16/01/2012 20:19:47 : INFO  : Run start: Mon Jan 16 20:19:47 GMT 2012
16/01/2012 20:19:47 : INFO  : Initialised job
16/01/2012 20:19:47 : INFO  : Renaming log file 'phyre2_20120116_201947.log' to '/bmm/www/servers/phyre2/public_html/phyre2_output/4604dd69dfa4d403/phyre_20120116_201947.log'
16/01/2012 20:19:47 : INFO  : Initialised job:
Sequence
>batch____
MKKIALAGLAGMLLVSASVNAMSISGQAGKEYTNIGVGFGTETTGLALSGNWTHNDDDGD
VAGVGLGLNLPLGPLMATVGGKGVYTNPNYGDEGYAAAVGGGLQWKIGNSFRLFGEYYYS
PDSLSSGIQSYEEANAGARYTIMRPVSIEAGYRYLNLSGKDGNRDNAVADGPYVGVNASF


16/01/2012 20:19:47 : INFO  : Checked sequence
16/01/2012 20:19:47 : INFO  : Finding homologues with PSI-BLAST
16/01/2012 20:19:47 : INFO  : PSI-BLAST 3 iterations
16/01/2012 20:20:45 : INFO  : PSI-BLAST 5 iterations
16/01/2012 20:21:33 : INFO  : Finished PSI-BLAST
16/01/2012 20:21:33 : INFO  : Running Buildali to generate a3m file
16/01/2012 20:24:01 : INFO  : Converting to HMM
16/01/2012 20:24:01 : INFO  : Calibrating HMM
16/01/2012 20:24:05 : INFO  : Searching HMM database
16/01/2012 20:27:45 : INFO  : Finished buildali
16/01/2012 20:27:45 : INFO  : Predicting secondary structure
16/01/2012 20:27:45 : INFO  : Predicted secondary structure (PSI-Pred)
16/01/2012 20:27:45 : INFO  : Predicting Disordered regions
16/01/2012 20:27:45 : INFO  : Predicted Disorder (Disopred)
16/01/2012 20:27:45 : INFO  : Running memsat_svm check
16/01/2012 20:35:57 : INFO  : Globular protein
16/01/2012 20:35:57 : INFO  : Predicted Transmembrane (memsat_svm) ID '4604dd69dfa4d403'
16/01/2012 20:35:57 : INFO  : Initialising fold library search
16/01/2012 20:35:57 : INFO  : Initialised search input
16/01/2012 20:35:58 : INFO  : Building Ensemble models
16/01/2012 20:35:58 : INFO  : Building hh.d1qj8a_.model.1.pdb
16/01/2012 20:35:58 : INFO  : Building hh.c3qraA_.model.2.pdb
16/01/2012 20:35:59 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4604dd69dfa4d403/hh.c3qraA_.model.2.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4604dd69dfa4d403/c3qraA_.2.pdb
16/01/2012 20:35:59 : INFO  : Building hh.d1g90a_.model.3.pdb
16/01/2012 20:36:00 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4604dd69dfa4d403/hh.d1g90a_.model.3.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4604dd69dfa4d403/d1g90a_.3.pdb
16/01/2012 20:36:00 : INFO  : Building hh.c3nb3C_.model.4.pdb
16/01/2012 20:36:00 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4604dd69dfa4d403/hh.c3nb3C_.model.4.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4604dd69dfa4d403/c3nb3C_.4.pdb
16/01/2012 20:36:00 : INFO  : Building hh.c2k0lA_.model.5.pdb
16/01/2012 20:36:01 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4604dd69dfa4d403/hh.c2k0lA_.model.5.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4604dd69dfa4d403/c2k0lA_.5.pdb
16/01/2012 20:36:01 : INFO  : Building hh.d1qjpa_.model.6.pdb
16/01/2012 20:36:02 : INFO  : cpying /bmm/www/servers/phyre2/public_html/phyre2_output/4604dd69dfa4d403/hh.d1qjpa_.model.6.pdb to /bmm/www/servers/phyre2/public_html/phyre2_output/4604dd69dfa4d403/d1qjpa_.6.pdb
16/01/2012 20:36:02 : INFO  : Building d1qj8a_.1.pdb
16/01/2012 20:36:02 : INFO  : Building c3qraA_.2.pdb
16/01/2012 20:36:03 : INFO  : Building d1g90a_.3.pdb
16/01/2012 20:36:03 : INFO  : Building c3nb3C_.4.pdb
16/01/2012 20:36:04 : INFO  : Building c2k0lA_.5.pdb
16/01/2012 20:36:04 : INFO  : Building d1qjpa_.6.pdb
16/01/2012 20:36:04 : INFO  : Building d1p4ta_.7.pdb
16/01/2012 20:36:05 : INFO  : Building c2f1tB_.8.pdb
16/01/2012 20:36:05 : INFO  : Building c2x27X_.9.pdb
16/01/2012 20:36:06 : INFO  : Building c2lhfA_.10.pdb
16/01/2012 20:36:06 : INFO  : Building c2jmmA_.11.pdb
16/01/2012 20:36:06 : INFO  : Building d1osma_.12.pdb
16/01/2012 20:36:07 : INFO  : Building d1phoa_.13.pdb
16/01/2012 20:36:07 : INFO  : Building d2fgqx1.14.pdb
16/01/2012 20:36:07 : INFO  : Building d2zfga1.15.pdb
16/01/2012 20:36:08 : INFO  : Building c2x4mD_.16.pdb
16/01/2012 20:36:08 : INFO  : Building c3dwoX_.17.pdb
16/01/2012 20:36:08 : INFO  : Building c3nsgA_.18.pdb
16/01/2012 20:36:09 : INFO  : Building c3a2rX_.19.pdb
16/01/2012 20:36:09 : INFO  : Building d1i78a_.20.pdb
16/01/2012 20:36:16 : INFO  : Finished HH model building
16/01/2012 20:36:16 : WARN  : Set python to /bmm/www/servers/phyre2/bin//newpython/python2.6
16/01/2012 20:36:21 : INFO  : html domain output complete ID '4604dd69dfa4d403'
16/01/2012 21:04:15 : INFO  : Run end  : Mon Jan 16 21:04:15 GMT 2012
