28 d3prna_ Probab=94.85   E-value=0.21  Score=25.57  Aligned_columns=127  Identities=20%

Q ss_pred             CCCEEEEEEEECCCCCCEEEEEEEEECC---CCCCEEEEEEEEEECCCCEEEEEEEEEEEEECCCCC-CEEEEEEEEEEE
Q ss_conf             3209999976225776527865455268---887478768886404776788987766884025677-605788853788
Q batch____        29 GKEYTNIGVGFGTETTGLALSGNWTHND---DDGDVAGVGLGLNLPLGPLMATVGGKGVYTNPNYGD-EGYAAAVGGGLQ  104 (180)
Q Consensus        29 g~~~~~~~~~~~~~~~~~~~~~~~l~~d---~~~~~~~~gl~~~~~~g~l~~~vG~k~~~~~~~~~~-~g~ai~lG~~~~  104 (180)
                      .++.....+....+...+.+.+.|.+.+   .+......+..+....-.+.      +.+....... +.....+++.+.
T Consensus       158 ~~~~~~~~~~~~Y~~g~~~~~~~y~~~~~~~~~~~~~~~g~~y~~~~~~~~------~~~~~~~~~~~~~~~~~lg~~Y~  231 (289)
T d3prna_         158 SLVTEEFGIAADWSNDMISLAAAYTTDAGGIVDNDIAFVGAAYKFNDAGTV------GLNWYDNGLSTAGDQVTLYGNYA  231 (289)
T ss_dssp             GGSCCEEEEEEEEECSSEEEEEEEEESGGGCTTCCEEEEEEEECCSSSEEE------EEEEEECTTSTTCSEEEEEEEEE
T ss_pred             CCCCCEEEEEEEECCCCEEEEEEEEECCCCCCCCCEEEEEEEEEECCEEEE------EEEECCCCCCCCCEEEEEEEEEE
T ss_conf             666506899998135654999998511467776413677767862222788------88522456777630699999999


Q ss_pred             EECCCCEEEEEEEEECCCCCCCC-CCEEEEEEEEEEEEECCCEEEEEEEEEEEEEECCCCCEEEECCCEEEEEEEEC
Q ss_conf             65578549999999512100258-52489999899999805579999999999874078720442364499999839
Q batch____       105 WKIGNSFRLFGEYYYSPDSLSSG-IQSYEEANAGARYTIMRPVSIEAGYRYLNLSGKDGNRDNAVADGPYVGVNASF  180 (180)
Q Consensus       105 ~~~~~~~sl~g~~~yaP~~~s~g-~d~~~e~~agv~y~v~~~~~~~~GYr~~~~~~~~~~~~~~l~~g~~vG~~~~F  180 (180)
                      +   .++.+.+.....      + ......+.++++|++.|.++++.+|.+       ...+.+..+   ||+++.|
T Consensus       232 ~---g~~t~~a~y~~~------~~d~~~~~~~lg~~Y~l~~~~~l~~~~g~-------~~~~~t~a~---~Gv~~~F  289 (289)
T d3prna_         232 F---GATTVRAYVSDI------DRAGADTAYGIGADYQFAEGVKVSGSVQS-------GFANETVAD---VGVRFDF  289 (289)
T ss_dssp             E---TTEEEEEEEEEE------CSTTCCCEEEEEEEEEEETTEEEEEEEEE-------CTTCCEEEE---EEEEEEC
T ss_pred             E---CCEEEEEEEEEE------CCCCCCEEEEEEEEEECCCCEEEEEEEEE-------CCCCCCEEE---EEEEEEC
T ss_conf             1---670999999961------24664216999999956875799999874-------157750789---8799879