BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= batch____
         (71 letters)

Database: uniref50.fasta 
           3,077,464 sequences; 1,040,396,356 total letters

Searching..................................................done


Results from round 1


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q0THK2 OriC-binding nucleoid-associated protein n=114 T...   148   6e-35
UniRef50_P0ACE5 Hemolysin expression-modulating protein n=147 Ta...    54   2e-06
UniRef50_B5EWE3 Conserved domain protein n=4 Tax=Enterobacteriac...    54   2e-06
UniRef50_Q9F547 YdfA protein n=14 Tax=Enterobacteriaceae RepID=Q...    52   7e-06
UniRef50_A7FCE9 Virulence modulating protein n=7 Tax=Enterobacte...    52   8e-06
UniRef50_B5RJT3 Haemolysin expression modulating protein n=3 Tax...    49   4e-05
UniRef50_Q5JBQ4 Hha n=76 Tax=Enterobacteriaceae RepID=Q5JBQ4_ECOLX     49   4e-05

>UniRef50_Q0THK2 OriC-binding nucleoid-associated protein n=114
          Tax=Enterobacteriaceae RepID=CNU_ECOL5
          Length = 71

 Score =  148 bits (373), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 71/71 (100%), Positives = 71/71 (100%)

Query: 1  MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60
          MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG
Sbjct: 1  MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60

Query: 61 QVPKSVWHYVQ 71
          QVPKSVWHYVQ
Sbjct: 61 QVPKSVWHYVQ 71


>UniRef50_P0ACE5 Hemolysin expression-modulating protein n=147
          Tax=Enterobacteriaceae RepID=HHA_ECO57
          Length = 72

 Score = 53.9 bits (128), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 48/71 (67%), Gaps = 4/71 (5%)

Query: 1  MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60
          +T  DYL++ R+  ++++LE++ +   Y L+D+ EL   Y AADHR AEL +  +L+D  
Sbjct: 6  LTKTDYLMRLRRCQTIDTLERVIEKNKYELSDN-ELAVFYSAADHRLAEL-TMNKLYD-- 61

Query: 61 QVPKSVWHYVQ 71
          ++P SVW +++
Sbjct: 62 KIPSSVWKFIR 72


>UniRef50_B5EWE3 Conserved domain protein n=4 Tax=Enterobacteriaceae
          RepID=B5EWE3_SALA4
          Length = 67

 Score = 53.5 bits (127), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 49/68 (72%), Gaps = 6/68 (8%)

Query: 5  DYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYR-AADHRRAELVSGGRLFDLGQVP 63
          +YLLKFR+ ++ E+LEK+ +H+   ++  +E  N ++ AADHRRAEL +  ++FD  +VP
Sbjct: 5  EYLLKFRRSNNDETLEKVVEHMEPKIS--KEDYNAFQAAADHRRAEL-ACHKIFD--KVP 59

Query: 64 KSVWHYVQ 71
          KS W +V+
Sbjct: 60 KSAWKFVK 67


>UniRef50_Q9F547 YdfA protein n=14 Tax=Enterobacteriaceae RepID=Q9F547_ECOLX
          Length = 75

 Score = 51.6 bits (122), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 2  TVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQ 61
          T QD+L + R+ S+L++LEK+ +  N       EL +   AADHR AEL +  +L+D  +
Sbjct: 10 TKQDWLFQLRRCSTLDTLEKIIEK-NQNCLPPSELESFNAAADHRLAEL-TMNKLYD--K 65

Query: 62 VPKSVWHYV 70
          VP SVW YV
Sbjct: 66 VPPSVWKYV 74


>UniRef50_A7FCE9 Virulence modulating protein n=7 Tax=Enterobacteriaceae
          RepID=A7FCE9_YERP3
          Length = 68

 Score = 51.6 bits (122), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 1  MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60
          M   ++L++ R+ +++E+LE++ +   YTL+ D EL     AADHR AEL +  +L+D  
Sbjct: 2  MNKTEWLMRLRRCTTMETLEQIIERKKYTLSAD-ELETFNSAADHRLAEL-TMNKLYD-- 57

Query: 61 QVPKSVWHYVQ 71
          ++P SVW +++
Sbjct: 58 KIPASVWQHIK 68


>UniRef50_B5RJT3 Haemolysin expression modulating protein n=3 Tax=Klebsiella
          pneumoniae RepID=B5RJT3_KLEP3
          Length = 84

 Score = 49.3 bits (116), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 45/71 (63%), Gaps = 7/71 (9%)

Query: 4  QDYLLKFRKISSLESLEKLY----DHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDL 59
          + YLLKFRK S+ E+L+K++    D LN    D  ++ ++  A DHRRAE+    +++D 
Sbjct: 13 ETYLLKFRKCSTTETLDKVFERILDKLNDEGGDINKITSLNGAYDHRRAEIYM-KKIYD- 70

Query: 60 GQVPKSVWHYV 70
           ++P SVWH +
Sbjct: 71 -KIPASVWHLI 80


>UniRef50_Q5JBQ4 Hha n=76 Tax=Enterobacteriaceae RepID=Q5JBQ4_ECOLX
          Length = 69

 Score = 48.9 bits (115), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 28/71 (39%), Positives = 48/71 (67%), Gaps = 6/71 (8%)

Query: 2  TVQDYLLKFRKISSLESLEKL-YDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60
          T Q++L + R+ SS+ +LEK+ + + +  L  ++E  N   AADHR AEL++ G+L+D  
Sbjct: 4  TKQEWLYQLRRCSSVNTLEKIIHKNRDSLLNSERESFNS--AADHRLAELIT-GKLYD-- 58

Query: 61 QVPKSVWHYVQ 71
          ++PK +W YV+
Sbjct: 59 RIPKEIWKYVR 69


Searching..................................................done


Results from round 2


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_Q0THK2 OriC-binding nucleoid-associated protein n=114 T...   105   3e-22
UniRef50_Q9F547 YdfA protein n=14 Tax=Enterobacteriaceae RepID=Q...    91   1e-17
UniRef50_P0ACE5 Hemolysin expression-modulating protein n=147 Ta...    84   1e-15
UniRef50_A7FCE9 Virulence modulating protein n=7 Tax=Enterobacte...    83   3e-15
UniRef50_B5RJT3 Haemolysin expression modulating protein n=3 Tax...    78   7e-14
UniRef50_Q5JBQ4 Hha n=76 Tax=Enterobacteriaceae RepID=Q5JBQ4_ECOLX     76   3e-13
UniRef50_B5EWE3 Conserved domain protein n=4 Tax=Enterobacteriac...    71   9e-12

Sequences not found previously or not previously below threshold:

UniRef50_B0EYN1 Hemolysin expression modulating protein n=13 Tax...    60   2e-08
UniRef50_Q326W4 Putative regulator n=1 Tax=Shigella dysenteriae ...    54   2e-06
UniRef50_B2U682 Conserved domain protein n=1 Tax=Escherichia col...    41   0.009
UniRef50_Q47498 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID...    39   0.052

>UniRef50_Q0THK2 OriC-binding nucleoid-associated protein n=114
          Tax=Enterobacteriaceae RepID=CNU_ECOL5
          Length = 71

 Score =  105 bits (263), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 71/71 (100%), Positives = 71/71 (100%)

Query: 1  MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60
          MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG
Sbjct: 1  MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60

Query: 61 QVPKSVWHYVQ 71
          QVPKSVWHYVQ
Sbjct: 61 QVPKSVWHYVQ 71


>UniRef50_Q9F547 YdfA protein n=14 Tax=Enterobacteriaceae RepID=Q9F547_ECOLX
          Length = 75

 Score = 91.0 bits (224), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 2  TVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQ 61
          T QD+L + R+ S+L++LEK+ +  N       EL +   AADHR AEL +  +L+D  +
Sbjct: 10 TKQDWLFQLRRCSTLDTLEKIIEK-NQNCLPPSELESFNAAADHRLAEL-TMNKLYD--K 65

Query: 62 VPKSVWHYV 70
          VP SVW YV
Sbjct: 66 VPPSVWKYV 74


>UniRef50_P0ACE5 Hemolysin expression-modulating protein n=147
          Tax=Enterobacteriaceae RepID=HHA_ECO57
          Length = 72

 Score = 84.4 bits (207), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 1  MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60
          +T  DYL++ R+  ++++LE++ +   Y L+D  EL   Y AADHR AEL +  +L+D  
Sbjct: 6  LTKTDYLMRLRRCQTIDTLERVIEKNKYELSD-NELAVFYSAADHRLAEL-TMNKLYD-- 61

Query: 61 QVPKSVWHYVQ 71
          ++P SVW +++
Sbjct: 62 KIPSSVWKFIR 72


>UniRef50_A7FCE9 Virulence modulating protein n=7 Tax=Enterobacteriaceae
          RepID=A7FCE9_YERP3
          Length = 68

 Score = 82.9 bits (203), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 1  MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60
          M   ++L++ R+ +++E+LE++ +   YTL+ D EL     AADHR AEL +  +L+D  
Sbjct: 2  MNKTEWLMRLRRCTTMETLEQIIERKKYTLSAD-ELETFNSAADHRLAEL-TMNKLYD-- 57

Query: 61 QVPKSVWHYVQ 71
          ++P SVW +++
Sbjct: 58 KIPASVWQHIK 68


>UniRef50_B5RJT3 Haemolysin expression modulating protein n=3 Tax=Klebsiella
          pneumoniae RepID=B5RJT3_KLEP3
          Length = 84

 Score = 78.3 bits (191), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 7/72 (9%)

Query: 3  VQDYLLKFRKISSLESLEKLYD----HLNYTLTDDQELINMYRAADHRRAELVSGGRLFD 58
           + YLLKFRK S+ E+L+K+++     LN    D  ++ ++  A DHRRAE+    +++D
Sbjct: 12 RETYLLKFRKCSTTETLDKVFERILDKLNDEGGDINKITSLNGAYDHRRAEIY-MKKIYD 70

Query: 59 LGQVPKSVWHYV 70
            ++P SVWH +
Sbjct: 71 --KIPASVWHLI 80


>UniRef50_Q5JBQ4 Hha n=76 Tax=Enterobacteriaceae RepID=Q5JBQ4_ECOLX
          Length = 69

 Score = 75.9 bits (185), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 2  TVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQ 61
          T Q++L + R+ SS+ +LEK+      +L  + E  +   AADHR AEL++ G+L+D  +
Sbjct: 4  TKQEWLYQLRRCSSVNTLEKIIHKNRDSLL-NSERESFNSAADHRLAELIT-GKLYD--R 59

Query: 62 VPKSVWHYVQ 71
          +PK +W YV+
Sbjct: 60 IPKEIWKYVR 69


>UniRef50_B5EWE3 Conserved domain protein n=4 Tax=Enterobacteriaceae
          RepID=B5EWE3_SALA4
          Length = 67

 Score = 71.3 bits (173), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 31/72 (43%), Positives = 50/72 (69%), Gaps = 6/72 (8%)

Query: 1  MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYR-AADHRRAELVSGGRLFDL 59
          M   +YLLKFR+ ++ E+LEK+ +H+   ++  +E  N ++ AADHRRAEL +  ++FD 
Sbjct: 1  MDKLEYLLKFRRSNNDETLEKVVEHMEPKIS--KEDYNAFQAAADHRRAEL-ACHKIFD- 56

Query: 60 GQVPKSVWHYVQ 71
           +VPKS W +V+
Sbjct: 57 -KVPKSAWKFVK 67


>UniRef50_B0EYN1 Hemolysin expression modulating protein n=13
          Tax=Enterobacteriaceae RepID=B0EYN1_ECOLX
          Length = 71

 Score = 59.8 bits (143), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 19 LEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQVPKSVWHYVQ 71
          LEK+ +   Y L    E    Y AADHRRAELV   +L+D  +VP  VW YV+
Sbjct: 23 LEKVIEINRYKL-PLSESEAFYSAADHRRAELV-MNKLYD--KVPSGVWKYVR 71


>UniRef50_Q326W4 Putative regulator n=1 Tax=Shigella dysenteriae Sd197
          RepID=Q326W4_SHIDS
          Length = 62

 Score = 53.6 bits (127), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 4/51 (7%)

Query: 21 KLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQVPKSVWHYVQ 71
          K+      +L+ + E  +   AADHR AEL++ G+L+D  ++PK +W YV+
Sbjct: 16 KIIHKNRDSLS-NSERESFNSAADHRLAELIT-GKLYD--RIPKEIWKYVR 62


>UniRef50_B2U682 Conserved domain protein n=1 Tax=Escherichia coli 53638
          RepID=B2U682_ECOLX
          Length = 39

 Score = 41.3 bits (95), Expect = 0.009,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 2  TVQDYLLKFRKISSLESLEKLYDHLNYTLT 31
          T Q++L + R+ SS+ +LEK+      +L+
Sbjct: 4  TKQEWLYQLRRCSSVNTLEKIIHKNRDSLS 33


>UniRef50_Q47498 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID=Q47498_ECOLX
          Length = 70

 Score = 39.0 bits (89), Expect = 0.052,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2  TVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQ 61
          + +D+L   R+  + +SL+   D     L    E + +  AA+HRR E+ + G+LFD  +
Sbjct: 8  SAEDWLHTVRRFMNEDSLDTYVDSKRDVL-PATEFMRLLTAAEHRRVEIRT-GKLFD--K 63

Query: 62 VPKSVWH 68
          +PK ++ 
Sbjct: 64 IPKGLFR 70


Searching..................................................done


Results from round 3


                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value
Sequences used in model and found again:

UniRef50_Q0THK2 OriC-binding nucleoid-associated protein n=114 T...   103   2e-21
UniRef50_Q9F547 YdfA protein n=14 Tax=Enterobacteriaceae RepID=Q...    93   2e-18
UniRef50_P0ACE5 Hemolysin expression-modulating protein n=147 Ta...    86   3e-16
UniRef50_A7FCE9 Virulence modulating protein n=7 Tax=Enterobacte...    84   1e-15
UniRef50_Q5JBQ4 Hha n=76 Tax=Enterobacteriaceae RepID=Q5JBQ4_ECOLX     84   2e-15
UniRef50_B5RJT3 Haemolysin expression modulating protein n=3 Tax...    79   4e-14
UniRef50_B5EWE3 Conserved domain protein n=4 Tax=Enterobacteriac...    72   4e-12
UniRef50_B0EYN1 Hemolysin expression modulating protein n=13 Tax...    69   3e-11
UniRef50_Q326W4 Putative regulator n=1 Tax=Shigella dysenteriae ...    62   4e-09

Sequences not found previously or not previously below threshold:

UniRef50_B2U682 Conserved domain protein n=1 Tax=Escherichia col...    45   6e-04
UniRef50_Q47498 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID...    40   0.023

>UniRef50_Q0THK2 OriC-binding nucleoid-associated protein n=114
          Tax=Enterobacteriaceae RepID=CNU_ECOL5
          Length = 71

 Score =  103 bits (257), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 71/71 (100%), Positives = 71/71 (100%)

Query: 1  MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60
          MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG
Sbjct: 1  MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60

Query: 61 QVPKSVWHYVQ 71
          QVPKSVWHYVQ
Sbjct: 61 QVPKSVWHYVQ 71


>UniRef50_Q9F547 YdfA protein n=14 Tax=Enterobacteriaceae RepID=Q9F547_ECOLX
          Length = 75

 Score = 93.3 bits (230), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 30/69 (43%), Positives = 43/69 (62%), Gaps = 4/69 (5%)

Query: 2  TVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQ 61
          T QD+L + R+ S+L++LEK+ +  N       EL +   AADHR AEL +  +L+D  +
Sbjct: 10 TKQDWLFQLRRCSTLDTLEKIIEK-NQNCLPPSELESFNAAADHRLAEL-TMNKLYD--K 65

Query: 62 VPKSVWHYV 70
          VP SVW YV
Sbjct: 66 VPPSVWKYV 74


>UniRef50_P0ACE5 Hemolysin expression-modulating protein n=147
          Tax=Enterobacteriaceae RepID=HHA_ECO57
          Length = 72

 Score = 86.3 bits (212), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 27/71 (38%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 1  MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60
          +T  DYL++ R+  ++++LE++ +   Y L+D  EL   Y AADHR AEL +  +L+D  
Sbjct: 6  LTKTDYLMRLRRCQTIDTLERVIEKNKYELSD-NELAVFYSAADHRLAEL-TMNKLYD-- 61

Query: 61 QVPKSVWHYVQ 71
          ++P SVW +++
Sbjct: 62 KIPSSVWKFIR 72


>UniRef50_A7FCE9 Virulence modulating protein n=7 Tax=Enterobacteriaceae
          RepID=A7FCE9_YERP3
          Length = 68

 Score = 84.0 bits (206), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 26/71 (36%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 1  MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60
          M   ++L++ R+ +++E+LE++ +   YTL+ D EL     AADHR AEL +  +L+D  
Sbjct: 2  MNKTEWLMRLRRCTTMETLEQIIERKKYTLSAD-ELETFNSAADHRLAEL-TMNKLYD-- 57

Query: 61 QVPKSVWHYVQ 71
          ++P SVW +++
Sbjct: 58 KIPASVWQHIK 68


>UniRef50_Q5JBQ4 Hha n=76 Tax=Enterobacteriaceae RepID=Q5JBQ4_ECOLX
          Length = 69

 Score = 83.7 bits (205), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 4/70 (5%)

Query: 2  TVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQ 61
          T Q++L + R+ SS+ +LEK+      +L  + E  +   AADHR AEL++ G+L+D  +
Sbjct: 4  TKQEWLYQLRRCSSVNTLEKIIHKNRDSLL-NSERESFNSAADHRLAELIT-GKLYD--R 59

Query: 62 VPKSVWHYVQ 71
          +PK +W YV+
Sbjct: 60 IPKEIWKYVR 69


>UniRef50_B5RJT3 Haemolysin expression modulating protein n=3 Tax=Klebsiella
          pneumoniae RepID=B5RJT3_KLEP3
          Length = 84

 Score = 79.0 bits (193), Expect = 4e-14,   Method: Composition-based stats.
 Identities = 27/72 (37%), Positives = 45/72 (62%), Gaps = 7/72 (9%)

Query: 3  VQDYLLKFRKISSLESLEKLYD----HLNYTLTDDQELINMYRAADHRRAELVSGGRLFD 58
           + YLLKFRK S+ E+L+K+++     LN    D  ++ ++  A DHRRAE+    +++D
Sbjct: 12 RETYLLKFRKCSTTETLDKVFERILDKLNDEGGDINKITSLNGAYDHRRAEIY-MKKIYD 70

Query: 59 LGQVPKSVWHYV 70
            ++P SVWH +
Sbjct: 71 --KIPASVWHLI 80


>UniRef50_B5EWE3 Conserved domain protein n=4 Tax=Enterobacteriaceae
          RepID=B5EWE3_SALA4
          Length = 67

 Score = 72.5 bits (176), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 4/71 (5%)

Query: 1  MTVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLG 60
          M   +YLLKFR+ ++ E+LEK+ +H+   ++  ++      AADHRRAEL +  ++FD  
Sbjct: 1  MDKLEYLLKFRRSNNDETLEKVVEHMEPKISK-EDYNAFQAAADHRRAEL-ACHKIFD-- 56

Query: 61 QVPKSVWHYVQ 71
          +VPKS W +V+
Sbjct: 57 KVPKSAWKFVK 67


>UniRef50_B0EYN1 Hemolysin expression modulating protein n=13
          Tax=Enterobacteriaceae RepID=B0EYN1_ECOLX
          Length = 71

 Score = 69.4 bits (168), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 25/53 (47%), Positives = 31/53 (58%), Gaps = 4/53 (7%)

Query: 19 LEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQVPKSVWHYVQ 71
          LEK+ +   Y L    E    Y AADHRRAELV   +L+D  +VP  VW YV+
Sbjct: 23 LEKVIEINRYKL-PLSESEAFYSAADHRRAELV-MNKLYD--KVPSGVWKYVR 71


>UniRef50_Q326W4 Putative regulator n=1 Tax=Shigella dysenteriae Sd197
          RepID=Q326W4_SHIDS
          Length = 62

 Score = 62.5 bits (150), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 19/51 (37%), Positives = 32/51 (62%), Gaps = 4/51 (7%)

Query: 21 KLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQVPKSVWHYVQ 71
          K+      +L+ + E  +   AADHR AEL++ G+L+D  ++PK +W YV+
Sbjct: 16 KIIHKNRDSLS-NSERESFNSAADHRLAELIT-GKLYD--RIPKEIWKYVR 62


>UniRef50_B2U682 Conserved domain protein n=1 Tax=Escherichia coli 53638
          RepID=B2U682_ECOLX
          Length = 39

 Score = 45.1 bits (105), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 10/30 (33%), Positives = 19/30 (63%)

Query: 2  TVQDYLLKFRKISSLESLEKLYDHLNYTLT 31
          T Q++L + R+ SS+ +LEK+      +L+
Sbjct: 4  TKQEWLYQLRRCSSVNTLEKIIHKNRDSLS 33


>UniRef50_Q47498 K12 plasmid DNA n=2 Tax=Enterobacteriaceae RepID=Q47498_ECOLX
          Length = 70

 Score = 40.1 bits (92), Expect = 0.023,   Method: Composition-based stats.
 Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 4/67 (5%)

Query: 2  TVQDYLLKFRKISSLESLEKLYDHLNYTLTDDQELINMYRAADHRRAELVSGGRLFDLGQ 61
          + +D+L   R+  + +SL+   D     L    E + +  AA+HRR E+ + G+LFD  +
Sbjct: 8  SAEDWLHTVRRFMNEDSLDTYVDSKRDVL-PATEFMRLLTAAEHRRVEIRT-GKLFD--K 63

Query: 62 VPKSVWH 68
          +PK ++ 
Sbjct: 64 IPKGLFR 70


  Database: uniref50.fasta
    Posted date:  Mar 8, 2010 10:38 AM
  Number of letters in database: 1,040,396,356
  Number of sequences in database:  3,077,464
  
Lambda     K      H
   0.308    0.127    0.344 

Lambda     K      H
   0.267   0.0389    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 355,912,924
Number of Sequences: 3077464
Number of extensions: 8124572
Number of successful extensions: 30009
Number of sequences better than 1.0e-01: 11
Number of HSP's better than  0.1 without gapping: 18
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 29954
Number of HSP's gapped (non-prelim): 29
length of query: 71
length of database: 1,040,396,356
effective HSP length: 43
effective length of query: 28
effective length of database: 908,065,404
effective search space: 25425831312
effective search space used: 25425831312
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.2 bits)
S2: 87 (38.2 bits)
