Phyre 2 alignment of P0ACJ0 with d2bgca1

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Job Description | P0ACJ0
Confidence | 95.51% | Date | Thu Jan 5 11:18:17 GMT 2012
Rank | 155 | Aligned Residues | 44
% Identity | 18% | Template | d2bgca1
SCOP info | DNA/RNA-binding 3-helical bundle | "Winged helix" DNA-binding domain | CAP C-terminal domain-like
Resolution | 2.3

| Insertion relative to template
| Deletion relative to template
| Catalytic residue from the CSA
Detailed help on interpreting your alignment

|  | 27 | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 |  | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . |  |  |  | . | . | . | . | . | . | . | . | 70
Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |
Query SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |
Query Sequence |  | G | R | I | S | N | V | E | L | S | K | R | V | G | L | . | S | P | T | P | C | L | E | R | V | R | R | L | E | R | Q | G | F | I | Q | G | Y | . | . | . | T | A | L | L | N | P | H | Y | L
Query Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |
Alig confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . | . |  |  |  |  |  |  |  |  |
Template Conservation |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template Sequence |  | D | N | L | T | M | Q | E | L | G | Y | S | S | G | I | A | H | S | S | A | V | S | R | I | I | S | K | L | K | Q | E | K | V | I | V | Y | K | N | S | C | F | Y | V | Q | N | L | D | Y | L
Template Known Secondary structure |  | S |  |  |  |  |  |  |  |  |  |  | T | T |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | S |  |  |  |  | T | T |  |  |  |  | S |  |  |  |  |
Template Predicted Secondary structure |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|  | 167 | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | .

Download: | Text version

No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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Lawrence Kelley, Benjamin Jefferys |
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