BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (71 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_Q0THK2 OriC-binding nucleoid-associated protein n=114 T... 148 6e-35 UniRef50_P0ACE5 Hemolysin expression-modulating protein n=147 Ta... 54 2e-06 UniRef50_B5EWE3 Conserved domain protein n=4 Tax=Enterobacteriac... 54 2e-06 UniRef50_Q9F547 YdfA protein n=14 Tax=Enterobacteriaceae RepID=Q... 52 7e-06 UniRef50_A7FCE9 Virulence modulating protein n=7 Tax=Enterobacte... 52 8e-06 UniRef50_B5RJT3 Haemolysin expression modulating protein n=3 Tax... 49 4e-05 UniRef50_Q5JBQ4 Hha n=76 Tax=Enterobacteriaceae RepID=Q5JBQ4_ECOLX 49 4e-05 >UniRef50_Q0THK2 OriC-binding nucleoid-associated protein n=114 Tax=Enterobacteriaceae RepID=CNU_ECOL5 Length = 71 Score = 148 bits (373), Expect = 6e-35, Method: Compositional matrix adjust. Identities = 71/71 (100%), Positives = 71/71 (100%) Query: 1 MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60 MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG Sbjct: 1 MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60 Query: 61 QVPKSVWHYVQ 71 QVPKSVWHYVQ Sbjct: 61 QVPKSVWHYVQ 71 >UniRef50_P0ACE5 Hemolysin expression-modulating protein n=147 Tax=Enterobacteriaceae RepID=HHA_ECO57 Length = 72 Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 27/71 (38%), Positives = 48/71 (67%), Gaps = 4/71 (5%) Query: 1 MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60 +T DYL++ R+ ++++LE++ + Y L+D+ EL Y AADHR AEL + +L+D Sbjct: 6 LTKTDYLMRLRRCQTIDTLERVIEKNKYELSDN-ELAVFYSAADHRLAEL-TMNKLYD-- 61 Query: 61 QVPKSVWHYVQ 71 ++P SVW +++ Sbjct: 62 KIPSSVWKFIR 72 >UniRef50_B5EWE3 Conserved domain protein n=4 Tax=Enterobacteriaceae RepID=B5EWE3_SALA4 Length = 67 Score = 53.5 bits (127), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/68 (44%), Positives = 49/68 (72%), Gaps = 6/68 (8%) Query: 5 DYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYR-AADHRRAELVSGGRLFDLGQVP 63 +YLLKFR+ ++ E+LEK+ +H+ ++ +E N ++ AADHRRAEL + ++FD +VP Sbjct: 5 EYLLKFRRSNNDETLEKVVEHMEPKIS--KEDYNAFQAAADHRRAEL-ACHKIFD--KVP 59 Query: 64 KSVWHYVQ 71 KS W +V+ Sbjct: 60 KSAWKFVK 67 >UniRef50_Q9F547 YdfA protein n=14 Tax=Enterobacteriaceae RepID=Q9F547_ECOLX Length = 75 Score = 51.6 bits (122), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 2 TVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQ 61 T QD+L + R+ S+L++LEK+ + N EL + AADHR AEL + +L+D + Sbjct: 10 TKQDWLFQLRRCSTLDTLEKIIEK-NQNCLPPSELESFNAAADHRLAEL-TMNKLYD--K 65 Query: 62 VPKSVWHYV 70 VP SVW YV Sbjct: 66 VPPSVWKYV 74 >UniRef50_A7FCE9 Virulence modulating protein n=7 Tax=Enterobacteriaceae RepID=A7FCE9_YERP3 Length = 68 Score = 51.6 bits (122), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 26/71 (36%), Positives = 47/71 (66%), Gaps = 4/71 (5%) Query: 1 MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60 M ++L++ R+ +++E+LE++ + YTL+ D EL AADHR AEL + +L+D Sbjct: 2 MNKTEWLMRLRRCTTMETLEQIIERKKYTLSAD-ELETFNSAADHRLAEL-TMNKLYD-- 57 Query: 61 QVPKSVWHYVQ 71 ++P SVW +++ Sbjct: 58 KIPASVWQHIK 68 >UniRef50_B5RJT3 Haemolysin expression modulating protein n=3 Tax=Klebsiella pneumoniae RepID=B5RJT3_KLEP3 Length = 84 Score = 49.3 bits (116), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 7/71 (9%) Query: 4 QDYLLKFRKISSLESLEKLY----DHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDL 59 + YLLKFRK S+ E+L+K++ D LN D ++ ++ A DHRRAE+ +++D Sbjct: 13 ETYLLKFRKCSTTETLDKVFERILDKLNDEGGDINKITSLNGAYDHRRAEIYM-KKIYD- 70 Query: 60 GQVPKSVWHYV 70 ++P SVWH + Sbjct: 71 -KIPASVWHLI 80 >UniRef50_Q5JBQ4 Hha n=76 Tax=Enterobacteriaceae RepID=Q5JBQ4_ECOLX Length = 69 Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 28/71 (39%), Positives = 48/71 (67%), Gaps = 6/71 (8%) Query: 2 TVQDYLLKFRKISSLESLEKL-YDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60 T Q++L + R+ SS+ +LEK+ + + + L ++E N AADHR AEL++ G+L+D Sbjct: 4 TKQEWLYQLRRCSSVNTLEKIIHKNRDSLLNSERESFNS--AADHRLAELIT-GKLYD-- 58 Query: 61 QVPKSVWHYVQ 71 ++PK +W YV+ Sbjct: 59 RIPKEIWKYVR 69 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q0THK2 OriC-binding nucleoid-associated protein n=114 T... 105 3e-22 UniRef50_Q9F547 YdfA protein n=14 Tax=Enterobacteriaceae RepID=Q... 91 1e-17 UniRef50_P0ACE5 Hemolysin expression-modulating protein n=147 Ta... 84 1e-15 UniRef50_A7FCE9 Virulence modulating protein n=7 Tax=Enterobacte... 83 3e-15 UniRef50_B5RJT3 Haemolysin expression modulating protein n=3 Tax... 78 7e-14 UniRef50_Q5JBQ4 Hha n=76 Tax=Enterobacteriaceae RepID=Q5JBQ4_ECOLX 76 3e-13 UniRef50_B5EWE3 Conserved domain protein n=4 Tax=Enterobacteriac... 71 9e-12 Sequences not found previously or not previously below threshold: UniRef50_B0EYN1 Hemolysin expression modulating protein n=13 Tax... 60 2e-08 UniRef50_Q326W4 Putative regulator n=1 Tax=Shigella dysenteriae ... 54 2e-06 UniRef50_B2U682 Conserved domain protein n=1 Tax=Escherichia col... 41 0.009 UniRef50_Q47498 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID... 39 0.052 >UniRef50_Q0THK2 OriC-binding nucleoid-associated protein n=114 Tax=Enterobacteriaceae RepID=CNU_ECOL5 Length = 71 Score = 105 bits (263), Expect = 3e-22, Method: Composition-based stats. Identities = 71/71 (100%), Positives = 71/71 (100%) Query: 1 MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60 MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG Sbjct: 1 MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60 Query: 61 QVPKSVWHYVQ 71 QVPKSVWHYVQ Sbjct: 61 QVPKSVWHYVQ 71 >UniRef50_Q9F547 YdfA protein n=14 Tax=Enterobacteriaceae RepID=Q9F547_ECOLX Length = 75 Score = 91.0 bits (224), Expect = 1e-17, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 2 TVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQ 61 T QD+L + R+ S+L++LEK+ + N EL + AADHR AEL + +L+D + Sbjct: 10 TKQDWLFQLRRCSTLDTLEKIIEK-NQNCLPPSELESFNAAADHRLAEL-TMNKLYD--K 65 Query: 62 VPKSVWHYV 70 VP SVW YV Sbjct: 66 VPPSVWKYV 74 >UniRef50_P0ACE5 Hemolysin expression-modulating protein n=147 Tax=Enterobacteriaceae RepID=HHA_ECO57 Length = 72 Score = 84.4 bits (207), Expect = 1e-15, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 47/71 (66%), Gaps = 4/71 (5%) Query: 1 MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60 +T DYL++ R+ ++++LE++ + Y L+D EL Y AADHR AEL + +L+D Sbjct: 6 LTKTDYLMRLRRCQTIDTLERVIEKNKYELSD-NELAVFYSAADHRLAEL-TMNKLYD-- 61 Query: 61 QVPKSVWHYVQ 71 ++P SVW +++ Sbjct: 62 KIPSSVWKFIR 72 >UniRef50_A7FCE9 Virulence modulating protein n=7 Tax=Enterobacteriaceae RepID=A7FCE9_YERP3 Length = 68 Score = 82.9 bits (203), Expect = 3e-15, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 47/71 (66%), Gaps = 4/71 (5%) Query: 1 MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60 M ++L++ R+ +++E+LE++ + YTL+ D EL AADHR AEL + +L+D Sbjct: 2 MNKTEWLMRLRRCTTMETLEQIIERKKYTLSAD-ELETFNSAADHRLAEL-TMNKLYD-- 57 Query: 61 QVPKSVWHYVQ 71 ++P SVW +++ Sbjct: 58 KIPASVWQHIK 68 >UniRef50_B5RJT3 Haemolysin expression modulating protein n=3 Tax=Klebsiella pneumoniae RepID=B5RJT3_KLEP3 Length = 84 Score = 78.3 bits (191), Expect = 7e-14, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 7/72 (9%) Query: 3 VQDYLLKFRKISSLESLEKLYD----HLNYTLTDDQELINMYRAADHRRAELVSGGRLFD 58 + YLLKFRK S+ E+L+K+++ LN D ++ ++ A DHRRAE+ +++D Sbjct: 12 RETYLLKFRKCSTTETLDKVFERILDKLNDEGGDINKITSLNGAYDHRRAEIY-MKKIYD 70 Query: 59 LGQVPKSVWHYV 70 ++P SVWH + Sbjct: 71 --KIPASVWHLI 80 >UniRef50_Q5JBQ4 Hha n=76 Tax=Enterobacteriaceae RepID=Q5JBQ4_ECOLX Length = 69 Score = 75.9 bits (185), Expect = 3e-13, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 4/70 (5%) Query: 2 TVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQ 61 T Q++L + R+ SS+ +LEK+ +L + E + AADHR AEL++ G+L+D + Sbjct: 4 TKQEWLYQLRRCSSVNTLEKIIHKNRDSLL-NSERESFNSAADHRLAELIT-GKLYD--R 59 Query: 62 VPKSVWHYVQ 71 +PK +W YV+ Sbjct: 60 IPKEIWKYVR 69 >UniRef50_B5EWE3 Conserved domain protein n=4 Tax=Enterobacteriaceae RepID=B5EWE3_SALA4 Length = 67 Score = 71.3 bits (173), Expect = 9e-12, Method: Composition-based stats. Identities = 31/72 (43%), Positives = 50/72 (69%), Gaps = 6/72 (8%) Query: 1 MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYR-AADHRRAELVSGGRLFDL 59 M +YLLKFR+ ++ E+LEK+ +H+ ++ +E N ++ AADHRRAEL + ++FD Sbjct: 1 MDKLEYLLKFRRSNNDETLEKVVEHMEPKIS--KEDYNAFQAAADHRRAEL-ACHKIFD- 56 Query: 60 GQVPKSVWHYVQ 71 +VPKS W +V+ Sbjct: 57 -KVPKSAWKFVK 67 >UniRef50_B0EYN1 Hemolysin expression modulating protein n=13 Tax=Enterobacteriaceae RepID=B0EYN1_ECOLX Length = 71 Score = 59.8 bits (143), Expect = 2e-08, Method: Composition-based stats. Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 4/53 (7%) Query: 19 LEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQVPKSVWHYVQ 71 LEK+ + Y L E Y AADHRRAELV +L+D +VP VW YV+ Sbjct: 23 LEKVIEINRYKL-PLSESEAFYSAADHRRAELV-MNKLYD--KVPSGVWKYVR 71 >UniRef50_Q326W4 Putative regulator n=1 Tax=Shigella dysenteriae Sd197 RepID=Q326W4_SHIDS Length = 62 Score = 53.6 bits (127), Expect = 2e-06, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 4/51 (7%) Query: 21 KLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQVPKSVWHYVQ 71 K+ +L+ + E + AADHR AEL++ G+L+D ++PK +W YV+ Sbjct: 16 KIIHKNRDSLS-NSERESFNSAADHRLAELIT-GKLYD--RIPKEIWKYVR 62 >UniRef50_B2U682 Conserved domain protein n=1 Tax=Escherichia coli 53638 RepID=B2U682_ECOLX Length = 39 Score = 41.3 bits (95), Expect = 0.009, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 19/30 (63%) Query: 2 TVQDYLLKFRKISSLESLEKLYDHLNYTLT 31 T Q++L + R+ SS+ +LEK+ +L+ Sbjct: 4 TKQEWLYQLRRCSSVNTLEKIIHKNRDSLS 33 >UniRef50_Q47498 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID=Q47498_ECOLX Length = 70 Score = 39.0 bits (89), Expect = 0.052, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 TVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQ 61 + +D+L R+ + +SL+ D L E + + AA+HRR E+ + G+LFD + Sbjct: 8 SAEDWLHTVRRFMNEDSLDTYVDSKRDVL-PATEFMRLLTAAEHRRVEIRT-GKLFD--K 63 Query: 62 VPKSVWH 68 +PK ++ Sbjct: 64 IPKGLFR 70 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q0THK2 OriC-binding nucleoid-associated protein n=114 T... 103 2e-21 UniRef50_Q9F547 YdfA protein n=14 Tax=Enterobacteriaceae RepID=Q... 93 2e-18 UniRef50_P0ACE5 Hemolysin expression-modulating protein n=147 Ta... 86 3e-16 UniRef50_A7FCE9 Virulence modulating protein n=7 Tax=Enterobacte... 84 1e-15 UniRef50_Q5JBQ4 Hha n=76 Tax=Enterobacteriaceae RepID=Q5JBQ4_ECOLX 84 2e-15 UniRef50_B5RJT3 Haemolysin expression modulating protein n=3 Tax... 79 4e-14 UniRef50_B5EWE3 Conserved domain protein n=4 Tax=Enterobacteriac... 72 4e-12 UniRef50_B0EYN1 Hemolysin expression modulating protein n=13 Tax... 69 3e-11 UniRef50_Q326W4 Putative regulator n=1 Tax=Shigella dysenteriae ... 62 4e-09 Sequences not found previously or not previously below threshold: UniRef50_B2U682 Conserved domain protein n=1 Tax=Escherichia col... 45 6e-04 UniRef50_Q47498 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID... 40 0.023 >UniRef50_Q0THK2 OriC-binding nucleoid-associated protein n=114 Tax=Enterobacteriaceae RepID=CNU_ECOL5 Length = 71 Score = 103 bits (257), Expect = 2e-21, Method: Composition-based stats. Identities = 71/71 (100%), Positives = 71/71 (100%) Query: 1 MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60 MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG Sbjct: 1 MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60 Query: 61 QVPKSVWHYVQ 71 QVPKSVWHYVQ Sbjct: 61 QVPKSVWHYVQ 71 >UniRef50_Q9F547 YdfA protein n=14 Tax=Enterobacteriaceae RepID=Q9F547_ECOLX Length = 75 Score = 93.3 bits (230), Expect = 2e-18, Method: Composition-based stats. Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%) Query: 2 TVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQ 61 T QD+L + R+ S+L++LEK+ + N EL + AADHR AEL + +L+D + Sbjct: 10 TKQDWLFQLRRCSTLDTLEKIIEK-NQNCLPPSELESFNAAADHRLAEL-TMNKLYD--K 65 Query: 62 VPKSVWHYV 70 VP SVW YV Sbjct: 66 VPPSVWKYV 74 >UniRef50_P0ACE5 Hemolysin expression-modulating protein n=147 Tax=Enterobacteriaceae RepID=HHA_ECO57 Length = 72 Score = 86.3 bits (212), Expect = 3e-16, Method: Composition-based stats. Identities = 27/71 (38%), Positives = 47/71 (66%), Gaps = 4/71 (5%) Query: 1 MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60 +T DYL++ R+ ++++LE++ + Y L+D EL Y AADHR AEL + +L+D Sbjct: 6 LTKTDYLMRLRRCQTIDTLERVIEKNKYELSD-NELAVFYSAADHRLAEL-TMNKLYD-- 61 Query: 61 QVPKSVWHYVQ 71 ++P SVW +++ Sbjct: 62 KIPSSVWKFIR 72 >UniRef50_A7FCE9 Virulence modulating protein n=7 Tax=Enterobacteriaceae RepID=A7FCE9_YERP3 Length = 68 Score = 84.0 bits (206), Expect = 1e-15, Method: Composition-based stats. Identities = 26/71 (36%), Positives = 47/71 (66%), Gaps = 4/71 (5%) Query: 1 MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60 M ++L++ R+ +++E+LE++ + YTL+ D EL AADHR AEL + +L+D Sbjct: 2 MNKTEWLMRLRRCTTMETLEQIIERKKYTLSAD-ELETFNSAADHRLAEL-TMNKLYD-- 57 Query: 61 QVPKSVWHYVQ 71 ++P SVW +++ Sbjct: 58 KIPASVWQHIK 68 >UniRef50_Q5JBQ4 Hha n=76 Tax=Enterobacteriaceae RepID=Q5JBQ4_ECOLX Length = 69 Score = 83.7 bits (205), Expect = 2e-15, Method: Composition-based stats. Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 4/70 (5%) Query: 2 TVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQ 61 T Q++L + R+ SS+ +LEK+ +L + E + AADHR AEL++ G+L+D + Sbjct: 4 TKQEWLYQLRRCSSVNTLEKIIHKNRDSLL-NSERESFNSAADHRLAELIT-GKLYD--R 59 Query: 62 VPKSVWHYVQ 71 +PK +W YV+ Sbjct: 60 IPKEIWKYVR 69 >UniRef50_B5RJT3 Haemolysin expression modulating protein n=3 Tax=Klebsiella pneumoniae RepID=B5RJT3_KLEP3 Length = 84 Score = 79.0 bits (193), Expect = 4e-14, Method: Composition-based stats. Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 7/72 (9%) Query: 3 VQDYLLKFRKISSLESLEKLYD----HLNYTLTDDQELINMYRAADHRRAELVSGGRLFD 58 + YLLKFRK S+ E+L+K+++ LN D ++ ++ A DHRRAE+ +++D Sbjct: 12 RETYLLKFRKCSTTETLDKVFERILDKLNDEGGDINKITSLNGAYDHRRAEIY-MKKIYD 70 Query: 59 LGQVPKSVWHYV 70 ++P SVWH + Sbjct: 71 --KIPASVWHLI 80 >UniRef50_B5EWE3 Conserved domain protein n=4 Tax=Enterobacteriaceae RepID=B5EWE3_SALA4 Length = 67 Score = 72.5 bits (176), Expect = 4e-12, Method: Composition-based stats. Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 4/71 (5%) Query: 1 MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60 M +YLLKFR+ ++ E+LEK+ +H+ ++ ++ AADHRRAEL + ++FD Sbjct: 1 MDKLEYLLKFRRSNNDETLEKVVEHMEPKISK-EDYNAFQAAADHRRAEL-ACHKIFD-- 56 Query: 61 QVPKSVWHYVQ 71 +VPKS W +V+ Sbjct: 57 KVPKSAWKFVK 67 >UniRef50_B0EYN1 Hemolysin expression modulating protein n=13 Tax=Enterobacteriaceae RepID=B0EYN1_ECOLX Length = 71 Score = 69.4 bits (168), Expect = 3e-11, Method: Composition-based stats. Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 4/53 (7%) Query: 19 LEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQVPKSVWHYVQ 71 LEK+ + Y L E Y AADHRRAELV +L+D +VP VW YV+ Sbjct: 23 LEKVIEINRYKL-PLSESEAFYSAADHRRAELV-MNKLYD--KVPSGVWKYVR 71 >UniRef50_Q326W4 Putative regulator n=1 Tax=Shigella dysenteriae Sd197 RepID=Q326W4_SHIDS Length = 62 Score = 62.5 bits (150), Expect = 4e-09, Method: Composition-based stats. Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 4/51 (7%) Query: 21 KLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQVPKSVWHYVQ 71 K+ +L+ + E + AADHR AEL++ G+L+D ++PK +W YV+ Sbjct: 16 KIIHKNRDSLS-NSERESFNSAADHRLAELIT-GKLYD--RIPKEIWKYVR 62 >UniRef50_B2U682 Conserved domain protein n=1 Tax=Escherichia coli 53638 RepID=B2U682_ECOLX Length = 39 Score = 45.1 bits (105), Expect = 6e-04, Method: Composition-based stats. Identities = 10/30 (33%), Positives = 19/30 (63%) Query: 2 TVQDYLLKFRKISSLESLEKLYDHLNYTLT 31 T Q++L + R+ SS+ +LEK+ +L+ Sbjct: 4 TKQEWLYQLRRCSSVNTLEKIIHKNRDSLS 33 >UniRef50_Q47498 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID=Q47498_ECOLX Length = 70 Score = 40.1 bits (92), Expect = 0.023, Method: Composition-based stats. Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%) Query: 2 TVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQ 61 + +D+L R+ + +SL+ D L E + + AA+HRR E+ + G+LFD + Sbjct: 8 SAEDWLHTVRRFMNEDSLDTYVDSKRDVL-PATEFMRLLTAAEHRRVEIRT-GKLFD--K 63 Query: 62 VPKSVWH 68 +PK ++ Sbjct: 64 IPKGLFR 70 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.308 0.127 0.344 Lambda K H 0.267 0.0389 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 355,912,924 Number of Sequences: 3077464 Number of extensions: 8124572 Number of successful extensions: 30009 Number of sequences better than 1.0e-01: 11 Number of HSP's better than 0.1 without gapping: 18 Number of HSP's successfully gapped in prelim test: 11 Number of HSP's that attempted gapping in prelim test: 29954 Number of HSP's gapped (non-prelim): 29 length of query: 71 length of database: 1,040,396,356 effective HSP length: 43 effective length of query: 28 effective length of database: 908,065,404 effective search space: 25425831312 effective search space used: 25425831312 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 87 (38.2 bits)