Phyre 2 Results for P76471

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Email | l.a.kelley@imperial.ac.uk
Description | P76471
Date | Thu Jan 5 12:23:16 GMT 2012
Unique Job ID | 4604dd69dfa4d403

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template d1qj8a_
Top template information
Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein
Confidence and coverage
Confidence: | 99.4% | Coverage: | 71%
128 residues ( 71% of your sequence) have been modelled with 99.4% confidence by the single highest scoring template.
Additional confident templates have been detected (see Domain analysis) which cover other regions of your sequence.
167 residues ( 93%) could be modelled at >90% confidence using multiple-templates.
You may wish to try resubmitting your sequence in "intensive" mode to model more of your sequence.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | K | K | I | A | L | A | G | L | A | G | M | L | L | V | S | A | S | V | N | A | M | S | I | S | G | Q | A | G | K | E | Y | T | N | I | G | V | G | F | G | T | E | T | T | G | L | A | L | S | G | N | W | T | H | N | D | D | D | G | D
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  | ? | ? |  | ? | ? | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  | ? |  | ? | ? |  | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | V | A | G | V | G | L | G | L | N | L | P | L | G | P | L | M | A | T | V | G | G | K | G | V | Y | T | N | P | N | Y | G | D | E | G | Y | A | A | A | V | G | G | G | L | Q | W | K | I | G | N | S | F | R | L | F | G | E | Y | Y | Y | S
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  | ? |  | ? |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | P | D | S | L | S | S | G | I | Q | S | Y | E | E | A | N | A | G | A | R | Y | T | I | M | R | P | V | S | I | E | A | G | Y | R | Y | L | N | L | S | G | K | D | G | N | R | D | N | A | V | A | D | G | P | Y | V | G | V | N | A | S | F
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Sequence |
Secondary structure |
SS confidence |
Disorder |
Disorder confidence |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| d1qj8a_ |

### PDB 1qj8 chain A

Region: 46 - 180
Aligned: 128
Modelled: 135
Confidence: 99.4%
Identity: 17%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2
2 |
| c3qraA_ |

### PDB 3qra chain A

Region: 29 - 180
Aligned: 138
Modelled: 152
Confidence: 99.4%
Identity: 17%
PDB header:cell invasion
Chain: A: PDB Molecule:attachment invasion locus protein;
PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis

Phyre2
3 |
| d1g90a_ |

### PDB 1g90 chain A

Region: 29 - 180
Aligned: 151
Modelled: 152
Confidence: 99.3%
Identity: 13%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2
4 |
| c3nb3C_ |

### PDB 3nb3 chain C

Region: 41 - 180
Aligned: 125
Modelled: 140
Confidence: 99.3%
Identity: 14%
PDB header:virus
Chain: C: PDB Molecule:outer membrane protein a;
PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components

Phyre2
5 |
| c2k0lA_ |

### PDB 2k0l chain A

Region: 14 - 180
Aligned: 166
Modelled: 167
Confidence: 99.3%
Identity: 15%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles.

Phyre2
6 |
| d1qjpa_ |

### PDB 1qjp chain A

Region: 41 - 180
Aligned: 125
Modelled: 140
Confidence: 99.2%
Identity: 14%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2
7 |
| d1p4ta_ |

### PDB 1p4t chain A

Region: 55 - 180
Aligned: 125
Modelled: 126
Confidence: 99.2%
Identity: 13%
Fold: Transmembrane beta-barrels
Superfamily: OMPA-like
Family: Outer membrane protein

Phyre2
8 |
| c2f1tB_ |

### PDB 2f1t chain B

Region: 27 - 180
Aligned: 147
Modelled: 154
Confidence: 98.9%
Identity: 14%
PDB header:membrane protein
Chain: B: PDB Molecule:outer membrane protein w;
PDBTitle: outer membrane protein ompw

Phyre2
9 |
| c2x27X_ |

### PDB 2x27 chain X

Region: 16 - 180
Aligned: 164
Modelled: 165
Confidence: 98.9%
Identity: 12%
PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein oprg;
PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa

Phyre2
10 |
| c2lhfA_ |

### PDB 2lhf chain A

Region: 59 - 180
Aligned: 122
Modelled: 122
Confidence: 98.8%
Identity: 21%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein h1;
PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles

Phyre2
11 |
| c2jmmA_ |

### PDB 2jmm chain A

Region: 41 - 180
Aligned: 134
Modelled: 136
Confidence: 98.6%
Identity: 13%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein a;
PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein

Phyre2
12 |
| d1osma_ |

### PDB 1osm chain A

Region: 55 - 180
Aligned: 126
Modelled: 126
Confidence: 98.3%
Identity: 15%
Fold: Transmembrane beta-barrels
Superfamily: Porins
Family: Porin

Phyre2
13 |
| d1phoa_ |

### PDB 1pho chain A

Region: 29 - 180
Aligned: 151
Modelled: 152
Confidence: 98.2%
Identity: 16%
Fold: Transmembrane beta-barrels
Superfamily: Porins
Family: Porin

Phyre2
14 |
| d2fgqx1 |

### PDB 2fgq chain X domain 1

Region: 34 - 180
Aligned: 145
Modelled: 147
Confidence: 98.1%
Identity: 14%
Fold: Transmembrane beta-barrels
Superfamily: Porins
Family: Porin

Phyre2
15 |
| d2zfga1 |

### PDB 2zfg chain A domain 1

Region: 34 - 180
Aligned: 146
Modelled: 147
Confidence: 98.1%
Identity: 17%
Fold: Transmembrane beta-barrels
Superfamily: Porins
Family: Porin

Phyre2
16 |
| c2x4mD_ |

### PDB 2x4m chain D

Region: 45 - 180
Aligned: 134
Modelled: 136
Confidence: 97.7%
Identity: 21%
PDB header:hydrolase
Chain: D: PDB Molecule:coagulase/fibrinolysin;
PDBTitle: yersinia pestis plasminogen activator pla

Phyre2
17 |
| c3dwoX_ |

### PDB 3dwo chain X

Region: 23 - 180
Aligned: 157
Modelled: 158
Confidence: 97.5%
Identity: 17%
PDB header:membrane protein
Chain: X: PDB Molecule:probable outer membrane protein;
PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue

Phyre2
18 |
| c3nsgA_ |

### PDB 3nsg chain A

Region: 34 - 180
Aligned: 147
Modelled: 146
Confidence: 97.4%
Identity: 15%
PDB header:membrane protein
Chain: A: PDB Molecule:outer membrane protein f;
PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi

Phyre2
19 |
| c3a2rX_ |

### PDB 3a2r chain X

Region: 34 - 180
Aligned: 144
Modelled: 147
Confidence: 97.3%
Identity: 15%
PDB header:membrane protein
Chain: X: PDB Molecule:outer membrane protein ii;
PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis

Phyre2
20 |
| d1i78a_ |

### PDB 1i78 chain A

Region: 46 - 180
Aligned: 133
Modelled: 135
Confidence: 97.2%
Identity: 18%
Fold: Transmembrane beta-barrels
Superfamily: OMPT-like
Family: Outer membrane protease OMPT

Phyre2
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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | d1qj8a_ |
|  | 99.4 | 17 | Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein
2 | c3qraA_ |
|  | 99.4 | 17 | PDB header:cell invasion Chain: A: PDB Molecule:attachment invasion locus protein; PDBTitle: the crystal structure of ail, the attachment invasion locus protein of2 yersinia pestis
3 | d1g90a_ |
|  | 99.3 | 13 | Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein
4 | c3nb3C_ |
|  | 99.3 | 14 | PDB header:virus Chain: C: PDB Molecule:outer membrane protein a; PDBTitle: the host outer membrane proteins ompa and ompc are packed at specific2 sites in the shigella phage sf6 virion as structural components
5 | c2k0lA_ |
|  | 99.3 | 15 | PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr structure of the transmembrane domain of the outer2 membrane protein a from klebsiella pneumoniae in dhpc3 micelles.
6 | d1qjpa_ |
|  | 99.2 | 14 | Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein
7 | d1p4ta_ |
|  | 99.2 | 13 | Fold:Transmembrane beta-barrels Superfamily:OMPA-like Family:Outer membrane protein
8 | c2f1tB_ |
|  | 98.9 | 14 | PDB header:membrane protein Chain: B: PDB Molecule:outer membrane protein w; PDBTitle: outer membrane protein ompw
9 | c2x27X_ |
|  | 98.9 | 12 | PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein oprg; PDBTitle: crystal structure of the outer membrane protein oprg from2 pseudomonas aeruginosa
10 | c2lhfA_ |
|  | 98.8 | 21 | PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein h1; PDBTitle: solution structure of outer membrane protein h (oprh) from p.2 aeruginosa in dhpc micelles
11 | c2jmmA_ |
|  | 98.6 | 13 | PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein a; PDBTitle: nmr solution structure of a minimal transmembrane beta-2 barrel platform protein
12 | d1osma_ |
|  | 98.3 | 15 | Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin
13 | d1phoa_ |
|  | 98.2 | 16 | Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin
14 | d2fgqx1 |
|  | 98.1 | 14 | Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin
15 | d2zfga1 |
|  | 98.1 | 17 | Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin
16 | c2x4mD_ |
|  | 97.7 | 21 | PDB header:hydrolase Chain: D: PDB Molecule:coagulase/fibrinolysin; PDBTitle: yersinia pestis plasminogen activator pla
17 | c3dwoX_ |
|  | 97.5 | 17 | PDB header:membrane protein Chain: X: PDB Molecule:probable outer membrane protein; PDBTitle: crystal structure of a pseudomonas aeruginosa fadl homologue
18 | c3nsgA_ |
|  | 97.4 | 15 | PDB header:membrane protein Chain: A: PDB Molecule:outer membrane protein f; PDBTitle: crystal structure of ompf, an outer membrane protein from salmonella2 typhi
19 | c3a2rX_ |
|  | 97.3 | 15 | PDB header:membrane protein Chain: X: PDB Molecule:outer membrane protein ii; PDBTitle: crystal structure of outer membrane protein porb from neisseria2 meningitidis
20 | d1i78a_ |
|  | 97.2 | 18 | Fold:Transmembrane beta-barrels Superfamily:OMPT-like Family:Outer membrane protease OMPT
21 | d1t16a_ |
| not modelled | 97.2 | 16 | Fold:Transmembrane beta-barrels Superfamily:Porins Family:Outer membrane protein transport protein
22 | c3aehB_ |
| not modelled | 96.7 | 11 | PDB header:hydrolase Chain: B: PDB Molecule:hemoglobin-binding protease hbp autotransporter; PDBTitle: integral membrane domain of autotransporter hbp
23 | c3bryB_ |
| not modelled | 96.5 | 18 | PDB header:transport protein Chain: B: PDB Molecule:tbux; PDBTitle: crystal structure of the ralstonia pickettii toluene2 transporter tbux
24 | d1uynx_ |
| not modelled | 96.2 | 20 | Fold:Transmembrane beta-barrels Superfamily:Autotransporter Family:Autotransporter
25 | c3brzA_ |
| not modelled | 95.7 | 12 | PDB header:transport protein Chain: A: PDB Molecule:todx; PDBTitle: crystal structure of the pseudomonas putida toluene2 transporter todx
26 | c3qq2C_ |
| not modelled | 95.4 | 14 | PDB header:membrane protein/protein transport Chain: C: PDB Molecule:brka autotransporter; PDBTitle: crystal structure of the beta domain of the bordetella autotransporter2 brka
27 | c3sljA_ |
| not modelled | 95.3 | 13 | PDB header:protein transport Chain: A: PDB Molecule:serine protease espp; PDBTitle: pre-cleavage structure of the autotransporter espp - n1023a mutant
28 | d3prna_ |
| not modelled | 94.9 | 20 | Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin
29 | c2iwvD_ |
| not modelled | 93.2 | 16 | PDB header:ion channel Chain: D: PDB Molecule:outer membrane protein g; PDBTitle: structure of the monomeric outer membrane porin ompg in the2 open and closed conformation
30 | c2wjqA_ |
| not modelled | 92.2 | 14 | PDB header:transport protein Chain: A: PDB Molecule:probable n-acetylneuraminic acid outer membrane channel PDBTitle: nanc porin structure in hexagonal crystal form.
31 | c2qomB_ |
| not modelled | 91.9 | 10 | PDB header:hydrolase Chain: B: PDB Molecule:serine protease espp; PDBTitle: the crystal structure of the e.coli espp autotransporter beta-domain.
32 | c2o4vA_ |
| not modelled | 90.8 | 16 | PDB header:membrane protein Chain: A: PDB Molecule:porin p; PDBTitle: an arginine ladder in oprp mediates phosphate specific transfer across2 the outer membrane
33 | c2odjA_ |
| not modelled | 88.5 | 12 | PDB header:membrane protein Chain: A: PDB Molecule:porin d; PDBTitle: crystal structure of the outer membrane protein oprd from pseudomonas2 aeruginosa
34 | d2pora_ |
| not modelled | 87.7 | 13 | Fold:Transmembrane beta-barrels Superfamily:Porins Family:Porin
35 | c3kvnA_ |
| not modelled | 87.1 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:esterase esta; PDBTitle: crystal structure of the full-length autotransporter esta from2 pseudomonas aeruginosa
36 | c2hdiA_ |
| not modelled | 83.7 | 20 | PDB header:protein transport,antimicrobial protein Chain: A: PDB Molecule:colicin i receptor; PDBTitle: crystal structure of the colicin i receptor cir from e.coli in complex2 with receptor binding domain of colicin ia.
37 | c3rbhC_ |
| not modelled | 57.7 | 13 | PDB header:transport protein Chain: C: PDB Molecule:alginate production protein alge; PDBTitle: structure of alginate export protein alge from pseudomonas aeruginosa
38 | c2y0hA_ |
| not modelled | 38.2 | 16 | PDB header:transport protein Chain: A: PDB Molecule:probable porin; PDBTitle: crystal structure of pseudomonas aeruginosa opdl
39 | c2iahA_ |
| not modelled | 34.8 | 13 | PDB header:membrane protein Chain: A: PDB Molecule:ferripyoverdine receptor; PDBTitle: crystal structure of the ferripyoverdine receptor of the outer2 membrane of pseudomonas aeruginosa bound to ferripyoverdine.
40 | c2ervA_ |
| not modelled | 32.5 | 16 | PDB header:membrane protein Chain: A: PDB Molecule:hypothetical protein paer03002360; PDBTitle: crystal structure of the outer membrane enzyme pagl
41 | c3efmA_ |
| not modelled | 31.6 | 18 | PDB header:membrane protein Chain: A: PDB Molecule:ferric alcaligin siderophore receptor; PDBTitle: structure of the alcaligin outer membrane recepteur faua from2 bordetella pertussis
42 | c1xkwA_ |
| not modelled | 28.5 | 20 | PDB header:membrane protein Chain: A: PDB Molecule:fe(iii)-pyochelin receptor; PDBTitle: pyochelin outer membrane receptor fpta from pseudomonas2 aeruginosa
43 | d2jnaa1 |
| not modelled | 28.3 | 33 | Fold:Dodecin subunit-like Superfamily:YdgH-like Family:YdgH-like
44 | c2k4tA_ |
| not modelled | 21.0 | 18 | PDB header:membrane protein,apoptosis Chain: A: PDB Molecule:voltage-dependent anion-selective channel PDBTitle: solution structure of human vdac-1 in ldao micelles
45 | c2vdaB_ |
| not modelled | 17.7 | 30 | PDB header:protein transport Chain: B: PDB Molecule:maltoporin; PDBTitle: solution structure of the seca-signal peptide complex
46 | c2nncB_ |
| not modelled | 15.9 | 13 | PDB header:ligand binding protein Chain: B: PDB Molecule:sulfur covalently-binding protein; PDBTitle: structure of the sulfur carrier protein soxy from chlorobium limicola2 f thiosulfatophilum
47 | d1of5b_ |
| not modelled | 14.2 | 29 | Fold:Cystatin-like Superfamily:NTF2-like Family:NTF2-like
48 | c3fhhA_ |
| not modelled | 13.6 | 11 | PDB header:membrane protein Chain: A: PDB Molecule:outer membrane heme receptor shua; PDBTitle: crystal structure of the heme/hemoglobin outer membrane2 transporter shua from shigella dysenteriae
49 | c3jtyB_ |
| not modelled | 12.6 | 11 | PDB header:transport protein Chain: B: PDB Molecule:benf-like porin; PDBTitle: crystal structure of a benf-like porin from pseudomonas fluorescens2 pf-5
50 | c2y0lA_ |
| not modelled | 9.1 | 11 | PDB header:transport protein Chain: A: PDB Molecule:cis-aconitate porin opdh; PDBTitle: crystal structure of pseudomonas aeruginosa opdo
51 | d2gufa1 |
| not modelled | 7.8 | 21 | Fold:Transmembrane beta-barrels Superfamily:Porins Family:Ligand-gated protein channel

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
Disclaimer
Terms and Conditions
Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0