HHsearch 1.5 NAME batch____ FAM FILE query COM //bmm/www/servers/phyre2/HH/hhmake -i /bmm/www/servers/phyre2/public_html/phyre2_output/465e06726de8c853/query.a3m -o /bmm/www/servers/phyre2/public_html/phyre2_output/465e06726de8c853/query.hhm DATE Tue Jan 17 14:55:34 2012 LENG 98 match states, 98 columns in multiple alignment FILT 100 out of 324 sequences passed filter (-id 90 -cov 0 -qid 0 -qsc -20.00 -diff 100) NEFF 6.8 EVD 0.4535 1.0071 SEQ >ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCHHHHHHHHHCCCHHHCCCEEEEEEEEEEECC >ss_conf 95999997289817999984799999999998689399941223777655555577657999971998999999853981651956368999767549 >Consensus MxfxvxxxdxpxxxexRxxxrxxHxxxlxxxxxxgxxxxaGpxxxxxxxxxxxxxxxGsxxixxaxsxeeaxxxixxDPyxxxGvxxxxxIxpwxxvf >batch____ MLYVIYAQDKADSLEKRLSVRPAHLARLQLLHDEGRLLTAGPMPAVDSNDPGAAGFTGSTVIAEFESLEAAQAWADADPYVAAGVYEHVSVKPFKKVF >UniRef50_A3VD09(1-88:107) Putative uncharacterized protein n=1 Tax=Rhodobacterales bacterium HTCC2654 RepID=A3VD09_9RHOB E=8e-05 s/c=0.55 id=21% cov=83% MFFLMENIHHPGKQDERDRLRPDHRDWVGSGGNGLCSVLIGSALWNDDGDA-----IGHWGVLEADTLADARTFAEGDPFYTQGV------------- >UniRef50_C8V4J2(7-105:110) Putative uncharacterized protein n=5 Tax=Eurotiomycetidae RepID=C8V4J2_EMENI E=4e-18 s/c=0.94 id=25% cov=98% --WLVRLPDHPNVLATRIENRPLHLSHNKPHFESGKIAFGGPIYSSQPKDLEDSfkKIIGSIHLCKAATEEEVWDMVRDDPYAKLGVWnlDEVVITPMK- VF >UniRef50_C5T8S7(8-97:104) YCII-related n=1 Tax=Acidovorax delafieldii 2AN RepID=C5T8S7_ACIDE E=5e-13 s/c=0.84 id=24% cov=93% -LFAVRFHDHAHQVSVRQAQMQAHLAWLDGHQEH--ILVAGSLRRDPGLPP-----VGGLWVVRADSRAEVQALVETDPFWRHGLRASCEILHWSKAF >UniRef50_B8HM58(1-84:101) YCII-related n=1 Tax=Cyanothece sp. PCC 7425 RepID=B8HM58_CYAP4 E=0.0001 s/c=0.57 id=21% cov=87% MKVALRCTFASHSFPQYTAVQQDHLRYLEAHKEQ--IVCSGVTLHEDGSPSIL------LIMLEVSDLGLAESFIEAEPYNQAGCFEQVVLR------ >UniRef50_A2TRT1(1-89:95) Putative uncharacterized protein n=1 Tax=Dokdonia donghaensis MED134 RepID=A2TRT1_9FLAO E=2e-15 s/c=0.93 id=25% cov=91% MKYYILTYTFiENYLEKRTPYRKDHFEVAKAAVAAGSLLLGGAT---------EGPGETGVLIFQVKDKSQVETFAAQDPYVKNGIVSSWEIKEWNVV- >UniRef50_A3PBU8(19-104:104) Uncharacterized protein conserved in bacteria n=8 Tax=Prochlorococcus marinus RepID=A3PBU8_PROM0 E=2e-12 s/c=0.85 id=25% cov=89% --FVVFGEYCEDAIIKRGPFREQHLNRLKNLKDRDILVTLGPTKCTKYLFG----------IFNANDANELKDLIEDDIYWEKGIWINYDVYPWIQAF >UniRef50_A7BCH2(3-89:93) Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BCH2_9ACTO E=2e-15 s/c=0.96 id=23% cov=90% -FYAVEYVYNPSMTETMDEVRPTHRAFLSGLLEQGINIASGPLVGEIP---------GALILINAESQADVERILNEDPFYVAEVIQARLIREWNPV- >UniRef50_A6TVX4(1-92:98) YCII-related n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TVX4_ALKMQ E=7e-13 s/c=0.81 id=26% cov=92% MQFLVTGYDgtDEGALKRRLAVRAEHMELAASMKKEGKYLYAVAILD------ATEKMVGSVLVVDFPTREDLDEWLKIEPYVTGEVWKIIEIKACK--- >UniRef50_C6DAL2(1-89:100) YCII-related protein n=1 Tax=Pectobacterium carotovorum subsp. carotovorum PC1 RepID=C6DAL2_PECCP E=4e-07 s/c=0.63 id=21% cov=91% MFLINISLKDSNTDDKTADQRfEQHRHWFAKYFKEGNFLILGPYQDKEHA---------GVIIAQAENREALEKILAEDVYYPLDL-ANYDVHEFNAIF # NULL 3706 5728 4211 4064 4839 3729 4763 4308 4069 3323 5509 4640 4464 4937 4285 4423 3815 3783 6325 4665 HMM A C D E F G H I K L M N P Q R S T V W Y M->M M->I M->D I->M I->I D->M D->D Neff Neff_I Neff_D 0 * * 0 * 0 * * * * M 1 * * * * * * * * * * 0 * * * * * * * * * 1 0 * * * * * * 5931 0 0 L 2 * * 5378 5824 2845 * 3659 3877 3118 1925 * * 3983 4078 4718 4662 * 5333 * 3863 2 0 * * * * * * 6478 0 0 Y 3 * * * * 1213 * * 4912 * 5001 * * * * * * * 3436 3086 1767 3 0 * * * * * * 6805 0 0 V 4 2129 4685 * * 3878 6170 * 3506 * 1786 5314 * * 6411 * * 5052 2622 * 4537 4 0 * * * * * * 6856 0 0 I 5 5024 5046 * * 4667 * * 2151 5630 3208 4817 6072 * * 6180 * * 1053 * * 5 0 * * * * * * 6908 0 0 Y 6 * * * 4657 3565 * 3975 2707 5783 2696 6301 5271 * 6173 4175 4308 4273 2675 6464 3201 6 0 * * * * * * 6922 0 0 A 7 2536 3061 * 6590 3529 4048 5960 3300 6226 4098 * 5725 * 5933 3951 5179 4069 3941 6476 3360 7 19 * 6285 * * * * 6922 0 0 Q 8 4299 5725 * 3731 4285 * 4420 3967 5566 4057 4747 6199 2719 4473 3714 6467 2992 6155 * 2870 8 38 * 5262 * * 0 * 6895 0 1000 D 9 5931 * 859 * 4955 * 5718 * 4110 6284 * * * 6306 5531 4693 3838 4670 * 2963 9 122 3788 6884 875 1137 1017 983 6917 2771 1549 K 10 3633 6206 2746 6274 5435 4039 3875 6396 2543 4145 5818 4321 5435 * 2837 * 5529 4216 * 4457 10 48 5420 6764 0 * 880 1130 6939 1697 1517 A 11 3203 6221 * 2960 * * * * 3787 * * 4888 991 5959 * 4504 3936 6082 * * 11 119 4470 4869 889 1120 0 * 6953 2466 1448 D 12 3844 * 1918 3331 * 1750 5750 * * * * 2918 * 5009 * 4621 4429 * * * 12 13 6773 * 1000 1000 * 0 6950 1000 1921 S 13 2006 * 4297 5439 5082 3732 5586 6965 4625 * 3382 6964 * 6631 6246 2840 3957 3041 6214 4763 13 77 6234 4692 0 * 0 * 6950 1000 1921 L 14 3494 * 4686 4698 4907 5305 6432 4612 5395 1847 5219 5873 4161 4133 4760 3347 4009 5633 * 4414 14 0 * * * * 1551 602 6960 0 2032 E 15 2679 * 3103 1325 * 6742 6826 5350 4205 * * 6354 3561 5397 5663 4404 5813 6634 * 5977 15 44 5811 6347 1000 1000 0 * 6989 1000 1505 K 16 5374 * 3979 3390 * 5742 5115 4561 2254 3095 6460 * 5516 4680 2229 * 4731 4310 6202 6235 16 18 6317 * 1000 1000 * 0 7063 1000 1000 R 17 4926 * 5355 4668 6511 * * 4651 5161 6970 5398 * * * 566 6628 6310 3681 * 5907 17 0 * * * * * 0 7063 0 1000 L 18 2680 * 3592 4594 5939 5516 * 4140 3691 2500 3827 5548 6512 3388 5012 4541 4335 6168 * 4842 18 67 4874 6496 680 1412 0 * 6991 1840 1000 S 19 2135 * 4490 1796 6221 5771 * * 4229 6406 6064 6625 4102 4166 4351 3362 4113 * * * 19 0 * * * * * 0 6985 0 1000 V 20 3208 6264 * * 4389 * 2977 3455 * 2655 * 3586 * 4490 5680 * 5846 2088 * 4209 20 29 * 5636 * * * 0 6927 0 1000 R 21 6562 * 5007 6453 4383 * * 6667 6045 2258 6456 * * 4508 916 6427 * 5185 * 4626 21 17 6400 * 0 * 557 1642 6915 1000 1991 P 22 3310 * 3299 2321 * 5933 6111 * 4636 6475 * 5126 1436 3810 * 4452 * * * * 22 16 * 6461 * * 0 * 6930 0 1000 A 23 1443 * 3434 2452 * 6684 * 5163 6496 5383 * 6122 5816 3097 4264 6175 4805 4893 * * 23 12 6921 * 2000 415 0 * 6919 1000 1000 H 24 * * * * * * 22 * * * * * * 6052 * * * * * * 24 32 6552 6464 2000 415 * * 6985 1000 0 L 25 5973 6336 * 6436 3860 5379 6329 3511 4067 1395 5573 * * 6040 2369 5036 * 4243 6156 * 25 0 * * * * * 0 6911 0 1000 A 26 1752 6336 3651 1918 * 5679 5662 5869 5633 5289 * 4439 5843 3825 5462 3899 6337 6910 * * 26 0 * * * * * 0 6911 0 1000 R 27 5127 6627 * * 3174 3813 3292 * 5429 5747 * 3866 * 6436 3913 * * 6799 2404 1781 27 0 * * * * 0 * 6911 0 1000 L 28 3407 * * * 4290 * * 3641 * 1197 3050 6442 * 5553 * 6276 * 2624 6709 * 28 73 6820 4634 1000 1000 * * 6985 1000 0 Q 29 2369 * 3547 3071 * 3955 * 5060 2439 6078 * 5846 * 3145 3058 5736 * 5842 5538 * 29 16 6543 * 3700 115 * 0 6894 1000 2485 L 30 2752 6093 3710 3185 * 4303 6553 * 3049 6980 * 4249 3272 4086 4056 3333 4460 5103 * 6423 30 37 * 5303 * * 461 1869 6894 0 2485 L 31 3713 6659 5376 5359 4510 4247 3220 6500 5543 1574 3757 4884 5643 4414 6549 5418 * 6502 * 3770 31 22 6064 * 1000 1000 1864 463 6909 1000 2475 H 32 3129 6468 4680 3640 3796 4393 3827 4289 2950 4345 5991 5768 4999 6137 3809 5817 * 3663 * 3510 32 17 * 6428 * * 0 * 6921 0 2087 D 33 2545 * 3176 2331 6262 * * * 2901 6610 * 3074 5648 3965 3542 3958 * * * 6783 33 122 * 3620 * * 0 * 6917 0 1000 E 34 2571 * 4474 2354 * 3838 5868 * 3492 * * 4264 6975 3821 2877 3190 5167 * 6521 * 34 93 * 4007 * * * 0 6968 0 3154 G 35 * 6851 5252 4665 6223 553 6521 6577 4752 5889 * 5458 * 5758 6349 4410 5311 5075 * * 35 33 6336 6587 0 * 1053 948 6818 1000 4073 R 36 4275 5978 6143 4504 * 6475 5655 3726 2575 3888 4933 3679 * 6542 3034 4539 3215 3751 4732 5265 36 45 6407 5731 0 * 247 2668 6872 1000 3296 L 37 6150 6784 * 6061 3564 * * 2007 6350 1773 5585 * * 5289 * 6051 4492 2796 6078 4086 37 0 * * * * 1673 543 6975 0 2026 L 38 4589 7007 * 4731 4015 * * 3086 3872 1614 * * 5887 3822 5637 6211 5844 2365 7472 * 38 23 6782 7265 0 * 985 1016 6920 1000 1587 T 39 2795 3966 * * 2612 4081 * 3588 * 2617 3624 6658 * 6444 5535 5588 3855 3638 5840 6462 39 39 * 5230 * * * 0 6915 0 1708 A 40 1401 5380 * * 6338 1861 * 4648 6680 4774 * * * * 6132 2538 5377 6259 * * 40 46 5488 6760 3429 141 * 0 6936 1094 2646 G 41 5010 * * * * 124 * * * * * * * * 5260 * * 5297 * * 41 52 6308 5447 3000 193 * 0 6927 1000 2882 P 42 1938 * * * 6317 4186 * * 6417 * * 6037 858 * 5232 4710 6210 6108 * * 42 91 * 4032 * * * 0 6866 0 3308 M 43 5898 * * * 2528 6091 * 3372 7075 1466 4626 * * * * 5989 2737 4243 6418 4094 43 190 5131 3396 3169 170 2858 214 6786 1725 3934 P 44 2919 6384 5789 * 3963 5393 * 5008 4266 1795 5195 * 5146 6166 4848 4863 4743 2936 5184 4491 44 48 5689 6199 2322 322 * 0 6753 1000 4622 A 45 3758 6165 1810 3465 * 3330 4955 * 4454 6066 5454 2618 6216 * 5940 4515 4339 5786 5851 * 45 136 6383 3683 1000 1000 2760 230 6732 1000 4634 V 46 2977 6225 2754 2621 * 4164 * 5617 3690 5339 * 4797 3811 6455 5340 2994 3769 5151 * * 46 131 * 3524 * * * 0 6688 0 4927 D 47 4098 * 1360 3305 * 5605 4020 * 5923 * * 4034 4209 4076 5099 4000 6088 3807 * * 47 0 * * * * 3041 187 6660 0 5221 S 48 3649 * 3032 3197 * 1554 5967 * 5113 6179 6244 4592 3573 4781 * 3708 5500 * * 5956 48 217 * 2841 * * 3253 160 6687 0 5046 N 49 3721 * 6095 3189 5458 3174 4830 * 2298 3548 * 4454 3820 4128 4620 3366 5008 * * * 49 253 * 2634 * * 4225 79 6615 0 5218 D 50 3520 * 2088 4205 3475 4832 * * * * 5747 5663 2143 5846 5263 3748 3790 4523 * * 50 332 5426 2458 1000 1000 4872 50 6565 1000 5463 P 51 2956 5326 4106 4549 5435 1768 * * * 5417 5588 * 2475 * 3810 4246 4642 5899 * 5401 51 192 * 3007 * * 3750 111 6377 0 5919 G 52 3275 * 3335 2662 * 2416 * 5046 5365 * * 4136 4193 4488 2712 * 3930 5421 * * 52 149 5223 3803 0 * 2665 248 6177 1000 6067 A 53 4071 * 3161 3226 5713 2715 * * 3411 5382 5627 * 3421 3722 3648 4452 3277 * 6115 * 53 171 5101 3593 0 * 2388 306 6344 1000 5929 A 54 2829 * 3890 3339 4679 2877 * * 3875 4603 4548 6374 3001 * 3842 4001 4108 4695 * * 54 119 5546 4107 1000 1000 3472 136 6434 1000 5897 G 55 4195 * 2369 4021 * 3689 5401 * 3112 5480 * 4687 1845 4130 * 5958 4726 5465 * * 55 28 5686 * 2000 415 1989 419 6377 1000 5879 F 56 3984 * 5512 6031 2394 2997 * 3073 5666 4473 2306 * 5531 * 3780 6027 * 4170 * 4920 56 61 5512 5673 2000 415 1719 522 6492 1000 5675 T 57 3523 6199 5695 6533 6299 5684 * 2502 5546 5079 5768 3908 4303 * 4817 3318 2583 2639 * 6515 57 52 5778 5859 3585 126 1639 559 6579 1000 5071 G 58 6416 * * * * 106 * 5851 * * * * * * * 5675 5489 * * * 58 15 * 6599 * * 804 1227 6652 0 4713 S 59 2440 * * 6186 * 1474 5996 * * 6457 6190 * * * * 1398 5523 * * * 59 0 * * * * 695 1387 6822 0 3637 T 60 3866 * * * 3186 * 6294 3332 * 1972 4075 * * * * 5705 3348 2113 6038 4988 60 0 * * * * 1497 631 6877 0 2164 V 61 5908 6329 * * 3734 5091 5275 2170 * 1877 2771 * * * * 6762 * 3402 4037 4842 61 0 * * * * 1112 896 6890 0 1623 I 62 6254 * * * 6241 6247 * 1431 * 1927 4682 5738 * 5435 * 6265 * 2102 * * 62 0 * * * * 0 * 6908 0 1000 A 63 3251 4707 * 6201 2419 * * 2981 6663 2622 5181 * * * * * * 2000 * 3653 63 33 * 5477 * * * * 6985 0 0 E 64 4808 * 3303 1851 5478 * 5673 6649 4815 5096 * 2880 * 3959 2649 5067 5349 4621 * 6099 64 0 * * * * 1000 1000 6904 0 1528 F 65 1014 5307 5412 6177 3731 5232 6629 * * 5438 6380 6555 * * * 5165 3366 2648 * * 65 9 * 7327 * * 0 * 6919 0 1000 E 66 2621 * 2796 1943 * 5154 * * 3974 * * 4053 3382 5474 4893 3981 5432 4542 * * 66 8 * 7541 * * * 0 6926 0 1000 S 67 * * 1802 5612 * 5557 * * 6912 * * 4489 6545 * 5505 1446 2191 * * * 67 0 * * * * 0 * 6932 0 1539 L 68 3692 * 4988 3114 5434 6508 * 3309 3416 2700 6464 6832 5752 6231 1953 6855 5407 5137 6913 6186 68 0 * * * * * * 6985 0 0 E 69 2773 * 2445 1217 * 4368 6372 * 6231 6524 * 5479 6810 4601 6061 4698 6534 5760 * * 69 13 6832 * 1585 585 * * 6985 1000 0 A 70 2497 * 2640 1371 * 5880 5588 6641 4633 5195 * 6456 * 3916 5601 5106 5985 5841 * * 70 0 * * * * * * 6985 0 0 A 71 994 * * * 5463 * * 3482 * 3560 6372 * 5466 * * * * 1908 * * 71 11 7093 * 1585 585 * * 6985 1000 0 Q 72 4463 * 3716 1943 * * 5267 4895 2916 4638 6698 6674 * 4431 2406 6331 * 4295 4228 6061 72 10 7113 * 0 * * * 6985 1000 0 A 73 1884 * 3693 2278 * * 5761 * 3439 * 6518 6287 * 3900 3735 3413 3959 6506 * * 73 11 6992 * 0 * * * 6985 1000 0 W 74 6569 * * * 1947 * 6431 2014 6526 2663 4618 * * 6110 3549 * 6052 3892 3820 6905 74 0 * * * * * * 6985 0 0 A 75 2548 * * * 4334 * * 2097 * 2067 4667 7105 * * 7093 5698 5768 2214 * * 75 0 * * * * * * 6985 0 0 D 76 2065 * 3858 2168 5541 6343 6508 * 2420 5752 5349 4052 * 4677 4409 4692 6698 * * * 76 0 * * * * * * 6985 0 0 A 77 2938 * 3037 2707 * 3016 5351 6511 3377 6231 * 2994 * 4396 5383 3402 4865 * * * 77 0 * * * * * * 6985 0 0 D 78 * * 232 3216 * * 6076 * * * * 6041 * * * 6552 * * * * 78 0 * * * * * * 6985 0 0 P 79 5274 6256 * 5988 * * * 3862 * * * * 246 * * * * 4904 * * 79 0 * * * * * * 6985 0 0 Y 80 4237 6201 * * 1786 6173 * 6545 * 3963 4419 6518 * * 6552 * 5947 6698 * 1118 80 0 * * * * * * 6985 0 0 V 81 2864 * * * 6360 6464 4766 3806 * 5460 * 4045 6674 5254 4826 * 4067 1701 4189 2696 81 0 * * * * * * 6985 0 0 A 82 3404 * 6287 4376 * * * 5079 2046 3512 * * 4855 3058 3402 * 2998 3174 * * 82 22 * 6062 * * * * 6985 0 0 A 83 1711 * 5008 2864 * 4088 3957 * 4696 5483 * 2933 * 4071 5525 3563 4938 6324 * * 83 34 * 5406 * * * 0 6897 0 1000 G 84 6297 * 5526 5464 * 461 5971 * 5244 * * 3612 * 5679 4406 5293 * * * * 84 48 6406 5561 0 * 1697 532 6845 1000 2070 V 85 4055 6107 6292 * 5764 6787 * 2577 6656 1576 * * * * * * 6482 1469 * * 85 127 * 3571 * * 0 * 6816 0 2465 Y 86 6022 * * * 2234 * * 4693 * 6186 5938 * * * 4131 * * 2429 1581 2985 86 260 3136 4284 1000 1000 0 * 6678 3230 3346 E 87 2117 * 2510 2321 * 5204 5989 6215 6086 5769 * * 6615 3498 3298 4442 4408 6535 * * 87 171 4503 3881 1000 1000 0 * 6787 2091 2268 H 88 4262 * 3955 3384 6475 4890 5296 6017 2710 6158 * 3085 5967 5363 3574 2221 5497 4151 * * 88 0 * * * * 0 * 6642 0 2882 V 89 3646 * * 5295 6323 * 5629 2362 * 4769 6013 * 6692 5688 6511 5226 4402 1712 4351 2765 89 18 6320 * 1000 1000 * * 6703 1000 0 S 90 4572 * 3060 1955 * 6309 5645 4858 4682 * 5997 6169 * 3836 3142 3921 3765 3038 * * 90 0 * * * * * * 6703 0 0 V 91 * * * * 5382 * * 1099 6479 3602 5549 * * * * * 5487 1427 * * 91 0 * * * * * * 6703 0 0 K 92 5864 * 5987 4053 5505 * 3141 4550 3033 4148 * 5628 * 4344 2280 * 3302 4422 6309 3130 92 0 * * * * * * 6703 0 0 P 93 4399 * * 2330 * 6284 6561 * 6139 * * * 1082 4395 2908 5406 5124 6535 * * 93 0 * * * * * * 6602 0 0 F 94 * 4309 * * 1500 * * * * 5793 5398 5919 * * * * 6448 * 976 5821 94 27 5727 * 0 * * * 6543 1000 0 K 95 6136 * 4176 5560 4748 * 5605 4007 2088 3491 * 1974 * * 2743 * 4026 * * * 95 40 * 5210 * * * * 6222 0 0 K 96 3610 3576 * 4935 * * * 5777 3489 5655 * 3348 2459 2944 3831 5317 5455 3516 4084 * 96 0 * * * * 0 * 6033 0 1000 V 97 2181 * * * * * * 4038 * 3882 4298 * * * * 4912 4912 906 * * 97 0 * * * * * * 5686 0 0 F 98 * * * * 157 * * * * * * * * * * * * * 4290 4257 98 0 * * 0 * * * 4903 0 0 //