202 d2hoxa1 Probab=99.90   E-value=6.8e-21  Score=146.29  Aligned_columns=298  Identities=14%

Q ss_pred             HHCCCCCCCCCCHHHHHHHHHHHHHC--------CCCEEEEECCHHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCCH
Q ss_conf             74286568768989999999854326--------9947999478268999999999998542478888879997398740
Q batch____        72 ETLWHISNVFTNEPALRLGRKLIEAT--------FAERVVFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHG  143 (406)
Q Consensus        72 ~~~~~~~~~~~~~~~~~la~~l~~~~--------g~~~~~~~~sGt~a~~~Al~~a~~~~~~~~~~~~~~vi~~~~~~Hg  143 (406)
                      ++.++.......+...+|.+.+.++.        ....++++++.+++..+++............+....|++..+.|..
T Consensus        88 ~~~~y~~~~~~~~~~~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL~~pGd~v~~~~p~~v~~~~p~y~~  167 (425)
T d2hoxa1          88 HRMSYFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPV  167 (425)
T ss_dssp             TTCSSSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHH
T ss_pred             CCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHH
T ss_conf             54565456643445289999999998850886788776999468899999999986488861235677435730023778


Q ss_pred             HHHHHHHHCCCCCCCCCCCCCCCCEEECCCCCHHHHHHCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHHHHCCCEE
Q ss_conf             35888863288643477777766704467775888985046674489983666889887789889999999998779889
Q batch____       144 RSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMDDHTCAVVVEPIQGEGGVTAATPEFLQGLRELCDQHQALL  223 (406)
Q Consensus       144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~~~~~viie~~~~~~G~~~~~~~~l~~i~~l~~~~g~~l  223 (406)
                      ..............-..              |.+.+++++.+++.++++++++||+|.+.+           |.++|+++
T Consensus       168 ~~~~~~~~~~~~~~~~~--------------d~~~~~~~~~~~~~~~~i~~P~NPtG~v~~-----------a~~~~~~~  222 (425)
T d2hoxa1         168 FREQTKYFDKKGYVWAG--------------NAANYVNVSNPEQYIEMVTSPNNPEGLLRH-----------AVIKGCKS  222 (425)
T ss_dssp             HHHHHHHSCCTTEEEEE--------------EGGGGTTCSCGGGEEEEEESSCTTTCCCCC-----------CSSTTCEE
T ss_pred             HHHHHHHCCCCCCCCCC--------------CHHHHHHHCCCCCEEEEECCCCCCCCEEEE-----------EEECCCEE
T ss_conf             99999855997444247--------------988999724888579998178888560654-----------23239689


Q ss_pred             EEECCCCCCCCCCCCCHHHHHCCCCEEEECCHHHC-CCCCCCE-EEECHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHH
Q ss_conf             99567335312278722666189830783330321-7444427-875499998644542036668798888778877532
Q batch____       224 VFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALG-GGFPISA-MLTTAEIASAFHPGSHGSTYGGNPLACAVAGAAFDI  301 (406)
Q Consensus       224 i~DE~~~g~g~~g~~~~~~~~~~~~di~t~sK~l~-~g~~~~~-~~~~~~~~~~~~~~~~~~t~~~~~~~~~a~~~~~~~  301 (406)
                      |.||+|...-........   +....+.++||.++ .|..+|+ ++..+++...+.......+.+.+...+.++...+..
T Consensus       223 i~De~y~~~~~~~~~~~~---~~~i~~~S~SK~~g~~GlRiG~~i~~~~~i~~~l~~~~~~~~~~~s~~~Q~aA~~~L~~  299 (425)
T d2hoxa1         223 IYDMVYYWPHYTPIKYKA---DEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKE  299 (425)
T ss_dssp             EEECTTCSTTTSCCCSCB---CCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred             EEECCCCCCCCCCCCCCC---CCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHC
T ss_conf             971432343323333456---85499981551012332310189968989999999864105777368999999999602


Q ss_pred             H---------HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC---------------CCCEEEEEEECCCCHHHHHHH
Q ss_conf             1---------1348999999999999999999986179842255---------------664079999617996789999
Q batch____       302 I---------NTPEVLEGIQAKRQRFVDHLQKIDQQYDVFSDIR---------------GMGLLIGAELKPQYKGRARDF  357 (406)
Q Consensus       302 ~---------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~v~---------------~~g~~~~i~~~~~~~~~~~~l  357 (406)
                      .         ...++.+..++..+..++.+.+.+...+......               ..+.+.|+.+   .......+
T Consensus       300 ~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~~~~f~w~~~---~~~~~~~~  376 (425)
T d2hoxa1         300 VVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKC---EWEEDKDC  376 (425)
T ss_dssp             HHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEE---CSGGGCSH
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC---CCCCHHHH
T ss_conf             013456555548999999999999999999999863576300345655432210013778761699867---89808999


Q ss_pred             HHHHHHCCEEEEEC-----CCCEEEEEECCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             99999789699907-----8997999317999999999999999999999
Q batch____       358 LYAGAEAGVMVLNA-----GPDVMRFAPSLVVEDADIDEGMQRFAHAVAK  402 (406)
Q Consensus       358 ~~~l~~~Gi~~~p~-----g~~~iRi~~~~~~t~e~id~~i~~l~~al~~  402 (406)
                      .+.|.++||++.|+     +++++|+  ++..++|++|+++++|++.+++
T Consensus       377 ~~lL~e~GI~v~pGs~FG~~~~~vRi--Sl~~~~e~ld~~l~rL~~~v~~  424 (425)
T d2hoxa1         377 YQTFQNGRINTQNGVGFEASSRYVRL--SLIKTQDDFDQLMYYLKDMVKA  424 (425)
T ss_dssp             HHHHHHTTEECEEGGGGTSCTTEEEE--ECSSCHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHCCEEEECCCCCCCCCCEEEE--EECCCHHHHHHHHHHHHHHHHC
T ss_conf             99999669499717023898865999--9139989999999999998726