: 216 RKTNLVSSTQGS-GKLGWQVKDPPPGFKKIVEMKRNL-SGKSRPVAHIALSDGLAAVSVF 273 Query: 265 V--NRATPSSTDQMLRTGRRTVSTSVR---DNAEITIVGELPPQTAKRIAENI 312 + + SS + L R ++ R DN +T +GE+PP T +I ++ Sbjct: 274 IEPSSGEASSPVEGLYHSRGAINIYTRTLGDN-RVTAIGEVPPATVMQIGNSV 325 >UniRef50_C1DQR7 Sigma factor algU negative regulatory protein MucB n=2 Tax=Azotobacter vinelandii RepID=C1DQR7_AZOVD Length = 317 Score = 81.3 bits (199), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 75/322 (23%), Positives = 146/322 (45%), Gaps = 18/322 (5%) Query: 5 WFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQG---VESLRYR 61 +F++ L+ GS+ S A+ + L ++ A Q +++ F+ + G ++ ++ Sbjct: 3 FFSLLLLVGSMAMSVQAAD---AQNWLSRLLKAEQRQSFQGVFV-YERNGSFSTHAIWHQ 58 Query: 62 HARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKR 121 + D +LL++DG EV++ + + + G+ P D ++ Sbjct: 59 AGQNDGESRERLLRLDGAPVEVMRVDGRLKCGSSAVADQLIEGEGPWPPRP----LDPQK 114 Query: 122 LSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLE 181 L+ +Y+ VG +R+A R V+ ++ RD RY + + +D E+ LP++ LL+ G+ LE Sbjct: 115 LAEWYEIRMVGESRVAGRSAVVLTILPRDQYRYGFELHLDRETSLPLKSLLLNEKGQLLE 174 Query: 182 QFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPL 241 + + + + ++ A P+ + + +W WLP GF+ S +P Sbjct: 175 RLQFTQLDTSTPLTKDKLEPGPA-CQPVEVLQTSTPKQGAWRSEWLPPGFTLRSMHTQPS 233 Query: 242 PTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVR-----DNAEITI 296 P + I +Y DGL FSV + + + TV S R + +T+ Sbjct: 234 P-VSGENITYLMYGDGLARFSVFIEPLHSALVEDARSQLGPTVVVSKRISTADGDMMVTV 292 Query: 297 VGELPPQTAKRIAENIKFGAAQ 318 +GE+P TA+RI +I+ Q Sbjct: 293 IGEVPLGTAERIVLSIRASEEQ 314 >UniRef50_C4ZKS3 Sigma E regulatory protein, MucB/RseB n=3 Tax=Rhodocyclaceae RepID=C4ZKS3_THASP Length = 322 Score = 80.5 bits (197), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 78/319 (24%), Positives = 138/319 (43%), Gaps = 13/319 (4%) Query: 5 WFAMSLVTGSLLFSANASATPASGAL--LQQMNLASQSLNYELSFISINKQGVESLRYRH 62 WF L +LL ASA + L L +++ A Q LNY +F+ + VE+ R H Sbjct: 3 WFPAMLGLCALLAQGPASAEHPTDPLSWLGRISTAGQRLNYVGTFVYQSGSHVETSRIAH 62 Query: 63 ARLDNRPLAQLLQ-MDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKR 121 R+D + L+ +DG RE+++RG E+ P ++ + P+ + Sbjct: 63 -RVDASGEYERLEVLDGSPREIIRRGAEVRCVLPDERTVIIDEAQGRRAFPARLPASPTG 121 Query: 122 LSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLE 181 L+ Y R+A + + + +D RY +++W D +S L ++ LD+ G +E Sbjct: 122 LAENYRVRKGELGRVAGLEAQALVLEPKDELRYGHVLWADVQSGLLLKSRTLDQHGAVIE 181 Query: 182 QFRVIAFNVNQDISSSM-----QTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSS 236 QF + ++ +S+ +T + V + +A W G++ S+ Sbjct: 182 QFSFSELRIGGEVENSLLESRFKTDEGWRMVNARGVSMSVEAA-GWVLEPAVPGYALTSA 240 Query: 237 SRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQM--LRTGRRTVSTSVRDNAEI 294 +RPL D ++SDGL + SV + S + L +G + D + Sbjct: 241 MKRPL-GRDRGEAVHMVFSDGLAAISVFIEPIGEGSRAGLGPLSSGAINIFKRAIDGHLV 299 Query: 295 TIVGELPPQTAKRIAENIK 313 T +GE P +RI E I+ Sbjct: 300 TALGEAPEAAVRRIGEGIR 318 >UniRef50_Q0K8M7 Negative regulator of sigma24 activity n=10 Tax=Burkholderiaceae RepID=Q0K8M7_RALEH Length = 359 Score = 79.3 bits (194), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 78/307 (25%), Positives = 135/307 (43%), Gaps = 25/307 (8%) Query: 29 ALLQQMNLASQSLNYELSFISINKQGVESLRYRH-ARLDNRPLAQLLQMDGPRREVVQRG 87 A L +++ A+Q NY + I + + R +H + L + +L +DG REV+++ Sbjct: 50 AWLNKIHKAAQRENYVGTLIYQRGSVMHASRIQHYSDLVHNEYERLETLDGKPREVLRQN 109 Query: 88 NEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVV 147 + + P + + D P+L+ T+ + YD + R+A CEV + Sbjct: 110 DVVHSLIPEAKLVVVEKQEAKDRFPALLATNKNDVLDLYDMRKMPAERVAGMECEVFALE 169 Query: 148 ARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQ--FRVIAFNV---NQDISSSMQTLA 202 D RY+ +W + S L MR + G+ LEQ F + V Q I +++ + Sbjct: 170 PHDAARYAVRLWAEKNSGLLMRAQTIGDGGKVLEQVAFSQVQIGVPSEKQHILGAIKNSS 229 Query: 203 KANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDN-MPIESR--------- 252 N + P A W+ +GF ++ RRPL + P +R Sbjct: 230 SWNRYEVTYQPTN-IADEGWSIAVPLKGFQKIREVRRPLGELRAPAPGNARGQVFEVLQV 288 Query: 253 LYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTS---VRDNAE--ITIVGELPPQTAKR 307 +YSDGL SV + P S ++ R G + + VR A+ IT+VGE+P T ++ Sbjct: 289 VYSDGLTGLSVFIE---PVSEQRVRREGVAALGATQVVVRRIADFWITVVGEVPASTVRQ 345 Query: 308 IAENIKF 314 A +++ Sbjct: 346 FATAVEY 352 >UniRef50_A2SDG7 Sigma E regulatory protein, MucB/RseB n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SDG7_METPP Length = 340 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 71/308 (23%), Positives = 124/308 (40%), Gaps = 28/308 (9%) Query: 31 LQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEI 90 L +++ A+ N++ +F+ V S R H ++ +DG R+V + + + Sbjct: 34 LARIHEAAGKRNFQGTFVVTAAGSVASSRIVHFCDGRNQFERIESLDGQHRQVYRHNDLV 93 Query: 91 SYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARD 150 P + + P L+ R+ P+YD S+G R+A V+ + +D Sbjct: 94 HSLWPHSRVAVVETRQAMGQFPLLLSAGADRIVPFYDVKSLGDGRVAGHEANVLLLQPKD 153 Query: 151 GTRYSYIVWMDTESKLPMRVDLLDRDGETLE--QFRVIAFNVNQDISSSMQTLA-----K 203 G R+ Y +W + S L +R ++ D LE F ++ V S +Q + + Sbjct: 154 GYRFGYRLWAERSSGLLLRSEVFDERDVVLETSAFSEVSIGVKPRPESVLQAMKRLDGYR 213 Query: 204 ANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSR-----------RPLPTMDNMPIE-- 250 P L V +G + W LP GF VSS + RP + P+ Sbjct: 214 VERPTLQQVDIGREG---WLLNALPPGFRHVSSVKRLMTVAGGEQPRPAAAQEEFPLAPP 270 Query: 251 ---SRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAE--ITIVGELPPQTA 305 +YSDGL SV + P + + T V+ E IT++G++P T Sbjct: 271 SVLQVIYSDGLTYVSVFIEPYMPRLHRREMLMSLGATQTLVKRRGEWWITVIGDVPVVTL 330 Query: 306 KRIAENIK 313 + A ++ Sbjct: 331 RAFAAALE 338 >UniRef50_B6BUK0 Sigma E regulatory protein, MucB/RseB, putative n=1 Tax=beta proteobacterium KB13 RepID=B6BUK0_9PROT Length = 314 Score = 78.2 bits (191), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 64/289 (22%), Positives = 123/289 (42%), Gaps = 17/289 (5%) Query: 37 ASQSLNYE-LSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEP 95 AS LNY + + + Q ++S + H + ++ ++DG ++ + ++ Sbjct: 31 ASHDLNYSGIINTTDSNQDIQSTKMIHVNHEGEEFLKIEKIDGADNLLLMHEADAVIYDN 90 Query: 96 GLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYS 155 + P++ ++ +L Y G R+A R +++ + D RY+ Sbjct: 91 DQNKILIKKKKDAHLFPNIFPSNLDKLKDSYSIGDGGDFRVAGRATQMLVLSPVDENRYN 150 Query: 156 YIVWMDTESKLPMRVDLLDRDGETLEQ--FRVIAFNVNQDISSSMQTLAKANLPPLLSVP 213 Y +W+D +S LP+++ ++D + + +E F I F +QDIS + N+ ++ Sbjct: 151 YHLWLDKKSHLPLKMMVIDNNKKVVENIAFANIEFLKSQDIS-----WFRPNINNDIAYS 205 Query: 214 VGEKAKFS------WTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNR 267 + E WT LP GF EVS S + + N +YSDGL S+ ++ Sbjct: 206 INENKNIEETVRKFWTINDLPSGFEEVSYSAKRYAGL-NAIAHQIIYSDGLSYISIFIHP 264 Query: 268 ATPSSTDQM--LRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKF 314 + Q+ + G + + +I VG +P QT I +K Sbjct: 265 VAKNQKPQVGSSKRGSSNIHAEYKKGYQILAVGAVPMQTLSYITNKVKL 313 >UniRef50_C7HX17 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Thiomonas intermedia K12 RepID=C7HX17_THIIN Length = 359 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 78/296 (26%), Positives = 132/296 (44%), Gaps = 21/296 (7%) Query: 31 LQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEI 90 LQ ++ A++SLNY FI+ + + H L ++ +DG RR +V +E+ Sbjct: 67 LQTVSAAARSLNYSGVFITQRGDEISTSSLVHYVLPQGHFERIETLDGQRRIMVSLNDEV 126 Query: 91 SYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARD 150 P ++ S P L+ T + Y G R A C V ++ RD Sbjct: 127 RTSWPDYRLTLIDNQAGQASFPRLLKTTDGEVDRNYRLERGGLQRCAGFECRVSTLLPRD 186 Query: 151 GTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANL--PP 208 R+ Y +W +S+L ++ LD G + Q +N + Q+L + +L PP Sbjct: 187 DLRWGYRLWSLRDSQLLVKAQTLDAAGHVINQVAFTELKIN---VAPRQSLVRDSLHQPP 243 Query: 209 ------LLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIE--SRLYSDGLFS 260 + VPV +++ W + GF V RR + ++ + P E L SDGL S Sbjct: 244 GYAVEQMKVVPVSLQSQ-GWALSSQVPGFKTVGVFRRSM-SVGSKPSEVLQWLLSDGLAS 301 Query: 261 FSVNVNRAT----PSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENI 312 S+ V A P + +Q + G +S + D+ +T++G +P +T +RI+E I Sbjct: 302 VSIFVQSAADLSEPVAPEQRV-GGTLALSRRIGDSW-LTVMGAVPERTLRRISEAI 355 >UniRef50_C5BRN0 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BRN0_TERTT Length = 328 Score = 72.4 bits (176), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 61/233 (26%), Positives = 104/233 (44%), Gaps = 27/233 (11%) Query: 55 VESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSL 114 +E+++ H LD ++GP R+ + G +S G + + G + S Sbjct: 61 LETMQATHLVLDGVEFESYSHLNGPERQHARMGRLVSCQTLGGQLLS-GGKFAAGSA--- 116 Query: 115 IYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLD 174 R +Y F G R+A R V++++ +D RY + +D ES + ++ L+ Sbjct: 117 ----IARFHDHYQFYVKGYDRVAGRKVVVMQILPKDNFRYGISLGVDVESGVLLKY-LVM 171 Query: 175 RDGETLEQFRVIAFNVN--------QDISSSMQTLAKANLP-PLLSVPVGEKAKFSWTPT 225 + LE+ + +AF +N I+++ L P P VP +A W P+ Sbjct: 172 QPNRALERIQFVAFELNPTFSPDEIASITANANGLQPCAEPEPQAQVP---EALSEWMPS 228 Query: 226 WLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLR 278 W P GF VSS R T + + + Y+DGL S+SV +N +S D+ R Sbjct: 229 WAPPGFVHVSSKR----TEQDGIVHT--YTDGLASYSVFINSEVVASDDESAR 275 >UniRef50_C5CSF0 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Variovorax paradoxus S110 RepID=C5CSF0_VARPS Length = 356 Score = 72.0 bits (175), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 77/305 (25%), Positives = 136/305 (44%), Gaps = 32/305 (10%) Query: 31 LQQMNLASQSLNYELSFISINKQG-VESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNE 89 LQ+M+ ++ NY +F+ G + S R H R + + ++ + GP R +R + Sbjct: 57 LQRMHTGARQRNYIGTFVVSAAGGDLSSARIWHVRDGDLQIERIEALSGPPRSTFRRNHH 116 Query: 90 ISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVAR 149 + F P + + +D P+L + +YD +VG+ R+A +V+++V Sbjct: 117 VMTFLPEAKVVKVEKRENLDLFPNLPDKPDSSIGDFYDVRAVGKDRVAGFDADVVQLVPH 176 Query: 150 DGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPL 209 DG R+ Y +W + S L +++ +D + +EQ ++ I + Q LA+ + Sbjct: 177 DGLRFGYRIWSERRSGLVVKLQTVDAESRVVEQSAFSELQLDAPIKA--QALAQ-----M 229 Query: 210 LSVPVG---EKAKFSWTPT----WLPQ----GFSEVSSSRRPLPTMDNMPIESR----LY 254 +S G EK + T W+ + GF S RRP + D+ + R + Sbjct: 230 MSNTSGYRVEKLELERTSAQDEGWVLKAPVAGFKPRSFYRRPAGS-DSKAGQDRTVQWTF 288 Query: 255 SDGLFSFSVNVNRATPSST--DQMLRTG-----RRTVSTSVRDNAEITIVGELPPQTAKR 307 SDGL S S+ + R D +L G RR + D +T VGE+P QT Sbjct: 289 SDGLASVSLFIERYDEKRAPRDGVLTIGATNAIRRRLPEPASD-WWLTAVGEVPQQTLNA 347 Query: 308 IAENI 312 A+++ Sbjct: 348 FAQSL 352 >UniRef50_B8KFV0 Putative negative regulator for alginate biosynthesis n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KFV0_9GAMM Length = 322 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 82/328 (25%), Positives = 134/328 (40%), Gaps = 47/328 (14%) Query: 9 SLVTGSLLFSANA---------SATPASGALLQQMNLASQSLNYELSFISINKQGVESLR 59 SL+ G L+ A A S PA LLQ M+ +Q +Y ++ + Sbjct: 19 SLLAGFLVLLAPATLVAQPQCESLDPAVAQLLQAMSNNAQQASYSGVVTLQRGSDMQIME 78 Query: 60 YRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPF----TLNGDYIVDSLPSLI 115 H+ + + +L+++ G V + G+ PG + LNG Sbjct: 79 LSHSVSNGQASEELVRLTGQDARVERSGHPTGCMHPGHQLLRAANVLNGS---------- 128 Query: 116 YTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDR 175 F L+ Y F RIADR +RV RD R+ +++ +D ++ L ++ Sbjct: 129 ---FCGLASVYKFRVQPGDRIADRESVRLRVEPRDMYRFGHVLELDQDTALILKSSTFAA 185 Query: 176 DGETLEQFRVIAFNVNQDISSSMQTLAKANLP-PLLSVPVGEKAKFSWTPTWLPQGFSEV 234 D LEQF+ + ++ + +A+ P P S + + SW WLP GF Sbjct: 186 DQRVLEQFQFASLSMRPGEPNDAVIAHEASHPHPHESAHL--RTGVSWELAWLPDGFM-- 241 Query: 235 SSSRRPLPTMDNMPIES--RLYSDGLFSFSVNVN--RATPSSTDQMLRTGRRTVSTS--- 287 D P ES + Y+DGL SFSV + A + + R G T Sbjct: 242 --------ATDAAPPESQRKSYTDGLASFSVFLEPLSAAIKPGEGVERQGSTVAYTRGVL 293 Query: 288 -VRDNAEITIVGELPPQTAKRIAENIKF 314 R IT++GE+P TA+ +A++++ Sbjct: 294 LQRRPVLITVLGEIPTNTARMLADSVRL 321 >UniRef50_B7RX56 MucB/RseB family protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RX56_9GAMM Length = 319 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 66/299 (22%), Positives = 126/299 (42%), Gaps = 37/299 (12%) Query: 31 LQQMNLASQSLNYE-LSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNE 89 L +M+ + +NY + ++ ++ ++ H+ D + Q+ G +VV+ + Sbjct: 41 LDKMSRSVHQVNYHGVVTFQRGEEDMQVMQVSHSVTDGTTTESMTQLTGQGAKVVRAEHP 100 Query: 90 ISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVAR 149 + PG + + D I ++ +Y F R+A R I V Sbjct: 101 LECIHPGHKLLRIGDD---------INAGECGVAEHYRFSVTDGERVAGRKAVRIIVAPG 151 Query: 150 DGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRV--IAFNVNQDISSSMQTLAKANLP 207 D RY Y++ +D + L ++ + R + LE+F+ +++ + + +A P Sbjct: 152 DMYRYGYVMELDRRTGLLLKTATMGRGDKVLEKFQFADLSYKGKDPEGADANLVHEAQHP 211 Query: 208 -PLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVN 266 P + P A + W WLP GF S +R + Y+DGL FSV + Sbjct: 212 VPGHNAPQVSAAGYGWDVKWLPSGFMATDSQQRNAG--------RKTYTDGLAVFSVFIE 263 Query: 267 RATPSSTDQMLRTGR---RTVSTSVRDNAE--------ITIVGELPPQTAKRIAENIKF 314 + D+ +R G R+ ST+ +T+VGE+P TA+ +A+++K+ Sbjct: 264 -----ALDREIRPGEGVVRSGSTTSYSRGMALSGEPVLVTVVGEVPVNTARMVADSVKW 317 >UniRef50_Q126J7 Putative sigma E regulatory protein, MucB/RseB n=3 Tax=Comamonadaceae RepID=Q126J7_POLSJ Length = 352 Score = 71.6 bits (174), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 66/293 (22%), Positives = 130/293 (44%), Gaps = 13/293 (4%) Query: 31 LQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEI 90 L +M+ AS+ +Y +F+ + + S + H N+ + ++ + G R + + +++ Sbjct: 60 LMRMHEASKKRSYIGTFVVSSGGAMSSAKVWHVCEGNQQVERVETLTGAPRSIFRHNDQV 119 Query: 91 SYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARD 150 F P + + P L+ + R++ +Y G R+A +V+ +V +D Sbjct: 120 VTFMPDHKVVRSEKRESLGMFPELLQSTDSRIADFYKMRHDGVERVAGVEADVVMLVPKD 179 Query: 151 GTRYSYIVWMDTESKLPMRVDLLDRDGETLEQ--FRVIAFNVNQDISSSMQTLAKANLPP 208 R+ Y +W + + L +++ LD DG+ LEQ F + + + +Q + K + Sbjct: 180 SMRFGYRIWTEQKKGLVVKLQTLDADGKVLEQAAFSELQLDAPVKMDQLIQMMGKVD-GY 238 Query: 209 LLSVPVGEKAKFS---WTPTWLPQGFSEVSSSRRPLPTM--DNMPIESRLYSDGLFSFSV 263 + PV K S W GF +S +RP P++ ++SDGL S S+ Sbjct: 239 RVEKPVMVKTTASAEGWVLKAPVAGFKPMSCYKRPAANAAPGAEPLQW-IFSDGLASVSI 297 Query: 264 NV---NRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIK 313 V +R + +T++ V D +TI+GE+P T + A ++ Sbjct: 298 FVEPYDRQRHEKESSLSLGATQTLTRQV-DAYWVTIMGEVPMATLRHFANGLE 349 >UniRef50_UPI0000E87AE1 Putative Sigma E regulatory protein, MucB/RseB n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87AE1 Length = 317 Score = 71.2 bits (173), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 69/296 (23%), Positives = 130/296 (43%), Gaps = 17/296 (5%) Query: 30 LLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNE 89 +L + + AS+ LNY+ +F N + ++S+ HA ++ MDG E++ G Sbjct: 28 ILTEAHQASKMLNYQGTFHLKNSKVIQSMEITHAIHGEDEYTRMTLMDGDPGEMLSHGKN 87 Query: 90 ISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRT-RIADRLCEVIRVVA 148 I ++ + PS++ + + L Y +S G R+ADR +++ ++ Sbjct: 88 IFVYDSKENNVVIQKREQHHLFPSVLPSTPENLKKVYT-LSFGEVVRVADRPAQMLTLIP 146 Query: 149 RDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQ-----FRVIAFNVNQDISSSMQTLAK 203 +D R+ + W+D ++ LP+++ + + E +EQ +++ + L+K Sbjct: 147 KDNFRHQFHFWIDQDTALPLKMIVSNEANEIIEQASFTKLKIVDMKTDLSWFKPKIDLSK 206 Query: 204 ANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSV 263 + V KF WT P+GFSE+SSS + N+ +YSDGL SV Sbjct: 207 EYVMHEEEPVVLPGLKF-WTFVNKPKGFSEISSSATRNKDL-NVLSHHLIYSDGLSYISV 264 Query: 264 NVNRATPSSTDQMLRTGR-----RTVSTSVRDNAEITIVGELPPQTAKRIAENIKF 314 + P T M + G +S ++ VG +P + + ++I F Sbjct: 265 FIQ---PVQTGLMPKVGTISMEGTNISARYYRGYQVMAVGTVPMKALESFTKSISF 317 >UniRef50_B9Z3B1 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z3B1_9NEIS Length = 319 Score = 70.5 bits (171), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 57/250 (22%), Positives = 114/250 (45%), Gaps = 18/250 (7%) Query: 76 MDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTR 135 +DG RE+V+ G+E++ + P + + P+L+ D ++ Y + R Sbjct: 72 LDGTPREIVRNGSELTGYGPDKKALMAAKVSAMRLFPALLPDDMAGVAESYTLKRLAGDR 131 Query: 136 IADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDIS 195 +A R C+ + + A+D RY + +D S LP+++ L E +EQ+ ++ + Sbjct: 132 VAQRECDWLELKAKDRARYGLRLCLDRASLLPLKIMTLSPAQEPVEQYMFTELDLA---A 188 Query: 196 SSMQTLAKANLPPLLSVPVGEKAKFSWTP----------TWLPQGFSEVSSSRRPLPTMD 245 + K + P LS+P+ A S P + LP GF + + +R LP Sbjct: 189 PKDRNQFKPHYP--LSLPI-RNASTSVPPSGAGMEGVEVSGLPSGFRLIRALQRSLPGQA 245 Query: 246 NMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRT--GRRTVSTSVRDNAEITIVGELPPQ 303 + +Y+DGL S+ + A + + T G +++ + ++T+VG+LP Sbjct: 246 EHAVRHLVYTDGLVMLSLFIEPAGAEPRVERVSTLYGVVAMASGSQGGMQLTLVGDLPEA 305 Query: 304 TAKRIAENIK 313 + + ++I+ Sbjct: 306 SMMSLLKSIR 315 >UniRef50_Q21IH0 Negative regulator of sigma E activity-like protein n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21IH0_SACD2 Length = 361 Score = 69.7 bits (169), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 85/371 (22%), Positives = 159/371 (42%), Gaps = 76/371 (20%) Query: 3 QLWFAMSLVTGSLLFSANASA---TPASGALLQQMNLASQSLNYELSFISINKQGVESLR 59 ++ ++++V + S SA T + +L Q+ +++S NY F + ++ LR Sbjct: 2 KIALSLAIVLAVVGVSPAVSALDKTSSVAEILNQLGNSTKSQNYRGEFTYEHDGTIDMLR 61 Query: 60 YRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDF 119 HA +D ++ ++GP + ++ G I G L G + S ++ D Sbjct: 62 VVHAVIDGVEYERIYHLNGPEKSFMREGQSIDCVTAG--NHLLRGRRLTLSSGRMVSIDQ 119 Query: 120 KRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGET 179 Y F G RIA R +++++ +D RY ++ +D ++ L + + + + Sbjct: 120 N-----YQFHMRGEERIAGREALILQLLPKDPYRYGMVLGVDKQTGLLTKAVITEGQKKV 174 Query: 180 LEQFRVIAFNVNQD--ISSSMQTLA--KANLPPLL----------------SVPVGEK-- 217 E+ + ++ +++ D I + LA K++L PL+ VP + Sbjct: 175 WERIQFVSLSLDDDMGIEAIYPDLATGKSSLAPLVESSMVDGSVVDGSVTTEVPASPEGS 234 Query: 218 ----------------------------AKFSWTPTWLPQGF--SEVSSSRRPLPTMDNM 247 +K P W+P GF S+ S S ++ Sbjct: 235 MIDNSSEASASAEPPANDADQDCRQPAASKAPLQPAWVPNGFVLSDYSYSD------EDG 288 Query: 248 PIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVS--TSV-RDN--AEITIVGELPP 302 +E+ Y+DGL FS+ + R T + ++R G TVS TSV DN IT+VGE+P Sbjct: 289 HMET--YTDGLSVFSIFIGRVTDKPSQAVVRNG-ATVSLLTSVPSDNQFVTITVVGEVPA 345 Query: 303 QTAKRIAENIK 313 TA R+ ++++ Sbjct: 346 VTAHRVTQSLR 356 >UniRef50_A1WMW7 Sigma E regulatory protein, MucB/RseB n=5 Tax=Comamonadaceae RepID=A1WMW7_VEREI Length = 357 Score = 69.3 bits (168), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 72/296 (24%), Positives = 128/296 (43%), Gaps = 16/296 (5%) Query: 31 LQQMNLASQSLNYELSFISINKQG-VESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNE 89 L++M A +Y +F+ ++ G + S R HA R + ++ + G R V +R +E Sbjct: 62 LERMRSAPCHRSYAGTFVVLSANGAMSSARIWHACDGQRQMERVESLSGTPRTVFRRDDE 121 Query: 90 ISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVAR 149 + F P + V P + + +Y +G+ R+A + +V+ Sbjct: 122 VRTFLPQQRIVRADRRDAVGLFPPVPPVSGTSVGQFYVSRLMGQERVAGFVADVVWFKPV 181 Query: 150 DGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVN-----QDISSSMQTLAKA 204 D R+ Y +W + ++ L +++ L DG LEQ ++N ++ M A Sbjct: 182 DTLRFGYRLWSERDTGLAVKLQTLAPDGRVLEQAAFSELDLNAPVQVDQLARLMDATAGY 241 Query: 205 NL--PPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMP-IESRLYSDGLFSF 261 L PP++ E+ WT GF VS RR + D+ P + LYSDGL S Sbjct: 242 KLIAPPVVKTTAKEEG---WTLRQPVAGFVPVSCHRRAVSMADDAPSVLQCLYSDGLASV 298 Query: 262 SVNVNRATPS---STDQMLRTGR-RTVSTSVRDNAEITIVGELPPQTAKRIAENIK 313 S+ + P + Q+ G + ++ V + +T VGE+P T + A ++ Sbjct: 299 SLFLEPFDPQHHPARPQISGMGATQLLAQRVAPDMWVTAVGEVPLSTLRLFAGQLE 354 >UniRef50_B9ZJG1 Sigma E regulatory protein, MucB/RseB n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJG1_9GAMM Length = 327 Score = 68.2 bits (165), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 81/331 (24%), Positives = 143/331 (43%), Gaps = 23/331 (6%) Query: 4 LWFAMSLVTGS--LLFSANASATPAS-GALLQQMNLASQSLNYELSFISINKQGVESLRY 60 +W + LV + L A A AS L++M + + +Y+ +F+ ++++R Sbjct: 1 MWRGLPLVLAATALCLPAQVLADEASPSEWLERMTTSLHAESYQGTFVLQRDDRIDTIRV 60 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSL-PSLIYTDF 119 H D +L + G RE+++ + +S + +GD L P+ Sbjct: 61 VHVAEDGGYRERLETLTGAEREILRSVDRLSAIKGA---RGASGDGAQSPLGPAGAPVSL 117 Query: 120 KRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGET 179 + Y G R+A C +I ARD RYS+ + +S LP+ +L D G+ Sbjct: 118 LQEHDLYSLDIQGLDRVAGYPCTLILARARDALRYSHRYCLHMDSALPLLSELYDPKGKL 177 Query: 180 LEQFRVIAFNVNQDISSS--MQTLAKANLPPLLSVPVGEKAKF-------SWTPTWLPQG 230 LE+ ++ +I+ S T +A + + +K ++ W LP G Sbjct: 178 LERLAFTDLELSGEIAESELEPTTDQAEHIEVRADRGHKKPQWDDDNGLGGWKFGELPPG 237 Query: 231 FSEVSSSRRPLPTMDNMPIESRLY--SDGLFSFSVNVNRA-TPSSTDQMLRTGRRTVSTS 287 F V+++ R L D + SR + SDGL S SV V A S + R G + Sbjct: 238 FQAVAATERSLGNGDEI---SRHFVLSDGLASVSVYVEPADGEKSFEGTTRAGATHAAAR 294 Query: 288 VRDNAEITIVGELPPQTAKRIAENIKF-GAA 317 V ++T VG++P T +++ + + + GAA Sbjct: 295 VMAGHQVTAVGDVPHVTVQQVLDAVYYQGAA 325 >UniRef50_Q2KW13 Sigma-E factor regulatory protein n=5 Tax=Bordetella RepID=Q2KW13_BORA1 Length = 341 Score = 62.8 bits (151), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 69/311 (22%), Positives = 130/311 (41%), Gaps = 27/311 (8%) Query: 19 ANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDG 78 A ++ P LL + A+++ +Y F+ ++S R H +L +DG Sbjct: 36 AQSAPLPDPVQLLADIQQAARTQDYAGVFMYQQGDTMQSSRLVHIVDGTGERERLEILDG 95 Query: 79 PRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGR-TRIA 137 RE ++ + P E L D P L+ D K L+ +Y + + R+A Sbjct: 96 QPREYLRHNENVQCLIPEHETVLLERRR-GDRFPGLLLGDPKDLTKHYVIRAESKLHRVA 154 Query: 138 DRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDI-SS 196 DR C I + RD RY Y + D ++ L ++ +D +EQ + V D+ + Sbjct: 155 DRQCRPISIEPRDALRYGYRLCADVDTNLLLKAQTVDGKRGVVEQVSFSSLRVGSDVDAG 214 Query: 197 SMQT--------LAKANLPPLLSVPVGEKAKFSW-TPTWLPQGFSEVSSSRRPLPTMDNM 247 S+ + + + ++ P+ + A W P P+GFS V R M Sbjct: 215 SLNSRWNTRDWRIVEPDMKPV------DLAALGWRIPA--PEGFSPVMQVTR---QMGKG 263 Query: 248 PIESRLYSDGLFSFSVNVNRATPSSTDQ----MLRTGRRTVSTSVRDNAEITIVGELPPQ 303 + + SDGL + SV + + +++ G + + + +T++GE+P Sbjct: 264 TVSQVVLSDGLAAISVFIEPYDGTRHHHPPAGLVQRGSINIYGTRIADYWMTVLGEVPAA 323 Query: 304 TAKRIAENIKF 314 T + +A+N ++ Sbjct: 324 TLETLAQNTEY 334 >UniRef50_A4A3V1 MucB/RseB family protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4A3V1_9GAMM Length = 298 Score = 61.6 bits (148), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 72/300 (24%), Positives = 127/300 (42%), Gaps = 30/300 (10%) Query: 24 TPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREV 83 P+ LLQ M+ +Q NY ++ + H + + +L ++ G V Sbjct: 19 APSVARLLQAMSSNAQRGNYSGVVTLQRGNDMQIMELSHRVENGQASEELSRLTGQDALV 78 Query: 84 VQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEV 143 + + PG + L I+D F L+ Y F RIA R Sbjct: 79 ERTDHPTDCMHPGHQ--LLRSAEIIDG-------SFCGLASVYRFRVQPGDRIAGRASLR 129 Query: 144 IRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAK 203 +RV +D R+ +++ +D ++ L ++ D LEQF+ + ++ + + Sbjct: 130 LRVEPKDMYRFGHVLELDQDTALILKSSTFAADQSVLEQFQFASISMAPRQPADAVVEYE 189 Query: 204 ANLP-PLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIES--RLYSDGLFS 260 A P P S + + +W WLP+GF +PT D++P ES + Y+DGL S Sbjct: 190 ATHPHPHESEHL--RRGVAWDLAWLPEGF---------MPT-DSVPKESQRKSYTDGLAS 237 Query: 261 FSVNVN--RATPSSTDQMLRTGRRTVSTSV----RDNAEITIVGELPPQTAKRIAENIKF 314 FSV + A + + R G T R +T++GE+P TA+ +A++++ Sbjct: 238 FSVFLEPLGAAIKPGEGVERQGSTVAYTRGTLLDRRPVLVTVLGEIPTNTARMLADSVRL 297 >UniRef50_A6GP47 Sigma E regulatory protein, MucB/RseB n=1 Tax=Limnobacter sp. MED105 RepID=A6GP47_9BURK Length = 326 Score = 59.3 bits (142), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 72/332 (21%), Positives = 136/332 (40%), Gaps = 40/332 (12%) Query: 6 FAMSLVTGSLLFSAN--ASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHA 63 FA + TG LL S A A + +L+ + ++SL+Y I+ + + ++ + H Sbjct: 9 FAKHVATGVLLASVAFAAHADQSLWSLVWASHDQAKSLSYSGLLITESGKHSQTSKLLHQ 68 Query: 64 RLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIY--TDFKR 121 L ++DG + ++ ++I P + + + P ++ Sbjct: 69 ATAGGEFEVLERLDGQPAKWIRHNDQIQCVIPDRKMILTERRHTSIAFPRVLAGADGSNS 128 Query: 122 LSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLE 181 L Y + R+A R V+++ +D RY Y +++D E+KL MR +L GE LE Sbjct: 129 LEKLYTISEMPGRRVAGRAVRVLKLTPKDDLRYEYRLYVDRENKLLMRSELYSPQGEVLE 188 Query: 182 Q--FRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSW----------TPTWLPQ 229 F+ I+F P L+ P KA W TP+ L Sbjct: 189 NVGFKEISFE-----------------PALIENPSLAKAGPGWRTSSTEVRTLTPSELTY 231 Query: 230 GFSEVSSSRRPLPTMDNMP-----IESRLYSDGLFSFSVNVNR--ATPSSTDQMLRTGRR 282 +++ + T+ + I +YSDGL + SV V + A+ S + G Sbjct: 232 DLPDIAFGFKKADTVCRVKSKDDQIHQTVYSDGLSTLSVFVQKIQASHSMPQVPMSHGAV 291 Query: 283 TVSTSVRDNAEITIVGELPPQTAKRIAENIKF 314 + + +T++GE+P +T +++++ Sbjct: 292 MSKSETQGQHLVTVLGEVPEKTLGLFLKSVRW 323 >UniRef50_B8KRG2 Negative regulator for alginate biosynthesis n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KRG2_9GAMM Length = 265 Score = 57.8 bits (138), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 54/205 (26%), Positives = 96/205 (46%), Gaps = 42/205 (20%) Query: 122 LSPYYDFISVGRTRIADRLCEVIRVVAR--DGTRYSYIVWMDTESKLPMRVDLLDRDGET 179 L+ +Y F S + R E +R+ AR D R+ Y++ +D + LP+RV DG+ Sbjct: 86 LAEHYVFASAPGDTVGGR--ETLRLSARPRDPLRFGYVMDLDKQFGLPLRVVTATADGQM 143 Query: 180 LEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRR 239 LE++ + ++ SS ++ LP + S + + LP GF ++S + Sbjct: 144 LERYEFASIEISATPDSS-----QSRLPQIDS---------DFALSELPPGFKLIASRTQ 189 Query: 240 PLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGR------RTVS-----TSV 288 P+P M + SDGL + +V + S +Q+++ G TVS Sbjct: 190 PMPAM--------IVSDGLAAATVFIE-----SVEQIIQPGEGGLNEGSTVSYTRGVNGP 236 Query: 289 RDNAEITIVGELPPQTAKRIAENIK 313 R +T+VGE+P TA+ +A+ ++ Sbjct: 237 RGGILVTVVGEIPMVTARLLADAVR 261 >UniRef50_A1TLE5 Putative sigma E regulatory protein, MucB/RseB n=2 Tax=Acidovorax RepID=A1TLE5_ACIAC Length = 352 Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 66/295 (22%), Positives = 130/295 (44%), Gaps = 12/295 (4%) Query: 31 LQQMNLASQSLNYELSFISINKQG-VESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNE 89 +++++ AS+ +Y SF+ + G + S R HA + ++ +DG R V ++ + Sbjct: 55 VERIHRASREQSYRGSFVVWSSAGGMTSSRIWHATDGKVQIERIEALDGSPRTVFRKDDL 114 Query: 90 ISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVAR 149 + F P + P L + + +Y +G R+A + ++ + R Sbjct: 115 VRTFLPKARVVKEERRDMPGLFPHLPQAESSAVLRHYRARFLGSDRVAGQDASILWLEPR 174 Query: 150 DGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQ--FRVIAFNVNQDISSSMQTLAKANLP 207 DG R+ Y +WM S L +++ L G+ LEQ F I F+ + + Sbjct: 175 DGLRFGYRIWMARPSGLVVKLQTLGLRGQVLEQAAFSQIDFDTPPTVPQLAAQMDDTRGF 234 Query: 208 PLLSVPVGEKA--KFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIE--SRLYSDGLFSFSV 263 LL+VP+ + + W + GF +R + MP+ ++SDGL + S+ Sbjct: 235 RLLAVPLVKTTAREAGWQLSRPVAGFVPGDCYKRDPAVLARMPMPPLQCIFSDGLATVSL 294 Query: 264 ---NVNRATPSSTDQMLRTG-RRTVSTSVRDNA-EITIVGELPPQTAKRIAENIK 313 + A + + + G +T++ V + +T VGE+P +T +++ E I+ Sbjct: 295 FFEPYDAARHAGEPRRMDMGATQTLAQRVAGGSIWLTAVGEVPQETLRQLVEQIE 349 >UniRef50_B1XZN2 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XZN2_LEPCP Length = 387 Score = 51.6 bits (122), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 33/157 (21%), Positives = 71/157 (45%) Query: 25 PASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVV 84 P +++++ A+ ++ +F+ + SLR H + + ++ +DG R+V Sbjct: 61 PDPATVIRRIQDAANRHSFSGTFVVSAGGAMTSLRITHVSDGHNQIERVETLDGQMRQVY 120 Query: 85 QRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVI 144 + + + P + + P+++ T Y+ S G R+A EV+ Sbjct: 121 RHNDLVHVLWPRSHAAIIEHRDLGLGYPAVLQTGSAARLDMYELKSAGIDRVAGLEAEVL 180 Query: 145 RVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLE 181 ++ RD RY +W++ ++ L +R D+L GE +E Sbjct: 181 QLRPRDAHRYGQRLWLERQTGLLLRTDILGPQGELIE 217 >UniRef50_A0Z442 Sigma factor algU regulatory protein AlgN n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z442_9GAMM Length = 290 Score = 50.4 bits (119), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 51/199 (25%), Positives = 87/199 (43%), Gaps = 28/199 (14%) Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 L+ YY +A R + RD R +Y++ +D E +P+RV +G+ L Sbjct: 108 HLARYYGLAIEPGPAVAGRATYRLSARPRDTLRLAYVMDLDAEFYVPLRVLAASPEGQIL 167 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRP 240 E++ DI + + + + GE + LP GF+ V+ R Sbjct: 168 ERYEF------ADIIFEAKVVPTDD-----GIRDGELVASKYYLAALPPGFTVVNQGR-- 214 Query: 241 LPTMDNMPIESRLYSDGLFSFSV---NVNRATPSSTDQMLRTGRRTVSTSVRDNAE---I 294 +P++ + SDGL + SV N + PS LR T + R NA+ + Sbjct: 215 ------LPVDFLVLSDGLATVSVFVENQPNSLPSGEGFALRGSSLTYT---RGNAQRQLV 265 Query: 295 TIVGELPPQTAKRIAENIK 313 T++GE+P TA+ +AE ++ Sbjct: 266 TVLGEVPITTARLLAEALR 284 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AFY0 Sigma-E factor regulatory protein rseB n=161 Tax... 422 e-117 UniRef50_Q7N1X1 Sigma-E factor regulatory protein RseB n=8 Tax=E... 352 8e-96 UniRef50_Q7MHN3 Negative regulator of sigma E activity n=68 Tax=... 342 1e-92 UniRef50_A6SXQ7 Sigma-E factor negative regulatory protein RseB ... 340 5e-92 UniRef50_Q65QC3 RseB protein n=2 Tax=Pasteurellaceae RepID=Q65QC... 325 1e-87 UniRef50_C0N4S1 MucB/RseB family n=1 Tax=Methylophaga thiooxidan... 324 3e-87 UniRef50_C6X6N7 Sigma E regulatory protein, MucB/RseB n=2 Tax=Me... 323 4e-87 UniRef50_Q3IDL6 Putative anti sigma E (Sigma 24) factor, negativ... 323 5e-87 UniRef50_A6VKY3 Sigma E regulatory protein, MucB/RseB n=1 Tax=Ac... 323 5e-87 UniRef50_C4K3Z0 Anti sigma E (Sigma 24) factor, negative regulat... 322 9e-87 UniRef50_B4F051 Anti sigma E (Sigma 24) factor, negative regulat... 320 4e-86 UniRef50_P44792 Sigma-E factor regulatory protein rseB homolog n... 318 1e-85 UniRef50_Q3J8C9 Sigma E regulatory protein, MucB/RseB n=2 Tax=Ni... 317 4e-85 UniRef50_C4ZKS3 Sigma E regulatory protein, MucB/RseB n=3 Tax=Rh... 316 5e-85 UniRef50_C5V4B6 Sigma E regulatory protein, MucB/RseB n=1 Tax=Ga... 315 2e-84 UniRef50_Q2SXT9 Sigma factor algU regulatory protein MucB n=56 T... 314 3e-84 UniRef50_B5JX06 MucB/RseB n=1 Tax=gamma proteobacterium HTCC5015... 314 3e-84 UniRef50_B8GPK4 Sigma E regulatory protein, MucB/RseB n=1 Tax=Th... 310 4e-83 UniRef50_B8F3K5 Periplasmic negative regulator of sigmaE n=2 Tax... 309 1e-82 UniRef50_Q47WP0 Sigma-E factor regulatory protein RseB n=1 Tax=C... 308 1e-82 UniRef50_Q1H2L7 Sigma E regulatory protein, MucB/RseB n=1 Tax=Me... 307 3e-82 UniRef50_A7JWL1 Sigma E regulator RseB n=3 Tax=Pasteurellaceae R... 307 4e-82 UniRef50_Q2SL38 Sigma factor algU negative regulatory protein Mu... 306 5e-82 UniRef50_A4BRZ0 MucB/RseB n=1 Tax=Nitrococcus mobilis Nb-231 Rep... 306 5e-82 UniRef50_Q2Y876 Sigma E regulatory protein, MucB/RseB n=2 Tax=Ni... 306 6e-82 UniRef50_C6P3S1 Sigma E regulatory protein, MucB/RseB n=1 Tax=Si... 302 1e-80 UniRef50_A1SR26 Sigma E regulatory protein, MucB/RseB n=2 Tax=Ps... 302 2e-80 UniRef50_Q15R29 Sigma E regulatory protein, MucB/RseB n=1 Tax=Ps... 301 2e-80 UniRef50_B4RVL6 Putative anti sigma E (Sigma 24) factor, negativ... 300 5e-80 UniRef50_UPI0001AEB8D1 putative anti sigma E (sigma 24) factor, ... 299 1e-79 UniRef50_C5S2D4 Periplasmic negative regulator of sigmaE n=2 Tax... 297 2e-79 UniRef50_A0KGE8 Sigma-E factor regulatory protein RseB n=2 Tax=A... 297 4e-79 UniRef50_Q126J7 Putative sigma E regulatory protein, MucB/RseB n... 291 2e-77 UniRef50_A6FDN5 Sigma-E factor regulatory protein RseB n=1 Tax=M... 289 6e-77 UniRef50_C5SBU2 Sigma E regulatory protein, MucB/RseB n=1 Tax=Al... 289 7e-77 UniRef50_Q07YZ2 Sigma E regulatory protein, MucB/RseB n=22 Tax=S... 286 6e-76 UniRef50_A3WPR5 Negative regulator of sigma E activity n=1 Tax=I... 286 6e-76 UniRef50_Q3SH43 Putative Sigma E regulatory protein, MucB/RseB n... 284 2e-75 UniRef50_Q5R102 Negative regulator of sigma E activity n=1 Tax=I... 284 2e-75 UniRef50_Q0A8Z7 Sigma E regulatory protein, MucB/RseB n=1 Tax=Al... 284 2e-75 UniRef50_C1DQR7 Sigma factor algU negative regulatory protein Mu... 283 5e-75 UniRef50_Q2KW13 Sigma-E factor regulatory protein n=5 Tax=Bordet... 282 8e-75 UniRef50_A1WT21 Sigma E regulatory protein, MucB/RseB n=1 Tax=Ha... 282 8e-75 UniRef50_Q0VP13 Negative regulator for alginate biosynthesis n=2... 282 1e-74 UniRef50_A3Y8F0 MucB/RseB n=1 Tax=Marinomonas sp. MED121 RepID=A... 280 4e-74 UniRef50_B9ZJG1 Sigma E regulatory protein, MucB/RseB n=1 Tax=Th... 279 1e-73 UniRef50_C4LBZ4 Sigma E regulatory protein, MucB/RseB n=1 Tax=To... 278 2e-73 UniRef50_Q608M1 Putative sigma-E factor regulatory protein n=1 T... 277 3e-73 UniRef50_A0YCK6 Sigma factor algU negative regulatory protein Mu... 276 6e-73 UniRef50_Q0K8M7 Negative regulator of sigma24 activity n=10 Tax=... 275 1e-72 UniRef50_UPI0000E11523 putative anti sigma E (sigma 24) factor, ... 275 2e-72 UniRef50_A6VUA2 Sigma E regulatory protein, MucB/RseB n=1 Tax=Ma... 275 2e-72 UniRef50_A1WMW7 Sigma E regulatory protein, MucB/RseB n=5 Tax=Co... 275 2e-72 UniRef50_P38108 Sigma factor algU regulatory protein mucB n=27 T... 274 3e-72 UniRef50_C5CSF0 Putative sigma E regulatory protein, MucB/RseB n... 273 6e-72 UniRef50_B3PJ99 Sigma factor algU regulatory protein MucB n=1 Ta... 272 2e-71 UniRef50_A1U2X0 Sigma E regulatory protein, MucB/RseB n=3 Tax=Ma... 270 3e-71 UniRef50_Q1N1C1 Sigma factor algU negative regulatory protein Mu... 265 1e-69 UniRef50_A2SDG7 Sigma E regulatory protein, MucB/RseB n=1 Tax=Me... 265 1e-69 UniRef50_UPI0000E87AE1 Putative Sigma E regulatory protein, MucB... 265 2e-69 UniRef50_A1TLE5 Putative sigma E regulatory protein, MucB/RseB n... 264 2e-69 UniRef50_Q6SFI4 MucB/RseB family protein n=1 Tax=uncultured mari... 262 8e-69 UniRef50_Q7NWD0 Negative regulator for alginate biosynthesis Muc... 262 1e-68 UniRef50_B7RX56 MucB/RseB family protein n=1 Tax=marine gamma pr... 261 3e-68 UniRef50_B8KFV0 Putative negative regulator for alginate biosynt... 259 8e-68 UniRef50_C7HX17 Putative sigma E regulatory protein, MucB/RseB n... 255 1e-66 UniRef50_Q1YS35 MucB/RseB n=1 Tax=gamma proteobacterium HTCC2207... 255 2e-66 UniRef50_A4A3V1 MucB/RseB family protein n=1 Tax=Congregibacter ... 253 7e-66 UniRef50_A6GP47 Sigma E regulatory protein, MucB/RseB n=1 Tax=Li... 252 1e-65 UniRef50_A4BBJ2 Sigma factor algU negative regulatory protein Mu... 252 1e-65 UniRef50_B9Z3B1 Putative sigma E regulatory protein, MucB/RseB n... 246 9e-64 UniRef50_B6BUK0 Sigma E regulatory protein, MucB/RseB, putative ... 245 1e-63 UniRef50_B1XZN2 Putative sigma E regulatory protein, MucB/RseB n... 242 2e-62 UniRef50_Q21IH0 Negative regulator of sigma E activity-like prot... 235 2e-60 UniRef50_Q0PQN8 MucB (Fragment) n=1 Tax=Endoriftia persephone 'H... 216 7e-55 UniRef50_C5BRN0 Putative sigma E regulatory protein, MucB/RseB n... 208 2e-52 UniRef50_B8KRG2 Negative regulator for alginate biosynthesis n=1... 170 5e-41 UniRef50_A0Z442 Sigma factor algU regulatory protein AlgN n=1 Ta... 161 3e-38 UniRef50_D0WVV8 Sigma-E factor regulatory protein rseB n=1 Tax=V... 130 7e-29 Sequences not found previously or not previously below threshold: UniRef50_D1A972 Putative sigma E regulatory protein, MucB/RseB n... 102 2e-20 UniRef50_D2PMC2 Putative sigma E regulatory protein, MucB/RseB n... 101 3e-20 UniRef50_Q47SM3 Putative uncharacterized protein n=1 Tax=Thermob... 80 1e-13 UniRef50_B5YDF2 Putative uncharacterized protein n=2 Tax=Dictyog... 75 5e-12 UniRef50_Q2BJ05 Putative sigma-E factor regulatory protein RseB ... 71 6e-11 UniRef50_D2B0P7 Putative sigma E regulatory protein, MucB/RseB n... 64 8e-09 UniRef50_C1YKW1 Putative uncharacterized protein n=1 Tax=Nocardi... 61 4e-08 UniRef50_O28957 Putative uncharacterized protein n=1 Tax=Archaeo... 61 7e-08 UniRef50_C1SKR3 Putative uncharacterized protein n=1 Tax=Denitro... 58 4e-07 UniRef50_B9PFG8 Predicted protein (Fragment) n=9 Tax=cellular or... 56 2e-06 UniRef50_UPI0001C421AC hypothetical protein BpOF4_12315 n=1 Tax=... 53 2e-05 UniRef50_C5SBY0 Putative uncharacterized protein n=1 Tax=Allochr... 52 3e-05 UniRef50_A4X5A9 Putative uncharacterized protein n=3 Tax=Micromo... 52 3e-05 UniRef50_B8FZS6 Putative uncharacterized protein n=2 Tax=Desulfi... 51 5e-05 UniRef50_UPI0001B543E2 hypothetical protein SSPB78_20494 n=1 Tax... 51 5e-05 UniRef50_C8S7Q8 Putative uncharacterized protein n=1 Tax=Ferrogl... 51 6e-05 UniRef50_Q12Z81 Putative uncharacterized protein n=1 Tax=Methano... 51 7e-05 UniRef50_Q6AMB5 Putative uncharacterized protein n=1 Tax=Desulfo... 50 1e-04 UniRef50_Q8PY42 Conserved protein n=6 Tax=Methanosarcina RepID=Q... 50 1e-04 UniRef50_C0BGM9 Putative uncharacterized protein n=1 Tax=Flavoba... 49 1e-04 UniRef50_A3CWC6 Outer membrane lipoprotein-sorting protein-like ... 49 3e-04 UniRef50_D1XCD9 Outer membrane lipoprotein-sorting protein-like ... 48 4e-04 UniRef50_UPI0001AED6DA hypothetical protein SalbJ_11848 n=1 Tax=... 48 4e-04 UniRef50_Q08UT2 ABC efflux pump, inner membrane subunit, putativ... 48 4e-04 UniRef50_D2SA91 Putative sigma E regulatory protein, MucB/RseB n... 48 6e-04 UniRef50_Q1IW19 Putative sigma E regulatory protein, MucB/RseB n... 48 6e-04 UniRef50_A7K0G4 Outer membrane lipoprotein-sorting protein n=28 ... 47 7e-04 UniRef50_Q58100 Uncharacterized protein MJ0687 n=3 Tax=Methanoca... 47 7e-04 UniRef50_B1HWT8 Putative uncharacterized protein n=2 Tax=Bacilla... 47 8e-04 UniRef50_Q023A5 Putative sigma E regulatory protein, MucB/RseB n... 46 0.001 UniRef50_Q1K3Y0 Putative sigma E regulatory protein, MucB/RseB n... 46 0.002 UniRef50_C0GKP3 Putative uncharacterized protein n=1 Tax=Dethiob... 45 0.003 UniRef50_B8D1B5 Putative sigma E regulatory protein, MucB/RseB n... 45 0.003 UniRef50_C6MFK6 Putative uncharacterized protein n=1 Tax=Nitroso... 45 0.004 UniRef50_B1ZYB9 Putative uncharacterized protein n=1 Tax=Opitutu... 45 0.004 UniRef50_Q8PY40 Conserved protein n=1 Tax=Methanosarcina mazei R... 44 0.004 UniRef50_Q8PYI1 Conserved protein n=2 Tax=Methanosarcina RepID=Q... 44 0.006 UniRef50_Q2JI91 Putative uncharacterized protein n=2 Tax=Synecho... 44 0.009 UniRef50_Q8TQL2 Putative uncharacterized protein n=1 Tax=Methano... 43 0.012 UniRef50_Q0R4F9 Outer membrane lipoprotein-sorting protein-like ... 43 0.013 UniRef50_B6WQE2 Putative uncharacterized protein n=1 Tax=Desulfo... 43 0.013 UniRef50_B2JPR8 Squalene-associated FAD-dependent desaturase n=6... 43 0.018 UniRef50_A1ZTN2 Putative uncharacterized protein n=1 Tax=Microsc... 42 0.030 UniRef50_Q73L56 Putative uncharacterized protein n=2 Tax=Trepone... 42 0.030 UniRef50_Q89G62 Bll6483 protein n=8 Tax=Proteobacteria RepID=Q89... 41 0.042 UniRef50_B4CUK7 Putative uncharacterized protein n=1 Tax=Chthoni... 41 0.044 UniRef50_Q1IS82 Putative uncharacterized protein n=1 Tax=Candida... 41 0.056 >UniRef50_P0AFY0 Sigma-E factor regulatory protein rseB n=161 Tax=Enterobacteriaceae RepID=RSEB_ECO57 Length = 318 Score = 422 bits (1086), Expect = e-117, Method: Composition-based stats. Identities = 318/318 (100%), Positives = 318/318 (100%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY Sbjct: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK Sbjct: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL Sbjct: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRP 240 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRP Sbjct: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRP 240 Query: 241 LPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGEL 300 LPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGEL Sbjct: 241 LPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGEL 300 Query: 301 PPQTAKRIAENIKFGAAQ 318 PPQTAKRIAENIKFGAAQ Sbjct: 301 PPQTAKRIAENIKFGAAQ 318 >UniRef50_Q7N1X1 Sigma-E factor regulatory protein RseB n=8 Tax=Enterobacteriaceae RepID=Q7N1X1_PHOLL Length = 318 Score = 352 bits (904), Expect = 8e-96, Method: Composition-based stats. Identities = 164/319 (51%), Positives = 229/319 (71%), Gaps = 4/319 (1%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGA-LLQQMNLASQSLNYELSFISINKQGVESLR 59 MK++WF++ L+ GSL ASA +S LLQ+M A++SL YEL+FI++N Q + S+R Sbjct: 1 MKRIWFSVCLLAGSLFAPLQASAQLSSAEVLLQEMGNATRSLTYELAFINLNPQAIVSVR 60 Query: 60 YRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDF 119 YRHA ++ P+AQ++QMDG RREVVQRGNEISYFEPGL+ F+L+G++I+D LP++I+ DF Sbjct: 61 YRHAIINGIPIAQIMQMDGSRREVVQRGNEISYFEPGLDAFSLSGNHIIDYLPAVIFADF 120 Query: 120 KRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGET 179 +L YY+FI VGRT I DR C V+R+ ++D RY+YI+ +D E+ LP+R+DLLDRD E Sbjct: 121 NQLKKYYNFIDVGRTHIGDRPCRVVRITSKDEVRYNYILLIDEETHLPLRIDLLDRDSEA 180 Query: 180 LEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRR 239 LEQFRV++ ++ DI+ +M + + N+PP+L +P EK F+W LP GF EVS SRR Sbjct: 181 LEQFRVVSSTIDGDINDAMSVITRLNMPPMLVIPPSEKVVFNWKVGKLPIGFVEVSRSRR 240 Query: 240 PLPTMDNMPIESRLYSDGLFSFSVNVNRATP-SSTDQMLRTGRRTVSTSVRDNAEITIVG 298 LP ++ +ES ++SDGLFSFSVNV A + LR G RT+ +++R E+TI+G Sbjct: 241 KLP--NSGTLESVMFSDGLFSFSVNVTNADKTGKLEYPLRRGARTIYSAIRGANEVTIIG 298 Query: 299 ELPPQTAKRIAENIKFGAA 317 ELP TAKRIA + F A Sbjct: 299 ELPLATAKRIAAGVAFIGA 317 >UniRef50_Q7MHN3 Negative regulator of sigma E activity n=68 Tax=Bacteria RepID=Q7MHN3_VIBVY Length = 325 Score = 342 bits (877), Expect = 1e-92, Method: Composition-based stats. Identities = 142/318 (44%), Positives = 208/318 (65%), Gaps = 3/318 (0%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 MK+ F++ + + A AS P + ALL QM+ ASQ+L+YEL++I I K +E L Y Sbjct: 1 MKKFLFSVCALFSVMTPQAFASDKP-AEALLHQMSEASQNLSYELAYILIKKNSIEPLLY 59 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 RHA + + A L+ + GP REV++RG+E+SY EPG+EPFT+ +V + ++ +D Sbjct: 60 RHASKEAQQYAHLIYLSGPVREVIKRGHEVSYIEPGVEPFTIQAGEMVAPVMPMLGSDID 119 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 +L +YD++ VGR R A +VIR+V +DG RYSY+VW+D +SKLP+R DL+DRDGE + Sbjct: 120 QLHKFYDYVQVGRAREAGSPTQVIRIVPKDGLRYSYVVWIDEQSKLPLRADLVDRDGEVI 179 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRP 240 EQ+R I + VNQ I+ M L LP +L++P GE K +W +W P+GF SR Sbjct: 180 EQYRAITYTVNQKIADLMSGLEDVQLPAVLTLPKGEVEKSNWRVSWTPEGFVANDLSRYR 239 Query: 241 LPTMDNMPIESRLYSDGLFSFSVNV-NRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGE 299 L D M +ES+L++DGLFSFSV V + S Q++R GRRT+ + V EI++VG+ Sbjct: 240 LALTDQM-VESQLFTDGLFSFSVYVAEKDDHSLKGQLVRQGRRTLHSVVVGEHEISVVGD 298 Query: 300 LPPQTAKRIAENIKFGAA 317 +PP TA+RIA+++ F A Sbjct: 299 IPPATAQRIAQSVTFTAE 316 >UniRef50_A6SXQ7 Sigma-E factor negative regulatory protein RseB n=3 Tax=cellular organisms RepID=A6SXQ7_JANMA Length = 340 Score = 340 bits (872), Expect = 5e-92, Method: Composition-based stats. Identities = 69/329 (20%), Positives = 139/329 (42%), Gaps = 20/329 (6%) Query: 8 MSLVTGSLLFSANAS--------ATPASGALLQQMNLASQSLNYELSFISINKQGVESLR 59 + L + + F+A A + L+++ ++Q LNY +F+ V + R Sbjct: 11 VVLFSSVIAFTAQAENVGASHEHDAHDTQVWLKKIQSSAQKLNYSGTFVYQQGSQVRTSR 70 Query: 60 YRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDF 119 H L +L +DG RE ++ EI+ + P + + D P+++ Sbjct: 71 ITHIFNGKNELEKLEILDGKPREYIRNNEEIACYVPENKSIRVEKRVTKDVFPAILGASP 130 Query: 120 KRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGET 179 L+ +Y+ R+A C+ I + +D RY Y +W + + L ++ ++ + Sbjct: 131 ADLAEHYNLKKGETGRVAGYDCQAIILEPKDKLRYGYKLWAEKSTGLLLKAQTVNEKNDV 190 Query: 180 LEQFRVIAFNVNQ-DISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSR 238 +EQ ++ D S + + + + E WT +P GF ++ + Sbjct: 191 VEQIAFTQLSIGHIDPSRVKSSFPNTQGWRVENAVMSETNLSGWTVKDIPPGFKKIREMK 250 Query: 239 R------PLPTMDNMP-----IESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTS 287 R P +N P + +YSDGL + SV + T S T+ ++ G + Sbjct: 251 RLITDTAPANAAENTPPTQREVSQIVYSDGLAAISVFIESGTQSRTEGSMQQGAMNIVGK 310 Query: 288 VRDNAEITIVGELPPQTAKRIAENIKFGA 316 + + +T+VGE+P K+++ +I+F + Sbjct: 311 RQGDYWLTVVGEVPAAAIKQVSNSIEFKS 339 >UniRef50_Q65QC3 RseB protein n=2 Tax=Pasteurellaceae RepID=Q65QC3_MANSM Length = 326 Score = 325 bits (834), Expect = 1e-87, Method: Composition-based stats. Identities = 115/310 (37%), Positives = 183/310 (59%), Gaps = 5/310 (1%) Query: 6 FAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARL 65 FS + LL +M A LNYE+S++ I +++ RYRH Sbjct: 18 LTALFFILPFSFSVFGQDNLSPKQLLTEMLAAQNKLNYEISYVQIAGAEIDTYRYRHVYN 77 Query: 66 DNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPY 125 + + AQL ++G ++E++QR N ISYF PF++ G I+D+LP+++ DF R+ + Sbjct: 78 EGKSYAQLATLEGGKQEIIQRDNLISYFHSNYSPFSIRGSQIIDNLPNIVNADFSRIEKH 137 Query: 126 YDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRV 185 YDFI++GR RIADRL + +R++ +D RY Y+V+++ ++ L + D+LD+DG LE+FRV Sbjct: 138 YDFINMGRNRIADRLVQTVRILPKDNFRYQYVVFIEEKTHLLLGSDMLDQDGNLLERFRV 197 Query: 186 IAFNVNQDISSSM-QTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTM 244 + F ++ ++ + L+K PP+L K K SW WLPQGF+ +++ L Sbjct: 198 VNFYIDDQMTQPLTDALSKLPTPPVLDKATPPKNKLSWQAGWLPQGFAVLNNY---LTKT 254 Query: 245 DNMPIESRLYSDGLFSFSVNV-NRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQ 303 D IESRLYSDGLFSF++ V N P + + + + G T+ + + E+TI+G++P Sbjct: 255 DEDTIESRLYSDGLFSFTIYVSNNILPENQENVWKQGSFTIYSESMKDKEVTIIGQIPLT 314 Query: 304 TAKRIAENIK 313 TAKRI + IK Sbjct: 315 TAKRIVQEIK 324 >UniRef50_C0N4S1 MucB/RseB family n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N4S1_9GAMM Length = 327 Score = 324 bits (831), Expect = 3e-87, Method: Composition-based stats. Identities = 77/326 (23%), Positives = 147/326 (45%), Gaps = 14/326 (4%) Query: 6 FAMSL-VTGSLLFSANASATP-ASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHA 63 F + L + S+ +SA+ A + +L++M A+++L YE F + + ++S+R H Sbjct: 3 FLLHLFLVMSVAWSASIQANDKEAVQMLERMTEAAKNLTYEGVFAYQSGKTLQSIRIFHR 62 Query: 64 RLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLS 123 + +L+ ++G REV++ + ++ P + ++ + PS + + Sbjct: 63 ADARGEVERLISLNGAAREVIRSNDMVTCINPEGKQVNVSRRPLGRGFPSDLPRRLSSAT 122 Query: 124 PYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQF 183 PYY+ R+A R + + D RY Y +W+D+E+ L ++ +L + GE LE F Sbjct: 123 PYYEVGLGDTDRVAGRQAHELIIKPLDNYRYGYRLWVDSETGLLLKSELRNDQGEVLETF 182 Query: 184 RVIAFNVN---------QDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEV 234 + + + ++ T ++ + + W WLP+GF+ V Sbjct: 183 AFSSVSTSVHIPEHKLKPQMNGEEMTWHRSEPETPMDMAKMTNNVSQWRMQWLPEGFALV 242 Query: 235 SSSRRPLPTMDNMPIESRLYSDGLFSFSVNVN--RATPSSTDQMLRTGRRTVSTSVRDNA 292 + R L + +E R+YSDGL S S+ + RA + G ++ Sbjct: 243 AQQTR-LRASNGAAVEQRVYSDGLSSVSIFIEKIRARHDHLNGGSHVGAINAYGTIMHAH 301 Query: 293 EITIVGELPPQTAKRIAENIKFGAAQ 318 +T+VGE+P T ++I I AAQ Sbjct: 302 FVTVVGEVPAVTVEKIGNAITHIAAQ 327 >UniRef50_C6X6N7 Sigma E regulatory protein, MucB/RseB n=2 Tax=Methylophilaceae RepID=C6X6N7_METSD Length = 322 Score = 323 bits (829), Expect = 4e-87, Method: Composition-based stats. Identities = 77/326 (23%), Positives = 140/326 (42%), Gaps = 14/326 (4%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 MK+ LV+ L +A AT +LQ+ A++ L+Y+ F+ + G S++ Sbjct: 1 MKRGVLGFLLVSHVALATAAGEATGDPWMVLQKAAQAARELSYQGVFVYQSGTGSRSVQI 60 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 H A+++ +DG REV+ +G ++ F P E + + P+++ ++ Sbjct: 61 THMNYGQGEYARIVVLDGTPREVLSQGRDVVIFSPRNEKVVIEKRRGQNMFPAVLPSNLD 120 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 + YD G RI R +++ + +D RY+Y W D E L ++ + E + Sbjct: 121 AIKSSYDVKFGGTERIGGRDGQMVILSPKDKFRYTYKFWADREYGLLLKSMSANERNEPM 180 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKA--------KFSWTPTWLPQGFS 232 EQF + ++S + N+ P + E +WT LP G+ Sbjct: 181 EQFAFNQLTL---MNSQKMDWFQPNVSPEKQYVMEESGAGRSEPVEAITWTVEQLPSGYR 237 Query: 233 EVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRT--GRRTVSTSVRD 290 +V R +P P+ +YSDGL S S+ + ++ + G +V + Sbjct: 238 KVDEITRLVPG-KPAPVTQIVYSDGLASVSLFIEPLLKGMAPKVGHSAFGATHFYANVLE 296 Query: 291 NAEITIVGELPPQTAKRIAENIKFGA 316 ++ +VGE+P T +IA I F Sbjct: 297 GHQVVVVGEVPEATVTQIANTIHFKK 322 >UniRef50_Q3IDL6 Putative anti sigma E (Sigma 24) factor, negative regulator n=3 Tax=Alteromonadales RepID=Q3IDL6_PSEHT Length = 317 Score = 323 bits (829), Expect = 5e-87, Method: Composition-based stats. Identities = 98/318 (30%), Positives = 172/318 (54%), Gaps = 9/318 (2%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 MK + F +SL ++ F+ AS T + LL +M A + N++ SF+ + + +E R+ Sbjct: 1 MKVITFILSL---AISFNTFASDTNPAKDLLLKMANAVHTRNFDASFVVVKGKTMEPYRW 57 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 HA+ D+ + L ++G E+V+ N+++YFEP EP++L D I +P +++ + + Sbjct: 58 LHAKQDDIEIEHLSLLNGAGLEMVRVDNQVTYFEPQSEPYSLTTDSIAGPIPEVLFKNVE 117 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 RLS +YDF+ G+ RI+ R +++R+ ++D +Y+Y +W+D ES L ++ ++ GE L Sbjct: 118 RLSGHYDFVLGGKGRISGRAAQLVRIESKDEDKYNYWIWLDMESSLLLKAAYVNHQGEAL 177 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFS----WTPTWLPQGFSEVSS 236 EQ ++ +V + +S + + N P L E + W WLP GF + S Sbjct: 178 EQLQLTHISVTEQPASMLLEILNRNFPTPLPNNSLETLDSNTAKTWKIDWLPAGFELLKS 237 Query: 237 SRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSST-DQMLRTGRRTVSTSVRDNAEIT 295 R L ++N + L+SDG SV + R P L +G TV N +++ Sbjct: 238 DRHKLD-LNNELTDYYLFSDGFVEVSVFIQRPLPGKRLSGSLTSGATTVYVHNGGNFDVS 296 Query: 296 IVGELPPQTAKRIAENIK 313 +VG +P TAK+IAE++ Sbjct: 297 VVGNIPSLTAKKIAESVT 314 >UniRef50_A6VKY3 Sigma E regulatory protein, MucB/RseB n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VKY3_ACTSZ Length = 318 Score = 323 bits (828), Expect = 5e-87, Method: Composition-based stats. Identities = 114/314 (36%), Positives = 183/314 (58%), Gaps = 3/314 (0%) Query: 2 KQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYR 61 K L++ L A + LL M A Q LNY+ F+ + +L+YR Sbjct: 7 KPTALFACLLSFLLAAPVWAGEELSPQQLLNSMTQAEQQLNYQFIFVQNDNGNNHALQYR 66 Query: 62 HARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKR 121 ++ +N+ AQ+ MDG +R+++QR + +SYF P + PFTL YIVD+LP L+ +F + Sbjct: 67 YSLKENKKYAQMTTMDGVKRDIIQRDDMVSYFRPQMAPFTLKSKYIVDNLPPLMQANFNK 126 Query: 122 LSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLE 181 L+ YYDF ++GR RIADR+ +++R+ +D RY Y+ ++D E+ L +R DLLD+DG L+ Sbjct: 127 LAKYYDFTALGRNRIADRMVQMVRITPKDNFRYRYVAFIDEETHLLLRSDLLDQDGVLLD 186 Query: 182 QFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPL 241 QFR+I V++ ++++ + PPL+S +W WLPQGF ++ + Sbjct: 187 QFRIIQLAVSETPLPFVESVEQLPFPPLISAQSRPGKSSNWKLNWLPQGFRQIRKTETTD 246 Query: 242 PTMDNMPIESRLYSDGLFSFSVNVNRATP-SSTDQMLRTGRRTVSTSVRDNAEITIVGEL 300 +N ESR YSDGLF+F + V+ + + LR G T+ + ++ EIT++G+L Sbjct: 247 DEGNNT--ESRFYSDGLFTFEIFVSDGQKDEAQNSSLRHGAVTIYSETVNDKEITLIGQL 304 Query: 301 PPQTAKRIAENIKF 314 P TAKRI +++KF Sbjct: 305 PIGTAKRIVQDLKF 318 >UniRef50_C4K3Z0 Anti sigma E (Sigma 24) factor, negative regulator n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K3Z0_HAMD5 Length = 317 Score = 322 bits (826), Expect = 9e-87, Method: Composition-based stats. Identities = 137/313 (43%), Positives = 211/313 (67%), Gaps = 3/313 (0%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 M + L+ +L ++ S P +G +LQ+M+ A +SLNYE ++I ++Q ++SLRY Sbjct: 1 MHPFLLFVILLIAALSPNSAGSEQPNAGMMLQEMSTAIRSLNYEFNYIQADEQDIDSLRY 60 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 RH L+ + AQLL+MD R EV Q ++ISYF+ L PFTL G +IVD+ PS++++DF Sbjct: 61 RHVILNGKTFAQLLRMDQLRVEVRQNNDQISYFQSDLTPFTLLGTHIVDAFPSVVFSDFS 120 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 LS YY +I VG+ RIADR+C++IRV+ ++ RYSY +W+D +KLPM+++LL+ +G+TL Sbjct: 121 MLSQYYHYIFVGKMRIADRICQIIRVLPKENNRYSYFIWLDEVTKLPMQINLLNLNGQTL 180 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRP 240 EQF+VI+ N++ +++S +Q L KA +PPL+ +P E F W P WLP GF ++ + Sbjct: 181 EQFKVISLNMDDNLTSFVQNL-KAPVPPLMKLPEEETVNFDWFPKWLPAGFVDIPPNEHQ 239 Query: 241 LPTMDNMPIESRLYSDGLFSFSVNVNRATPS-STDQMLRTGRRTVSTSVRDNAEITIVGE 299 L + SR Y+DGLFSF + V+ +T+ + RRT+ T VRD+ ++T+VGE Sbjct: 240 L-MHKKKFLASRFYTDGLFSFLITVSPVNKKNNTESHFQQSRRTIQTQVRDHIQMTVVGE 298 Query: 300 LPPQTAKRIAENI 312 +P TAKRIA+N+ Sbjct: 299 IPLSTAKRIADNL 311 >UniRef50_B4F051 Anti sigma E (Sigma 24) factor, negative regulator (Sigma-e factor regulatory protein) n=3 Tax=Enterobacteriaceae RepID=B4F051_PROMH Length = 323 Score = 320 bits (820), Expect = 4e-86, Method: Composition-based stats. Identities = 150/324 (46%), Positives = 213/324 (65%), Gaps = 10/324 (3%) Query: 1 MKQLWFAMSLVTGSLLFSANASATP---ASGALLQQMNLASQSLNYELSFISINKQGVES 57 MK+ W + L+ G L A A P + ALLQ+M +Q+ YELSFI+IN QG+ Sbjct: 1 MKKSWLSALLLAGYLSIPTQALAQPQIGNAEALLQKMGNTTQTATYELSFININSQGIVP 60 Query: 58 LRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYT 117 +RYRHA +D +P+AQL+QMD RRE+VQRGNEISYFEPGL+ F+L ++IVD LP++IY Sbjct: 61 IRYRHALVDGKPVAQLMQMDSTRREIVQRGNEISYFEPGLDAFSLRNEHIVDYLPAIIYQ 120 Query: 118 DFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDG 177 +F L+ YY+FI GRT I D V+RV++++ RY Y++++D E LP+RVDLLD++ Sbjct: 121 NFAELAEYYNFIDAGRTHIGDIPSRVVRVLSKNNDRYEYVLFIDEERYLPLRVDLLDKNN 180 Query: 178 ETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKA-KFSWTPTWLPQGFSEVSS 236 + +EQFRVI N N++I S + +L K N+PPLL +P +A ++W T LP+GF EV Sbjct: 181 DVIEQFRVITANQNKEIISELDSLNKVNMPPLLLIPKATQALNYNWRVTTLPEGFKEVKR 240 Query: 237 SRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSS----TDQMLRTGRRTVSTSVRDNA 292 S + +N +S LYSDGLF FS+ VN++ D+ LR GR T+ T +D Sbjct: 241 SNHQIA--ENEFSQSILYSDGLFDFSIYVNKSGQQLNSPERDKALRYGRNTIYTYDKDGN 298 Query: 293 EITIVGELPPQTAKRIAENIKFGA 316 EIT +G+LP TA++I ++ F Sbjct: 299 EITFIGQLPFITAQKIVNSVVFTK 322 >UniRef50_P44792 Sigma-E factor regulatory protein rseB homolog n=23 Tax=Pasteurellaceae RepID=RSEB_HAEIN Length = 315 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 111/295 (37%), Positives = 183/295 (62%), Gaps = 5/295 (1%) Query: 23 ATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRRE 82 ++ L +M A +LNYE++F+ ++S RYRH + DN+ AQL+ +DG ++E Sbjct: 24 EELSAKQSLDKMTQALDNLNYEIAFVQTTPANMDSFRYRHIKQDNKTYAQLVTLDGRQQE 83 Query: 83 VVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCE 142 ++QR N +SYF+P + FTLN IVD++P+++ +F +LS YDF+ +G+ R+A R + Sbjct: 84 IIQRDNLVSYFQPNAQAFTLNSGNIVDAMPAVVRANFDKLSSDYDFVKLGKDRVAGRFAD 143 Query: 143 VIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLA 202 IR+V +D RY Y+V++D E+ L +R D+LDR+G+ L+QFRV+ ++ + + Sbjct: 144 TIRIVPKDDFRYQYLVFIDEENGLLLRSDMLDREGKLLDQFRVVTLYIDDRLRGLTDYIN 203 Query: 203 KANLPPLLSVPVGEK-AKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSF 261 K +LPPLL E+ + +W+ WLPQGFS + ++ ++N I+S LYSDGLF+F Sbjct: 204 KVSLPPLLKESKNEQSSDITWSAGWLPQGFSLIRYTQ---EILENEIIDSALYSDGLFTF 260 Query: 262 SVNVNR-ATPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFG 315 ++ V+ + + + G T+ + V EIT +G+LP TAKRI + +KF Sbjct: 261 TLFVSNVGSNDLPENTWKQGAYTIYSEVIGGKEITFIGQLPISTAKRIVQEVKFR 315 >UniRef50_Q3J8C9 Sigma E regulatory protein, MucB/RseB n=2 Tax=Nitrosococcus oceani RepID=Q3J8C9_NITOC Length = 350 Score = 317 bits (812), Expect = 4e-85, Method: Composition-based stats. Identities = 72/334 (21%), Positives = 147/334 (44%), Gaps = 23/334 (6%) Query: 6 FAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARL 65 ++++ SL ++ ++ + L+ +M A++SLNY+ F+ + +++++ H Sbjct: 15 LLLTILATSLPSASLGKSSDTALQLIDRMGKAAESLNYQGVFVYLQNSRLKAVQVIHKVD 74 Query: 66 DNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVD--------------SL 111 + +L+ ++G RE+++ ++ P + ++ D L Sbjct: 75 EYGEHERLVSLNGMPREIIRNNELVTCILPEDKAVLVDEHRYPDKAVVARSKSFRSNNGL 134 Query: 112 PSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVD 171 + K + +Y F RIA R + + +V RD RY Y +W+D E+ L ++ Sbjct: 135 SRRLPAKLKAMREHYQFSLGKPDRIAGRETQQVVIVPRDQYRYGYHLWIDRETGLLLKTV 194 Query: 172 LLDRDGETLEQFRVIAFNVNQDISSSMQTLAKA----NLPPLLSVPVGE-KAKFSWTPTW 226 + + G+ LEQ + + I + A + S+ + + W W Sbjct: 195 MTEDGGQILEQMMFTSLLLPAKIPDTELVPTVAGREFSWREGESLSMDPDNHESKWKIGW 254 Query: 227 LPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATP---SSTDQMLRTGRRT 283 LP GF+ V+ SR LP P+E +YSDGL S S+ + S G Sbjct: 255 LPAGFALVAHSRDLLPN-SQAPVEHMVYSDGLSSVSIFIEPVRHTKRSHLSGFSSMGAVN 313 Query: 284 VSTSVRDNAEITIVGELPPQTAKRIAENIKFGAA 317 +++ +T+VGE+P T +R+ ++I++ ++ Sbjct: 314 AYGTIQALHYLTLVGEVPHITVERMGKSIRYLSS 347 >UniRef50_C4ZKS3 Sigma E regulatory protein, MucB/RseB n=3 Tax=Rhodocyclaceae RepID=C4ZKS3_THASP Length = 322 Score = 316 bits (811), Expect = 5e-85, Method: Composition-based stats. Identities = 75/321 (23%), Positives = 135/321 (42%), Gaps = 11/321 (3%) Query: 5 WFAMSLVTGSLLFSANASATP--ASGALLQQMNLASQSLNYELSFISINKQGVESLRYRH 62 WF L +LL ASA + L +++ A Q LNY +F+ + VE+ R H Sbjct: 3 WFPAMLGLCALLAQGPASAEHPTDPLSWLGRISTAGQRLNYVGTFVYQSGSHVETSRIAH 62 Query: 63 ARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRL 122 + +L +DG RE+++RG E+ P ++ + P+ + L Sbjct: 63 RVDASGEYERLEVLDGSPREIIRRGAEVRCVLPDERTVIIDEAQGRRAFPARLPASPTGL 122 Query: 123 SPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQ 182 + Y R+A + + + +D RY +++W D +S L ++ LD+ G +EQ Sbjct: 123 AENYRVRKGELGRVAGLEAQALVLEPKDELRYGHVLWADVQSGLLLKSRTLDQHGAVIEQ 182 Query: 183 FRVIAFNVNQDISSSM-----QTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSS 237 F + ++ +S+ +T + V + +A W G++ S+ Sbjct: 183 FSFSELRIGGEVENSLLESRFKTDEGWRMVNARGVSMSVEAA-GWVLEPAVPGYALTSAM 241 Query: 238 RRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQM--LRTGRRTVSTSVRDNAEIT 295 +RPL + ++SDGL + SV + S + L +G + D +T Sbjct: 242 KRPLGRDRGEAV-HMVFSDGLAAISVFIEPIGEGSRAGLGPLSSGAINIFKRAIDGHLVT 300 Query: 296 IVGELPPQTAKRIAENIKFGA 316 +GE P +RI E I+ A Sbjct: 301 ALGEAPEAAVRRIGEGIRPEA 321 >UniRef50_C5V4B6 Sigma E regulatory protein, MucB/RseB n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V4B6_9PROT Length = 314 Score = 315 bits (807), Expect = 2e-84, Method: Composition-based stats. Identities = 69/316 (21%), Positives = 130/316 (41%), Gaps = 9/316 (2%) Query: 8 MSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDN 67 + L +A + + L+ A NY F+ VE+ R H + Sbjct: 3 VWAGLLGLCLAAGMADAASIPEWLKTAAFAGHQTNYSGVFVYQYGNHVETSRISHVVETD 62 Query: 68 RPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYD 127 +L +DGP+RE+++ ++ ++ + ++ P L+ L+ Y Sbjct: 63 SEYEKLESLDGPKREIIRHHGQVWCYQ-NHKMVQVDSQQA-GRFPFLLPDQLAALNENYQ 120 Query: 128 FISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIA 187 +G R+A +V+ RD RY++ +W+ TES L ++ +L+ + +EQ+ Sbjct: 121 AKELGTDRVAGYNAQVVLYQPRDSLRYAHKIWVHTESGLLLKSAVLNEKNQVVEQYAFTE 180 Query: 188 FNVNQDISSSMQTLAKANLP---PLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTM 244 + DI S ++ A LP V W LP GF + RP+ Sbjct: 181 LKIGGDIDRSW-VVSSAALPGFGRNKPVQSKPVVNSGWVVDALPGGFKKTMEIMRPMRG- 238 Query: 245 DNMPIESRLYSDGLFSFSVNVNR--ATPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPP 302 + P+ ++SDGL + SV + A + + G + V D +VGE+PP Sbjct: 239 KHAPVSQLVFSDGLSAISVFIEPADADEDDNEGLTSRGAVNLYHKVVDKHLYNVVGEVPP 298 Query: 303 QTAKRIAENIKFGAAQ 318 + ++ ++I+F + Sbjct: 299 RAVMQVLDSIRFNGNK 314 >UniRef50_Q2SXT9 Sigma factor algU regulatory protein MucB n=56 Tax=Burkholderia RepID=Q2SXT9_BURTA Length = 351 Score = 314 bits (805), Expect = 3e-84, Method: Composition-based stats. Identities = 78/314 (24%), Positives = 146/314 (46%), Gaps = 18/314 (5%) Query: 20 NASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRH-ARLDNRPLAQLLQMDG 78 + + L ++ LA+Q NYE +F+ V+S R H A + ++ +DG Sbjct: 41 PVATRRQAAEWLDRIQLAAQQQNYEGTFVYQRGAYVQSSRIVHVASKGDGEYERVESLDG 100 Query: 79 PRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIAD 138 R++++ +++ F P + DS P+L+ +++ Y+ S+GR R+A Sbjct: 101 KPRKLLRHNDDLYTFVPERRLCVVERRQNKDSFPALLGASGEQVLSVYEPKSLGRDRVAG 160 Query: 139 RLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQ------ 192 +V+ +V +D R++Y +W D ++ L +R LD D LEQ + Sbjct: 161 LDAQVVELVPKDAYRFAYKLWTDAKTGLLLRSQTLDADDRVLEQIAFSQLQLGAAGPSQK 220 Query: 193 -DISSSMQTLAKANL--PPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDN--- 246 I++ M+ L + PP+ V + + W GF ++ RRP+ D Sbjct: 221 TTIAAGMRHLGGWTVVRPPVSPVDIEAQ---GWQIAPTVAGFRKIREVRRPMAARDANDP 277 Query: 247 -MPIESRLYSDGLFSFSVNVNRATPSST-DQMLRTGRRTVSTSVRDNAEITIVGELPPQT 304 +P++ +++DGL + SV + A +S + TG V R + IT++GE PP T Sbjct: 278 PIPVDQAVFTDGLATISVFIEPAEKNSRKEGAGGTGATHVLVKRRGDFWITVLGEAPPAT 337 Query: 305 AKRIAENIKFGAAQ 318 ++ A I++ A++ Sbjct: 338 LQQFASAIEYKASK 351 >UniRef50_B5JX06 MucB/RseB n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JX06_9GAMM Length = 330 Score = 314 bits (804), Expect = 3e-84, Method: Composition-based stats. Identities = 79/325 (24%), Positives = 147/325 (45%), Gaps = 14/325 (4%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 +K ++L+ L +A + L+ M A Q+ +Y +F+ ++ +ES+R Sbjct: 10 LKAFAAGLALLFAPLSLNA---DDASPVEWLKGMCDAMQNQSYTGTFVYLHGNSMESMRV 66 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 D +L+ ++G RE+++R N ++ P L T+N + LP + + Sbjct: 67 VRRHTDAGSDEKLVSLNGEPREILRRNNVVTQILPKLGVVTVNKARVRSQLPLSVPMEID 126 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 + YY G R+A R C+V+ + RD RY + +W+D S+L ++ DLLD G+ L Sbjct: 127 GIERYYQLSLEGVERVAGRRCQVLSLKPRDSYRYGHRLWIDESSRLLIKSDLLDTQGDVL 186 Query: 181 EQFRVIAFNVNQDISSSMQTL----AKANLPPLLSVPVGE--KAKFSWTPTWLPQGFSEV 234 EQ V+ ++ +M A L + + W + PQGF Sbjct: 187 EQIMYTELEVSPQLTDAMFEPEFDTAGLKRRELGHADQQQLLMSDHQWRVSRAPQGFMLT 246 Query: 235 SSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPS---STDQMLRTGRRTVSTSVRDN 291 + RR ++ +E +YSDG+ + SV V + R G V+ + Sbjct: 247 THERR--GASESAAVEHMVYSDGMATVSVFVEPLAKGENMPVEGHSRMGALNAYGRVQGS 304 Query: 292 AEITIVGELPPQTAKRIAENIKFGA 316 ++ +VGE+P T K+++E+++ + Sbjct: 305 HKVVVVGEVPAATVKQLSESVEARS 329 >UniRef50_B8GPK4 Sigma E regulatory protein, MucB/RseB n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GPK4_THISH Length = 324 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 78/319 (24%), Positives = 145/319 (45%), Gaps = 10/319 (3%) Query: 6 FAMSLVTGSLLFSANASATPA-SGALLQQMNLASQSLNYELSFISINKQGVESLRYRHAR 64 + ++ LL S++A A + ALL +M A +SL+YE +F+ I+ Q E+++ H R Sbjct: 6 LSRYVLAVGLLASSHAWADDHRADALLDRMIEAVRSLSYEGTFVYIHGQKTETMQIVHTR 65 Query: 65 LDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIV-DSLPSLIYTDFKRLS 123 + +LL + G REV++ + ++ P + LP+ I Sbjct: 66 DERGERERLLSLTGEPREVIRDEDVLTCVWPASRSVVIEPRRSRLGGLPAAIPDRKFGPD 125 Query: 124 PYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQF 183 Y F G RIA C ++++ D RY + + ++ +S + ++ ++LD G T+EQF Sbjct: 126 SPYRFQVEGEQRIAGLSCRTLQIIPNDDLRYGHRLCINEDSGMLLKSEMLDHQGNTIEQF 185 Query: 184 RVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKA----KFSWTPTWLPQGFSEVSSSRR 239 + D + + + V ++ W +P GF S S+R Sbjct: 186 MFTSIQF-PDYVPDDRFIPVMKGEGFTTHRVDAQSEMNPDPGWRVRDIPDGFRVASVSKR 244 Query: 240 PLPTMDNMPIESRLYSDGLFSFSVNVNRAT--PSSTDQMLRTGRRTVSTSVRDNAEITIV 297 P+ N P++ + SDGL + SV ++RA+ + ++G ++T+V Sbjct: 245 PMAANLN-PVQHLVLSDGLATVSVFISRASSLDDLYMGVTQSGALHAMAVPAGEYQVTVV 303 Query: 298 GELPPQTAKRIAENIKFGA 316 GE+P T + IA+++ A Sbjct: 304 GEVPEATIRMIADSVYHEA 322 >UniRef50_B8F3K5 Periplasmic negative regulator of sigmaE n=2 Tax=Haemophilus parasuis RepID=B8F3K5_HAEPS Length = 321 Score = 309 bits (791), Expect = 1e-82, Method: Composition-based stats. Identities = 119/320 (37%), Positives = 180/320 (56%), Gaps = 8/320 (2%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 MK+ V+ L + A A L MN A Q+LNYE +I V SLRY Sbjct: 1 MKKYITLF--VSLFLSITGFAQPLSTPLAYLTAMNKAHQTLNYEQLYIFQKGDDVTSLRY 58 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 RHA + + AQLL +D R E++ R + + YF +PF+L +I+D P+++Y++F Sbjct: 59 RHAYDNGQEYAQLLHLDATREEMILREDVVGYFG-DYQPFSLKTPHILDDFPTVVYSNFS 117 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 +L Y F+ G++R+ADR+ VIR+V RD RY Y++W+D E+ L ++ LLDRD L Sbjct: 118 QL-EGYAFLDNGKSRVADRIARVIRIVPRDDFRYQYMLWIDEENHLLLQSHLLDRDNNVL 176 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKF-SWTPTWLPQGFSEVSSSRR 239 EQFR I V++ + ++ + LP LL V + K W W+P GF +V+S ++ Sbjct: 177 EQFRTIQSVVDEQLLYIVEPIRTLILPTLLQTKVHSELKPLEWQLKWVPNGFKQVASGQQ 236 Query: 240 PLPTM--DNMPIESRLYSDGLFSFSVN-VNRATPSSTDQMLRTGRRTVSTSVRDNAEITI 296 L + + IESRLYSDGLFSF+V V S DQ R G+ +V + + ++ I Sbjct: 237 NLSEVLAQDEQIESRLYSDGLFSFTVYLVQNKGISFQDQFWREGKTSVYSQTIGDKDVII 296 Query: 297 VGELPPQTAKRIAENIKFGA 316 VGE+P +A+ I + I+F + Sbjct: 297 VGEIPLASARHIVQEIEFSS 316 >UniRef50_Q47WP0 Sigma-E factor regulatory protein RseB n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47WP0_COLP3 Length = 337 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 93/301 (30%), Positives = 164/301 (54%), Gaps = 5/301 (1%) Query: 17 FSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDN-RPLAQLLQ 75 SA + T ++ L++++ + + LN+ SF+ + E + H DN + L + Sbjct: 15 VSAITADTESAKFSLERLSNSLRQLNFSTSFVVVKNNQAEPYHWLHGIGDNEQELEIFTR 74 Query: 76 MDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTR 135 ++GPRR+V+++G +SY EP EP+++ + +PS+ + L Y FISVGR+R Sbjct: 75 LNGPRRDVLRQGKIVSYIEPEQEPYSIISSDVRSPIPSIFRGNISELEESYRFISVGRSR 134 Query: 136 IADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDIS 195 I R+ +++R+V++D R+SY +W+D ++ L +++ +L R G+ LEQ + VN+ ++ Sbjct: 135 ILGRVAQLVRIVSKDKYRFSYWLWLDQKTGLLLKMAVLTRQGQLLEQIQFTHIEVNEQLT 194 Query: 196 SSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNM---PIESR 252 +++ LP ++ + + SW WLPQGFS V S++ L + + +E Sbjct: 195 DNLEQFQLTELPKVVELTQQQNKALSWQVDWLPQGFSVVKSNQHRLNSHNQGNEKAVEFM 254 Query: 253 LYSDGLFSFSVNVNRATPS-STDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAEN 311 L+SDGL SV VN + + G V + E+ IVG +P TAK+IAE+ Sbjct: 255 LFSDGLVEVSVYVNPSQEKFRAPEYASDGATIVFNHILQGIEVGIVGNIPLATAKKIAES 314 Query: 312 I 312 I Sbjct: 315 I 315 >UniRef50_Q1H2L7 Sigma E regulatory protein, MucB/RseB n=1 Tax=Methylobacillus flagellatus KT RepID=Q1H2L7_METFK Length = 316 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 76/320 (23%), Positives = 138/320 (43%), Gaps = 9/320 (2%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 MK+ A L T F A + + +LQ+ A+ L+Y+ FI ++S++ Sbjct: 1 MKRFLLAWLLAT---PFVAAHAESEDPWLVLQKAARAAHELSYKGVFIYQAGDNIKSVQI 57 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 H A+++ +DG REV+ +G ++ F E + + P+++ D + Sbjct: 58 THTNSGQGEYARMVVLDGAPREVLSQGGDVVIFSSKNEKVIMEKRRAHNLFPAVLPDDME 117 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 L Y G RIA R V+ + RDG RY+Y W D E L ++ +L + L Sbjct: 118 LLKANYQARIGGTERIAGRAGRVVFLDPRDGLRYAYKFWADCEYGLLLKSLMLSEQKQML 177 Query: 181 EQFRVIAFNVNQD--ISSSMQTLAKANLPPLLSV-PVGEKAKFSWTPTWLPQGFSEVSSS 237 EQ N+ ++ + ++ + L + +WT LP G+ +V Sbjct: 178 EQMAFSQLNMMEEQGMDWFHPSVDHSKHYILEEANAQLVQEASNWTVGALPVGYRKVEQV 237 Query: 238 RRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRT--GRRTVSTSVRDNAEIT 295 R +P + P+ +++DGL S S+ + + ++ +T G +V +I Sbjct: 238 TRLVPG-KSAPVTQVIFTDGLASVSLFIEPLSKGVRPRIGQTSKGATHFYANVSKGHQIL 296 Query: 296 IVGELPPQTAKRIAENIKFG 315 +VGE+P T +I + F Sbjct: 297 VVGEVPAATVAQIGSAVSFK 316 >UniRef50_A7JWL1 Sigma E regulator RseB n=3 Tax=Pasteurellaceae RepID=A7JWL1_PASHA Length = 327 Score = 307 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 100/320 (31%), Positives = 169/320 (52%), Gaps = 5/320 (1%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 +K+ +++ F+ S A L M+ A + YEL +I ES R Sbjct: 5 IKKYLLLFWVISACYTFAWAESTIKTPLAYLTAMSEAHKKSTYELVYILQQGSDTESFRL 64 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 RHA N+ AQLL +D R E++ + N++SY PF+LN I+D+LP+++YTD+ Sbjct: 65 RHAFTHNKEYAQLLNLDHSREEIILKNNKVSYLGYNFRPFSLNSSQILDNLPNVLYTDYA 124 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 L Y F+ G+ RI+DR+ +VIR+ D RY+YI+W+D E+ L ++ +L+ D L Sbjct: 125 NL-KGYAFLDAGKDRISDRITKVIRMKPNDTLRYAYILWIDEETHLLLKSQVLNMDNLVL 183 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKF-SWTPTWLPQGFSEVSSSRR 239 E+FRV+ + ++ + LP L +V E K W WLP GF + Sbjct: 184 EEFRVLQLYQSPELDRIANVIESLMLPTLTTVKKEEFPKSDGWQVKWLPTGFRLIQQQTV 243 Query: 240 PLPT--MDNMPIESRLYSDGLFSFSVNVNRATPSSTDQ-MLRTGRRTVSTSVRDNAEITI 296 T +++ ++SR+YSDGL + ++ + + S ++ + G+ T+ ++ +I I Sbjct: 244 TGATYQVESEYVDSRVYSDGLSTLTIYIMPSQGVSFNEYAWQQGKLTILNQTINDRDIVI 303 Query: 297 VGELPPQTAKRIAENIKFGA 316 +G++P Q+AK+I NI F Sbjct: 304 IGDVPLQSAKQIMNNIGFKE 323 >UniRef50_Q2SL38 Sigma factor algU negative regulatory protein MucB n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SL38_HAHCH Length = 342 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 86/320 (26%), Positives = 144/320 (45%), Gaps = 11/320 (3%) Query: 3 QLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRH 62 + W +SL+ L SA A A+ LQ+M A Q L+Y +FI + S++ H Sbjct: 16 RQWSLVSLLALISLVSAPAQASG-PQEWLQRMLEARQELSYRGAFIYSRGDEMSSMKVFH 74 Query: 63 ARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRL 122 D +L+ MDG RE+++ G+ + PG + L P + + Sbjct: 75 RTQDGVEKERLVAMDGEMREIIRDGDMLICVFPGGKQVRLEQAAYTGPFPGAVLNGGSDV 134 Query: 123 SPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQ 182 Y+ G R+A + V+A+D RYSY +W++ S + ++ L +R GE LE Sbjct: 135 HSVYELRMAGEERVAGHDVLKMAVMAKDQYRYSYYLWLEKNSGMLLKSLLTNRKGEVLEH 194 Query: 183 FRVIAFNVNQDISSS--MQTLAKANLPPL--LSVPVGEKAKFSWTPTWLPQGFSEVSSSR 238 F+ + ++ ++ KA++ + + WTP WLP+GFS + Sbjct: 195 FQYTVLELGAQVTDQELAPSMPKADVKSVKPEQEEAPDALPEQWTPAWLPKGFSMSPNVT 254 Query: 239 RPLPTMDNMPIESRLYSDGLFSFSVNVNRATPS-STDQMLRTGRRTVSTSVRDN----AE 293 + M + +++Y DGL FS+ V P + R G T + Sbjct: 255 KRNDVMPGD-MRTQVYGDGLTMFSIFVEENNPQAMPEGASRMGATTAYSKHIKQGDMTYV 313 Query: 294 ITIVGELPPQTAKRIAENIK 313 IT+VGE+P +T KR+A+N+K Sbjct: 314 ITVVGEVPIETVKRVADNMK 333 >UniRef50_A4BRZ0 MucB/RseB n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BRZ0_9GAMM Length = 347 Score = 306 bits (785), Expect = 5e-82, Method: Composition-based stats. Identities = 83/323 (25%), Positives = 134/323 (41%), Gaps = 20/323 (6%) Query: 6 FAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARL 65 A LV G+ A+A+ + A+ ALLQ+M A + NY + ++++R H Sbjct: 21 LAACLVLGTRA-QADANESQAAQALLQRMMHAVRFTNYVGVCVYRFGDNLQTIRIVHQVK 79 Query: 66 DNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKR---- 121 + +L+ ++GP RE+++ + + +P N + + D R Sbjct: 80 NGHRYERLISLNGPEREIIRTDAQATRIQPSEHFIAQNLALLNPPFDTAFSGDTARSVAV 139 Query: 122 ---LSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGE 178 Y +G R+A R + +V D RY Y +W+D +S L +R DL+D GE Sbjct: 140 DDFWDNIYGLELLGTDRVAGRETRRLNIVPFDHFRYGYRLWIDEDSGLLLRSDLIDEAGE 199 Query: 179 TLEQFRVIAFNVNQDISS---------SMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQ 229 LEQ I T + + P + G +W LP+ Sbjct: 200 PLEQIMFTRIETPDTIPDQWLESAPNSDAITWHRVHAPHMQ---RGTVMASAWMIGDLPE 256 Query: 230 GFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVR 289 GF +PL N IE LYSDGL + SV + + R G + Sbjct: 257 GFKLAFRGHQPLHGERNDFIEHWLYSDGLATVSVYIRPQGRHPFNGWSRMGAVSTFGRTL 316 Query: 290 DNAEITIVGELPPQTAKRIAENI 312 D+ +I +VGE+P T +RI E++ Sbjct: 317 DDYQIIVVGEVPAVTVRRIGESM 339 >UniRef50_Q2Y876 Sigma E regulatory protein, MucB/RseB n=2 Tax=Nitrosomonadaceae RepID=Q2Y876_NITMU Length = 328 Score = 306 bits (784), Expect = 6e-82, Method: Composition-based stats. Identities = 72/322 (22%), Positives = 139/322 (43%), Gaps = 20/322 (6%) Query: 9 SLVTGSLLFSANAS-------ATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYR 61 SL+ ++ SA A ++P + LQ++ A + NY +F+ ++ +E+ R Sbjct: 8 SLLLTVIVQSAFAQNPSSSSPSSPEALNWLQKIAAAPRHYNYVGTFVYSSEGQIETSRII 67 Query: 62 HARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKR 121 H + + + +DGP RE+++ +E+ + P + ++ P+L+ Sbjct: 68 HLVNEEGEQEKSMVLDGPPREIIRNNDEMRCYLPENKTVVTEKRWLRKVFPALLPQPLIN 127 Query: 122 LSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLE 181 L Y + R++D ++I + RD RY +WMD + L ++ ++D G +E Sbjct: 128 LDHNYVVKKGKQERVSDYASQIIELEPRDDKRYGQKLWMDPNTGLLLKAAVMD-KGRVVE 186 Query: 182 QFRVIAFNVNQDISSSMQ------TLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVS 235 QF + +I S+ A+ L+S G K W P GF ++ Sbjct: 187 QFVFTDLKIGGEIDKSLLKSQYSGQAAEWRKTNLVSSTQGS-GKLGWQVKDPPPGFKKIV 245 Query: 236 SSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATP---SSTDQML-RTGRRTVSTSVRDN 291 +R L + P+ SDGL + SV + ++ S + + G + T + Sbjct: 246 EMKRNLSG-KSRPVAHIALSDGLAAVSVFIEPSSGEASSPVEGLYHSRGAINIYTRTLGD 304 Query: 292 AEITIVGELPPQTAKRIAENIK 313 +T +GE+PP T +I ++ Sbjct: 305 NRVTAIGEVPPATVMQIGNSVT 326 >UniRef50_C6P3S1 Sigma E regulatory protein, MucB/RseB n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P3S1_9PROT Length = 325 Score = 302 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 132/326 (40%), Gaps = 12/326 (3%) Query: 1 MKQLWFAMSLVTGSLLFSANASA-TPASGALLQQMNLASQSLNYELSFISINKQGVESLR 59 M+Q + ++ + SA A L+ M A+ +Y F+ + VE R Sbjct: 1 MRQYSYLFFMLLQLGVASAFADPLRADESDWLKTMAFAAHQTDYSGVFVYQSGGRVEMSR 60 Query: 60 YRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDF 119 H +L + G RRE+++ +++ + G + + I S P+L+ Sbjct: 61 ITHVSDSAGEHERLEGIGGERRELIRDNDQVWLYTDGHK-VRVEKRQIKRSFPALLPEQI 119 Query: 120 KRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGET 179 L Y +A + + RD RY+ +W D++S L ++ +L+ G Sbjct: 120 SLLKENYSVTQAEEDEVAGYHAHAVVFLPRDNLRYARKLWADSDSGLLLKAVVLNDRGLV 179 Query: 180 LEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKF-------SWTPTWLPQGFS 232 +EQ+ + N+ +I K + + + + K W LP GF Sbjct: 180 IEQYAFMQLNIGGNIDRKWIVQDKPSAAMVQELHLSPLPKVELLEEPCGWQVDALPSGFK 239 Query: 233 EVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSS--TDQMLRTGRRTVSTSVRD 290 ++ RRP I ++SDGL SV + ++ +S + G + + Sbjct: 240 KILEMRRPFRANKEHVI-QMVFSDGLAGISVFIEKSQDASYLHSGLSGQGAVHIYNRIVG 298 Query: 291 NAEITIVGELPPQTAKRIAENIKFGA 316 + IT+VGE+P +T ++ +++++ Sbjct: 299 DHLITVVGEVPSRTVIQVGDSVRYAG 324 >UniRef50_A1SR26 Sigma E regulatory protein, MucB/RseB n=2 Tax=Psychromonas RepID=A1SR26_PSYIN Length = 335 Score = 302 bits (773), Expect = 2e-80, Method: Composition-based stats. Identities = 93/331 (28%), Positives = 172/331 (51%), Gaps = 19/331 (5%) Query: 1 MKQLWFAMSLVTGSLLFSANAS----------------ATPASGALLQQMNLASQSLNYE 44 MK L+++ +L+T + A A+ + LQ M A ++LNYE Sbjct: 1 MKLLFYSKTLITAVFILIAGAAFSVQATEMSNDQTVKKDNITAIEYLQLMQTAYKNLNYE 60 Query: 45 LSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNG 104 + +++ K VE + H ++ +A ++G RE +Q +ISYFE G +P+TL Sbjct: 61 ILYLNNLKNTVEPKQLLHGVINQEEIAYFRYLNGAMRESLQYLQKISYFEQGSQPYTLQS 120 Query: 105 DYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTES 164 ++ ++ + Y++I +G+ RIA + IR++++D RYSYIVW+D ++ Sbjct: 121 TRNQSVFANIANFNYDKGLDSYEYIILGKGRIAGKTAMAIRMISKDQYRYSYIVWIDLDT 180 Query: 165 KLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFS-WT 223 LP+R+D ++ L+Q V++ V++ ++ +++L+ LP L + + S W Sbjct: 181 HLPLRLDTINSSNIILDQIMVVSLKVSEQVNPWLESLSNQKLPELFHLSQTSNLQASLWK 240 Query: 224 PTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVN--RATPSSTDQMLRTGR 281 WLP GF+ V + L +N P+ + +DG+ S SV ++ + T + ++ G Sbjct: 241 VDWLPAGFNIVKDDQHKLVMYENEPVSYIMLNDGIVSVSVYISAKKTTSEQQQKTIQRGA 300 Query: 282 RTVSTSVRDNAEITIVGELPPQTAKRIAENI 312 + T ++N EI ++GE+P TAKR+ E+I Sbjct: 301 TVLYTDQKNNFEINVIGEIPVATAKRLIESI 331 >UniRef50_Q15R29 Sigma E regulatory protein, MucB/RseB n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15R29_PSEA6 Length = 333 Score = 301 bits (772), Expect = 2e-80, Method: Composition-based stats. Identities = 93/313 (29%), Positives = 161/313 (51%), Gaps = 5/313 (1%) Query: 7 AMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQ-GVESLRYRHAR- 64 ++ L S A A + ++ L++M+ A +LNY +SF+ + + +RH Sbjct: 20 SVDLPASSHSEPAKAFPSDSAHGWLEKMSHAHSNLNYSISFVLLKPGVDSQPYLWRHGVS 79 Query: 65 LDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSP 124 + QL ++GP REVV+ +++SYFEP + P++L I PS + + Sbjct: 80 ASGVKMEQLNLLNGPGREVVRIDDKVSYFEPNVPPYSLQSRVINGPFPSEFFQQPDEIKD 139 Query: 125 YYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFR 184 YDF+ VGR+R++ R + IR+V++D +R+ VW+D E+ L ++++L+D +G+ LEQ + Sbjct: 140 SYDFVMVGRSRVSGRAAQQIRIVSKDKSRFGMNVWLDQETGLMLKMNLVDLNGQLLEQIQ 199 Query: 185 VIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTM 244 V A +V + + + A LP +L + K W ++P G EV LP Sbjct: 200 VTACHVTEQPDDFFEKIEPAMLPEVLKLRPQTHTKAIWDIAYVPVGMVEVKRDIHRLPIT 259 Query: 245 DNMPIESRLYSDGLFSFSVNVNRATPSSTDQ--MLRTGRRTVSTSVRDNAEITIVGELPP 302 +E + SDGL S+ + + +Q +LR T+ T + +T+VG+LPP Sbjct: 260 GQS-VEYVMLSDGLVDVSIYMRESQNDGINQDILLRHESDTLLTLNQGRLNVTVVGKLPP 318 Query: 303 QTAKRIAENIKFG 315 +TA IA +I Sbjct: 319 ETANHIASSIHLA 331 >UniRef50_B4RVL6 Putative anti sigma E (Sigma 24) factor, negative regulator n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RVL6_ALTMD Length = 328 Score = 300 bits (768), Expect = 5e-80, Method: Composition-based stats. Identities = 92/301 (30%), Positives = 162/301 (53%), Gaps = 5/301 (1%) Query: 17 FSANASATP-ASGALLQQMNLASQSLNYELSFIS-INKQGVESLRYRHAR-LDNRPLAQL 73 +A+A P ++ L ++ + N+++SF+ I + +RH D L QL Sbjct: 25 VTASAETQPQSASQWLAELQNIITNANFQVSFVQTIAGKETVPYLWRHGVMEDGSELEQL 84 Query: 74 LQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGR 133 +GP RE+++ + +S FEP ++P++L +I +PS + ++L+ Y+F++VGR Sbjct: 85 NLQNGPGRELIRINDVVSVFEPDVQPYSLRSKHINGPIPSALLYHPEQLAEAYEFVAVGR 144 Query: 134 TRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQD 193 R+A R + IR+V+RD TR+ Y +W+D S + +++++LD G LEQ +V AF ++ Sbjct: 145 ARVAGRSAQQIRIVSRDNTRFGYQLWLDESSGMLLKLNMLDLQGALLEQIQVTAFAISPT 204 Query: 194 ISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRL 253 + + A+LP +++ W T+LP G E+ R L + +E +L Sbjct: 205 PAEYFSRINAASLPAPMALSTAPARAHKWDVTYLPAGMREIKQDTRRLALTGQV-VEYKL 263 Query: 254 YSDGLFSFSVNVNRATPSSTDQM-LRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENI 312 +SDGL SV V A + + + LR T T A++T+VGE+P QTA IA ++ Sbjct: 264 FSDGLVDVSVYVQPADDALGETLALRNEVSTFLTLTDGKAQVTVVGEIPLQTANAIATSL 323 Query: 313 K 313 + Sbjct: 324 R 324 >UniRef50_UPI0001AEB8D1 putative anti sigma E (sigma 24) factor, negative regulator n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEB8D1 Length = 394 Score = 299 bits (765), Expect = 1e-79, Method: Composition-based stats. Identities = 89/296 (30%), Positives = 161/296 (54%), Gaps = 4/296 (1%) Query: 25 PASGALLQQMNLASQSLNYELSFIS-INKQGVESLRYRHAR-LDNRPLAQLLQMDGPRRE 82 ++ L ++ + N+++SF+ I + +RH D L QL +GP RE Sbjct: 97 QSANQWLAELQNIITNANFQVSFVQTIAGKETVPYLWRHGIMEDGSELEQLNLQNGPGRE 156 Query: 83 VVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCE 142 +++ + +S FEP ++P++L +I +PS++ ++L+ Y+F++VGR R+A R + Sbjct: 157 LIRVNDVVSVFEPDVQPYSLRSKHINGPIPSVLLYHPEQLAEAYEFVAVGRARVAGRSAQ 216 Query: 143 VIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLA 202 IR+V+RD TR+ Y +W+D S + +++++LD G LEQ +V AF ++ + + + Sbjct: 217 QIRIVSRDNTRFGYQLWLDESSGMLLKLNMLDLQGALLEQIQVTAFAISPEPADYFSRIN 276 Query: 203 KANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFS 262 A+LP +++ W T+LP G E+ R L + +E +L+SDGL S Sbjct: 277 SASLPAPMALSNTPNRAHKWDVTYLPAGMREIKQDTRRLA-LTGQIVEYKLFSDGLVDVS 335 Query: 263 VNVNRATPSSTDQM-LRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFGAA 317 V V A + + + LR T T A++T+VGE+P QTA IA +++ ++ Sbjct: 336 VYVQPAEDALGETLALRNEVSTFLTLTDGKAQVTVVGEIPLQTANAIATSLRPVSS 391 >UniRef50_C5S2D4 Periplasmic negative regulator of sigmaE n=2 Tax=Actinobacillus minor RepID=C5S2D4_9PAST Length = 318 Score = 297 bits (762), Expect = 2e-79, Method: Composition-based stats. Identities = 109/321 (33%), Positives = 179/321 (55%), Gaps = 10/321 (3%) Query: 1 MKQL-WFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLR 59 MK++ F ++L+ S S +P LLQ M A ++ NYEL +I +ES + Sbjct: 1 MKKINTFYLALLWCFSSISWATSTSP--IQLLQNMVSAHKNTNYELRYILQQNNDIESFQ 58 Query: 60 YRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDF 119 YRH + AQLL++D R E++ R N +SY +PF+L +I+D+LP+++YTDF Sbjct: 59 YRHTTQSYKEFAQLLRLDNSREEIILRDNTVSYLGLTFKPFSLKSSHILDNLPAILYTDF 118 Query: 120 KRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGET 179 +L Y F +G++R+ADR+ ++++ D +RY Y +W+D E+ L ++ L D +G+ Sbjct: 119 SKLKD-YQFTLLGKSRVADRIANIVKIAPSDNSRYQYTLWIDDENSLLLKSHLQDHEGQI 177 Query: 180 LEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGE---KAKFSWTPTWLPQGFSEVSS 236 LEQF+VI+ V ++ L LPP++ + E K +W WLP GF V Sbjct: 178 LEQFKVISQYVGNELLYVTPYLESLKLPPVIDTSLSEQNIKQDINWKLNWLPSGFYLVKG 237 Query: 237 SRRPL--PTMDNMPIESRLYSDGLFSFSVNVNRATP-SSTDQMLRTGRRTVSTSVRDNAE 293 ++ T +ES+LYSDG+FSF+V V S +Q + G T+ + ++ Sbjct: 238 LKQGFITDTEKITKLESQLYSDGIFSFTVYVFPTEELSFNEQFFKQGNLTIFSHTVEDKN 297 Query: 294 ITIVGELPPQTAKRIAENIKF 314 I ++G++P ++AK+I NI F Sbjct: 298 IVLIGDIPTESAKKIVFNITF 318 >UniRef50_A0KGE8 Sigma-E factor regulatory protein RseB n=2 Tax=Aeromonas RepID=A0KGE8_AERHH Length = 354 Score = 297 bits (760), Expect = 4e-79, Method: Composition-based stats. Identities = 100/300 (33%), Positives = 165/300 (55%), Gaps = 7/300 (2%) Query: 20 NASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGP 79 ++ ++ ALLQQM A N+ELS + + +E +R+ H +D + +A L +DG Sbjct: 47 ASADDKSAEALLQQMQSAVSQQNFELSMVKARQGRLEPIRFSHGVIDGKEVAHLSYLDGK 106 Query: 80 RREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADR 139 E +QR +E ++FE EP+TL G SL+ R+ YD + GR+R A Sbjct: 107 TIEYLQRQDEYTFFENTHEPYTLKGARFPGVWASLVRMPLPRVLESYDPVLAGRSRAAGL 166 Query: 140 LCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQ 199 + +V+R+V ++ +Y +++W+D +S L +RVD++DR+G +EQ + + + + Sbjct: 167 VAQVVRLVPKEADKYGFVLWIDEQSHLLVRVDMVDREGNLVEQVLGVDLDRLPAPAPWLV 226 Query: 200 TLAKANLPP---LLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSD 256 LA + LP L + + +W TWLP+GF +S R L T ++P++ + SD Sbjct: 227 KLAGSKLPQALALEDAYPAPQQQLNWHLTWLPEGFKVLSRDRHQLVTT-SLPVDYMMLSD 285 Query: 257 GLFSFSVNVNRATPSS--TDQMLRTGRRTVSTSVRD-NAEITIVGELPPQTAKRIAENIK 313 GL SV V R P Q++R G ++ + V D EIT+VGE+P TAKRIAE+++ Sbjct: 286 GLVDLSVYVARVDPKQAVRQQLIRQGATSLVSYVNDVGVEITVVGEVPADTAKRIAESVQ 345 >UniRef50_Q126J7 Putative sigma E regulatory protein, MucB/RseB n=3 Tax=Comamonadaceae RepID=Q126J7_POLSJ Length = 352 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 60/298 (20%), Positives = 122/298 (40%), Gaps = 7/298 (2%) Query: 23 ATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRRE 82 + + L +M+ AS+ +Y +F+ + + S + H N+ + ++ + G R Sbjct: 52 ESRSVNDWLMRMHEASKKRSYIGTFVVSSGGAMSSAKVWHVCEGNQQVERVETLTGAPRS 111 Query: 83 VVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCE 142 + + +++ F P + + P L+ + R++ +Y G R+A + Sbjct: 112 IFRHNDQVVTFMPDHKVVRSEKRESLGMFPELLQSTDSRIADFYKMRHDGVERVAGVEAD 171 Query: 143 VIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQD--ISSSMQT 200 V+ +V +D R+ Y +W + + L +++ LD DG+ LEQ ++ + +Q Sbjct: 172 VVMLVPKDSMRFGYRIWTEQKKGLVVKLQTLDADGKVLEQAAFSELQLDAPVKMDQLIQM 231 Query: 201 LAKANLPPLLSVPVGEKAKF--SWTPTWLPQGFSEVSSSRRPLP-TMDNMPIESRLYSDG 257 + K + + + + W GF +S +RP ++SDG Sbjct: 232 MGKVDGYRVEKPVMVKTTASAEGWVLKAPVAGFKPMSCYKRPAANAAPGAEPLQWIFSDG 291 Query: 258 LFSFSVNVNRATPSS--TDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIK 313 L S S+ V + L G T D +TI+GE+P T + A ++ Sbjct: 292 LASVSIFVEPYDRQRHEKESSLSLGATQTLTRQVDAYWVTIMGEVPMATLRHFANGLE 349 >UniRef50_A6FDN5 Sigma-E factor regulatory protein RseB n=1 Tax=Moritella sp. PE36 RepID=A6FDN5_9GAMM Length = 347 Score = 289 bits (741), Expect = 6e-77, Method: Composition-based stats. Identities = 91/302 (30%), Positives = 162/302 (53%), Gaps = 9/302 (2%) Query: 19 ANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDG 78 A A ++ ALL M A + LNY+LS++ I + + +RY H +D+ + LL ++G Sbjct: 41 AAAPPQLSADALLDNMKTAFKQLNYDLSYVEIERGRITPMRYSHGVIDDVSVGHLLSLNG 100 Query: 79 PRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFI-SVGRTRIA 137 RE ++RG+ S+FE ++L+ I L +L+ T+ Y I G++R+ Sbjct: 101 NPREYLRRGDITSFFEAEQPGYSLSSTAIPGLLFNLMATELTLDDSLYQAIYVGGKSRVT 160 Query: 138 DRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSS 197 RL +V+RVV D R+ Y++W+D + LP+R+D++ GE + Q I+ D++ Sbjct: 161 GRLSQVVRVVPNDKYRFGYLIWIDVTTNLPLRIDMIKDSGEVVFQVMAISLYQFPDVTPW 220 Query: 198 MQTLAKANLPPLLSVPV-----GEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESR 252 ++ L LPP+LS E K W W+P GF ++ S++ + + I+ Sbjct: 221 LEQLNSVKLPPVLSAVQTQALLPEPTKSEWKAAWMPDGFKQIVSNKHQIVGIGQ-IIDYM 279 Query: 253 LYSDGLFSFSVNVNRATPSS--TDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAE 310 +SDGL S+ VN + + + +G+ ++ + + D+ EI +VGE+P TAK+IA+ Sbjct: 280 QFSDGLVDISIYVNTNAKAGSLSQGLGVSGQISLQSKITDDIEIVVVGEVPSMTAKKIAD 339 Query: 311 NI 312 ++ Sbjct: 340 SV 341 >UniRef50_C5SBU2 Sigma E regulatory protein, MucB/RseB n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SBU2_CHRVI Length = 337 Score = 289 bits (741), Expect = 7e-77, Method: Composition-based stats. Identities = 84/328 (25%), Positives = 141/328 (42%), Gaps = 21/328 (6%) Query: 1 MKQLWFAMSLVTGSLLFSA---NASATP-------ASGALLQQMNLASQSLNYELSFISI 50 + W A+ L L F A A+A+P + LL +M A +SL+YE + + + Sbjct: 15 LASYWLALGLCC-LLPFQAVVAEATASPDTAESRLSPKVLLARMTEAVRSLSYEGTLVYL 73 Query: 51 NKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDS 110 ++ +E+L H D + +L+ + GP R V + ++ +P ++ Sbjct: 74 HQNQLETLSLDHRIADGQVEERLIALSGPIRAVASGKDRVNCVLTDGQPISVERQ--GGR 131 Query: 111 LPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRV 170 D L +Y +GR RIA R EV+ ++ RD RY Y +D E+ LP++ Sbjct: 132 FLDTEGIDPGALQDHYSVEYLGRARIAGRETEVVGILPRDDLRYGYRFHIDRETALPLKS 191 Query: 171 DLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFS--WTPTWLP 228 DL+DR E LEQ + +N + +T P+ SV + S W +P Sbjct: 192 DLIDRHQEPLEQLMFTSIKLNAPAAPGSETPPD----PVRSVRGAPATRPSSQWRFEPMP 247 Query: 229 QGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSV 288 GF V + D +E L++D L S+S+ + A+ + G + Sbjct: 248 AGFELVMQ--HQIDQADGSRVEHFLFTDRLSSYSIYIEPASDDGLEGGANIGSVHAAGRR 305 Query: 289 RDNAEITIVGELPPQTAKRIAENIKFGA 316 D +IT VGE+P T + ++ A Sbjct: 306 FDEHQITAVGEVPLVTVQAAIASVHRAA 333 >UniRef50_Q07YZ2 Sigma E regulatory protein, MucB/RseB n=22 Tax=Shewanella RepID=Q07YZ2_SHEFN Length = 315 Score = 286 bits (733), Expect = 6e-76, Method: Composition-based stats. Identities = 89/314 (28%), Positives = 153/314 (48%), Gaps = 5/314 (1%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 + + L L F +A ++ A L+ M+ A Y+ S I + + L Y Sbjct: 2 LGVSLRIILLALLVLTFPTHAEDDLSAKAWLKNMSQAMHDKQYKTSIIQLQADHIRPLVY 61 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 H +DN+ +A L ++GP + V+ GN +++ E +++ I P+ + D Sbjct: 62 IHGIVDNKEVALLEYLNGPPKNAVRVGNTVTFIEHDQPAYSVVAPRIQGIWPAALAGDLS 121 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 +L Y F+ GR RIA R ++IR++A D RY VW+D ++ LP+R D L+++ + L Sbjct: 122 QLEKGYQFVIGGRGRIAGRPGQMIRLLANDDNRYDAQVWIDMDTYLPLRFDSLNKEKQLL 181 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRP 240 EQ VI + ++ + AK P +++ K +W TWLP+GF V Sbjct: 182 EQTMVIELIELTEPANILIEAAKQEWPAVMNQAERTDGK-NWQFTWLPEGFDVVVRDHHR 240 Query: 241 LPTMDNMPIESRLYSDGLFSFSVNVNRA--TPSSTDQMLRTGRRTVSTSVRDNAEITIVG 298 L + + P+E +DGL + SV V RA P + ++R G V V E+ +G Sbjct: 241 LIGI-HEPVEYVALTDGLANISVYVARAGENPMPNELLIRNGLSMVVVKV-GTLEVVAIG 298 Query: 299 ELPPQTAKRIAENI 312 ++P +T +IA ++ Sbjct: 299 KVPSETLDKIANSL 312 >UniRef50_A3WPR5 Negative regulator of sigma E activity n=1 Tax=Idiomarina baltica OS145 RepID=A3WPR5_9GAMM Length = 321 Score = 286 bits (733), Expect = 6e-76, Method: Composition-based stats. Identities = 83/293 (28%), Positives = 155/293 (52%), Gaps = 3/293 (1%) Query: 23 ATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARL-DNRPLAQLLQMDGPRR 81 A M+ A N+E S + + + +E + HA + L ++QM+GP Sbjct: 30 AQSDGERWYDFMSTALNEQNFEASLVYVLGERIEPYHWLHAVEPNGEQLELIVQMNGPGF 89 Query: 82 EVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLC 141 ++ G+++S+F P ++L + I +P F+++ YY ++VG R+ DR Sbjct: 90 RALRIGDKVSHFHPAARDYSLRANSINHLIPPAFSEKFEKIQSYYRVVAVGGARVLDRKA 149 Query: 142 EVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTL 201 + IR++++ R+ + VW+D +S +P++V +++ DG +EQ ++ + + QD S ++ L Sbjct: 150 QHIRLISKHDNRFGFSVWVDRDSGMPLKVMMINEDGIPVEQVQMTSLALRQDPSPLLEEL 209 Query: 202 AKANLPPLLSVPVGEKA-KFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFS 260 + ++PPL+ V + + S P W P+GF V L +DN P++ L++DGL Sbjct: 210 KRLSMPPLIQVTTNSQQMQRSLRPLWHPEGFKLVEQKHHQLA-VDNTPVDHYLFTDGLTE 268 Query: 261 FSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIK 313 +SV + T M G + + T R++ IT+VG++P QTAKRI ++ Sbjct: 269 YSVYIAPRDAEQTGAMSVVGSQNLYTEPRNDVIITVVGQIPIQTAKRIVAEVQ 321 >UniRef50_Q3SH43 Putative Sigma E regulatory protein, MucB/RseB n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SH43_THIDA Length = 318 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 73/305 (23%), Positives = 133/305 (43%), Gaps = 6/305 (1%) Query: 11 VTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPL 70 G +L S A A ++ LQ+ A++ NY ++ + VE LR H R Sbjct: 16 FAGLMLLSGLARAN-SALEWLQRAASAAKEQNYSGIYVYHHGDEVEVLRVLHRNDGRREQ 74 Query: 71 AQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFIS 130 + MDG +R ++ +++ + L + P+ + L+ Y+ Sbjct: 75 EKTEVMDGTQRHFLRVNSDVYCHLADGKQVRLERNASRRFFPAFLPARAAGLAELYEVKL 134 Query: 131 VGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNV 190 G R+A R C+V+ + RDG R+++ +W+D+ + LP++ +++ DGE + F + Sbjct: 135 GGVERVAGRPCQVVMLEPRDGYRHAFQLWLDSRTGLPLKSRIVNSDGEVVSMFVFSEVQI 194 Query: 191 NQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIE 250 + +S+ + + V +G++ W+ T P GF V + R LP N P+ Sbjct: 195 GRPPDASLFR-NELAGKQVQQVSLGQRIDLPWSVT-PPPGFERVQEAVRTLPG-RNTPVT 251 Query: 251 SRLYSDGLFSFSVNVNRATPS--STDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRI 308 ++SDGL S+ + A P S + G V D IT VGE+P Sbjct: 252 HLVFSDGLSVLSMFIEPADPGVPSLQGLSAEGAIGVYARALDGHTITTVGEVPNLALIET 311 Query: 309 AENIK 313 +++ Sbjct: 312 GNSVR 316 >UniRef50_Q5R102 Negative regulator of sigma E activity n=1 Tax=Idiomarina loihiensis RepID=Q5R102_IDILO Length = 321 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 80/316 (25%), Positives = 151/316 (47%), Gaps = 5/316 (1%) Query: 2 KQLWFAMSLVTGSLLFSANA--SATPASGALLQQMNLASQSLNYELSFISINKQGVESLR 59 + + L G+ SA + +M A LN+E S + ++ +E + Sbjct: 7 RSILCGAVLFAGTFSVSAQQTNEQAESGADWFNRMAEALTELNFEASLVHVHGDQIEPYQ 66 Query: 60 YRHARLDN-RPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTD 118 + L+QM+GP +++ N++++F + L D I P+ Sbjct: 67 WLQGNDPETGSTELLIQMNGPDFRILRVNNKVAHFNTSSSNYALESDTITAIFPAAFSQP 126 Query: 119 FKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGE 178 F+RLS Y + G R+ R + IR+++RD RYSY +W+D + +P+++ ++++ G+ Sbjct: 127 FERLSHSYQVMVGGGARVLGRNAQHIRILSRDNQRYSYALWIDRKHGMPLKMIMMNQSGD 186 Query: 179 TLEQFRVIAFNVNQDISSSMQTLAKANLPPLLS-VPVGEKAKFSWTPTWLPQGFSEVSSS 237 +EQ ++ + +V + ++ +PPLL + V +S P W P+GF +S Sbjct: 187 VVEQMQLTSLSVRDTAPEITKEISNIEMPPLLKDLRVQSATNYSVGPRWAPRGFKLLSQQ 246 Query: 238 RRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEITIV 297 L +D P++ L+SDGL +SV V T + + T+ + +N +T+V Sbjct: 247 SHTL-VVDATPVDHYLFSDGLAEYSVYVAELTEGMETDLALSSSHTLFSKRYNNFLVTVV 305 Query: 298 GELPPQTAKRIAENIK 313 G++P A+RIA +K Sbjct: 306 GQVPLTMAQRIAAEVK 321 >UniRef50_Q0A8Z7 Sigma E regulatory protein, MucB/RseB n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A8Z7_ALHEH Length = 339 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 76/313 (24%), Positives = 129/313 (41%), Gaps = 12/313 (3%) Query: 7 AMSLVTGSLLFSANASATPASG-ALLQQMNLASQSLNYELSFISINKQGVESLRYRH-AR 64 L+ + A A G LL+++ + L+Y + + +E+LR H Sbjct: 18 LAVLMLALISVGAWADQGDNPGLRLLERIGEQTPQLHYHGILVYRHGGDMETLRIIHRGG 77 Query: 65 LDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSP 124 ++ + + G REV+++ +E+ P E + + + + + + L Sbjct: 78 AEHERSERFYTLTGIPREVIRKPDEVICILPDAEAVVVGRRQLRNPIAQALPRYTEALQE 137 Query: 125 YYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFR 184 Y+ G R+ADR + + +V RD RY + +W+D L +R DLLD + LEQ Sbjct: 138 AYEVTLAGEGRVADRDAQQVLIVPRDDLRYGHRLWIDEAYGLLLRADLLDEHQQVLEQVM 197 Query: 185 VIAFNVNQDISSSMQTLA------KANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSR 238 V + + + P + E+ + W +P GF +S + Sbjct: 198 FTEVTVVEAVPDAWLEPGISGESFTWVRPADRADAAPEQRR--WQVAEVPPGFRLISHRQ 255 Query: 239 RPLPTMDNMPIESRLYSDGLFSFSVNVNR-ATPSSTDQMLRTGRRTVSTSVRDNAEITIV 297 R + D P+E YSDGL S SV V+ A ++ R G RD +T+V Sbjct: 256 RQIAGHDP-PVEHLHYSDGLASVSVYVSPQAADKVRERAARMGLMGAVRVPRDGFTVTVV 314 Query: 298 GELPPQTAKRIAE 310 GE+P T AE Sbjct: 315 GEVPRATLHLFAE 327 >UniRef50_C1DQR7 Sigma factor algU negative regulatory protein MucB n=2 Tax=Azotobacter vinelandii RepID=C1DQR7_AZOVD Length = 317 Score = 283 bits (725), Expect = 5e-75, Method: Composition-based stats. Identities = 75/321 (23%), Positives = 142/321 (44%), Gaps = 16/321 (4%) Query: 5 WFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRH-- 62 +F++ L+ GS+ S A+ + L ++ A Q +++ F+ + H Sbjct: 3 FFSLLLLVGSMAMSVQAAD---AQNWLSRLLKAEQRQSFQGVFVYERNGSFSTHAIWHQA 59 Query: 63 ARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRL 122 + D +LL++DG EV++ + + + G+ P D ++L Sbjct: 60 GQNDGESRERLLRLDGAPVEVMRVDGRLKCGSSAVADQLIEGE---GPWPPR-PLDPQKL 115 Query: 123 SPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQ 182 + +Y+ VG +R+A R V+ ++ RD RY + + +D E+ LP++ LL+ G+ LE+ Sbjct: 116 AEWYEIRMVGESRVAGRSAVVLTILPRDQYRYGFELHLDRETSLPLKSLLLNEKGQLLER 175 Query: 183 FRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLP 242 + + + ++ A P+ + + +W WLP GF+ S +P P Sbjct: 176 LQFTQLDTSTPLTKDKLEPGPA-CQPVEVLQTSTPKQGAWRSEWLPPGFTLRSMHTQPSP 234 Query: 243 TMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVR-----DNAEITIV 297 + I +Y DGL FSV + + + TV S R + +T++ Sbjct: 235 -VSGENITYLMYGDGLARFSVFIEPLHSALVEDARSQLGPTVVVSKRISTADGDMMVTVI 293 Query: 298 GELPPQTAKRIAENIKFGAAQ 318 GE+P TA+RI +I+ Q Sbjct: 294 GEVPLGTAERIVLSIRASEEQ 314 >UniRef50_Q2KW13 Sigma-E factor regulatory protein n=5 Tax=Bordetella RepID=Q2KW13_BORA1 Length = 341 Score = 282 bits (723), Expect = 8e-75, Method: Composition-based stats. Identities = 67/307 (21%), Positives = 123/307 (40%), Gaps = 13/307 (4%) Query: 19 ANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDG 78 A ++ P LL + A+++ +Y F+ ++S R H +L +DG Sbjct: 36 AQSAPLPDPVQLLADIQQAARTQDYAGVFMYQQGDTMQSSRLVHIVDGTGERERLEILDG 95 Query: 79 PRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGR-TRIA 137 RE ++ + P E L D P L+ D K L+ +Y + + R+A Sbjct: 96 QPREYLRHNENVQCLIPEHETVLLERRR-GDRFPGLLLGDPKDLTKHYVIRAESKLHRVA 154 Query: 138 DRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDIS-- 195 DR C I + RD RY Y + D ++ L ++ +D +EQ + V D+ Sbjct: 155 DRQCRPISIEPRDALRYGYRLCADVDTNLLLKAQTVDGKRGVVEQVSFSSLRVGSDVDAG 214 Query: 196 SSMQTLAKANLPPLL-SVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLY 254 S + + + + A W P+GFS V R + + + Sbjct: 215 SLNSRWNTRDWRIVEPDMKPVDLAALGWRI-PAPEGFSPVMQVTRQMG---KGTVSQVVL 270 Query: 255 SDGLFSFSVNVNRAT----PSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAE 310 SDGL + SV + +++ G + + + +T++GE+P T + +A+ Sbjct: 271 SDGLAAISVFIEPYDGTRHHHPPAGLVQRGSINIYGTRIADYWMTVLGEVPAATLETLAQ 330 Query: 311 NIKFGAA 317 N ++ A Sbjct: 331 NTEYVPA 337 >UniRef50_A1WT21 Sigma E regulatory protein, MucB/RseB n=1 Tax=Halorhodospira halophila SL1 RepID=A1WT21_HALHL Length = 329 Score = 282 bits (723), Expect = 8e-75, Method: Composition-based stats. Identities = 82/324 (25%), Positives = 130/324 (40%), Gaps = 15/324 (4%) Query: 3 QLWFAMSLVTGSLLFSANASATPASG----------ALLQQMNLASQSLNYELSFISINK 52 + WF +L+ L + AN A G L +M A +YE F+ Sbjct: 6 RAWFLRALLCAGLFWIANGQVALAEGTDRGAGEEGREALNRMVEALDQHSYEGIFVYARA 65 Query: 53 QGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLP 112 VE++ H D+ +L + G RE+++ P + L G +V SL Sbjct: 66 GVVETVHIVHRAGDSGRHQRLEMLTGSHREMIRTPEGALLAGPIAKGDRLRGSGVVTSLG 125 Query: 113 SLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDL 172 Y G R+A R VI V D RY + +W+D ES LP+ L Sbjct: 126 EGWPRADSISEDLYRIQLQGEGRVAGRPTTVIAVEPLDQLRYGHRLWVDEESGLPLHAQL 185 Query: 173 LDRDGETLEQFRVIAFNVNQDISSSMQTL---AKANLPPLLSVPVGEKAKFSWTPTWLPQ 229 LD +E+ +F + DI + A+ + L+ + + W +P Sbjct: 186 LDGR-RVIERLLFTSFTLRDDIDAEELEPVGEAQRRVERRLAEESDDSGEPEWEVIDVPA 244 Query: 230 GFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVR 289 GFS ++ R P P PIE L+SDGL S SV + P + R G Sbjct: 245 GFSRIAHGRIPSPEPGQDPIEHLLFSDGLASVSVYIAP-EPGGNEGQARAGALHAYERPV 303 Query: 290 DNAEITIVGELPPQTAKRIAENIK 313 ++ ++T +G++P +T +R A + Sbjct: 304 EDHQVTAIGDVPAKTVERFARQTR 327 >UniRef50_Q0VP13 Negative regulator for alginate biosynthesis n=2 Tax=Alcanivorax RepID=Q0VP13_ALCBS Length = 326 Score = 282 bits (721), Expect = 1e-74, Method: Composition-based stats. Identities = 88/330 (26%), Positives = 153/330 (46%), Gaps = 19/330 (5%) Query: 1 MKQLWFAMSLVTGSLLFS--ANASATPASGALLQQMNLASQSLNYELSFISINKQGVESL 58 ++ L F+++L + + S A A+ +PA LQ M A++SLNY F+ V ++ Sbjct: 3 LRVLAFSLTLCSPVMALSEVALANTSPAQDQ-LQSMAQANRSLNYTGRFLYQFGAEVSTM 61 Query: 59 RYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTD 118 HA + R +L +DG EV++RG+E+ P +N + P + Sbjct: 62 EVSHAVIGGREFQRLTHLDGRLVEVLRRGDEVVCLHPNGTLTRINRKHSG---PLALGDR 118 Query: 119 FKRLSPY-YDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDG 177 R P Y+ + G R+A R +RV D RY Y +W+D +S L ++ +++D G Sbjct: 119 IARDVPAQYNILVDGDGRVAGRATTRMRVAPLDTYRYGYRLWLDNDSSLLLKSEIVDGSG 178 Query: 178 ETLEQFRVIAFNVNQDISSSM----QTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSE 233 LE+ ++ + ++ +T+ +++L PL + S W+P GF+ Sbjct: 179 VALERVEFVSLTLAAPLTEQDFSIPETVKESDLKPLE--DSHPSHRLSVEAQWMPPGFTS 236 Query: 234 VSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSS-TDQMLRTGRRTVSTSV---- 288 V R D P+ ++ YSDGL +F+V V S + + R G + Sbjct: 237 VDQDWRQ-SGSDREPVAAQGYSDGLAAFTVFVEAVDGGSVEEGVSRVGPTVAVSRRLTAP 295 Query: 289 RDNAEITIVGELPPQTAKRIAENIKFGAAQ 318 +T+VGE+P TA+R+ E I+ +Q Sbjct: 296 SGAYLVTLVGEVPQSTAERVIEGIRVRDSQ 325 >UniRef50_A3Y8F0 MucB/RseB n=1 Tax=Marinomonas sp. MED121 RepID=A3Y8F0_9GAMM Length = 317 Score = 280 bits (718), Expect = 4e-74, Method: Composition-based stats. Identities = 70/316 (22%), Positives = 132/316 (41%), Gaps = 10/316 (3%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 ++++ + L+ S A P L+ +M A +L+YE F+ + + S++ Sbjct: 3 LRRISLVTITLVSLLVTSVKAQENPG-LVLMNRMVEAFSTLSYEGVFVRSHDSHMNSMQV 61 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 RH+ +D LL +DG + EV++ + + P + F N D I + + Sbjct: 62 RHSVIDGVEYESLLDLDGEKIEVIRIDDSVICVYPNMS-FANNADPITTPFKRFEEFNGE 120 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 RL Y+F+ + +A R + + + RD RY + W+D E+ ++ D L G+ L Sbjct: 121 RLLKGYNFVVTKQGLVAGRRAQKLELRPRDQYRYGHEFWLDIETGFLLKHDTLKSSGKIL 180 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRP 240 ++ + + NV+ ++S + + + W WLP GF+ V R Sbjct: 181 DRVQFTSLNVSPNLSKNDFVPRMGTYAEHVIEVTPKSIPSHWVFDWLPAGFAPVWRGARQ 240 Query: 241 LPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVR----DNAEITI 296 + +M L SDG+ S S+ + S ++ G +T Sbjct: 241 INDNASM----MLLSDGMTSVSIFIESTKESKPLTVMSMGSTIAGEKTSMMNGKPFLLTA 296 Query: 297 VGELPPQTAKRIAENI 312 VGE+P T +++ I Sbjct: 297 VGEVPDATIRKLLSVI 312 >UniRef50_B9ZJG1 Sigma E regulatory protein, MucB/RseB n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJG1_9GAMM Length = 327 Score = 279 bits (713), Expect = 1e-73, Method: Composition-based stats. Identities = 74/328 (22%), Positives = 137/328 (41%), Gaps = 18/328 (5%) Query: 4 LWFAMSLVTGS--LLFSANASATP-ASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 +W + LV + L A A + L++M + + +Y+ +F+ ++++R Sbjct: 1 MWRGLPLVLAATALCLPAQVLADEASPSEWLERMTTSLHAESYQGTFVLQRDDRIDTIRV 60 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSL-PSLIYTDF 119 H D +L + G RE+++ + +S + +GD L P+ Sbjct: 61 VHVAEDGGYRERLETLTGAEREILRSVDRLSAIKGARGA---SGDGAQSPLGPAGAPVSL 117 Query: 120 KRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGET 179 + Y G R+A C +I ARD RYS+ + +S LP+ +L D G+ Sbjct: 118 LQEHDLYSLDIQGLDRVAGYPCTLILARARDALRYSHRYCLHMDSALPLLSELYDPKGKL 177 Query: 180 LEQFRVIAFNVNQDISSSMQTL--AKANLPPLLSVPVGEKAKF-------SWTPTWLPQG 230 LE+ ++ +I+ S +A + + +K ++ W LP G Sbjct: 178 LERLAFTDLELSGEIAESELEPTTDQAEHIEVRADRGHKKPQWDDDNGLGGWKFGELPPG 237 Query: 231 FSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRAT-PSSTDQMLRTGRRTVSTSVR 289 F V+++ R L D + + SDGL S SV V A S + R G + V Sbjct: 238 FQAVAATERSLGNGDEIS-RHFVLSDGLASVSVYVEPADGEKSFEGTTRAGATHAAARVM 296 Query: 290 DNAEITIVGELPPQTAKRIAENIKFGAA 317 ++T VG++P T +++ + + + A Sbjct: 297 AGHQVTAVGDVPHVTVQQVLDAVYYQGA 324 >UniRef50_C4LBZ4 Sigma E regulatory protein, MucB/RseB n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBZ4_TOLAT Length = 320 Score = 278 bits (711), Expect = 2e-73, Method: Composition-based stats. Identities = 91/321 (28%), Positives = 170/321 (52%), Gaps = 12/321 (3%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 M ++ L+ F ASA P++ ALL QM N+EL I + +E LR Sbjct: 1 MHRIVLTFFLI---GSFITKASAEPSAEALLFQMQRGYHHNNFELVMAHILQNNIEPLRL 57 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 H + + LL + G E + + ++++ E +TL + S++ + + Sbjct: 58 THGWNNRTEITHLLTLSGRPIEYLGKNKQVTFAESAQISYTLQESQLPGLWFSMLNSSPE 117 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 L YY+ +S G++RIA ++ +++R+ A++ ++YS+I+W++ ++ + +R+D+ D G + Sbjct: 118 TLLKYYEVVSTGKSRIAGQVAQLVRLTAKEDSKYSFIIWLEQKTGILLRLDVNDAQGNLV 177 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPV---GEKAKFSWTPTWLPQGFSEVSSS 237 EQ+ I F + + S++++TLA +PP + E A WT WLP GF +SS Sbjct: 178 EQYLGIDFRLLSENSTNIKTLASMKVPPAATSHDIYRAEPASHQWTLGWLPSGFVPLSSD 237 Query: 238 RRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSS----TDQMLRTGRRTVSTSVRDN-A 292 + L D + ++ + SDGL SV ++R++ + +Q+ G ++ + RD+ Sbjct: 238 QHKLIGSDEL-VDYFMLSDGLVDVSVYISRSSAETKGREKEQIAMHGATSIFSINRDDGV 296 Query: 293 EITIVGELPPQTAKRIAENIK 313 +T+VGELP + +RIAE I+ Sbjct: 297 TLTVVGELPLLSLRRIAETIR 317 >UniRef50_Q608M1 Putative sigma-E factor regulatory protein n=1 Tax=Methylococcus capsulatus RepID=Q608M1_METCA Length = 332 Score = 277 bits (710), Expect = 3e-73, Method: Composition-based stats. Identities = 77/294 (26%), Positives = 126/294 (42%), Gaps = 5/294 (1%) Query: 29 ALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGN 88 L M A L+Y + V + + H+ + +L ++ P RE+V+ G+ Sbjct: 39 EWLTGMREAMSRLSYRGRVAYLKDDKVNGMEFVHSMANGVEHERLTSLNSPMREIVRDGD 98 Query: 89 EISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVA 148 + +F P + + S + F L YY F+ + +A R + I +V Sbjct: 99 RVQFFFPETKSVMTERVPVSRSFLVDLPESFVGLCDYYAFLVGDQEYVAQRHTQTIEIVP 158 Query: 149 RDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPP 208 D RY VW+DTES+LP+R +LLD + + +EQ I+ V+ + T A+ Sbjct: 159 VDDYRYGRKVWIDTESRLPLRFELLDENSKPVEQMVFISLEVSGEAPGREVTPMPASGDY 218 Query: 209 LLSVPVGE---KAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNV 265 E W+ +P GF SR P + PIE L SDGL S S+ V Sbjct: 219 SEQSSNREIIPIEAMDWSLDSVPVGFRISGYSRVQHPPL-RHPIEHILLSDGLSSVSIYV 277 Query: 266 -NRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFGAAQ 318 +++ + G T D +T++GE+PP+T IA I+ ++ Sbjct: 278 DEPKDEPFVEKLKKIGAVNAYTRKIDGFVVTVMGEVPPKTVHMIANGIQHQKSK 331 >UniRef50_A0YCK6 Sigma factor algU negative regulatory protein MucB n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YCK6_9GAMM Length = 331 Score = 276 bits (707), Expect = 6e-73, Method: Composition-based stats. Identities = 68/327 (20%), Positives = 138/327 (42%), Gaps = 25/327 (7%) Query: 7 AMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLD 66 + A + L +M+ + + L+Y +F ES R H+ +D Sbjct: 15 LFVFACLIMPAGGLVYADDSPQIALSRMSHSFRELDYHGTFSFQRGSSTESFRIAHSVID 74 Query: 67 NRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYY 126 +L +DG +RE+V+RG+ ++ PG + + L + + +Y Sbjct: 75 GEEFERLEYLDGEKREIVRRGHHLNCIHPGHKLL----RFYQQQQAQLGSSANAGVGSFY 130 Query: 127 DFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVI 186 +F G R+A R ++++ +D R+ + + +D E+ L +R +L+ LE+F+ + Sbjct: 131 EFAVNGTGRVAGREVVNLQIIPKDTHRFEHHLSLDKETGLLLRTELIGPGKTVLERFQFV 190 Query: 187 AFNVNQDISSSMQTLAKANL------PPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRP 240 + + ++ A A+ P + + G WT W+P GF+ Sbjct: 191 EITIGEPLAGEQFVDAGASYQAYHTEPSVTANVAGNTVGDGWTVQWMPTGFTST------ 244 Query: 241 LPTMDNMPIESRLYSDGLFSFSVNVNRATP-----SSTDQMLRTGRRTVSTS----VRDN 291 + + + + ++DGL FSV + + + G T T Sbjct: 245 VANVKFVTGDIATFTDGLTVFSVFLESDVDLNLVQRGLEGRAQKGATTAYTRLLVLADRP 304 Query: 292 AEITIVGELPPQTAKRIAENIKFGAAQ 318 IT+VGE+P QTA++IA++++ +++ Sbjct: 305 HRITVVGEIPAQTAQQIAQSVRLVSSR 331 >UniRef50_Q0K8M7 Negative regulator of sigma24 activity n=10 Tax=Burkholderiaceae RepID=Q0K8M7_RALEH Length = 359 Score = 275 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 68/311 (21%), Positives = 125/311 (40%), Gaps = 19/311 (6%) Query: 26 ASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARL-DNRPLAQLLQMDGPRREVV 84 + A L +++ A+Q NY + I + + R +H + +L +DG REV+ Sbjct: 47 DATAWLNKIHKAAQRENYVGTLIYQRGSVMHASRIQHYSDLVHNEYERLETLDGKPREVL 106 Query: 85 QRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVI 144 ++ + + P + + D P+L+ T+ + YD + R+A CEV Sbjct: 107 RQNDVVHSLIPEAKLVVVEKQEAKDRFPALLATNKNDVLDLYDMRKMPAERVAGMECEVF 166 Query: 145 RVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVN-----QDISSSMQ 199 + D RY+ +W + S L MR + G+ LEQ + Q I +++ Sbjct: 167 ALEPHDAARYAVRLWAEKNSGLLMRAQTIGDGGKVLEQVAFSQVQIGVPSEKQHILGAIK 226 Query: 200 TLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMP----------I 249 + N + P A W+ +GF ++ RRPL + + Sbjct: 227 NSSSWNRYEVTYQPTN-IADEGWSIAVPLKGFQKIREVRRPLGELRAPAPGNARGQVFEV 285 Query: 250 ESRLYSDGLFSFSVNVNRATPS--STDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKR 307 +YSDGL SV + + + + G V + IT+VGE+P T ++ Sbjct: 286 LQVVYSDGLTGLSVFIEPVSEQRVRREGVAALGATQVVVRRIADFWITVVGEVPASTVRQ 345 Query: 308 IAENIKFGAAQ 318 A +++ + Sbjct: 346 FATAVEYRPPK 356 >UniRef50_UPI0000E11523 putative anti sigma E (sigma 24) factor, negative regulator n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E11523 Length = 347 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 82/316 (25%), Positives = 164/316 (51%), Gaps = 9/316 (2%) Query: 5 WFAMSLVTGSLLFSANAS------ATPASGALLQQMNLASQSLNYELSF-ISINKQGVES 57 +F + + SL +A A+ + LL +M A+ +LNY + + Sbjct: 21 FFTVLFLLYSLPINAQAANNMPQATNIEAPELLAKMAEATNTLNYASTLIVYRPGAEPVP 80 Query: 58 LRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYT 117 ++H D+ P+ L +++GP + ++ GN++SYF P + +L +I + Sbjct: 81 YLWKHGIKDDVPVEMLSELNGPNAKTLRYGNQVSYFNPDMSAHSLLQSHIHGPFAHNLIR 140 Query: 118 DFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDG 177 + ++ Y+ I VG++R+A +RV++RD +RY+YI+W+D S LP+++++++ G Sbjct: 141 YPEAIATAYEVIVVGKSRVAGNEAWQVRVLSRDNSRYNYILWVDAASFLPLKLNMVNAKG 200 Query: 178 ETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSS 237 + +EQ + + + ++ +A +LP ++ + + + +W T LP G +V Sbjct: 201 DLIEQVQATNLTITDTLDNAFVDMALKDLPAVMHINPPKSFRLNWGVTHLPLGMKQVKRD 260 Query: 238 RRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTG-RRTVSTSVRDNAEITI 296 L +++ +E L SDG+ SV + +AT + +L T T + V DN ++++ Sbjct: 261 IHRLSITEDV-VEYILLSDGMVDVSVYLQKATYQQAEDVLFTKDAVTFLSRVTDNIQVSV 319 Query: 297 VGELPPQTAKRIAENI 312 VG++PP TA+RI + I Sbjct: 320 VGKIPPATAQRIMQMI 335 >UniRef50_A6VUA2 Sigma E regulatory protein, MucB/RseB n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VUA2_MARMS Length = 321 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 78/312 (25%), Positives = 138/312 (44%), Gaps = 11/312 (3%) Query: 3 QLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRH 62 ++F + +T S + S ++ TP + LL+ M + +L+Y+ F+ + S+R RH Sbjct: 8 HIFFTLVCLTISGI-SVASNTTPDALHLLRSMTQSFSTLSYDGVFVHSEAMNMNSMRVRH 66 Query: 63 ARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRL 122 + L+ +DG + EV++ ++I P + +V + RL Sbjct: 67 DLMGGVEYESLVDLDGDKIEVLRIDDKIISVYPNALVANMRAP-LVPPFKRFKDVESDRL 125 Query: 123 SPYYDFISVGR-TRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLE 181 YD I +RIA R +++V +D RY + W+D E+ ++ D++ DG+ LE Sbjct: 126 IKGYDMIVDDHTSRIAGRKVISVKLVPKDQYRYGHQFWLDEENHFLLKHDMMKTDGKLLE 185 Query: 182 QFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPL 241 + + + N D+ + + + + K W WLP+GFS V R L Sbjct: 186 RIQFASVNFAPDLKDKDFVPKEGSYAEPVVETQPRRVKNLWQFDWLPEGFSLVWPEARSL 245 Query: 242 PTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTV---STSVRDN-AEITIV 297 N L SDG+ + S+ V S T +L G S V+D +T+V Sbjct: 246 ----NHGTSMLLLSDGMATVSIFVEPTMKSKTMSILNMGATIAGERSIKVKDQLYLLTMV 301 Query: 298 GELPPQTAKRIA 309 GE+P T +++ Sbjct: 302 GEVPEPTIEKLM 313 >UniRef50_A1WMW7 Sigma E regulatory protein, MucB/RseB n=5 Tax=Comamonadaceae RepID=A1WMW7_VEREI Length = 357 Score = 275 bits (703), Expect = 2e-72, Method: Composition-based stats. Identities = 72/299 (24%), Positives = 126/299 (42%), Gaps = 16/299 (5%) Query: 28 GALLQQMNLASQSLNYELSFISINKQG-VESLRYRHARLDNRPLAQLLQMDGPRREVVQR 86 L++M A +Y +F+ ++ G + S R HA R + ++ + G R V +R Sbjct: 59 AQWLERMRSAPCHRSYAGTFVVLSANGAMSSARIWHACDGQRQMERVESLSGTPRTVFRR 118 Query: 87 GNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRV 146 +E+ F P + V P + + +Y +G+ R+A + +V+ Sbjct: 119 DDEVRTFLPQQRIVRADRRDAVGLFPPVPPVSGTSVGQFYVSRLMGQERVAGFVADVVWF 178 Query: 147 VARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVN-----QDISSSMQTL 201 D R+ Y +W + ++ L +++ L DG LEQ ++N ++ M Sbjct: 179 KPVDTLRFGYRLWSERDTGLAVKLQTLAPDGRVLEQAAFSELDLNAPVQVDQLARLMDAT 238 Query: 202 AKANL--PPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMP-IESRLYSDGL 258 A L PP++ E+ WT GF VS RR + D+ P + LYSDGL Sbjct: 239 AGYKLIAPPVVKTTAKEE---GWTLRQPVAGFVPVSCHRRAVSMADDAPSVLQCLYSDGL 295 Query: 259 FSFSVNVNRATPS---STDQMLRTGRRTVST-SVRDNAEITIVGELPPQTAKRIAENIK 313 S S+ + P + Q+ G + V + +T VGE+P T + A ++ Sbjct: 296 ASVSLFLEPFDPQHHPARPQISGMGATQLLAQRVAPDMWVTAVGEVPLSTLRLFAGQLE 354 >UniRef50_P38108 Sigma factor algU regulatory protein mucB n=27 Tax=Pseudomonadaceae RepID=MUCB_PSEAE Length = 316 Score = 274 bits (701), Expect = 3e-72, Method: Composition-based stats. Identities = 79/307 (25%), Positives = 130/307 (42%), Gaps = 13/307 (4%) Query: 17 FSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARL-DNRPLAQLLQ 75 + A+ + L ++ A + +++ +F+ + H D +LLQ Sbjct: 14 MAVPATQAADASDWLNRLAEADRQNSFQGTFVYERNGSFSTHEIWHRVESDGAVRERLLQ 73 Query: 76 MDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTR 135 +DG R+EVV+ GL + L + D +L+ +YD VG +R Sbjct: 74 LDGARQEVVRVDGRTQCISGGLADQLADAQ-----LWPVRKFDPSQLASWYDLRLVGESR 128 Query: 136 IADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDIS 195 +A R V+ V RD RY + + +D ++ LP++ LL+ G+ LE+F+ N + Sbjct: 129 VAGRPAVVLAVTPRDQHRYGFELHLDRDTGLPLKSLLLNEKGQLLERFQFTQLNTGAAPA 188 Query: 196 SSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYS 255 Q A A + + +W WLP GF+ S R P + P+ Y Sbjct: 189 ED-QLQAGAECQVVGPAKADGEKTVAWRSEWLPPGFTLTRSFMRRSPVTPD-PVACLTYG 246 Query: 256 DGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVR-----DNAEITIVGELPPQTAKRIAE 310 DGL FSV + + TV S R +T+VGE+P TA+R+A Sbjct: 247 DGLARFSVFIEPLHGAMVGDARSQLGPTVVVSKRLQTDDGGQMVTVVGEVPLGTAERVAL 306 Query: 311 NIKFGAA 317 +I+ AA Sbjct: 307 SIRPEAA 313 >UniRef50_C5CSF0 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Variovorax paradoxus S110 RepID=C5CSF0_VARPS Length = 356 Score = 273 bits (698), Expect = 6e-72, Method: Composition-based stats. Identities = 69/321 (21%), Positives = 129/321 (40%), Gaps = 17/321 (5%) Query: 9 SLVTGSLLFSANASATPASG---ALLQQMNLASQSLNYELSFISIN-KQGVESLRYRHAR 64 L SA A P LQ+M+ ++ NY +F+ + S R H R Sbjct: 32 GLANAKGTASAQAGDAPPPMSVVEWLQRMHTGARQRNYIGTFVVSAAGGDLSSARIWHVR 91 Query: 65 LDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSP 124 + + ++ + GP R +R + + F P + + +D P+L + Sbjct: 92 DGDLQIERIEALSGPPRSTFRRNHHVMTFLPEAKVVKVEKRENLDLFPNLPDKPDSSIGD 151 Query: 125 YYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFR 184 +YD +VG+ R+A +V+++V DG R+ Y +W + S L +++ +D + +EQ Sbjct: 152 FYDVRAVGKDRVAGFDADVVQLVPHDGLRFGYRIWSERRSGLVVKLQTVDAESRVVEQSA 211 Query: 185 VIAFNVNQDISSS--MQTLAKANLPPLLSVPVGEKA--KFSWTPTWLPQGFSEVSSSRRP 240 ++ I + Q ++ + + + + + W GF S RRP Sbjct: 212 FSELQLDAPIKAQALAQMMSNTSGYRVEKLELERTSAQDEGWVLKAPVAGFKPRSFYRRP 271 Query: 241 LPTMDNMPIE---SRLYSDGLFSFSVNVNRATP--SSTDQMLRTGRRTVSTSVR----DN 291 + + +SDGL S S+ + R + D +L G + Sbjct: 272 AGSDSKAGQDRTVQWTFSDGLASVSLFIERYDEKRAPRDGVLTIGATNAIRRRLPEPASD 331 Query: 292 AEITIVGELPPQTAKRIAENI 312 +T VGE+P QT A+++ Sbjct: 332 WWLTAVGEVPQQTLNAFAQSL 352 >UniRef50_B3PJ99 Sigma factor algU regulatory protein MucB n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PJ99_CELJU Length = 332 Score = 272 bits (695), Expect = 2e-71, Method: Composition-based stats. Identities = 73/303 (24%), Positives = 131/303 (43%), Gaps = 25/303 (8%) Query: 21 ASATPASGALLQQMNLASQSLNYELSFISINKQG--VESLRYRHARLDNRPLAQLLQMDG 78 +S +LL +M S +NY+ +F +K ++ R H D +L ++G Sbjct: 41 SSNNEEVASLLAKMATRSHQVNYQGTFTYQHKDNPALQGFRIFHWVEDGIQYERLQHLNG 100 Query: 79 PRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIAD 138 P RE+ + G + GD ++ + +L+ Y F G R+A Sbjct: 101 PEREISRSGRALDC--------KSLGDQLLQGKILNMGARLAQLTELYRFEIRGIERVAG 152 Query: 139 RLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSM 198 R V+ + D RYSY + +D E+ L ++ L+D LE+++ + +N D++ Sbjct: 153 RNATVLLAIPLDNYRYSYFLSIDNETGLVLKSWLVDESARPLERYQFVELELNPDLTQIK 212 Query: 199 QTLA-----KANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRL 253 Q A++ P K W W P GF V + I+ + Sbjct: 213 QLPKPRLHRDADIAVPECNPSDVKEPSGWHLNWAPPGFVFVGQKQVR------DHIDMLM 266 Query: 254 YSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSV----RDNAEITIVGELPPQTAKRIA 309 Y+DGL SFS+ + ++ +S + + + G + + +T+VGE+P TA++IA Sbjct: 267 YTDGLTSFSIFIEPSSQASPEGVAQRGATLAAMDQLEIGSERYRVTVVGEIPVVTAQKIA 326 Query: 310 ENI 312 +NI Sbjct: 327 QNI 329 >UniRef50_A1U2X0 Sigma E regulatory protein, MucB/RseB n=3 Tax=Marinobacter RepID=A1U2X0_MARAV Length = 352 Score = 270 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 71/307 (23%), Positives = 126/307 (41%), Gaps = 18/307 (5%) Query: 18 SANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMD 77 + + PA+ A L+++ A +Y F+ + V S+R H + R +L+ D Sbjct: 36 TTKSGEAPAAMAWLERLGPALNMTSYRGVFVYARGEQVHSMRIAHRYRNGRVEERLVMQD 95 Query: 78 GPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIA 137 G E+V++G + P L+ + +Y G R+A Sbjct: 96 GGSGEIVRKGMNVVCVLPDRGRVRLDEVIPSGPFAEAFTSQLMPFGRWYLPELAGEDRVA 155 Query: 138 DRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSS 197 ++ + ARD RYS+ +W++ E+ L ++ + D +GE LE F+ + DIS Sbjct: 156 GYDVVIVALGARDDDRYSHRLWLEKETGLLVKSQVRDVNGEVLEHFQFTDLEITDDISDE 215 Query: 198 MQTLAKANLPPLLSVPVGEKAKF------SWTPTWLPQGFSEVSSSRRPLPTMDNMPIES 251 + ++ G K + WT +W P+GF P + ++ Sbjct: 216 ELEVQTRGREISRTLDDGRKQESSVGRMNGWTLSWQPEGFV-------PAAAPRSGSGKA 268 Query: 252 RLYSDGLFSFSVNVNRATP-SSTDQMLRTGRRTVSTSVR----DNAEITIVGELPPQTAK 306 +SDGL +FSV V R G T+ I +VGE+PP TA+ Sbjct: 269 VAFSDGLAAFSVFVEPVGRLKMPTGASRIGATTIYMREVMVSDRPFLIAVVGEIPPGTAR 328 Query: 307 RIAENIK 313 ++A+ ++ Sbjct: 329 KVADAVE 335 >UniRef50_Q1N1C1 Sigma factor algU negative regulatory protein MucB n=1 Tax=Bermanella marisrubri RepID=Q1N1C1_9GAMM Length = 339 Score = 265 bits (679), Expect = 1e-69, Method: Composition-based stats. Identities = 74/300 (24%), Positives = 128/300 (42%), Gaps = 15/300 (5%) Query: 24 TPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREV 83 + + Q M + +Y+ F+ +++ H + +LL +DGP REV Sbjct: 45 SLTAEGWYQTMRERAPEAHYQGIFVHQAGNESQTVEIVHGTHQDAIWERLLHLDGPVREV 104 Query: 84 VQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEV 143 +++G+ + P + S +L Y F +G+ RI RL Sbjct: 105 IRQGDAVYCIYPDRSVEQIQQKDST-PFGSNSLGQLNQLQTAYGFRMLGQERIVGRLAMG 163 Query: 144 IRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDI-----SSSM 198 I++V RD R+ Y +W+D ++ +P+R +L+ GE LE+++ F+ + + + Sbjct: 164 IQLVPRDKARHVYQMWIDQQTFVPLRTELMTLKGEILERYQFAYFSPVETLSVDAFAPKT 223 Query: 199 QTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGL 258 + A P + + W WLP GF++ + R+YSDG+ Sbjct: 224 PGVELAEAPQDEVLKSTPEDVIEWRLNWLPVGFAD-----QGAKGYAPKLSARRIYSDGI 278 Query: 259 FSFSVNVNRATPSSTDQMLRTGRRTVSTSVRD----NAEITIVGELPPQTAKRIAENIKF 314 FSV V R G +S +D IT+VGE+P TAKRIAE+++ Sbjct: 279 VMFSVFVEAVDEIKDQGFARVGPTVLSVMHKDWQDQTHRITVVGEIPAATAKRIAESVEL 338 >UniRef50_A2SDG7 Sigma E regulatory protein, MucB/RseB n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SDG7_METPP Length = 340 Score = 265 bits (678), Expect = 1e-69, Method: Composition-based stats. Identities = 71/336 (21%), Positives = 131/336 (38%), Gaps = 29/336 (8%) Query: 7 AMSLVTGSLLFSANASATPASGA-------LLQQMNLASQSLNYELSFISINKQGVESLR 59 A+ L+ L + A A L +++ A+ N++ +F+ V S R Sbjct: 3 AVVLMAALLPSATRAQAGGDPLVEARDARYWLARIHEAAGKRNFQGTFVVTAAGSVASSR 62 Query: 60 YRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDF 119 H ++ +DG R+V + + + P + + P L+ Sbjct: 63 IVHFCDGRNQFERIESLDGQHRQVYRHNDLVHSLWPHSRVAVVETRQAMGQFPLLLSAGA 122 Query: 120 KRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGET 179 R+ P+YD S+G R+A V+ + +DG R+ Y +W + S L +R ++ D Sbjct: 123 DRIVPFYDVKSLGDGRVAGHEANVLLLQPKDGYRFGYRLWAERSSGLLLRSEVFDERDVV 182 Query: 180 LEQ--FRVIAFNVNQDISSSMQTLAKANLPPLL--SVPVGEKAKFSWTPTWLPQGFSEVS 235 LE F ++ V S +Q + + + + ++ + + W LP GF VS Sbjct: 183 LETSAFSEVSIGVKPRPESVLQAMKRLDGYRVERPTLQQVDIGREGWLLNALPPGFRHVS 242 Query: 236 SSR-----------RPLPTMDNMP-----IESRLYSDGLFSFSVNVNRATP--SSTDQML 277 S + RP + P + +YSDGL SV + P + ++ Sbjct: 243 SVKRLMTVAGGEQPRPAAAQEEFPLAPPSVLQVIYSDGLTYVSVFIEPYMPRLHRREMLM 302 Query: 278 RTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIK 313 G R IT++G++P T + A ++ Sbjct: 303 SLGATQTLVKRRGEWWITVIGDVPVVTLRAFAAALE 338 >UniRef50_UPI0000E87AE1 Putative Sigma E regulatory protein, MucB/RseB n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87AE1 Length = 317 Score = 265 bits (678), Expect = 2e-69, Method: Composition-based stats. Identities = 65/321 (20%), Positives = 131/321 (40%), Gaps = 12/321 (3%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 +++L+F + ++ + +L + + AS+ LNY+ +F N + ++S+ Sbjct: 2 VRKLFFLALICVSG---TSASLTIEDPWKILTEAHQASKMLNYQGTFHLKNSKVIQSMEI 58 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 HA ++ MDG E++ G I ++ + PS++ + + Sbjct: 59 THAIHGEDEYTRMTLMDGDPGEMLSHGKNIFVYDSKENNVVIQKREQHHLFPSVLPSTPE 118 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 L Y R+ADR +++ ++ +D R+ + W+D ++ LP+++ + + E + Sbjct: 119 NLKKVYTLSFGEVVRVADRPAQMLTLIPKDNFRHQFHFWIDQDTALPLKMIVSNEANEII 178 Query: 181 EQFRVIAFNV-----NQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVS 235 EQ + + L+K + V KF WT P+GFSE+S Sbjct: 179 EQASFTKLKIVDMKTDLSWFKPKIDLSKEYVMHEEEPVVLPGLKF-WTFVNKPKGFSEIS 237 Query: 236 SSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPS--STDQMLRTGRRTVSTSVRDNAE 293 SS + N+ +YSDGL SV + + +S + Sbjct: 238 SSATRNKDL-NVLSHHLIYSDGLSYISVFIQPVQTGLMPKVGTISMEGTNISARYYRGYQ 296 Query: 294 ITIVGELPPQTAKRIAENIKF 314 + VG +P + + ++I F Sbjct: 297 VMAVGTVPMKALESFTKSISF 317 >UniRef50_A1TLE5 Putative sigma E regulatory protein, MucB/RseB n=2 Tax=Acidovorax RepID=A1TLE5_ACIAC Length = 352 Score = 264 bits (676), Expect = 2e-69, Method: Composition-based stats. Identities = 66/296 (22%), Positives = 127/296 (42%), Gaps = 12/296 (4%) Query: 30 LLQQMNLASQSLNYELSFIS-INKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGN 88 +++++ AS+ +Y SF+ + G+ S R HA + ++ +DG R V ++ + Sbjct: 54 WVERIHRASREQSYRGSFVVWSSAGGMTSSRIWHATDGKVQIERIEALDGSPRTVFRKDD 113 Query: 89 EISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVA 148 + F P + P L + + +Y +G R+A + ++ + Sbjct: 114 LVRTFLPKARVVKEERRDMPGLFPHLPQAESSAVLRHYRARFLGSDRVAGQDASILWLEP 173 Query: 149 RDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQ--FRVIAFNVNQDISSSMQTLAKANL 206 RDG R+ Y +WM S L +++ L G+ LEQ F I F+ + + Sbjct: 174 RDGLRFGYRIWMARPSGLVVKLQTLGLRGQVLEQAAFSQIDFDTPPTVPQLAAQMDDTRG 233 Query: 207 PPLLSVPVGEKA--KFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIE--SRLYSDGLFSFS 262 LL+VP+ + + W + GF +R + MP+ ++SDGL + S Sbjct: 234 FRLLAVPLVKTTAREAGWQLSRPVAGFVPGDCYKRDPAVLARMPMPPLQCIFSDGLATVS 293 Query: 263 VNVNR---ATPSSTDQMLRTGRR-TVSTSVRDN-AEITIVGELPPQTAKRIAENIK 313 + A + + + G T++ V +T VGE+P +T +++ E I+ Sbjct: 294 LFFEPYDAARHAGEPRRMDMGATQTLAQRVAGGSIWLTAVGEVPQETLRQLVEQIE 349 >UniRef50_Q6SFI4 MucB/RseB family protein n=1 Tax=uncultured marine bacterium 580 RepID=Q6SFI4_9BACT Length = 314 Score = 262 bits (671), Expect = 8e-69, Method: Composition-based stats. Identities = 76/305 (24%), Positives = 135/305 (44%), Gaps = 10/305 (3%) Query: 16 LFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQ 75 +F + A ++L++ ASQ LNYE F S + S HA +DN+ L Sbjct: 14 VFPLLSFAMEDPWSILEKSAKASQQLNYEGVFHSQSSSESNSTHVIHANIDNKEYCLLKM 73 Query: 76 MDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTR 135 +DG EV G+ + + + + PS++ +D K L Y + R Sbjct: 74 LDGAPNEVFCSGDMV--YVTSQDGLLIKKRKNQFLFPSVLPSDIKHLKKNYQLSFGEKKR 131 Query: 136 IADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFN----VN 191 +ADR+ + I + A+D R++Y +W+D ++ LP+++ + + + +EQ ++ Sbjct: 132 VADRMAQHIELKAKDNLRFNYHIWIDEKNLLPLKLIVTNNKNQPIEQSTFTTIAFSEVID 191 Query: 192 QDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIES 251 +DI L+K + + KF W LP GF EV R + + N+ Sbjct: 192 KDIFEKNINLSKIYVSKNKFIENYVSNKF-WNLKDLPSGFKEVDLISRRVNGL-NLLDYQ 249 Query: 252 RLYSDGLFSFSVNVNRATPS--STDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIA 309 ++SDGL S+ + T + + G +S +D +I VG +PP+T + Sbjct: 250 IIFSDGLAYVSLFIRPITRGTEPKEGTVAIGPTNISARYQDGYQIMSVGMVPPETVNTFS 309 Query: 310 ENIKF 314 I+F Sbjct: 310 GAIEF 314 >UniRef50_Q7NWD0 Negative regulator for alginate biosynthesis MucB n=1 Tax=Chromobacterium violaceum RepID=Q7NWD0_CHRVO Length = 321 Score = 262 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 74/313 (23%), Positives = 133/313 (42%), Gaps = 7/313 (2%) Query: 11 VTGSLLFSANASAT-PASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRP 69 + G L+F A +A LL+ + A + + +++ +E+ R + Sbjct: 6 LIGVLMFGAACAAHAEDDMQLLRNVGNAGRQQPLDGTYLHQMNGTLETFRIVRQGQGDNV 65 Query: 70 LAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFI 129 + +DGP REVV++G E++ F P + P+L+ D ++ Y Sbjct: 66 REKRTSLDGPTREVVRKGRELTCFAPDKRALMACKISAMRLFPALLPDDLDDITRSYALK 125 Query: 130 SVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFN 189 G R+A R C+ + + RD RY+ + ++ + LP++V L G+ +EQF Sbjct: 126 RTGHDRVAKRDCQWLDLQPRDAQRYTMRMCIEPATYLPLKVMTLSPRGDAVEQFTFTDVE 185 Query: 190 VNQ--DISSSMQTLAKA-NLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDN 246 + D + L++ L S E A T LPQGF + S +R LP Sbjct: 186 LGGAKDKRAYASRLSQRFQLRSGASAGSEEAAASQSEVTGLPQGFRLLRSVQRVLPGQGG 245 Query: 247 MPIESRLYSDGLFSFSVNVNRATPSST--DQMLR-TGRRTVSTSVRDNAEITIVGELPPQ 303 P+ + SDGL SV V P +++ G ++TS + + ++T VG++P Sbjct: 246 KPVRHMVLSDGLVMLSVFVEPPPPEHARLEKVGNLHGAINMATSYQGDMQLTAVGDMPQT 305 Query: 304 TAKRIAENIKFGA 316 + + + Sbjct: 306 AMMALLKGLHVNG 318 >UniRef50_B7RX56 MucB/RseB family protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RX56_9GAMM Length = 319 Score = 261 bits (667), Expect = 3e-68, Method: Composition-based stats. Identities = 69/325 (21%), Positives = 129/325 (39%), Gaps = 28/325 (8%) Query: 1 MKQLWFAMSLVTGSLLFSANA-SATPASGALLQQMNLASQSLNYELSFISINKQ-GVESL 58 + L+ SL SA A + L +M+ + +NY + ++ + Sbjct: 10 LSLGALGGFLMLASLTASAVCPGADSEAIKWLDKMSRSVHQVNYHGVVTFQRGEEDMQVM 69 Query: 59 RYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTD 118 + H+ D + Q+ G +VV+ + + PG + + D I Sbjct: 70 QVSHSVTDGTTTESMTQLTGQGAKVVRAEHPLECIHPGHKLLRIGDD---------INAG 120 Query: 119 FKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGE 178 ++ +Y F R+A R I V D RY Y++ +D + L ++ + R + Sbjct: 121 ECGVAEHYRFSVTDGERVAGRKAVRIIVAPGDMYRYGYVMELDRRTGLLLKTATMGRGDK 180 Query: 179 TLEQFRVIAFN--VNQDISSSMQTLAKANLP-PLLSVPVGEKAKFSWTPTWLPQGFSEVS 235 LE+F+ + + + +A P P + P A + W WLP GF Sbjct: 181 VLEKFQFADLSYKGKDPEGADANLVHEAQHPVPGHNAPQVSAAGYGWDVKWLPSGFMATD 240 Query: 236 SSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPS--STDQMLRTGRRTVSTSVR---- 289 S +R + Y+DGL FSV + + ++R+G T + Sbjct: 241 SQQRNAG--------RKTYTDGLAVFSVFIEALDREIRPGEGVVRSGSTTSYSRGMALSG 292 Query: 290 DNAEITIVGELPPQTAKRIAENIKF 314 + +T+VGE+P TA+ +A+++K+ Sbjct: 293 EPVLVTVVGEVPVNTARMVADSVKW 317 >UniRef50_B8KFV0 Putative negative regulator for alginate biosynthesis n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KFV0_9GAMM Length = 322 Score = 259 bits (663), Expect = 8e-68, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 129/319 (40%), Gaps = 29/319 (9%) Query: 6 FAMSLVTGSLLFSANASA-TPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHAR 64 F + L +L+ + PA LLQ M+ +Q +Y ++ + H+ Sbjct: 24 FLVLLAPATLVAQPQCESLDPAVAQLLQAMSNNAQQASYSGVVTLQRGSDMQIMELSHSV 83 Query: 65 LDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSP 124 + + +L+++ G V + G+ PG + +++ F L+ Sbjct: 84 SNGQASEELVRLTGQDARVERSGHPTGCMHPGHQLLRA---------ANVLNGSFCGLAS 134 Query: 125 YYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFR 184 Y F RIADR +RV RD R+ +++ +D ++ L ++ D LEQF+ Sbjct: 135 VYKFRVQPGDRIADRESVRLRVEPRDMYRFGHVLELDQDTALILKSSTFAADQRVLEQFQ 194 Query: 185 VIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTM 244 + ++ + +A+ P + SW WLP GF Sbjct: 195 FASLSMRPGEPNDAVIAHEASHPHPHE-SAHLRTGVSWELAWLPDGFM----------AT 243 Query: 245 DNMPIESR--LYSDGLFSFSVNVNR--ATPSSTDQMLRTGRRTVSTS----VRDNAEITI 296 D P ES+ Y+DGL SFSV + A + + R G T R IT+ Sbjct: 244 DAAPPESQRKSYTDGLASFSVFLEPLSAAIKPGEGVERQGSTVAYTRGVLLQRRPVLITV 303 Query: 297 VGELPPQTAKRIAENIKFG 315 +GE+P TA+ +A++++ Sbjct: 304 LGEIPTNTARMLADSVRLR 322 >UniRef50_C7HX17 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Thiomonas intermedia K12 RepID=C7HX17_THIIN Length = 359 Score = 255 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 69/291 (23%), Positives = 113/291 (38%), Gaps = 7/291 (2%) Query: 29 ALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGN 88 LQ ++ A++SLNY FI+ + + H L ++ +DG RR +V + Sbjct: 65 QWLQTVSAAARSLNYSGVFITQRGDEISTSSLVHYVLPQGHFERIETLDGQRRIMVSLND 124 Query: 89 EISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVA 148 E+ P ++ S P L+ T + Y G R A C V ++ Sbjct: 125 EVRTSWPDYRLTLIDNQAGQASFPRLLKTTDGEVDRNYRLERGGLQRCAGFECRVSTLLP 184 Query: 149 RDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLP- 207 RD R+ Y +W +S+L ++ LD G + Q +N S+ + P Sbjct: 185 RDDLRWGYRLWSLRDSQLLVKAQTLDAAGHVINQVAFTELKINVAPRQSLVRDSLHQPPG 244 Query: 208 ---PLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLP-TMDNMPIESRLYSDGLFSFSV 263 + V W + GF V RR + + L SDGL S S+ Sbjct: 245 YAVEQMKVVPVSLQSQGWALSSQVPGFKTVGVFRRSMSVGSKPSEVLQWLLSDGLASVSI 304 Query: 264 NVNRATPSSTDQML--RTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENI 312 V A S R G + ++ +T++G +P +T +RI+E I Sbjct: 305 FVQSAADLSEPVAPEQRVGGTLALSRRIGDSWLTVMGAVPERTLRRISEAI 355 >UniRef50_Q1YS35 MucB/RseB n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YS35_9GAMM Length = 347 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 76/308 (24%), Positives = 133/308 (43%), Gaps = 25/308 (8%) Query: 18 SANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMD 77 A+ ++ L+ +M AS+ LNY+ F + + S++ HA D + ++ MD Sbjct: 24 PLFAAQMESAHDLISKMAKASRELNYQGLFTYEYRGNLTSVKLTHAVQDGQIYERMQHMD 83 Query: 78 GPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIA 137 G +R ++R + + G S L + RL +Y+F G+ RIA Sbjct: 84 GVQRNALRRTDNVDCLRTGDMLLR-------GSAYRLNDQSYARLEDFYEFHIKGQGRIA 136 Query: 138 DRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSS 197 +R +I V+ +D RY Y+V +D ES L ++ L+ G+ LE+F+ + + ++ Sbjct: 137 NRQVVMIHVLPKDKHRYGYVVAIDKESGLLLQSVLMSHTGKPLERFQFVDIQIGGSMAEL 196 Query: 198 MQTLAKANLPPLL--------SVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPI 249 ++ + S + W+ W+P GF S +DN Sbjct: 197 GFDSEASDFSDVALDQGNCIDSNSQITTSASRWSTQWMPPGFVMASH-----KLVDNQGQ 251 Query: 250 ESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVR-----DNAEITIVGELPPQT 304 ES +++DGL FSV ++ S + TV+ + I +VGE+P T Sbjct: 252 ESMMFTDGLAVFSVFIDIDKARSLPAIEANLGATVAVLTKAEINNQEYAICVVGEIPRAT 311 Query: 305 AKRIAENI 312 A +IA I Sbjct: 312 ASQIASAI 319 >UniRef50_A4A3V1 MucB/RseB family protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4A3V1_9GAMM Length = 298 Score = 253 bits (646), Expect = 7e-66, Method: Composition-based stats. Identities = 72/317 (22%), Positives = 126/317 (39%), Gaps = 29/317 (9%) Query: 8 MSLVTGSLLFSANASA-TPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLD 66 +SL L A P+ LLQ M+ +Q NY ++ + H + Sbjct: 2 LSLAAAFTLAQPQCDALAPSVARLLQAMSSNAQRGNYSGVVTLQRGNDMQIMELSHRVEN 61 Query: 67 NRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYY 126 + +L ++ G V + + PG + L I+D F L+ Y Sbjct: 62 GQASEELSRLTGQDALVERTDHPTDCMHPGHQ--LLRSAEIIDG-------SFCGLASVY 112 Query: 127 DFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVI 186 F RIA R +RV +D R+ +++ +D ++ L ++ D LEQF+ Sbjct: 113 RFRVQPGDRIAGRASLRLRVEPKDMYRFGHVLELDQDTALILKSSTFAADQSVLEQFQFA 172 Query: 187 AFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDN 246 + ++ + +A P + +W WLP+GF D+ Sbjct: 173 SISMAPRQPADAVVEYEATHPHPHE-SEHLRRGVAWDLAWLPEGFMPT----------DS 221 Query: 247 MPIESR--LYSDGLFSFSVNVNR--ATPSSTDQMLRTGRRTVSTS----VRDNAEITIVG 298 +P ES+ Y+DGL SFSV + A + + R G T R +T++G Sbjct: 222 VPKESQRKSYTDGLASFSVFLEPLGAAIKPGEGVERQGSTVAYTRGTLLDRRPVLVTVLG 281 Query: 299 ELPPQTAKRIAENIKFG 315 E+P TA+ +A++++ Sbjct: 282 EIPTNTARMLADSVRLQ 298 >UniRef50_A6GP47 Sigma E regulatory protein, MucB/RseB n=1 Tax=Limnobacter sp. MED105 RepID=A6GP47_9BURK Length = 326 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 69/332 (20%), Positives = 133/332 (40%), Gaps = 36/332 (10%) Query: 6 FAMSLVTGSLLFSAN--ASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHA 63 FA + TG LL S A A + +L+ + ++SL+Y I+ + + ++ + H Sbjct: 9 FAKHVATGVLLASVAFAAHADQSLWSLVWASHDQAKSLSYSGLLITESGKHSQTSKLLHQ 68 Query: 64 RLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLI--YTDFKR 121 L ++DG + ++ ++I P + + + P ++ Sbjct: 69 ATAGGEFEVLERLDGQPAKWIRHNDQIQCVIPDRKMILTERRHTSIAFPRVLAGADGSNS 128 Query: 122 LSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLE 181 L Y + R+A R V+++ +D RY Y +++D E+KL MR +L GE LE Sbjct: 129 LEKLYTISEMPGRRVAGRAVRVLKLTPKDDLRYEYRLYVDRENKLLMRSELYSPQGEVLE 188 Query: 182 QFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSW----------TPTWLPQGF 231 + P L+ P KA W TP+ L Sbjct: 189 NVGFKEISFE---------------PALIENPSLAKAGPGWRTSSTEVRTLTPSELTYDL 233 Query: 232 SEVSSSRRPLPTMDNMP-----IESRLYSDGLFSFSVNVNR--ATPSSTDQMLRTGRRTV 284 +++ + T+ + I +YSDGL + SV V + A+ S + G Sbjct: 234 PDIAFGFKKADTVCRVKSKDDQIHQTVYSDGLSTLSVFVQKIQASHSMPQVPMSHGAVMS 293 Query: 285 STSVRDNAEITIVGELPPQTAKRIAENIKFGA 316 + + +T++GE+P +T +++++ + Sbjct: 294 KSETQGQHLVTVLGEVPEKTLGLFLKSVRWKS 325 >UniRef50_A4BBJ2 Sigma factor algU negative regulatory protein MucB n=1 Tax=Reinekea blandensis MED297 RepID=A4BBJ2_9GAMM Length = 317 Score = 252 bits (644), Expect = 1e-65, Method: Composition-based stats. Identities = 71/307 (23%), Positives = 125/307 (40%), Gaps = 12/307 (3%) Query: 19 ANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDG 78 + ++ +L+ M A Q +Y ++ H D L Q+DG Sbjct: 13 SISAGQAMEWQMLEDMRQAVQQQSYRGEYLHRRGDHSSVYSVVHRFEDGVSQELLRQLDG 72 Query: 79 PRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIAD 138 EV+++G+E + P LN + + + ++ +Y SVG R+A Sbjct: 73 DMIEVLRQGDERICYLPPDARGALNNALPAAPFSQVEVLNLQTIADHYQASSVGSERVAG 132 Query: 139 RLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSM 198 +I + D RY +W++ ++ L ++ +L+ +G LEQFR + ++ Sbjct: 133 YQASIIELKG-DDWRYRQRLWLEKQTGLLLQSELIGPEGVVLEQFRFTRLELGVEVLDRE 191 Query: 199 QTLAKANLPPLLSVPVG-------EKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIES 251 ++ V FS WLP GF S R ++ +E Sbjct: 192 LVPTLRGESDVIRQRVQRVIPDSLPDDGFSSQVDWLPAGFERTFSQRT---VGNSGWLEQ 248 Query: 252 RLYSDGLFSFSVNVNRAT-PSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAE 310 R YSDGL + S+ V + ++ + + G T + R IT+VGE+P QT K IA+ Sbjct: 249 RTYSDGLATVSIFVEQGESDDASSGLAKMGATTAWMTFRQGVSITVVGEVPNQTVKAIAK 308 Query: 311 NIKFGAA 317 I ++ Sbjct: 309 EISLASS 315 >UniRef50_B9Z3B1 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z3B1_9NEIS Length = 319 Score = 246 bits (628), Expect = 9e-64, Method: Composition-based stats. Identities = 63/311 (20%), Positives = 131/311 (42%), Gaps = 9/311 (2%) Query: 9 SLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNR 68 ++V +L A+A+ L++ AS++ +++ VE+ Sbjct: 8 AIVCIALPALAHAADD---WQTLKKSAQASRNQVLTGTYLHQMSGVVETFHIVRGAGTEG 64 Query: 69 PLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDF 128 + +DG RE+V+ G+E++ + P + + P+L+ D ++ Y Sbjct: 65 VIELRQSLDGTPREIVRNGSELTGYGPDKKALMAAKVSAMRLFPALLPDDMAGVAESYTL 124 Query: 129 ISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAF 188 + R+A R C+ + + A+D RY + +D S LP+++ L E +EQ+ Sbjct: 125 KRLAGDRVAQRECDWLELKAKDRARYGLRLCLDRASLLPLKIMTLSPAQEPVEQYMFTEL 184 Query: 189 NVNQDISSSMQTLA-KANLP---PLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTM 244 ++ + +LP SVP + LP GF + + +R LP Sbjct: 185 DLAAPKDRNQFKPHYPLSLPIRNASTSVPPSGAGMEGVEVSGLPSGFRLIRALQRSLPGQ 244 Query: 245 DNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRT--GRRTVSTSVRDNAEITIVGELPP 302 + +Y+DGL S+ + A + + T G +++ + ++T+VG+LP Sbjct: 245 AEHAVRHLVYTDGLVMLSLFIEPAGAEPRVERVSTLYGVVAMASGSQGGMQLTLVGDLPE 304 Query: 303 QTAKRIAENIK 313 + + ++I+ Sbjct: 305 ASMMSLLKSIR 315 >UniRef50_B6BUK0 Sigma E regulatory protein, MucB/RseB, putative n=1 Tax=beta proteobacterium KB13 RepID=B6BUK0_9PROT Length = 314 Score = 245 bits (627), Expect = 1e-63, Method: Composition-based stats. Identities = 65/318 (20%), Positives = 129/318 (40%), Gaps = 18/318 (5%) Query: 9 SLVTGSLLFSANASATPASGALLQ--QMNLASQSLNYELSF-ISINKQGVESLRYRHARL 65 L+ LL S AS+ L+ + + AS LNY + + Q ++S + H Sbjct: 4 LLLFICLLISGAASSNEL---WLKISEASKASHDLNYSGIINTTDSNQDIQSTKMIHVNH 60 Query: 66 DNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPY 125 + ++ ++DG ++ + ++ + P++ ++ +L Sbjct: 61 EGEEFLKIEKIDGADNLLLMHEADAVIYDNDQNKILIKKKKDAHLFPNIFPSNLDKLKDS 120 Query: 126 YDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRV 185 Y G R+A R +++ + D RY+Y +W+D +S LP+++ ++D + + +E Sbjct: 121 YSIGDGGDFRVAGRATQMLVLSPVDENRYNYHLWLDKKSHLPLKMMVIDNNKKVVENIAF 180 Query: 186 IAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFS------WTPTWLPQGFSEVSSSRR 239 + S + + N+ ++ + E WT LP GF EVS S + Sbjct: 181 ANIEF---LKSQDISWFRPNINNDIAYSINENKNIEETVRKFWTINDLPSGFEEVSYSAK 237 Query: 240 PLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQM--LRTGRRTVSTSVRDNAEITIV 297 + N +YSDGL S+ ++ + Q+ + G + + +I V Sbjct: 238 RYAGL-NAIAHQIIYSDGLSYISIFIHPVAKNQKPQVGSSKRGSSNIHAEYKKGYQILAV 296 Query: 298 GELPPQTAKRIAENIKFG 315 G +P QT I +K Sbjct: 297 GAVPMQTLSYITNKVKLN 314 >UniRef50_B1XZN2 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XZN2_LEPCP Length = 387 Score = 242 bits (617), Expect = 2e-62, Method: Composition-based stats. Identities = 56/324 (17%), Positives = 115/324 (35%), Gaps = 34/324 (10%) Query: 24 TPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREV 83 P +++++ A+ ++ +F+ + SLR H + + ++ +DG R+V Sbjct: 60 HPDPATVIRRIQDAANRHSFSGTFVVSAGGAMTSLRITHVSDGHNQIERVETLDGQMRQV 119 Query: 84 VQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEV 143 + + + P + + P+++ T Y+ S G R+A EV Sbjct: 120 YRHNDLVHVLWPRSHAAIIEHRDLGLGYPAVLQTGSAARLDMYELKSAGIDRVAGLEAEV 179 Query: 144 IRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAK 203 +++ RD RY +W++ ++ L +R D+L GE +E + S Q ++ Sbjct: 180 LQLRPRDAHRYGQRLWLERQTGLLLRTDILGPQGELIESAGFSELKWSARSQSQTQAQSQ 239 Query: 204 ANLPPLL----------SVPVGEKAKFSWTPTWLPQGFSEVSSSRRP------------- 240 L + + E + W GF + + P Sbjct: 240 TLLAEMHRLKGYRIERPKLTHTELEREGWMLRTPVAGFRVLHTYAHPPGLPSHGAHAPDA 299 Query: 241 --------LPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQ---MLRTGRRTVSTSVR 289 + ++SDGL + S+ + R + G Sbjct: 300 VRTASGDAAAPNPQGGVLQAVFSDGLTTVSLFIERYDAGRHQREAPAASQGATQAIGQRH 359 Query: 290 DNAEITIVGELPPQTAKRIAENIK 313 + IT VG++P T ++ A I+ Sbjct: 360 GDWWITAVGDVPRATLRQFAAQIE 383 >UniRef50_Q21IH0 Negative regulator of sigma E activity-like protein n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21IH0_SACD2 Length = 361 Score = 235 bits (599), Expect = 2e-60, Method: Composition-based stats. Identities = 71/368 (19%), Positives = 145/368 (39%), Gaps = 70/368 (19%) Query: 3 QLWFAMSLVTGSLLFSANASA---TPASGALLQQMNLASQSLNYELSFISINKQGVESLR 59 ++ ++++V + S SA T + +L Q+ +++S NY F + ++ LR Sbjct: 2 KIALSLAIVLAVVGVSPAVSALDKTSSVAEILNQLGNSTKSQNYRGEFTYEHDGTIDMLR 61 Query: 60 YRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDF 119 HA +D ++ ++GP + ++ G I G L G + S ++ Sbjct: 62 VVHAVIDGVEYERIYHLNGPEKSFMREGQSIDCVTAGN--HLLRGRRLTLSSGRMVS--- 116 Query: 120 KRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGET 179 + Y F G RIA R +++++ +D RY ++ +D ++ L + + + + Sbjct: 117 --IDQNYQFHMRGEERIAGREALILQLLPKDPYRYGMVLGVDKQTGLLTKAVITEGQKKV 174 Query: 180 LEQFRVIAFNVNQDISSSMQTL----AKANLPPLLSV----------------------- 212 E+ + ++ +++ D+ K++L PL+ Sbjct: 175 WERIQFVSLSLDDDMGIEAIYPDLATGKSSLAPLVESSMVDGSVVDGSVTTEVPASPEGS 234 Query: 213 -----------------------PVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPI 249 +K P W+P GF S + Sbjct: 235 MIDNSSEASASAEPPANDADQDCRQPAASKAPLQPAWVPNGFVLSDYS------YSDEDG 288 Query: 250 ESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRR-TVSTSVRDNAE---ITIVGELPPQTA 305 Y+DGL FS+ + R T + ++R G ++ TSV + + IT+VGE+P TA Sbjct: 289 HMETYTDGLSVFSIFIGRVTDKPSQAVVRNGATVSLLTSVPSDNQFVTITVVGEVPAVTA 348 Query: 306 KRIAENIK 313 R+ ++++ Sbjct: 349 HRVTQSLR 356 >UniRef50_Q0PQN8 MucB (Fragment) n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=Q0PQN8_9GAMM Length = 232 Score = 216 bits (551), Expect = 7e-55, Method: Composition-based stats. Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 12/218 (5%) Query: 65 LDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSP 124 D + L+ ++G REV++ I+ P + +++ + L+ D +L+P Sbjct: 4 EDGQIREHLISLNGAPREVIRDKRSITCVRPESQQISIDKRPPSNKFLDLLPQDLDKLTP 63 Query: 125 YYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFR 184 +Y F ++G RIA +V+ ++ RD RY Y ++D ES LP++ DL+D G+ LEQ Sbjct: 64 HYAFRTLGTARIAGHQSKVVAIIPRDDYRYGYRFYLDQESALPLKSDLMDEQGQALEQTM 123 Query: 185 VIAF-------NVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSS 237 + N+++ T+ K++LP E + W LP GF S S Sbjct: 124 FTSLEIGVAEWNIDESNKQRGITIRKSDLPR----SEIESDRPQWHFESLPAGFVVTSRS 179 Query: 238 RRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQ 275 R P T + I+ + SDGL S S+ + Sbjct: 180 RVP-DTANGGVIDHYVLSDGLASLSIFIEAPRRGGGAG 216 >UniRef50_C5BRN0 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BRN0_TERTT Length = 328 Score = 208 bits (529), Expect = 2e-52, Method: Composition-based stats. Identities = 65/320 (20%), Positives = 125/320 (39%), Gaps = 44/320 (13%) Query: 21 ASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPR 80 ++ +L +++ + + NY+ + +E+++ H LD ++GP Sbjct: 27 VETEMSAEQVLSRLSQSMREQNYQGVVTYEHGGRLETMQATHLVLDGVEFESYSHLNGPE 86 Query: 81 REVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRL 140 R+ + G +S G + + + + R +Y F G R+A R Sbjct: 87 RQHARMGRLVSCQTLGGQLLS------GGKFAA--GSAIARFHDHYQFYVKGYDRVAGRK 138 Query: 141 CEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQT 200 V++++ +D RY + +D ES + ++ ++ LE+ + +AF +N S Sbjct: 139 VVVMQILPKDNFRYGISLGVDVESGVLLKYLVMQP-NRALERIQFVAFELNPTFSPDEIA 197 Query: 201 LAKAN------LPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLY 254 AN +A W P+W P GF VSS R T + + Y Sbjct: 198 SITANANGLQPCAEPEPQAQVPEALSEWMPSWAPPGFVHVSSKR----TEQDGIVH--TY 251 Query: 255 SDGLFSFSVNVNRATPSSTDQMLR--TGRRTVSTSVRDNAEITIV-----GE-------- 299 +DGL S+SV +N +S D+ R G + A + ++ GE Sbjct: 252 TDGLASYSVFINSEVVASDDESARIPQGA------AQRGATLVVMSLQASGEKVVHVAVV 305 Query: 300 --LPPQTAKRIAENIKFGAA 317 +P TA ++ +++ Sbjct: 306 GEVPQVTAAQVLKSVSLTKT 325 >UniRef50_B8KRG2 Negative regulator for alginate biosynthesis n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KRG2_9GAMM Length = 265 Score = 170 bits (432), Expect = 5e-41, Method: Composition-based stats. Identities = 57/301 (18%), Positives = 110/301 (36%), Gaps = 52/301 (17%) Query: 19 ANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDG 78 A+ + + + M A + Y + + Q E + R + A L +++ Sbjct: 7 ADCNLSQTLQDRINTMLGAHSRVAYTGTLLLERNQHREFVDVR--SGNGGSGANLRRLND 64 Query: 79 PRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIAD 138 PG P +++ + L+ +Y F S + Sbjct: 65 A---------------PGSPPIAYPSEHVTTV-------EACELAEHYVFASAPGDTVGG 102 Query: 139 RLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSM 198 R + RD R+ Y++ +D + LP+RV DG+ LE++ + ++ SS Sbjct: 103 RETLRLSARPRDPLRFGYVMDLDKQFGLPLRVVTATADGQMLERYEFASIEISATPDSSQ 162 Query: 199 QTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGL 258 L + + + + LP GF ++S +P+P + SDGL Sbjct: 163 SRLPQID--------------SDFALSELPPGFKLIASRTQPMPA--------MIVSDGL 200 Query: 259 FSFSVNVNRATP--SSTDQMLRTGRRTVSTS----VRDNAEITIVGELPPQTAKRIAENI 312 + +V + + L G T R +T+VGE+P TA+ +A+ + Sbjct: 201 AAATVFIESVEQIIQPGEGGLNEGSTVSYTRGVNGPRGGILVTVVGEIPMVTARLLADAV 260 Query: 313 K 313 + Sbjct: 261 R 261 >UniRef50_A0Z442 Sigma factor algU regulatory protein AlgN n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z442_9GAMM Length = 290 Score = 161 bits (408), Expect = 3e-38, Method: Composition-based stats. Identities = 66/326 (20%), Positives = 117/326 (35%), Gaps = 58/326 (17%) Query: 3 QLWFAMSLVTGSLLFSANASATPASG-----ALLQQMNLASQ-------SLNYELSFISI 50 + W LV G+ S +A+ P + + + A + S+ Y + + Sbjct: 2 KFWILALLVWGASSTSVSAADQPDQQTPPSCVMSETLTHAVRGFLAASSSVGYRGTMLVE 61 Query: 51 NKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDS 110 E H ++ L +++ P P S Sbjct: 62 YGGDRE-FIAVHVDPESGENE-LTRLNQA-------------VGPAPRPV--------AS 98 Query: 111 LPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRV 170 LP + L+ YY +A R + RD R +Y++ +D E +P+RV Sbjct: 99 LPRVSP-GPCHLARYYGLAIEPGPAVAGRATYRLSARPRDTLRLAYVMDLDAEFYVPLRV 157 Query: 171 DLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQG 230 +G+ LE++ + +P + GE + LP G Sbjct: 158 LAASPEGQILERYEFADIIFEAKV-----------VPTDDGIRDGELVASKYYLAALPPG 206 Query: 231 FSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRD 290 F+ V+ R +P++ + SDGL + SV V S R + T R Sbjct: 207 FTVVNQGR--------LPVDFLVLSDGLATVSVFVENQPNSLPSGEGFALRGSSLTYTRG 258 Query: 291 NAE---ITIVGELPPQTAKRIAENIK 313 NA+ +T++GE+P TA+ +AE ++ Sbjct: 259 NAQRQLVTVLGEVPITTARLLAEALR 284 >UniRef50_D0WVV8 Sigma-E factor regulatory protein rseB n=1 Tax=Vibrio alginolyticus 40B RepID=D0WVV8_VIBAL Length = 123 Score = 130 bits (327), Expect = 7e-29, Method: Composition-based stats. Identities = 49/122 (40%), Positives = 75/122 (61%), Gaps = 2/122 (1%) Query: 198 MQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDG 257 M L LP +L++P G+ +W W+P+GF +R + + M +ES+LYSDG Sbjct: 1 MSGLQDVQLPAVLTMPKGDIGTSNWQVGWIPEGFEPNELNRYRMAVTNQM-VESQLYSDG 59 Query: 258 LFSFSVNV-NRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFGA 316 LFSFSV V N+ S Q++R GRRT+ + V EI++VG++PP TA+RIA+++ F Sbjct: 60 LFSFSVYVANKDEHSLKGQLVRQGRRTLHSFVSGQHEISVVGDIPPTTAQRIAQSVTFNV 119 Query: 317 AQ 318 + Sbjct: 120 TK 121 >UniRef50_D1A972 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A972_THECD Length = 353 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 49/315 (15%), Positives = 95/315 (30%), Gaps = 47/315 (14%) Query: 20 NASATPASGALLQQMNLASQSLNYELSFISIN----KQGVESLRYRHARL---DNRPLAQ 72 A P + LL+ A++ YE ++ + + + H + Sbjct: 38 AAGGDPQALELLRGTAAAARRTPYEGTWTHTTLAAGGRDTSTTKVAHRVESPPSGTSMQS 97 Query: 73 LLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVG 132 + +R + LP L ++L+ Y + Sbjct: 98 ASPLS------ERREELVVT---------------AGGLPGLTPEALEQLARNYTVVRAA 136 Query: 133 RTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVN- 191 + + R V+ R G + W+D ++ + ++ +LLD G + + Sbjct: 137 DSVVCGRKARVVEAR-RPGGGTAGRFWIDAQTGILLQRELLDETGRVVSSGGFAELRITR 195 Query: 192 QDISSSMQTLAKANLPPLLSVPVGEKAKFSWT-PTWLPQGFSEVSSSRRPLPTMDNMPIE 250 I + + V K W+ P LP G + R + ++ + Sbjct: 196 PRILPQAAAPRARPWREMTAAEVDRLRKQGWSVPQTLPGGLAL--HQVRRSGSGEDGTL- 252 Query: 251 SRLYSDGLFSFSVNVNRAT-PSSTDQMLRTGR---RTVSTSVRDNAEI---------TIV 297 YSDGL + SV V R R RTV + T++ Sbjct: 253 HLGYSDGLAAVSVFVQRGRLNVRRLAGWRRATVAGRTVFRREARQRWVVWAGDGYVYTVL 312 Query: 298 GELPPQTAKRIAENI 312 + P T+ + + Sbjct: 313 TDAPQATSDAVVAAL 327 >UniRef50_D2PMC2 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PMC2_9ACTO Length = 353 Score = 101 bits (252), Expect = 3e-20, Method: Composition-based stats. Identities = 50/312 (16%), Positives = 93/312 (29%), Gaps = 51/312 (16%) Query: 22 SATPASGALLQQMNLASQSLNYELSFISI----NKQGVESLRYRHARLDNRPLAQLLQMD 77 +P++ + L++ A ++Y + I + L HA + Sbjct: 34 EDSPSAISWLERAAAAPDHVSYHGTQIITSWGPHGSSSAMLDIVHAASQGSEI------- 86 Query: 78 GPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIA 137 + + P + F P++ L Y+ + T Sbjct: 87 ----------SVVGSTSPDAKSFVQRASDGER--PTVDGGPLALLKATYELVYRCCTDTI 134 Query: 138 DRLCEVIRVVARDGTR----YSYIVWMDTESKLPMRVDLLDRDGETLEQ-FRVIAFNVN- 191 R +I D R + W+D + L ++ L DG+ L + ++ Sbjct: 135 GRAAVLI-----DALRADGTLAARFWIDKATGLLLQRQLFGADGKALVRATVFTDLKIDN 189 Query: 192 QDISSSMQTLAKANLPPLLSVPVGEKAKFSWT-PTWLPQGFSEVSSSRRPLPTMDNMPIE 250 + + + + P+ V WT T LP + Sbjct: 190 GEFLGHLPPMLPGGVEPVGLGGVEGLRSQGWTCATALPASLQLYDVHQDKAGGAL----- 244 Query: 251 SRLYSDGLFSFSVNVNRA--TPSSTDQMLRTGRRTVSTSV---------RDNAEITIVGE 299 YSDGLF+ S+ R P++ TG V T+VG+ Sbjct: 245 QFSYSDGLFNVSLFQQRGTLDPAAVAGFATTGTPGVHVRYGIPSYAVWSSGGIVYTVVGD 304 Query: 300 LPPQTAKRIAEN 311 LPP ++ + Sbjct: 305 LPPDLLAQVVDA 316 >UniRef50_Q47SM3 Putative uncharacterized protein n=1 Tax=Thermobifida fusca YX RepID=Q47SM3_THEFY Length = 357 Score = 79.9 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 45/255 (17%), Positives = 79/255 (30%), Gaps = 34/255 (13%) Query: 29 ALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGN 88 A+L++ S L+Y+ + A+L + P G Sbjct: 50 AVLRRAAETSVRLSYQGVRVVSWVDST----------GRTETARLNILHQPG-----VGT 94 Query: 89 EISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVA 148 +S E L + L + + G T+I R + Sbjct: 95 LVSPLHDTGEGTNLL--VGSTPWGRVGKDVLDVLETNFWVRTEGETQIGQRSAVGVVAQ- 151 Query: 149 RDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPP 208 RD + + W D + L +R ++ D GE + + D ++ + + P Sbjct: 152 RDNGQVAARFWTDEHTGLLLRREVYDISGEVAQTSVFESIQFGVDAAALAEETRQ---PD 208 Query: 209 LLSVPVGEKAKF---------SWT-PTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGL 258 ++S P G++ W P L GF V + + I YSDG+ Sbjct: 209 VVSRPWGDELDPQELRQLRDEGWVLPERLLWGFELVEA---RATGEGDERITHLTYSDGI 265 Query: 259 FSFSVNVNRATPSST 273 SV R + Sbjct: 266 SVISVFTQRGSLGGA 280 >UniRef50_B5YDF2 Putative uncharacterized protein n=2 Tax=Dictyoglomus RepID=B5YDF2_DICT6 Length = 330 Score = 74.5 bits (182), Expect = 5e-12, Method: Composition-based stats. Identities = 43/275 (15%), Positives = 92/275 (33%), Gaps = 24/275 (8%) Query: 2 KQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELS-----FISINKQGVE 56 K L+F + ++ L F+ +++ L S + YE F + Sbjct: 3 KSLFFLLIILFVVLTFAV------EPMEIIKNYALNSGRIPYEGIEVSILFAKPDFPRTS 56 Query: 57 SLRYRHARLDNRPLAQLLQMDGPRR---EVVQRGNEISY-FEPGLEPFTLNGDYIVDSLP 112 ++R + + + + + P ++ + Y F+P ++ Sbjct: 57 TVRV---IANGKYVVRRDYLS-PPFMLGKINIDNGKFQYDFDPKKNLVRISPSSNAFLNR 112 Query: 113 SLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDL 172 I + + G R V+ V + + +W+D + +P+R+D Sbjct: 113 DEINQRINLIRRNFYAKLEGEEVYLGRKVYVLSVTSVYTKKLVLKLWIDKDKYVPLRIDK 172 Query: 173 LDRDGETLEQFRVIAFNVNQDISSSMQTLA--KANLPPLLSVPVGEKAKFSWTPT-WLPQ 229 + DG + + + N N IS + L K + + E+ + P Sbjct: 173 YNGDGILVGRVMFVEINFNPKISDELFDLNILKDKDVKIEETRLKEEKLENIDVPLNFPL 232 Query: 230 GFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVN 264 G+S + L ++ Y+DGL S+ Sbjct: 233 GYSLIKHYT--LWEKEDRFTHYFKYTDGLNDASLF 265 >UniRef50_Q2BJ05 Putative sigma-E factor regulatory protein RseB (Fragment) n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJ05_9GAMM Length = 251 Score = 70.7 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 28/167 (16%), Positives = 62/167 (37%), Gaps = 24/167 (14%) Query: 151 GTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLL 210 R +Y + ++ S +R +E N ++ Sbjct: 103 DNRPAYTLPANSVSGDIVRAQ-FGNRNMIVE---------NGQEPEIIRLSQGIERYIDQ 152 Query: 211 SVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIES---RLYSDGLFSFSVNVNR 267 + + + +W +WLP+GF M + +++S+G SF+V V Sbjct: 153 HEHMLSEKQSNWQASWLPEGFR----------GMKREVMAHAEVQVFSNGRNSFTVCVED 202 Query: 268 ATPSS-TDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIK 313 + + + ++G + +T+VG++P A+RIA +++ Sbjct: 203 YGRQTVPEGVAQSGEMVAVGKRIGDQFVTVVGDVPLMIAERIASSVE 249 >UniRef50_D2B0P7 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B0P7_STRRD Length = 341 Score = 63.7 bits (154), Expect = 8e-09, Method: Composition-based stats. Identities = 49/306 (16%), Positives = 89/306 (29%), Gaps = 53/306 (17%) Query: 4 LWFAMSLVTGSLLFSANASATPASGA-------LLQQMNLASQSLNYELS-FISINKQGV 55 L A ++ G + S +A P LL++ +A ++ Y + +++ Sbjct: 8 LVLAAVMLLGLVAGSPAHAARPDEPEGDDTGLHLLREAAIAGRTRGYSGTQYVTTWG--- 64 Query: 56 ESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLI 115 + L R V G + +P ++ + + Sbjct: 65 -------RSGSGAVSSVLEV-----RNVPGEGLTVHT-QPSGLVQRVDPGTPAGGMSTPS 111 Query: 116 YTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDG---TRYSYIVWMDTESKLPMRVDL 172 T + L+ Y + VG R+ R ++ V DG RY W+D +R +L Sbjct: 112 ETMLEVLARNYRVVVVGEGRVCGRPARLVHAVRADGTVAARY----WLDEAGGPVLRREL 167 Query: 173 LDRDGETLEQFRVIAFNVNQ--DISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQG 230 LD G + + + ++ + +L W G Sbjct: 168 LDGHGRVVHAGAFVDLTLGPARKAAAPVSAAGGLDLGE-----TPGLLARGWRFPAALPG 222 Query: 231 FSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRA--TPSSTDQMLRTGRRTVSTSV 288 E+ ++ P YSDGL SV V Sbjct: 223 RLELFAAHDASPGYL-----YLGYSDGLSVVSVFVQPGVLDEERLQGW--------HARQ 269 Query: 289 RDNAEI 294 R+ I Sbjct: 270 RNGHTI 275 >UniRef50_C1YKW1 Putative uncharacterized protein n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YKW1_NOCDA Length = 360 Score = 61.4 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 31/163 (19%), Positives = 48/163 (29%), Gaps = 19/163 (11%) Query: 119 FKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGE 178 L Y G R+ R ++ DGT W+DT + L + + GE Sbjct: 125 LSMLGDIYAVSDAGPARLDGREARLVEARHADGTVAG-RFWVDTATGLLLGRTVYGTGGE 183 Query: 179 TLEQFRVIAFNVNQDI--------SSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQG 230 FR+ + ++ S TL + L + +W Sbjct: 184 HAIGFRLTGLELGEEDWPEEALGDSPWSDTLTRTERADLRAEEWPLPEYLAWNL------ 237 Query: 231 FSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSST 273 V + + +YSDGL SV R S Sbjct: 238 -RLVDA---RSTEHGGHRVVHAVYSDGLSQVSVFTQRGKLGSK 276 >UniRef50_O28957 Putative uncharacterized protein n=1 Tax=Archaeoglobus fulgidus RepID=O28957_ARCFU Length = 338 Score = 60.7 bits (146), Expect = 7e-08, Method: Composition-based stats. Identities = 39/215 (18%), Positives = 83/215 (38%), Gaps = 27/215 (12%) Query: 119 FKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGE 178 K + YYD +G +++ R C V+ + ++ + +W+D E P+RV+ + Sbjct: 129 IKEMLEYYDVELLGEEKVSGRDCFVLNLKPKNDRENATKMWVDKEFWFPIRVETSFGGIK 188 Query: 179 TLEQFRVIAFNVNQDISSSMQTLAKA--------NLPPLLSVPVGEKAKFSWTPTWLPQG 230 ++R ++FN D S + LP + + S+ L Sbjct: 189 MYIEYRNLSFNTGVDDSFFEFKPPEGAEVEKFDFKLPKTYESVEEAQKEASFKI--LVPS 246 Query: 231 FSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRAT----PSSTDQMLRTGRRTVST 286 ++ + T D+ YSDG + ++ + P +++ G + Sbjct: 247 YTAGYELKSVSVTNDSA---FLTYSDGEKALTI-LESTEKSEVPKDFEEVEINGEKAYYG 302 Query: 287 SV---------RDNAEITIVGELPPQTAKRIAENI 312 + ++ +++I GELP +IAE++ Sbjct: 303 EIFGASVLYIEKNGVQVSISGELPKDELIKIAESL 337 >UniRef50_C1SKR3 Putative uncharacterized protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKR3_9BACT Length = 250 Score = 58.0 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 28/191 (14%), Positives = 63/191 (32%), Gaps = 18/191 (9%) Query: 124 PYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQF 183 YY + DR + R+ +++ +D + + +R ++ D +G+ + F Sbjct: 69 DYYTVTENRGIKYFDRDVVQYDITPVKHDRFRHVLLVDQKKDVVIRKEVYDTNGKLV--F 126 Query: 184 RVIAF--NVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPL 241 + + + + + ++ F+ G+ V++ R Sbjct: 127 SFTSLDRESTEHVDDADSHPDPDSDAVHIAAASVHHDAFN--------GY-FVTADRELK 177 Query: 242 PTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGELP 301 +SDGL FS+ + T+Q + T+VG +P Sbjct: 178 DGTK-----HISFSDGLNRFSIFRKKINTEPTEQKRILYGNYIYRKKVGKELFTVVGTIP 232 Query: 302 PQTAKRIAENI 312 + + NI Sbjct: 233 FEEMDDLINNI 243 >UniRef50_B9PFG8 Predicted protein (Fragment) n=9 Tax=cellular organisms RepID=B9PFG8_POPTR Length = 283 Score = 55.7 bits (133), Expect = 2e-06, Method: Composition-based stats. Identities = 23/131 (17%), Positives = 44/131 (33%), Gaps = 31/131 (23%) Query: 127 DFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMR--VDLLDRDGETLEQFR 184 +VG +A R V V+ R G SY +W+D E+ LP++ +++ + Sbjct: 101 QIKAVGEEMVAGRETSVFEVLPRGGE--SYKIWIDKETNLPLQKESAMMNAIQY---RVT 155 Query: 185 VIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTM 244 + +I + + LPQGF E+ + Sbjct: 156 YTSIEFGDNIPGELLAYS------------------------LPQGFKEIDKNPELQVGS 191 Query: 245 DNMPIESRLYS 255 E+ ++ Sbjct: 192 VEEAAETAGFT 202 >UniRef50_UPI0001C421AC hypothetical protein BpOF4_12315 n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AC Length = 347 Score = 52.6 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 90/235 (38%), Gaps = 37/235 (15%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSL-----------NYELSFIS 49 MK++ +L T + F+A S + ++++ A ++L N++ Sbjct: 1 MKKIKAVFTLATA-IFFTAGCS-LEDTDEIIEKAVEAQENLESYYAEVSSTFNFKGE--- 55 Query: 50 INKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTL--NGDYI 107 N ES Y+ + + DG + G E ++P T+ D + Sbjct: 56 NNGNENESSTYKEWNVKPDKY-RTEMEDGYL--HISNGKESWSYDPHENTVTVFETSDEL 112 Query: 108 VDSLPS---LIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTR------YSYIV 158 + PS +I + D +G+ IA R + + +++G +Y + Sbjct: 113 AEETPSEGEIIREILTEMLDSTDVTVMGKETIAGRSTIHLALASKEGEEEDFLGEVNYDI 172 Query: 159 WMDTESKLPMRVD-LLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSV 212 W+D E+ +P+++ + D +E N DI +TL + ++P V Sbjct: 173 WVDEETYMPLKMMWISDEFSSAVE---YTHIEYNIDID---ETLFQFDIPEDAEV 221 >UniRef50_C5SBY0 Putative uncharacterized protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SBY0_CHRVI Length = 256 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 34/199 (17%), Positives = 65/199 (32%), Gaps = 29/199 (14%) Query: 76 MDGPRREVVQRGNEISYFE----PGLEPFTLNGDYIVDSLPSLIYT-----DFKRLSPYY 126 M +EV++ ++ E P + + + + P + + + Sbjct: 59 MSHQGQEVIRIHDQTRQMEWMLFPDRQTYMERSVPMGAAAPGQMPAPSAETNPCQGIEGL 118 Query: 127 DFISVGRTRIADRLCEVIRVVARDGTRYSYIV----WMDTESKLPMRVDLLDRDGETLE- 181 + G +A R + TR + W+D E LP++ + DG+++E Sbjct: 119 NCRRAGEEDVAGRRAVKWEMS---MTREGQTLTGAQWLDVERGLPLKYQM--PDGQSMEL 173 Query: 182 QFRVIAFNVNQDISSSMQTLAKANLPPLLSVP-VGEKAKFSWTPTWLPQGFSEVSSSRRP 240 + + + T N P S+ + K + P GF R Sbjct: 174 RMLGTESIAGRTVEKWEMTTTVPNESPAQSLQWYDPQLKLAVR-EEFPGGFV------RE 226 Query: 241 LPTMDNMPIESRLYS--DG 257 L + P L+S DG Sbjct: 227 LTNVQVGPQPEALFSVPDG 245 >UniRef50_A4X5A9 Putative uncharacterized protein n=3 Tax=Micromonosporaceae RepID=A4X5A9_SALTO Length = 371 Score = 51.8 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 65/230 (28%), Gaps = 43/230 (18%) Query: 54 GVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEP----GLEPFTLNGDYIVD 109 G +LR H+ D + +A + + +R+ ++ G ++ + G + Sbjct: 97 GSHTLRVWHSGPDQQRIALVDTL--GQRDFIRNGRDVWLWNSRTNTATHRVLPEGKEAAN 154 Query: 110 SLPSLIYTDFKR--------LSPYYDFISVGRTRIADRLCEVIRVVARDG--TRYSYIVW 159 P+ + + + P + +A R + + RD + + Sbjct: 155 --PAEMPATPQEAAAQALAAVDPTTEVSVGRSATVAGRDAYELVLTPRDAASLVHQVRIA 212 Query: 160 MDTESKLPMRVDLLDRDG-ETLEQFRVIAFN-VNQDISSSMQTLAK----------ANLP 207 +D + LP+R ++ G + + D P Sbjct: 213 IDATAHLPLRFEVFAAGGDRPAFELAFTQIDYARPDADQFTFNPPPDVQVTEKKGGWEHP 272 Query: 208 PLLSVPVGEK---------AKFSWTPTWLPQGFSEVSSSRRPLPTMDNMP 248 P WT T L ++ RP ++ P Sbjct: 273 EQSEQPGPTNDGGHPDLRTVGTGWT-TVLVA---KIDEVERPTAAAEDAP 318 >UniRef50_B8FZS6 Putative uncharacterized protein n=2 Tax=Desulfitobacterium hafniense RepID=B8FZS6_DESHD Length = 530 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 38/232 (16%), Positives = 71/232 (30%), Gaps = 41/232 (17%) Query: 6 FAMSLVTGSLLFSANASATPASGALLQQMNLASQSL-NYELSF----ISINKQGVESLRY 60 FA S++ LLFS + + ++ M + + L NY + + +R Sbjct: 112 FAASILVFLLLFSPW---SGSKQTIVMAMEESVKQLQNYHGVLEKVSTNEAGERQVLIR- 167 Query: 61 RHARLDNRPLA------QLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSL 114 D A L +G R P + TL LP Sbjct: 168 TEIWSDGENYATKTQDGLLTVNNGETR---------WSTNPAAKEITL--------LPVY 210 Query: 115 I-YTDFKRLSPY-----YDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPM 168 + DF Y +G IA R I + G YS +W+D + LP+ Sbjct: 211 LDPHDFDLQKEAAKALRYPHQIIGDDTIAGRAATRIEIQPPGGLPYS--LWIDQNTHLPI 268 Query: 169 RVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKF 220 ++ + + ++ N +++ + ++ + Sbjct: 269 QLQTAMQKS-LQTTYTYVSLETNTFLATDIFAYHPPQDYKVIDNNPDKVMAS 319 >UniRef50_UPI0001B543E2 hypothetical protein SSPB78_20494 n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B543E2 Length = 402 Score = 51.4 bits (122), Expect = 5e-05, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 43/139 (30%), Gaps = 16/139 (11%) Query: 52 KQGVESLRYRHARLDNRPLAQLLQM-DGPRREVVQRGNEISYFEPGL-EPFTL------- 102 G +LR D +L + D V++ G ++ + L Sbjct: 122 ASGTHTLRL---AADGPERQRLSILEDAAEYSVIRDGARAWAYDSASDKAVRLDVPGSEH 178 Query: 103 -NGDYIVDSLPSLIYTD-FKRLSPYYDFISVGRTRIADRLCEVIRVVARD--GTRYSYIV 158 P + K + + G R+A R + + + T + + Sbjct: 179 AERSPYTALTPQELADRALKAVDAHTTVRVDGTARVAGRDAYQLVIEPKQSGSTVKAVRI 238 Query: 159 WMDTESKLPMRVDLLDRDG 177 +D + P+R L RDG Sbjct: 239 LVDARTGTPLRAALTARDG 257 >UniRef50_C8S7Q8 Putative uncharacterized protein n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S7Q8_FERPL Length = 351 Score = 51.0 bits (121), Expect = 6e-05, Method: Composition-based stats. Identities = 20/96 (20%), Positives = 43/96 (44%), Gaps = 6/96 (6%) Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 + Y+ +G R+A+R C VI + +++ + S +W+D E P+R++ + + Sbjct: 143 EMLEMYEVKLLGVERVAERECYVIELKSKEMNQ-SAKMWVDKEFWYPLRIESESYGIKII 201 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGE 216 +++ + FN L + +P V E Sbjct: 202 TEYKNVEFNTGVS-----DELFEFKIPEGAKVKTEE 232 >UniRef50_Q12Z81 Putative uncharacterized protein n=1 Tax=Methanococcoides burtonii DSM 6242 RepID=Q12Z81_METBU Length = 360 Score = 50.6 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 26/141 (18%), Positives = 51/141 (36%), Gaps = 7/141 (4%) Query: 83 VVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDF-KRLSPYYDFISVGRTRIADRLC 141 VV G + ++P +D + Y D + D G +I R Sbjct: 89 VVSNGETMWTYDPQQNSVVAMEMPDIDLYQEINYGDIIAQFLNESDVSFSGMKKIEGRNT 148 Query: 142 EVIRVVARDG------TRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDIS 195 ++ + ++ + VW+D E+ +P++ D+ D DG + V VN IS Sbjct: 149 FIMNLEPKEEVPSAGPFTGNIKVWVDAETWMPLKYDMYDTDGNVIVSVEVRNLQVNTGIS 208 Query: 196 SSMQTLAKANLPPLLSVPVGE 216 + + ++ + E Sbjct: 209 DEVFEFDIPEGVEVSTLNLNE 229 >UniRef50_Q6AMB5 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AMB5_DESPS Length = 245 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 58/129 (44%), Gaps = 16/129 (12%) Query: 79 PRRE----VVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK--------RLSPYY 126 P RE +++ + + + P + +++ SL+ +D RLS Y Sbjct: 75 PARERGTKMLKLEDRLWMYSPTTDRTIQISGHMLRQ--SLMGSDLSYEDMMENPRLSEIY 132 Query: 127 DFISVGRTRIADRLCEVIRVVAR--DGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFR 184 G IA+R C ++ ++A+ D +S ++W+D E +P+R +L + G+ L++ Sbjct: 133 QAEVKGTEIIAERPCWLLSLLAKRSDVAYHSRLIWVDQELSVPLREELYAKSGKLLKKTE 192 Query: 185 VIAFNVNQD 193 F + Sbjct: 193 FKDFKQIGE 201 >UniRef50_Q8PY42 Conserved protein n=6 Tax=Methanosarcina RepID=Q8PY42_METMA Length = 223 Score = 49.9 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 15/95 (15%), Positives = 38/95 (40%), Gaps = 5/95 (5%) Query: 127 DFISVGRTRIADRLCEVIRVVARD-----GTRYSYIVWMDTESKLPMRVDLLDRDGETLE 181 + +G I R +++ ++ +W+D E+ +P+R ++ + DG+ + Sbjct: 126 EVSLLGMEEIEGRPAYLLKTSPKEEGEGIQLVDEMKLWVDKETWMPLRYEMYNSDGDLVI 185 Query: 182 QFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGE 216 + ++ +N I S L +V + Sbjct: 186 ELEILDLEINTGIPDSEFVFEVPEGATLKTVDLDS 220 >UniRef50_C0BGM9 Putative uncharacterized protein n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BGM9_9BACT Length = 212 Score = 49.5 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 64/180 (35%), Gaps = 18/180 (10%) Query: 1 MKQLWFAMSLVTGSLLFS-ANASATPASGALLQQMNL---ASQSLNYELSFISINKQGVE 56 MK + + L F +A + A+ LL +++ A ++L+++ S++ N+Q Sbjct: 1 MKNIVY---LCIAFFWFHFTSAQTSEAAVKLLDEVSENIAAFENLSFDFSYVLENRQEKI 57 Query: 57 SLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIY 116 +L+ + E + G + P E T++ + Sbjct: 58 KQETSGTVTVEGSRYKLMYL---GAEQLFDGEKTYTVVPENEEITISSPEEGEDFGINPS 114 Query: 117 TDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRD 176 YD+ + + R + ++++ D + S L + +D+L + Sbjct: 115 KLLNFYKEGYDYQWDIKQNVLGRTIQFVKLIPSDENK--------EVSYLLLGIDVLKKS 166 >UniRef50_A3CWC6 Outer membrane lipoprotein-sorting protein-like protein n=1 Tax=Methanoculleus marisnigri JR1 RepID=A3CWC6_METMJ Length = 362 Score = 48.7 bits (115), Expect = 3e-04, Method: Composition-based stats. Identities = 37/247 (14%), Positives = 78/247 (31%), Gaps = 35/247 (14%) Query: 21 ASATPASGALLQQMNLASQS-LNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGP 79 A+ P + + + A + ++ + ++R +N L L D Sbjct: 21 AADPPPADEIAARFIAAEEQATDFTATVAVTAGSENVTVRLFRKAPENYRLEFLEPADLA 80 Query: 80 RREVVQRGNEISYFEPGLE-PFTLNGDYIVDSLPSLIYTDFKRLSPYY-----------D 127 VV G ++P T+ G Y+ + Y + Y + Sbjct: 81 GTVVVSNGTRKWRYDPATRTALTVAGPYMNAAFSGPPYPGWAEGVRGYAETVAGSLSEQN 140 Query: 128 FISVGRTRIADRLCEVIRV-------VARDGTR---YSYIVWMDTESKLPMRVDLLDRDG 177 +G I R ++ V A R + + VW+D E+ L + +++ +G Sbjct: 141 ASYLGSETIGGRTAYILEVTGDSKIFEAPTRYREAVHRFRVWIDAETWLLLGLEMYGNEG 200 Query: 178 ETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAK-FSWT-----------PT 225 + + N + + + +P F W+ P+ Sbjct: 201 NLILSAEYTDPSANTGLPDDIFVFDPPAGVEVRPMPTAAITPLFLWSIQDARRYGVEMPS 260 Query: 226 WLPQGFS 232 +LP+G+ Sbjct: 261 YLPEGYV 267 >UniRef50_D1XCD9 Outer membrane lipoprotein-sorting protein-like protein n=5 Tax=Streptomyces RepID=D1XCD9_9ACTO Length = 410 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 27/167 (16%), Positives = 52/167 (31%), Gaps = 19/167 (11%) Query: 53 QGVESLRYRHARLDNRPLAQLLQMD-GPRREVVQRGNEISYFEPGLEPF---TLNGDYIV 108 G +LR D +L +D G +V G+++ ++ + G Sbjct: 124 SGTHTLRL---AADGPDRQRLSLLDKGSEYSIVHNGDDVWAYDSESDAVFHQRAEGGAQD 180 Query: 109 DSLPSLIYTDFKRLS--------PYYDFISVGRTRIADRLCEVIRVVARDGTRY--SYIV 158 + K ++ G R+A R + + + S V Sbjct: 181 GPAHKDVPGTPKEMAEKALDAAGDTTSVTVDGTARVAGRDAYQLLIKPKQSGSTVGSVRV 240 Query: 159 WMDTESKLPMRVDLL-DRDGETLEQFRVIAFNVN-QDISSSMQTLAK 203 +D E+ +P++ L G+ + + D SS T K Sbjct: 241 AVDAENGVPLKFTLAPSGGGKAVVDAGFTQVDFAKPDASSFSFTPPK 287 >UniRef50_UPI0001AED6DA hypothetical protein SalbJ_11848 n=1 Tax=Streptomyces albus J1074 RepID=UPI0001AED6DA Length = 433 Score = 48.3 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 24/141 (17%), Positives = 49/141 (34%), Gaps = 18/141 (12%) Query: 52 KQGVESLRYRHARLDNRPLAQLLQMDGPRR-EVVQRGNEISYFE-----------PGLEP 99 G +LR D +L +DG +++ G++ ++ G + Sbjct: 124 ASGTHTLRV---AGDGPDRQKLTFVDGADEYSLIRDGDQAWAYDGSTGEALHTKDAGAKG 180 Query: 100 FTLNGDYIVDSLPSLIYTD-FKRLSPYYDFISVGRTRIADRLCEVIRVVARD--GTRYSY 156 D++ D P + T G T +A R + + +D T + Sbjct: 181 DRPADDHVSDMSPKELATKALDAADETTRVTVDGTTTVAGRDAYRLALTPKDSGSTVKAV 240 Query: 157 IVWMDTESKLPMRVDLLDRDG 177 + +D E+ P++ + DG Sbjct: 241 RIAVDAETGTPLKFTVAPSDG 261 >UniRef50_Q08UT2 ABC efflux pump, inner membrane subunit, putative n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q08UT2_STIAU Length = 667 Score = 48.0 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 16/101 (15%), Positives = 44/101 (43%), Gaps = 3/101 (2%) Query: 82 EVVQRGNEISYFEPG-LEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRL 140 +++ + + + +PG +P +++ + + + + YD +G + R Sbjct: 507 QILIQARSMWFMKPGLRKPVSISPRQRLSGQAANGDIASAQFADNYDPTLLGEDTVDGRA 566 Query: 141 CEVIRVVA-RDGTRYSYIVW-MDTESKLPMRVDLLDRDGET 179 +R++A R Y +++ +D E+ L ++ + L G Sbjct: 567 VHKVRLMAKRKDVTYDQVIFYLDKENHLALKAEYLTTSGTP 607 >UniRef50_D2SA91 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SA91_9ACTO Length = 354 Score = 47.6 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 47/122 (38%), Gaps = 4/122 (3%) Query: 99 PFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARD-GTRYSYI 157 P +L D LP+ + + + G R+A R +R+V D + + Sbjct: 118 PASLALPTPPDLLPAALGRRLLSEAADEELSRAGARRVAGRDALGLRLVPADVASSVGRV 177 Query: 158 -VWMDTESKLPMRVDLLDR-DGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVG 215 VW+D S LP++V++ G R + ++ + + LL+ P Sbjct: 178 DVWVDPASGLPLQVEVFAEGAGLPALDTRFLDLDLAVPPADVVAFTPPPE-ATLLTAPDT 236 Query: 216 EK 217 E+ Sbjct: 237 EE 238 >UniRef50_Q1IW19 Putative sigma E regulatory protein, MucB/RseB n=2 Tax=Deinococcus RepID=Q1IW19_DEIGD Length = 264 Score = 47.6 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 33/229 (14%), Positives = 69/229 (30%), Gaps = 28/229 (12%) Query: 85 QRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVI 144 + E+S F P P ++ ++ ++ ++ +A R Sbjct: 46 RGTAEVSVFFP---PRSVPTRQTNAL--PVVPFRPALIAAHFTVKRSEAPSLAGRDVTRF 100 Query: 145 RVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKA 204 + + G + +W+D +P+ + DG + + V + + L Sbjct: 101 DLTPKVGQAARWTIWVDRTWNVPLAFEERMPDGTLARRAVFTS--VRAQPARVQRPL--L 156 Query: 205 NLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVN 264 +P L V P GF+ + R SDG+ ++ Sbjct: 157 PVPAGLRAAVLTAL-PGVRF---PPGFTPAAVKTRGNGLE-------ITLSDGINVLALV 205 Query: 265 VNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIK 313 + + V++ N I +VG LP + I+ Sbjct: 206 IAPRGVRAAPG--------VASRRVGNRFIWLVGNLPDAPLRSALAGIQ 246 >UniRef50_A7K0G4 Outer membrane lipoprotein-sorting protein n=28 Tax=Proteobacteria RepID=A7K0G4_VIBSE Length = 263 Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 50/171 (29%), Gaps = 33/171 (19%) Query: 52 KQGVESLRYRHARLDNRPLAQLLQM-------DG--------PRREV-----VQRGNEI- 90 V +++ +L+++ DG R+V + + + Sbjct: 45 GDSVATMKMILRNAQGESSTRLMRLQSLEVEDDGDKGLTIFDEPRDVKGTAFLNHSHTVG 104 Query: 91 ----SYFEPGLEPF-TLNGDYIVDSL--PSLIYTDFKRLS-PYYDFISVGRTRIADRLCE 142 + P L+ ++ Y D Y F + I + Sbjct: 105 ADDQWLYLPALKRVKRISSRNKSGPFMGSEFAYEDLSSFEIEKYRFNYLKDDTINGQDVF 164 Query: 143 VIRVVARDGTRYSYI---VWMDTESKLPMRVDLLDRDGETLEQFRVIAFNV 190 VI + D Y VW+D P++V+ DR G L+ + Sbjct: 165 VIEQIPTDKNS-GYTKQTVWLDKAHYRPLKVEFYDRKGSLLKTLSFSDYKQ 214 >UniRef50_Q58100 Uncharacterized protein MJ0687 n=3 Tax=Methanocaldococcus RepID=Y687_METJA Length = 335 Score = 47.2 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 32/210 (15%), Positives = 82/210 (39%), Gaps = 17/210 (8%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNL---ASQSLNYELSFISINKQGVES 57 M + +SL +F A + + + ++M A +S+ ++ + E+ Sbjct: 1 MNYKYLILSLFLIVGVFFAGCTQQMNADEIAKKMQEKYEAMKSMEADVLITTNIMGQTET 60 Query: 58 LRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYT 117 ++Y++A M+ +V G +Y+ + I L ++ Sbjct: 61 MQYKYAFEKPNKF----YMENDDVLIVCDGK--TYYMYDKKKNQYTKMEIKGELNNMFNP 114 Query: 118 DFKRLSPY----YDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLL 173 D+ + ++ +G R C V+ +++++ +++D E P+++++ Sbjct: 115 DYGKFIKSMLEKFNVSYLGEKTYDGRKCYVLELISKENPEEKMKMYVDEEYWQPLKIEM- 173 Query: 174 DRDGETLEQFRVIAFNVNQDISSSMQTLAK 203 DG T+E ++ + FNV+ + Sbjct: 174 --DGVTIE-YKNVKFNVDVPDDRFKFVPPE 200 >UniRef50_B1HWT8 Putative uncharacterized protein n=2 Tax=Bacillaceae RepID=B1HWT8_LYSSC Length = 356 Score = 47.2 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 31/233 (13%), Positives = 77/233 (33%), Gaps = 28/233 (12%) Query: 11 VTGSLLFSA---NASATPASGALL-QQMNLASQSLNYELSFISINKQGVESLRYRHARLD 66 + + FS N A+ + ++ Q + + Q L Y + + + + D Sbjct: 12 LLAVMTFSLVGCNTEASYSPQEIIEQTLQESKQPLTYYGEYTLDMGELGGKAQVKEWVKD 71 Query: 67 NRPLAQLLQMDGPRREVVQRGNEISYF-----------EPGLEPFTLNGDYIVDSLPSLI 115 ++ +G V+ +E+ + P E L + Sbjct: 72 KYRRIEMKGDNGEHVITVKTDSELISYDVTEHTAFKMAYPQGELDGLRSPR------EEV 125 Query: 116 YTDFKRLSPYYDFISVGRTRIADRLCEVIRVVA-RDGTRYS-YIVWMDTESKLPMRVDLL 173 F + ++ G ++A R I + + + W+D ++ L +++ Sbjct: 126 QLVFNLVKDTHEIKIAGEEKVAGRDTYKIVAKTTKTESLFGDIEAWIDKKTWLMLKMKSD 185 Query: 174 DRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTW 226 + + + ++ NV++ I L +LP +++ S +W Sbjct: 186 NAGNQIITEYS--KINVDEKIDDQQFIL---DLPEDVTIQEISGEDTSALISW 233 >UniRef50_Q023A5 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q023A5_SOLUE Length = 236 Score = 46.4 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 2/51 (3%) Query: 123 SPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYI--VWMDTESKLPMRVD 171 + Y +G +A R C V+ + R +RY + VW+D ES P+R+D Sbjct: 121 AANYRVQLLGTELVAGRRCYVLGLTPRSKSRYLIVGKVWVDAESFGPVRID 171 >UniRef50_Q1K3Y0 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K3Y0_DESAC Length = 271 Score = 45.6 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 16/77 (20%), Positives = 31/77 (40%), Gaps = 3/77 (3%) Query: 128 FISVGRTRIADRLCEVIRVVARDGTRYSYI---VWMDTESKLPMRVDLLDRDGETLEQFR 184 + IA R C + + T Y W+D E+ LP++ ++ + + + Sbjct: 160 YRLDAEQMIAGRNCYQLISTPKPDTETQYRKIASWIDRETFLPLKTIFWNKKSQPFKTYT 219 Query: 185 VIAFNVNQDISSSMQTL 201 V F + I++ M L Sbjct: 220 VQTFKIVDGIATEMDVL 236 >UniRef50_C0GKP3 Putative uncharacterized protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GKP3_9FIRM Length = 217 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 35/222 (15%), Positives = 73/222 (32%), Gaps = 38/222 (17%) Query: 3 QLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLN---YELSFISIN---KQGVE 56 ++ + V +L+F A + P L + ++ + + + + +E Sbjct: 2 KIKLPVLTVILALIFLAAGCSQPPEEGTLDYVLENVRNNSIDTFTGVMEISSEMDGKTME 61 Query: 57 SL--------RYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIV 108 ++ R R +D Q+ DG ++ + +SY + Sbjct: 62 TITYIWYAGGRSRTESVDEEQHKQITIFDGTDSWIISDYD-LSYVT------VIREPSGF 114 Query: 109 DSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIR-VVARDGTRYSYIVWMDTESKLP 167 D DF Y+ G + R + V+ +DG + W+D E+ LP Sbjct: 115 DMF------DFTNFGEPYELSYRGTETVEGRRAHGVEGVLEKDGFKEEVTWWVDAETWLP 168 Query: 168 M----RVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKAN 205 R DL G+ + +N+++ S+ Sbjct: 169 FISENRTDLYT--GKLI----FRDIRINKEVDESLLEYTPPE 204 >UniRef50_B8D1B5 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1B5_HALOH Length = 248 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 24/108 (22%), Positives = 43/108 (39%), Gaps = 9/108 (8%) Query: 82 EVVQRGNEISYFEPGLEPFT------LNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTR 135 + ++R + + F P E L + L + +L+ YDF + Sbjct: 85 KFLKRDDNLFMFFPDAEDIVKISGHMLEQGIMGSDLSYKDIMESDKLTELYDFKILREEE 144 Query: 136 IADRLCEVIRVVARDGTR---YSYIVWMDTESKLPMRVDLLDRDGETL 180 R C V+ +AR+G Y + W+D E + ++ +L R G L Sbjct: 145 YQGRPCYVMEGIAREGAEVSYYRRVAWIDKERFIGLKEELYARSGRLL 192 >UniRef50_C6MFK6 Putative uncharacterized protein n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MFK6_9PROT Length = 212 Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 20/102 (19%), Positives = 37/102 (36%), Gaps = 4/102 (3%) Query: 103 NGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVA-RD---GTRYSYIV 158 +G I S +Y + L + +G+ I + V A RD + + Sbjct: 110 SGQRIDHSDLGALYKNIMTLQDHGRTTVIGQESIVGETVLHLNVEAERDFSVNDIAQFQL 169 Query: 159 WMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQT 200 W+D + P++V DG +EQ + + +N Sbjct: 170 WLDIVTGFPLKVISYKADGSWIEQVEMSDYRINPVFPPDFFD 211 >UniRef50_B1ZYB9 Putative uncharacterized protein n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZYB9_OPITP Length = 300 Score = 44.9 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 32/139 (23%), Positives = 55/139 (39%), Gaps = 13/139 (9%) Query: 78 GPRREVVQRGNE--ISYFEPGLEPFTLNGDYIVDSL-PSLIYTDFKRLSPY-Y--DFISV 131 G +R ++Q G E + ++PG P L + ++D L P T F P+ Y F Sbjct: 115 GEQRLLIQNGRESGVWRWQPGRGPEQLGIETLLDPLIPDTELTAFDLQMPFVYWEQFTYE 174 Query: 132 GRTRIADRLCEVIRVVARDGT--RY----SYIVWMDTESKLPMRVDLLDRDGETLEQFRV 185 G R R VI + R+ V +D++ ++ +LLDR G L+ + Sbjct: 175 GLRRFRGRPAHVIELQPPPEFAARHPDIGGVRVHLDSQFNALVQTELLDRRGAVLKTLSL 234 Query: 186 IAF-NVNQDISSSMQTLAK 203 + V+ + Sbjct: 235 VDLKKVDDQWIPKTLDIRD 253 >UniRef50_Q8PY40 Conserved protein n=1 Tax=Methanosarcina mazei RepID=Q8PY40_METMA Length = 367 Score = 44.5 bits (104), Expect = 0.004, Method: Composition-based stats. Identities = 34/241 (14%), Positives = 71/241 (29%), Gaps = 40/241 (16%) Query: 8 MSLVTGSLLFSANASATPASGALLQQMNL----------ASQSLNYELSFISINKQGVES 57 + LV +L S ++ ++ +M +Y + N+ Sbjct: 2 LVLVILALFTSGCTERELSAEEIVSRMMEKQGSIQDYSYTMHMTSYIGKQVVENEFN-SI 60 Query: 58 LRYRHARLD-----NRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLP 112 + H + + L+ DG R + PG I D+ P Sbjct: 61 YKKPHMMKNFIKEPGKEEETLVLSDGEFR---------WTYIPGTNTVM--KTKIPDT-P 108 Query: 113 SLIYTDFKRLSPY----YDFISVGRTRIADRL-CEVIRVVARDGTR----YSYIVWMDTE 163 L D+ L + +G + R ++ + YS VW+D E Sbjct: 109 ELNENDYLLLVKIALNDTNLSMLGTEEVEGRKKAYLLEATPKKTGEQVPEYSMKVWIDKE 168 Query: 164 SKLPMRVDLLD---RDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKF 220 + + + ++ D + + + + VN I S + ++ E + Sbjct: 169 TWMFLGYEMYDSSESNKTLISKVEIRDLKVNTGIPDSEFVFKIPEGATVQTIETIETVEH 228 Query: 221 S 221 Sbjct: 229 G 229 >UniRef50_Q8PYI1 Conserved protein n=2 Tax=Methanosarcina RepID=Q8PYI1_METMA Length = 259 Score = 44.1 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 74/230 (32%), Gaps = 11/230 (4%) Query: 3 QLWFAMSLVTGSLLFSANASATPASGALLQQM---NLASQSLNYELSFISINKQGVESLR 59 + ++ V L S ++ ++ QM +++ +Y + S + Sbjct: 8 KSILMLAFVAIILFASGCTEENLSAEEIVTQMLDKQNSTEDYSYTMYMTSYAGGKTAEIE 67 Query: 60 YRHARLDNRPLAQLLQMDGPRREVV--QRGNEISYFEPG-LEPFTLNGDYIVDSLPSLIY 116 Y+ ++ G + +++ G + P E + I + S Sbjct: 68 YKTMFKKPNMSKDIITEPGKKDQIIIVSDGEFAWSYIPATNEVIKMELPDIPEPTKSDCI 127 Query: 117 TDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGT-RYSY----IVWMDTESKLPMRVD 171 + + I R ++ +++ Y +W+D E+ +P+R + Sbjct: 128 NAIGEFLNSTNVTLLRVENIDGRTAYLLETSSKEKDGAYPMINRTKIWVDKETWMPLRYE 187 Query: 172 LLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFS 221 + D DG + + VN I S + + ++ + E Sbjct: 188 MYDGDGNLTAKIEIRDLKVNSGIPDSEFKFEIPDGAEVKTLDIKEIKSSE 237 >UniRef50_Q2JI91 Putative uncharacterized protein n=2 Tax=Synechococcus RepID=Q2JI91_SYNJB Length = 411 Score = 43.7 bits (102), Expect = 0.009, Method: Composition-based stats. Identities = 31/177 (17%), Positives = 63/177 (35%), Gaps = 35/177 (19%) Query: 16 LFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLR-------YRHARLDN- 67 S+ AS A L++ N A + L + + VE + + R + Sbjct: 45 APSSLASPKQDPQAWLERYNAALEQLPPLPNLQYRQQVRVEGSQTFTATLDVLYRRDGSW 104 Query: 68 ----RPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSL---IYTDFK 120 ++ +D + EVV + + + + +++ LPS+ + D Sbjct: 105 QAWVAEGDRIRLLDSRQLEVVNQSDLL-------QLYSVYVSRPEALLPSVSFYLKADPS 157 Query: 121 RLSPYYDFISVGRTRI--ADRLCEVIRVVA--RDGTRYSYIVWMDTESKLPMRVDLL 173 R + + R+ A + +R+ R +W+D +S LP +V L Sbjct: 158 R------YRVLSSERVDLAGSPVQHLRLEPIQEGQLR---ELWLDPQSGLPRQVLLF 205 >UniRef50_Q8TQL2 Putative uncharacterized protein n=1 Tax=Methanosarcina acetivorans RepID=Q8TQL2_METAC Length = 220 Score = 43.3 bits (101), Expect = 0.012, Method: Composition-based stats. Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 5/52 (9%) Query: 126 YDFISVGRTRIADRLCEVIRVVAR-----DGTRYSYIVWMDTESKLPMRVDL 172 YD G + R ++ + D +W+D E+ +P++ ++ Sbjct: 123 YDVSVPGSDTVDGRTAYLLETKPKEGKDEDNLLDGIRIWVDEETWIPLKYEI 174 >UniRef50_Q0R4F9 Outer membrane lipoprotein-sorting protein-like protein n=3 Tax=Pseudomonas RepID=Q0R4F9_PSEFL Length = 278 Score = 43.3 bits (101), Expect = 0.013, Method: Composition-based stats. Identities = 26/129 (20%), Positives = 43/129 (33%), Gaps = 10/129 (7%) Query: 80 RREVVQRGNEISYFEP-GLEPFTLNGDYIVDSL--PSLIYTDFKRLS-PYYDFISVGRTR 135 E + + + P + ++ S Y D ++ Y +G + Sbjct: 97 PHETLGLEDSQWMYLPVSRQTRRISTTDKRGSFMGSEYSYADLDKIRVKDYSQTLLGEEQ 156 Query: 136 IADRLCEVIRVVARDG---TRYSY---IVWMDTESKLPMRVDLLDRDGETLEQFRVIAFN 189 I R C VI + Y VW+D ++ L MR D D G ++Q R Sbjct: 157 IKGRDCYVIEREPASPEVLAKTGYNKLKVWIDKQNFLVMRQDFFDVKGVLIKQMRTQKVE 216 Query: 190 VNQDISSSM 198 I S + Sbjct: 217 TIDGIDSIV 225 >UniRef50_B6WQE2 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WQE2_9DELT Length = 269 Score = 42.9 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 38/212 (17%), Positives = 77/212 (36%), Gaps = 32/212 (15%) Query: 7 AMSLVTGSLLFSANASATPASGA-------LLQQMNLA-SQSLNY-ELSFISINKQGVES 57 +L +LL + +A A PA L +M+ + +Y E V + Sbjct: 8 LFALFFCTLLLAGSAQAAPAITDPVKAGYDLAVRMDQVDTSQDSYSEAVMSINRGGKVLT 67 Query: 58 LRYR----HARLDNRPLAQLLQMD------GPRREV-----VQRGNEISYFEPGLEPFT- 101 ++ H D + L+ D G + V +++ +++ + P Sbjct: 68 RSFKTYSKHFGKDGKDEYSLIVFDRPADVNGTKYLVWSYRGLEQDDDMWVYLPAESLVRR 127 Query: 102 LNGDYIVDSLPS--LIYTDFKRLSPY--YDFISVGRTRIADRLCEVIRVVARDG--TRYS 155 ++G S L D + L YD++ G + C ++ + G T+YS Sbjct: 128 ISGSSKFASFMRSDLSNEDIQNLDDVDEYDYLLQGEENVDGIDCYILERTPKKGKETQYS 187 Query: 156 YIV-WMDTESKLPMRVDLLDRDGETLEQFRVI 186 V W+ ++ L +R D D+ +++ Sbjct: 188 RQVQWVRKDTLLRLRADYYDKKDRLVKKLFFS 219 >UniRef50_B2JPR8 Squalene-associated FAD-dependent desaturase n=6 Tax=Burkholderia RepID=B2JPR8_BURP8 Length = 425 Score = 42.6 bits (99), Expect = 0.018, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 65/210 (30%), Gaps = 41/210 (19%) Query: 65 LDNRPLAQLLQMDGPRR-EVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK--- 120 D R +A L +++ R E+ + P + + G +++ F Sbjct: 235 DDGRRVASL-RLNAEERIEIGANEAVVLAVTPDVAQSLVPGMQAPRRFSAIVTAHFAVEP 293 Query: 121 -----------RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMD--TESKL- 166 + + S GR + + + RD + +W D + L Sbjct: 294 PLGHPPLMGLVNATANWLVASDGRLSVTVYDAARLTDMPRDDL--ARKLWADVAQVTGLS 351 Query: 167 ---PMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWT 223 P++ L+ V + + Q + P + WT Sbjct: 352 ADLPLKWQLI----------------VEPRATFAAQPDEEMRRPATRTRWNNLMLAGDWT 395 Query: 224 PTWLPQGFS-EVSSSRRPLPTMDNMPIESR 252 T LP G + S ++ T+ N P+E R Sbjct: 396 ATGLPPGIEGAIRSGQKAADTLLNEPMERR 425 >UniRef50_A1ZTN2 Putative uncharacterized protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZTN2_9SPHI Length = 254 Score = 41.8 bits (97), Expect = 0.030, Method: Composition-based stats. Identities = 26/167 (15%), Positives = 61/167 (36%), Gaps = 13/167 (7%) Query: 83 VVQRGNEISYFEPG------LEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRI 136 ++RG E+ + P + P +N ++ + + Y +G + Sbjct: 89 YLKRGKEMWNWLPKVGRVVKMPPSMMNQSWMGSDFTNDDLVRQSSIVVDYTHKILGSETL 148 Query: 137 ADRLCEVIRVVARDGTR--YSYI-VWMDTESKLPMRVDLLDRDGETLEQFRVIAF-NVNQ 192 R C + + + + + +W+ + L ++ + D DG + R N+ Sbjct: 149 EGRDCYKVLLTPKPNAPVVWGKVEMWISKKDYLQLQSKMYDEDGYLVNTMRGSKIKNLGG 208 Query: 193 DISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRR 239 + S + A+ P +V ++ F+ + GF V + +R Sbjct: 209 RVLPSYMEMIPADKPNQKTVLEYKQMVFN---KPISDGFFSVQNMKR 252 >UniRef50_Q73L56 Putative uncharacterized protein n=2 Tax=Treponema RepID=Q73L56_TREDE Length = 261 Score = 41.8 bits (97), Expect = 0.030, Method: Composition-based stats. Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 4/99 (4%) Query: 86 RGNEISYFEPGLEPFTLNGDYIVDSLPS--LIYTDFKRLS-PYYDFISVGRTRIADRLCE 142 + Y + ++G D Y D Y +G +I + C Sbjct: 103 SDDRWLYMPALKKAKRISGSSSQDYFMGTDFTYDDMSGRKVDDYKHSLLGEEKIDSKDCW 162 Query: 143 VIRVVARDGTRYS-YIVWMDTESKLPMRVDLLDRDGETL 180 I + + YS Y+ W+D ES L ++ + D G L Sbjct: 163 KIESIPVKKSMYSKYVSWIDKESLLNIKAEFYDEQGSIL 201 >UniRef50_Q89G62 Bll6483 protein n=8 Tax=Proteobacteria RepID=Q89G62_BRAJA Length = 257 Score = 41.4 bits (96), Expect = 0.042, Method: Composition-based stats. Identities = 27/141 (19%), Positives = 42/141 (29%), Gaps = 17/141 (12%) Query: 190 VNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWL----------PQGFSEVSSSRR 239 + Q+ + S A + P+ W L G+ + Sbjct: 117 LAQEAAYSYGVYAPDRVRPVEIRASDSAELTQWVSNRLKQPVKVPDLSVSGYRLMGG--- 173 Query: 240 PLPTMDNMPIESRLY----SDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEIT 295 L + P +Y D L + ++R + TG T Sbjct: 174 RLVATSHGPAAMFMYDDDRGDRLVVLTRPMSRGGQDTPMLPQSTGDVAGFAWADGGMGYT 233 Query: 296 IVGELPPQTAKRIAENIKFGA 316 +VGELP T K IA I+ A Sbjct: 234 LVGELPTDTLKPIANEIRKQA 254 >UniRef50_B4CUK7 Putative uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUK7_9BACT Length = 264 Score = 41.4 bits (96), Expect = 0.044, Method: Composition-based stats. Identities = 35/201 (17%), Positives = 63/201 (31%), Gaps = 26/201 (12%) Query: 8 MSLVTGSLLFSANAS--ATPASGALLQQMNLASQS--LNYELSFISINKQGVESLR--YR 61 SLV + A A+ A P S + L A + +Y + I E+L+ + Sbjct: 9 ASLVAMVMAVPALAAENAAPVSASQLASQLSALRQDGSSYVRLRMEIKGGKAETLQLQIK 68 Query: 62 HARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNG-------DYIVDSLPSL 114 + +E ++G + + I D L Sbjct: 69 QRLTRGSSEVMYQVL--FPKE--RKGESVLLKRSAKGGASGASFTPPNSMRQISDLKEPL 124 Query: 115 IYTDF---KRLSPYY---DFISVGRTRIADRLCEVIRVVARDGTRYSY---IVWMDTESK 165 +D + +Y VG + C+V+ G R SY W+D Sbjct: 125 FGSDLSYEDVIDNFYGWPQQAIVGTEEVEGVNCQVLESKPGKGDRSSYGSVKSWVDMRRM 184 Query: 166 LPMRVDLLDRDGETLEQFRVI 186 +P+RV+ G+ + + Sbjct: 185 VPLRVEKYSESGKLVHRIDTT 205 >UniRef50_Q1IS82 Putative uncharacterized protein n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IS82_ACIBL Length = 250 Score = 41.0 bits (95), Expect = 0.056, Method: Composition-based stats. Identities = 26/181 (14%), Positives = 54/181 (29%), Gaps = 40/181 (22%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVES--- 57 M + L+T + +A P ++ +M A N++ ++ + + Sbjct: 4 MIRASILTMLLTAVGMAQTSA---PDVNTVVSRMQTAMGGRNHDRAYSVTREYRLVPEDP 60 Query: 58 ---LRYRHARL---DNRPLAQLLQMDGPRREVVQR--GNEISYFEPGLEPFTLNGDYIVD 109 R + ++ + G VV++ +E Sbjct: 61 NKASRVVAEVNALPSGKKDYRITEGGGQAENVVRKVLDHETEVTNQNNGAVLT------- 113 Query: 110 SLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVA----RDGTRYSYIVWMDTESK 165 + YDF+ G I C V+++ +D R W+D +S Sbjct: 114 -------------ADNYDFVLAGTEAIDGHRCYVLQLKPKRDGKDILR--GRAWVDADSY 158 Query: 166 L 166 L Sbjct: 159 L 159 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AFY0 Sigma-E factor regulatory protein rseB n=161 Tax... 361 1e-98 UniRef50_A6SXQ7 Sigma-E factor negative regulatory protein RseB ... 342 1e-92 UniRef50_C0N4S1 MucB/RseB family n=1 Tax=Methylophaga thiooxidan... 327 4e-88 UniRef50_C5V4B6 Sigma E regulatory protein, MucB/RseB n=1 Tax=Ga... 326 5e-88 UniRef50_Q7MHN3 Negative regulator of sigma E activity n=68 Tax=... 324 2e-87 UniRef50_Q7N1X1 Sigma-E factor regulatory protein RseB n=8 Tax=E... 324 3e-87 UniRef50_C6X6N7 Sigma E regulatory protein, MucB/RseB n=2 Tax=Me... 321 2e-86 UniRef50_B5JX06 MucB/RseB n=1 Tax=gamma proteobacterium HTCC5015... 318 1e-85 UniRef50_C6P3S1 Sigma E regulatory protein, MucB/RseB n=1 Tax=Si... 318 2e-85 UniRef50_Q1H2L7 Sigma E regulatory protein, MucB/RseB n=1 Tax=Me... 318 2e-85 UniRef50_Q3J8C9 Sigma E regulatory protein, MucB/RseB n=2 Tax=Ni... 316 7e-85 UniRef50_A6VKY3 Sigma E regulatory protein, MucB/RseB n=1 Tax=Ac... 312 1e-83 UniRef50_Q2SXT9 Sigma factor algU regulatory protein MucB n=56 T... 311 2e-83 UniRef50_A4BRZ0 MucB/RseB n=1 Tax=Nitrococcus mobilis Nb-231 Rep... 310 4e-83 UniRef50_C4ZKS3 Sigma E regulatory protein, MucB/RseB n=3 Tax=Rh... 308 1e-82 UniRef50_Q3IDL6 Putative anti sigma E (Sigma 24) factor, negativ... 308 2e-82 UniRef50_Q2Y876 Sigma E regulatory protein, MucB/RseB n=2 Tax=Ni... 307 3e-82 UniRef50_Q2SL38 Sigma factor algU negative regulatory protein Mu... 307 4e-82 UniRef50_Q126J7 Putative sigma E regulatory protein, MucB/RseB n... 305 1e-81 UniRef50_B8GPK4 Sigma E regulatory protein, MucB/RseB n=1 Tax=Th... 304 2e-81 UniRef50_Q65QC3 RseB protein n=2 Tax=Pasteurellaceae RepID=Q65QC... 302 1e-80 UniRef50_Q47WP0 Sigma-E factor regulatory protein RseB n=1 Tax=C... 300 3e-80 UniRef50_C4K3Z0 Anti sigma E (Sigma 24) factor, negative regulat... 298 2e-79 UniRef50_P44792 Sigma-E factor regulatory protein rseB homolog n... 296 6e-79 UniRef50_B4F051 Anti sigma E (Sigma 24) factor, negative regulat... 293 8e-78 UniRef50_B4RVL6 Putative anti sigma E (Sigma 24) factor, negativ... 292 1e-77 UniRef50_UPI0001AEB8D1 putative anti sigma E (sigma 24) factor, ... 291 2e-77 UniRef50_Q15R29 Sigma E regulatory protein, MucB/RseB n=1 Tax=Ps... 291 2e-77 UniRef50_A7JWL1 Sigma E regulator RseB n=3 Tax=Pasteurellaceae R... 290 4e-77 UniRef50_B8F3K5 Periplasmic negative regulator of sigmaE n=2 Tax... 290 5e-77 UniRef50_Q0A8Z7 Sigma E regulatory protein, MucB/RseB n=1 Tax=Al... 289 1e-76 UniRef50_Q3SH43 Putative Sigma E regulatory protein, MucB/RseB n... 287 4e-76 UniRef50_C5SBU2 Sigma E regulatory protein, MucB/RseB n=1 Tax=Al... 286 1e-75 UniRef50_A3Y8F0 MucB/RseB n=1 Tax=Marinomonas sp. MED121 RepID=A... 284 2e-75 UniRef50_Q2KW13 Sigma-E factor regulatory protein n=5 Tax=Bordet... 283 5e-75 UniRef50_C5CSF0 Putative sigma E regulatory protein, MucB/RseB n... 283 7e-75 UniRef50_A1SR26 Sigma E regulatory protein, MucB/RseB n=2 Tax=Ps... 283 7e-75 UniRef50_A0YCK6 Sigma factor algU negative regulatory protein Mu... 282 1e-74 UniRef50_Q0K8M7 Negative regulator of sigma24 activity n=10 Tax=... 282 2e-74 UniRef50_C1DQR7 Sigma factor algU negative regulatory protein Mu... 281 2e-74 UniRef50_Q608M1 Putative sigma-E factor regulatory protein n=1 T... 281 2e-74 UniRef50_A0KGE8 Sigma-E factor regulatory protein RseB n=2 Tax=A... 281 3e-74 UniRef50_C5S2D4 Periplasmic negative regulator of sigmaE n=2 Tax... 281 3e-74 UniRef50_B9ZJG1 Sigma E regulatory protein, MucB/RseB n=1 Tax=Th... 280 5e-74 UniRef50_Q0VP13 Negative regulator for alginate biosynthesis n=2... 280 5e-74 UniRef50_A1WT21 Sigma E regulatory protein, MucB/RseB n=1 Tax=Ha... 278 1e-73 UniRef50_A2SDG7 Sigma E regulatory protein, MucB/RseB n=1 Tax=Me... 278 1e-73 UniRef50_Q07YZ2 Sigma E regulatory protein, MucB/RseB n=22 Tax=S... 277 4e-73 UniRef50_P38108 Sigma factor algU regulatory protein mucB n=27 T... 276 9e-73 UniRef50_UPI0000E11523 putative anti sigma E (sigma 24) factor, ... 276 1e-72 UniRef50_Q5R102 Negative regulator of sigma E activity n=1 Tax=I... 275 1e-72 UniRef50_B3PJ99 Sigma factor algU regulatory protein MucB n=1 Ta... 273 5e-72 UniRef50_A1U2X0 Sigma E regulatory protein, MucB/RseB n=3 Tax=Ma... 271 2e-71 UniRef50_A6VUA2 Sigma E regulatory protein, MucB/RseB n=1 Tax=Ma... 271 3e-71 UniRef50_A1WMW7 Sigma E regulatory protein, MucB/RseB n=5 Tax=Co... 271 3e-71 UniRef50_A6FDN5 Sigma-E factor regulatory protein RseB n=1 Tax=M... 271 3e-71 UniRef50_A3WPR5 Negative regulator of sigma E activity n=1 Tax=I... 270 4e-71 UniRef50_UPI0000E87AE1 Putative Sigma E regulatory protein, MucB... 270 4e-71 UniRef50_Q7NWD0 Negative regulator for alginate biosynthesis Muc... 270 5e-71 UniRef50_C4LBZ4 Sigma E regulatory protein, MucB/RseB n=1 Tax=To... 268 2e-70 UniRef50_B7RX56 MucB/RseB family protein n=1 Tax=marine gamma pr... 266 7e-70 UniRef50_B8KFV0 Putative negative regulator for alginate biosynt... 263 7e-69 UniRef50_Q1N1C1 Sigma factor algU negative regulatory protein Mu... 262 1e-68 UniRef50_Q6SFI4 MucB/RseB family protein n=1 Tax=uncultured mari... 261 2e-68 UniRef50_A1TLE5 Putative sigma E regulatory protein, MucB/RseB n... 259 7e-68 UniRef50_A4BBJ2 Sigma factor algU negative regulatory protein Mu... 258 2e-67 UniRef50_B9Z3B1 Putative sigma E regulatory protein, MucB/RseB n... 258 2e-67 UniRef50_C7HX17 Putative sigma E regulatory protein, MucB/RseB n... 257 4e-67 UniRef50_A4A3V1 MucB/RseB family protein n=1 Tax=Congregibacter ... 256 1e-66 UniRef50_B1XZN2 Putative sigma E regulatory protein, MucB/RseB n... 255 1e-66 UniRef50_Q1YS35 MucB/RseB n=1 Tax=gamma proteobacterium HTCC2207... 254 3e-66 UniRef50_A6GP47 Sigma E regulatory protein, MucB/RseB n=1 Tax=Li... 252 9e-66 UniRef50_B6BUK0 Sigma E regulatory protein, MucB/RseB, putative ... 247 5e-64 UniRef50_Q21IH0 Negative regulator of sigma E activity-like prot... 227 4e-58 UniRef50_C5BRN0 Putative sigma E regulatory protein, MucB/RseB n... 219 2e-55 UniRef50_Q0PQN8 MucB (Fragment) n=1 Tax=Endoriftia persephone 'H... 209 9e-53 UniRef50_B8KRG2 Negative regulator for alginate biosynthesis n=1... 191 3e-47 UniRef50_A0Z442 Sigma factor algU regulatory protein AlgN n=1 Ta... 180 7e-44 UniRef50_D2PMC2 Putative sigma E regulatory protein, MucB/RseB n... 155 2e-36 UniRef50_D1A972 Putative sigma E regulatory protein, MucB/RseB n... 150 9e-35 UniRef50_B5YDF2 Putative uncharacterized protein n=2 Tax=Dictyog... 137 4e-31 UniRef50_O28957 Putative uncharacterized protein n=1 Tax=Archaeo... 127 8e-28 UniRef50_Q47SM3 Putative uncharacterized protein n=1 Tax=Thermob... 125 3e-27 UniRef50_D0WVV8 Sigma-E factor regulatory protein rseB n=1 Tax=V... 123 6e-27 UniRef50_D2B0P7 Putative sigma E regulatory protein, MucB/RseB n... 122 2e-26 UniRef50_Q58100 Uncharacterized protein MJ0687 n=3 Tax=Methanoca... 114 5e-24 UniRef50_C1SKR3 Putative uncharacterized protein n=1 Tax=Denitro... 112 2e-23 UniRef50_A3CWC6 Outer membrane lipoprotein-sorting protein-like ... 110 5e-23 UniRef50_B1HWT8 Putative uncharacterized protein n=2 Tax=Bacilla... 106 8e-22 UniRef50_Q2BJ05 Putative sigma-E factor regulatory protein RseB ... 102 2e-20 UniRef50_C1YKW1 Putative uncharacterized protein n=1 Tax=Nocardi... 102 2e-20 UniRef50_UPI0001C421AC hypothetical protein BpOF4_12315 n=1 Tax=... 101 4e-20 UniRef50_Q1IW19 Putative sigma E regulatory protein, MucB/RseB n... 100 6e-20 UniRef50_Q8PY42 Conserved protein n=6 Tax=Methanosarcina RepID=Q... 100 8e-20 UniRef50_B8FZS6 Putative uncharacterized protein n=2 Tax=Desulfi... 97 1e-18 UniRef50_C8S7Q8 Putative uncharacterized protein n=1 Tax=Ferrogl... 95 2e-18 UniRef50_C0BGM9 Putative uncharacterized protein n=1 Tax=Flavoba... 95 2e-18 UniRef50_Q12Z81 Putative uncharacterized protein n=1 Tax=Methano... 95 4e-18 UniRef50_A4X5A9 Putative uncharacterized protein n=3 Tax=Micromo... 88 3e-16 UniRef50_D1XCD9 Outer membrane lipoprotein-sorting protein-like ... 88 3e-16 UniRef50_UPI0001B543E2 hypothetical protein SSPB78_20494 n=1 Tax... 88 4e-16 UniRef50_UPI0001AED6DA hypothetical protein SalbJ_11848 n=1 Tax=... 85 4e-15 UniRef50_B9PFG8 Predicted protein (Fragment) n=9 Tax=cellular or... 81 5e-14 UniRef50_C5SBY0 Putative uncharacterized protein n=1 Tax=Allochr... 80 8e-14 UniRef50_Q6AMB5 Putative uncharacterized protein n=1 Tax=Desulfo... 80 1e-13 UniRef50_A7K0G4 Outer membrane lipoprotein-sorting protein n=28 ... 79 2e-13 UniRef50_Q08UT2 ABC efflux pump, inner membrane subunit, putativ... 68 3e-10 UniRef50_D2SA91 Putative sigma E regulatory protein, MucB/RseB n... 68 3e-10 UniRef50_Q023A5 Putative sigma E regulatory protein, MucB/RseB n... 58 4e-07 Sequences not found previously or not previously below threshold: UniRef50_Q8PYI1 Conserved protein n=2 Tax=Methanosarcina RepID=Q... 92 3e-17 UniRef50_Q8PY40 Conserved protein n=1 Tax=Methanosarcina mazei R... 86 2e-15 UniRef50_Q8PW79 Conserved protein n=4 Tax=Methanosarcinaceae Rep... 81 5e-14 UniRef50_Q8TI29 Putative uncharacterized protein n=1 Tax=Methano... 78 4e-13 UniRef50_A3HW42 Putative uncharacterized protein n=1 Tax=Algorip... 76 2e-12 UniRef50_Q9F2X7 Putative membrane protein n=11 Tax=Streptomyces ... 72 3e-11 UniRef50_A6UT98 Putative uncharacterized protein n=1 Tax=Methano... 71 6e-11 UniRef50_Q8TQL2 Putative uncharacterized protein n=1 Tax=Methano... 70 8e-11 UniRef50_C4DC81 Putative uncharacterized protein n=1 Tax=Stackeb... 68 4e-10 UniRef50_C0GKP3 Putative uncharacterized protein n=1 Tax=Dethiob... 68 4e-10 UniRef50_B5GWG6 Putative uncharacterized protein n=2 Tax=Strepto... 68 5e-10 UniRef50_A1ZTN2 Putative uncharacterized protein n=1 Tax=Microsc... 67 1e-09 UniRef50_Q1IY36 Outer membrane lipoprotein-sorting protein, LolA... 67 1e-09 UniRef50_D2Q368 Putative uncharacterized protein n=1 Tax=Kribbel... 66 2e-09 UniRef50_B6WQE2 Putative uncharacterized protein n=1 Tax=Desulfo... 64 6e-09 UniRef50_B1A1F2 Outer membrane lipoprotein-sorting protein (Frag... 63 1e-08 UniRef50_B8D1B5 Putative sigma E regulatory protein, MucB/RseB n... 63 2e-08 UniRef50_D2BF00 Outer membrane lipoprotein-sorting protein-like ... 62 2e-08 UniRef50_UPI0001C421AF hypothetical protein BpOF4_12330 n=1 Tax=... 62 3e-08 UniRef50_A1R6D5 Putative uncharacterized protein n=1 Tax=Arthrob... 62 4e-08 UniRef50_C6Q2P6 Putative uncharacterized protein n=1 Tax=Clostri... 61 5e-08 UniRef50_C7NRI7 Putative uncharacterized protein n=1 Tax=Halorha... 61 6e-08 UniRef50_Q1PYN9 Putative uncharacterized protein n=1 Tax=Candida... 60 1e-07 UniRef50_A0PYF7 Conserved protein, putative n=2 Tax=Clostridium ... 60 1e-07 UniRef50_B0LFU6 Outer membrane lipoprotein-sorting protein n=1 T... 59 2e-07 UniRef50_Q0R4F9 Outer membrane lipoprotein-sorting protein-like ... 59 2e-07 UniRef50_UPI0001693F8A sporulation protein YdcC n=1 Tax=Paenibac... 59 3e-07 UniRef50_A0JRW6 Putative uncharacterized protein n=1 Tax=Arthrob... 58 3e-07 UniRef50_B8KU32 Putative uncharacterized protein n=1 Tax=gamma p... 58 3e-07 UniRef50_B8G1H3 Putative uncharacterized protein n=2 Tax=Desulfi... 58 4e-07 UniRef50_Q2BEL0 Putative uncharacterized protein n=1 Tax=Bacillu... 58 4e-07 UniRef50_C4KC00 Putative uncharacterized protein n=2 Tax=Betapro... 58 5e-07 UniRef50_C6WKV9 Putative uncharacterized protein n=1 Tax=Actinos... 58 5e-07 UniRef50_UPI0001B5665E hypothetical protein StAA4_33033 n=1 Tax=... 57 7e-07 UniRef50_Q11RL4 Gliding motility-related protein; possible outer... 57 7e-07 UniRef50_C1RMD2 Putative uncharacterized protein n=1 Tax=Cellulo... 57 1e-06 UniRef50_B3QSY3 Putative uncharacterized protein n=1 Tax=Chloroh... 56 1e-06 UniRef50_D2LWF8 Putative uncharacterized protein n=1 Tax=Bacillu... 56 2e-06 UniRef50_Q0B2D2 Putative uncharacterized protein n=7 Tax=Burkhol... 55 3e-06 UniRef50_C0GCR8 Outer membrane lipoprotein-sorting protein-like ... 55 3e-06 UniRef50_Q1K3Y0 Putative sigma E regulatory protein, MucB/RseB n... 55 3e-06 UniRef50_Q73L56 Putative uncharacterized protein n=2 Tax=Trepone... 54 7e-06 UniRef50_A6L6C4 Putative uncharacterized protein n=6 Tax=Bactero... 53 1e-05 UniRef50_C1VEJ2 Outer membrane lipoprotein-sorting protein n=1 T... 53 1e-05 UniRef50_C6Y2Q1 Outer membrane lipoprotein carrier protein LolA ... 53 1e-05 UniRef50_C6CVN7 Outer membrane lipoprotein-sorting protein-like ... 53 1e-05 UniRef50_UPI0001C31609 hypothetical protein Cwoe_5741 n=1 Tax=Co... 53 1e-05 UniRef50_A4F8F3 Putative uncharacterized protein n=1 Tax=Sacchar... 53 1e-05 UniRef50_A7BRX8 Putative uncharacterized protein n=1 Tax=Beggiat... 53 2e-05 UniRef50_Q47DF5 Putative uncharacterized protein n=5 Tax=Betapro... 53 2e-05 UniRef50_C1A7M2 Outer-membrane lipoprotein carrier protein n=1 T... 52 2e-05 UniRef50_Q01SD9 Putative uncharacterized protein n=1 Tax=Candida... 52 2e-05 UniRef50_Q4VR68 Putative outer membrane lipoprotein carrier prot... 52 2e-05 UniRef50_Q0A7Y0 Outer-membrane lipoprotein carrier protein n=1 T... 52 3e-05 UniRef50_Q5UWV9 Putative uncharacterized protein n=1 Tax=Haloarc... 52 3e-05 UniRef50_Q08Y85 Putative uncharacterized protein n=1 Tax=Stigmat... 52 3e-05 UniRef50_C7Q2E8 Putative uncharacterized protein n=1 Tax=Catenul... 52 3e-05 UniRef50_C1DQJ1 Putative uncharacterized protein n=1 Tax=Azotoba... 52 4e-05 UniRef50_Q21L45 Putative uncharacterized protein n=1 Tax=Sacchar... 52 4e-05 UniRef50_B1ZYB9 Putative uncharacterized protein n=1 Tax=Opitutu... 52 4e-05 UniRef50_A6E6H9 Gliding motility-related protein; possible outer... 51 5e-05 UniRef50_C6MFK6 Putative uncharacterized protein n=1 Tax=Nitroso... 51 7e-05 UniRef50_O83768 Uncharacterized protein TP_0789 n=2 Tax=Treponem... 51 7e-05 UniRef50_A6Q8U0 Putative uncharacterized protein n=1 Tax=Sulfuro... 50 8e-05 UniRef50_A1WM62 Exporters of the RND superfamily-like protein n=... 50 8e-05 UniRef50_B5JWQ7 Outer membrane lipoprotein-sorting protein n=1 T... 50 8e-05 UniRef50_B1WVL4 Putative uncharacterized protein n=1 Tax=Cyanoth... 50 8e-05 UniRef50_A3PA11 Putative uncharacterized protein n=36 Tax=pseudo... 50 9e-05 UniRef50_C1SMG9 Putative uncharacterized protein n=1 Tax=Denitro... 50 9e-05 UniRef50_D0MFS0 Putative uncharacterized protein n=1 Tax=Rhodoth... 50 9e-05 UniRef50_O28352 Putative uncharacterized protein n=1 Tax=Archaeo... 50 1e-04 UniRef50_Q26CG2 Putative uncharacterized protein n=1 Tax=Flavoba... 50 1e-04 UniRef50_C0BN55 Putative uncharacterized protein n=1 Tax=Flavoba... 50 1e-04 UniRef50_Q15XA3 Putative uncharacterized protein n=1 Tax=Pseudoa... 50 1e-04 UniRef50_Q2JI91 Putative uncharacterized protein n=2 Tax=Synecho... 50 1e-04 UniRef50_Q1DC93 Outer membrane lipoprotein carrier protein LolA ... 50 1e-04 UniRef50_D2RYN2 Outer membrane lipoprotein-sorting protein-like ... 50 1e-04 UniRef50_Q1IS82 Putative uncharacterized protein n=1 Tax=Candida... 50 2e-04 UniRef50_A1WMB7 Putative uncharacterized protein n=1 Tax=Vermine... 50 2e-04 UniRef50_B4CUK7 Putative uncharacterized protein n=1 Tax=Chthoni... 50 2e-04 UniRef50_D2L9G4 Putative uncharacterized protein n=1 Tax=Desulfo... 50 2e-04 UniRef50_C7NRE8 Putative uncharacterized protein n=1 Tax=Halorha... 50 2e-04 UniRef50_B5YD52 Putative uncharacterized protein n=2 Tax=Dictyog... 49 2e-04 UniRef50_A9AXZ0 Putative uncharacterized protein n=1 Tax=Herpeto... 49 2e-04 UniRef50_A2WC86 Outer membrane lipoprotein-sorting protein n=19 ... 49 2e-04 UniRef50_Q6MIJ7 Putative uncharacterized protein n=1 Tax=Bdellov... 49 2e-04 UniRef50_Q3A8J7 Putative outer membrane lipoprotein-sorting prot... 49 2e-04 UniRef50_C4LE40 Putative uncharacterized protein n=5 Tax=Proteob... 48 3e-04 UniRef50_A9EA99 Putative uncharacterized protein n=1 Tax=Kordia ... 48 3e-04 UniRef50_Q04R19 Outer membrane lipoprotein-sorting protein n=7 T... 48 4e-04 UniRef50_Q5V481 Putative uncharacterized protein n=1 Tax=Haloarc... 48 4e-04 UniRef50_A2U292 Putative uncharacterized protein n=2 Tax=Polarib... 48 4e-04 UniRef50_D1BIU8 Putative uncharacterized protein n=1 Tax=Sanguib... 48 4e-04 UniRef50_Q47GZ2 Putative uncharacterized protein n=1 Tax=Dechlor... 48 5e-04 UniRef50_C0ZK20 Putative uncharacterized protein ydcC n=1 Tax=Br... 48 6e-04 UniRef50_C6E6V2 Putative outer membrane lipoprotein-sorting prot... 48 6e-04 UniRef50_A0L521 Putative uncharacterized protein n=1 Tax=Magneto... 47 7e-04 UniRef50_Q1JW20 Outer membrane lipoprotein carrier protein LolA ... 47 8e-04 UniRef50_B4CZL7 Putative sigma E regulatory protein, MucB/RseB n... 47 0.001 UniRef50_Q3IRT8 Putative uncharacterized protein n=1 Tax=Natrono... 47 0.001 UniRef50_A5FI22 Possible lipoprotein carrier protein LolA n=17 T... 46 0.001 UniRef50_D2RQ57 Putative uncharacterized protein n=2 Tax=Halobac... 46 0.001 UniRef50_Q5UZG4 Putative uncharacterized protein n=2 Tax=Haloarc... 46 0.002 UniRef50_B7RWJ6 Putative uncharacterized protein n=1 Tax=marine ... 46 0.002 UniRef50_Q5WII2 Putative uncharacterized protein n=1 Tax=Bacillu... 46 0.002 UniRef50_Q3JE72 Outer membrane lipoprotein carrier protein LolA ... 46 0.002 UniRef50_C3X224 Outer-membrane lipoprotein carrier protein n=1 T... 46 0.002 UniRef50_A0LL73 Putative uncharacterized protein n=2 Tax=Bacteri... 45 0.002 UniRef50_C1DM29 Putative uncharacterized protein n=1 Tax=Azotoba... 45 0.003 UniRef50_B9ZJT9 Outer membrane lipoprotein carrier protein LolA ... 45 0.003 UniRef50_A4BK05 Putative uncharacterized protein n=1 Tax=Reineke... 45 0.003 UniRef50_Q024X2 Putative uncharacterized protein n=1 Tax=Candida... 45 0.003 UniRef50_Q028U0 Putative uncharacterized protein n=1 Tax=Candida... 45 0.003 UniRef50_Q1CYJ5 Putative uncharacterized protein n=3 Tax=Proteob... 45 0.003 UniRef50_B3PIM7 Putative uncharacterized protein n=1 Tax=Cellvib... 45 0.003 UniRef50_D0MJ06 Outer membrane lipoprotein carrier protein LolA ... 45 0.003 UniRef50_B5JN43 Putative uncharacterized protein n=1 Tax=Verruco... 45 0.004 UniRef50_B0R4V3 Putative uncharacterized protein n=2 Tax=Halobac... 45 0.004 UniRef50_B3JHP5 Putative uncharacterized protein n=2 Tax=Bactero... 45 0.004 UniRef50_Q2KWE1 Outer-membrane lipoprotein carrier protein n=5 T... 45 0.005 UniRef50_Q0AW72 Putative uncharacterized protein n=1 Tax=Syntrop... 45 0.005 UniRef50_C1M5T8 Putative uncharacterized protein n=1 Tax=Citroba... 44 0.006 UniRef50_A7VAU1 Putative uncharacterized protein n=6 Tax=Bactero... 44 0.008 UniRef50_C4LEV5 Putative uncharacterized protein n=1 Tax=Tolumon... 43 0.009 UniRef50_Q73J73 Putative uncharacterized protein n=2 Tax=Trepone... 43 0.010 UniRef50_A9B0Y6 Putative uncharacterized protein n=1 Tax=Herpeto... 43 0.011 UniRef50_Q1YTK5 Periplasmic chaperone LolA n=1 Tax=gamma proteob... 43 0.013 UniRef50_UPI00016C47D6 hypothetical protein GobsU_33384 n=1 Tax=... 43 0.014 UniRef50_C0YK29 Outer-membrane lipoprotein carrier protein n=2 T... 43 0.014 UniRef50_Q1DBW5 Putative uncharacterized protein n=1 Tax=Myxococ... 43 0.019 UniRef50_A4BKL6 Putative uncharacterized protein n=1 Tax=Reineke... 43 0.019 UniRef50_A6TVK9 Outer membrane lipoprotein-sorting protein-like ... 42 0.021 UniRef50_Q01T82 Redoxin domain protein n=1 Tax=Candidatus Soliba... 42 0.024 UniRef50_B5EUN7 Putative uncharacterized protein n=52 Tax=Vibrio... 42 0.025 UniRef50_Q8PU97 Conserved protein n=2 Tax=Methanosarcina RepID=Q... 42 0.025 UniRef50_Q7NE58 Gll4022 protein n=1 Tax=Gloeobacter violaceus Re... 42 0.025 UniRef50_B5WKG7 Putative uncharacterized protein n=2 Tax=Burkhol... 42 0.033 UniRef50_C0QCP5 LolF n=1 Tax=Desulfobacterium autotrophicum HRM2... 41 0.037 UniRef50_Q1LE66 Conserved hypothetical signal peptide protein n=... 41 0.041 UniRef50_C7LZI1 Putative uncharacterized protein n=1 Tax=Acidimi... 41 0.049 UniRef50_C8R1Z9 Putative outer membrane protein n=2 Tax=Proteoba... 41 0.053 >UniRef50_P0AFY0 Sigma-E factor regulatory protein rseB n=161 Tax=Enterobacteriaceae RepID=RSEB_ECO57 Length = 318 Score = 361 bits (928), Expect = 1e-98, Method: Composition-based stats. Identities = 318/318 (100%), Positives = 318/318 (100%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY Sbjct: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK Sbjct: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL Sbjct: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRP 240 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRP Sbjct: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRP 240 Query: 241 LPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGEL 300 LPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGEL Sbjct: 241 LPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGEL 300 Query: 301 PPQTAKRIAENIKFGAAQ 318 PPQTAKRIAENIKFGAAQ Sbjct: 301 PPQTAKRIAENIKFGAAQ 318 >UniRef50_A6SXQ7 Sigma-E factor negative regulatory protein RseB n=3 Tax=cellular organisms RepID=A6SXQ7_JANMA Length = 340 Score = 342 bits (877), Expect = 1e-92, Method: Composition-based stats. Identities = 69/333 (20%), Positives = 140/333 (42%), Gaps = 20/333 (6%) Query: 4 LWFAMSLVTGSLLFSANAS--------ATPASGALLQQMNLASQSLNYELSFISINKQGV 55 + + L + + F+A A + L+++ ++Q LNY +F+ V Sbjct: 7 FFKFVVLFSSVIAFTAQAENVGASHEHDAHDTQVWLKKIQSSAQKLNYSGTFVYQQGSQV 66 Query: 56 ESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLI 115 + R H L +L +DG RE ++ EI+ + P + + D P+++ Sbjct: 67 RTSRITHIFNGKNELEKLEILDGKPREYIRNNEEIACYVPENKSIRVEKRVTKDVFPAIL 126 Query: 116 YTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDR 175 L+ +Y+ R+A C+ I + +D RY Y +W + + L ++ ++ Sbjct: 127 GASPADLAEHYNLKKGETGRVAGYDCQAIILEPKDKLRYGYKLWAEKSTGLLLKAQTVNE 186 Query: 176 DGETLEQFRVIAFNVN-QDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEV 234 + +EQ ++ D S + + + + E WT +P GF ++ Sbjct: 187 KNDVVEQIAFTQLSIGHIDPSRVKSSFPNTQGWRVENAVMSETNLSGWTVKDIPPGFKKI 246 Query: 235 SSSRR------PLPTMDNMP-----IESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRT 283 +R P +N P + +YSDGL + SV + T S T+ ++ G Sbjct: 247 REMKRLITDTAPANAAENTPPTQREVSQIVYSDGLAAISVFIESGTQSRTEGSMQQGAMN 306 Query: 284 VSTSVRDNAEITIVGELPPQTAKRIAENIKFGA 316 + + + +T+VGE+P K+++ +I+F + Sbjct: 307 IVGKRQGDYWLTVVGEVPAAAIKQVSNSIEFKS 339 >UniRef50_C0N4S1 MucB/RseB family n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N4S1_9GAMM Length = 327 Score = 327 bits (838), Expect = 4e-88, Method: Composition-based stats. Identities = 75/329 (22%), Positives = 146/329 (44%), Gaps = 13/329 (3%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 M+ L +++ + S A+ + +L++M A+++L YE F + + ++S+R Sbjct: 1 MRFLLHLFLVMSVAWSASIQANDKE-AVQMLERMTEAAKNLTYEGVFAYQSGKTLQSIRI 59 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 H + +L+ ++G REV++ + ++ P + ++ + PS + Sbjct: 60 FHRADARGEVERLISLNGAAREVIRSNDMVTCINPEGKQVNVSRRPLGRGFPSDLPRRLS 119 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 +PYY+ R+A R + + D RY Y +W+D+E+ L ++ +L + GE L Sbjct: 120 SATPYYEVGLGDTDRVAGRQAHELIIKPLDNYRYGYRLWVDSETGLLLKSELRNDQGEVL 179 Query: 181 EQFRVIAFNVN---------QDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGF 231 E F + + + ++ T ++ + + W WLP+GF Sbjct: 180 ETFAFSSVSTSVHIPEHKLKPQMNGEEMTWHRSEPETPMDMAKMTNNVSQWRMQWLPEGF 239 Query: 232 SEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVN--RATPSSTDQMLRTGRRTVSTSVR 289 + V+ R L + +E R+YSDGL S S+ + RA + G ++ Sbjct: 240 ALVAQQTR-LRASNGAAVEQRVYSDGLSSVSIFIEKIRARHDHLNGGSHVGAINAYGTIM 298 Query: 290 DNAEITIVGELPPQTAKRIAENIKFGAAQ 318 +T+VGE+P T ++I I AAQ Sbjct: 299 HAHFVTVVGEVPAVTVEKIGNAITHIAAQ 327 >UniRef50_C5V4B6 Sigma E regulatory protein, MucB/RseB n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V4B6_9PROT Length = 314 Score = 326 bits (837), Expect = 5e-88, Method: Composition-based stats. Identities = 71/323 (21%), Positives = 131/323 (40%), Gaps = 14/323 (4%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 MK + L A + + L+ A NY F+ VE+ R Sbjct: 1 MKVWAGLLGLCLA-----AGMADAASIPEWLKTAAFAGHQTNYSGVFVYQYGNHVETSRI 55 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 H + +L +DGP+RE+++ ++ ++ + ++ P L+ Sbjct: 56 SHVVETDSEYEKLESLDGPKREIIRHHGQVWCYQ-NHKMVQVDSQQ-AGRFPFLLPDQLA 113 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 L+ Y +G R+A +V+ RD RY++ +W+ TES L ++ +L+ + + Sbjct: 114 ALNENYQAKELGTDRVAGYNAQVVLYQPRDSLRYAHKIWVHTESGLLLKSAVLNEKNQVV 173 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLP---PLLSVPVGEKAKFSWTPTWLPQGFSEVSSS 237 EQ+ + DI S ++ A LP V W LP GF + Sbjct: 174 EQYAFTELKIGGDIDRSW-VVSSAALPGFGRNKPVQSKPVVNSGWVVDALPGGFKKTMEI 232 Query: 238 RRPLPTMDNMPIESRLYSDGLFSFSVNVNR--ATPSSTDQMLRTGRRTVSTSVRDNAEIT 295 RP+ + P+ ++SDGL + SV + A + + G + V D Sbjct: 233 MRPMRG-KHAPVSQLVFSDGLSAISVFIEPADADEDDNEGLTSRGAVNLYHKVVDKHLYN 291 Query: 296 IVGELPPQTAKRIAENIKFGAAQ 318 +VGE+PP+ ++ ++I+F + Sbjct: 292 VVGEVPPRAVMQVLDSIRFNGNK 314 >UniRef50_Q7MHN3 Negative regulator of sigma E activity n=68 Tax=Bacteria RepID=Q7MHN3_VIBVY Length = 325 Score = 324 bits (831), Expect = 2e-87, Method: Composition-based stats. Identities = 142/318 (44%), Positives = 208/318 (65%), Gaps = 3/318 (0%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 MK+ F++ + + A AS P + ALL QM+ ASQ+L+YEL++I I K +E L Y Sbjct: 1 MKKFLFSVCALFSVMTPQAFASDKP-AEALLHQMSEASQNLSYELAYILIKKNSIEPLLY 59 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 RHA + + A L+ + GP REV++RG+E+SY EPG+EPFT+ +V + ++ +D Sbjct: 60 RHASKEAQQYAHLIYLSGPVREVIKRGHEVSYIEPGVEPFTIQAGEMVAPVMPMLGSDID 119 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 +L +YD++ VGR R A +VIR+V +DG RYSY+VW+D +SKLP+R DL+DRDGE + Sbjct: 120 QLHKFYDYVQVGRAREAGSPTQVIRIVPKDGLRYSYVVWIDEQSKLPLRADLVDRDGEVI 179 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRP 240 EQ+R I + VNQ I+ M L LP +L++P GE K +W +W P+GF SR Sbjct: 180 EQYRAITYTVNQKIADLMSGLEDVQLPAVLTLPKGEVEKSNWRVSWTPEGFVANDLSRYR 239 Query: 241 LPTMDNMPIESRLYSDGLFSFSVNV-NRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGE 299 L D M +ES+L++DGLFSFSV V + S Q++R GRRT+ + V EI++VG+ Sbjct: 240 LALTDQM-VESQLFTDGLFSFSVYVAEKDDHSLKGQLVRQGRRTLHSVVVGEHEISVVGD 298 Query: 300 LPPQTAKRIAENIKFGAA 317 +PP TA+RIA+++ F A Sbjct: 299 IPPATAQRIAQSVTFTAE 316 >UniRef50_Q7N1X1 Sigma-E factor regulatory protein RseB n=8 Tax=Enterobacteriaceae RepID=Q7N1X1_PHOLL Length = 318 Score = 324 bits (830), Expect = 3e-87, Method: Composition-based stats. Identities = 163/319 (51%), Positives = 229/319 (71%), Gaps = 4/319 (1%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPA-SGALLQQMNLASQSLNYELSFISINKQGVESLR 59 MK++WF++ L+ GSL ASA + + LLQ+M A++SL YEL+FI++N Q + S+R Sbjct: 1 MKRIWFSVCLLAGSLFAPLQASAQLSSAEVLLQEMGNATRSLTYELAFINLNPQAIVSVR 60 Query: 60 YRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDF 119 YRHA ++ P+AQ++QMDG RREVVQRGNEISYFEPGL+ F+L+G++I+D LP++I+ DF Sbjct: 61 YRHAIINGIPIAQIMQMDGSRREVVQRGNEISYFEPGLDAFSLSGNHIIDYLPAVIFADF 120 Query: 120 KRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGET 179 +L YY+FI VGRT I DR C V+R+ ++D RY+YI+ +D E+ LP+R+DLLDRD E Sbjct: 121 NQLKKYYNFIDVGRTHIGDRPCRVVRITSKDEVRYNYILLIDEETHLPLRIDLLDRDSEA 180 Query: 180 LEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRR 239 LEQFRV++ ++ DI+ +M + + N+PP+L +P EK F+W LP GF EVS SRR Sbjct: 181 LEQFRVVSSTIDGDINDAMSVITRLNMPPMLVIPPSEKVVFNWKVGKLPIGFVEVSRSRR 240 Query: 240 PLPTMDNMPIESRLYSDGLFSFSVNVNRATP-SSTDQMLRTGRRTVSTSVRDNAEITIVG 298 LP ++ +ES ++SDGLFSFSVNV A + LR G RT+ +++R E+TI+G Sbjct: 241 KLP--NSGTLESVMFSDGLFSFSVNVTNADKTGKLEYPLRRGARTIYSAIRGANEVTIIG 298 Query: 299 ELPPQTAKRIAENIKFGAA 317 ELP TAKRIA + F A Sbjct: 299 ELPLATAKRIAAGVAFIGA 317 >UniRef50_C6X6N7 Sigma E regulatory protein, MucB/RseB n=2 Tax=Methylophilaceae RepID=C6X6N7_METSD Length = 322 Score = 321 bits (823), Expect = 2e-86, Method: Composition-based stats. Identities = 74/323 (22%), Positives = 137/323 (42%), Gaps = 8/323 (2%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 MK+ LV+ L +A AT +LQ+ A++ L+Y+ F+ + G S++ Sbjct: 1 MKRGVLGFLLVSHVALATAAGEATGDPWMVLQKAAQAARELSYQGVFVYQSGTGSRSVQI 60 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 H A+++ +DG REV+ +G ++ F P E + + P+++ ++ Sbjct: 61 THMNYGQGEYARIVVLDGTPREVLSQGRDVVIFSPRNEKVVIEKRRGQNMFPAVLPSNLD 120 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 + YD G RI R +++ + +D RY+Y W D E L ++ + E + Sbjct: 121 AIKSSYDVKFGGTERIGGRDGQMVILSPKDKFRYTYKFWADREYGLLLKSMSANERNEPM 180 Query: 181 EQFRVIAFNV--NQDISSSMQTLAKANLPPLLSV---PVGEKAKFSWTPTWLPQGFSEVS 235 EQF + +Q + ++ + +WT LP G+ +V Sbjct: 181 EQFAFNQLTLMNSQKMDWFQPNVSPEKQYVMEESGAGRSEPVEAITWTVEQLPSGYRKVD 240 Query: 236 SSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRT--GRRTVSTSVRDNAE 293 R +P P+ +YSDGL S S+ + ++ + G +V + + Sbjct: 241 EITRLVPG-KPAPVTQIVYSDGLASVSLFIEPLLKGMAPKVGHSAFGATHFYANVLEGHQ 299 Query: 294 ITIVGELPPQTAKRIAENIKFGA 316 + +VGE+P T +IA I F Sbjct: 300 VVVVGEVPEATVTQIANTIHFKK 322 >UniRef50_B5JX06 MucB/RseB n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JX06_9GAMM Length = 330 Score = 318 bits (816), Expect = 1e-85, Method: Composition-based stats. Identities = 78/325 (24%), Positives = 146/325 (44%), Gaps = 14/325 (4%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 +K ++L+ L +A + L+ M A Q+ +Y +F+ ++ +ES+R Sbjct: 10 LKAFAAGLALLFAPLSLNA---DDASPVEWLKGMCDAMQNQSYTGTFVYLHGNSMESMRV 66 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 D +L+ ++G RE+++R N ++ P L T+N + LP + + Sbjct: 67 VRRHTDAGSDEKLVSLNGEPREILRRNNVVTQILPKLGVVTVNKARVRSQLPLSVPMEID 126 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 + YY G R+A R C+V+ + RD RY + +W+D S+L ++ DLLD G+ L Sbjct: 127 GIERYYQLSLEGVERVAGRRCQVLSLKPRDSYRYGHRLWIDESSRLLIKSDLLDTQGDVL 186 Query: 181 EQFRVIAFNVNQDISSSMQTLA----KANLPPLLSVPVGEK--AKFSWTPTWLPQGFSEV 234 EQ V+ ++ +M L + + W + PQGF Sbjct: 187 EQIMYTELEVSPQLTDAMFEPEFDTAGLKRRELGHADQQQLLMSDHQWRVSRAPQGFMLT 246 Query: 235 SSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPS---STDQMLRTGRRTVSTSVRDN 291 + RR ++ +E +YSDG+ + SV V + R G V+ + Sbjct: 247 THERR--GASESAAVEHMVYSDGMATVSVFVEPLAKGENMPVEGHSRMGALNAYGRVQGS 304 Query: 292 AEITIVGELPPQTAKRIAENIKFGA 316 ++ +VGE+P T K+++E+++ + Sbjct: 305 HKVVVVGEVPAATVKQLSESVEARS 329 >UniRef50_C6P3S1 Sigma E regulatory protein, MucB/RseB n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P3S1_9PROT Length = 325 Score = 318 bits (815), Expect = 2e-85, Method: Composition-based stats. Identities = 67/326 (20%), Positives = 132/326 (40%), Gaps = 12/326 (3%) Query: 1 MKQLWFAMSLVTGSLLFSANASA-TPASGALLQQMNLASQSLNYELSFISINKQGVESLR 59 M+Q + ++ + SA A L+ M A+ +Y F+ + VE R Sbjct: 1 MRQYSYLFFMLLQLGVASAFADPLRADESDWLKTMAFAAHQTDYSGVFVYQSGGRVEMSR 60 Query: 60 YRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDF 119 H +L + G RRE+++ +++ + G + + I S P+L+ Sbjct: 61 ITHVSDSAGEHERLEGIGGERRELIRDNDQVWLYTDGHK-VRVEKRQIKRSFPALLPEQI 119 Query: 120 KRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGET 179 L Y +A + + RD RY+ +W D++S L ++ +L+ G Sbjct: 120 SLLKENYSVTQAEEDEVAGYHAHAVVFLPRDNLRYARKLWADSDSGLLLKAVVLNDRGLV 179 Query: 180 LEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKF-------SWTPTWLPQGFS 232 +EQ+ + N+ +I K + + + + K W LP GF Sbjct: 180 IEQYAFMQLNIGGNIDRKWIVQDKPSAAMVQELHLSPLPKVELLEEPCGWQVDALPSGFK 239 Query: 233 EVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSS--TDQMLRTGRRTVSTSVRD 290 ++ RRP I ++SDGL SV + ++ +S + G + + Sbjct: 240 KILEMRRPFRANKEHVI-QMVFSDGLAGISVFIEKSQDASYLHSGLSGQGAVHIYNRIVG 298 Query: 291 NAEITIVGELPPQTAKRIAENIKFGA 316 + IT+VGE+P +T ++ +++++ Sbjct: 299 DHLITVVGEVPSRTVIQVGDSVRYAG 324 >UniRef50_Q1H2L7 Sigma E regulatory protein, MucB/RseB n=1 Tax=Methylobacillus flagellatus KT RepID=Q1H2L7_METFK Length = 316 Score = 318 bits (814), Expect = 2e-85, Method: Composition-based stats. Identities = 75/320 (23%), Positives = 134/320 (41%), Gaps = 9/320 (2%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 MK+ A L T F A + + +LQ+ A+ L+Y+ FI ++S++ Sbjct: 1 MKRFLLAWLLAT---PFVAAHAESEDPWLVLQKAARAAHELSYKGVFIYQAGDNIKSVQI 57 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 H A+++ +DG REV+ +G ++ F E + + P+++ D + Sbjct: 58 THTNSGQGEYARMVVLDGAPREVLSQGGDVVIFSSKNEKVIMEKRRAHNLFPAVLPDDME 117 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 L Y G RIA R V+ + RDG RY+Y W D E L ++ +L + L Sbjct: 118 LLKANYQARIGGTERIAGRAGRVVFLDPRDGLRYAYKFWADCEYGLLLKSLMLSEQKQML 177 Query: 181 EQFRVIAFNVNQD--ISSSMQTLAKANLPPLLSV-PVGEKAKFSWTPTWLPQGFSEVSSS 237 EQ N+ ++ + ++ + L + +WT LP G+ +V Sbjct: 178 EQMAFSQLNMMEEQGMDWFHPSVDHSKHYILEEANAQLVQEASNWTVGALPVGYRKVEQV 237 Query: 238 RRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTD--QMLRTGRRTVSTSVRDNAEIT 295 R +P + P+ +++DGL S S+ + + G +V +I Sbjct: 238 TRLVPG-KSAPVTQVIFTDGLASVSLFIEPLSKGVRPRIGQTSKGATHFYANVSKGHQIL 296 Query: 296 IVGELPPQTAKRIAENIKFG 315 +VGE+P T +I + F Sbjct: 297 VVGEVPAATVAQIGSAVSFK 316 >UniRef50_Q3J8C9 Sigma E regulatory protein, MucB/RseB n=2 Tax=Nitrosococcus oceani RepID=Q3J8C9_NITOC Length = 350 Score = 316 bits (810), Expect = 7e-85, Method: Composition-based stats. Identities = 72/334 (21%), Positives = 147/334 (44%), Gaps = 23/334 (6%) Query: 6 FAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARL 65 ++++ SL ++ ++ + L+ +M A++SLNY+ F+ + +++++ H Sbjct: 15 LLLTILATSLPSASLGKSSDTALQLIDRMGKAAESLNYQGVFVYLQNSRLKAVQVIHKVD 74 Query: 66 DNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVD--------------SL 111 + +L+ ++G RE+++ ++ P + ++ D L Sbjct: 75 EYGEHERLVSLNGMPREIIRNNELVTCILPEDKAVLVDEHRYPDKAVVARSKSFRSNNGL 134 Query: 112 PSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVD 171 + K + +Y F RIA R + + +V RD RY Y +W+D E+ L ++ Sbjct: 135 SRRLPAKLKAMREHYQFSLGKPDRIAGRETQQVVIVPRDQYRYGYHLWIDRETGLLLKTV 194 Query: 172 LLDRDGETLEQFRVIAFNVNQDISSSMQTLAKA----NLPPLLSVPVGE-KAKFSWTPTW 226 + + G+ LEQ + + I + A + S+ + + W W Sbjct: 195 MTEDGGQILEQMMFTSLLLPAKIPDTELVPTVAGREFSWREGESLSMDPDNHESKWKIGW 254 Query: 227 LPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATP---SSTDQMLRTGRRT 283 LP GF+ V+ SR LP P+E +YSDGL S S+ + S G Sbjct: 255 LPAGFALVAHSRDLLPNS-QAPVEHMVYSDGLSSVSIFIEPVRHTKRSHLSGFSSMGAVN 313 Query: 284 VSTSVRDNAEITIVGELPPQTAKRIAENIKFGAA 317 +++ +T+VGE+P T +R+ ++I++ ++ Sbjct: 314 AYGTIQALHYLTLVGEVPHITVERMGKSIRYLSS 347 >UniRef50_A6VKY3 Sigma E regulatory protein, MucB/RseB n=1 Tax=Actinobacillus succinogenes 130Z RepID=A6VKY3_ACTSZ Length = 318 Score = 312 bits (799), Expect = 1e-83, Method: Composition-based stats. Identities = 114/314 (36%), Positives = 183/314 (58%), Gaps = 3/314 (0%) Query: 2 KQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYR 61 K L++ L A + LL M A Q LNY+ F+ + +L+YR Sbjct: 7 KPTALFACLLSFLLAAPVWAGEELSPQQLLNSMTQAEQQLNYQFIFVQNDNGNNHALQYR 66 Query: 62 HARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKR 121 ++ +N+ AQ+ MDG +R+++QR + +SYF P + PFTL YIVD+LP L+ +F + Sbjct: 67 YSLKENKKYAQMTTMDGVKRDIIQRDDMVSYFRPQMAPFTLKSKYIVDNLPPLMQANFNK 126 Query: 122 LSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLE 181 L+ YYDF ++GR RIADR+ +++R+ +D RY Y+ ++D E+ L +R DLLD+DG L+ Sbjct: 127 LAKYYDFTALGRNRIADRMVQMVRITPKDNFRYRYVAFIDEETHLLLRSDLLDQDGVLLD 186 Query: 182 QFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPL 241 QFR+I V++ ++++ + PPL+S +W WLPQGF ++ + Sbjct: 187 QFRIIQLAVSETPLPFVESVEQLPFPPLISAQSRPGKSSNWKLNWLPQGFRQIRKTETTD 246 Query: 242 PTMDNMPIESRLYSDGLFSFSVNVNRAT-PSSTDQMLRTGRRTVSTSVRDNAEITIVGEL 300 +N ESR YSDGLF+F + V+ + + LR G T+ + ++ EIT++G+L Sbjct: 247 DEGNNT--ESRFYSDGLFTFEIFVSDGQKDEAQNSSLRHGAVTIYSETVNDKEITLIGQL 304 Query: 301 PPQTAKRIAENIKF 314 P TAKRI +++KF Sbjct: 305 PIGTAKRIVQDLKF 318 >UniRef50_Q2SXT9 Sigma factor algU regulatory protein MucB n=56 Tax=Burkholderia RepID=Q2SXT9_BURTA Length = 351 Score = 311 bits (797), Expect = 2e-83, Method: Composition-based stats. Identities = 78/321 (24%), Positives = 141/321 (43%), Gaps = 19/321 (5%) Query: 16 LFSANASATP-----ASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDN-RP 69 SA P + L ++ LA+Q NYE +F+ V+S R H Sbjct: 32 PVSAQQPDDPVATRRQAAEWLDRIQLAAQQQNYEGTFVYQRGAYVQSSRIVHVASKGDGE 91 Query: 70 LAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFI 129 ++ +DG R++++ +++ F P + DS P+L+ +++ Y+ Sbjct: 92 YERVESLDGKPRKLLRHNDDLYTFVPERRLCVVERRQNKDSFPALLGASGEQVLSVYEPK 151 Query: 130 SVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFN 189 S+GR R+A +V+ +V +D R++Y +W D ++ L +R LD D LEQ Sbjct: 152 SLGRDRVAGLDAQVVELVPKDAYRFAYKLWTDAKTGLLLRSQTLDADDRVLEQIAFSQLQ 211 Query: 190 VNQ-------DISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLP 242 + I++ M+ L + V + W GF ++ RRP+ Sbjct: 212 LGAAGPSQKTTIAAGMRHLGGWTVVRP-PVSPVDIEAQGWQIAPTVAGFRKIREVRRPMA 270 Query: 243 TMD----NMPIESRLYSDGLFSFSVNVNRATP-SSTDQMLRTGRRTVSTSVRDNAEITIV 297 D +P++ +++DGL + SV + A S + TG V R + IT++ Sbjct: 271 ARDANDPPIPVDQAVFTDGLATISVFIEPAEKNSRKEGAGGTGATHVLVKRRGDFWITVL 330 Query: 298 GELPPQTAKRIAENIKFGAAQ 318 GE PP T ++ A I++ A++ Sbjct: 331 GEAPPATLQQFASAIEYKASK 351 >UniRef50_A4BRZ0 MucB/RseB n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BRZ0_9GAMM Length = 347 Score = 310 bits (795), Expect = 4e-83, Method: Composition-based stats. Identities = 80/329 (24%), Positives = 132/329 (40%), Gaps = 18/329 (5%) Query: 2 KQLWFAMSLVTGSLL-----FSANASATPASGALLQQMNLASQSLNYELSFISINKQGVE 56 + W + + L A+A+ + A+ ALLQ+M A + NY + ++ Sbjct: 11 RWFWLGALVCLAACLVLGTRAQADANESQAAQALLQRMMHAVRFTNYVGVCVYRFGDNLQ 70 Query: 57 SLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIY 116 ++R H + +L+ ++GP RE+++ + + +P N + + Sbjct: 71 TIRIVHQVKNGHRYERLISLNGPEREIIRTDAQATRIQPSEHFIAQNLALLNPPFDTAFS 130 Query: 117 TDFKR-------LSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMR 169 D R Y +G R+A R + +V D RY Y +W+D +S L +R Sbjct: 131 GDTARSVAVDDFWDNIYGLELLGTDRVAGRETRRLNIVPFDHFRYGYRLWIDEDSGLLLR 190 Query: 170 VDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAK------ANLPPLLSVPVGEKAKFSWT 223 DL+D GE LEQ I A + + G +W Sbjct: 191 SDLIDEAGEPLEQIMFTRIETPDTIPDQWLESAPNSDAITWHRVHAPHMQRGTVMASAWM 250 Query: 224 PTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRT 283 LP+GF +PL N IE LYSDGL + SV + + R G + Sbjct: 251 IGDLPEGFKLAFRGHQPLHGERNDFIEHWLYSDGLATVSVYIRPQGRHPFNGWSRMGAVS 310 Query: 284 VSTSVRDNAEITIVGELPPQTAKRIAENI 312 D+ +I +VGE+P T +RI E++ Sbjct: 311 TFGRTLDDYQIIVVGEVPAVTVRRIGESM 339 >UniRef50_C4ZKS3 Sigma E regulatory protein, MucB/RseB n=3 Tax=Rhodocyclaceae RepID=C4ZKS3_THASP Length = 322 Score = 308 bits (790), Expect = 1e-82, Method: Composition-based stats. Identities = 74/321 (23%), Positives = 133/321 (41%), Gaps = 11/321 (3%) Query: 5 WFAMSLVTGSLLFSANASATP--ASGALLQQMNLASQSLNYELSFISINKQGVESLRYRH 62 WF L +LL ASA + L +++ A Q LNY +F+ + VE+ R H Sbjct: 3 WFPAMLGLCALLAQGPASAEHPTDPLSWLGRISTAGQRLNYVGTFVYQSGSHVETSRIAH 62 Query: 63 ARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRL 122 + +L +DG RE+++RG E+ P ++ + P+ + L Sbjct: 63 RVDASGEYERLEVLDGSPREIIRRGAEVRCVLPDERTVIIDEAQGRRAFPARLPASPTGL 122 Query: 123 SPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQ 182 + Y R+A + + + +D RY +++W D +S L ++ LD+ G +EQ Sbjct: 123 AENYRVRKGELGRVAGLEAQALVLEPKDELRYGHVLWADVQSGLLLKSRTLDQHGAVIEQ 182 Query: 183 FRVIAFNVNQDISSSMQTL-----AKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSS 237 F + ++ +S+ + V + +A W G++ S+ Sbjct: 183 FSFSELRIGGEVENSLLESRFKTDEGWRMVNARGVSMSVEAA-GWVLEPAVPGYALTSAM 241 Query: 238 RRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQM--LRTGRRTVSTSVRDNAEIT 295 +RPL + ++SDGL + SV + S + L +G + D +T Sbjct: 242 KRPLGRDRGEAV-HMVFSDGLAAISVFIEPIGEGSRAGLGPLSSGAINIFKRAIDGHLVT 300 Query: 296 IVGELPPQTAKRIAENIKFGA 316 +GE P +RI E I+ A Sbjct: 301 ALGEAPEAAVRRIGEGIRPEA 321 >UniRef50_Q3IDL6 Putative anti sigma E (Sigma 24) factor, negative regulator n=3 Tax=Alteromonadales RepID=Q3IDL6_PSEHT Length = 317 Score = 308 bits (790), Expect = 2e-82, Method: Composition-based stats. Identities = 98/318 (30%), Positives = 171/318 (53%), Gaps = 9/318 (2%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 MK + F +SL + F+ AS T + LL +M A + N++ SF+ + + +E R+ Sbjct: 1 MKVITFILSLA---ISFNTFASDTNPAKDLLLKMANAVHTRNFDASFVVVKGKTMEPYRW 57 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 HA+ D+ + L ++G E+V+ N+++YFEP EP++L D I +P +++ + + Sbjct: 58 LHAKQDDIEIEHLSLLNGAGLEMVRVDNQVTYFEPQSEPYSLTTDSIAGPIPEVLFKNVE 117 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 RLS +YDF+ G+ RI+ R +++R+ ++D +Y+Y +W+D ES L ++ ++ GE L Sbjct: 118 RLSGHYDFVLGGKGRISGRAAQLVRIESKDEDKYNYWIWLDMESSLLLKAAYVNHQGEAL 177 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFS----WTPTWLPQGFSEVSS 236 EQ ++ +V + +S + + N P L E + W WLP GF + S Sbjct: 178 EQLQLTHISVTEQPASMLLEILNRNFPTPLPNNSLETLDSNTAKTWKIDWLPAGFELLKS 237 Query: 237 SRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSST-DQMLRTGRRTVSTSVRDNAEIT 295 R L ++N + L+SDG SV + R P L +G TV N +++ Sbjct: 238 DRHKLD-LNNELTDYYLFSDGFVEVSVFIQRPLPGKRLSGSLTSGATTVYVHNGGNFDVS 296 Query: 296 IVGELPPQTAKRIAENIK 313 +VG +P TAK+IAE++ Sbjct: 297 VVGNIPSLTAKKIAESVT 314 >UniRef50_Q2Y876 Sigma E regulatory protein, MucB/RseB n=2 Tax=Nitrosomonadaceae RepID=Q2Y876_NITMU Length = 328 Score = 307 bits (787), Expect = 3e-82, Method: Composition-based stats. Identities = 68/323 (21%), Positives = 134/323 (41%), Gaps = 18/323 (5%) Query: 7 AMSLVTGSLLFSANAS-------ATPASGALLQQMNLASQSLNYELSFISINKQGVESLR 59 SL+ ++ SA A ++P + LQ++ A + NY +F+ ++ +E+ R Sbjct: 6 LSSLLLTVIVQSAFAQNPSSSSPSSPEALNWLQKIAAAPRHYNYVGTFVYSSEGQIETSR 65 Query: 60 YRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDF 119 H + + + +DGP RE+++ +E+ + P + ++ P+L+ Sbjct: 66 IIHLVNEEGEQEKSMVLDGPPREIIRNNDEMRCYLPENKTVVTEKRWLRKVFPALLPQPL 125 Query: 120 KRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGET 179 L Y + R++D ++I + RD RY +WMD + L ++ ++D G Sbjct: 126 INLDHNYVVKKGKQERVSDYASQIIELEPRDDKRYGQKLWMDPNTGLLLKAAVMD-KGRV 184 Query: 180 LEQFRVIAFNVNQDISSSMQTLAKAN-----LPPLLSVPVGEKAKFSWTPTWLPQGFSEV 234 +EQF + +I S+ + L K W P GF ++ Sbjct: 185 VEQFVFTDLKIGGEIDKSLLKSQYSGQAAEWRKTNLVSSTQGSGKLGWQVKDPPPGFKKI 244 Query: 235 SSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPS---STDQML-RTGRRTVSTSVRD 290 +R L + P+ SDGL + SV + ++ + + G + T Sbjct: 245 VEMKRNLSG-KSRPVAHIALSDGLAAVSVFIEPSSGEASSPVEGLYHSRGAINIYTRTLG 303 Query: 291 NAEITIVGELPPQTAKRIAENIK 313 + +T +GE+PP T +I ++ Sbjct: 304 DNRVTAIGEVPPATVMQIGNSVT 326 >UniRef50_Q2SL38 Sigma factor algU negative regulatory protein MucB n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SL38_HAHCH Length = 342 Score = 307 bits (786), Expect = 4e-82, Method: Composition-based stats. Identities = 84/324 (25%), Positives = 139/324 (42%), Gaps = 11/324 (3%) Query: 3 QLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRH 62 + W +SL+ L SA A A+ LQ+M A Q L+Y +FI + S++ H Sbjct: 16 RQWSLVSLLALISLVSAPAQASG-PQEWLQRMLEARQELSYRGAFIYSRGDEMSSMKVFH 74 Query: 63 ARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRL 122 D +L+ MDG RE+++ G+ + PG + L P + + Sbjct: 75 RTQDGVEKERLVAMDGEMREIIRDGDMLICVFPGGKQVRLEQAAYTGPFPGAVLNGGSDV 134 Query: 123 SPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQ 182 Y+ G R+A + V+A+D RYSY +W++ S + ++ L +R GE LE Sbjct: 135 HSVYELRMAGEERVAGHDVLKMAVMAKDQYRYSYYLWLEKNSGMLLKSLLTNRKGEVLEH 194 Query: 183 FRVIAFNVNQDISSSMQTLAKANL----PPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSR 238 F+ + ++ + + WTP WLP+GFS + Sbjct: 195 FQYTVLELGAQVTDQELAPSMPKADVKSVKPEQEEAPDALPEQWTPAWLPKGFSMSPNVT 254 Query: 239 RPLPTMDNMPIESRLYSDGLFSFSVNVNRATPS-STDQMLRTGRRTVSTSVRDN----AE 293 + M + +++Y DGL FS+ V P + R G T + Sbjct: 255 KRNDVMPGD-MRTQVYGDGLTMFSIFVEENNPQAMPEGASRMGATTAYSKHIKQGDMTYV 313 Query: 294 ITIVGELPPQTAKRIAENIKFGAA 317 IT+VGE+P +T KR+A+N+K + Sbjct: 314 ITVVGEVPIETVKRVADNMKSSPS 337 >UniRef50_Q126J7 Putative sigma E regulatory protein, MucB/RseB n=3 Tax=Comamonadaceae RepID=Q126J7_POLSJ Length = 352 Score = 305 bits (781), Expect = 1e-81, Method: Composition-based stats. Identities = 60/301 (19%), Positives = 122/301 (40%), Gaps = 7/301 (2%) Query: 23 ATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRRE 82 + + L +M+ AS+ +Y +F+ + + S + H N+ + ++ + G R Sbjct: 52 ESRSVNDWLMRMHEASKKRSYIGTFVVSSGGAMSSAKVWHVCEGNQQVERVETLTGAPRS 111 Query: 83 VVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCE 142 + + +++ F P + + P L+ + R++ +Y G R+A + Sbjct: 112 IFRHNDQVVTFMPDHKVVRSEKRESLGMFPELLQSTDSRIADFYKMRHDGVERVAGVEAD 171 Query: 143 VIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQD--ISSSMQT 200 V+ +V +D R+ Y +W + + L +++ LD DG+ LEQ ++ + +Q Sbjct: 172 VVMLVPKDSMRFGYRIWTEQKKGLVVKLQTLDADGKVLEQAAFSELQLDAPVKMDQLIQM 231 Query: 201 LAKANLPPLLSVPVGEKAKF--SWTPTWLPQGFSEVSSSRRPLP-TMDNMPIESRLYSDG 257 + K + + + + W GF +S +RP ++SDG Sbjct: 232 MGKVDGYRVEKPVMVKTTASAEGWVLKAPVAGFKPMSCYKRPAANAAPGAEPLQWIFSDG 291 Query: 258 LFSFSVNVNRATPSS--TDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFG 315 L S S+ V + L G T D +TI+GE+P T + A ++ Sbjct: 292 LASVSIFVEPYDRQRHEKESSLSLGATQTLTRQVDAYWVTIMGEVPMATLRHFANGLERK 351 Query: 316 A 316 Sbjct: 352 K 352 >UniRef50_B8GPK4 Sigma E regulatory protein, MucB/RseB n=1 Tax=Thioalkalivibrio sp. HL-EbGR7 RepID=B8GPK4_THISH Length = 324 Score = 304 bits (780), Expect = 2e-81, Method: Composition-based stats. Identities = 74/322 (22%), Positives = 140/322 (43%), Gaps = 11/322 (3%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 + + A+ L+ S + + + ALL +M A +SL+YE +F+ I+ Q E+++ Sbjct: 6 LSRYVLAVGLLASSHAW----ADDHRADALLDRMIEAVRSLSYEGTFVYIHGQKTETMQI 61 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIV-DSLPSLIYTDF 119 H R + +LL + G REV++ + ++ P + LP+ I Sbjct: 62 VHTRDERGERERLLSLTGEPREVIRDEDVLTCVWPASRSVVIEPRRSRLGGLPAAIPDRK 121 Query: 120 KRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGET 179 Y F G RIA C ++++ D RY + + ++ +S + ++ ++LD G T Sbjct: 122 FGPDSPYRFQVEGEQRIAGLSCRTLQIIPNDDLRYGHRLCINEDSGMLLKSEMLDHQGNT 181 Query: 180 LEQFRVIAFNVNQDISSSMQTL---AKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSS 236 +EQF + + + + W +P GF S Sbjct: 182 IEQFMFTSIQFPDYVPDDRFIPVMKGEGFTTHRVDAQSEMNPDPGWRVRDIPDGFRVASV 241 Query: 237 SRRPLPTMDNMPIESRLYSDGLFSFSVNVNRAT--PSSTDQMLRTGRRTVSTSVRDNAEI 294 S+RP+ N P++ + SDGL + SV ++RA+ + ++G ++ Sbjct: 242 SKRPMAANLN-PVQHLVLSDGLATVSVFISRASSLDDLYMGVTQSGALHAMAVPAGEYQV 300 Query: 295 TIVGELPPQTAKRIAENIKFGA 316 T+VGE+P T + IA+++ A Sbjct: 301 TVVGEVPEATIRMIADSVYHEA 322 >UniRef50_Q65QC3 RseB protein n=2 Tax=Pasteurellaceae RepID=Q65QC3_MANSM Length = 326 Score = 302 bits (773), Expect = 1e-80, Method: Composition-based stats. Identities = 115/310 (37%), Positives = 182/310 (58%), Gaps = 5/310 (1%) Query: 6 FAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARL 65 FS + LL +M A LNYE+S++ I +++ RYRH Sbjct: 18 LTALFFILPFSFSVFGQDNLSPKQLLTEMLAAQNKLNYEISYVQIAGAEIDTYRYRHVYN 77 Query: 66 DNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPY 125 + + AQL ++G ++E++QR N ISYF PF++ G I+D+LP+++ DF R+ + Sbjct: 78 EGKSYAQLATLEGGKQEIIQRDNLISYFHSNYSPFSIRGSQIIDNLPNIVNADFSRIEKH 137 Query: 126 YDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRV 185 YDFI++GR RIADRL + +R++ +D RY Y+V+++ ++ L + D+LD+DG LE+FRV Sbjct: 138 YDFINMGRNRIADRLVQTVRILPKDNFRYQYVVFIEEKTHLLLGSDMLDQDGNLLERFRV 197 Query: 186 IAFNVNQDIS-SSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTM 244 + F ++ ++ L+K PP+L K K SW WLPQGF+ +++ L Sbjct: 198 VNFYIDDQMTQPLTDALSKLPTPPVLDKATPPKNKLSWQAGWLPQGFAVLNNY---LTKT 254 Query: 245 DNMPIESRLYSDGLFSFSVNV-NRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQ 303 D IESRLYSDGLFSF++ V N P + + + + G T+ + + E+TI+G++P Sbjct: 255 DEDTIESRLYSDGLFSFTIYVSNNILPENQENVWKQGSFTIYSESMKDKEVTIIGQIPLT 314 Query: 304 TAKRIAENIK 313 TAKRI + IK Sbjct: 315 TAKRIVQEIK 324 >UniRef50_Q47WP0 Sigma-E factor regulatory protein RseB n=1 Tax=Colwellia psychrerythraea 34H RepID=Q47WP0_COLP3 Length = 337 Score = 300 bits (769), Expect = 3e-80, Method: Composition-based stats. Identities = 93/301 (30%), Positives = 164/301 (54%), Gaps = 5/301 (1%) Query: 17 FSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDN-RPLAQLLQ 75 SA + T ++ L++++ + + LN+ SF+ + E + H DN + L + Sbjct: 15 VSAITADTESAKFSLERLSNSLRQLNFSTSFVVVKNNQAEPYHWLHGIGDNEQELEIFTR 74 Query: 76 MDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTR 135 ++GPRR+V+++G +SY EP EP+++ + +PS+ + L Y FISVGR+R Sbjct: 75 LNGPRRDVLRQGKIVSYIEPEQEPYSIISSDVRSPIPSIFRGNISELEESYRFISVGRSR 134 Query: 136 IADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDIS 195 I R+ +++R+V++D R+SY +W+D ++ L +++ +L R G+ LEQ + VN+ ++ Sbjct: 135 ILGRVAQLVRIVSKDKYRFSYWLWLDQKTGLLLKMAVLTRQGQLLEQIQFTHIEVNEQLT 194 Query: 196 SSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNM---PIESR 252 +++ LP ++ + + SW WLPQGFS V S++ L + + +E Sbjct: 195 DNLEQFQLTELPKVVELTQQQNKALSWQVDWLPQGFSVVKSNQHRLNSHNQGNEKAVEFM 254 Query: 253 LYSDGLFSFSVNVNRATPSST-DQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAEN 311 L+SDGL SV VN + + G V + E+ IVG +P TAK+IAE+ Sbjct: 255 LFSDGLVEVSVYVNPSQEKFRAPEYASDGATIVFNHILQGIEVGIVGNIPLATAKKIAES 314 Query: 312 I 312 I Sbjct: 315 I 315 >UniRef50_C4K3Z0 Anti sigma E (Sigma 24) factor, negative regulator n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K3Z0_HAMD5 Length = 317 Score = 298 bits (763), Expect = 2e-79, Method: Composition-based stats. Identities = 137/319 (42%), Positives = 212/319 (66%), Gaps = 3/319 (0%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 M + L+ +L ++ S P +G +LQ+M+ A +SLNYE ++I ++Q ++SLRY Sbjct: 1 MHPFLLFVILLIAALSPNSAGSEQPNAGMMLQEMSTAIRSLNYEFNYIQADEQDIDSLRY 60 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 RH L+ + AQLL+MD R EV Q ++ISYF+ L PFTL G +IVD+ PS++++DF Sbjct: 61 RHVILNGKTFAQLLRMDQLRVEVRQNNDQISYFQSDLTPFTLLGTHIVDAFPSVVFSDFS 120 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 LS YY +I VG+ RIADR+C++IRV+ ++ RYSY +W+D +KLPM+++LL+ +G+TL Sbjct: 121 MLSQYYHYIFVGKMRIADRICQIIRVLPKENNRYSYFIWLDEVTKLPMQINLLNLNGQTL 180 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRP 240 EQF+VI+ N++ +++S +Q L KA +PPL+ +P E F W P WLP GF ++ + Sbjct: 181 EQFKVISLNMDDNLTSFVQNL-KAPVPPLMKLPEEETVNFDWFPKWLPAGFVDIPPNEHQ 239 Query: 241 LPTMDNMPIESRLYSDGLFSFSVNVNRATPS-STDQMLRTGRRTVSTSVRDNAEITIVGE 299 L + SR Y+DGLFSF + V+ +T+ + RRT+ T VRD+ ++T+VGE Sbjct: 240 L-MHKKKFLASRFYTDGLFSFLITVSPVNKKNNTESHFQQSRRTIQTQVRDHIQMTVVGE 298 Query: 300 LPPQTAKRIAENIKFGAAQ 318 +P TAKRIA+N+ + Sbjct: 299 IPLSTAKRIADNLILKINK 317 >UniRef50_P44792 Sigma-E factor regulatory protein rseB homolog n=23 Tax=Pasteurellaceae RepID=RSEB_HAEIN Length = 315 Score = 296 bits (758), Expect = 6e-79, Method: Composition-based stats. Identities = 112/295 (37%), Positives = 183/295 (62%), Gaps = 5/295 (1%) Query: 23 ATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRRE 82 ++ L +M A +LNYE++F+ ++S RYRH + DN+ AQL+ +DG ++E Sbjct: 24 EELSAKQSLDKMTQALDNLNYEIAFVQTTPANMDSFRYRHIKQDNKTYAQLVTLDGRQQE 83 Query: 83 VVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCE 142 ++QR N +SYF+P + FTLN IVD++P+++ +F +LS YDF+ +G+ R+A R + Sbjct: 84 IIQRDNLVSYFQPNAQAFTLNSGNIVDAMPAVVRANFDKLSSDYDFVKLGKDRVAGRFAD 143 Query: 143 VIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLA 202 IR+V +D RY Y+V++D E+ L +R D+LDR+G+ L+QFRV+ ++ + + Sbjct: 144 TIRIVPKDDFRYQYLVFIDEENGLLLRSDMLDREGKLLDQFRVVTLYIDDRLRGLTDYIN 203 Query: 203 KANLPPLLSVPVGEK-AKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSF 261 K +LPPLL E+ + +W+ WLPQGFS + ++ L +N I+S LYSDGLF+F Sbjct: 204 KVSLPPLLKESKNEQSSDITWSAGWLPQGFSLIRYTQEIL---ENEIIDSALYSDGLFTF 260 Query: 262 SVNVNRA-TPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFG 315 ++ V+ + + + G T+ + V EIT +G+LP TAKRI + +KF Sbjct: 261 TLFVSNVGSNDLPENTWKQGAYTIYSEVIGGKEITFIGQLPISTAKRIVQEVKFR 315 >UniRef50_B4F051 Anti sigma E (Sigma 24) factor, negative regulator (Sigma-e factor regulatory protein) n=3 Tax=Enterobacteriaceae RepID=B4F051_PROMH Length = 323 Score = 293 bits (749), Expect = 8e-78, Method: Composition-based stats. Identities = 150/324 (46%), Positives = 213/324 (65%), Gaps = 10/324 (3%) Query: 1 MKQLWFAMSLVTGSLLFSANASATP---ASGALLQQMNLASQSLNYELSFISINKQGVES 57 MK+ W + L+ G L A A P + ALLQ+M +Q+ YELSFI+IN QG+ Sbjct: 1 MKKSWLSALLLAGYLSIPTQALAQPQIGNAEALLQKMGNTTQTATYELSFININSQGIVP 60 Query: 58 LRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYT 117 +RYRHA +D +P+AQL+QMD RRE+VQRGNEISYFEPGL+ F+L ++IVD LP++IY Sbjct: 61 IRYRHALVDGKPVAQLMQMDSTRREIVQRGNEISYFEPGLDAFSLRNEHIVDYLPAIIYQ 120 Query: 118 DFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDG 177 +F L+ YY+FI GRT I D V+RV++++ RY Y++++D E LP+RVDLLD++ Sbjct: 121 NFAELAEYYNFIDAGRTHIGDIPSRVVRVLSKNNDRYEYVLFIDEERYLPLRVDLLDKNN 180 Query: 178 ETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKA-KFSWTPTWLPQGFSEVSS 236 + +EQFRVI N N++I S + +L K N+PPLL +P +A ++W T LP+GF EV Sbjct: 181 DVIEQFRVITANQNKEIISELDSLNKVNMPPLLLIPKATQALNYNWRVTTLPEGFKEVKR 240 Query: 237 SRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSS----TDQMLRTGRRTVSTSVRDNA 292 S + +N +S LYSDGLF FS+ VN++ D+ LR GR T+ T +D Sbjct: 241 SNHQIA--ENEFSQSILYSDGLFDFSIYVNKSGQQLNSPERDKALRYGRNTIYTYDKDGN 298 Query: 293 EITIVGELPPQTAKRIAENIKFGA 316 EIT +G+LP TA++I ++ F Sbjct: 299 EITFIGQLPFITAQKIVNSVVFTK 322 >UniRef50_B4RVL6 Putative anti sigma E (Sigma 24) factor, negative regulator n=1 Tax=Alteromonas macleodii 'Deep ecotype' RepID=B4RVL6_ALTMD Length = 328 Score = 292 bits (747), Expect = 1e-77, Method: Composition-based stats. Identities = 90/302 (29%), Positives = 160/302 (52%), Gaps = 5/302 (1%) Query: 17 FSANASATP-ASGALLQQMNLASQSLNYELSFISI-NKQGVESLRYRHAR-LDNRPLAQL 73 +A+A P ++ L ++ + N+++SF+ + +RH D L QL Sbjct: 25 VTASAETQPQSASQWLAELQNIITNANFQVSFVQTIAGKETVPYLWRHGVMEDGSELEQL 84 Query: 74 LQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGR 133 +GP RE+++ + +S FEP ++P++L +I +PS + ++L+ Y+F++VGR Sbjct: 85 NLQNGPGRELIRINDVVSVFEPDVQPYSLRSKHINGPIPSALLYHPEQLAEAYEFVAVGR 144 Query: 134 TRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQD 193 R+A R + IR+V+RD TR+ Y +W+D S + +++++LD G LEQ +V AF ++ Sbjct: 145 ARVAGRSAQQIRIVSRDNTRFGYQLWLDESSGMLLKLNMLDLQGALLEQIQVTAFAISPT 204 Query: 194 ISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRL 253 + + A+LP +++ W T+LP G E+ R L + +E +L Sbjct: 205 PAEYFSRINAASLPAPMALSTAPARAHKWDVTYLPAGMREIKQDTRRLALTGQV-VEYKL 263 Query: 254 YSDGLFSFSVNVNRATPSSTDQML-RTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENI 312 +SDGL SV V A + + + R T T A++T+VGE+P QTA IA ++ Sbjct: 264 FSDGLVDVSVYVQPADDALGETLALRNEVSTFLTLTDGKAQVTVVGEIPLQTANAIATSL 323 Query: 313 KF 314 + Sbjct: 324 RP 325 >UniRef50_UPI0001AEB8D1 putative anti sigma E (sigma 24) factor, negative regulator n=1 Tax=Alteromonas macleodii ATCC 27126 RepID=UPI0001AEB8D1 Length = 394 Score = 291 bits (746), Expect = 2e-77, Method: Composition-based stats. Identities = 87/298 (29%), Positives = 158/298 (53%), Gaps = 4/298 (1%) Query: 23 ATPASGALLQQMNLASQSLNYELSFISI-NKQGVESLRYRHAR-LDNRPLAQLLQMDGPR 80 ++ L ++ + N+++SF+ + +RH D L QL +GP Sbjct: 95 EPQSANQWLAELQNIITNANFQVSFVQTIAGKETVPYLWRHGIMEDGSELEQLNLQNGPG 154 Query: 81 REVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRL 140 RE+++ + +S FEP ++P++L +I +PS++ ++L+ Y+F++VGR R+A R Sbjct: 155 RELIRVNDVVSVFEPDVQPYSLRSKHINGPIPSVLLYHPEQLAEAYEFVAVGRARVAGRS 214 Query: 141 CEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQT 200 + IR+V+RD TR+ Y +W+D S + +++++LD G LEQ +V AF ++ + + Sbjct: 215 AQQIRIVSRDNTRFGYQLWLDESSGMLLKLNMLDLQGALLEQIQVTAFAISPEPADYFSR 274 Query: 201 LAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFS 260 + A+LP +++ W T+LP G E+ R L +E +L+SDGL Sbjct: 275 INSASLPAPMALSNTPNRAHKWDVTYLPAGMREIKQDTRRLALTGQ-IVEYKLFSDGLVD 333 Query: 261 FSVNVNRATPSSTDQML-RTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFGAA 317 SV V A + + + R T T A++T+VGE+P QTA IA +++ ++ Sbjct: 334 VSVYVQPAEDALGETLALRNEVSTFLTLTDGKAQVTVVGEIPLQTANAIATSLRPVSS 391 >UniRef50_Q15R29 Sigma E regulatory protein, MucB/RseB n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15R29_PSEA6 Length = 333 Score = 291 bits (745), Expect = 2e-77, Method: Composition-based stats. Identities = 93/313 (29%), Positives = 161/313 (51%), Gaps = 5/313 (1%) Query: 7 AMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQ-GVESLRYRHAR- 64 ++ L S A A + ++ L++M+ A +LNY +SF+ + + +RH Sbjct: 20 SVDLPASSHSEPAKAFPSDSAHGWLEKMSHAHSNLNYSISFVLLKPGVDSQPYLWRHGVS 79 Query: 65 LDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSP 124 + QL ++GP REVV+ +++SYFEP + P++L I PS + + Sbjct: 80 ASGVKMEQLNLLNGPGREVVRIDDKVSYFEPNVPPYSLQSRVINGPFPSEFFQQPDEIKD 139 Query: 125 YYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFR 184 YDF+ VGR+R++ R + IR+V++D +R+ VW+D E+ L ++++L+D +G+ LEQ + Sbjct: 140 SYDFVMVGRSRVSGRAAQQIRIVSKDKSRFGMNVWLDQETGLMLKMNLVDLNGQLLEQIQ 199 Query: 185 VIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTM 244 V A +V + + + A LP +L + K W ++P G EV LP Sbjct: 200 VTACHVTEQPDDFFEKIEPAMLPEVLKLRPQTHTKAIWDIAYVPVGMVEVKRDIHRLPIT 259 Query: 245 DNMPIESRLYSDGLFSFSVNVNRATPSSTDQ--MLRTGRRTVSTSVRDNAEITIVGELPP 302 +E + SDGL S+ + + +Q +LR T+ T + +T+VG+LPP Sbjct: 260 GQS-VEYVMLSDGLVDVSIYMRESQNDGINQDILLRHESDTLLTLNQGRLNVTVVGKLPP 318 Query: 303 QTAKRIAENIKFG 315 +TA IA +I Sbjct: 319 ETANHIASSIHLA 331 >UniRef50_A7JWL1 Sigma E regulator RseB n=3 Tax=Pasteurellaceae RepID=A7JWL1_PASHA Length = 327 Score = 290 bits (742), Expect = 4e-77, Method: Composition-based stats. Identities = 100/320 (31%), Positives = 168/320 (52%), Gaps = 5/320 (1%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 +K+ +++ F+ S A L M+ A + YEL +I ES R Sbjct: 5 IKKYLLLFWVISACYTFAWAESTIKTPLAYLTAMSEAHKKSTYELVYILQQGSDTESFRL 64 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 RHA N+ AQLL +D R E++ + N++SY PF+LN I+D+LP+++YTD+ Sbjct: 65 RHAFTHNKEYAQLLNLDHSREEIILKNNKVSYLGYNFRPFSLNSSQILDNLPNVLYTDYA 124 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 L Y F+ G+ RI+DR+ +VIR+ D RY+YI+W+D E+ L ++ +L+ D L Sbjct: 125 NLK-GYAFLDAGKDRISDRITKVIRMKPNDTLRYAYILWIDEETHLLLKSQVLNMDNLVL 183 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKF-SWTPTWLPQGFSEVSSSRR 239 E+FRV+ + ++ + LP L +V E K W WLP GF + Sbjct: 184 EEFRVLQLYQSPELDRIANVIESLMLPTLTTVKKEEFPKSDGWQVKWLPTGFRLIQQQTV 243 Query: 240 PLPT--MDNMPIESRLYSDGLFSFSVNVNRATP-SSTDQMLRTGRRTVSTSVRDNAEITI 296 T +++ ++SR+YSDGL + ++ + + S + + G+ T+ ++ +I I Sbjct: 244 TGATYQVESEYVDSRVYSDGLSTLTIYIMPSQGVSFNEYAWQQGKLTILNQTINDRDIVI 303 Query: 297 VGELPPQTAKRIAENIKFGA 316 +G++P Q+AK+I NI F Sbjct: 304 IGDVPLQSAKQIMNNIGFKE 323 >UniRef50_B8F3K5 Periplasmic negative regulator of sigmaE n=2 Tax=Haemophilus parasuis RepID=B8F3K5_HAEPS Length = 321 Score = 290 bits (742), Expect = 5e-77, Method: Composition-based stats. Identities = 119/320 (37%), Positives = 180/320 (56%), Gaps = 8/320 (2%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 MK+ V+ L + A A L MN A Q+LNYE +I V SLRY Sbjct: 1 MKKYITLF--VSLFLSITGFAQPLSTPLAYLTAMNKAHQTLNYEQLYIFQKGDDVTSLRY 58 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 RHA + + AQLL +D R E++ R + + YF +PF+L +I+D P+++Y++F Sbjct: 59 RHAYDNGQEYAQLLHLDATREEMILREDVVGYFG-DYQPFSLKTPHILDDFPTVVYSNFS 117 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 +L Y F+ G++R+ADR+ VIR+V RD RY Y++W+D E+ L ++ LLDRD L Sbjct: 118 QL-EGYAFLDNGKSRVADRIARVIRIVPRDDFRYQYMLWIDEENHLLLQSHLLDRDNNVL 176 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKF-SWTPTWLPQGFSEVSSSRR 239 EQFR I V++ + ++ + LP LL V + K W W+P GF +V+S ++ Sbjct: 177 EQFRTIQSVVDEQLLYIVEPIRTLILPTLLQTKVHSELKPLEWQLKWVPNGFKQVASGQQ 236 Query: 240 PLPTM--DNMPIESRLYSDGLFSFSVN-VNRATPSSTDQMLRTGRRTVSTSVRDNAEITI 296 L + + IESRLYSDGLFSF+V V S DQ R G+ +V + + ++ I Sbjct: 237 NLSEVLAQDEQIESRLYSDGLFSFTVYLVQNKGISFQDQFWREGKTSVYSQTIGDKDVII 296 Query: 297 VGELPPQTAKRIAENIKFGA 316 VGE+P +A+ I + I+F + Sbjct: 297 VGEIPLASARHIVQEIEFSS 316 >UniRef50_Q0A8Z7 Sigma E regulatory protein, MucB/RseB n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A8Z7_ALHEH Length = 339 Score = 289 bits (739), Expect = 1e-76, Method: Composition-based stats. Identities = 75/313 (23%), Positives = 126/313 (40%), Gaps = 12/313 (3%) Query: 7 AMSLVTGSLLFSANASATPAS-GALLQQMNLASQSLNYELSFISINKQGVESLRYRHARL 65 L+ + A A LL+++ + L+Y + + +E+LR H Sbjct: 18 LAVLMLALISVGAWADQGDNPGLRLLERIGEQTPQLHYHGILVYRHGGDMETLRIIHRGG 77 Query: 66 DNRPL-AQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSP 124 + + G REV+++ +E+ P E + + + + + + L Sbjct: 78 AEHERSERFYTLTGIPREVIRKPDEVICILPDAEAVVVGRRQLRNPIAQALPRYTEALQE 137 Query: 125 YYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFR 184 Y+ G R+ADR + + +V RD RY + +W+D L +R DLLD + LEQ Sbjct: 138 AYEVTLAGEGRVADRDAQQVLIVPRDDLRYGHRLWIDEAYGLLLRADLLDEHQQVLEQVM 197 Query: 185 VIAFNVNQDISSSMQTLA------KANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSR 238 V + + + P + E+ + W +P GF +S + Sbjct: 198 FTEVTVVEAVPDAWLEPGISGESFTWVRPADRADAAPEQRR--WQVAEVPPGFRLISHRQ 255 Query: 239 RPLPTMDNMPIESRLYSDGLFSFSVNVNR-ATPSSTDQMLRTGRRTVSTSVRDNAEITIV 297 R + D P+E YSDGL S SV V+ A ++ R G RD +T+V Sbjct: 256 RQIAGHDP-PVEHLHYSDGLASVSVYVSPQAADKVRERAARMGLMGAVRVPRDGFTVTVV 314 Query: 298 GELPPQTAKRIAE 310 GE+P T AE Sbjct: 315 GEVPRATLHLFAE 327 >UniRef50_Q3SH43 Putative Sigma E regulatory protein, MucB/RseB n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SH43_THIDA Length = 318 Score = 287 bits (735), Expect = 4e-76, Method: Composition-based stats. Identities = 73/315 (23%), Positives = 135/315 (42%), Gaps = 6/315 (1%) Query: 3 QLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRH 62 + + G +L S A A ++ LQ+ A++ NY ++ + VE LR H Sbjct: 8 RQAVLAAGFAGLMLLSGLARAN-SALEWLQRAASAAKEQNYSGIYVYHHGDEVEVLRVLH 66 Query: 63 ARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRL 122 R + MDG +R ++ +++ + L + P+ + L Sbjct: 67 RNDGRREQEKTEVMDGTQRHFLRVNSDVYCHLADGKQVRLERNASRRFFPAFLPARAAGL 126 Query: 123 SPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQ 182 + Y+ G R+A R C+V+ + RDG R+++ +W+D+ + LP++ +++ DGE + Sbjct: 127 AELYEVKLGGVERVAGRPCQVVMLEPRDGYRHAFQLWLDSRTGLPLKSRIVNSDGEVVSM 186 Query: 183 FRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLP 242 F + + +S+ + + V +G++ W+ T P GF V + R LP Sbjct: 187 FVFSEVQIGRPPDASLFR-NELAGKQVQQVSLGQRIDLPWSVT-PPPGFERVQEAVRTLP 244 Query: 243 TMDNMPIESRLYSDGLFSFSVNVNRATPS--STDQMLRTGRRTVSTSVRDNAEITIVGEL 300 N P+ ++SDGL S+ + A P S + G V D IT VGE+ Sbjct: 245 G-RNTPVTHLVFSDGLSVLSMFIEPADPGVPSLQGLSAEGAIGVYARALDGHTITTVGEV 303 Query: 301 PPQTAKRIAENIKFG 315 P +++ Sbjct: 304 PNLALIETGNSVRRK 318 >UniRef50_C5SBU2 Sigma E regulatory protein, MucB/RseB n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SBU2_CHRVI Length = 337 Score = 286 bits (731), Expect = 1e-75, Method: Composition-based stats. Identities = 78/327 (23%), Positives = 135/327 (41%), Gaps = 17/327 (5%) Query: 1 MKQLWFAMSLVTGSLLFSA----------NASATPASGALLQQMNLASQSLNYELSFISI 50 + W A+ L L F A A + + LL +M A +SL+YE + + + Sbjct: 15 LASYWLALGLCC-LLPFQAVVAEATASPDTAESRLSPKVLLARMTEAVRSLSYEGTLVYL 73 Query: 51 NKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDS 110 ++ +E+L H D + +L+ + GP R V + ++ +P ++ Sbjct: 74 HQNQLETLSLDHRIADGQVEERLIALSGPIRAVASGKDRVNCVLTDGQPISVERQ--GGR 131 Query: 111 LPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRV 170 D L +Y +GR RIA R EV+ ++ RD RY Y +D E+ LP++ Sbjct: 132 FLDTEGIDPGALQDHYSVEYLGRARIAGRETEVVGILPRDDLRYGYRFHIDRETALPLKS 191 Query: 171 DLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQG 230 DL+DR E LEQ + +N + +T + + W +P G Sbjct: 192 DLIDRHQEPLEQLMFTSIKLNAPAAPGSETPPDP--VRSVRGAPATRPSSQWRFEPMPAG 249 Query: 231 FSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRD 290 F V + + D +E L++D L S+S+ + A+ + G + D Sbjct: 250 FELV--MQHQIDQADGSRVEHFLFTDRLSSYSIYIEPASDDGLEGGANIGSVHAAGRRFD 307 Query: 291 NAEITIVGELPPQTAKRIAENIKFGAA 317 +IT VGE+P T + ++ A Sbjct: 308 EHQITAVGEVPLVTVQAAIASVHRAAP 334 >UniRef50_A3Y8F0 MucB/RseB n=1 Tax=Marinomonas sp. MED121 RepID=A3Y8F0_9GAMM Length = 317 Score = 284 bits (728), Expect = 2e-75, Method: Composition-based stats. Identities = 70/316 (22%), Positives = 132/316 (41%), Gaps = 10/316 (3%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 ++++ + L+ S A P L+ +M A +L+YE F+ + + S++ Sbjct: 3 LRRISLVTITLVSLLVTSVKAQENP-GLVLMNRMVEAFSTLSYEGVFVRSHDSHMNSMQV 61 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 RH+ +D LL +DG + EV++ + + P + F N D I + + Sbjct: 62 RHSVIDGVEYESLLDLDGEKIEVIRIDDSVICVYPNM-SFANNADPITTPFKRFEEFNGE 120 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 RL Y+F+ + +A R + + + RD RY + W+D E+ ++ D L G+ L Sbjct: 121 RLLKGYNFVVTKQGLVAGRRAQKLELRPRDQYRYGHEFWLDIETGFLLKHDTLKSSGKIL 180 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRP 240 ++ + + NV+ ++S + + + W WLP GF+ V R Sbjct: 181 DRVQFTSLNVSPNLSKNDFVPRMGTYAEHVIEVTPKSIPSHWVFDWLPAGFAPVWRGARQ 240 Query: 241 LPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVR----DNAEITI 296 + +M L SDG+ S S+ + S ++ G +T Sbjct: 241 INDNASM----MLLSDGMTSVSIFIESTKESKPLTVMSMGSTIAGEKTSMMNGKPFLLTA 296 Query: 297 VGELPPQTAKRIAENI 312 VGE+P T +++ I Sbjct: 297 VGEVPDATIRKLLSVI 312 >UniRef50_Q2KW13 Sigma-E factor regulatory protein n=5 Tax=Bordetella RepID=Q2KW13_BORA1 Length = 341 Score = 283 bits (725), Expect = 5e-75, Method: Composition-based stats. Identities = 67/311 (21%), Positives = 123/311 (39%), Gaps = 13/311 (4%) Query: 15 LLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLL 74 A ++ P LL + A+++ +Y F+ ++S R H +L Sbjct: 32 GTARAQSAPLPDPVQLLADIQQAARTQDYAGVFMYQQGDTMQSSRLVHIVDGTGERERLE 91 Query: 75 QMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGR- 133 +DG RE ++ + P E L D P L+ D K L+ +Y + + Sbjct: 92 ILDGQPREYLRHNENVQCLIPEHETVLLERRR-GDRFPGLLLGDPKDLTKHYVIRAESKL 150 Query: 134 TRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQD 193 R+ADR C I + RD RY Y + D ++ L ++ +D +EQ + V D Sbjct: 151 HRVADRQCRPISIEPRDALRYGYRLCADVDTNLLLKAQTVDGKRGVVEQVSFSSLRVGSD 210 Query: 194 IS--SSMQTLAKANLPPLLS-VPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIE 250 + S + + + + A W P+GFS V R + + Sbjct: 211 VDAGSLNSRWNTRDWRIVEPDMKPVDLAALGWRIPA-PEGFSPVMQVTRQMG---KGTVS 266 Query: 251 SRLYSDGLFSFSVNVNRAT----PSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAK 306 + SDGL + SV + +++ G + + + +T++GE+P T + Sbjct: 267 QVVLSDGLAAISVFIEPYDGTRHHHPPAGLVQRGSINIYGTRIADYWMTVLGEVPAATLE 326 Query: 307 RIAENIKFGAA 317 +A+N ++ A Sbjct: 327 TLAQNTEYVPA 337 >UniRef50_C5CSF0 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Variovorax paradoxus S110 RepID=C5CSF0_VARPS Length = 356 Score = 283 bits (724), Expect = 7e-75, Method: Composition-based stats. Identities = 69/320 (21%), Positives = 127/320 (39%), Gaps = 17/320 (5%) Query: 10 LVTGSLLFSANASATPASG---ALLQQMNLASQSLNYELSFISIN-KQGVESLRYRHARL 65 L SA A P LQ+M+ ++ NY +F+ + S R H R Sbjct: 33 LANAKGTASAQAGDAPPPMSVVEWLQRMHTGARQRNYIGTFVVSAAGGDLSSARIWHVRD 92 Query: 66 DNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPY 125 + + ++ + GP R +R + + F P + + +D P+L + + Sbjct: 93 GDLQIERIEALSGPPRSTFRRNHHVMTFLPEAKVVKVEKRENLDLFPNLPDKPDSSIGDF 152 Query: 126 YDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRV 185 YD +VG+ R+A +V+++V DG R+ Y +W + S L +++ +D + +EQ Sbjct: 153 YDVRAVGKDRVAGFDADVVQLVPHDGLRFGYRIWSERRSGLVVKLQTVDAESRVVEQSAF 212 Query: 186 IAFNVNQDISSS--MQTLAKANLPPLLSVPVG--EKAKFSWTPTWLPQGFSEVSSSRRPL 241 ++ I + Q ++ + + + + W GF S RRP Sbjct: 213 SELQLDAPIKAQALAQMMSNTSGYRVEKLELERTSAQDEGWVLKAPVAGFKPRSFYRRPA 272 Query: 242 PTMDNMPIE---SRLYSDGLFSFSVNVNRATPS--STDQMLRTGRRTVSTSVR----DNA 292 + + +SDGL S S+ + R D +L G + Sbjct: 273 GSDSKAGQDRTVQWTFSDGLASVSLFIERYDEKRAPRDGVLTIGATNAIRRRLPEPASDW 332 Query: 293 EITIVGELPPQTAKRIAENI 312 +T VGE+P QT A+++ Sbjct: 333 WLTAVGEVPQQTLNAFAQSL 352 >UniRef50_A1SR26 Sigma E regulatory protein, MucB/RseB n=2 Tax=Psychromonas RepID=A1SR26_PSYIN Length = 335 Score = 283 bits (723), Expect = 7e-75, Method: Composition-based stats. Identities = 93/332 (28%), Positives = 172/332 (51%), Gaps = 19/332 (5%) Query: 1 MKQLWFAMSLVTGSLLFSANAS----------------ATPASGALLQQMNLASQSLNYE 44 MK L+++ +L+T + A A+ + LQ M A ++LNYE Sbjct: 1 MKLLFYSKTLITAVFILIAGAAFSVQATEMSNDQTVKKDNITAIEYLQLMQTAYKNLNYE 60 Query: 45 LSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNG 104 + +++ K VE + H ++ +A ++G RE +Q +ISYFE G +P+TL Sbjct: 61 ILYLNNLKNTVEPKQLLHGVINQEEIAYFRYLNGAMRESLQYLQKISYFEQGSQPYTLQS 120 Query: 105 DYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTES 164 ++ ++ + Y++I +G+ RIA + IR++++D RYSYIVW+D ++ Sbjct: 121 TRNQSVFANIANFNYDKGLDSYEYIILGKGRIAGKTAMAIRMISKDQYRYSYIVWIDLDT 180 Query: 165 KLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFS-WT 223 LP+R+D ++ L+Q V++ V++ ++ +++L+ LP L + + S W Sbjct: 181 HLPLRLDTINSSNIILDQIMVVSLKVSEQVNPWLESLSNQKLPELFHLSQTSNLQASLWK 240 Query: 224 PTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVN--RATPSSTDQMLRTGR 281 WLP GF+ V + L +N P+ + +DG+ S SV ++ + T + ++ G Sbjct: 241 VDWLPAGFNIVKDDQHKLVMYENEPVSYIMLNDGIVSVSVYISAKKTTSEQQQKTIQRGA 300 Query: 282 RTVSTSVRDNAEITIVGELPPQTAKRIAENIK 313 + T ++N EI ++GE+P TAKR+ E+I Sbjct: 301 TVLYTDQKNNFEINVIGEIPVATAKRLIESIS 332 >UniRef50_A0YCK6 Sigma factor algU negative regulatory protein MucB n=1 Tax=marine gamma proteobacterium HTCC2143 RepID=A0YCK6_9GAMM Length = 331 Score = 282 bits (722), Expect = 1e-74, Method: Composition-based stats. Identities = 68/327 (20%), Positives = 138/327 (42%), Gaps = 25/327 (7%) Query: 7 AMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLD 66 + A + L +M+ + + L+Y +F ES R H+ +D Sbjct: 15 LFVFACLIMPAGGLVYADDSPQIALSRMSHSFRELDYHGTFSFQRGSSTESFRIAHSVID 74 Query: 67 NRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYY 126 +L +DG +RE+V+RG+ ++ PG + + L + + +Y Sbjct: 75 GEEFERLEYLDGEKREIVRRGHHLNCIHPGHKLL----RFYQQQQAQLGSSANAGVGSFY 130 Query: 127 DFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVI 186 +F G R+A R ++++ +D R+ + + +D E+ L +R +L+ LE+F+ + Sbjct: 131 EFAVNGTGRVAGREVVNLQIIPKDTHRFEHHLSLDKETGLLLRTELIGPGKTVLERFQFV 190 Query: 187 AFNVNQDISSSMQTLAKANL------PPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRP 240 + + ++ A A+ P + + G WT W+P GF+ Sbjct: 191 EITIGEPLAGEQFVDAGASYQAYHTEPSVTANVAGNTVGDGWTVQWMPTGFTST------ 244 Query: 241 LPTMDNMPIESRLYSDGLFSFSVNVNRATP-----SSTDQMLRTGRRTVSTS----VRDN 291 + + + + ++DGL FSV + + + G T T Sbjct: 245 VANVKFVTGDIATFTDGLTVFSVFLESDVDLNLVQRGLEGRAQKGATTAYTRLLVLADRP 304 Query: 292 AEITIVGELPPQTAKRIAENIKFGAAQ 318 IT+VGE+P QTA++IA++++ +++ Sbjct: 305 HRITVVGEIPAQTAQQIAQSVRLVSSR 331 >UniRef50_Q0K8M7 Negative regulator of sigma24 activity n=10 Tax=Burkholderiaceae RepID=Q0K8M7_RALEH Length = 359 Score = 282 bits (721), Expect = 2e-74, Method: Composition-based stats. Identities = 67/311 (21%), Positives = 124/311 (39%), Gaps = 19/311 (6%) Query: 26 ASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARL-DNRPLAQLLQMDGPRREVV 84 + A L +++ A+Q NY + I + + R +H + +L +DG REV+ Sbjct: 47 DATAWLNKIHKAAQRENYVGTLIYQRGSVMHASRIQHYSDLVHNEYERLETLDGKPREVL 106 Query: 85 QRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVI 144 ++ + + P + + D P+L+ T+ + YD + R+A CEV Sbjct: 107 RQNDVVHSLIPEAKLVVVEKQEAKDRFPALLATNKNDVLDLYDMRKMPAERVAGMECEVF 166 Query: 145 RVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQD-----ISSSMQ 199 + D RY+ +W + S L MR + G+ LEQ + I +++ Sbjct: 167 ALEPHDAARYAVRLWAEKNSGLLMRAQTIGDGGKVLEQVAFSQVQIGVPSEKQHILGAIK 226 Query: 200 TLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMP----------I 249 + N + P A W+ +GF ++ RRPL + + Sbjct: 227 NSSSWNRYEVTYQPTN-IADEGWSIAVPLKGFQKIREVRRPLGELRAPAPGNARGQVFEV 285 Query: 250 ESRLYSDGLFSFSVNVNRATPS--STDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKR 307 +YSDGL SV + + + + G V + IT+VGE+P T ++ Sbjct: 286 LQVVYSDGLTGLSVFIEPVSEQRVRREGVAALGATQVVVRRIADFWITVVGEVPASTVRQ 345 Query: 308 IAENIKFGAAQ 318 A +++ + Sbjct: 346 FATAVEYRPPK 356 >UniRef50_C1DQR7 Sigma factor algU negative regulatory protein MucB n=2 Tax=Azotobacter vinelandii RepID=C1DQR7_AZOVD Length = 317 Score = 281 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 73/321 (22%), Positives = 140/321 (43%), Gaps = 16/321 (4%) Query: 5 WFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHAR 64 +F++ L+ GS+ S A+ + L ++ A Q +++ F+ + H Sbjct: 3 FFSLLLLVGSMAMSVQAA---DAQNWLSRLLKAEQRQSFQGVFVYERNGSFSTHAIWHQA 59 Query: 65 --LDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRL 122 D +LL++DG EV++ + + + G+ P D ++L Sbjct: 60 GQNDGESRERLLRLDGAPVEVMRVDGRLKCGSSAVADQLIEGE---GPWPPR-PLDPQKL 115 Query: 123 SPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQ 182 + +Y+ VG +R+A R V+ ++ RD RY + + +D E+ LP++ LL+ G+ LE+ Sbjct: 116 AEWYEIRMVGESRVAGRSAVVLTILPRDQYRYGFELHLDRETSLPLKSLLLNEKGQLLER 175 Query: 183 FRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLP 242 + + + ++ A P+ + + +W WLP GF+ S +P P Sbjct: 176 LQFTQLDTSTPLTKDKLEPGPA-CQPVEVLQTSTPKQGAWRSEWLPPGFTLRSMHTQPSP 234 Query: 243 TMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRT-GRRTVSTSVR----DNAEITIV 297 + I +Y DGL FSV + + + G V + + +T++ Sbjct: 235 -VSGENITYLMYGDGLARFSVFIEPLHSALVEDARSQLGPTVVVSKRISTADGDMMVTVI 293 Query: 298 GELPPQTAKRIAENIKFGAAQ 318 GE+P TA+RI +I+ Q Sbjct: 294 GEVPLGTAERIVLSIRASEEQ 314 >UniRef50_Q608M1 Putative sigma-E factor regulatory protein n=1 Tax=Methylococcus capsulatus RepID=Q608M1_METCA Length = 332 Score = 281 bits (719), Expect = 2e-74, Method: Composition-based stats. Identities = 78/305 (25%), Positives = 128/305 (41%), Gaps = 5/305 (1%) Query: 18 SANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMD 77 + A L M A L+Y + V + + H+ + +L ++ Sbjct: 28 TPQTLGARAGVEWLTGMREAMSRLSYRGRVAYLKDDKVNGMEFVHSMANGVEHERLTSLN 87 Query: 78 GPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIA 137 P RE+V+ G+ + +F P + + S + F L YY F+ + +A Sbjct: 88 SPMREIVRDGDRVQFFFPETKSVMTERVPVSRSFLVDLPESFVGLCDYYAFLVGDQEYVA 147 Query: 138 DRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSS 197 R + I +V D RY VW+DTES+LP+R +LLD + + +EQ I+ V+ + Sbjct: 148 QRHTQTIEIVPVDDYRYGRKVWIDTESRLPLRFELLDENSKPVEQMVFISLEVSGEAPGR 207 Query: 198 MQTLAKANLPPLLSVPVGE---KAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLY 254 T A+ E W+ +P GF SR P + PIE L Sbjct: 208 EVTPMPASGDYSEQSSNREIIPIEAMDWSLDSVPVGFRISGYSRVQHPPL-RHPIEHILL 266 Query: 255 SDGLFSFSVNV-NRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIK 313 SDGL S S+ V +++ + G T D +T++GE+PP+T IA I+ Sbjct: 267 SDGLSSVSIYVDEPKDEPFVEKLKKIGAVNAYTRKIDGFVVTVMGEVPPKTVHMIANGIQ 326 Query: 314 FGAAQ 318 ++ Sbjct: 327 HQKSK 331 >UniRef50_A0KGE8 Sigma-E factor regulatory protein RseB n=2 Tax=Aeromonas RepID=A0KGE8_AERHH Length = 354 Score = 281 bits (718), Expect = 3e-74, Method: Composition-based stats. Identities = 101/303 (33%), Positives = 166/303 (54%), Gaps = 7/303 (2%) Query: 20 NASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGP 79 ++ ++ ALLQQM A N+ELS + + +E +R+ H +D + +A L +DG Sbjct: 47 ASADDKSAEALLQQMQSAVSQQNFELSMVKARQGRLEPIRFSHGVIDGKEVAHLSYLDGK 106 Query: 80 RREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADR 139 E +QR +E ++FE EP+TL G SL+ R+ YD + GR+R A Sbjct: 107 TIEYLQRQDEYTFFENTHEPYTLKGARFPGVWASLVRMPLPRVLESYDPVLAGRSRAAGL 166 Query: 140 LCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQ 199 + +V+R+V ++ +Y +++W+D +S L +RVD++DR+G +EQ + + + + Sbjct: 167 VAQVVRLVPKEADKYGFVLWIDEQSHLLVRVDMVDREGNLVEQVLGVDLDRLPAPAPWLV 226 Query: 200 TLAKANLP---PLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSD 256 LA + LP L + + +W TWLP+GF +S R L T ++P++ + SD Sbjct: 227 KLAGSKLPQALALEDAYPAPQQQLNWHLTWLPEGFKVLSRDRHQLVTT-SLPVDYMMLSD 285 Query: 257 GLFSFSVNVNRATPSS--TDQMLRTGRRTVSTSVRD-NAEITIVGELPPQTAKRIAENIK 313 GL SV V R P Q++R G ++ + V D EIT+VGE+P TAKRIAE+++ Sbjct: 286 GLVDLSVYVARVDPKQAVRQQLIRQGATSLVSYVNDVGVEITVVGEVPADTAKRIAESVQ 345 Query: 314 FGA 316 A Sbjct: 346 PLA 348 >UniRef50_C5S2D4 Periplasmic negative regulator of sigmaE n=2 Tax=Actinobacillus minor RepID=C5S2D4_9PAST Length = 318 Score = 281 bits (718), Expect = 3e-74, Method: Composition-based stats. Identities = 107/321 (33%), Positives = 178/321 (55%), Gaps = 10/321 (3%) Query: 1 MKQL-WFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLR 59 MK++ F ++L+ S S + LLQ M A ++ NYEL +I +ES + Sbjct: 1 MKKINTFYLALLWCFSSISWATST--SPIQLLQNMVSAHKNTNYELRYILQQNNDIESFQ 58 Query: 60 YRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDF 119 YRH + AQLL++D R E++ R N +SY +PF+L +I+D+LP+++YTDF Sbjct: 59 YRHTTQSYKEFAQLLRLDNSREEIILRDNTVSYLGLTFKPFSLKSSHILDNLPAILYTDF 118 Query: 120 KRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGET 179 +L Y F +G++R+ADR+ ++++ D +RY Y +W+D E+ L ++ L D +G+ Sbjct: 119 SKLKD-YQFTLLGKSRVADRIANIVKIAPSDNSRYQYTLWIDDENSLLLKSHLQDHEGQI 177 Query: 180 LEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEK---AKFSWTPTWLPQGFSEVSS 236 LEQF+VI+ V ++ L LPP++ + E+ +W WLP GF V Sbjct: 178 LEQFKVISQYVGNELLYVTPYLESLKLPPVIDTSLSEQNIKQDINWKLNWLPSGFYLVKG 237 Query: 237 SRRPL--PTMDNMPIESRLYSDGLFSFSVNVNRATP-SSTDQMLRTGRRTVSTSVRDNAE 293 ++ T +ES+LYSDG+FSF+V V S +Q + G T+ + ++ Sbjct: 238 LKQGFITDTEKITKLESQLYSDGIFSFTVYVFPTEELSFNEQFFKQGNLTIFSHTVEDKN 297 Query: 294 ITIVGELPPQTAKRIAENIKF 314 I ++G++P ++AK+I NI F Sbjct: 298 IVLIGDIPTESAKKIVFNITF 318 >UniRef50_B9ZJG1 Sigma E regulatory protein, MucB/RseB n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJG1_9GAMM Length = 327 Score = 280 bits (716), Expect = 5e-74, Method: Composition-based stats. Identities = 71/324 (21%), Positives = 133/324 (41%), Gaps = 16/324 (4%) Query: 6 FAMSLVTGSLLFSANASATP-ASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHAR 64 + L +L A A + L++M + + +Y+ +F+ ++++R H Sbjct: 5 LPLVLAATALCLPAQVLADEASPSEWLERMTTSLHAESYQGTFVLQRDDRIDTIRVVHVA 64 Query: 65 LDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSL-PSLIYTDFKRLS 123 D +L + G RE+++ + +S + +GD L P+ + Sbjct: 65 EDGGYRERLETLTGAEREILRSVDRLSAIKGARGA---SGDGAQSPLGPAGAPVSLLQEH 121 Query: 124 PYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQF 183 Y G R+A C +I ARD RYS+ + +S LP+ +L D G+ LE+ Sbjct: 122 DLYSLDIQGLDRVAGYPCTLILARARDALRYSHRYCLHMDSALPLLSELYDPKGKLLERL 181 Query: 184 RVIAFNVNQDISSSMQTL--AKANLPPLLSVPVGEKAKF-------SWTPTWLPQGFSEV 234 ++ +I+ S +A + + +K ++ W LP GF V Sbjct: 182 AFTDLELSGEIAESELEPTTDQAEHIEVRADRGHKKPQWDDDNGLGGWKFGELPPGFQAV 241 Query: 235 SSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRAT-PSSTDQMLRTGRRTVSTSVRDNAE 293 +++ R L + + SDGL S SV V A S + R G + V + Sbjct: 242 AATERSL-GNGDEISRHFVLSDGLASVSVYVEPADGEKSFEGTTRAGATHAAARVMAGHQ 300 Query: 294 ITIVGELPPQTAKRIAENIKFGAA 317 +T VG++P T +++ + + + A Sbjct: 301 VTAVGDVPHVTVQQVLDAVYYQGA 324 >UniRef50_Q0VP13 Negative regulator for alginate biosynthesis n=2 Tax=Alcanivorax RepID=Q0VP13_ALCBS Length = 326 Score = 280 bits (716), Expect = 5e-74, Method: Composition-based stats. Identities = 84/328 (25%), Positives = 148/328 (45%), Gaps = 15/328 (4%) Query: 1 MKQLWFAMSLVTGSLLFS--ANASATPASGALLQQMNLASQSLNYELSFISINKQGVESL 58 ++ L F+++L + + S A A+ +PA LQ M A++SLNY F+ V ++ Sbjct: 3 LRVLAFSLTLCSPVMALSEVALANTSPAQDQ-LQSMAQANRSLNYTGRFLYQFGAEVSTM 61 Query: 59 RYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTD 118 HA + R +L +DG EV++RG+E+ P +N + P + Sbjct: 62 EVSHAVIGGREFQRLTHLDGRLVEVLRRGDEVVCLHPNGTLTRINRKHSG---PLALGDR 118 Query: 119 FKR-LSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDG 177 R + Y+ + G R+A R +RV D RY Y +W+D +S L ++ +++D G Sbjct: 119 IARDVPAQYNILVDGDGRVAGRATTRMRVAPLDTYRYGYRLWLDNDSSLLLKSEIVDGSG 178 Query: 178 ETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLS--VPVGEKAKFSWTPTWLPQGFSEVS 235 LE+ ++ + ++ ++ + L + S W+P GF+ V Sbjct: 179 VALERVEFVSLTLAAPLTEQDFSIPETVKESDLKPLEDSHPSHRLSVEAQWMPPGFTSVD 238 Query: 236 SSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSS-TDQMLRTGRRTVSTSV----RD 290 R D P+ ++ YSDGL +F+V V S + + R G + Sbjct: 239 QDWRQS-GSDREPVAAQGYSDGLAAFTVFVEAVDGGSVEEGVSRVGPTVAVSRRLTAPSG 297 Query: 291 NAEITIVGELPPQTAKRIAENIKFGAAQ 318 +T+VGE+P TA+R+ E I+ +Q Sbjct: 298 AYLVTLVGEVPQSTAERVIEGIRVRDSQ 325 >UniRef50_A1WT21 Sigma E regulatory protein, MucB/RseB n=1 Tax=Halorhodospira halophila SL1 RepID=A1WT21_HALHL Length = 329 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 81/326 (24%), Positives = 129/326 (39%), Gaps = 15/326 (4%) Query: 3 QLWFAMSLVTGSLLFSANAS----------ATPASGALLQQMNLASQSLNYELSFISINK 52 + WF +L+ L + AN A L +M A +YE F+ Sbjct: 6 RAWFLRALLCAGLFWIANGQVALAEGTDRGAGEEGREALNRMVEALDQHSYEGIFVYARA 65 Query: 53 QGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLP 112 VE++ H D+ +L + G RE+++ P + L G +V SL Sbjct: 66 GVVETVHIVHRAGDSGRHQRLEMLTGSHREMIRTPEGALLAGPIAKGDRLRGSGVVTSLG 125 Query: 113 SLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDL 172 Y G R+A R VI V D RY + +W+D ES LP+ L Sbjct: 126 EGWPRADSISEDLYRIQLQGEGRVAGRPTTVIAVEPLDQLRYGHRLWVDEESGLPLHAQL 185 Query: 173 LDRDGETLEQFRVIAFNVNQDISSSMQTL---AKANLPPLLSVPVGEKAKFSWTPTWLPQ 229 LD +E+ +F + DI + A+ + L+ + + W +P Sbjct: 186 LDGR-RVIERLLFTSFTLRDDIDAEELEPVGEAQRRVERRLAEESDDSGEPEWEVIDVPA 244 Query: 230 GFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVR 289 GFS ++ R P P PIE L+SDGL S SV + P + R G Sbjct: 245 GFSRIAHGRIPSPEPGQDPIEHLLFSDGLASVSVYIAP-EPGGNEGQARAGALHAYERPV 303 Query: 290 DNAEITIVGELPPQTAKRIAENIKFG 315 ++ ++T +G++P +T +R A + Sbjct: 304 EDHQVTAIGDVPAKTVERFARQTRRR 329 >UniRef50_A2SDG7 Sigma E regulatory protein, MucB/RseB n=1 Tax=Methylibium petroleiphilum PM1 RepID=A2SDG7_METPP Length = 340 Score = 278 bits (712), Expect = 1e-73, Method: Composition-based stats. Identities = 67/338 (19%), Positives = 127/338 (37%), Gaps = 29/338 (8%) Query: 7 AMSLVTGSLLFSANASATPASGA-------LLQQMNLASQSLNYELSFISINKQGVESLR 59 A+ L+ L + A A L +++ A+ N++ +F+ V S R Sbjct: 3 AVVLMAALLPSATRAQAGGDPLVEARDARYWLARIHEAAGKRNFQGTFVVTAAGSVASSR 62 Query: 60 YRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDF 119 H ++ +DG R+V + + + P + + P L+ Sbjct: 63 IVHFCDGRNQFERIESLDGQHRQVYRHNDLVHSLWPHSRVAVVETRQAMGQFPLLLSAGA 122 Query: 120 KRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGET 179 R+ P+YD S+G R+A V+ + +DG R+ Y +W + S L +R ++ D Sbjct: 123 DRIVPFYDVKSLGDGRVAGHEANVLLLQPKDGYRFGYRLWAERSSGLLLRSEVFDERDVV 182 Query: 180 LEQFRVIAFNVN--QDISSSMQTLAKANLPPLL--SVPVGEKAKFSWTPTWLPQGFSEVS 235 LE ++ S +Q + + + + ++ + + W LP GF VS Sbjct: 183 LETSAFSEVSIGVKPRPESVLQAMKRLDGYRVERPTLQQVDIGREGWLLNALPPGFRHVS 242 Query: 236 SSRRPLPTMDNM----------------PIESRLYSDGLFSFSVNVNRATP--SSTDQML 277 S +R + + +YSDGL SV + P + ++ Sbjct: 243 SVKRLMTVAGGEQPRPAAAQEEFPLAPPSVLQVIYSDGLTYVSVFIEPYMPRLHRREMLM 302 Query: 278 RTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFG 315 G R IT++G++P T + A ++ Sbjct: 303 SLGATQTLVKRRGEWWITVIGDVPVVTLRAFAAALEPR 340 >UniRef50_Q07YZ2 Sigma E regulatory protein, MucB/RseB n=22 Tax=Shewanella RepID=Q07YZ2_SHEFN Length = 315 Score = 277 bits (709), Expect = 4e-73, Method: Composition-based stats. Identities = 89/317 (28%), Positives = 153/317 (48%), Gaps = 5/317 (1%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 + + L L F +A ++ A L+ M+ A Y+ S I + + L Y Sbjct: 2 LGVSLRIILLALLVLTFPTHAEDDLSAKAWLKNMSQAMHDKQYKTSIIQLQADHIRPLVY 61 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 H +DN+ +A L ++GP + V+ GN +++ E +++ I P+ + D Sbjct: 62 IHGIVDNKEVALLEYLNGPPKNAVRVGNTVTFIEHDQPAYSVVAPRIQGIWPAALAGDLS 121 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 +L Y F+ GR RIA R ++IR++A D RY VW+D ++ LP+R D L+++ + L Sbjct: 122 QLEKGYQFVIGGRGRIAGRPGQMIRLLANDDNRYDAQVWIDMDTYLPLRFDSLNKEKQLL 181 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRP 240 EQ VI + ++ + AK P +++ K +W TWLP+GF V Sbjct: 182 EQTMVIELIELTEPANILIEAAKQEWPAVMNQAERTDGK-NWQFTWLPEGFDVVVRDHHR 240 Query: 241 LPTMDNMPIESRLYSDGLFSFSVNVNRA--TPSSTDQMLRTGRRTVSTSVRDNAEITIVG 298 L + + P+E +DGL + SV V RA P + ++R G V V E+ +G Sbjct: 241 LIGI-HEPVEYVALTDGLANISVYVARAGENPMPNELLIRNGLSMVVVKV-GTLEVVAIG 298 Query: 299 ELPPQTAKRIAENIKFG 315 ++P +T +IA ++ Sbjct: 299 KVPSETLDKIANSLVLK 315 >UniRef50_P38108 Sigma factor algU regulatory protein mucB n=27 Tax=Pseudomonadaceae RepID=MUCB_PSEAE Length = 316 Score = 276 bits (705), Expect = 9e-73, Method: Composition-based stats. Identities = 76/307 (24%), Positives = 127/307 (41%), Gaps = 13/307 (4%) Query: 17 FSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARL-DNRPLAQLLQ 75 + A+ + L ++ A + +++ +F+ + H D +LLQ Sbjct: 14 MAVPATQAADASDWLNRLAEADRQNSFQGTFVYERNGSFSTHEIWHRVESDGAVRERLLQ 73 Query: 76 MDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTR 135 +DG R+EVV+ G L L + D +L+ +YD VG +R Sbjct: 74 LDGARQEVVRVDGRTQCISGG-----LADQLADAQLWPVRKFDPSQLASWYDLRLVGESR 128 Query: 136 IADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDIS 195 +A R V+ V RD RY + + +D ++ LP++ LL+ G+ LE+F+ N + Sbjct: 129 VAGRPAVVLAVTPRDQHRYGFELHLDRDTGLPLKSLLLNEKGQLLERFQFTQLNTGAAPA 188 Query: 196 SSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYS 255 A A + + +W WLP GF+ S R P + P+ Y Sbjct: 189 EDQLQ-AGAECQVVGPAKADGEKTVAWRSEWLPPGFTLTRSFMRRSPVTPD-PVACLTYG 246 Query: 256 DGLFSFSVNVNRATPSSTDQMLRT-GRRTVSTSVR----DNAEITIVGELPPQTAKRIAE 310 DGL FSV + + G V + +T+VGE+P TA+R+A Sbjct: 247 DGLARFSVFIEPLHGAMVGDARSQLGPTVVVSKRLQTDDGGQMVTVVGEVPLGTAERVAL 306 Query: 311 NIKFGAA 317 +I+ AA Sbjct: 307 SIRPEAA 313 >UniRef50_UPI0000E11523 putative anti sigma E (sigma 24) factor, negative regulator n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E11523 Length = 347 Score = 276 bits (705), Expect = 1e-72, Method: Composition-based stats. Identities = 82/316 (25%), Positives = 164/316 (51%), Gaps = 9/316 (2%) Query: 5 WFAMSLVTGSLLFSANAS------ATPASGALLQQMNLASQSLNYELSF-ISINKQGVES 57 +F + + SL +A A+ + LL +M A+ +LNY + + Sbjct: 21 FFTVLFLLYSLPINAQAANNMPQATNIEAPELLAKMAEATNTLNYASTLIVYRPGAEPVP 80 Query: 58 LRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYT 117 ++H D+ P+ L +++GP + ++ GN++SYF P + +L +I + Sbjct: 81 YLWKHGIKDDVPVEMLSELNGPNAKTLRYGNQVSYFNPDMSAHSLLQSHIHGPFAHNLIR 140 Query: 118 DFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDG 177 + ++ Y+ I VG++R+A +RV++RD +RY+YI+W+D S LP+++++++ G Sbjct: 141 YPEAIATAYEVIVVGKSRVAGNEAWQVRVLSRDNSRYNYILWVDAASFLPLKLNMVNAKG 200 Query: 178 ETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSS 237 + +EQ + + + ++ +A +LP ++ + + + +W T LP G +V Sbjct: 201 DLIEQVQATNLTITDTLDNAFVDMALKDLPAVMHINPPKSFRLNWGVTHLPLGMKQVKRD 260 Query: 238 RRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTG-RRTVSTSVRDNAEITI 296 L +++ +E L SDG+ SV + +AT + +L T T + V DN ++++ Sbjct: 261 IHRLSITEDV-VEYILLSDGMVDVSVYLQKATYQQAEDVLFTKDAVTFLSRVTDNIQVSV 319 Query: 297 VGELPPQTAKRIAENI 312 VG++PP TA+RI + I Sbjct: 320 VGKIPPATAQRIMQMI 335 >UniRef50_Q5R102 Negative regulator of sigma E activity n=1 Tax=Idiomarina loihiensis RepID=Q5R102_IDILO Length = 321 Score = 275 bits (704), Expect = 1e-72, Method: Composition-based stats. Identities = 80/316 (25%), Positives = 151/316 (47%), Gaps = 5/316 (1%) Query: 2 KQLWFAMSLVTGSLLFSANA--SATPASGALLQQMNLASQSLNYELSFISINKQGVESLR 59 + + L G+ SA + +M A LN+E S + ++ +E + Sbjct: 7 RSILCGAVLFAGTFSVSAQQTNEQAESGADWFNRMAEALTELNFEASLVHVHGDQIEPYQ 66 Query: 60 YRHARLDN-RPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTD 118 + L+QM+GP +++ N++++F + L D I P+ Sbjct: 67 WLQGNDPETGSTELLIQMNGPDFRILRVNNKVAHFNTSSSNYALESDTITAIFPAAFSQP 126 Query: 119 FKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGE 178 F+RLS Y + G R+ R + IR+++RD RYSY +W+D + +P+++ ++++ G+ Sbjct: 127 FERLSHSYQVMVGGGARVLGRNAQHIRILSRDNQRYSYALWIDRKHGMPLKMIMMNQSGD 186 Query: 179 TLEQFRVIAFNVNQDISSSMQTLAKANLPPLLS-VPVGEKAKFSWTPTWLPQGFSEVSSS 237 +EQ ++ + +V + ++ +PPLL + V +S P W P+GF +S Sbjct: 187 VVEQMQLTSLSVRDTAPEITKEISNIEMPPLLKDLRVQSATNYSVGPRWAPRGFKLLSQQ 246 Query: 238 RRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEITIV 297 L +D P++ L+SDGL +SV V T + + T+ + +N +T+V Sbjct: 247 SHTL-VVDATPVDHYLFSDGLAEYSVYVAELTEGMETDLALSSSHTLFSKRYNNFLVTVV 305 Query: 298 GELPPQTAKRIAENIK 313 G++P A+RIA +K Sbjct: 306 GQVPLTMAQRIAAEVK 321 >UniRef50_B3PJ99 Sigma factor algU regulatory protein MucB n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PJ99_CELJU Length = 332 Score = 273 bits (699), Expect = 5e-72, Method: Composition-based stats. Identities = 73/306 (23%), Positives = 131/306 (42%), Gaps = 25/306 (8%) Query: 21 ASATPASGALLQQMNLASQSLNYELSFISINKQG--VESLRYRHARLDNRPLAQLLQMDG 78 +S +LL +M S +NY+ +F +K ++ R H D +L ++G Sbjct: 41 SSNNEEVASLLAKMATRSHQVNYQGTFTYQHKDNPALQGFRIFHWVEDGIQYERLQHLNG 100 Query: 79 PRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIAD 138 P RE+ + G + GD ++ + +L+ Y F G R+A Sbjct: 101 PEREISRSGRALDC--------KSLGDQLLQGKILNMGARLAQLTELYRFEIRGIERVAG 152 Query: 139 RLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSM 198 R V+ + D RYSY + +D E+ L ++ L+D LE+++ + +N D++ Sbjct: 153 RNATVLLAIPLDNYRYSYFLSIDNETGLVLKSWLVDESARPLERYQFVELELNPDLTQIK 212 Query: 199 QTLAK-----ANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRL 253 Q A++ P K W W P GF V + I+ + Sbjct: 213 QLPKPRLHRDADIAVPECNPSDVKEPSGWHLNWAPPGFVFVGQKQVR------DHIDMLM 266 Query: 254 YSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSV----RDNAEITIVGELPPQTAKRIA 309 Y+DGL SFS+ + ++ +S + + + G + + +T+VGE+P TA++IA Sbjct: 267 YTDGLTSFSIFIEPSSQASPEGVAQRGATLAAMDQLEIGSERYRVTVVGEIPVVTAQKIA 326 Query: 310 ENIKFG 315 +NI Sbjct: 327 QNISRR 332 >UniRef50_A1U2X0 Sigma E regulatory protein, MucB/RseB n=3 Tax=Marinobacter RepID=A1U2X0_MARAV Length = 352 Score = 271 bits (693), Expect = 2e-71, Method: Composition-based stats. Identities = 71/307 (23%), Positives = 126/307 (41%), Gaps = 18/307 (5%) Query: 18 SANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMD 77 + + PA+ A L+++ A +Y F+ + V S+R H + R +L+ D Sbjct: 36 TTKSGEAPAAMAWLERLGPALNMTSYRGVFVYARGEQVHSMRIAHRYRNGRVEERLVMQD 95 Query: 78 GPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIA 137 G E+V++G + P L+ + +Y G R+A Sbjct: 96 GGSGEIVRKGMNVVCVLPDRGRVRLDEVIPSGPFAEAFTSQLMPFGRWYLPELAGEDRVA 155 Query: 138 DRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSS 197 ++ + ARD RYS+ +W++ E+ L ++ + D +GE LE F+ + DIS Sbjct: 156 GYDVVIVALGARDDDRYSHRLWLEKETGLLVKSQVRDVNGEVLEHFQFTDLEITDDISDE 215 Query: 198 MQTLAKANLPPLLSVPVGEKAKF------SWTPTWLPQGFSEVSSSRRPLPTMDNMPIES 251 + ++ G K + WT +W P+GF P + ++ Sbjct: 216 ELEVQTRGREISRTLDDGRKQESSVGRMNGWTLSWQPEGFV-------PAAAPRSGSGKA 268 Query: 252 RLYSDGLFSFSVNVNRATP-SSTDQMLRTGRRTVSTSVR----DNAEITIVGELPPQTAK 306 +SDGL +FSV V R G T+ I +VGE+PP TA+ Sbjct: 269 VAFSDGLAAFSVFVEPVGRLKMPTGASRIGATTIYMREVMVSDRPFLIAVVGEIPPGTAR 328 Query: 307 RIAENIK 313 ++A+ ++ Sbjct: 329 KVADAVE 335 >UniRef50_A6VUA2 Sigma E regulatory protein, MucB/RseB n=1 Tax=Marinomonas sp. MWYL1 RepID=A6VUA2_MARMS Length = 321 Score = 271 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 77/312 (24%), Positives = 135/312 (43%), Gaps = 11/312 (3%) Query: 3 QLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRH 62 ++F + +T S S ++ TP + LL+ M + +L+Y+ F+ + S+R RH Sbjct: 8 HIFFTLVCLTISG-ISVASNTTPDALHLLRSMTQSFSTLSYDGVFVHSEAMNMNSMRVRH 66 Query: 63 ARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRL 122 + L+ +DG + EV++ ++I P +V + RL Sbjct: 67 DLMGGVEYESLVDLDGDKIEVLRIDDKIISVYPNA-LVANMRAPLVPPFKRFKDVESDRL 125 Query: 123 SPYYDFISVG-RTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLE 181 YD I +RIA R +++V +D RY + W+D E+ ++ D++ DG+ LE Sbjct: 126 IKGYDMIVDDHTSRIAGRKVISVKLVPKDQYRYGHQFWLDEENHFLLKHDMMKTDGKLLE 185 Query: 182 QFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPL 241 + + + N D+ + + + + K W WLP+GFS V R L Sbjct: 186 RIQFASVNFAPDLKDKDFVPKEGSYAEPVVETQPRRVKNLWQFDWLPEGFSLVWPEARSL 245 Query: 242 PTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTS---VRDN-AEITIV 297 N L SDG+ + S+ V S T +L G V+D +T+V Sbjct: 246 ----NHGTSMLLLSDGMATVSIFVEPTMKSKTMSILNMGATIAGERSIKVKDQLYLLTMV 301 Query: 298 GELPPQTAKRIA 309 GE+P T +++ Sbjct: 302 GEVPEPTIEKLM 313 >UniRef50_A1WMW7 Sigma E regulatory protein, MucB/RseB n=5 Tax=Comamonadaceae RepID=A1WMW7_VEREI Length = 357 Score = 271 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 68/298 (22%), Positives = 120/298 (40%), Gaps = 10/298 (3%) Query: 26 ASGALLQQMNLASQSLNYELSFIS-INKQGVESLRYRHARLDNRPLAQLLQMDGPRREVV 84 L++M A +Y +F+ + S R HA R + ++ + G R V Sbjct: 57 DMAQWLERMRSAPCHRSYAGTFVVLSANGAMSSARIWHACDGQRQMERVESLSGTPRTVF 116 Query: 85 QRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVI 144 +R +E+ F P + V P + + +Y +G+ R+A + +V+ Sbjct: 117 RRDDEVRTFLPQQRIVRADRRDAVGLFPPVPPVSGTSVGQFYVSRLMGQERVAGFVADVV 176 Query: 145 RVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQ--DISSSMQTLA 202 D R+ Y +W + ++ L +++ L DG LEQ ++N + + + Sbjct: 177 WFKPVDTLRFGYRLWSERDTGLAVKLQTLAPDGRVLEQAAFSELDLNAPVQVDQLARLMD 236 Query: 203 KANLPPLLSVPVGEKAK--FSWTPTWLPQGFSEVSSSRRPLPTMDNMP-IESRLYSDGLF 259 L++ PV + WT GF VS RR + D+ P + LYSDGL Sbjct: 237 ATAGYKLIAPPVVKTTAKEEGWTLRQPVAGFVPVSCHRRAVSMADDAPSVLQCLYSDGLA 296 Query: 260 SFSVNVNRATPSS---TDQMLRTGRRTVST-SVRDNAEITIVGELPPQTAKRIAENIK 313 S S+ + P Q+ G + V + +T VGE+P T + A ++ Sbjct: 297 SVSLFLEPFDPQHHPARPQISGMGATQLLAQRVAPDMWVTAVGEVPLSTLRLFAGQLE 354 >UniRef50_A6FDN5 Sigma-E factor regulatory protein RseB n=1 Tax=Moritella sp. PE36 RepID=A6FDN5_9GAMM Length = 347 Score = 271 bits (692), Expect = 3e-71, Method: Composition-based stats. Identities = 91/302 (30%), Positives = 162/302 (53%), Gaps = 9/302 (2%) Query: 19 ANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDG 78 A A ++ ALL M A + LNY+LS++ I + + +RY H +D+ + LL ++G Sbjct: 41 AAAPPQLSADALLDNMKTAFKQLNYDLSYVEIERGRITPMRYSHGVIDDVSVGHLLSLNG 100 Query: 79 PRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFI-SVGRTRIA 137 RE ++RG+ S+FE ++L+ I L +L+ T+ Y I G++R+ Sbjct: 101 NPREYLRRGDITSFFEAEQPGYSLSSTAIPGLLFNLMATELTLDDSLYQAIYVGGKSRVT 160 Query: 138 DRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSS 197 RL +V+RVV D R+ Y++W+D + LP+R+D++ GE + Q I+ D++ Sbjct: 161 GRLSQVVRVVPNDKYRFGYLIWIDVTTNLPLRIDMIKDSGEVVFQVMAISLYQFPDVTPW 220 Query: 198 MQTLAKANLPPLLSVPV-----GEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESR 252 ++ L LPP+LS E K W W+P GF ++ S++ + + I+ Sbjct: 221 LEQLNSVKLPPVLSAVQTQALLPEPTKSEWKAAWMPDGFKQIVSNKHQIVGIGQ-IIDYM 279 Query: 253 LYSDGLFSFSVNVNRATPSS--TDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAE 310 +SDGL S+ VN + + + +G+ ++ + + D+ EI +VGE+P TAK+IA+ Sbjct: 280 QFSDGLVDISIYVNTNAKAGSLSQGLGVSGQISLQSKITDDIEIVVVGEVPSMTAKKIAD 339 Query: 311 NI 312 ++ Sbjct: 340 SV 341 >UniRef50_A3WPR5 Negative regulator of sigma E activity n=1 Tax=Idiomarina baltica OS145 RepID=A3WPR5_9GAMM Length = 321 Score = 270 bits (691), Expect = 4e-71, Method: Composition-based stats. Identities = 83/293 (28%), Positives = 155/293 (52%), Gaps = 3/293 (1%) Query: 23 ATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARL-DNRPLAQLLQMDGPRR 81 A M+ A N+E S + + + +E + HA + L ++QM+GP Sbjct: 30 AQSDGERWYDFMSTALNEQNFEASLVYVLGERIEPYHWLHAVEPNGEQLELIVQMNGPGF 89 Query: 82 EVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLC 141 ++ G+++S+F P ++L + I +P F+++ YY ++VG R+ DR Sbjct: 90 RALRIGDKVSHFHPAARDYSLRANSINHLIPPAFSEKFEKIQSYYRVVAVGGARVLDRKA 149 Query: 142 EVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTL 201 + IR++++ R+ + VW+D +S +P++V +++ DG +EQ ++ + + QD S ++ L Sbjct: 150 QHIRLISKHDNRFGFSVWVDRDSGMPLKVMMINEDGIPVEQVQMTSLALRQDPSPLLEEL 209 Query: 202 AKANLPPLLSVPVGEKA-KFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFS 260 + ++PPL+ V + + S P W P+GF V L +DN P++ L++DGL Sbjct: 210 KRLSMPPLIQVTTNSQQMQRSLRPLWHPEGFKLVEQKHHQLA-VDNTPVDHYLFTDGLTE 268 Query: 261 FSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIK 313 +SV + T M G + + T R++ IT+VG++P QTAKRI ++ Sbjct: 269 YSVYIAPRDAEQTGAMSVVGSQNLYTEPRNDVIITVVGQIPIQTAKRIVAEVQ 321 >UniRef50_UPI0000E87AE1 Putative Sigma E regulatory protein, MucB/RseB n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87AE1 Length = 317 Score = 270 bits (691), Expect = 4e-71, Method: Composition-based stats. Identities = 63/320 (19%), Positives = 127/320 (39%), Gaps = 10/320 (3%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 +++L+F + S +L + + AS+ LNY+ +F N + ++S+ Sbjct: 2 VRKLFFLALICVSGTSASL---TIEDPWKILTEAHQASKMLNYQGTFHLKNSKVIQSMEI 58 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 HA ++ MDG E++ G I ++ + PS++ + + Sbjct: 59 THAIHGEDEYTRMTLMDGDPGEMLSHGKNIFVYDSKENNVVIQKREQHHLFPSVLPSTPE 118 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 L Y R+ADR +++ ++ +D R+ + W+D ++ LP+++ + + E + Sbjct: 119 NLKKVYTLSFGEVVRVADRPAQMLTLIPKDNFRHQFHFWIDQDTALPLKMIVSNEANEII 178 Query: 181 EQFRVIAFNVNQ---DISSSMQTLAKANLPPLLSVPVGEKAKFS-WTPTWLPQGFSEVSS 236 EQ + D+S + + + WT P+GFSE+SS Sbjct: 179 EQASFTKLKIVDMKTDLSWFKPKIDLSKEYVMHEEEPVVLPGLKFWTFVNKPKGFSEISS 238 Query: 237 SRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPS--STDQMLRTGRRTVSTSVRDNAEI 294 S + N+ +YSDGL SV + + +S ++ Sbjct: 239 SATRNKDL-NVLSHHLIYSDGLSYISVFIQPVQTGLMPKVGTISMEGTNISARYYRGYQV 297 Query: 295 TIVGELPPQTAKRIAENIKF 314 VG +P + + ++I F Sbjct: 298 MAVGTVPMKALESFTKSISF 317 >UniRef50_Q7NWD0 Negative regulator for alginate biosynthesis MucB n=1 Tax=Chromobacterium violaceum RepID=Q7NWD0_CHRVO Length = 321 Score = 270 bits (691), Expect = 5e-71, Method: Composition-based stats. Identities = 71/313 (22%), Positives = 130/313 (41%), Gaps = 7/313 (2%) Query: 11 VTGSLLFSANASA-TPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRP 69 + G L+F A +A LL+ + A + + +++ +E+ R + Sbjct: 6 LIGVLMFGAACAAHAEDDMQLLRNVGNAGRQQPLDGTYLHQMNGTLETFRIVRQGQGDNV 65 Query: 70 LAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFI 129 + +DGP REVV++G E++ F P + P+L+ D ++ Y Sbjct: 66 REKRTSLDGPTREVVRKGRELTCFAPDKRALMACKISAMRLFPALLPDDLDDITRSYALK 125 Query: 130 SVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFN 189 G R+A R C+ + + RD RY+ + ++ + LP++V L G+ +EQF Sbjct: 126 RTGHDRVAKRDCQWLDLQPRDAQRYTMRMCIEPATYLPLKVMTLSPRGDAVEQFTFTDVE 185 Query: 190 VNQDISSSM---QTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDN 246 + + + L S E A T LPQGF + S +R LP Sbjct: 186 LGGAKDKRAYASRLSQRFQLRSGASAGSEEAAASQSEVTGLPQGFRLLRSVQRVLPGQGG 245 Query: 247 MPIESRLYSDGLFSFSVNVN--RATPSSTDQMLR-TGRRTVSTSVRDNAEITIVGELPPQ 303 P+ + SDGL SV V + +++ G ++TS + + ++T VG++P Sbjct: 246 KPVRHMVLSDGLVMLSVFVEPPPPEHARLEKVGNLHGAINMATSYQGDMQLTAVGDMPQT 305 Query: 304 TAKRIAENIKFGA 316 + + + Sbjct: 306 AMMALLKGLHVNG 318 >UniRef50_C4LBZ4 Sigma E regulatory protein, MucB/RseB n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LBZ4_TOLAT Length = 320 Score = 268 bits (685), Expect = 2e-70, Method: Composition-based stats. Identities = 90/324 (27%), Positives = 168/324 (51%), Gaps = 12/324 (3%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 M ++ L+ F ASA P++ ALL QM N+EL I + +E LR Sbjct: 1 MHRIVLTFFLI---GSFITKASAEPSAEALLFQMQRGYHHNNFELVMAHILQNNIEPLRL 57 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 H + + LL + G E + + ++++ E +TL + S++ + + Sbjct: 58 THGWNNRTEITHLLTLSGRPIEYLGKNKQVTFAESAQISYTLQESQLPGLWFSMLNSSPE 117 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 L YY+ +S G++RIA ++ +++R+ A++ ++YS+I+W++ ++ + +R+D+ D G + Sbjct: 118 TLLKYYEVVSTGKSRIAGQVAQLVRLTAKEDSKYSFIIWLEQKTGILLRLDVNDAQGNLV 177 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPV---GEKAKFSWTPTWLPQGFSEVSSS 237 EQ+ I F + + S++++TLA +PP + E A WT WLP GF +SS Sbjct: 178 EQYLGIDFRLLSENSTNIKTLASMKVPPAATSHDIYRAEPASHQWTLGWLPSGFVPLSSD 237 Query: 238 RRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSS----TDQMLRTGRRTVST-SVRDNA 292 + L D ++ + SDGL SV ++R++ + +Q+ G ++ + + D Sbjct: 238 QHKLIGSD-ELVDYFMLSDGLVDVSVYISRSSAETKGREKEQIAMHGATSIFSINRDDGV 296 Query: 293 EITIVGELPPQTAKRIAENIKFGA 316 +T+VGELP + +RIAE I+ Sbjct: 297 TLTVVGELPLLSLRRIAETIRANK 320 >UniRef50_B7RX56 MucB/RseB family protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RX56_9GAMM Length = 319 Score = 266 bits (680), Expect = 7e-70, Method: Composition-based stats. Identities = 68/325 (20%), Positives = 126/325 (38%), Gaps = 28/325 (8%) Query: 1 MKQLWFAMSLVTGSLLFSANA-SATPASGALLQQMNLASQSLNYELSFISINKQ-GVESL 58 + L+ SL SA A + L +M+ + +NY + ++ + Sbjct: 10 LSLGALGGFLMLASLTASAVCPGADSEAIKWLDKMSRSVHQVNYHGVVTFQRGEEDMQVM 69 Query: 59 RYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTD 118 + H+ D + Q+ G +VV+ + + PG + + D Sbjct: 70 QVSHSVTDGTTTESMTQLTGQGAKVVRAEHPLECIHPGHKLLRIGDDINAGE-------- 121 Query: 119 FKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGE 178 ++ +Y F R+A R I V D RY Y++ +D + L ++ + R + Sbjct: 122 -CGVAEHYRFSVTDGERVAGRKAVRIIVAPGDMYRYGYVMELDRRTGLLLKTATMGRGDK 180 Query: 179 TLEQFRVIAFNVNQDISS--SMQTLAKANLP-PLLSVPVGEKAKFSWTPTWLPQGFSEVS 235 LE+F+ + + +A P P + P A + W WLP GF Sbjct: 181 VLEKFQFADLSYKGKDPEGADANLVHEAQHPVPGHNAPQVSAAGYGWDVKWLPSGFMATD 240 Query: 236 SSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPS--STDQMLRTGRRTVSTSVR---- 289 S +R Y+DGL FSV + + ++R+G T + Sbjct: 241 SQQRNAGRK--------TYTDGLAVFSVFIEALDREIRPGEGVVRSGSTTSYSRGMALSG 292 Query: 290 DNAEITIVGELPPQTAKRIAENIKF 314 + +T+VGE+P TA+ +A+++K+ Sbjct: 293 EPVLVTVVGEVPVNTARMVADSVKW 317 >UniRef50_B8KFV0 Putative negative regulator for alginate biosynthesis n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KFV0_9GAMM Length = 322 Score = 263 bits (672), Expect = 7e-69, Method: Composition-based stats. Identities = 73/319 (22%), Positives = 129/319 (40%), Gaps = 29/319 (9%) Query: 6 FAMSLVTGSLLFSANASA-TPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHAR 64 F + L +L+ + PA LLQ M+ +Q +Y ++ + H+ Sbjct: 24 FLVLLAPATLVAQPQCESLDPAVAQLLQAMSNNAQQASYSGVVTLQRGSDMQIMELSHSV 83 Query: 65 LDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSP 124 + + +L+++ G V + G+ PG + +++ F L+ Sbjct: 84 SNGQASEELVRLTGQDARVERSGHPTGCMHPGHQLLRA---------ANVLNGSFCGLAS 134 Query: 125 YYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFR 184 Y F RIADR +RV RD R+ +++ +D ++ L ++ D LEQF+ Sbjct: 135 VYKFRVQPGDRIADRESVRLRVEPRDMYRFGHVLELDQDTALILKSSTFAADQRVLEQFQ 194 Query: 185 VIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTM 244 + ++ + +A+ P + SW WLP GF Sbjct: 195 FASLSMRPGEPNDAVIAHEASHPHPHE-SAHLRTGVSWELAWLPDGFM----------AT 243 Query: 245 DNMPIESR--LYSDGLFSFSVNVNR--ATPSSTDQMLRTGRRTVSTS----VRDNAEITI 296 D P ES+ Y+DGL SFSV + A + + R G T R IT+ Sbjct: 244 DAAPPESQRKSYTDGLASFSVFLEPLSAAIKPGEGVERQGSTVAYTRGVLLQRRPVLITV 303 Query: 297 VGELPPQTAKRIAENIKFG 315 +GE+P TA+ +A++++ Sbjct: 304 LGEIPTNTARMLADSVRLR 322 >UniRef50_Q1N1C1 Sigma factor algU negative regulatory protein MucB n=1 Tax=Bermanella marisrubri RepID=Q1N1C1_9GAMM Length = 339 Score = 262 bits (669), Expect = 1e-68, Method: Composition-based stats. Identities = 74/301 (24%), Positives = 126/301 (41%), Gaps = 15/301 (4%) Query: 23 ATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRRE 82 + + Q M + +Y+ F+ +++ H + +LL +DGP RE Sbjct: 44 QSLTAEGWYQTMRERAPEAHYQGIFVHQAGNESQTVEIVHGTHQDAIWERLLHLDGPVRE 103 Query: 83 VVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCE 142 V+++G+ + P + S +L Y F +G+ RI RL Sbjct: 104 VIRQGDAVYCIYPDRSVEQIQQKD-STPFGSNSLGQLNQLQTAYGFRMLGQERIVGRLAM 162 Query: 143 VIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLA 202 I++V RD R+ Y +W+D ++ +P+R +L+ GE LE+++ F+ + +S Sbjct: 163 GIQLVPRDKARHVYQMWIDQQTFVPLRTELMTLKGEILERYQFAYFSPVETLSVDAFAPK 222 Query: 203 KA-----NLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDG 257 P + + W WLP GF++ + R+YSDG Sbjct: 223 TPGVELAEAPQDEVLKSTPEDVIEWRLNWLPVGFAD-----QGAKGYAPKLSARRIYSDG 277 Query: 258 LFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRD----NAEITIVGELPPQTAKRIAENIK 313 + FSV V R G +S +D IT+VGE+P TAKRIAE+++ Sbjct: 278 IVMFSVFVEAVDEIKDQGFARVGPTVLSVMHKDWQDQTHRITVVGEIPAATAKRIAESVE 337 Query: 314 F 314 Sbjct: 338 L 338 >UniRef50_Q6SFI4 MucB/RseB family protein n=1 Tax=uncultured marine bacterium 580 RepID=Q6SFI4_9BACT Length = 314 Score = 261 bits (667), Expect = 2e-68, Method: Composition-based stats. Identities = 75/305 (24%), Positives = 134/305 (43%), Gaps = 10/305 (3%) Query: 16 LFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQ 75 +F + A ++L++ ASQ LNYE F S + S HA +DN+ L Sbjct: 14 VFPLLSFAMEDPWSILEKSAKASQQLNYEGVFHSQSSSESNSTHVIHANIDNKEYCLLKM 73 Query: 76 MDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTR 135 +DG EV G+ + + + + PS++ +D K L Y + R Sbjct: 74 LDGAPNEVFCSGDMV--YVTSQDGLLIKKRKNQFLFPSVLPSDIKHLKKNYQLSFGEKKR 131 Query: 136 IADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDIS 195 +ADR+ + I + A+D R++Y +W+D ++ LP+++ + + + +EQ ++ I Sbjct: 132 VADRMAQHIELKAKDNLRFNYHIWIDEKNLLPLKLIVTNNKNQPIEQSTFTTIAFSEVID 191 Query: 196 SSMQT----LAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIES 251 + L+K + + KF W LP GF EV R + + N+ Sbjct: 192 KDIFEKNINLSKIYVSKNKFIENYVSNKF-WNLKDLPSGFKEVDLISRRVNGL-NLLDYQ 249 Query: 252 RLYSDGLFSFSVNVNRATPS--STDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIA 309 ++SDGL S+ + T + + G +S +D +I VG +PP+T + Sbjct: 250 IIFSDGLAYVSLFIRPITRGTEPKEGTVAIGPTNISARYQDGYQIMSVGMVPPETVNTFS 309 Query: 310 ENIKF 314 I+F Sbjct: 310 GAIEF 314 >UniRef50_A1TLE5 Putative sigma E regulatory protein, MucB/RseB n=2 Tax=Acidovorax RepID=A1TLE5_ACIAC Length = 352 Score = 259 bits (663), Expect = 7e-68, Method: Composition-based stats. Identities = 61/299 (20%), Positives = 119/299 (39%), Gaps = 12/299 (4%) Query: 28 GALLQQMNLASQSLNYELSFIS-INKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQR 86 +++++ AS+ +Y SF+ + G+ S R HA + ++ +DG R V ++ Sbjct: 52 EDWVERIHRASREQSYRGSFVVWSSAGGMTSSRIWHATDGKVQIERIEALDGSPRTVFRK 111 Query: 87 GNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRV 146 + + F P + P L + + +Y +G R+A + ++ + Sbjct: 112 DDLVRTFLPKARVVKEERRDMPGLFPHLPQAESSAVLRHYRARFLGSDRVAGQDASILWL 171 Query: 147 VARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVN--QDISSSMQTLAKA 204 RDG R+ Y +WM S L +++ L G+ LEQ + + + + Sbjct: 172 EPRDGLRFGYRIWMARPSGLVVKLQTLGLRGQVLEQAAFSQIDFDTPPTVPQLAAQMDDT 231 Query: 205 NLPPLLSVPVGEKAK--FSWTPTWLPQGFSEVSSSRRPLPTMDNMPIE--SRLYSDGLFS 260 LL+VP+ + W + GF +R + MP+ ++SDGL + Sbjct: 232 RGFRLLAVPLVKTTAREAGWQLSRPVAGFVPGDCYKRDPAVLARMPMPPLQCIFSDGLAT 291 Query: 261 FSVNVNRATPSSTDQMLR---TGRRTVSTSVR--DNAEITIVGELPPQTAKRIAENIKF 314 S+ + R G + +T VGE+P +T +++ E I+ Sbjct: 292 VSLFFEPYDAARHAGEPRRMDMGATQTLAQRVAGGSIWLTAVGEVPQETLRQLVEQIEP 350 >UniRef50_A4BBJ2 Sigma factor algU negative regulatory protein MucB n=1 Tax=Reinekea blandensis MED297 RepID=A4BBJ2_9GAMM Length = 317 Score = 258 bits (660), Expect = 2e-67, Method: Composition-based stats. Identities = 71/305 (23%), Positives = 124/305 (40%), Gaps = 12/305 (3%) Query: 21 ASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPR 80 ++ +L+ M A Q +Y ++ H D L Q+DG Sbjct: 15 SAGQAMEWQMLEDMRQAVQQQSYRGEYLHRRGDHSSVYSVVHRFEDGVSQELLRQLDGDM 74 Query: 81 REVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRL 140 EV+++G+E + P LN + + + ++ +Y SVG R+A Sbjct: 75 IEVLRQGDERICYLPPDARGALNNALPAAPFSQVEVLNLQTIADHYQASSVGSERVAGYQ 134 Query: 141 CEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQT 200 +I + D RY +W++ ++ L ++ +L+ +G LEQFR + ++ Sbjct: 135 ASIIELK-GDDWRYRQRLWLEKQTGLLLQSELIGPEGVVLEQFRFTRLELGVEVLDRELV 193 Query: 201 LAKANLPPLLSVPVG-------EKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRL 253 ++ V FS WLP GF S R ++ +E R Sbjct: 194 PTLRGESDVIRQRVQRVIPDSLPDDGFSSQVDWLPAGFERTFSQR---TVGNSGWLEQRT 250 Query: 254 YSDGLFSFSVNVNRAT-PSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENI 312 YSDGL + S+ V + ++ + + G T + R IT+VGE+P QT K IA+ I Sbjct: 251 YSDGLATVSIFVEQGESDDASSGLAKMGATTAWMTFRQGVSITVVGEVPNQTVKAIAKEI 310 Query: 313 KFGAA 317 ++ Sbjct: 311 SLASS 315 >UniRef50_B9Z3B1 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Lutiella nitroferrum 2002 RepID=B9Z3B1_9NEIS Length = 319 Score = 258 bits (659), Expect = 2e-67, Method: Composition-based stats. Identities = 64/317 (20%), Positives = 133/317 (41%), Gaps = 9/317 (2%) Query: 3 QLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRH 62 +L ++V +L A+A+ L++ AS++ +++ VE+ Sbjct: 2 RLKHLTAIVCIALPALAHAADD---WQTLKKSAQASRNQVLTGTYLHQMSGVVETFHIVR 58 Query: 63 ARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRL 122 + +DG RE+V+ G+E++ + P + + P+L+ D + Sbjct: 59 GAGTEGVIELRQSLDGTPREIVRNGSELTGYGPDKKALMAAKVSAMRLFPALLPDDMAGV 118 Query: 123 SPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQ 182 + Y + R+A R C+ + + A+D RY + +D S LP+++ L E +EQ Sbjct: 119 AESYTLKRLAGDRVAQRECDWLELKAKDRARYGLRLCLDRASLLPLKIMTLSPAQEPVEQ 178 Query: 183 FRVIAFNVNQDISSSMQTLA-KANLP---PLLSVPVGEKAKFSWTPTWLPQGFSEVSSSR 238 + ++ + +LP SVP + LP GF + + + Sbjct: 179 YMFTELDLAAPKDRNQFKPHYPLSLPIRNASTSVPPSGAGMEGVEVSGLPSGFRLIRALQ 238 Query: 239 RPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRT--GRRTVSTSVRDNAEITI 296 R LP + +Y+DGL S+ + A + + T G +++ + ++T+ Sbjct: 239 RSLPGQAEHAVRHLVYTDGLVMLSLFIEPAGAEPRVERVSTLYGVVAMASGSQGGMQLTL 298 Query: 297 VGELPPQTAKRIAENIK 313 VG+LP + + ++I+ Sbjct: 299 VGDLPEASMMSLLKSIR 315 >UniRef50_C7HX17 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Thiomonas intermedia K12 RepID=C7HX17_THIIN Length = 359 Score = 257 bits (656), Expect = 4e-67, Method: Composition-based stats. Identities = 69/292 (23%), Positives = 113/292 (38%), Gaps = 7/292 (2%) Query: 28 GALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRG 87 LQ ++ A++SLNY FI+ + + H L ++ +DG RR +V Sbjct: 64 EQWLQTVSAAARSLNYSGVFITQRGDEISTSSLVHYVLPQGHFERIETLDGQRRIMVSLN 123 Query: 88 NEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVV 147 +E+ P ++ S P L+ T + Y G R A C V ++ Sbjct: 124 DEVRTSWPDYRLTLIDNQAGQASFPRLLKTTDGEVDRNYRLERGGLQRCAGFECRVSTLL 183 Query: 148 ARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLP 207 RD R+ Y +W +S+L ++ LD G + Q +N S+ + P Sbjct: 184 PRDDLRWGYRLWSLRDSQLLVKAQTLDAAGHVINQVAFTELKINVAPRQSLVRDSLHQPP 243 Query: 208 ----PLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLP-TMDNMPIESRLYSDGLFSFS 262 + V W + GF V RR + + L SDGL S S Sbjct: 244 GYAVEQMKVVPVSLQSQGWALSSQVPGFKTVGVFRRSMSVGSKPSEVLQWLLSDGLASVS 303 Query: 263 VNVNRATPSSTDQML--RTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENI 312 + V A S R G + ++ +T++G +P +T +RI+E I Sbjct: 304 IFVQSAADLSEPVAPEQRVGGTLALSRRIGDSWLTVMGAVPERTLRRISEAI 355 >UniRef50_A4A3V1 MucB/RseB family protein n=1 Tax=Congregibacter litoralis KT71 RepID=A4A3V1_9GAMM Length = 298 Score = 256 bits (653), Expect = 1e-66, Method: Composition-based stats. Identities = 67/315 (21%), Positives = 121/315 (38%), Gaps = 25/315 (7%) Query: 8 MSLVTGSLLFSANASA-TPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLD 66 +SL L A P+ LLQ M+ +Q NY ++ + H + Sbjct: 2 LSLAAAFTLAQPQCDALAPSVARLLQAMSSNAQRGNYSGVVTLQRGNDMQIMELSHRVEN 61 Query: 67 NRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYY 126 + +L ++ G V + + PG + +I F L+ Y Sbjct: 62 GQASEELSRLTGQDALVERTDHPTDCMHPGHQLLRS---------AEIIDGSFCGLASVY 112 Query: 127 DFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVI 186 F RIA R +RV +D R+ +++ +D ++ L ++ D LEQF+ Sbjct: 113 RFRVQPGDRIAGRASLRLRVEPKDMYRFGHVLELDQDTALILKSSTFAADQSVLEQFQFA 172 Query: 187 AFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDN 246 + ++ + +A P + +W WLP+GF S + Sbjct: 173 SISMAPRQPADAVVEYEATHPHPHE-SEHLRRGVAWDLAWLPEGFMPTDSVPKES----- 226 Query: 247 MPIESRLYSDGLFSFSVNVNR--ATPSSTDQMLRTGRRTVSTS----VRDNAEITIVGEL 300 + + Y+DGL SFSV + A + + R G T R +T++GE+ Sbjct: 227 ---QRKSYTDGLASFSVFLEPLGAAIKPGEGVERQGSTVAYTRGTLLDRRPVLVTVLGEI 283 Query: 301 PPQTAKRIAENIKFG 315 P TA+ +A++++ Sbjct: 284 PTNTARMLADSVRLQ 298 >UniRef50_B1XZN2 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Leptothrix cholodnii SP-6 RepID=B1XZN2_LEPCP Length = 387 Score = 255 bits (652), Expect = 1e-66, Method: Composition-based stats. Identities = 56/328 (17%), Positives = 115/328 (35%), Gaps = 34/328 (10%) Query: 24 TPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREV 83 P +++++ A+ ++ +F+ + SLR H + + ++ +DG R+V Sbjct: 60 HPDPATVIRRIQDAANRHSFSGTFVVSAGGAMTSLRITHVSDGHNQIERVETLDGQMRQV 119 Query: 84 VQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEV 143 + + + P + + P+++ T Y+ S G R+A EV Sbjct: 120 YRHNDLVHVLWPRSHAAIIEHRDLGLGYPAVLQTGSAARLDMYELKSAGIDRVAGLEAEV 179 Query: 144 IRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAK 203 +++ RD RY +W++ ++ L +R D+L GE +E + S Q ++ Sbjct: 180 LQLRPRDAHRYGQRLWLERQTGLLLRTDILGPQGELIESAGFSELKWSARSQSQTQAQSQ 239 Query: 204 ANLPPLL----------SVPVGEKAKFSWTPTWLPQGFSEVSSSRRP------------- 240 L + + E + W GF + + P Sbjct: 240 TLLAEMHRLKGYRIERPKLTHTELEREGWMLRTPVAGFRVLHTYAHPPGLPSHGAHAPDA 299 Query: 241 --------LPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQ---MLRTGRRTVSTSVR 289 + ++SDGL + S+ + R + G Sbjct: 300 VRTASGDAAAPNPQGGVLQAVFSDGLTTVSLFIERYDAGRHQREAPAASQGATQAIGQRH 359 Query: 290 DNAEITIVGELPPQTAKRIAENIKFGAA 317 + IT VG++P T ++ A I+ Sbjct: 360 GDWWITAVGDVPRATLRQFAAQIERRKP 387 >UniRef50_Q1YS35 MucB/RseB n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YS35_9GAMM Length = 347 Score = 254 bits (650), Expect = 3e-66, Method: Composition-based stats. Identities = 76/308 (24%), Positives = 133/308 (43%), Gaps = 25/308 (8%) Query: 18 SANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMD 77 A+ ++ L+ +M AS+ LNY+ F + + S++ HA D + ++ MD Sbjct: 24 PLFAAQMESAHDLISKMAKASRELNYQGLFTYEYRGNLTSVKLTHAVQDGQIYERMQHMD 83 Query: 78 GPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIA 137 G +R ++R + + G S L + RL +Y+F G+ RIA Sbjct: 84 GVQRNALRRTDNVDCLRTGDMLLR-------GSAYRLNDQSYARLEDFYEFHIKGQGRIA 136 Query: 138 DRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSS 197 +R +I V+ +D RY Y+V +D ES L ++ L+ G+ LE+F+ + + ++ Sbjct: 137 NRQVVMIHVLPKDKHRYGYVVAIDKESGLLLQSVLMSHTGKPLERFQFVDIQIGGSMAEL 196 Query: 198 MQTLAKANLPPLL--------SVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPI 249 ++ + S + W+ W+P GF S +DN Sbjct: 197 GFDSEASDFSDVALDQGNCIDSNSQITTSASRWSTQWMPPGFVMASHK-----LVDNQGQ 251 Query: 250 ESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVR-----DNAEITIVGELPPQT 304 ES +++DGL FSV ++ S + TV+ + I +VGE+P T Sbjct: 252 ESMMFTDGLAVFSVFIDIDKARSLPAIEANLGATVAVLTKAEINNQEYAICVVGEIPRAT 311 Query: 305 AKRIAENI 312 A +IA I Sbjct: 312 ASQIASAI 319 >UniRef50_A6GP47 Sigma E regulatory protein, MucB/RseB n=1 Tax=Limnobacter sp. MED105 RepID=A6GP47_9BURK Length = 326 Score = 252 bits (645), Expect = 9e-66, Method: Composition-based stats. Identities = 67/324 (20%), Positives = 129/324 (39%), Gaps = 12/324 (3%) Query: 2 KQLWFAMSLVTGSLLFSAN--ASATPASGALLQQMNLASQSLNYELSFISINKQGVESLR 59 + FA + TG LL S A A + +L+ + ++SL+Y I+ + + ++ + Sbjct: 5 RPFHFAKHVATGVLLASVAFAAHADQSLWSLVWASHDQAKSLSYSGLLITESGKHSQTSK 64 Query: 60 YRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLI--YT 117 H L ++DG + ++ ++I P + + + P ++ Sbjct: 65 LLHQATAGGEFEVLERLDGQPAKWIRHNDQIQCVIPDRKMILTERRHTSIAFPRVLAGAD 124 Query: 118 DFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDG 177 L Y + R+A R V+++ +D RY Y +++D E+KL MR +L G Sbjct: 125 GSNSLEKLYTISEMPGRRVAGRAVRVLKLTPKDDLRYEYRLYVDRENKLLMRSELYSPQG 184 Query: 178 ETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQ---GFSEV 234 E LE + + + S V T LP GF + Sbjct: 185 EVLENVGFKEISFEPALIENPSLAKAGPGWRTSSTEVRTLTPSELTYD-LPDIAFGFKKA 243 Query: 235 SSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNR--ATPSSTDQMLRTGRRTVSTSVRDNA 292 + R + I +YSDGL + SV V + A+ S + G + + Sbjct: 244 DTVCR--VKSKDDQIHQTVYSDGLSTLSVFVQKIQASHSMPQVPMSHGAVMSKSETQGQH 301 Query: 293 EITIVGELPPQTAKRIAENIKFGA 316 +T++GE+P +T +++++ + Sbjct: 302 LVTVLGEVPEKTLGLFLKSVRWKS 325 >UniRef50_B6BUK0 Sigma E regulatory protein, MucB/RseB, putative n=1 Tax=beta proteobacterium KB13 RepID=B6BUK0_9PROT Length = 314 Score = 247 bits (630), Expect = 5e-64, Method: Composition-based stats. Identities = 65/318 (20%), Positives = 129/318 (40%), Gaps = 18/318 (5%) Query: 9 SLVTGSLLFSANASATPASGALLQ--QMNLASQSLNYELSF-ISINKQGVESLRYRHARL 65 L+ LL S AS+ L+ + + AS LNY + + Q ++S + H Sbjct: 4 LLLFICLLISGAASSNE---LWLKISEASKASHDLNYSGIINTTDSNQDIQSTKMIHVNH 60 Query: 66 DNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPY 125 + ++ ++DG ++ + ++ + P++ ++ +L Sbjct: 61 EGEEFLKIEKIDGADNLLLMHEADAVIYDNDQNKILIKKKKDAHLFPNIFPSNLDKLKDS 120 Query: 126 YDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRV 185 Y G R+A R +++ + D RY+Y +W+D +S LP+++ ++D + + +E Sbjct: 121 YSIGDGGDFRVAGRATQMLVLSPVDENRYNYHLWLDKKSHLPLKMMVIDNNKKVVENIAF 180 Query: 186 IAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFS------WTPTWLPQGFSEVSSSRR 239 + S + + N+ ++ + E WT LP GF EVS S + Sbjct: 181 ANIEF---LKSQDISWFRPNINNDIAYSINENKNIEETVRKFWTINDLPSGFEEVSYSAK 237 Query: 240 PLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQM--LRTGRRTVSTSVRDNAEITIV 297 + N +YSDGL S+ ++ + Q+ + G + + +I V Sbjct: 238 RYAGL-NAIAHQIIYSDGLSYISIFIHPVAKNQKPQVGSSKRGSSNIHAEYKKGYQILAV 296 Query: 298 GELPPQTAKRIAENIKFG 315 G +P QT I +K Sbjct: 297 GAVPMQTLSYITNKVKLN 314 >UniRef50_Q21IH0 Negative regulator of sigma E activity-like protein n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21IH0_SACD2 Length = 361 Score = 227 bits (579), Expect = 4e-58, Method: Composition-based stats. Identities = 71/368 (19%), Positives = 145/368 (39%), Gaps = 70/368 (19%) Query: 3 QLWFAMSLVTGSLLFSANASA---TPASGALLQQMNLASQSLNYELSFISINKQGVESLR 59 ++ ++++V + S SA T + +L Q+ +++S NY F + ++ LR Sbjct: 2 KIALSLAIVLAVVGVSPAVSALDKTSSVAEILNQLGNSTKSQNYRGEFTYEHDGTIDMLR 61 Query: 60 YRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDF 119 HA +D ++ ++GP + ++ G I G L G + S ++ Sbjct: 62 VVHAVIDGVEYERIYHLNGPEKSFMREGQSIDCVTAGNHL--LRGRRLTLSSGRMVS--- 116 Query: 120 KRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGET 179 + Y F G RIA R +++++ +D RY ++ +D ++ L + + + + Sbjct: 117 --IDQNYQFHMRGEERIAGREALILQLLPKDPYRYGMVLGVDKQTGLLTKAVITEGQKKV 174 Query: 180 LEQFRVIAFNVNQDISSSMQTLA----KANLPPLLSVP---------------------- 213 E+ + ++ +++ D+ K++L PL+ Sbjct: 175 WERIQFVSLSLDDDMGIEAIYPDLATGKSSLAPLVESSMVDGSVVDGSVTTEVPASPEGS 234 Query: 214 ------------------------VGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPI 249 +K P W+P GF S + Sbjct: 235 MIDNSSEASASAEPPANDADQDCRQPAASKAPLQPAWVPNGFVLSDYS------YSDEDG 288 Query: 250 ESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRR-TVSTSVRDNAE---ITIVGELPPQTA 305 Y+DGL FS+ + R T + ++R G ++ TSV + + IT+VGE+P TA Sbjct: 289 HMETYTDGLSVFSIFIGRVTDKPSQAVVRNGATVSLLTSVPSDNQFVTITVVGEVPAVTA 348 Query: 306 KRIAENIK 313 R+ ++++ Sbjct: 349 HRVTQSLR 356 >UniRef50_C5BRN0 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BRN0_TERTT Length = 328 Score = 219 bits (557), Expect = 2e-55, Method: Composition-based stats. Identities = 65/338 (19%), Positives = 126/338 (37%), Gaps = 44/338 (13%) Query: 3 QLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRH 62 + A + + + ++ +L +++ + + NY+ + +E+++ H Sbjct: 9 RFIIASFFLLLLSSRALSVETEMSAEQVLSRLSQSMREQNYQGVVTYEHGGRLETMQATH 68 Query: 63 ARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRL 122 LD ++GP R+ + G +S G + + + + R Sbjct: 69 LVLDGVEFESYSHLNGPERQHARMGRLVSCQTLGGQLLS------GGKFAA--GSAIARF 120 Query: 123 SPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQ 182 +Y F G R+A R V++++ +D RY + +D ES + ++ ++ LE+ Sbjct: 121 HDHYQFYVKGYDRVAGRKVVVMQILPKDNFRYGISLGVDVESGVLLKYLVMQP-NRALER 179 Query: 183 FRVIAFNVNQDISSSMQTLAKAN------LPPLLSVPVGEKAKFSWTPTWLPQGFSEVSS 236 + +AF +N S AN +A W P+W P GF VSS Sbjct: 180 IQFVAFELNPTFSPDEIASITANANGLQPCAEPEPQAQVPEALSEWMPSWAPPGFVHVSS 239 Query: 237 SRRPLPTMDNMPIESRLYSDGLFSFSVNVNR----ATPSS---TDQMLRTGRRTVSTSVR 289 R + I Y+DGL S+SV +N + S + G V S++ Sbjct: 240 KR-----TEQDGIVH-TYTDGLASYSVFINSEVVASDDESARIPQGAAQRGATLVVMSLQ 293 Query: 290 DNAEITIVGE----------LPPQTAKRIAENIKFGAA 317 GE +P TA ++ +++ Sbjct: 294 ------ASGEKVVHVAVVGEVPQVTAAQVLKSVSLTKT 325 >UniRef50_Q0PQN8 MucB (Fragment) n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=Q0PQN8_9GAMM Length = 232 Score = 209 bits (533), Expect = 9e-53, Method: Composition-based stats. Identities = 57/216 (26%), Positives = 95/216 (43%), Gaps = 4/216 (1%) Query: 64 RLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLS 123 D + L+ ++G REV++ I+ P + +++ + L+ D +L+ Sbjct: 3 SEDGQIREHLISLNGAPREVIRDKRSITCVRPESQQISIDKRPPSNKFLDLLPQDLDKLT 62 Query: 124 PYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQF 183 P+Y F ++G RIA +V+ ++ RD RY Y ++D ES LP++ DL+D G+ LEQ Sbjct: 63 PHYAFRTLGTARIAGHQSKVVAIIPRDDYRYGYRFYLDQESALPLKSDLMDEQGQALEQT 122 Query: 184 RVIAFNVNQ---DISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRP 240 + + +I S + L E + W LP GF S SR P Sbjct: 123 MFTSLEIGVAEWNIDESNKQRGITIRKSDLPRSEIESDRPQWHFESLPAGFVVTSRSRVP 182 Query: 241 LPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQM 276 T + I+ + SDGL S S+ + Sbjct: 183 -DTANGGVIDHYVLSDGLASLSIFIEAPRRGGGAGA 217 >UniRef50_B8KRG2 Negative regulator for alginate biosynthesis n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KRG2_9GAMM Length = 265 Score = 191 bits (485), Expect = 3e-47, Method: Composition-based stats. Identities = 56/308 (18%), Positives = 109/308 (35%), Gaps = 52/308 (16%) Query: 14 SLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQL 73 + A+ + + + M A + Y + + Q E + + A L Sbjct: 2 AGPVHADCNLSQTLQDRINTMLGAHSRVAYTGTLLLERNQHREFVDV--RSGNGGSGANL 59 Query: 74 LQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGR 133 +++ PG P +++ + L+ +Y F S Sbjct: 60 RRLNDA---------------PGSPPIAYPSEHVTTV-------EACELAEHYVFASAPG 97 Query: 134 TRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQD 193 + R + RD R+ Y++ +D + LP+RV DG+ LE++ + ++ Sbjct: 98 DTVGGRETLRLSARPRDPLRFGYVMDLDKQFGLPLRVVTATADGQMLERYEFASIEISAT 157 Query: 194 ISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRL 253 SS L + + + LP GF ++S +P+P + Sbjct: 158 PDSSQSRL--------------PQIDSDFALSELPPGFKLIASRTQPMPA--------MI 195 Query: 254 YSDGLFSFSVNVNRATP--SSTDQMLRTGRRTVSTS----VRDNAEITIVGELPPQTAKR 307 SDGL + +V + + L G T R +T+VGE+P TA+ Sbjct: 196 VSDGLAAATVFIESVEQIIQPGEGGLNEGSTVSYTRGVNGPRGGILVTVVGEIPMVTARL 255 Query: 308 IAENIKFG 315 +A+ ++ Sbjct: 256 LADAVRVQ 263 >UniRef50_A0Z442 Sigma factor algU regulatory protein AlgN n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z442_9GAMM Length = 290 Score = 180 bits (456), Expect = 7e-44, Method: Composition-based stats. Identities = 63/330 (19%), Positives = 115/330 (34%), Gaps = 58/330 (17%) Query: 3 QLWFAMSLVTGSLLFSANASATPASG-----ALLQQMNLASQ-------SLNYELSFISI 50 + W LV G+ S +A+ P + + + A + S+ Y + + Sbjct: 2 KFWILALLVWGASSTSVSAADQPDQQTPPSCVMSETLTHAVRGFLAASSSVGYRGTMLVE 61 Query: 51 NKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDS 110 E H ++ L +++ P P S Sbjct: 62 YGGDRE-FIAVHVDPESGENE-LTRLNQA-------------VGPAPRPV--------AS 98 Query: 111 LPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRV 170 LP + L+ YY +A R + RD R +Y++ +D E +P+RV Sbjct: 99 LPRVSPG-PCHLARYYGLAIEPGPAVAGRATYRLSARPRDTLRLAYVMDLDAEFYVPLRV 157 Query: 171 DLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQG 230 +G+ LE++ + +P + GE + LP G Sbjct: 158 LAASPEGQILERYEFADIIFEAKV-----------VPTDDGIRDGELVASKYYLAALPPG 206 Query: 231 FSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVN--RATPSSTDQMLRTGRRTVSTSV 288 F+ V+ R +P++ + SDGL + SV V + S + G T Sbjct: 207 FTVVNQGR--------LPVDFLVLSDGLATVSVFVENQPNSLPSGEGFALRGSSLTYTRG 258 Query: 289 RDNAE-ITIVGELPPQTAKRIAENIKFGAA 317 + +T++GE+P TA+ +AE ++ Sbjct: 259 NAQRQLVTVLGEVPITTARLLAEALRQRGE 288 >UniRef50_D2PMC2 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PMC2_9ACTO Length = 353 Score = 155 bits (391), Expect = 2e-36, Method: Composition-based stats. Identities = 52/308 (16%), Positives = 95/308 (30%), Gaps = 43/308 (13%) Query: 22 SATPASGALLQQMNLASQSLNYELSFISI----NKQGVESLRYRHARLDNRPLAQLLQMD 77 +P++ + L++ A ++Y + I + L HA + Sbjct: 34 EDSPSAISWLERAAAAPDHVSYHGTQIITSWGPHGSSSAMLDIVHAASQGSEI------- 86 Query: 78 GPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIA 137 + + P + F P++ L Y+ + T Sbjct: 87 ----------SVVGSTSPDAKSFVQRASDGER--PTVDGGPLALLKATYELVYRCCTDTI 134 Query: 138 DRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFR-VIAFNV-NQDIS 195 R +I + DGT + W+D + L ++ L DG+ L + + N + Sbjct: 135 GRAAVLIDALRADGT-LAARFWIDKATGLLLQRQLFGADGKALVRATVFTDLKIDNGEFL 193 Query: 196 SSMQTLAKANLPPLLSVPVGEKAKFSWT-PTWLPQGFSEVSSSRRPLPTMDNMPIESRLY 254 + + + P+ V WT T LP + Y Sbjct: 194 GHLPPMLPGGVEPVGLGGVEGLRSQGWTCATALPASLQLYDVHQDKAGGA-----LQFSY 248 Query: 255 SDGLFSFSVNVNRA--TPSSTDQMLRTGRRTVSTSV---------RDNAEITIVGELPPQ 303 SDGLF+ S+ R P++ TG V T+VG+LPP Sbjct: 249 SDGLFNVSLFQQRGTLDPAAVAGFATTGTPGVHVRYGIPSYAVWSSGGIVYTVVGDLPPD 308 Query: 304 TAKRIAEN 311 ++ + Sbjct: 309 LLAQVVDA 316 >UniRef50_D1A972 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1A972_THECD Length = 353 Score = 150 bits (378), Expect = 9e-35, Method: Composition-based stats. Identities = 47/315 (14%), Positives = 90/315 (28%), Gaps = 47/315 (14%) Query: 20 NASATPASGALLQQMNLASQSLNYELSFISIN----KQGVESLRYRHARLD---NRPLAQ 72 A P + LL+ A++ YE ++ + + + H + Sbjct: 38 AAGGDPQALELLRGTAAAARRTPYEGTWTHTTLAAGGRDTSTTKVAHRVESPPSGTSMQS 97 Query: 73 LLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVG 132 + +R + LP L ++L+ Y + Sbjct: 98 ASPLS------ERREELVVT---------------AGGLPGLTPEALEQLARNYTVVRAA 136 Query: 133 RTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNV-N 191 + + R V+ R G + W+D ++ + ++ +LLD G + + Sbjct: 137 DSVVCGRKARVVEAR-RPGGGTAGRFWIDAQTGILLQRELLDETGRVVSSGGFAELRITR 195 Query: 192 QDISSSMQTLAKANLPPLLSVPVGEKAKFSWTP-TWLPQGFSEVSSSRRPLPTMDNMPIE 250 I + + V K W+ LP G + + Sbjct: 196 PRILPQAAAPRARPWREMTAAEVDRLRKQGWSVPQTLPGGLAL---HQVRRSGSGEDGTL 252 Query: 251 SRLYSDGLFSFSVNVNRA--TPSSTDQMLR--TGRRTVSTSVRDNAEI---------TIV 297 YSDGL + SV V R R RTV + T++ Sbjct: 253 HLGYSDGLAAVSVFVQRGRLNVRRLAGWRRATVAGRTVFRREARQRWVVWAGDGYVYTVL 312 Query: 298 GELPPQTAKRIAENI 312 + P T+ + + Sbjct: 313 TDAPQATSDAVVAAL 327 >UniRef50_B5YDF2 Putative uncharacterized protein n=2 Tax=Dictyoglomus RepID=B5YDF2_DICT6 Length = 330 Score = 137 bits (346), Expect = 4e-31, Method: Composition-based stats. Identities = 42/274 (15%), Positives = 91/274 (33%), Gaps = 22/274 (8%) Query: 2 KQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELS-----FISINKQGVE 56 K L+F + ++ L F+ +++ L S + YE F + Sbjct: 3 KSLFFLLIILFVVLTFAV------EPMEIIKNYALNSGRIPYEGIEVSILFAKPDFPRTS 56 Query: 57 SLRYRHARLDNRPLAQLLQMDGP--RREVVQRGNEISY-FEPGLEPFTLNGDYIVDSLPS 113 ++R + + + + + P ++ + Y F+P ++ Sbjct: 57 TVRV---IANGKYVVRRDYLSPPFMLGKINIDNGKFQYDFDPKKNLVRISPSSNAFLNRD 113 Query: 114 LIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLL 173 I + + G R V+ V + + +W+D + +P+R+D Sbjct: 114 EINQRINLIRRNFYAKLEGEEVYLGRKVYVLSVTSVYTKKLVLKLWIDKDKYVPLRIDKY 173 Query: 174 DRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPL--LSVPVGEKAKFSWTPT-WLPQG 230 + DG + + + N N IS + L + + E+ + P G Sbjct: 174 NGDGILVGRVMFVEINFNPKISDELFDLNILKDKDVKIEETRLKEEKLENIDVPLNFPLG 233 Query: 231 FSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVN 264 +S + L ++ Y+DGL S+ Sbjct: 234 YSLIKHYT--LWEKEDRFTHYFKYTDGLNDASLF 265 >UniRef50_O28957 Putative uncharacterized protein n=1 Tax=Archaeoglobus fulgidus RepID=O28957_ARCFU Length = 338 Score = 127 bits (318), Expect = 8e-28, Method: Composition-based stats. Identities = 53/339 (15%), Positives = 122/339 (35%), Gaps = 40/339 (11%) Query: 1 MKQLWFAMSLVTGSLLFSANAS-ATPASGALLQQMNLASQS-LNYELSFISINKQGVESL 58 MK+ L+ L+ S A ++ + ++M + + +++ + + Sbjct: 14 MKR------LLIALLVVSVLAGCVQMSAEEIAKKMQEKEEKIQDLRAEVYVVSEGPMGKM 67 Query: 59 RYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIV---DSLPSLI 115 + + +P L M+ V G+ + ++ + + L Sbjct: 68 EMNYTYIFKKPYK--LYMEDENSIAVSNGSVMWSYDKKNNKVVVFEMNMTKESTPLKFDY 125 Query: 116 YTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDR 175 T K + YYD +G +++ R C V+ + ++ + +W+D E P+RV+ Sbjct: 126 TTLIKEMLEYYDVELLGEEKVSGRDCFVLNLKPKNDRENATKMWVDKEFWFPIRVETSFG 185 Query: 176 DGETLEQFRVIAFNVNQDISSSMQTLAKA--------NLPPLLSVPVGEKAKFSWTPTWL 227 + ++R ++FN D S + LP + + S+ L Sbjct: 186 GIKMYIEYRNLSFNTGVDDSFFEFKPPEGAEVEKFDFKLPKTYESVEEAQKEASFKI--L 243 Query: 228 PQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRAT----PSSTDQMLRTGRRT 283 ++ + T D+ YSDG + ++ + P +++ G + Sbjct: 244 VPSYTAGYELKSVSVTNDSAF---LTYSDGEKALTI-LESTEKSEVPKDFEEVEINGEKA 299 Query: 284 VSTSV---------RDNAEITIVGELPPQTAKRIAENIK 313 + ++ +++I GELP +IAE++ Sbjct: 300 YYGEIFGASVLYIEKNGVQVSISGELPKDELIKIAESLS 338 >UniRef50_Q47SM3 Putative uncharacterized protein n=1 Tax=Thermobifida fusca YX RepID=Q47SM3_THEFY Length = 357 Score = 125 bits (313), Expect = 3e-27, Method: Composition-based stats. Identities = 45/275 (16%), Positives = 80/275 (29%), Gaps = 30/275 (10%) Query: 26 ASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQ 85 A+L++ S L+Y+ + A+L + P Sbjct: 47 DGMAVLRRAAETSVRLSYQGVRVVSWVDST----------GRTETARLNILHQPGV---- 92 Query: 86 RGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIR 145 G +S E L + L + + G T+I R + Sbjct: 93 -GTLVSPLHDTGEGTNLL--VGSTPWGRVGKDVLDVLETNFWVRTEGETQIGQRSAVGVV 149 Query: 146 VVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKAN 205 RD + + W D + L +R ++ D GE + + D ++ + + + Sbjct: 150 AQ-RDNGQVAARFWTDEHTGLLLRREVYDISGEVAQTSVFESIQFGVDAAALAEETRQPD 208 Query: 206 LP------PLLSVPVGEKAKFSWTP-TWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDGL 258 + L + + W L GF V + + I YSDG+ Sbjct: 209 VVSRPWGDELDPQELRQLRDEGWVLPERLLWGFELVEA---RATGEGDERITHLTYSDGI 265 Query: 259 FSFSVNVNRATPSSTD--QMLRTGRRTVSTSVRDN 291 SV R + + RT V D Sbjct: 266 SVISVFTQRGSLGGAAVTGLRRTEEDGALVHVADE 300 >UniRef50_D0WVV8 Sigma-E factor regulatory protein rseB n=1 Tax=Vibrio alginolyticus 40B RepID=D0WVV8_VIBAL Length = 123 Score = 123 bits (310), Expect = 6e-27, Method: Composition-based stats. Identities = 49/122 (40%), Positives = 75/122 (61%), Gaps = 2/122 (1%) Query: 198 MQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSDG 257 M L LP +L++P G+ +W W+P+GF +R + + M +ES+LYSDG Sbjct: 1 MSGLQDVQLPAVLTMPKGDIGTSNWQVGWIPEGFEPNELNRYRMAVTNQM-VESQLYSDG 59 Query: 258 LFSFSVNV-NRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFGA 316 LFSFSV V N+ S Q++R GRRT+ + V EI++VG++PP TA+RIA+++ F Sbjct: 60 LFSFSVYVANKDEHSLKGQLVRQGRRTLHSFVSGQHEISVVGDIPPTTAQRIAQSVTFNV 119 Query: 317 AQ 318 + Sbjct: 120 TK 121 >UniRef50_D2B0P7 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2B0P7_STRRD Length = 341 Score = 122 bits (306), Expect = 2e-26, Method: Composition-based stats. Identities = 50/303 (16%), Positives = 90/303 (29%), Gaps = 43/303 (14%) Query: 4 LWFAMSLVTGSLLFSANASATPASGA-------LLQQMNLASQSLNYELS-FISINKQGV 55 L A ++ G + S +A P LL++ +A ++ Y + +++ Sbjct: 8 LVLAAVMLLGLVAGSPAHAARPDEPEGDDTGLHLLREAAIAGRTRGYSGTQYVTTWG--- 64 Query: 56 ESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLI 115 + L R V G + +P ++ + + Sbjct: 65 -------RSGSGAVSSVLEV-----RNVPGEGLTVHT-QPSGLVQRVDPGTPAGGMSTPS 111 Query: 116 YTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDR 175 T + L+ Y + VG R+ R ++ V DGT + W+D +R +LLD Sbjct: 112 ETMLEVLARNYRVVVVGEGRVCGRPARLVHAVRADGTV-AARYWLDEAGGPVLRRELLDG 170 Query: 176 DGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVS 235 G + + + ++ A L + W G E+ Sbjct: 171 HGRVVHAGAFVDLTLGPARKAAAPVSAAGGLDLGET---PGLLARGWRFPAALPGRLELF 227 Query: 236 SSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRA--TPSSTDQMLRTGRRTVSTSVRDNAE 293 ++ P YSDGL SV V R+ Sbjct: 228 AAHDASPGY-----LYLGYSDGLSVVSVFVQPGVLDEERLQGW--------HARQRNGHT 274 Query: 294 ITI 296 I I Sbjct: 275 IWI 277 >UniRef50_Q58100 Uncharacterized protein MJ0687 n=3 Tax=Methanocaldococcus RepID=Y687_METJA Length = 335 Score = 114 bits (285), Expect = 5e-24, Method: Composition-based stats. Identities = 33/210 (15%), Positives = 82/210 (39%), Gaps = 17/210 (8%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNL---ASQSLNYELSFISINKQGVES 57 M + +SL +F A + + + ++M A +S+ ++ + E+ Sbjct: 1 MNYKYLILSLFLIVGVFFAGCTQQMNADEIAKKMQEKYEAMKSMEADVLITTNIMGQTET 60 Query: 58 LRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYT 117 ++Y++A M+ +V G +Y+ + I L ++ Sbjct: 61 MQYKYAFEKPNKF----YMENDDVLIVCDGK--TYYMYDKKKNQYTKMEIKGELNNMFNP 114 Query: 118 D----FKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLL 173 D K + ++ +G R C V+ +++++ +++D E P+++++ Sbjct: 115 DYGKFIKSMLEKFNVSYLGEKTYDGRKCYVLELISKENPEEKMKMYVDEEYWQPLKIEM- 173 Query: 174 DRDGETLEQFRVIAFNVNQDISSSMQTLAK 203 DG T+E ++ + FNV+ + Sbjct: 174 --DGVTIE-YKNVKFNVDVPDDRFKFVPPE 200 >UniRef50_C1SKR3 Putative uncharacterized protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SKR3_9BACT Length = 250 Score = 112 bits (280), Expect = 2e-23, Method: Composition-based stats. Identities = 29/199 (14%), Positives = 64/199 (32%), Gaps = 20/199 (10%) Query: 116 YTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDR 175 R YY + DR + R+ +++ +D + + +R ++ D Sbjct: 63 PGSLNR--DYYTVTENRGIKYFDRDVVQYDITPVKHDRFRHVLLVDQKKDVVIRKEVYDT 120 Query: 176 DGETLEQFRVIAF--NVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSE 233 +G+ + F + + + + + ++ F+ G+ Sbjct: 121 NGKLV--FSFTSLDRESTEHVDDADSHPDPDSDAVHIAAASVHHDAFN--------GY-F 169 Query: 234 VSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAE 293 V++ R +SDGL FS+ + T+Q + Sbjct: 170 VTADRELKDGTK-----HISFSDGLNRFSIFRKKINTEPTEQKRILYGNYIYRKKVGKEL 224 Query: 294 ITIVGELPPQTAKRIAENI 312 T+VG +P + + NI Sbjct: 225 FTVVGTIPFEEMDDLINNI 243 >UniRef50_A3CWC6 Outer membrane lipoprotein-sorting protein-like protein n=1 Tax=Methanoculleus marisnigri JR1 RepID=A3CWC6_METMJ Length = 362 Score = 110 bits (276), Expect = 5e-23, Method: Composition-based stats. Identities = 38/272 (13%), Positives = 80/272 (29%), Gaps = 41/272 (15%) Query: 21 ASATPASGALLQQMNLASQS-LNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGP 79 A+ P + + + A + ++ + ++R +N L L D Sbjct: 21 AADPPPADEIAARFIAAEEQATDFTATVAVTAGSENVTVRLFRKAPENYRLEFLEPADLA 80 Query: 80 RREVVQRGNEISYFEPGLE-PFTLNGDYIVDSLPSLIYTDFKRLSPYY-----------D 127 VV G ++P T+ G Y+ + Y + Y + Sbjct: 81 GTVVVSNGTRKWRYDPATRTALTVAGPYMNAAFSGPPYPGWAEGVRGYAETVAGSLSEQN 140 Query: 128 FISVGRTRIADRLCEVIRVV-------ARDGTR---YSYIVWMDTESKLPMRVDLLDRDG 177 +G I R ++ V A R + + VW+D E+ L + +++ +G Sbjct: 141 ASYLGSETIGGRTAYILEVTGDSKIFEAPTRYREAVHRFRVWIDAETWLLLGLEMYGNEG 200 Query: 178 ETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAK-FSWTPTW---------- 226 + + N + + + +P F W+ Sbjct: 201 NLILSAEYTDPSANTGLPDDIFVFDPPAGVEVRPMPTAAITPLFLWSIQDARRYGVEMPS 260 Query: 227 -LPQGFSEVSSSRRPLPTMDNMPIESRLYSDG 257 LP+G+ + ++DG Sbjct: 261 YLPEGYVF------KEGVHLPGAYTTLRFTDG 286 >UniRef50_B1HWT8 Putative uncharacterized protein n=2 Tax=Bacillaceae RepID=B1HWT8_LYSSC Length = 356 Score = 106 bits (266), Expect = 8e-22, Method: Composition-based stats. Identities = 48/355 (13%), Positives = 113/355 (31%), Gaps = 74/355 (20%) Query: 11 VTGSLLFSA---NASATPASGALL-QQMNLASQSLNYELSFISINKQGVESLRYRHARLD 66 + + FS N A+ + ++ Q + + Q L Y + + + + D Sbjct: 12 LLAVMTFSLVGCNTEASYSPQEIIEQTLQESKQPLTYYGEYTLDMGELGGKAQVKEWVKD 71 Query: 67 NRPLAQLLQMDGPRREVVQRGNEISYFE-----------PGLEPFTLNGDYIVDSLPSLI 115 ++ +G V+ +E+ ++ P E L + Sbjct: 72 KYRRIEMKGDNGEHVITVKTDSELISYDVTEHTAFKMAYPQGELDGLRSPR------EEV 125 Query: 116 YTDFKRLSPYYDFISVGRTRIADRLCEVIRV-VARDGTRYS-YIVWMDTESKLPMRVDLL 173 F + ++ G ++A R I + + + W+D ++ L +++ Sbjct: 126 QLVFNLVKDTHEIKIAGEEKVAGRDTYKIVAKTTKTESLFGDIEAWIDKKTWLMLKMKSD 185 Query: 174 DRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSE 233 + + + ++ NV++ I L +LP +++ S +W Sbjct: 186 NAGNQIITEY--SKINVDEKIDDQQFIL---DLPEDVTIQEISGEDTSALISW------- 233 Query: 234 VSSSRRPLPTMDNMPIESRL----------------YS-----DGLFSFSVNVNRATPSS 272 +++ L +P E+ L YS DG +F + + +A S Sbjct: 234 -DEAKQQLRKFLMVPQENALSIDKISMVKGLEDRPEYSFDFGLDGQPAFFITIFKADESM 292 Query: 273 TD----------QMLRTGRRTV-------STSVRDNAEITIVGELPPQTAKRIAE 310 ++ + + + + +IVGE P T + + Sbjct: 293 SEIGPILNEKEMDIRGQKGTVMDDKNFRSIAWQENGYQYSIVGENPELTIEDLIS 347 >UniRef50_Q2BJ05 Putative sigma-E factor regulatory protein RseB (Fragment) n=1 Tax=Neptuniibacter caesariensis RepID=Q2BJ05_9GAMM Length = 251 Score = 102 bits (255), Expect = 2e-20, Method: Composition-based stats. Identities = 28/169 (16%), Positives = 62/169 (36%), Gaps = 24/169 (14%) Query: 151 GTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLL 210 R +Y + ++ S +R +E N ++ Sbjct: 103 DNRPAYTLPANSVSGDIVRAQ-FGNRNMIVE---------NGQEPEIIRLSQGIERYIDQ 152 Query: 211 SVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIES---RLYSDGLFSFSVNVNR 267 + + + +W +WLP+GF M + +++S+G SF+V V Sbjct: 153 HEHMLSEKQSNWQASWLPEGFR----------GMKREVMAHAEVQVFSNGRNSFTVCVED 202 Query: 268 ATPSS-TDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENIKFG 315 + + + ++G + +T+VG++P A+RIA +++ Sbjct: 203 YGRQTVPEGVAQSGEMVAVGKRIGDQFVTVVGDVPLMIAERIASSVERR 251 >UniRef50_C1YKW1 Putative uncharacterized protein n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YKW1_NOCDA Length = 360 Score = 102 bits (254), Expect = 2e-20, Method: Composition-based stats. Identities = 46/266 (17%), Positives = 74/266 (27%), Gaps = 32/266 (12%) Query: 16 LFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQ 75 + A ++L + A + Y + E A+ Sbjct: 35 PTAVPAEGEDDGMSVLHRAAAAEDEVAYSAVREVTGPEDTE----------GGQSAEGRT 84 Query: 76 MDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTR 135 + R VV R E P + + +L SL L Y G R Sbjct: 85 L---RVRVVNRPGEGIALAPVGDEESALVVDASSALESLDDRLLSMLGDIYAVSDAGPAR 141 Query: 136 IADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDI- 194 + R ++ DGT W+DT + L + + GE FR+ + ++ Sbjct: 142 LDGREARLVEARHADGTVAG-RFWVDTATGLLLGRTVYGTGGEHAIGFRLTGLELGEEDW 200 Query: 195 -------SSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNM 247 S TL + L + +W V + Sbjct: 201 PEEALGDSPWSDTLTRTERADLRAEEWPLPEYLAWNL-------RLVDA---RSTEHGGH 250 Query: 248 PIESRLYSDGLFSFSVNVNRATPSST 273 + +YSDGL SV R S Sbjct: 251 RVVHAVYSDGLSQVSVFTQRGKLGSK 276 >UniRef50_UPI0001C421AC hypothetical protein BpOF4_12315 n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AC Length = 347 Score = 101 bits (251), Expect = 4e-20, Method: Composition-based stats. Identities = 41/235 (17%), Positives = 87/235 (37%), Gaps = 34/235 (14%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSL-----------NYELSFIS 49 MK++ +L T F+A S + ++++ A ++L N++ Sbjct: 1 MKKIKAVFTLATAIF-FTAGCS-LEDTDEIIEKAVEAQENLESYYAEVSSTFNFKGE--- 55 Query: 50 INKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTL--NGDYI 107 N ES Y+ + + DG + G E ++P T+ D + Sbjct: 56 NNGNENESSTYKEWNVKPDKY-RTEMEDG--YLHISNGKESWSYDPHENTVTVFETSDEL 112 Query: 108 VDSLPS---LIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDG------TRYSYIV 158 + PS +I + D +G+ IA R + + +++G +Y + Sbjct: 113 AEETPSEGEIIREILTEMLDSTDVTVMGKETIAGRSTIHLALASKEGEEEDFLGEVNYDI 172 Query: 159 WMDTESKLPMRVD-LLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSV 212 W+D E+ +P+++ + D +E N DI ++ +L++ Sbjct: 173 WVDEETYMPLKMMWISDEFSSAVE---YTHIEYNIDIDETLFQFDIPEDAEVLTI 224 >UniRef50_Q1IW19 Putative sigma E regulatory protein, MucB/RseB n=2 Tax=Deinococcus RepID=Q1IW19_DEIGD Length = 264 Score = 100 bits (250), Expect = 6e-20, Method: Composition-based stats. Identities = 33/241 (13%), Positives = 71/241 (29%), Gaps = 28/241 (11%) Query: 73 LLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVG 132 L + + + E+S F P P ++ ++ ++ ++ Sbjct: 34 LAALQQAQTLAARGTAEVSVFFP---PRSVPTRQTNAL--PVVPFRPALIAAHFTVKRSE 88 Query: 133 RTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQ 192 +A R + + G + +W+D +P+ + DG + + V Sbjct: 89 APSLAGRDVTRFDLTPKVGQAARWTIWVDRTWNVPLAFEERMPDGTLARRAVFTS--VRA 146 Query: 193 DISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESR 252 + + L +P L V P GF+ + R Sbjct: 147 QPARVQRPL--LPVPAGLRAAVLTAL-PGVRF---PPGFTPAAVKTRGNGLE-------I 193 Query: 253 LYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENI 312 SDG+ ++ + + + + N I +VG LP + I Sbjct: 194 TLSDGINVLALVIAPRGVRAAPGVA--------SRRVGNRFIWLVGNLPDAPLRSALAGI 245 Query: 313 K 313 + Sbjct: 246 Q 246 >UniRef50_Q8PY42 Conserved protein n=6 Tax=Methanosarcina RepID=Q8PY42_METMA Length = 223 Score = 100 bits (249), Expect = 8e-20, Method: Composition-based stats. Identities = 28/220 (12%), Positives = 74/220 (33%), Gaps = 11/220 (5%) Query: 8 MSLVTGSLLFSANASATPASGALLQQMNL---ASQSLNYELSFISINKQGVESL--RYRH 62 M ++ LF + + ++ + +Q+ + Q +Y + S + + R Sbjct: 1 MLILLFPALFVSGCTEELSAEKIAEQIQEKEDSIQDYSYTMQMTSYFGEETQESETRVLQ 60 Query: 63 ARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDF-KR 121 + + + + + G + ++P L + Y Sbjct: 61 KKPNKSKAIAIEPEEEAGTIAISDGEFMWTYDPKTNTVIKMEMPNTPVLGEIDYVGIISE 120 Query: 122 LSPYYDFISVGRTRIADRLCEVIRVVARDG-----TRYSYIVWMDTESKLPMRVDLLDRD 176 L + +G I R +++ ++ +W+D E+ +P+R ++ + D Sbjct: 121 LLNETEVSLLGMEEIEGRPAYLLKTSPKEEGEGIQLVDEMKLWVDKETWMPLRYEMYNSD 180 Query: 177 GETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGE 216 G+ + + ++ +N I S L +V + Sbjct: 181 GDLVIELEILDLEINTGIPDSEFVFEVPEGATLKTVDLDS 220 >UniRef50_B8FZS6 Putative uncharacterized protein n=2 Tax=Desulfitobacterium hafniense RepID=B8FZS6_DESHD Length = 530 Score = 96.6 bits (239), Expect = 1e-18, Method: Composition-based stats. Identities = 40/233 (17%), Positives = 73/233 (31%), Gaps = 31/233 (13%) Query: 2 KQLW----FAMSLVTGSLLFSANASATPASGALLQQMNLASQSL-NYELSF----ISINK 52 K+ + FA S++ LLFS + + ++ M + + L NY + Sbjct: 104 KKFFPWAGFAASILVFLLLFSPW---SGSKQTIVMAMEESVKQLQNYHGVLEKVSTNEAG 160 Query: 53 QGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLP 112 + +R D A DG V G P + TL Y Sbjct: 161 ERQVLIR-TEIWSDGENYA-TKTQDG--LLTVNNGETRWSTNPAAKEITLLPVY------ 210 Query: 113 SLIYTDFKRLSPY-----YDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLP 167 L DF Y +G IA R I + G YS +W+D + LP Sbjct: 211 -LDPHDFDLQKEAAKALRYPHQIIGDDTIAGRAATRIEIQPPGGLPYS--LWIDQNTHLP 267 Query: 168 MRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKF 220 +++ + + ++ N +++ + ++ + Sbjct: 268 IQLQTAMQKS-LQTTYTYVSLETNTFLATDIFAYHPPQDYKVIDNNPDKVMAS 319 >UniRef50_C8S7Q8 Putative uncharacterized protein n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8S7Q8_FERPL Length = 351 Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 32/224 (14%), Positives = 91/224 (40%), Gaps = 14/224 (6%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLN-YEL--SFISINKQGVES 57 M++++ ++ +L+F + ++ + +++ S+N ++ S+ I + G + Sbjct: 28 MRKIF----VILATLVFVSAC-TQMSAEEIAKKLEEKYDSVNDFKGKISYTMIGESGNIT 82 Query: 58 LRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYT 117 + Y + + ++ + +V G ++ ++ + + P Sbjct: 83 MEYEYVFKKPNKI--WMRNEKAGTLIVSNGEKMWIYDEKKNEVFVMNVSKMPVNPDY-GK 139 Query: 118 DFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDG 177 K + Y+ +G R+A+R C VI + +++ + S +W+D E P+R++ Sbjct: 140 LVKEMLEMYEVKLLGVERVAERECYVIELKSKEMNQ-SAKMWVDKEFWYPLRIESESYGI 198 Query: 178 ETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFS 221 + + +++ + FN +S + + + KF Sbjct: 199 KIITEYKNVEFNTG--VSDELFEFKIPEGAKVKTEEDFGIRKFE 240 >UniRef50_C0BGM9 Putative uncharacterized protein n=1 Tax=Flavobacteria bacterium MS024-2A RepID=C0BGM9_9BACT Length = 212 Score = 95.4 bits (236), Expect = 2e-18, Method: Composition-based stats. Identities = 28/186 (15%), Positives = 66/186 (35%), Gaps = 19/186 (10%) Query: 1 MKQLWFAMSLVTGSLLFS-ANASATPASGALLQQMNL---ASQSLNYELSFISINKQGVE 56 MK + + L F +A + A+ LL +++ A ++L+++ S++ N+Q Sbjct: 1 MKNIVY---LCIAFFWFHFTSAQTSEAAVKLLDEVSENIAAFENLSFDFSYVLENRQEKI 57 Query: 57 SLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIY 116 +L+ + E + G + P E T++ + Sbjct: 58 KQETSGTVTVEGSRYKLMYL---GAEQLFDGEKTYTVVPENEEITISSPEEGEDFGINPS 114 Query: 117 TDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRD 176 YD+ + + R + ++++ D + S L + +D+L + Sbjct: 115 KLLNFYKEGYDYQWDIKQNVLGRTIQFVKLIPSDENK--------EVSYLLLGIDVLKKS 166 Query: 177 G-ETLE 181 +E Sbjct: 167 IYRLIE 172 >UniRef50_Q12Z81 Putative uncharacterized protein n=1 Tax=Methanococcoides burtonii DSM 6242 RepID=Q12Z81_METBU Length = 360 Score = 94.6 bits (234), Expect = 4e-18, Method: Composition-based stats. Identities = 34/216 (15%), Positives = 69/216 (31%), Gaps = 12/216 (5%) Query: 13 GSLLFSANA-SATPASGALLQQMNLA---SQSLNYELSFISI-NKQGVESLRYRHARLDN 67 LFSA + + ++M + ++ L Q + + D Sbjct: 14 CCALFSAGCVDEQLTAEEIAEKMQQKNDLIEDSSFTLYMTMSLMGQESVMEQDMFQKKDK 73 Query: 68 RPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDF-KRLSPYY 126 + VV G + ++P +D + Y D + Sbjct: 74 MRSVTKQPAEQAGTIVVSNGETMWTYDPQQNSVVAMEMPDIDLYQEINYGDIIAQFLNES 133 Query: 127 DFISVGRTRIADRLCEVIRVVARDG------TRYSYIVWMDTESKLPMRVDLLDRDGETL 180 D G +I R ++ + ++ + VW+D E+ +P++ D+ D DG + Sbjct: 134 DVSFSGMKKIEGRNTFIMNLEPKEEVPSAGPFTGNIKVWVDAETWMPLKYDMYDTDGNVI 193 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGE 216 V VN IS + + ++ + E Sbjct: 194 VSVEVRNLQVNTGISDEVFEFDIPEGVEVSTLNLNE 229 >UniRef50_Q8PYI1 Conserved protein n=2 Tax=Methanosarcina RepID=Q8PYI1_METMA Length = 259 Score = 91.6 bits (226), Expect = 3e-17, Method: Composition-based stats. Identities = 36/256 (14%), Positives = 81/256 (31%), Gaps = 19/256 (7%) Query: 3 QLWFAMSLVTGSLLFSANASATPASGALLQQM---NLASQSLNYELSFISINKQGVESLR 59 + ++ V L S ++ ++ QM +++ +Y + S + Sbjct: 8 KSILMLAFVAIILFASGCTEENLSAEEIVTQMLDKQNSTEDYSYTMYMTSYAGGKTAEIE 67 Query: 60 YRHARLDNRPLAQLLQMDG--PRREVVQRGNEISYFEPG-LEPFTLNGDYIVDSLPSLIY 116 Y+ ++ G + +V G + P E + I + S Sbjct: 68 YKTMFKKPNMSKDIITEPGKKDQIIIVSDGEFAWSYIPATNEVIKMELPDIPEPTKSDCI 127 Query: 117 TDFKRLSPYYDFISVGRTRIADRLCEVIRVVARD-GTRYSY----IVWMDTESKLPMRVD 171 + + I R ++ +++ Y +W+D E+ +P+R + Sbjct: 128 NAIGEFLNSTNVTLLRVENIDGRTAYLLETSSKEKDGAYPMINRTKIWVDKETWMPLRYE 187 Query: 172 LLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGF 231 + D DG + + VN I S + + ++ + E + Sbjct: 188 MYDGDGNLTAKIEIRDLKVNSGIPDSEFKFEIPDGAEVKTLDIKEIKSS--------EKL 239 Query: 232 SEVSSSRRPLPTMDNM 247 E+ SS +P P Sbjct: 240 KEIKSSEKPSPEEARE 255 >UniRef50_A4X5A9 Putative uncharacterized protein n=3 Tax=Micromonosporaceae RepID=A4X5A9_SALTO Length = 371 Score = 88.5 bits (218), Expect = 3e-16, Method: Composition-based stats. Identities = 35/292 (11%), Positives = 80/292 (27%), Gaps = 62/292 (21%) Query: 12 TGSLLFSANASATP---ASGALLQQMNLASQSLNYELSFISINK---------------- 52 F+A A + ++ LL + A + + + Sbjct: 34 AALGRFAAEAEPSLPPRSAAQLLVDLQTA-RFEGLSGTVVQRADLGLPPIAGLVAADGPA 92 Query: 53 ---QGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEP--GLEPFTLNGDYI 107 G +LR H+ D + +A + + +R+ ++ G ++ + + + Sbjct: 93 SLLTGSHTLRVWHSGPDQQRIALVDTL--GQRDFIRNGRDVWLWNSRTNTATHRVLPEGK 150 Query: 108 VDSLPSLIYTDFKR--------LSPYYDFISVGRTRIADRLCEVIRVVARD--GTRYSYI 157 + P+ + + + P + +A R + + RD + Sbjct: 151 EAANPAEMPATPQEAAAQALAAVDPTTEVSVGRSATVAGRDAYELVLTPRDAASLVHQVR 210 Query: 158 VWMDTESKLPMRVDLLDRDG-ETLEQFRVIAFNV-NQDISSSMQTLAK----------AN 205 + +D + LP+R ++ G + + D Sbjct: 211 IAIDATAHLPLRFEVFAAGGDRPAFELAFTQIDYARPDADQFTFNPPPDVQVTEKKGGWE 270 Query: 206 LPPLLSVPVGEKA---------KFSWTPTWLPQGFSEVSSSRRPLPTMDNMP 248 P P WT T L ++ RP ++ P Sbjct: 271 HPEQSEQPGPTNDGGHPDLRTVGTGWT-TVLVA---KIDEVERPTAAAEDAP 318 >UniRef50_D1XCD9 Outer membrane lipoprotein-sorting protein-like protein n=5 Tax=Streptomyces RepID=D1XCD9_9ACTO Length = 410 Score = 88.1 bits (217), Expect = 3e-16, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 51/182 (28%), Gaps = 19/182 (10%) Query: 53 QGVESLRYRHARLDNRPLAQLLQMD-GPRREVVQRGNEISYFEPGLEPF---TLNGDYIV 108 G +LR D +L +D G +V G+++ ++ + G Sbjct: 124 SGTHTLRL---AADGPDRQRLSLLDKGSEYSIVHNGDDVWAYDSESDAVFHQRAEGGAQD 180 Query: 109 DSLPSLIYTDFKRLS--------PYYDFISVGRTRIADRLCEVIRVVARDGTRY--SYIV 158 + K ++ G R+A R + + + S V Sbjct: 181 GPAHKDVPGTPKEMAEKALDAAGDTTSVTVDGTARVAGRDAYQLLIKPKQSGSTVGSVRV 240 Query: 159 WMDTESKLPMRVDLL-DRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEK 217 +D E+ +P++ L G+ + + +S + + Sbjct: 241 AVDAENGVPLKFTLAPSGGGKAVVDAGFTQVDF-AKPDASSFSFTPPKGAVVTEADELAA 299 Query: 218 AK 219 Sbjct: 300 GA 301 >UniRef50_UPI0001B543E2 hypothetical protein SSPB78_20494 n=1 Tax=Streptomyces sp. SPB78 RepID=UPI0001B543E2 Length = 402 Score = 88.1 bits (217), Expect = 4e-16, Method: Composition-based stats. Identities = 24/186 (12%), Positives = 54/186 (29%), Gaps = 18/186 (9%) Query: 48 ISINKQGVESLRYRHARLDNRPLAQLLQM-DGPRREVVQRGNEISYFEPGL-EPFTL--- 102 ++ G +LR D +L + D V++ G ++ + L Sbjct: 118 LTELASGTHTLRL---AADGPERQRLSILEDAAEYSVIRDGARAWAYDSASDKAVRLDVP 174 Query: 103 -----NGDYIVDSLPSLIYTD-FKRLSPYYDFISVGRTRIADRLCEVIRVVARD--GTRY 154 P + K + + G R+A R + + + T Sbjct: 175 GSEHAERSPYTALTPQELADRALKAVDAHTTVRVDGTARVAGRDAYQLVIEPKQSGSTVK 234 Query: 155 SYIVWMDTESKLPMRVDLLDRD-GETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVP 213 + + +D + P+R L RD G+ + + + ++ + + Sbjct: 235 AVRILVDARTGTPLRAALTARDGGKPVVEAGFTKVSFTA-PAAKTFSFTPPKGTEVTEPK 293 Query: 214 VGEKAK 219 A Sbjct: 294 KEAPAD 299 >UniRef50_Q8PY40 Conserved protein n=1 Tax=Methanosarcina mazei RepID=Q8PY40_METMA Length = 367 Score = 85.8 bits (211), Expect = 2e-15, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 66/238 (27%), Gaps = 34/238 (14%) Query: 8 MSLVTGSLLFSANASATPASGALLQQMNL----------ASQSLNYELSFISINKQGVES 57 + LV +L S ++ ++ +M +Y + + Sbjct: 2 LVLVILALFTSGCTERELSAEEIVSRMMEKQGSIQDYSYTMHMTSYIGKQVVE-NEFNSI 60 Query: 58 LRYRHARLD-----NRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLP 112 + H + + L+ DG R + PG L Sbjct: 61 YKKPHMMKNFIKEPGKEEETLVLSDGEFR---------WTYIPGTNTVMKTKIPDTPELN 111 Query: 113 SLIYTDFKRLS-PYYDFISVGRTRIADRL-CEVIRVVARDGTR----YSYIVWMDTESKL 166 Y +++ + +G + R ++ + YS VW+D E+ + Sbjct: 112 ENDYLLLVKIALNDTNLSMLGTEEVEGRKKAYLLEATPKKTGEQVPEYSMKVWIDKETWM 171 Query: 167 PMRVDLLDRD---GETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFS 221 + ++ D + + + VN I S + ++ E + Sbjct: 172 FLGYEMYDSSESNKTLISKVEIRDLKVNTGIPDSEFVFKIPEGATVQTIETIETVEHG 229 >UniRef50_UPI0001AED6DA hypothetical protein SalbJ_11848 n=1 Tax=Streptomyces albus J1074 RepID=UPI0001AED6DA Length = 433 Score = 84.6 bits (208), Expect = 4e-15, Method: Composition-based stats. Identities = 27/188 (14%), Positives = 63/188 (33%), Gaps = 19/188 (10%) Query: 48 ISINKQGVESLRYRHARLDNRPLAQLLQMDGP-RREVVQRGNEISYFE-----------P 95 ++ G +LR D +L +DG +++ G++ ++ Sbjct: 120 LTSLASGTHTLRV---AGDGPDRQKLTFVDGADEYSLIRDGDQAWAYDGSTGEALHTKDA 176 Query: 96 GLEPFTLNGDYIVDSLPSLIYT-DFKRLSPYYDFISVGRTRIADRLCEVIRVVARD--GT 152 G + D++ D P + T G T +A R + + +D T Sbjct: 177 GAKGDRPADDHVSDMSPKELATKALDAADETTRVTVDGTTTVAGRDAYRLALTPKDSGST 236 Query: 153 RYSYIVWMDTESKLPMRVDLLDRD-GETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLS 211 + + +D E+ P++ + D G+ + + + + + A + Sbjct: 237 VKAVRIAVDAETGTPLKFTVAPSDGGKAIVDAGFSKIDFARPSTGTFAPPKDAKITESKE 296 Query: 212 VPVGEKAK 219 + G+ A Sbjct: 297 LAPGDAAP 304 >UniRef50_Q8PW79 Conserved protein n=4 Tax=Methanosarcinaceae RepID=Q8PW79_METMA Length = 392 Score = 81.2 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 34/277 (12%), Positives = 90/277 (32%), Gaps = 40/277 (14%) Query: 19 ANASATPASGALLQQMNLASQSL-NYELSFISINKQGVESLRYRHARLDNRPLAQLLQMD 77 +++ P++ ++ M + SL +Y + + ++ L ++ + Sbjct: 34 VSSNTQPSAEEIVSSMQMGMDSLEDYSFTMYVNSTSRQQNPEVHEVIWKKPDLMKMTILS 93 Query: 78 -GPRREVV--QRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYD------- 127 EV+ G+ + T+ I D L + + + + Sbjct: 94 PDKDTEVIMASDGDFQWIYSSESR--TVFKTEISDDFNDLKLFEPDVYAEFLNGIILNGK 151 Query: 128 -FISVGRTRIADRLCEVIRVVARDGT---RYSYIVWMDTESKLPMRVDLLDRDGETLEQF 183 +G I + V+ + + ++ +W+D E+ + +R ++ D + Sbjct: 152 LPSLLGTENIDGKNAYVLELTPSEKNESLQWKSKIWVDRENWMLLRSEIYDNKENIYLEI 211 Query: 184 RVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFS----------------WTPTWL 227 + +N I S + + + + + TP +L Sbjct: 212 EIRDMKLNTGIPDSEFEFKVPDGAQVKVLGSEDFKNETEKMTLEEAKQFIDFEILTPEYL 271 Query: 228 PQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFSFSVN 264 P+G+ S + + + P + ++S FS+ Sbjct: 272 PEGYEFNYSM---VSSSKDTPYSTFVHS----GFSIF 301 >UniRef50_B9PFG8 Predicted protein (Fragment) n=9 Tax=cellular organisms RepID=B9PFG8_POPTR Length = 283 Score = 81.2 bits (199), Expect = 5e-14, Method: Composition-based stats. Identities = 38/229 (16%), Positives = 70/229 (30%), Gaps = 34/229 (14%) Query: 34 MNLASQSL-NYELSF--ISINKQGVESLR-YRHARLDNRPLAQLLQMDG--PRREVVQRG 87 M A + + Y + N G E+L+ R D+ + ++ G V G Sbjct: 1 MEQAYKEVKAYHGILSIVETNLNGEETLQAMREVWADSEGRYYVKELQGFQKGLITVNNG 60 Query: 88 NEISYFEPGLEPFTL-NGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRV 146 + P E + + + K +VG +A R V V Sbjct: 61 EKKWQVSPAEEQVYIFPSFPDPYKFTLELGNEIKDAKNAEQIKAVGEEMVAGRETSVFEV 120 Query: 147 VARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANL 206 + R G SY +W+D E+ LP++ + + + +I + + Sbjct: 121 LPRGGE--SYKIWIDKETNLPLQKESAMM-NAIQYRVTYTSIEFGDNIPGELLAYS---- 173 Query: 207 PPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYS 255 LPQGF E+ + E+ ++ Sbjct: 174 --------------------LPQGFKEIDKNPELQVGSVEEAAETAGFT 202 >UniRef50_C5SBY0 Putative uncharacterized protein n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SBY0_CHRVI Length = 256 Score = 80.4 bits (197), Expect = 8e-14, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 66/208 (31%), Gaps = 30/208 (14%) Query: 67 NRPLAQLLQMDGPRREVVQRGNEI----SYFEPGLEPFTLNGDYIVDSLPSLIYT----- 117 ++ M +EV++ ++ P + + + + P + Sbjct: 51 GANRMRIE-MSHQGQEVIRIHDQTRQMEWMLFPDRQTYMERSVPMGAAAPGQMPAPSAET 109 Query: 118 DFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIV----WMDTESKLPMRVDLL 173 + + + G +A R + TR + W+D E LP++ + Sbjct: 110 NPCQGIEGLNCRRAGEEDVAGRRAVKWEMS---MTREGQTLTGAQWLDVERGLPLKYQM- 165 Query: 174 DRDGETLE-QFRVIAFNVNQDISSSMQTLAKANLPPLLSVPV-GEKAKFSWTPTWLPQGF 231 DG+++E + + + T N P S+ + K + P GF Sbjct: 166 -PDGQSMELRMLGTESIAGRTVEKWEMTTTVPNESPAQSLQWYDPQLKLAVR-EEFPGGF 223 Query: 232 SEVSSSRRPLPTMDNMPIESRLYS--DG 257 R L + P L+S DG Sbjct: 224 V------RELTNVQVGPQPEALFSVPDG 245 >UniRef50_Q6AMB5 Putative uncharacterized protein n=1 Tax=Desulfotalea psychrophila RepID=Q6AMB5_DESPS Length = 245 Score = 80.0 bits (196), Expect = 1e-13, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 77/207 (37%), Gaps = 20/207 (9%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQ----MNLASQSLNYELSFISINKQGVE 56 MK + ++A P+ +L++ M +Q + + S Sbjct: 1 MKTFIIIALFFISTSSYAAL----PSGLEVLERVDKNMTSDTQIIVSRMIIHSRRGTRTV 56 Query: 57 SLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIY 116 + R L ++++ + + + P + +++ SL+ Sbjct: 57 KSKSWSQRDKRSYTEYLAPARERGTKMLKLEDRLWMYSPTTDRTIQISGHMLRQ--SLMG 114 Query: 117 TDFK--------RLSPYYDFISVGRTRIADRLCEVIRVVAR--DGTRYSYIVWMDTESKL 166 +D RLS Y G IA+R C ++ ++A+ D +S ++W+D E + Sbjct: 115 SDLSYEDMMENPRLSEIYQAEVKGTEIIAERPCWLLSLLAKRSDVAYHSRLIWVDQELSV 174 Query: 167 PMRVDLLDRDGETLEQFRVIAFNVNQD 193 P+R +L + G+ L++ F + Sbjct: 175 PLREELYAKSGKLLKKTEFKDFKQIGE 201 >UniRef50_A7K0G4 Outer membrane lipoprotein-sorting protein n=28 Tax=Proteobacteria RepID=A7K0G4_VIBSE Length = 263 Score = 78.9 bits (193), Expect = 2e-13, Method: Composition-based stats. Identities = 26/171 (15%), Positives = 50/171 (29%), Gaps = 33/171 (19%) Query: 51 NKQGVESLRYRHARLDNRPLAQLLQM-------DG--------PRREV-----VQRGNEI 90 V +++ +L+++ DG R+V + + + Sbjct: 44 WGDSVATMKMILRNAQGESSTRLMRLQSLEVEDDGDKGLTIFDEPRDVKGTAFLNHSHTV 103 Query: 91 -----SYFEPGLEPF-TLNGDYIVDSL--PSLIYTDFKRLS-PYYDFISVGRTRIADRLC 141 + P L+ ++ Y D Y F + I + Sbjct: 104 GADDQWLYLPALKRVKRISSRNKSGPFMGSEFAYEDLSSFEIEKYRFNYLKDDTINGQDV 163 Query: 142 EVIRVVARDGTRYSYI---VWMDTESKLPMRVDLLDRDGETLEQFRVIAFN 189 VI + D Y VW+D P++V+ DR G L+ + Sbjct: 164 FVIEQIPTDKNS-GYTKQTVWLDKAHYRPLKVEFYDRKGSLLKTLSFSDYK 213 >UniRef50_Q8TI29 Putative uncharacterized protein n=1 Tax=Methanosarcina acetivorans RepID=Q8TI29_METAC Length = 392 Score = 78.1 bits (191), Expect = 4e-13, Method: Composition-based stats. Identities = 34/313 (10%), Positives = 82/313 (26%), Gaps = 68/313 (21%) Query: 6 FAMSLVTGSLLFSANASATP-ASGALLQQMNL---ASQSLNYELSFISINKQGV------ 55 + L+ LF + + +QM + +Y + S + Sbjct: 11 LVIMLLITLTLFVSGCQEQELDVEDIAEQMQEKDAGIEDYSYTMYITSCAGAEIWEDKWE 70 Query: 56 ----------ESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFT-LNG 104 ++ + QL V G + PG+ + + Sbjct: 71 GQIEIMYKKPGMMKTHSKNIGGGGSEQLT---------VSDGEFSWSYTPGINTVSKVKL 121 Query: 105 DYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSY-------- 156 + S + + + + +A R ++ V + G + Sbjct: 122 PEYEEQTKSDYMSVIEYFLNQTEVTLLREEELAGRSVYLLEAVPKLGGGEATEDDEDEDE 181 Query: 157 -------IVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPL 209 +W+D E +P++ + D G +++ ++ +N I S + Sbjct: 182 ELSPGPTKIWVDKELWMPLKYETYDSKGNLIQKTEILDLKINTGIPDSEFEFEVPEGAEV 241 Query: 210 LSVPVGEKAKFS---------------------WTPTWLPQGFSEVSSSRRPLPTMDNMP 248 +++ P +LP+G++ S R Sbjct: 242 ITMESAPVTLPGDFEKPGEVPIEEIEEHAGFEPLVPEYLPEGYAFSHSMSRNKGEAAPDG 301 Query: 249 IESRLYSDGLFSF 261 + + L Sbjct: 302 QVYEIVT--LTYV 312 >UniRef50_A3HW42 Putative uncharacterized protein n=1 Tax=Algoriphagus sp. PR1 RepID=A3HW42_9SPHI Length = 217 Score = 75.8 bits (185), Expect = 2e-12, Method: Composition-based stats. Identities = 36/223 (16%), Positives = 78/223 (34%), Gaps = 24/223 (10%) Query: 1 MKQLWFAMSLVTG-SLLFSANASATPASGALLQQMNLASQSL-----NYELSFISINK-Q 53 MK++ ++V + A A P + +L M+ QS+ +++ ++ I Sbjct: 1 MKKIALVFTIVFAAFITLDAAAQKDPKAKEVLDGMSQKYQSMKGFTASFDYTYSDIAGTG 60 Query: 54 GVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYF--EPGLEPFTLN--GDYIVD 109 +S A N+ +L P +E+ G + F + T+N + Sbjct: 61 DRQSGEI--AVKGNQYRLKL-----PDQEIFNDGKTVWTFIETSTYKEVTINDVSQMEGE 113 Query: 110 SLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVA-RDGTRYS-YIVWMDTESKLP 167 PS IY ++ YD+ + + V+ + A + + + +D +K Sbjct: 114 LTPSNIYKMYE---KGYDYKLLADKSYQGKTANVVELEAEKSNAPFQKVKLMIDKNTKDL 170 Query: 168 MRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLL 210 + ++ D G T + + +I S + Sbjct: 171 LGWEMFDDQGGTF-AYAFKNLKADPNIPDSHFVFDTKKHAGVE 212 >UniRef50_Q9F2X7 Putative membrane protein n=11 Tax=Streptomyces RepID=Q9F2X7_STRCO Length = 420 Score = 71.5 bits (174), Expect = 3e-11, Method: Composition-based stats. Identities = 23/185 (12%), Positives = 51/185 (27%), Gaps = 22/185 (11%) Query: 53 QGVESLRYRHARLDNRPLAQLLQM-DGPRREVVQRGNEISYFEPGLEPF----------T 101 G +LR D +L + + ++ G ++ ++ Sbjct: 128 SGSHTLRV---AADGPDRQKLSLLENAAEYSLIHNGKDVWGYDSRSNEVYHSTAADGAER 184 Query: 102 LNGDYIVDSLPS----LIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVAR-DGTRYS- 155 D +P+ K + G ++A R + V + DG+ Sbjct: 185 PEKDVPGQDVPATPKDFADQALKAVDDTTSVTVGGTAQVAGRDAYRLVVEPKQDGSTVGA 244 Query: 156 YIVWMDTESKLPMRVDLL-DRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPV 214 V +D E+ P++ L G + + +S + Sbjct: 245 ITVAVDAETGTPLKFTLTPASGGAAVVDVGFTKVSF-AKPDASTFDFTPPEGAKVTEADE 303 Query: 215 GEKAK 219 ++A Sbjct: 304 ADEAG 308 >UniRef50_A6UT98 Putative uncharacterized protein n=1 Tax=Methanococcus aeolicus Nankai-3 RepID=A6UT98_META3 Length = 334 Score = 70.8 bits (172), Expect = 6e-11, Method: Composition-based stats. Identities = 47/340 (13%), Positives = 119/340 (35%), Gaps = 53/340 (15%) Query: 7 AMSLVTGSLLFSANASATPASGALLQQMNL---ASQSLNYELSFISINKQGVESLRYRHA 63 ++L+ G ++ + Q+M + ++ + E + Y + Sbjct: 13 VVALIFGICFAGCIGEQQMSADQISQKMQEKYDSINDMSCNMVMTVDVNGKPEKIEYTYK 72 Query: 64 RLDNRPL-----AQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTD 118 L+ DG +++ + Sbjct: 73 YKKPNKSFIENDEFLMASDGK-----------TFYMYDKNKNEYMTMDAPKQQNNNYGEM 121 Query: 119 FKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRY------SYIVWMDTESKLPMRVDL 172 K + Y+ VG +I++ C ++++ ++ T + +W+D E P++++ Sbjct: 122 IKSILEMYNPEYVGEEKISNGDCYILKLTTKNKTGTIASSTGNMKIWVDKEYWQPIKIEF 181 Query: 173 LDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVG-----EKAKFSWTPTWL 227 +G T+E ++ + +N + S+ T+ L++ + E+A+ + T L Sbjct: 182 ---NGGTIE-YQNVKYNTG--LDDSIFTITPPKGAKLMNNNIPKKMTIEEAQKQVSFTIL 235 Query: 228 PQGFS-EVSSSRRPLPTMDNMPIESRLYSDGLFSFSVNVN----RATPSSTDQML----- 277 ++ + + + N I S Y+ G+ F V + ++++++ Sbjct: 236 IPKYTGDYEFNNAMVAGNGNNQIISITYTKGINGF-VIMEDNSKPIDLPNSEKVMIGDIE 294 Query: 278 -----RTGRRTVSTSVRDNAEITIVGELPPQTAKRIAENI 312 G + T +D I I G L + +IA+++ Sbjct: 295 AQYIKNMGA-NMLTFNKDGVNIVISGTLDKEELIKIAKSM 333 >UniRef50_Q8TQL2 Putative uncharacterized protein n=1 Tax=Methanosarcina acetivorans RepID=Q8TQL2_METAC Length = 220 Score = 70.4 bits (171), Expect = 8e-11, Method: Composition-based stats. Identities = 18/143 (12%), Positives = 42/143 (29%), Gaps = 8/143 (5%) Query: 77 DGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDF-KRLSPYYDFISVGRTR 135 G ++ G + P +L Y F + YD G Sbjct: 73 TGNETVMIYYGKMEWLYGPETNVVQKIMVPEEYQESNLDYFKFFNYVFNEYDVSVPGSDT 132 Query: 136 IADRLCEVIRVVAR-----DGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNV 190 + R ++ + D +W+D E+ +P++ ++ + + + Sbjct: 133 VDGRTAYLLETKPKEGKDEDNLLDGIRIWVDEETWIPLKYEIYLGPQRM--EIEIRNLKI 190 Query: 191 NQDISSSMQTLAKANLPPLLSVP 213 N I S ++++ Sbjct: 191 NTGIQDSEFVFDVPEGAEVVAMN 213 >UniRef50_Q08UT2 ABC efflux pump, inner membrane subunit, putative n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q08UT2_STIAU Length = 667 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 20/140 (14%), Positives = 52/140 (37%), Gaps = 6/140 (4%) Query: 73 LLQMDGPRREVVQRGNEISYFEPG-LEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISV 131 L + +++ + + + +PG +P +++ + + + + YD + Sbjct: 498 LTPVSSKGEQILIQARSMWFMKPGLRKPVSISPRQRLSGQAANGDIASAQFADNYDPTLL 557 Query: 132 GRTRIADRLCEVIRVVA--RDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFN 189 G + R +R++A +D T I ++D E+ L ++ + L G F+ Sbjct: 558 GEDTVDGRAVHKVRLMAKRKDVTYDQVIFYLDKENHLALKAEYLTTSGTP---FKYSLMK 614 Query: 190 VNQDISSSMQTLAKANLPPL 209 + + L + Sbjct: 615 YGNKTPGPNPSPFISELKIV 634 >UniRef50_D2SA91 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Geodermatophilus obscurus DSM 43160 RepID=D2SA91_9ACTO Length = 354 Score = 68.5 bits (166), Expect = 3e-10, Method: Composition-based stats. Identities = 33/245 (13%), Positives = 73/245 (29%), Gaps = 31/245 (12%) Query: 4 LWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQ---------- 53 L A+ + +++ + A A L+ + L S+ + + + Sbjct: 3 LLVAVLVALPTVVAALPADDADVPAAELRAVVLTSEDVGFSG-YAVSAGGLALPVSERLT 61 Query: 54 -------GVESLRYRHARLDNRPLAQLLQMDGPRRE-VVQRGNEISYFE------PGLEP 99 +R ++ + G V + ++ P Sbjct: 62 DVADLFSDRTLMRVWWR---GPEEHRVDVVSGAGETGVHRDPGGTWTWDFEAGTATRGTP 118 Query: 100 FTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARD--GTRYSYI 157 +L D LP+ + + + G R+A R +R+V D + Sbjct: 119 ASLALPTPPDLLPAALGRRLLSEAADEELSRAGARRVAGRDALGLRLVPADVASSVGRVD 178 Query: 158 VWMDTESKLPMRVDLLDRD-GETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGE 216 VW+D S LP++V++ G R + ++ + + L + E Sbjct: 179 VWVDPASGLPLQVEVFAEGAGLPALDTRFLDLDLAVPPADVVAFTPPPEATLLTAPDTEE 238 Query: 217 KAKFS 221 + Sbjct: 239 LIAQA 243 >UniRef50_C4DC81 Putative uncharacterized protein n=1 Tax=Stackebrandtia nassauensis DSM 44728 RepID=C4DC81_9ACTO Length = 367 Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 34/251 (13%), Positives = 71/251 (28%), Gaps = 48/251 (19%) Query: 6 FAMSLVTGSLLFSANASA------------TPASGALLQQMNLA---------SQSLNY- 43 FA+ + + + +A A ++ LL+ + + Q+ N Sbjct: 10 FAVPIALAAGIVTAAAGTGIVSASGASDLPDRSAAQLLEDVQNSDIEGLSGTVVQNANLG 69 Query: 44 ------ELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGL 97 ++ G +R +A D A L D + ++ G ++ + Sbjct: 70 LPSLGQSGGGLTQLADGSNQMRVWYAAPDKMRTAVLS--DYGESDTIRNGEDVWTWNSEG 127 Query: 98 EP---FTLNGDYIVDSL--PSLIY---------TDFKRLSPYYDFISVGRTRIADRLCEV 143 +TL L PS + K + P + +A R Sbjct: 128 GEATHYTLPKKAADAPLWPPSEMGGADPAKAAEQALKAIEPTTKVSTSQPVEVAGRDAYE 187 Query: 144 IRVVARDG--TRYSYIVWMDTESKLPMRVDLL-DRDGETLEQFRVIAFNVNQDISSSMQT 200 + + +DG + +D E +P+R + D + E + T Sbjct: 188 LVLEPKDGESLVDRVTLAIDAEHGVPLRTQVYSDDEKEAAFDIGFSRVDFG-TPDKENFT 246 Query: 201 LAKANLPPLLS 211 + Sbjct: 247 FTAPKGVTVTE 257 >UniRef50_C0GKP3 Putative uncharacterized protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GKP3_9FIRM Length = 217 Score = 68.1 bits (165), Expect = 4e-10, Method: Composition-based stats. Identities = 30/223 (13%), Positives = 72/223 (32%), Gaps = 26/223 (11%) Query: 3 QLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLN---YELSFISIN---KQGVE 56 ++ + V +L+F A + P L + ++ + + + + +E Sbjct: 2 KIKLPVLTVILALIFLAAGCSQPPEEGTLDYVLENVRNNSIDTFTGVMEISSEMDGKTME 61 Query: 57 SLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFT--LNGDYIVDSLPSL 114 ++ Y R + + + ++ + G + + + D Sbjct: 62 TITYI-WYAGGRSRTESVDEEQHKQITIFDGTDSWIISDYDLSYVTVIREPSGFDMF--- 117 Query: 115 IYTDFKRLSPYYDFISVGRTRIADRLCEVIR-VVARDGTRYSYIVWMDTESKLPM----R 169 DF Y+ G + R + V+ +DG + W+D E+ LP R Sbjct: 118 ---DFTNFGEPYELSYRGTETVEGRRAHGVEGVLEKDGFKEEVTWWVDAETWLPFISENR 174 Query: 170 VDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSV 212 DL G+ + +N+++ S+ + + Sbjct: 175 TDLYT--GKLI----FRDIRINKEVDESLLEYTPPEDVYVHEI 211 >UniRef50_B5GWG6 Putative uncharacterized protein n=2 Tax=Streptomyces RepID=B5GWG6_STRCL Length = 471 Score = 67.7 bits (164), Expect = 5e-10, Method: Composition-based stats. Identities = 27/199 (13%), Positives = 52/199 (26%), Gaps = 30/199 (15%) Query: 47 FISINKQGVESLRYRHARLDNRPLAQLLQMD-GPRREVVQRGNEISYFEPGLEPFTLNGD 105 + G +LR +D +L +D V+ G E+ + D Sbjct: 116 LTELASGGSHTLRI---AIDGPERQKLSVLDETSEYSVIHNGGELWAYNSESNEVYHEKD 172 Query: 106 -------------YIVDSLPSLIYTDFKRLSP---------YYDFISVGRTRIADRLCEV 143 P + T + L+ G +IA R Sbjct: 173 LTGGKGHGGGAPGGKGAKGPDRLPTTPQELARTVLDAARGASTSVEVDGTAQIAGRDAYQ 232 Query: 144 IRVVARDGTRY--SYIVWMDTESKLPMRVDLLDRD-GETLEQFRVIAFNVNQDISSSMQT 200 + + S + +D + P+R + D G+ N + +M Sbjct: 233 LAIKPEQSGSTIGSIKIAVDERTGTPLRFTVNPSDGGKAAIDIGFTKVNF-AKPAPAMFD 291 Query: 201 LAKANLPPLLSVPVGEKAK 219 L+ ++A Sbjct: 292 FTPPKGAKLVEGDTADRAG 310 >UniRef50_A1ZTN2 Putative uncharacterized protein n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZTN2_9SPHI Length = 254 Score = 66.9 bits (162), Expect = 1e-09, Method: Composition-based stats. Identities = 36/249 (14%), Positives = 87/249 (34%), Gaps = 21/249 (8%) Query: 7 AMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISI--NKQGVESLRYRHAR 64 ++ G LL +AN + ++++ + Q + + I + ++ + Sbjct: 9 LRWILIGLLLATANFIQAQNATEIVKKADSHMQGKSSQGIMIMTIVRPKWRRTVEMKSWS 68 Query: 65 LDNRPLAQLLQMDGPRRE----VVQRGNEISYFEPG-LEPFTLNGDYIVDSLPSLIYTDF 119 L+ + P R+ ++RG E+ + P + + S +T+ Sbjct: 69 KGKGF--SLILIKKPVRDKGSGYLKRGKEMWNWLPKVGRVVKMPPSMMNQSWMGSDFTND 126 Query: 120 KRLSPY-----YDFISVGRTRIADRLCEVIRVVARDGTRYSY---IVWMDTESKLPMRVD 171 + Y +G + R C + + + + +W+ + L ++ Sbjct: 127 DLVRQSSIVVDYTHKILGSETLEGRDCYKVLLTPKPNAPVVWGKVEMWISKKDYLQLQSK 186 Query: 172 LLDRDGETLEQFRVIAF-NVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQG 230 + D DG + R N+ + S + A+ P +V ++ F+ + G Sbjct: 187 MYDEDGYLVNTMRGSKIKNLGGRVLPSYMEMIPADKPNQKTVLEYKQMVFN---KPISDG 243 Query: 231 FSEVSSSRR 239 F V + +R Sbjct: 244 FFSVQNMKR 252 >UniRef50_Q1IY36 Outer membrane lipoprotein-sorting protein, LolA family n=3 Tax=Deinococcus RepID=Q1IY36_DEIGD Length = 239 Score = 66.5 bits (161), Expect = 1e-09, Method: Composition-based stats. Identities = 33/202 (16%), Positives = 62/202 (30%), Gaps = 14/202 (6%) Query: 6 FAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNY--ELSFISINKQGVESLRYRHA 63 L +L SA A + A++ +++ + S + L + Sbjct: 24 LFPLLALTALASSAGAQTAQDILNRVDAAQKAAKDVSFRLQGSATLESSPQKIDLTIKAI 83 Query: 64 RLDNRPLAQLLQM---DGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 A+L + VV NE+ + T+ DF Sbjct: 84 PAQGV--ARLQFLAPDSLADNIVVADRNEVRQYLFLTNQITVTPTKKAADQAGFGGLDFT 141 Query: 121 RLSPY------YDFISVGRTRIADRLCEVIRVVARDGTRY-SYIVWMDTESKLPMRVDLL 173 +LS Y+ +G + +A + + ++ VW+ P RV LL Sbjct: 142 QLSNAATLLSQYNVKLLGTSTVAGQKIYQLEATPKNAASNDRARVWITEAGWRPTRVQLL 201 Query: 174 DRDGETLEQFRVIAFNVNQDIS 195 + L V + VN ++ Sbjct: 202 GDGNKVLADLSVSNYRVNSGLT 223 >UniRef50_D2Q368 Putative uncharacterized protein n=1 Tax=Kribbella flavida DSM 17836 RepID=D2Q368_9ACTO Length = 372 Score = 66.1 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 29/182 (15%), Positives = 57/182 (31%), Gaps = 21/182 (11%) Query: 56 ESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLE---PFTLNGDYIVDSLP 112 + R A D +A L +M R G ++ TL + P Sbjct: 89 HTARVAFAGPDKARVAVLDEM--AERVWTTDGKTAWAYDSAEREAVKVTLPARPATPARP 146 Query: 113 SLIYTD------------FKRLSPYYDFISVGRTRIADRLCEVIRVVARDG--TRYSYIV 158 + ++ P G +A R +R+V R G T S + Sbjct: 147 KVAPEHEAYDPQAVAKKFLAQIDPTTKVEVTGTESVAGRDAYKLRLVPRTGKTTVGSVTL 206 Query: 159 WMDTESKLPMRVDLLDRDGE-TLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEK 217 +D+++ +P+ V +L R G+ Q + + + ++S + + Sbjct: 207 AIDSKTWVPLEVTVLPRTGKDPAVQLGFSSVSFDV-PAASTFAFTPPKGVAVTEKKLPAI 265 Query: 218 AK 219 Sbjct: 266 TP 267 >UniRef50_B6WQE2 Putative uncharacterized protein n=1 Tax=Desulfovibrio piger ATCC 29098 RepID=B6WQE2_9DELT Length = 269 Score = 64.2 bits (155), Expect = 6e-09, Method: Composition-based stats. Identities = 33/214 (15%), Positives = 68/214 (31%), Gaps = 34/214 (15%) Query: 5 WFAMSLVTGSLLFSANASATPASG-----ALLQQMNLASQSL-NY-ELSFISINKQGVES 57 FA+ T L SA A+ L +M+ S +Y E V + Sbjct: 8 LFALFFCTLLLAGSAQAAPAITDPVKAGYDLAVRMDQVDTSQDSYSEAVMSINRGGKVLT 67 Query: 58 LRYR----HARLDNRPLAQLLQMD------GPRREV-----VQRGNEISYFEPGLEPFTL 102 ++ H D + L+ D G + V +++ +++ + P Sbjct: 68 RSFKTYSKHFGKDGKDEYSLIVFDRPADVNGTKYLVWSYRGLEQDDDMWVYLPAESLVR- 126 Query: 103 NGDYIVDSLPSLIYTDFKRLS-------PYYDFISVGRTRIADRLCEVIRVVARDGTRYS 155 S + +D YD++ G + C ++ + G Sbjct: 127 -RISGSSKFASFMRSDLSNEDIQNLDDVDEYDYLLQGEENVDGIDCYILERTPKKGKETQ 185 Query: 156 Y---IVWMDTESKLPMRVDLLDRDGETLEQFRVI 186 Y + W+ ++ L +R D D+ +++ Sbjct: 186 YSRQVQWVRKDTLLRLRADYYDKKDRLVKKLFFS 219 >UniRef50_B1A1F2 Outer membrane lipoprotein-sorting protein (Fragment) n=1 Tax=Flammeovirga yaeyamensis RepID=B1A1F2_9SPHI Length = 192 Score = 63.4 bits (153), Expect = 1e-08, Method: Composition-based stats. Identities = 30/202 (14%), Positives = 72/202 (35%), Gaps = 32/202 (15%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISI-----NKQGV 55 MK+++ L L + A + +L++++ Y + +S + Sbjct: 1 MKKIF---ILCAFFLSIGSQAQ---DANKILKEIDQNM----YTKTKVSTTKMIVYGKRK 50 Query: 56 ESLRYRHARLDNRPLAQLLQMDGPRRE----VVQRGNEISYFEPGLEPFTLNGDYIVDSL 111 + + P RE +++ +++ + P + +++ Sbjct: 51 TKEIITKGFTRGTEDSFSEYLS-PAREKGTKMLKLDDKLWIYSPSSDRTIQISGHMLRQ- 108 Query: 112 PSLIYTDFK--------RLSPYYDFISVGRTRIADRLCEVIRVVAR--DGTRYSYIVWMD 161 S+ +D +L Y VG + C ++ + A+ D T +W++ Sbjct: 109 -SVNGSDMSYEDMMQERKLVEMYAPTIVGEEEMNGEECYILELDAKTEDVTYQKIKMWVE 167 Query: 162 TESKLPMRVDLLDRDGETLEQF 183 + +PMR DL + G+ L+ Sbjct: 168 KKHSVPMRQDLFAKSGQMLKTI 189 >UniRef50_B8D1B5 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Halothermothrix orenii H 168 RepID=B8D1B5_HALOH Length = 248 Score = 62.7 bits (151), Expect = 2e-08, Method: Composition-based stats. Identities = 34/189 (17%), Positives = 75/189 (39%), Gaps = 20/189 (10%) Query: 7 AMSLVTGSLLFSANASATPASGALLQQM--NLASQSLNYELSFISINKQGVESLRYRHAR 64 + ++T +++FS+ + A ++ + N +S E I I + Sbjct: 9 LLLIMTMTVVFSSLSIA-ITPEEIINRRDDNEYVRSAKIESEMIIIKGNRKIIKTMV-SI 66 Query: 65 LDNRP--LAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDF--- 119 D + + + +D + ++R + + F P E ++++ ++ +D Sbjct: 67 TDGKNALVEFINPLD-RGTKFLKRDDNLFMFFPDAEDIVKISGHMLEQ--GIMGSDLSYK 123 Query: 120 -----KRLSPYYDFISVGRTRIADRLCEVIRVVARDGTR---YSYIVWMDTESKLPMRVD 171 +L+ YDF + R C V+ +AR+G Y + W+D E + ++ + Sbjct: 124 DIMESDKLTELYDFKILREEEYQGRPCYVMEGIAREGAEVSYYRRVAWIDKERFIGLKEE 183 Query: 172 LLDRDGETL 180 L R G L Sbjct: 184 LYARSGRLL 192 >UniRef50_D2BF00 Outer membrane lipoprotein-sorting protein-like protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BF00_STRRD Length = 381 Score = 62.3 bits (150), Expect = 2e-08, Method: Composition-based stats. Identities = 35/276 (12%), Positives = 76/276 (27%), Gaps = 48/276 (17%) Query: 54 GVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPG-LEPFTLNGDYIVDS-- 110 G L+ + D A +M +++ G++ +E + + G Sbjct: 97 GSHELKVWYGGEDRFRFALPGRMS--ETDLIVNGDQAWLWESATNKATRIKGAGQAGPEH 154 Query: 111 ---LPS------LIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDG--TRYSYIVW 159 LP+ + KR ++A R + + RDG + Sbjct: 155 DRALPAATTPQQVADEMLKRADAATAVSVSNTEKVAGRSAYQLVLTPRDGSSLVKEVKLA 214 Query: 160 MDTESKLPMRVDLLDRD-GETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKA 218 +D E+ +P+RV + + E + + + T + Sbjct: 215 LDGETFVPLRVQVYAKSAAEPAFEVGFTSVTFTP-PAPDNFTFTPPAGAKVEEKS----- 268 Query: 219 KFSWTPTWLPQGFSEVSSSRRPLPTMDNM---PIESRLYSDGLFSFSVNVNRATPSSTDQ 275 RRP + E +G + +V + Sbjct: 269 --------------LADLGRRPEAGQERAEALKGEITTVGEGWTTVAVL--PFSAQDLAG 312 Query: 276 MLRTGRRTVSTSVRDNAEITIVGELPPQTAKRIAEN 311 + G + T V + ++AK+++ Sbjct: 313 PAQQGG------RSGGQDTTAVADALLKSAKQVSGA 342 >UniRef50_UPI0001C421AF hypothetical protein BpOF4_12330 n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C421AF Length = 344 Score = 61.9 bits (149), Expect = 3e-08, Method: Composition-based stats. Identities = 40/287 (13%), Positives = 97/287 (33%), Gaps = 31/287 (10%) Query: 1 MKQLWFAMSLVTGSLLFSANASAT-PASGALLQQMNLASQS-LNYELSFISINKQGVESL 58 MK + + ++ L+ + + ++ M A+Q+ ++Y + + Sbjct: 1 MKNVAIGV--MSILLIIVSGCQMRGLSGNEVMASMLEANQTAISYYMETDYQ-GNDGDPF 57 Query: 59 RYRHARLDNRPLAQLLQMDGPRREVVQ----RGNEISYFEPGLEPFTLNGDYIVDSLPSL 114 + R+ + + +G + V G+ + +E + T + L Sbjct: 58 TMKEWRMADGKF-RTEMYEGEKLVYVSLYSDIGHVLLDYE-EEQLITYDSPETASYLTQT 115 Query: 115 IYTD----FKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRV 170 + + +YD ++ DR ++ + ++ +W+D E+ + ++ Sbjct: 116 PRESMMQMLEAMHDHYDIKMKEEAKLLDREVFILELSSKQSDNDEMELWIDKENWVLLKT 175 Query: 171 D-LLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVP--------VGEKAKFS 221 + + D + T E ++N + S+ + +S+ E+AK Sbjct: 176 NFVFDEEWMTSEAAAF---DINPKMEESLFIIDDTIDFEPVSLNDLVTNEVIDLEEAKEK 232 Query: 222 WTPTWLPQGFSEVSSSRRPLPTMDNMPIESRLYSD--G--LFSFSVN 264 L P ++ + YSD G LFS+ V Sbjct: 233 ADFDILIPSEEYHFHEATTYPRPEDEMGVTLTYSDAEGRHLFSYEVF 279 >UniRef50_A1R6D5 Putative uncharacterized protein n=1 Tax=Arthrobacter aurescens TC1 RepID=A1R6D5_ARTAT Length = 380 Score = 61.5 bits (148), Expect = 4e-08, Method: Composition-based stats. Identities = 32/263 (12%), Positives = 77/263 (29%), Gaps = 49/263 (18%) Query: 4 LWFAMSLVTGSLLFSANASATPA-----SGALLQQMNLASQSLNYELSF----------I 48 L+ ++L L S A AT + + +L M ++ + + Sbjct: 15 LFIPLALAMAVLFGSVQAGATVSLPLKTAEEILA-MVARTEVRALSGTVEQTAELGLPEV 73 Query: 49 SINKQGVES-----------LRYRHARLDNRPLAQLLQMDG-PRREVVQRGNEISYFEP- 95 + G+ S +D A++ +D R+VV G + ++ Sbjct: 74 PASGPGITSGAASALEFLTGSHTARVYVDGPLRARVQILDQMAERDVVVNGGDAWFYNSR 133 Query: 96 ---------------GLEPFTLNGDYIVDSLPSLIYTDF-KRLSPYYDFISVGRTRIADR 139 L+ P + + F + + + +A R Sbjct: 134 DNSATHLTVPVPSLAELKSLPAKPTRPDMPTPEAMASRFIAAIDASTEVTVAEASSVAGR 193 Query: 140 LCEVIRVVAR--DGTRYSYIVWMDTESKLPMRVDL-LDRDGETLEQFRVIAFNVNQDISS 196 + + R + S + +D+E+ LP+ V++ E +++ + Sbjct: 194 SAYSLTLNPRSTETLVDSVTIDVDSETGLPLGVEVRAKGQSEPAYSLEYTQLDLS-TPDA 252 Query: 197 SMQTLAKANLPPLLSVPVGEKAK 219 ++ + + K Sbjct: 253 ALFDFTPPPGATVTEKVLPANEK 275 >UniRef50_C6Q2P6 Putative uncharacterized protein n=1 Tax=Clostridium carboxidivorans P7 RepID=C6Q2P6_9CLOT Length = 370 Score = 61.1 bits (147), Expect = 5e-08, Method: Composition-based stats. Identities = 27/241 (11%), Positives = 63/241 (26%), Gaps = 22/241 (9%) Query: 1 MKQ---LWFAMSLVTGSLLFSANA--SATPASGALLQQMNLAS-QSLNYELSF---ISIN 51 MK+ F +L+T SL + T G ++ + A + +Y I N Sbjct: 1 MKKRILAIFTATLITASLFQGCGSLKKDTIIPGEVINKAMSAYEKPKSYYGEAKLEIYEN 60 Query: 52 KQGVESLRYRHARLD-----NRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNG-- 104 + E + + R + G + Y + ++ Sbjct: 61 GKLSEKADMKEWADNSSNKMRRRYELNSSISGKNISTNDGNKVLVYMVKDKKAMSMKAGN 120 Query: 105 --DYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRY--SYIVWM 160 + S + +S +D G + + + W+ Sbjct: 121 NLSDSNNDYKSQLMKQLSSISKTHDLTYKGEESVNGFKTYHLYAKPKQKNSILGDMNYWI 180 Query: 161 DTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKF 220 D S ++ + + +S+ T + + + + K Sbjct: 181 DEGSWFVIKC--TSESSNMKTDTEYTKIKFSPKLDNSLFTQNIPSDVKIEDIDNNSELKE 238 Query: 221 S 221 + Sbjct: 239 N 239 >UniRef50_C7NRI7 Putative uncharacterized protein n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NRI7_HALUD Length = 389 Score = 60.7 bits (146), Expect = 6e-08, Method: Composition-based stats. Identities = 39/308 (12%), Positives = 82/308 (26%), Gaps = 48/308 (15%) Query: 44 ELSFISINKQGV-------ESLRYRHARLDNRPLAQLLQMDGPRREVV-QRGNEISYFEP 95 S + N ++R H + + + E Sbjct: 88 RGSLVVANDSVTWRYDRAANTVRVTHRID--GEQQSNTSISSSMGSIFGRVNTASDGTER 145 Query: 96 GLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVA-RDGTRY 154 L P + + G +A R V+ V D Sbjct: 146 EAALDPLILPAAGGGDPQPFAGQIESFANA-SLNYHGTGTVAGREAYVVEAVPEADVNTA 204 Query: 155 SYIVWMDTESKLPMR---VDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLS 211 + +W+D E P++ ++D + T+ N +S+ M T ++ Sbjct: 205 NITLWIDQEWYYPLQWNSTIVVDEERRTVTTV-YRNVTFNPAVSAGMFTFDPPANATIVE 263 Query: 212 VPVGEKA---------KFSWTPTWL--PQGFSEVSSSRRPLPTMDNMPIESRLYSDGLFS 260 V + + T P+ ++ + S Y++G + Sbjct: 264 RRVVSQTFETRAELVARSEMTIPDPDVPE---PLTFDSARYFDDNGTVRTSLQYTNGSAT 320 Query: 261 FSVN----------------VNRATPSSTDQMLRTGRRTVSTSVRDNAEITIVGELPPQT 304 V V + Q +G V + + T+ G++ +T Sbjct: 321 LRVTKSEPRGDSAALPGDDRVEINGHEAAIQSFDSGISLVWS--CEGHRYTVFGDVSVET 378 Query: 305 AKRIAENI 312 + + E+I Sbjct: 379 VRAVGESI 386 >UniRef50_Q1PYN9 Putative uncharacterized protein n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PYN9_9BACT Length = 233 Score = 60.0 bits (144), Expect = 1e-07, Method: Composition-based stats. Identities = 20/146 (13%), Positives = 47/146 (32%), Gaps = 12/146 (8%) Query: 77 DGPRREV-VQRGNEISYFEPGLEPF---TLNGDYIVDS----LPSLIYTDFKRLSPYYDF 128 D PR EV + G + + P + +N Y Sbjct: 87 DPPRDEVNIIDGKHLWIYHPKAKQVEKYAVNKGEHTAQNIHFFGFGYGESVASAKKDYTI 146 Query: 129 ISVGRTRIADRLC-EVIRVVAR-DGTRYS-YIVWMDTESKLPMRVDLLDRDGETLEQFRV 185 A + C + + + ++Y+ +W++ LP++++L + GE + Sbjct: 147 SLADTME-AGKKCFYALDLTPKSTSSQYAKIRLWIEEGVWLPVKIELHESGGEVVNLIEF 205 Query: 186 IAFNVNQDISSSMQTLAKANLPPLLS 211 + +N +S + ++ Sbjct: 206 ESITLNSRMSDKLFMFDPPKGVEIIE 231 >UniRef50_A0PYF7 Conserved protein, putative n=2 Tax=Clostridium RepID=A0PYF7_CLONN Length = 371 Score = 59.6 bits (143), Expect = 1e-07, Method: Composition-based stats. Identities = 21/191 (10%), Positives = 63/191 (32%), Gaps = 24/191 (12%) Query: 48 ISINKQGVESLRYRHARLDNRPLAQLLQ------------MDGPRREVVQRGNEISYFEP 95 N + V ++ + L + + + M ++++ R N++ Sbjct: 57 TYENGKKVSTVNLKEWSLPGNKVRREVTSDLGDGKFDKAIMTCDGKKMILRNNDVYM--- 113 Query: 96 GLEPFTLNGDYIVDSLPSLIYTD-FKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRY 154 + ++++ P D ++ + G + +R + +D + Sbjct: 114 -QSTNIIKENWVMSKSPKKFAMDEMANITKTHTIEIKGEEVVNNRNTYHLYAKPKDINKK 172 Query: 155 SYI-----VWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPL 209 W+D ++ ++ D + + + ++ + F +I +SM T + Sbjct: 173 GISAGKIDYWIDKDNWFIVKCDSKNENIRVVSEYLNVNFK--PNIDNSMFTQKIPKGVKV 230 Query: 210 LSVPVGEKAKF 220 ++ E K Sbjct: 231 ENLDKKEVNKS 241 >UniRef50_B0LFU6 Outer membrane lipoprotein-sorting protein n=1 Tax=uncultured bacterium pEAF66 RepID=B0LFU6_9BACT Length = 271 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 33/208 (15%), Positives = 61/208 (29%), Gaps = 40/208 (19%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNL--------ASQSLNYELSFISINK 52 +K++ A L+ SA + ++ +L+++ A L + + Sbjct: 3 VKRIVAAALLMLS----SAAGATALSADQILEKVRNRADGADILAEAQL-----VLKESN 53 Query: 53 QGVESLRYRHARLDNRPLAQLL-QMDGPRR------------EVVQRGNEISYFEPGLEP 99 G + D +L GP E + ++ + P Sbjct: 54 GGSRTRTLLFLEKDYGKDEKLTLAFTGPADVKGVVLQSVNYDEAAAKEDDQWMYLPAFRQ 113 Query: 100 FT-LNGDYIVDSL--PSLIYTDFKRLSPY-YDFISVGRTRIADRLCEVIRVVARDG---T 152 + S Y D +L Y VG I + C +I Sbjct: 114 VRRIAATDKRGSFMGSQFSYIDLDKLRVGDYRQKLVGEETIDGKPCYMIERTPASESVIN 173 Query: 153 RYSYI---VWMDTESKLPMRVDLLDRDG 177 R Y VW+D E+ + ++ D G Sbjct: 174 RTGYHKNMVWVDKETFVILKQSYFDARG 201 >UniRef50_Q0R4F9 Outer membrane lipoprotein-sorting protein-like protein n=3 Tax=Pseudomonas RepID=Q0R4F9_PSEFL Length = 278 Score = 59.2 bits (142), Expect = 2e-07, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 44/131 (33%), Gaps = 10/131 (7%) Query: 80 RREVVQRGNEISYFEP-GLEPFTLNGDYIVDSL--PSLIYTDFKRLS-PYYDFISVGRTR 135 E + + + P + ++ S Y D ++ Y +G + Sbjct: 97 PHETLGLEDSQWMYLPVSRQTRRISTTDKRGSFMGSEYSYADLDKIRVKDYSQTLLGEEQ 156 Query: 136 IADRLCEVIRVVARDG---TRYSY---IVWMDTESKLPMRVDLLDRDGETLEQFRVIAFN 189 I R C VI + Y VW+D ++ L MR D D G ++Q R Sbjct: 157 IKGRDCYVIEREPASPEVLAKTGYNKLKVWIDKQNFLVMRQDFFDVKGVLIKQMRTQKVE 216 Query: 190 VNQDISSSMQT 200 I S + + Sbjct: 217 TIDGIDSIVLS 227 >UniRef50_UPI0001693F8A sporulation protein YdcC n=1 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693F8A Length = 418 Score = 58.8 bits (141), Expect = 3e-07, Method: Composition-based stats. Identities = 24/215 (11%), Positives = 72/215 (33%), Gaps = 20/215 (9%) Query: 1 MKQLWFAMSLVTGSLLFSANAS--ATPASGALLQQMNLASQSLNYELS--FISINKQGVE 56 M+++ + +++V G A + L M S+ +Y+ + + + + Sbjct: 1 MRRVTWILAIVIGLAAVLAGCGSKDAGSVVKDLNNMT--SKLESYKGTGKMVLNTGEHPQ 58 Query: 57 SLRYRHARLDNRPLAQLLQMDGP----RREVVQRGNEISYFEPG-LEPFTLNGDYIVDSL 111 + N ++ + ++ V++ + + P + F D+ + Sbjct: 59 EYQV-EVWYQNPHFYRI-SLTNENKDIKQIVLRNDDGVFVLTPHLNKSFRFQSDWPDNQG 116 Query: 112 PSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVAR---DGTRYSYIVWMDTESKLPM 168 ++ + R + + V V A+ +G +W+D ++ P Sbjct: 117 QVYLFQTLAQSI----VNDNERQFVDEDSAYVFDVTAKYQNNGNLKRQKIWLDKKNLAPK 172 Query: 169 RVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAK 203 V++ D + + + + F + + + Sbjct: 173 HVEVSDENSKVIVKLDFTQFEFGSKFDKNAFDMQR 207 >UniRef50_A0JRW6 Putative uncharacterized protein n=1 Tax=Arthrobacter sp. FB24 RepID=A0JRW6_ARTS2 Length = 384 Score = 58.4 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 25/191 (13%), Positives = 55/191 (28%), Gaps = 27/191 (14%) Query: 56 ESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFT-------------- 101 + R N + L ++ R V+ G+++ + T Sbjct: 92 HTARVFMDGPSNVRVQVLDRL--AERNAVRSGDQVWLYSSKDNTATHLTLPTDAGKHNDF 149 Query: 102 LNGDYIVDSLPSLIYTDFKRL-------SPYYDFISVGRTRIADRLCEVIRVVARDGTRY 154 + ++ T P + + +A R + + R Sbjct: 150 SQFKHPGSGTDGVMPTPEDLAARLLAAADPTTEIAVLPEVTVAGRAAYNLMITPRTEGTL 209 Query: 155 --SYIVWMDTESKLPMRVDLLDRDG-ETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLS 211 S + +D +S LP+ V+L R E + ++ +S+ + + Sbjct: 210 IGSIAIAVDGQSGLPLSVELKARGQEEPAFKLAFTTLSLQA-PDASLFAFSPPPGATVKE 268 Query: 212 VPVGEKAKFSW 222 + V SW Sbjct: 269 IEVPAHGTESW 279 >UniRef50_B8KU32 Putative uncharacterized protein n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KU32_9GAMM Length = 232 Score = 58.4 bits (140), Expect = 3e-07, Method: Composition-based stats. Identities = 25/214 (11%), Positives = 56/214 (26%), Gaps = 22/214 (10%) Query: 6 FAMSLVTGSLLFSANASATPASGALLQQMNLASQSLN-YELSFIS----------INKQG 54 F + + A+A + L + + + +E Sbjct: 7 FFALALLATCTVQAHAEDPTITWELKDAIRQIDRQADDFESVMAHVVITRSNTADATGSE 66 Query: 55 VESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPF----TLNGDYIVDS 110 E A +++ + ++ + P E +V Sbjct: 67 TEEKGVIFANKQGD--TRIVIESPQSLVYLLDHRDLYRYIPEQEVVEEYYLPKHPQLVAP 124 Query: 111 LPSL-IYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVAR---DGTRY-SYIVWMDTESK 165 L T K L + ++G I DR + + + D R +W+D S Sbjct: 125 FLRLGFSTTGKDLEDDFLVSAIGERMIGDRRTLGLDLTPKKEKDRNRVVGMKIWIDQASW 184 Query: 166 LPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQ 199 +P+ + + N ++ + Sbjct: 185 MPVEQVIESAGNGQVMTVMFSNMARNLKLNPDLF 218 >UniRef50_B8G1H3 Putative uncharacterized protein n=2 Tax=Desulfitobacterium hafniense RepID=B8G1H3_DESHD Length = 215 Score = 58.4 bits (140), Expect = 4e-07, Method: Composition-based stats. Identities = 28/196 (14%), Positives = 61/196 (31%), Gaps = 17/196 (8%) Query: 6 FAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARL 65 ++++ G F+ + L+ M+ Q L YE G + Sbjct: 10 LLLAILIGIAFFTTGCTKPTDLNELI-GMSKNIQELYYE-----ERNSGEVIFDGKVWAK 63 Query: 66 DNR-PLAQLLQMDGPRREVV-----QRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDF 119 DN+ + + + + + G I Y + I + F Sbjct: 64 DNQFKYEVTIYSNNEKIDTLGLLTDNSGKNIIYRIQNPNASSAPSTGISGRFQGIREDSF 123 Query: 120 KRLSPYYD---FISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRD 176 R D VG + R +++ A DG S +W+D ++ +P +++ + Sbjct: 124 LRYIDGIDPQKAEIVGTEEVEGRQSVIVKTNAADGAEPS-KLWIDKKTGVPTKIE-FAEN 181 Query: 177 GETLEQFRVIAFNVNQ 192 + + + Sbjct: 182 EKIVTSLTYRNIKIGP 197 >UniRef50_Q2BEL0 Putative uncharacterized protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2BEL0_9BACI Length = 353 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 29/234 (12%), Positives = 82/234 (35%), Gaps = 22/234 (9%) Query: 1 MKQLWFAMSLVTGSLLFSA-NASATPASGALLQQMNLASQS-LNY--ELSF-ISINKQGV 55 M+ + ++ S + S +S ++ + + + Y + S+ I + + Sbjct: 1 MRFKKMITAAGAAVMILSGCSGSINVSSDEIVSNVLESGKEPAAYFGKGSYKIYSDGELT 60 Query: 56 ESLRYRHARLDNRPLAQLLQM---DGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLP 112 E + + +++ +G R + G ++ +E + D LP Sbjct: 61 EDASFEEYADKDGKRKIIMENSGENGMRFIAINDGKQLISYE-EGSNTAQSIDISGAELP 119 Query: 113 SLIYTD------FKRLSPYYDFISVGRTRIADRLCEVIRV--VARDGTRYSYIVWMDTES 164 + + + LS + + G + R +++ +++ W+D ++ Sbjct: 120 AAMTQKEQITGMLENLSGTHSYEVAGEEEMIGRDVYHLKINAKSKENLLGDMEFWVDKKT 179 Query: 165 KLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKA 218 P++ D + + + + D ++ KANLP + + + + Sbjct: 180 WFPIKSVSNSGDNR--SEVIYESVDFSPDFAADEF---KANLPEDVEIVSIDSS 228 >UniRef50_Q023A5 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q023A5_SOLUE Length = 236 Score = 58.1 bits (139), Expect = 4e-07, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 56/162 (34%), Gaps = 28/162 (17%) Query: 23 ATPASGALLQQM-NLASQSLN----YELS--FISINK----QGVESLRYRHARLDNRPLA 71 A P S +L +M + + Y S + N Q S+ ++ Sbjct: 25 AGPPSEEILARMERETGRRHDLLKQYSGSRRYTLQNARFGKQAAVSVEMQYGETAGERYT 84 Query: 72 QLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISV 131 L Q G + + T+ S+P + + + Y + Sbjct: 85 VLTQ-SGSEKLIGIIN-------------TVLTSEARASVPPE-NAEHQVSAANYRVQLL 129 Query: 132 GRTRIADRLCEVIRVVARDGTRYSY--IVWMDTESKLPMRVD 171 G +A R C V+ + R +RY VW+D ES P+R+D Sbjct: 130 GTELVAGRRCYVLGLTPRSKSRYLIVGKVWVDAESFGPVRID 171 >UniRef50_C4KC00 Putative uncharacterized protein n=2 Tax=Betaproteobacteria RepID=C4KC00_THASP Length = 267 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 32/247 (12%), Positives = 74/247 (29%), Gaps = 26/247 (10%) Query: 6 FAMSLVTGSLLFSANASATPA--------------SGALLQQM-NLASQSLNYELSFISI 50 F L LL + + + L+Q+ + +++ + Sbjct: 11 FVACLAGSLLLPTLAHATDAPAPAEPAPPEPVDAVAIDLVQRADAIRFPRESFQTEVVVR 70 Query: 51 N-----KQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPG-LEPFTLNG 104 N + + R +N + + + ++ R ++ F P +P L+ Sbjct: 71 NYTDGAEGDSRTYRILSRGNENTIVLTMEPATERGQALLMRARDLWIFMPSVSQPVRLSL 130 Query: 105 DYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDG--TRYSYIVWMDT 162 + + L+ Y GR I + V+ + A D T W+ Sbjct: 131 AQRLTGQVANGDLARANLAGDYTPTIAGRETIDGQPVVVLDLKAVDRGVTYARVRYWVGE 190 Query: 163 ESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSW 222 + P++ + G L+ R F ++ +++ L + + Sbjct: 191 RDQRPLKAEFYALSGRLLKTARYEEFR---QMAGAIRPTRLVMEDALKKGEISVLTYENM 247 Query: 223 TPTWLPQ 229 LP+ Sbjct: 248 NVRDLPE 254 >UniRef50_C6WKV9 Putative uncharacterized protein n=1 Tax=Actinosynnema mirum DSM 43827 RepID=C6WKV9_ACTMD Length = 400 Score = 57.7 bits (138), Expect = 5e-07, Method: Composition-based stats. Identities = 27/169 (15%), Positives = 52/169 (30%), Gaps = 11/169 (6%) Query: 64 RLDNRPLAQLLQMDGP-RREVVQRGNEISYFEP-GLEPFTLNGDYIVDSLPSLIYTDFKR 121 D + ++ G R +V G+ + + + + R Sbjct: 88 WTDGQGRTRVQLPSGSSERTLVNDGSTLWMWNSADQKVTRYSAAERPAEQKVADPVSAAR 147 Query: 122 -----LSPYYDFISVGRTRIADRLCEVIRVVARDGTRY---SYIVWMDTESKLPMRVDLL 173 + Y D G R+A+R + + + R V +D+E ++P+RV +L Sbjct: 148 EVVTAVQQYSDVSVDGTARVANRSAYELVLAPKPDERTVLREVRVAVDSELRVPLRVSVL 207 Query: 174 -DRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFS 221 + E Q F +S AN + A+ Sbjct: 208 TNGTTEPAAQIGFTDFEAGAQDASLFTFTPPANAEVVEGKAKDGGAERG 256 >UniRef50_UPI0001B5665E hypothetical protein StAA4_33033 n=1 Tax=Streptomyces sp. AA4 RepID=UPI0001B5665E Length = 362 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 28/235 (11%), Positives = 70/235 (29%), Gaps = 37/235 (15%) Query: 12 TGSLLFSANASATP-----ASGALLQQMNLASQSLNYELSFISIN-------------KQ 53 + A+A P ++ L+Q + A + ++ + N Sbjct: 22 LVVVAMPASAGDAPKLPQVSAEDLVQSVVTA-KPAPFDGTVKVSNDLGLPQMAMGAVPGA 80 Query: 54 GVESLRYRHARLDNRPLAQLLQMDGPRRE-VVQRGNEISYFEPGLEPFT--------LNG 104 G + D ++ G +E +V GN + ++ T Sbjct: 81 GALGIDSAQVFSDGTGKTKVSLTKGQTQETIVHNGNTVWDYDSKTNSATKTTIPAEVATK 140 Query: 105 DYIVDSLPSLIYTD----FKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRY---SYI 157 + V+ + T ++ + G +ADR + + + R Sbjct: 141 HHSVEGKAADPSTAAKELLAKVRESSNVAVDGTATVADRPAYELVLTPKPTERTLLREIR 200 Query: 158 VWMDTESKLPMRVDLL-DRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLS 211 V +D+++++P+R+ +L + + S+ + + Sbjct: 201 VAVDSQTRMPLRLSVLSNGTTAPALELAFSKIEFADQ-SADLFAFTPPKGAKVTE 254 >UniRef50_Q11RL4 Gliding motility-related protein; possible outer membrane protein n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11RL4_CYTH3 Length = 214 Score = 57.3 bits (137), Expect = 7e-07, Method: Composition-based stats. Identities = 23/161 (14%), Positives = 58/161 (36%), Gaps = 15/161 (9%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLN-YELSFISINKQGVESL- 58 MK++ + L ++ +A P + +L +M+ ++ + ++ +F K S+ Sbjct: 1 MKKIILIL-LPVFFIVIAAFGQYDPKALTILDEMSNKFKTYSSFKATFTYTLKNASASIN 59 Query: 59 RYRHA---RLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLI 115 + + +L P+ E++ G + + ++ D + Sbjct: 60 EVANGELMVRGGKYKIKL-----PKMEIINNGTTVWNYMQEANEVNISTYDPADD--DIS 112 Query: 116 YTDF-KRLSPYYDFISVGRTRIADRLCEVIRVVARD-GTRY 154 T Y + +G A + ++I +V D R+ Sbjct: 113 PTKIYTMYKKGYKYTYIGDRVEAGKTYQMIELVPEDRKNRF 153 >UniRef50_C1RMD2 Putative uncharacterized protein n=1 Tax=Cellulomonas flavigena DSM 20109 RepID=C1RMD2_9CELL Length = 416 Score = 56.5 bits (135), Expect = 1e-06, Method: Composition-based stats. Identities = 28/242 (11%), Positives = 60/242 (24%), Gaps = 47/242 (19%) Query: 16 LFSANASATPASGALLQQMNLASQSLNYELSFISINK--------------------QGV 55 + + + LL+++ A + + + G Sbjct: 39 SARSASLPLLTAEELLERVLDAEPPA-LSGTVVHTARLGLPDLSLTQVAGADPVSLLGGS 97 Query: 56 ESLRYRHARLDNRPLAQLLQM-DGPRREVVQRGNEISYFEPGLEPFT------------- 101 +LR D +++ + VV G + + + Sbjct: 98 TTLRVW---SDGGQRSRVSLLGTASEYSVVTDGAQAWTYSSSDDEVVHYAPSPQDAQRVE 154 Query: 102 ---LNGDYIVDSLPSLIYTD-FKRLSPYYDFISVGRTRIADRLCEVIRVVARDG--TRYS 155 P + D +R + T +A R + V R Sbjct: 155 ELAQASPPADLPTPDELGRDALERAREHATVGVDAATTVAGRDAYQVVVTPRSDTTLVGR 214 Query: 156 YIVWMDTESKLPMRVDL--LDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVP 213 +V +D + P+RV + D + D ++ T + + V Sbjct: 215 VVVAVDAATWSPLRVQVWSSDDAATPALELGFTDVTF-ADPGDAVLTFSAPPGASVREVV 273 Query: 214 VG 215 V Sbjct: 274 VP 275 >UniRef50_B3QSY3 Putative uncharacterized protein n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QSY3_CHLT3 Length = 238 Score = 56.1 bits (134), Expect = 1e-06, Method: Composition-based stats. Identities = 27/208 (12%), Positives = 71/208 (34%), Gaps = 24/208 (11%) Query: 17 FSANASATPASGALLQQMNLASQSLNYELSF------ISINKQGVESLRYRHARLDNRPL 70 + +A + +++++N LN E F I + + + Y D+ Sbjct: 1 MNLQIAAAQTAEEIIKKIND---LLNQETVFSKSKMVIETSSGQLRTFEYDSWGKDHNEK 57 Query: 71 AQLLQMD-----GPRREVVQRGNEISYFEPGLEPFTLNGDYIVDS------LPSLIYTDF 119 + G + ++I + P + + Sbjct: 58 TLIRYTSPARAKGQAILMRNNADDIWMYFPRTDRVRKMATHAKRQKMEGSDFSYEDMGSG 117 Query: 120 KRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYI---VWMDTESKLPMRVDLLDRD 176 +D +G +IAD C + ++ + G+ +Y +W + P++++ + D Sbjct: 118 DSFLTDFDVKLLGSGKIADEDCFKLELIRKSGSTSAYQKMSIWSAKKHFHPLQMEYFEDD 177 Query: 177 G-ETLEQFRVIAFNVNQDISSSMQTLAK 203 G + ++ + Q + ++M+ + K Sbjct: 178 GIQPAKRLTLSDIETIQGVPTAMKMIMK 205 >UniRef50_D2LWF8 Putative uncharacterized protein n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LWF8_BACS4 Length = 358 Score = 56.1 bits (134), Expect = 2e-06, Method: Composition-based stats. Identities = 21/221 (9%), Positives = 69/221 (31%), Gaps = 18/221 (8%) Query: 1 MKQLWFAMSLVTGSLLFSANASATP---ASGALLQQM-NLASQSLNY--ELSFISINKQG 54 MK + + L+T +L A +++ ++ L + + Y E G Sbjct: 1 MKNMTLLIGLITIAL-IGAGCTSSQVGVSADELYSNILSTNDDFFAYYAEGEMTFHYGDG 59 Query: 55 V-ESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVD-SLP 112 + E ++ + + ++ + + + T + D ++P Sbjct: 60 LSEKATFKEHVSQEGKRKVITIDNATNQQSIAVNDGFDLYFYEEANDTAIKIDLSDEAIP 119 Query: 113 SL-----IYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRY--SYIVWMDTESK 165 +L + + + + + + G + + + A++ +W+D ++ Sbjct: 120 TLTHREQVTSMLENMKDTHYYEVKGEVVVNGIDTYHMVLTAKESNLLIGDIELWVDKKTW 179 Query: 166 LPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANL 206 ++ + G+ + + T+ + Sbjct: 180 FMVKG--ISVAGDITTTIEYKEIDFSPQFDDDTFTIDLPSH 218 >UniRef50_Q0B2D2 Putative uncharacterized protein n=7 Tax=Burkholderia cepacia complex RepID=Q0B2D2_BURCM Length = 253 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 65/195 (33%), Gaps = 19/195 (9%) Query: 7 AMSLVTGSLLFSAN-ASATPASGA-LLQQM-----NLASQSLNYELSFIS--INKQGVES 57 +L T A AS P + +L + A N E++ + + Sbjct: 11 LAALATMVACTPAARASDAPTAAQTMLARADAYRSTAADTQTNIEITNVVGGQSGDATRY 70 Query: 58 LRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLE-PFTLNGDYIVDSLPSLIY 116 L Y D L + + DG + RG+ ++ P +NG ++ Sbjct: 71 LVYTRGNGDTLALTRSGENDGQKYLATTRGH--WFYVPNTRSAVRINGMQ--RLQGEVVI 126 Query: 117 TDFKR--LSPYYDFISV-GRTRIADRLCEVIRVVARD-GTRY-SYIVWMDTESKLPMRVD 171 +D R + Y + G T IA + + + A D Y + +W+ ++ +P+R Sbjct: 127 SDITRTHWADSYRASTAPGTTTIAGKPATELDLTATDPDNVYPTIKLWVVPDTDVPVRAQ 186 Query: 172 LLDRDGETLEQFRVI 186 G Sbjct: 187 FFLASGLLFRSADFS 201 >UniRef50_C0GCR8 Outer membrane lipoprotein-sorting protein-like protein n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GCR8_9FIRM Length = 336 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 50/322 (15%), Positives = 111/322 (34%), Gaps = 38/322 (11%) Query: 24 TPASGALLQQMNLAS-QSLNYELSF---ISINKQGVESLRYRHARLDNRPLAQLLQMDGP 79 + + L +Q+ A ++ +Y + + + R + ++ Sbjct: 19 SMTAERLPEQVEEALGKAESYYAELEATVYSTEGE-QYYRIKQWMEAPANW-RVEVTSTT 76 Query: 80 RREV-VQRGNEISYFEPGLEP-FTLNGDYIVDSLPSL-IYTDFKRLSPYYDFISVGRTRI 136 +V + G +I ++PG+E + L+ D + P + RL ++ G+ Sbjct: 77 GTQVFICDGTQIYVYQPGIEDHYRLDADLAAEVSPPFFLAGYLNRLLEAEEYSFEGQQEK 136 Query: 137 ADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISS 196 + V D +W+D S+ P+ V+ D + L + + +N IS Sbjct: 137 DGQKYYVASFK-GDRDDELVRLWLDRRSRFPVIVETFIND-QLLSRVKCTTLQLNDKISP 194 Query: 197 SMQTLAKANLPPLLSVPVGE-----KAKFSWTPTWLPQGFSEVSSSRRPLPTMDNMPIES 251 + + + L S + E +A+ SW G+ S + + I Sbjct: 195 DLFQFSAQDQWELESHCLVEPMSLDEAQDSWPYPVYTPGYVPEGSFLFLISQSEENQIPQ 254 Query: 252 RLY---SDGLFSFSVNVNRATPSST------DQMLRTGRRTVSTSVRDNAEIT------- 295 L+ D + F+V + +T +++ G + T Sbjct: 255 LLFIYKGD--YHFTVVQSPSTEKQPHLSEATQEVVINGITGYYHPNTSDELATLWWSNET 312 Query: 296 ----IVGELPPQTAKRIAENIK 313 + G LP + ++AE+++ Sbjct: 313 ISFVLSGSLPQEEMLQVAESMQ 334 >UniRef50_Q1K3Y0 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K3Y0_DESAC Length = 271 Score = 55.4 bits (132), Expect = 3e-06, Method: Composition-based stats. Identities = 18/120 (15%), Positives = 41/120 (34%), Gaps = 7/120 (5%) Query: 91 SYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPY----YDFISVGRTRIADRLCEVIRV 146 + P L+ ++ + + + + IA R C + Sbjct: 119 HLYLPALKRTRRIVAAQQGRSFVNSDFTYEDMQRHPLDEWTYRLDAEQMIAGRNCYQLIS 178 Query: 147 VARDGTRYSYI---VWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAK 203 + T Y W+D E+ LP++ ++ + + + V F + I++ M L + Sbjct: 179 TPKPDTETQYRKIASWIDRETFLPLKTIFWNKKSQPFKTYTVQTFKIVDGIATEMDVLME 238 >UniRef50_Q73L56 Putative uncharacterized protein n=2 Tax=Treponema RepID=Q73L56_TREDE Length = 261 Score = 53.8 bits (128), Expect = 7e-06, Method: Composition-based stats. Identities = 22/107 (20%), Positives = 39/107 (36%), Gaps = 5/107 (4%) Query: 88 NEISYFEPG-LEPFTLNGDYIVDSLPS--LIYTDFKRLS-PYYDFISVGRTRIADRLCEV 143 ++ + P + ++G D Y D Y +G +I + C Sbjct: 104 DDRWLYMPALKKAKRISGSSSQDYFMGTDFTYDDMSGRKVDDYKHSLLGEEKIDSKDCWK 163 Query: 144 IRVVARDGTRYS-YIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFN 189 I + + YS Y+ W+D ES L ++ + D G L+ V Sbjct: 164 IESIPVKKSMYSKYVSWIDKESLLNIKAEFYDEQGSILKVLTVSGIE 210 >UniRef50_A6L6C4 Putative uncharacterized protein n=6 Tax=Bacteroides RepID=A6L6C4_BACV8 Length = 201 Score = 53.4 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 22/211 (10%), Positives = 65/211 (30%), Gaps = 16/211 (7%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 MK+ + + ++ L S +A + +L + A Q + G +L Sbjct: 1 MKRTYLLVLILF--LSVSLSAQKDKQAREILDKTANALQQAG--GIRATFGGTGNGTLLL 56 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 + ++ + G + E ++ + Y Sbjct: 57 K-----GNRF----YLNSGGIQSWFDGTTQWSYLESSEEVNVSNPTPEELQTINPYALLS 107 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVA-RDGTRYSYIVWMDTESKLPMRVDLLDRDGET 179 Y++ G + + + S +++ +++ P+ + + ++ ++ Sbjct: 108 IYKSGYNYKYTGIKSRNGKQGFEVILTPENKQDITSITLFV-SQTYQPLYIKV-EQSNKS 165 Query: 180 LEQFRVIAFNVNQDISSSMQTLAKANLPPLL 210 + V ++ NQ + ++ K P Sbjct: 166 ANEIIVTSYQTNQPLDNATFKFDKKKFPNAE 196 >UniRef50_C1VEJ2 Outer membrane lipoprotein-sorting protein n=1 Tax=Halogeometricum borinquense DSM 11551 RepID=C1VEJ2_9EURY Length = 232 Score = 53.4 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 35/197 (17%), Positives = 65/197 (32%), Gaps = 12/197 (6%) Query: 7 AMSLVTGSLLFSANA-SATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARL 65 + L+ G L ++ S + G +Q A ++ S+R + Sbjct: 18 GLILLAGCLSVPGSSISNAESVGDQVQARYDAIDRYEATVTKTVQTTSDTSSVRAT-VSV 76 Query: 66 DNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPY 125 D A++ GPR V + +S P + + D L Sbjct: 77 DTAESARIEYHTGPRAGTVANID-LSSASPARPSLSTSVQSATDGQVPTYGALASELVRS 135 Query: 126 YDFISVGRTRIADRLCEVIRVVARDGTRYS------YIVWMDTESKLPMRVDL--LDRDG 177 + T + R V+ +V VW+DTE +P+R++ G Sbjct: 136 NNVTVERTTVLDGRQTAVVSLVPNADETNGTAVSVERRVWVDTERLIPLRIETTWTGESG 195 Query: 178 ETL-EQFRVIAFNVNQD 193 ET+ E R ++++ Sbjct: 196 ETVTETVRYTNVTLSEE 212 >UniRef50_C6Y2Q1 Outer membrane lipoprotein carrier protein LolA n=1 Tax=Pedobacter heparinus DSM 2366 RepID=C6Y2Q1_PEDHD Length = 220 Score = 53.0 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 31/220 (14%), Positives = 77/220 (35%), Gaps = 13/220 (5%) Query: 1 MKQLW-FAMSLVTGSLLFSANASATPASGALLQQMNLASQS-----LNYELSFISINKQG 54 MK + F + L T ++A+A + +L ++ +S ++ L S Sbjct: 3 MKMIKKFTLLLFTLGTAYAAHAQTDAQARTILNAVSKKYRSYDIVKTDFTLIIESQQANA 62 Query: 55 VESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSL 114 E+ + N ++ +E++ G + + + + ++ Sbjct: 63 KETQQGTLYVKANASKYKVST---GGQEMISDGKTLWTYLKEEKEVQVTDADNSNN-ALN 118 Query: 115 IYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTR--YSYIVWMDTESKLPMRVDL 172 F + +I G ++ ++ ++I + D + + + +D +K + Sbjct: 119 PAKIFTIYESGFKYIYTGDKKVGTKIYQMIDLTPTDINKPYFKIRLSIDKVAKQIASALI 178 Query: 173 LDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSV 212 L+++G + V F N + S T P + V Sbjct: 179 LEKNGNRY-TYNVRTFVPNVKVPESTFTFDSKKYPGVEVV 217 >UniRef50_C6CVN7 Outer membrane lipoprotein-sorting protein-like protein n=1 Tax=Paenibacillus sp. JDR-2 RepID=C6CVN7_PAESJ Length = 409 Score = 53.0 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 27/212 (12%), Positives = 70/212 (33%), Gaps = 17/212 (8%) Query: 1 MKQL-WFAMSLVTGSLLFSA-NASATPASGALLQQMNLASQSLNYELSFI-SINKQGVES 57 M+++ W A L+ SL+ SA + L ++ + +Y+ + ++ E Sbjct: 1 MRRMTWAAAILLVFSLVLSACGKKDAESVVKELDKVVNNME--SYQGTGTMKLHTGQQEL 58 Query: 58 LRYRHARLDNRPLAQLLQMDGPR---REVVQRGNEISYFEPG-LEPFTLNGDYIVDSLPS 113 ++ + + + V++ + + P + F D+ + Sbjct: 59 TYNVEVSYQKPHYYRIKLTNAEKDITQIVLRNDDGVFVLTPRLNKVFRFQSDWPQNQGQV 118 Query: 114 LIYTDF--KRLSPYY-DFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRV 170 +Y L+ F ++ + D + +GT +W++ P++V Sbjct: 119 YLYQTLIQSILTDNSRQFAVDDKSYVFD-----VMANYNNGTLARQKIWLNKSDYKPVQV 173 Query: 171 DLLDRDGETLEQFRVIAFNVNQDISSSMQTLA 202 + D + + Q +F + Sbjct: 174 QVSDANASVMVQVDFTSFEFGPSFDKTTFETE 205 >UniRef50_UPI0001C31609 hypothetical protein Cwoe_5741 n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31609 Length = 403 Score = 53.0 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 41/313 (13%), Positives = 89/313 (28%), Gaps = 65/313 (20%) Query: 63 ARLDNRPLAQLLQMDGPRREVVQRGNEISYFE--------------PGLEPFTLNGDYIV 108 D R +L G +V G ++ F+ P E + Sbjct: 94 WWSDGRFRLELQSQ-GGDAQVTSDGETLTIFDARTDTAYRIALPHDPSAEQRSDRERPAG 152 Query: 109 DSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDG--TRYSYIVWMDTESKL 166 + R++ + +A R +R+ +D + + D + + Sbjct: 153 PPSLDEVRRGLARIAEAWSVAGPEPVNVAGRPSYSVRIAPKDDGGLLGAATLAWDAANGV 212 Query: 167 PMRVDLLDRDG-ETLEQFRVIAFNVNQDISSSMQTLAKANL------PPLLSVPVGEKAK 219 P+R + + + + R + + ++ +Q ++ P + ++P A Sbjct: 213 PLRAAVYAEGQADPVLELRATDVSFGKIAAADLQADPPSDARIVDLTPRVATLPGDPGAA 272 Query: 220 F----SWTP--TWLPQGFSEVSSSR-----RP-----LPTMDNMPIESRLYSDGLFSFSV 263 LP F + R + Y +GL +V Sbjct: 273 PRPIRGVRAVQAQLP--FRLAAPDTLAGLPRRDVWLAHGGSRDSAAAVVTYGEGLGGIAV 330 Query: 264 NVNRATPS--------------STDQMLRTGRR---------TVSTSVRDNAEITIVGEL 300 A+ ++ G T+ T +D ++G + Sbjct: 331 VQTEASEQALGDLGGGAGDHALRLPRVNIDGATGSELATALGTLLTFEQDGVNHVVIGSI 390 Query: 301 PPQTAKRIAENIK 313 PPQ A+ A ++ Sbjct: 391 PPQAAETAARELR 403 >UniRef50_A4F8F3 Putative uncharacterized protein n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F8F3_SACEN Length = 345 Score = 53.0 bits (126), Expect = 1e-05, Method: Composition-based stats. Identities = 18/152 (11%), Positives = 40/152 (26%), Gaps = 14/152 (9%) Query: 83 VVQRGNEISYFEPGLEPFTLNGDYIVDSLPS-LIYTDFKRLSP--------YYDFISVGR 133 +V G + + T + P D +S + G Sbjct: 111 IVNDGATVWNWNSAERTVT-RAAHDSAPKPEHQAPADPAAMSRQLIDAVRQTSEVSVDGT 169 Query: 134 TRIADRLCEVIRVVARDGTRY---SYIVWMDTESKLPMRVDL-LDRDGETLEQFRVIAFN 189 +A R + + + R + +D E ++P+ V + + + Sbjct: 170 ASVAGRDAYELVLKPKPTERTVLREVRIAVDAEKRIPLAVTVGTNGSDSPALHVGFSNLD 229 Query: 190 VNQDISSSMQTLAKANLPPLLSVPVGEKAKFS 221 + Q + + A + G K Sbjct: 230 LAQPDPALFRFTAPPGAQVREAEETGPHGKPG 261 >UniRef50_A7BRX8 Putative uncharacterized protein n=1 Tax=Beggiatoa sp. PS RepID=A7BRX8_9GAMM Length = 254 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/174 (10%), Positives = 51/174 (29%), Gaps = 8/174 (4%) Query: 48 ISINKQGVESLRYRHARLDNRPLAQLLQMDG--PRREVVQRGNEISYFEPGLEPFTLNGD 105 + RY + + + ++ + ++ R + + P + Sbjct: 60 TTTANGKKTVKRYLVRVT-GKERSLVKFLNHEEQGQYLLMRNEGMWMYFPNTRR-AIRIT 117 Query: 106 YIVDSLPSLIYTDFKRL--SPYYDFISVGRTRIADRLCEVIRVV--ARDGTRYSYIVWMD 161 + + D L S Y +G + V+ + +R T +W+ Sbjct: 118 PLQRLTGNTSNGDIANLPFSGNYTPQLLGSENVGGIATWVLELNAFSRAATYPKIKLWVK 177 Query: 162 TESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVG 215 ++ P R + G+ ++ +A+ + + + P + Sbjct: 178 QDNHTPYRAEYYLASGKLMKNVDYVAYEEREGVLVLKTMQFRVPHKPGEVSEMQ 231 >UniRef50_Q47DF5 Putative uncharacterized protein n=5 Tax=Betaproteobacteria RepID=Q47DF5_DECAR Length = 265 Score = 52.7 bits (125), Expect = 2e-05, Method: Composition-based stats. Identities = 18/140 (12%), Positives = 47/140 (33%), Gaps = 3/140 (2%) Query: 54 GVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPG-LEPFTLNGDYIVDSLP 112 + R +N + + ++ +G ++ F P +P ++ + Sbjct: 78 DLHKYRVLSKGNENAVVMVTEPASERGQIILMKGRDLWVFMPEVSQPVRISLAQRLTGQV 137 Query: 113 SLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIV--WMDTESKLPMRV 170 + S Y+ + +I V+ ++A D + V W++ +S P++ Sbjct: 138 ANGDLARANFSGDYNPKIISTEKIGGESYHVLELIAVDRSVTYQRVVYWVNEKSGWPLKA 197 Query: 171 DLLDRDGETLEQFRVIAFNV 190 + L++ F Sbjct: 198 EFYSLSNRLLKKCTYENFQT 217 >UniRef50_C1A7M2 Outer-membrane lipoprotein carrier protein n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A7M2_GEMAT Length = 230 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 25/234 (10%), Positives = 68/234 (29%), Gaps = 45/234 (19%) Query: 4 LWFAMSLVTGSLLFSANASATPASGALLQQMNLA--------------------SQSLNY 43 + + V + S A T + +++ A ++++N Sbjct: 14 MAVTAACVAALMTTSVGAQGTADAS--YERVAKAWAGTHTLRADFEQKITNPLLARTVNS 71 Query: 44 ELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEP---F 100 + F+ + S+ + D +V G + + P P Sbjct: 72 KGVFLQERPGKL-SITFTQPAGDR---------------IVGDGKWLWVYLPSSAPGQVL 115 Query: 101 TLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSY---I 157 L D + L+ + + + R ++++ + + + Sbjct: 116 KLPADADGAIVADLLSQLLDTPKKAFTISGGESSPVDGRAARRVQLIPKAAGTAPFQKAV 175 Query: 158 VWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLS 211 +W+D + P+RV ++D G + ++ + + + S Sbjct: 176 LWLDEKDPRPLRVQVVDGQG-VDRTITLTTWSPEATLPADAFRFNVPKGVKVAS 228 >UniRef50_Q01SD9 Putative uncharacterized protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01SD9_SOLUE Length = 232 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 30/230 (13%), Positives = 72/230 (31%), Gaps = 23/230 (10%) Query: 3 QLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYEL----------SFISINK 52 F +L+ + + S A + A+L+ ++ A S+ ++ + + Sbjct: 7 PFVFTGTLLVAASVLSGAPLADTSLEAVLKSIDQA--SVGFKGLTADIRKLAHTQVVNVD 64 Query: 53 QGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNG----DYIV 108 E + + ++ ++ V G ++ + P L +V Sbjct: 65 DVSEGVIAVKRFKPHDTRIRIDFKQPSQQMVAIGGGKVEIYYPKLNEVQEGDLGKIRSLV 124 Query: 109 DSLPSL-IYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYI----VWMDTE 163 D L L + L Y G + I ++ + ++ +W+ ++ Sbjct: 125 DQLMLLGFGANSADLQEAYAVSLGGPDTVNGERATRIVLIPKSKEILQHVKKCELWI-SD 183 Query: 164 SKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVP 213 L ++ L G+ L N++ +I S L + Sbjct: 184 KGLTIQQKLDQGGGDYLLS-TYSKINLSANIPESAVKLDVPKGAKRTKLK 232 >UniRef50_Q4VR68 Putative outer membrane lipoprotein carrier protein n=1 Tax=Desulfovibrio gigas RepID=Q4VR68_DESGI Length = 224 Score = 52.3 bits (124), Expect = 2e-05, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 84/230 (36%), Gaps = 19/230 (8%) Query: 1 MKQLWFAMSLVTGS---LLFSAN-ASATPASGALLQQMN---LASQSLNYELSFISINKQ 53 M++L A LV G + FS A+++P + ALL + + Q+ S + IN Sbjct: 1 MQKLLIACVLVAGIALTMGFSMQSAASSPETNALLDAIQKQYESMQTFRAHFSQVLINSA 60 Query: 54 GVESLRYRHARLDNRP-LAQLLQMDGPRREVVQRGNEIS-YFEPGLEPFTLNGDYIVDSL 111 E+ R +P L + ++ + +V + + YFE + I+DS Sbjct: 61 SREAERRTGRVSMKKPGLIRWETLEPEKELLVAAKDVVWDYFEAEKTAYKYKASEILDSK 120 Query: 112 PSL-IYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTR--YSYIVWMDTESKLPM 168 L RL ++ ++ GR + + R+ +W D + L Sbjct: 121 TMLHFLAGTTRLDKDFEVVNAGRED----SLTRLDLTPREPEPGLVQASIWADPATGLIQ 176 Query: 169 RVDLLDRDGETLEQ-FRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEK 217 R+ ++D G E ++N + + T + V + Sbjct: 177 RISMIDFYGN--ENVVAFTDMSLNPPLDEGLFTFTPPAGVEVFDNTVDAQ 224 >UniRef50_Q0A7Y0 Outer-membrane lipoprotein carrier protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=LOLA_ALHEH Length = 214 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 29/220 (13%), Positives = 66/220 (30%), Gaps = 20/220 (9%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 MK L+ L S + + + F ES R Sbjct: 1 MKIKLAFAVLLALCLSLSVMPVLAEQAATRADLARYYDDVTSLQGRFTQQTHD--ESGRI 58 Query: 61 RHARLDNRPLAQ-----LLQMDGPRREVVQRGNEISYFEPGLEPFTLNG--DYIVDSLPS 113 + + + +E+V G + ++ L+ T+ D + + Sbjct: 59 LEESSGEFWIERPDRFRWNYAEPWPQEIVSDGERLWVYDQDLDQVTVRSLADSLGRGPAT 118 Query: 114 LIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDG-TRYSYIVWMDTESKLPMRVDL 172 L+ L ++ R+A + R+ Y +++ + E +P+ ++L Sbjct: 119 LLGGTLGELEEAFELTFPEPGRVA--------LQPREATLDYEHVL-LRLEDGVPVELEL 169 Query: 173 LDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSV 212 D G+ + R+ A + +I ++ Sbjct: 170 EDGLGQ-ITVLRLEALERDVEIDPGRFEFQPPEGADVIEA 208 >UniRef50_Q5UWV9 Putative uncharacterized protein n=1 Tax=Haloarcula marismortui RepID=Q5UWV9_HALMA Length = 409 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 30/257 (11%), Positives = 70/257 (27%), Gaps = 58/257 (22%) Query: 11 VTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESL--RYRHARLDNR 68 + S+ P+ + + ++N ++ + ++ + R Sbjct: 29 CSAIGSLSSENEELPSEDEATDRYA-SVNAVNATVTTVQTRNNKTATIVTQKRERVGSFA 87 Query: 69 PLAQLLQMD----------GPRREVVQRGNEISYFEPGLE-----PFTLNGDYIVDSLPS 113 +++ ++ G ++ G+ + ++P F + + P Sbjct: 88 YFERVMSVNRAEEMRQPRVGEGGFIIANGSTLVSYDPESNELHRMSFQTDNSSTEATYPE 147 Query: 114 LI---------------------------YTDFKRLSPYYD-----FISVGRTRIADRLC 141 L+ + S Y + G I R Sbjct: 148 LLAAAKNNRPVPQPTATPGISPLPVVPQKNESGENSSSAYRGGNVTVLYNGTESIDGREA 207 Query: 142 EVIRVVAR--DGTRYSYIVWMDTESKLPMRVDL----LDRDGETLEQFRVIAFNVNQDIS 195 + + D + S +W+DTES P++ D E + +R + F N Sbjct: 208 YRLELAPASEDMSLRSQTLWLDTESLFPIKRQTEFVAYGDDYEYIVTYRNVTF--NPTFE 265 Query: 196 SSMQTLAKANLPPLLSV 212 L +P Sbjct: 266 PGTFQLEPQEIPDDAQQ 282 >UniRef50_Q08Y85 Putative uncharacterized protein n=1 Tax=Stigmatella aurantiaca DW4/3-1 RepID=Q08Y85_STIAU Length = 1047 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 34/211 (16%), Positives = 69/211 (32%), Gaps = 40/211 (18%) Query: 5 WFAMSLVTGSLLFSANASATP-ASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHA 63 A+ + GSLL +SA + ++ ++ A+ KQG +R Sbjct: 793 VLAVVVGLGSLLAPGPSSAAELTAQEIIDRLTDAN---------TVGFKQGAAEMRLVLQ 843 Query: 64 RLDNRPLAQL-----LQMDGPRREVVQ--------------------RGNEISYFEPGLE 98 + L M+G R +++ + +E+ + P L+ Sbjct: 844 PDGGEKRERRFITRTLDMEGKSRNLIRFLSPAEVQGSAFLMLEHGDGKEDELFVYLPALK 903 Query: 99 PFT-LNGDYIVDSL--PSLIYTDFK-RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRY 154 ++ + + Y D + + + ++ C + +D RY Sbjct: 904 RTRRISEAQKSGAFMGSDVSYADLEYQDLKSSSHQKLADVKLDGVDCYQLVSTPKDKERY 963 Query: 155 S-YIVWMDTESKLPMRVDLLDRDGETLEQFR 184 S VW+ E L ++ D G + FR Sbjct: 964 SKIEVWVRKEGFLAQQLKFYDASGTLQKVFR 994 >UniRef50_C7Q2E8 Putative uncharacterized protein n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q2E8_CATAD Length = 395 Score = 51.9 bits (123), Expect = 3e-05, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 55/183 (30%), Gaps = 23/183 (12%) Query: 70 LAQLLQMDG-PRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYD- 127 ++ D ++ + G+++ ++ + V S L + L+ + Sbjct: 119 RERIGIQDTLSEYDLFRDGSDLWMWDSAHQTARHGSVDSVTS-ALLSFASPSDLAKTFTG 177 Query: 128 ------------FISVGRTRIADRLCEVIRVVAR-DGTRYS-YIVWMDTESKLPMRVDLL 173 + R+A R C V+++ DGT V +D + +P+ V + Sbjct: 178 PSAVKTLLFDTAYSMRDTRRVAGRDCYVLQITPHSDGTTVGSVEVAVDAATGVPLSVSVY 237 Query: 174 -DRDGETLEQFRVIAFNVNQDISSSMQTLAKA-----NLPPLLSVPVGEKAKFSWTPTWL 227 + + + D S T P L A WT + Sbjct: 238 PTGSSSPAIKAEFETVSFSADPSELRFTPPPGAKVVEEATPDLPANPVHGAGTDWTSAAV 297 Query: 228 PQG 230 G Sbjct: 298 IGG 300 >UniRef50_C1DQJ1 Putative uncharacterized protein n=1 Tax=Azotobacter vinelandii DJ RepID=C1DQJ1_AZOVD Length = 205 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 24/200 (12%), Positives = 57/200 (28%), Gaps = 39/200 (19%) Query: 31 LQQMNLASQSL-NYELSF-ISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGN 88 L + Q+L +Y ++ ++ LRY + + + + Sbjct: 16 LAEAQERFQALTSYRVTVRLNAEGSEQHVLRYFYRKPGWVRIEFIRP----------HPG 65 Query: 89 EISYFEPGLEPFTL---------------NGDYIVDSLP-SLIYTDFKRLSPYYD----- 127 + + P + + I + +D L Sbjct: 66 LVLIYNPASRRVRIWPFGLDHLPRLNLAPDNPLIRGPHGIRVDQSDIGVLLDSLRERQAR 125 Query: 128 --FISVGRTRIADRLCEVIRV----VARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLE 181 ++G +A R + + + + Y +W+ +S LP+RV+ G LE Sbjct: 126 GTLAALGSGEVAARPVAGFEIREEGLGKPSGAHHYRIWLARDSLLPLRVERFGTGGRLLE 185 Query: 182 QFRVIAFNVNQDISSSMQTL 201 + ++ + Sbjct: 186 SVDMADLEIDTPFPERFFSP 205 >UniRef50_Q21L45 Putative uncharacterized protein n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21L45_SACD2 Length = 266 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 19/165 (11%), Positives = 50/165 (30%), Gaps = 14/165 (8%) Query: 88 NEISYFEPGLEPF-TLNGDYIVDSLPS---LIYTDFKRLSPYYDFISVGRTRIADRLCEV 143 ++ + PGL+ ++ + + + Y + + + V Sbjct: 109 DDQWLYLPGLKRVKRISSSNKAGAFMNSEFAFEDIASQEVDKYTYTYLRDDVLDGIDVFV 168 Query: 144 IRVVARDGTRYSY---IVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQT 200 + D + Y VW+D +P+++D DR G + + +N Sbjct: 169 NQSDPVDP-KSGYSKLEVWIDQARYIPLKIDFYDRGGRLKKTLHMKEYN---QYLDKYWR 224 Query: 201 LAKANLPPLLSVPVGEKAKFSWTPTWLPQGFSEVSSSRRPLPTMD 245 + + + W G+++ ++ L + Sbjct: 225 AHRWEMTNHQTGKSTVLLMSDWQFNN---GYTDNDFNKNSLSRVK 266 >UniRef50_B1ZYB9 Putative uncharacterized protein n=1 Tax=Opitutus terrae PB90-1 RepID=B1ZYB9_OPITP Length = 300 Score = 51.5 bits (122), Expect = 4e-05, Method: Composition-based stats. Identities = 44/226 (19%), Positives = 75/226 (33%), Gaps = 40/226 (17%) Query: 3 QLWFAMSLVTGSLLFSANASAT-------------PASGALLQQMNLASQSL----NYEL 45 + + +L G + + A A+ P ++ + NY L Sbjct: 14 RAFLLATLAGGLITPALWAQASRTTSRPPLISIGKPDPDD-ARKALEQLRRQGIAGNYYL 72 Query: 46 SFISINKQGVESLRYRHARLDNRPLA-------QLLQMDGPR---REVVQRGNE--ISYF 93 + R+ RL L DG R ++Q G E + + Sbjct: 73 ELQVRIMPRRGAERFVLGRLWGGRNEIGPLTRVSLTPEDGAGGEQRLLIQNGRESGVWRW 132 Query: 94 EPGLEPFTLNGDYIVDSL-PSLIYTDFKRLSPY-Y--DFISVGRTRIADRLCEVIRVVAR 149 +PG P L + ++D L P T F P+ Y F G R R VI + Sbjct: 133 QPGRGPEQLGIETLLDPLIPDTELTAFDLQMPFVYWEQFTYEGLRRFRGRPAHVIELQPP 192 Query: 150 DGT--RY----SYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFN 189 R+ V +D++ ++ +LLDR G L+ ++ Sbjct: 193 PEFAARHPDIGGVRVHLDSQFNALVQTELLDRRGAVLKTLSLVDLK 238 >UniRef50_A6E6H9 Gliding motility-related protein; possible outer membrane protein n=1 Tax=Pedobacter sp. BAL39 RepID=A6E6H9_9SPHI Length = 216 Score = 51.1 bits (121), Expect = 5e-05, Method: Composition-based stats. Identities = 26/218 (11%), Positives = 71/218 (32%), Gaps = 14/218 (6%) Query: 2 KQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQS-----LNYELSFISINKQGVE 56 K++W LV + F+ A + A+L ++ + ++ + + E Sbjct: 3 KRIWL--CLVAIATTFAGYAQTDAKAKAILAGVSKKYHTYDIVKTDFTFTLDNQQANVKE 60 Query: 57 SLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIY 116 + + ++ + +E+ G + + + Sbjct: 61 TQQGTLYVKAKANKYKVSMTN---QELYSDGKSQWTYLKEDKEVQVTDVDPSGD-ALNPA 116 Query: 117 TDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTR--YSYIVWMDTESKLPMRVDLLD 174 F + ++ G +++ ++ ++I + D + Y + +D +K V + D Sbjct: 117 QIFTVYEKGFKYLYTGESKLGSKVYQMIDLTPLDAKKSYYKIRLKIDKVAKQIANVLIFD 176 Query: 175 RDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSV 212 ++G + V F N + + P + V Sbjct: 177 KNGNRY-TYNVKTFLPNAKVPETTFAFDPKKYPGVEVV 213 >UniRef50_C6MFK6 Putative uncharacterized protein n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MFK6_9PROT Length = 212 Score = 50.7 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 21/114 (18%), Positives = 39/114 (34%), Gaps = 5/114 (4%) Query: 92 YFEPGLEPFT-LNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVA-R 149 P + +G I S +Y + L + +G+ I + V A R Sbjct: 98 SLSPENKMIQNPSGQRIDHSDLGALYKNIMTLQDHGRTTVIGQESIVGETVLHLNVEAER 157 Query: 150 D---GTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQT 200 D + +W+D + P++V DG +EQ + + +N Sbjct: 158 DFSVNDIAQFQLWLDIVTGFPLKVISYKADGSWIEQVEMSDYRINPVFPPDFFD 211 >UniRef50_O83768 Uncharacterized protein TP_0789 n=2 Tax=Treponema pallidum RepID=Y789_TREPA Length = 258 Score = 50.7 bits (120), Expect = 7e-05, Method: Composition-based stats. Identities = 23/215 (10%), Positives = 66/215 (30%), Gaps = 21/215 (9%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESL-- 58 MK++ + + S A + ++ + + S Sbjct: 1 MKRIAYVPLCAVVGGMCSMWAQSATDVMGSFKKTAETGTMGT-QARMVVRKAGKTVSTLV 59 Query: 59 --RYRHARLDNRPLAQLLQMD-----GPRREVVQRGNEIS-YFEPGLEPFTLNGDYIVDS 110 +Y + + G R +Q+ + + + + D+ Sbjct: 60 LKQYTRYEKSGEQKTLIEFLSPLSVRGTRFLSLQKKDGAWEQYLYLPKLARVRSITGGDA 119 Query: 111 LPSLIYTDFK--------RLSPYYDFISVGRTRIADRLCEVIR-VVARDGTRY-SYIVWM 160 S + TDF ++ + G ++C I+ + + RY ++W+ Sbjct: 120 HASFMGTDFSYHDLSLVGGVADLDECTLDGTESYGGKMCVRIQTLSHKPQARYVRALLWI 179 Query: 161 DTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDIS 195 + E+ ++ + D+ + ++ + + Q + Sbjct: 180 EQETGRFVKGEFFDKKDKRVKIMTLSDYETIQGVD 214 >UniRef50_A6Q8U0 Putative uncharacterized protein n=1 Tax=Sulfurovum sp. NBC37-1 RepID=A6Q8U0_SULNB Length = 250 Score = 50.3 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 39/259 (15%), Positives = 95/259 (36%), Gaps = 28/259 (10%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINK---QGVES 57 MK++ A + G L SA + ++M+ S++ E + N + Sbjct: 1 MKKMVIAG--MVGILTLLEAESAMTVAKKSYEKMSGYQSSIS-ETKMVLKNARGVANIRK 57 Query: 58 LRYRHARLDNRPLAQLLQMDGPRR--------EVVQRGNEISYFEPGLEPF-TLNGDYIV 108 +R + +N + ++ + E + ++ + P L+ ++ Sbjct: 58 MRIKKLEGNNGDRSLIVFLYPTDIKDTKLLSYEQIGTDDKQWLYLPALKRIKRISSRNKS 117 Query: 109 DSLPSLIYTDFKRLSPYYD-FISVGR-TRI--ADRLCEVIRVVARDGTR-YSYIV-WMDT 162 S + ++ S Y + G ++ + ++ + +D YS + ++D Sbjct: 118 GSFMASEFSYEDIASQNYRNYSYKGEAEKVTRNGKKYLKVKRIPKDAHSGYSRQIVYIDP 177 Query: 163 ESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSW 222 ++ L M + DR+G L++ + + + I ++ + +V G+ W Sbjct: 178 KTYLAMFGEYYDRNGRLLKKVSFLKYRKIKGIDRIVRM-------EMKNVQNGKSTLLVW 230 Query: 223 TPTWLPQGFSEVSSSRRPL 241 + G +E S+R L Sbjct: 231 ESDKVKAGLNEADFSKRVL 249 >UniRef50_A1WM62 Exporters of the RND superfamily-like protein n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WM62_VEREI Length = 1051 Score = 50.3 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 70/220 (31%), Gaps = 48/220 (21%) Query: 7 AMSLVTGSLLFSANASATP-ASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARL 65 + L G ++ +A A + ++++ NY+ + + + + R Sbjct: 791 VVLLALGVVMSHQSAQAQELKADEIMER--------NYQATRVDNSLSE-ATFRLI--SS 839 Query: 66 DNRPLAQLL------QMDGPR-REVVQ-------------------RGNEISYFEPG-LE 98 + + Q+DG R V++ +EI + P + Sbjct: 840 SGQERVRKTFGATKLQLDGVGNRRVIRFLSPSDVRNTTTLLVENAANEDEIWVYLPALKK 899 Query: 99 PFTLNGDYIVDSLPSLIYTDFKRLS---PYYDFISVGRTRIADRLCEVIRVVAR------ 149 P L G+ S + + + V + ++A V+ V + Sbjct: 900 PRRLAGNNKKSSFVGTDLSYGDLVGHKPQNWTHKFVRQEKLATFTTYVVESVPKSPDIAV 959 Query: 150 DGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFN 189 D + W+D +S + ++VD D G L+ Sbjct: 960 DSGYSKRVSWIDKDSFVAIKVDFYDPAGTLLKTADSSELK 999 >UniRef50_B5JWQ7 Outer membrane lipoprotein-sorting protein n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JWQ7_9GAMM Length = 275 Score = 50.3 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 17/108 (15%), Positives = 35/108 (32%), Gaps = 6/108 (5%) Query: 88 NEISYFEPGLEPF-TLNGDYIVDSL--PSLIYTDF-KRLSPYYDFISVGRTRIADRLCEV 143 ++ F P L ++ Y D + Y + +G + Sbjct: 117 DDQWLFLPALRRVKRISSRNKSGPFMGSEFAYEDLGSQEVEKYSYKLLGEETVEGVETYK 176 Query: 144 IRVVAR-DGTRYSYIV-WMDTESKLPMRVDLLDRDGETLEQFRVIAFN 189 + + + + Y+ + W+D E +VD DR E L+ + Sbjct: 177 VERIPEYEHSGYTKQISWIDKEELRTRKVDYYDRKDELLKTLVFSDYE 224 >UniRef50_B1WVL4 Putative uncharacterized protein n=1 Tax=Cyanothece sp. ATCC 51142 RepID=B1WVL4_CYAA5 Length = 267 Score = 50.3 bits (119), Expect = 8e-05, Method: Composition-based stats. Identities = 45/257 (17%), Positives = 78/257 (30%), Gaps = 41/257 (15%) Query: 1 MKQLW---FAMSLVTGSL-------LFSANASATPASGALLQQMN---LASQSLNYELSF 47 M LW SLV+ SL + P + AL++ M+ A+ S+ + Sbjct: 1 MSSLWKKSLLFSLVSVSLLAIPQRITAQTKSEIEPQAIALIKSMSDRLTATDSMTFTAVS 60 Query: 48 ISINKQGVESLRYRHARLDNRPLAQLLQM------DGPRREVVQRGNEISYFEPGLEPFT 101 + + + + L + Q+ DGP E G I+ + P Sbjct: 61 TYESPSRLGPP-LVYTTISEVTLQRPNQLKVITPGDGPANEFYYDGQTITAYSPAENLVA 119 Query: 102 LNGDYIV---------DSLPSLIYTDFKRLSPYYD--------FISVGRTRIADRLCEVI 144 + DS +S Y VG++ + I Sbjct: 120 VADAPATLDAALKLAYDSAAIYFPFTDVIVSNPYQDIREGLQIAFVVGQSSVVGGTTTDI 179 Query: 145 RVVARDGTRYSYIVWMDTESKLP--MRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLA 202 VA D +W+ E KLP +R D Q + ++ +S+ T + Sbjct: 180 VAVANDTI--FAQIWIGAEDKLPRMIRAVYRDDPSRLRHQVEFSDWQLDIPVSAGDFTSS 237 Query: 203 KANLPPLLSVPVGEKAK 219 +A + E Sbjct: 238 EAKKATTIPFAPPEPPN 254 >UniRef50_A3PA11 Putative uncharacterized protein n=36 Tax=pseudomallei group RepID=A3PA11_BURP0 Length = 260 Score = 50.3 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 73/201 (36%), Gaps = 22/201 (10%) Query: 1 MKQLWFAMSL-VTGSLLFSANASATPASGALLQQMNLASQS--LNYELSFI---SINKQG 54 M++L+ ++ A+A P ALL Q + A ++ ++ L+ + Sbjct: 1 MRRLFRQWWAGLSFCAAALAHAQTAPDPQALLAQ-SDAIRTPAKSFVLTATLTEYRAGKQ 59 Query: 55 VES---LRYRHARLDNRPLAQLLQMDGPRRE----VVQRGNEISYFEPGLEP-FTLNGDY 106 V+ Y L++ P R+ +++ GN++ +++P + ++ D Sbjct: 60 VDGNTLSIYSKPDAPGGAFRTLVRFVAPARDTGKLMLKNGNDLWFYDPANQASIRISPDQ 119 Query: 107 IVDSLPSLIYTDFKRLSPYYDFISVGRTRIAD-----RLCEVIRVV--ARDGTRYSYIVW 159 + + L+ Y G + D R C + + A D T + +W Sbjct: 120 RLLGQAANGDVVTVNLAHDYRAALKGAEDVMDGDRQTRHCYKLSLTGNAPDLTYHRIEMW 179 Query: 160 MDTESKLPMRVDLLDRDGETL 180 +D + P++ L Sbjct: 180 LDASNSRPVKAKFYSESDRLL 200 >UniRef50_C1SMG9 Putative uncharacterized protein n=1 Tax=Denitrovibrio acetiphilus DSM 12809 RepID=C1SMG9_9BACT Length = 253 Score = 50.3 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 22/137 (16%), Positives = 49/137 (35%), Gaps = 7/137 (5%) Query: 82 EVVQRGNEISYFEPGLEPFT-LNGDYIVDSLPSLIYTDFKRLSPYYD---FISVGRTRIA 137 E ++R +++ + P ++G + + + D +GR A Sbjct: 92 EDIEREDDMWMYLPAESLVRRISGGGKKGAFMRSDFANEDIQKREVDDDVHKLLGRKDFA 151 Query: 138 DRLCEVIRVVA--RDGTRYSYIV-WMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDI 194 C V+ ++ T YS V W+ E ++ + D+ G L++ F I Sbjct: 152 GVSCYVVESEPVKKNDTSYSRRVVWVHPEIFQQLKTEYYDKGGRLLKEATYGGFETISGI 211 Query: 195 SSSMQTLAKANLPPLLS 211 ++ + L + + Sbjct: 212 TTYTKVLMETPREETQT 228 >UniRef50_D0MFS0 Putative uncharacterized protein n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MFS0_RHOM4 Length = 264 Score = 50.3 bits (119), Expect = 9e-05, Method: Composition-based stats. Identities = 31/200 (15%), Positives = 65/200 (32%), Gaps = 18/200 (9%) Query: 5 WFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELS--FISINKQGVESLRYRH 62 W + L+ + A A AL++ A + + + R Sbjct: 20 WLFLWLLAAVAVRPAPAQEV-DPVALVRAAEEAIKGKTSHAVLEMTVVTPDYRRTRRL-E 77 Query: 63 ARLDNRPLAQLLQMDGPRRE----VVQRGNEISYFEPGLEP-FTLNGDYIVDSLPSLIYT 117 A + A ++ ++ P RE ++RGNE+ + E + ++ S +T Sbjct: 78 AWWEGNEKALIVTLE-PPREAGNRTLKRGNELWMYLRETETTIKIPPSMMLQSWMGSDFT 136 Query: 118 DFKRLSPY-----YDFISVGRTRIADRLCEVIRVVARDGTRYSY---IVWMDTESKLPMR 169 + Y + + C V+ +V + + + W+ +LP R Sbjct: 137 YDDLVRESNPVRDYHIRLLRTDTLDGVPCYVLELVPKPEAAVVWGKLLYWIRRPDRLPAR 196 Query: 170 VDLLDRDGETLEQFRVIAFN 189 ++ GE + F Sbjct: 197 IEYYSEQGERVRTFTFHDVR 216 >UniRef50_O28352 Putative uncharacterized protein n=1 Tax=Archaeoglobus fulgidus RepID=O28352_ARCFU Length = 206 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 33/211 (15%), Positives = 72/211 (34%), Gaps = 26/211 (12%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSL-NYELSFISINKQGVESLR 59 MK++W + +L+F + TP + +L ++ + +Y+ ++ V Sbjct: 9 MKRVW----PLIAALVFLSACIQTPTAEEILTKLYERYEEAESYKAKIQEVSDNHVS--- 61 Query: 60 YRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDF 119 Y + ++ + V G + TLN Y F Sbjct: 62 YINVAFKKPDRMRIEYLPENTVSVFNGSAVKICSGNGSKTITLNRVV------DFYYGHF 115 Query: 120 KRLSPYYDFISVGRTRI----ADRLCEVIRVVARDGTRYSY---IVWMDTESKLPMRVDL 172 + Y+ VG ++ + C V + A+DG + VW+ P ++ L Sbjct: 116 LEMLKSYEVTLVGEEKVVVNNESKECYV--LAAKDGGKGEVEIEKVWVVKGEWYPAKIQL 173 Query: 173 L--DRDGETLEQFRVIAFNVNQDISSSMQTL 201 + T+ ++ ++ +S S+ Sbjct: 174 RVSFPENNTV-TLHFVSMELDATLSDSLFEP 203 >UniRef50_Q26CG2 Putative uncharacterized protein n=1 Tax=Flavobacteria bacterium BBFL7 RepID=Q26CG2_9BACT Length = 212 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 27/216 (12%), Positives = 67/216 (31%), Gaps = 23/216 (10%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYE-LSFISINKQGVESLR 59 MK+++ + L S+ + + + LL+++ A++ +YE + F + Sbjct: 1 MKKIFILLLLSVASIS----NAQSSKADQLLKEV--ATKFKSYENVVFTYKGNLQNSKSQ 54 Query: 60 YRHARLDNRPLAQLLQMDGPRREV-------VQRGNEISYFEPGLEPFTLNGDYIVDSLP 112 + G V V G+++ E T++ + Sbjct: 55 LNMDVQGEA------TLSGDNYNVEFLGSTYVFNGDKLYVINREDEQVTISTQSDNEDGL 108 Query: 113 SLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVA-RDGTRYSYIVW-MDTESKLPMRV 170 Y + R + I++ + + Y ++ +D +K Sbjct: 109 ISPTNILTFYEKGYRAEWDIEQNVRGRKIQYIKLTPIKSDSEYKQVLLGIDINTKHIYNA 168 Query: 171 DLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANL 206 + + G F +++ NQ +S + Sbjct: 169 IVTEVSGTKA-TFTLLSLKTNQPLSKKCFYFDSKDY 203 >UniRef50_C0BN55 Putative uncharacterized protein n=1 Tax=Flavobacteria bacterium MS024-3C RepID=C0BN55_9BACT Length = 210 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 26/212 (12%), Positives = 74/212 (34%), Gaps = 18/212 (8%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNL---ASQSLNYELSFISINKQGVES 57 M +++ + + + A + AS LL++++ A ++++ + ++ N + + Sbjct: 1 MNKIFLLL------ISICSFAWSQDASKVLLKEVSDKLLAQENISLQFNYTLFNAEANIN 54 Query: 58 LRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYT 117 + + + P E T+ + S + Sbjct: 55 QETSGKVQLKGEKYRFEYL---GIIQLNDTKNTYTIVPENEEVTIVSNENAGS--EMNPA 109 Query: 118 D-FKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTR-YSYIVW-MDTESKLPMRVDLLD 174 + Y F I +R + I++V D + +YI+ +D + K +V Sbjct: 110 KILNFYNEGYRFQWDIAQNIGNRKIQYIKLVPIDSSSDIAYILLGIDNQKKEVYKVIETG 169 Query: 175 RDGETLEQFRVIAFNVNQDISSSMQTLAKANL 206 ++G + + N +++ ++ + + Sbjct: 170 KNGT-QTTITITKYETNTNLAPNLFSFEEKKY 200 >UniRef50_Q15XA3 Putative uncharacterized protein n=1 Tax=Pseudoalteromonas atlantica T6c RepID=Q15XA3_PSEA6 Length = 290 Score = 50.0 bits (118), Expect = 1e-04, Method: Composition-based stats. Identities = 35/258 (13%), Positives = 77/258 (29%), Gaps = 33/258 (12%) Query: 1 MKQLW--FAMSLVTGSLLFSANASATPASGALLQ----QMNLASQSLNYELSFISINKQ- 53 M +++ F + SA A+ ++ L + ++ N + + Sbjct: 19 MSRIFMCFWGCCLLAMHAVSAQANTQLSALELANNVVARAANDGRAGNMHFTLHNDAGGV 78 Query: 54 GVESLRYRHARLDNRPL--------AQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGD 105 S + H+ A L + V +E + P + Sbjct: 79 RKRSALFVHSVDQGDTKMGIYFTAPAALQNTGFLSYDKVSGSDENWLYLPATDRVRKLPA 138 Query: 106 YIVDSLPSLIYTDFKRLSPYY-------DFISVGRTRIADRLCEVIRVVARDGTRY---- 154 + + + + DF + I + V++ + + Sbjct: 139 SSKGNYFMGTDLTYGDIKDNFKFTLTDWDFTVGEKQVIEQKEYYVLKGTTKTTAKKVELG 198 Query: 155 --SYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFN-VNQDISSSMQTLAKANLPPLLS 211 S+I +D E+ P+++D D DG L+ V + ++ T+ A L Sbjct: 199 YSSFIALIDPETYFPLKIDYTDTDGLPLKTISVKRLERIADAWVATNFTVMNAQLAHRTD 258 Query: 212 VPVGEKAKFSWTPTWLPQ 229 V + + LP+ Sbjct: 259 VVLSDVK----HIPDLPE 272 >UniRef50_Q2JI91 Putative uncharacterized protein n=2 Tax=Synechococcus RepID=Q2JI91_SYNJB Length = 411 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 32/178 (17%), Positives = 66/178 (37%), Gaps = 27/178 (15%) Query: 11 VTGSLLFSANASATPASGALLQQMNLASQSLN------Y-ELSFISINKQGVESLRYRHA 63 S+ AS A L++ N A + L Y + + ++ +L + Sbjct: 40 AVAQSAPSSLASPKQDPQAWLERYNAALEQLPPLPNLQYRQQVRVEGSQTFTATLDVLYR 99 Query: 64 RLDN-----RPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSL---I 115 R + ++ +D + EVV + + + + +++ LPS+ + Sbjct: 100 RDGSWQAWVAEGDRIRLLDSRQLEVVNQSDLL-------QLYSVYVSRPEALLPSVSFYL 152 Query: 116 YTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLL 173 D R Y +S R +A + +R+ + +W+D +S LP +V L Sbjct: 153 KADPSR----YRVLSSERVDLAGSPVQHLRLEPIQEGQLR-ELWLDPQSGLPRQVLLF 205 >UniRef50_Q1DC93 Outer membrane lipoprotein carrier protein LolA n=2 Tax=Cystobacterineae RepID=Q1DC93_MYXXD Length = 219 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 16/174 (9%), Positives = 51/174 (29%), Gaps = 23/174 (13%) Query: 39 QSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLE 98 ++ E + + + + R V GN++ ++P + Sbjct: 57 RTQTSEGTVTYKKPGLM----------------RWEYLKPSPRTFVLAGNKVYAYDPAAQ 100 Query: 99 PFTLNGDYIVDSLPSL-IYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVA-RDGTRYSY 156 T+ S+ +L+ ++ ++ + ++ R+ Sbjct: 101 SLTVANVDTSQLSASVTFLFGQGKLADEFNITKGACKDCKG---TLLVLDPLKNEPRFRQ 157 Query: 157 -IVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPL 209 + +D + ++ ++D DG + N + + L + + Sbjct: 158 VRLEVDPSTAQVLKSTVVDPDGSE-NTISFLNLKTNVGLDADSFKLDVPDDTRV 210 >UniRef50_D2RYN2 Outer membrane lipoprotein-sorting protein-like protein n=1 Tax=Haloterrigena turkmenica DSM 5511 RepID=D2RYN2_9EURY Length = 262 Score = 49.6 bits (117), Expect = 1e-04, Method: Composition-based stats. Identities = 38/253 (15%), Positives = 77/253 (30%), Gaps = 44/253 (17%) Query: 5 WFAMSLVTGSLLFSANASATPASGALLQQM---NLASQSLNYELSFISI--NKQGVESLR 59 F + L +G + + + P A+ + + + ++ E++ N E+LR Sbjct: 12 VFVIVLTSGCVAVAPPTNE-PEPEAVFESAFVHSEDLEDVSGEVTVTVNGSNGTSTETLR 70 Query: 60 YRHARLDNRPLAQLLQMDGPRR---EVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIY 116 + L P R + V + +++P E ++ Sbjct: 71 VAERPYVDYRDEVLES-SVPSRVGQQYVSNASTTWWYDPQSEMAQRFEPNESFDSDAVRS 129 Query: 117 TDFKRLSPY---YDFISVGRTRIADRLCEVIRVVAR------------DGTRYSY----- 156 + + YD G IADR V+ V A+ T + Y Sbjct: 130 DRAEMANESLQQYDLEYQGTEEIADREAHVLAVEAKAEEVERGISLLVGDTEFVYALETD 189 Query: 157 -----------IVWMDTESKLPMRVDLL--DRDGETLEQ-FRVIAFNVNQDISSSMQTLA 202 +W+D E P++ L+ +GE E + + N+ + T Sbjct: 190 EVPEEPTIVEQQIWVDAEYDYPLKERLVYEGSNGERHEMVYEFETVSFNEGLDDETFTFE 249 Query: 203 KANLPPLLSVPVG 215 + + Sbjct: 250 PPEGTVVQDLSSE 262 >UniRef50_Q1IS82 Putative uncharacterized protein n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IS82_ACIBL Length = 250 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 25/180 (13%), Positives = 55/180 (30%), Gaps = 36/180 (20%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVES--- 57 M + L+T + +A P ++ +M A N++ ++ + + Sbjct: 4 MIRASILTMLLTAVGMAQTSA---PDVNTVVSRMQTAMGGRNHDRAYSVTREYRLVPEDP 60 Query: 58 ---LRYR---HARLDNRPLAQLLQMDGPRREVVQR--GNEISYFEPGLEPFTLNGDYIVD 109 R +A + ++ + G VV++ +E Sbjct: 61 NKASRVVAEVNALPSGKKDYRITEGGGQAENVVRKVLDHETEVTNQNNGAVLT------- 113 Query: 110 SLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTR--YSYIVWMDTESKLP 167 + YDF+ G I C V+++ + + W+D +S L Sbjct: 114 -------------ADNYDFVLAGTEAIDGHRCYVLQLKPKRDGKDILRGRAWVDADSYLV 160 >UniRef50_A1WMB7 Putative uncharacterized protein n=1 Tax=Verminephrobacter eiseniae EF01-2 RepID=A1WMB7_VEREI Length = 317 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 34/224 (15%), Positives = 72/224 (32%), Gaps = 16/224 (7%) Query: 2 KQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVES---- 57 ++ W A + + ++A A P + LL Q + A S + F+ + Sbjct: 7 RRYWLATGVGGMVAGWPSSAPAAPDAQTLLAQSDRARGSGMPGVVFLVHVRNEKSPGEVE 66 Query: 58 ------LRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPG-LEPFTLNGDYIVDS 110 +R + AR + + + ++Q + + P +P + + Sbjct: 67 EDAEVLMRVKAARDGSSTAEIIEPLRTKGLRLLQVQRNMWIYRPTMKKPVAIPPRQRLSG 126 Query: 111 LPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVA-RDGTRYSYIV-WMDTESKLPM 168 SL + Y + R V+ + A T Y I+ W+ + + Sbjct: 127 QASLGDIASTGYARDYVATYLRRDSYKGETSHVLELTAGSTNTTYDRIIYWVSERTGHGI 186 Query: 169 RVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSV 212 R D L G+ + F Q +S + + + + Sbjct: 187 RADFLSVSGKP---AKYADFRYEQKVSYEDRVIPFMSHMVIHDA 227 >UniRef50_B4CUK7 Putative uncharacterized protein n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CUK7_9BACT Length = 264 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 33/201 (16%), Positives = 62/201 (30%), Gaps = 26/201 (12%) Query: 5 WFAMSLVTGSLLFSANASATPASGALLQQMNL--ASQS--LNYELSFISINKQGVESLR- 59 SLV + A A+ A + Q + A + +Y + I E+L+ Sbjct: 6 LIFASLVAMVMAVPALAAENAAPVSASQLASQLSALRQDGSSYVRLRMEIKGGKAETLQL 65 Query: 60 -YRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNG-------DYIVDSL 111 + + +E ++G + + I D Sbjct: 66 QIKQRLTRGSSEVMYQVL--FPKE--RKGESVLLKRSAKGGASGASFTPPNSMRQISDLK 121 Query: 112 PSLIYTDF---KRLSPYY---DFISVGRTRIADRLCEVIRVVARDGTRYSY---IVWMDT 162 L +D + +Y VG + C+V+ G R SY W+D Sbjct: 122 EPLFGSDLSYEDVIDNFYGWPQQAIVGTEEVEGVNCQVLESKPGKGDRSSYGSVKSWVDM 181 Query: 163 ESKLPMRVDLLDRDGETLEQF 183 +P+RV+ G+ + + Sbjct: 182 RRMVPLRVEKYSESGKLVHRI 202 >UniRef50_D2L9G4 Putative uncharacterized protein n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L9G4_9DELT Length = 270 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 21/162 (12%), Positives = 50/162 (30%), Gaps = 25/162 (15%) Query: 58 LRYRHA-------RLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVD- 109 +++ H + DG +P + +++ Sbjct: 107 MKWLHGPTKEAIYVDGANSNKVVAHSDGAGA------GLTWNLDPKGSVLRADNRHVITD 160 Query: 110 -SLPSLIYTDFKRLSPYYDFISVGRTRIA-----DRLCEVIRVV--ARDGTRY---SYIV 158 +I + + +G + +A R V V ++G Y + Sbjct: 161 IGFGFIIQMMRENIPTAIRHSELGVSDLADTVFEGRPSTVFEVTFSPKEGRTYYASRIVC 220 Query: 159 WMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQT 200 +D E +P+ + D G+ +EQ+R +N ++ + Sbjct: 221 HVDKEFLMPIGITCYDEKGDLVEQYRYKDVKINVGLTDQDFS 262 >UniRef50_C7NRE8 Putative uncharacterized protein n=1 Tax=Halorhabdus utahensis DSM 12940 RepID=C7NRE8_HALUD Length = 393 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 37/259 (14%), Positives = 75/259 (28%), Gaps = 44/259 (16%) Query: 5 WFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLN-YEL---SFISINKQGVESLRY 60 FA+ L+ S+ SA + SL+ + + ++ + + L Sbjct: 14 AFAVLLIGSSVAVGVWVSADSGGPDFAVSVTERYDSLDGFTADKETVVNRDNRTSRFLDR 73 Query: 61 RHARLDNRPLAQLLQMDGP-RREV-VQRGNEISYF-EPGLEPFTLNGDYIVDSLPSLIYT 117 + R DGP RE+ V G + + E ++G +LPS + Sbjct: 74 VYRRPGTGQYRFEDVTDGPTGREIQVSNGTTLWIYTHGSAEAKRIDGVNTSRALPSRLDR 133 Query: 118 DFKRLSP------------------------------YYDFISVGRTRIADRLCEVIRVV 147 F + G + R V+ + Sbjct: 134 LFAIIERGAAEDGGEAHDIDPLPFVPESSDQTAGIAGSMTVSYDGTATVDGRSAYVLHLE 193 Query: 148 ARDGTR-----YSYIVWMDTESKLPMRVDL-LDRDGETL-EQFRVIAFNVNQDISSSMQT 200 + T + +W+DTE +P++ RDG+ + N +S+ Sbjct: 194 SNTSTAGVVADFQQTLWIDTEWYVPIKRTTEYVRDGDPVSITTTYRNVTFNPGLSAETFR 253 Query: 201 LAKANLPPLLSVPVGEKAK 219 ++ + + Sbjct: 254 FDPPPNVTVVDADSARQQE 272 >UniRef50_B5YD52 Putative uncharacterized protein n=2 Tax=Dictyoglomus RepID=B5YD52_DICT6 Length = 224 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 34/227 (14%), Positives = 79/227 (34%), Gaps = 29/227 (12%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPA----SGALLQQMNLASQSL-NYELSF-ISINKQG 54 M+++ F ++ + + + P+ +LQ+ + ++L + + Sbjct: 1 MRKIRFIKYIILLLFVLTLLGTNKPSFAISYEEILQKTISSYKNLKTFSCILEVYNKAGN 60 Query: 55 VE---SLRYRHARLDNRPLAQLLQMDGPRREVVQRGNE------ISYFEPGL----EPFT 101 E + Y + D L + D V Q G + F P +P Sbjct: 61 NEENITYEYYFQKPDKIRLEIMEGKDKGTIIVYQNGRVRYKKGGVLSFIPLSLNVDDPIV 120 Query: 102 LNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRV-VARDGTRYSY---I 157 L+ + L + Y+ S+ I C VI + +RD Y+Y Sbjct: 121 LSIRR--GRVNELSLEYIVDILTKYNPQSIKEVNILGYSCYVIEIGDSRDRL-YNYSLQR 177 Query: 158 VWMDTESKLPMRVDLL---DRDGETLEQFRVIAFNVNQDISSSMQTL 201 ++++ + +P++++ + E + + F +N I + + Sbjct: 178 IYIEKNNFIPIQLEQYENTNGQNELVHRRVYKNFKINPPIDEKIFNI 224 >UniRef50_A9AXZ0 Putative uncharacterized protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9AXZ0_HERA2 Length = 292 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 26/79 (32%), Gaps = 3/79 (3%) Query: 127 DFISVGRTRIADRLCEVIRVV---ARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQF 183 +VG+ R VI V D W+D E + ++ + + +G+ + Sbjct: 205 QLSTVGQESFLGRDALVIECVIGGDSDQANTRLKFWIDDELFVVLKSEYYETNGDLFVES 264 Query: 184 RVIAFNVNQDISSSMQTLA 202 F VN + Sbjct: 265 AYTEFEVNGSYPADFFAPP 283 >UniRef50_A2WC86 Outer membrane lipoprotein-sorting protein n=19 Tax=Betaproteobacteria RepID=A2WC86_9BURK Length = 196 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 17/116 (14%), Positives = 32/116 (27%), Gaps = 6/116 (5%) Query: 92 YFEPGLEPFTLNGDYIVDSLP-SLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARD 150 P + VD + + L ++ G + R + V Sbjct: 81 TLSPTNPLVRDRSGHRVDRSDVGELLRNVHALQQGGATVTEGEETVGGRTALRVSVTGAP 140 Query: 151 ----GTRYSYIVWMDTESKLPMRVDLLDRDG-ETLEQFRVIAFNVNQDISSSMQTL 201 + Y +W+D E P++V D E LE + ++ Sbjct: 141 AHAIDGVHRYRLWLDAEDGFPLKVVSFSDDNDEPLETVTLDDIEIDVTFPERFFAP 196 >UniRef50_Q6MIJ7 Putative uncharacterized protein n=1 Tax=Bdellovibrio bacteriovorus RepID=Q6MIJ7_BDEBA Length = 231 Score = 49.2 bits (116), Expect = 2e-04, Method: Composition-based stats. Identities = 28/187 (14%), Positives = 63/187 (33%), Gaps = 12/187 (6%) Query: 9 SLVTGSLLFSANASATPASGALLQQMNLASQS--LNYELSFISINKQGVESLRYRHARLD 66 L SLLFS +A A +++ ++ +YE+ + + D Sbjct: 4 LLAISSLLFSLHALA-ENPAEWVKK-ADNIRNPAESYEMKIKVETSENTSVFQVYLKGQD 61 Query: 67 NRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPY- 125 + R ++ + + + P L+ ++ + D R Y Sbjct: 62 KTLIVTKEPARDKGRNMLMLDRDFNAYVPNLKR-SMRLSLAQKLSGQVANGDISRTRWYG 120 Query: 126 -YDFISVGRTRIADRLCEVIRVVARDGTRYSY-IVWMDTESKLPMRVDLLDRDGE-TLEQ 182 YD +++ +D Y++ +W+ S P+R + L +G+ L++ Sbjct: 121 DYDVTKESENT---NEVQLLLKGNKDNLTYAWVRLWLKKGSFAPLRAEYLGLNGKTVLKR 177 Query: 183 FRVIAFN 189 + Sbjct: 178 AAFEDYK 184 >UniRef50_Q3A8J7 Putative outer membrane lipoprotein-sorting protein n=1 Tax=Pelobacter carbinolicus DSM 2380 RepID=Q3A8J7_PELCD Length = 243 Score = 48.8 bits (115), Expect = 2e-04, Method: Composition-based stats. Identities = 31/239 (12%), Positives = 66/239 (27%), Gaps = 32/239 (13%) Query: 8 MSLVTGSLLFSANASATPASGALLQQMNLASQS-----------LNYELSFISINK---- 52 + + LL + A A A L+ + A Q+ +++ F Sbjct: 2 LHVFCLLLLAAWVCPAVHAESARLETVTAALQAPFQNQTKHNRIRDFQADFTQEAYLGSL 61 Query: 53 QGVESLR---YRHARLDNRPLA--QLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYI 107 V++ A + + + +V G+ + + P + Sbjct: 62 DQVQTASGRVIVRLAPCQGSSAWFRWEYLLPDPQLIVSDGSTVWVYMPENRQVMESPMPA 121 Query: 108 VDSL----PSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVW---- 159 P TD L+ + G R + + + + Y + Sbjct: 122 EGKAGTDNPLAFLTDLGNLNRQFAVTW-GEPRQSPEGHYRLLLRPLQPSAYLEQLLLEVD 180 Query: 160 ---MDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVG 215 +D ++ P+R L G R +NQ+ ++ +L G Sbjct: 181 KAVVDGQTGYPLRAATLFGSGGNRTTIRFSTPLLNQNPERALFHFTPPAGTEVLRPEQG 239 >UniRef50_C4LE40 Putative uncharacterized protein n=5 Tax=Proteobacteria RepID=C4LE40_TOLAT Length = 245 Score = 48.4 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 27/199 (13%), Positives = 65/199 (32%), Gaps = 18/199 (9%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYEL--SFISINKQGVESL 58 M+ L + +++ L +A A +LQ+++ + +YE I+I Sbjct: 1 MRLLHYILTVCLFLLPTAAMA---LDGKEILQKVDRNLEPESYESYRKLINIEPDASRKE 57 Query: 59 RYRHARLDNRPLAQLLQMDGP---RREVVQRGNEISYFEPG-LEPFTLNGDYIVDSLPSL 114 ++ R L + R +++G + + P +P + V Sbjct: 58 FVIYSVKSGRDKIVTLFLSPASDKGRTTLRQGENMWLYIPNVGKPIRITSLQSVTG-GVF 116 Query: 115 IYTDFKRLS--PYYDFISVGRTRIADRLCEVIRVVARDGTRY--SYIVWMDTESKLPMRV 170 D R+ YD ++ ++ + A++ + + +D LP + Sbjct: 117 NNADIMRVDYTEEYDVATLSEQ---G-DTYLLTLKAKNTSVAYDQLKMTVDKALLLPREI 172 Query: 171 DLLDRDGETLEQFRVIAFN 189 + G ++ Sbjct: 173 EAYASSGMLIKTLHFKDLK 191 >UniRef50_A9EA99 Putative uncharacterized protein n=1 Tax=Kordia algicida OT-1 RepID=A9EA99_9FLAO Length = 302 Score = 48.4 bits (114), Expect = 3e-04, Method: Composition-based stats. Identities = 22/111 (19%), Positives = 43/111 (38%), Gaps = 12/111 (10%) Query: 85 QRGNEISYFEPG-LEPFTLNGDYIVDSLPSLIYTDFK------RLSPYYDFISVGRTRIA 137 Q N+ + P + + S+ T+F R + Y + +G + Sbjct: 116 QDDNDFWLYLPALGKVKRIASSNEGGETGSVFGTEFSIEDVSPRKTKDYTYKLLGENTLN 175 Query: 138 DRLCEVIRVVARD----GTRYSYIV-WMDTESKLPMRVDLLDRDGETLEQF 183 DR +I + T YS ++ ++D E + ++ +L DR G +Q Sbjct: 176 DRPVWIIESTPTETRSKKTYYSKVISYVDKERYVILKDELYDRVGTLFKQL 226 >UniRef50_Q04R19 Outer membrane lipoprotein-sorting protein n=7 Tax=Leptospira RepID=Q04R19_LEPBJ Length = 236 Score = 48.4 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 32/238 (13%), Positives = 74/238 (31%), Gaps = 22/238 (9%) Query: 1 MKQ-LWFAMSLVTGSLLFSANASATP---ASGALLQQMNLASQSLN-YELSFISINKQGV 55 MK+ + + ++ L A + +++Q+ L+ Y+ +F Sbjct: 1 MKKTIILSFYILFLVLEPDFLAQPAHNWNSPSEVVKQVKKKFNDLSSYKANFQIQTVSNK 60 Query: 56 ES--LRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEP-----GLEPFTLNGDYIV 108 +S +R + + D E+V G + + G + TLN Sbjct: 61 KSKNMRGVCLYKKGGRI-RYQFSDPSGDEIVSDGKTLYIYIARLNAVGKQDLTLNKSNKS 119 Query: 109 DS-LPSLIYTDFKRLSPYYDFISVGRTR-----IADRLCEVIRVVARD--GTRYSYIVWM 160 S R+ Y + + R V+ + R+ G + ++++ Sbjct: 120 GPIFSSFTDEGLSRIFRKYHYKFDSIEQPQTSSKDGRKYFVLNLEQREKIGGFETMLLYV 179 Query: 161 DTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKA 218 D E+ + D G+ +N D+ +++ P+ + Sbjct: 180 DAETYFIQKAVASDGRGKE-TTVEFSNLEINPDLEDGQFNFHIGGNAKIINNPLVSEQ 236 >UniRef50_Q5V481 Putative uncharacterized protein n=1 Tax=Haloarcula marismortui RepID=Q5V481_HALMA Length = 339 Score = 48.4 bits (114), Expect = 4e-04, Method: Composition-based stats. Identities = 36/273 (13%), Positives = 80/273 (29%), Gaps = 26/273 (9%) Query: 2 KQLWFAMSLVTGSLLFSANASA--------TPASGALLQQMNL---ASQSLNYELSFISI 50 ++L VT LL + P+ +L + A++++ Sbjct: 7 RRLAIVAVFVTIGLLAVGAVAGVSGFEQMGQPSGDDVLDETEQRYDAAETITGTAIVTVT 66 Query: 51 NKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDS 110 N ++ +A + + + E+ G + + V Sbjct: 67 NDSESKTATVEYAAAEPNKTWAAVTSENRSYEMGTNGTVVWAVGENQSYARELTEESVAM 126 Query: 111 LPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGT--RYSYIVWMDTESKLPM 168 + G + V+ + + + + +W+DTE Sbjct: 127 NGTTDPVP----EENVTATLRGTEEVNGESTYVLDLEPTNESIDAPNTTLWVDTEDYRVH 182 Query: 169 RVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLP 228 ++ D T FNV+ D S + + + + + A+ + LP Sbjct: 183 KMTTDDGTNRTELTVEETNFNVSIDDSQFAPPADRVAVTTVETYDSYDAAQSATDLD-LP 241 Query: 229 Q---G-FSEVSSSRRPLPTMDNMPIESRLYSDG 257 + G F E RP ++ + + +DG Sbjct: 242 EYENGTFEEARYISRP----ESTAVAQQYDTDG 270 >UniRef50_A2U292 Putative uncharacterized protein n=2 Tax=Polaribacter RepID=A2U292_9FLAO Length = 224 Score = 48.0 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 24/216 (11%), Positives = 65/216 (30%), Gaps = 16/216 (7%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLN-----YELSFISINKQGV 55 M++ + ++ + + + + ALL +++ + N + + + Sbjct: 7 MRK--LVVLFLSLFITSVTLSQNSLEAKALLDEVSTKMSAYNNMFIGFSQTLSNEEAGIE 64 Query: 56 ESLR--YRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPS 113 E R LL + + G ++ + + + + Sbjct: 65 EGDEPPIRGEINLKGEKYSLLYL---GNRFIYDGKKLYVINNEEKEISTSEGDMNADDGF 121 Query: 114 LIYTDF-KRLSPYYDFISVGRTRIADRLCEVIRVVARDGTR--YSYIVWMDTESKLPMRV 170 + + Y+F + R + + + D + +D ++K ++ Sbjct: 122 IYPSKLLSFYKEGYNFEMGKLKNVNGRKIQYVTLNPIDSDSDIVKVELGIDAKTKHIYKL 181 Query: 171 DLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANL 206 +G F + +F NQ IS S + Sbjct: 182 IQTGSNG-AKTSFTITSFKSNQPISDSFFKFDEQKY 216 >UniRef50_D1BIU8 Putative uncharacterized protein n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BIU8_SANKS Length = 396 Score = 48.0 bits (113), Expect = 4e-04, Method: Composition-based stats. Identities = 26/194 (13%), Positives = 54/194 (27%), Gaps = 30/194 (15%) Query: 53 QGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFE------------PGLEPF 100 G ++R + D + + LL D VV G + P + Sbjct: 75 GGSSTVRVW-SDGDGKARSSLLG-DLSEYTVVTDGGSAWTYSSSDDEAVHYAVAPEDQAA 132 Query: 101 TLN--------GDYIVDSLP---SLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVAR 149 +V LP ++ + + T++A R + + Sbjct: 133 LDELKASAEELDPAVVGDLPTPQAVAEQALAYADETSEVTVLPATQVAGRDAYQLELSPD 192 Query: 150 DG--TRYSYIVWMDTESKLPMRVDLLDRDG--ETLEQFRVIAFNVN-QDISSSMQTLAKA 204 +V +D E+ +P+R + + + + D + T Sbjct: 193 SDATLVDRVLVAVDAETSVPLRAQVWSTQDPVTPAVEIAFTDISYDTVDPTVFDFTPPPG 252 Query: 205 NLPPLLSVPVGEKA 218 + VP+ E Sbjct: 253 ATTRDVVVPLPETT 266 >UniRef50_Q47GZ2 Putative uncharacterized protein n=1 Tax=Dechloromonas aromatica RCB RepID=Q47GZ2_DECAR Length = 290 Score = 48.0 bits (113), Expect = 5e-04, Method: Composition-based stats. Identities = 36/246 (14%), Positives = 70/246 (28%), Gaps = 33/246 (13%) Query: 11 VTGSLLFSANASATPASGALLQQMNLASQ----------SLNYELSFISINKQGVESLRY 60 ++ + ++ + P + ALLQ+ A S+ Y + V+ Sbjct: 21 MSPGIPQASGSGEQPVARALLQKSADAHGLAAFRQIDDLSVGYAGEW-YGLVSKVQPTLI 79 Query: 61 RHARLDNRPLAQLLQMDGP-----------RREVVQRGNEISYFEPG----LEPFTLNGD 105 +++ DGP ++V++R ++ F Sbjct: 80 DADFRQGSQ-ERIIFKDGPVIAQRHLGPKGNKQVIRRTGDVQVFYNDVATTDREVLAAAA 138 Query: 106 YIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGT----RYSYIVWMD 161 + D + F L + R C + V R G Y +++D Sbjct: 139 LVADGYRMFLTGPFYFLDGNLSLEVGEDETVEGRPCTTLVAVRRPGHGQSAEDRYQLFID 198 Query: 162 TESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFS 221 TE+ L +R +G Q + + + T L P+ Sbjct: 199 TENHL-LRRVRFTMEGLESTQGAIAEVDFFDHKEIAGVTWPTRFYERLRK-PIPSLPVHD 256 Query: 222 WTPTWL 227 W L Sbjct: 257 WRLIGL 262 >UniRef50_C0ZK20 Putative uncharacterized protein ydcC n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZK20_BREBN Length = 345 Score = 47.6 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 50/352 (14%), Positives = 113/352 (32%), Gaps = 41/352 (11%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLAS-QSLNYELSFISINKQGVESL- 58 MK++ + L+ LF ++ +N A + Y+ + + G + Sbjct: 1 MKRVALPLVLLLVFTLFLGGCFGQKTPEDVVSDLNGALGKMTGYKSQAVLTMQTGSTPME 60 Query: 59 ---RYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPG-LEPFTLNGDYIVDSLPSL 114 + + + N +A + G + +++ + P + F + ++ P Sbjct: 61 YDVQVWYEKPTNYRVALTSKQRGITQIILRNNEGVFVLTPHLNKSFRFQSGWPENNGPLY 120 Query: 115 IYTDFKR-LSPYYDFISVGRTRIADRLCEVIRVVAR-DGTR--YSYIVWMDTESKLPMRV 170 +Y + + + + V V A G R +W+ + K P Sbjct: 121 LYETLAKSIIDDTERQMKMEEK-----QYVFEVKANYSGNRSLTKQKIWLTEDFK-PTHA 174 Query: 171 DLLDRDGETLEQFRVIAFNVNQDISSSMQ-------TLAKANLPPLLSVPVGEKAKFSWT 223 +++D L + F+ N T + +P + + + Sbjct: 175 EIMDASMNPLVRIDFTDFSFNPMFDKDAFDKERNMTTSSLTTIPTMAQTNGQVVKQPNSQ 234 Query: 224 P-----TWLPQGFSEVSSSRRPLPTMDNMPIESR-LYS----DGL---FSFSVNVN--RA 268 T++P+G + + + + Y+ +G S S Sbjct: 235 FGVIVPTYMPEGVKQGDIEPVTRDGERKVILTYKGTYNYKVIEGRPTAASVS-YEQGMPV 293 Query: 269 TPSSTDQM-LRTGRRT-VSTSVRDNAEITIVGELPPQTAKRIAENIKFGAAQ 318 T + +TG + T D E TI G+LP + +A++ +A+ Sbjct: 294 NLGFTVGVLAQTGENQRLLTWELDGIEYTIAGDLPEEEMVNVAQSTYGLSAK 345 >UniRef50_C6E6V2 Putative outer membrane lipoprotein-sorting protein n=2 Tax=Geobacter RepID=C6E6V2_GEOSM Length = 264 Score = 47.6 bits (112), Expect = 6e-04, Method: Composition-based stats. Identities = 30/209 (14%), Positives = 71/209 (33%), Gaps = 24/209 (11%) Query: 2 KQLWFAMSLVTGSLLFSANASATPASGALLQQMN---LASQSLNYELSFISINKQGVESL 58 K + F A A+ P++ L +++ QS++Y + S +KQ Sbjct: 5 KLILFIFCTACLHQPQMAGANEAPSAAELFKRVEGRFARLQSISYSVKRFSTSKQQAAGD 64 Query: 59 RYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPS--LIY 116 R+ + + ++ ++ R +V G + + P ++ Sbjct: 65 RWLFSFKSPDKV-RVDYLEPYSRLIVTDGASLLEYLPSARKALKTDLVSASPQKRAMVLN 123 Query: 117 TDFKRLS------PYYD-----FISVGRTRIADRLCEVIR-VVARDGTRYSYIVWMDTES 164 R+S Y + V R+ + ++ R Y+V++D E Sbjct: 124 GALGRVSVDGLRLGNYQEMLRRAVKVTPARVGENKAWLVEGANPR------YLVFIDQEK 177 Query: 165 KLPMRVDLLDRDGETLEQFRVIAFNVNQD 193 ++P++ ++ DG + + + Sbjct: 178 EVPLKTEIYGADGGLILRTEASSLYQAAP 206 >UniRef50_A0L521 Putative uncharacterized protein n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L521_MAGSM Length = 269 Score = 47.3 bits (111), Expect = 7e-04, Method: Composition-based stats. Identities = 37/250 (14%), Positives = 71/250 (28%), Gaps = 34/250 (13%) Query: 18 SANASATPASGALLQQMNLASQS------LNYELSFISINKQGVESLR-----YRHARLD 66 S A A + L+ + A + L +L + N+QG S R + D Sbjct: 24 SPQAQAETSQEKGLRLVQEADKQDFGYVDLTAQLEMVLTNRQGDSSSRKIRIKMKEVADD 83 Query: 67 NRPLAQLLQMDGP----RREVVQRGNEI-----SYFEPGLEPF-TLNGDYIVDSLPS--- 113 L D P ++ + + F P ++ + Sbjct: 84 GDM--SLSVFDTPADVKGTVMLTHSHAVKPDDQWMFLPAVKRVKRIASRNKSGPFMGSEF 141 Query: 114 LIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGT--RYSYIVWMDTESKLPMRVD 171 + Y + + I R VI VW+D P +V Sbjct: 142 AFEDLASQEVAKYTYNYLRDEVIDGRDSWVIERRPAYAYSGYTRQEVWLDKVRLQPNQVI 201 Query: 172 LLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGF 231 DR + L+ + + + +L +++ ++ SW GF Sbjct: 202 YYDRKNDLLKTQTFSGYQ------QYLGRYWRPSLMLMVNHQTHKQTTLSWLDYRFKNGF 255 Query: 232 SEVSSSRRPL 241 S+ + + Sbjct: 256 SDREFHKDGM 265 >UniRef50_Q1JW20 Outer membrane lipoprotein carrier protein LolA n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1JW20_DESAC Length = 246 Score = 47.3 bits (111), Expect = 8e-04, Method: Composition-based stats. Identities = 35/235 (14%), Positives = 81/235 (34%), Gaps = 44/235 (18%) Query: 6 FAMSLVTGSLLFSANASATPASGALLQQMNL---------ASQSLN---YELSFI----- 48 F + ++ L A ++ LL ++ A + Y+ ++I Sbjct: 4 FLLFIMLTLLCTPAFGGE-LSADQLLHRLQQRFADPHHPQAIHDFSADFYQKAYIASLGR 62 Query: 49 SINKQGVESLRYRHARLDNRPLA------QLLQMDGPRREVVQRGNEISYFEPGLEPFTL 102 + +G ++R+ DN+ A + + +++ G + + P + Sbjct: 63 TRTGRGTITMRF-----DNQDQATAKTLLRWIYEVPSNQQIYSNGTTLWVYLPENNQVMI 117 Query: 103 NG---DYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIV- 158 + + P L + RL ++ +G + + + + Y + Sbjct: 118 SQLDDSLDQSNDPMLFLRNLGRLEQFFSAELIGSPD-EQSATYRLELTPKKPSAYIQTLI 176 Query: 159 -----WM-DTE--SKLPM-RVDLLDRDGETLE-QFRVIAFNVNQDISSSMQTLAK 203 W+ D E LP+ R ++D+ G E +FR +A N + + L + Sbjct: 177 LTLPNWIADAEPPQALPLQRAAIVDQTGNQTEIEFRHVALNQAPETEQFVFELPE 231 >UniRef50_B4CZL7 Putative sigma E regulatory protein, MucB/RseB n=1 Tax=Chthoniobacter flavus Ellin428 RepID=B4CZL7_9BACT Length = 231 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 25/182 (13%), Positives = 57/182 (31%), Gaps = 28/182 (15%) Query: 22 SATPASGALLQ--QMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGP 79 P +L+ ++ + Q+ N R A + + + P Sbjct: 24 EDAPDPHVILKTVRIAQSEQNRTLNGEI--RNGGKSLPFRLVCA----GSVIRYEFTNPP 77 Query: 80 RREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYD-----------F 128 + V+ G++ + P + Y+ Sbjct: 78 QVLQVKLGDK------DARLEEVVDGKAAKVSPRRFDERVRDTDISYEDLSLCFLYWPNA 131 Query: 129 ISVGRTRIADRLCEVIRVVA--RDGTRYSYI-VWMDTESKLPMRVDLLDRDGETLEQFRV 185 G + + C +IRV R T+Y + +W+ ++ M+ + D G+ +F+V Sbjct: 132 TVQGEQTMLLQKCWIIRVQPGSRGDTQYGKVDLWISKKTGALMQAEAFDAAGKLARRFKV 191 Query: 186 IA 187 ++ Sbjct: 192 MS 193 >UniRef50_Q3IRT8 Putative uncharacterized protein n=1 Tax=Natronomonas pharaonis DSM 2160 RepID=Q3IRT8_NATPD Length = 266 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 32/233 (13%), Positives = 59/233 (25%), Gaps = 41/233 (17%) Query: 22 SATPASGALLQQ---MNLASQSLNYELSFISINKQGVES--LRYRHARLDNRPLAQLL-Q 75 + P L + + A +S+ E + I + + + A L Sbjct: 33 NEAPDPDTLWEATFVYSEALESIEGERTTIVETGNETRTRTVAVAERPYTDYRTAVLEAP 92 Query: 76 MDGPRREVVQRGNEI-SYFEPGLEP---FTLNGDYIVDSLPSLIYTDFKRLSPYYDFISV 131 + G EV + ++ P F + + + + + Sbjct: 93 LPGDEGEVYVSNATVNWWYNPTTNSADYFRPAEPFTDAEIRDARSENAEERRALVEVEYA 152 Query: 132 GRTRIADRLCEVIRVV---------------------------ARDGT-RYSYIVWMDTE 163 G IADR V+ V D VW+D E Sbjct: 153 GTETIADREAHVLDVAAANETATRGIELLVGDREFVFALDSVDPNDELLVVETRVWIDAE 212 Query: 164 SKLPMRVDLL---DRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVP 213 P++ + D D + R + N DI + + Sbjct: 213 YDYPLKEQAVFIEDDDERHVYTERFESVTFNGDIGDDAFAFEPPEDAMVTDIS 265 >UniRef50_A5FI22 Possible lipoprotein carrier protein LolA n=17 Tax=Bacteroidetes RepID=A5FI22_FLAJ1 Length = 215 Score = 46.5 bits (109), Expect = 0.001, Method: Composition-based stats. Identities = 29/223 (13%), Positives = 73/223 (32%), Gaps = 33/223 (14%) Query: 2 KQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFI------------- 48 K+ + ++ L F++ + + LL ++ + +Y+ I Sbjct: 3 KKCFQIAVILL--LSFTSIQAQDKKAKDLLNEVTTKIK--SYDNIVIDFKYSLNNAKENI 58 Query: 49 SINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIV 108 + + +G +++ ++ + G + P E T++ Sbjct: 59 NQDSKGNVTMK-------GNQY----VLNFMGVTKIFDGQKTYTIVPEDEEVTVSKVNEK 107 Query: 109 DSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVA---RDGTRYSYIVWMDTESK 165 D + Y + + R + I++V +D R ++ +D ++K Sbjct: 108 DDNAVTPSKMLTFFNSGYKYTMDIVQNVKGRKIQYIKLVPTTGKDQ-RKEILLGIDVQTK 166 Query: 166 LPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPP 208 + ++G V +F NQ +S + T + P Sbjct: 167 HIYNLIETGKNGTK-TTLTVNSFKTNQPLSKNQFTFVASKYPK 208 >UniRef50_D2RQ57 Putative uncharacterized protein n=2 Tax=Halobacteriaceae RepID=D2RQ57_9EURY Length = 382 Score = 46.1 bits (108), Expect = 0.001, Method: Composition-based stats. Identities = 37/249 (14%), Positives = 68/249 (27%), Gaps = 38/249 (15%) Query: 7 AMSLVTGSLLFSANASATPASGALLQQMNLASQSL-NYELSFISINKQGVESL-RYRHAR 64 + + +A P+S ALL+ + L + + E++ R Sbjct: 12 GAGVALAGCVSYPSADDGPSSEALLRDAIETRRGLHDLRGRRTLTVETPSETVERTERVV 71 Query: 65 LDNRPLAQLLQM-----DGPRREVVQRGNEI-SYFEPGLEPFTLNGDYIVDSLPSLIYTD 118 +L + D P V E+ + P E L + Sbjct: 72 RQPPAKQRLEVLESTDPDAPVGSVTVTNREMTWEYNPEEELVDLQ-FHGTKVDADRTLRV 130 Query: 119 FKRLSPYYDFISVGRTRIADRLCEVIRVVAR--------------------------DGT 152 + L Y G T I R VI + Sbjct: 131 LEALLEDYRLGYEGTTTIDGRDAHVIETRPPVEETGRRLNLVVGDTTYAIPLSTDDLEDL 190 Query: 153 RYSYIVWMDTESKLPMR-VDLLDRDGETLEQFRVI--AFNVNQDISSSMQTLAKANLPPL 209 S + +D E + P+R + + DGE Q V +++ + S T + Sbjct: 191 EVSRTIAIDDEYRYPVRERNEVRDDGEIRYQLTVTYEDLAIDEGVESETFTYQPPADATV 250 Query: 210 LSVPVGEKA 218 ++ + Sbjct: 251 VTDGTKPEG 259 >UniRef50_Q5UZG4 Putative uncharacterized protein n=2 Tax=Haloarcula marismortui RepID=Q5UZG4_HALMA Length = 394 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 25/153 (16%), Positives = 46/153 (30%), Gaps = 17/153 (11%) Query: 105 DYIVDSLPSLIY--TDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGT-RYSYIVWMD 161 V+ LP + + G + R VI V +D T Y +W+D Sbjct: 156 SQSVEPLPVVPRGEQRPTESARSMTVSYRGTESLDGREVYVIHVAPKDDTATYEQTIWVD 215 Query: 162 TESKLPMRVDLL-DRDG-ETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGE--- 216 TE P++ DG T+ + + + T + + + E Sbjct: 216 TEQFFPVKKRTAWTADGERTVVTTTYTDVTYDTGVPEDVFTPSFPDNTTVEVPETPERQT 275 Query: 217 -------KAKFSWTP--TWLPQGFSEVSSSRRP 240 KA +P G+ +++ Sbjct: 276 YESVGALKADTEVQVPEPDIPPGYELTYATQTR 308 >UniRef50_B7RWJ6 Putative uncharacterized protein n=1 Tax=marine gamma proteobacterium HTCC2148 RepID=B7RWJ6_9GAMM Length = 238 Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 31/213 (14%), Positives = 73/213 (34%), Gaps = 19/213 (8%) Query: 1 MKQLWFAMSLVTGSLLFSANAS-----ATPASGALLQQMNLASQSLNYELSFISINKQGV 55 +++L + + + +A + + + +S + + + GV Sbjct: 11 IQRLALPLVTLLALSTPALSAGPKISWDLDDALKQVDRQADDFKSAMARVEIVRRDLGGV 70 Query: 56 ESLRYRHAR-LDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTL----NGDYIVDS 110 E R + +D + +L R + G+ + PG + + ++ Sbjct: 71 ELSREQGTVFVDRKGRIRLDTDAPKHRSYIVEGSTLHIHYPGEKRVEVYSLSRHKSRMEP 130 Query: 111 LPSLIYTDFKR-LSPYYDFISVGRTRIADRLCEVIRVVA-RDGTRYSY---IVWMDTESK 165 L + + R L Y S+G I + + + ++ TR +W+D S Sbjct: 131 FIRLGFNNSGRDLKDDYLLTSLGERDIGESRTLGLELTPEKEKTRAVMGKAQLWIDQASW 190 Query: 166 LPM-RVDLLDRDGETLE-QFRVI--AFNVNQDI 194 +P +V GE + + + +N D+ Sbjct: 191 MPTQQVITASSQGEEITLTYTFVARNLELNPDL 223 >UniRef50_Q5WII2 Putative uncharacterized protein n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WII2_BACSK Length = 266 Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 29/207 (14%), Positives = 67/207 (32%), Gaps = 21/207 (10%) Query: 19 ANASATPASGALLQQMNLASQSL-NYELSF----ISINKQGVESLRY----RHARLDNRP 69 A A + +++++ +A + L N+ L + ++ + +E+ + + + Sbjct: 58 AETVAAITAESVIEEAIVAEKKLGNFSLEWQKHEVAEDGTVMEAYAFERLHVYRSDNGPD 117 Query: 70 L-----AQLLQMDGPRREVVQR----GNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 + + DG E ++ G + + D V D Sbjct: 118 YFFKQSENIDE-DGNGVETIETQTPEGRNVYLSTDSFAVLSEASDDHVPPFSPEPLEDLI 176 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 Y G I+ L ++ A + +W DTE+ L +R + G+ Sbjct: 177 TEQSPYALTYQGIYEISGYLAHHVQATAEERDV-EINLWFDTETGLLVRENAF-YQGKPG 234 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLP 207 + + F + D + +P Sbjct: 235 QVLILTTFEEDIDFDPELFDFPVEGVP 261 >UniRef50_Q3JE72 Outer membrane lipoprotein carrier protein LolA n=2 Tax=Nitrosococcus oceani RepID=Q3JE72_NITOC Length = 236 Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 26/211 (12%), Positives = 69/211 (32%), Gaps = 9/211 (4%) Query: 3 QLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSL--NYELSFISINKQGVESLRY 60 +L F +L+ L A + G L+ + SL ++ + Q +E + Sbjct: 27 RLGFQGALLGIILSGLAFTLSAEEPGDHLETFLQKTHSLRAEFQQILLDERNQPLEESKG 86 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIV-DSLPSLIYTDF 119 + + + +V G + +++P L T+ + P+L+ + Sbjct: 87 VFFLQRPGKF-RWDYHEPFSQTIVADGEHVWFYDPDLAQVTVKNQGLALGDTPALLLSGK 145 Query: 120 KRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGET 179 + + + ++ + + RD + + + +++L D G T Sbjct: 146 RLPAENFSISNLPSDN----HLAWVELRPRDKEAAFERLLLAFDDDGLRQMELHDSFGRT 201 Query: 180 LEQFRVIAFNVNQDISSSMQTLAKANLPPLL 210 + +N + S+ ++ Sbjct: 202 -TRLVFSKLEINLSLDPSLFVFTPPPGADVI 231 >UniRef50_C3X224 Outer-membrane lipoprotein carrier protein n=1 Tax=Oxalobacter formigenes HOxBLS RepID=C3X224_OXAFO Length = 233 Score = 45.7 bits (107), Expect = 0.002, Method: Composition-based stats. Identities = 32/221 (14%), Positives = 68/221 (30%), Gaps = 37/221 (16%) Query: 7 AMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLD 66 + L+ L A A L+ + + + F + E +R+ +A Sbjct: 35 TVLLLFLPLFAGATALDQ------LKNFSANAH--SARGEFSQAQVKSGEKVRFTNAASG 86 Query: 67 --------------NRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNG-DYIVDSL 111 +P Q+LQ DG R + ++ L T+ + S Sbjct: 87 TFLFSRPGKFIWTYKKPYEQVLQADGTR---------LYMYDKDLNQVTVKKLGDALGSS 137 Query: 112 PSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVD 171 P+ I L + + G + V+ + + + ++ +P ++ Sbjct: 138 PAAILFGSNNLEKNFMLKNAGAHN--GYE--WVEVIPKKKDTPFEKINIGMKNGIPEAME 193 Query: 172 LLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSV 212 L D G+ L + F N +++ M + Sbjct: 194 LYDSLGQ-LTLIKFTQFTKNPPVNAGMFKFVAPKGADVFEN 233 >UniRef50_A0LL73 Putative uncharacterized protein n=2 Tax=Bacteria RepID=A0LL73_SYNFM Length = 262 Score = 45.3 bits (106), Expect = 0.002, Method: Composition-based stats. Identities = 20/237 (8%), Positives = 71/237 (29%), Gaps = 14/237 (5%) Query: 4 LWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYEL----SFISINKQGVESLR 59 + ++ L + ++ +L +++ + + + ++ + + SL Sbjct: 16 ILLLALGISAGLDAYPVLAEELSARDILNKVDDLYRGTSSQGKMTMEVVTEHWKRTLSLE 75 Query: 60 YRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPF------TLNGDYIVDSLPS 113 + D + L + ++ G+++ + P + L+ ++ + Sbjct: 76 FWSRGKDRSLIRILAPLKEKGTATLRSGSDLWNYLPKVNRVIKLPSSMLSASWMGSHFTN 135 Query: 114 LIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMD---TESKLPMRV 170 R + YDF + + + + + + LP+ Sbjct: 136 DDLVKGSRFAEDYDFRISFQGMRDGQDVVELTCIPKPQAPVVWGKVEVVVRRSDYLPVAT 195 Query: 171 DLLDRDGETLEQFRVIAF-NVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTW 226 D + ++ + ++ TL + P + ++ +F + Sbjct: 196 RYYDEGLRLARTMAFTHYRELSGRLLPTVMTLVPRDKPGEKTQIAYDEIRFDVVLSD 252 >UniRef50_C1DM29 Putative uncharacterized protein n=1 Tax=Azotobacter vinelandii DJ RepID=C1DM29_AZOVD Length = 330 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 16/102 (15%), Positives = 39/102 (38%), Gaps = 3/102 (2%) Query: 80 RREVVQRGNEISYFEPG-LEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIAD 138 ++++ + + + +PG +P ++ + S + YD + + Sbjct: 167 GQKLLMLDSNMWFHKPGLSKPIPISLRQKLMGQASYGDVASTNYAEDYDATLLPDETVEG 226 Query: 139 RLCEVIRVVARDG--TRYSYIVWMDTESKLPMRVDLLDRDGE 178 C V + AR+ T + W+D E + ++ D G+ Sbjct: 227 VDCYVFDLKARNSKTTYDRIVYWVDKERLVGVKADYYTLSGK 268 >UniRef50_B9ZJT9 Outer membrane lipoprotein carrier protein LolA n=1 Tax=Thioalkalivibrio sp. K90mix RepID=B9ZJT9_9GAMM Length = 219 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 67/210 (31%), Gaps = 21/210 (10%) Query: 7 AMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELS--------FISINKQGVESL 58 A ++ + +A P + A L + ++ E + ++ G S+ Sbjct: 15 ATTMFLFAGPLAAERGPAPDARAALDRFVEGLETFTAEFTQTVRDETGYVLQESDG--SM 72 Query: 59 RYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNG-DYIVDSLPSLIYT 117 + + + +V G ++ ++P L T+ D+ P T Sbjct: 73 QL--GMPNRLRWEVTEPF---PQTIVSDGEDLWTYDPDLAQATVRPLGDAFDATPIAAIT 127 Query: 118 DFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMD-TESKLPMRVDLLDRD 176 +RL ++ + + D + ++ R+ + +D T R+ D Sbjct: 128 QPERLDEHFRMDVLP---VRDASALRLLLIPRNEQADFTHLELDLTPDGDLTRMAFRDIF 184 Query: 177 GETLEQFRVIAFNVNQDISSSMQTLAKANL 206 G+ E N + S+ T + Sbjct: 185 GQETE-IHFERSERNAPVDESVFTFDPPSG 213 >UniRef50_A4BK05 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BK05_9GAMM Length = 235 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 35/195 (17%), Positives = 69/195 (35%), Gaps = 7/195 (3%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQG--VESL 58 M++ + L+ L+ A P L M +S+ I ES+ Sbjct: 1 MRKF---IGLLFVILMLPVWADPAPELI-YLDSMRTGGESVKVTTRIIVDEPGEPTRESV 56 Query: 59 RYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTD 118 +A D R LA ++V+ ++ F P + L + L D Sbjct: 57 LDVYAHQDGRSLAVYRNDREAGQKVLMVDDQFWLFMPDSKR-ALRITPMQKLLGDASVGD 115 Query: 119 FKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGE 178 L+ D+ V RT+ DR + R + + +++E++ P+ D + G+ Sbjct: 116 VASLAWAEDYEVVERTQQDDRTLLYLNARRRGLSYQQIELTVESETQHPIEADFYLKSGK 175 Query: 179 TLEQFRVIAFNVNQD 193 +Q + + + Sbjct: 176 LAKQAKFELVETDGE 190 >UniRef50_Q024X2 Putative uncharacterized protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q024X2_SOLUE Length = 280 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 21/135 (15%), Positives = 41/135 (30%), Gaps = 31/135 (22%) Query: 62 HARLDNRPLA--QLLQMDGPR--REVVQRGNEISYFEPGLEPFTLNG--DYIVDSLPSLI 115 H ++++ + L +DG R V + G +S E E L+ + P+ Sbjct: 57 HGKVESTKREAWETLMLDGQPYRRTVERDGKPLSASEQSTEQKRLDKETRRLSAETPAEK 116 Query: 116 YTDFK--------------RLSPYYDFISVGRTRIADRLCEVIRVVARDG---------- 151 + +D G + + R V+ V R G Sbjct: 117 QRRLDDAEKSRRREFAFLSEIPDLFDLKLEGDSTVDGRPVWVVSGVPRPGAKAKSSDARM 176 Query: 152 -TRYSYIVWMDTESK 165 + +W+D + Sbjct: 177 LLKVRGRLWIDKATY 191 >UniRef50_Q028U0 Putative uncharacterized protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q028U0_SOLUE Length = 207 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 65/196 (33%), Gaps = 18/196 (9%) Query: 20 NASATPASGALLQQMNLASQSL-NYELSFI--SINKQGVESLRYRHARLDNRPLAQLLQM 76 ++A P + A ++Q++ + L NY L ++ N R R DN ++ + Sbjct: 3 GSAAEPGAEATVRQISERYRQLDNYTLDYLDYYTNTGQYHR-RVSFMRPDNY---RIESL 58 Query: 77 DGPRREV-VQRGNEISYFEPGLEPFTLNGDYIVD--SLPSLIYTDFKRLSPYYDFISVGR 133 D + + + N + P L + + F+ Sbjct: 59 DESVKIIQIINANGRWLYAPELRQYIFVPGQDKGHPAFEVYWVERLASQMKAAQFLPDEA 118 Query: 134 TRIADRL--CEVIRVVARDGTR-YSYIVWMDTESKLPMRVDLLDRDGETLEQFRVI--AF 188 IA R C V+RV D R S +W+D E L +R LE + Sbjct: 119 LNIAGRNINCRVVRV---DVQREASVTLWIDREQNLVIRYVGAGYSANGLESVSTTLVSA 175 Query: 189 NVNQDISSSMQTLAKA 204 +N D+ + Sbjct: 176 EINSDLPRDEFIFQPS 191 >UniRef50_Q1CYJ5 Putative uncharacterized protein n=3 Tax=Proteobacteria RepID=Q1CYJ5_MYXXD Length = 256 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 29/231 (12%), Positives = 66/231 (28%), Gaps = 35/231 (15%) Query: 22 SATPASGALLQQMNLASQSLNYELSFISINKQGVE----SLRYRHARLDNRPLAQLLQMD 77 +A P + +L+ AS G+ ++R ++ +LL + Sbjct: 30 AAEPDAAEILK----ASDR---------SRGGGLPGIRWTVRITPESGVDKEPERLLTLK 76 Query: 78 G-------PRREVVQ--------RGNEISYFEPG-LEPFTLNGDYIVDSLPSLIYTDFKR 121 RE V+ + PG +P ++ + S Sbjct: 77 ANATASLAETREPVRFKGSKLLQVDRNMWMSRPGLRKPIPISPRQKLSGQASQGDIASTN 136 Query: 122 LSPYYDFISVGRTRIADRLCEVIRVVARDGT--RYSYIVWMDTESKLPMRVDLLDRDGET 179 + Y + + V+ + A + W+ E ++ ++ + G+ Sbjct: 137 YAVDYQGKLLREEDVNGEASYVLELKAINTFCTYDRITYWVSKERQVGVKAEFFSLSGKL 196 Query: 180 LEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQG 230 L+ N + ++K + L+ T L +G Sbjct: 197 LKSATFEYGNQLTHEGKTFPFVSKMTIQDALTPARTTLEYADVQVTELARG 247 >UniRef50_B3PIM7 Putative uncharacterized protein n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PIM7_CELJU Length = 279 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 20/126 (15%), Positives = 39/126 (30%), Gaps = 6/126 (4%) Query: 87 GNEISYFEPGLEPFT-LNGDYIVDSLPS---LIYTDFKRLSPYYDFISVGRTRIADRLCE 142 ++ + P ++ ++ + Y + + + Sbjct: 118 NDDQWLYLPSIKRVKKISSKNKRSPFFGSEFAFEDLSSQEVEKYTYHYLNDEVVDGLDSY 177 Query: 143 VIRVVARD-GTRYS-YIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQT 200 VI+ D + YS IVWMD E ++D DR L+ + + +D Sbjct: 178 VIQRTPNDPESAYSKLIVWMDKEHLQIRKIDYYDRKEALLKTLTASDYTLYEDKFWRASN 237 Query: 201 LAKANL 206 L N Sbjct: 238 LHMVNH 243 >UniRef50_D0MJ06 Outer membrane lipoprotein carrier protein LolA n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MJ06_RHOM4 Length = 220 Score = 45.3 bits (106), Expect = 0.003, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 72/197 (36%), Gaps = 22/197 (11%) Query: 29 ALLQQMNLASQSLN-YELSFISI----NKQGVESLRYRHARLDNRPLAQLLQMDGPRREV 83 L++++ Q ++ + SF+ I + ++LR R + ++ PR+ + Sbjct: 35 QLMERLRARYQQIDALQASFVQILQTPYAERPDTLRGRLWLQGD--RYRVET---PRQTI 89 Query: 84 VQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYY--DFISVGRTRIADRLC 141 V G + P +N D +P +Y + +G I + Sbjct: 90 VTDGRTTWVYLPDTRQVLIN-----DYVPDETGFSLNEFLLHYSDRYEVLGGEAITYQNT 144 Query: 142 --EVIRVVA-RDGTRYS-YIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSS 197 +R+ R + ++W+ L RVD+ D + + F + +N +S Sbjct: 145 AYHRLRLRPLRPEAPFQEVVLWVRDRDLLVTRVDVRDVNDTRM-TFLLSDLVLNPALSPE 203 Query: 198 MQTLAKANLPPLLSVPV 214 + T + + ++ + Sbjct: 204 LFTFSPPDGVEVVDLRQ 220 >UniRef50_B5JN43 Putative uncharacterized protein n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JN43_9BACT Length = 247 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 31/248 (12%), Positives = 73/248 (29%), Gaps = 53/248 (21%) Query: 2 KQLWFAMSLVTGSLLFSANASATPASGALLQ---------QMNLASQSLNYELSFISINK 52 +++ A + L S A + ++L+ + A +S + +F Sbjct: 7 RKVLVAFLSLVSFLQVSLQAELSDDVVSVLEANIEASGGREALAAIKSSRLKGTFSISAM 66 Query: 53 QGVESLRYRHARLDNRPLAQLLQMDGPRREVVQ--RGNEISYFEPGLEPFTLNGDYIVDS 110 + A D + + + G E++Q G +P L+ I Sbjct: 67 GMTGTSEIVQAYPD--KVYSVQTLPGMG-EMIQAFDGEVGWAQDPMQGFRLLSEGEIATL 123 Query: 111 LPSLIYTDFKRLSPYYDF-ISVGRTRIADRLCEVIRVV---ARDGTRYSYIVWMDTESKL 166 + + D + + + + V++++ + D + Y E+ L Sbjct: 124 KQNESFADMLDFESAFSGGEVLADADVNGVMATVLKLIDAESGDEQTHYYS----KETGL 179 Query: 167 PMRVDL---LDRDGET----------------------------LEQFRVIAFNVNQDIS 195 +R+D+ + G+ L + VN +I Sbjct: 180 LLRMDMIADMGPMGKVPASMNVKSYGEQDGITYPSLIEMTNAGMLISIGFDSLEVNPEID 239 Query: 196 SSMQTLAK 203 S+ + Sbjct: 240 DSLFAAPQ 247 >UniRef50_B0R4V3 Putative uncharacterized protein n=2 Tax=Halobacterium salinarum RepID=B0R4V3_HALS3 Length = 394 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 29/233 (12%), Positives = 59/233 (25%), Gaps = 36/233 (15%) Query: 88 NEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLS-----PYYDFISVGRTRIADRLCE 142 + T+ V LP++ D P Y +G +A R Sbjct: 136 ERVVAAAHDGSTVTVPSR-GVSPLPAIPAADADATDNTTDVPGYAVSYLGARTVAGRNAH 194 Query: 143 VIRVVARDGTRYSY--IVWMDTESKLPMRVDLLDRDGET-------LEQFRVIA------ 187 R+ +W+D P+R T LE A Sbjct: 195 GFRLTPATDAAADMTQTLWLDARYYYPLRTVTTVTSNATTYHLRSHLENVTFNADLSAKP 254 Query: 188 FNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPTWLPQGF-----SEVSSSRRPLP 242 F+ ++ + + + + ++ S LP + ++ R + Sbjct: 255 FSWTPPADATTEIVDTTTRRFDALAALRDASRLSVPDPELPAAYSFDSGRTSGAAHRQVT 314 Query: 243 TMDNMPIESRLYSDGLFSFSVNVNRATPSSTDQMLRTGRRTVSTSVRDNAEIT 295 + P R + + + D G + + +T Sbjct: 315 AEYSAPGAHR------ATMTKFTAPPGGPALDA----GAQVTVAGQPASYLVT 357 >UniRef50_B3JHP5 Putative uncharacterized protein n=2 Tax=Bacteroides RepID=B3JHP5_9BACE Length = 204 Score = 45.0 bits (105), Expect = 0.004, Method: Composition-based stats. Identities = 30/210 (14%), Positives = 66/210 (31%), Gaps = 13/210 (6%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRY 60 MK+ F L+ + + + + A+L + A Q I+ +L Sbjct: 3 MKRFTF-FILMLAATVHTVFGQREAKAQAILDKTAAAYQKAG--GIAITFGGTQQGTLLL 59 Query: 61 RHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFK 120 + +D + G + + TL+ + Y Sbjct: 60 K---------ESCFYLDCAGIKSWFDGKTQWSYAQQNDEVTLSTPSPEEIQSVNPYALIT 110 Query: 121 RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETL 180 +++ +G + + + + R I + + P+ + L +GET Sbjct: 111 SYKTKFNYRYIGSKNRNGKQGQEVLLTPRQTGDIKSITLTVSAAYEPLYIGLSLSNGETQ 170 Query: 181 EQFRVIAFNVNQDISSSMQTLAKANLPPLL 210 E F + ++ N+++S S K P Sbjct: 171 E-FNITSYQTNRNLSISDFRFDKKKYPNAE 199 >UniRef50_Q2KWE1 Outer-membrane lipoprotein carrier protein n=5 Tax=Bordetella RepID=LOLA_BORA1 Length = 209 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 30/171 (17%), Positives = 55/171 (32%), Gaps = 24/171 (14%) Query: 44 ELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLN 103 SF RP QL V+ G ++ ++P L T Sbjct: 61 SGSFAFQRPGKF-------KWAVARPYEQL---------VISDGKQVYQYDPDLAQVTER 104 Query: 104 G-DYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLC-EVIRVVARDGTRYSYIVWMD 161 D + + P+ I L + + DR + +R R+ V + Sbjct: 105 KVDQAIGTSPAAILFGSGDLDKAFHVSPLP-----DRDGLQWLRAKPRNADAGFSQVDIA 159 Query: 162 TESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSV 212 LP RV+LLD G+T + + N + ++ + ++ + Sbjct: 160 MNGDLPARVELLDAFGQT-TRVDLSNIQANPKLPAAEFHFTAPSGVDVVKM 209 >UniRef50_Q0AW72 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AW72_SYNWW Length = 282 Score = 44.6 bits (104), Expect = 0.005, Method: Composition-based stats. Identities = 23/199 (11%), Positives = 65/199 (32%), Gaps = 15/199 (7%) Query: 17 FSANASATPASGA-LLQQM---NLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQ 72 SA +S + +L+ + A ++++ + + + + + + ++ Sbjct: 83 ASAPSSDKLSDSEPILKDLLGKGKAVSEMSFDCE--TQIGE--QKMLVKTWIKGKKVRSE 138 Query: 73 LLQMDGPRREVVQRGN---EISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFI 129 + + + + + + ++P + T + S + Sbjct: 139 MESPEAVGKIINIIDSAAGVVYVYQPEQKMATKMDISMAQQDGSSSPQEDLEAMNPDKMK 198 Query: 130 SVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFN 189 VG+ I + C V + A D + S VW+ E+ +P+R++ + + Sbjct: 199 YVGKDTIDGKKCLVYEITA-DNSGTS-KVWLWEENGIPLRMEATADGEKLV--IVYRNIK 254 Query: 190 VNQDISSSMQTLAKANLPP 208 V S + + Sbjct: 255 VGGIPDSMFELPEGTQIME 273 >UniRef50_C1M5T8 Putative uncharacterized protein n=1 Tax=Citrobacter sp. 30_2 RepID=C1M5T8_9ENTR Length = 216 Score = 44.2 bits (103), Expect = 0.006, Method: Composition-based stats. Identities = 24/111 (21%), Positives = 43/111 (38%), Gaps = 11/111 (9%) Query: 96 GLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVV-----ARD 150 ++ I ++ + + L +VG+ +A R + VV A D Sbjct: 112 DERGHRVDRSDIG-----VLLGNIRHLQREGTTTTVGKENLAGRATTRVSVVGPGTIAVD 166 Query: 151 GTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQTL 201 G + Y VW+D LP +V DG+ LE + A +N ++ + Sbjct: 167 G-VHRYDVWLDNYHGLPAKVISYAPDGQRLETVLLDAMVINIRFPANFFSP 216 >UniRef50_A7VAU1 Putative uncharacterized protein n=6 Tax=Bacteroides RepID=A7VAU1_BACUN Length = 216 Score = 43.8 bits (102), Expect = 0.008, Method: Composition-based stats. Identities = 24/206 (11%), Positives = 59/206 (28%), Gaps = 28/206 (13%) Query: 21 ASATPASGALLQQMNLASQSLNYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPR 80 ++ P + +L++ A + + A +L ++G + Sbjct: 26 SAQQPDAKNILERTAEAFRK----------AGGVKLAFTV---NEQQGSYAGVLYLEGEK 72 Query: 81 REVV-------QRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFI---S 130 V G+ + + ++ + Y Y Sbjct: 73 FVVETEGMKTWFDGHTQWSYVASADEVNVSEPTQEELQTLNPYAWLSLYKQGYRLKLSSV 132 Query: 131 VGRTRIADRLCEVIRVVARDGTR--YSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAF 188 G+ D+ I + A D + S +++ ++ +VDL R + + + ++ Sbjct: 133 GGKQ---DKSVYYITMTAADKRKDPESVYLFVTKDTYRLHQVDLAPRGSKYMTTILIDSY 189 Query: 189 NVNQDISSSMQTLAKANLPPLLSVPV 214 Q S K P + + Sbjct: 190 QTGQSYPDSFFVFDKKAYPTAEVIDM 215 >UniRef50_C4LEV5 Putative uncharacterized protein n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4LEV5_TOLAT Length = 207 Score = 43.4 bits (101), Expect = 0.009, Method: Composition-based stats. Identities = 31/210 (14%), Positives = 73/210 (34%), Gaps = 21/210 (10%) Query: 10 LVTGSLLFSANASATPASGALLQQMNLASQSL-NYELSFISINKQGVESLRYRHARLDNR 68 ++ S+ +A P + L + + +Y ++ S + G +++RY + + Sbjct: 1 MLLISVFVAALTGIAPDA---LTKAIDNYHRVESYSVTIRSSGENGAQNIRYYYKKPGFV 57 Query: 69 PLAQLLQMDGPRREVVQRGNEISYF------------EPGLEPFTLNGDYIVDSLP-SLI 115 + + +G + + P +G VDS + Sbjct: 58 RMEFIHPHEGAVLIYSPDTRRVRVWPFGINHFPELNLSPDNLLIRGSGGQQVDSSDIGAL 117 Query: 116 YTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTR----YSYIVWMDTESKLPMRVD 171 + + + L+ V ++ R + V D + Y +W+DT ++ P++V Sbjct: 118 FMNIRTLATGGTSEIVKEEYVSGRTDLHMVVTGADKFVVGGVHRYELWLDTGNQFPIKVI 177 Query: 172 LLDRDGETLEQFRVIAFNVNQDISSSMQTL 201 D+ +E + A VN + + Sbjct: 178 SHDQYNTIIETVIMEAPEVNAQLPDRLFNP 207 >UniRef50_Q73J73 Putative uncharacterized protein n=2 Tax=Treponema RepID=Q73J73_TREDE Length = 261 Score = 43.4 bits (101), Expect = 0.010, Method: Composition-based stats. Identities = 18/113 (15%), Positives = 39/113 (34%), Gaps = 10/113 (8%) Query: 85 QRGNEISYFEPGLEPFT-LNGDYIVDSLPSLIYTDFKRLS----PYYDFISVGRTRIADR 139 + ++ + P L + G D+ L +G + Sbjct: 101 RANDK-WIYLPALRTVRRIAGAEGSKPFMGT-DADYDDLETRKIDDDTHTLLGEETVDSY 158 Query: 140 LCEVIRVVARD--GTRYSYIV-WMDTESKLPMRVDLLDRDGETLEQFRVIAFN 189 C + A D +RYS + ++D + +P+ ++ D+ G L+ +V Sbjct: 159 NCWKVESTAVDPKSSRYSKKITYIDKVTCIPVMAEMYDKKGALLKVLKVEKLE 211 >UniRef50_A9B0Y6 Putative uncharacterized protein n=1 Tax=Herpetosiphon aurantiacus ATCC 23779 RepID=A9B0Y6_HERA2 Length = 385 Score = 43.4 bits (101), Expect = 0.011, Method: Composition-based stats. Identities = 24/258 (9%), Positives = 73/258 (28%), Gaps = 60/258 (23%) Query: 10 LVTGSLLFSANASATPASGALLQQMNLASQSLN-----YELSFISINKQGVESLRYRHAR 64 ++ +++ + + ++ ++ + N + + S G ++ Sbjct: 1 MLVLTMVLAGCGQEDITAENIVTKIREGQANTNNVHAIMRVDYTSDQATGFIKAEVWSSK 60 Query: 65 LDNRPLA-------QLLQMDGP-----RREVVQRGNEISYFEPGLE-------------- 98 N+ + +D EVV G + +++P Sbjct: 61 TGNKDAEGNEIKAFRAKILDANDAKMVGAEVVTDGTQGWFYDPAENKAYVGTAAELSESQ 120 Query: 99 --------------PFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVI 144 ++ ++ L ++ L +G +A + Sbjct: 121 MGQGQQDQEQGQGGRGRMDQTEMLGQLQGVVEKGLDAL----TITILGEEEVAGFNTYKV 176 Query: 145 RVVARDGTR--------YSYIVWMDTESKLPMRVDLLDRD-GETLEQFRVIAFNVNQDIS 195 + + + VW++ + +P++ L +D G F VN+ I Sbjct: 177 SIAPKSDAQQQLPIDLLVDINVWLEDTNWMPVKFVLDAKDMGNV--SFAAETLEVNKGID 234 Query: 196 SSMQTLAKANLPPLLSVP 213 ++ + ++ + Sbjct: 235 MAIFSAQPPANAEIVKIA 252 >UniRef50_Q1YTK5 Periplasmic chaperone LolA n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTK5_9GAMM Length = 225 Score = 43.0 bits (100), Expect = 0.013, Method: Composition-based stats. Identities = 21/138 (15%), Positives = 48/138 (34%), Gaps = 15/138 (10%) Query: 80 RREVVQRGNEISYFEPGLEPFTLNG-DYIVDSLPSLI-YTDFKRLSPYYDFISVGRTRIA 137 ++++ G + ++P LE + + + + P+++ D RL Y + R Sbjct: 98 PQQIIADGLTLWVYDPDLEQVIIQPFNQDMAATPAILFSGDLDRLDDAYFVTQLAEGR-- 155 Query: 138 DRLCEVIRVVARDGTR--YSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDIS 195 + G S + D + P + L D G+T R +N +S Sbjct: 156 ------FELKPEQGGSLFNSMTIAFDGST--PTSIRLTDTLGQT-TTIRFSQLELNPVLS 206 Query: 196 SSMQTLAKANLPPLLSVP 213 + + +++ Sbjct: 207 GDLFVFQAPDGVDVINNA 224 >UniRef50_UPI00016C47D6 hypothetical protein GobsU_33384 n=1 Tax=Gemmata obscuriglobus UQM 2246 RepID=UPI00016C47D6 Length = 262 Score = 43.0 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 17/83 (20%), Positives = 34/83 (40%), Gaps = 10/83 (12%) Query: 129 ISVGRTRIADRLCEVIRVVAR--DGTRYSYI--VWMDTESKLPMRVDLLDRD------GE 178 + G + A R + R R+++ V++D E+KLP+R + D+ G+ Sbjct: 180 VYTGDFQFAGRNVTRYEIFTRRPHAFRHAHRTLVYVDKETKLPLRYEAYDQPKSGAAVGD 239 Query: 179 TLEQFRVIAFNVNQDISSSMQTL 201 E + N + ++ L Sbjct: 240 LFEAYSFSDVKRNVGLGEAVFDL 262 >UniRef50_C0YK29 Outer-membrane lipoprotein carrier protein n=2 Tax=Flavobacteriaceae RepID=C0YK29_9FLAO Length = 215 Score = 43.0 bits (100), Expect = 0.014, Method: Composition-based stats. Identities = 29/210 (13%), Positives = 72/210 (34%), Gaps = 13/210 (6%) Query: 1 MKQLWFAMSLVTGSLLFSANASA---TPASGALLQQMN---LASQSLNYELSFISINKQG 54 MK + + L + + A+A + +L + + ++ ++ SF S Sbjct: 1 MKNIISKVILGSFVVGAVGMANAQKIDAKAKKILDDITANYNSKKNSYFKFSFGSGLNGQ 60 Query: 55 VESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLPSL 114 V + +L MD E + G++I T+ ++ S Sbjct: 61 VTKTEPGIYYVAGEKY-KLKIMD---TEQIFDGSKIYNINADDMEVTIAKPNGSSTMFSP 116 Query: 115 IYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYI-VWMDTESKLPMRVDLL 173 I Y+ G+ + + I++ Y+ +++D+ K ++++ Sbjct: 117 INY-LTTYRNDYNVTYNGKKMVNGVNADFIKLTPVKTNGIKYVYLFVDSVKKQMVKLEQH 175 Query: 174 DRDGETLEQFRVIAFNVNQDISSSMQTLAK 203 + + + + NQ++ +M K Sbjct: 176 GTNKDVAV-IAIKEYKENQELDPNMFVFDK 204 >UniRef50_Q1DBW5 Putative uncharacterized protein n=1 Tax=Myxococcus xanthus DK 1622 RepID=Q1DBW5_MYXXD Length = 260 Score = 42.6 bits (99), Expect = 0.019, Method: Composition-based stats. Identities = 26/178 (14%), Positives = 61/178 (34%), Gaps = 22/178 (12%) Query: 19 ANASATPASGALLQQMNLASQSLN-YELSF-ISINKQG-----VESLRYRHARLDNRPLA 71 A A A ALL+ ++ + Y+ + ++ +E YR ++ Sbjct: 25 AEAEPKLAPDALLRHIDEKMSFTSDYKGVIRLYETRKDGAKRAMEVHVYRREADND---- 80 Query: 72 QLLQMDGPRREV-----VQRGNEISYFEPGLEPFT--LNGDYIVDSLPSLIYTDFKRLSP 124 LL + R + ++ G + +E + ++++ D RL+ Sbjct: 81 -LLFLSTKPRHLAGMGTLRIGRNLWDYEATTGSWRRNTQRTNLLNTFTCEADFDRSRLAE 139 Query: 125 YYDFISVGRTRIADRLCEVIRVVARDGTRY--SYIVWMDTESKLPMRVDLLDRDGETL 180 Y G + + + A++ +W+D ++ + ++ G TL Sbjct: 140 DYAGKDEGDDTVNGVAYRKLLLTAKNDQVTFPLMRIWVDPQNNI-VKKVGYTASGRTL 196 >UniRef50_A4BKL6 Putative uncharacterized protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BKL6_9GAMM Length = 247 Score = 42.6 bits (99), Expect = 0.019, Method: Composition-based stats. Identities = 35/240 (14%), Positives = 79/240 (32%), Gaps = 19/240 (7%) Query: 1 MKQLWFAMSLVTGSLLFSANASATPASGALLQQMNLASQSLNYELSFIS-INKQGVESLR 59 M ++ FA L + +A A + P + LL++++ Q N I E Sbjct: 1 MSKVLFAGVLSAALVAGAALAESDPEAVELLEKVDNLYQQDNSYAVMTMDIQTPDFERSM 60 Query: 60 YRHARLDNRPLAQLLQMDGPRRE---VVQRGNEISYFEPG-LEPFTLNGDYIVDSLPSLI 115 + + + ++ + E ++R +++ + P + + ++ S Sbjct: 61 TLESWSIGLDYSLVRVLEPKKEEGVATLKREDDMWNYLPKIRKVLKVPPSMMMGSWMGSD 120 Query: 116 YTDFKRLSPY-----YDFISVGRTRIADRLCEVIRVVARDGTRY---SYIVWMDTESKLP 167 +T+ + +D + + A+ T + +DTES LP Sbjct: 121 FTNDDLMREGSWVEEFDVTLSETE-----DLYTLDLNAKPETVTVWGQMQIDIDTESLLP 175 Query: 168 MRVDLLDRDGETLEQFRVIAFNVNQDIS-SSMQTLAKANLPPLLSVPVGEKAKFSWTPTW 226 + D DG + + ++ S+ L N P + ++ F Sbjct: 176 VSQRYFDEDGTLMREMLFKEVKTFDGVTLPSVMELNPLNKPGHQTRVTYQEMSFDVDIDE 235 >UniRef50_A6TVK9 Outer membrane lipoprotein-sorting protein-like protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TVK9_ALKMQ Length = 219 Score = 42.3 bits (98), Expect = 0.021, Method: Composition-based stats. Identities = 19/137 (13%), Positives = 45/137 (32%), Gaps = 8/137 (5%) Query: 83 VVQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVG--RTRIADRL 140 ++ G + +P + + + + F L Y+ G + Sbjct: 86 ILSNGKKSWLIQPSINQTRMLDSFDHSQEQMMFIGYF--LRNLYEAEDSGIETETLNG-E 142 Query: 141 CEVIRVVARD--GTRYSY-IVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSS 197 ++ +SY +W+D + P+++ +LD++G + F N I + Sbjct: 143 AYIVITTPLPEVNYYFSYQKLWIDKKKIEPVKLHILDQEGGIRFRVFYENFQYNPIIEDT 202 Query: 198 MQTLAKANLPPLLSVPV 214 + L L + Sbjct: 203 LFYLKSQEERILENNES 219 >UniRef50_Q01T82 Redoxin domain protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01T82_SOLUE Length = 608 Score = 42.3 bits (98), Expect = 0.024, Method: Composition-based stats. Identities = 35/213 (16%), Positives = 72/213 (33%), Gaps = 24/213 (11%) Query: 22 SATPASGALLQQMNLASQSL-NYELSFISINKQGVESLRYRHARLDNRPLAQLLQMDGPR 80 + T A+ ALL Q+ ++ +Y+ S + + R + RL + +G Sbjct: 281 APTAAARALLAQVAKQFRTTPSYDESISTEIRDRT-PTRVKTYRLSPDRY-RKEVDNGNE 338 Query: 81 REV-VQRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADR 139 V + G P +T++ + S + +D R +P G + Sbjct: 339 SWVSLSDGKSFWTIYPASNQYTVSPQSNK--IGSSLISDPIRGTP----RITGHETLYGA 392 Query: 140 LCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQ 199 C ++R A G SY W++ E + +R ++ G + + + +++ + + Sbjct: 393 ACTIVRKKASIGVIESY--WIEDERHV-LRKLTVEVGGRVQSEIQYPVVRLGEEMKADLF 449 Query: 200 TLAKANLPPLLSVPVGEKAKFSWTPTWLPQGFS 232 W P FS Sbjct: 450 AYDPR-----------ATNATEWRMGSRPTPFS 471 >UniRef50_B5EUN7 Putative uncharacterized protein n=52 Tax=Vibrionales RepID=B5EUN7_VIBFM Length = 265 Score = 42.3 bits (98), Expect = 0.025, Method: Composition-based stats. Identities = 17/148 (11%), Positives = 48/148 (32%), Gaps = 12/148 (8%) Query: 51 NKQGVESLRYRHARLDNRPLAQLLQMDGP---RREVVQRGNEISYFEPG-LEPFTLNGDY 106 ++ R ++ L+ + ++++ G+ P P + Sbjct: 65 KNDELDKTR-QYTVYTRENRESLVLFNSQVEAGQKMLMLGDNYWLLMPKSRRPIRITPMQ 123 Query: 107 IVDSLPSLIYTDFKRLSPYYDFISVGRTR---IADRLCE----VIRVVARDGTRYSYIVW 159 + S+ S Y V T + + ++ + + ++ +W Sbjct: 124 KLLGEASVGDISTLTWSEDYQGEWVESTTFELTDGQAVQTEKIKLKATTKGASYFTIDLW 183 Query: 160 MDTESKLPMRVDLLDRDGETLEQFRVIA 187 ++ + P++ DL R G+ ++ I Sbjct: 184 LEQGTGFPIKADLYLRSGKMAKEAWFIK 211 >UniRef50_Q8PU97 Conserved protein n=2 Tax=Methanosarcina RepID=Q8PU97_METMA Length = 222 Score = 42.3 bits (98), Expect = 0.025, Method: Composition-based stats. Identities = 16/133 (12%), Positives = 47/133 (35%), Gaps = 6/133 (4%) Query: 85 QRGNEISYFEPGLEPFTLNGDYIVDSLPSLIYTD--FKRLSPYYDFISVGRTRIADRLCE 142 G ++P L D +S+ + +S G + + Sbjct: 91 SDGILTWEYDPITNKTWLINDTSQNSIQTTPTYSEFINSISDNCTINYKGIEYLGEVKTY 150 Query: 143 VIRVVA---RDGTRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAFNVNQDISSSMQ 199 + V++ + +S ++W+D + +P+++ + D + L +++N I + Sbjct: 151 KLEVISSKLNEPESWSRLLWIDPKIWMPLKIQSYNGD-KLLMTLEYENYSINSGIKDTEF 209 Query: 200 TLAKANLPPLLSV 212 ++++ Sbjct: 210 KFKPIEGTEVINI 222 >UniRef50_Q7NE58 Gll4022 protein n=1 Tax=Gloeobacter violaceus RepID=Q7NE58_GLOVI Length = 356 Score = 42.3 bits (98), Expect = 0.025, Method: Composition-based stats. Identities = 35/262 (13%), Positives = 75/262 (28%), Gaps = 42/262 (16%) Query: 2 KQLWFAMSLVTGSLLFSANASATPASGALLQQMN------LASQSLNYE-LSFISINKQG 54 ++ W ++L A + L++ A +E ++G Sbjct: 6 RRRWLVLAL-WFVGQAPAWSQP---PQDWLERYQKVLQALEAPSERRFEQQIQTFGWQEG 61 Query: 55 VESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGL-EPFTLNGDYIVDSLPS 113 + + + A L +G + + + + ++ + P Sbjct: 62 ITTGEFVFRADGGWE-ANLT--EGDQFYKIAHNRLNLVTQSDRLKLYSEYIERPERVAPH 118 Query: 114 LIYTDFKRLSPYYDFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVDLL 173 I D + Y +V TR+ +R+V G +W+D + LP R + Sbjct: 119 AI-VDLGATAETYRVETVETTRLGAGEAVRLRLVPLAGGPLR-ELWLDAATALPRRAVIY 176 Query: 174 DRDGETLEQFRVIAFNVNQDISSSMQTLAKANLPPLLSVPVGEKAKFSWTPT-WLPQGFS 232 + P+ + E+++ W+P GF+ Sbjct: 177 LAG-------------------VWGSADYTVDFQPVERYWLPERSRMQIKMNFWVPVGFT 217 Query: 233 EVSSSRRPLPTMDNMPIESRLY 254 RR ++ R Y Sbjct: 218 -----RRAFAGPVDIGTTYRDY 234 >UniRef50_B5WKG7 Putative uncharacterized protein n=2 Tax=Burkholderiaceae RepID=B5WKG7_9BURK Length = 280 Score = 41.9 bits (97), Expect = 0.033, Method: Composition-based stats. Identities = 15/78 (19%), Positives = 29/78 (37%), Gaps = 4/78 (5%) Query: 95 PGLEPFTLNGDYIVDSLPSLIYTDFKRLSPYYDFISVGRTRIADRLCEVIRV-VARDGTR 153 P + P+T + + + D G + R + V + TR Sbjct: 115 PDVRPYTSDEVKFARDAQVIDGPLLDHAAKGIDVALEGTDTVEGRDAYRLSVRLPSGATR 174 Query: 154 YSYIVWMDTESKLPMRVD 171 + VW+DT++ L ++ D Sbjct: 175 H---VWVDTQNFLDVKSD 189 >UniRef50_C0QCP5 LolF n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QCP5_DESAH Length = 251 Score = 41.5 bits (96), Expect = 0.037, Method: Composition-based stats. Identities = 21/182 (11%), Positives = 57/182 (31%), Gaps = 17/182 (9%) Query: 22 SATPASGALLQQMNL-ASQSLNYELS--FISINKQGVESLRYRHARLDNRPLAQLLQMD- 77 S +LQ + S +Y + S + + + + + + Sbjct: 25 SENITPQQILQYADEIRSPQADYSVMAKITSQKPNKKDKIAIYEILMKGQDNTIIKTLSP 84 Query: 78 ----GPRREVVQRGNEISYFEPG-LEPFTLNGDYIVDSLPSLIYTDFKR--LSPYYDFIS 130 G +++ + F +P ++ D R S YD Sbjct: 85 EVDKGTSLLMLRYD--LWVFLQTISKPLRISLQQ--RLFGEAANGDVARANFSGDYDPEL 140 Query: 131 VGRTRIADRLCEVIRVVARDG--TRYSYIVWMDTESKLPMRVDLLDRDGETLEQFRVIAF 188 + I + ++ + A++ T + +W+ ++ P++ + G+ L+ + Sbjct: 141 IDIVTIKGKTFYLLELTAKNEKVTYHKVKLWVMKDTYYPLKGEFYAFSGKLLKICYYTNY 200 Query: 189 NV 190 + Sbjct: 201 KL 202 >UniRef50_Q1LE66 Conserved hypothetical signal peptide protein n=4 Tax=Burkholderiaceae RepID=Q1LE66_RALME Length = 259 Score = 41.5 bits (96), Expect = 0.041, Method: Composition-based stats. Identities = 10/45 (22%), Positives = 18/45 (40%), Gaps = 2/45 (4%) Query: 127 DFISVGRTRIADRLCEVIRVVARDGTRYSYIVWMDTESKLPMRVD 171 G + +R+ +D R VW+D S L +++D Sbjct: 143 TVELEGTDTVEGHRAYRLRLTTKD--RVQRRVWVDASSFLEVKMD 185 >UniRef50_C7LZI1 Putative uncharacterized protein n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LZI1_ACIFD Length = 392 Score = 41.1 bits (95), Expect = 0.049, Method: Composition-based stats. Identities = 20/197 (10%), Positives = 43/197 (21%), Gaps = 26/197 (13%) Query: 53 QGVESLRYRHARLDNRPLAQLLQMDGPRREVVQRGNEISYFEPGLEPFTLNGDYIVDSLP 112 +G S+R + + L + G + + S+ Sbjct: 94 EGTASVRLWRGVGEGLRVEVLNAQSERDLYASRTGVWLWNSSGEQAMHLVASGSAPSSMS 153 Query: 113 SLIYTDFK----------RLSPYYDFISVGRTRIADRLCEVIRVVARDGTRY--SYIVWM 160 S + F L T +A + + + W+ Sbjct: 154 SAAQSTFDPTTAADTIVAALGTDSTVRLGHNTYVAGQPVYTLVIQPTQAGSTIGRVSFWV 213 Query: 161 DTESKLPMRVDLLDRDGETLEQFRVIAFNV--------------NQDISSSMQTLAKANL 206 D + + + + DG T ++ + + L+ Sbjct: 214 DAANDQVLGMAIQGADGTTDLSWQFTQISFGSLPASTFTFTPPAGATVRQESVALSPTGC 273 Query: 207 PPLLSVPVGEKAKFSWT 223 L WT Sbjct: 274 MVPLQSSSVTPTASGWT 290 >UniRef50_C8R1Z9 Putative outer membrane protein n=2 Tax=Proteobacteria RepID=C8R1Z9_9DELT Length = 265 Score = 41.1 bits (95), Expect = 0.053, Method: Composition-based stats. Identities = 23/139 (16%), Positives = 46/139 (33%), Gaps = 12/139 (8%) Query: 82 EVVQRGNEISYFEPGLEPFT-LNGDYIVDSLPS--LIYTDFKRLSPYYDFISVGRTRIAD 138 + + R ++ F P L+ + S +Y D +P D + Sbjct: 101 KYLDRDDDRWLFLPDLDLVRRIAAADKRSSFAGSHFLYEDVSGRAPTEDRHELAEETA-- 158 Query: 139 RLCEVIRVVARDGTRY---SYIVWMDTESKLPMRVDLLDRDG---ETLEQFRVIAFNVNQ 192 ++ V D Y VW+D ES LP++ + DR +E + + Sbjct: 159 -EHYILDVTPLDPATVEFSRYRVWIDKESFLPIKAEYHDRSDNIYRVVEALEIEEIDGFP 217 Query: 193 DISSSMQTLAKANLPPLLS 211 + S + +++ Sbjct: 218 TVVKSRVRDLEGGGETVMA 236 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.308 0.144 0.403 Lambda K H 0.267 0.0445 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,954,459,548 Number of Sequences: 3077464 Number of extensions: 80210443 Number of successful extensions: 242634 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 249 Number of HSP's successfully gapped in prelim test: 213 Number of HSP's that attempted gapping in prelim test: 241478 Number of HSP's gapped (non-prelim): 493 length of query: 318 length of database: 1,040,396,356 effective HSP length: 128 effective length of query: 190 effective length of database: 646,480,964 effective search space: 122831383160 effective search space used: 122831383160 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.0 bits) S2: 93 (40.3 bits)