Phyre 2 alignment of P64467 with c3cm8A_

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Job Description | P64467
Confidence | 9.80% | Date | Thu Jan 5 12:08:38 GMT 2012
Rank | 14 | Aligned Residues | 22
% Identity | 18% | Template | c3cm8A_
PDB info | PDB header:rna binding protein/transferase | Chain: A: PDB Molecule:polymerase acidic protein; | PDBTitle: a rna polymerase subunit structure from virus
Resolution | 2.90 Å

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 3 | . | . | . | . | . | . | 10 | . | . | . |  |  | . | . | . | . | . | . | 20 | . | . | . | .
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |
Query Sequence |  | V | Q | D | Y | L | L | K | F | R | K | I | . | . | S | S | L | E | S | L | E | K | L | Y | D
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |  |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | K | M | K | W | G | M | E | M | R | R | C | L | L | Q | S | L | Q | Q | I | E | S | M | I | E
Template Known Secondary structure |  |  |  |  |  |  | T | T | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 574 | . | . | . | . | . | 580 | . | . | . | . | . | . | . | . | . | 590 | . | . | . | . | . | . | .

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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