BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (137 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P77453 Hydrogenase-4 component J n=49 Tax=Enterobacteri... 285 4e-76 UniRef50_B5XV87 Formate hydrogenlyase maturation protein n=9 Tax... 124 8e-28 UniRef50_P0AEV8 Formate hydrogenlyase maturation protein hycH n=... 122 3e-27 UniRef50_Q1ZGP2 Formate hydrogenlyase maturation protein n=1 Tax... 110 1e-23 UniRef50_C9PPV4 Formate hydrogenlyase maturation protein HycH n=... 110 2e-23 UniRef50_A4SLW4 Formate hydrogenlyase maturation protein n=2 Tax... 108 5e-23 UniRef50_UPI0001912444 hydrogenase 3 large subunit processing pr... 105 3e-22 UniRef50_Q20XP7 Processing of large subunit (HycE) of hydrogenas... 105 3e-22 UniRef50_Q2C1Q4 HycH n=4 Tax=Vibrionaceae RepID=Q2C1Q4_9GAMM 105 5e-22 UniRef50_D0ZDV2 Formate hydrogenlyase maturation n=2 Tax=Edwards... 104 1e-21 UniRef50_D0WGQ5 Formate hydrogenlyase maturation protein HycH n=... 82 4e-15 UniRef50_C7MLM9 Formate hydrogenlyase maturation protein HycH n=... 82 6e-15 UniRef50_Q2RGG7 Formate hydrogenlyase maturation HycH n=3 Tax=Fi... 76 4e-13 UniRef50_A4E712 Putative uncharacterized protein n=1 Tax=Collins... 70 2e-11 UniRef50_A0RMA1 Putative uncharacterized protein n=2 Tax=Campylo... 41 0.010 >UniRef50_P77453 Hydrogenase-4 component J n=49 Tax=Enterobacteriaceae RepID=HYFJ_ECOLI Length = 137 Score = 285 bits (728), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 137/137 (100%), Positives = 137/137 (100%) Query: 1 MTEECGEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYE 60 MTEECGEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYE Sbjct: 1 MTEECGEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYE 60 Query: 61 DWLALVEEEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLL 120 DWLALVEEEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLL Sbjct: 61 DWLALVEEEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLL 120 Query: 121 DEIVQEPAIYLMARKIA 137 DEIVQEPAIYLMARKIA Sbjct: 121 DEIVQEPAIYLMARKIA 137 >UniRef50_B5XV87 Formate hydrogenlyase maturation protein n=9 Tax=Enterobacteriaceae RepID=B5XV87_KLEP3 Length = 136 Score = 124 bits (312), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 64/130 (49%), Positives = 82/130 (63%), Gaps = 1/130 (0%) Query: 8 IVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALVE 67 +VF L +KF+ +D P+ + QV+YYSLAIGHH+GVIDCL A CP Y W+A +E Sbjct: 5 VVFSQLGRKFIDENDATPDQAQQVVYYSLAIGHHLGVIDCLEAALSCPWEAYLAWIATLE 64 Query: 68 E-EQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLLDEIVQE 126 ARRKM GV +GEIVID+SH A+L AF T QA S + +L +I QE Sbjct: 65 AGSAARRKMEGVPKYGEIVIDSSHVAMLANAFDKAQSAQTPQQQAWSKTMLSMLHDIHQE 124 Query: 127 PAIYLMARKI 136 AIYLM R++ Sbjct: 125 SAIYLMVRRL 134 >UniRef50_P0AEV8 Formate hydrogenlyase maturation protein hycH n=96 Tax=Bacteria RepID=HYCH_ECO57 Length = 136 Score = 122 bits (306), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 63/131 (48%), Positives = 82/131 (62%), Gaps = 1/131 (0%) Query: 7 EIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALV 66 ++VF L +KF+ +D P + QV+YYSLAIGHH+GVIDCL A CP EY W+A + Sbjct: 4 KVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIATL 63 Query: 67 EE-EQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLLDEIVQ 125 E +ARRKM GV +GEIVID +H +L AF TS Q S + +L +I Q Sbjct: 64 EAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHDIHQ 123 Query: 126 EPAIYLMARKI 136 E AIYLM R++ Sbjct: 124 ENAIYLMVRRL 134 >UniRef50_Q1ZGP2 Formate hydrogenlyase maturation protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGP2_9GAMM Length = 186 Score = 110 bits (276), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 55/133 (41%), Positives = 82/133 (61%), Gaps = 2/133 (1%) Query: 4 ECGEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWL 63 + G+++F+ L++KFV ++PE + QV+YY+LAIGHH+G++DCL VAF TEY+ W+ Sbjct: 52 DTGKVLFYALKRKFVDERFDVPEEAKQVLYYTLAIGHHLGIVDCLEVAFEATTTEYKKWV 111 Query: 64 ALVE-EEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVW-QARSIQFIHLLD 121 L++ +A RKM+ TFGEI I H +L AF+ L S Q + FI +L Sbjct: 112 NLLDPSTEAHRKMIRYFTFGEITIYPDHIHMLACAFSALDKAKMSTKEQTMTDAFIKVLT 171 Query: 122 EIVQEPAIYLMAR 134 I E +Y+M R Sbjct: 172 AIYHEQTMYMMIR 184 >UniRef50_C9PPV4 Formate hydrogenlyase maturation protein HycH n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PPV4_9PAST Length = 141 Score = 110 bits (274), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 54/131 (41%), Positives = 80/131 (61%), Gaps = 6/131 (4%) Query: 8 IVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALVE 67 ++F+ L +KFV S +++PE S QVMYYSLAIGHHVGVIDC +C +Y+ WL + Sbjct: 12 VLFYALNQKFVDSDEDVPEQSQQVMYYSLAIGHHVGVIDCFKPILQCTYEQYKQWLDKLP 71 Query: 68 EEQARRKMLGVMTFGEIVIDASHT---ALLTRAFAPLADDATSVWQARSIQFIHLLDEIV 124 E +++RK+ G++ FGEI+ID +H AL+ P D W + + I Sbjct: 72 ESESKRKLAGLIKFGEIMIDVTHINGLALILSKNRPHFSDQECEW---TDILMANFAAIQ 128 Query: 125 QEPAIYLMARK 135 +EPA+YLM ++ Sbjct: 129 KEPAMYLMVKR 139 >UniRef50_A4SLW4 Formate hydrogenlyase maturation protein n=2 Tax=Aeromonas RepID=A4SLW4_AERS4 Length = 137 Score = 108 bits (270), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 58/132 (43%), Positives = 80/132 (60%), Gaps = 4/132 (3%) Query: 7 EIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLA-L 65 ++ F+ L +KFV ++PE + +VMYYSLAIGHH+G++DCL+ CPLT Y DW+A L Sbjct: 4 QVFFYRLSRKFVDEQFDVPEEAKEVMYYSLAIGHHLGIVDCLSADLVCPLTGYRDWVAKL 63 Query: 66 VEEEQARRKMLGVMTFGEIVIDASHTALLTRAFAPL--ADDATSVWQ-ARSIQFIHLLDE 122 +ARRKM G +TFGEI I H +L AF L AD+ Q + F+ L Sbjct: 64 PAGSEARRKMEGFLTFGEITIYREHCHMLACAFDRLRKADNVLDELQLGWTNTFMDQLTA 123 Query: 123 IVQEPAIYLMAR 134 + +P +YLM R Sbjct: 124 LYNDPHMYLMVR 135 >UniRef50_UPI0001912444 hydrogenase 3 large subunit processing protein n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI0001912444 Length = 120 Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 50/93 (53%), Positives = 63/93 (67%), Gaps = 1/93 (1%) Query: 7 EIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALV 66 ++VF L +KF+ +D P + QV+YYSLAIGHH+GVIDCL A CP EY W+A + Sbjct: 5 QVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIATL 64 Query: 67 EE-EQARRKMLGVMTFGEIVIDASHTALLTRAF 98 E ARRKM GV +GEIVID +H +L RAF Sbjct: 65 EAGSDARRKMEGVPKYGEIVIDFNHVQMLARAF 97 >UniRef50_Q20XP7 Processing of large subunit (HycE) of hydrogenase 3 n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q20XP7_RHOPB Length = 133 Score = 105 bits (263), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 57/134 (42%), Positives = 79/134 (58%), Gaps = 6/134 (4%) Query: 6 GEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLAL 65 G+++F+ L K + ++P+ + QV+YYSLAIGHHVGV DC RC +E +A Sbjct: 3 GDVIFYRLNAKIMERDGDIPDDAKQVIYYSLAIGHHVGVFDCFKPVLRCKAEFFERLVAA 62 Query: 66 VEEEQARRKMLGVMTFGEIVIDASHTALLTRAF---APLADDATSVWQARSIQFIHLLDE 122 + E +ARRK+ G+ FGEI ID SHT LL A +P D ++ W R + L Sbjct: 63 MPEGEARRKLDGLHRFGEITIDRSHTELLGAAIDQVSPSLDSESADW-LRELGVS--LAA 119 Query: 123 IVQEPAIYLMARKI 136 I EPAIYLM R++ Sbjct: 120 IEAEPAIYLMGRRL 133 >UniRef50_Q2C1Q4 HycH n=4 Tax=Vibrionaceae RepID=Q2C1Q4_9GAMM Length = 154 Score = 105 bits (261), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 53/131 (40%), Positives = 82/131 (62%), Gaps = 4/131 (3%) Query: 7 EIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALV 66 + F++L +KFV S ++PE + Q+MYYSLAIGHH+GV+DCL+ +C EY DW++ + Sbjct: 22 NVYFYSLGRKFVDESYDVPEEAKQIMYYSLAIGHHLGVVDCLDAVLKCSGHEYLDWISGL 81 Query: 67 EEE-QARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQ--FIHLLDEI 123 ++ +A RKM G + FGEI I H +L AF + D A +++ + FI L +I Sbjct: 82 DQSGEAFRKMKGFLVFGEITIYPEHLNMLALAFDGI-DSAIQSEKSKQLTHGFIEALGDI 140 Query: 124 VQEPAIYLMAR 134 +E +Y+M R Sbjct: 141 HREQTMYMMIR 151 >UniRef50_D0ZDV2 Formate hydrogenlyase maturation n=2 Tax=Edwardsiella RepID=D0ZDV2_EDWTE Length = 147 Score = 104 bits (259), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 58/131 (44%), Positives = 75/131 (57%), Gaps = 3/131 (2%) Query: 8 IVFWTLRKKFVASSDE---MPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLA 64 +VF L KFV +++ P + +V+YYSLAIGHH+GVIDCL PL++Y W+A Sbjct: 14 VVFHILNAKFVQQAEDDAATPPAAREVIYYSLAIGHHLGVIDCLKPYLSLPLSDYRAWIA 73 Query: 65 LVEEEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLLDEIV 124 +E +ARRK+ GV+ FGEI ID SH L A T QA S I L I Sbjct: 74 QLEAGEARRKLEGVLRFGEIGIDISHIHTLACALDRALPAMTPPQQAWSRSLIDALQLIE 133 Query: 125 QEPAIYLMARK 135 EP IYLM ++ Sbjct: 134 NEPTIYLMVKR 144 >UniRef50_D0WGQ5 Formate hydrogenlyase maturation protein HycH n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WGQ5_9ACTN Length = 151 Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 42/124 (33%), Positives = 68/124 (54%) Query: 13 LRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALVEEEQAR 72 L +KFV S+ +P+ + V+YY+L++GHH GVIDC P+ +E A + E +AR Sbjct: 26 LVRKFVDSAQSVPDDAKDVLYYTLSVGHHTGVIDCFECVLSMPVEVFERICATLPEGEAR 85 Query: 73 RKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLLDEIVQEPAIYLM 132 K+ GVM EI + + ++ A PLA A F+ L + +EP++Y+M Sbjct: 86 YKLEGVMRHSEIELGKAQVDIVIDALEPLASAADEEVARYVGLFLEQLRIVREEPSVYVM 145 Query: 133 ARKI 136 R++ Sbjct: 146 VREV 149 >UniRef50_C7MLM9 Formate hydrogenlyase maturation protein HycH n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLM9_CRYCD Length = 165 Score = 82.0 bits (201), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 49/141 (34%), Positives = 74/141 (52%), Gaps = 13/141 (9%) Query: 8 IVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALVE 67 I F+ L +K V ++ +PE V+YY+LAIGHH GV+D P+ Y + L+E Sbjct: 23 ISFYLLTRKMVDNAKSIPEDVQDVLYYTLAIGHHTGVMDFFEERLSIPVESYRKIVDLME 82 Query: 68 EEQARRKMLGVMTFGEIVIDASH-TALLTRAFAPLAD-DATSVWQARSI----------- 114 ++QARRK LGV FGEI + H + +L A + L+ D + +SI Sbjct: 83 DDQARRKWLGVFKFGEIEVGKEHLSQVLPAARSALSHIDVFNEVGKKSISLTADEIDELS 142 Query: 115 QFIHLLDEIVQEPAIYLMARK 135 + + LL + E +YLM R+ Sbjct: 143 RLVELLLRVRSETNVYLMVRR 163 >UniRef50_Q2RGG7 Formate hydrogenlyase maturation HycH n=3 Tax=Firmicutes RepID=Q2RGG7_MOOTA Length = 146 Score = 75.9 bits (185), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 45/133 (33%), Positives = 71/133 (53%), Gaps = 9/133 (6%) Query: 6 GEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLAL 65 G + F+ L K+FV D +P Q+ YY+LAIGHH+GV+DCL Y W++ Sbjct: 3 GRVEFYKLCKRFVDEKD-VPAEVQQLEYYALAIGHHIGVVDCLASIMAMDKEAYFKWISK 61 Query: 66 VEEEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQF----IHLLD 121 + +AR K+ G+ +GE+ I+ H L A ++A + + Q+ + LL Sbjct: 62 LPRGKARSKLEGLARWGELEINKEHVPALIAAL----EEANASFLPEEKQWTDCLLRLLY 117 Query: 122 EIVQEPAIYLMAR 134 + +EPAIYL+ R Sbjct: 118 AMEKEPAIYLVVR 130 >UniRef50_A4E712 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E712_9ACTN Length = 193 Score = 70.1 bits (170), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 41/147 (27%), Positives = 73/147 (49%), Gaps = 19/147 (12%) Query: 7 EIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALV 66 ++VF+ L +KFV + +++P+ + V+YY+LA+GHH GV+DC P+ + + + Sbjct: 45 QVVFYELTRKFVETEEDVPQEACDVLYYTLAVGHHTGVLDCFEPRLSVPVDVFYSLVDAL 104 Query: 67 EEEQARRKMLGVMTFGEIVIDASHT--------ALLT-RAFAPLADDATSVWQ------A 111 E +A+ K + +FGE +D + ALL R F A SV+ A Sbjct: 105 PEGEAKTKFEAIRSFGECQLDKAAVPSLLEVCDALLDERGFRGSAKAGISVFDDDFGLHA 164 Query: 112 RSIQFIHLLDEIVQE----PAIYLMAR 134 + + F+ ++V+ +YL R Sbjct: 165 QQVAFLMKFRDLVERVRDVSGVYLTGR 191 >UniRef50_A0RMA1 Putative uncharacterized protein n=2 Tax=Campylobacter fetus RepID=A0RMA1_CAMFF Length = 113 Score = 41.2 bits (95), Expect = 0.010, Method: Compositional matrix adjust. Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 9/91 (9%) Query: 8 IVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYED--WLAL 65 I W L K+ V + E+P+ Q++ +S +GH VG ID F + E++D W + Sbjct: 2 IQVWKLTKRHVDENAELPQIYKQIVTFSTCVGHGVGTID-----FNEKIAEFDDEQWNKM 56 Query: 66 VE--EEQARRKMLGVMTFGEIVIDASHTALL 94 ++ +E + K+ V + E+ I H +L Sbjct: 57 LDSSDEYVKFKLGNVNKYFEVEILPVHAKVL 87 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P77453 Hydrogenase-4 component J n=49 Tax=Enterobacteri... 197 1e-49 UniRef50_B5XV87 Formate hydrogenlyase maturation protein n=9 Tax... 194 9e-49 UniRef50_P0AEV8 Formate hydrogenlyase maturation protein hycH n=... 193 1e-48 UniRef50_A4SLW4 Formate hydrogenlyase maturation protein n=2 Tax... 184 1e-45 UniRef50_D0ZDV2 Formate hydrogenlyase maturation n=2 Tax=Edwards... 181 7e-45 UniRef50_C9PPV4 Formate hydrogenlyase maturation protein HycH n=... 176 2e-43 UniRef50_Q1ZGP2 Formate hydrogenlyase maturation protein n=1 Tax... 176 2e-43 UniRef50_Q20XP7 Processing of large subunit (HycE) of hydrogenas... 174 9e-43 UniRef50_Q2C1Q4 HycH n=4 Tax=Vibrionaceae RepID=Q2C1Q4_9GAMM 172 3e-42 UniRef50_D0WGQ5 Formate hydrogenlyase maturation protein HycH n=... 165 5e-40 UniRef50_Q2RGG7 Formate hydrogenlyase maturation HycH n=3 Tax=Fi... 163 2e-39 UniRef50_C7MLM9 Formate hydrogenlyase maturation protein HycH n=... 149 2e-35 UniRef50_UPI0001912444 hydrogenase 3 large subunit processing pr... 149 3e-35 UniRef50_A4E712 Putative uncharacterized protein n=1 Tax=Collins... 147 1e-34 Sequences not found previously or not previously below threshold: UniRef50_A0RMA1 Putative uncharacterized protein n=2 Tax=Campylo... 52 5e-06 UniRef50_A7ZBL6 Putative uncharacterized protein n=2 Tax=Epsilon... 52 6e-06 UniRef50_D1B464 Putative uncharacterized protein n=5 Tax=Campylo... 50 2e-05 >UniRef50_P77453 Hydrogenase-4 component J n=49 Tax=Enterobacteriaceae RepID=HYFJ_ECOLI Length = 137 Score = 197 bits (501), Expect = 1e-49, Method: Composition-based stats. Identities = 137/137 (100%), Positives = 137/137 (100%) Query: 1 MTEECGEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYE 60 MTEECGEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYE Sbjct: 1 MTEECGEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYE 60 Query: 61 DWLALVEEEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLL 120 DWLALVEEEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLL Sbjct: 61 DWLALVEEEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLL 120 Query: 121 DEIVQEPAIYLMARKIA 137 DEIVQEPAIYLMARKIA Sbjct: 121 DEIVQEPAIYLMARKIA 137 >UniRef50_B5XV87 Formate hydrogenlyase maturation protein n=9 Tax=Enterobacteriaceae RepID=B5XV87_KLEP3 Length = 136 Score = 194 bits (492), Expect = 9e-49, Method: Composition-based stats. Identities = 64/130 (49%), Positives = 82/130 (63%), Gaps = 1/130 (0%) Query: 8 IVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALVE 67 +VF L +KF+ +D P+ + QV+YYSLAIGHH+GVIDCL A CP Y W+A +E Sbjct: 5 VVFSQLGRKFIDENDATPDQAQQVVYYSLAIGHHLGVIDCLEAALSCPWEAYLAWIATLE 64 Query: 68 EE-QARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLLDEIVQE 126 ARRKM GV +GEIVID+SH A+L AF T QA S + +L +I QE Sbjct: 65 AGSAARRKMEGVPKYGEIVIDSSHVAMLANAFDKAQSAQTPQQQAWSKTMLSMLHDIHQE 124 Query: 127 PAIYLMARKI 136 AIYLM R++ Sbjct: 125 SAIYLMVRRL 134 >UniRef50_P0AEV8 Formate hydrogenlyase maturation protein hycH n=96 Tax=Bacteria RepID=HYCH_ECO57 Length = 136 Score = 193 bits (491), Expect = 1e-48, Method: Composition-based stats. Identities = 63/131 (48%), Positives = 82/131 (62%), Gaps = 1/131 (0%) Query: 7 EIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALV 66 ++VF L +KF+ +D P + QV+YYSLAIGHH+GVIDCL A CP EY W+A + Sbjct: 4 KVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIATL 63 Query: 67 EEE-QARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLLDEIVQ 125 E +ARRKM GV +GEIVID +H +L AF TS Q S + +L +I Q Sbjct: 64 EAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHDIHQ 123 Query: 126 EPAIYLMARKI 136 E AIYLM R++ Sbjct: 124 ENAIYLMVRRL 134 >UniRef50_A4SLW4 Formate hydrogenlyase maturation protein n=2 Tax=Aeromonas RepID=A4SLW4_AERS4 Length = 137 Score = 184 bits (466), Expect = 1e-45, Method: Composition-based stats. Identities = 54/132 (40%), Positives = 77/132 (58%), Gaps = 4/132 (3%) Query: 7 EIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALV 66 ++ F+ L +KFV ++PE + +VMYYSLAIGHH+G++DCL+ CPLT Y DW+A + Sbjct: 4 QVFFYRLSRKFVDEQFDVPEEAKEVMYYSLAIGHHLGIVDCLSADLVCPLTGYRDWVAKL 63 Query: 67 EEE-QARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDAT---SVWQARSIQFIHLLDE 122 +ARRKM G +TFGEI I H +L AF L + + F+ L Sbjct: 64 PAGSEARRKMEGFLTFGEITIYREHCHMLACAFDRLRKADNVLDELQLGWTNTFMDQLTA 123 Query: 123 IVQEPAIYLMAR 134 + +P +YLM R Sbjct: 124 LYNDPHMYLMVR 135 >UniRef50_D0ZDV2 Formate hydrogenlyase maturation n=2 Tax=Edwardsiella RepID=D0ZDV2_EDWTE Length = 147 Score = 181 bits (459), Expect = 7e-45, Method: Composition-based stats. Identities = 58/131 (44%), Positives = 75/131 (57%), Gaps = 3/131 (2%) Query: 8 IVFWTLRKKFVASSDE---MPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLA 64 +VF L KFV +++ P + +V+YYSLAIGHH+GVIDCL PL++Y W+A Sbjct: 14 VVFHILNAKFVQQAEDDAATPPAAREVIYYSLAIGHHLGVIDCLKPYLSLPLSDYRAWIA 73 Query: 65 LVEEEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLLDEIV 124 +E +ARRK+ GV+ FGEI ID SH L A T QA S I L I Sbjct: 74 QLEAGEARRKLEGVLRFGEIGIDISHIHTLACALDRALPAMTPPQQAWSRSLIDALQLIE 133 Query: 125 QEPAIYLMARK 135 EP IYLM ++ Sbjct: 134 NEPTIYLMVKR 144 >UniRef50_C9PPV4 Formate hydrogenlyase maturation protein HycH n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PPV4_9PAST Length = 141 Score = 176 bits (446), Expect = 2e-43, Method: Composition-based stats. Identities = 50/128 (39%), Positives = 77/128 (60%) Query: 8 IVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALVE 67 ++F+ L +KFV S +++PE S QVMYYSLAIGHHVGVIDC +C +Y+ WL + Sbjct: 12 VLFYALNQKFVDSDEDVPEQSQQVMYYSLAIGHHVGVIDCFKPILQCTYEQYKQWLDKLP 71 Query: 68 EEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLLDEIVQEP 127 E +++RK+ G++ FGEI+ID +H L + + + + I +EP Sbjct: 72 ESESKRKLAGLIKFGEIMIDVTHINGLALILSKNRPHFSDQECEWTDILMANFAAIQKEP 131 Query: 128 AIYLMARK 135 A+YLM ++ Sbjct: 132 AMYLMVKR 139 >UniRef50_Q1ZGP2 Formate hydrogenlyase maturation protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGP2_9GAMM Length = 186 Score = 176 bits (446), Expect = 2e-43, Method: Composition-based stats. Identities = 55/133 (41%), Positives = 81/133 (60%), Gaps = 2/133 (1%) Query: 4 ECGEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWL 63 + G+++F+ L++KFV ++PE + QV+YY+LAIGHH+G++DCL VAF TEY+ W+ Sbjct: 52 DTGKVLFYALKRKFVDERFDVPEEAKQVLYYTLAIGHHLGIVDCLEVAFEATTTEYKKWV 111 Query: 64 ALV-EEEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSV-WQARSIQFIHLLD 121 L+ +A RKM+ TFGEI I H +L AF+ L S Q + FI +L Sbjct: 112 NLLDPSTEAHRKMIRYFTFGEITIYPDHIHMLACAFSALDKAKMSTKEQTMTDAFIKVLT 171 Query: 122 EIVQEPAIYLMAR 134 I E +Y+M R Sbjct: 172 AIYHEQTMYMMIR 184 >UniRef50_Q20XP7 Processing of large subunit (HycE) of hydrogenase 3 n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q20XP7_RHOPB Length = 133 Score = 174 bits (441), Expect = 9e-43, Method: Composition-based stats. Identities = 54/132 (40%), Positives = 75/132 (56%) Query: 5 CGEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLA 64 G+++F+ L K + ++P+ + QV+YYSLAIGHHVGV DC RC +E +A Sbjct: 2 SGDVIFYRLNAKIMERDGDIPDDAKQVIYYSLAIGHHVGVFDCFKPVLRCKAEFFERLVA 61 Query: 65 LVEEEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLLDEIV 124 + E +ARRK+ G+ FGEI ID SHT LL A ++ S + L I Sbjct: 62 AMPEGEARRKLDGLHRFGEITIDRSHTELLGAAIDQVSPSLDSESADWLRELGVSLAAIE 121 Query: 125 QEPAIYLMARKI 136 EPAIYLM R++ Sbjct: 122 AEPAIYLMGRRL 133 >UniRef50_Q2C1Q4 HycH n=4 Tax=Vibrionaceae RepID=Q2C1Q4_9GAMM Length = 154 Score = 172 bits (436), Expect = 3e-42, Method: Composition-based stats. Identities = 52/130 (40%), Positives = 79/130 (60%), Gaps = 2/130 (1%) Query: 7 EIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALV 66 + F++L +KFV S ++PE + Q+MYYSLAIGHH+GV+DCL+ +C EY DW++ + Sbjct: 22 NVYFYSLGRKFVDESYDVPEEAKQIMYYSLAIGHHLGVVDCLDAVLKCSGHEYLDWISGL 81 Query: 67 EE-EQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQAR-SIQFIHLLDEIV 124 ++ +A RKM G + FGEI I H +L AF + S + + FI L +I Sbjct: 82 DQSGEAFRKMKGFLVFGEITIYPEHLNMLALAFDGIDSAIQSEKSKQLTHGFIEALGDIH 141 Query: 125 QEPAIYLMAR 134 +E +Y+M R Sbjct: 142 REQTMYMMIR 151 >UniRef50_D0WGQ5 Formate hydrogenlyase maturation protein HycH n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WGQ5_9ACTN Length = 151 Score = 165 bits (417), Expect = 5e-40, Method: Composition-based stats. Identities = 42/129 (32%), Positives = 69/129 (53%) Query: 8 IVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALVE 67 + L +KFV S+ +P+ + V+YY+L++GHH GVIDC P+ +E A + Sbjct: 21 VRVHRLVRKFVDSAQSVPDDAKDVLYYTLSVGHHTGVIDCFECVLSMPVEVFERICATLP 80 Query: 68 EEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLLDEIVQEP 127 E +AR K+ GVM EI + + ++ A PLA A F+ L + +EP Sbjct: 81 EGEARYKLEGVMRHSEIELGKAQVDIVIDALEPLASAADEEVARYVGLFLEQLRIVREEP 140 Query: 128 AIYLMARKI 136 ++Y+M R++ Sbjct: 141 SVYVMVREV 149 >UniRef50_Q2RGG7 Formate hydrogenlyase maturation HycH n=3 Tax=Firmicutes RepID=Q2RGG7_MOOTA Length = 146 Score = 163 bits (412), Expect = 2e-39, Method: Composition-based stats. Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 1/129 (0%) Query: 6 GEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLAL 65 G + F+ L K+FV ++P Q+ YY+LAIGHH+GV+DCL Y W++ Sbjct: 3 GRVEFYKLCKRFVDEK-DVPAEVQQLEYYALAIGHHIGVVDCLASIMAMDKEAYFKWISK 61 Query: 66 VEEEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLLDEIVQ 125 + +AR K+ G+ +GE+ I+ H L A + + + LL + + Sbjct: 62 LPRGKARSKLEGLARWGELEINKEHVPALIAALEEANASFLPEEKQWTDCLLRLLYAMEK 121 Query: 126 EPAIYLMAR 134 EPAIYL+ R Sbjct: 122 EPAIYLVVR 130 >UniRef50_C7MLM9 Formate hydrogenlyase maturation protein HycH n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLM9_CRYCD Length = 165 Score = 149 bits (377), Expect = 2e-35, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 13/141 (9%) Query: 8 IVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALVE 67 I F+ L +K V ++ +PE V+YY+LAIGHH GV+D P+ Y + L+E Sbjct: 23 ISFYLLTRKMVDNAKSIPEDVQDVLYYTLAIGHHTGVMDFFEERLSIPVESYRKIVDLME 82 Query: 68 EEQARRKMLGVMTFGEIVIDASHT-ALLTRAFAPLAD-DATSVWQARSI----------- 114 ++QARRK LGV FGEI + H +L A + L+ D + +SI Sbjct: 83 DDQARRKWLGVFKFGEIEVGKEHLSQVLPAARSALSHIDVFNEVGKKSISLTADEIDELS 142 Query: 115 QFIHLLDEIVQEPAIYLMARK 135 + + LL + E +YLM R+ Sbjct: 143 RLVELLLRVRSETNVYLMVRR 163 >UniRef50_UPI0001912444 hydrogenase 3 large subunit processing protein n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI0001912444 Length = 120 Score = 149 bits (376), Expect = 3e-35, Method: Composition-based stats. Identities = 50/110 (45%), Positives = 63/110 (57%), Gaps = 1/110 (0%) Query: 7 EIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALV 66 ++VF L +KF+ +D P + QV+YYSLAIGHH+GVIDCL A CP EY W+A + Sbjct: 5 QVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIATL 64 Query: 67 EEE-QARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQ 115 E ARRKM GV +GEIVID +H +L RAF Sbjct: 65 EAGSDARRKMEGVPKYGEIVIDFNHVQMLARAFDEARAAHDPAAARMEQT 114 >UniRef50_A4E712 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E712_9ACTN Length = 193 Score = 147 bits (371), Expect = 1e-34, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 19/147 (12%) Query: 7 EIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALV 66 ++VF+ L +KFV + +++P+ + V+YY+LA+GHH GV+DC P+ + + + Sbjct: 45 QVVFYELTRKFVETEEDVPQEACDVLYYTLAVGHHTGVLDCFEPRLSVPVDVFYSLVDAL 104 Query: 67 EEEQARRKMLGVMTFGEIVIDASHTALLT---------RAFAPLADDATSVWQ------A 111 E +A+ K + +FGE +D + L R F A SV+ A Sbjct: 105 PEGEAKTKFEAIRSFGECQLDKAAVPSLLEVCDALLDERGFRGSAKAGISVFDDDFGLHA 164 Query: 112 RSIQFIHLLDEIVQE----PAIYLMAR 134 + + F+ ++V+ +YL R Sbjct: 165 QQVAFLMKFRDLVERVRDVSGVYLTGR 191 >UniRef50_A0RMA1 Putative uncharacterized protein n=2 Tax=Campylobacter fetus RepID=A0RMA1_CAMFF Length = 113 Score = 51.9 bits (123), Expect = 5e-06, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Query: 8 IVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALVE 67 I W L K+ V + E+P+ Q++ +S +GH VG ID ++ L + Sbjct: 2 IQVWKLTKRHVDENAELPQIYKQIVTFSTCVGHGVGTIDFNEKIAEFDDEQWNKMLDSSD 61 Query: 68 EEQARRKMLGVMTFGEIVIDASHTALLTRAF 98 E + K+ V + E+ I H +L Sbjct: 62 E-YVKFKLGNVNKYFEVEILPVHAKVLKDKL 91 >UniRef50_A7ZBL6 Putative uncharacterized protein n=2 Tax=Epsilonproteobacteria RepID=A7ZBL6_CAMC1 Length = 114 Score = 51.9 bits (123), Expect = 6e-06, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Query: 8 IVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALVE 67 I + L K+ + ++++P ++ +S +GH VG ID E+++ + Sbjct: 2 IQVYKLTKRHMDDNEKLPRELKEIKIFSTCVGHGVGTIDFSEKVLELSDEEFDEMI-KNS 60 Query: 68 EEQARRKMLGVMTFGEIVIDASHTALL 94 E + K+ + + E+ I A H A L Sbjct: 61 GEYVKFKIGNLSKYFEVEIFAEHIARL 87 >UniRef50_D1B464 Putative uncharacterized protein n=5 Tax=Campylobacterales RepID=D1B464_SULD5 Length = 115 Score = 50.0 bits (118), Expect = 2e-05, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Query: 8 IVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALVE 67 I + LRK+ + + Q+ +S IGH +G ID YE+ LA Sbjct: 2 IEVYQLRKRHLDGAKSGDAKLEQIKIFSTCIGHGIGTIDFSEKVLEIENEAYENILAG-G 60 Query: 68 EEQARRKMLGVMTFGEIVIDASHTALL 94 + + K+ + + EI I H L Sbjct: 61 GKYLKFKLGNLSKYFEIEIFPEHAQKL 87 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P0AEV8 Formate hydrogenlyase maturation protein hycH n=... 191 4e-48 UniRef50_B5XV87 Formate hydrogenlyase maturation protein n=9 Tax... 190 1e-47 UniRef50_P77453 Hydrogenase-4 component J n=49 Tax=Enterobacteri... 185 3e-46 UniRef50_C9PPV4 Formate hydrogenlyase maturation protein HycH n=... 182 2e-45 UniRef50_A4SLW4 Formate hydrogenlyase maturation protein n=2 Tax... 179 2e-44 UniRef50_D0ZDV2 Formate hydrogenlyase maturation n=2 Tax=Edwards... 178 5e-44 UniRef50_Q20XP7 Processing of large subunit (HycE) of hydrogenas... 178 6e-44 UniRef50_Q2RGG7 Formate hydrogenlyase maturation HycH n=3 Tax=Fi... 172 5e-42 UniRef50_Q2C1Q4 HycH n=4 Tax=Vibrionaceae RepID=Q2C1Q4_9GAMM 170 1e-41 UniRef50_Q1ZGP2 Formate hydrogenlyase maturation protein n=1 Tax... 169 2e-41 UniRef50_D0WGQ5 Formate hydrogenlyase maturation protein HycH n=... 166 2e-40 UniRef50_UPI0001912444 hydrogenase 3 large subunit processing pr... 145 5e-34 UniRef50_C7MLM9 Formate hydrogenlyase maturation protein HycH n=... 143 2e-33 UniRef50_A4E712 Putative uncharacterized protein n=1 Tax=Collins... 138 5e-32 UniRef50_A0RMA1 Putative uncharacterized protein n=2 Tax=Campylo... 113 2e-24 UniRef50_A7ZBL6 Putative uncharacterized protein n=2 Tax=Epsilon... 106 2e-22 UniRef50_D1B464 Putative uncharacterized protein n=5 Tax=Campylo... 104 1e-21 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_P0AEV8 Formate hydrogenlyase maturation protein hycH n=96 Tax=Bacteria RepID=HYCH_ECO57 Length = 136 Score = 191 bits (486), Expect = 4e-48, Method: Composition-based stats. Identities = 63/131 (48%), Positives = 82/131 (62%), Gaps = 1/131 (0%) Query: 7 EIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALV 66 ++VF L +KF+ +D P + QV+YYSLAIGHH+GVIDCL A CP EY W+A + Sbjct: 4 KVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIATL 63 Query: 67 EEE-QARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLLDEIVQ 125 E +ARRKM GV +GEIVID +H +L AF TS Q S + +L +I Q Sbjct: 64 EAGSEARRKMEGVPKYGEIVIDINHVPMLANAFDKARAAQTSQQQEWSTMLLSMLHDIHQ 123 Query: 126 EPAIYLMARKI 136 E AIYLM R++ Sbjct: 124 ENAIYLMVRRL 134 >UniRef50_B5XV87 Formate hydrogenlyase maturation protein n=9 Tax=Enterobacteriaceae RepID=B5XV87_KLEP3 Length = 136 Score = 190 bits (483), Expect = 1e-47, Method: Composition-based stats. Identities = 64/130 (49%), Positives = 82/130 (63%), Gaps = 1/130 (0%) Query: 8 IVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALVE 67 +VF L +KF+ +D P+ + QV+YYSLAIGHH+GVIDCL A CP Y W+A +E Sbjct: 5 VVFSQLGRKFIDENDATPDQAQQVVYYSLAIGHHLGVIDCLEAALSCPWEAYLAWIATLE 64 Query: 68 EE-QARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLLDEIVQE 126 ARRKM GV +GEIVID+SH A+L AF T QA S + +L +I QE Sbjct: 65 AGSAARRKMEGVPKYGEIVIDSSHVAMLANAFDKAQSAQTPQQQAWSKTMLSMLHDIHQE 124 Query: 127 PAIYLMARKI 136 AIYLM R++ Sbjct: 125 SAIYLMVRRL 134 >UniRef50_P77453 Hydrogenase-4 component J n=49 Tax=Enterobacteriaceae RepID=HYFJ_ECOLI Length = 137 Score = 185 bits (471), Expect = 3e-46, Method: Composition-based stats. Identities = 137/137 (100%), Positives = 137/137 (100%) Query: 1 MTEECGEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYE 60 MTEECGEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYE Sbjct: 1 MTEECGEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYE 60 Query: 61 DWLALVEEEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLL 120 DWLALVEEEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLL Sbjct: 61 DWLALVEEEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLL 120 Query: 121 DEIVQEPAIYLMARKIA 137 DEIVQEPAIYLMARKIA Sbjct: 121 DEIVQEPAIYLMARKIA 137 >UniRef50_C9PPV4 Formate hydrogenlyase maturation protein HycH n=1 Tax=Pasteurella dagmatis ATCC 43325 RepID=C9PPV4_9PAST Length = 141 Score = 182 bits (463), Expect = 2e-45, Method: Composition-based stats. Identities = 50/128 (39%), Positives = 77/128 (60%) Query: 8 IVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALVE 67 ++F+ L +KFV S +++PE S QVMYYSLAIGHHVGVIDC +C +Y+ WL + Sbjct: 12 VLFYALNQKFVDSDEDVPEQSQQVMYYSLAIGHHVGVIDCFKPILQCTYEQYKQWLDKLP 71 Query: 68 EEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLLDEIVQEP 127 E +++RK+ G++ FGEI+ID +H L + + + + I +EP Sbjct: 72 ESESKRKLAGLIKFGEIMIDVTHINGLALILSKNRPHFSDQECEWTDILMANFAAIQKEP 131 Query: 128 AIYLMARK 135 A+YLM ++ Sbjct: 132 AMYLMVKR 139 >UniRef50_A4SLW4 Formate hydrogenlyase maturation protein n=2 Tax=Aeromonas RepID=A4SLW4_AERS4 Length = 137 Score = 179 bits (455), Expect = 2e-44, Method: Composition-based stats. Identities = 54/132 (40%), Positives = 77/132 (58%), Gaps = 4/132 (3%) Query: 7 EIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALV 66 ++ F+ L +KFV ++PE + +VMYYSLAIGHH+G++DCL+ CPLT Y DW+A + Sbjct: 4 QVFFYRLSRKFVDEQFDVPEEAKEVMYYSLAIGHHLGIVDCLSADLVCPLTGYRDWVAKL 63 Query: 67 EEE-QARRKMLGVMTFGEIVIDASHTALLTRAFAPLADD---ATSVWQARSIQFIHLLDE 122 +ARRKM G +TFGEI I H +L AF L + + F+ L Sbjct: 64 PAGSEARRKMEGFLTFGEITIYREHCHMLACAFDRLRKADNVLDELQLGWTNTFMDQLTA 123 Query: 123 IVQEPAIYLMAR 134 + +P +YLM R Sbjct: 124 LYNDPHMYLMVR 135 >UniRef50_D0ZDV2 Formate hydrogenlyase maturation n=2 Tax=Edwardsiella RepID=D0ZDV2_EDWTE Length = 147 Score = 178 bits (451), Expect = 5e-44, Method: Composition-based stats. Identities = 58/131 (44%), Positives = 75/131 (57%), Gaps = 3/131 (2%) Query: 8 IVFWTLRKKFVASSDE---MPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLA 64 +VF L KFV +++ P + +V+YYSLAIGHH+GVIDCL PL++Y W+A Sbjct: 14 VVFHILNAKFVQQAEDDAATPPAAREVIYYSLAIGHHLGVIDCLKPYLSLPLSDYRAWIA 73 Query: 65 LVEEEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLLDEIV 124 +E +ARRK+ GV+ FGEI ID SH L A T QA S I L I Sbjct: 74 QLEAGEARRKLEGVLRFGEIGIDISHIHTLACALDRALPAMTPPQQAWSRSLIDALQLIE 133 Query: 125 QEPAIYLMARK 135 EP IYLM ++ Sbjct: 134 NEPTIYLMVKR 144 >UniRef50_Q20XP7 Processing of large subunit (HycE) of hydrogenase 3 n=1 Tax=Rhodopseudomonas palustris BisB18 RepID=Q20XP7_RHOPB Length = 133 Score = 178 bits (451), Expect = 6e-44, Method: Composition-based stats. Identities = 54/132 (40%), Positives = 75/132 (56%) Query: 5 CGEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLA 64 G+++F+ L K + ++P+ + QV+YYSLAIGHHVGV DC RC +E +A Sbjct: 2 SGDVIFYRLNAKIMERDGDIPDDAKQVIYYSLAIGHHVGVFDCFKPVLRCKAEFFERLVA 61 Query: 65 LVEEEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLLDEIV 124 + E +ARRK+ G+ FGEI ID SHT LL A ++ S + L I Sbjct: 62 AMPEGEARRKLDGLHRFGEITIDRSHTELLGAAIDQVSPSLDSESADWLRELGVSLAAIE 121 Query: 125 QEPAIYLMARKI 136 EPAIYLM R++ Sbjct: 122 AEPAIYLMGRRL 133 >UniRef50_Q2RGG7 Formate hydrogenlyase maturation HycH n=3 Tax=Firmicutes RepID=Q2RGG7_MOOTA Length = 146 Score = 172 bits (435), Expect = 5e-42, Method: Composition-based stats. Identities = 42/129 (32%), Positives = 66/129 (51%), Gaps = 1/129 (0%) Query: 6 GEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLAL 65 G + F+ L K+FV ++P Q+ YY+LAIGHH+GV+DCL Y W++ Sbjct: 3 GRVEFYKLCKRFVDE-KDVPAEVQQLEYYALAIGHHIGVVDCLASIMAMDKEAYFKWISK 61 Query: 66 VEEEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLLDEIVQ 125 + +AR K+ G+ +GE+ I+ H L A + + + LL + + Sbjct: 62 LPRGKARSKLEGLARWGELEINKEHVPALIAALEEANASFLPEEKQWTDCLLRLLYAMEK 121 Query: 126 EPAIYLMAR 134 EPAIYL+ R Sbjct: 122 EPAIYLVVR 130 >UniRef50_Q2C1Q4 HycH n=4 Tax=Vibrionaceae RepID=Q2C1Q4_9GAMM Length = 154 Score = 170 bits (431), Expect = 1e-41, Method: Composition-based stats. Identities = 52/130 (40%), Positives = 79/130 (60%), Gaps = 2/130 (1%) Query: 7 EIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALV 66 + F++L +KFV S ++PE + Q+MYYSLAIGHH+GV+DCL+ +C EY DW++ + Sbjct: 22 NVYFYSLGRKFVDESYDVPEEAKQIMYYSLAIGHHLGVVDCLDAVLKCSGHEYLDWISGL 81 Query: 67 EE-EQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQAR-SIQFIHLLDEIV 124 ++ +A RKM G + FGEI I H +L AF + S + + FI L +I Sbjct: 82 DQSGEAFRKMKGFLVFGEITIYPEHLNMLALAFDGIDSAIQSEKSKQLTHGFIEALGDIH 141 Query: 125 QEPAIYLMAR 134 +E +Y+M R Sbjct: 142 REQTMYMMIR 151 >UniRef50_Q1ZGP2 Formate hydrogenlyase maturation protein n=1 Tax=Psychromonas sp. CNPT3 RepID=Q1ZGP2_9GAMM Length = 186 Score = 169 bits (429), Expect = 2e-41, Method: Composition-based stats. Identities = 55/133 (41%), Positives = 81/133 (60%), Gaps = 2/133 (1%) Query: 4 ECGEIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWL 63 + G+++F+ L++KFV ++PE + QV+YY+LAIGHH+G++DCL VAF TEY+ W+ Sbjct: 52 DTGKVLFYALKRKFVDERFDVPEEAKQVLYYTLAIGHHLGIVDCLEVAFEATTTEYKKWV 111 Query: 64 ALV-EEEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSV-WQARSIQFIHLLD 121 L+ +A RKM+ TFGEI I H +L AF+ L S Q + FI +L Sbjct: 112 NLLDPSTEAHRKMIRYFTFGEITIYPDHIHMLACAFSALDKAKMSTKEQTMTDAFIKVLT 171 Query: 122 EIVQEPAIYLMAR 134 I E +Y+M R Sbjct: 172 AIYHEQTMYMMIR 184 >UniRef50_D0WGQ5 Formate hydrogenlyase maturation protein HycH n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WGQ5_9ACTN Length = 151 Score = 166 bits (420), Expect = 2e-40, Method: Composition-based stats. Identities = 42/129 (32%), Positives = 69/129 (53%) Query: 8 IVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALVE 67 + L +KFV S+ +P+ + V+YY+L++GHH GVIDC P+ +E A + Sbjct: 21 VRVHRLVRKFVDSAQSVPDDAKDVLYYTLSVGHHTGVIDCFECVLSMPVEVFERICATLP 80 Query: 68 EEQARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQFIHLLDEIVQEP 127 E +AR K+ GVM EI + + ++ A PLA A F+ L + +EP Sbjct: 81 EGEARYKLEGVMRHSEIELGKAQVDIVIDALEPLASAADEEVARYVGLFLEQLRIVREEP 140 Query: 128 AIYLMARKI 136 ++Y+M R++ Sbjct: 141 SVYVMVREV 149 >UniRef50_UPI0001912444 hydrogenase 3 large subunit processing protein n=2 Tax=Salmonella enterica subsp. enterica serovar Typhi RepID=UPI0001912444 Length = 120 Score = 145 bits (365), Expect = 5e-34, Method: Composition-based stats. Identities = 50/110 (45%), Positives = 63/110 (57%), Gaps = 1/110 (0%) Query: 7 EIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALV 66 ++VF L +KF+ +D P + QV+YYSLAIGHH+GVIDCL A CP EY W+A + Sbjct: 5 QVVFSQLSRKFIDENDATPAEAQQVVYYSLAIGHHLGVIDCLEAALTCPWDEYLAWIATL 64 Query: 67 EEE-QARRKMLGVMTFGEIVIDASHTALLTRAFAPLADDATSVWQARSIQ 115 E ARRKM GV +GEIVID +H +L RAF Sbjct: 65 EAGSDARRKMEGVPKYGEIVIDFNHVQMLARAFDEARAAHDPAAARMEQT 114 >UniRef50_C7MLM9 Formate hydrogenlyase maturation protein HycH n=1 Tax=Cryptobacterium curtum DSM 15641 RepID=C7MLM9_CRYCD Length = 165 Score = 143 bits (361), Expect = 2e-33, Method: Composition-based stats. Identities = 49/141 (34%), Positives = 73/141 (51%), Gaps = 13/141 (9%) Query: 8 IVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALVE 67 I F+ L +K V ++ +PE V+YY+LAIGHH GV+D P+ Y + L+E Sbjct: 23 ISFYLLTRKMVDNAKSIPEDVQDVLYYTLAIGHHTGVMDFFEERLSIPVESYRKIVDLME 82 Query: 68 EEQARRKMLGVMTFGEIVIDASHT-ALLTRAFAPLAD-DATSVWQARSI----------- 114 ++QARRK LGV FGEI + H +L A + L+ D + +SI Sbjct: 83 DDQARRKWLGVFKFGEIEVGKEHLSQVLPAARSALSHIDVFNEVGKKSISLTADEIDELS 142 Query: 115 QFIHLLDEIVQEPAIYLMARK 135 + + LL + E +YLM R+ Sbjct: 143 RLVELLLRVRSETNVYLMVRR 163 >UniRef50_A4E712 Putative uncharacterized protein n=1 Tax=Collinsella aerofaciens ATCC 25986 RepID=A4E712_9ACTN Length = 193 Score = 138 bits (348), Expect = 5e-32, Method: Composition-based stats. Identities = 39/147 (26%), Positives = 71/147 (48%), Gaps = 19/147 (12%) Query: 7 EIVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALV 66 ++VF+ L +KFV + +++P+ + V+YY+LA+GHH GV+DC P+ + + + Sbjct: 45 QVVFYELTRKFVETEEDVPQEACDVLYYTLAVGHHTGVLDCFEPRLSVPVDVFYSLVDAL 104 Query: 67 EEEQARRKMLGVMTFGEIVIDASHTALLT---------RAFAPLADDATSVWQ------A 111 E +A+ K + +FGE +D + L R F A SV+ A Sbjct: 105 PEGEAKTKFEAIRSFGECQLDKAAVPSLLEVCDALLDERGFRGSAKAGISVFDDDFGLHA 164 Query: 112 RSIQFIHLLDEIVQE----PAIYLMAR 134 + + F+ ++V+ +YL R Sbjct: 165 QQVAFLMKFRDLVERVRDVSGVYLTGR 191 >UniRef50_A0RMA1 Putative uncharacterized protein n=2 Tax=Campylobacter fetus RepID=A0RMA1_CAMFF Length = 113 Score = 113 bits (283), Expect = 2e-24, Method: Composition-based stats. Identities = 23/91 (25%), Positives = 39/91 (42%), Gaps = 1/91 (1%) Query: 8 IVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALVE 67 I W L K+ V + E+P+ Q++ +S +GH VG ID ++ L + Sbjct: 2 IQVWKLTKRHVDENAELPQIYKQIVTFSTCVGHGVGTIDFNEKIAEFDDEQWNKMLDSSD 61 Query: 68 EEQARRKMLGVMTFGEIVIDASHTALLTRAF 98 E + K+ V + E+ I H +L Sbjct: 62 E-YVKFKLGNVNKYFEVEILPVHAKVLKDKL 91 >UniRef50_A7ZBL6 Putative uncharacterized protein n=2 Tax=Epsilonproteobacteria RepID=A7ZBL6_CAMC1 Length = 114 Score = 106 bits (264), Expect = 2e-22, Method: Composition-based stats. Identities = 20/87 (22%), Positives = 40/87 (45%), Gaps = 1/87 (1%) Query: 8 IVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALVE 67 I + L K+ + ++++P ++ +S +GH VG ID E+++ + Sbjct: 2 IQVYKLTKRHMDDNEKLPRELKEIKIFSTCVGHGVGTIDFSEKVLELSDEEFDEMI-KNS 60 Query: 68 EEQARRKMLGVMTFGEIVIDASHTALL 94 E + K+ + + E+ I A H A L Sbjct: 61 GEYVKFKIGNLSKYFEVEIFAEHIARL 87 >UniRef50_D1B464 Putative uncharacterized protein n=5 Tax=Campylobacterales RepID=D1B464_SULD5 Length = 115 Score = 104 bits (259), Expect = 1e-21, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 35/87 (40%), Gaps = 1/87 (1%) Query: 8 IVFWTLRKKFVASSDEMPEHSSQVMYYSLAIGHHVGVIDCLNVAFRCPLTEYEDWLALVE 67 I + LRK+ + + Q+ +S IGH +G ID YE+ LA Sbjct: 2 IEVYQLRKRHLDGAKSGDAKLEQIKIFSTCIGHGIGTIDFSEKVLEIENEAYENILAG-G 60 Query: 68 EEQARRKMLGVMTFGEIVIDASHTALL 94 + + K+ + + EI I H L Sbjct: 61 GKYLKFKLGNLSKYFEIEIFPEHAQKL 87 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.313 0.140 0.388 Lambda K H 0.267 0.0431 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 777,691,437 Number of Sequences: 3077464 Number of extensions: 27225088 Number of successful extensions: 90693 Number of sequences better than 1.0e-01: 17 Number of HSP's better than 0.1 without gapping: 48 Number of HSP's successfully gapped in prelim test: 1 Number of HSP's that attempted gapping in prelim test: 90606 Number of HSP's gapped (non-prelim): 49 length of query: 137 length of database: 1,040,396,356 effective HSP length: 102 effective length of query: 35 effective length of database: 726,495,028 effective search space: 25427325980 effective search space used: 25427325980 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (20.9 bits) S2: 87 (38.0 bits)