Phyre 2 Results for P32701

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Email | l.a.kelley@imperial.ac.uk
Description | P32701
Date | Thu Jan 5 11:50:21 GMT 2012
Unique Job ID | 45dcf1aa1162ee56

Summary |

Top model
Image coloured by rainbow N → C terminus
| Close Jmol

Model (left) based on template c3pjwA_
Top template information
PDB header:lyase Chain: A: PDB Molecule:cyclic dimeric gmp binding protein; PDBTitle: structure of pseudomonas fluorescence lapd ggdef-eal dual domain, i23
Confidence and coverage
Confidence: | 100.0% | Coverage: | 79%
416 residues ( 79% of your sequence) have been modelled with 100.0% confidence by the single highest scoring template.
3D viewing
Interactive 3D view in Jmol

Sequence analysis |

Secondary structure and disorder prediction |

|  | 1 | . | . | . | . | . | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60
Sequence |  | M | S | H | R | A | R | H | Q | L | L | A | L | P | G | I | I | F | L | V | L | F | P | I | I | L | S | L | W | I | A | F | L | W | A | K | S | E | V | N | N | Q | L | R | T | F | A | Q | L | A | L | D | K | S | E | L | V | I | R | Q | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120
Sequence |  | D | L | V | S | D | A | A | E | R | Y | Q | G | Q | V | C | T | P | A | H | Q | K | R | M | L | N | I | I | R | G | Y | L | Y | I | N | E | L | I | Y | A | R | D | N | H | F | L | C | S | S | L | I | A | P | V | N | G | Y | T | I | A | P
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . | . | . | . | 170 | . | . | . | . | . | . | . | . | . | 180
Sequence |  | A | D | Y | K | R | E | P | N | V | S | I | Y | Y | Y | R | D | T | P | F | F | S | G | Y | K | M | T | Y | M | Q | R | G | N | Y | V | A | V | I | N | P | L | F | W | S | E | V | M | S | D | D | P | T | L | Q | W | G | V | Y | D | T | V
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  | ? | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . | . | . | 220 | . | . | . | . | . | . | . | . | . | 230 | . | . | . | . | . | . | . | . | . | 240
Sequence |  | T | K | T | F | F | S | L | S | K | E | A | S | A | A | T | F | S | P | L | I | H | L | K | D | L | T | V | Q | R | N | G | Y | L | Y | A | T | V | Y | S | T | K | R | P | I | A | A | I | V | A | T | S | Y | Q | R | L | I | T | H | F | Y
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 250 | . | . | . | . | . | . | . | . | . | 260 | . | . | . | . | . | . | . | . | . | 270 | . | . | . | . | . | . | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300
Sequence |  | N | H | L | I | F | A | L | P | A | G | I | L | G | S | L | V | L | L | L | L | W | L | R | I | R | Q | N | Y | L | S | P | K | R | K | L | Q | R | A | L | E | K | H | Q | L | C | L | Y | Y | Q | P | I | I | D | I | K | T | E | K | C | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | . | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . | . | . | . | . | . | 350 | . | . | . | . | . | . | . | . | . | 360
Sequence |  | G | A | E | A | L | L | R | W | P | G | E | Q | G | Q | I | M | N | P | A | E | F | I | P | L | A | E | K | E | G | M | I | E | Q | I | T | D | Y | V | I | D | N | V | F | R | D | L | G | D | Y | L | A | T | H | A | D | R | Y | V | S | I
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 370 | . | . | . | . | . | . | . | . | . | 380 | . | . | . | . | . | . | . | . | . | 390 | . | . | . | . | . | . | . | . | . | 400 | . | . | . | . | . | . | . | . | . | 410 | . | . | . | . | . | . | . | . | . | 420
Sequence |  | N | L | S | A | S | D | F | H | T | S | R | L | I | A | R | I | N | Q | K | T | E | Q | Y | A | V | R | P | Q | Q | I | K | F | E | V | T | E | H | A | F | L | D | V | D | K | M | T | P | I | I | L | A | F | R | Q | A | G | Y | E | V | A
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 430 | . | . | . | . | . | . | . | . | . | 440 | . | . | . | . | . | . | . | . | . | 450 | . | . | . | . | . | . | . | . | . | 460 | . | . | . | . | . | . | . | . | . | 470 | . | . | . | . | . | . | . | . | . | 480
Sequence |  | I | D | D | F | G | I | G | Y | S | N | L | H | N | L | K | S | L | N | V | D | I | L | K | I | D | K | S | F | V | E | T | L | T | T | H | K | T | S | H | L | I | A | E | H | I | I | E | L | A | H | S | L | G | L | K | T | I | A | E | G
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | . | . | . | . | . | . | . | . | . | 490 | . | . | . | . | . | . | . | . | . | 500 | . | . | . | . | . | . | . | . | . | 510 | . | . | . | . | . | . | . | . | . | 520 | . | . | . | . | . | . | . | .
Sequence |  | V | E | T | E | E | Q | V | N | W | L | R | K | R | G | V | R | Y | C | Q | G | W | F | F | A | K | A | M | P | P | Q | V | F | M | Q | W | M | E | Q | L | P | A | R | E | L | T | R | G | Q
Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Disorder |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | ? | ? | ? | ? | ? | ? | ? | ? | ?
Disorder confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |

Confidence Key
High(9) |  |  |  |  |  |  |  |  |  |  | Low (0)

? | Disordered
| Alpha helix
| Beta strand

Domain analysis |

Hover over an aligned region to see model and summary info

Please note, only up to the top 20 hits are modelled to reduce computer load

Rank | Aligned region
--- | ---
1 |
| c3pjwA_ |

### PDB 3pjw chain A

Region: 81 - 509
Aligned: 416
Modelled: 427
Confidence: 100.0%
Identity: 18%
PDB header:lyase
Chain: A: PDB Molecule:cyclic dimeric gmp binding protein;
PDBTitle: structure of pseudomonas fluorescence lapd ggdef-eal dual domain, i23

Phyre2
2 |
| c3gfzB_ |

### PDB 3gfz chain B

Region: 96 - 506
Aligned: 368
Modelled: 384
Confidence: 100.0%
Identity: 21%
PDB header:hydrolase, signaling protein
Chain: B: PDB Molecule:klebsiella pneumoniae blrp1;
PDBTitle: klebsiella pneumoniae blrp1 ph 6 manganese/cy-digmp complex

Phyre2
3 |
| c3hvbB_ |

### PDB 3hvb chain B

Region: 267 - 512
Aligned: 245
Modelled: 246
Confidence: 100.0%
Identity: 25%
PDB header:hydrolase
Chain: B: PDB Molecule:protein fimx;
PDBTitle: crystal structure of the dual-domain ggdef-eal module of2 fimx from pseudomonas aeruginosa

Phyre2
4 |
| c3hv9A_ |

### PDB 3hv9 chain A

Region: 260 - 512
Aligned: 252
Modelled: 253
Confidence: 100.0%
Identity: 25%
PDB header:hydrolase
Chain: A: PDB Molecule:protein fimx;
PDBTitle: crystal structure of fimx eal domain from pseudomonas aeruginosa

Phyre2
5 |
| c3s83A_ |

### PDB 3s83 chain A

Region: 269 - 523
Aligned: 252
Modelled: 255
Confidence: 100.0%
Identity: 31%
PDB header:signaling protein
Chain: A: PDB Molecule:ggdef family protein;
PDBTitle: crystal structure of eal domain from caulobacter crescentus cb15

Phyre2
6 |
| c3pfmA_ |

### PDB 3pfm chain A

Region: 266 - 509
Aligned: 239
Modelled: 244
Confidence: 100.0%
Identity: 26%
PDB header:signaling protein
Chain: A: PDB Molecule:ggdef domain protein;
PDBTitle: crystal structure of a eal domain of ggdef domain protein from2 pseudomonas fluorescens pf

Phyre2
7 |
| c2w27A_ |

### PDB 2w27 chain A

Region: 274 - 508
Aligned: 227
Modelled: 235
Confidence: 100.0%
Identity: 23%
PDB header:signaling protein
Chain: A: PDB Molecule:ykui protein;
PDBTitle: crystal structure of the bacillus subtilis ykui protein,2 with an eal domain, in complex with substrate c-di-gmp and3 calcium

Phyre2
8 |
| c2r6oB_ |

### PDB 2r6o chain B

Region: 269 - 522
Aligned: 241
Modelled: 241
Confidence: 100.0%
Identity: 32%
PDB header:structural genomics, unknown function
Chain: B: PDB Molecule:putative diguanylate cyclase/phosphodiesterase (ggdef & eal
PDBTitle: crystal structure of putative diguanylate cyclase/phosphodiesterase2 from thiobacillus denitrificans

Phyre2
9 |
| d2basa1 |

### PDB 2bas chain A domain 1

Region: 274 - 519
Aligned: 241
Modelled: 246
Confidence: 100.0%
Identity: 20%
Fold: TIM beta/alpha-barrel
Superfamily: EAL domain-like
Family: EAL domain

Phyre2
10 |
| c3kzpA_ |

### PDB 3kzp chain A

Region: 283 - 508
Aligned: 221
Modelled: 226
Confidence: 100.0%
Identity: 19%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:putative diguanylate cyclase/phosphodiesterase;
PDBTitle: crystal structure of putative diguanylate cyclase/phosphodiesterase2 from listaria monocytigenes

Phyre2
11 |
| c1w25B_ |

### PDB 1w25 chain B

Region: 78 - 259
Aligned: 182
Modelled: 182
Confidence: 99.5%
Identity: 9%
PDB header:signaling protein
Chain: B: PDB Molecule:stalked-cell differentiation controlling protein;
PDBTitle: response regulator pled in complex with c-digmp

Phyre2
12 |
| c3ezuA_ |

### PDB 3ezu chain A

Region: 79 - 256
Aligned: 173
Modelled: 178
Confidence: 99.4%
Identity: 10%
PDB header:signaling protein
Chain: A: PDB Molecule:ggdef domain protein;
PDBTitle: crystal structure of multidomain protein of unknown function with2 ggdef-domain (np_951600.1) from geobacter sulfurreducens at 1.95 a3 resolution

Phyre2
13 |
| c3breA_ |

### PDB 3bre chain A

Region: 54 - 258
Aligned: 205
Modelled: 205
Confidence: 99.3%
Identity: 11%
PDB header:signaling protein
Chain: A: PDB Molecule:probable two-component response regulator;
PDBTitle: crystal structure of p.aeruginosa pa3702

Phyre2
14 |
| c3iclA_ |

### PDB 3icl chain A

Region: 100 - 259
Aligned: 160
Modelled: 160
Confidence: 99.2%
Identity: 9%
PDB header:structural genomics, unknown function
Chain: A: PDB Molecule:eal/ggdef domain protein;
PDBTitle: x-ray structure of protein (eal/ggdef domain protein) from2 m.capsulatus, northeast structural genomics consortium3 target mcr174c

Phyre2
15 |
| c3i5cA_ |

### PDB 3i5c chain A

Region: 77 - 256
Aligned: 180
Modelled: 180
Confidence: 99.1%
Identity: 8%
PDB header:signaling protein
Chain: A: PDB Molecule:fusion of general control protein gcn4 and wspr response
PDBTitle: crystal structure of a fusion protein containing the leucine zipper of2 gcn4 and the ggdef domain of wspr from pseudomonas aeruginosa

Phyre2
16 |
| c3ignA_ |

### PDB 3ign chain A

Region: 95 - 256
Aligned: 162
Modelled: 158
Confidence: 99.1%
Identity: 9%
PDB header:transferase
Chain: A: PDB Molecule:diguanylate cyclase;
PDBTitle: crystal structure of the ggdef domain from marinobacter2 aquaeolei diguanylate cyclase complexed with c-di-gmp -3 northeast structural genomics consortium target mqr89a

Phyre2
17 |
| c3i5aA_ |

### PDB 3i5a chain A

Region: 54 - 255
Aligned: 202
Modelled: 202
Confidence: 99.1%
Identity: 10%
PDB header:signaling protein
Chain: A: PDB Molecule:response regulator/ggdef domain protein;
PDBTitle: crystal structure of full-length wpsr from pseudomonas syringae

Phyre2
18 |
| c3i5bA_ |

### PDB 3i5b chain A

Region: 96 - 258
Aligned: 163
Modelled: 163
Confidence: 99.1%
Identity: 10%
PDB header:signaling protein
Chain: A: PDB Molecule:wspr response regulator;
PDBTitle: crystal structure of the isolated ggdef domain of wpsr from2 pseudomonas aeruginosa

Phyre2
19 |
| c3hvaA_ |

### PDB 3hva chain A

Region: 96 - 254
Aligned: 159
Modelled: 159
Confidence: 99.1%
Identity: 9%
PDB header:transferase
Chain: A: PDB Molecule:protein fimx;
PDBTitle: crystal structure of fimx ggdef domain from pseudomonas2 aeruginosa

Phyre2
20 |
| c3mtkA_ |

### PDB 3mtk chain A

Region: 93 - 259
Aligned: 158
Modelled: 167
Confidence: 99.0%
Identity: 8%
PDB header:transferase
Chain: A: PDB Molecule:diguanylate cyclase/phosphodiesterase;
PDBTitle: x-ray structure of diguanylate cyclase/phosphodiesterase from2 caldicellulosiruptor saccharolyticus, northeast structural genomics3 consortium target clr27c

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Detailed template information |

# | Template | Alignment Coverage | 3D Model | Confidence | % i.d. | Template Information
--- | --- | --- | --- | --- | --- | ---
1 | c3pjwA_ |
|  | 100.0 | 18 | PDB header:lyase Chain: A: PDB Molecule:cyclic dimeric gmp binding protein; PDBTitle: structure of pseudomonas fluorescence lapd ggdef-eal dual domain, i23
2 | c3gfzB_ |
|  | 100.0 | 21 | PDB header:hydrolase, signaling protein Chain: B: PDB Molecule:klebsiella pneumoniae blrp1; PDBTitle: klebsiella pneumoniae blrp1 ph 6 manganese/cy-digmp complex
3 | c3hvbB_ |
|  | 100.0 | 25 | PDB header:hydrolase Chain: B: PDB Molecule:protein fimx; PDBTitle: crystal structure of the dual-domain ggdef-eal module of2 fimx from pseudomonas aeruginosa
4 | c3hv9A_ |
|  | 100.0 | 25 | PDB header:hydrolase Chain: A: PDB Molecule:protein fimx; PDBTitle: crystal structure of fimx eal domain from pseudomonas aeruginosa
5 | c3s83A_ |
|  | 100.0 | 31 | PDB header:signaling protein Chain: A: PDB Molecule:ggdef family protein; PDBTitle: crystal structure of eal domain from caulobacter crescentus cb15
6 | c3pfmA_ |
|  | 100.0 | 26 | PDB header:signaling protein Chain: A: PDB Molecule:ggdef domain protein; PDBTitle: crystal structure of a eal domain of ggdef domain protein from2 pseudomonas fluorescens pf
7 | c2w27A_ |
|  | 100.0 | 23 | PDB header:signaling protein Chain: A: PDB Molecule:ykui protein; PDBTitle: crystal structure of the bacillus subtilis ykui protein,2 with an eal domain, in complex with substrate c-di-gmp and3 calcium
8 | c2r6oB_ |
|  | 100.0 | 32 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:putative diguanylate cyclase/phosphodiesterase (ggdef & eal PDBTitle: crystal structure of putative diguanylate cyclase/phosphodiesterase2 from thiobacillus denitrificans
9 | d2basa1 |
|  | 100.0 | 20 | Fold:TIM beta/alpha-barrel Superfamily:EAL domain-like Family:EAL domain
10 | c3kzpA_ |
|  | 100.0 | 19 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative diguanylate cyclase/phosphodiesterase; PDBTitle: crystal structure of putative diguanylate cyclase/phosphodiesterase2 from listaria monocytigenes
11 | c1w25B_ |
|  | 99.5 | 9 | PDB header:signaling protein Chain: B: PDB Molecule:stalked-cell differentiation controlling protein; PDBTitle: response regulator pled in complex with c-digmp
12 | c3ezuA_ |
|  | 99.4 | 10 | PDB header:signaling protein Chain: A: PDB Molecule:ggdef domain protein; PDBTitle: crystal structure of multidomain protein of unknown function with2 ggdef-domain (np_951600.1) from geobacter sulfurreducens at 1.95 a3 resolution
13 | c3breA_ |
|  | 99.3 | 11 | PDB header:signaling protein Chain: A: PDB Molecule:probable two-component response regulator; PDBTitle: crystal structure of p.aeruginosa pa3702
14 | c3iclA_ |
|  | 99.2 | 9 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:eal/ggdef domain protein; PDBTitle: x-ray structure of protein (eal/ggdef domain protein) from2 m.capsulatus, northeast structural genomics consortium3 target mcr174c
15 | c3i5cA_ |
|  | 99.1 | 8 | PDB header:signaling protein Chain: A: PDB Molecule:fusion of general control protein gcn4 and wspr response PDBTitle: crystal structure of a fusion protein containing the leucine zipper of2 gcn4 and the ggdef domain of wspr from pseudomonas aeruginosa
16 | c3ignA_ |
|  | 99.1 | 9 | PDB header:transferase Chain: A: PDB Molecule:diguanylate cyclase; PDBTitle: crystal structure of the ggdef domain from marinobacter2 aquaeolei diguanylate cyclase complexed with c-di-gmp -3 northeast structural genomics consortium target mqr89a
17 | c3i5aA_ |
|  | 99.1 | 10 | PDB header:signaling protein Chain: A: PDB Molecule:response regulator/ggdef domain protein; PDBTitle: crystal structure of full-length wpsr from pseudomonas syringae
18 | c3i5bA_ |
|  | 99.1 | 10 | PDB header:signaling protein Chain: A: PDB Molecule:wspr response regulator; PDBTitle: crystal structure of the isolated ggdef domain of wpsr from2 pseudomonas aeruginosa
19 | c3hvaA_ |
|  | 99.1 | 9 | PDB header:transferase Chain: A: PDB Molecule:protein fimx; PDBTitle: crystal structure of fimx ggdef domain from pseudomonas2 aeruginosa
20 | c3mtkA_ |
|  | 99.0 | 8 | PDB header:transferase Chain: A: PDB Molecule:diguanylate cyclase/phosphodiesterase; PDBTitle: x-ray structure of diguanylate cyclase/phosphodiesterase from2 caldicellulosiruptor saccharolyticus, northeast structural genomics3 consortium target clr27c
21 | d1w25a3 |
| not modelled | 99.0 | 9 | Fold:Ferredoxin-like Superfamily:Nucleotide cyclase Family:GGDEF domain
22 | c3qyyB_ |
| not modelled | 99.0 | 8 | PDB header:signaling protein/inhibitor Chain: B: PDB Molecule:response regulator; PDBTitle: a novel interaction mode between a microbial ggdef domain and the bis-2 (3, 5 )-cyclic di-gmp
23 | c3hvwA_ |
| not modelled | 98.5 | 8 | PDB header:lyase Chain: A: PDB Molecule:diguanylate-cyclase (dgc); PDBTitle: crystal structure of the ggdef domain of the pa2567 protein2 from pseudomonas aeruginosa, northeast structural genomics3 consortium target par365c
24 | c3khtA_ |
| not modelled | 95.1 | 9 | PDB header:signaling protein Chain: A: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator from hahella chejuensis
25 | d1mvoa_ |
| not modelled | 94.7 | 13 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
26 | c3hebB_ |
| not modelled | 94.7 | 19 | PDB header:transcription regulator Chain: B: PDB Molecule:response regulator receiver domain protein (chey); PDBTitle: crystal structure of response regulator receiver domain from2 rhodospirillum rubrum
27 | d1p6qa_ |
| not modelled | 94.5 | 13 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
28 | c2p0oA_ |
| not modelled | 94.3 | 18 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:hypothetical protein duf871; PDBTitle: crystal structure of a conserved protein from locus ef_2437 in2 enterococcus faecalis with an unknown function
29 | c2zayA_ |
| not modelled | 93.9 | 14 | PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator from desulfuromonas2 acetoxidans
30 | c2pz0B_ |
| not modelled | 93.2 | 15 | PDB header:hydrolase Chain: B: PDB Molecule:glycerophosphoryl diester phosphodiesterase; PDBTitle: crystal structure of glycerophosphodiester phosphodiesterase (gdpd)2 from t. tengcongensis
31 | d1zesa1 |
| not modelled | 92.9 | 12 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
32 | d1w25a1 |
| not modelled | 92.9 | 9 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
33 | c2ayxA_ |
| not modelled | 92.8 | 15 | PDB header:transferase Chain: A: PDB Molecule:sensor kinase protein rcsc; PDBTitle: solution structure of the e.coli rcsc c-terminus (residues2 700-949) containing linker region and phosphoreceiver3 domain
34 | c2yxbA_ |
| not modelled | 92.1 | 17 | PDB header:isomerase Chain: A: PDB Molecule:coenzyme b12-dependent mutase; PDBTitle: crystal structure of the methylmalonyl-coa mutase alpha-subunit from2 aeropyrum pernix
35 | d1heya_ |
| not modelled | 91.6 | 12 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
36 | c3q58A_ |
| not modelled | 91.5 | 13 | PDB header:isomerase Chain: A: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase; PDBTitle: structure of n-acetylmannosamine-6-phosphate epimerase from salmonella2 enterica
37 | c2jk1A_ |
| not modelled | 91.2 | 11 | PDB header:dna-binding Chain: A: PDB Molecule:hydrogenase transcriptional regulatory protein hupr1; PDBTitle: crystal structure of the wild-type hupr receiver domain
38 | d1xhfa1 |
| not modelled | 91.0 | 15 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
39 | c2c3zA_ |
| not modelled | 90.6 | 21 | PDB header:lyase Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase; PDBTitle: crystal structure of a truncated variant of indole-3-2 glycerol phosphate synthase from sulfolobus solfataricus
40 | d2ayxa1 |
| not modelled | 90.4 | 15 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
41 | d1jbea_ |
| not modelled | 90.4 | 10 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
42 | d1krwa_ |
| not modelled | 90.4 | 17 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
43 | d1a53a_ |
| not modelled | 90.4 | 21 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Tryptophan biosynthesis enzymes
44 | d1yioa2 |
| not modelled | 90.3 | 16 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
45 | d1qkka_ |
| not modelled | 90.1 | 19 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
46 | d1ua7a2 |
| not modelled | 90.0 | 15 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain
47 | c3hv2B_ |
| not modelled | 89.9 | 11 | PDB header:signaling protein Chain: B: PDB Molecule:response regulator/hd domain protein; PDBTitle: crystal structure of signal receiver domain of hd domain-2 containing protein from pseudomonas fluorescens pf-5
48 | d1y0ea_ |
| not modelled | 89.9 | 14 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:NanE-like
49 | c3gt7A_ |
| not modelled | 89.8 | 11 | PDB header:hydrolase Chain: A: PDB Molecule:sensor protein; PDBTitle: crystal structure of signal receiver domain of signal2 transduction histidine kinase from syntrophus3 aciditrophicus
50 | c2rjnA_ |
| not modelled | 89.7 | 11 | PDB header:hydrolase Chain: A: PDB Molecule:response regulator receiver:metal-dependent PDBTitle: crystal structure of an uncharacterized protein q2bku2 from2 neptuniibacter caesariensis
51 | d1dz3a_ |
| not modelled | 89.5 | 15 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
52 | c3eulB_ |
| not modelled | 88.7 | 12 | PDB header:transcription Chain: B: PDB Molecule:possible nitrate/nitrite response transcriptional PDBTitle: structure of the signal receiver domain of the putative2 response regulator narl from mycobacterium tuberculosis
53 | c3i42A_ |
| not modelled | 88.5 | 12 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey- PDBTitle: structure of response regulator receiver domain (chey-like)2 from methylobacillus flagellatus
54 | c3nhzA_ |
| not modelled | 88.4 | 16 | PDB header:dna binding protein Chain: A: PDB Molecule:two component system transcriptional regulator mtra; PDBTitle: structure of n-terminal domain of mtra
55 | c3cg0A_ |
| not modelled | 88.4 | 15 | PDB header:lyase Chain: A: PDB Molecule:response regulator receiver modulated diguanylate cyclase PDBTitle: crystal structure of signal receiver domain of modulated diguanylate2 cyclase from desulfovibrio desulfuricans g20, an example of alternate3 folding
56 | d1ny5a1 |
| not modelled | 88.3 | 14 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
57 | c2j48A_ |
| not modelled | 88.3 | 16 | PDB header:transferase Chain: A: PDB Molecule:two-component sensor kinase; PDBTitle: nmr structure of the pseudo-receiver domain of the cika2 protein.
58 | d1k68a_ |
| not modelled | 88.3 | 10 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
59 | d1u0sy_ |
| not modelled | 88.2 | 18 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
60 | d1ys7a2 |
| not modelled | 88.2 | 10 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
61 | d2pl1a1 |
| not modelled | 88.0 | 13 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
62 | c1cygA_ |
| not modelled | 87.7 | 16 | PDB header:glycosyltransferase Chain: A: PDB Molecule:cyclodextrin glucanotransferase; PDBTitle: cyclodextrin glucanotransferase (e.c.2.4.1.19) (cgtase)
63 | c3a23A_ |
| not modelled | 87.6 | 20 | PDB header:hydrolase Chain: A: PDB Molecule:putative secreted alpha-galactosidase; PDBTitle: crystal structure of beta-l-arabinopyranosidase complexed with d-2 galactose
64 | c2qr3A_ |
| not modelled | 87.4 | 13 | PDB header:transcription Chain: A: PDB Molecule:two-component system response regulator; PDBTitle: crystal structure of the n-terminal signal receiver domain of two-2 component system response regulator from bacteroides fragilis
65 | c3gl9B_ |
| not modelled | 87.4 | 16 | PDB header:signaling protein Chain: B: PDB Molecule:response regulator; PDBTitle: the structure of a histidine kinase-response regulator2 complex sheds light into two-component signaling and3 reveals a novel cis autophosphorylation mechanism
66 | d1h5ya_ |
| not modelled | 87.4 | 19 | Fold:TIM beta/alpha-barrel Superfamily:Ribulose-phoshate binding barrel Family:Histidine biosynthesis enzymes
67 | d1i3ca_ |
| not modelled | 87.1 | 10 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
68 | c2zwmA_ |
| not modelled | 87.0 | 13 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulatory protein yycf; PDBTitle: crystal structure of yycf receiver domain from bacillus2 subtilis
69 | c3l12A_ |
| not modelled | 87.0 | 13 | PDB header:hydrolase Chain: A: PDB Molecule:putative glycerophosphoryl diester phosphodiesterase; PDBTitle: crystal structure of putative glycerophosphoryl diester2 phosphodiesterase (yp_165505.1) from silicibacter pomeroyi dss-3 at3 1.60 a resolution
70 | d1kgsa2 |
| not modelled | 87.0 | 12 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
71 | c3igsB_ |
| not modelled | 86.9 | 14 | PDB header:isomerase Chain: B: PDB Molecule:n-acetylmannosamine-6-phosphate 2-epimerase 2; PDBTitle: structure of the salmonella enterica n-acetylmannosamine-6-phosphate2 2-epimerase
72 | d2r25b1 |
| not modelled | 86.6 | 12 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
73 | c2h6rG_ |
| not modelled | 86.6 | 19 | PDB header:isomerase Chain: G: PDB Molecule:triosephosphate isomerase; PDBTitle: crystal structure of triosephosphate isomerase (tim) from2 methanocaldococcus jannaschii
74 | c3crnA_ |
| not modelled | 86.6 | 16 | PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver domain protein, chey-like; PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1
75 | d1k66a_ |
| not modelled | 86.3 | 9 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
76 | c3b2nA_ |
| not modelled | 86.2 | 9 | PDB header:transcription Chain: A: PDB Molecule:uncharacterized protein q99uf4; PDBTitle: crystal structure of dna-binding response regulator, luxr family, from2 staphylococcus aureus
77 | d1dbwa_ |
| not modelled | 86.2 | 12 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
78 | c3cnbC_ |
| not modelled | 86.1 | 15 | PDB header:dna binding protein Chain: C: PDB Molecule:dna-binding response regulator, merr family; PDBTitle: crystal structure of signal receiver domain of dna binding response2 regulator protein (merr) from colwellia psychrerythraea 34h
79 | d2a9pa1 |
| not modelled | 86.0 | 15 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
80 | c3c97A_ |
| not modelled | 86.0 | 9 | PDB header:signaling protein, transferase Chain: A: PDB Molecule:signal transduction histidine kinase; PDBTitle: crystal structure of the response regulator receiver domain2 of a signal transduction histidine kinase from aspergillus3 oryzae
81 | d1fmfa_ |
| not modelled | 86.0 | 15 | Fold:Flavodoxin-like Superfamily:Cobalamin (vitamin B12)-binding domain Family:Cobalamin (vitamin B12)-binding domain
82 | c3qvqB_ |
| not modelled | 85.4 | 14 | PDB header:hydrolase Chain: B: PDB Molecule:phosphodiesterase olei02445; PDBTitle: the structure of an oleispira antarctica phosphodiesterase olei024452 in complex with the product sn-glycerol-3-phosphate
83 | c3c3mA_ |
| not modelled | 85.1 | 10 | PDB header:signaling protein Chain: A: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of the n-terminal domain of response regulator2 receiver protein from methanoculleus marisnigri jr1
84 | c3grcD_ |
| not modelled | 85.0 | 11 | PDB header:transferase Chain: D: PDB Molecule:sensor protein, kinase; PDBTitle: crystal structure of a sensor protein from polaromonas sp.2 js666
85 | c3cg4A_ |
| not modelled | 85.0 | 10 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:response regulator receiver domain protein (chey-like); PDBTitle: crystal structure of response regulator receiver domain protein (chey-2 like) from methanospirillum hungatei jf-1
86 | c3edeB_ |
| not modelled | 84.9 | 14 | PDB header:hydrolase Chain: B: PDB Molecule:cyclomaltodextrinase; PDBTitle: structural base for cyclodextrin hydrolysis
87 | c1bagA_ |
| not modelled | 84.7 | 16 | PDB header:alpha-amylase Chain: A: PDB Molecule:alpha-1,4-glucan-4-glucanohydrolase; PDBTitle: alpha-amylase from bacillus subtilis complexed with2 maltopentaose
88 | c3qjaA_ |
| not modelled | 84.6 | 13 | PDB header:lyase Chain: A: PDB Molecule:indole-3-glycerol phosphate synthase; PDBTitle: crystal structure of the mycobacterium tuberculosis indole-3-glycerol2 phosphate synthase (trpc) in apo form
89 | c2rdmB_ |
| not modelled | 84.2 | 13 | PDB header:structural genomics, unknown function Chain: B: PDB Molecule:response regulator receiver protein; PDBTitle: crystal structure of response regulator receiver protein from2 sinorhizobium medicae wsm419
90 | c3t6kB_ |
| not modelled | 83.8 | 18 | PDB header:signaling protein Chain: B: PDB Molecule:response regulator receiver; PDBTitle: crystal structure of a hypothetical response regulator (caur_3799)2 from chloroflexus aurantiacus j-10-fl at 1.86 a resolution
91 | d1zh2a1 |
| not modelled | 83.7 | 11 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
92 | c2nt3A_ |
| not modelled | 83.5 | 12 | PDB header:signaling protein Chain: A: PDB Molecule:response regulator homolog; PDBTitle: receiver domain from myxococcus xanthus social motility protein frzs2 (y102a mutant)
93 | c3ffsC_ |
| not modelled | 83.3 | 12 | PDB header:oxidoreductase Chain: C: PDB Molecule:inosine-5-monophosphate dehydrogenase; PDBTitle: the crystal structure of cryptosporidium parvum inosine-5'-2 monophosphate dehydrogenase
94 | c1jibA_ |
| not modelled | 83.3 | 21 | PDB header:hydrolase Chain: A: PDB Molecule:neopullulanase; PDBTitle: complex of alpha-amylase ii (tva ii) from thermoactinomyces2 vulgaris r-47 with maltotetraose based on a crystal soaked3 with maltohexaose.
95 | c3a47A_ |
| not modelled | 83.0 | 18 | PDB header:hydrolase Chain: A: PDB Molecule:oligo-1,6-glucosidase; PDBTitle: crystal structure of isomaltase from saccharomyces cerevisiae
96 | d2d3na2 |
| not modelled | 83.0 | 20 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain
97 | c3cu5B_ |
| not modelled | 82.8 | 13 | PDB header:transcription regulator Chain: B: PDB Molecule:two component transcriptional regulator, arac family; PDBTitle: crystal structure of a two component transcriptional regulator arac2 from clostridium phytofermentans isdg
98 | c3rqiA_ |
| not modelled | 82.6 | 10 | PDB header:transcription Chain: A: PDB Molecule:response regulator protein; PDBTitle: crystal structure of a response regulator protein from burkholderia2 pseudomallei with a phosphorylated aspartic acid, calcium ion and3 citrate
99 | d1a04a2 |
| not modelled | 82.6 | 18 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
100 | c1uasA_ |
| not modelled | 82.6 | 15 | PDB header:hydrolase Chain: A: PDB Molecule:alpha-galactosidase; PDBTitle: crystal structure of rice alpha-galactosidase
101 | c2qzjC_ |
| not modelled | 82.5 | 10 | PDB header:transcription Chain: C: PDB Molecule:two-component response regulator; PDBTitle: crystal structure of a two-component response regulator from2 clostridium difficile
102 | c3lteH_ |
| not modelled | 82.4 | 11 | PDB header:transcription Chain: H: PDB Molecule:response regulator; PDBTitle: crystal structure of response regulator (signal receiver domain) from2 bermanella marisrubri
103 | d1hvxa2 |
| not modelled | 82.3 | 25 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain
104 | c3ch0A_ |
| not modelled | 82.0 | 32 | PDB header:hydrolase Chain: A: PDB Molecule:glycerophosphodiester phosphodiesterase; PDBTitle: crystal structure of glycerophosphoryl diester phosphodiesterase2 (yp_677622.1) from cytophaga hutchinsonii atcc 33406 at 1.50 a3 resolution
105 | c3hdgE_ |
| not modelled | 81.8 | 14 | PDB header:structural genomics, unknown function Chain: E: PDB Molecule:uncharacterized protein; PDBTitle: crystal structure of the n-terminal domain of an2 uncharacterized protein (ws1339) from wolinella3 succinogenes
106 | d1w0ma_ |
| not modelled | 81.2 | 15 | Fold:TIM beta/alpha-barrel Superfamily:Triosephosphate isomerase (TIM) Family:Triosephosphate isomerase (TIM)
107 | c1m53A_ |
| not modelled | 80.9 | 9 | PDB header:isomerase Chain: A: PDB Molecule:isomaltulose synthase; PDBTitle: crystal structure of isomaltulose synthase (pali) from2 klebsiella sp. lx3
108 | d1s8na_ |
| not modelled | 80.5 | 14 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
109 | c2jrlA_ |
| not modelled | 80.3 | 13 | PDB header:transcription Chain: A: PDB Molecule:transcriptional regulator (ntrc family); PDBTitle: solution structure of the beryllofluoride-activated ntrc4 receiver2 domain dimer
110 | d1eh9a3 |
| not modelled | 80.3 | 15 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain
111 | d2gjpa2 |
| not modelled | 80.3 | 20 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain
112 | c2v82A_ |
| not modelled | 80.2 | 16 | PDB header:lyase Chain: A: PDB Molecule:2-dehydro-3-deoxy-6-phosphogalactonate aldolase; PDBTitle: kdpgal complexed to kdpgal
113 | d1mb3a_ |
| not modelled | 79.9 | 18 | Fold:Flavodoxin-like Superfamily:CheY-like Family:CheY-related
114 | d1ud2a2 |
| not modelled | 79.8 | 16 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain
115 | d1lwha2 |
| not modelled | 79.5 | 15 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain
116 | c3cfyA_ |
| not modelled | 79.4 | 10 | PDB header:structural genomics, unknown function Chain: A: PDB Molecule:putative luxo repressor protein; PDBTitle: crystal structure of signal receiver domain of putative luxo2 repressor protein from vibrio parahaemolyticus
117 | d2guya2 |
| not modelled | 79.3 | 12 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain
118 | c2ze0A_ |
| not modelled | 79.3 | 19 | PDB header:hydrolase Chain: A: PDB Molecule:alpha-glucosidase; PDBTitle: alpha-glucosidase gsj
119 | d1uoka2 |
| not modelled | 79.2 | 16 | Fold:TIM beta/alpha-barrel Superfamily:(Trans)glycosidases Family:Amylase, catalytic domain
120 | c3bw2A_ |
| not modelled | 79.2 | 12 | PDB header:oxidoreductase Chain: A: PDB Molecule:2-nitropropane dioxygenase; PDBTitle: crystal structures and site-directed mutagenesis study of nitroalkane2 oxidase from streptomyces ansochromogenes

Binding site prediction |

Due to computational demand, binding site predictions are not run for batch jobs

If you want to predict binding sites, please manually submit your model of choice to 3DLigandSite

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
If you use the binding site predictions from 3DLigandSite, please also cite:
3DLigandSite: predicting ligand-binding sites using similar structures.
Wass MN, Kelley LA and Sternberg MJ Nucleic Acids Research 38, W469-73 (2010) [PubMed]
© Structural Bioinformatics Group
Imperial College London
Lawrence Kelley, Benjamin Jefferys
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Component software
Template detection: HHpred 1.51
Secondary structure prediction: Psi-pred 2.5
Disorder prediction: Disopred 2.4
Transmembrane prediction: Memsat_SVM
Multi-template modelling and ab initio: Poing 1.0