Phyre 2 alignment of P64467 with d2c35a1

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Job Description | P64467
Confidence | 2.61% | Date | Thu Jan 5 12:08:38 GMT 2012
Rank | 93 | Aligned Residues | 35
% Identity | 17% | Template | d2c35a1
SCOP info | SAM domain-like | HRDC-like | RNA polymerase II subunit RBP4 (RpoF)
Resolution | 2.70

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

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Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Query Sequence |  | D | Y | L | L | K | F | R | K | I | S | S | L | E | S | L | E | K | L | Y | D | H | L | N | Y | T | L | T | D | D | Q | E | L | I | N | M
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | N | Y | T | A | R | F | S | R | F | K | N | R | E | T | I | A | S | V | R | S | L | L | L | Q | K | K | L | H | K | F | E | L | A | C | L
Template Known Secondary structure |  |  |  |  |  |  | T |  | S |  |  | S |  |  |  |  |  |  |  |  |  |  |  |  | T | S | S |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
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Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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