BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (162 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0ABH6 Rod shape-determining protein mreD n=132 Tax=Ent... 310 7e-84 UniRef50_C4K6Y8 Rod shape-determining protein n=1 Tax=Candidatus... 214 6e-55 UniRef50_B5F9L8 Rod shape-determining protein MreD n=89 Tax=Gamm... 156 2e-37 UniRef50_A0KFA9 Rod shape-determining protein MreD n=3 Tax=Gamma... 147 1e-34 UniRef50_Q47VG6 Rod shape-determining protein MreD n=4 Tax=Alter... 141 8e-33 UniRef50_Q15ZH1 Rod shape-determining protein MreD n=4 Tax=Alter... 137 2e-31 UniRef50_C4L8L5 Rod shape-determining protein MreD n=1 Tax=Tolum... 133 2e-30 UniRef50_Q5QWE3 Rod shape-determining protein n=2 Tax=Idiomarina... 133 2e-30 UniRef50_Q7VRC2 Rod shape-determining protein MreD n=2 Tax=Candi... 127 1e-28 UniRef50_Q07WQ1 Rod shape-determining protein MreD n=21 Tax=Shew... 124 7e-28 UniRef50_C7R9G4 Rod shape-determining protein MreD n=1 Tax=Kangi... 117 2e-25 UniRef50_A6VWN4 Rod shape-determining protein MreD n=2 Tax=Marin... 115 4e-25 UniRef50_Q1ZG63 Hypothetical rod shape-determining protein MreD ... 110 1e-23 UniRef50_Q2BKP8 Rod shape-determining protein MreD n=2 Tax=Gamma... 109 2e-23 UniRef50_A1STZ6 Rod shape-determining protein MreD n=1 Tax=Psych... 109 3e-23 UniRef50_P44476 Rod shape-determining protein mreD n=32 Tax=Past... 106 3e-22 UniRef50_Q8D1V7 MreD protein n=1 Tax=Wigglesworthia glossinidia ... 104 8e-22 UniRef50_A7C6B4 Rod shape-determining protein MreD n=1 Tax=Beggi... 103 2e-21 UniRef50_Q1QVB9 Rod shape-determining protein MreD n=1 Tax=Chrom... 100 1e-20 UniRef50_C0N753 Rod shape-determining protein MreD n=1 Tax=Methy... 95 7e-19 UniRef50_B5JU59 Rod shape-determining protein MreD n=1 Tax=gamma... 93 3e-18 UniRef50_B7V018 Rod shape-determining protein MreD n=21 Tax=Pseu... 91 9e-18 UniRef50_A4BGL4 Rod shape-determining protein MreD n=1 Tax=Reine... 89 5e-17 UniRef50_A9N8Z0 Rod shape-determining protein MreD n=7 Tax=Coxie... 87 2e-16 UniRef50_A1WVS1 Rod shape-determining protein MreD n=2 Tax=Ectot... 86 5e-16 UniRef50_UPI00016994A6 Rod shape-determining protein MreD n=1 Ta... 85 8e-16 UniRef50_A4A5B4 Rod shape-determining protein MreD n=1 Tax=Congr... 84 1e-15 UniRef50_Q1GYC9 Rod shape-determining protein MreD n=3 Tax=Methy... 82 7e-15 UniRef50_C5SBR5 Rod shape-determining protein MreD n=1 Tax=Alloc... 81 1e-14 UniRef50_Q1MYL6 Rod shape-determining protein MreD n=1 Tax=Berma... 81 1e-14 UniRef50_B8GL91 Rod shape-determining protein MreD n=2 Tax=Thioa... 80 2e-14 UniRef50_A4BLX4 Rod shape-determining protein MreD n=1 Tax=Nitro... 78 8e-14 UniRef50_Q60CK4 Rod shape-determining protein MreD n=1 Tax=Methy... 78 9e-14 UniRef50_B7RTI7 Rod shape-determining protein MreD n=2 Tax=uncla... 78 1e-13 UniRef50_B8KR95 Rod shape-determining protein MreD n=1 Tax=gamma... 77 2e-13 UniRef50_Q1LU39 Rod shape-determining protein MreD n=1 Tax=Bauma... 76 4e-13 UniRef50_B2SMY7 Rod shape-determining protein MreD n=20 Tax=Xant... 75 7e-13 UniRef50_Q7NPY3 Rod shape-determining protein MreD n=2 Tax=Chrom... 72 7e-12 UniRef50_A0Z7H0 Rod shape-determining protein n=1 Tax=marine gam... 72 7e-12 UniRef50_C4GIM3 Putative uncharacterized protein n=1 Tax=Kingell... 70 3e-11 UniRef50_Q0VS68 Rod shape-determining protein MreD n=2 Tax=Alcan... 69 6e-11 UniRef50_Q0AFP8 Rod shape-determining protein MreD n=2 Tax=Nitro... 69 7e-11 UniRef50_Q2YC95 Rod shape-determining protein MreD n=1 Tax=Nitro... 67 1e-10 UniRef50_Q21FT2 Rod shape-determining protein MreD n=1 Tax=Sacch... 67 3e-10 UniRef50_C5BSY4 Rod shape-determining protein MreD n=1 Tax=Tered... 66 4e-10 UniRef50_A8PNB8 Rod shape-determining protein MreD n=1 Tax=Ricke... 65 8e-10 UniRef50_A1U482 Rod shape-determining protein MreD n=3 Tax=Marin... 64 2e-09 UniRef50_C6P2H4 Rod shape-determining protein MreD n=1 Tax=Sider... 62 4e-09 UniRef50_C6MDC7 Rod shape-determining protein MreD n=1 Tax=Nitro... 62 7e-09 UniRef50_A5IGA1 Rod shape determining protein MreD n=5 Tax=Legio... 61 1e-08 UniRef50_B3PC04 Putative rod shape-determining protein MreD n=1 ... 58 9e-08 UniRef50_C0DXR0 Putative uncharacterized protein n=1 Tax=Eikenel... 58 9e-08 UniRef50_C8PVZ5 Rod shape-determining protein MreD n=1 Tax=Enhyd... 57 1e-07 UniRef50_Q3SM35 Putative uncharacterized protein n=1 Tax=Thiobac... 56 4e-07 UniRef50_C1D5N3 MreD n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 54 1e-06 UniRef50_Q0KFF4 Rod shape-determining protein MreD n=12 Tax=Burk... 52 5e-06 UniRef50_C5TMH6 Rod shape-determining protein MreD n=5 Tax=Neiss... 52 6e-06 UniRef50_A1K1T9 Rod shape-determining protein n=4 Tax=Rhodocycla... 51 2e-05 UniRef50_C7RML3 Rod shape-determining protein MreD n=3 Tax=Betap... 50 2e-05 UniRef50_Q9RH81 Rod shape determining protein MreD (Fragment) n=... 50 3e-05 UniRef50_C7I0H6 Rod shape-determining protein MreD n=4 Tax=Burkh... 49 4e-05 UniRef50_D0L063 Rod shape-determining protein MreD n=1 Tax=Halot... 49 5e-05 UniRef50_B5EMQ8 Rod shape-determining protein MreD n=3 Tax=Acidi... 49 7e-05 UniRef50_C5V1V9 Rod shape-determining protein MreD n=1 Tax=Galli... 49 7e-05 UniRef50_Q1QDJ0 Rod shape-determining protein MreD n=2 Tax=Psych... 48 1e-04 UniRef50_A0L7I2 Rod shape-determining protein MreD n=1 Tax=Magne... 48 1e-04 UniRef50_Q2SBH0 Cell shape-determining protein n=1 Tax=Hahella c... 47 2e-04 UniRef50_Q31F49 Rod shape-determining protein MreD n=1 Tax=Thiom... 45 7e-04 UniRef50_A5WCI6 Putative uncharacterized protein n=1 Tax=Psychro... 45 7e-04 UniRef50_B0VS17 Rod shape-determining protein n=17 Tax=Acinetoba... 45 0.001 UniRef50_A9I0I9 Rod shape-determining protein MreD n=5 Tax=Borde... 44 0.001 UniRef50_Q1YU27 Rod shape-determining protein MreD n=1 Tax=gamma... 43 0.004 UniRef50_Q21RI3 Rod shape-determining protein MreD n=66 Tax=Burk... 42 0.008 UniRef50_A4T0H0 Rod shape-determining protein MreD n=2 Tax=Polyn... 40 0.028 UniRef50_C2D6Q5 Putative uncharacterized protein n=1 Tax=Atopobi... 40 0.030 >UniRef50_P0ABH6 Rod shape-determining protein mreD n=132 Tax=Enterobacteriaceae RepID=MRED_ECO57 Length = 162 Score = 310 bits (795), Expect = 7e-84, Method: Compositional matrix adjust. Identities = 162/162 (100%), Positives = 162/162 (100%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF Sbjct: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW Sbjct: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ Sbjct: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 >UniRef50_C4K6Y8 Rod shape-determining protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K6Y8_HAMD5 Length = 162 Score = 214 bits (546), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 97/162 (59%), Positives = 136/162 (83%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M+ Y+S+GRWVI+LSFLI ++LQIMPWP + +F+P+W+LLI +YW++ALPHRVN+GTGF Sbjct: 1 MSYYKSRGRWVIYLSFLIGIILQIMPWPQQIDMFQPSWLLLIFIYWVMALPHRVNLGTGF 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 ++G I DL+ GSTLG+ L MS+IAYLV +K+Q FRN+ALWQQ L V+LLS+++ I VF Sbjct: 61 ILGLITDLLLGSTLGIHSLGMSMIAYLVTIKFQTFRNMALWQQTLFVILLSIIMTITVFL 120 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 EFL+I+VSF +F ++++NG++WPW+FLLMRK R++F VQ Sbjct: 121 TEFLIIHVSFNTGIFSNALINGIVWPWLFLLMRKTRRKFLVQ 162 >UniRef50_B5F9L8 Rod shape-determining protein MreD n=89 Tax=Gammaproteobacteria RepID=B5F9L8_VIBFM Length = 163 Score = 156 bits (395), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 85/161 (52%), Positives = 120/161 (74%) Query: 2 ASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFV 61 +S+ +GR +IWLSFLIAL LQ PWP L V RP+W++L+ YW+LALPHRVNVGT V Sbjct: 3 SSHLMRGRVIIWLSFLIALTLQAAPWPGALEVLRPSWIILVTFYWVLALPHRVNVGTAMV 62 Query: 62 MGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWA 121 +G + DL+ G+TLG+R + M+I+ YLVA +++ RNLALWQQA + L+L+ I+ F Sbjct: 63 LGILWDLLLGTTLGIRGMTMAILVYLVAANFKVLRNLALWQQAAIFSGLTLLGKILEFMG 122 Query: 122 EFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 EFLV +VSF W+ V+N +LWPW+FLLMR+VR+ ++++ Sbjct: 123 EFLVHDVSFNAHFLWAGVLNFLLWPWLFLLMRRVRRHWSIR 163 >UniRef50_A0KFA9 Rod shape-determining protein MreD n=3 Tax=Gammaproteobacteria RepID=A0KFA9_AERHH Length = 161 Score = 147 bits (372), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 79/157 (50%), Positives = 112/157 (71%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 + GR IW+S L+AL L I+P P L FRP+W+ ++L+YW LALPHR NVGT +V G + Sbjct: 5 ASGRIWIWISILLALSLSILPLPFQLEPFRPDWLAMVLIYWALALPHRTNVGTAWVAGLL 64 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 LD++ GSTLGVR +AM+I YL A ++Q RN +LWQQAL++ LSLV + +FWAE L Sbjct: 65 LDVLLGSTLGVRAMAMAITTYLAAFQFQKIRNFSLWQQALIIGCLSLVGKVTIFWAEHLF 124 Query: 126 INVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 S FWS++ ++WPW+FL++RKVR++F ++ Sbjct: 125 SRASLNFAYFWSTLSTMLIWPWVFLVLRKVRRRFNIK 161 >UniRef50_Q47VG6 Rod shape-determining protein MreD n=4 Tax=Alteromonadales RepID=Q47VG6_COLP3 Length = 159 Score = 141 bits (355), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 68/157 (43%), Positives = 109/157 (69%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 S ++I+L+ LIAL+ I P P ++ FRP+WVL++L+YW LALP+++N+ T +VMG I Sbjct: 3 SNNGFIIFLTLLIALMASITPMPLSVDAFRPDWVLIVLVYWCLALPNKINIFTAWVMGFI 62 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 LD++ GS LGV AM++ Y+V + +Q RN ++WQQAL++ +LS ++VFW + + Sbjct: 63 LDVLLGSVLGVHACAMALSVYIVVVNFQKIRNFSVWQQALIIGVLSAQYHLVVFWLQRFL 122 Query: 126 INVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 +V F P + + VLWPW+FLL+R+VR+ F ++ Sbjct: 123 SDVVFLPNYLYPVITTIVLWPWVFLLLRRVRRHFRIE 159 >UniRef50_Q15ZH1 Rod shape-determining protein MreD n=4 Tax=Alteromonadales RepID=Q15ZH1_PSEA6 Length = 158 Score = 137 bits (344), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 67/148 (45%), Positives = 104/148 (70%) Query: 12 IWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISG 71 I LS ++AL+LQIMP P + +RP+WV L+L YW LALP RVNVG F++G +LD++ G Sbjct: 8 IGLSIIVALVLQIMPMPAIVEQYRPDWVFLVLGYWALALPERVNVGVAFIVGLVLDILLG 67 Query: 72 STLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFR 131 +++GV AMS+ +++A YQ RN ++WQQA+V+ +L + +++VFW L+ ++ F Sbjct: 68 TSIGVHSFAMSLSVFVLAANYQRLRNYSVWQQAVVIGILCALYNLVVFWLMHLLTDIYFM 127 Query: 132 PEVFWSSVVNGVLWPWIFLLMRKVRQQF 159 W + + V+WPWIF L+R+VR+QF Sbjct: 128 LTYMWPVITSMVIWPWIFWLLRRVRRQF 155 >UniRef50_C4L8L5 Rod shape-determining protein MreD n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L8L5_TOLAT Length = 163 Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 61/161 (37%), Positives = 111/161 (68%) Query: 2 ASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFV 61 S G+ I+L+ ++A++L ++P P + +FRP+WV L++LYW++ALPH +NV + ++ Sbjct: 3 GSLTGHGKGSIYLTLIVAIILTMVPLPVAIDMFRPDWVALVVLYWVIALPHHLNVVSAWI 62 Query: 62 MGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWA 121 +G I+D++ GSTLG+ L+M++I+ +VA +YQ RN ++WQQALV+ L V +++FW Sbjct: 63 VGLIMDILLGSTLGIHALSMAVISCVVAAQYQKIRNFSVWQQALVMGSLIFVGQLLIFWV 122 Query: 122 EFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 E L + W+S+ + +LWP ++L +R +R++F ++ Sbjct: 123 EHLFASPRLNTRFVWASLSSTLLWPSVYLFLRYIRRRFNIR 163 >UniRef50_Q5QWE3 Rod shape-determining protein n=2 Tax=Idiomarina RepID=Q5QWE3_IDILO Length = 161 Score = 133 bits (335), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 65/148 (43%), Positives = 94/148 (63%) Query: 14 LSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGST 73 ++++IAL L +MP P FRP+W L++LYWI+ALPHRVN+GT V+G + D++ GS Sbjct: 13 ITYIIALTLMVMPMPAAFDTFRPDWPTLVMLYWIIALPHRVNMGTALVLGVLSDILLGSI 72 Query: 74 LGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPE 133 +GV L M ++ Y A +Q RN AL QQALV+ +L + +VF A + + F Sbjct: 73 VGVHALGMVVVTYFAARHFQRIRNFALIQQALVIAVLIFIKRFVVFEANVFLHDAEFTFS 132 Query: 134 VFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 FW + + V W W+F L+RKVR+QF V Sbjct: 133 YFWPVLTSAVFWLWVFPLLRKVRRQFGV 160 >UniRef50_Q7VRC2 Rod shape-determining protein MreD n=2 Tax=Candidatus Blochmannia RepID=Q7VRC2_BLOFL Length = 162 Score = 127 bits (320), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 57/147 (38%), Positives = 103/147 (70%) Query: 12 IWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISG 71 I+ SF +A++LQ + + +P+W +++L+YWI+ +P+++N+GTGF +G ILD IS Sbjct: 12 IYCSFAVAIILQYVLFFSITWYLQPSWTMMLLIYWIVLIPNKINIGTGFFLGLILDCISC 71 Query: 72 STLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFR 131 STLG++ L+MSII+YL K LFR+ +WQQ++ ++L S + I F +FL+ +VS+ Sbjct: 72 STLGIQTLSMSIISYLTIRKIYLFRHTYVWQQSIFIVLFSFINQNIKFLIQFLMFSVSYS 131 Query: 132 PEVFWSSVVNGVLWPWIFLLMRKVRQQ 158 P++F++ +++G++WP + L+ K+ Sbjct: 132 PKIFYNCILDGIMWPVLIFLIHKINNS 158 >UniRef50_Q07WQ1 Rod shape-determining protein MreD n=21 Tax=Shewanella RepID=Q07WQ1_SHEFN Length = 163 Score = 124 bits (312), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 57/163 (34%), Positives = 110/163 (67%), Gaps = 1/163 (0%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M+++ + GR V+WL+ I ++ QIMP P + +RP+W+L++++YW +ALPHR ++ T + Sbjct: 1 MSAHIANGRLVVWLTLFIGMMFQIMPLPKMVEAWRPDWLLMVMMYWAMALPHRYSILTAW 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 ++G +LD++ G+ LG+R LA+S++ Y+V L Q RN WQQ+L+V + ++FW Sbjct: 61 LLGVMLDVLLGAHLGIRSLALSLVIYIVVLLCQQLRNYPRWQQSLLVACFICIYHAVIFW 120 Query: 121 AEFLVINVS-FRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 +F+V+ + F ++F ++ + +W W+F ++R +R+ + V+ Sbjct: 121 VQFVVVGAAPFNVDMFLPAISSLFIWWWVFWVLRNMRRHYKVR 163 >UniRef50_C7R9G4 Rod shape-determining protein MreD n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R9G4_KANKD Length = 165 Score = 117 bits (292), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 103/165 (62%), Gaps = 8/165 (4%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M + G WVI LS +I ++L I P P+ FRP++ LI YW++ALPHR+ + F Sbjct: 4 MKNEVKHGTWVIILSLIIGMILDIFPLPETWQPFRPSFTFLIFSYWVIALPHRIGLLWAF 63 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 + G LD + G+TLG+ +++++ +++ L +Q R LW+QAL ++ LS++ IV W Sbjct: 64 ITGLALDALLGTTLGLHCFSLAVLTFILQLNHQRLRLFPLWKQALTLIFLSVIYFAIVLW 123 Query: 121 AEFLVINVSFRPEV---FW-SSVVNGVLWPWIFLLMRKVRQQFAV 161 + ++ +PE +W +++ NG+LWPW+F+L+R +R+ F V Sbjct: 124 ----LARLTGKPESDSWYWIATLTNGLLWPWLFVLLRDIRRYFHV 164 >UniRef50_A6VWN4 Rod shape-determining protein MreD n=2 Tax=Marinomonas RepID=A6VWN4_MARMS Length = 157 Score = 115 bits (289), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 57/152 (37%), Positives = 94/152 (61%) Query: 11 VIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLIS 70 V ++ L AL+L+ MP+P+ L+ FRP W LL++LYW++ALP RV VG + +G ++DL+ Sbjct: 6 VFCITLLTALMLEAMPFPEELVWFRPEWALLVILYWVIALPFRVGVGLAWFLGLMVDLLQ 65 Query: 71 GSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSF 130 G +G L IIAY A+ Y+ R WQQ + LL + ++ FW + + + Sbjct: 66 GGIIGQHSLTYVIIAYTCAVFYKRLRMYHRWQQGFFICLLVSINQLLDFWIDHYLGHAEP 125 Query: 131 RPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 +F +V+ G+LWPW F+++R VR+ +A++ Sbjct: 126 TLMIFMPAVITGLLWPWSFIILRSVRRIYAIR 157 >UniRef50_Q1ZG63 Hypothetical rod shape-determining protein MreD n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZG63_9GAMM Length = 157 Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 55/151 (36%), Positives = 90/151 (59%) Query: 11 VIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLIS 70 +I+++F +ALL I P P L FRP+W++LI+ YW+LA P R+ + F +G ILD++ Sbjct: 6 IIYITFFVALLCAIFPLPIFLNAFRPDWMILIIFYWVLATPQRIGIVHAFFIGLILDILL 65 Query: 71 GSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSF 130 GS LG+ L S++AY V + +Q R L Q L++ + +L + + ++W ++ Sbjct: 66 GSMLGMHALLFSLLAYFVCVDFQRIRYFTLVQTTLLIGIAALCIKLSLYWIASTQQDILL 125 Query: 131 RPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 FWS + ++WPW FL +R VR +F V Sbjct: 126 HKSYFWSIFSSMLIWPWFFLFLRMVRIRFKV 156 >UniRef50_Q2BKP8 Rod shape-determining protein MreD n=2 Tax=Gammaproteobacteria RepID=Q2BKP8_9GAMM Length = 166 Score = 109 bits (273), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 59/160 (36%), Positives = 98/160 (61%) Query: 3 SYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVM 62 + + G ++I +FLI L+L +P P + RP WV +IL+YW++ALPHRV +G F + Sbjct: 7 AAQGGGGFIILGTFLIGLMLSQIPLPYFIEWARPEWVAMILIYWVMALPHRVGMGMAFFL 66 Query: 63 GAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAE 122 G +LD+I GS LG+ L+++ IA+L L +Q R L QQA++VM+L + ++ W + Sbjct: 67 GLLLDVIKGSVLGLNALSLTTIAFLTLLLHQRLRMFPLIQQAMMVMVLVGINQLLFHWMQ 126 Query: 123 FLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 +V+G+LWPW+F+++R VR+ F ++ Sbjct: 127 AFTGFTGDSLIFLLPCLVSGILWPWLFVILRGVRRFFRIR 166 >UniRef50_A1STZ6 Rod shape-determining protein MreD n=1 Tax=Psychromonas ingrahamii 37 RepID=A1STZ6_PSYIN Length = 133 Score = 109 bits (273), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 53/128 (41%), Positives = 82/128 (64%) Query: 34 FRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQ 93 FRP+W++LI+ YW+LALPHRV++ F++G + DL+ GSTLG+ L S +AY+V YQ Sbjct: 5 FRPDWMILIIFYWVLALPHRVSIVHAFILGVVFDLLLGSTLGMHALLFSFLAYIVITNYQ 64 Query: 94 LFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMR 153 LFR L Q L+V L SL+ + ++ + ++ FWS + ++WPW FL +R Sbjct: 65 LFRYFTLVQTTLLVGLYSLLSKLALYLMASSLQDIILHQSYFWSVFTSMLVWPWFFLFLR 124 Query: 154 KVRQQFAV 161 +R++F V Sbjct: 125 FIRRRFKV 132 >UniRef50_P44476 Rod shape-determining protein mreD n=32 Tax=Pasteurellaceae RepID=MRED_HAEIN Length = 162 Score = 106 bits (264), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 60/143 (41%), Positives = 99/143 (69%) Query: 16 FLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLG 75 F+IA +L++ PWP + +P W++L+LLYW+LA+P++V++G F++G DLI GSTLG Sbjct: 16 FVIAFVLELAPWPVGFQMLKPAWLVLVLLYWVLAIPNKVSIGWSFLLGLTWDLILGSTLG 75 Query: 76 VRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVF 135 V L +S Y++A Y + RNL+LW Q+L+V+L ++ +++F EF + F + Sbjct: 76 VHALVLSTSMYIIAKNYLILRNLSLWFQSLLVVLFVFIIRLLIFLVEFSLHTAFFHWQAI 135 Query: 136 WSSVVNGVLWPWIFLLMRKVRQQ 158 + +G+LWPW+FLLMRK+R++ Sbjct: 136 LGAFASGLLWPWVFLLMRKIRRK 158 >UniRef50_Q8D1V7 MreD protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D1V7_WIGBR Length = 168 Score = 104 bits (260), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 51/152 (33%), Positives = 96/152 (63%) Query: 10 WVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLI 69 ++I+ FLI+L+LQI+ WP N + +P+WV +I +L P ++N+GTGF++G ILDL Sbjct: 10 FIIYSLFLISLILQIISWPQNFNLLKPSWVYIIFSCLLLIYPEKINIGTGFILGLILDLH 69 Query: 70 SGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVS 129 GSTLG+ +++S +AYL+ + + F +L++Q+L + +V + + + ++ N Sbjct: 70 LGSTLGMHSISISFLAYLILINIKYFYKTSLFKQSLYISFFISIVKLSILIIQLVISNTL 129 Query: 130 FRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 + F + +++ ++WPWIF L++ + F V Sbjct: 130 LQINFFENILIDIIMWPWIFSLIKNILCYFNV 161 >UniRef50_A7C6B4 Rod shape-determining protein MreD n=1 Tax=Beggiatoa sp. PS RepID=A7C6B4_9GAMM Length = 163 Score = 103 bits (256), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 63/171 (36%), Positives = 101/171 (59%), Gaps = 19/171 (11%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M+S R G WVI LSF+++ +L I+P P +++RP+WV L+L+YW +A+P RV V TG+ Sbjct: 1 MSSERHHGGWVIILSFIVSFMLAIIPLPAWAVLWRPDWVALVLIYWCIAVPQRVGVATGW 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVM-LLSLVVDIIVF 119 +G I D++ + LG L++ I Y+ ++ R LWQQA+ V LLS I Sbjct: 61 FVGVIYDVLKDTLLGQNALSLCFIGYVSVKWHRQVRLFPLWQQAIGVFGLLS-----ISH 115 Query: 120 WAEFLV---------INVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 W E L+ + SF +VF ++ +LWPW+F+++R +R+ + V Sbjct: 116 WIEALIYKNMLGYSLLTGSFISQVF----ISMILWPWVFVILRDMRRTYRV 162 >UniRef50_Q1QVB9 Rod shape-determining protein MreD n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QVB9_CHRSD Length = 159 Score = 100 bits (250), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 60/157 (38%), Positives = 95/157 (60%) Query: 5 RSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGA 64 R G IWL+ +I+L LQ+MP PD +++RPNW+ L L YW + P RV V GFV G Sbjct: 2 RLPGLIAIWLTLVISLCLQVMPLPDAWLMWRPNWLGLALAYWCVTAPQRVGVFHGFVCGL 61 Query: 65 ILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFL 124 +LDLI G+ LG L +S++ YL L YQ R ++WQQA+++ +L ++ ++ W + Sbjct: 62 LLDLIEGTPLGQNALTLSLLTYLCLLLYQRLRAYSIWQQAVMLFVLLGLIQLVEQWLRTI 121 Query: 125 VINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 VS +++ G LWPW+F +M+ +R++ + Sbjct: 122 FGPVSIHLAFLLPALIGGALWPWLFTMMQVLRRRLGI 158 >UniRef50_C0N753 Rod shape-determining protein MreD n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N753_9GAMM Length = 159 Score = 95.1 bits (235), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 58/165 (35%), Positives = 96/165 (58%), Gaps = 12/165 (7%) Query: 2 ASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFV 61 + S+ VI L+ ++A+LL ++P P+ FRP WV+L L+YW +ALPHRV++G G++ Sbjct: 3 TTAESRNGVVIILTLIVAMLLMLVPLPETARYFRPEWVVLTLVYWAMALPHRVSIGVGWL 62 Query: 62 MGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWA 121 +G ++D+ G TLG+ + + YL+A + R LWQQAL ++ + +VV Sbjct: 63 VGLLMDVTMGGTLGIMAFSYAFAVYLIARFHLQLRQYPLWQQALTILSVVVVV------- 115 Query: 122 EFLVINVSFRPEVFW----SSVVNGVLWPWIFLLMRKVRQQFAVQ 162 LV V+ + E W + + +LWP +F +RK+R+ F V Sbjct: 116 -HLVSVVTSKSESTWLIWMPVLTSTLLWPVMFATLRKIRRTFQVS 159 >UniRef50_B5JU59 Rod shape-determining protein MreD n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JU59_9GAMM Length = 155 Score = 92.8 bits (229), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 52/145 (35%), Positives = 88/145 (60%), Gaps = 1/145 (0%) Query: 15 SFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTL 74 + ++A++ ++P P+ FRP+ V L+L+YW LA P ++ + TGF MG +LD++ GS L Sbjct: 8 TLVLAVIFTLVPLPETAAWFRPDIVALVLMYWWLAHPEKIGIYTGFFMGLLLDVMQGSLL 67 Query: 75 GVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEV 134 GV + IIA++ YQ R L L QQAL+V + L+ I FW + I + Sbjct: 68 GVHGCGLVIIAWIFLKNYQRIRVLPLVQQALIVFFVLLIKYFIGFWVDNHRIQGFSGTLL 127 Query: 135 FWSSVVNG-VLWPWIFLLMRKVRQQ 158 +++ + G +LWPW+F+ +R +R++ Sbjct: 128 YFAPCLTGAILWPWLFVTLRDLRRR 152 >UniRef50_B7V018 Rod shape-determining protein MreD n=21 Tax=Pseudomonadaceae RepID=B7V018_PSEA8 Length = 164 Score = 91.3 bits (225), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 53/161 (32%), Positives = 90/161 (55%) Query: 2 ASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFV 61 A+ S WVIWLS L+ L+L + P P + RP W+ ++L YW+L LP RV + T ++ Sbjct: 4 ATQGSNNVWVIWLSLLVGLVLAVAPMPTFTEIGRPLWLAMLLTYWVLLLPERVGMVTAWL 63 Query: 62 MGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWA 121 +G D++ G+ LG L + +I +LV +Q R WQQ LV++++ + ++ W Sbjct: 64 LGLAQDVLYGNLLGQNALILGLITFLVLSLHQRLRMFPAWQQCLVLVVVYGLAQLLQLWL 123 Query: 122 EFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 L N ++V+ +LWPW++ L++ VR + V+ Sbjct: 124 NALTGNRPPTLTFLLPALVSALLWPWVYALLQFVRLRLNVR 164 >UniRef50_A4BGL4 Rod shape-determining protein MreD n=1 Tax=Reinekea blandensis MED297 RepID=A4BGL4_9GAMM Length = 161 Score = 89.0 bits (219), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 50/162 (30%), Positives = 89/162 (54%), Gaps = 1/162 (0%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M G W+I ++F + L +P + RP+WV +++++W+L LP R + F Sbjct: 1 MKQKPPHGLWLIIITFFVGFFLAAIPM-GRFEIARPDWVGMLIIFWVLVLPERFGIFVSF 59 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 +G + D ++G+TLG+ S +AY V L + R L QQA+VV L+ V I+ W Sbjct: 60 GVGILFDTLAGTTLGLYAFVYSGLAYTVLLLHARLRMYPLGQQAMVVFLILGVTHIVAQW 119 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + +++V W ++ + V+WPW++ L+R ++ +F VQ Sbjct: 120 LKVWLMSVVSGELHIWPALTSAVVWPWVYGLLRTLQIKFRVQ 161 >UniRef50_A9N8Z0 Rod shape-determining protein MreD n=7 Tax=Coxiella burnetii RepID=A9N8Z0_COXBR Length = 162 Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 46/147 (31%), Positives = 88/147 (59%), Gaps = 2/147 (1%) Query: 14 LSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGST 73 L+ ++A++L I+P P + ++P W+ ++LL+W++ALP+RV +G F+ G + DL+SG+ Sbjct: 14 LTLIMAMMLTILPLPAWAVWYQPAWIFMVLLFWMIALPYRVGIGAAFIWGLLFDLLSGTI 73 Query: 74 LGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPE 133 LG L +IIAY + R+L WQQ ++V + + V + +W + + S Sbjct: 74 LGQHALIFTIIAYFIIRFQTPLRSLPNWQQMILVFIATAVYLALQYWIMAMA-DASPETA 132 Query: 134 VFWSSVVNGV-LWPWIFLLMRKVRQQF 159 +W +++ LWPW+ +L++ + +F Sbjct: 133 KYWLPLMSTTLLWPWVRVLLKDYQSRF 159 >UniRef50_A1WVS1 Rod shape-determining protein MreD n=2 Tax=Ectothiorhodospiraceae RepID=A1WVS1_HALHL Length = 163 Score = 85.9 bits (211), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 70/167 (41%), Positives = 101/167 (60%), Gaps = 9/167 (5%) Query: 1 MASYRSQ-GRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTG 59 M +R + G +I LSF+IAL+L I+P P FRP W LILLYW LALP RV VG G Sbjct: 1 MTGHRPRNGGGIILLSFIIALMLTIVPMPGWAQEFRPEWTALILLYWGLALPERVGVGVG 60 Query: 60 FVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVF 119 +++G D + G+ LG LA ++IA+L +Q R + +WQQA+VV+ L +V ++VF Sbjct: 61 WLVGLFQDALLGTLLGQHALAFALIAFLALRLHQHLRLVPVWQQAVVVLGLLVVAQLVVF 120 Query: 120 WAEFLVINVSFRPEVFWSS----VVNGVLWPWIFLLMRKVRQQFAVQ 162 W + + RP W + +V +WP +F +MR VR++F VQ Sbjct: 121 W----INGIIGRPAPEWQAWAAILVGAAIWPLVFHIMRGVRRRFQVQ 163 >UniRef50_UPI00016994A6 Rod shape-determining protein MreD n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI00016994A6 Length = 106 Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 43/91 (47%), Positives = 61/91 (67%), Gaps = 1/91 (1%) Query: 7 QGR-WVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 QGR ++ L+ +L +MP PD FRP WV LIL+YW +ALP RVNVGTG++ G + Sbjct: 6 QGRLYIAHLTLAFGFVLAVMPMPDWASNFRPQWVTLILIYWCMALPERVNVGTGWLAGLL 65 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFR 96 LD++SGS LG LA++++++L YQ R Sbjct: 66 LDVLSGSMLGQHALALAVVSFLTLNIYQRVR 96 >UniRef50_A4A5B4 Rod shape-determining protein MreD n=1 Tax=Congregibacter litoralis KT71 RepID=A4A5B4_9GAMM Length = 161 Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 47/122 (38%), Positives = 74/122 (60%) Query: 3 SYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVM 62 S R WVI S L A +L ++P L+ +RP W+LL+L+YW +ALPHRV + T V+ Sbjct: 2 SERMNAYWVILASLLFAAVLAVIPLTRALLWWRPEWILLVLVYWTIALPHRVGLVTALVV 61 Query: 63 GAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAE 122 G +D++ G+ +G +L++S++ L L YQ R L QQ+ V+ LL+ + +I W + Sbjct: 62 GLFVDVMEGAVIGQNMLSLSVVVTLAGLMYQRLRVFTLVQQSSVIFLLAGLHQLITQWLQ 121 Query: 123 FL 124 L Sbjct: 122 GL 123 >UniRef50_Q1GYC9 Rod shape-determining protein MreD n=3 Tax=Methylophilaceae RepID=Q1GYC9_METFK Length = 159 Score = 81.6 bits (200), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 49/110 (44%), Positives = 68/110 (61%), Gaps = 6/110 (5%) Query: 12 IWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISG 71 ++LS L+ALL+QI+PW +L+ RP ++LL +LYW L PH N+GT + G ++DL SG Sbjct: 9 VYLSLLVALLMQILPWSGSLLTIRPEFLLLTVLYWTLRAPHLCNIGTAWFAGLMMDLASG 68 Query: 72 STLGVRVLAMSIIAYLVALKYQLFRNLAL---WQQALVVMLLSLVVDIIV 118 G LA S ++ A+ YQ R LAL WQQA V LL L+ +I Sbjct: 69 GLFGQFALAYSAASFF-AVSYQ--RRLALFNIWQQAGYVFLLLLLSQVIT 115 >UniRef50_C5SBR5 Rod shape-determining protein MreD n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SBR5_CHRVI Length = 172 Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 53/149 (35%), Positives = 81/149 (54%), Gaps = 9/149 (6%) Query: 3 SYRS-QGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFV 61 SY+ Q W I LS +A+ L I+P D +RP W +L +L+W A P RV + TGFV Sbjct: 12 SYKPRQPFWPIALSLTLAMYLTILPLSDWPWDYRPPWTVLAILFWCFATPRRVGIFTGFV 71 Query: 62 MGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWA 121 +G +LD+++G+ LG L++S+ AYL + R WQQA V L+ L ++ W Sbjct: 72 VGLMLDVLTGALLGQHALSLSVTAYLALVLRPRIRIFPPWQQAFFVALILLTERLLTLW- 130 Query: 122 EFLVINVSFRPE---VFW-SSVVNGVLWP 146 +I + +P +W S++V WP Sbjct: 131 ---IIGATGQPMPALTYWISALVGLAFWP 156 >UniRef50_Q1MYL6 Rod shape-determining protein MreD n=1 Tax=Bermanella marisrubri RepID=Q1MYL6_9GAMM Length = 155 Score = 80.9 bits (198), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 48/149 (32%), Positives = 82/149 (55%), Gaps = 1/149 (0%) Query: 11 VIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLIS 70 VI +F +A +L ++P+P + RP WV + L++W + P R + GF MG + D++ Sbjct: 6 VILPTFFLAFVLSVLPFPRLIDFIRPEWVAMTLIFWCVLSPGRAGIFLGFFMGLLFDVLH 65 Query: 71 GSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSF 130 G LG LA+S++ YL AL R QQ+ +V ++ + ++ FW E L + V Sbjct: 66 GQLLGQSALALSVLGYLCALMQSRMRIYNPLQQSFMVFVMVGLYLLMSFWIESL-MGVDR 124 Query: 131 RPEVFWSSVVNGVLWPWIFLLMRKVRQQF 159 + + W SV + ++WP + L+ +RQ F Sbjct: 125 KTALLWPSVGSALIWPLWYNLLFAIRQFF 153 >UniRef50_B8GL91 Rod shape-determining protein MreD n=2 Tax=Thioalkalivibrio RepID=B8GL91_THISH Length = 163 Score = 80.5 bits (197), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 57/153 (37%), Positives = 93/153 (60%), Gaps = 2/153 (1%) Query: 10 WVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLI 69 W I L+F++AL L ++P PD +RP W+ + L+YW +ALP R+ VG G+ +G +LD Sbjct: 9 WAIPLTFIVALALTVVPLPDWAAPWRPQWLAMTLIYWSMALPRRIGVGLGWFLGLLLDAA 68 Query: 70 SGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVS 129 +G+ LG L ++IAYL +Q R LWQQAL V L + ++V W + Sbjct: 69 TGALLGQHALGFALIAYLSIRMHQRVRVFPLWQQALTVGGLLALHLLLVLWILGMTGRAP 128 Query: 130 FRPEVFWSSVVNG-VLWPWIFLLMRKVRQQFAV 161 ++W+ +V+ +LWPW+F+L+R VR+++ + Sbjct: 129 GT-WLYWAPLVSSMILWPWLFVLLRDVRRRWCL 160 >UniRef50_A4BLX4 Rod shape-determining protein MreD n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BLX4_9GAMM Length = 134 Score = 78.2 bits (191), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 48/128 (37%), Positives = 74/128 (57%) Query: 35 RPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQL 94 RP W LIL+YW +ALP RV V + +G + D++ G LG LA S+ A+L ++ Sbjct: 7 RPEWTALILIYWCMALPQRVGVTVAWTVGLLQDVLQGFLLGAHALAFSVAAFLTLKLHRQ 66 Query: 95 FRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRK 154 R LWQQAL +LL LV+ +I+ W L+ + + + ++ LWP +FL +R Sbjct: 67 IRVFPLWQQALSTLLLLLVIRLILLWTRGLIGHPGVDWQYWLPALTGAALWPPLFLGLRA 126 Query: 155 VRQQFAVQ 162 VR++F V+ Sbjct: 127 VRRRFQVR 134 >UniRef50_Q60CK4 Rod shape-determining protein MreD n=1 Tax=Methylococcus capsulatus RepID=Q60CK4_METCA Length = 163 Score = 78.2 bits (191), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 47/160 (29%), Positives = 95/160 (59%), Gaps = 2/160 (1%) Query: 3 SYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVM 62 + R+ R +I+ S A+ ++I+P P + ++ P+W+LL+L+YW + P RV VGT ++ Sbjct: 4 TRRTPSRILIFASLAAAMAMRIVPLPQDWALWNPDWILLVLIYWAVMAPDRVGVGTAWLT 63 Query: 63 GAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAE 122 G + D ++G LG LA S++ Y+ ++ FR ++ QQ L V+LL + ++ W Sbjct: 64 GLLADALTGRLLGQDALAYSVVIYVGVRFHRRFRVYSMVQQVLAVVLLLGLGLLLTLWTR 123 Query: 123 FLVINVSFRPEVFW-SSVVNGVLWPWIFLLMRKVRQQFAV 161 + ++ PE +W +++ G++WPW+ + + +R+++ Sbjct: 124 H-IRGLASAPEGYWFAALSGGLVWPWVRVALDGLRRRYGA 162 >UniRef50_B7RTI7 Rod shape-determining protein MreD n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=B7RTI7_9GAMM Length = 162 Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 49/148 (33%), Positives = 82/148 (55%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M W++ SF AL+L ++P+P L RP WVLL+L+YW++ALP RV + T Sbjct: 1 MVDQGPNAYWLVLASFFCALILAVLPFPHWLAWGRPEWVLLVLVYWVIALPQRVGLITAL 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 ++G +LD++ G+ +G A+ ++ L L YQ R +L QQA +V +L+ + +I W Sbjct: 61 LLGLMLDVVEGAVIGQNAFALVVVTLLALLLYQRLRVFSLAQQAAIVFVLAGLNQMICQW 120 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWI 148 + L S + + +LWP++ Sbjct: 121 VQNLEGAGSTTLMFLLPAFSSALLWPFV 148 >UniRef50_B8KR95 Rod shape-determining protein MreD n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KR95_9GAMM Length = 160 Score = 77.4 bits (189), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 51/157 (32%), Positives = 82/157 (52%) Query: 5 RSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGA 64 R+Q WVI ++ ++ALLL P P FRP LL+L YW+LALP RV + + V+G Sbjct: 3 RAQAVWVIPVTLMVALLLHAAPLPFEWRWFRPELPLLVLFYWVLALPQRVGLLSAAVIGI 62 Query: 65 ILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFL 124 +DL+ GS LG L + + ++ YQ R L+QQ L++ LL + + W Sbjct: 63 GIDLLEGSALGGLALGLVVSTLVLLFTYQRIRQFNLFQQCLLMGLLIALALTVENWVHKF 122 Query: 125 VINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 + + + W ++V+ W I +R +R+ + V Sbjct: 123 MALPTGGMQFLWPALVSMPFWAVIRKPLRGLRRYYGV 159 >UniRef50_Q1LU39 Rod shape-determining protein MreD n=1 Tax=Baumannia cicadellinicola str. Hc (Homalodisca coagulata) RepID=Q1LU39_BAUCH Length = 158 Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 55/156 (35%), Positives = 99/156 (63%), Gaps = 1/156 (0%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLI-VFRPNWVLLILLYWILALPHRVNVGTG 59 M + Q WVIWL F +++ + + I +F P+W+ L+L+YW++ +R++VG Sbjct: 1 MTRFYRQYNWVIWLFFFFIIIILPIIPCNKPINLFWPSWLNLLLIYWVMVRQNRIHVGIV 60 Query: 60 FVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVF 119 F++ I+DLI GS LG+ L +SII Y+V +K + FRN ++QQ ++++L S + IV Sbjct: 61 FLISIIVDLIRGSKLGIHPLLISIIIYIVFIKIKFFRNKNIYQQVIIIILASAIAKFIVN 120 Query: 120 WAEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKV 155 +L+++ S++ + SS+V+G+ WP + +MRK+ Sbjct: 121 ITNYLLLSNSWQTGILSSSIVDGIAWPLVLCIMRKI 156 >UniRef50_B2SMY7 Rod shape-determining protein MreD n=20 Tax=Xanthomonadaceae RepID=B2SMY7_XANOP Length = 161 Score = 75.1 bits (183), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 51/153 (33%), Positives = 83/153 (54%), Gaps = 2/153 (1%) Query: 5 RSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGA 64 R + W++ S IAL+L ++P P + RP W+ L+L YW++ P RV +G FV G Sbjct: 3 RMRNTWILPASIFIALVLGLLPLPTVVQPLRPYWLALVLAYWVIEEPDRVGLGLAFVAGV 62 Query: 65 ILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFL 124 + DL+ G LG + L + I+ +++ R + QQAL + L L+ D IV A L Sbjct: 63 LADLLYGGLLGEQALRLVIMTFILQRFRARMRFFPMSQQALAIGGL-LLNDRIVSSAVHL 121 Query: 125 VINVSFRP-EVFWSSVVNGVLWPWIFLLMRKVR 156 + P +W+ ++ VLWP +F+++ VR Sbjct: 122 AVGEPTLPWSYWWAPLLGIVLWPPLFVVLDAVR 154 >UniRef50_Q7NPY3 Rod shape-determining protein MreD n=2 Tax=Chromobacterium group RepID=Q7NPY3_CHRVO Length = 167 Score = 72.0 bits (175), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 46/144 (31%), Positives = 77/144 (53%) Query: 9 RWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDL 68 R I +F+IA+L++++P P + P+++ L++LYW++ P RVN+G F+MG I D+ Sbjct: 15 RRFILTTFVIAVLIELVPLPHGSTRWLPDFIGLLILYWVINQPRRVNIGIAFLMGIIADV 74 Query: 69 ISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINV 128 + G LA S+ A+L + + L QQALVV+ L L +I+ L + Sbjct: 75 STAGLFGQHALAYSVTAFLALSRQRQLVMFNLGQQALVVLGLMLTNQLIMVVVRMLTGSA 134 Query: 129 SFRPEVFWSSVVNGVLWPWIFLLM 152 F ++ +LWP + LM Sbjct: 135 FVGWSYFLPPLIGALLWPLLTKLM 158 >UniRef50_A0Z7H0 Rod shape-determining protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z7H0_9GAMM Length = 160 Score = 71.6 bits (174), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 43/112 (38%), Positives = 64/112 (57%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 +G WVI S LIALLL +P P + + P+W LL L YW+LALP+RV V + V+G + Sbjct: 4 ERGSWVIVGSILIALLLVAIPVPVSWREYTPDWPLLFLFYWVLALPNRVGVLSACVVGIL 63 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDII 117 DL+ GS G + + ++ + YQ R +Q LV+ LL +V ++ Sbjct: 64 TDLLDGSPAGATAIGAVMAVLVILVSYQRIRQFDGLKQGLVMALLISLVHLV 115 >UniRef50_C4GIM3 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GIM3_9NEIS Length = 167 Score = 70.1 bits (170), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 46/146 (31%), Positives = 82/146 (56%), Gaps = 6/146 (4%) Query: 4 YRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMG 63 Y + +I++SFL+A+L+ +P +L + P + L+L+YWI+ P V++GT F++G Sbjct: 8 YSKIQKRLIYISFLLAILIDFIPLSGSLFHWLPEFTALMLMYWIINRPQNVDIGTAFILG 67 Query: 64 AILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQ---QALVVMLLSLVVDIIVFW 120 ++D+ + ++LG LA I AY+V Q R + L+ QA+V+ L ++I+ Sbjct: 68 LLMDIGTNASLGGHALAYVIAAYIVI---QNRRQIVLYHYGVQAVVIFAALLCSEMILTV 124 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWP 146 + + + VF S VV +LWP Sbjct: 125 VRWRYTHHFYGWTVFLSPVVGALLWP 150 >UniRef50_Q0VS68 Rod shape-determining protein MreD n=2 Tax=Alcanivorax RepID=Q0VS68_ALCBS Length = 163 Score = 68.9 bits (167), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 55/163 (33%), Positives = 95/163 (58%), Gaps = 1/163 (0%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M S R G VI ++ L+A LL+++P P ++ RP W+LL+L+YW+L LPHR+ V GF Sbjct: 1 MVSDRPAGTGVIIVTLLLAALLEVIPLPASIDWIRPEWMLLVLVYWVLVLPHRIGVLWGF 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 +G D++ G+TLG LA ++ A+++ Y+ R QQ V+ LL V ++ F Sbjct: 61 FVGLYHDVLVGTTLGQWGLATALGAFVMLAAYKRMRVFNGLQQCAVIFLLVGTVSLLAFL 120 Query: 121 AEFLVINVSFRP-EVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + V + P + +SSV + ++W + ++R ++ +F V+ Sbjct: 121 VQESVGRTLYPPYTILYSSVSSALVWRPVCAVLRWIQLRFLVR 163 >UniRef50_Q0AFP8 Rod shape-determining protein MreD n=2 Tax=Nitrosomonas RepID=Q0AFP8_NITEC Length = 183 Score = 68.6 bits (166), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 44/152 (28%), Positives = 80/152 (52%), Gaps = 4/152 (2%) Query: 9 RWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDL 68 + +I++S + A+L+ +MP+ ++V RP++V L LLYW + P + + F+ G +D+ Sbjct: 27 KSLIYISLITAVLINLMPFDKVILVLRPDFVALTLLYWNIYQPQQAGMSIAFISGLFMDV 86 Query: 69 ISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINV 128 I S +G +A +I + + Y+ R +QQ V+ + L +VF L Sbjct: 87 IDVSIMGQHAIAYCLITFFALILYRRLRLFNAFQQIPAVLWILLSGQGVVFLTGILA--G 144 Query: 129 SFRPE--VFWSSVVNGVLWPWIFLLMRKVRQQ 158 S+ PE +F +SV + WP + L+ R+Q Sbjct: 145 SYIPEWYIFLASVTGALCWPLLVFLLGIFRKQ 176 >UniRef50_Q2YC95 Rod shape-determining protein MreD n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2YC95_NITMU Length = 173 Score = 67.4 bits (163), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 44/144 (30%), Positives = 74/144 (51%) Query: 10 WVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLI 69 W I LS ++ALLL ++P +P++V L++LYW L P RV +G F MG ++DL Sbjct: 18 WFIMLSLIVALLLNLIPVTGTARTLQPDFVALVMLYWYLNEPQRVGIGMAFWMGLLMDLS 77 Query: 70 SGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVS 129 + ST G L S++A++ + + ++QA + L+ L I+ A + Sbjct: 78 NASTFGQHALGYSVMAFMALVFNRRMGIFEGYKQAPQIGLVLLSGQIVTLLAGLFAGSPF 137 Query: 130 FRPEVFWSSVVNGVLWPWIFLLMR 153 F S+V +LWP + ++R Sbjct: 138 PGWNFFLGSIVGMLLWPLLSAILR 161 >UniRef50_Q21FT2 Rod shape-determining protein MreD n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21FT2_SACD2 Length = 162 Score = 66.6 bits (161), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 40/135 (29%), Positives = 69/135 (51%), Gaps = 4/135 (2%) Query: 14 LSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGST 73 +S AL+L I P P RP L+++YW++ P V T ++MG LD++ + Sbjct: 14 VSAFFALVLSIYPIPHAYAALRPELFCLLVVYWVINYPQYFGVTTAWLMGLFLDVVHSTV 73 Query: 74 LGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPE 133 G L ++ +AY+ YQ R+ +LWQQ L V + + +IV W L ++ +P Sbjct: 74 WGAHALGLAAVAYICLSSYQRIRSYSLWQQTLWVFVFVGIHQVIVNW--MLGLSGYHKPT 131 Query: 134 --VFWSSVVNGVLWP 146 + ++ V+ + WP Sbjct: 132 HIILVTTAVSALSWP 146 >UniRef50_C5BSY4 Rod shape-determining protein MreD n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BSY4_TERTT Length = 163 Score = 65.9 bits (159), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 34/149 (22%), Positives = 77/149 (51%) Query: 14 LSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGST 73 LS L+ ++P + RP + L++++W++ P ++ + GF++G + D++ Sbjct: 15 LSIAFGLVFAVLPLTQDFSYLRPELLCLLVIFWVMNSPEQLGMTFGFLVGLLQDVVELGV 74 Query: 74 LGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPE 133 G +A++IIAY+ + YQ R+ ++W Q+L V +L V ++V W + + + Sbjct: 75 WGGHAMALTIIAYICLMSYQRIRSYSVWHQSLWVFILVGVHQVVVNWVQGIAGYRTPAHY 134 Query: 134 VFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + +++ + WP + ++R + Q Sbjct: 135 LVLPTLMTALCWPLVVFFFLRIRHLYRTQ 163 >UniRef50_A8PNB8 Rod shape-determining protein MreD n=1 Tax=Rickettsiella grylli RepID=A8PNB8_9COXI Length = 161 Score = 65.1 bits (157), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 46/141 (32%), Positives = 82/141 (58%), Gaps = 2/141 (1%) Query: 14 LSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGST 73 +SF A+LL I+P P +F P W+ L+L+YWI+ LP ++ +++G +D++ GS Sbjct: 14 ISFSGAILLNILPLPPMFALFFPLWLPLVLIYWIMVLPGHIHFTLAWLLGLFIDVLYGSY 73 Query: 74 LGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAE-FLVINVSFRP 132 LG LA+ ++AYL + FR + QQ L V ++ ++ I+ + +L + FR Sbjct: 74 LGEHSLALCVVAYLAYRFHLQFRMFPVPQQMLFVFVMLIIYQTILIVTQAWLGFVIDFR- 132 Query: 133 EVFWSSVVNGVLWPWIFLLMR 153 V+ S +++ ++WP I L+R Sbjct: 133 WVWISLLMSALIWPLITYLLR 153 >UniRef50_A1U482 Rod shape-determining protein MreD n=3 Tax=Marinobacter RepID=A1U482_MARAV Length = 158 Score = 63.5 bits (153), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 39/133 (29%), Positives = 73/133 (54%) Query: 14 LSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGST 73 ++ +++L+L I +P + FRP W+ LI+ YW P + + + +G +LD++ + Sbjct: 12 ITVVLSLVLSISLFPVDWFQFRPEWLGLIVFYWTFRAPAQFGILMAWCLGLLLDILESTP 71 Query: 74 LGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPE 133 LGV + M++IA+LV +Q R L QQ L+V LL + ++V + + L+ S Sbjct: 72 LGVNAMGMALIAFLVLTIHQRLRMYPLPQQCLMVFLLLGINQMLVHFVKQLLGAESAGFS 131 Query: 134 VFWSSVVNGVLWP 146 W ++ + + WP Sbjct: 132 YLWPALTSALAWP 144 >UniRef50_C6P2H4 Rod shape-determining protein MreD n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P2H4_9PROT Length = 172 Score = 62.4 bits (150), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 75/146 (51%), Gaps = 7/146 (4%) Query: 15 SFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTL 74 S +A++L +PW + RP++V L+LLYW PHRV +G +V+G D+ S Sbjct: 23 SLFVAVMLNWLPWHGWALALRPDFVALVLLYWCTHKPHRVGIGIAWVVGIFSDVADASLF 82 Query: 75 GVRVLAMSIIAYLVALKYQLFRNLALWQQALVV---MLLSLVVDIIVFWAEFLVINVSFR 131 G LA +++A+ + ++ + L QQA+ V +LLS V W + Sbjct: 83 GQHALAYTVLAFGGIVLHRRVQMFDLRQQAMHVFPMLLLSYAAYAAVHWQ----VRGYVA 138 Query: 132 PEVFWSSVVNGVLWPWIFLLMRKVRQ 157 E F S V+ +LW + LL++ +R+ Sbjct: 139 WEYFLGSGVSALLWIPMTLLLQALRR 164 >UniRef50_C6MDC7 Rod shape-determining protein MreD n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MDC7_9PROT Length = 191 Score = 62.0 bits (149), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 45/151 (29%), Positives = 78/151 (51%), Gaps = 5/151 (3%) Query: 4 YRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMG 63 Y G W I S +I L+L +P +L++ RP++V L + YW + P+++ + F MG Sbjct: 30 YVPAGNWFIATSLIIGLILNFLPLQGDLLISRPDFVALAITYWNVNHPYKLGMSMAFGMG 89 Query: 64 AILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEF 123 ++D+ + LG LA S+I YL + + R +L +QA + L++ I++ Sbjct: 90 LMVDVGNAGILGQHALAYSVIFYLTLIFGRRLRLFSLLKQAPQIGFFLLIMQIVIIL--I 147 Query: 124 LVINVSFRP--EVFWSSVVNGVLW-PWIFLL 151 + N S P F ++V +LW P FL+ Sbjct: 148 ALSNGSALPGWGYFLATVTGTLLWAPASFLM 178 >UniRef50_A5IGA1 Rod shape determining protein MreD n=5 Tax=Legionella RepID=A5IGA1_LEGPC Length = 159 Score = 60.8 bits (146), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 42/136 (30%), Positives = 74/136 (54%), Gaps = 2/136 (1%) Query: 14 LSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGST 73 L FL+AL L I+P P+ + +FRP WVLL++LY LP + + + G +LD++ + Sbjct: 10 LGFLVALALSILPMPELISIFRPPWVLLLVLYIEYYLPGKFKLTALLIAGLLLDVLLSTV 69 Query: 74 LGVRVLAMSIIAYLVALKYQLFRNLALWQQ-ALVVMLLSLVVDIIVFWAEFLVINVSFRP 132 +G A+ ++ ++ + K + + +L QQ L+ L II+F L N + Sbjct: 70 IGEHSFALLLVTWIASTKSRRVQFFSLIQQVCLIGFFCFLYQSIIIFIDALLGFNYNLIM 129 Query: 133 EVFWSSVVNGVLWPWI 148 V S+++ ++WPWI Sbjct: 130 PV-ASAILGMIIWPWI 144 >UniRef50_B3PC04 Putative rod shape-determining protein MreD n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PC04_CELJU Length = 161 Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 33/128 (25%), Positives = 64/128 (50%) Query: 35 RPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQL 94 RP +VL++ +YW+L +P V++ V+G DL+ G L + I+AY+ L YQ Sbjct: 34 RPEFVLVVAIYWMLNMPQSVSLVFLCVLGLFQDLLESVPFGQHSLGLIIVAYICFLSYQR 93 Query: 95 FRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRK 154 RN W+QA V +L + + W + + + +V + + WP+ + + + Sbjct: 94 VRNFPRWKQAGWVFVLVGIAQLTDNWVQSMAGRQLSGVAFLYPAVTSAIFWPFCCVWLDR 153 Query: 155 VRQQFAVQ 162 + Q++ + Sbjct: 154 LCQRYQLH 161 >UniRef50_C0DXR0 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DXR0_EIKCO Length = 167 Score = 58.2 bits (139), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 49/146 (33%), Positives = 76/146 (52%), Gaps = 11/146 (7%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 + RWV + SFL+ LL+ +P P++ L++L YW+L P + +G F +G + Sbjct: 11 TPKRWVAF-SFLLVLLIDFIPVAPPWAYPLPDFTLIMLAYWLLHRPQLIGIGVAFCLGLL 69 Query: 66 LDLISGSTLGVRVLAMSIIAYLVAL-KYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFL 124 +D+ S S LG LA S+ A+L+ + Q+ N WQ A+ V LV ++VF L Sbjct: 70 VDIGSNSLLGQHGLAYSVAAFLIERNRRQIVLNSFGWQ-AVAVAGAMLVSQLVVF----L 124 Query: 125 VINVSFRPEVFW----SSVVNGVLWP 146 V +P W S+V G+LWP Sbjct: 125 VSLFQQQPFPLWRLWLPSIVTGLLWP 150 >UniRef50_C8PVZ5 Rod shape-determining protein MreD n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVZ5_9GAMM Length = 161 Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 37/147 (25%), Positives = 79/147 (53%), Gaps = 7/147 (4%) Query: 11 VIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLIS 70 V+ +SF+IA +L + P + +FRP W++++L++W++ P + +G FV+G DL++ Sbjct: 16 VMAISFIIASVLSVYPLSAEIALFRPMWMIMMLIFWLIFQPTLIGIGLAFVVGLFADLLT 75 Query: 71 GSTLGVRVLAMSIIAYLVALKYQLFRNLA---LWQQALVVMLLSLVVDIIVFWAEFLVIN 127 S +G + L ++A+ + R L+ +W A +L+ + I + L Sbjct: 76 DSRIGQQALCAVLVAFFIKFVSGYLRQLSSNLVWLLAGACLLIYQLGLIFL----HLFTQ 131 Query: 128 VSFRPEVFWSSVVNGVLWPWIFLLMRK 154 F P++ ++ V+ ++WP + +M + Sbjct: 132 GVFAPQLLYTVAVSTLIWPLLVAVMLR 158 >UniRef50_Q3SM35 Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SM35_THIDA Length = 166 Score = 56.2 bits (134), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 1/79 (1%) Query: 3 SYRSQGRWV-IWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFV 61 + + GRW I S +A+L++ +PW +V RP++VL+ LL+W+L P RV G F Sbjct: 4 AAETSGRWRRILGSLTLAVLVEQLPWSGLAMVLRPDFVLVALLFWVLHQPQRVGFGIAFF 63 Query: 62 MGAILDLISGSTLGVRVLA 80 +G I D G+ LG +A Sbjct: 64 LGLIADFQDGAALGQHGIA 82 >UniRef50_C1D5N3 MreD n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D5N3_LARHH Length = 168 Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/111 (35%), Positives = 61/111 (54%) Query: 36 PNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLF 95 P++V L++LYW + P R +G F++G I D S +G LA ++I+YLV L+ + Sbjct: 39 PDFVALLVLYWNINQPSRFGIGLSFLVGLIGDFFSAGLIGQHALAYTVISYLVLLRQRQI 98 Query: 96 RNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWP 146 +L QQAL+V+ L L+ I++ A + V F S V +LWP Sbjct: 99 AMYSLGQQALIVLGLLLLSQAIMWLARMALGGVVVGWSYFMSPFVGALLWP 149 >UniRef50_Q0KFF4 Rod shape-determining protein MreD n=12 Tax=Burkholderiales RepID=Q0KFF4_RALEH Length = 170 Score = 52.4 bits (124), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 34/106 (32%), Positives = 58/106 (54%), Gaps = 2/106 (1%) Query: 12 IWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISG 71 I SF++A L +MPW L V P+ V L+L++W + P +V +G F++G ++D+ Sbjct: 16 IAFSFVLAFLFNLMPWGTTLWV--PDMVALVLVFWNIHQPRKVGMGVAFLLGLLMDVHDA 73 Query: 72 STLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDII 117 LG LA +++AY ++ ++ QAL V+ L VV + Sbjct: 74 RLLGEHALAYTLLAYFAITIHRRVLWFTVYTQALHVLPLLFVVHAV 119 >UniRef50_C5TMH6 Rod shape-determining protein MreD n=5 Tax=Neisseria RepID=C5TMH6_NEIFL Length = 181 Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust. Identities = 26/86 (30%), Positives = 47/86 (54%) Query: 3 SYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVM 62 SYR+ ++ S ++ ++L MP+ + + P L+LLYW L P R +G F + Sbjct: 22 SYRAVPLHIMAASLIVMMILDFMPFSFDGFFWLPEMTALMLLYWTLHQPQRAGMGLAFAI 81 Query: 63 GAILDLISGSTLGVRVLAMSIIAYLV 88 G I+D + +TLG+ L+ ++ Y + Sbjct: 82 GLIVDAATAATLGLHALSYVVMTYFI 107 >UniRef50_A1K1T9 Rod shape-determining protein n=4 Tax=Rhodocyclaceae RepID=A1K1T9_AZOSB Length = 173 Score = 50.8 bits (120), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 26/77 (33%), Positives = 44/77 (57%), Gaps = 2/77 (2%) Query: 12 IWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISG 71 I+ S ++AL L +P P+WV L+L +W + P R+ +G GF+ G ++D+ G Sbjct: 19 IYFSLMVALALAYVP--TGRFPGVPDWVALVLAFWCIREPLRIGMGAGFLFGVLVDIGQG 76 Query: 72 STLGVRVLAMSIIAYLV 88 + +G LA ++AYL Sbjct: 77 AAMGQHALAYVVLAYLA 93 >UniRef50_C7RML3 Rod shape-determining protein MreD n=3 Tax=Betaproteobacteria RepID=C7RML3_9PROT Length = 173 Score = 50.1 bits (118), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 36/101 (35%), Positives = 50/101 (49%), Gaps = 8/101 (7%) Query: 10 WVIWLSFLIALLLQIMP---WPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAIL 66 W I + LIALL +P WP P+WV L L++W + P RV +G F+ G + Sbjct: 17 WFIASTLLIALLFNFLPTANWPGV-----PDWVALALVFWCVREPRRVGMGLAFLFGLAM 71 Query: 67 DLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVV 107 D+ S LG LA ++AY + + L QQAL V Sbjct: 72 DVADASLLGQHALAYVLVAYGASSLSRRILWFPLGQQALQV 112 >UniRef50_Q9RH81 Rod shape determining protein MreD (Fragment) n=1 Tax=Pseudomonas fluorescens RepID=Q9RH81_PSEFL Length = 95 Score = 50.1 bits (118), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 31/87 (35%), Positives = 51/87 (58%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 MA+ S+ W++WL+F I +LL + P P + + RP W+ L+L +W L LPH+V + T Sbjct: 1 MANTHSRNGWIVWLTFAIGMLLSVSPLPQFMEILRPLWLALLLAFWSLNLPHKVGMVTAM 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYL 87 +G D++ G+ LG L + + L Sbjct: 61 FLGLAEDVLYGTLLGQNALITKVYSPL 87 >UniRef50_C7I0H6 Rod shape-determining protein MreD n=4 Tax=Burkholderiales RepID=C7I0H6_THIIN Length = 178 Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 2/109 (1%) Query: 10 WVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLI 69 W I LS L+ALL+ +P + + P+ V L L++W + P RV + FV+G +D+ Sbjct: 22 WFIALSLLMALLIDFLPL--GRLAWMPDMVALTLVFWNVHQPRRVGMAVAFVLGLAVDVQ 79 Query: 70 SGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIV 118 GS LG L ++++Y ++ A QQAL V+ L + +++ Sbjct: 80 QGSVLGQHALIYTVLSYFAITLHRRLLWFAPLQQALHVLPLFVATQVLL 128 >UniRef50_D0L063 Rod shape-determining protein MreD n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L063_HALNC Length = 155 Score = 49.3 bits (116), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 1/154 (0%) Query: 7 QGRW-VIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 + +W +I LS L+AL+L + P + P W+LL +LYW + P+ V + ++ G + Sbjct: 2 RNKWAMIPLSLLVALILTVEPSVPLYQHYSPQWLLLTVLYWCIREPNSVGLIVAWMSGLV 61 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 LD+ S LG L ++ A +V Q+ QQAL V LS + ++ W + + Sbjct: 62 LDVASVGLLGANALLFTLSAAVVLGLRQMLFFTGPVQQALFVAGLSAIYLLLSLWMQGGI 121 Query: 126 INVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQF 159 +++ N V WP I ++ +R+++ Sbjct: 122 SDLTMLLHNLVRVASNLVAWPIILMVFHLLRRRY 155 >UniRef50_B5EMQ8 Rod shape-determining protein MreD n=3 Tax=Acidithiobacillus RepID=B5EMQ8_ACIF5 Length = 158 Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 34/147 (23%), Positives = 73/147 (49%) Query: 11 VIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLIS 70 V+ L F AL+ + +P P++V L+LLYW ++ ++ +++G + D++ Sbjct: 5 VVVLGFFFALVAEAIPCGPFYASLHPDFVALLLLYWAISSASELSFTVVWLIGLLQDMVL 64 Query: 71 GSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSF 130 G LG + +A ++ YL+ R+LA W+Q + +L L ++V+ + +++ Sbjct: 65 GDVLGAQAIAGVVMIYLLYTGIARVRSLASWEQLFFIFMLLLAHRLLVWSWQAWAGTITW 124 Query: 131 RPEVFWSSVVNGVLWPWIFLLMRKVRQ 157 + ++ +LWP L + +R Sbjct: 125 HFSLLLGPLIGALLWPLFTLTLDYLRH 151 >UniRef50_C5V1V9 Rod shape-determining protein MreD n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V1V9_9PROT Length = 170 Score = 48.5 bits (114), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 38/146 (26%), Positives = 71/146 (48%), Gaps = 7/146 (4%) Query: 15 SFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTL 74 S + ALLL +PW + P++V ++LLYW P R+ VG + +G + D+ S Sbjct: 23 SIVTALLLNGLPWGGLWLTLHPDFVAVVLLYWCTHKPLRIGVGLSWAIGILADVGDASLF 82 Query: 75 GVRVLAMSIIAY---LVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFR 131 G LA +++A+ +++ + ++F Q LV++ + V +V W +N Sbjct: 83 GQHALAYTLLAFGGVVLSRRIRMFDLREQTTQVLVILFSTYAVYALVQWQ----VNGQIV 138 Query: 132 PEVFWSSVVNGVLWPWIFLLMRKVRQ 157 F + + +LW + L + +RQ Sbjct: 139 WTYFLGCLTSTLLWVPMSSLFQSMRQ 164 >UniRef50_Q1QDJ0 Rod shape-determining protein MreD n=2 Tax=Psychrobacter RepID=Q1QDJ0_PSYCK Length = 161 Score = 48.1 bits (113), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 37/144 (25%), Positives = 72/144 (50%), Gaps = 1/144 (0%) Query: 11 VIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLIS 70 VI LSF+IA L + P ++ RP ++++L++W+L P V + + F +G I DL+ Sbjct: 16 VIVLSFIIASSLSVYPLSPSMATLRPMIMIMVLIFWLLFQPRYVGIFSAFAIGLIADLLM 75 Query: 71 GSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSF 130 + LG + + +A ++ + R L A ++ L L + W + + F Sbjct: 76 DTHLGQQAFSAVAVALMIKVTSIYIRQLNTI-SAWIIASLGLFIFQASLWMLQMFVQDVF 134 Query: 131 RPEVFWSSVVNGVLWPWIFLLMRK 154 + +S +++ + WP + L +RK Sbjct: 135 VAQSTFSLLMSIISWPLVLLTLRK 158 >UniRef50_A0L7I2 Rod shape-determining protein MreD n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L7I2_MAGSM Length = 171 Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 28/80 (35%), Positives = 45/80 (56%), Gaps = 1/80 (1%) Query: 10 WVIWLSFLIALLLQIMPWPDNL-IVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDL 68 W+ LS ++A+ +Q + P VFRP+ +L+ L YW L P R G+ F G +DL Sbjct: 11 WLPLLSLMLAVAVQEVALPYQAWSVFRPDLLLVALFYWRLYRPDRCGPGSAFGAGVAVDL 70 Query: 69 ISGSTLGVRVLAMSIIAYLV 88 +SG +G+ L+ +I L+ Sbjct: 71 LSGGPMGINALSKILITLLI 90 >UniRef50_Q2SBH0 Cell shape-determining protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SBH0_HAHCH Length = 157 Score = 47.0 bits (110), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 43/154 (27%), Positives = 79/154 (51%), Gaps = 1/154 (0%) Query: 5 RSQGRWVIWL-SFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMG 63 R + R V+++ + +A + ++P FRP + +++ YW L P + G+ +G Sbjct: 3 RDEFRPVLFVFTLFLAFCVSLIPLGGFAAYFRPESICMVMFYWTLKHPGACGILVGWCVG 62 Query: 64 AILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEF 123 + D++ GSTLGV LA+++ AYLV Q + L QQ+ VV ++ +V ++ W Sbjct: 63 LLWDVLMGSTLGVHALALALQAYLVLKMLQRLQMFPLIQQSFVVFIIVGIVLMLFRWING 122 Query: 124 LVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQ 157 L+ + ++ + +LWP LLM K+ Sbjct: 123 LLAQPATDMAYLLGALSSALLWPLFSLLMEKLEN 156 >UniRef50_Q31F49 Rod shape-determining protein MreD n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31F49_THICR Length = 167 Score = 45.4 bits (106), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 28/102 (27%), Positives = 53/102 (51%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 S +W++ S+ I++++ M I F P + LLILL+W + ++ ++ + F +G + Sbjct: 11 SDIKWLLIFSYFISVVIDSMMILSFNINFVPYFTLLILLFWSTQILNQTHLFSAFALGLL 70 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVV 107 D + LG L I +L+ F+ LWQQ+++V Sbjct: 71 FDASMNTPLGSHSLIFVTITFLMLRSRLRFKGYPLWQQSMIV 112 >UniRef50_A5WCI6 Putative uncharacterized protein n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WCI6_PSYWF Length = 162 Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 38/147 (25%), Positives = 76/147 (51%), Gaps = 3/147 (2%) Query: 15 SFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTL 74 SF+ A ++ I P + RP ++++L++W++ P V V T F +G I DL+ + L Sbjct: 18 SFVAASVVNIYPLSLDASKLRPMALIMVLIFWLIYKPRYVGVVTAFAIGIISDLLLDTRL 77 Query: 75 GVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW-AEFLVINVSFRPE 133 G + A I+A+ + Q + + L A V +L+V + W ++L N+ + Sbjct: 78 GQQGFAAVIMAFSLRFVGQYIKQVNL-PVAWTVATGALIVFQLTLWIVQYLTQNIFYASA 136 Query: 134 VFWSSVVNGVLWPWIFLLMRKVRQQFA 160 +F S +V+ + WP +F + + +++ Sbjct: 137 IF-SLLVSVISWPLVFFGLHRFINKYS 162 >UniRef50_B0VS17 Rod shape-determining protein n=17 Tax=Acinetobacter RepID=B0VS17_ACIBS Length = 163 Score = 44.7 bits (104), Expect = 0.001, Method: Compositional matrix adjust. Identities = 40/156 (25%), Positives = 72/156 (46%), Gaps = 8/156 (5%) Query: 5 RSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGA 64 R W I LS ++ +L I P ++ +RP ++L+I+L+W++ P V F MG Sbjct: 11 RKDPLWGIILSIIVGSVLMIYPLSYDISGWRPLFMLMIMLFWVVCQPTWCGVWFAFGMGI 70 Query: 65 ILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLA---LWQQALVVMLLSLVVDIIVFWA 121 DL+ + LG+ L+ I+ ++ + R L LW A +V++ L W Sbjct: 71 FTDLLLDAPLGLNALSFVIVTFITRFLIRERRILTFGNLWTIATLVIIAHLA----FMWV 126 Query: 122 EFLVINVSFRPEVFWSSVVNGVL-WPWIFLLMRKVR 156 + + F W ++ +L WP ++ + K R Sbjct: 127 TQTMGGIHFSIARHWQPLMTSILTWPVVYYCLAKWR 162 >UniRef50_A9I0I9 Rod shape-determining protein MreD n=5 Tax=Bordetella RepID=A9I0I9_BORPD Length = 187 Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust. Identities = 25/89 (28%), Positives = 44/89 (49%), Gaps = 4/89 (4%) Query: 36 PNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLF 95 P+ + L+L +W + P RV + F G ++D+ S LG L+ ++ AY ++ Sbjct: 56 PDILALVLAFWCVHEPRRVGLVAAFCFGVLMDVHDASVLGGHALSYTLTAYGAVALHRRL 115 Query: 96 RNLALWQQAL----VVMLLSLVVDIIVFW 120 + LW QA+ V L LV +++ W Sbjct: 116 QRFDLWSQAMHMLPVFFLARLVQQMVLAW 144 >UniRef50_Q1YU27 Rod shape-determining protein MreD n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YU27_9GAMM Length = 158 Score = 42.7 bits (99), Expect = 0.004, Method: Compositional matrix adjust. Identities = 28/107 (26%), Positives = 63/107 (58%), Gaps = 1/107 (0%) Query: 5 RSQGRWV-IWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMG 63 S R + + L+ ++A++L +MP + IV++PN++LL ++ W++ P V + +G Sbjct: 2 ESDNRGIAVCLTLILAVVLSLMPLSGDWIVWKPNFLLLTVMAWVMRWPDGVGIFFAASVG 61 Query: 64 AILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLL 110 + D++ + G V+ ++ A+ +AL + + L++ Q+ L+V L+ Sbjct: 62 LLADILLRMSPGHSVIVFALCAFALALVSRWAKYLSMLQRTLLVALI 108 >UniRef50_Q21RI3 Rod shape-determining protein MreD n=66 Tax=Burkholderiales RepID=Q21RI3_RHOFD Length = 176 Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust. Identities = 24/82 (29%), Positives = 46/82 (56%), Gaps = 8/82 (9%) Query: 12 IWLSFLIALLLQIMPWPDNL-----IVFRPNWVLLILLYWILALPHRVNVGTGFVMGAIL 66 IW S + ALLL ++ N+ + P+ + L+L++W + P R+ +G FV G + Sbjct: 18 IWGSLVAALLLNML---QNMGLWGRAAWMPDLLALVLVFWSIHQPQRIGIGAAFVFGIFV 74 Query: 67 DLISGSTLGVRVLAMSIIAYLV 88 D+ G+ LG L+ +++++L Sbjct: 75 DVHQGAMLGQHALSYTVLSFLA 96 >UniRef50_A4T0H0 Rod shape-determining protein MreD n=2 Tax=Polynucleobacter necessarius RepID=A4T0H0_POLSQ Length = 174 Score = 40.0 bits (92), Expect = 0.028, Method: Compositional matrix adjust. Identities = 29/121 (23%), Positives = 60/121 (49%), Gaps = 18/121 (14%) Query: 36 PNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLF 95 P+W+++ +++W + V+V T F++G ++D+ + LG+ + S++AY+ ++ Sbjct: 40 PDWLIICMVFWNIHQHRYVSVITAFILGLMMDVHNSDLLGLHAFSYSLVAYVAISWHRRI 99 Query: 96 RNLALWQQA---LVVMLLSLVVDIIVFWAEFLVINVSFRPEVFW-------SSVVNGVLW 145 L + QA L V LL + ++V WA E++W + + +LW Sbjct: 100 VALTVLSQAVHLLPVFLLVALFPVLVHWA--------LSGELYWWALTGAVQAFIEAMLW 151 Query: 146 P 146 P Sbjct: 152 P 152 >UniRef50_C2D6Q5 Putative uncharacterized protein n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D6Q5_9ACTN Length = 185 Score = 40.0 bits (92), Expect = 0.030, Method: Compositional matrix adjust. Identities = 41/142 (28%), Positives = 70/142 (49%), Gaps = 10/142 (7%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYW-ILALPHRVNVGT- 58 + + SQ + I I +LQ+ PD IV + L++ I AL R N Sbjct: 2 LTNSSSQKKNRILPFACICFILQVALAPD--IVLASGQINFALIFTVICALSKRDNTTIV 59 Query: 59 -GFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQ--LFRNLALWQQALVVMLLSLVVD 115 F+ G + DL+S +G+ +SI+AYLV K LF ++A +++ +L+L+V Sbjct: 60 YAFIAGLLFDLLSTGPVGIMACLLSIVAYLVVDKIHVNLFEDIA--TSSIIFSVLALMVC 117 Query: 116 IIVFWAEFLVINV-SFRPEVFW 136 ++ F F+ +V SF P + + Sbjct: 118 LLHFLIMFVCGSVTSFIPSLIY 139 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0ABH6 Rod shape-determining protein mreD n=132 Tax=Ent... 138 9e-32 UniRef50_C4L8L5 Rod shape-determining protein MreD n=1 Tax=Tolum... 134 7e-31 UniRef50_C4K6Y8 Rod shape-determining protein n=1 Tax=Candidatus... 133 2e-30 UniRef50_Q2BKP8 Rod shape-determining protein MreD n=2 Tax=Gamma... 133 3e-30 UniRef50_Q47VG6 Rod shape-determining protein MreD n=4 Tax=Alter... 132 3e-30 UniRef50_C7R9G4 Rod shape-determining protein MreD n=1 Tax=Kangi... 129 2e-29 UniRef50_A7C6B4 Rod shape-determining protein MreD n=1 Tax=Beggi... 129 3e-29 UniRef50_A0KFA9 Rod shape-determining protein MreD n=3 Tax=Gamma... 129 4e-29 UniRef50_Q15ZH1 Rod shape-determining protein MreD n=4 Tax=Alter... 127 1e-28 UniRef50_A6VWN4 Rod shape-determining protein MreD n=2 Tax=Marin... 127 1e-28 UniRef50_Q5QWE3 Rod shape-determining protein n=2 Tax=Idiomarina... 125 5e-28 UniRef50_C6MDC7 Rod shape-determining protein MreD n=1 Tax=Nitro... 122 3e-27 UniRef50_B7V018 Rod shape-determining protein MreD n=21 Tax=Pseu... 122 4e-27 UniRef50_Q2YC95 Rod shape-determining protein MreD n=1 Tax=Nitro... 121 8e-27 UniRef50_Q07WQ1 Rod shape-determining protein MreD n=21 Tax=Shew... 120 1e-26 UniRef50_Q0AFP8 Rod shape-determining protein MreD n=2 Tax=Nitro... 118 5e-26 UniRef50_B5JU59 Rod shape-determining protein MreD n=1 Tax=gamma... 118 5e-26 UniRef50_C5SBR5 Rod shape-determining protein MreD n=1 Tax=Alloc... 118 7e-26 UniRef50_C6P2H4 Rod shape-determining protein MreD n=1 Tax=Sider... 118 8e-26 UniRef50_B2SMY7 Rod shape-determining protein MreD n=20 Tax=Xant... 117 1e-25 UniRef50_Q7NPY3 Rod shape-determining protein MreD n=2 Tax=Chrom... 117 1e-25 UniRef50_C5BSY4 Rod shape-determining protein MreD n=1 Tax=Tered... 116 3e-25 UniRef50_C0N753 Rod shape-determining protein MreD n=1 Tax=Methy... 116 3e-25 UniRef50_B8KR95 Rod shape-determining protein MreD n=1 Tax=gamma... 116 3e-25 UniRef50_A4BGL4 Rod shape-determining protein MreD n=1 Tax=Reine... 116 3e-25 UniRef50_A4BLX4 Rod shape-determining protein MreD n=1 Tax=Nitro... 116 4e-25 UniRef50_Q60CK4 Rod shape-determining protein MreD n=1 Tax=Methy... 115 5e-25 UniRef50_A1WVS1 Rod shape-determining protein MreD n=2 Tax=Ectot... 115 6e-25 UniRef50_B8GL91 Rod shape-determining protein MreD n=2 Tax=Thioa... 114 1e-24 UniRef50_A4A5B4 Rod shape-determining protein MreD n=1 Tax=Congr... 114 1e-24 UniRef50_Q1QVB9 Rod shape-determining protein MreD n=1 Tax=Chrom... 113 2e-24 UniRef50_B7RTI7 Rod shape-determining protein MreD n=2 Tax=uncla... 113 2e-24 UniRef50_B3PC04 Putative rod shape-determining protein MreD n=1 ... 113 3e-24 UniRef50_B5F9L8 Rod shape-determining protein MreD n=89 Tax=Gamm... 113 3e-24 UniRef50_A0Z7H0 Rod shape-determining protein n=1 Tax=marine gam... 111 6e-24 UniRef50_A1U482 Rod shape-determining protein MreD n=3 Tax=Marin... 111 1e-23 UniRef50_Q1ZG63 Hypothetical rod shape-determining protein MreD ... 109 3e-23 UniRef50_C4GIM3 Putative uncharacterized protein n=1 Tax=Kingell... 109 4e-23 UniRef50_A9N8Z0 Rod shape-determining protein MreD n=7 Tax=Coxie... 108 5e-23 UniRef50_Q0VS68 Rod shape-determining protein MreD n=2 Tax=Alcan... 108 5e-23 UniRef50_Q21FT2 Rod shape-determining protein MreD n=1 Tax=Sacch... 108 1e-22 UniRef50_Q7VRC2 Rod shape-determining protein MreD n=2 Tax=Candi... 105 5e-22 UniRef50_Q1MYL6 Rod shape-determining protein MreD n=1 Tax=Berma... 105 6e-22 UniRef50_C7RML3 Rod shape-determining protein MreD n=3 Tax=Betap... 104 1e-21 UniRef50_C5V1V9 Rod shape-determining protein MreD n=1 Tax=Galli... 103 2e-21 UniRef50_Q0KFF4 Rod shape-determining protein MreD n=12 Tax=Burk... 103 2e-21 UniRef50_Q1GYC9 Rod shape-determining protein MreD n=3 Tax=Methy... 103 3e-21 UniRef50_C7I0H6 Rod shape-determining protein MreD n=4 Tax=Burkh... 98 7e-20 UniRef50_C1D5N3 MreD n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 98 7e-20 UniRef50_C0DXR0 Putative uncharacterized protein n=1 Tax=Eikenel... 98 1e-19 UniRef50_Q8D1V7 MreD protein n=1 Tax=Wigglesworthia glossinidia ... 96 4e-19 UniRef50_A1K1T9 Rod shape-determining protein n=4 Tax=Rhodocycla... 96 5e-19 UniRef50_A9I0I9 Rod shape-determining protein MreD n=5 Tax=Borde... 95 1e-18 UniRef50_Q2SBH0 Cell shape-determining protein n=1 Tax=Hahella c... 95 1e-18 UniRef50_A1STZ6 Rod shape-determining protein MreD n=1 Tax=Psych... 93 3e-18 UniRef50_UPI00016994A6 Rod shape-determining protein MreD n=1 Ta... 93 4e-18 UniRef50_B5EMQ8 Rod shape-determining protein MreD n=3 Tax=Acidi... 91 1e-17 UniRef50_P44476 Rod shape-determining protein mreD n=32 Tax=Past... 91 1e-17 UniRef50_A8PNB8 Rod shape-determining protein MreD n=1 Tax=Ricke... 90 2e-17 UniRef50_D0L063 Rod shape-determining protein MreD n=1 Tax=Halot... 90 4e-17 UniRef50_B0VS17 Rod shape-determining protein n=17 Tax=Acinetoba... 89 4e-17 UniRef50_C5TMH6 Rod shape-determining protein MreD n=5 Tax=Neiss... 89 5e-17 UniRef50_Q3SM35 Putative uncharacterized protein n=1 Tax=Thiobac... 87 2e-16 UniRef50_Q1LU39 Rod shape-determining protein MreD n=1 Tax=Bauma... 84 2e-15 UniRef50_Q1QDJ0 Rod shape-determining protein MreD n=2 Tax=Psych... 83 2e-15 UniRef50_A5WCI6 Putative uncharacterized protein n=1 Tax=Psychro... 83 3e-15 UniRef50_A5IGA1 Rod shape determining protein MreD n=5 Tax=Legio... 83 4e-15 UniRef50_Q31F49 Rod shape-determining protein MreD n=1 Tax=Thiom... 82 6e-15 UniRef50_C8PVZ5 Rod shape-determining protein MreD n=1 Tax=Enhyd... 80 3e-14 UniRef50_A0L7I2 Rod shape-determining protein MreD n=1 Tax=Magne... 73 3e-12 UniRef50_Q9RH81 Rod shape determining protein MreD (Fragment) n=... 65 8e-10 Sequences not found previously or not previously below threshold: UniRef50_Q21RI3 Rod shape-determining protein MreD n=66 Tax=Burk... 98 1e-19 UniRef50_A4T0H0 Rod shape-determining protein MreD n=2 Tax=Polyn... 74 2e-12 UniRef50_Q1YU27 Rod shape-determining protein MreD n=1 Tax=gamma... 64 2e-09 UniRef50_A5CW44 Rod shape-determining protein MreD n=3 Tax=Gamma... 61 1e-08 UniRef50_B0SG26 Cell shape-determining protein n=6 Tax=Leptospir... 50 3e-05 UniRef50_Q73N05 Rod shape-determining protein MreD n=1 Tax=Trepo... 45 0.001 UniRef50_C8PRS7 Rod shape-determining protein MreD n=1 Tax=Trepo... 44 0.002 UniRef50_B1I4Q2 Putative uncharacterized protein n=1 Tax=Candida... 44 0.002 UniRef50_A8TM61 Putative uncharacterized protein n=1 Tax=alpha p... 43 0.003 UniRef50_A7HW07 Rod shape-determining protein MreD n=1 Tax=Parvi... 43 0.005 UniRef50_B2S393 Rod shape-determining protein n=2 Tax=Treponema ... 41 0.012 UniRef50_Q0AWG6 Putative uncharacterized protein n=1 Tax=Syntrop... 41 0.013 UniRef50_UPI0000E87A9D hypothetical protein MB2181_01455 n=1 Tax... 41 0.013 UniRef50_B6ITQ9 Putative uncharacterized protein n=1 Tax=Rhodosp... 41 0.014 UniRef50_A4J7K3 Putative uncharacterized protein n=1 Tax=Desulfo... 41 0.017 UniRef50_C8WGI8 Rod shape-determining protein MreD n=1 Tax=Egger... 40 0.021 UniRef50_C1F7C9 Rod shape-determining protein MreD n=1 Tax=Acido... 40 0.022 UniRef50_B3T1Z2 Putative rod shape-determining protein MreD n=1 ... 40 0.025 UniRef50_B3E5W6 Rod shape-determining protein MreD n=1 Tax=Geoba... 40 0.032 UniRef50_A3UE63 Putative uncharacterized protein n=1 Tax=Oceanic... 39 0.043 UniRef50_C1QD51 Rod shape-determining protein MreD n=2 Tax=Brach... 39 0.056 UniRef50_Q0AN30 Putative uncharacterized protein n=1 Tax=Maricau... 39 0.061 UniRef50_B8FVF2 Rod shape-determining protein MreD n=2 Tax=Desul... 39 0.061 UniRef50_B7GIQ3 Cell shape-determining protein n=1 Tax=Anoxybaci... 38 0.098 UniRef50_D2BCD8 Putative uncharacterized protein n=1 Tax=Strepto... 38 0.100 >UniRef50_P0ABH6 Rod shape-determining protein mreD n=132 Tax=Enterobacteriaceae RepID=MRED_ECO57 Length = 162 Score = 138 bits (347), Expect = 9e-32, Method: Composition-based stats. Identities = 162/162 (100%), Positives = 162/162 (100%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF Sbjct: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW Sbjct: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ Sbjct: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 >UniRef50_C4L8L5 Rod shape-determining protein MreD n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L8L5_TOLAT Length = 163 Score = 134 bits (339), Expect = 7e-31, Method: Composition-based stats. Identities = 61/161 (37%), Positives = 111/161 (68%) Query: 2 ASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFV 61 S G+ I+L+ ++A++L ++P P + +FRP+WV L++LYW++ALPH +NV + ++ Sbjct: 3 GSLTGHGKGSIYLTLIVAIILTMVPLPVAIDMFRPDWVALVVLYWVIALPHHLNVVSAWI 62 Query: 62 MGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWA 121 +G I+D++ GSTLG+ L+M++I+ +VA +YQ RN ++WQQALV+ L V +++FW Sbjct: 63 VGLIMDILLGSTLGIHALSMAVISCVVAAQYQKIRNFSVWQQALVMGSLIFVGQLLIFWV 122 Query: 122 EFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 E L + W+S+ + +LWP ++L +R +R++F ++ Sbjct: 123 EHLFASPRLNTRFVWASLSSTLLWPSVYLFLRYIRRRFNIR 163 >UniRef50_C4K6Y8 Rod shape-determining protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K6Y8_HAMD5 Length = 162 Score = 133 bits (334), Expect = 2e-30, Method: Composition-based stats. Identities = 97/162 (59%), Positives = 136/162 (83%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M+ Y+S+GRWVI+LSFLI ++LQIMPWP + +F+P+W+LLI +YW++ALPHRVN+GTGF Sbjct: 1 MSYYKSRGRWVIYLSFLIGIILQIMPWPQQIDMFQPSWLLLIFIYWVMALPHRVNLGTGF 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 ++G I DL+ GSTLG+ L MS+IAYLV +K+Q FRN+ALWQQ L V+LLS+++ I VF Sbjct: 61 ILGLITDLLLGSTLGIHSLGMSMIAYLVTIKFQTFRNMALWQQTLFVILLSIIMTITVFL 120 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 EFL+I+VSF +F ++++NG++WPW+FLLMRK R++F VQ Sbjct: 121 TEFLIIHVSFNTGIFSNALINGIVWPWLFLLMRKTRRKFLVQ 162 >UniRef50_Q2BKP8 Rod shape-determining protein MreD n=2 Tax=Gammaproteobacteria RepID=Q2BKP8_9GAMM Length = 166 Score = 133 bits (334), Expect = 3e-30, Method: Composition-based stats. Identities = 59/160 (36%), Positives = 98/160 (61%) Query: 3 SYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVM 62 + + G ++I +FLI L+L +P P + RP WV +IL+YW++ALPHRV +G F + Sbjct: 7 AAQGGGGFIILGTFLIGLMLSQIPLPYFIEWARPEWVAMILIYWVMALPHRVGMGMAFFL 66 Query: 63 GAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAE 122 G +LD+I GS LG+ L+++ IA+L L +Q R L QQA++VM+L + ++ W + Sbjct: 67 GLLLDVIKGSVLGLNALSLTTIAFLTLLLHQRLRMFPLIQQAMMVMVLVGINQLLFHWMQ 126 Query: 123 FLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 +V+G+LWPW+F+++R VR+ F ++ Sbjct: 127 AFTGFTGDSLIFLLPCLVSGILWPWLFVILRGVRRFFRIR 166 >UniRef50_Q47VG6 Rod shape-determining protein MreD n=4 Tax=Alteromonadales RepID=Q47VG6_COLP3 Length = 159 Score = 132 bits (333), Expect = 3e-30, Method: Composition-based stats. Identities = 68/157 (43%), Positives = 109/157 (69%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 S ++I+L+ LIAL+ I P P ++ FRP+WVL++L+YW LALP+++N+ T +VMG I Sbjct: 3 SNNGFIIFLTLLIALMASITPMPLSVDAFRPDWVLIVLVYWCLALPNKINIFTAWVMGFI 62 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 LD++ GS LGV AM++ Y+V + +Q RN ++WQQAL++ +LS ++VFW + + Sbjct: 63 LDVLLGSVLGVHACAMALSVYIVVVNFQKIRNFSVWQQALIIGVLSAQYHLVVFWLQRFL 122 Query: 126 INVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 +V F P + + VLWPW+FLL+R+VR+ F ++ Sbjct: 123 SDVVFLPNYLYPVITTIVLWPWVFLLLRRVRRHFRIE 159 >UniRef50_C7R9G4 Rod shape-determining protein MreD n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R9G4_KANKD Length = 165 Score = 129 bits (326), Expect = 2e-29, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 97/161 (60%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M + G WVI LS +I ++L I P P+ FRP++ LI YW++ALPHR+ + F Sbjct: 4 MKNEVKHGTWVIILSLIIGMILDIFPLPETWQPFRPSFTFLIFSYWVIALPHRIGLLWAF 63 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 + G LD + G+TLG+ +++++ +++ L +Q R LW+QAL ++ LS++ IV W Sbjct: 64 ITGLALDALLGTTLGLHCFSLAVLTFILQLNHQRLRLFPLWKQALTLIFLSVIYFAIVLW 123 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 L + +++ NG+LWPW+F+L+R +R+ F V Sbjct: 124 LARLTGKPESDSWYWIATLTNGLLWPWLFVLLRDIRRYFHV 164 >UniRef50_A7C6B4 Rod shape-determining protein MreD n=1 Tax=Beggiatoa sp. PS RepID=A7C6B4_9GAMM Length = 163 Score = 129 bits (325), Expect = 3e-29, Method: Composition-based stats. Identities = 54/162 (33%), Positives = 93/162 (57%), Gaps = 1/162 (0%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M+S R G WVI LSF+++ +L I+P P +++RP+WV L+L+YW +A+P RV V TG+ Sbjct: 1 MSSERHHGGWVIILSFIVSFMLAIIPLPAWAVLWRPDWVALVLIYWCIAVPQRVGVATGW 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 +G I D++ + LG L++ I Y+ ++ R LWQQA+ V L + I Sbjct: 61 FVGVIYDVLKDTLLGQNALSLCFIGYVSVKWHRQVRLFPLWQQAIGVFGLLSISHWIEAL 120 Query: 121 A-EFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 + ++ ++ +LWPW+F+++R +R+ + V Sbjct: 121 IYKNMLGYSLLTGSFISQVFISMILWPWVFVILRDMRRTYRV 162 >UniRef50_A0KFA9 Rod shape-determining protein MreD n=3 Tax=Gammaproteobacteria RepID=A0KFA9_AERHH Length = 161 Score = 129 bits (324), Expect = 4e-29, Method: Composition-based stats. Identities = 79/159 (49%), Positives = 112/159 (70%) Query: 4 YRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMG 63 + GR IW+S L+AL L I+P P L FRP+W+ ++L+YW LALPHR NVGT +V G Sbjct: 3 QPASGRIWIWISILLALSLSILPLPFQLEPFRPDWLAMVLIYWALALPHRTNVGTAWVAG 62 Query: 64 AILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEF 123 +LD++ GSTLGVR +AM+I YL A ++Q RN +LWQQAL++ LSLV + +FWAE Sbjct: 63 LLLDVLLGSTLGVRAMAMAITTYLAAFQFQKIRNFSLWQQALIIGCLSLVGKVTIFWAEH 122 Query: 124 LVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 L S FWS++ ++WPW+FL++RKVR++F ++ Sbjct: 123 LFSRASLNFAYFWSTLSTMLIWPWVFLVLRKVRRRFNIK 161 >UniRef50_Q15ZH1 Rod shape-determining protein MreD n=4 Tax=Alteromonadales RepID=Q15ZH1_PSEA6 Length = 158 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 67/151 (44%), Positives = 105/151 (69%) Query: 12 IWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISG 71 I LS ++AL+LQIMP P + +RP+WV L+L YW LALP RVNVG F++G +LD++ G Sbjct: 8 IGLSIIVALVLQIMPMPAIVEQYRPDWVFLVLGYWALALPERVNVGVAFIVGLVLDILLG 67 Query: 72 STLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFR 131 +++GV AMS+ +++A YQ RN ++WQQA+V+ +L + +++VFW L+ ++ F Sbjct: 68 TSIGVHSFAMSLSVFVLAANYQRLRNYSVWQQAVVIGILCALYNLVVFWLMHLLTDIYFM 127 Query: 132 PEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 W + + V+WPWIF L+R+VR+QF + Sbjct: 128 LTYMWPVITSMVIWPWIFWLLRRVRRQFRLS 158 >UniRef50_A6VWN4 Rod shape-determining protein MreD n=2 Tax=Marinomonas RepID=A6VWN4_MARMS Length = 157 Score = 127 bits (320), Expect = 1e-28, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 96/157 (61%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 + +V ++ L AL+L+ MP+P+ L+ FRP W LL++LYW++ALP RV VG + +G + Sbjct: 1 MKPIFVFCITLLTALMLEAMPFPEELVWFRPEWALLVILYWVIALPFRVGVGLAWFLGLM 60 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 +DL+ G +G L IIAY A+ Y+ R WQQ + LL + ++ FW + + Sbjct: 61 VDLLQGGIIGQHSLTYVIIAYTCAVFYKRLRMYHRWQQGFFICLLVSINQLLDFWIDHYL 120 Query: 126 INVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + +F +V+ G+LWPW F+++R VR+ +A++ Sbjct: 121 GHAEPTLMIFMPAVITGLLWPWSFIILRSVRRIYAIR 157 >UniRef50_Q5QWE3 Rod shape-determining protein n=2 Tax=Idiomarina RepID=Q5QWE3_IDILO Length = 161 Score = 125 bits (315), Expect = 5e-28, Method: Composition-based stats. Identities = 66/156 (42%), Positives = 96/156 (61%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 G + ++++IAL L +MP P FRP+W L++LYWI+ALPHRVN+GT V+G + Sbjct: 5 KPGFITLLITYIIALTLMVMPMPAAFDTFRPDWPTLVMLYWIIALPHRVNMGTALVLGVL 64 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 D++ GS +GV L M ++ Y A +Q RN AL QQALV+ +L + +VF A + Sbjct: 65 SDILLGSIVGVHALGMVVVTYFAARHFQRIRNFALIQQALVIAVLIFIKRFVVFEANVFL 124 Query: 126 INVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 + F FW + + V W W+F L+RKVR+QF V Sbjct: 125 HDAEFTFSYFWPVLTSAVFWLWVFPLLRKVRRQFGV 160 >UniRef50_C6MDC7 Rod shape-determining protein MreD n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MDC7_9PROT Length = 191 Score = 122 bits (307), Expect = 3e-27, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 73/149 (48%) Query: 4 YRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMG 63 Y G W I S +I L+L +P +L++ RP++V L + YW + P+++ + F MG Sbjct: 30 YVPAGNWFIATSLIIGLILNFLPLQGDLLISRPDFVALAITYWNVNHPYKLGMSMAFGMG 89 Query: 64 AILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEF 123 ++D+ + LG LA S+I YL + + R +L +QA + L++ I++ Sbjct: 90 LMVDVGNAGILGQHALAYSVIFYLTLIFGRRLRLFSLLKQAPQIGFFLLIMQIVIILIAL 149 Query: 124 LVINVSFRPEVFWSSVVNGVLWPWIFLLM 152 + F ++V +LW LM Sbjct: 150 SNGSALPGWGYFLATVTGTLLWAPASFLM 178 >UniRef50_B7V018 Rod shape-determining protein MreD n=21 Tax=Pseudomonadaceae RepID=B7V018_PSEA8 Length = 164 Score = 122 bits (306), Expect = 4e-27, Method: Composition-based stats. Identities = 53/161 (32%), Positives = 90/161 (55%) Query: 2 ASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFV 61 A+ S WVIWLS L+ L+L + P P + RP W+ ++L YW+L LP RV + T ++ Sbjct: 4 ATQGSNNVWVIWLSLLVGLVLAVAPMPTFTEIGRPLWLAMLLTYWVLLLPERVGMVTAWL 63 Query: 62 MGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWA 121 +G D++ G+ LG L + +I +LV +Q R WQQ LV++++ + ++ W Sbjct: 64 LGLAQDVLYGNLLGQNALILGLITFLVLSLHQRLRMFPAWQQCLVLVVVYGLAQLLQLWL 123 Query: 122 EFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 L N ++V+ +LWPW++ L++ VR + V+ Sbjct: 124 NALTGNRPPTLTFLLPALVSALLWPWVYALLQFVRLRLNVR 164 >UniRef50_Q2YC95 Rod shape-determining protein MreD n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2YC95_NITMU Length = 173 Score = 121 bits (304), Expect = 8e-27, Method: Composition-based stats. Identities = 44/148 (29%), Positives = 74/148 (50%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 W I LS ++ALLL ++P +P++V L++LYW L P RV +G F MG + Sbjct: 14 PAKSWFIMLSLIVALLLNLIPVTGTARTLQPDFVALVMLYWYLNEPQRVGIGMAFWMGLL 73 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 +DL + ST G L S++A++ + + ++QA + L+ L I+ A Sbjct: 74 MDLSNASTFGQHALGYSVMAFMALVFNRRMGIFEGYKQAPQIGLVLLSGQIVTLLAGLFA 133 Query: 126 INVSFRPEVFWSSVVNGVLWPWIFLLMR 153 + F S+V +LWP + ++R Sbjct: 134 GSPFPGWNFFLGSIVGMLLWPLLSAILR 161 >UniRef50_Q07WQ1 Rod shape-determining protein MreD n=21 Tax=Shewanella RepID=Q07WQ1_SHEFN Length = 163 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 57/163 (34%), Positives = 108/163 (66%), Gaps = 1/163 (0%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M+++ + GR V+WL+ I ++ QIMP P + +RP+W+L++++YW +ALPHR ++ T + Sbjct: 1 MSAHIANGRLVVWLTLFIGMMFQIMPLPKMVEAWRPDWLLMVMMYWAMALPHRYSILTAW 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 ++G +LD++ G+ LG+R LA+S++ Y+V L Q RN WQQ+L+V + ++FW Sbjct: 61 LLGVMLDVLLGAHLGIRSLALSLVIYIVVLLCQQLRNYPRWQQSLLVACFICIYHAVIFW 120 Query: 121 AEF-LVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 +F +V F ++F ++ + +W W+F ++R +R+ + V+ Sbjct: 121 VQFVVVGAAPFNVDMFLPAISSLFIWWWVFWVLRNMRRHYKVR 163 >UniRef50_Q0AFP8 Rod shape-determining protein MreD n=2 Tax=Nitrosomonas RepID=Q0AFP8_NITEC Length = 183 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 77/153 (50%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 + +I++S + A+L+ +MP+ ++V RP++V L LLYW + P + + F+ G Sbjct: 24 PARKSLIYISLITAVLINLMPFDKVILVLRPDFVALTLLYWNIYQPQQAGMSIAFISGLF 83 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 +D+I S +G +A +I + + Y+ R +QQ V+ + L +VF L Sbjct: 84 MDVIDVSIMGQHAIAYCLITFFALILYRRLRLFNAFQQIPAVLWILLSGQGVVFLTGILA 143 Query: 126 INVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQ 158 + +F +SV + WP + L+ R+Q Sbjct: 144 GSYIPEWYIFLASVTGALCWPLLVFLLGIFRKQ 176 >UniRef50_B5JU59 Rod shape-determining protein MreD n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JU59_9GAMM Length = 155 Score = 118 bits (297), Expect = 5e-26, Method: Composition-based stats. Identities = 52/149 (34%), Positives = 86/149 (57%), Gaps = 1/149 (0%) Query: 11 VIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLIS 70 ++ + ++A++ ++P P+ FRP+ V L+L+YW LA P ++ + TGF MG +LD++ Sbjct: 4 LVTTTLVLAVIFTLVPLPETAAWFRPDIVALVLMYWWLAHPEKIGIYTGFFMGLLLDVMQ 63 Query: 71 GSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWA-EFLVINVS 129 GS LGV + IIA++ YQ R L L QQAL+V + L+ I FW + S Sbjct: 64 GSLLGVHGCGLVIIAWIFLKNYQRIRVLPLVQQALIVFFVLLIKYFIGFWVDNHRIQGFS 123 Query: 130 FRPEVFWSSVVNGVLWPWIFLLMRKVRQQ 158 F + +LWPW+F+ +R +R++ Sbjct: 124 GTLLYFAPCLTGAILWPWLFVTLRDLRRR 152 >UniRef50_C5SBR5 Rod shape-determining protein MreD n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SBR5_CHRVI Length = 172 Score = 118 bits (296), Expect = 7e-26, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 79/160 (49%) Query: 2 ASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFV 61 + Q W I LS +A+ L I+P D +RP W +L +L+W A P RV + TGFV Sbjct: 12 SYKPRQPFWPIALSLTLAMYLTILPLSDWPWDYRPPWTVLAILFWCFATPRRVGIFTGFV 71 Query: 62 MGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWA 121 +G +LD+++G+ LG L++S+ AYL + R WQQA V L+ L ++ W Sbjct: 72 VGLMLDVLTGALLGQHALSLSVTAYLALVLRPRIRIFPPWQQAFFVALILLTERLLTLWI 131 Query: 122 EFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 + S++V WP + L+ ++ + Sbjct: 132 IGATGQPMPALTYWISALVGLAFWPIMAWLLVPFERRLGL 171 >UniRef50_C6P2H4 Rod shape-determining protein MreD n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P2H4_9PROT Length = 172 Score = 118 bits (295), Expect = 8e-26, Method: Composition-based stats. Identities = 43/152 (28%), Positives = 75/152 (49%), Gaps = 1/152 (0%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 I S +A++L +PW + RP++V L+LLYW PHRV +G +V+G Sbjct: 14 PASTSFIIFSLFVAVMLNWLPWHGWALALRPDFVALVLLYWCTHKPHRVGIGIAWVVGIF 73 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 D+ S G LA +++A+ + ++ + L QQA+ V + L+ + A Sbjct: 74 SDVADASLFGQHALAYTVLAFGGIVLHRRVQMFDLRQQAMHVFPMLLLSYA-AYAAVHWQ 132 Query: 126 INVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQ 157 + E F S V+ +LW + LL++ +R+ Sbjct: 133 VRGYVAWEYFLGSGVSALLWIPMTLLLQALRR 164 >UniRef50_B2SMY7 Rod shape-determining protein MreD n=20 Tax=Xanthomonadaceae RepID=B2SMY7_XANOP Length = 161 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 79/152 (51%) Query: 5 RSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGA 64 R + W++ S IAL+L ++P P + RP W+ L+L YW++ P RV +G FV G Sbjct: 3 RMRNTWILPASIFIALVLGLLPLPTVVQPLRPYWLALVLAYWVIEEPDRVGLGLAFVAGV 62 Query: 65 ILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFL 124 + DL+ G LG + L + I+ +++ R + QQAL + L L I+ Sbjct: 63 LADLLYGGLLGEQALRLVIMTFILQRFRARMRFFPMSQQALAIGGLLLNDRIVSSAVHLA 122 Query: 125 VINVSFRPEVFWSSVVNGVLWPWIFLLMRKVR 156 V + +W+ ++ VLWP +F+++ VR Sbjct: 123 VGEPTLPWSYWWAPLLGIVLWPPLFVVLDAVR 154 >UniRef50_Q7NPY3 Rod shape-determining protein MreD n=2 Tax=Chromobacterium group RepID=Q7NPY3_CHRVO Length = 167 Score = 117 bits (294), Expect = 1e-25, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 78/148 (52%) Query: 5 RSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGA 64 + R I +F+IA+L++++P P + P+++ L++LYW++ P RVN+G F+MG Sbjct: 11 KPVKRRFILTTFVIAVLIELVPLPHGSTRWLPDFIGLLILYWVINQPRRVNIGIAFLMGI 70 Query: 65 ILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFL 124 I D+ + G LA S+ A+L + + L QQALVV+ L L +I+ L Sbjct: 71 IADVSTAGLFGQHALAYSVTAFLALSRQRQLVMFNLGQQALVVLGLMLTNQLIMVVVRML 130 Query: 125 VINVSFRPEVFWSSVVNGVLWPWIFLLM 152 + F ++ +LWP + LM Sbjct: 131 TGSAFVGWSYFLPPLIGALLWPLLTKLM 158 >UniRef50_C5BSY4 Rod shape-determining protein MreD n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BSY4_TERTT Length = 163 Score = 116 bits (291), Expect = 3e-25, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 79/161 (49%) Query: 2 ASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFV 61 + + LS L+ ++P + RP + L++++W++ P ++ + GF+ Sbjct: 3 TPKQRNYALFLGLSIAFGLVFAVLPLTQDFSYLRPELLCLLVIFWVMNSPEQLGMTFGFL 62 Query: 62 MGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWA 121 +G + D++ G +A++IIAY+ + YQ R+ ++W Q+L V +L V ++V W Sbjct: 63 VGLLQDVVELGVWGGHAMALTIIAYICLMSYQRIRSYSVWHQSLWVFILVGVHQVVVNWV 122 Query: 122 EFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + + + + +++ + WP + ++R + Q Sbjct: 123 QGIAGYRTPAHYLVLPTLMTALCWPLVVFFFLRIRHLYRTQ 163 >UniRef50_C0N753 Rod shape-determining protein MreD n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N753_9GAMM Length = 159 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 53/161 (32%), Positives = 94/161 (58%), Gaps = 4/161 (2%) Query: 2 ASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFV 61 + S+ VI L+ ++A+LL ++P P+ FRP WV+L L+YW +ALPHRV++G G++ Sbjct: 3 TTAESRNGVVIILTLIVAMLLMLVPLPETARYFRPEWVVLTLVYWAMALPHRVSIGVGWL 62 Query: 62 MGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWA 121 +G ++D+ G TLG+ + + YL+A + R LWQQAL ++ + +VV ++ Sbjct: 63 VGLLMDVTMGGTLGIMAFSYAFAVYLIARFHLQLRQYPLWQQALTILSVVVVVHLVS--- 119 Query: 122 EFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + ++ + + +LWP +F +RK+R+ F V Sbjct: 120 -VVTSKSESTWLIWMPVLTSTLLWPVMFATLRKIRRTFQVS 159 >UniRef50_B8KR95 Rod shape-determining protein MreD n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KR95_9GAMM Length = 160 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 82/158 (51%) Query: 4 YRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMG 63 R+Q WVI ++ ++ALLL P P FRP LL+L YW+LALP RV + + V+G Sbjct: 2 ERAQAVWVIPVTLMVALLLHAAPLPFEWRWFRPELPLLVLFYWVLALPQRVGLLSAAVIG 61 Query: 64 AILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEF 123 +DL+ GS LG L + + ++ YQ R L+QQ L++ LL + + W Sbjct: 62 IGIDLLEGSALGGLALGLVVSTLVLLFTYQRIRQFNLFQQCLLMGLLIALALTVENWVHK 121 Query: 124 LVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 + + + W ++V+ W I +R +R+ + V Sbjct: 122 FMALPTGGMQFLWPALVSMPFWAVIRKPLRGLRRYYGV 159 >UniRef50_A4BGL4 Rod shape-determining protein MreD n=1 Tax=Reinekea blandensis MED297 RepID=A4BGL4_9GAMM Length = 161 Score = 116 bits (290), Expect = 3e-25, Method: Composition-based stats. Identities = 50/162 (30%), Positives = 89/162 (54%), Gaps = 1/162 (0%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M G W+I ++F + L +P + RP+WV +++++W+L LP R + F Sbjct: 1 MKQKPPHGLWLIIITFFVGFFLAAIPM-GRFEIARPDWVGMLIIFWVLVLPERFGIFVSF 59 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 +G + D ++G+TLG+ S +AY V L + R L QQA+VV L+ V I+ W Sbjct: 60 GVGILFDTLAGTTLGLYAFVYSGLAYTVLLLHARLRMYPLGQQAMVVFLILGVTHIVAQW 119 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + +++V W ++ + V+WPW++ L+R ++ +F VQ Sbjct: 120 LKVWLMSVVSGELHIWPALTSAVVWPWVYGLLRTLQIKFRVQ 161 >UniRef50_A4BLX4 Rod shape-determining protein MreD n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BLX4_9GAMM Length = 134 Score = 116 bits (290), Expect = 4e-25, Method: Composition-based stats. Identities = 48/133 (36%), Positives = 74/133 (55%) Query: 30 NLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVA 89 RP W LIL+YW +ALP RV V + +G + D++ G LG LA S+ A+L Sbjct: 2 WAKPLRPEWTALILIYWCMALPQRVGVTVAWTVGLLQDVLQGFLLGAHALAFSVAAFLTL 61 Query: 90 LKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPWIF 149 ++ R LWQQAL +LL LV+ +I+ W L+ + + + ++ LWP +F Sbjct: 62 KLHRQIRVFPLWQQALSTLLLLLVIRLILLWTRGLIGHPGVDWQYWLPALTGAALWPPLF 121 Query: 150 LLMRKVRQQFAVQ 162 L +R VR++F V+ Sbjct: 122 LGLRAVRRRFQVR 134 >UniRef50_Q60CK4 Rod shape-determining protein MreD n=1 Tax=Methylococcus capsulatus RepID=Q60CK4_METCA Length = 163 Score = 115 bits (288), Expect = 5e-25, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 92/158 (58%) Query: 3 SYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVM 62 + R+ R +I+ S A+ ++I+P P + ++ P+W+LL+L+YW + P RV VGT ++ Sbjct: 4 TRRTPSRILIFASLAAAMAMRIVPLPQDWALWNPDWILLVLIYWAVMAPDRVGVGTAWLT 63 Query: 63 GAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAE 122 G + D ++G LG LA S++ Y+ ++ FR ++ QQ L V+LL + ++ W Sbjct: 64 GLLADALTGRLLGQDALAYSVVIYVGVRFHRRFRVYSMVQQVLAVVLLLGLGLLLTLWTR 123 Query: 123 FLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFA 160 + S +++++ G++WPW+ + + +R+++ Sbjct: 124 HIRGLASAPEGYWFAALSGGLVWPWVRVALDGLRRRYG 161 >UniRef50_A1WVS1 Rod shape-determining protein MreD n=2 Tax=Ectothiorhodospiraceae RepID=A1WVS1_HALHL Length = 163 Score = 115 bits (288), Expect = 6e-25, Method: Composition-based stats. Identities = 67/163 (41%), Positives = 101/163 (61%), Gaps = 1/163 (0%) Query: 1 MASYRSQ-GRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTG 59 M +R + G +I LSF+IAL+L I+P P FRP W LILLYW LALP RV VG G Sbjct: 1 MTGHRPRNGGGIILLSFIIALMLTIVPMPGWAQEFRPEWTALILLYWGLALPERVGVGVG 60 Query: 60 FVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVF 119 +++G D + G+ LG LA ++IA+L +Q R + +WQQA+VV+ L +V ++VF Sbjct: 61 WLVGLFQDALLGTLLGQHALAFALIAFLALRLHQHLRLVPVWQQAVVVLGLLVVAQLVVF 120 Query: 120 WAEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 W ++ + + + + +V +WP +F +MR VR++F VQ Sbjct: 121 WINGIIGRPAPEWQAWAAILVGAAIWPLVFHIMRGVRRRFQVQ 163 >UniRef50_B8GL91 Rod shape-determining protein MreD n=2 Tax=Thioalkalivibrio RepID=B8GL91_THISH Length = 163 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 56/152 (36%), Positives = 89/152 (58%) Query: 10 WVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLI 69 W I L+F++AL L ++P PD +RP W+ + L+YW +ALP R+ VG G+ +G +LD Sbjct: 9 WAIPLTFIVALALTVVPLPDWAAPWRPQWLAMTLIYWSMALPRRIGVGLGWFLGLLLDAA 68 Query: 70 SGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVS 129 +G+ LG L ++IAYL +Q R LWQQAL V L + ++V W + Sbjct: 69 TGALLGQHALGFALIAYLSIRMHQRVRVFPLWQQALTVGGLLALHLLLVLWILGMTGRAP 128 Query: 130 FRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 + V + +LWPW+F+L+R VR+++ + Sbjct: 129 GTWLYWAPLVSSMILWPWLFVLLRDVRRRWCL 160 >UniRef50_A4A5B4 Rod shape-determining protein MreD n=1 Tax=Congregibacter litoralis KT71 RepID=A4A5B4_9GAMM Length = 161 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 54/160 (33%), Positives = 91/160 (56%) Query: 3 SYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVM 62 S R WVI S L A +L ++P L+ +RP W+LL+L+YW +ALPHRV + T V+ Sbjct: 2 SERMNAYWVILASLLFAAVLAVIPLTRALLWWRPEWILLVLVYWTIALPHRVGLVTALVV 61 Query: 63 GAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAE 122 G +D++ G+ +G +L++S++ L L YQ R L QQ+ V+ LL+ + +I W + Sbjct: 62 GLFVDVMEGAVIGQNMLSLSVVVTLAGLMYQRLRVFTLVQQSSVIFLLAGLHQLITQWLQ 121 Query: 123 FLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 L + ++ +LWP + L+R++R+ + V Sbjct: 122 GLQGGAVPGFGFLFPALSTALLWPLLMPLLRELRRSYKVH 161 >UniRef50_Q1QVB9 Rod shape-determining protein MreD n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QVB9_CHRSD Length = 159 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 60/157 (38%), Positives = 95/157 (60%) Query: 5 RSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGA 64 R G IWL+ +I+L LQ+MP PD +++RPNW+ L L YW + P RV V GFV G Sbjct: 2 RLPGLIAIWLTLVISLCLQVMPLPDAWLMWRPNWLGLALAYWCVTAPQRVGVFHGFVCGL 61 Query: 65 ILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFL 124 +LDLI G+ LG L +S++ YL L YQ R ++WQQA+++ +L ++ ++ W + Sbjct: 62 LLDLIEGTPLGQNALTLSLLTYLCLLLYQRLRAYSIWQQAVMLFVLLGLIQLVEQWLRTI 121 Query: 125 VINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 VS +++ G LWPW+F +M+ +R++ + Sbjct: 122 FGPVSIHLAFLLPALIGGALWPWLFTMMQVLRRRLGI 158 >UniRef50_B7RTI7 Rod shape-determining protein MreD n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=B7RTI7_9GAMM Length = 162 Score = 113 bits (284), Expect = 2e-24, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 90/162 (55%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M W++ SF AL+L ++P+P L RP WVLL+L+YW++ALP RV + T Sbjct: 1 MVDQGPNAYWLVLASFFCALILAVLPFPHWLAWGRPEWVLLVLVYWVIALPQRVGLITAL 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 ++G +LD++ G+ +G A+ ++ L L YQ R +L QQA +V +L+ + +I W Sbjct: 61 LLGLMLDVVEGAVIGQNAFALVVVTLLALLLYQRLRVFSLAQQAAIVFVLAGLNQMICQW 120 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + L S + + +LWP++ L+R +R+ + V Sbjct: 121 VQNLEGAGSTTLMFLLPAFSSALLWPFVLHLLRGLRRLYGVS 162 >UniRef50_B3PC04 Putative rod shape-determining protein MreD n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PC04_CELJU Length = 161 Score = 113 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 68/140 (48%) Query: 23 QIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMS 82 + P P +RP +VL++ +YW+L +P V++ V+G DL+ G L + Sbjct: 22 SVYPLPFIWQWWRPEFVLVVAIYWMLNMPQSVSLVFLCVLGLFQDLLESVPFGQHSLGLI 81 Query: 83 IIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVVNG 142 I+AY+ L YQ RN W+QA V +L + + W + + + +V + Sbjct: 82 IVAYICFLSYQRVRNFPRWKQAGWVFVLVGIAQLTDNWVQSMAGRQLSGVAFLYPAVTSA 141 Query: 143 VLWPWIFLLMRKVRQQFAVQ 162 + WP+ + + ++ Q++ + Sbjct: 142 IFWPFCCVWLDRLCQRYQLH 161 >UniRef50_B5F9L8 Rod shape-determining protein MreD n=89 Tax=Gammaproteobacteria RepID=B5F9L8_VIBFM Length = 163 Score = 113 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 85/161 (52%), Positives = 120/161 (74%) Query: 2 ASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFV 61 +S+ +GR +IWLSFLIAL LQ PWP L V RP+W++L+ YW+LALPHRVNVGT V Sbjct: 3 SSHLMRGRVIIWLSFLIALTLQAAPWPGALEVLRPSWIILVTFYWVLALPHRVNVGTAMV 62 Query: 62 MGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWA 121 +G + DL+ G+TLG+R + M+I+ YLVA +++ RNLALWQQA + L+L+ I+ F Sbjct: 63 LGILWDLLLGTTLGIRGMTMAILVYLVAANFKVLRNLALWQQAAIFSGLTLLGKILEFMG 122 Query: 122 EFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 EFLV +VSF W+ V+N +LWPW+FLLMR+VR+ ++++ Sbjct: 123 EFLVHDVSFNAHFLWAGVLNFLLWPWLFLLMRRVRRHWSIR 163 >UniRef50_A0Z7H0 Rod shape-determining protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z7H0_9GAMM Length = 160 Score = 111 bits (279), Expect = 6e-24, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 79/156 (50%) Query: 7 QGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAIL 66 +G WVI S LIALLL +P P + + P+W LL L YW+LALP+RV V + V+G + Sbjct: 5 RGSWVIVGSILIALLLVAIPVPVSWREYTPDWPLLFLFYWVLALPNRVGVLSACVVGILT 64 Query: 67 DLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVI 126 DL+ GS G + + ++ + YQ R +Q LV+ LL +V ++ E + Sbjct: 65 DLLDGSPAGATAIGAVMAVLVILVSYQRIRQFDGLKQGLVMALLISLVHLVEQRLETFLG 124 Query: 127 NVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + V+ + W + +R R+ + VQ Sbjct: 125 WQHSSTAFLMPAAVSFLFWVPVRNCLRFFRRYYEVQ 160 >UniRef50_A1U482 Rod shape-determining protein MreD n=3 Tax=Marinobacter RepID=A1U482_MARAV Length = 158 Score = 111 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 80/150 (53%) Query: 11 VIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLIS 70 + ++ +++L+L I +P + FRP W+ LI+ YW P + + + +G +LD++ Sbjct: 9 LFAITVVLSLVLSISLFPVDWFQFRPEWLGLIVFYWTFRAPAQFGILMAWCLGLLLDILE 68 Query: 71 GSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSF 130 + LGV + M++IA+LV +Q R L QQ L+V LL + ++V + + L+ S Sbjct: 69 STPLGVNAMGMALIAFLVLTIHQRLRMYPLPQQCLMVFLLLGINQMLVHFVKQLLGAESA 128 Query: 131 RPEVFWSSVVNGVLWPWIFLLMRKVRQQFA 160 W ++ + + WP + ++ + ++ Sbjct: 129 GFSYLWPALTSALAWPVVSGVLDTINRKLG 158 >UniRef50_Q1ZG63 Hypothetical rod shape-determining protein MreD n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZG63_9GAMM Length = 157 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 55/156 (35%), Positives = 91/156 (58%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 + +I+++F +ALL I P P L FRP+W++LI+ YW+LA P R+ + F +G I Sbjct: 1 MRHYSIIYITFFVALLCAIFPLPIFLNAFRPDWMILIIFYWVLATPQRIGIVHAFFIGLI 60 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 LD++ GS LG+ L S++AY V + +Q R L Q L++ + +L + + ++W Sbjct: 61 LDILLGSMLGMHALLFSLLAYFVCVDFQRIRYFTLVQTTLLIGIAALCIKLSLYWIASTQ 120 Query: 126 INVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 ++ FWS + ++WPW FL +R VR +F V Sbjct: 121 QDILLHKSYFWSIFSSMLIWPWFFLFLRMVRIRFKV 156 >UniRef50_C4GIM3 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GIM3_9NEIS Length = 167 Score = 109 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 83/159 (52%) Query: 4 YRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMG 63 Y + +I++SFL+A+L+ +P +L + P + L+L+YWI+ P V++GT F++G Sbjct: 8 YSKIQKRLIYISFLLAILIDFIPLSGSLFHWLPEFTALMLMYWIINRPQNVDIGTAFILG 67 Query: 64 AILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEF 123 ++D+ + ++LG LA I AY+V + QA+V+ L ++I+ + Sbjct: 68 LLMDIGTNASLGGHALAYVIAAYIVIQNRRQIVLYHYGVQAVVIFAALLCSEMILTVVRW 127 Query: 124 LVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + + VF S VV +LWP + +M + + Sbjct: 128 RYTHHFYGWTVFLSPVVGALLWPLLNKIMVSLLNFLNSR 166 >UniRef50_A9N8Z0 Rod shape-determining protein MreD n=7 Tax=Coxiella burnetii RepID=A9N8Z0_COXBR Length = 162 Score = 108 bits (271), Expect = 5e-23, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 90/161 (55%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M ++ I L+ ++A++L I+P P + ++P W+ ++LL+W++ALP+RV +G F Sbjct: 1 MEGNYAKDVLAIGLTLIMAMMLTILPLPAWAVWYQPAWIFMVLLFWMIALPYRVGIGAAF 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 + G + DL+SG+ LG L +IIAY + R+L WQQ ++V + + V + +W Sbjct: 61 IWGLLFDLLSGTILGQHALIFTIIAYFIIRFQTPLRSLPNWQQMILVFIATAVYLALQYW 120 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 + + + + +LWPW+ +L++ + +F + Sbjct: 121 IMAMADASPETAKYWLPLMSTTLLWPWVRVLLKDYQSRFRL 161 >UniRef50_Q0VS68 Rod shape-determining protein MreD n=2 Tax=Alcanivorax RepID=Q0VS68_ALCBS Length = 163 Score = 108 bits (271), Expect = 5e-23, Method: Composition-based stats. Identities = 55/163 (33%), Positives = 95/163 (58%), Gaps = 1/163 (0%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M S R G VI ++ L+A LL+++P P ++ RP W+LL+L+YW+L LPHR+ V GF Sbjct: 1 MVSDRPAGTGVIIVTLLLAALLEVIPLPASIDWIRPEWMLLVLVYWVLVLPHRIGVLWGF 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 +G D++ G+TLG LA ++ A+++ Y+ R QQ V+ LL V ++ F Sbjct: 61 FVGLYHDVLVGTTLGQWGLATALGAFVMLAAYKRMRVFNGLQQCAVIFLLVGTVSLLAFL 120 Query: 121 AEFLVINVSFRP-EVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + V + P + +SSV + ++W + ++R ++ +F V+ Sbjct: 121 VQESVGRTLYPPYTILYSSVSSALVWRPVCAVLRWIQLRFLVR 163 >UniRef50_Q21FT2 Rod shape-determining protein MreD n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21FT2_SACD2 Length = 162 Score = 108 bits (269), Expect = 1e-22, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 68/149 (45%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M + +S AL+L I P P RP L+++YW++ P V T + Sbjct: 1 MPNLGLSFYIFFCVSAFFALVLSIYPIPHAYAALRPELFCLLVVYWVINYPQYFGVTTAW 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 +MG LD++ + G L ++ +AY+ YQ R+ +LWQQ L V + + +IV W Sbjct: 61 LMGLFLDVVHSTVWGAHALGLAAVAYICLSSYQRIRSYSLWQQTLWVFVFVGIHQVIVNW 120 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIF 149 L + ++ V+ + WP + Sbjct: 121 MLGLSGYHKPTHIILVTTAVSALSWPVMV 149 >UniRef50_Q7VRC2 Rod shape-determining protein MreD n=2 Tax=Candidatus Blochmannia RepID=Q7VRC2_BLOFL Length = 162 Score = 105 bits (263), Expect = 5e-22, Method: Composition-based stats. Identities = 57/150 (38%), Positives = 104/150 (69%) Query: 12 IWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISG 71 I+ SF +A++LQ + + +P+W +++L+YWI+ +P+++N+GTGF +G ILD IS Sbjct: 12 IYCSFAVAIILQYVLFFSITWYLQPSWTMMLLIYWIVLIPNKINIGTGFFLGLILDCISC 71 Query: 72 STLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFR 131 STLG++ L+MSII+YL K LFR+ +WQQ++ ++L S + I F +FL+ +VS+ Sbjct: 72 STLGIQTLSMSIISYLTIRKIYLFRHTYVWQQSIFIVLFSFINQNIKFLIQFLMFSVSYS 131 Query: 132 PEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 P++F++ +++G++WP + L+ K+ + Sbjct: 132 PKIFYNCILDGIMWPVLIFLIHKINNSSKI 161 >UniRef50_Q1MYL6 Rod shape-determining protein MreD n=1 Tax=Bermanella marisrubri RepID=Q1MYL6_9GAMM Length = 155 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 1/155 (0%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 VI +F +A +L ++P+P + RP WV + L++W + P R + GF MG + Sbjct: 1 MNAYAVILPTFFLAFVLSVLPFPRLIDFIRPEWVAMTLIFWCVLSPGRAGIFLGFFMGLL 60 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 D++ G LG LA+S++ YL AL R QQ+ +V ++ + ++ FW E L+ Sbjct: 61 FDVLHGQLLGQSALALSVLGYLCALMQSRMRIYNPLQQSFMVFVMVGLYLLMSFWIESLM 120 Query: 126 INVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFA 160 V + + W SV + ++WP + L+ +RQ F Sbjct: 121 G-VDRKTALLWPSVGSALIWPLWYNLLFAIRQFFR 154 >UniRef50_C7RML3 Rod shape-determining protein MreD n=3 Tax=Betaproteobacteria RepID=C7RML3_9PROT Length = 173 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 2/143 (1%) Query: 10 WVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLI 69 W I + LIALL +P + V P+WV L L++W + P RV +G F+ G +D+ Sbjct: 17 WFIASTLLIALLFNFLPTANWPGV--PDWVALALVFWCVREPRRVGMGLAFLFGLAMDVA 74 Query: 70 SGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVS 129 S LG LA ++AY + + L QQAL V L L+V ++ +V Sbjct: 75 DASLLGQHALAYVLVAYGASSLSRRILWFPLGQQALQVFPLLLLVQLVQLGVRTIVGADF 134 Query: 130 FRPEVFWSSVVNGVLWPWIFLLM 152 F + +LWP + ++ Sbjct: 135 PGLAYFVGPCLAALLWPLLTFVL 157 >UniRef50_C5V1V9 Rod shape-determining protein MreD n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V1V9_9PROT Length = 170 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 1/153 (0%) Query: 5 RSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGA 64 R I S + ALLL +PW + P++V ++LLYW P R+ VG + +G Sbjct: 13 RPVSTMFIVTSIVTALLLNGLPWGGLWLTLHPDFVAVVLLYWCTHKPLRIGVGLSWAIGI 72 Query: 65 ILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFL 124 + D+ S G LA +++A+ + + R L +Q V+++ + + Sbjct: 73 LADVGDASLFGQHALAYTLLAFGGVVLSRRIRMFDLREQTTQVLVILFSTYAVYALVQ-W 131 Query: 125 VINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQ 157 +N F + + +LW + L + +RQ Sbjct: 132 QVNGQIVWTYFLGCLTSTLLWVPMSSLFQSMRQ 164 >UniRef50_Q0KFF4 Rod shape-determining protein MreD n=12 Tax=Burkholderiales RepID=Q0KFF4_RALEH Length = 170 Score = 103 bits (258), Expect = 2e-21, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 2/154 (1%) Query: 5 RSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGA 64 R I SF++A L +MPW L + P+ V L+L++W + P +V +G F++G Sbjct: 9 RPVNPAFIAFSFVLAFLFNLMPWGTTL--WVPDMVALVLVFWNIHQPRKVGMGVAFLLGL 66 Query: 65 ILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFL 124 ++D+ LG LA +++AY ++ ++ QAL V+ L VV + Sbjct: 67 LMDVHDARLLGEHALAYTLLAYFAITIHRRVLWFTVYTQALHVLPLLFVVHAVPVLIRLA 126 Query: 125 VINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQ 158 + ++ + + +LWP L+ +++ Sbjct: 127 MGAPLPGWQLLLAPAIEALLWPLATSLLLAPQRR 160 >UniRef50_Q1GYC9 Rod shape-determining protein MreD n=3 Tax=Methylophilaceae RepID=Q1GYC9_METFK Length = 159 Score = 103 bits (256), Expect = 3e-21, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 72/139 (51%) Query: 12 IWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISG 71 ++LS L+ALL+QI+PW +L+ RP ++LL +LYW L PH N+GT + G ++DL SG Sbjct: 9 VYLSLLVALLMQILPWSGSLLTIRPEFLLLTVLYWTLRAPHLCNIGTAWFAGLMMDLASG 68 Query: 72 STLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFR 131 G LA S ++ + +WQQA V LL L+ +I + Sbjct: 69 GLFGQFALAYSAASFFAVSYQRRLALFNIWQQAGYVFLLLLLSQVITLVLKLFSGGELPG 128 Query: 132 PEVFWSSVVNGVLWPWIFL 150 + F SV +LW ++ Sbjct: 129 WQYFLPSVSGILLWQFVTF 147 >UniRef50_C7I0H6 Rod shape-determining protein MreD n=4 Tax=Burkholderiales RepID=C7I0H6_THIIN Length = 178 Score = 98.4 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 2/137 (1%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 W I LS L+ALL+ +P + P+ V L L++W + P RV + FV+G Sbjct: 18 PVNPWFIALSLLMALLIDFLPLGRLA--WMPDMVALTLVFWNVHQPRRVGMAVAFVLGLA 75 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 +D+ GS LG L ++++Y ++ A QQAL V+ L + +++ Sbjct: 76 VDVQQGSVLGQHALIYTVLSYFAITLHRRLLWFAPLQQALHVLPLFVATQVLLLLVGMWA 135 Query: 126 INVSFRPEVFWSSVVNG 142 + V Sbjct: 136 GGSFPGWAFLLAPFVQA 152 >UniRef50_C1D5N3 MreD n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D5N3_LARHH Length = 168 Score = 98.4 bits (244), Expect = 7e-20, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 1/153 (0%) Query: 5 RSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGA 64 R + I LS +AL+++++P P++V L++LYW + P R +G F++G Sbjct: 9 RPVRKRWIALSLALALVVELLPLSGPAR-LTPDFVALLVLYWNINQPSRFGIGLSFLVGL 67 Query: 65 ILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFL 124 I D S +G LA ++I+YLV L+ + +L QQAL+V+ L L+ I++ A Sbjct: 68 IGDFFSAGLIGQHALAYTVISYLVLLRQRQIAMYSLGQQALIVLGLLLLSQAIMWLARMA 127 Query: 125 VINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQ 157 + V F S V +LWP + ++ ++ Sbjct: 128 LGGVVVGWSYFMSPFVGALLWPLLTTILLWPQR 160 >UniRef50_Q21RI3 Rod shape-determining protein MreD n=66 Tax=Burkholderiales RepID=Q21RI3_RHOFD Length = 176 Score = 97.6 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 71/155 (45%), Gaps = 2/155 (1%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNL--IVFRPNWVLLILLYWILALPHRVNVGTGFVMG 63 + IW S + ALLL ++ + P+ + L+L++W + P R+ +G FV G Sbjct: 12 PANPFFIWGSLVAALLLNMLQNMGLWGRAAWMPDLLALVLVFWSIHQPQRIGIGAAFVFG 71 Query: 64 AILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEF 123 +D+ G+ LG L+ +++++L ++ + QA V+ L + I Sbjct: 72 IFVDVHQGAMLGQHALSYTVLSFLAIAIHRRLLWFPVPSQAFQVLPLFVAAHAIALSVRM 131 Query: 124 LVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQ 158 L + + ++ +LWP + +L+ +++ Sbjct: 132 LAGGGFPGFWLLLAPLIESLLWPVVSVLLLMPQRR 166 >UniRef50_C0DXR0 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DXR0_EIKCO Length = 167 Score = 97.6 bits (242), Expect = 1e-19, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 73/159 (45%) Query: 4 YRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMG 63 S + + SFL+ LL+ +P P++ L++L YW+L P + +G F +G Sbjct: 8 KESTPKRWVAFSFLLVLLIDFIPVAPPWAYPLPDFTLIMLAYWLLHRPQLIGIGVAFCLG 67 Query: 64 AILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEF 123 ++D+ S S LG LA S+ A+L+ + + QA+ V LV ++VF Sbjct: 68 LLVDIGSNSLLGQHGLAYSVAAFLIERNRRQIVLNSFGWQAVAVAGAMLVSQLVVFLVSL 127 Query: 124 LVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 ++ S+V G+LWP + +M + + Sbjct: 128 FQQQPFPLWRLWLPSIVTGLLWPQLNNVMLAIAHYRRPR 166 >UniRef50_Q8D1V7 MreD protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D1V7_WIGBR Length = 168 Score = 96.1 bits (238), Expect = 4e-19, Method: Composition-based stats. Identities = 51/152 (33%), Positives = 96/152 (63%) Query: 10 WVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLI 69 ++I+ FLI+L+LQI+ WP N + +P+WV +I +L P ++N+GTGF++G ILDL Sbjct: 10 FIIYSLFLISLILQIISWPQNFNLLKPSWVYIIFSCLLLIYPEKINIGTGFILGLILDLH 69 Query: 70 SGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVS 129 GSTLG+ +++S +AYL+ + + F +L++Q+L + +V + + + ++ N Sbjct: 70 LGSTLGMHSISISFLAYLILINIKYFYKTSLFKQSLYISFFISIVKLSILIIQLVISNTL 129 Query: 130 FRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 + F + +++ ++WPWIF L++ + F V Sbjct: 130 LQINFFENILIDIIMWPWIFSLIKNILCYFNV 161 >UniRef50_A1K1T9 Rod shape-determining protein n=4 Tax=Rhodocyclaceae RepID=A1K1T9_AZOSB Length = 173 Score = 95.7 bits (237), Expect = 5e-19, Method: Composition-based stats. Identities = 38/142 (26%), Positives = 65/142 (45%), Gaps = 2/142 (1%) Query: 11 VIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLIS 70 I+ S ++AL L +P V P+WV L+L +W + P R+ +G GF+ G ++D+ Sbjct: 18 FIYFSLMVALALAYVPTGRFPGV--PDWVALVLAFWCIREPLRIGMGAGFLFGVLVDIGQ 75 Query: 71 GSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSF 130 G+ +G LA ++AYL + QAL V+ + L +++ + Sbjct: 76 GAAMGQHALAYVVLAYLATGLARRVMWFPPLLQALHVLPMLLASQMLMVAVRLIAGAEFP 135 Query: 131 RPEVFWSSVVNGVLWPWIFLLM 152 F SS LW + L+ Sbjct: 136 GWAYFLSSFTAVALWVPLNYLL 157 >UniRef50_A9I0I9 Rod shape-determining protein MreD n=5 Tax=Bordetella RepID=A9I0I9_BORPD Length = 187 Score = 94.5 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 23/130 (17%), Positives = 55/130 (42%) Query: 28 PDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYL 87 P + P+ + L+L +W + P RV + F G ++D+ S LG L+ ++ AY Sbjct: 48 PWRVWEGAPDILALVLAFWCVHEPRRVGLVAAFCFGVLMDVHDASVLGGHALSYTLTAYG 107 Query: 88 VALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPW 147 ++ + LW QA+ ++ + + ++ + + ++ +WP Sbjct: 108 AVALHRRLQRFDLWSQAMHMLPVFFLARLVQQMVLAWLAGKWPGWDWTLGVLLTVAIWPL 167 Query: 148 IFLLMRKVRQ 157 ++ ++ Sbjct: 168 AGWVLHLPQR 177 >UniRef50_Q2SBH0 Cell shape-determining protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SBH0_HAHCH Length = 157 Score = 94.5 bits (234), Expect = 1e-18, Method: Composition-based stats. Identities = 40/147 (27%), Positives = 73/147 (49%) Query: 11 VIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLIS 70 + + +A + ++P FRP + +++ YW L P + G+ +G + D++ Sbjct: 10 LFVFTLFLAFCVSLIPLGGFAAYFRPESICMVMFYWTLKHPGACGILVGWCVGLLWDVLM 69 Query: 71 GSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSF 130 GSTLGV LA+++ AYLV Q + L QQ+ VV ++ +V ++ W L+ + Sbjct: 70 GSTLGVHALALALQAYLVLKMLQRLQMFPLIQQSFVVFIIVGIVLMLFRWINGLLAQPAT 129 Query: 131 RPEVFWSSVVNGVLWPWIFLLMRKVRQ 157 ++ + +LWP LLM K+ Sbjct: 130 DMAYLLGALSSALLWPLFSLLMEKLEN 156 >UniRef50_A1STZ6 Rod shape-determining protein MreD n=1 Tax=Psychromonas ingrahamii 37 RepID=A1STZ6_PSYIN Length = 133 Score = 93.4 bits (231), Expect = 3e-18, Method: Composition-based stats. Identities = 54/132 (40%), Positives = 83/132 (62%) Query: 30 NLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVA 89 L FRP+W++LI+ YW+LALPHRV++ F++G + DL+ GSTLG+ L S +AY+V Sbjct: 1 MLNAFRPDWMILIIFYWVLALPHRVSIVHAFILGVVFDLLLGSTLGMHALLFSFLAYIVI 60 Query: 90 LKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPWIF 149 YQLFR L Q L+V L SL+ + ++ + ++ FWS + ++WPW F Sbjct: 61 TNYQLFRYFTLVQTTLLVGLYSLLSKLALYLMASSLQDIILHQSYFWSVFTSMLVWPWFF 120 Query: 150 LLMRKVRQQFAV 161 L +R +R++F V Sbjct: 121 LFLRFIRRRFKV 132 >UniRef50_UPI00016994A6 Rod shape-determining protein MreD n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI00016994A6 Length = 106 Score = 92.6 bits (229), Expect = 4e-18, Method: Composition-based stats. Identities = 42/98 (42%), Positives = 61/98 (62%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M + ++ L+ +L +MP PD FRP WV LIL+YW +ALP RVNVGTG+ Sbjct: 1 MNANVQGRLYIAHLTLAFGFVLAVMPMPDWASNFRPQWVTLILIYWCMALPERVNVGTGW 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNL 98 + G +LD++SGS LG LA++++++L YQ R L Sbjct: 61 LAGLLLDVLSGSMLGQHALALAVVSFLTLNIYQRVRVL 98 >UniRef50_B5EMQ8 Rod shape-determining protein MreD n=3 Tax=Acidithiobacillus RepID=B5EMQ8_ACIF5 Length = 158 Score = 91.1 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 34/151 (22%), Positives = 74/151 (49%) Query: 11 VIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLIS 70 V+ L F AL+ + +P P++V L+LLYW ++ ++ +++G + D++ Sbjct: 5 VVVLGFFFALVAEAIPCGPFYASLHPDFVALLLLYWAISSASELSFTVVWLIGLLQDMVL 64 Query: 71 GSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSF 130 G LG + +A ++ YL+ R+LA W+Q + +L L ++V+ + +++ Sbjct: 65 GDVLGAQAIAGVVMIYLLYTGIARVRSLASWEQLFFIFMLLLAHRLLVWSWQAWAGTITW 124 Query: 131 RPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 + ++ +LWP L + +R + Sbjct: 125 HFSLLLGPLIGALLWPLFTLTLDYLRHALRL 155 >UniRef50_P44476 Rod shape-determining protein mreD n=32 Tax=Pasteurellaceae RepID=MRED_HAEIN Length = 162 Score = 91.1 bits (225), Expect = 1e-17, Method: Composition-based stats. Identities = 61/153 (39%), Positives = 102/153 (66%) Query: 10 WVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLI 69 + I F+IA +L++ PWP + +P W++L+LLYW+LA+P++V++G F++G DLI Sbjct: 10 FTILSFFVIAFVLELAPWPVGFQMLKPAWLVLVLLYWVLAIPNKVSIGWSFLLGLTWDLI 69 Query: 70 SGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVS 129 GSTLGV L +S Y++A Y + RNL+LW Q+L+V+L ++ +++F EF + Sbjct: 70 LGSTLGVHALVLSTSMYIIAKNYLILRNLSLWFQSLLVVLFVFIIRLLIFLVEFSLHTAF 129 Query: 130 FRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 F + + +G+LWPW+FLLMRK+R++ + Sbjct: 130 FHWQAILGAFASGLLWPWVFLLMRKIRRKVKLH 162 >UniRef50_A8PNB8 Rod shape-determining protein MreD n=1 Tax=Rickettsiella grylli RepID=A8PNB8_9COXI Length = 161 Score = 90.3 bits (223), Expect = 2e-17, Method: Composition-based stats. Identities = 44/143 (30%), Positives = 80/143 (55%) Query: 11 VIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLIS 70 + +SF A+LL I+P P +F P W+ L+L+YWI+ LP ++ +++G +D++ Sbjct: 11 FMVISFSGAILLNILPLPPMFALFFPLWLPLVLIYWIMVLPGHIHFTLAWLLGLFIDVLY 70 Query: 71 GSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSF 130 GS LG LA+ ++AYL + FR + QQ L V ++ ++ I+ + + V Sbjct: 71 GSYLGEHSLALCVVAYLAYRFHLQFRMFPVPQQMLFVFVMLIIYQTILIVTQAWLGFVID 130 Query: 131 RPEVFWSSVVNGVLWPWIFLLMR 153 V+ S +++ ++WP I L+R Sbjct: 131 FRWVWISLLMSALIWPLITYLLR 153 >UniRef50_D0L063 Rod shape-determining protein MreD n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L063_HALNC Length = 155 Score = 89.5 bits (221), Expect = 4e-17, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 73/149 (48%) Query: 11 VIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLIS 70 +I LS L+AL+L + P + P W+LL +LYW + P+ V + ++ G +LD+ S Sbjct: 7 MIPLSLLVALILTVEPSVPLYQHYSPQWLLLTVLYWCIREPNSVGLIVAWMSGLVLDVAS 66 Query: 71 GSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSF 130 LG L ++ A +V Q+ QQAL V LS + ++ W + + +++ Sbjct: 67 VGLLGANALLFTLSAAVVLGLRQMLFFTGPVQQALFVAGLSAIYLLLSLWMQGGISDLTM 126 Query: 131 RPEVFWSSVVNGVLWPWIFLLMRKVRQQF 159 N V WP I ++ +R+++ Sbjct: 127 LLHNLVRVASNLVAWPIILMVFHLLRRRY 155 >UniRef50_B0VS17 Rod shape-determining protein n=17 Tax=Acinetobacter RepID=B0VS17_ACIBS Length = 163 Score = 89.2 bits (220), Expect = 4e-17, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 2/154 (1%) Query: 4 YRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMG 63 R W I LS ++ +L I P ++ +RP ++L+I+L+W++ P V F MG Sbjct: 10 KRKDPLWGIILSIIVGSVLMIYPLSYDISGWRPLFMLMIMLFWVVCQPTWCGVWFAFGMG 69 Query: 64 AILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEF 123 DL+ + LG+ L+ I+ ++ + R L + L ++ + W Sbjct: 70 IFTDLLLDAPLGLNALSFVIVTFITRFLIRERRILTFGN-LWTIATLVIIAHLAFMWVTQ 128 Query: 124 LVINVSFRPEVFWSSVVNGVL-WPWIFLLMRKVR 156 + + F W ++ +L WP ++ + K R Sbjct: 129 TMGGIHFSIARHWQPLMTSILTWPVVYYCLAKWR 162 >UniRef50_C5TMH6 Rod shape-determining protein MreD n=5 Tax=Neisseria RepID=C5TMH6_NEIFL Length = 181 Score = 89.2 bits (220), Expect = 5e-17, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 74/160 (46%) Query: 3 SYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVM 62 SYR+ ++ S ++ ++L MP+ + + P L+LLYW L P R +G F + Sbjct: 22 SYRAVPLHIMAASLIVMMILDFMPFSFDGFFWLPEMTALMLLYWTLHQPQRAGMGLAFAI 81 Query: 63 GAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAE 122 G I+D + +TLG+ L+ ++ Y + + + Q V+ L+ ++ A Sbjct: 82 GLIVDAATAATLGLHALSYVVMTYFILNRRRQIMLYGHIMQLAAVLAALLLNQAVLTVAR 141 Query: 123 FLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + + + F + V +LWP + LM V + + + Sbjct: 142 LFLNHQVITLQGFVAPFVGALLWPILSQLMLIVTRIYRSR 181 >UniRef50_Q3SM35 Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SM35_THIDA Length = 166 Score = 86.8 bits (214), Expect = 2e-16, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 1/155 (0%) Query: 2 ASYRSQGRWV-IWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 + + GRW I S +A+L++ +PW +V RP++VL+ LL+W+L P RV G F Sbjct: 3 VAAETSGRWRRILGSLTLAVLVEQLPWSGLAMVLRPDFVLVALLFWVLHQPQRVGFGIAF 62 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 +G I D G+ LG +A + YLV ++QA + + L V ++V Sbjct: 63 FLGLIADFQDGAALGQHGIAYVVGVYLVLYLRLRLLQFDPFRQAAQLFPVLLAVQLVVLL 122 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKV 155 +L +N + + LW L++R Sbjct: 123 GGWLAVNPPAGLAILMPVFGSTFLWYLSALVLRLW 157 >UniRef50_Q1LU39 Rod shape-determining protein MreD n=1 Tax=Baumannia cicadellinicola str. Hc (Homalodisca coagulata) RepID=Q1LU39_BAUCH Length = 158 Score = 84.1 bits (207), Expect = 2e-15, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 99/156 (63%), Gaps = 1/156 (0%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDN-LIVFRPNWVLLILLYWILALPHRVNVGTG 59 M + Q WVIWL F +++ + + + +F P+W+ L+L+YW++ +R++VG Sbjct: 1 MTRFYRQYNWVIWLFFFFIIIILPIIPCNKPINLFWPSWLNLLLIYWVMVRQNRIHVGIV 60 Query: 60 FVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVF 119 F++ I+DLI GS LG+ L +SII Y+V +K + FRN ++QQ ++++L S + IV Sbjct: 61 FLISIIVDLIRGSKLGIHPLLISIIIYIVFIKIKFFRNKNIYQQVIIIILASAIAKFIVN 120 Query: 120 WAEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKV 155 +L+++ S++ + SS+V+G+ WP + +MRK+ Sbjct: 121 ITNYLLLSNSWQTGILSSSIVDGIAWPLVLCIMRKI 156 >UniRef50_Q1QDJ0 Rod shape-determining protein MreD n=2 Tax=Psychrobacter RepID=Q1QDJ0_PSYCK Length = 161 Score = 83.4 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 73/147 (49%), Gaps = 1/147 (0%) Query: 11 VIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLIS 70 VI LSF+IA L + P ++ RP ++++L++W+L P V + + F +G I DL+ Sbjct: 16 VIVLSFIIASSLSVYPLSPSMATLRPMIMIMVLIFWLLFQPRYVGIFSAFAIGLIADLLM 75 Query: 71 GSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSF 130 + LG + + +A ++ + R L A ++ L L + W + + F Sbjct: 76 DTHLGQQAFSAVAVALMIKVTSIYIRQLNTI-SAWIIASLGLFIFQASLWMLQMFVQDVF 134 Query: 131 RPEVFWSSVVNGVLWPWIFLLMRKVRQ 157 + +S +++ + WP + L +RK + Sbjct: 135 VAQSTFSLLMSIISWPLVLLTLRKFVR 161 >UniRef50_A5WCI6 Putative uncharacterized protein n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WCI6_PSYWF Length = 162 Score = 83.4 bits (205), Expect = 3e-15, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 1/149 (0%) Query: 12 IWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISG 71 + SF+ A ++ I P + RP ++++L++W++ P V V T F +G I DL+ Sbjct: 15 VIASFVAASVVNIYPLSLDASKLRPMALIMVLIFWLIYKPRYVGVVTAFAIGIISDLLLD 74 Query: 72 STLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFR 131 + LG + A I+A+ + Q + + L A V +L+V + W + F Sbjct: 75 TRLGQQGFAAVIMAFSLRFVGQYIKQVNL-PVAWTVATGALIVFQLTLWIVQYLTQNIFY 133 Query: 132 PEVFWSSVVNGVLWPWIFLLMRKVRQQFA 160 +S +V+ + WP +F + + +++ Sbjct: 134 ASAIFSLLVSVISWPLVFFGLHRFINKYS 162 >UniRef50_A5IGA1 Rod shape determining protein MreD n=5 Tax=Legionella RepID=A5IGA1_LEGPC Length = 159 Score = 82.6 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 74/138 (53%) Query: 14 LSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGST 73 L FL+AL L I+P P+ + +FRP WVLL++LY LP + + + G +LD++ + Sbjct: 10 LGFLVALALSILPMPELISIFRPPWVLLLVLYIEYYLPGKFKLTALLIAGLLLDVLLSTV 69 Query: 74 LGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPE 133 +G A+ ++ ++ + K + + +L QQ ++ + I+ + + L+ Sbjct: 70 IGEHSFALLLVTWIASTKSRRVQFFSLIQQVCLIGFFCFLYQSIIIFIDALLGFNYNLIM 129 Query: 134 VFWSSVVNGVLWPWIFLL 151 S+++ ++WPWI +L Sbjct: 130 PVASAILGMIIWPWIRVL 147 >UniRef50_Q31F49 Rod shape-determining protein MreD n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31F49_THICR Length = 167 Score = 81.8 bits (201), Expect = 6e-15, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 74/153 (48%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 S +W++ S+ I++++ M I F P + LLILL+W + ++ ++ + F +G + Sbjct: 11 SDIKWLLIFSYFISVVIDSMMILSFNINFVPYFTLLILLFWSTQILNQTHLFSAFALGLL 70 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 D + LG L I +L+ F+ LWQQ+++V ++ + ++ V Sbjct: 71 FDASMNTPLGSHSLIFVTITFLMLRSRLRFKGYPLWQQSMIVGSYFIIFQAMSWFIFHPV 130 Query: 126 INVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQ 158 + + + ++ ++WP + +M ++ + Sbjct: 131 LVGNALLYYWIEPLLAILIWPVLTQVMHRLTHR 163 >UniRef50_C8PVZ5 Rod shape-determining protein MreD n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVZ5_9GAMM Length = 161 Score = 79.5 bits (195), Expect = 3e-14, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 78/156 (50%), Gaps = 1/156 (0%) Query: 2 ASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFV 61 + V+ +SF+IA +L + P + +FRP W++++L++W++ P + +G FV Sbjct: 7 KKTKQHLYIVMAISFIIASVLSVYPLSAEIALFRPMWMIMMLIFWLIFQPTLIGIGLAFV 66 Query: 62 MGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWA 121 +G DL++ S +G + L ++A+ + R L+ ++ L++ + Sbjct: 67 VGLFADLLTDSRIGQQALCAVLVAFFIKFVSGYLRQLSS-NLVWLLAGACLLIYQLGLIF 125 Query: 122 EFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQ 157 L F P++ ++ V+ ++WP + +M + + Sbjct: 126 LHLFTQGVFAPQLLYTVAVSTLIWPLLVAVMLRYTR 161 >UniRef50_A4T0H0 Rod shape-determining protein MreD n=2 Tax=Polynucleobacter necessarius RepID=A4T0H0_POLSQ Length = 174 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 76/156 (48%), Gaps = 4/156 (2%) Query: 5 RSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGA 64 R I+ S ALLL ++P + + P+W+++ +++W + V+V T F++G Sbjct: 11 RPVNPVFIYFSLFCALLLNLLPIGNY--GWVPDWLIICMVFWNIHQHRYVSVITAFILGL 68 Query: 65 ILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFL 124 ++D+ + LG+ + S++AY+ ++ L + QA+ ++ + L+V + + Sbjct: 69 MMDVHNSDLLGLHAFSYSLVAYVAISWHRRIVALTVLSQAVHLLPVFLLVALFPVLVHWA 128 Query: 125 VINVSFRPEVF--WSSVVNGVLWPWIFLLMRKVRQQ 158 + + + + + +LWP ++ +++ Sbjct: 129 LSGELYWWALTGAVQAFIEAMLWPLATRILLAPQRR 164 >UniRef50_A0L7I2 Rod shape-determining protein MreD n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L7I2_MAGSM Length = 171 Score = 73.0 bits (178), Expect = 3e-12, Method: Composition-based stats. Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 2/152 (1%) Query: 10 WVIWLSFLIALLLQIMPWP-DNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDL 68 W+ LS ++A+ +Q + P VFRP+ +L+ L YW L P R G+ F G +DL Sbjct: 11 WLPLLSLMLAVAVQEVALPYQAWSVFRPDLLLVALFYWRLYRPDRCGPGSAFGAGVAVDL 70 Query: 69 ISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINV 128 +SG +G+ L+ +I L+ R ++ LLSL+ +I LV Sbjct: 71 LSGGPMGINALSKILITLLIRRFGPRLRATDAIFLVPILALLSLLDQMIQLGLATLVQGW 130 Query: 129 SFRPEVFWSSVVN-GVLWPWIFLLMRKVRQQF 159 R + VV+ ++ P + + + + + Sbjct: 131 GVRWPLLLGRVVSTALVAPLVVGALIHIHRIW 162 >UniRef50_Q9RH81 Rod shape determining protein MreD (Fragment) n=1 Tax=Pseudomonas fluorescens RepID=Q9RH81_PSEFL Length = 95 Score = 64.9 bits (157), Expect = 8e-10, Method: Composition-based stats. Identities = 31/91 (34%), Positives = 51/91 (56%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 MA+ S+ W++WL+F I +LL + P P + + RP W+ L+L +W L LPH+V + T Sbjct: 1 MANTHSRNGWIVWLTFAIGMLLSVSPLPQFMEILRPLWLALLLAFWSLNLPHKVGMVTAM 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALK 91 +G D++ G+ LG L + + L Sbjct: 61 FLGLAEDVLYGTLLGQNALITKVYSPLSMTL 91 >UniRef50_Q1YU27 Rod shape-determining protein MreD n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YU27_9GAMM Length = 158 Score = 64.1 bits (155), Expect = 2e-09, Method: Composition-based stats. Identities = 32/147 (21%), Positives = 79/147 (53%) Query: 12 IWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISG 71 + L+ ++A++L +MP + IV++PN++LL ++ W++ P V + +G + D++ Sbjct: 10 VCLTLILAVVLSLMPLSGDWIVWKPNFLLLTVMAWVMRWPDGVGIFFAASVGLLADILLR 69 Query: 72 STLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFR 131 + G V+ ++ A+ +AL + + L++ Q+ L+V L+ +V + S Sbjct: 70 MSPGHSVIVFALCAFALALVSRWAKYLSMLQRTLLVALIISLVAMFEASLFIFYGRPSGI 129 Query: 132 PEVFWSSVVNGVLWPWIFLLMRKVRQQ 158 + +++ + WP+I L+ +++ + Sbjct: 130 EYLPMKILLSMLAWPFIDRLVARMQPR 156 >UniRef50_A5CW44 Rod shape-determining protein MreD n=3 Tax=Gammaproteobacteria RepID=A5CW44_VESOH Length = 156 Score = 61.0 bits (147), Expect = 1e-08, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 68/154 (44%), Gaps = 1/154 (0%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M R +++ ++F AL+L ++P L+ W+LL+ +YWI+ ++ Sbjct: 1 MNVQRRPYIFLMKITFF-ALILSVIPLNKLLLGASAFWLLLLYIYWIVYFSTKLKFFIAL 59 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 ++G ++D++ G LG LA+ + ++ Q F L Q + + + S + + Sbjct: 60 ILGTLVDILHGDILGQNALALIFSSLFISNIKQSFFLSNLSTQQVYIFISSSIYLVFFLL 119 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRK 154 L +F + + +WP + L+ K Sbjct: 120 IFVLTQGFIINYYLFLAPFTSAFIWPVVQFLLSK 153 >UniRef50_B0SG26 Cell shape-determining protein n=6 Tax=Leptospira RepID=B0SG26_LEPBA Length = 171 Score = 49.9 bits (118), Expect = 3e-05, Method: Composition-based stats. Identities = 25/154 (16%), Positives = 59/154 (38%), Gaps = 10/154 (6%) Query: 9 RWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDL 68 + I + L+A L + RP+++++ ++++ L + GF G + D Sbjct: 5 KVFIIIGLLLAHFLNGSNVFELGNAIRPDFMVIFVVFFALRKGPMYGLWLGFFGGLLTDT 64 Query: 69 ISGS----------TLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIV 118 G +G+ + +I+ Y+V + + ++ L+ V +I Sbjct: 65 ALGGEIGGDNLVYYKIGLHSFSYAIVGYIVGKGLRSSYTENYISITIYILGLTFVSRLIT 124 Query: 119 FWAEFLVINVSFRPEVFWSSVVNGVLWPWIFLLM 152 + + + + + S+ N L P +F L Sbjct: 125 YLLFLMFFHSNHSYSFLYVSLYNAFLGPALFFLF 158 >UniRef50_Q73N05 Rod shape-determining protein MreD n=1 Tax=Treponema denticola RepID=Q73N05_TREDE Length = 172 Score = 44.9 bits (105), Expect = 0.001, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 51/126 (40%) Query: 10 WVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLI 69 W F I LL + + P+ VLL ++Y ++ + GF+ G + D + Sbjct: 7 WTSLSVFFITLLQTAIFSHISFFTVLPDLVLLTVIYIAISNGSLTGLICGFIAGLLADFL 66 Query: 70 SGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVS 129 S + +G+ ++ YLV Y ++ + ++ L + +++F + L Sbjct: 67 SAAPIGLHSFIFTLTGYLVGKFYGIYNLNKVIFPCILGGLGFVFKVLLLFVLKILFGQNI 126 Query: 130 FRPEVF 135 +F Sbjct: 127 HTYNIF 132 >UniRef50_C8PRS7 Rod shape-determining protein MreD n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PRS7_9SPIO Length = 166 Score = 44.1 bits (103), Expect = 0.002, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 5/163 (3%) Query: 5 RSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGA 64 R W I +FL+ + + + P+ +L++++Y L V GF G Sbjct: 2 RKVVLWTIAAAFLLGIFETAILSHIRFLPALPDLILILVVYIALHNGTVAGVTAGFFSGL 61 Query: 65 ILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFL 124 I D +S + +G+ +++ +L L Y+ + + ++ + + + I+F L Sbjct: 62 IFDFLSLAPMGLHSFVFTVLGFLYGLLYRKYNVRRFFFPFILGLSATFLKAGILFILNIL 121 Query: 125 VIN-----VSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + + N V P +F+L+ F ++ Sbjct: 122 FGQSIQVYNLLALSFWIEAAGNAVCAPLLFMLLGLFPNAFEIK 164 >UniRef50_B1I4Q2 Putative uncharacterized protein n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I4Q2_DESAP Length = 164 Score = 43.7 bits (102), Expect = 0.002, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 50/106 (47%) Query: 35 RPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQL 94 +P+ VL++++Y+ + R GF+ G D +SG LG+ LA++ Y+V L + Sbjct: 30 KPDLVLVLVVYYAIFNGPREGAFLGFLGGLAHDFLSGYYLGLNALAVAASGYVVGLGHIR 89 Query: 95 FRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVV 140 + A + L +++V+ I + + E +W ++ Sbjct: 90 LFKENHFVVAGIAFLATILVEGIRYLLLLFLGVTILPGEAWWGLII 135 >UniRef50_A8TM61 Putative uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TM61_9PROT Length = 169 Score = 42.9 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 24/148 (16%), Positives = 63/148 (42%), Gaps = 1/148 (0%) Query: 12 IWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISG 71 I L+ L+A+L + P + + YW + P F++G + D+++ Sbjct: 19 IALTVLLAILSVVPIGVPGYATVVPAYTAMAAFYWAVFRPDLQPPFALFLVGVLQDILAA 78 Query: 72 STLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFR 131 + LG+ L++ ++ L + + F L +L+ + ++++ +++ Sbjct: 79 TPLGMTALSLMVVHGLALSQRRAFLGKPFALAWLGFLLIHGLSALLIWLLASMLVLQPIG 138 Query: 132 PEV-FWSSVVNGVLWPWIFLLMRKVRQQ 158 PE + +V L+P + + ++ + Sbjct: 139 PEPAVFQYLVTVTLFPLVAWIFVRMHRY 166 >UniRef50_A7HW07 Rod shape-determining protein MreD n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HW07_PARL1 Length = 177 Score = 42.5 bits (99), Expect = 0.005, Method: Composition-based stats. Identities = 23/114 (20%), Positives = 46/114 (40%), Gaps = 2/114 (1%) Query: 20 LLLQIMPWPDNL-IVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRV 78 +LL +P + P + L+ + YW + P F +G I DL+SG +G+ Sbjct: 32 VLLSFVPLGRIVGSPLTPAFPLMAIYYWAIVRPEMFPPLAVFTVGLIFDLLSGGAIGLWA 91 Query: 79 LAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRP 132 ++ Y V + ++ A + + L++ + W + + F P Sbjct: 92 FVY-VVTYAVVISQRMLVMNAPFSVFWIGFLVAAAFAGALAWGVVSISHGMFVP 144 >UniRef50_B2S393 Rod shape-determining protein n=2 Tax=Treponema pallidum RepID=B2S393_TREPS Length = 168 Score = 41.0 bits (95), Expect = 0.012, Method: Composition-based stats. Identities = 24/126 (19%), Positives = 51/126 (40%) Query: 10 WVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLI 69 W + SFL +++ + + + P+ VLL++L+ + + TGF+ G I D + Sbjct: 7 WSVGTSFLFSIVEMAVFVHVSYLSIMPDLVLLVVLFTSIHNGVVAGIWTGFIAGIIFDFL 66 Query: 70 SGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVS 129 S S G+ + I ++V + ++ A++ + +V + Sbjct: 67 SISPFGLHSFVFTTIGFMVGKVQGRYHIDRVFAPAVLAGFAMIFKVGLVLVLRGVFGPNI 126 Query: 130 FRPEVF 135 VF Sbjct: 127 QVYSVF 132 >UniRef50_Q0AWG6 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWG6_SYNWW Length = 167 Score = 41.0 bits (95), Expect = 0.013, Method: Composition-based stats. Identities = 21/94 (22%), Positives = 40/94 (42%) Query: 36 PNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLF 95 P+ VL+ ++++ L R GF+ G + DL G +GV L+ + AYLV Sbjct: 31 PDLVLVFVVFFALINGARGGTIYGFLCGLLEDLYLGRFIGVNALSKAFTAYLVGHFQDRV 90 Query: 96 RNLALWQQALVVMLLSLVVDIIVFWAEFLVINVS 129 + + V + + ++VF+ + Sbjct: 91 FKENILVALIAVFFSTFINSLLVFFLALFTHDTF 124 >UniRef50_UPI0000E87A9D hypothetical protein MB2181_01455 n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87A9D Length = 162 Score = 41.0 bits (95), Expect = 0.013, Method: Composition-based stats. Identities = 21/143 (14%), Positives = 57/143 (39%), Gaps = 1/143 (0%) Query: 16 FLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLG 75 FL+ LL + P P++++ + +L + + T F G I D++ G +G Sbjct: 19 FLLTLLFSQINIPFISSGSLPDYLVAWSVGVMLLNNKQYGILTIFFAGLIADILIGQIIG 78 Query: 76 VRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVF 135 I+ Y + Q + ++Q + ++ ++V ++ +F Sbjct: 79 QYAFTF-ILTYAILFFIQKMFAIQSYKQRTITGIILVIVALLTTNITSTTYQTNFHETSI 137 Query: 136 WSSVVNGVLWPWIFLLMRKVRQQ 158 ++ ++ ++ L+ ++ + Sbjct: 138 VLKLITTIITFLVYQLIIYIKLK 160 >UniRef50_B6ITQ9 Putative uncharacterized protein n=1 Tax=Rhodospirillum centenum SW RepID=B6ITQ9_RHOCS Length = 173 Score = 41.0 bits (95), Expect = 0.014, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 54/126 (42%), Gaps = 3/126 (2%) Query: 36 PNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLF 95 P +L+ ++YW + P + F++G + DL+ G+ LG+ L + AY + L + F Sbjct: 43 PPLMLMAVVYWAIHRPDLLRPTLVFLLGVLNDLLGGAPLGMTALVFVL-AYWLLLTQRRF 101 Query: 96 RNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRP--EVFWSSVVNGVLWPWIFLLMR 153 + + + + V WA + ++ + ++ ++P ++ Sbjct: 102 FLGNSFLLLWIGFTMVALGAAAVQWAVYSLMAAELLTFRAAGFQVMLATAVFPLAAWVLM 161 Query: 154 KVRQQF 159 ++ + F Sbjct: 162 RLHRAF 167 >UniRef50_A4J7K3 Putative uncharacterized protein n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J7K3_DESRM Length = 166 Score = 40.6 bits (94), Expect = 0.017, Method: Composition-based stats. Identities = 33/146 (22%), Positives = 66/146 (45%), Gaps = 6/146 (4%) Query: 11 VIWLSFLIALLLQIMPWPD-NLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLI 69 V +L I+LLLQ + + +P+ VL+ +++ R GF+ G D+ Sbjct: 5 VFFLLITISLLLQSTVFTFLQVAGIKPDLVLMFVVFNGFLRGSREGAFLGFLAGLAQDIF 64 Query: 70 SGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVI--- 126 +GS +G+ L + YLV L F ++ ++V ++ +V +I++ F + Sbjct: 65 TGSYIGLNALTKMLAGYLVGLAETRFYKESVIIVSMVTFVVGVVNQVILYLLLFYLNVEI 124 Query: 127 --NVSFRPEVFWSSVVNGVLWPWIFL 150 +F + S++ G+L P + Sbjct: 125 SPYYAFGQVIIPSAIYTGLLVPLSYW 150 >UniRef50_C8WGI8 Rod shape-determining protein MreD n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGI8_EGGLE Length = 175 Score = 40.2 bits (93), Expect = 0.021, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 61/135 (45%), Gaps = 2/135 (1%) Query: 7 QGRWVIWLSFLIALLLQIMPWPDNLIV-FRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 + VI + ++ALLLQI+ P+ + +PN++L +L +A P F +G + Sbjct: 5 REGIVIAVGAVVALLLQIVVAPNIALFSAQPNFLLAYVLVVAIARPLDAGSALPFALGLV 64 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIV-FWAEFL 124 DL+ +G I++++ + + + N L+ + ++ + +++ L Sbjct: 65 CDLLGSGPVGGYAFLFVIVSFIASRAFSVLDNDTLFMPVTIFVVATFAAEMLYGALLIGL 124 Query: 125 VINVSFRPEVFWSSV 139 ++ S + ++ Sbjct: 125 GLSASPVDAFLYRAL 139 >UniRef50_C1F7C9 Rod shape-determining protein MreD n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F7C9_ACIC5 Length = 172 Score = 40.2 bits (93), Expect = 0.022, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 4/126 (3%) Query: 37 NWVLLILLYWILALPHRVNVGT-GFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLF 95 + LL+ +Y+ + + + G +G + D+ + LGV +A +II Y A Sbjct: 46 DLPLLVTIYFAITWRNPIGGTLCGAAIGILQDVPTQHPLGVYGIAKAIIGYFAASIGIRI 105 Query: 96 RNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWS---SVVNGVLWPWIFLLM 152 +L + L++ +LV IV+ E +I+ + + +VVN V+ +F L Sbjct: 106 DTESLGTRLLLIPAFTLVHGGIVWLLETHLIDQPYAWIWWLEGLHAVVNAVIGVMLFSLF 165 Query: 153 RKVRQQ 158 + R++ Sbjct: 166 DRARRR 171 >UniRef50_B3T1Z2 Putative rod shape-determining protein MreD n=1 Tax=uncultured marine microorganism HF4000_133G03 RepID=B3T1Z2_9ZZZZ Length = 168 Score = 40.2 bits (93), Expect = 0.025, Method: Composition-based stats. Identities = 23/112 (20%), Positives = 51/112 (45%) Query: 41 LILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLAL 100 +++ YW+L P + G F+ G I D++ G +G+ L + IIA + A + +L Sbjct: 44 ILIYYWVLKQPQVLGYGFIFLSGIITDVVFGLPIGISALTLLIIASVAAYVRAVTVRPSL 103 Query: 101 WQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPWIFLLM 152 + + L+ + I F + F +S+ + +P+++++ Sbjct: 104 LYDWMSFIPALLIANFIYFIVLYFSNYSIDYLYFFKNSIFTFLFYPFLWVIF 155 >UniRef50_B3E5W6 Rod shape-determining protein MreD n=1 Tax=Geobacter lovleyi SZ RepID=B3E5W6_GEOLS Length = 162 Score = 39.9 bits (92), Expect = 0.032, Method: Composition-based stats. Identities = 21/132 (15%), Positives = 58/132 (43%), Gaps = 4/132 (3%) Query: 13 WLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGS 72 L + LL + L +++P+ +L+++++ L P ++ + +G + D +SG Sbjct: 9 ALVLGVVLLQTSVLPQYLLSLYKPDLLLILMVFLALRAPVSTSLPAAYGLGLLKDCLSGL 68 Query: 73 TLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRP 132 LG+ + ++ ++ Q AL+++L + L++++ Sbjct: 69 YLGLNAFSFLLVYLVLKTLSDRLY----VQNALLLVLTVSLSTFATMLINALLLSIFSEA 124 Query: 133 EVFWSSVVNGVL 144 +SS++ ++ Sbjct: 125 AGIFSSLMAALI 136 >UniRef50_A3UE63 Putative uncharacterized protein n=1 Tax=Oceanicaulis alexandrii HTCC2633 RepID=A3UE63_9RHOB Length = 168 Score = 39.5 bits (91), Expect = 0.043, Method: Composition-based stats. Identities = 31/148 (20%), Positives = 61/148 (41%), Gaps = 2/148 (1%) Query: 11 VIWLSFLIALLLQIMPW-PDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLI 69 + ++ LIAL+L +P + P + L+ L W + P ++ ++G DL+ Sbjct: 16 MFIVTMLIALILHALPSRLGSGPDLAPAFPLIALFIWSVRQPWFISPPVLLLVGVAQDLL 75 Query: 70 SGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVS 129 +G+ +GV L+ ++A+ V + + AL L + + + A I Sbjct: 76 AGAPMGVWALSF-LVAFSVLRLRETDGAGEVGPLALRFTLTACAAFGVAWGAGSFAIGAP 134 Query: 130 FRPEVFWSSVVNGVLWPWIFLLMRKVRQ 157 P + V +L IF + R+ Sbjct: 135 VAPGPLITEAVLTILLFPIFAWLFARRK 162 >UniRef50_C1QD51 Rod shape-determining protein MreD n=2 Tax=Brachyspira RepID=C1QD51_9SPIR Length = 180 Score = 39.1 bits (90), Expect = 0.056, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 4/99 (4%) Query: 35 RPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQL 94 +P+ +L+ L++ + GF++G + D++S T G + I + V Sbjct: 33 KPDLLLIFLVFISFRYGSFDGIIYGFIIGLLQDIVSSGTFGSYAIIFLNIGFFVGFFNTR 92 Query: 95 FRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPE 133 +Q + ++LV +I A FLV ++ Sbjct: 93 I----FIKQIAAGIFVTLVGYLIKIIALFLVTSIYSDLS 127 >UniRef50_Q0AN30 Putative uncharacterized protein n=1 Tax=Maricaulis maris MCS10 RepID=Q0AN30_MARMM Length = 173 Score = 38.7 bits (89), Expect = 0.061, Method: Composition-based stats. Identities = 19/74 (25%), Positives = 34/74 (45%), Gaps = 1/74 (1%) Query: 13 WLSFLIALLLQIMPW-PDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISG 71 S L+AL++Q P + + P W L+ + W P + F +G DL++G Sbjct: 18 IASVLVALIVQASPTRLVDGLTIMPTWTLMAIFLWSGVRPQFMPPIAVFAIGLTQDLLTG 77 Query: 72 STLGVRVLAMSIIA 85 + +GV L+ + Sbjct: 78 APMGVWALSYLVAI 91 >UniRef50_B8FVF2 Rod shape-determining protein MreD n=2 Tax=Desulfitobacterium hafniense RepID=B8FVF2_DESHD Length = 169 Score = 38.7 bits (89), Expect = 0.061, Method: Composition-based stats. Identities = 27/117 (23%), Positives = 48/117 (41%), Gaps = 6/117 (5%) Query: 16 FLIALLLQIMPWPDNLIVFR------PNWVLLILLYWILALPHRVNVGTGFVMGAILDLI 69 +I +LL + P + F P+ VLL +Y L G G + D Sbjct: 6 LIIVMLLFSLILPGTVFYFWSWGGIKPDLVLLFTIYMALHHRTLPGALWGLGAGMLADFY 65 Query: 70 SGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVI 126 G G+ L ++++A L Q + + AL+V L++ V + ++ + LV Sbjct: 66 LGRHFGMYALTLTVVALLSDWLSQRWYRENYFLIALLVFLVTFVGEGLIAFLNILVG 122 >UniRef50_B7GIQ3 Cell shape-determining protein n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GIQ3_ANOFW Length = 174 Score = 38.3 bits (88), Expect = 0.098, Method: Composition-based stats. Identities = 23/129 (17%), Positives = 59/129 (45%), Gaps = 2/129 (1%) Query: 11 VIWLSFLIALLLQIMPWP-DNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLI 69 V + L ++++Q++ P ++ + P +L+ +++ + + + GF+ G + D+ Sbjct: 10 VTVMFLLESIIVQLLSQPLFDVYLLVPRMLLVFIVFITIFIGQTEGMTYGFIFGLLYDVA 69 Query: 70 SGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVS 129 LG A S+IAYL+A +F + W + ++ V+ + + ++ + Sbjct: 70 YTELLGAYAFAFSLIAYLIAKAMNVF-HKNAWTASFFAIVAIACVEWYAYAIQLVIGGTT 128 Query: 130 FRPEVFWSS 138 + F + Sbjct: 129 MSVQTFLQA 137 >UniRef50_D2BCD8 Putative uncharacterized protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BCD8_STRRD Length = 176 Score = 38.3 bits (88), Expect = 0.100, Method: Composition-based stats. Identities = 15/70 (21%), Positives = 29/70 (41%), Gaps = 5/70 (7%) Query: 21 LLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLI--SGSTLGVRV 78 ++ +P P P+ VLL ++ + L GF G D++ + LG Sbjct: 22 VVNRLPLPGEGA---PDLVLLTVVGYALVRGANAGAVMGFCAGLASDVLPPAAHVLGQHA 78 Query: 79 LAMSIIAYLV 88 L + +I ++ Sbjct: 79 LVLCLIGFMA 88 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_A7C6B4 Rod shape-determining protein MreD n=1 Tax=Beggi... 130 1e-29 UniRef50_C4L8L5 Rod shape-determining protein MreD n=1 Tax=Tolum... 128 5e-29 UniRef50_Q2BKP8 Rod shape-determining protein MreD n=2 Tax=Gamma... 127 9e-29 UniRef50_A6VWN4 Rod shape-determining protein MreD n=2 Tax=Marin... 126 2e-28 UniRef50_C7R9G4 Rod shape-determining protein MreD n=1 Tax=Kangi... 125 4e-28 UniRef50_C6MDC7 Rod shape-determining protein MreD n=1 Tax=Nitro... 124 7e-28 UniRef50_Q47VG6 Rod shape-determining protein MreD n=4 Tax=Alter... 124 1e-27 UniRef50_P0ABH6 Rod shape-determining protein mreD n=132 Tax=Ent... 122 4e-27 UniRef50_Q15ZH1 Rod shape-determining protein MreD n=4 Tax=Alter... 122 4e-27 UniRef50_C4K6Y8 Rod shape-determining protein n=1 Tax=Candidatus... 122 4e-27 UniRef50_C5SBR5 Rod shape-determining protein MreD n=1 Tax=Alloc... 122 4e-27 UniRef50_Q2YC95 Rod shape-determining protein MreD n=1 Tax=Nitro... 122 5e-27 UniRef50_Q0AFP8 Rod shape-determining protein MreD n=2 Tax=Nitro... 122 5e-27 UniRef50_A0KFA9 Rod shape-determining protein MreD n=3 Tax=Gamma... 121 7e-27 UniRef50_C6P2H4 Rod shape-determining protein MreD n=1 Tax=Sider... 121 1e-26 UniRef50_Q7NPY3 Rod shape-determining protein MreD n=2 Tax=Chrom... 120 1e-26 UniRef50_Q5QWE3 Rod shape-determining protein n=2 Tax=Idiomarina... 119 2e-26 UniRef50_B2SMY7 Rod shape-determining protein MreD n=20 Tax=Xant... 117 1e-25 UniRef50_B7V018 Rod shape-determining protein MreD n=21 Tax=Pseu... 117 2e-25 UniRef50_Q07WQ1 Rod shape-determining protein MreD n=21 Tax=Shew... 116 4e-25 UniRef50_C5BSY4 Rod shape-determining protein MreD n=1 Tax=Tered... 115 4e-25 UniRef50_Q0KFF4 Rod shape-determining protein MreD n=12 Tax=Burk... 115 5e-25 UniRef50_B5JU59 Rod shape-determining protein MreD n=1 Tax=gamma... 114 9e-25 UniRef50_A4BLX4 Rod shape-determining protein MreD n=1 Tax=Nitro... 114 1e-24 UniRef50_C0N753 Rod shape-determining protein MreD n=1 Tax=Methy... 114 1e-24 UniRef50_Q60CK4 Rod shape-determining protein MreD n=1 Tax=Methy... 114 1e-24 UniRef50_A4BGL4 Rod shape-determining protein MreD n=1 Tax=Reine... 113 2e-24 UniRef50_C4GIM3 Putative uncharacterized protein n=1 Tax=Kingell... 112 3e-24 UniRef50_A4A5B4 Rod shape-determining protein MreD n=1 Tax=Congr... 112 3e-24 UniRef50_A0Z7H0 Rod shape-determining protein n=1 Tax=marine gam... 112 3e-24 UniRef50_B8GL91 Rod shape-determining protein MreD n=2 Tax=Thioa... 112 3e-24 UniRef50_C7RML3 Rod shape-determining protein MreD n=3 Tax=Betap... 112 3e-24 UniRef50_B7RTI7 Rod shape-determining protein MreD n=2 Tax=uncla... 111 7e-24 UniRef50_A1WVS1 Rod shape-determining protein MreD n=2 Tax=Ectot... 111 9e-24 UniRef50_Q1QVB9 Rod shape-determining protein MreD n=1 Tax=Chrom... 111 1e-23 UniRef50_A9N8Z0 Rod shape-determining protein MreD n=7 Tax=Coxie... 110 2e-23 UniRef50_C0DXR0 Putative uncharacterized protein n=1 Tax=Eikenel... 109 3e-23 UniRef50_B8KR95 Rod shape-determining protein MreD n=1 Tax=gamma... 109 3e-23 UniRef50_B3PC04 Putative rod shape-determining protein MreD n=1 ... 109 4e-23 UniRef50_A1U482 Rod shape-determining protein MreD n=3 Tax=Marin... 109 5e-23 UniRef50_Q21FT2 Rod shape-determining protein MreD n=1 Tax=Sacch... 108 6e-23 UniRef50_A9I0I9 Rod shape-determining protein MreD n=5 Tax=Borde... 107 9e-23 UniRef50_C5V1V9 Rod shape-determining protein MreD n=1 Tax=Galli... 107 9e-23 UniRef50_Q21RI3 Rod shape-determining protein MreD n=66 Tax=Burk... 106 2e-22 UniRef50_C1D5N3 MreD n=1 Tax=Laribacter hongkongensis HLHK9 RepI... 106 3e-22 UniRef50_Q1GYC9 Rod shape-determining protein MreD n=3 Tax=Methy... 106 4e-22 UniRef50_C7I0H6 Rod shape-determining protein MreD n=4 Tax=Burkh... 105 6e-22 UniRef50_Q0VS68 Rod shape-determining protein MreD n=2 Tax=Alcan... 104 8e-22 UniRef50_A1K1T9 Rod shape-determining protein n=4 Tax=Rhodocycla... 104 1e-21 UniRef50_Q1ZG63 Hypothetical rod shape-determining protein MreD ... 104 1e-21 UniRef50_B5F9L8 Rod shape-determining protein MreD n=89 Tax=Gamm... 104 2e-21 UniRef50_Q1MYL6 Rod shape-determining protein MreD n=1 Tax=Berma... 102 5e-21 UniRef50_Q7VRC2 Rod shape-determining protein MreD n=2 Tax=Candi... 100 2e-20 UniRef50_C5TMH6 Rod shape-determining protein MreD n=5 Tax=Neiss... 95 8e-19 UniRef50_A4T0H0 Rod shape-determining protein MreD n=2 Tax=Polyn... 93 3e-18 UniRef50_UPI00016994A6 Rod shape-determining protein MreD n=1 Ta... 91 9e-18 UniRef50_Q2SBH0 Cell shape-determining protein n=1 Tax=Hahella c... 91 1e-17 UniRef50_Q8D1V7 MreD protein n=1 Tax=Wigglesworthia glossinidia ... 91 2e-17 UniRef50_A8PNB8 Rod shape-determining protein MreD n=1 Tax=Ricke... 90 3e-17 UniRef50_B0VS17 Rod shape-determining protein n=17 Tax=Acinetoba... 90 3e-17 UniRef50_Q3SM35 Putative uncharacterized protein n=1 Tax=Thiobac... 89 3e-17 UniRef50_A1STZ6 Rod shape-determining protein MreD n=1 Tax=Psych... 89 6e-17 UniRef50_D0L063 Rod shape-determining protein MreD n=1 Tax=Halot... 88 1e-16 UniRef50_P44476 Rod shape-determining protein mreD n=32 Tax=Past... 87 2e-16 UniRef50_Q1YU27 Rod shape-determining protein MreD n=1 Tax=gamma... 86 3e-16 UniRef50_B5EMQ8 Rod shape-determining protein MreD n=3 Tax=Acidi... 86 4e-16 UniRef50_Q31F49 Rod shape-determining protein MreD n=1 Tax=Thiom... 84 1e-15 UniRef50_A5WCI6 Putative uncharacterized protein n=1 Tax=Psychro... 83 3e-15 UniRef50_A5IGA1 Rod shape determining protein MreD n=5 Tax=Legio... 83 4e-15 UniRef50_C8PVZ5 Rod shape-determining protein MreD n=1 Tax=Enhyd... 81 8e-15 UniRef50_Q1QDJ0 Rod shape-determining protein MreD n=2 Tax=Psych... 81 1e-14 UniRef50_A0L7I2 Rod shape-determining protein MreD n=1 Tax=Magne... 80 2e-14 UniRef50_Q1LU39 Rod shape-determining protein MreD n=1 Tax=Bauma... 77 2e-13 UniRef50_A5CW44 Rod shape-determining protein MreD n=3 Tax=Gamma... 77 2e-13 UniRef50_B0SG26 Cell shape-determining protein n=6 Tax=Leptospir... 74 2e-12 UniRef50_C8PRS7 Rod shape-determining protein MreD n=1 Tax=Trepo... 66 6e-10 UniRef50_Q73N05 Rod shape-determining protein MreD n=1 Tax=Trepo... 64 2e-09 UniRef50_Q9RH81 Rod shape determining protein MreD (Fragment) n=... 63 2e-09 Sequences not found previously or not previously below threshold: UniRef50_B2S393 Rod shape-determining protein n=2 Tax=Treponema ... 52 7e-06 UniRef50_B1I4Q2 Putative uncharacterized protein n=1 Tax=Candida... 50 2e-05 UniRef50_Q0AWG6 Putative uncharacterized protein n=1 Tax=Syntrop... 48 9e-05 UniRef50_C1F7C9 Rod shape-determining protein MreD n=1 Tax=Acido... 46 5e-04 UniRef50_A4J7K3 Putative uncharacterized protein n=1 Tax=Desulfo... 45 8e-04 UniRef50_D1AAV7 Rod shape-determining protein MreD n=1 Tax=Therm... 43 0.003 UniRef50_UPI0000E87A9D hypothetical protein MB2181_01455 n=1 Tax... 43 0.003 UniRef50_B7ANR5 Putative uncharacterized protein n=1 Tax=Bactero... 43 0.003 UniRef50_B6ITQ9 Putative uncharacterized protein n=1 Tax=Rhodosp... 43 0.004 UniRef50_B8FVF2 Rod shape-determining protein MreD n=2 Tax=Desul... 43 0.004 UniRef50_A7HW07 Rod shape-determining protein MreD n=1 Tax=Parvi... 42 0.006 UniRef50_Q1IRN5 Putative uncharacterized protein n=1 Tax=Candida... 42 0.006 UniRef50_C1QD51 Rod shape-determining protein MreD n=2 Tax=Brach... 42 0.007 UniRef50_C0EWW6 Putative uncharacterized protein n=1 Tax=Eubacte... 42 0.007 UniRef50_D2BCD8 Putative uncharacterized protein n=1 Tax=Strepto... 42 0.007 UniRef50_B3T1Z2 Putative rod shape-determining protein MreD n=1 ... 42 0.007 UniRef50_A8TM61 Putative uncharacterized protein n=1 Tax=alpha p... 42 0.009 UniRef50_A8MHM1 Putative uncharacterized protein n=1 Tax=Alkalip... 41 0.013 UniRef50_B4V3T9 Rod shape-determining protein n=18 Tax=Streptomy... 41 0.014 UniRef50_B3E5W6 Rod shape-determining protein MreD n=1 Tax=Geoba... 40 0.026 UniRef50_C8WAG3 Rod shape-determining protein MreD n=1 Tax=Atopo... 40 0.030 UniRef50_A5D430 Cell shape-determining protein n=1 Tax=Pelotomac... 40 0.034 UniRef50_A4U0U0 Cell shape-determining protein n=3 Tax=Magnetosp... 40 0.035 UniRef50_C0CHV5 Putative uncharacterized protein n=2 Tax=Clostri... 40 0.036 UniRef50_Q01ZY2 Putative uncharacterized protein n=1 Tax=Candida... 39 0.039 UniRef50_D1BNE8 Rod shape-determining protein MreD n=3 Tax=Veill... 39 0.040 UniRef50_A6TQI1 Putative uncharacterized protein n=1 Tax=Alkalip... 39 0.042 UniRef50_C8WXL3 Rod shape-determining protein MreD n=2 Tax=Alicy... 39 0.044 UniRef50_C9R8K4 Rod shape-determining protein MreD n=1 Tax=Ammon... 39 0.050 UniRef50_C4Z086 Putative uncharacterized protein n=1 Tax=Eubacte... 39 0.050 UniRef50_A3JW84 Sensor protein n=2 Tax=Rhodobacterales bacterium... 39 0.052 UniRef50_C7LYA8 Rod shape-determining protein MreD n=1 Tax=Acidi... 39 0.053 UniRef50_C8WGI8 Rod shape-determining protein MreD n=1 Tax=Egger... 39 0.058 UniRef50_A5Z699 Putative uncharacterized protein n=1 Tax=Eubacte... 39 0.064 UniRef50_Q0AN30 Putative uncharacterized protein n=1 Tax=Maricau... 39 0.064 UniRef50_A1HP02 Rod shape-determining protein MreD n=1 Tax=Therm... 39 0.070 UniRef50_B7GIQ3 Cell shape-determining protein n=1 Tax=Anoxybaci... 39 0.071 UniRef50_UPI0001C15A7A conserved hypothetical protein n=2 Tax=No... 39 0.075 UniRef50_C1XP36 Rod shape-determining protein MreD n=2 Tax=Meiot... 39 0.079 UniRef50_C9LXR8 Rod shape-determining protein MreD n=1 Tax=Selen... 38 0.084 UniRef50_C5RGQ5 Rod shape-determining protein MreD n=1 Tax=Clost... 38 0.096 >UniRef50_A7C6B4 Rod shape-determining protein MreD n=1 Tax=Beggiatoa sp. PS RepID=A7C6B4_9GAMM Length = 163 Score = 130 bits (328), Expect = 1e-29, Method: Composition-based stats. Identities = 54/162 (33%), Positives = 93/162 (57%), Gaps = 1/162 (0%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M+S R G WVI LSF+++ +L I+P P +++RP+WV L+L+YW +A+P RV V TG+ Sbjct: 1 MSSERHHGGWVIILSFIVSFMLAIIPLPAWAVLWRPDWVALVLIYWCIAVPQRVGVATGW 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 +G I D++ + LG L++ I Y+ ++ R LWQQA+ V L + I Sbjct: 61 FVGVIYDVLKDTLLGQNALSLCFIGYVSVKWHRQVRLFPLWQQAIGVFGLLSISHWIEAL 120 Query: 121 A-EFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 + ++ ++ +LWPW+F+++R +R+ + V Sbjct: 121 IYKNMLGYSLLTGSFISQVFISMILWPWVFVILRDMRRTYRV 162 >UniRef50_C4L8L5 Rod shape-determining protein MreD n=1 Tax=Tolumonas auensis DSM 9187 RepID=C4L8L5_TOLAT Length = 163 Score = 128 bits (323), Expect = 5e-29, Method: Composition-based stats. Identities = 60/156 (38%), Positives = 110/156 (70%) Query: 7 QGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAIL 66 G+ I+L+ ++A++L ++P P + +FRP+WV L++LYW++ALPH +NV + +++G I+ Sbjct: 8 HGKGSIYLTLIVAIILTMVPLPVAIDMFRPDWVALVVLYWVIALPHHLNVVSAWIVGLIM 67 Query: 67 DLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVI 126 D++ GSTLG+ L+M++I+ +VA +YQ RN ++WQQALV+ L V +++FW E L Sbjct: 68 DILLGSTLGIHALSMAVISCVVAAQYQKIRNFSVWQQALVMGSLIFVGQLLIFWVEHLFA 127 Query: 127 NVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + W+S+ + +LWP ++L +R +R++F ++ Sbjct: 128 SPRLNTRFVWASLSSTLLWPSVYLFLRYIRRRFNIR 163 >UniRef50_Q2BKP8 Rod shape-determining protein MreD n=2 Tax=Gammaproteobacteria RepID=Q2BKP8_9GAMM Length = 166 Score = 127 bits (321), Expect = 9e-29, Method: Composition-based stats. Identities = 59/161 (36%), Positives = 98/161 (60%) Query: 2 ASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFV 61 + + G ++I +FLI L+L +P P + RP WV +IL+YW++ALPHRV +G F Sbjct: 6 PAAQGGGGFIILGTFLIGLMLSQIPLPYFIEWARPEWVAMILIYWVMALPHRVGMGMAFF 65 Query: 62 MGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWA 121 +G +LD+I GS LG+ L+++ IA+L L +Q R L QQA++VM+L + ++ W Sbjct: 66 LGLLLDVIKGSVLGLNALSLTTIAFLTLLLHQRLRMFPLIQQAMMVMVLVGINQLLFHWM 125 Query: 122 EFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + +V+G+LWPW+F+++R VR+ F ++ Sbjct: 126 QAFTGFTGDSLIFLLPCLVSGILWPWLFVILRGVRRFFRIR 166 >UniRef50_A6VWN4 Rod shape-determining protein MreD n=2 Tax=Marinomonas RepID=A6VWN4_MARMS Length = 157 Score = 126 bits (318), Expect = 2e-28, Method: Composition-based stats. Identities = 57/157 (36%), Positives = 96/157 (61%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 + +V ++ L AL+L+ MP+P+ L+ FRP W LL++LYW++ALP RV VG + +G + Sbjct: 1 MKPIFVFCITLLTALMLEAMPFPEELVWFRPEWALLVILYWVIALPFRVGVGLAWFLGLM 60 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 +DL+ G +G L IIAY A+ Y+ R WQQ + LL + ++ FW + + Sbjct: 61 VDLLQGGIIGQHSLTYVIIAYTCAVFYKRLRMYHRWQQGFFICLLVSINQLLDFWIDHYL 120 Query: 126 INVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + +F +V+ G+LWPW F+++R VR+ +A++ Sbjct: 121 GHAEPTLMIFMPAVITGLLWPWSFIILRSVRRIYAIR 157 >UniRef50_C7R9G4 Rod shape-determining protein MreD n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7R9G4_KANKD Length = 165 Score = 125 bits (315), Expect = 4e-28, Method: Composition-based stats. Identities = 58/161 (36%), Positives = 97/161 (60%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M + G WVI LS +I ++L I P P+ FRP++ LI YW++ALPHR+ + F Sbjct: 4 MKNEVKHGTWVIILSLIIGMILDIFPLPETWQPFRPSFTFLIFSYWVIALPHRIGLLWAF 63 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 + G LD + G+TLG+ +++++ +++ L +Q R LW+QAL ++ LS++ IV W Sbjct: 64 ITGLALDALLGTTLGLHCFSLAVLTFILQLNHQRLRLFPLWKQALTLIFLSVIYFAIVLW 123 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 L + +++ NG+LWPW+F+L+R +R+ F V Sbjct: 124 LARLTGKPESDSWYWIATLTNGLLWPWLFVLLRDIRRYFHV 164 >UniRef50_C6MDC7 Rod shape-determining protein MreD n=1 Tax=Nitrosomonas sp. AL212 RepID=C6MDC7_9PROT Length = 191 Score = 124 bits (313), Expect = 7e-28, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 73/149 (48%) Query: 4 YRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMG 63 Y G W I S +I L+L +P +L++ RP++V L + YW + P+++ + F MG Sbjct: 30 YVPAGNWFIATSLIIGLILNFLPLQGDLLISRPDFVALAITYWNVNHPYKLGMSMAFGMG 89 Query: 64 AILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEF 123 ++D+ + LG LA S+I YL + + R +L +QA + L++ I++ Sbjct: 90 LMVDVGNAGILGQHALAYSVIFYLTLIFGRRLRLFSLLKQAPQIGFFLLIMQIVIILIAL 149 Query: 124 LVINVSFRPEVFWSSVVNGVLWPWIFLLM 152 + F ++V +LW LM Sbjct: 150 SNGSALPGWGYFLATVTGTLLWAPASFLM 178 >UniRef50_Q47VG6 Rod shape-determining protein MreD n=4 Tax=Alteromonadales RepID=Q47VG6_COLP3 Length = 159 Score = 124 bits (312), Expect = 1e-27, Method: Composition-based stats. Identities = 68/157 (43%), Positives = 109/157 (69%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 S ++I+L+ LIAL+ I P P ++ FRP+WVL++L+YW LALP+++N+ T +VMG I Sbjct: 3 SNNGFIIFLTLLIALMASITPMPLSVDAFRPDWVLIVLVYWCLALPNKINIFTAWVMGFI 62 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 LD++ GS LGV AM++ Y+V + +Q RN ++WQQAL++ +LS ++VFW + + Sbjct: 63 LDVLLGSVLGVHACAMALSVYIVVVNFQKIRNFSVWQQALIIGVLSAQYHLVVFWLQRFL 122 Query: 126 INVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 +V F P + + VLWPW+FLL+R+VR+ F ++ Sbjct: 123 SDVVFLPNYLYPVITTIVLWPWVFLLLRRVRRHFRIE 159 >UniRef50_P0ABH6 Rod shape-determining protein mreD n=132 Tax=Enterobacteriaceae RepID=MRED_ECO57 Length = 162 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 162/162 (100%), Positives = 162/162 (100%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF Sbjct: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW Sbjct: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ Sbjct: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 >UniRef50_Q15ZH1 Rod shape-determining protein MreD n=4 Tax=Alteromonadales RepID=Q15ZH1_PSEA6 Length = 158 Score = 122 bits (307), Expect = 4e-27, Method: Composition-based stats. Identities = 67/152 (44%), Positives = 105/152 (69%) Query: 11 VIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLIS 70 I LS ++AL+LQIMP P + +RP+WV L+L YW LALP RVNVG F++G +LD++ Sbjct: 7 TIGLSIIVALVLQIMPMPAIVEQYRPDWVFLVLGYWALALPERVNVGVAFIVGLVLDILL 66 Query: 71 GSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSF 130 G+++GV AMS+ +++A YQ RN ++WQQA+V+ +L + +++VFW L+ ++ F Sbjct: 67 GTSIGVHSFAMSLSVFVLAANYQRLRNYSVWQQAVVIGILCALYNLVVFWLMHLLTDIYF 126 Query: 131 RPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 W + + V+WPWIF L+R+VR+QF + Sbjct: 127 MLTYMWPVITSMVIWPWIFWLLRRVRRQFRLS 158 >UniRef50_C4K6Y8 Rod shape-determining protein n=1 Tax=Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum) RepID=C4K6Y8_HAMD5 Length = 162 Score = 122 bits (306), Expect = 4e-27, Method: Composition-based stats. Identities = 97/162 (59%), Positives = 136/162 (83%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M+ Y+S+GRWVI+LSFLI ++LQIMPWP + +F+P+W+LLI +YW++ALPHRVN+GTGF Sbjct: 1 MSYYKSRGRWVIYLSFLIGIILQIMPWPQQIDMFQPSWLLLIFIYWVMALPHRVNLGTGF 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 ++G I DL+ GSTLG+ L MS+IAYLV +K+Q FRN+ALWQQ L V+LLS+++ I VF Sbjct: 61 ILGLITDLLLGSTLGIHSLGMSMIAYLVTIKFQTFRNMALWQQTLFVILLSIIMTITVFL 120 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 EFL+I+VSF +F ++++NG++WPW+FLLMRK R++F VQ Sbjct: 121 TEFLIIHVSFNTGIFSNALINGIVWPWLFLLMRKTRRKFLVQ 162 >UniRef50_C5SBR5 Rod shape-determining protein MreD n=1 Tax=Allochromatium vinosum DSM 180 RepID=C5SBR5_CHRVI Length = 172 Score = 122 bits (306), Expect = 4e-27, Method: Composition-based stats. Identities = 49/160 (30%), Positives = 79/160 (49%) Query: 2 ASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFV 61 + Q W I LS +A+ L I+P D +RP W +L +L+W A P RV + TGFV Sbjct: 12 SYKPRQPFWPIALSLTLAMYLTILPLSDWPWDYRPPWTVLAILFWCFATPRRVGIFTGFV 71 Query: 62 MGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWA 121 +G +LD+++G+ LG L++S+ AYL + R WQQA V L+ L ++ W Sbjct: 72 VGLMLDVLTGALLGQHALSLSVTAYLALVLRPRIRIFPPWQQAFFVALILLTERLLTLWI 131 Query: 122 EFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 + S++V WP + L+ ++ + Sbjct: 132 IGATGQPMPALTYWISALVGLAFWPIMAWLLVPFERRLGL 171 >UniRef50_Q2YC95 Rod shape-determining protein MreD n=1 Tax=Nitrosospira multiformis ATCC 25196 RepID=Q2YC95_NITMU Length = 173 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 44/155 (28%), Positives = 78/155 (50%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 W I LS ++ALLL ++P +P++V L++LYW L P RV +G F MG + Sbjct: 14 PAKSWFIMLSLIVALLLNLIPVTGTARTLQPDFVALVMLYWYLNEPQRVGIGMAFWMGLL 73 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 +DL + ST G L S++A++ + + ++QA + L+ L I+ A Sbjct: 74 MDLSNASTFGQHALGYSVMAFMALVFNRRMGIFEGYKQAPQIGLVLLSGQIVTLLAGLFA 133 Query: 126 INVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFA 160 + F S+V +LWP + ++R ++ ++ Sbjct: 134 GSPFPGWNFFLGSIVGMLLWPLLSAILRVPQKPWS 168 >UniRef50_Q0AFP8 Rod shape-determining protein MreD n=2 Tax=Nitrosomonas RepID=Q0AFP8_NITEC Length = 183 Score = 122 bits (306), Expect = 5e-27, Method: Composition-based stats. Identities = 41/153 (26%), Positives = 77/153 (50%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 + +I++S + A+L+ +MP+ ++V RP++V L LLYW + P + + F+ G Sbjct: 24 PARKSLIYISLITAVLINLMPFDKVILVLRPDFVALTLLYWNIYQPQQAGMSIAFISGLF 83 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 +D+I S +G +A +I + + Y+ R +QQ V+ + L +VF L Sbjct: 84 MDVIDVSIMGQHAIAYCLITFFALILYRRLRLFNAFQQIPAVLWILLSGQGVVFLTGILA 143 Query: 126 INVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQ 158 + +F +SV + WP + L+ R+Q Sbjct: 144 GSYIPEWYIFLASVTGALCWPLLVFLLGIFRKQ 176 >UniRef50_A0KFA9 Rod shape-determining protein MreD n=3 Tax=Gammaproteobacteria RepID=A0KFA9_AERHH Length = 161 Score = 121 bits (305), Expect = 7e-27, Method: Composition-based stats. Identities = 79/159 (49%), Positives = 112/159 (70%) Query: 4 YRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMG 63 + GR IW+S L+AL L I+P P L FRP+W+ ++L+YW LALPHR NVGT +V G Sbjct: 3 QPASGRIWIWISILLALSLSILPLPFQLEPFRPDWLAMVLIYWALALPHRTNVGTAWVAG 62 Query: 64 AILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEF 123 +LD++ GSTLGVR +AM+I YL A ++Q RN +LWQQAL++ LSLV + +FWAE Sbjct: 63 LLLDVLLGSTLGVRAMAMAITTYLAAFQFQKIRNFSLWQQALIIGCLSLVGKVTIFWAEH 122 Query: 124 LVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 L S FWS++ ++WPW+FL++RKVR++F ++ Sbjct: 123 LFSRASLNFAYFWSTLSTMLIWPWVFLVLRKVRRRFNIK 161 >UniRef50_C6P2H4 Rod shape-determining protein MreD n=1 Tax=Sideroxydans lithotrophicus ES-1 RepID=C6P2H4_9PROT Length = 172 Score = 121 bits (303), Expect = 1e-26, Method: Composition-based stats. Identities = 42/152 (27%), Positives = 73/152 (48%), Gaps = 1/152 (0%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 I S +A++L +PW + RP++V L+LLYW PHRV +G +V+G Sbjct: 14 PASTSFIIFSLFVAVMLNWLPWHGWALALRPDFVALVLLYWCTHKPHRVGIGIAWVVGIF 73 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 D+ S G LA +++A+ + ++ + L QQA+ V + L+ Sbjct: 74 SDVADASLFGQHALAYTVLAFGGIVLHRRVQMFDLRQQAMHVFPMLLLSYAAYAAV-HWQ 132 Query: 126 INVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQ 157 + E F S V+ +LW + LL++ +R+ Sbjct: 133 VRGYVAWEYFLGSGVSALLWIPMTLLLQALRR 164 >UniRef50_Q7NPY3 Rod shape-determining protein MreD n=2 Tax=Chromobacterium group RepID=Q7NPY3_CHRVO Length = 167 Score = 120 bits (302), Expect = 1e-26, Method: Composition-based stats. Identities = 47/154 (30%), Positives = 80/154 (51%) Query: 5 RSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGA 64 + R I +F+IA+L++++P P + P+++ L++LYW++ P RVN+G F+MG Sbjct: 11 KPVKRRFILTTFVIAVLIELVPLPHGSTRWLPDFIGLLILYWVINQPRRVNIGIAFLMGI 70 Query: 65 ILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFL 124 I D+ + G LA S+ A+L + + L QQALVV+ L L +I+ L Sbjct: 71 IADVSTAGLFGQHALAYSVTAFLALSRQRQLVMFNLGQQALVVLGLMLTNQLIMVVVRML 130 Query: 125 VINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQ 158 + F ++ +LWP + LM +Q Sbjct: 131 TGSAFVGWSYFLPPLIGALLWPLLTKLMLIPYRQ 164 >UniRef50_Q5QWE3 Rod shape-determining protein n=2 Tax=Idiomarina RepID=Q5QWE3_IDILO Length = 161 Score = 119 bits (300), Expect = 2e-26, Method: Composition-based stats. Identities = 66/156 (42%), Positives = 96/156 (61%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 G + ++++IAL L +MP P FRP+W L++LYWI+ALPHRVN+GT V+G + Sbjct: 5 KPGFITLLITYIIALTLMVMPMPAAFDTFRPDWPTLVMLYWIIALPHRVNMGTALVLGVL 64 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 D++ GS +GV L M ++ Y A +Q RN AL QQALV+ +L + +VF A + Sbjct: 65 SDILLGSIVGVHALGMVVVTYFAARHFQRIRNFALIQQALVIAVLIFIKRFVVFEANVFL 124 Query: 126 INVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 + F FW + + V W W+F L+RKVR+QF V Sbjct: 125 HDAEFTFSYFWPVLTSAVFWLWVFPLLRKVRRQFGV 160 >UniRef50_B2SMY7 Rod shape-determining protein MreD n=20 Tax=Xanthomonadaceae RepID=B2SMY7_XANOP Length = 161 Score = 117 bits (293), Expect = 1e-25, Method: Composition-based stats. Identities = 47/152 (30%), Positives = 79/152 (51%) Query: 5 RSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGA 64 R + W++ S IAL+L ++P P + RP W+ L+L YW++ P RV +G FV G Sbjct: 3 RMRNTWILPASIFIALVLGLLPLPTVVQPLRPYWLALVLAYWVIEEPDRVGLGLAFVAGV 62 Query: 65 ILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFL 124 + DL+ G LG + L + I+ +++ R + QQAL + L L I+ Sbjct: 63 LADLLYGGLLGEQALRLVIMTFILQRFRARMRFFPMSQQALAIGGLLLNDRIVSSAVHLA 122 Query: 125 VINVSFRPEVFWSSVVNGVLWPWIFLLMRKVR 156 V + +W+ ++ VLWP +F+++ VR Sbjct: 123 VGEPTLPWSYWWAPLLGIVLWPPLFVVLDAVR 154 >UniRef50_B7V018 Rod shape-determining protein MreD n=21 Tax=Pseudomonadaceae RepID=B7V018_PSEA8 Length = 164 Score = 117 bits (293), Expect = 2e-25, Method: Composition-based stats. Identities = 53/161 (32%), Positives = 90/161 (55%) Query: 2 ASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFV 61 A+ S WVIWLS L+ L+L + P P + RP W+ ++L YW+L LP RV + T ++ Sbjct: 4 ATQGSNNVWVIWLSLLVGLVLAVAPMPTFTEIGRPLWLAMLLTYWVLLLPERVGMVTAWL 63 Query: 62 MGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWA 121 +G D++ G+ LG L + +I +LV +Q R WQQ LV++++ + ++ W Sbjct: 64 LGLAQDVLYGNLLGQNALILGLITFLVLSLHQRLRMFPAWQQCLVLVVVYGLAQLLQLWL 123 Query: 122 EFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 L N ++V+ +LWPW++ L++ VR + V+ Sbjct: 124 NALTGNRPPTLTFLLPALVSALLWPWVYALLQFVRLRLNVR 164 >UniRef50_Q07WQ1 Rod shape-determining protein MreD n=21 Tax=Shewanella RepID=Q07WQ1_SHEFN Length = 163 Score = 116 bits (290), Expect = 4e-25, Method: Composition-based stats. Identities = 57/163 (34%), Positives = 108/163 (66%), Gaps = 1/163 (0%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M+++ + GR V+WL+ I ++ QIMP P + +RP+W+L++++YW +ALPHR ++ T + Sbjct: 1 MSAHIANGRLVVWLTLFIGMMFQIMPLPKMVEAWRPDWLLMVMMYWAMALPHRYSILTAW 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 ++G +LD++ G+ LG+R LA+S++ Y+V L Q RN WQQ+L+V + ++FW Sbjct: 61 LLGVMLDVLLGAHLGIRSLALSLVIYIVVLLCQQLRNYPRWQQSLLVACFICIYHAVIFW 120 Query: 121 AEF-LVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 +F +V F ++F ++ + +W W+F ++R +R+ + V+ Sbjct: 121 VQFVVVGAAPFNVDMFLPAISSLFIWWWVFWVLRNMRRHYKVR 163 >UniRef50_C5BSY4 Rod shape-determining protein MreD n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BSY4_TERTT Length = 163 Score = 115 bits (289), Expect = 4e-25, Method: Composition-based stats. Identities = 34/161 (21%), Positives = 79/161 (49%) Query: 2 ASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFV 61 + + LS L+ ++P + RP + L++++W++ P ++ + GF+ Sbjct: 3 TPKQRNYALFLGLSIAFGLVFAVLPLTQDFSYLRPELLCLLVIFWVMNSPEQLGMTFGFL 62 Query: 62 MGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWA 121 +G + D++ G +A++IIAY+ + YQ R+ ++W Q+L V +L V ++V W Sbjct: 63 VGLLQDVVELGVWGGHAMALTIIAYICLMSYQRIRSYSVWHQSLWVFILVGVHQVVVNWV 122 Query: 122 EFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + + + + +++ + WP + ++R + Q Sbjct: 123 QGIAGYRTPAHYLVLPTLMTALCWPLVVFFFLRIRHLYRTQ 163 >UniRef50_Q0KFF4 Rod shape-determining protein MreD n=12 Tax=Burkholderiales RepID=Q0KFF4_RALEH Length = 170 Score = 115 bits (288), Expect = 5e-25, Method: Composition-based stats. Identities = 38/154 (24%), Positives = 73/154 (47%), Gaps = 2/154 (1%) Query: 5 RSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGA 64 R I SF++A L +MPW L + P+ V L+L++W + P +V +G F++G Sbjct: 9 RPVNPAFIAFSFVLAFLFNLMPWGTTL--WVPDMVALVLVFWNIHQPRKVGMGVAFLLGL 66 Query: 65 ILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFL 124 ++D+ LG LA +++AY ++ ++ QAL V+ L VV + Sbjct: 67 LMDVHDARLLGEHALAYTLLAYFAITIHRRVLWFTVYTQALHVLPLLFVVHAVPVLIRLA 126 Query: 125 VINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQ 158 + ++ + + +LWP L+ +++ Sbjct: 127 MGAPLPGWQLLLAPAIEALLWPLATSLLLAPQRR 160 >UniRef50_B5JU59 Rod shape-determining protein MreD n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JU59_9GAMM Length = 155 Score = 114 bits (287), Expect = 9e-25, Method: Composition-based stats. Identities = 52/149 (34%), Positives = 86/149 (57%), Gaps = 1/149 (0%) Query: 11 VIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLIS 70 ++ + ++A++ ++P P+ FRP+ V L+L+YW LA P ++ + TGF MG +LD++ Sbjct: 4 LVTTTLVLAVIFTLVPLPETAAWFRPDIVALVLMYWWLAHPEKIGIYTGFFMGLLLDVMQ 63 Query: 71 GSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWA-EFLVINVS 129 GS LGV + IIA++ YQ R L L QQAL+V + L+ I FW + S Sbjct: 64 GSLLGVHGCGLVIIAWIFLKNYQRIRVLPLVQQALIVFFVLLIKYFIGFWVDNHRIQGFS 123 Query: 130 FRPEVFWSSVVNGVLWPWIFLLMRKVRQQ 158 F + +LWPW+F+ +R +R++ Sbjct: 124 GTLLYFAPCLTGAILWPWLFVTLRDLRRR 152 >UniRef50_A4BLX4 Rod shape-determining protein MreD n=1 Tax=Nitrococcus mobilis Nb-231 RepID=A4BLX4_9GAMM Length = 134 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 48/133 (36%), Positives = 74/133 (55%) Query: 30 NLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVA 89 RP W LIL+YW +ALP RV V + +G + D++ G LG LA S+ A+L Sbjct: 2 WAKPLRPEWTALILIYWCMALPQRVGVTVAWTVGLLQDVLQGFLLGAHALAFSVAAFLTL 61 Query: 90 LKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPWIF 149 ++ R LWQQAL +LL LV+ +I+ W L+ + + + ++ LWP +F Sbjct: 62 KLHRQIRVFPLWQQALSTLLLLLVIRLILLWTRGLIGHPGVDWQYWLPALTGAALWPPLF 121 Query: 150 LLMRKVRQQFAVQ 162 L +R VR++F V+ Sbjct: 122 LGLRAVRRRFQVR 134 >UniRef50_C0N753 Rod shape-determining protein MreD n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N753_9GAMM Length = 159 Score = 114 bits (286), Expect = 1e-24, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 92/161 (57%), Gaps = 4/161 (2%) Query: 2 ASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFV 61 + S+ VI L+ ++A+LL ++P P+ FRP WV+L L+YW +ALPHRV++G G++ Sbjct: 3 TTAESRNGVVIILTLIVAMLLMLVPLPETARYFRPEWVVLTLVYWAMALPHRVSIGVGWL 62 Query: 62 MGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWA 121 +G ++D+ G TLG+ + + YL+A + R LWQQAL ++ + ++V Sbjct: 63 VGLLMDVTMGGTLGIMAFSYAFAVYLIARFHLQLRQYPLWQQALTILSVV----VVVHLV 118 Query: 122 EFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + ++ + + +LWP +F +RK+R+ F V Sbjct: 119 SVVTSKSESTWLIWMPVLTSTLLWPVMFATLRKIRRTFQVS 159 >UniRef50_Q60CK4 Rod shape-determining protein MreD n=1 Tax=Methylococcus capsulatus RepID=Q60CK4_METCA Length = 163 Score = 114 bits (285), Expect = 1e-24, Method: Composition-based stats. Identities = 45/158 (28%), Positives = 92/158 (58%) Query: 3 SYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVM 62 + R+ R +I+ S A+ ++I+P P + ++ P+W+LL+L+YW + P RV VGT ++ Sbjct: 4 TRRTPSRILIFASLAAAMAMRIVPLPQDWALWNPDWILLVLIYWAVMAPDRVGVGTAWLT 63 Query: 63 GAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAE 122 G + D ++G LG LA S++ Y+ ++ FR ++ QQ L V+LL + ++ W Sbjct: 64 GLLADALTGRLLGQDALAYSVVIYVGVRFHRRFRVYSMVQQVLAVVLLLGLGLLLTLWTR 123 Query: 123 FLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFA 160 + S +++++ G++WPW+ + + +R+++ Sbjct: 124 HIRGLASAPEGYWFAALSGGLVWPWVRVALDGLRRRYG 161 >UniRef50_A4BGL4 Rod shape-determining protein MreD n=1 Tax=Reinekea blandensis MED297 RepID=A4BGL4_9GAMM Length = 161 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 50/162 (30%), Positives = 89/162 (54%), Gaps = 1/162 (0%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M G W+I ++F + L +P + RP+WV +++++W+L LP R + F Sbjct: 1 MKQKPPHGLWLIIITFFVGFFLAAIPM-GRFEIARPDWVGMLIIFWVLVLPERFGIFVSF 59 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 +G + D ++G+TLG+ S +AY V L + R L QQA+VV L+ V I+ W Sbjct: 60 GVGILFDTLAGTTLGLYAFVYSGLAYTVLLLHARLRMYPLGQQAMVVFLILGVTHIVAQW 119 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + +++V W ++ + V+WPW++ L+R ++ +F VQ Sbjct: 120 LKVWLMSVVSGELHIWPALTSAVVWPWVYGLLRTLQIKFRVQ 161 >UniRef50_C4GIM3 Putative uncharacterized protein n=1 Tax=Kingella oralis ATCC 51147 RepID=C4GIM3_9NEIS Length = 167 Score = 112 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 44/159 (27%), Positives = 83/159 (52%) Query: 4 YRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMG 63 Y + +I++SFL+A+L+ +P +L + P + L+L+YWI+ P V++GT F++G Sbjct: 8 YSKIQKRLIYISFLLAILIDFIPLSGSLFHWLPEFTALMLMYWIINRPQNVDIGTAFILG 67 Query: 64 AILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEF 123 ++D+ + ++LG LA I AY+V + QA+V+ L ++I+ + Sbjct: 68 LLMDIGTNASLGGHALAYVIAAYIVIQNRRQIVLYHYGVQAVVIFAALLCSEMILTVVRW 127 Query: 124 LVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + + VF S VV +LWP + +M + + Sbjct: 128 RYTHHFYGWTVFLSPVVGALLWPLLNKIMVSLLNFLNSR 166 >UniRef50_A4A5B4 Rod shape-determining protein MreD n=1 Tax=Congregibacter litoralis KT71 RepID=A4A5B4_9GAMM Length = 161 Score = 112 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 54/160 (33%), Positives = 91/160 (56%) Query: 3 SYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVM 62 S R WVI S L A +L ++P L+ +RP W+LL+L+YW +ALPHRV + T V+ Sbjct: 2 SERMNAYWVILASLLFAAVLAVIPLTRALLWWRPEWILLVLVYWTIALPHRVGLVTALVV 61 Query: 63 GAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAE 122 G +D++ G+ +G +L++S++ L L YQ R L QQ+ V+ LL+ + +I W + Sbjct: 62 GLFVDVMEGAVIGQNMLSLSVVVTLAGLMYQRLRVFTLVQQSSVIFLLAGLHQLITQWLQ 121 Query: 123 FLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 L + ++ +LWP + L+R++R+ + V Sbjct: 122 GLQGGAVPGFGFLFPALSTALLWPLLMPLLRELRRSYKVH 161 >UniRef50_A0Z7H0 Rod shape-determining protein n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z7H0_9GAMM Length = 160 Score = 112 bits (282), Expect = 3e-24, Method: Composition-based stats. Identities = 50/156 (32%), Positives = 79/156 (50%) Query: 7 QGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAIL 66 +G WVI S LIALLL +P P + + P+W LL L YW+LALP+RV V + V+G + Sbjct: 5 RGSWVIVGSILIALLLVAIPVPVSWREYTPDWPLLFLFYWVLALPNRVGVLSACVVGILT 64 Query: 67 DLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVI 126 DL+ GS G + + ++ + YQ R +Q LV+ LL +V ++ E + Sbjct: 65 DLLDGSPAGATAIGAVMAVLVILVSYQRIRQFDGLKQGLVMALLISLVHLVEQRLETFLG 124 Query: 127 NVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + V+ + W + +R R+ + VQ Sbjct: 125 WQHSSTAFLMPAAVSFLFWVPVRNCLRFFRRYYEVQ 160 >UniRef50_B8GL91 Rod shape-determining protein MreD n=2 Tax=Thioalkalivibrio RepID=B8GL91_THISH Length = 163 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 57/159 (35%), Positives = 90/159 (56%) Query: 3 SYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVM 62 S W I L+F++AL L ++P PD +RP W+ + L+YW +ALP R+ VG G+ + Sbjct: 2 SNPRGWVWAIPLTFIVALALTVVPLPDWAAPWRPQWLAMTLIYWSMALPRRIGVGLGWFL 61 Query: 63 GAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAE 122 G +LD +G+ LG L ++IAYL +Q R LWQQAL V L + ++V W Sbjct: 62 GLLLDAATGALLGQHALGFALIAYLSIRMHQRVRVFPLWQQALTVGGLLALHLLLVLWIL 121 Query: 123 FLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 + + V + +LWPW+F+L+R VR+++ + Sbjct: 122 GMTGRAPGTWLYWAPLVSSMILWPWLFVLLRDVRRRWCL 160 >UniRef50_C7RML3 Rod shape-determining protein MreD n=3 Tax=Betaproteobacteria RepID=C7RML3_9PROT Length = 173 Score = 112 bits (281), Expect = 3e-24, Method: Composition-based stats. Identities = 44/153 (28%), Positives = 69/153 (45%), Gaps = 2/153 (1%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 W I + LIALL +P + V P+WV L L++W + P RV +G F+ G Sbjct: 13 PVRPWFIASTLLIALLFNFLPTANWPGV--PDWVALALVFWCVREPRRVGMGLAFLFGLA 70 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 +D+ S LG LA ++AY + + L QQAL V L L+V ++ +V Sbjct: 71 MDVADASLLGQHALAYVLVAYGASSLSRRILWFPLGQQALQVFPLLLLVQLVQLGVRTIV 130 Query: 126 INVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQ 158 F + +LWP + ++ + Q Sbjct: 131 GADFPGLAYFVGPCLAALLWPLLTFVLLLPQHQ 163 >UniRef50_B7RTI7 Rod shape-determining protein MreD n=2 Tax=unclassified Gammaproteobacteria (miscellaneous) RepID=B7RTI7_9GAMM Length = 162 Score = 111 bits (279), Expect = 7e-24, Method: Composition-based stats. Identities = 53/162 (32%), Positives = 90/162 (55%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M W++ SF AL+L ++P+P L RP WVLL+L+YW++ALP RV + T Sbjct: 1 MVDQGPNAYWLVLASFFCALILAVLPFPHWLAWGRPEWVLLVLVYWVIALPQRVGLITAL 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 ++G +LD++ G+ +G A+ ++ L L YQ R +L QQA +V +L+ + +I W Sbjct: 61 LLGLMLDVVEGAVIGQNAFALVVVTLLALLLYQRLRVFSLAQQAAIVFVLAGLNQMICQW 120 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + L S + + +LWP++ L+R +R+ + V Sbjct: 121 VQNLEGAGSTTLMFLLPAFSSALLWPFVLHLLRGLRRLYGVS 162 >UniRef50_A1WVS1 Rod shape-determining protein MreD n=2 Tax=Ectothiorhodospiraceae RepID=A1WVS1_HALHL Length = 163 Score = 111 bits (278), Expect = 9e-24, Method: Composition-based stats. Identities = 67/163 (41%), Positives = 101/163 (61%), Gaps = 1/163 (0%) Query: 1 MASYRSQ-GRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTG 59 M +R + G +I LSF+IAL+L I+P P FRP W LILLYW LALP RV VG G Sbjct: 1 MTGHRPRNGGGIILLSFIIALMLTIVPMPGWAQEFRPEWTALILLYWGLALPERVGVGVG 60 Query: 60 FVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVF 119 +++G D + G+ LG LA ++IA+L +Q R + +WQQA+VV+ L +V ++VF Sbjct: 61 WLVGLFQDALLGTLLGQHALAFALIAFLALRLHQHLRLVPVWQQAVVVLGLLVVAQLVVF 120 Query: 120 WAEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 W ++ + + + + +V +WP +F +MR VR++F VQ Sbjct: 121 WINGIIGRPAPEWQAWAAILVGAAIWPLVFHIMRGVRRRFQVQ 163 >UniRef50_Q1QVB9 Rod shape-determining protein MreD n=1 Tax=Chromohalobacter salexigens DSM 3043 RepID=Q1QVB9_CHRSD Length = 159 Score = 111 bits (277), Expect = 1e-23, Method: Composition-based stats. Identities = 60/157 (38%), Positives = 95/157 (60%) Query: 5 RSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGA 64 R G IWL+ +I+L LQ+MP PD +++RPNW+ L L YW + P RV V GFV G Sbjct: 2 RLPGLIAIWLTLVISLCLQVMPLPDAWLMWRPNWLGLALAYWCVTAPQRVGVFHGFVCGL 61 Query: 65 ILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFL 124 +LDLI G+ LG L +S++ YL L YQ R ++WQQA+++ +L ++ ++ W + Sbjct: 62 LLDLIEGTPLGQNALTLSLLTYLCLLLYQRLRAYSIWQQAVMLFVLLGLIQLVEQWLRTI 121 Query: 125 VINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 VS +++ G LWPW+F +M+ +R++ + Sbjct: 122 FGPVSIHLAFLLPALIGGALWPWLFTMMQVLRRRLGI 158 >UniRef50_A9N8Z0 Rod shape-determining protein MreD n=7 Tax=Coxiella burnetii RepID=A9N8Z0_COXBR Length = 162 Score = 110 bits (275), Expect = 2e-23, Method: Composition-based stats. Identities = 46/161 (28%), Positives = 90/161 (55%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M ++ I L+ ++A++L I+P P + ++P W+ ++LL+W++ALP+RV +G F Sbjct: 1 MEGNYAKDVLAIGLTLIMAMMLTILPLPAWAVWYQPAWIFMVLLFWMIALPYRVGIGAAF 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 + G + DL+SG+ LG L +IIAY + R+L WQQ ++V + + V + +W Sbjct: 61 IWGLLFDLLSGTILGQHALIFTIIAYFIIRFQTPLRSLPNWQQMILVFIATAVYLALQYW 120 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 + + + + +LWPW+ +L++ + +F + Sbjct: 121 IMAMADASPETAKYWLPLMSTTLLWPWVRVLLKDYQSRFRL 161 >UniRef50_C0DXR0 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DXR0_EIKCO Length = 167 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 41/159 (25%), Positives = 73/159 (45%) Query: 4 YRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMG 63 S + + SFL+ LL+ +P P++ L++L YW+L P + +G F +G Sbjct: 8 KESTPKRWVAFSFLLVLLIDFIPVAPPWAYPLPDFTLIMLAYWLLHRPQLIGIGVAFCLG 67 Query: 64 AILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEF 123 ++D+ S S LG LA S+ A+L+ + + QA+ V LV ++VF Sbjct: 68 LLVDIGSNSLLGQHGLAYSVAAFLIERNRRQIVLNSFGWQAVAVAGAMLVSQLVVFLVSL 127 Query: 124 LVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 ++ S+V G+LWP + +M + + Sbjct: 128 FQQQPFPLWRLWLPSIVTGLLWPQLNNVMLAIAHYRRPR 166 >UniRef50_B8KR95 Rod shape-determining protein MreD n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KR95_9GAMM Length = 160 Score = 109 bits (273), Expect = 3e-23, Method: Composition-based stats. Identities = 51/158 (32%), Positives = 82/158 (51%) Query: 4 YRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMG 63 R+Q WVI ++ ++ALLL P P FRP LL+L YW+LALP RV + + V+G Sbjct: 2 ERAQAVWVIPVTLMVALLLHAAPLPFEWRWFRPELPLLVLFYWVLALPQRVGLLSAAVIG 61 Query: 64 AILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEF 123 +DL+ GS LG L + + ++ YQ R L+QQ L++ LL + + W Sbjct: 62 IGIDLLEGSALGGLALGLVVSTLVLLFTYQRIRQFNLFQQCLLMGLLIALALTVENWVHK 121 Query: 124 LVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 + + + W ++V+ W I +R +R+ + V Sbjct: 122 FMALPTGGMQFLWPALVSMPFWAVIRKPLRGLRRYYGV 159 >UniRef50_B3PC04 Putative rod shape-determining protein MreD n=1 Tax=Cellvibrio japonicus Ueda107 RepID=B3PC04_CELJU Length = 161 Score = 109 bits (272), Expect = 4e-23, Method: Composition-based stats. Identities = 35/140 (25%), Positives = 68/140 (48%) Query: 23 QIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMS 82 + P P +RP +VL++ +YW+L +P V++ V+G DL+ G L + Sbjct: 22 SVYPLPFIWQWWRPEFVLVVAIYWMLNMPQSVSLVFLCVLGLFQDLLESVPFGQHSLGLI 81 Query: 83 IIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVVNG 142 I+AY+ L YQ RN W+QA V +L + + W + + + +V + Sbjct: 82 IVAYICFLSYQRVRNFPRWKQAGWVFVLVGIAQLTDNWVQSMAGRQLSGVAFLYPAVTSA 141 Query: 143 VLWPWIFLLMRKVRQQFAVQ 162 + WP+ + + ++ Q++ + Sbjct: 142 IFWPFCCVWLDRLCQRYQLH 161 >UniRef50_A1U482 Rod shape-determining protein MreD n=3 Tax=Marinobacter RepID=A1U482_MARAV Length = 158 Score = 109 bits (272), Expect = 5e-23, Method: Composition-based stats. Identities = 39/150 (26%), Positives = 80/150 (53%) Query: 11 VIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLIS 70 + ++ +++L+L I +P + FRP W+ LI+ YW P + + + +G +LD++ Sbjct: 9 LFAITVVLSLVLSISLFPVDWFQFRPEWLGLIVFYWTFRAPAQFGILMAWCLGLLLDILE 68 Query: 71 GSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSF 130 + LGV + M++IA+LV +Q R L QQ L+V LL + ++V + + L+ S Sbjct: 69 STPLGVNAMGMALIAFLVLTIHQRLRMYPLPQQCLMVFLLLGINQMLVHFVKQLLGAESA 128 Query: 131 RPEVFWSSVVNGVLWPWIFLLMRKVRQQFA 160 W ++ + + WP + ++ + ++ Sbjct: 129 GFSYLWPALTSALAWPVVSGVLDTINRKLG 158 >UniRef50_Q21FT2 Rod shape-determining protein MreD n=1 Tax=Saccharophagus degradans 2-40 RepID=Q21FT2_SACD2 Length = 162 Score = 108 bits (271), Expect = 6e-23, Method: Composition-based stats. Identities = 40/148 (27%), Positives = 68/148 (45%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M + +S AL+L I P P RP L+++YW++ P V T + Sbjct: 1 MPNLGLSFYIFFCVSAFFALVLSIYPIPHAYAALRPELFCLLVVYWVINYPQYFGVTTAW 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 +MG LD++ + G L ++ +AY+ YQ R+ +LWQQ L V + + +IV W Sbjct: 61 LMGLFLDVVHSTVWGAHALGLAAVAYICLSSYQRIRSYSLWQQTLWVFVFVGIHQVIVNW 120 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWI 148 L + ++ V+ + WP + Sbjct: 121 MLGLSGYHKPTHIILVTTAVSALSWPVM 148 >UniRef50_A9I0I9 Rod shape-determining protein MreD n=5 Tax=Bordetella RepID=A9I0I9_BORPD Length = 187 Score = 107 bits (269), Expect = 9e-23, Method: Composition-based stats. Identities = 30/153 (19%), Positives = 67/153 (43%), Gaps = 2/153 (1%) Query: 5 RSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGA 64 R +W + L+A LL ++PW + P+ + L+L +W + P RV + F G Sbjct: 27 RPAHGAFVWGTLLLAWLLSLLPW--RVWEGAPDILALVLAFWCVHEPRRVGLVAAFCFGV 84 Query: 65 ILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFL 124 ++D+ S LG L+ ++ AY ++ + LW QA+ ++ + + ++ Sbjct: 85 LMDVHDASVLGGHALSYTLTAYGAVALHRRLQRFDLWSQAMHMLPVFFLARLVQQMVLAW 144 Query: 125 VINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQ 157 + + ++ +WP ++ ++ Sbjct: 145 LAGKWPGWDWTLGVLLTVAIWPLAGWVLHLPQR 177 >UniRef50_C5V1V9 Rod shape-determining protein MreD n=1 Tax=Gallionella ferruginea ES-2 RepID=C5V1V9_9PROT Length = 170 Score = 107 bits (269), Expect = 9e-23, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 68/153 (44%), Gaps = 1/153 (0%) Query: 5 RSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGA 64 R I S + ALLL +PW + P++V ++LLYW P R+ VG + +G Sbjct: 13 RPVSTMFIVTSIVTALLLNGLPWGGLWLTLHPDFVAVVLLYWCTHKPLRIGVGLSWAIGI 72 Query: 65 ILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFL 124 + D+ S G LA +++A+ + + R L +Q V+++ + + Sbjct: 73 LADVGDASLFGQHALAYTLLAFGGVVLSRRIRMFDLREQTTQVLVILFSTYAVYALVQ-W 131 Query: 125 VINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQ 157 +N F + + +LW + L + +RQ Sbjct: 132 QVNGQIVWTYFLGCLTSTLLWVPMSSLFQSMRQ 164 >UniRef50_Q21RI3 Rod shape-determining protein MreD n=66 Tax=Burkholderiales RepID=Q21RI3_RHOFD Length = 176 Score = 106 bits (266), Expect = 2e-22, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 71/155 (45%), Gaps = 2/155 (1%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNL--IVFRPNWVLLILLYWILALPHRVNVGTGFVMG 63 + IW S + ALLL ++ + P+ + L+L++W + P R+ +G FV G Sbjct: 12 PANPFFIWGSLVAALLLNMLQNMGLWGRAAWMPDLLALVLVFWSIHQPQRIGIGAAFVFG 71 Query: 64 AILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEF 123 +D+ G+ LG L+ +++++L ++ + QA V+ L + I Sbjct: 72 IFVDVHQGAMLGQHALSYTVLSFLAIAIHRRLLWFPVPSQAFQVLPLFVAAHAIALSVRM 131 Query: 124 LVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQ 158 L + + ++ +LWP + +L+ +++ Sbjct: 132 LAGGGFPGFWLLLAPLIESLLWPVVSVLLLMPQRR 166 >UniRef50_C1D5N3 MreD n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1D5N3_LARHH Length = 168 Score = 106 bits (265), Expect = 3e-22, Method: Composition-based stats. Identities = 46/153 (30%), Positives = 80/153 (52%), Gaps = 1/153 (0%) Query: 5 RSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGA 64 R + I LS +AL+++++P P++V L++LYW + P R +G F++G Sbjct: 9 RPVRKRWIALSLALALVVELLPLSGPAR-LTPDFVALLVLYWNINQPSRFGIGLSFLVGL 67 Query: 65 ILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFL 124 I D S +G LA ++I+YLV L+ + +L QQAL+V+ L L+ I++ A Sbjct: 68 IGDFFSAGLIGQHALAYTVISYLVLLRQRQIAMYSLGQQALIVLGLLLLSQAIMWLARMA 127 Query: 125 VINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQ 157 + V F S V +LWP + ++ ++ Sbjct: 128 LGGVVVGWSYFMSPFVGALLWPLLTTILLWPQR 160 >UniRef50_Q1GYC9 Rod shape-determining protein MreD n=3 Tax=Methylophilaceae RepID=Q1GYC9_METFK Length = 159 Score = 106 bits (264), Expect = 4e-22, Method: Composition-based stats. Identities = 47/139 (33%), Positives = 72/139 (51%) Query: 12 IWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISG 71 ++LS L+ALL+QI+PW +L+ RP ++LL +LYW L PH N+GT + G ++DL SG Sbjct: 9 VYLSLLVALLMQILPWSGSLLTIRPEFLLLTVLYWTLRAPHLCNIGTAWFAGLMMDLASG 68 Query: 72 STLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFR 131 G LA S ++ + +WQQA V LL L+ +I + Sbjct: 69 GLFGQFALAYSAASFFAVSYQRRLALFNIWQQAGYVFLLLLLSQVITLVLKLFSGGELPG 128 Query: 132 PEVFWSSVVNGVLWPWIFL 150 + F SV +LW ++ Sbjct: 129 WQYFLPSVSGILLWQFVTF 147 >UniRef50_C7I0H6 Rod shape-determining protein MreD n=4 Tax=Burkholderiales RepID=C7I0H6_THIIN Length = 178 Score = 105 bits (262), Expect = 6e-22, Method: Composition-based stats. Identities = 39/153 (25%), Positives = 68/153 (44%), Gaps = 2/153 (1%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 W I LS L+ALL+ +P + P+ V L L++W + P RV + FV+G Sbjct: 18 PVNPWFIALSLLMALLIDFLPLGRLA--WMPDMVALTLVFWNVHQPRRVGMAVAFVLGLA 75 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 +D+ GS LG L ++++Y ++ A QQAL V+ L + +++ Sbjct: 76 VDVQQGSVLGQHALIYTVLSYFAITLHRRLLWFAPLQQALHVLPLFVATQVLLLLVGMWA 135 Query: 126 INVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQ 158 + V LWP + L+ +++ Sbjct: 136 GGSFPGWAFLLAPFVQAALWPLLSWLLLAPQRR 168 >UniRef50_Q0VS68 Rod shape-determining protein MreD n=2 Tax=Alcanivorax RepID=Q0VS68_ALCBS Length = 163 Score = 104 bits (261), Expect = 8e-22, Method: Composition-based stats. Identities = 54/163 (33%), Positives = 93/163 (57%), Gaps = 1/163 (0%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M S R G VI ++ L+A LL+++P P ++ RP W+LL+L+YW+L LPHR+ V GF Sbjct: 1 MVSDRPAGTGVIIVTLLLAALLEVIPLPASIDWIRPEWMLLVLVYWVLVLPHRIGVLWGF 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 +G D++ G+TLG LA ++ A+++ Y+ R QQ V+ LL V ++ F Sbjct: 61 FVGLYHDVLVGTTLGQWGLATALGAFVMLAAYKRMRVFNGLQQCAVIFLLVGTVSLLAFL 120 Query: 121 AEFLVINVS-FRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + V + +SSV + ++W + ++R ++ +F V+ Sbjct: 121 VQESVGRTLYPPYTILYSSVSSALVWRPVCAVLRWIQLRFLVR 163 >UniRef50_A1K1T9 Rod shape-determining protein n=4 Tax=Rhodocyclaceae RepID=A1K1T9_AZOSB Length = 173 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 38/151 (25%), Positives = 66/151 (43%), Gaps = 2/151 (1%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 I+ S ++AL L +P V P+WV L+L +W + P R+ +G GF+ G + Sbjct: 13 PVRLGFIYFSLMVALALAYVPTGRFPGV--PDWVALVLAFWCIREPLRIGMGAGFLFGVL 70 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 +D+ G+ +G LA ++AYL + QAL V+ + L +++ + Sbjct: 71 VDIGQGAAMGQHALAYVVLAYLATGLARRVMWFPPLLQALHVLPMLLASQMLMVAVRLIA 130 Query: 126 INVSFRPEVFWSSVVNGVLWPWIFLLMRKVR 156 F SS LW + L+ + Sbjct: 131 GAEFPGWAYFLSSFTAVALWVPLNYLLLLPQ 161 >UniRef50_Q1ZG63 Hypothetical rod shape-determining protein MreD n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZG63_9GAMM Length = 157 Score = 104 bits (260), Expect = 1e-21, Method: Composition-based stats. Identities = 55/156 (35%), Positives = 91/156 (58%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 + +I+++F +ALL I P P L FRP+W++LI+ YW+LA P R+ + F +G I Sbjct: 1 MRHYSIIYITFFVALLCAIFPLPIFLNAFRPDWMILIIFYWVLATPQRIGIVHAFFIGLI 60 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 LD++ GS LG+ L S++AY V + +Q R L Q L++ + +L + + ++W Sbjct: 61 LDILLGSMLGMHALLFSLLAYFVCVDFQRIRYFTLVQTTLLIGIAALCIKLSLYWIASTQ 120 Query: 126 INVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 ++ FWS + ++WPW FL +R VR +F V Sbjct: 121 QDILLHKSYFWSIFSSMLIWPWFFLFLRMVRIRFKV 156 >UniRef50_B5F9L8 Rod shape-determining protein MreD n=89 Tax=Gammaproteobacteria RepID=B5F9L8_VIBFM Length = 163 Score = 104 bits (259), Expect = 2e-21, Method: Composition-based stats. Identities = 85/161 (52%), Positives = 120/161 (74%) Query: 2 ASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFV 61 +S+ +GR +IWLSFLIAL LQ PWP L V RP+W++L+ YW+LALPHRVNVGT V Sbjct: 3 SSHLMRGRVIIWLSFLIALTLQAAPWPGALEVLRPSWIILVTFYWVLALPHRVNVGTAMV 62 Query: 62 MGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWA 121 +G + DL+ G+TLG+R + M+I+ YLVA +++ RNLALWQQA + L+L+ I+ F Sbjct: 63 LGILWDLLLGTTLGIRGMTMAILVYLVAANFKVLRNLALWQQAAIFSGLTLLGKILEFMG 122 Query: 122 EFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 EFLV +VSF W+ V+N +LWPW+FLLMR+VR+ ++++ Sbjct: 123 EFLVHDVSFNAHFLWAGVLNFLLWPWLFLLMRRVRRHWSIR 163 >UniRef50_Q1MYL6 Rod shape-determining protein MreD n=1 Tax=Bermanella marisrubri RepID=Q1MYL6_9GAMM Length = 155 Score = 102 bits (254), Expect = 5e-21, Method: Composition-based stats. Identities = 48/155 (30%), Positives = 82/155 (52%), Gaps = 1/155 (0%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 VI +F +A +L ++P+P + RP WV + L++W + P R + GF MG + Sbjct: 1 MNAYAVILPTFFLAFVLSVLPFPRLIDFIRPEWVAMTLIFWCVLSPGRAGIFLGFFMGLL 60 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 D++ G LG LA+S++ YL AL R QQ+ +V ++ + ++ FW E L+ Sbjct: 61 FDVLHGQLLGQSALALSVLGYLCALMQSRMRIYNPLQQSFMVFVMVGLYLLMSFWIESLM 120 Query: 126 INVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFA 160 V + + W SV + ++WP + L+ +RQ F Sbjct: 121 G-VDRKTALLWPSVGSALIWPLWYNLLFAIRQFFR 154 >UniRef50_Q7VRC2 Rod shape-determining protein MreD n=2 Tax=Candidatus Blochmannia RepID=Q7VRC2_BLOFL Length = 162 Score = 100 bits (250), Expect = 2e-20, Method: Composition-based stats. Identities = 57/150 (38%), Positives = 104/150 (69%) Query: 12 IWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISG 71 I+ SF +A++LQ + + +P+W +++L+YWI+ +P+++N+GTGF +G ILD IS Sbjct: 12 IYCSFAVAIILQYVLFFSITWYLQPSWTMMLLIYWIVLIPNKINIGTGFFLGLILDCISC 71 Query: 72 STLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFR 131 STLG++ L+MSII+YL K LFR+ +WQQ++ ++L S + I F +FL+ +VS+ Sbjct: 72 STLGIQTLSMSIISYLTIRKIYLFRHTYVWQQSIFIVLFSFINQNIKFLIQFLMFSVSYS 131 Query: 132 PEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 P++F++ +++G++WP + L+ K+ + Sbjct: 132 PKIFYNCILDGIMWPVLIFLIHKINNSSKI 161 >UniRef50_C5TMH6 Rod shape-determining protein MreD n=5 Tax=Neisseria RepID=C5TMH6_NEIFL Length = 181 Score = 94.9 bits (235), Expect = 8e-19, Method: Composition-based stats. Identities = 38/160 (23%), Positives = 74/160 (46%) Query: 3 SYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVM 62 SYR+ ++ S ++ ++L MP+ + + P L+LLYW L P R +G F + Sbjct: 22 SYRAVPLHIMAASLIVMMILDFMPFSFDGFFWLPEMTALMLLYWTLHQPQRAGMGLAFAI 81 Query: 63 GAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAE 122 G I+D + +TLG+ L+ ++ Y + + + Q V+ L+ ++ A Sbjct: 82 GLIVDAATAATLGLHALSYVVMTYFILNRRRQIMLYGHIMQLAAVLAALLLNQAVLTVAR 141 Query: 123 FLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + + + F + V +LWP + LM V + + + Sbjct: 142 LFLNHQVITLQGFVAPFVGALLWPILSQLMLIVTRIYRSR 181 >UniRef50_A4T0H0 Rod shape-determining protein MreD n=2 Tax=Polynucleobacter necessarius RepID=A4T0H0_POLSQ Length = 174 Score = 93.3 bits (231), Expect = 3e-18, Method: Composition-based stats. Identities = 30/156 (19%), Positives = 76/156 (48%), Gaps = 4/156 (2%) Query: 5 RSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGA 64 R I+ S ALLL ++P + + P+W+++ +++W + V+V T F++G Sbjct: 11 RPVNPVFIYFSLFCALLLNLLPIGNY--GWVPDWLIICMVFWNIHQHRYVSVITAFILGL 68 Query: 65 ILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFL 124 ++D+ + LG+ + S++AY+ ++ L + QA+ ++ + L+V + + Sbjct: 69 MMDVHNSDLLGLHAFSYSLVAYVAISWHRRIVALTVLSQAVHLLPVFLLVALFPVLVHWA 128 Query: 125 VINVSFRPEVF--WSSVVNGVLWPWIFLLMRKVRQQ 158 + + + + + +LWP ++ +++ Sbjct: 129 LSGELYWWALTGAVQAFIEAMLWPLATRILLAPQRR 164 >UniRef50_UPI00016994A6 Rod shape-determining protein MreD n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI00016994A6 Length = 106 Score = 91.4 bits (226), Expect = 9e-18, Method: Composition-based stats. Identities = 42/98 (42%), Positives = 61/98 (62%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M + ++ L+ +L +MP PD FRP WV LIL+YW +ALP RVNVGTG+ Sbjct: 1 MNANVQGRLYIAHLTLAFGFVLAVMPMPDWASNFRPQWVTLILIYWCMALPERVNVGTGW 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNL 98 + G +LD++SGS LG LA++++++L YQ R L Sbjct: 61 LAGLLLDVLSGSMLGQHALALAVVSFLTLNIYQRVRVL 98 >UniRef50_Q2SBH0 Cell shape-determining protein n=1 Tax=Hahella chejuensis KCTC 2396 RepID=Q2SBH0_HAHCH Length = 157 Score = 91.4 bits (226), Expect = 1e-17, Method: Composition-based stats. Identities = 40/149 (26%), Positives = 73/149 (48%) Query: 9 RWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDL 68 + + +A + ++P FRP + +++ YW L P + G+ +G + D+ Sbjct: 8 PVLFVFTLFLAFCVSLIPLGGFAAYFRPESICMVMFYWTLKHPGACGILVGWCVGLLWDV 67 Query: 69 ISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINV 128 + GSTLGV LA+++ AYLV Q + L QQ+ VV ++ +V ++ W L+ Sbjct: 68 LMGSTLGVHALALALQAYLVLKMLQRLQMFPLIQQSFVVFIIVGIVLMLFRWINGLLAQP 127 Query: 129 SFRPEVFWSSVVNGVLWPWIFLLMRKVRQ 157 + ++ + +LWP LLM K+ Sbjct: 128 ATDMAYLLGALSSALLWPLFSLLMEKLEN 156 >UniRef50_Q8D1V7 MreD protein n=1 Tax=Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis RepID=Q8D1V7_WIGBR Length = 168 Score = 90.6 bits (224), Expect = 2e-17, Method: Composition-based stats. Identities = 52/161 (32%), Positives = 97/161 (60%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M ++I+ FLI+L+LQI+ WP N + +P+WV +I +L P ++N+GTGF Sbjct: 1 MNKLNLIRIFIIYSLFLISLILQIISWPQNFNLLKPSWVYIIFSCLLLIYPEKINIGTGF 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 ++G ILDL GSTLG+ +++S +AYL+ + + F +L++Q+L + +V + + Sbjct: 61 ILGLILDLHLGSTLGMHSISISFLAYLILINIKYFYKTSLFKQSLYISFFISIVKLSILI 120 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 + ++ N + F + +++ ++WPWIF L++ + F V Sbjct: 121 IQLVISNTLLQINFFENILIDIIMWPWIFSLIKNILCYFNV 161 >UniRef50_A8PNB8 Rod shape-determining protein MreD n=1 Tax=Rickettsiella grylli RepID=A8PNB8_9COXI Length = 161 Score = 89.8 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 45/153 (29%), Positives = 81/153 (52%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M + +SF A+LL I+P P +F P W+ L+L+YWI+ LP ++ + Sbjct: 1 MRPLYFSTLCFMVISFSGAILLNILPLPPMFALFFPLWLPLVLIYWIMVLPGHIHFTLAW 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 ++G +D++ GS LG LA+ ++AYL + FR + QQ L V ++ ++ I+ Sbjct: 61 LLGLFIDVLYGSYLGEHSLALCVVAYLAYRFHLQFRMFPVPQQMLFVFVMLIIYQTILIV 120 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMR 153 + + V V+ S +++ ++WP I L+R Sbjct: 121 TQAWLGFVIDFRWVWISLLMSALIWPLITYLLR 153 >UniRef50_B0VS17 Rod shape-determining protein n=17 Tax=Acinetobacter RepID=B0VS17_ACIBS Length = 163 Score = 89.8 bits (222), Expect = 3e-17, Method: Composition-based stats. Identities = 36/154 (23%), Positives = 69/154 (44%), Gaps = 2/154 (1%) Query: 4 YRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMG 63 R W I LS ++ +L I P ++ +RP ++L+I+L+W++ P V F MG Sbjct: 10 KRKDPLWGIILSIIVGSVLMIYPLSYDISGWRPLFMLMIMLFWVVCQPTWCGVWFAFGMG 69 Query: 64 AILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEF 123 DL+ + LG+ L+ I+ ++ + R L + L ++ + W Sbjct: 70 IFTDLLLDAPLGLNALSFVIVTFITRFLIRERRILTFGN-LWTIATLVIIAHLAFMWVTQ 128 Query: 124 LVINVSFRPEVFWSSVVNGVL-WPWIFLLMRKVR 156 + + F W ++ +L WP ++ + K R Sbjct: 129 TMGGIHFSIARHWQPLMTSILTWPVVYYCLAKWR 162 >UniRef50_Q3SM35 Putative uncharacterized protein n=1 Tax=Thiobacillus denitrificans ATCC 25259 RepID=Q3SM35_THIDA Length = 166 Score = 89.5 bits (221), Expect = 3e-17, Method: Composition-based stats. Identities = 41/145 (28%), Positives = 68/145 (46%) Query: 12 IWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISG 71 I S +A+L++ +PW +V RP++VL+ LL+W+L P RV G F +G I D G Sbjct: 14 ILGSLTLAVLVEQLPWSGLAMVLRPDFVLVALLFWVLHQPQRVGFGIAFFLGLIADFQDG 73 Query: 72 STLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFR 131 + LG +A + YLV ++QA + + L V ++V +L +N Sbjct: 74 AALGQHGIAYVVGVYLVLYLRLRLLQFDPFRQAAQLFPVLLAVQLVVLLGGWLAVNPPAG 133 Query: 132 PEVFWSSVVNGVLWPWIFLLMRKVR 156 + + LW L++R Sbjct: 134 LAILMPVFGSTFLWYLSALVLRLWH 158 >UniRef50_A1STZ6 Rod shape-determining protein MreD n=1 Tax=Psychromonas ingrahamii 37 RepID=A1STZ6_PSYIN Length = 133 Score = 88.7 bits (219), Expect = 6e-17, Method: Composition-based stats. Identities = 54/132 (40%), Positives = 83/132 (62%) Query: 30 NLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVA 89 L FRP+W++LI+ YW+LALPHRV++ F++G + DL+ GSTLG+ L S +AY+V Sbjct: 1 MLNAFRPDWMILIIFYWVLALPHRVSIVHAFILGVVFDLLLGSTLGMHALLFSFLAYIVI 60 Query: 90 LKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPWIF 149 YQLFR L Q L+V L SL+ + ++ + ++ FWS + ++WPW F Sbjct: 61 TNYQLFRYFTLVQTTLLVGLYSLLSKLALYLMASSLQDIILHQSYFWSVFTSMLVWPWFF 120 Query: 150 LLMRKVRQQFAV 161 L +R +R++F V Sbjct: 121 LFLRFIRRRFKV 132 >UniRef50_D0L063 Rod shape-determining protein MreD n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L063_HALNC Length = 155 Score = 87.5 bits (216), Expect = 1e-16, Method: Composition-based stats. Identities = 41/149 (27%), Positives = 73/149 (48%) Query: 11 VIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLIS 70 +I LS L+AL+L + P + P W+LL +LYW + P+ V + ++ G +LD+ S Sbjct: 7 MIPLSLLVALILTVEPSVPLYQHYSPQWLLLTVLYWCIREPNSVGLIVAWMSGLVLDVAS 66 Query: 71 GSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSF 130 LG L ++ A +V Q+ QQAL V LS + ++ W + + +++ Sbjct: 67 VGLLGANALLFTLSAAVVLGLRQMLFFTGPVQQALFVAGLSAIYLLLSLWMQGGISDLTM 126 Query: 131 RPEVFWSSVVNGVLWPWIFLLMRKVRQQF 159 N V WP I ++ +R+++ Sbjct: 127 LLHNLVRVASNLVAWPIILMVFHLLRRRY 155 >UniRef50_P44476 Rod shape-determining protein mreD n=32 Tax=Pasteurellaceae RepID=MRED_HAEIN Length = 162 Score = 87.1 bits (215), Expect = 2e-16, Method: Composition-based stats. Identities = 61/153 (39%), Positives = 102/153 (66%) Query: 10 WVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLI 69 + I F+IA +L++ PWP + +P W++L+LLYW+LA+P++V++G F++G DLI Sbjct: 10 FTILSFFVIAFVLELAPWPVGFQMLKPAWLVLVLLYWVLAIPNKVSIGWSFLLGLTWDLI 69 Query: 70 SGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVS 129 GSTLGV L +S Y++A Y + RNL+LW Q+L+V+L ++ +++F EF + Sbjct: 70 LGSTLGVHALVLSTSMYIIAKNYLILRNLSLWFQSLLVVLFVFIIRLLIFLVEFSLHTAF 129 Query: 130 FRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 F + + +G+LWPW+FLLMRK+R++ + Sbjct: 130 FHWQAILGAFASGLLWPWVFLLMRKIRRKVKLH 162 >UniRef50_Q1YU27 Rod shape-determining protein MreD n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YU27_9GAMM Length = 158 Score = 86.4 bits (213), Expect = 3e-16, Method: Composition-based stats. Identities = 32/152 (21%), Positives = 79/152 (51%) Query: 7 QGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAIL 66 + L+ ++A++L +MP + IV++PN++LL ++ W++ P V + +G + Sbjct: 5 NRGIAVCLTLILAVVLSLMPLSGDWIVWKPNFLLLTVMAWVMRWPDGVGIFFAASVGLLA 64 Query: 67 DLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVI 126 D++ + G V+ ++ A+ +AL + + L++ Q+ L+V L+ +V + Sbjct: 65 DILLRMSPGHSVIVFALCAFALALVSRWAKYLSMLQRTLLVALIISLVAMFEASLFIFYG 124 Query: 127 NVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQ 158 S + +++ + WP+I L+ +++ + Sbjct: 125 RPSGIEYLPMKILLSMLAWPFIDRLVARMQPR 156 >UniRef50_B5EMQ8 Rod shape-determining protein MreD n=3 Tax=Acidithiobacillus RepID=B5EMQ8_ACIF5 Length = 158 Score = 86.0 bits (212), Expect = 4e-16, Method: Composition-based stats. Identities = 34/152 (22%), Positives = 74/152 (48%) Query: 10 WVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLI 69 V+ L F AL+ + +P P++V L+LLYW ++ ++ +++G + D++ Sbjct: 4 VVVVLGFFFALVAEAIPCGPFYASLHPDFVALLLLYWAISSASELSFTVVWLIGLLQDMV 63 Query: 70 SGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVS 129 G LG + +A ++ YL+ R+LA W+Q + +L L ++V+ + ++ Sbjct: 64 LGDVLGAQAIAGVVMIYLLYTGIARVRSLASWEQLFFIFMLLLAHRLLVWSWQAWAGTIT 123 Query: 130 FRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAV 161 + + ++ +LWP L + +R + Sbjct: 124 WHFSLLLGPLIGALLWPLFTLTLDYLRHALRL 155 >UniRef50_Q31F49 Rod shape-determining protein MreD n=1 Tax=Thiomicrospira crunogena XCL-2 RepID=Q31F49_THICR Length = 167 Score = 84.1 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 32/153 (20%), Positives = 74/153 (48%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 S +W++ S+ I++++ M I F P + LLILL+W + ++ ++ + F +G + Sbjct: 11 SDIKWLLIFSYFISVVIDSMMILSFNINFVPYFTLLILLFWSTQILNQTHLFSAFALGLL 70 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 D + LG L I +L+ F+ LWQQ+++V ++ + ++ V Sbjct: 71 FDASMNTPLGSHSLIFVTITFLMLRSRLRFKGYPLWQQSMIVGSYFIIFQAMSWFIFHPV 130 Query: 126 INVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQ 158 + + + ++ ++WP + +M ++ + Sbjct: 131 LVGNALLYYWIEPLLAILIWPVLTQVMHRLTHR 163 >UniRef50_A5WCI6 Putative uncharacterized protein n=1 Tax=Psychrobacter sp. PRwf-1 RepID=A5WCI6_PSYWF Length = 162 Score = 82.9 bits (204), Expect = 3e-15, Method: Composition-based stats. Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 1/149 (0%) Query: 12 IWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISG 71 + SF+ A ++ I P + RP ++++L++W++ P V V T F +G I DL+ Sbjct: 15 VIASFVAASVVNIYPLSLDASKLRPMALIMVLIFWLIYKPRYVGVVTAFAIGIISDLLLD 74 Query: 72 STLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFR 131 + LG + A I+A+ + Q + + L A V +L+V + W + F Sbjct: 75 TRLGQQGFAAVIMAFSLRFVGQYIKQVNLP-VAWTVATGALIVFQLTLWIVQYLTQNIFY 133 Query: 132 PEVFWSSVVNGVLWPWIFLLMRKVRQQFA 160 +S +V+ + WP +F + + +++ Sbjct: 134 ASAIFSLLVSVISWPLVFFGLHRFINKYS 162 >UniRef50_A5IGA1 Rod shape determining protein MreD n=5 Tax=Legionella RepID=A5IGA1_LEGPC Length = 159 Score = 82.5 bits (203), Expect = 4e-15, Method: Composition-based stats. Identities = 37/138 (26%), Positives = 74/138 (53%) Query: 14 LSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGST 73 L FL+AL L I+P P+ + +FRP WVLL++LY LP + + + G +LD++ + Sbjct: 10 LGFLVALALSILPMPELISIFRPPWVLLLVLYIEYYLPGKFKLTALLIAGLLLDVLLSTV 69 Query: 74 LGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPE 133 +G A+ ++ ++ + K + + +L QQ ++ + I+ + + L+ Sbjct: 70 IGEHSFALLLVTWIASTKSRRVQFFSLIQQVCLIGFFCFLYQSIIIFIDALLGFNYNLIM 129 Query: 134 VFWSSVVNGVLWPWIFLL 151 S+++ ++WPWI +L Sbjct: 130 PVASAILGMIIWPWIRVL 147 >UniRef50_C8PVZ5 Rod shape-determining protein MreD n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PVZ5_9GAMM Length = 161 Score = 81.4 bits (200), Expect = 8e-15, Method: Composition-based stats. Identities = 34/156 (21%), Positives = 78/156 (50%), Gaps = 1/156 (0%) Query: 2 ASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFV 61 + V+ +SF+IA +L + P + +FRP W++++L++W++ P + +G FV Sbjct: 7 KKTKQHLYIVMAISFIIASVLSVYPLSAEIALFRPMWMIMMLIFWLIFQPTLIGIGLAFV 66 Query: 62 MGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWA 121 +G DL++ S +G + L ++A+ + R L+ ++ L++ + Sbjct: 67 VGLFADLLTDSRIGQQALCAVLVAFFIKFVSGYLRQLS-SNLVWLLAGACLLIYQLGLIF 125 Query: 122 EFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQ 157 L F P++ ++ V+ ++WP + +M + + Sbjct: 126 LHLFTQGVFAPQLLYTVAVSTLIWPLLVAVMLRYTR 161 >UniRef50_Q1QDJ0 Rod shape-determining protein MreD n=2 Tax=Psychrobacter RepID=Q1QDJ0_PSYCK Length = 161 Score = 81.0 bits (199), Expect = 1e-14, Method: Composition-based stats. Identities = 37/147 (25%), Positives = 73/147 (49%), Gaps = 1/147 (0%) Query: 11 VIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLIS 70 VI LSF+IA L + P ++ RP ++++L++W+L P V + + F +G I DL+ Sbjct: 16 VIVLSFIIASSLSVYPLSPSMATLRPMIMIMVLIFWLLFQPRYVGIFSAFAIGLIADLLM 75 Query: 71 GSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSF 130 + LG + + +A ++ + R L A ++ L L + W + + F Sbjct: 76 DTHLGQQAFSAVAVALMIKVTSIYIRQLNTIS-AWIIASLGLFIFQASLWMLQMFVQDVF 134 Query: 131 RPEVFWSSVVNGVLWPWIFLLMRKVRQ 157 + +S +++ + WP + L +RK + Sbjct: 135 VAQSTFSLLMSIISWPLVLLTLRKFVR 161 >UniRef50_A0L7I2 Rod shape-determining protein MreD n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L7I2_MAGSM Length = 171 Score = 80.2 bits (197), Expect = 2e-14, Method: Composition-based stats. Identities = 40/153 (26%), Positives = 70/153 (45%), Gaps = 2/153 (1%) Query: 9 RWVIWLSFLIALLLQIMPWP-DNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILD 67 W+ LS ++A+ +Q + P VFRP+ +L+ L YW L P R G+ F G +D Sbjct: 10 PWLPLLSLMLAVAVQEVALPYQAWSVFRPDLLLVALFYWRLYRPDRCGPGSAFGAGVAVD 69 Query: 68 LISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVIN 127 L+SG +G+ L+ +I L+ R ++ LLSL+ +I LV Sbjct: 70 LLSGGPMGINALSKILITLLIRRFGPRLRATDAIFLVPILALLSLLDQMIQLGLATLVQG 129 Query: 128 VSFRPEVFWSSVVN-GVLWPWIFLLMRKVRQQF 159 R + VV+ ++ P + + + + + Sbjct: 130 WGVRWPLLLGRVVSTALVAPLVVGALIHIHRIW 162 >UniRef50_Q1LU39 Rod shape-determining protein MreD n=1 Tax=Baumannia cicadellinicola str. Hc (Homalodisca coagulata) RepID=Q1LU39_BAUCH Length = 158 Score = 77.1 bits (189), Expect = 2e-13, Method: Composition-based stats. Identities = 54/156 (34%), Positives = 99/156 (63%), Gaps = 1/156 (0%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDN-LIVFRPNWVLLILLYWILALPHRVNVGTG 59 M + Q WVIWL F +++ + + + +F P+W+ L+L+YW++ +R++VG Sbjct: 1 MTRFYRQYNWVIWLFFFFIIIILPIIPCNKPINLFWPSWLNLLLIYWVMVRQNRIHVGIV 60 Query: 60 FVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVF 119 F++ I+DLI GS LG+ L +SII Y+V +K + FRN ++QQ ++++L S + IV Sbjct: 61 FLISIIVDLIRGSKLGIHPLLISIIIYIVFIKIKFFRNKNIYQQVIIIILASAIAKFIVN 120 Query: 120 WAEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKV 155 +L+++ S++ + SS+V+G+ WP + +MRK+ Sbjct: 121 ITNYLLLSNSWQTGILSSSIVDGIAWPLVLCIMRKI 156 >UniRef50_A5CW44 Rod shape-determining protein MreD n=3 Tax=Gammaproteobacteria RepID=A5CW44_VESOH Length = 156 Score = 76.7 bits (188), Expect = 2e-13, Method: Composition-based stats. Identities = 32/154 (20%), Positives = 68/154 (44%), Gaps = 1/154 (0%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M R +++ ++F AL+L ++P L+ W+LL+ +YWI+ ++ Sbjct: 1 MNVQRRPYIFLMKITFF-ALILSVIPLNKLLLGASAFWLLLLYIYWIVYFSTKLKFFIAL 59 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 ++G ++D++ G LG LA+ + ++ Q F L Q + + + S + + Sbjct: 60 ILGTLVDILHGDILGQNALALIFSSLFISNIKQSFFLSNLSTQQVYIFISSSIYLVFFLL 119 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRK 154 L +F + + +WP + L+ K Sbjct: 120 IFVLTQGFIINYYLFLAPFTSAFIWPVVQFLLSK 153 >UniRef50_B0SG26 Cell shape-determining protein n=6 Tax=Leptospira RepID=B0SG26_LEPBA Length = 171 Score = 73.7 bits (180), Expect = 2e-12, Method: Composition-based stats. Identities = 25/159 (15%), Positives = 60/159 (37%), Gaps = 10/159 (6%) Query: 9 RWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDL 68 + I + L+A L + RP+++++ ++++ L + GF G + D Sbjct: 5 KVFIIIGLLLAHFLNGSNVFELGNAIRPDFMVIFVVFFALRKGPMYGLWLGFFGGLLTDT 64 Query: 69 ISGS----------TLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIV 118 G +G+ + +I+ Y+V + + ++ L+ V +I Sbjct: 65 ALGGEIGGDNLVYYKIGLHSFSYAIVGYIVGKGLRSSYTENYISITIYILGLTFVSRLIT 124 Query: 119 FWAEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQ 157 + + + + + S+ N L P +F L + Sbjct: 125 YLLFLMFFHSNHSYSFLYVSLYNAFLGPALFFLFSWAYR 163 >UniRef50_C8PRS7 Rod shape-determining protein MreD n=1 Tax=Treponema vincentii ATCC 35580 RepID=C8PRS7_9SPIO Length = 166 Score = 65.6 bits (159), Expect = 6e-10, Method: Composition-based stats. Identities = 29/163 (17%), Positives = 64/163 (39%), Gaps = 5/163 (3%) Query: 5 RSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGA 64 R W I +FL+ + + + P+ +L++++Y L V GF G Sbjct: 2 RKVVLWTIAAAFLLGIFETAILSHIRFLPALPDLILILVVYIALHNGTVAGVTAGFFSGL 61 Query: 65 ILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFL 124 I D +S + +G+ +++ +L L Y+ + + ++ + + + I+F L Sbjct: 62 IFDFLSLAPMGLHSFVFTVLGFLYGLLYRKYNVRRFFFPFILGLSATFLKAGILFILNIL 121 Query: 125 VIN-----VSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + + N V P +F+L+ F ++ Sbjct: 122 FGQSIQVYNLLALSFWIEAAGNAVCAPLLFMLLGLFPNAFEIK 164 >UniRef50_Q73N05 Rod shape-determining protein MreD n=1 Tax=Treponema denticola RepID=Q73N05_TREDE Length = 172 Score = 63.7 bits (154), Expect = 2e-09, Method: Composition-based stats. Identities = 24/131 (18%), Positives = 52/131 (39%) Query: 5 RSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGA 64 + W F I LL + + P+ VLL ++Y ++ + GF+ G Sbjct: 2 KKVILWTSLSVFFITLLQTAIFSHISFFTVLPDLVLLTVIYIAISNGSLTGLICGFIAGL 61 Query: 65 ILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFL 124 + D +S + +G+ ++ YLV Y ++ + ++ L + +++F + L Sbjct: 62 LADFLSAAPIGLHSFIFTLTGYLVGKFYGIYNLNKVIFPCILGGLGFVFKVLLLFVLKIL 121 Query: 125 VINVSFRPEVF 135 +F Sbjct: 122 FGQNIHTYNIF 132 >UniRef50_Q9RH81 Rod shape determining protein MreD (Fragment) n=1 Tax=Pseudomonas fluorescens RepID=Q9RH81_PSEFL Length = 95 Score = 63.3 bits (153), Expect = 2e-09, Method: Composition-based stats. Identities = 31/92 (33%), Positives = 51/92 (55%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 MA+ S+ W++WL+F I +LL + P P + + RP W+ L+L +W L LPH+V + T Sbjct: 1 MANTHSRNGWIVWLTFAIGMLLSVSPLPQFMEILRPLWLALLLAFWSLNLPHKVGMVTAM 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKY 92 +G D++ G+ LG L + + L Sbjct: 61 FLGLAEDVLYGTLLGQNALITKVYSPLSMTLS 92 >UniRef50_B2S393 Rod shape-determining protein n=2 Tax=Treponema pallidum RepID=B2S393_TREPS Length = 168 Score = 52.1 bits (124), Expect = 7e-06, Method: Composition-based stats. Identities = 29/155 (18%), Positives = 63/155 (40%), Gaps = 5/155 (3%) Query: 10 WVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLI 69 W + SFL +++ + + + P+ VLL++L+ + + TGF+ G I D + Sbjct: 7 WSVGTSFLFSIVEMAVFVHVSYLSIMPDLVLLVVLFTSIHNGVVAGIWTGFIAGIIFDFL 66 Query: 70 SGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVI--- 126 S S G+ + I ++V + ++ A++ + +V + Sbjct: 67 SISPFGLHSFVFTTIGFMVGKVQGRYHIDRVFAPAVLAGFAMIFKVGLVLVLRGVFGPNI 126 Query: 127 --NVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQF 159 F +++ +N V P++F L+ F Sbjct: 127 QVYSVFSRQLWIEMTLNIVFVPFVFGLLNMFPTTF 161 >UniRef50_B1I4Q2 Putative uncharacterized protein n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I4Q2_DESAP Length = 164 Score = 50.2 bits (119), Expect = 2e-05, Method: Composition-based stats. Identities = 24/106 (22%), Positives = 50/106 (47%) Query: 35 RPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQL 94 +P+ VL++++Y+ + R GF+ G D +SG LG+ LA++ Y+V L + Sbjct: 30 KPDLVLVLVVYYAIFNGPREGAFLGFLGGLAHDFLSGYYLGLNALAVAASGYVVGLGHIR 89 Query: 95 FRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVV 140 + A + L +++V+ I + + E +W ++ Sbjct: 90 LFKENHFVVAGIAFLATILVEGIRYLLLLFLGVTILPGEAWWGLII 135 >UniRef50_Q0AWG6 Putative uncharacterized protein n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWG6_SYNWW Length = 167 Score = 48.2 bits (114), Expect = 9e-05, Method: Composition-based stats. Identities = 25/124 (20%), Positives = 48/124 (38%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 + + L F LL + + P+ VL+ ++++ L R GF+ G + Sbjct: 1 MRYLLLFLLPFTAILLQSTIFSFYGIKGTLPDLVLVFVVFFALINGARGGTIYGFLCGLL 60 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 DL G +GV L+ + AYLV + + V + + ++VF+ Sbjct: 61 EDLYLGRFIGVNALSKAFTAYLVGHFQDRVFKENILVALIAVFFSTFINSLLVFFLALFT 120 Query: 126 INVS 129 + Sbjct: 121 HDTF 124 >UniRef50_C1F7C9 Rod shape-determining protein MreD n=1 Tax=Acidobacterium capsulatum ATCC 51196 RepID=C1F7C9_ACIC5 Length = 172 Score = 45.9 bits (108), Expect = 5e-04, Method: Composition-based stats. Identities = 29/126 (23%), Positives = 58/126 (46%), Gaps = 4/126 (3%) Query: 37 NWVLLILLYWILALPHRVN-VGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLF 95 + LL+ +Y+ + + + G +G + D+ + LGV +A +II Y A Sbjct: 46 DLPLLVTIYFAITWRNPIGGTLCGAAIGILQDVPTQHPLGVYGIAKAIIGYFAASIGIRI 105 Query: 96 RNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWS---SVVNGVLWPWIFLLM 152 +L + L++ +LV IV+ E +I+ + + +VVN V+ +F L Sbjct: 106 DTESLGTRLLLIPAFTLVHGGIVWLLETHLIDQPYAWIWWLEGLHAVVNAVIGVMLFSLF 165 Query: 153 RKVRQQ 158 + R++ Sbjct: 166 DRARRR 171 >UniRef50_A4J7K3 Putative uncharacterized protein n=1 Tax=Desulfotomaculum reducens MI-1 RepID=A4J7K3_DESRM Length = 166 Score = 45.2 bits (106), Expect = 8e-04, Method: Composition-based stats. Identities = 25/135 (18%), Positives = 54/135 (40%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 + L + LL + + +P+ VL+ +++ R GF+ G Sbjct: 1 MRSIVFFLLITISLLLQSTVFTFLQVAGIKPDLVLMFVVFNGFLRGSREGAFLGFLAGLA 60 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 D+ +GS +G+ L + YLV L F ++ ++V ++ +V +I++ F + Sbjct: 61 QDIFTGSYIGLNALTKMLAGYLVGLAETRFYKESVIIVSMVTFVVGVVNQVILYLLLFYL 120 Query: 126 INVSFRPEVFWSSVV 140 F ++ Sbjct: 121 NVEISPYYAFGQVII 135 >UniRef50_D1AAV7 Rod shape-determining protein MreD n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AAV7_THECD Length = 193 Score = 43.2 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 26/150 (17%), Positives = 56/150 (37%), Gaps = 12/150 (8%) Query: 21 LLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLI--SGSTLGVRV 78 + +P P + P+ VLL ++ L + V GF G D++ + T+G Sbjct: 30 VANRLPLPGAVT---PDLVLLSVVALALTCGPLMGVVAGFGAGLAADIVPPADHTIGRYA 86 Query: 79 LAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVF--- 135 L +I YL L A+ V + +L ++ ++ + + Sbjct: 87 LVYCVIGYLCGLASDEMDRSAVV-PFFAVAVGALAGTVLYAGVGMMLGDPRADWHIVARV 145 Query: 136 --WSSVVNGVLWPWIFL-LMRKVRQQFAVQ 162 V + + P++ ++R +R+ + Sbjct: 146 VPLQVVYDVLASPFVVWAVLRAMRRYERER 175 >UniRef50_UPI0000E87A9D hypothetical protein MB2181_01455 n=1 Tax=Methylophilales bacterium HTCC2181 RepID=UPI0000E87A9D Length = 162 Score = 43.2 bits (101), Expect = 0.003, Method: Composition-based stats. Identities = 18/128 (14%), Positives = 46/128 (35%) Query: 16 FLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLG 75 FL+ LL + P P++++ + +L + + T F G I D++ G +G Sbjct: 19 FLLTLLFSQINIPFISSGSLPDYLVAWSVGVMLLNNKQYGILTIFFAGLIADILIGQIIG 78 Query: 76 VRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVF 135 + ++ ++F + Q+ + ++L +V + + Sbjct: 79 QYAFTFILTYAILFFIQKMFAIQSYKQRTITGIILVIVALLTTNITSTTYQTNFHETSIV 138 Query: 136 WSSVVNGV 143 + + Sbjct: 139 LKLITTII 146 >UniRef50_B7ANR5 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7ANR5_9BACE Length = 176 Score = 42.9 bits (100), Expect = 0.003, Method: Composition-based stats. Identities = 24/100 (24%), Positives = 40/100 (40%) Query: 36 PNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLF 95 PN++++I + + + TGFV G I DL S S +G+ +AM I Y YQ + Sbjct: 32 PNFLIIIPVLFGFLNGKTEGIYTGFVCGIIYDLFSYSIIGLSSIAMMFIGYFAGCFYQKY 91 Query: 96 RNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVF 135 +V + + + FL+ N Sbjct: 92 EEKEFLMPIAMVGAGDFIYGFLSYVVNFLLHNKLDVLYYL 131 >UniRef50_B6ITQ9 Putative uncharacterized protein n=1 Tax=Rhodospirillum centenum SW RepID=B6ITQ9_RHOCS Length = 173 Score = 42.9 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 22/126 (17%), Positives = 54/126 (42%), Gaps = 3/126 (2%) Query: 36 PNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLF 95 P +L+ ++YW + P + F++G + DL+ G+ LG+ L + AY + L + F Sbjct: 43 PPLMLMAVVYWAIHRPDLLRPTLVFLLGVLNDLLGGAPLGMTALVFVL-AYWLLLTQRRF 101 Query: 96 RNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRP--EVFWSSVVNGVLWPWIFLLMR 153 + + + + V WA + ++ + ++ ++P ++ Sbjct: 102 FLGNSFLLLWIGFTMVALGAAAVQWAVYSLMAAELLTFRAAGFQVMLATAVFPLAAWVLM 161 Query: 154 KVRQQF 159 ++ + F Sbjct: 162 RLHRAF 167 >UniRef50_B8FVF2 Rod shape-determining protein MreD n=2 Tax=Desulfitobacterium hafniense RepID=B8FVF2_DESHD Length = 169 Score = 42.9 bits (100), Expect = 0.004, Method: Composition-based stats. Identities = 26/123 (21%), Positives = 52/123 (42%), Gaps = 1/123 (0%) Query: 6 SQGRWVIWLSFLIALLL-QIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGA 64 + +I + L +L+L + + + +P+ VLL +Y L G G Sbjct: 1 MRRNILIIVMLLFSLILPGTVFYFWSWGGIKPDLVLLFTIYMALHHRTLPGALWGLGAGM 60 Query: 65 ILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFL 124 + D G G+ L ++++A L Q + + AL+V L++ V + ++ + L Sbjct: 61 LADFYLGRHFGMYALTLTVVALLSDWLSQRWYRENYFLIALLVFLVTFVGEGLIAFLNIL 120 Query: 125 VIN 127 V Sbjct: 121 VGA 123 >UniRef50_A7HW07 Rod shape-determining protein MreD n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HW07_PARL1 Length = 177 Score = 42.1 bits (98), Expect = 0.006, Method: Composition-based stats. Identities = 22/112 (19%), Positives = 45/112 (40%), Gaps = 2/112 (1%) Query: 20 LLLQIMPWPDNL-IVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRV 78 +LL +P + P + L+ + YW + P F +G I DL+SG +G+ Sbjct: 32 VLLSFVPLGRIVGSPLTPAFPLMAIYYWAIVRPEMFPPLAVFTVGLIFDLLSGGAIGLWA 91 Query: 79 LAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSF 130 ++ Y V + ++ A + + L++ + W + + F Sbjct: 92 FVY-VVTYAVVISQRMLVMNAPFSVFWIGFLVAAAFAGALAWGVVSISHGMF 142 >UniRef50_Q1IRN5 Putative uncharacterized protein n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRN5_ACIBL Length = 176 Score = 42.1 bits (98), Expect = 0.006, Method: Composition-based stats. Identities = 21/151 (13%), Positives = 60/151 (39%), Gaps = 5/151 (3%) Query: 12 IWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRV-NVGTGFVMGAILDLIS 70 I L L +P + + LL+ +Y+ ++ + + + G ++G + D ++ Sbjct: 26 IVAPLLAIFLQAFIPIKIHFFDVF-DLPLLVTIYFAMSRRNPITGLLQGSIIGLVQDSLT 84 Query: 71 GSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSF 130 +G+ +A +++ + + + + L+ + + + F ++ Sbjct: 85 RDMIGMYGIAKTLVGFAASQLGAKIDSDNPSSRFLLTLGFYIGHQSVYFLIARGMVRQPI 144 Query: 131 RPEV---FWSSVVNGVLWPWIFLLMRKVRQQ 158 +V N +L ++F +M + RQ+ Sbjct: 145 EWHWAHEMLGAVANALLAVFLFAVMDRFRQR 175 >UniRef50_C1QD51 Rod shape-determining protein MreD n=2 Tax=Brachyspira RepID=C1QD51_9SPIR Length = 180 Score = 42.1 bits (98), Expect = 0.007, Method: Composition-based stats. Identities = 20/103 (19%), Positives = 42/103 (40%), Gaps = 4/103 (3%) Query: 31 LIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVAL 90 + +P+ +L+ L++ + GF++G + D++S T G + I + V Sbjct: 29 ALGAKPDLLLIFLVFISFRYGSFDGIIYGFIIGLLQDIVSSGTFGSYAIIFLNIGFFVGF 88 Query: 91 KYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPE 133 +Q + ++LV +I A FLV ++ Sbjct: 89 FNTRI----FIKQIAAGIFVTLVGYLIKIIALFLVTSIYSDLS 127 >UniRef50_C0EWW6 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0EWW6_9FIRM Length = 171 Score = 42.1 bits (98), Expect = 0.007, Method: Composition-based stats. Identities = 20/135 (14%), Positives = 53/135 (39%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 +G L F+ +L + L PN +L+++ + + + GF G + Sbjct: 2 KRGIVTAVLVFICFILQTSVFELIKLAGITPNILLILISSVAVMRGQKPGMIVGFFSGLL 61 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 +D+ GST+G + ++ +++ + +++ + L+ I++ L+ Sbjct: 62 MDIFYGSTIGGFAFLYMVFGFVDGFFNRIYYSDDNILPLVLIGVNDLIYGFIMYILCGLL 121 Query: 126 INVSFRPEVFWSSVV 140 N + ++ Sbjct: 122 QNHLRIIYYLKNIIL 136 >UniRef50_D2BCD8 Putative uncharacterized protein n=1 Tax=Streptosporangium roseum DSM 43021 RepID=D2BCD8_STRRD Length = 176 Score = 42.1 bits (98), Expect = 0.007, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 52/148 (35%), Gaps = 12/148 (8%) Query: 21 LLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLI--SGSTLGVRV 78 ++ +P P P+ VLL ++ + L GF G D++ + LG Sbjct: 22 VVNRLPLPGEGA---PDLVLLTVVGYALVRGANAGAVMGFCAGLASDVLPPAAHVLGQHA 78 Query: 79 LAMSIIAYLVALKYQLFRNLALWQQ----ALVVMLLSLVVDIIVFWAEFLVINVSFRPEV 134 L + +I ++ ++ + Q A V + + + + + Sbjct: 79 LVLCLIGFMAG---RVVESYPDAGQLTTLACAVAGPLVAAGVGALLGDDRISRSMLTATL 135 Query: 135 FWSSVVNGVLWPWIFLLMRKVRQQFAVQ 162 + + N + P + + +V + V+ Sbjct: 136 PQAVLYNLLAAPPVVWAVTRVVRGPRVR 163 >UniRef50_B3T1Z2 Putative rod shape-determining protein MreD n=1 Tax=uncultured marine microorganism HF4000_133G03 RepID=B3T1Z2_9ZZZZ Length = 168 Score = 41.7 bits (97), Expect = 0.007, Method: Composition-based stats. Identities = 23/118 (19%), Positives = 52/118 (44%) Query: 41 LILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLAL 100 +++ YW+L P + G F+ G I D++ G +G+ L + IIA + A + +L Sbjct: 44 ILIYYWVLKQPQVLGYGFIFLSGIITDVVFGLPIGISALTLLIIASVAAYVRAVTVRPSL 103 Query: 101 WQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQ 158 + + L+ + I F + F +S+ + +P+++++ + Sbjct: 104 LYDWMSFIPALLIANFIYFIVLYFSNYSIDYLYFFKNSIFTFLFYPFLWVIFGILINF 161 >UniRef50_A8TM61 Putative uncharacterized protein n=1 Tax=alpha proteobacterium BAL199 RepID=A8TM61_9PROT Length = 169 Score = 41.7 bits (97), Expect = 0.009, Method: Composition-based stats. Identities = 22/148 (14%), Positives = 61/148 (41%), Gaps = 1/148 (0%) Query: 12 IWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISG 71 I L+ L+A+L + P + + YW + P F++G + D+++ Sbjct: 19 IALTVLLAILSVVPIGVPGYATVVPAYTAMAAFYWAVFRPDLQPPFALFLVGVLQDILAA 78 Query: 72 STLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVI-NVSF 130 + LG+ L++ ++ L + + F L +L+ + ++++ +++ Sbjct: 79 TPLGMTALSLMVVHGLALSQRRAFLGKPFALAWLGFLLIHGLSALLIWLLASMLVLQPIG 138 Query: 131 RPEVFWSSVVNGVLWPWIFLLMRKVRQQ 158 + +V L+P + + ++ + Sbjct: 139 PEPAVFQYLVTVTLFPLVAWIFVRMHRY 166 >UniRef50_A8MHM1 Putative uncharacterized protein n=1 Tax=Alkaliphilus oremlandii OhILAs RepID=A8MHM1_ALKOO Length = 165 Score = 40.9 bits (95), Expect = 0.013, Method: Composition-based stats. Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 7/130 (5%) Query: 11 VIWLSFLIALLLQIMPWPDNLIVF-----RPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 I +S ++ +L ++ L F PN +++++ + + + GF +G + Sbjct: 3 FIIISIIV--VLNLILQSTTLQWFNILGTLPNTAIILVISFAVHSGKKQGAIIGFFVGLL 60 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 D+ G +G+ LA +I Y V L Q + ++ L ++ +++ FL+ Sbjct: 61 QDITFGRIIGMNALAYMLIGYTVGLTEQKIFKGNILIPIILTGLATIFYELMNLLLIFLL 120 Query: 126 INVSFRPEVF 135 +F Sbjct: 121 GYRIELLNIF 130 >UniRef50_B4V3T9 Rod shape-determining protein n=18 Tax=Streptomyces RepID=B4V3T9_9ACTO Length = 243 Score = 40.9 bits (95), Expect = 0.014, Method: Composition-based stats. Identities = 32/151 (21%), Positives = 62/151 (41%), Gaps = 9/151 (5%) Query: 17 LIALLLQIMPWPDN-LIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLI--SGST 73 ++AL++Q+ L P+ VLL ++ L H GF G + DL + Sbjct: 14 VVALVIQVSVLGRLQLPGAVPDLVLLTVVALALVYGHVSGALIGFGAGLLADLAPPADHA 73 Query: 74 LGVRVLAMSIIAYLVALKYQ-LFRNLALWQQALVVMLLSLVVDIIVFWAEFLVI-----N 127 G L + +I YLV L R + W L V+ ++ ++ LV + Sbjct: 74 AGRYALVLCLIGYLVGLARPDSGRFRSAWGPMLTVVAAAIGSTLLYAGVGALVGDTAARH 133 Query: 128 VSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQ 158 V +F +++ + +L P+ + + ++ Sbjct: 134 VGLTGLLFTATLYDLLLAPFTVPFIMALARR 164 >UniRef50_B3E5W6 Rod shape-determining protein MreD n=1 Tax=Geobacter lovleyi SZ RepID=B3E5W6_GEOLS Length = 162 Score = 40.2 bits (93), Expect = 0.026, Method: Composition-based stats. Identities = 19/132 (14%), Positives = 52/132 (39%) Query: 13 WLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGS 72 L + LL + L +++P+ +L+++++ L P ++ + +G + D +SG Sbjct: 9 ALVLGVVLLQTSVLPQYLLSLYKPDLLLILMVFLALRAPVSTSLPAAYGLGLLKDCLSGL 68 Query: 73 TLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRP 132 LG+ + ++ ++ L V L + +I + + Sbjct: 69 YLGLNAFSFLLVYLVLKTLSDRLYVQNALLLVLTVSLSTFATMLINALLLSIFSEAAGIF 128 Query: 133 EVFWSSVVNGVL 144 ++++ +L Sbjct: 129 SSLMAALIPHLL 140 >UniRef50_C8WAG3 Rod shape-determining protein MreD n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8WAG3_ATOPD Length = 186 Score = 39.8 bits (92), Expect = 0.030, Method: Composition-based stats. Identities = 29/145 (20%), Positives = 58/145 (40%), Gaps = 2/145 (1%) Query: 2 ASYRSQGRWVIWLSFLIALLLQIMPWPD-NLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 S R++ I + +I +LQI+ P + N+ L+ L + V GF Sbjct: 3 VSDRNKNVRSITILAVICFILQIVLTPQVSFGGGVINFALIFSAAIALKYGGKTGVVCGF 62 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 V G I DL S + +G+ L + + +Y + + + + +V+L + V + Sbjct: 63 VSGLIYDLTSANPIGLMALLLVVSSYFIGQEVRDRISGNFGTSMGLVVLQTFGVTFMYQL 122 Query: 121 AEFLVI-NVSFRPEVFWSSVVNGVL 144 L+ +F + + S + Sbjct: 123 INSLIGSGGNFLEGLLFKSFPTMLF 147 >UniRef50_A5D430 Cell shape-determining protein n=1 Tax=Pelotomaculum thermopropionicum SI RepID=A5D430_PELTS Length = 163 Score = 39.8 bits (92), Expect = 0.034, Method: Composition-based stats. Identities = 25/134 (18%), Positives = 46/134 (34%), Gaps = 2/134 (1%) Query: 31 LIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVAL 90 ++ +P V+LI ++ L R GF G I DL+SGS +G+ L+ + YL Sbjct: 26 IMGIKPELVMLIAIFNGFLLGAREGAFLGFAGGVIEDLVSGSYIGLNALSCMVAGYLAGS 85 Query: 91 KYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSV--VNGVLWPWI 148 + F + + + + F + + Sbjct: 86 GGERFFKENILVSTGIAFFSAAAGLTANYLLLMHAGIYLPALHAFLRVIFPSAAYTAVLL 145 Query: 149 FLLMRKVRQQFAVQ 162 LL + + F +Q Sbjct: 146 PLLFGRALRSFQIQ 159 >UniRef50_A4U0U0 Cell shape-determining protein n=3 Tax=Magnetospirillum RepID=A4U0U0_9PROT Length = 171 Score = 39.8 bits (92), Expect = 0.035, Method: Composition-based stats. Identities = 28/150 (18%), Positives = 56/150 (37%), Gaps = 3/150 (2%) Query: 12 IWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISG 71 + ++ ++ LL I L P L+ + YW + P + + F++G + D+I G Sbjct: 19 VGVTLMLLLLTAIPTRIPGLSGIIPMLPLMGVYYWAIYRPDLLPAWSAFLIGLLYDIIGG 78 Query: 72 STLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW--AEFLVINVS 129 + LGV L + + +A + F + A L W L Sbjct: 79 TPLGVNALVL-LSVQGIAAGQRRFFLGKSFMVAWWAFGLLAAAAAGATWLLVTILYGQAL 137 Query: 130 FRPEVFWSSVVNGVLWPWIFLLMRKVRQQF 159 V + ++ L+P + + + + F Sbjct: 138 DASPVIFDYLLTMGLFPLLTWTLARTQMAF 167 >UniRef50_C0CHV5 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=C0CHV5_9FIRM Length = 176 Score = 39.8 bits (92), Expect = 0.036, Method: Composition-based stats. Identities = 17/93 (18%), Positives = 36/93 (38%) Query: 48 LALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVV 107 L + + TGF G ++DL G G+ L + Y +++ + + V Sbjct: 44 LLRGKKTGMFTGFFCGILVDLFYGPVFGLYALIYMYLGYFSGFGCKIYYDDDMKVPMCFV 103 Query: 108 MLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVV 140 + L+ + V+ +FL+ F ++ Sbjct: 104 GIGDLLYNFAVYGLQFLLRGRLGFGTYFLKIMI 136 >UniRef50_Q01ZY2 Putative uncharacterized protein n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01ZY2_SOLUE Length = 177 Score = 39.4 bits (91), Expect = 0.039, Method: Composition-based stats. Identities = 22/150 (14%), Positives = 57/150 (38%), Gaps = 3/150 (2%) Query: 12 IWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISG 71 I + L L +P + F +L+++ + I+ + G ++G D +S Sbjct: 27 IVVPLLAILFQVYVPMFFQFLRFVEMPLLVVVYFSIMQRNQITGLTIGALVGLAQDSLSD 86 Query: 72 STLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV---INV 128 S LG+ + +++ Y A + L+ + + + + Sbjct: 87 SPLGMYGIVKTLVGYFAASVGVRLDVEHSLIRLLLCFFFYIFHQFFFWVMSHALLAKLGP 146 Query: 129 SFRPEVFWSSVVNGVLWPWIFLLMRKVRQQ 158 P +V+N ++ ++F + ++R++ Sbjct: 147 FDWPGTVVQAVLNAIIGVFLFSFLDRLRER 176 >UniRef50_D1BNE8 Rod shape-determining protein MreD n=3 Tax=Veillonella RepID=D1BNE8_VEIPT Length = 164 Score = 39.4 bits (91), Expect = 0.040, Method: Composition-based stats. Identities = 21/133 (15%), Positives = 50/133 (37%) Query: 13 WLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGS 72 FLI + + + PN +L I++ L R+ + + + G + D++ + Sbjct: 8 LCGFLIYFIQAQLLPTIFHTNWLPNLILTIIVMITLFKGRRMGLISAVIGGIVHDVLISN 67 Query: 73 TLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRP 132 G+ + I+ YL++ + + +V + +L+ +I + Sbjct: 68 FFGLHLFPYVIVVYLLSAVKHRIYEERWYWSSGIVAICTLLDGVIRSFMILASGGDLHFG 127 Query: 133 EVFWSSVVNGVLW 145 W V+ + W Sbjct: 128 LYLWHMVLPVMFW 140 >UniRef50_A6TQI1 Putative uncharacterized protein n=1 Tax=Alkaliphilus metalliredigens QYMF RepID=A6TQI1_ALKMQ Length = 165 Score = 39.4 bits (91), Expect = 0.042, Method: Composition-based stats. Identities = 18/105 (17%), Positives = 45/105 (42%) Query: 36 PNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLF 95 PN L++++ + + + + GF +G + D++ +GV L + I+ Y V Q Sbjct: 31 PNTALILVIAFAIHMGKQKGAVVGFFIGILQDILFSQIIGVNALVLMIVGYFVGSMNQKI 90 Query: 96 RNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFRPEVFWSSVV 140 L ++ + ++ + I +L+ ++F ++ Sbjct: 91 MRDHLAVPFVLTVGATVFYEFISVLFLYLLRYQVTILDLFSRVLI 135 >UniRef50_C8WXL3 Rod shape-determining protein MreD n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WXL3_ALIAD Length = 173 Score = 39.4 bits (91), Expect = 0.044, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 63/156 (40%), Gaps = 10/156 (6%) Query: 13 WLSFLIALLLQIMPWP-DNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISG 71 +++ I L+LQ + + V P++VL+IL+ L + + G +G I D+ G Sbjct: 7 FVTLWIGLILQATLFEIPPMDVIHPDFVLVILVLLALFRGANLAMVFGIAIGLIQDVCYG 66 Query: 72 STLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFR 131 +G+ A + AY+ A + F L L M LS V + + L S Sbjct: 67 PFIGLNAFAYGLTAYIAAAVFSQFMQKNLAIAFLTTMGLSFVHSWLTYGFMRLFELTSDS 126 Query: 132 PEVFWSS---------VVNGVLWPWIFLLMRKVRQQ 158 + S+ VV L+P + R++ Sbjct: 127 IQYALSASLQAMIVNGVVALALYPVYRAWFTRPRRR 162 >UniRef50_C9R8K4 Rod shape-determining protein MreD n=1 Tax=Ammonifex degensii KC4 RepID=C9R8K4_AMMDK Length = 163 Score = 39.0 bits (90), Expect = 0.050, Method: Composition-based stats. Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 6/134 (4%) Query: 35 RPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVALKYQL 94 RP+ +L++ + R G V G I DL++G +G+ L + YL Sbjct: 30 RPDLLLILAAFIGFWRGPREGGLWGAVAGLICDLVTGGFVGLNALTKLLAGYLAGQAGAF 89 Query: 95 FRNLALWQQALVVMLLSLVVDIIVFWAEFLVI-----NVSFRPEVFWSSVVNGVLWPWIF 149 F + ALV ++LV +++ + + +F + + N + +F Sbjct: 90 FYRESSLTCALVTGSVTLVAELVTYLLLLFLGIRLPFKSTFVYLILPVTAYNAIAAVVLF 149 Query: 150 LLM-RKVRQQFAVQ 162 L R + ++F V+ Sbjct: 150 HLWQRLLPRRFKVR 163 >UniRef50_C4Z086 Putative uncharacterized protein n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z086_EUBE2 Length = 177 Score = 39.0 bits (90), Expect = 0.050, Method: Composition-based stats. Identities = 22/129 (17%), Positives = 44/129 (34%), Gaps = 1/129 (0%) Query: 12 IWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISG 71 + L L+ + ++ PNW++++ +++ + GF G + DL Sbjct: 8 LILILFFYLMQVSLARVISIANISPNWLIILPVFFGFFAGKNEGMFVGFFAGIMYDLFFS 67 Query: 72 STLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFR 131 G L I Y YQ + + +V++ I + FL+ Sbjct: 68 GLFGFTALVFIYIGYFSGFLYQKYEVREILIPLALVIIADFGYGFISYIGNFLL-YNRLN 126 Query: 132 PEVFWSSVV 140 F S + Sbjct: 127 VGYFMSRFI 135 >UniRef50_A3JW84 Sensor protein n=2 Tax=Rhodobacterales bacterium HTCC2150 RepID=A3JW84_9RHOB Length = 1521 Score = 39.0 bits (90), Expect = 0.052, Method: Composition-based stats. Identities = 28/170 (16%), Positives = 60/170 (35%), Gaps = 19/170 (11%) Query: 1 MASYRSQGRWVIWLSFL--IALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGT 58 M + L FL + L + + +VF +V++ L L VG Sbjct: 1 MTDNVKKIIAFFLLGFLSLVGNALNVELFFGARLVFSSVFVIIALF----TLGPWYGVGV 56 Query: 59 GFVMGAILDLISGSTLGVRVLAMSI----IAYLVALKYQLFRNLALWQQALVVMLLSLVV 114 F G ++ A I + +L RN +L A + +++ Sbjct: 57 AFFGGLYTIVLW-----QHPFAFIIYVAEAVFFAFTASRLNRNTSLI--AWDFVFWAIIG 109 Query: 115 DIIVFWAEFLVINVSFRPEVFWS--SVVNGVLWPWIFLLMRKVRQQFAVQ 162 + F + + +SF + +NG++ I L+ + +++ ++ Sbjct: 110 IPLTFVLFSIFLELSFSTIALIAFKETLNGLINVLIASLLLILGRKYFLK 159 >UniRef50_C7LYA8 Rod shape-determining protein MreD n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LYA8_ACIFD Length = 167 Score = 39.0 bits (90), Expect = 0.053, Method: Composition-based stats. Identities = 28/128 (21%), Positives = 52/128 (40%), Gaps = 5/128 (3%) Query: 31 LIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISGSTLGVRVLAMSIIAYLVAL 90 ++ P+ V+ ++ GFV G +D + G+ L ++ YL Sbjct: 29 ILGVHPDLVMAMVAAIGAVRGRESGAIAGFVGGIAVDAFLSTPFGLSALIYVVVGYLAGE 88 Query: 91 KYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFR-----PEVFWSSVVNGVLW 145 ++ L + +VV L SLV + + AEFL+ + ++ VN V+ Sbjct: 89 VERIDGGAPLAVRWIVVGLASLVGEGLFVVAEFLLGLANPLQTRLVEQILVVGGVNLVIA 148 Query: 146 PWIFLLMR 153 P + L+R Sbjct: 149 PVVLGLVR 156 >UniRef50_C8WGI8 Rod shape-determining protein MreD n=1 Tax=Eggerthella lenta DSM 2243 RepID=C8WGI8_EGGLE Length = 175 Score = 39.0 bits (90), Expect = 0.058, Method: Composition-based stats. Identities = 31/154 (20%), Positives = 66/154 (42%), Gaps = 10/154 (6%) Query: 9 RWVIWLSFLIALLLQIMPWPDNLIV-FRPNWVLLILLYWILALPHRVNVGTGFVMGAILD 67 VI + ++ALLLQI+ P+ + +PN++L +L +A P F +G + D Sbjct: 7 GIVIAVGAVVALLLQIVVAPNIALFSAQPNFLLAYVLVVAIARPLDAGSALPFALGLVCD 66 Query: 68 LISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDII---VFWAEFL 124 L+ +G I++++ + + + N L+ + ++ + +++ + L Sbjct: 67 LLGSGPVGGYAFLFVIVSFIASRAFSVLDNDTLFMPVTIFVVATFAAEMLYGALLIGLGL 126 Query: 125 VINVSFRPEV------FWSSVVNGVLWPWIFLLM 152 + + VV VL+P I L+ Sbjct: 127 SASPVDAFLYRALPCTLYDCVVGLVLYPIIARLL 160 >UniRef50_A5Z699 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z699_9FIRM Length = 177 Score = 38.6 bits (89), Expect = 0.064, Method: Composition-based stats. Identities = 22/130 (16%), Positives = 53/130 (40%), Gaps = 3/130 (2%) Query: 11 VIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLIS 70 +I +SF++ L ++ PN +L++ + TG G ++D+ Sbjct: 14 IIIVSFVLQSYLSLV---SGQSFVVPNLLLIVTSIFGFIKGSNYGSVTGLFCGLLVDVAF 70 Query: 71 GSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSF 130 G +G+ L I ++ + ++ + ++ LVV + + ++ + FL+ N Sbjct: 71 GDVIGLFALIYMYIGFISGVFKKILYSDHIFMPMLVVFVNDFLYNLAYYVFRFLLRNKLD 130 Query: 131 RPEVFWSSVV 140 F ++ Sbjct: 131 FSYYFEKVIL 140 >UniRef50_Q0AN30 Putative uncharacterized protein n=1 Tax=Maricaulis maris MCS10 RepID=Q0AN30_MARMM Length = 173 Score = 38.6 bits (89), Expect = 0.064, Method: Composition-based stats. Identities = 27/137 (19%), Positives = 52/137 (37%), Gaps = 2/137 (1%) Query: 13 WLSFLIALLLQIMPW-PDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAILDLISG 71 S L+AL++Q P + + P W L+ + W P + F +G DL++G Sbjct: 18 IASVLVALIVQASPTRLVDGLTIMPTWTLMAIFLWSGVRPQFMPPIAVFAIGLTQDLLTG 77 Query: 72 STLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLVINVSFR 131 + +GV L+ + + + + L L L+ I F A + Sbjct: 78 APMGVWALSYLVAISVFRFRGEDGMPRDLPPVLLRFGATLLLAHAIAFAAGSFALEQLAD 137 Query: 132 PEVF-WSSVVNGVLWPW 147 + V + +++P Sbjct: 138 FQPLAIEVVASILMFPL 154 >UniRef50_A1HP02 Rod shape-determining protein MreD n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HP02_9FIRM Length = 164 Score = 38.6 bits (89), Expect = 0.070, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 43/131 (32%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 + L + + + RP+ +L+I + L VG GF G I Sbjct: 1 MRTLVWSGLILITIIFQAAVIPLIGYKGVRPDLLLIIAVSTGLLFGKEQGVGVGFFAGLI 60 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 DL SG+ G+ LA Y+ L + + L + +L I+ + Sbjct: 61 QDLASGNIFGLNTLAKMATGYVAGLAERKVFKENILLPVLATVAATLFHGAIIVVLLAGL 120 Query: 126 INVSFRPEVFW 136 VF Sbjct: 121 GYKVDIAAVFI 131 >UniRef50_B7GIQ3 Cell shape-determining protein n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GIQ3_ANOFW Length = 174 Score = 38.6 bits (89), Expect = 0.071, Method: Composition-based stats. Identities = 19/138 (13%), Positives = 51/138 (36%), Gaps = 1/138 (0%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M + ++ + ++ + P +L+ +++ + + + GF Sbjct: 1 MNRLFLPFLVTVMFLLESIIVQLLSQPLFDVYLLVPRMLLVFIVFITIFIGQTEGMTYGF 60 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 + G + D+ LG A S+IAYL+A + W + ++ V+ + Sbjct: 61 IFGLLYDVAYTELLGAYAFAFSLIAYLIAKAMN-VFHKNAWTASFFAIVAIACVEWYAYA 119 Query: 121 AEFLVINVSFRPEVFWSS 138 + ++ + + F + Sbjct: 120 IQLVIGGTTMSVQTFLQA 137 >UniRef50_UPI0001C15A7A conserved hypothetical protein n=2 Tax=Nostocaceae RepID=UPI0001C15A7A Length = 212 Score = 38.6 bits (89), Expect = 0.075, Method: Composition-based stats. Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 4/124 (3%) Query: 8 GRWVIWLSFLIALLLQIM-PWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAIL 66 +I++S L+ LL+ L+ PNW L+ L+ W + P V G +MG + Sbjct: 40 NWVIIFISVLLCLLMSPTRFLGMELLGIAPNWALIWLVAWSVKRPAISGVFAGIIMGLLQ 99 Query: 67 DLISGSTLGVRVLAMSIIAYLVALKYQ-LFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 D ++ S ++++I+ L + + F AL+V ++ L+ + + F + Sbjct: 100 DALT-SPHPSHTVSLAIVGILTSRLQKHRFIQEDFISIALIVFIMVLISNTV-FVVQLFF 157 Query: 126 INVS 129 N S Sbjct: 158 TNNS 161 >UniRef50_C1XP36 Rod shape-determining protein MreD n=2 Tax=Meiothermus RepID=C1XP36_9DEIN Length = 159 Score = 38.6 bits (89), Expect = 0.079, Method: Composition-based stats. Identities = 20/136 (14%), Positives = 45/136 (33%), Gaps = 3/136 (2%) Query: 6 SQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGAI 65 + ++ +FL+ L+ + P + P+ L L + + F +G + Sbjct: 1 MRPILLLAFTFLLQSLISGL-LPGWVSP--PDLPFLATLAIAARVSPYAGLVIAFAVGLL 57 Query: 66 LDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFLV 125 +DL + G+ V+ + Y+ + F Q V+ L + + + Sbjct: 58 MDLSAAGYPGLNVVGYLLGTYVFYRLSRAFHWDEPLGQFAVLAGSLLTKWLGYLLMVYWL 117 Query: 126 INVSFRPEVFWSSVVN 141 F V+ Sbjct: 118 RGEPFGFLSITPVFVS 133 >UniRef50_C9LXR8 Rod shape-determining protein MreD n=1 Tax=Selenomonas sputigena ATCC 35185 RepID=C9LXR8_9FIRM Length = 166 Score = 38.2 bits (88), Expect = 0.084, Method: Composition-based stats. Identities = 32/149 (21%), Positives = 57/149 (38%), Gaps = 2/149 (1%) Query: 1 MASYRSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGF 60 M SYR W+ ++ L L P + N +L++ + W L R GF Sbjct: 1 MISYRRIFFWLAFVIALFVLQTSFFPV-FSWNGVSVNLMLVLTVSWSLLYGARRGAFLGF 59 Query: 61 VMGAILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFW 120 + G + DL +G G+ V A++II Y + ++ A+ M + V Sbjct: 60 MTGLLQDLTTGMFFGMDVFALTIIGYATGAFSRNVFKDPVFLPAMATMWATAAHYFFVLV 119 Query: 121 AEFLVINVSFRPEVFWSSVVNGVLWPWIF 149 L+ F +++ + W +F Sbjct: 120 LMLLLGYG-FSLLYVVKTLLPALCWNVLF 147 >UniRef50_C5RGQ5 Rod shape-determining protein MreD n=1 Tax=Clostridium cellulovorans 743B RepID=C5RGQ5_CLOCL Length = 164 Score = 38.2 bits (88), Expect = 0.096, Method: Composition-based stats. Identities = 20/154 (12%), Positives = 58/154 (37%) Query: 5 RSQGRWVIWLSFLIALLLQIMPWPDNLIVFRPNWVLLILLYWILALPHRVNVGTGFVMGA 64 + + + L + +P N+ + P+ +++ +L + + + G + G Sbjct: 2 KKIITIAVLIILLYIMDSTWVPLFINIYGYTPSLLMIFILSYSIINGSYEGIWVGAIAGI 61 Query: 65 ILDLISGSTLGVRVLAMSIIAYLVALKYQLFRNLALWQQALVVMLLSLVVDIIVFWAEFL 124 D+ T GV ++ +L + ++V + + II+ ++ Sbjct: 62 FQDVFFIHTFGVNGFINVLLCFLAGHVGKSLFRQKRAVPTILVGFFTAIKQIIIMGYLYI 121 Query: 125 VINVSFRPEVFWSSVVNGVLWPWIFLLMRKVRQQ 158 + + S+ N +L +I+ + K+ ++ Sbjct: 122 YGASANIYTIIAPSIFNLILAFFIYKWIYKLCKK 155 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.323 0.162 0.511 Lambda K H 0.267 0.0498 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 1,179,821,925 Number of Sequences: 3077464 Number of extensions: 57698819 Number of successful extensions: 413974 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 486 Number of HSP's successfully gapped in prelim test: 703 Number of HSP's that attempted gapping in prelim test: 412340 Number of HSP's gapped (non-prelim): 1613 length of query: 162 length of database: 1,040,396,356 effective HSP length: 118 effective length of query: 44 effective length of database: 677,255,604 effective search space: 29799246576 effective search space used: 29799246576 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 39 (20.8 bits) S2: 88 (38.2 bits)