BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (1061 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P21513 Ribonuclease E n=119 Tax=Gammaproteobacteria Rep... 2124 0.0 UniRef50_C4X6M8 RNase E n=25 Tax=Gammaproteobacteria RepID=C4X6M... 1375 0.0 UniRef50_Q46977 RNase E (Fragment) n=11 Tax=Enterobacteriaceae R... 1034 0.0 UniRef50_Q7MM07 Ribonuclease E n=15 Tax=Gammaproteobacteria RepI... 978 0.0 UniRef50_B0BR35 Ribonuclease E n=14 Tax=Pasteurellaceae RepID=B0... 947 0.0 UniRef50_Q8K9J9 Ribonuclease E n=5 Tax=Buchnera aphidicola RepID... 878 0.0 UniRef50_P44443 Ribonuclease E n=98 Tax=Gammaproteobacteria RepI... 864 0.0 UniRef50_A8FWL8 Ribonuclease, Rne/Rng family n=38 Tax=Gammaprote... 858 0.0 UniRef50_Q492Q0 Ribonuclease E n=1 Tax=Candidatus Blochmannia pe... 851 0.0 UniRef50_C9R616 Ribonuclease E (RNase E) n=2 Tax=Gammaproteobact... 847 0.0 UniRef50_Q2SK60 Ribonucleases G and E n=3 Tax=Gammaproteobacteri... 764 0.0 UniRef50_Q1QX63 Ribonuclease E n=5 Tax=Gammaproteobacteria RepID... 763 0.0 UniRef50_C7RBE6 Ribonuclease, Rne/Rng family n=1 Tax=Kangiella k... 748 0.0 UniRef50_C1DR24 Ribonuclease E n=27 Tax=Gammaproteobacteria RepI... 739 0.0 UniRef50_A3JIF1 Ribonucleases G and E n=2 Tax=Gammaproteobacteri... 738 0.0 UniRef50_C5BU48 Ribonuclease E n=1 Tax=Teredinibacter turnerae T... 737 0.0 UniRef50_Q0VQP0 Phosphoric diester hydrolase n=5 Tax=Gammaproteo... 730 0.0 UniRef50_Q1YTQ8 Ribonuclease E n=1 Tax=gamma proteobacterium HTC... 727 0.0 UniRef50_Q0A8Q8 Ribonuclease E n=8 Tax=Gammaproteobacteria RepID... 723 0.0 UniRef50_Q2P196 Ribonuclease E n=28 Tax=Proteobacteria RepID=Q2P... 705 0.0 UniRef50_B5JUW5 Ribonuclease E n=1 Tax=gamma proteobacterium HTC... 697 0.0 UniRef50_D0L1K6 Ribonuclease, Rne/Rng family n=1 Tax=Halothiobac... 694 0.0 UniRef50_A4A8E4 Ribonuclease E n=5 Tax=unclassified Gammaproteob... 686 0.0 UniRef50_C8N8A8 Ribonuclease G and E n=19 Tax=Proteobacteria Rep... 679 0.0 UniRef50_B4RR31 Rne n=31 Tax=Neisseriaceae RepID=B4RR31_NEIG2 667 0.0 UniRef50_Q2YA54 Ribonuclease E n=7 Tax=Betaproteobacteria RepID=... 664 0.0 UniRef50_C5AD76 Ribonuclease E n=21 Tax=Proteobacteria RepID=C5A... 663 0.0 UniRef50_A9ADG1 Ribonuclease, Rne/Rng family n=89 Tax=Betaproteo... 657 0.0 UniRef50_B5EL09 Ribonuclease, Rne/Rng family n=2 Tax=Acidithioba... 639 0.0 UniRef50_Q6FEY0 Ribonuclease E (RNase E): endoribonuclease for r... 606 e-171 UniRef50_C8PW15 Ribonuclease E n=1 Tax=Enhydrobacter aerosaccus ... 603 e-171 UniRef50_A5WCP3 RNAse E n=3 Tax=Proteobacteria RepID=A5WCP3_PSYWF 603 e-170 UniRef50_C0VHW5 Ribonuclease E (RNase E): endoribonuclease for r... 603 e-170 UniRef50_B0VED2 Ribonuclease E (RNase E): endoribonuclease for r... 601 e-170 UniRef50_B6BTS7 Ribonuclease E n=2 Tax=Betaproteobacteria RepID=... 584 e-165 UniRef50_A8PMW2 Ribonuclease E (RNase E) n=1 Tax=Rickettsiella g... 578 e-163 UniRef50_B3T2A0 Putative S1 RNA-binding domain protein n=2 Tax=p... 569 e-160 UniRef50_B0TYI3 Ribonuclease E n=18 Tax=Francisella RepID=B0TYI3... 554 e-156 UniRef50_Q89AH3 Putative truncated ribonuclease E n=22 Tax=Bacte... 550 e-154 UniRef50_A1AW88 Ribonuclease, Rne/Rng family n=3 Tax=Gammaproteo... 483 e-134 UniRef50_Q3A2X7 Ribonuclease E n=3 Tax=Bacteria RepID=Q3A2X7_PELCD 474 e-132 UniRef50_Q0F3G3 Ribonucleases G and E n=1 Tax=Mariprofundus ferr... 467 e-129 UniRef50_Q1K0W4 Ribonuclease, Rne/Rng family n=1 Tax=Desulfuromo... 442 e-122 UniRef50_Q2RSE6 RNAse E n=1 Tax=Rhodospirillum rubrum ATCC 11170... 439 e-121 UniRef50_C6E0U6 Ribonuclease, Rne/Rng family n=8 Tax=Desulfuromo... 430 e-118 UniRef50_C6MTB8 Ribonuclease, Rne/Rng family n=1 Tax=Geobacter s... 430 e-118 UniRef50_A8ZW09 Ribonuclease, Rne/Rng family n=2 Tax=Desulfobact... 419 e-115 UniRef50_Q2LU58 Ribonuclease E n=1 Tax=Syntrophus aciditrophicus... 414 e-113 UniRef50_C8WCX7 Ribonuclease, Rne/Rng family n=3 Tax=Zymomonas m... 406 e-111 UniRef50_Q6AIU3 Probable RNAse E n=1 Tax=Desulfotalea psychrophi... 405 e-111 UniRef50_Q1NUM8 Ribonuclease E and G n=2 Tax=Deltaproteobacteria... 394 e-107 UniRef50_A0LJB4 RNAse E n=1 Tax=Syntrophobacter fumaroxidans MPO... 390 e-106 UniRef50_B8GWM7 Ribonuclease E n=6 Tax=Caulobacteraceae RepID=B8... 390 e-106 UniRef50_B6INB6 Ribonuclease, Rne n=1 Tax=Rhodospirillum centenu... 385 e-105 UniRef50_B5ZDP7 Ribonuclease, Rne/Rng family n=12 Tax=Alphaprote... 377 e-102 UniRef50_Q0FAK9 Ribonuclease, Rne/Rng family protein n=1 Tax=Rho... 376 e-102 UniRef50_UPI00003842F2 COG1530: Ribonucleases G and E n=1 Tax=Ma... 372 e-101 UniRef50_Q0BVH1 Ribonuclease E n=2 Tax=Acetobacteraceae RepID=Q0... 364 1e-98 UniRef50_B8EPB2 Ribonuclease, Rne/Rng family n=1 Tax=Methylocell... 364 1e-98 UniRef50_Q1PY04 Strongly similar to ribonuclease E (RNase E) n=1... 363 2e-98 UniRef50_B0UJB2 Ribonuclease, Rne/Rng family n=4 Tax=Methylobact... 362 3e-98 UniRef50_A8LRP5 Ribonuclease n=35 Tax=Rhodobacterales RepID=A8LR... 361 7e-98 UniRef50_C0R3W8 Ribonuclease, Rne/Rng family protein n=9 Tax=Wol... 361 1e-97 UniRef50_Q3J4J9 RNAse E n=6 Tax=Rhodobacteraceae RepID=Q3J4J9_RHOS4 360 2e-97 UniRef50_Q92QJ4 Probable ribonuclease E n=1 Tax=Sinorhizobium me... 358 6e-97 UniRef50_D2LHL1 Ribonuclease, Rne/Rng family n=1 Tax=Rhodomicrob... 356 2e-96 UniRef50_B9JDP7 Ribonuclease E protein n=3 Tax=Alphaproteobacter... 356 3e-96 UniRef50_C6QC83 Ribonuclease, Rne/Rng family n=1 Tax=Hyphomicrob... 356 4e-96 UniRef50_B5ZYQ5 Ribonuclease, Rne/Rng family n=7 Tax=Alphaproteo... 355 4e-96 UniRef50_C6ADR1 Ribonuclease E n=5 Tax=Rhizobiales RepID=C6ADR1_... 355 5e-96 UniRef50_Q2IVP9 RNAse E n=3 Tax=Bradyrhizobiaceae RepID=Q2IVP9_R... 352 3e-95 UniRef50_A8IFL2 Ribonuclease E and G n=6 Tax=Rhizobiales RepID=A... 352 3e-95 UniRef50_Q7CZH1 Ribonuclease E n=7 Tax=Alphaproteobacteria RepID... 352 4e-95 UniRef50_B9JVK9 Ribonuclease E n=40 Tax=Rhizobiales RepID=B9JVK9... 352 7e-95 UniRef50_A0L8J1 Ribonuclease E n=1 Tax=Magnetococcus sp. MC-1 Re... 351 7e-95 UniRef50_B6JHD4 Ribonuclease E (RNase E) n=19 Tax=Alphaproteobac... 351 1e-94 UniRef50_A8GXM7 Ribonuclease E n=15 Tax=cellular organisms RepID... 348 8e-94 UniRef50_Q1MQA2 Ribonucleases G and E n=2 Tax=Desulfovibrionacea... 348 9e-94 UniRef50_D2R4N9 Ribonuclease, Rne/Rng family n=2 Tax=Planctomyce... 347 1e-93 UniRef50_B8IYX2 Ribonuclease, Rne/Rng family n=10 Tax=Desulfovib... 345 6e-93 UniRef50_A3VT88 Ribonuclease E n=1 Tax=Parvularcula bermudensis ... 343 2e-92 UniRef50_Q0G6Z6 Ribonuclease E and G n=2 Tax=Rhizobiales RepID=Q... 337 1e-90 UniRef50_Q2G5W8 Ribonuclease E n=8 Tax=cellular organisms RepID=... 335 4e-90 UniRef50_B4RCR6 Ribonuclease, Rne/Rng family protein n=4 Tax=Alp... 334 1e-89 UniRef50_B0SXB4 Ribonuclease, Rne/Rng family n=2 Tax=Alphaproteo... 329 4e-88 UniRef50_B8DIL9 Ribonuclease, Rne/Rng family n=3 Tax=Desulfovibr... 323 2e-86 UniRef50_D1N7U6 Ribonuclease, Rne/Rng family n=2 Tax=Lentisphaer... 319 3e-85 UniRef50_B3DX65 Ribonuclease G and E n=7 Tax=Verrucomicrobia Rep... 317 1e-84 UniRef50_Q0C4E1 Ribonuclease, Rne/Rng family n=2 Tax=Hyphomonada... 315 5e-84 UniRef50_B5JNK0 Ribonuclease, Rne/Rng family n=1 Tax=Verrucomicr... 310 2e-82 UniRef50_Q2GKZ9 Ribonuclease, Rne/Rng family n=10 Tax=Anaplasmat... 301 1e-79 UniRef50_Q0ABM4 Ribonuclease G n=2 Tax=Proteobacteria RepID=Q0AB... 295 6e-78 UniRef50_Q1V2D3 Ribonuclease E/G n=5 Tax=Bacteria RepID=Q1V2D3_P... 295 6e-78 UniRef50_A3ZLB1 Ribonuclease E n=4 Tax=Planctomycetaceae RepID=A... 295 7e-78 UniRef50_A5CEM7 Ribonuclease E n=2 Tax=Orientia tsutsugamushi Re... 293 3e-77 UniRef50_D1AAW2 Ribonuclease, Rne/Rng family n=1 Tax=Thermomonos... 290 3e-76 UniRef50_D1SD19 Ribonuclease, Rne/Rng family n=1 Tax=Micromonosp... 288 1e-75 UniRef50_D2PUT1 Ribonuclease, Rne/Rng family n=1 Tax=Kribbella f... 287 2e-75 UniRef50_C4PNX0 Ribonuclease E n=17 Tax=Chlamydiales RepID=C4PNX... 286 2e-75 UniRef50_A8M0Z2 Ribonuclease, Rne/Rng family n=2 Tax=Salinispora... 284 1e-74 UniRef50_C8NQN5 Ribonuclease E n=5 Tax=Corynebacterium RepID=C8N... 284 1e-74 UniRef50_D2NSV3 Ribonuclease G and E n=2 Tax=Rothia mucilaginosa... 283 3e-74 UniRef50_A8L1W0 Ribonuclease, Rne/Rng family n=25 Tax=Actinobact... 281 8e-74 UniRef50_D1B5Z1 Ribonuclease, Rne/Rng family n=3 Tax=Synergistac... 281 8e-74 UniRef50_C4RPB5 Ribonuclease Rne/Rng n=1 Tax=Micromonospora sp. ... 281 1e-73 UniRef50_D0LZK2 Ribonuclease, Rne/Rng family n=1 Tax=Haliangium ... 280 2e-73 UniRef50_C2BMV7 Ribonuclease E n=3 Tax=Corynebacterium RepID=C2B... 279 4e-73 UniRef50_A4F9K3 Ribonuclease, Rne/Rng family n=1 Tax=Saccharopol... 279 4e-73 UniRef50_C7NH23 RNAse G n=1 Tax=Kytococcus sedentarius DSM 20547... 277 2e-72 UniRef50_A1HNZ2 Ribonuclease, Rne/Rng family n=1 Tax=Thermosinus... 277 2e-72 UniRef50_C7MPQ3 Ribonuclease, Rne/Rng family n=2 Tax=Actinomycet... 276 3e-72 UniRef50_C0XRI1 Ribonuclease E (Fragment) n=2 Tax=Corynebacteriu... 276 4e-72 UniRef50_C7Q8B4 Ribonuclease, Rne/Rng family n=1 Tax=Catenulispo... 275 6e-72 UniRef50_D1BDM1 Ribonuclease, Rne/Rng family n=1 Tax=Sanguibacte... 275 9e-72 UniRef50_A6GBN9 Ribonuclease G n=1 Tax=Plesiocystis pacifica SIR... 275 1e-71 UniRef50_A4AGL0 Ribonuclease G n=3 Tax=Actinobacteria (class) Re... 274 2e-71 UniRef50_A5EVP9 Ribonuclease g n=16 Tax=Gammaproteobacteria RepI... 273 2e-71 UniRef50_C8W5Q7 Ribonuclease, Rne/Rng family n=11 Tax=Bacteria R... 273 2e-71 UniRef50_B2KEH9 Ribonuclease, Rne/Rng family n=1 Tax=Elusimicrob... 272 4e-71 UniRef50_D0WNB8 Putative S1 RNA binding domain protein n=1 Tax=A... 272 4e-71 UniRef50_A7C082 Ribonuclease G and E n=1 Tax=Beggiatoa sp. PS Re... 271 7e-71 UniRef50_A0JXK2 Ribonuclease, Rne/Rng family n=4 Tax=Actinomycet... 271 9e-71 UniRef50_UPI0001BC2E10 putative ribonuclease n=1 Tax=Brevibacter... 269 5e-70 UniRef50_D1BV45 Ribonuclease, Rne/Rng family n=2 Tax=Actinomycet... 267 1e-69 UniRef50_A8MHL2 Ribonuclease, Rne/Rng family n=2 Tax=Alkaliphilu... 266 3e-69 UniRef50_B8HA23 Ribonuclease, Rne/Rng family n=1 Tax=Arthrobacte... 266 3e-69 UniRef50_B2GGD5 Putative ribonuclease n=1 Tax=Kocuria rhizophila... 266 4e-69 UniRef50_C2KPN3 Ribonuclease G n=3 Tax=Actinomycetaceae RepID=C2... 265 9e-69 UniRef50_C0VZF1 Ribonuclease E n=1 Tax=Actinomyces coleocanis DS... 265 1e-68 UniRef50_C7QYR2 Ribonuclease, Rne/Rng family n=1 Tax=Jonesia den... 264 1e-68 UniRef50_C8XF15 Ribonuclease, Rne/Rng family n=1 Tax=Nakamurella... 264 1e-68 UniRef50_C9KMZ9 Ribonuclease G n=2 Tax=Veillonellaceae RepID=C9K... 263 2e-68 UniRef50_D2SCS1 Ribonuclease, Rne/Rng family n=39 Tax=Bacteria R... 263 2e-68 UniRef50_C3W9J7 Ribonuclease G and E n=1 Tax=Fusobacterium morti... 262 4e-68 UniRef50_A6WDN2 Ribonuclease, Rne/Rng family n=1 Tax=Kineococcus... 262 5e-68 UniRef50_C3PI06 Ribonuclease E n=3 Tax=Corynebacterium RepID=C3P... 261 1e-67 UniRef50_A4XJ17 Ribonuclease G n=7 Tax=Clostridia RepID=A4XJ17_C... 261 1e-67 UniRef50_D0LAJ7 Ribonuclease, Rne/Rng family n=1 Tax=Gordonia br... 260 2e-67 UniRef50_Q83MU7 Ribonuclease G n=2 Tax=Tropheryma whipplei RepID... 260 2e-67 UniRef50_C5CAZ2 Ribonuclease, Rne/Rng family n=1 Tax=Micrococcus... 260 2e-67 UniRef50_A0LIP4 RNAse G n=22 Tax=Bacteria RepID=A0LIP4_SYNFM 260 2e-67 UniRef50_UPI0001C430FE cytosolic axial filament protein n=1 Tax=... 260 2e-67 UniRef50_UPI0001C31D95 ribonuclease, Rne/Rng family n=1 Tax=Cone... 259 3e-67 UniRef50_C1A932 Ribonuclease G n=1 Tax=Gemmatimonas aurantiaca T... 259 5e-67 UniRef50_Q2S597 Ribonuclease, Rne/Rng family subfamily n=1 Tax=S... 258 8e-67 UniRef50_C5VAX0 Ribonuclease E n=5 Tax=Corynebacterium RepID=C5V... 258 9e-67 UniRef50_B8DVT8 Ribonuclease G n=7 Tax=Bifidobacterium RepID=B8D... 258 1e-66 UniRef50_D2RC82 S1 RNA binding domain protein n=8 Tax=Bifidobact... 257 1e-66 UniRef50_C9RQU1 Ribonuclease, Rne/Rng family n=1 Tax=Fibrobacter... 257 2e-66 UniRef50_A0R152 Ribonuclease, Rne/Rng family protein n=9 Tax=Cor... 256 3e-66 UniRef50_B2HMG4 Ribonuclease E Rne n=28 Tax=Mycobacterium RepID=... 256 3e-66 UniRef50_Q01YX3 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus ... 256 4e-66 UniRef50_B8CXZ3 Ribonuclease, Rne/Rng family n=1 Tax=Halothermot... 255 7e-66 UniRef50_A6LDG7 Ribonuclease G n=21 Tax=Bacteria RepID=A6LDG7_PARD8 254 1e-65 UniRef50_A9ESZ7 Ribonuclease G n=1 Tax=Sorangium cellulosum 'So ... 253 3e-65 UniRef50_B1H0J1 Ribonuclease G n=1 Tax=uncultured Termite group ... 252 5e-65 UniRef50_C4LJU7 Ribonuclease E n=1 Tax=Corynebacterium kroppenst... 251 1e-64 UniRef50_B8FM65 Ribonuclease, Rne/Rng family n=1 Tax=Desulfatiba... 251 1e-64 UniRef50_C6JJB6 Ribonuclease G and E n=2 Tax=Fusobacterium RepID... 251 2e-64 UniRef50_B0VJP4 Ribonuclease G n=1 Tax=Candidatus Cloacamonas ac... 251 2e-64 UniRef50_Q1D0P4 Ribonuclease, Rne/Rng family n=7 Tax=Proteobacte... 249 5e-64 UniRef50_C6D805 Ribonuclease, Rne/Rng family n=3 Tax=Bacillales ... 248 1e-63 UniRef50_D1Y9V9 S1 RNA binding domain protein n=3 Tax=Propioniba... 247 1e-63 UniRef50_C7LYB0 Ribonuclease, Rne/Rng family n=1 Tax=Acidimicrob... 246 3e-63 UniRef50_C0WDS2 Ribonuclease n=1 Tax=Acidaminococcus sp. D21 Rep... 244 9e-63 UniRef50_A3EQR7 Ribonucleases G and E n=3 Tax=Leptospirillum Rep... 244 1e-62 UniRef50_C1PAJ8 Ribonuclease, Rne/Rng family n=1 Tax=Bacillus co... 244 1e-62 UniRef50_B1VGM2 Ribonuclease E n=1 Tax=Corynebacterium urealytic... 244 2e-62 UniRef50_Q8DL99 Ribonuclease E n=3 Tax=Chroococcales RepID=Q8DL9... 243 2e-62 UniRef50_Q0AWI9 RNAse G n=1 Tax=Syntrophomonas wolfei subsp. wol... 243 3e-62 UniRef50_Q7U4C5 Ribonuclease E n=16 Tax=cellular organisms RepID... 243 4e-62 UniRef50_A6LNV2 Ribonuclease, Rne/Rng family n=2 Tax=Thermosipho... 242 5e-62 UniRef50_Q9K8J2 Ribonuclease G (Cytosolic axial filament protein... 242 7e-62 UniRef50_D2RM73 Ribonuclease, Rne/Rng family n=1 Tax=Acidaminoco... 241 1e-61 UniRef50_Q4JWU2 Ribonuclease E n=2 Tax=Corynebacterium jeikeium ... 241 2e-61 UniRef50_Q31PW1 Ribonuclease, Rne/Rng family n=19 Tax=Cyanobacte... 240 2e-61 UniRef50_Q2GES6 Ribonuclease, Rne/Rng family n=2 Tax=Neoricketts... 240 2e-61 UniRef50_C5CEM0 Ribonuclease, Rne/Rng family n=1 Tax=Kosmotoga o... 240 3e-61 UniRef50_P0A9J2 Ribonuclease G n=523 Tax=cellular organisms RepI... 240 3e-61 UniRef50_B1I4P9 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus ... 240 3e-61 UniRef50_P72656 Ribonuclease E homolog n=10 Tax=Cyanobacteria Re... 238 7e-61 UniRef50_D1BNE2 Ribonuclease, Rne/Rng family n=3 Tax=Veillonella... 237 2e-60 UniRef50_Q2JW46 Ribonuclease, Rne/Rng family n=4 Tax=Synechococc... 237 2e-60 UniRef50_C1F7B7 Ribonuclease, Rne/Rng family, insertion n=2 Tax=... 236 3e-60 UniRef50_Q1IRN1 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus ... 234 1e-59 UniRef50_A6CTK6 Cytosolic axial filament protein n=1 Tax=Bacillu... 232 5e-59 UniRef50_B0TWF6 Ribonuclease G n=17 Tax=Francisella RepID=B0TWF6... 231 8e-59 UniRef50_C9LKU5 Cytoplasmic axial filament protein n=1 Tax=Diali... 231 9e-59 UniRef50_A7H8A5 Ribonuclease, Rne/Rng family n=1 Tax=Anaeromyxob... 228 7e-58 UniRef50_B2V9I2 Ribonuclease, Rne/Rng family n=4 Tax=Hydrogenoth... 226 4e-57 UniRef50_A9RK39 Predicted protein n=1 Tax=Physcomitrella patens ... 226 5e-57 UniRef50_Q11NU1 Ribonuclease G n=10 Tax=Bacteroidetes RepID=Q11N... 223 3e-56 UniRef50_B3QZC2 Ribonuclease, Rne/Rng family n=12 Tax=Chlorobiac... 222 7e-56 UniRef50_A5WCI8 RNAse G n=4 Tax=Moraxellaceae RepID=A5WCI8_PSYWF 222 7e-56 UniRef50_D0MD03 Ribonuclease, Rne/Rng family n=1 Tax=Rhodothermu... 221 1e-55 UniRef50_C0ZAL2 Putative ribonuclease G n=1 Tax=Brevibacillus br... 221 1e-55 UniRef50_D1I512 Whole genome shotgun sequence of line PN40024, s... 221 1e-55 UniRef50_A7HQG8 Ribonuclease, Rne/Rng family n=1 Tax=Parvibaculu... 221 2e-55 UniRef50_B6YQX9 Ribonuclease G n=23 Tax=Bacteroidales RepID=B6YQ... 220 2e-55 UniRef50_A2BYM7 S1 RNA binding domain:Ribonuclease E and G n=8 T... 218 9e-55 UniRef50_C9M9G5 Ribonuclease G n=1 Tax=Jonquetella anthropi E3_3... 218 1e-54 UniRef50_A8F3K6 Ribonuclease, Rne/Rng family n=1 Tax=Thermotoga ... 217 2e-54 UniRef50_A9VIS0 Ribonuclease, Rne/Rng family n=78 Tax=Bacillus R... 216 3e-54 UniRef50_B0K422 Ribonuclease, Rne/Rng family n=12 Tax=Thermoanae... 216 4e-54 UniRef50_D2LS23 Ribonuclease, Rne/Rng family n=1 Tax=Bacillus ce... 213 4e-53 UniRef50_A9BIJ0 RNA binding S1 domain protein n=1 Tax=Petrotoga ... 210 3e-52 UniRef50_Q3AF57 Ribonuclease, Rne/Rng family n=1 Tax=Carboxydoth... 207 2e-51 UniRef50_Q5WES2 Ribonuclease G n=1 Tax=Bacillus clausii KSM-K16 ... 206 3e-51 UniRef50_C4K6Y9 RNase G (Ribonuclease G) n=2 Tax=Enterobacteriac... 204 1e-50 UniRef50_A8UTH4 Cytoplasmic axial filament protein n=1 Tax=Hydro... 204 1e-50 UniRef50_C3WHH5 Ribonuclease G n=4 Tax=Fusobacterium RepID=C3WHH... 203 3e-50 UniRef50_Q9M498 Endoribonuclease E (Fragment) n=6 Tax=Magnolioph... 203 4e-50 UniRef50_Q8GZQ4 Endoribonuclease n=8 Tax=core eudicotyledons Rep... 202 4e-50 UniRef50_A7HJB9 Ribonuclease, Rne/Rng family n=1 Tax=Fervidobact... 200 3e-49 UniRef50_A5FJP9 Ribonuclease, Rne/Rng family n=29 Tax=Bacteroide... 199 4e-49 UniRef50_Q2B6H0 Cytosolic axial filament protein n=1 Tax=Bacillu... 199 6e-49 UniRef50_B1LBB5 Ribonuclease, Rne/Rng family n=6 Tax=Thermotogac... 198 8e-49 UniRef50_C3WSU7 Ribonuclease G n=6 Tax=Fusobacterium RepID=C3WSU... 198 8e-49 UniRef50_C9XNN6 Ribonuclease g n=8 Tax=Clostridium RepID=C9XNN6_... 192 8e-47 UniRef50_P51211 Ribonuclease E homolog n=2 Tax=Porphyra RepID=RN... 189 4e-46 UniRef50_A5I670 Ribonuclease G n=12 Tax=Clostridium RepID=A5I670... 189 7e-46 UniRef50_A6LQR5 Ribonuclease, Rne/Rng family n=8 Tax=Clostridium... 189 7e-46 UniRef50_D0JBK5 Ribonuclease G n=2 Tax=Blattabacterium RepID=D0J... 188 1e-45 UniRef50_Q97JL8 Ribonucleases G/E family protein n=1 Tax=Clostri... 187 3e-45 UniRef50_A5ZQK1 Putative uncharacterized protein n=2 Tax=Clostri... 184 2e-44 UniRef50_Q6B930 Ribonuclease E n=1 Tax=Gracilaria tenuistipitata... 181 2e-43 UniRef50_Q0SR50 Ribonuclease, Rne/Rng family n=8 Tax=Clostridium... 179 8e-43 UniRef50_A0Q1T9 Ribonuclease G n=4 Tax=Clostridium RepID=A0Q1T9_... 177 3e-42 UniRef50_C5RGP2 Ribonuclease, Rne/Rng family n=1 Tax=Clostridium... 170 2e-40 UniRef50_C6J9J6 Putative uncharacterized protein n=1 Tax=Ruminoc... 169 5e-40 UniRef50_C5EUP6 Ribonuclease G n=1 Tax=Clostridiales bacterium 1... 169 6e-40 UniRef50_A9KMH0 Ribonuclease, Rne/Rng family n=1 Tax=Clostridium... 169 6e-40 UniRef50_O67311 Cytoplasmic axial filament protein n=1 Tax=Aquif... 167 2e-39 UniRef50_D2MIS5 Ribonuclease, Rne/Rng family (Fragment) n=1 Tax=... 164 2e-38 UniRef50_A8VZD2 Alanine racemase n=1 Tax=Bacillus selenitireduce... 162 6e-38 UniRef50_C9L8D6 Ribonucleases G and E n=1 Tax=Blautia hansenii D... 162 8e-38 UniRef50_C0D9K4 Putative uncharacterized protein n=2 Tax=Clostri... 161 2e-37 UniRef50_A0AIZ2 Complete genome n=21 Tax=Listeria RepID=A0AIZ2_L... 160 2e-37 UniRef50_A8RTZ4 Putative uncharacterized protein n=1 Tax=Clostri... 160 3e-37 UniRef50_C6LLP4 Cytoplasmic axial filament protein n=1 Tax=Bryan... 156 3e-36 UniRef50_A6MVU3 Ribonuclease E n=1 Tax=Rhodomonas salina RepID=A... 153 4e-35 UniRef50_C0ERY0 Putative uncharacterized protein n=1 Tax=Eubacte... 148 1e-33 UniRef50_UPI0001851167 ribonuclease G n=1 Tax=Bacillus coahuilen... 148 1e-33 UniRef50_B4U851 RNA binding S1 domain protein n=1 Tax=Hydrogenob... 147 2e-33 UniRef50_C7G7S7 Ribonuclease, Rne/Rng family n=2 Tax=Roseburia R... 144 2e-32 UniRef50_B6INE9 Ribonuclease, Rne n=1 Tax=Rhodospirillum centenu... 140 2e-31 UniRef50_UPI0001BC3959 ribonuclease G n=1 Tax=Butyrivibrio cross... 140 3e-31 UniRef50_UPI0001973AFC ribonuclease n=1 Tax=Clostridium sp. M62/... 138 1e-30 UniRef50_C4Z9Z5 Ribonuclease G and E n=1 Tax=Eubacterium rectale... 137 2e-30 UniRef50_B7ANV1 Putative uncharacterized protein n=1 Tax=Bactero... 136 4e-30 >UniRef50_P21513 Ribonuclease E n=119 Tax=Gammaproteobacteria RepID=RNE_ECOLI Length = 1061 Score = 2124 bits (5503), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1061/1061 (100%), Positives = 1061/1061 (100%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY Sbjct: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI Sbjct: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA Sbjct: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT Sbjct: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE Sbjct: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS Sbjct: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME Sbjct: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA Sbjct: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA Sbjct: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA Sbjct: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 Query: 661 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR 720 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR Sbjct: 661 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR 720 Query: 721 KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ 780 KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ Sbjct: 721 KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ 780 Query: 781 QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG 840 QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG Sbjct: 781 QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG 840 Query: 841 KVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPV 900 KVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPV Sbjct: 841 KVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPV 900 Query: 901 QVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEV 960 QVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEV Sbjct: 901 QVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEV 960 Query: 961 VETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVP 1020 VETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVP Sbjct: 961 VETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVP 1020 Query: 1021 EAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE 1061 EAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE Sbjct: 1021 EAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE 1061 >UniRef50_C4X6M8 RNase E n=25 Tax=Gammaproteobacteria RepID=C4X6M8_KLEPN Length = 1077 Score = 1375 bits (3558), Expect = 0.0, Method: Compositional matrix adjust. Identities = 819/1108 (73%), Positives = 872/1108 (78%), Gaps = 78/1108 (7%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY Sbjct: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEIAREYFPANY+AHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI Sbjct: 61 GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELP+GMGLIVRTAGVGKSAEAL Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDLSFRLKHWEAI+KAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA Sbjct: 181 QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT Sbjct: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE Sbjct: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS Sbjct: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSILRLIEEEALKENT+EVHAIVPVPIASYLLNEKR+AV+AIE+RQ VR +IVPND+M+ Sbjct: 421 LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPNDEMQ 480 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPHY VLRVRKGEET TLSY+LPKLHEE MALP ++E AERKRPEQPALA F MPD PPA Sbjct: 481 TPHYSVLRVRKGEETSTLSYLLPKLHEEEMALPGDDEPAERKRPEQPALAAFVMPDAPPA 540 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTE-QPAPKAE 599 P EPAA VA AAP AAPAQPGLLSRFF ALK +FSG EE KP E Q KAE Sbjct: 541 PMLEEPAAAPVA---AAAPVAAAAPAQPGLLSRFFSALKNIFSGAEEAKPAEVQVEKKAE 597 Query: 600 AKPERQQDRRKPR---------------QNNRRDRNERRDTRSERTEGSDNREENRRNRR 644 KPERQQ+RRKPR + RD + RDTR++ EG + RE NRR Sbjct: 598 EKPERQQERRKPRANNRRDRNDRRDNRDNRDNRDNRDNRDTRADNAEGREPRESREENRR 657 Query: 645 QAQ---QQTAETRESRQ-QAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVE 700 + Q E R+ RQ + EKA++ DEQQ PRRER+RRR+DDKRQAQQEAKA E Sbjct: 658 NRREKPSQNVEARDVRQTSGDDAEKAKSRDEQQ-PRRERTRRRSDDKRQAQQEAKAQTRE 716 Query: 701 EQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPA 760 E VQETEQEERV+ + PRRK RQL QKVR E +V E VA +V E V AE I A Sbjct: 717 EPVVQETEQEERVQTL-PRRKPRQLAQKVRVESAVVEP--VAEIVPEAVVAEVI-----A 768 Query: 761 PRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERY 820 P +E VK LP ++ +Q E N ++R+ GMPRRSRRSPRHLRVSGQRRRRYRDERY Sbjct: 769 PHSEPVKAELPAGVESVADQDE--NGESREANGMPRRSRRSPRHLRVSGQRRRRYRDERY 826 Query: 821 PTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQE------------EVHVQ 868 PTQSPMPLTVACASPE+ASGKVWIRYP+VRPQD Q EE + Q+ V V Sbjct: 827 PTQSPMPLTVACASPEMASGKVWIRYPVVRPQDQQPEEVQVQDASVAKTVEAVAAPVAVV 886 Query: 869 PMVTEVPVA---AAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAA---- 921 VT PV A +EPV + PVV E PV AEP Sbjct: 887 ETVTAAPVTVEPATMEPVTAEPVVVE-------PVAAAEPLVVDAAEVVAPAAVEPAPQE 939 Query: 922 -VTEQPQVITESDVAVAQEVAEQAEP-VVEPQ--EET----ADIEEVVETAEVVVAEPEV 973 VTE P V E+ A+A V AEP VVEP+ E T A +E + AE V P Sbjct: 940 PVTEAPAV--EAPQAIAP-VTLDAEPVVVEPEAVETTPVVAAPVETIAPVAETVEQAPVT 996 Query: 974 VAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTF 1033 A PA PV AE +P V H HATAPMTRAPAP+YVPEAPRHS W RP F Sbjct: 997 EAAPAEPVKAEPPVS-------KPVVVAGHRHATAPMTRAPAPDYVPEAPRHSTWVRPPF 1049 Query: 1034 AFEGKGAAGGHTATHHASAAPARPQPVE 1061 AFEGKGAAGGH+ATH A+A P RPQPVE Sbjct: 1050 AFEGKGAAGGHSATHKATAEPTRPQPVE 1077 >UniRef50_Q46977 RNase E (Fragment) n=11 Tax=Enterobacteriaceae RepID=Q46977_ECOLX Length = 537 Score = 1034 bits (2673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 537/537 (100%), Positives = 537/537 (100%) Query: 498 LSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKA 557 LSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKA Sbjct: 1 LSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKA 60 Query: 558 APATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRR 617 APATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRR Sbjct: 61 APATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRR 120 Query: 618 DRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRR 677 DRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRR Sbjct: 121 DRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRR 180 Query: 678 ERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAE 737 ERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAE Sbjct: 181 ERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAE 240 Query: 738 EAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRR 797 EAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRR Sbjct: 241 EAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRR 300 Query: 798 SRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVE 857 SRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVE Sbjct: 301 SRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVE 360 Query: 858 EQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEV 917 EQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEV Sbjct: 361 EQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEV 420 Query: 918 IAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQP 977 IAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQP Sbjct: 421 IAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQP 480 Query: 978 AAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFA 1034 AAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFA Sbjct: 481 AAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFA 537 >UniRef50_Q7MM07 Ribonuclease E n=15 Tax=Gammaproteobacteria RepID=Q7MM07_VIBVY Length = 1036 Score = 978 bits (2528), Expect = 0.0, Method: Compositional matrix adjust. Identities = 607/1122 (54%), Positives = 727/1122 (64%), Gaps = 148/1122 (13%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ+EELRVALVDGQRLYDLDIESPGHE KKANIYKG+ITR+EPSLEAAFVDY Sbjct: 1 MKRMLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEIA+EYFP YS GRP+IK+VL EGQEVIVQI+KEERG+KGAALTTFI Sbjct: 61 GAERHGFLPLKEIAKEYFPDGYSYQGRPSIKEVLTEGQEVIVQIEKEERGSKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAGSYLVLMPNNPRAGGISRRIEGD+RTELK AL++LELP+GMGLIVRTAGVGKSAE L Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSTLELPQGMGLIVRTAGVGKSAEEL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 +WDL+ LKHW AIK A+ES PAPFLIHQESNVIVRA RDYLR+DIGEILID+ + E A Sbjct: 181 EWDLNVLLKHWAAIKDASESNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++HI L RPDF +++K Y GE+PLFSHYQIESQIESAFQREVRLPSGGSIVID TEALT Sbjct: 241 KEHI-QLVRPDFVNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALT 299 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSARAT+GGDIEETA NTNLEAADEIARQLRLRDLGGL+VIDFIDMTPVRHQR VE Sbjct: 300 SIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVE 359 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NRLREAVR DRAR+QI ISRFGLLEMSRQRLSPSL E+SHH+CPRCSGTG VRDNESL+ Sbjct: 360 NRLREAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLA 419 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LS+LRLIEEEALK+NT +V A+VPVPIASYLLNEKR +VN IE Q+ V+ +VPN ME Sbjct: 420 LSVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIERIQE-VKITVVPNSDME 478 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHE---EAMALPSEEEFAERKRPEQPALATFAMPDV 537 TPH+ V+RVR+GEE LSY+LPK E EA S E + K+ E+P L F Sbjct: 479 TPHFEVIRVREGEEVDLLSYLLPKKLEAMKEAEGKESPETEYKPKKIEEPVLKGF----- 533 Query: 538 PPAPTPAEPAAPVVAPAPKAAPA-----TPAAPAQPGLLSRFFGALKALFSGGEETKPTE 592 A PA V APAPKA A P A +PGL R AL + G E K Sbjct: 534 ------ASPAQSVPAPAPKAVVAKVANEKPQAEEKPGLFGRLIKALGSFLFGSAEEKVE- 586 Query: 593 QPAPKAEAKPERQQDR---------------------RKPRQNNRRDRNERRDTRSERTE 631 A K E K ER++ + R RR RN + + E Sbjct: 587 --AEKTERKDEREKGNRRQKRDRNDRRRNNRDNNRENNRDRDGKRRQRNRDENVVETQDE 644 Query: 632 GSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQ 691 R + +R ++ AQ + ES+ A+V EK Q Sbjct: 645 AIKPRSQQKRKQKPAQNKADNAVESKANAKVAEKG-----------------------LQ 681 Query: 692 QEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSV--AEEAVV--APVVEE 747 A+A +Q Q+T + V+ RR++R+LN+ VR + + AEE ++ APVVE Sbjct: 682 LAAEAQGASKQEGQKTPS--KAEKVKERRQRRKLNKPVRVKDQLEQAEETLMDAAPVVE- 738 Query: 748 TVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRV 807 AE ++ P +E + VVA T + DN +N PRR+RRSPRHLR Sbjct: 739 ---AETFNKQN-TPASEKAE---KVVADTV------DAMDNSENEEKPRRNRRSPRHLRA 785 Query: 808 SGQRRRRYRDERYPTQSPMPLTV---ACASPELASGKVWIRYPIVRPQDVQVEEQREQEE 864 SGQRRRR R + P P + ASPE+A GKV RY P+ V +E+ +EE Sbjct: 786 SGQRRRRGR-----DRRPNPFRLRKGGVASPEMAMGKVMPRYI---PKPVAKKEEMVKEE 837 Query: 865 VHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVA----EPQPEVVETTHPEVIAA 920 V VT V A++ V+ P + ++ + A E +P+ ++ + + A Sbjct: 838 V-----VTAVTAVPAMQGGVACPEMAMGKVIIRRDITSAQTPTETKPKRSKSRNNKPAKA 892 Query: 921 A----VTEQPQV-------ITESDVAVAQEVAEQAEPVVEPQEE-----TADIEEVVETA 964 A VTE+P V I E++V Q++ Q E V +P E+ T + E+VET Sbjct: 893 AVVEVVTEEPTVENAVVAPIQETEV---QKIEPQVESVSQPVEQVSVETTEVVAEIVETT 949 Query: 965 EVVVAEPEVVAQPAAPVVAEVAAEVE-TVAAVEPEVTVEHNHATAPMTRAPAPEYVPE-- 1021 E VVAE E + VA E E TVA VE + V A+APMT+AP P+ + E Sbjct: 950 E-VVAEVESATET-------VANETEATVAVVESSIKVIKAQASAPMTKAPGPQELIEIQ 1001 Query: 1022 ---APRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPV 1060 AP ++ +A G AG AT ASAA +P+ V Sbjct: 1002 VVAAP----FKAERYAQRG---AGSQVATSQASAAMTKPEMV 1036 >UniRef50_B0BR35 Ribonuclease E n=14 Tax=Pasteurellaceae RepID=B0BR35_ACTPJ Length = 995 Score = 947 bits (2449), Expect = 0.0, Method: Compositional matrix adjust. Identities = 572/1091 (52%), Positives = 691/1091 (63%), Gaps = 141/1091 (12%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ+EELRVALVDGQRL+DLDIESPGHEQKK+NIYKGKITR+EPSLEAAFVDY Sbjct: 1 MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEI+REYFPA+Y +GRPNIKD+++EGQEVIVQ+ KEERGNKGAALTTFI Sbjct: 61 GAERHGFLPLKEISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAGSYLVLMPNNPRAGGISRRIEGD+R ELKEAL L++PE +GLIVRTAGVGKS E L Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEEL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDL L HWEAIKKAAESRPAPFLIHQES+VIVRA RDYLR+DIGEILIDN K+ E A Sbjct: 181 QWDLKVLLHHWEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + HI L RPDF ++++LY GE+PLFSHYQIESQIESAFQREVRLPSGGSIVID TEALT Sbjct: 241 KNHIR-LVRPDFINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALT 299 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AIDINS+R+TRGGDIEETA NTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR VE Sbjct: 300 AIDINSSRSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE 359 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NR+REA RQDRARIQ S ISRFGLLEMSRQRLSPSL E+S HVCPRC GTG VRDNES++ Sbjct: 360 NRIREATRQDRARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIA 419 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSILRL+EEEA+KENT +VH IVPV IASYLLNEKR A+++IE R D V+ V+VP + ME Sbjct: 420 LSILRLLEEEAIKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHD-VQVVVVPTESME 478 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLH---EEAMALP----SEEEFAERKRPEQPALATFA 533 TPH+ V R+R+ E PTLSY L K + EE L SEE R P Sbjct: 479 TPHFSVYRLRENEVLPTLSYDLAKHYHDREEDTQLNTHTVSEEVLVTRNEP--------- 529 Query: 534 MPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQ 593 V + + + + PAP TP PA+P LLSR +K+ F+ Sbjct: 530 ---VITVESVLQSSELNLQPAP-----TPVEPAKPSLLSRLIAKVKSFFA---------- 571 Query: 594 PAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAET 653 P KAE KP KP+ N+ DR RR+ + +R+ R+Q Q Q Sbjct: 572 PEEKAEEKP-------KPKARNQHDRRNRRERPNRV---------DRQERKQTQAQ---- 611 Query: 654 RESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERV 713 DEQ+A R+ER++ RN+ K+ +Q + E VQET+ E+R Sbjct: 612 ----------------DEQKAQRQERNQERNEAKKARRQVVE----EVAGVQETQTEQRS 651 Query: 714 RP---VQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPL 770 RR++R L +KVR E A A P + +PI + + + + Sbjct: 652 NKDNATTERRQRRDLRKKVRVENVEASVATTEP------STQPIEE-----KVQNIAQIQ 700 Query: 771 PVVAQ-TAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLT 829 P+VAQ T PE E D R+NG R RR PRHLRV QRRR + + + MPL Sbjct: 701 PLVAQETQPETVNEERQDVRENG----RQRRLPRHLRVGNQRRRDNNNRKENVVAAMPLA 756 Query: 830 VACASPELASGKVWIRY--PIV----------RPQDVQVEEQREQEEVHVQPMVTEVPVA 877 A ASPE+ASGK+W+++ P+ + + + V+E EQ+ V Sbjct: 757 AAVASPEMASGKIWVKFSEPVSTNKPNSKAEEKARFLSVDEMLEQQTTEVN--------- 807 Query: 878 AAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVA-- 935 EP+V + + A V V + Q + +++ + ES+ A Sbjct: 808 ---EPIVESNIENNSASSVAPVVGFIKQQSD------RDLVKENKARLHHQVEESEQADE 858 Query: 936 --VAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVA 993 V + +A+ P+ + +D + V E E V Q AP + AE +V Sbjct: 859 QLVEKAMAKHVAPLGGFVSQHSDRDLVKEKNERVQKFQAQATQ--APAIGNATAEAISVP 916 Query: 994 AVEPEVTVEHN----------HATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGG 1043 + N H A MT A APE E ++W + + F GKG G Sbjct: 917 VSNYQSDYSFNGRLGTFSRVMHTKAEMTVASAPEKALETVTVNEWTQSKYYFYGKGFGGH 976 Query: 1044 HTATHHASAAP 1054 +A H +AP Sbjct: 977 SSAVSHVHSAP 987 >UniRef50_Q8K9J9 Ribonuclease E n=5 Tax=Buchnera aphidicola RepID=RNE_BUCAP Length = 968 Score = 878 bits (2268), Expect = 0.0, Method: Compositional matrix adjust. Identities = 402/536 (75%), Positives = 465/536 (86%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQQEELRVALVDGQRLYDLDIES EQKK+NIYKGKITRIEPSLEA F+DY Sbjct: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESSRSEQKKSNIYKGKITRIEPSLEAVFIDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G E+HGFLPLKEI++ YFP NY+ R NIKD+LREGQE+IVQI+KEERG KGAALTTFI Sbjct: 61 GMEKHGFLPLKEISKNYFPENYNCDVRLNIKDILREGQELIVQINKEERGTKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LAGSYLVLMPNNP+ GISRR+EG DR ELKE L+SL++PE MGLI+RTAGVGKS ++L Sbjct: 121 TLAGSYLVLMPNNPKIAGISRRVEGSDRIELKELLSSLKIPEKMGLIIRTAGVGKSIKSL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDLS RLKHW AIKKA++ + APFLI+QESNVIVRAFRDYLRQDIGEILIDNPK+L++A Sbjct: 181 QWDLSLRLKHWNAIKKASKKKSAPFLIYQESNVIVRAFRDYLRQDIGEILIDNPKILDIA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 R+HI ALGRPDF +KIKLYTGEIPLFS+YQIESQI+SAFQR+VRLPSGGSI++D+TEALT Sbjct: 241 REHITALGRPDFINKIKLYTGEIPLFSYYQIESQIDSAFQRKVRLPSGGSIMVDTTEALT 300 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AIDINS+R+TRG DIE TAFNTNLEA +EI+RQLRLRDLGGLIVIDFIDMT + HQ+ +E Sbjct: 301 AIDINSSRSTRGADIETTAFNTNLEAVEEISRQLRLRDLGGLIVIDFIDMTTISHQKIIE 360 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N+LRE VR+DRARIQI HIS+FGLLEMSRQRLS SLGESSHH+CPRC+GTGT+RDNESLS Sbjct: 361 NKLREIVREDRARIQIGHISKFGLLEMSRQRLSSSLGESSHHICPRCTGTGTIRDNESLS 420 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSILRLIEEEALKENT EVHAIVP+ IA YLLNEKR AV AIE RQ G + +IVPN M+ Sbjct: 421 LSILRLIEEEALKENTYEVHAIVPIEIACYLLNEKREAVYAIEKRQAGGKTIIVPNKNMK 480 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPD 536 TPHY V R+RKGE+ ++SY L + + + ++E ++K L ++ D Sbjct: 481 TPHYLVSRIRKGEQIRSMSYCLSNVRKNKIFNNIKKEIVDKKHKLNSTLTNISLSD 536 >UniRef50_P44443 Ribonuclease E n=98 Tax=Gammaproteobacteria RepID=RNE_HAEIN Length = 935 Score = 864 bits (2232), Expect = 0.0, Method: Compositional matrix adjust. Identities = 443/621 (71%), Positives = 501/621 (80%), Gaps = 38/621 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ+EELRVALVDGQRL+DLDIESPGHEQKKANIYKGKITR+EPSLEAAFVDY Sbjct: 1 MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEIAREYFP +Y GRPNI+D+L EGQEVIVQ++KEERGNKGAALTTF+ Sbjct: 61 GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDILVEGQEVIVQVNKEERGNKGAALTTFV 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAGSYLVLMPNNPRAGGISRRIEGD+RTELKEAL+SL++P+G+GLIVRTAGVGKS E L Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSSLDVPDGVGLIVRTAGVGKSPEEL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDL L HWEAIK+A++SRPAPFLIHQES+VIVRA RDYLR+DIGEILID+PK+ E A Sbjct: 181 QWDLKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++HI L RPDF +++KLY GE+PLFSHYQIESQIESAFQREVRLPSGGSIVID TEALT Sbjct: 241 KEHI-KLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALT 299 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AIDINSAR+TRGGDIEETA NTNLEAADEIARQLRLRDLGGL+VIDFIDMTP+RHQR VE Sbjct: 300 AIDINSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVE 359 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NR+R+AVR DRARIQIS ISRFGLLEMSRQRLSPSLGESSHH+CPRC GTG VRDNESLS Sbjct: 360 NRIRDAVRPDRARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLS 419 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSILRL+EEEALKENT++VH IVPV IASYLLNEKR A++ IE R + V ++ PN+ ME Sbjct: 420 LSILRLLEEEALKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHN-VDIIVAPNEAME 478 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRP-----EQPAL--ATFA 533 TPH+ V R+R GEE LSY L K+H A +EE R EQPA+ A A Sbjct: 479 TPHFSVFRLRDGEEVNELSYNLAKIH-CAQDENTEESLLSRNVETTAVIEQPAVESAVVA 537 Query: 534 MPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQ 593 + APTP E + +P LL++ +K LF+ E Sbjct: 538 LSISEAAPTPVERKS-----------------NEPSLLAKIIAKIKGLFATKSE------ 574 Query: 594 PAPKAEAKPERQQDRRKPRQN 614 E KP+ + R P +N Sbjct: 575 -----ENKPKNNRTSRNPNRN 590 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 79/263 (30%), Positives = 110/263 (41%), Gaps = 55/263 (20%) Query: 801 SPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVR-PQD---VQV 856 +PRHLR + +RRR E +SPMPL A SPELASGK WI Y V P++ + V Sbjct: 721 TPRHLRAANNQRRRRDQE---PKSPMPLFAAVVSPELASGKAWIDYSTVNLPKENHFLSV 777 Query: 857 EEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPE 916 +E EQE+ I P + V E+ V A + +P E V+ E Sbjct: 778 DELLEQEKTK----------KGFITPAMGIVVEEKSPDVKPALDFITQPANESVQKKVQE 827 Query: 917 VIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQ 976 + + +PQ EV E +P + V EPE + + Sbjct: 828 SLDRLSSYKPQ-----------EVVESIDPAIN------------------VDEPETLEK 858 Query: 977 PAAPV-VAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAF 1035 + V E + T+++V H A MT A A + +PE WQ + F Sbjct: 859 VSKFVRTYEFNGRLGTISSVP--------HTKAEMTLAKANDEMPEDFPIRAWQDSRYYF 910 Query: 1036 EGKGAAGGHTATHHASAAPARPQ 1058 GKGAAG H A H + P R + Sbjct: 911 YGKGAAGHHCAISHVYSEPTRTK 933 >UniRef50_A8FWL8 Ribonuclease, Rne/Rng family n=38 Tax=Gammaproteobacteria RepID=A8FWL8_SHESH Length = 1201 Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust. Identities = 475/866 (54%), Positives = 582/866 (67%), Gaps = 76/866 (8%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EELRVALVDGQ+LYDLDIESPGHEQKKANIYKGKITR+EPSLEAAFVDY Sbjct: 1 MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GA+RHGFLPLKEIAREYFP YS GRPNIK+V++EGQEVIVQIDKEERGNKGAALTTFI Sbjct: 61 GADRHGFLPLKEIAREYFPKGYSFQGRPNIKEVVKEGQEVIVQIDKEERGNKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAGSYLVLMPNNPRAGGISRRIEGD+RTELK A++ LE+P+GMGLIVRTAGVGK + L Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDERTELKAAMSELEVPQGMGLIVRTAGVGKDSAEL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 +WDL HW AIK+A+E RPAPFLIHQESNVIVRA RDYLR+D+GE+LID+P++ E A Sbjct: 181 KWDLKVLEHHWTAIKEASEGRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEDA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 +QH+ AL RPDF +IK Y E+PLF+H+QIE+QIESAFQREVRLPSGGSIVID TEALT Sbjct: 241 KQHV-ALVRPDFVDRIKQYDAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALT 299 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSARAT+GGDIEETA NTNLEAADE+ARQLRLRDLGGL+VIDFIDMTPVRHQR VE Sbjct: 300 SIDINSARATKGGDIEETALNTNLEAADEVARQLRLRDLGGLVVIDFIDMTPVRHQREVE 359 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NR+R+AV DRAR+Q+ ISRFGL+EMSRQRL PSL ES+ H+CPRC G GT+R ESL+ Sbjct: 360 NRMRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLA 419 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSILRL+EEEA+KENT ++ A VPV +A++LLNEKR A+ E R D V ++P+ M Sbjct: 420 LSILRLMEEEAIKENTSQIEATVPVDVAAFLLNEKRKAIRITEQRHD-VEVYVIPDPNMT 478 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TP Y V+R RK ++ SY L E + P + ER P QPAL F+ P V Sbjct: 479 TPDYRVVRHRKDDQISESSYKLLDQPEAKLYEPRK---LERAAPPQPALKGFSAP-VKEV 534 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSG------------GEET 588 P+ V + K A+PGL+S+ F A+ ALF Sbjct: 535 EKPSSIKKDVKTESKK--------DAEPGLISKLFSAISALFKPEEKKEEPKKKPQSNRD 586 Query: 589 KPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNR-RQAQ 647 R+ K + +++ RN R +S + SD E+ R + QA+ Sbjct: 587 SQNRNNRRNTRRNDNRRNRDDKDQASDKGARNSR--NKSADSAKSDKVEKQVRGKDEQAK 644 Query: 648 QQTAETRESRQQAEVTEKARTADEQQAPRRE-------------RSRRRNDDKRQAQQEA 694 +Q+ +SR+ A+ ++ A+ ++ P++E + R N+ QAQ E Sbjct: 645 RQSRNDSKSRRPAQESD----AESKEQPKQEVARERRQRRNMRRKVRVENE---QAQVEE 697 Query: 695 KALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVE-------- 746 + + E V+ EE+ +P+R+ R+ N K + +Q +EA A VE Sbjct: 698 TQV-LAETPVKAAVSEEKT--TRPKRQPRKSN-KPKPQQEATQEAQAATQVEAEVSDISL 753 Query: 747 -ETVAAE--------PIVQEAPAPRTELVKVPLPVVAQTAPEQQEE------NNADNRDN 791 ETV E + Q AP + P+ Q EE ++ + R+ Sbjct: 754 TETVKTETLEAKVEAKVEQTAPVAVDSIQTTPVTDADQVEISSSEEVEVEATDDKEQREP 813 Query: 792 GGMPRRSRRSPRHLRVSGQRRRRYRD 817 RRSRRSPRHLR +GQRRRR D Sbjct: 814 REGQRRSRRSPRHLRAAGQRRRRDED 839 >UniRef50_Q492Q0 Ribonuclease E n=1 Tax=Candidatus Blochmannia pennsylvanicus str. BPEN RepID=Q492Q0_BLOPB Length = 866 Score = 851 bits (2198), Expect = 0.0, Method: Compositional matrix adjust. Identities = 394/502 (78%), Positives = 449/502 (89%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQQEELRVALVDGQRLYDLDIE+ GHEQKK+NIYKGKI RIEPSLEA FVDY Sbjct: 1 MKRMLINATQQEELRVALVDGQRLYDLDIETVGHEQKKSNIYKGKIIRIEPSLEAVFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ERHGFLP+KEI+ EYF ++ S++ + NIK++L EGQE+IVQIDKEERGNKGAALTTFI Sbjct: 61 GVERHGFLPIKEISHEYFLSSPSSYNKFNIKEILCEGQELIVQIDKEERGNKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAGSYLVLMPNNP++ GISRRIEG+DR LKE L++LELPEGM LI+RTAG+GKS EAL Sbjct: 121 SLAGSYLVLMPNNPKSSGISRRIEGNDRIGLKEILSTLELPEGMSLIIRTAGLGKSIEAL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 +WDL+ RL+HW+ IK A APFLIHQ+SNVIVRAFRDYLR DIGEILIDNPK++ LA Sbjct: 181 EWDLTSRLQHWKTIKNTAAKHLAPFLIHQDSNVIVRAFRDYLRPDIGEILIDNPKIMHLA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++HI +LGRPDF+ KIK Y G+IPLFSHYQIESQIESAFQREVRLPSGGSIVID+TEALT Sbjct: 241 KEHITSLGRPDFTKKIKFYNGDIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT 300 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AIDINSAR+T+G DIE+TAF+TNLEA DEIARQLRLRD+GGLIVIDFIDMTP+RHQR +E Sbjct: 301 AIDINSARSTKGTDIEDTAFHTNLEATDEIARQLRLRDVGGLIVIDFIDMTPIRHQREIE 360 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N L+ AV QDRARIQI HIS+FGLLE+SRQRLS SLGESSHH+CPRCSGTG++RDNESLS Sbjct: 361 NSLKIAVHQDRARIQIGHISKFGLLELSRQRLSTSLGESSHHICPRCSGTGSIRDNESLS 420 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSILRLIEEEALK+NT EVHAIVPV IASYLLNEKR A++ IE RQ GVR +IVP +QM+ Sbjct: 421 LSILRLIEEEALKDNTYEVHAIVPVAIASYLLNEKRKAISDIEQRQKGVRAIIVPYEQMK 480 Query: 481 TPHYHVLRVRKGEETPTLSYML 502 TP+Y + R+RKGE SY+L Sbjct: 481 TPNYEIRRIRKGETYNKPSYLL 502 >UniRef50_C9R616 Ribonuclease E (RNase E) n=2 Tax=Gammaproteobacteria RepID=C9R616_AGGAD Length = 960 Score = 847 bits (2187), Expect = 0.0, Method: Compositional matrix adjust. Identities = 425/557 (76%), Positives = 473/557 (84%), Gaps = 15/557 (2%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 MLINATQ+EELRVALVDGQRL+DLDIES GHEQKKANIYKGKITR+EPSLEAAFVDYGAE Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYGAE 60 Query: 64 RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLA 123 RHGFLPLKEIAREYFP+ Y GRPNI+D++ EGQEVIVQ++KEERGNKGAALTTF+SLA Sbjct: 61 RHGFLPLKEIAREYFPSGYVYQGRPNIRDIISEGQEVIVQVNKEERGNKGAALTTFVSLA 120 Query: 124 GSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWD 183 GSYLV+MPNNPRAGGISRRIEGD+R ELK+AL+SL++PEG+GLIVRTAGVGKS E LQWD Sbjct: 121 GSYLVIMPNNPRAGGISRRIEGDERLELKDALSSLDVPEGVGLIVRTAGVGKSPEELQWD 180 Query: 184 LSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQH 243 L L HWEAIK+A++SRPAPFLIHQES+VIVRA RDYLR+DIGEILID+ +V E A+ H Sbjct: 181 LKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAH 240 Query: 244 IAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAID 303 I L RPDF +++KLY GE+PLFSHYQIESQIESAFQREVRLPSGGSIVID TEALTAID Sbjct: 241 I-KLVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAID 299 Query: 304 INSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL 363 INSAR+TRGGDIEETA NTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR VENR+ Sbjct: 300 INSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRV 359 Query: 364 REAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSI 423 R+AVRQDRARIQIS ISRFGLLEMSRQRLSPSLGESSHHVCPRC GTG +RDNESLSLSI Sbjct: 360 RDAVRQDRARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSI 419 Query: 424 LRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPH 483 LRL+EEEALKENT++VH IVPV IASYLLNEKR A+++IE R V ++VPN+ METPH Sbjct: 420 LRLLEEEALKENTKQVHTIVPVQIASYLLNEKRKAIHSIEKRH-TVDILVVPNEAMETPH 478 Query: 484 YHVLRVRKGEETPTLSYMLPKLHE-EAMALPSEEEFAERKRPEQPALATFAMPDVPPAPT 542 + V RVR GEE LSY L +LH+ + +EE R D PA T Sbjct: 479 FSVFRVRDGEEVNELSYNLARLHQGQDEIFVAEESLISRN------------IDTTPAET 526 Query: 543 PAEPAAPVVAPAPKAAP 559 P +A V P AP Sbjct: 527 PVVESAAVSLSIPMPAP 543 >UniRef50_Q2SK60 Ribonucleases G and E n=3 Tax=Gammaproteobacteria RepID=Q2SK60_HAHCH Length = 1056 Score = 764 bits (1974), Expect = 0.0, Method: Compositional matrix adjust. Identities = 395/693 (56%), Positives = 499/693 (72%), Gaps = 39/693 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EELRVALVDGQ+LYDLDIES EQKK+NIYKGKITRIEPSLEAAFVD+ Sbjct: 1 MKRMLINATQPEELRVALVDGQKLYDLDIESGTREQKKSNIYKGKITRIEPSLEAAFVDF 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEI+REYF + G+ NIKD+L+EGQE+I+Q+DKEERGNKGAALTTFI Sbjct: 61 GAERHGFLPLKEISREYFKSQPQKGGKMNIKDLLQEGQEIIIQVDKEERGNKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPRAGGISRRIEGDDR +LK+A++ L +P+ MGLI+RTAGVG+S++ L Sbjct: 121 SLAGRYLVLMPNNPRAGGISRRIEGDDRDQLKDAMSGLTVPKDMGLIIRTAGVGRSSKEL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q DL + L+ W++I+ A++S+PAPFLI+QESNV++RA RDYLRQDIGE+LID+P+V + A Sbjct: 181 QRDLDYLLQFWDSIRHASDSKPAPFLIYQESNVVIRATRDYLRQDIGEVLIDHPQVHQDA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + A+ P+F ++IKLY +IPLF+ YQIESQIE+AFQREV+LPSGGSIVID TEAL Sbjct: 241 LNFVKAV-MPNFENRIKLYQDDIPLFNRYQIESQIETAFQREVKLPSGGSIVIDPTEALV 299 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSARAT+GGDIEETA TNLEAADEIARQLRLRD+GGLIVIDFIDMTP ++QR VE Sbjct: 300 SIDINSARATKGGDIEETALQTNLEAADEIARQLRLRDIGGLIVIDFIDMTPNKNQREVE 359 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NRL+EA+ DRAR+QI ISRFGLLEMSRQRL PSLGE+ + +CPRC G G++R ESL+ Sbjct: 360 NRLKEALELDRARVQIGKISRFGLLEMSRQRLRPSLGETRNEMCPRCKGQGSIRGVESLA 419 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LS++RLIEEEA KE T EV AI P+ +A+YLLNEKR + + R GV+ ++VPN M+ Sbjct: 420 LSVMRLIEEEAFKERTAEVRAICPISVATYLLNEKRENLAKTQKRH-GVKVIVVPNSHMD 478 Query: 481 TPHYHVLRVRKGEETPT-LSYML-PKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVP 538 TPH+ V R+R + +SY + P++ E+ P E + ++ A+ T Sbjct: 479 TPHFEVQRIRDDNANVSEISYNVRPEMEEKN---PVESLLHKEVVRQEAAVKTIV----- 530 Query: 539 PAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKA 598 P+ TP P+ V GLL R + +FSG E K ++ A Sbjct: 531 PSSTPTPPSEEV------------------GLLKRLRQKVSKMFSG--EKKDSDLKITVA 570 Query: 599 EAKPERQQD----RRKPRQNNRRD--RNERRDTRSERTEGSDNREENRRNRRQAQQQTAE 652 E+ P+ QD RRK + +R+D R+ +R S + E D ++NRR R + Sbjct: 571 ES-PQTSQDKDAGRRKVKVRDRQDGQRDNQRQGDSRQAESRDGGQDNRRGNRGRNDDRNQ 629 Query: 653 TRESRQQAEVTEKARTADEQQAPRRERSRRRND 685 R R + + R D + + R RN+ Sbjct: 630 RRNERNDGQKDRRQRDRDSSKGDSQRDQRGRNE 662 >UniRef50_Q1QX63 Ribonuclease E n=5 Tax=Gammaproteobacteria RepID=Q1QX63_CHRSD Length = 1175 Score = 763 bits (1969), Expect = 0.0, Method: Compositional matrix adjust. Identities = 397/652 (60%), Positives = 488/652 (74%), Gaps = 17/652 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EELRVALVDGQRLYDLDIES EQKKANIY+G+ITRIEPSLEAAFVD+ Sbjct: 1 MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGRITRIEPSLEAAFVDF 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEI+REYF S GRPNIK+VL+EGQEVIVQ+DKEERGNKGAALTTFI Sbjct: 61 GAERHGFLPLKEISREYFTKEPS--GRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFI 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG +LVLMPNNPRAGGISRRIEGDDR +LK+A+ L +P+ MG+IVRTAG+G+S E L Sbjct: 119 SLAGRFLVLMPNNPRAGGISRRIEGDDRAQLKDAMGQLTVPDKMGVIVRTAGIGRSPEEL 178 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWD+ + ++ WEAI + A R APFLI++ESNVI+RA RDYLR DIGE+LID+P+V E A Sbjct: 179 QWDMDYLVQVWEAITEEAGKRSAPFLIYRESNVIIRAMRDYLRHDIGEVLIDSPEVHEEA 238 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 I + P + +KIKLY ++PLFS +QIESQIE+A+QREV+LPSGG++VID TEAL Sbjct: 239 LHFIRQV-MPSYQNKIKLYADDVPLFSRFQIESQIETAYQREVKLPSGGAVVIDHTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSARATRG DIEETA TNLEAADEIARQLRLRD+GGL+VIDFIDMTP ++QR VE Sbjct: 298 SIDINSARATRGSDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMTPAKNQREVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NR+R+A++ DRAR+QI ISRFGL+EMSRQRL PSLGE+S VCPRC+G GT+RD S+S Sbjct: 358 NRVRDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSIS 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSI+RLIEEEA+KE + ++ AI+PVP+A+YLLNEKRS +N IE RQ GV+ V++PN M+ Sbjct: 418 LSIMRLIEEEAMKERSSQIRAILPVPVATYLLNEKRSVLNDIEQRQ-GVQVVLLPNPDMD 476 Query: 481 TPHYHVLRVRKG----EETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPD 536 TPHY V R+R E+ S+ LP E L E + A K ++ A ++ Sbjct: 477 TPHYDVQRLRDDQVSEEDGQRSSFELPTTTE----LTQEPDPALDKPMQRAEAAVKSVAH 532 Query: 537 VPPAPTPA--EPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQP 594 PAPT + A P AA A + PA+ GL SR L L +G + T P++Q Sbjct: 533 NAPAPTSLQHDTAPPATPTPAPAADAPASTPAESGLFSRLVKGLGKLLNGEDSTSPSKQS 592 Query: 595 APKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQA 646 +A+ + RQ R+ ++ +RS+ GS R +N +RR A Sbjct: 593 NDQAQQSGASKTTSEARRQ--RQGSDQSSTSRSDGDTGSKQR-QNDDSRRDA 641 >UniRef50_C7RBE6 Ribonuclease, Rne/Rng family n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RBE6_KANKD Length = 951 Score = 748 bits (1932), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/661 (58%), Positives = 474/661 (71%), Gaps = 38/661 (5%) Query: 1 MKRMLINAT-QQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 M+RMLINAT EELRVALVDGQRLYDLDIE G EQKK NIYKGK+TRIEPSLEAAFVD Sbjct: 1 MRRMLINATNHHEELRVALVDGQRLYDLDIELAGREQKKGNIYKGKVTRIEPSLEAAFVD 60 Query: 60 YGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 YGAERHGFLPLKE+AREY N + GRP IK+ L+EGQE+IVQIDKEERGNKGAALTT Sbjct: 61 YGAERHGFLPLKEVAREYM-QNAPSRGRPTIKEALKEGQEIIVQIDKEERGNKGAALTTS 119 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ISLAGSYLVLMPNNPRAGGISRRIEGD+RTELK+ ++ L +P GMG IVRTAG+GKS E Sbjct: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDERTELKQVMSQLPVPNGMGCIVRTAGIGKSLEE 179 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 +Q+D ++ + W IK+ A +RPAPFLI QES+VI RA RDYLR DIGEI+ID P++ E Sbjct: 180 IQYDFNYLIDTWNGIKQVAGTRPAPFLITQESDVITRAIRDYLRPDIGEIIIDRPEIYER 239 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + + RPDF SK+KLY EIPLF+ YQ+ESQIESAFQREVRLPSGGS+V D TEAL Sbjct: 240 VKSELQ-YQRPDFVSKVKLYRDEIPLFNRYQVESQIESAFQREVRLPSGGSVVFDQTEAL 298 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +IDINSARAT+GGDIEETA +TN+EAA+EIARQLRLRD+GGLIVIDFIDM P R+QR V Sbjct: 299 LSIDINSARATKGGDIEETALHTNVEAAEEIARQLRLRDIGGLIVIDFIDMGPPRNQREV 358 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 E L+++V +DRARIQI ISRFGLLEMSRQRL PSL ESS HVCPRC+G+G +R +SL Sbjct: 359 ERVLKDSVARDRARIQIGRISRFGLLEMSRQRLRPSLEESSQHVCPRCTGSGVIRGTDSL 418 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 +LSILRL+E+EA+KE+T EV A+VPV +A++LLNEKR + IE RQ VR V+VPN + Sbjct: 419 ALSILRLMEDEAMKESTAEVQAVVPVEVATFLLNEKRRKIEQIEKRQK-VRLVVVPNPYL 477 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPP 539 ETPHY VLRV+ GE SY L E + S ++ P Sbjct: 478 ETPHYEVLRVKAGETLEDSSYSLIGDAPEIELVRSSKQ---------------------P 516 Query: 540 APTPAEPAAPVVAP-APKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKA 598 AP +PA V P +P AP+ +PGL +R + +LF E+ K ++ + Sbjct: 517 APVSDQPALKGVKPTSPPPAPSKAVKKKKPGLFARLW---TSLFGDDEDKKKKDKQSKNN 573 Query: 599 EAKPERQQDRRKPRQNNRRDRNER---------RDTRSERTEGSDNREENRRNRRQAQQQ 649 K +R R R ++ N++ ++ E+ +G DN+ + + R ++Q Sbjct: 574 RGKYDRNTRGRNTRHQGKKRTNQKGRNQTQAQNKNQPQEQRDGKDNKVQQKTGGRPQKKQ 633 Query: 650 T 650 Sbjct: 634 N 634 >UniRef50_C1DR24 Ribonuclease E n=27 Tax=Gammaproteobacteria RepID=C1DR24_AZOVD Length = 1139 Score = 739 bits (1908), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/490 (73%), Positives = 417/490 (85%), Gaps = 4/490 (0%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EELRVALVDGQRLYDLDIES EQKKANIYKG+ITR+EPSLEAAFVD+ Sbjct: 1 MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDF 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEI+REYF S GR NIKDVL EGQEVIVQ++KEERGNKGAALTTFI Sbjct: 61 GAERHGFLPLKEISREYF--KKSPEGRINIKDVLSEGQEVIVQVEKEERGNKGAALTTFI 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPRAGGISRRIEG++R EL+EAL L++P MGLIVRTAG+G+S+E L Sbjct: 119 SLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLDVPADMGLIVRTAGLGRSSEEL 178 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDL + ++ W AIK+A+ R PFLI+QESNVI+RA RDYLRQDIGE+LID+ + E A Sbjct: 179 QWDLDYLVQLWTAIKEASLDRSPPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEA 238 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 I + P ++SKIKLY +PLF+ +QIESQIE+AFQREV+LPSGGSIVID TEAL Sbjct: 239 LSFIRQV-MPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSARAT+GGDIEETA TNLEAA+EIARQLRLRD+GGLIVIDFIDMTP ++QRAVE Sbjct: 298 SIDINSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 +++REA+ DRAR+QI ISRFGLLEMSRQRL PSLGE+S VCPRCSG G +RD ESLS Sbjct: 358 DKMREALEADRARVQIGRISRFGLLEMSRQRLRPSLGETSGIVCPRCSGQGIIRDVESLS 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 L+ILRLIEEEALK+ T EV A VP+P+A++LLNEKR+++ IE R VR VI+P+D ME Sbjct: 418 LAILRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTR-VRIVILPSDHME 476 Query: 481 TPHYHVLRVR 490 TPH+ V R+R Sbjct: 477 TPHFEVQRLR 486 >UniRef50_A3JIF1 Ribonucleases G and E n=2 Tax=Gammaproteobacteria RepID=A3JIF1_9ALTE Length = 1092 Score = 738 bits (1905), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/639 (60%), Positives = 468/639 (73%), Gaps = 16/639 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINAT EELRVALVDGQRL+DLDIES EQKKANIYKGKITR+EPSLEAAFVD+ Sbjct: 1 MKRMLINATHPEELRVALVDGQRLFDLDIESSSREQKKANIYKGKITRVEPSLEAAFVDF 60 Query: 61 GAERHGFLPLKEIAREYFPAN-YSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 GA+RHGFLPLKEI++EYF + G+ NIKDV+ EGQEVIVQ+DKEERGNKGAALTT+ Sbjct: 61 GADRHGFLPLKEISKEYFKKSPGQIEGKVNIKDVIAEGQEVIVQVDKEERGNKGAALTTY 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ISLAG YLVLMPNN RAGGISRRIEG++R +LKEA+ +++P+ MG+IVRTAG+G+++E Sbjct: 121 ISLAGRYLVLMPNNARAGGISRRIEGEERAQLKEAMNQVQVPKSMGIIVRTAGIGRNSEE 180 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 LQWDL + ++ WEAI +AA R APFLIHQESNVI+RA RDYLRQDIGE+LID V E Sbjct: 181 LQWDLDYLVQFWEAITQAAGERKAPFLIHQESNVIIRAVRDYLRQDIGEVLIDAAAVHED 240 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + A+ P F +KIKLY+ EIPLFS YQIE QIE+AFQREV+LPSGGSIVID TEAL Sbjct: 241 VLNFVRAV-MPTFENKIKLYSDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEAL 299 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +IDINS+RAT+G DIEETA TNLEAA+EI RQLRLRD+GGLIVIDFIDMTP R+QR V Sbjct: 300 VSIDINSSRATKGHDIEETALQTNLEAAEEIGRQLRLRDMGGLIVIDFIDMTPARNQREV 359 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 EN++REA+ DRAR+Q+ ISRFGLLEMSRQRL PSLGE+ VCPRC G GT+R ESL Sbjct: 360 ENKMREALEIDRARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIESL 419 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 +LSI+RLI EE+ K+ T EV A+VPV +A++LLNEKR + IE Q+ V VIVP QM Sbjct: 420 ALSIMRLIYEESSKDKTGEVRAVVPVSVATFLLNEKRKQLATIEANQE-VSIVIVPVPQM 478 Query: 480 ETPHYHVLRVRKGEETP--TLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 ETPH+ ++R+R E S+ + + + E EEE A+ E+P A+ V Sbjct: 479 ETPHFEIIRMRDDETGSEHVSSHQVAQEYSE-----REEEVADVTVQEKPVREQAAVKSV 533 Query: 538 PPA-PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAP 596 PA P P P PA AA T G+ SR + F+G EE++P + Sbjct: 534 RPASPVPVPATKPAATPAKAAAEKT----RDEGMFSRLGRKIALFFNGEEESQPAADSSS 589 Query: 597 KAEAKPERQQDRRKPR-QNNRRDRNERRDTRSERTEGSD 634 AK DR + R ++R DR +RR TR R + D Sbjct: 590 NRNAKQAGGDDRSRQRPTSSRNDRQDRRKTRVARDDQQD 628 >UniRef50_C5BU48 Ribonuclease E n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BU48_TERTT Length = 1070 Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust. Identities = 369/604 (61%), Positives = 449/604 (74%), Gaps = 46/604 (7%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EELRVALVDGQ LYDLDIE+ EQ+KANIYKGKITRIEPSLEAAFV+Y Sbjct: 1 MKRMLINATQPEELRVALVDGQWLYDLDIENRLKEQRKANIYKGKITRIEPSLEAAFVEY 60 Query: 61 GAERHGFLPLKEIAREYFPAN-YSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 R+GFLPLKEI+REYF GR IKDV++EG EVIVQ+DKEERGNKGAALTTF Sbjct: 61 DKGRNGFLPLKEISREYFLKQPNEIDGRIRIKDVVKEGMEVIVQVDKEERGNKGAALTTF 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ISLAG YLVLMPNNPRAGGISRRI+GDDR+ELK+AL+ +E+P GMG+IVRTAGVG+SAE Sbjct: 121 ISLAGRYLVLMPNNPRAGGISRRIDGDDRSELKDALSQIEIPNGMGIIVRTAGVGRSAEE 180 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 LQWD+++ W I++AA AP + QESNVI+RA RDYLR DIGE+++D+ Sbjct: 181 LQWDMNYLTTLWNNIQEAANQSTAPAFLFQESNVIIRAIRDYLRPDIGEVIVDDIAAYNQ 240 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 A + + P++ SK+KLY +PLF+HYQIE QIE+AF+REV+LPSGGSIVID TEAL Sbjct: 241 AADFVQMV-MPNYRSKVKLYEKSVPLFNHYQIEGQIETAFEREVKLPSGGSIVIDVTEAL 299 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +IDINS+RAT+GGDIEETA TNLEAADEIARQLRLRD+GGL+VIDFIDM PVR+QRAV Sbjct: 300 VSIDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDMGGLVVIDFIDMQPVRNQRAV 359 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 ENR+R+A++ DRAR+Q+ ISRFGLLEMSRQRL PSLGE++ VCPRCSG GT+R +S+ Sbjct: 360 ENRVRDALKMDRARVQVGRISRFGLLEMSRQRLRPSLGETTSKVCPRCSGQGTIRGTKSI 419 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 +LSILRL+EEEA KE + E+ A+VPVP+A+YLLNEKR +++ IE R R ++PN +M Sbjct: 420 ALSILRLVEEEAQKERSAEIRAVVPVPVATYLLNEKRKSISDIENRHQ-TRVTVLPNTEM 478 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPP 539 TPHY V R+R ++T +SY + H+E D Sbjct: 479 VTPHYEVTRLRDDDDTSEISYTIELNHQEDQ-------------------------DDSS 513 Query: 540 APTPAEPAAPVVAPAP---KAAPATPA------APAQ----PGLLSRFFGALKALFSGGE 586 APT APV P P + AP+ PA APA+ P L++R ALK+LF+ E Sbjct: 514 APT-----APVAMPKPVVQQLAPSQPAPEPVKQAPAKTAEGPSLIARIIDALKSLFAPEE 568 Query: 587 ETKP 590 E KP Sbjct: 569 EAKP 572 >UniRef50_Q0VQP0 Phosphoric diester hydrolase n=5 Tax=Gammaproteobacteria RepID=Q0VQP0_ALCBS Length = 1074 Score = 730 bits (1884), Expect = 0.0, Method: Compositional matrix adjust. Identities = 388/681 (56%), Positives = 480/681 (70%), Gaps = 47/681 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINAT EE+RVALVDGQRLYDLDIE EQKKANIYKGKITR+EPSLEAAFVD+ Sbjct: 1 MKRMLINATHPEEVRVALVDGQRLYDLDIEHRTREQKKANIYKGKITRVEPSLEAAFVDF 60 Query: 61 GAERHGFLPLKEIAREYFPAN-YSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 GAERHGFLPLKEI+R+YF + GR NIK+V++EGQEVIVQ+ KEERGNKGAALTTF Sbjct: 61 GAERHGFLPLKEISRQYFQKDPKDIQGRINIKEVIKEGQEVIVQVAKEERGNKGAALTTF 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ISLAG YLVLMPNNPRAGGISRRIEG++R +LKEAL +L +P+ MG+IVRTAG+G+SAE Sbjct: 121 ISLAGRYLVLMPNNPRAGGISRRIEGEERAQLKEALGALNIPDEMGVIVRTAGLGRSAEE 180 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 LQWDL++ LK W +I A++ R APFLI+QESNVI+RA RDYLR+DIGE+LID+ KV + Sbjct: 181 LQWDLNYLLKLWTSIDDASQDRKAPFLIYQESNVIIRAIRDYLRKDIGEVLIDSKKVYDE 240 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 A+ + + + DF KIKLY E PLFS +QIESQIE+AF+REV+LPSGGSIVID TEAL Sbjct: 241 AQGFVQQVMQ-DFQHKIKLYDDETPLFSRFQIESQIETAFEREVKLPSGGSIVIDPTEAL 299 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +IDINS+RAT+G DIEETA TNLEAA+EIARQLRLRD+GGLIV+DFIDM P R+QR V Sbjct: 300 VSIDINSSRATKGADIEETALQTNLEAAEEIARQLRLRDIGGLIVVDFIDMGPARNQRDV 359 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 ENR+R+A+ DRARIQ+ ISRFGLLE+SRQRL PSLGE+S VCPRC G G +RD +SL Sbjct: 360 ENRMRDALEADRARIQLGRISRFGLLELSRQRLRPSLGETSSIVCPRCDGQGHIRDVKSL 419 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 +LSILRLIEEE +KE T E+ A VPV +A+YLLNEKR + AIE + VR VI+PN + Sbjct: 420 ALSILRLIEEEVMKERTGEIQAQVPVAVATYLLNEKRDPLRAIE-KNHKVRVVIIPNQNL 478 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPP 539 +TPH+ V R+R + + LS+ + L A + + E K ++PA+ A PD Sbjct: 479 DTPHFEVERIRDDQTSTQLSHEMDLLEGTKDADIASAQDTEIKT-QEPAVRLMA-PDT-- 534 Query: 540 APTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPT----EQPA 595 P A A GLL+R F L +F+ E KP + P Sbjct: 535 ----------APPPPKPVVAAPTAQVQNLGLLARLFSWLAQVFTA--EPKPAKAKKDAPQ 582 Query: 596 PKAEAKPER----------------------QQDRRKPRQNNRRDRNERRDTRSERTEGS 633 K++ KP + + D R R + N+ R+TR++R Sbjct: 583 RKSDNKPRQQQNNRGRGGNNRNDSNNSDNRAKNDNRNKRDGGKAGDNDNRNTRNKRQNDK 642 Query: 634 DNREENRRNRRQAQQQTAETR 654 D+ +N + RQA + A+ R Sbjct: 643 DSGRKN--DNRQADNRAADNR 661 >UniRef50_Q1YTQ8 Ribonuclease E n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTQ8_9GAMM Length = 1008 Score = 727 bits (1876), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/709 (54%), Positives = 494/709 (69%), Gaps = 42/709 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINA+ EE+RVA+VDGQ+LYDLDIE+ EQKKANIYKGKITR+EPSLEAAFVDY Sbjct: 1 MKRMLINASHTEEVRVAMVDGQKLYDLDIENRTREQKKANIYKGKITRVEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GA+RHGFLPLKEI+REYF S GR NIKD +REGQE+ VQ++KEERG+KGAALTTFI Sbjct: 61 GADRHGFLPLKEISREYFKGKSSDGGRVNIKDAIREGQEIFVQVEKEERGSKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPRAGGISRRIEG++R +L+EA+ L++PEGMG IVRTAG+G++ E L Sbjct: 121 SLAGRYLVLMPNNPRAGGISRRIEGEERADLREAMRGLDIPEGMGAIVRTAGIGRATEEL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDL + L+ W I+ AE AP + QESNVIVRA RDYLRQD+GE+++D+ LA Sbjct: 181 QWDLDYLLQLWNTIEAEAEGAKAPHFLFQESNVIVRAIRDYLRQDVGEVIVDSQDAYNLA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 I + PDF++K+K Y +IPLF+ YQIE+QIE+AF+REV LPSGGSIVID TEA+ Sbjct: 241 AAFIGTV-MPDFTNKVKFYQEQIPLFNRYQIENQIETAFRREVSLPSGGSIVIDITEAMV 299 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSARAT+GGDIEETAFNTN EAA+E+ARQLRLRD+GGLIVIDFIDM RHQ+ VE Sbjct: 300 SIDINSARATKGGDIEETAFNTNKEAAEEVARQLRLRDVGGLIVIDFIDMLNTRHQKEVE 359 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N +REA++ DRAR+Q+ ISRFGLLEMSRQRL PSL E+ +CPRC G GT+R SL+ Sbjct: 360 NTIREALKIDRARVQVGRISRFGLLEMSRQRLRPSLEETMSKICPRCKGQGTIRGTRSLA 419 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSILRLIEEEA KE ++E+ AIVPV +A++LLNEKRS + IE+R + + V++PN QME Sbjct: 420 LSILRLIEEEAQKEFSKEIRAIVPVSVATFLLNEKRSEIADIESR-NKINVVVLPNTQME 478 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRP---EQPALATFAMPDV 537 TPH+ V+R+R ++ + KL E + E++ P +PA+ T V Sbjct: 479 TPHFEVVRIRAQDDDDSDGEFSYKLAHELSSKEPEQDLERTSAPLPISEPAVKTL----V 534 Query: 538 PPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPK 597 P P AP++ A +PGLL R + +++F GG T Sbjct: 535 PHKP------APIMPEKAAPTAAAAVKTEKPGLLKRIW---ESIF-GGSST--------- 575 Query: 598 AEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESR 657 EAK + + +PR +N R + +D+R+ + NR + + + +S Sbjct: 576 -EAKKTEDEKKTRPRGSNSRRGGQNQDSRNRQG------NRRPNNRNRNRNRNEGRNDSN 628 Query: 658 QQAEVTE-KARTADEQQAPRRERSRRRNDDKR-QAQQEAKALNVEEQSV 704 + AE TE +A++AD+Q + R RND R A+Q+ + V+ S Sbjct: 629 RDAEGTETQAKSADKQG-----QGRGRNDQSRPAAKQDTREQKVDSAST 672 >UniRef50_Q0A8Q8 Ribonuclease E n=8 Tax=Gammaproteobacteria RepID=Q0A8Q8_ALHEH Length = 1073 Score = 723 bits (1866), Expect = 0.0, Method: Compositional matrix adjust. Identities = 357/504 (70%), Positives = 411/504 (81%), Gaps = 4/504 (0%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EELRVALVDGQ+LYDLDIE+P EQKKANIYKG ITR+EPSLEAAFV Y Sbjct: 1 MKRMLINATQPEELRVALVDGQQLYDLDIETPAREQKKANIYKGTITRVEPSLEAAFVQY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHG-RPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 GAERHGFLP KEIA Y+ A G RP+I+D +REGQEV+VQ+DKEERG KGAALTT+ Sbjct: 61 GAERHGFLPFKEIAPSYYREGLKADGGRPSIRDAVREGQEVVVQVDKEERGTKGAALTTY 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ISLAG YLVLMPNNPRAGG+SRRIEG DR E++EAL L++PEGMGLIVRTAGVG++ E Sbjct: 121 ISLAGRYLVLMPNNPRAGGVSRRIEGSDRAEIREALRQLDVPEGMGLIVRTAGVGRTVEE 180 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 LQWDL + LK W AI+KAAE+R APFLI+QES+VI+RA RDYLR DIGEILID+P+V E Sbjct: 181 LQWDLDYLLKLWSAIQKAAEARSAPFLIYQESDVIIRALRDYLRSDIGEILIDDPQVFEK 240 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 A + + + P K+K Y +PLF+ YQIESQIESAFQR+VRLPSGG+IVID TEAL Sbjct: 241 AVEFVEQV-MPYNRQKLKYYDDRVPLFTRYQIESQIESAFQRDVRLPSGGAIVIDHTEAL 299 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +IDINSARAT+G DIEETA +TNLEAADEIARQLRLRDLGGLIVIDFIDM P R+QR V Sbjct: 300 ISIDINSARATKGSDIEETALHTNLEAADEIARQLRLRDLGGLIVIDFIDMGPNRNQREV 359 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 ENRLREAV+ DRAR+QI ISRFGLLEMSRQRL SLGES VC RC G GTVR ESL Sbjct: 360 ENRLREAVKADRARVQIGRISRFGLLEMSRQRLRSSLGESHQEVCARCGGQGTVRSVESL 419 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 +LSILR++EEEA+KE T V A +PV +A++LLNEKR +++ IE R V V++PN M Sbjct: 420 ALSILRIVEEEAMKEKTGTVLAQLPVDVATFLLNEKRPSISEIEDRHR-VAVVLIPNRTM 478 Query: 480 ETPHYHVLRVRKGEE-TPTLSYML 502 ETPHY V R+R +E T SY L Sbjct: 479 ETPHYDVQRLRSDDESTEDPSYRL 502 >UniRef50_Q2P196 Ribonuclease E n=28 Tax=Proteobacteria RepID=Q2P196_XANOM Length = 1240 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/670 (56%), Positives = 470/670 (70%), Gaps = 41/670 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EELRVA+VDGQ LYD+DIE P EQKK+NIYKG+ITR+EPSLEAAFVDY Sbjct: 1 MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEI+R+YF A H + I+++LREGQE++VQ+DKEERGNKGAALTTFI Sbjct: 61 GAERHGFLPLKEISRDYFQAGVD-HNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFI 119 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG Y+VLMPN+P AGG+SRRIEG+DR LKEAL L++P+ MG+I+RTAGVG+ AE L Sbjct: 120 SLAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEEL 179 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDL + L+ W+AI +AA S+PA FLI+QES +I+RA RDYLR D+GEIL+D P++ A Sbjct: 180 QWDLDYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADA 239 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++ + + P K+K YT +IPLF+ +QIESQIE A++R VRLPSGGSIV+D TEALT Sbjct: 240 QEFMKQV-MPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALT 298 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 A+D+NS+RAT+G DIEETAF TNLEAA+E+ARQLRLRDLGGL+VIDFIDM +HQR VE Sbjct: 299 AVDVNSSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVE 358 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N+L+ A++ DRAR+Q+ ISRFGL+EMSRQRL PSLGESS VCPRC G G +R ESLS Sbjct: 359 NKLQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLS 418 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSI+R+ EE A+KENT +V PV IA+YLLNEKRSA+ IE R + +IV ++Q+ Sbjct: 419 LSIIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESP-IIIVADEQLH 477 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPAL--ATFAMPDVP 538 TPHY V R+R+ E L E++ PS + RK P AL A +P P Sbjct: 478 TPHYEVTRLRENE-----------LGEDS-GKPSYQRGTPRKLPVH-ALTKAQLNIP-AP 523 Query: 539 PAPTPAEPAAPV-------VAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPT 591 PA T +P+ P AP AAPA P ++ G LK +F G E P Sbjct: 524 PAVTSIKPSQPAPVREETPAPVAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPLAPA 583 Query: 592 EQPAPKAEAKPERQQDRRKPRQNN--RRDRNERRDTRSERTEGSDNREENRRNRRQAQQQ 649 + P +PRQN+ R RNER + +R +G D R +Q Sbjct: 584 PESIP-------------RPRQNDAGRNHRNERGERGGQRRDGRDARNGGHSGNQQRGNG 630 Query: 650 TAETRESRQQ 659 +E R + Sbjct: 631 NGANKERRDE 640 >UniRef50_B5JUW5 Ribonuclease E n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUW5_9GAMM Length = 914 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/598 (59%), Positives = 447/598 (74%), Gaps = 32/598 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EELRVA+VDGQ+L +LDIE P EQKKANIYKG ITR+EPSLEAAFVD+ Sbjct: 1 MKRMLINATQPEELRVAIVDGQKLINLDIEVPSREQKKANIYKGVITRVEPSLEAAFVDF 60 Query: 61 GAERHGFLPLKEIAREYFPANY--SAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 GAERHGFLP KEI R Y P + + +GRPN+KD ++EGQE+I+Q++KEERGNKGAA+TT Sbjct: 61 GAERHGFLPFKEINRRYLPDDIETNDNGRPNVKDGIKEGQELIIQVEKEERGNKGAAITT 120 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAE 178 ISLAG YLV MP++PR+GG+SRRIEG++R +++EA+ + +P+G G+IVRTAGVG+++E Sbjct: 121 NISLAGRYLVAMPHSPRSGGVSRRIEGEERAQVREAMQDMTIPDGTGVIVRTAGVGRTSE 180 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 LQWD + + WEAI+KAAESR PFLI+QESNVI+RA RD+ R DIGEILID + + Sbjct: 181 ELQWDFDYLAQIWEAIEKAAESRQGPFLIYQESNVIIRALRDHYRDDIGEILIDEAGIHK 240 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 A ++ + D K+K Y +PLF+ YQIESQIESAFQREVRLPSGGSIV+D TEA Sbjct: 241 QANDFMSLAMQNDL-RKLKFYEDSVPLFNRYQIESQIESAFQREVRLPSGGSIVVDPTEA 299 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 LT+IDINSARAT+G +I+ETA NTNLEAADEIARQLRLRDLGGL+VIDFIDM +HQR Sbjct: 300 LTSIDINSARATKGSNIDETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMGSNKHQRE 359 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 VENRLR+AVR DRAR+Q + IS+FGLLEMSRQRL PSLGESS VCPRC G GT+R ES Sbjct: 360 VENRLRDAVRIDRARVQTNRISKFGLLEMSRQRLRPSLGESSKEVCPRCEGHGTIRSIES 419 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 L+L++LR++EEEALKENT V A +PV +A+++LNEKR V +E R + + +IVPN Sbjct: 420 LALAVLRIMEEEALKENTGRVIAQLPVDVATFMLNEKRQQVAELENR-NSIDLLIVPNKA 478 Query: 479 METPHYHVLRVRKGEETPT---LSYMLPKLHEEAMALPSEEEFAERKRP-EQPALATFAM 534 +ETPHY V RVR ++ SY + EE+ +P E K P E+PA+ T A Sbjct: 479 LETPHYVVERVRLSDKEANAKRTSYEQATVAEESY-VP---ELRSDKTPVEEPAVQTVA- 533 Query: 535 PDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTE 592 P AP P V PK A P GLL+R ++ LF G ++ +P++ Sbjct: 534 ---PVAP-------PQVEQKPKKKEAAPL-----GLLARL---IQWLF-GNQDKRPSK 572 >UniRef50_D0L1K6 Ribonuclease, Rne/Rng family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1K6_HALNC Length = 1016 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 366/662 (55%), Positives = 455/662 (68%), Gaps = 48/662 (7%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EE+RVALVDGQ LYD+DIE+PGHEQKK+N+YK ITRIEPSLEA FV+Y Sbjct: 1 MKRMLINATQAEEIRVALVDGQTLYDIDIETPGHEQKKSNVYKALITRIEPSLEAVFVNY 60 Query: 61 GAERHGFLPLKEIAREYFPAN-YSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 GA+RHGFLP KEIAR YF + GRP IK L+EGQE+IVQ++KEERGNKGAALTTF Sbjct: 61 GADRHGFLPFKEIARSYFDSEAVDDKGRPIIKSALKEGQEIIVQVEKEERGNKGAALTTF 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 +SLAG YLVLMPNNPRAGG+SRRIEGDDR E+K AL+ L +PEGMGLIVRTAGVG+ Sbjct: 121 VSLAGRYLVLMPNNPRAGGVSRRIEGDDRAEIKAALSELVVPEGMGLIVRTAGVGREPAE 180 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 LQ DL + + W+AI K +E+R APFLI+QES++I+RA RDY+R DIGE+LID P + + Sbjct: 181 LQSDLDYLQQVWDAIVKKSEARKAPFLIYQESDLIIRALRDYMRNDIGEVLIDEPNMHQQ 240 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 A + L PD KI+LY PLF+ YQIESQIESA++R V LPSGG +V D EAL Sbjct: 241 ALDFVN-LVSPDSVDKIRLYQDRTPLFTRYQIESQIESAYERNVTLPSGGELVFDVAEAL 299 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 TA+DINS R+T+G DIE+TAFNTNLEAADEIARQLRLRDLGGL+VIDFIDM +HQR V Sbjct: 300 TAVDINSGRSTKGQDIEDTAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMGQPKHQREV 359 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 ENRLR+A++ DRAR+Q+ ISRFGLLEMSRQRLS SL ES+ HVCPRC G G +R ESL Sbjct: 360 ENRLRDALKMDRARVQLGRISRFGLLEMSRQRLSASLEESAQHVCPRCMGQGHIRSVESL 419 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 +LSI+RL+ +E++K+ T V A VPV + +YLLNEKR ++ IE V +++PN + Sbjct: 420 ALSIMRLMIDESMKDQTGRVVAQVPVDVGTYLLNEKRLQLHEIEQNHQ-VEVLVIPNINL 478 Query: 480 ETPHYHVLRVRKGE--ETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 ETPH+ + RVR+ + E+P S L + A+A+P E + P +PA Sbjct: 479 ETPHFKIERVRRSDLAESPANSRAL--IEPLAVAVPDLE-----RAPRRPA--------- 522 Query: 538 PPAPTPAEPAAPV--VAPAPKAAPATPAAPAQP------------GLLSRFFGALKALFS 583 P EP PV AP PK + P +P GLL R G +F Sbjct: 523 ----APVEPIRPVPQSAPRPKVVASVPDVATEPAASTSAANIGALGLLKRVIG---QIFG 575 Query: 584 GGEETKPTEQPAPKAEAKPERQQDRRKP---RQNNRRDRNERRDTRSERTEGSDNREENR 640 G++ E AP+ P R+ +P + NR N ++ +E E+ R Sbjct: 576 AGDKRVEAEVAAPR---DPARKASSNRPPRAKDENRATPNRLPRAATQTSESEARLEDKR 632 Query: 641 RN 642 R+ Sbjct: 633 RD 634 >UniRef50_A4A8E4 Ribonuclease E n=5 Tax=unclassified Gammaproteobacteria RepID=A4A8E4_9GAMM Length = 1003 Score = 686 bits (1771), Expect = 0.0, Method: Compositional matrix adjust. Identities = 333/496 (67%), Positives = 410/496 (82%), Gaps = 7/496 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK+MLINAT EE+RVALVDGQ+LYDLDIE+ QKKANIY GKITR+EPSLEAAFVD+ Sbjct: 1 MKKMLINATHAEEMRVALVDGQKLYDLDIENRTRLQKKANIYVGKITRVEPSLEAAFVDF 60 Query: 61 GAERHGFLPLKEIAREYFPAN-YSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 GAERHGFL +KEIAREYF N G+ +I+DV++EG +IVQ+DKEERGNKGAALTTF Sbjct: 61 GAERHGFLSVKEIAREYFYRNPKDVDGKFSIRDVVKEGTRLIVQVDKEERGNKGAALTTF 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ISL G Y+VLMPNNPRAGGISRRIEGDDR EL+EAL++L++P+GMG+I+RTAGVG+SAE Sbjct: 121 ISLPGRYMVLMPNNPRAGGISRRIEGDDRAELREALSALDIPDGMGVIIRTAGVGRSAEE 180 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 LQWDL++ L+ WEA+ KA E +P L++QESNVI+RA RDYLR D+ ++LID+P + Sbjct: 181 LQWDLNYLLQLWEAVSKAGEENRSPVLLYQESNVIIRAVRDYLRDDVDQVLIDSPDAFKQ 240 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 A ++ + P + +IKLY IPLF+ +QIESQIE+AFQREVRLPSGGSIVID TEAL Sbjct: 241 AMDFVSMV-MPKYQQRIKLYEDNIPLFNRFQIESQIETAFQREVRLPSGGSIVIDPTEAL 299 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +IDINSARAT+G +IE TA TNLEAADE+ARQLRLRD+GGLIVIDFIDM ++QRAV Sbjct: 300 VSIDINSARATKGANIEATALQTNLEAADEVARQLRLRDMGGLIVIDFIDMLAAKNQRAV 359 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 ENR+R+A+ DRAR+Q+ ISRFGLLEMSRQRL PSLGE+S +CPRC+G G++RD +SL Sbjct: 360 ENRMRDALAIDRARVQVGRISRFGLLEMSRQRLRPSLGETSAIICPRCTGQGSIRDTKSL 419 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIE--TRQDGVRCVIVPND 477 SLSILRL+EEEA+K+ T EV AIVPV +A+YLLNEKR A++ +E TR VR +++PN Sbjct: 420 SLSILRLLEEEAIKDRTAEVRAIVPVDVAAYLLNEKRVALSEVESLTR---VRVLVIPNP 476 Query: 478 QMETPHYHVLRVRKGE 493 +ETPH+ V R+R E Sbjct: 477 NLETPHFEVTRLRDDE 492 >UniRef50_C8N8A8 Ribonuclease G and E n=19 Tax=Proteobacteria RepID=C8N8A8_9GAMM Length = 1302 Score = 679 bits (1753), Expect = 0.0, Method: Compositional matrix adjust. Identities = 372/668 (55%), Positives = 456/668 (68%), Gaps = 64/668 (9%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 MLINATQQEELRVALVDGQ+LYDLDIE+ QKKANIYKGKITRIEPSLEAAFVDYGA+ Sbjct: 1 MLINATQQEELRVALVDGQQLYDLDIETLYSAQKKANIYKGKITRIEPSLEAAFVDYGAQ 60 Query: 64 RHGFLPLKEIAREYFPANYSAH-GRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISL 122 RHGFLP KEI +EY + +AH G+ KD++ GQEV+VQIDKEERGNKGAALTT+ISL Sbjct: 61 RHGFLPFKEIGKEYLTGSTTAHEGQLAFKDMIEVGQEVLVQIDKEERGNKGAALTTYISL 120 Query: 123 AGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQW 182 AG +LVLMPNNPRAGG+SRRI+GDDR EL+E L L++PE MG+IVRTAGVG++ E LQW Sbjct: 121 AGRFLVLMPNNPRAGGVSRRIQGDDRKELRETLDMLDVPENMGIIVRTAGVGRAQEELQW 180 Query: 183 DLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQ 242 DL F L+ WEAI + LI+QESN+IVRA RDYLR DIG+ILID+ +V + A Sbjct: 181 DLDFLLQLWEAISEEYRKAQPQRLIYQESNIIVRALRDYLRPDIGQILIDDERVYQQASD 240 Query: 243 HIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAI 302 + L P+ +K+KLY IPLF+ YQIE QIESA+QR V+LPSGG +VID TEAL +I Sbjct: 241 FMT-LVMPNNLNKLKLYQDNIPLFTRYQIEGQIESAYQRNVQLPSGGELVIDYTEALVSI 299 Query: 303 DINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENR 362 DINS++AT+GGDIEETA+ TNLEAADEIARQ+RLRDLGGLIVIDFIDM+ R+++ VENR Sbjct: 300 DINSSKATKGGDIEETAYQTNLEAADEIARQMRLRDLGGLIVIDFIDMSVSRNRKDVENR 359 Query: 363 LREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLS 422 L EA + DRAR+QI ISRFGLLE+SRQRL PS+ ESSH VCPRC G G++R +S++LS Sbjct: 360 LYEATKIDRARVQIGRISRFGLLELSRQRLRPSMDESSHRVCPRCKGQGSIRGIQSMALS 419 Query: 423 ILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETP 482 +LRLIEEEA+KE T+ + +PV IA+YLLNEKR+ + IE R + V V+VPN + TP Sbjct: 420 LLRLIEEEAMKERTRRITGELPVSIATYLLNEKRAVIRQIEQR-NKVEVVLVPNADLHTP 478 Query: 483 HYHVLRVRKGE----ETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVP 538 Y++ R+R E PT SY L HE S EE +P + A+ V Sbjct: 479 DYYIERLRDDELDEDTAPTPSYRLRTRHE------SHEESDVVAKPGEAVTEQAAVQGVV 532 Query: 539 PAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALF-------SGGEET--- 588 P APAP+ AP Q L+ F + ALF S EET Sbjct: 533 PR-----------APAPQVAPTV-----QKSGLAALFSKVVALFKENRDPASAVEETAKT 576 Query: 589 -----------------------KPTEQPAPKAEAKPERQQD-RRKPRQN-NRRDRNERR 623 +P + P AEAK E Q+ R+ PR N N +N+R+ Sbjct: 577 TAGDKRRERTAPARNRRERNERQEPVQPPRKTAEAKAESVQEPRQAPRNNENGNGKNQRQ 636 Query: 624 DTRSERTE 631 + + R E Sbjct: 637 EEAARRYE 644 >UniRef50_B4RR31 Rne n=31 Tax=Neisseriaceae RepID=B4RR31_NEIG2 Length = 919 Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/611 (55%), Positives = 435/611 (71%), Gaps = 32/611 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRML NATQ EELRVA+VDGQ L DLDIE+ G EQ+K NIYKG ITRIEPSLEA FVDY Sbjct: 1 MKRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +RHGFLP KE++R YF Y GR I+DVL+EG EVIVQ++K+ERGNKGAALTTFI Sbjct: 61 GTDRHGFLPFKEVSRSYF-LGYEG-GRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFI 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPR GG+SRRIEG++R ELK A+A L++P GM +I RTAG+G+SAE L Sbjct: 119 SLAGRYLVLMPNNPRGGGVSRRIEGEERQELKAAMAQLDIPNGMSIIARTAGIGRSAEEL 178 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 +WDL++ + W+AI++A ++ P+L+ ES++++RA RDY R DIGEIL+DN +V + Sbjct: 179 EWDLNYLKQLWQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQV 238 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + ++ + P + ++KLY PLFS +QIE QIESAF R V LPSGG+IVID TEAL Sbjct: 239 AEFMSYV-MPGNAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +ID+NSARATRG DIE+TAF TN+EAA+E+ARQ+RLRDLGGL+VIDFIDM +HQR VE Sbjct: 298 SIDVNSARATRGADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N LR+A+++DRAR+Q+ +SRFGLLE+SRQRL P+LGESSH CPRC+GTG +R ES + Sbjct: 358 NVLRDALKKDRARVQMGKLSRFGLLELSRQRLKPALGESSHAACPRCAGTGVIRGIESTA 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 L +LR+++EEA+K+NT EV A VPV +A++LLNEKR+ + A+E R D V V++PN +E Sbjct: 418 LHVLRMVQEEAMKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLD-VNVVLIPNIHLE 476 Query: 481 TPHYHVLRVRKG--EETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVP 538 PHY + R+R EE SY + +A P E+E A+ E+ A Sbjct: 477 NPHYEINRIRTDDVEEDGEPSY-------KRVAEPEEDESAKPFGGEKAKAAR------- 522 Query: 539 PAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKA 598 P PA +PAP AAP + F LK +F GG ET Q P A Sbjct: 523 --PEPAVKGVRHTSPAPTAAP-----EKKTSWWDSFKAWLKRIF-GGSET----QAVPAA 570 Query: 599 EAKPERQQDRR 609 E +R R Sbjct: 571 ETSEKRSTANR 581 >UniRef50_Q2YA54 Ribonuclease E n=7 Tax=Betaproteobacteria RepID=Q2YA54_NITMU Length = 977 Score = 664 bits (1713), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/642 (54%), Positives = 450/642 (70%), Gaps = 38/642 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRML NATQ EELRVA+VDGQ+L DLDIES G EQ+K+NIYK ITR+EPSLEAAFV+Y Sbjct: 1 MKRMLFNATQPEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKAVITRLEPSLEAAFVEY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ERHGFLP KEI+R Y + GR ++D L EGQE+IVQ+DK+ERG KGAALTT+I Sbjct: 61 GGERHGFLPFKEISRSYLKESPDP-GRVRVQDALHEGQELIVQVDKDERGTKGAALTTYI 119 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPR GG+SRRIEG+DR EL++ ++ L +P+GM +I RTAG+G++ E L Sbjct: 120 SLAGRYLVLMPNNPRGGGVSRRIEGEDRAELRDVMSHLNIPQGMSIIARTAGIGRTEEEL 179 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDL++ L+ W AI+ A++ + FLI+QES++++RA RDY Q+IGEILID + E A Sbjct: 180 QWDLNYLLQLWRAIEDASKGQSGAFLIYQESSLVIRAIRDYFNQEIGEILIDTESIYEQA 239 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 Q + + P +++KLY ++PLFS +QIE QIE+A+ R+V LPSGG+IVID TEAL Sbjct: 240 CQFMGHV-MPGNVARVKLYRDDVPLFSRFQIEHQIETAYSRQVTLPSGGAIVIDHTEALV 298 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ++D+NSARATRG DIE+TA TNLEAADEIARQLRLRDLGGL+VIDFIDM R+QR VE Sbjct: 299 SVDVNSARATRGSDIEQTALATNLEAADEIARQLRLRDLGGLVVIDFIDMEVSRNQREVE 358 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NRL +A+R DRAR+Q+ ISRFGLLE+SRQRL PSLGESS+ CPRC GTG +R +S + Sbjct: 359 NRLHDALRYDRARVQMGKISRFGLLELSRQRLRPSLGESSYISCPRCHGTGHIRGTDSSA 418 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 L ILR+I+EEA+KENT +HA VPV +A+YLLNEKR+ ++AIE R V V++PN +E Sbjct: 419 LHILRIIQEEAMKENTAVLHAQVPVDVATYLLNEKRAEIHAIEARLK-VSVVLIPNIHLE 477 Query: 481 TPHYHVLRVRKGE----ETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPD 536 TP+Y + R+R + E T SY + + + + LPS + +P + A + Sbjct: 478 TPNYSITRLRHDDVKLGEVQT-SYQMVEKPAQDIPLPSS---GQEPKPMRQQAAVRGI-- 531 Query: 537 VPPAPTPAEPAAPVVAPAPKAAPATPAAPAQP-GLLSRFFGALKALFSGGEETKPTEQPA 595 TPA+P APV P+ P +P LL + FG K GG K Sbjct: 532 -----TPAQP-APVREQKPQHEP-------EPLSLLDKIFGWFK---QGGVGEKTVRHEP 575 Query: 596 PKAEAKPERQQDRRKPRQNNRRDRNER--------RDTRSER 629 P A A PE + R+ R+ R NE+ RD R+ER Sbjct: 576 PVAAAHPEERGQGRRDRREGRIGENEKAARAVQRPRDARAER 617 >UniRef50_C5AD76 Ribonuclease E n=21 Tax=Proteobacteria RepID=C5AD76_BURGB Length = 1125 Score = 663 bits (1711), Expect = 0.0, Method: Compositional matrix adjust. Identities = 376/740 (50%), Positives = 479/740 (64%), Gaps = 73/740 (9%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRML NATQQEELRVA+VDGQ+L D+DIE+ G EQ+K NIYKG ITRIEPSLEA FV+Y Sbjct: 1 MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +RHGFLP KE+AR+YF I+D LREGQE+IVQ++KEERGNKGAALTTFI Sbjct: 61 GEDRHGFLPFKEVARQYFRDGVDMRS-ARIQDALREGQELIVQVEKEERGNKGAALTTFI 119 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPR GG+SRRIEGD+R EL+E +A LE+PEGM +I RTAG+G+SAE L Sbjct: 120 SLAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLEIPEGMSMIARTAGIGRSAEEL 179 Query: 181 QWDLSFRLKHWEAIKKAAESRPA--PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 QWDL++ L+ W AI+ A++S A P LI+ ES++++RA RDY + DIGEILID ++ + Sbjct: 180 QWDLNYLLQLWHAIEAASKSGHAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHD 239 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 AR + + PD K+K Y ++PLFS +QIE QIE+A+ R V LPSGG+IVID TEA Sbjct: 240 QARAFMDIV-MPDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEA 298 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 L AID+NSARAT+G DIEETA TNLEAADE+ARQLRLRDLGGLIVIDFIDM + QR Sbjct: 299 LVAIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQRE 358 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 VE RL++A++ DRAR+Q+ ISRFGL+E+SRQRL P+L E SH CPRC+GTG +RD ES Sbjct: 359 VEQRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTES 418 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 +L +LR+I+EEA+KENT +H VPV + ++LLNEKR +N IE+R V V++PN Sbjct: 419 SALQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFK-VGIVLIPNKH 477 Query: 479 METPHYHVLRVRKGE---ETPTLSYMLPKLHEEAMALPSEEEFAERK---RPEQPALATF 532 ++TPHY + R+R + + P S+ + + E A L SE +++R +P+Q A Sbjct: 478 LDTPHYKLERLRHDDARLDDPRASWKMAE--EAARELESETGYSKRTGDVKPKQEAAVKG 535 Query: 533 AMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGE------ 586 PD P P P AP AAP A FFG +K+LF G Sbjct: 536 ITPD---HPAPGAPQREAAPVAPAAAPVAAAPVPVAASGGGFFGWIKSLFGGQPPAPAPA 592 Query: 587 ---------ETKPTEQPAPKAEAKPERQQDR-----------------------RKPRQN 614 + +P+ + K+E + ER DR R P+ Sbjct: 593 PAPVQEVETQARPSRERGEKSE-RGERGGDRNRNPNRRNGQPAGARDTQAAAGSRVPQAR 651 Query: 615 NRRDRNER---RDTRSERTEGSDNRE--ENRRNRR-------------QAQQQTAETRES 656 R+ E R+ R E EG NRE E R R +A ++ E RE Sbjct: 652 GEREVKEGREPRENRGEAREGRGNREPREAREGREAREPREVREPREPRAAREPREAREP 711 Query: 657 RQQAEVTEKARTADEQQAPR 676 R+ E E A TAD +APR Sbjct: 712 REGREPRESAVTADGAEAPR 731 >UniRef50_A9ADG1 Ribonuclease, Rne/Rng family n=89 Tax=Betaproteobacteria RepID=A9ADG1_BURM1 Length = 1111 Score = 657 bits (1696), Expect = 0.0, Method: Compositional matrix adjust. Identities = 326/552 (59%), Positives = 418/552 (75%), Gaps = 14/552 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRML NATQQEELRVA+VDGQ+L D+DIE+ G EQ+K NIYKG +TRIEPSLEA FV+Y Sbjct: 58 MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY 117 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +RHGFLP KE+AR+YF I+D LREGQE+IVQ++KEERGNKGAALTTFI Sbjct: 118 GEDRHGFLPFKEVARQYFKDGVDMRS-ARIQDALREGQELIVQVEKEERGNKGAALTTFI 176 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPR GG+SRRIEGD+R EL+E +A L++P+GM +I RTAG+G+SAE L Sbjct: 177 SLAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEEL 236 Query: 181 QWDLSFRLKHWEAIKKAAES-RPA-PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 QWDL++ L+ W AI+ A++S P P LI+ ES++++RA RDY + DIGEILID ++ + Sbjct: 237 QWDLNYLLQLWRAIEAASQSGNPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYD 296 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 AR + + PD SK+K Y ++PLFS +QIE QIE+A+ R V LPSGG+IVID TEA Sbjct: 297 QARAFMDIV-MPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEA 355 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 L AID+NSARAT+G DIEETA TNLEAADE+ARQLRLRDLGGLIVIDFIDM + QR Sbjct: 356 LVAIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQRE 415 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 VE RL++A++ DRAR+Q+ ISRFGL+E+SRQRL P+L E SH CPRC+GTG +RD ES Sbjct: 416 VEQRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTES 475 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 +L +LR+I+EEA+KENT +H VPV + ++LLNEKR +N IE+R V V++PN Sbjct: 476 SALQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRFK-VGIVLIPNKH 534 Query: 479 METPHYHVLRVRKGE---ETPTLSYMLPKLHEEAMALPSEEEFAERK---RPEQPALATF 532 ++TPHY + R+R + + P S+ + + E A L SE +++R +P+Q A Sbjct: 535 LDTPHYKLERLRHDDARLDDPRASWKMAE--EAARELESETGYSKRAADVKPKQEAAVKG 592 Query: 533 AMPDVPPAPTPA 544 P+ PAP+PA Sbjct: 593 ITPE-RPAPSPA 603 >UniRef50_B5EL09 Ribonuclease, Rne/Rng family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EL09_ACIF5 Length = 782 Score = 639 bits (1649), Expect = 0.0, Method: Compositional matrix adjust. Identities = 338/620 (54%), Positives = 421/620 (67%), Gaps = 54/620 (8%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINAT EELRVALVDGQ+L DLDIE EQKK+NIYKG+ITR+EPSLEAAFVDY Sbjct: 1 MKRMLINATHAEELRVALVDGQKLLDLDIERAYREQKKSNIYKGRITRVEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEIAREYF GR I+D++REGQE+IVQ+DKEER +KGAALTTF+ Sbjct: 61 GAERHGFLPLKEIAREYF--QQQEQGRKRIQDLVREGQEIIVQVDKEERSSKGAALTTFV 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPRAGG+SRRIEG+DRT++++ L L++PE MG+I RTAG+G+ EAL Sbjct: 119 SLAGRYLVLMPNNPRAGGVSRRIEGEDRTQIRQHLQLLDIPENMGVIARTAGIGQELEAL 178 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q DL + + W+AI A R APFLI+QE NV+VRA RD+ +DIGE+LID A Sbjct: 179 QRDLEYLKQIWQAIVDTAAPRAAPFLIYQEGNVVVRALRDHFSEDIGEVLIDEEGAYNAA 238 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 Q + ++ P ++K Y ++PLFS YQIE QIESAF REVRL SGG+IVID TEAL Sbjct: 239 VQFMGSM-MPKMVHRLKYYDNDVPLFSRYQIEQQIESAFSREVRLESGGAIVIDHTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 A+D+NS RAT+G DI ETAF TNLEAA+EIARQ+RLRDLGGLIV+DFIDM +HQR VE Sbjct: 298 AVDVNSGRATKGQDIAETAFQTNLEAAEEIARQIRLRDLGGLIVVDFIDMESPKHQREVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N+L+EA++ DRAR+Q+ ISRFGL+EMSRQRL SL E+S CPRC+GTG +R E+ S Sbjct: 358 NKLKEALKLDRARVQLGRISRFGLMEMSRQRLGASLEEASSEPCPRCNGTGQIRGCEATS 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 + +LRL+ EE +K EV VPV +A YLLNEKR + +E + D R +++P +M Sbjct: 418 MHVLRLLYEECMKTGAAEVECQVPVDVAVYLLNEKRRQILELEAKTD-TRILVIPTPEMV 476 Query: 481 TPHYHVLRVR-KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV-- 537 TPHY + R R +G T P E ALP+ RP +P + A+ + Sbjct: 477 TPHYQIQRTRVEGGSGRT----APAPGGEGNALPA--------RPSRPTNESAALSPLTA 524 Query: 538 ------------PPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALF--- 582 PPAP+ +PKA P + G+L+R AL + + Sbjct: 525 PPPPEVLPPLRTPPAPS-----------SPKAKVPAKVVPPEEGILARLVRALVSRYVPV 573 Query: 583 ---------SGGEETKPTEQ 593 SG E + TEQ Sbjct: 574 DAATFLAETSGAEMSASTEQ 593 >UniRef50_Q6FEY0 Ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6FEY0_ACIAD Length = 1138 Score = 606 bits (1563), Expect = e-171, Method: Compositional matrix adjust. Identities = 296/486 (60%), Positives = 371/486 (76%), Gaps = 4/486 (0%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINAT EE+RVAL+ G RLYD D+E+ EQKK+NIYKG +TR+EPSLEA FV+Y Sbjct: 1 MKRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GA+R GFL ++EIA Y A+ NI++++ EG E++VQ++KEERGNKGAAL+TFI Sbjct: 61 GAQRQGFLSMREIASSYLHAD--PRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFI 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNP+ GGISR+I G R ELKE LASL +P GM +IVRTAG+G+S E L Sbjct: 119 SLAGRYLVLMPNNPKGGGISRQISGSVREELKEMLASLNVPRGMSVIVRTAGIGRSQEEL 178 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q DL L W I+ + S P+P L+HQE+ V+ RA RDYLR D+ EILID+ + A Sbjct: 179 QLDLQHLLDLWSQIQSTSNSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEA 238 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + A+ P K+K YT PLF+H+ IESQI++A++REV+LPSGGSIVID TEAL Sbjct: 239 YNFVKAV-MPRQLDKLKTYTLNEPLFAHFAIESQIQTAYEREVKLPSGGSIVIDQTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSA++TRG D+EETA NTNLEAA+EIARQLRLRD+GGL+VIDFIDMT R+QR VE Sbjct: 298 SIDINSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 +LREA + DRARIQ +SRFGL+EMSRQRL PSL E++ +VCPRC GTG VRD SLS Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLS 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSI+R +EE AL+E EV VPV IA++LLNEKR ++ +E + GVR ++P+ +E Sbjct: 418 LSIMRKVEEIALRERHGEVQVEVPVEIAAFLLNEKRHSLVYLE-QTSGVRVTVLPHPHLE 476 Query: 481 TPHYHV 486 TPHY + Sbjct: 477 TPHYEI 482 >UniRef50_C8PW15 Ribonuclease E n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PW15_9GAMM Length = 1266 Score = 603 bits (1556), Expect = e-171, Method: Compositional matrix adjust. Identities = 288/492 (58%), Positives = 370/492 (75%), Gaps = 4/492 (0%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKR+LINAT EE+RVAL +G LYD D+E+ EQKKANIYKG +TR+EPSLEA FV+Y Sbjct: 1 MKRILINATHAEEIRVALCNGNHLYDFDLENRTREQKKANIYKGHVTRVEPSLEAVFVEY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G++R GFLP++EIA EY + NIK +++EG E+IVQ++KEERGNKGAAL+T I Sbjct: 61 GSQRQGFLPIREIAPEYLAGD--PRSTTNIKQLIKEGDELIVQVEKEERGNKGAALSTLI 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNN R GGISR+I G R E+K+AL+ L LP+GM +I+RTAG+GK+ + L Sbjct: 119 SLAGRYLVLMPNNARGGGISRQISGKLRDEMKQALSELRLPKGMSVIIRTAGIGKTTDEL 178 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q DL L W+ I++ ++ P+P L+HQE+ V+ RA RDYLR DI EI +DN A Sbjct: 179 QQDLDHLLNIWKGIQQQSQKFPSPRLLHQEAGVVTRAVRDYLRDDITEIWVDNEYAYNEA 238 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 I A+ P ++K++ YT P+F+ + IE QIE+A+QREVRLPSGGSIVID TEAL Sbjct: 239 ANFIEAV-MPQQANKLRKYTDYEPMFARFGIEKQIETAYQREVRLPSGGSIVIDQTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINS++AT+G D+ ETAFNTNLEAADEIARQLRLRD+GGLIVIDFIDM HQ+ VE Sbjct: 298 SIDINSSKATKGADVSETAFNTNLEAADEIARQLRLRDMGGLIVIDFIDMATDDHQKQVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NRL+EA + DRARIQ + ISRFGLLEMSRQRL PSL E++ ++CPRC GTG +RD SL+ Sbjct: 358 NRLKEATKNDRARIQFAEISRFGLLEMSRQRLRPSLEEATGYLCPRCHGTGMIRDLRSLA 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSI+R IE+ AL+E EV A VP IA++LLNEKR + +E ++ G R I+P+ +E Sbjct: 418 LSIMRQIEQRALQERHGEVQAEVPTDIAAFLLNEKRETLVCLE-QESGTRITILPHAHLE 476 Query: 481 TPHYHVLRVRKG 492 +P +++ G Sbjct: 477 SPEFNITYNSDG 488 >UniRef50_A5WCP3 RNAse E n=3 Tax=Proteobacteria RepID=A5WCP3_PSYWF Length = 1368 Score = 603 bits (1555), Expect = e-170, Method: Compositional matrix adjust. Identities = 308/576 (53%), Positives = 396/576 (68%), Gaps = 19/576 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKR+LINAT EE+RVAL G LYD D+E+ EQKKANIYKG +TR+EPSLEA FV+Y Sbjct: 1 MKRILINATHNEEVRVALCKGNHLYDFDLENRTREQKKANIYKGHVTRVEPSLEAVFVEY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G++R GFLP++EIA EY N NI+ +++EG E+IVQ++KEERGNKGAAL+T++ Sbjct: 61 GSKRQGFLPVREIASEYLSGNPR---EENIRKLIKEGDELIVQVEKEERGNKGAALSTYV 117 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNP+ GGISR+I G R ++K L +L+LP+GM +IVRTAG+GK+ E L Sbjct: 118 SLAGRYLVLMPNNPKGGGISRQISGKLREDMKRMLGNLDLPKGMSVIVRTAGIGKTQEDL 177 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q DL+ L W AI+ + +P L+HQE+ V+ RA RDYLR DI EI IDN + A Sbjct: 178 QHDLNHLLNIWNAIQDQNKKYASPRLVHQEAGVVTRAVRDYLRDDITEIWIDNEEAFIEA 237 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 I A+ P K++ YT P+FS + +E QIE+A+QREVRLPSGGSIVID TEAL Sbjct: 238 ETFIKAV-MPTQIDKLRKYTDFEPMFSSFNVERQIETAYQREVRLPSGGSIVIDQTEALV 296 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSA++T+G D+ ETA++TNLEAADEIARQLRLRD+GGLIVIDFIDM +HQ+ VE Sbjct: 297 SIDINSAKSTKGADVAETAYHTNLEAADEIARQLRLRDMGGLIVIDFIDMNDSKHQKEVE 356 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 RL EA + DRAR+Q ISRFGL+EMSRQRL PSL ES+ ++CPRC G G +RD SLS Sbjct: 357 KRLVEATKYDRARVQFGEISRFGLMEMSRQRLRPSLEESTGYICPRCHGNGMIRDLRSLS 416 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSI+R IE+ ALKE EV A VP IA++LLNEKR ++ +E + G R I+P+ +E Sbjct: 417 LSIMRQIEQTALKERHGEVQAEVPTDIAAFLLNEKRESLVYLE-QDSGTRITILPHAHLE 475 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEF--AERKRPEQPALATFAMPDVP 538 +P++++ G + + +E L E ++ AE +RPEQ P Sbjct: 476 SPNFNIHFNHHGFAPASYERVTDTQQQETSGLGYEVDWQTAESERPEQ-------QPVRQ 528 Query: 539 PAPTPAEPAAPVVAPAPKAAPATPAA-----PAQPG 569 P T + +A PA A ATP A P QP Sbjct: 529 PRKTAPQASADTSKPAEAAKAATPVANTAAKPQQPA 564 >UniRef50_C0VHW5 Ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VHW5_9GAMM Length = 1143 Score = 603 bits (1554), Expect = e-170, Method: Compositional matrix adjust. Identities = 295/486 (60%), Positives = 373/486 (76%), Gaps = 4/486 (0%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINAT EE+RVAL+ G RLYD D+E+ EQKK+NIYKG +TR+EPSLEA FV+Y Sbjct: 21 MKRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY 80 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GA+R GFL ++EIA YF A+ NI++++ EG E++VQ++KEERGNKGAAL+TFI Sbjct: 81 GAQRQGFLSMREIANSYFKAD--PRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFI 138 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNP+ GGISR+I G R ELKE LA+L +P GM +IVRTAG+G++ E L Sbjct: 139 SLAGRYLVLMPNNPKGGGISRQISGSVREELKEILATLNIPRGMSVIVRTAGIGRTQEEL 198 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q DL L W I+ +A + P+P L+HQE+ V+ RA RDYLR D+GEILID+ + A Sbjct: 199 QLDLQHLLDLWAQIQSSASTGPSPMLVHQEAGVVTRAIRDYLRDDVGEILIDSEQAYNEA 258 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + A+ P K+K YT PLF+H+ IESQI++A++REV+LPSGGSIVID TEAL Sbjct: 259 YNFVKAV-MPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALV 317 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSA++TRG D+EETA NTNLEAA+EIARQLRLRD+GGL+VIDFIDMT R+QR VE Sbjct: 318 SIDINSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVE 377 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 +LREA + DRARIQ +SRFGL+EMSRQRL PSL E++ +VCPRC GTG VRD SLS Sbjct: 378 AKLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLS 437 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSI+R +EE AL+E EV VPV IA++LLNEKR ++ +E + VR ++P+ +E Sbjct: 438 LSIMRKVEEIALRERQGEVQVEVPVEIAAFLLNEKRHSLVYLE-QTSNVRVTVLPHPHLE 496 Query: 481 TPHYHV 486 TPHY + Sbjct: 497 TPHYQI 502 >UniRef50_B0VED2 Ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation n=16 Tax=Acinetobacter RepID=B0VED2_ACIBY Length = 1110 Score = 601 bits (1550), Expect = e-170, Method: Compositional matrix adjust. Identities = 297/486 (61%), Positives = 371/486 (76%), Gaps = 4/486 (0%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINAT EE+RVAL+ G RLYD D+E+ EQKK+NIYKG +TR+EPSLEA FV+Y Sbjct: 1 MKRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GA R GFL ++EIA YF A+ NI++++ EG E++VQ++KEERGNKGAAL+TFI Sbjct: 61 GAGRQGFLSMREIANSYFQAD--PRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFI 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNP+ GGISR+I G R ELKE LASL +P GM +IVRTAG+G++ E L Sbjct: 119 SLAGRYLVLMPNNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEEL 178 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q DL L W I+ A S P+P L+HQE+ V+ RA RDYLR D+ EILID+ + A Sbjct: 179 QLDLQHLLDLWAQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEA 238 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + A+ P K+K YT PLF+H+ IESQI++A++REV+LPSGGSIVID TEAL Sbjct: 239 YNFVKAV-MPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSA++TRG D+EETA NTNLEAA+EIARQLRLRD+GGL+VIDFIDMT R+QR VE Sbjct: 298 SIDINSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 +LREA + DRARIQ +SRFGL+EMSRQRL PSL E++ +VCPRC GTG VRD SLS Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLS 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSI+R +EE AL+E EV VPV IA++LLNEKR ++ +E + GVR ++P+ +E Sbjct: 418 LSIMRKVEEIALRERHGEVQVEVPVEIAAFLLNEKRHSLVYLE-QTSGVRVTVLPHPHLE 476 Query: 481 TPHYHV 486 TPHY + Sbjct: 477 TPHYEI 482 >UniRef50_B6BTS7 Ribonuclease E n=2 Tax=Betaproteobacteria RepID=B6BTS7_9PROT Length = 738 Score = 584 bits (1505), Expect = e-165, Method: Compositional matrix adjust. Identities = 279/501 (55%), Positives = 374/501 (74%), Gaps = 6/501 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRML NATQ EE+RVA+++ + DLD E EQ+K+NIYKG ITR+EPSLEAAFV+Y Sbjct: 1 MKRMLFNATQSEEIRVAIINDSTIEDLDYERSSREQRKSNIYKGTITRVEPSLEAAFVNY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +RHGFLP KEI++E++ + S +I DV+ EGQEVIVQ+ KEERGNKGAALTTF+ Sbjct: 61 GVDRHGFLPFKEISKEFY-SKKSRKKNLSIADVINEGQEVIVQVSKEERGNKGAALTTFL 119 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG Y+VLMPN+ +GGISRRIEGD+R+ KE L+ L++ +GM +I RTAG+G S E + Sbjct: 120 SLAGRYIVLMPNSSESGGISRRIEGDERSNFKEVLSQLKVKKGMSVIGRTAGIGASVEEI 179 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDL + + EAI+ A+ + APFLI+QESN+++RA RDY DI EILIDN + + A Sbjct: 180 QWDLDYLTQLSEAIQGASGQQEAPFLIYQESNLVIRAIRDYFNTDIEEILIDNQDIYDQA 239 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 Q + + PD++ +I+LY LFS + IE+QIESAF REV+LPSGG IVID TEAL Sbjct: 240 SQFMNHV-MPDYADRIQLYEESTALFSKFNIENQIESAFLREVQLPSGGVIVIDHTEALV 298 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +ID+NS+R+T+G DIE TAFNTNLEAA E+A+QLRLRD+GGLIV+DFIDM +HQR VE Sbjct: 299 SIDVNSSRSTKGRDIENTAFNTNLEAAREVAKQLRLRDIGGLIVVDFIDMENPKHQREVE 358 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 LR+A++ D+ARIQ ISRFGL+E+SRQRL PS+GE+S+ CP+C+GTG +RD +S + Sbjct: 359 ECLRDALKHDKARIQTGRISRFGLMELSRQRLRPSIGETSNGECPKCNGTGRIRDFQSSA 418 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDG-VRCVIVPNDQM 479 L I+R+I+E++ K+ Q++ VPV +A++LLNEKR + I+T +G + I+ N Sbjct: 419 LHIIRMIQEQSNKKQGQKISVQVPVDVATFLLNEKREII--IQTESEGNNKIFIIANKYF 476 Query: 480 ETPHYHVLRVRKGEETPTLSY 500 + P + + G + LSY Sbjct: 477 DVPQFKITSSDLGNK-KGLSY 496 >UniRef50_A8PMW2 Ribonuclease E (RNase E) n=1 Tax=Rickettsiella grylli RepID=A8PMW2_9COXI Length = 778 Score = 578 bits (1490), Expect = e-163, Method: Compositional matrix adjust. Identities = 297/519 (57%), Positives = 373/519 (71%), Gaps = 14/519 (2%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 R+LINA Q E+RVAL++ +L DLD+E G EQKK+NIYKGKI+RIE SLEAAF+ YGA Sbjct: 7 RILINANQPGEIRVALLEANKLSDLDMEYTGQEQKKSNIYKGKISRIEQSLEAAFISYGA 66 Query: 63 ERHGFLPLKEIAREYFPA-NYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFIS 121 ERHGFLP KEIA Y NY IK L+ GQE++VQI+KEERG+KGAALTT+I+ Sbjct: 67 ERHGFLPFKEIAPSYLKGKNYDLQS---IKHSLKVGQELMVQIEKEERGDKGAALTTYIT 123 Query: 122 LAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASL----ELPEGMGLIVRTAGVGKSA 177 L GSYLVLMPNNP AGGISRRIEGD+R E+++ + L EL + MGLI+RTAGVG+ Sbjct: 124 LPGSYLVLMPNNPGAGGISRRIEGDERREMQDLMHDLIEQTELSKNMGLILRTAGVGREF 183 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 L+ DL+ ++ W AI+KA RPAPFLI QE ++I R+ RDYLR+DI EI++D+ K+ Sbjct: 184 SELKNDLNLLIQQWNAIQKAYHERPAPFLIFQEGDLITRSVRDYLRRDIDEIIVDDKKIH 243 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 E +Q+I + RPDF S+I LY IPLF ++ IE +ESAF+R++ LPSG +IVID TE Sbjct: 244 EKIKQYIEQI-RPDFVSRISLYQNHIPLFMYFDIEEAVESAFKRKIELPSGATIVIDRTE 302 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 AL +IDINS R+T+ DIEETA TNLEAA EIA QLR+RDLGGLIVIDFIDM +QR Sbjct: 303 ALVSIDINSGRSTKNEDIEETAVATNLEAAKEIAHQLRVRDLGGLIVIDFIDMNSEENQR 362 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 VEN R AV++DRARIQI IS FGLLEMSRQRL SLG+++ +C RC+G GTVR E Sbjct: 363 KVENCFRLAVKKDRARIQIGRISTFGLLEMSRQRLRHSLGKANETLCSRCNGQGTVRTIE 422 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 S +L +LR IE+E LK++TQ + +PV IA+YL NEKR A+ IE Q V +++PN Sbjct: 423 SFALFLLRSIEKETLKKSTQHIRVELPVDIATYLFNEKRLALQHIE-HQYNVNLLLIPNP 481 Query: 478 QMETPHYHVLRVRKGEETPT---LSY-MLPKLHEEAMAL 512 ++P Y + K T SY ML K H E+ L Sbjct: 482 YWQSPQYKITSFSKTNNLKTNDAASYQMLDKSHLESSLL 520 >UniRef50_B3T2A0 Putative S1 RNA-binding domain protein n=2 Tax=prokaryotic environmental samples RepID=B3T2A0_9ZZZZ Length = 776 Score = 569 bits (1467), Expect = e-160, Method: Compositional matrix adjust. Identities = 276/508 (54%), Positives = 371/508 (73%), Gaps = 6/508 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ+EELRVA+VDGQ+LYDLDIE EQKK NIYK KI+RIEPSL+A FVD+ Sbjct: 22 MKRMLINATQEEELRVAMVDGQKLYDLDIEIKSREQKKNNIYKAKISRIEPSLDAIFVDF 81 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G+ R+GFLP +E++REY+ + + +IK +L EGQ+++VQ+ KEERG KGAALTTFI Sbjct: 82 GSARNGFLPFREVSREYYLSEPIPGEKLDIKKLLEEGQDIVVQVSKEERGTKGAALTTFI 141 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG ++VLMPN +AGG+SR+I G DR ++ ++L++L +P+ GLI+RTAG+G+S L Sbjct: 142 SLAGRFIVLMPNKAKAGGVSRKIMGQDREQILDSLSNLGVPKEAGLIIRTAGLGRSDIEL 201 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 +WDL L W +IKK A + AP LI +E N+IVRA RD+L +I EI++D+ + A Sbjct: 202 EWDLKHLLGIWNSIKKMAVNVEAPALIFKEDNLIVRAMRDHLNDEISEIIVDDENTFKDA 261 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++++ + P+ K+ Y PLF+ +QIE QIESA+ +V LPSGGS+VID TEAL Sbjct: 262 KKYLKQV-TPNNLKKLLYYKETTPLFTKFQIEHQIESAYSNKVILPSGGSVVIDYTEALV 320 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINS ++T+ IE TA TNLEA DEI RQ RLRDLGGL+VIDFIDM R+Q+ VE Sbjct: 321 SIDINSGKSTKQSGIESTALKTNLEAVDEITRQCRLRDLGGLLVIDFIDMRQHRNQKQVE 380 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N L+ AV+ DRA+I + HIS+FGLLEMSRQRL PSLG+S++ +C CSG G +R ESL+ Sbjct: 381 NALKNAVKSDRAKISLGHISKFGLLEMSRQRLRPSLGDSAYRICENCSGMGRIRSTESLA 440 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 L++LRL+EEEA KENT V A +P A+YLLNEKR + IE R+ V +++ + ++ Sbjct: 441 LAVLRLVEEEARKENTASVIADIPSDAATYLLNEKRQWIKDIEQRE-SVHIILIADPELS 499 Query: 481 TPHYHVLRVRKGE----ETPTLSYMLPK 504 + ++ + R+RK E E SY L K Sbjct: 500 SVNFSIKRLRKDEANLAEYKQASYKLAK 527 >UniRef50_B0TYI3 Ribonuclease E n=18 Tax=Francisella RepID=B0TYI3_FRAP2 Length = 890 Score = 554 bits (1428), Expect = e-156, Method: Compositional matrix adjust. Identities = 292/671 (43%), Positives = 427/671 (63%), Gaps = 34/671 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK++LIN+ EE R+A +D +L DLDIE+ EQKKANIYKG I+RIEPSL A FV+Y Sbjct: 1 MKKILINSKSSEETRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +++GFLP KE++ Y NI +L EGQE+IVQIDKEERG+KGAALTTFI Sbjct: 61 GEDKNGFLPFKEVSEYYLK---DVPNGENIAHLLSEGQELIVQIDKEERGDKGAALTTFI 117 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LAGSY+VL+PNNP GGISRR+EG+DR +LK+ L L +P+ M +I RTA V S E L Sbjct: 118 TLAGSYMVLLPNNPDGGGISRRVEGEDREKLKKYLKDLNIPKNMSVIARTACVECSFEEL 177 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 + D ++ W++I KA P L+H+ES++IVR RD+L++D+ EI++D+ + E Sbjct: 178 KHDFDTLVELWDSIFKAYHKIKKPDLLHKESDIIVRTVRDHLKEDVKEIIVDSKECYEDV 237 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++ + L + +K+KLY E+P+F+ + I+ QIE+A++RE+RLPSGGSIVID+TEAL Sbjct: 238 KRQLGLLRQSFDINKVKLYNEELPIFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AID+NS+RA + D+E TAF TNLEAA+E+ARQLR+RDLGGL+++DFIDM+ +++ VE Sbjct: 298 AIDVNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 +L EA++QD+ARIQ+S IS+ GL+E+SRQRLS S+ ES CPRC G G ++ ++ + Sbjct: 358 EKLMEALQQDKARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCDGHGFIKTTQATA 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 L+ILR I EA+KE+T E+ VPV IA+Y+LNEKR ++ IE R V+ +++PN ME Sbjct: 418 LTILRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIE-RISEVKVMLIPNFNME 476 Query: 481 TPHYHVLRV--RKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPD-- 536 +P + + R+ + T S ++ ++ + +P A +K+ L+ D Sbjct: 477 SPKFQMQRIWGTSYKSNRTSSDLIEDVYN--VEIPK----AGKKKVAAVELSKPISEDQS 530 Query: 537 VPPAPTPAEPAAPVVAPAPKAAPATPAA--PAQPGLLSRFFGALKALFSGGEETKPTEQP 594 V P + T P + G S+ L +G E E Sbjct: 531 VSPKEDNKLENKNIETTVQNNTNKTSEKQEPKKKGFFSKLLDKL----TGSNEVIAVENK 586 Query: 595 APKAE--------AKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQA 646 P+ + KP++ QD R P ++D N+R D ++ + SDN+ N+ + Q Sbjct: 587 KPQNKQYNNKDKAQKPQKSQDNR-P----QKDINQRDDRKANNNDRSDNKNNNKGQKPQV 641 Query: 647 QQQTAETRESR 657 Q++ + R+ R Sbjct: 642 -QKSQDNRQER 651 >UniRef50_Q89AH3 Putative truncated ribonuclease E n=22 Tax=Bacteria RepID=RNE_BUCBP Length = 410 Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust. Identities = 253/402 (62%), Positives = 328/402 (81%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M+RMLINA + ++LR+AL+DGQ+LYDL++E+ +Q+K+NIYKGKI RIEPSLEAAFVDY Sbjct: 1 MRRMLINAIEIKKLRIALIDGQQLYDLNVENIDKKQRKSNIYKGKIVRIEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +++GFLPLKEI+R YFP N S + +IK++L+EGQE IVQIDKEERG KGA LTTFI Sbjct: 61 GEKKNGFLPLKEISRNYFPNNCSNYRHLHIKNILKEGQECIVQIDKEERGTKGALLTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG+YLVLMPN P GISR+IEG DR LK+ ++ L +PE MG+I+RT+GVG+S E L Sbjct: 121 SLAGNYLVLMPNCPHLEGISRKIEGIDRFHLKKIISMLMVPENMGIIIRTSGVGRSIETL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q DL+FR+K+W IKK+AE AP LIH+ESN+++R RDYL++DI EI++DNP++LELA Sbjct: 181 QLDLNFRVKNWYTIKKSAEINTAPCLIHKESNIVIRTLRDYLKKDIQEIIVDNPEILELA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 R ++ + F KIKLYTG PLFS+Y+IESQI + +R V+LPSGGSI+ID TEALT Sbjct: 241 RDYMFNMNCSYFEKKIKLYTGSDPLFSYYKIESQINALLRRIVKLPSGGSIIIDYTEALT 300 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AIDINS+++T+G +IEETAFNTN EA EIARQLRLRDLGGLIVIDFIDM+ ++HQ+ +E Sbjct: 301 AIDINSSQSTKGVNIEETAFNTNYEAVREIARQLRLRDLGGLIVIDFIDMSVLKHQKMIE 360 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHH 402 L + +++DRAR+Q+ IS+FGLLEMSRQ L L + +H+ Sbjct: 361 LHLHQVLQKDRARVQVGSISQFGLLEMSRQCLGSPLKKINHN 402 >UniRef50_A1AW88 Ribonuclease, Rne/Rng family n=3 Tax=Gammaproteobacteria RepID=A1AW88_RUTMC Length = 584 Score = 483 bits (1242), Expect = e-134, Method: Compositional matrix adjust. Identities = 246/504 (48%), Positives = 342/504 (67%), Gaps = 8/504 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M +LINA EE+RV +V ++L L+IE+ +++ K NIY GKI+R+E SLEAAFVDY Sbjct: 1 MNHILINAIYSEEIRVGIVKNKKLTGLNIETSLNKKTKGNIYHGKISRVEQSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHG-RPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G E+ GFLP KE+A E + A G + I DVL+EGQE+IVQI+KEERGNKGAAL+T+ Sbjct: 61 GKEKQGFLPFKEVA-ETLHNDVKAKGEKLTISDVLKEGQEIIVQIEKEERGNKGAALSTY 119 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 I+LAG+Y++LMPNNP+ GISR+I DR LKE ++ + LP GLI+RTAG GKS E Sbjct: 120 INLAGAYMILMPNNPKNHGISRQIVALDRQSLKEIISKIILPNHSGLIIRTAGSGKSFEE 179 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 LQW++ + W++I A +R APFLI+QES++I+R RD+LR D ++ID + + Sbjct: 180 LQWEVDYLSDLWKSINTATLTRSAPFLIYQESDIIIRTLRDHLRSDTDSVIIDELEAFQN 239 Query: 240 ARQHIAALGRPDFSSKIKLY-TGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 A++ ++ + P + +IK + E LF+H IE+Q++S F REV L +G IV D TEA Sbjct: 240 AKEFVSFV-LPHYLDRIKFFDVSEHSLFNHMGIEAQVKSVFNREVSLRTGAIIVFDPTEA 298 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 LTAIDINSARAT+G DIEETA+NTNLEA EIA QL+LRD+GGL+VIDFIDM H+ + Sbjct: 299 LTAIDINSARATKGADIEETAYNTNLEATKEIALQLQLRDIGGLVVIDFIDMASEEHRVS 358 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 +E + +A DRARIQI IS+FGLLEMSRQRL S+ ES C C G GT + Sbjct: 359 IEKAMEKATNADRARIQIGTISQFGLLEMSRQRLMNSVTESVEKPCSACHGRGTTPTIPT 418 Query: 419 LSLSILRLIEEEALKENTQEVHAIV--PVPIASYLLNEKRSAVNAIETRQDGVRCVIVPN 476 L+L+ILR + E+ Q H + + + +Y+LNEKR + +E + G++ ++PN Sbjct: 419 LALTILRQL-EDGCNAAKQTAHLTIQSSIEVITYILNEKRQEIIKLEGKH-GIKITLLPN 476 Query: 477 DQMETPHYHVLRVRKGEETPTLSY 500 M+ P++ + + + + + SY Sbjct: 477 PYMQFPNFTINKQKGSKRSQHKSY 500 >UniRef50_Q3A2X7 Ribonuclease E n=3 Tax=Bacteria RepID=Q3A2X7_PELCD Length = 926 Score = 474 bits (1220), Expect = e-132, Method: Compositional matrix adjust. Identities = 247/504 (49%), Positives = 329/504 (65%), Gaps = 6/504 (1%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLINAT EE RVA+V+ L +LDIE G EQ K NIYK + R+E L+AAFVDYG Sbjct: 3 KKMLINATHPEEHRVAIVEDGILSELDIEISGKEQTKGNIYKAVVARVETGLQAAFVDYG 62 Query: 62 AERHGFLPLKEIAREYFP---ANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 +ER GFL + EI +F A RP I D+LR GQE++VQI KEERG KGAALTT Sbjct: 63 SERLGFLQIGEIHPAFFKEAEGRVEAGKRPRINDILRRGQEILVQIVKEERGTKGAALTT 122 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSA 177 ++SL G Y+VLMP++ GISR+IE + DR +L+E + SLE+PE MG IVRTAG + Sbjct: 123 YLSLPGRYMVLMPDS-DTKGISRKIEKESDRKKLRELMDSLEIPEEMGYIVRTAGSTQKR 181 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 L+ D+ + L+ + I+ ++S AP LI++ESN+++R+ RDY D+ E+L+D+ KV Sbjct: 182 TDLKRDVDYLLRLFNKIQSLSDSTKAPSLIYKESNLVIRSIRDYFSDDMDEVLVDDAKVS 241 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 AR + P+++ +KL+ P+F+ YQIE QIES + +V LPSGGSIVIDSTE Sbjct: 242 TEARDFFQEV-MPEYAELVKLHQERRPIFARYQIEDQIESIGKNKVMLPSGGSIVIDSTE 300 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 AL AID+NS + +E TA+ TNLEAA E ARQLRLRDLGGL+VIDFIDM +H R Sbjct: 301 ALVAIDVNSGKMASEQGVEATAYKTNLEAAVETARQLRLRDLGGLVVIDFIDMRDRKHIR 360 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 +E L+EA++ D+AR+ I IS+FGLLEMSRQR+ +L +S VCP C+G+G ++ E Sbjct: 361 DIEKTLKEAMKTDKARVTIGRISQFGLLEMSRQRIKSALAAASFEVCPHCNGSGKIKTIE 420 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 + SL LR I K V A VP+ +ASYLLN KR + AIE + D + D Sbjct: 421 AQSLGFLRRIHTGLAKGRIGRVEATVPLDVASYLLNNKRVELMAIEQKNDVSIHIKGCPD 480 Query: 478 QMETPHYHVLRVRKGEETPTLSYM 501 M R+ EET +Y+ Sbjct: 481 YMNGQGEIDFHKREKEETQATAYI 504 >UniRef50_Q0F3G3 Ribonucleases G and E n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G3_9PROT Length = 727 Score = 467 bits (1201), Expect = e-129, Method: Compositional matrix adjust. Identities = 276/631 (43%), Positives = 375/631 (59%), Gaps = 47/631 (7%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 MLINA+ EE RVA+ + L++LDIES K+NIYKGK+T++E SL+AAFV+YGA Sbjct: 1 MLINASHDEESRVAIAEDGYLHELDIESAQKTLTKSNIYKGKVTKVEASLQAAFVEYGAA 60 Query: 64 RHGFLPLKEIAREYFPANYSAHGRP---NIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 R GFL L EI +Y+ P +I+DVL QE++VQ+ KEERGNKGAALTT I Sbjct: 61 RQGFLSLSEIHPDYWKDGVDKSTNPRNISIQDVLAPKQELLVQVVKEERGNKGAALTTQI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVL PN R GGISR++ ++R +KE L+ L++PE MGLI+RTAG ++ EAL Sbjct: 121 SLAGRYLVLSPNTTR-GGISRKLSDEERRSMKEILSQLDVPENMGLIIRTAGKDQTLEAL 179 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q D + + W+ I+ +E+ P P LI+ E ++ RA RD+ D+ EI +DN ++ Sbjct: 180 QRDYQYLRRLWDEIRIKSETTPPPALIYLEGDLATRAIRDHFSDDVDEIWVDNHEIYTHT 239 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + + A+ P +KLY G+IPLF Y IESQ E +RE+RL +GGSIV+D TEALT Sbjct: 240 KAFVHAV-LPGKEKLVKLYRGKIPLFRKYGIESQCEEMHEREIRLRTGGSIVLDPTEALT 298 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +ID+NSARAT+G I++TA NLEAA+EIARQLR+RD+GGLIVIDFIDM +H + VE Sbjct: 299 SIDVNSARATKGKHIDDTALAINLEAAEEIARQLRIRDIGGLIVIDFIDMASRKHGQQVE 358 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 + LR+A + D+ARIQ + ISRFGLLEMSRQRL PS+ ES+ CPRC G G +R +S++ Sbjct: 359 DMLRKACKGDKARIQFARISRFGLLEMSRQRLHPSVRESTTEPCPRCQGRGFIRTVDSMA 418 Query: 421 LSILRLIEE--EALKENTQEVHAIVPVPIASYLLNEKRSAVNAI-ETRQDGVRCVIVPND 477 L +L +E+ EA K+ T V VP YL+N KR + I ET + + I P+ Sbjct: 419 LQMLTRMEDWAEAGKKPTLVVQ--VPSDTGEYLMNNKRDNIARIEETYEIQITLQIRPD- 475 Query: 478 QMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 ++ PHY + E ++ E + L Sbjct: 476 -LDIPHYRI----------------------------ERQWTENNQQRVEVLEDTNKRVK 506 Query: 538 PPAPT-PAEPAAPVVA-PAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPA 595 PP P +P PVV P P A A + G L+ L G+ K Q Sbjct: 507 PPRPNRKLKPMKPVVGIPTPPPELAEKAEEKKKGPLTTLIAMLT-----GQSRKEKLQKE 561 Query: 596 PKAEAKPERQQDRRKPRQNNRRDRNERRDTR 626 + +A+ ER+ R+ R N R R E++ R Sbjct: 562 AEEKAQAEREAQRQSERSRNSRARGEKKSRR 592 >UniRef50_Q1K0W4 Ribonuclease, Rne/Rng family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K0W4_DESAC Length = 952 Score = 442 bits (1136), Expect = e-122, Method: Compositional matrix adjust. Identities = 227/469 (48%), Positives = 316/469 (67%), Gaps = 7/469 (1%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLINAT EE RVA+V+ L +LDIES GH+Q K NIYKG++ R+E L+AAF+DYG Sbjct: 20 KKMLINATLPEEDRVAIVEDGILTELDIESAGHQQTKGNIYKGEVIRVEQGLQAAFIDYG 79 Query: 62 AERHGFLPLKEIAREYFPANYS---AHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 A+R GFL + EI +P ++ RP I ++L+ GQ+++VQ+ KEERG KGAALTT Sbjct: 80 AQRPGFLQIGEIHPSLYPKRDDEGQSNRRPPITEILKRGQQILVQVVKEERGTKGAALTT 139 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSA 177 +SL G Y+VL+P + + GISR+I+ D R E+K L+SLELP+ MG I+RTA + + Sbjct: 140 EVSLPGRYMVLIPQSS-SRGISRKIDNDHVRKEIKNTLSSLELPDNMGYIIRTAAIDQPP 198 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 E L+ D + L + +I +E AP LI+QESN+++R+ RDY +I E+LID+ +V Sbjct: 199 EELKRDFDYLLNTYNSIVSHSEKAKAPALIYQESNLVLRSIRDYFSPEIDEVLIDDREVF 258 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 + AR A+ P++ +KL+ P+F+ YQIE QI V LPSGGSIV+D TE Sbjct: 259 QEARDFFKAV-MPEYMPLVKLHQERRPIFARYQIEEQISHLSSNTVNLPSGGSIVLDQTE 317 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 AL AID+NS + D+E TA NLEAA E+ARQLRLRD+GGLIVIDFIDM R+ R Sbjct: 318 ALVAIDVNSGKMGGEQDVEATAHRVNLEAAIEVARQLRLRDMGGLIVIDFIDMRQRRNAR 377 Query: 358 AVENRLREAVRQDRARIQISHIS-RFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDN 416 VE L+ A++ D+AR+ + IS +FGLLEMSRQR+ +LGE S+++CP C G+G +R + Sbjct: 378 EVEKALKNALKIDKARVTVGRISHQFGLLEMSRQRIKANLGEGSYNMCPHCQGSGRIRSD 437 Query: 417 ESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETR 465 ES S+++LR I+ K + + V + A+YLLN KR + +E R Sbjct: 438 ESRSIALLRRIQAGTAKGHIEAVVCTAALDTANYLLNNKRRELYDLEQR 486 >UniRef50_Q2RSE6 RNAse E n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RSE6_RHORT Length = 889 Score = 439 bits (1130), Expect = e-121, Method: Compositional matrix adjust. Identities = 242/535 (45%), Positives = 327/535 (61%), Gaps = 48/535 (8%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 KRMLI+A EE RV ++DG RL + D+E+ +Q K NIY K+ R+EPSL+AAFV+YG Sbjct: 3 KRMLIDANHPEETRVVVLDGTRLDEFDVETSTKKQLKGNIYLAKVVRVEPSLQAAFVEYG 62 Query: 62 AERHGFLPLKEIAREYF------------------------------------------- 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFNEIHPDYYQIPVADREKLIAEEALEAAADDDDEADSVETLGGDEAEDSAPA 122 Query: 79 PANYSAHGRP-NIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAG 137 P S R I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y V MPN R G Sbjct: 123 PRAKSRVSRSYKIQEVIKRRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVFMPNTTRGG 182 Query: 138 GISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKK 196 G+SR+I DR LK + L P+G +I+RTAG +S ++ D + L+ W++I++ Sbjct: 183 GVSRKITSATDRKRLKSIMGELIGPKGSAVILRTAGSERSRAEIRRDHDYLLRTWDSIRQ 242 Query: 197 AAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKI 256 + AP LIH+E ++I RA RD +DI EIL++ A+ + L P + K+ Sbjct: 243 TTLASRAPCLIHEEGSLIKRAIRDIYSRDIEEILVEGDAGYRTAKDFMKML-TPSHAKKV 301 Query: 257 KLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDI 315 + Y EI PLF YQ+ESQ+++ +L SGG +VI+ TEAL AID+NS R+TR +I Sbjct: 302 QPYKDEIMPLFHRYQVESQMDAMHSPIAQLRSGGYLVINQTEALVAIDVNSGRSTRERNI 361 Query: 316 EETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQ 375 EETA+ TNLEAADEIARQLRLRDL GLIVIDFIDM R VE R+++A+R DRARIQ Sbjct: 362 EETAYKTNLEAADEIARQLRLRDLSGLIVIDFIDMDDPRSNANVERRVKDALRNDRARIQ 421 Query: 376 ISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKEN 435 + IS FGLLEMSRQRL PSL E+S CP C G+G++R ES ++ ILR+IEEE ++ Sbjct: 422 LGRISHFGLLEMSRQRLRPSLMETSFQPCPHCHGSGSLRSVESTAIHILRIIEEEGVRRR 481 Query: 436 TQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 + EV VP IA Y+LN KR+ + AIE R D + ++ +D + P Y + RV+ Sbjct: 482 SSEVTVTVPTAIALYILNNKRTVLAAIEARYD-FQVFLLGDDTLIVPDYRMDRVK 535 >UniRef50_C6E0U6 Ribonuclease, Rne/Rng family n=8 Tax=Desulfuromonadales RepID=C6E0U6_GEOSM Length = 919 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 221/474 (46%), Positives = 311/474 (65%), Gaps = 16/474 (3%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 MLINA EE RVA+V+ RL DLD+E G+EQ + NIYKG + R+E L+AAFVD G + Sbjct: 1 MLINALHPEEARVAIVEDGRLVDLDVEIAGNEQIRGNIYKGVVVRVEQGLQAAFVDIGLK 60 Query: 64 RHGFLPLKEIAREYFPANYSA---------HGRPNIKDVLREGQEVIVQIDKEERGNKGA 114 + GFL + E+ P N+ H RP I++VLR GQE+IVQ++K ER NKG+ Sbjct: 61 KLGFLQMGEL----HPENWKWRDDIPEDQRHRRPRIQEVLRRGQELIVQVEKGERDNKGS 116 Query: 115 ALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGV 173 ALTT++SL G Y+VLMP + AG ISR++EGD +R +LKE +A + +PEG G I+RT + Sbjct: 117 ALTTYVSLPGRYMVLMPGSDSAG-ISRKVEGDGERKKLKEIIAEMTIPEGYGYIIRTEAM 175 Query: 174 GKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDN 233 G++ + LQ DL + ++ I+ + +I+QES +I+R RDY DI E+L+D+ Sbjct: 176 GRTRDELQKDLDNLIATYQGIRSKGLAMKGAGMIYQESALIIRTIRDYFSADIDEVLVDS 235 Query: 234 PKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVI 293 V R + + P F +K++ + P+FS YQ+E QI+ ++++V L SGGSI I Sbjct: 236 KDVYNDVRDCLKEI-DPAFEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSIFI 294 Query: 294 DSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPV 353 + TEAL +ID+NS ++T +E+TAF TNLEAA+E ARQLRLRDLGGLIVIDFIDM Sbjct: 295 EPTEALVSIDVNSGKSTGEKGVEDTAFKTNLEAAEEAARQLRLRDLGGLIVIDFIDMRDR 354 Query: 354 RHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 +H VE L+ A++ D+AR+ +S IS FGLLEMSRQR+ +L ++S CP C G G V Sbjct: 355 KHNAEVEKTLKTALKADKARVNVSRISEFGLLEMSRQRIRQTLNQASTLECPHCDGRGKV 414 Query: 414 RDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQD 467 + E+++LS LR + A K EV +P+ +A YLLN KR ++ IE+ D Sbjct: 415 KSVEAMALSFLRKVHAAAAKGTIGEVVGGLPLEVAYYLLNRKRHELSQIESDYD 468 >UniRef50_C6MTB8 Ribonuclease, Rne/Rng family n=1 Tax=Geobacter sp. M18 RepID=C6MTB8_9DELT Length = 937 Score = 430 bits (1105), Expect = e-118, Method: Compositional matrix adjust. Identities = 221/476 (46%), Positives = 312/476 (65%), Gaps = 16/476 (3%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLINA EE RVA+V+ RL DLD+E G+EQ + NIYKG + R+E L+AAFVD G Sbjct: 3 KKMLINALHAEEARVAIVEDGRLVDLDVEIAGNEQTRGNIYKGVVVRVEQGLQAAFVDIG 62 Query: 62 AERHGFLPLKEIAREYFPANYSA---------HGRPNIKDVLREGQEVIVQIDKEERGNK 112 ++ GFL + E+ P N+ H RP I++VLR GQE+IVQ++K ER NK Sbjct: 63 LKKLGFLQMGEL----HPENWKWRDDIPEDQRHRRPRIQEVLRRGQELIVQVEKGERDNK 118 Query: 113 GAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTA 171 G+ALTT+ SL G Y+VLMP + AG ISR++E + +R +LKE +A + +PEG G I+RT Sbjct: 119 GSALTTYASLPGRYMVLMPGSDSAG-ISRKVESEGERKKLKEIIAEMTIPEGYGYIIRTE 177 Query: 172 GVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILI 231 +G++ + LQ DL + +E I++ + +I+QES +I+R RDY DI E+L+ Sbjct: 178 AMGRTRDELQKDLDNLIALYEGIREKGLAMKGAGMIYQESALIIRTIRDYFSADIDEVLV 237 Query: 232 DNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSI 291 D+ V + R + + P F +K++ + P+FS YQ+E QI+ ++++V L SGGSI Sbjct: 238 DSKDVFKDVRDALKEID-PAFEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSI 296 Query: 292 VIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMT 351 I+ TEAL +ID+NS ++T +E+TAF TNLEAA+E ARQLRLRDLGGLIVIDFIDM Sbjct: 297 FIEPTEALVSIDVNSGKSTGEKGVEDTAFKTNLEAAEEAARQLRLRDLGGLIVIDFIDMR 356 Query: 352 PVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTG 411 +H VE L+ A++ D+AR+ +S IS FGLLEMSRQR+ +L ++S CP C G G Sbjct: 357 DRKHNSEVEKTLKSALKADKARVNVSRISEFGLLEMSRQRIRQTLNQASTLECPHCDGRG 416 Query: 412 TVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQD 467 V+ E+++LS LR + A K EV +P+ +A YLLN KR ++ IE D Sbjct: 417 KVKSVEAMALSFLRKVHAAAAKGTIGEVVGSLPLEVAYYLLNRKRHELSQIENDYD 472 >UniRef50_A8ZW09 Ribonuclease, Rne/Rng family n=2 Tax=Desulfobacteraceae RepID=A8ZW09_DESOH Length = 499 Score = 419 bits (1076), Expect = e-115, Method: Compositional matrix adjust. Identities = 221/466 (47%), Positives = 309/466 (66%), Gaps = 6/466 (1%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 ++LINA EE R+A V RL + +E+ K+NIYKG + R+EPSL+A FVDYG Sbjct: 4 KILINAVDTEECRIARVKDNRLCEFHLETTSRVTTKSNIYKGLVARVEPSLQAVFVDYGE 63 Query: 63 ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISL 122 ERHGFL +I +YF + G +I+D+++ GQE++VQ+ K+ +KGAALTTF+S+ Sbjct: 64 ERHGFLQKHDIHTDYFQ-DSKVDG--SIRDLIKPGQEMLVQVVKDPIMHKGAALTTFLSI 120 Query: 123 AGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAEALQ 181 G + VLMP + G+S++IE ++ R LKE ++ L +PE G+I+RTA G + + Sbjct: 121 PGRFCVLMPGSV-TKGVSKQIEDEEERKRLKEIVSGLRVPENFGVILRTAAKGAAKTVIA 179 Query: 182 WDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELAR 241 DLS+ ++ W+ IKK ++ AP IH+E + VRA RDYL DI EILID P V + + Sbjct: 180 KDLSYLMRLWKTIKKEGMNQKAPAAIHKERDFAVRAIRDYLTADIQEILIDEPAVHQEVK 239 Query: 242 QHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTA 301 +A L P + ++LY G P+F+ +++ESQIES F+ V+LPSGGSIV+ TEAL + Sbjct: 240 DFVA-LVSPKHAKIVRLYQGAKPIFTKHELESQIESIFENRVQLPSGGSIVLTQTEALVS 298 Query: 302 IDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVEN 361 ID+NS ++ + IEETA TNLEAA+EIARQLRLRD+GGLIVIDFIDM P ++ AVE Sbjct: 299 IDVNSGKSRQKHSIEETALQTNLEAAEEIARQLRLRDMGGLIVIDFIDMKPRKNNAAVER 358 Query: 362 RLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSL 421 L+ V++D+AR + IS+FGLLEMSRQRL S+ SS C C G G V E L + Sbjct: 359 ALKAHVKEDKARTDVGKISKFGLLEMSRQRLRQSIETSSMVTCGHCGGRGYVMATEKLGI 418 Query: 422 SILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQD 467 ++LR + E+LK V A VP +A YLLN+KR+ + +E R+D Sbjct: 419 NVLRRLRLESLKHRGVAVTATVPAVVADYLLNKKRTELLELEARRD 464 >UniRef50_Q2LU58 Ribonuclease E n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU58_SYNAS Length = 630 Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust. Identities = 222/470 (47%), Positives = 302/470 (64%), Gaps = 12/470 (2%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 MLINA E+ R+A+V+ +L + +I+ E NIYKG + ++E L+AAFV++G Sbjct: 5 MLINAVHHEQKRMAIVEDGKLVEFNIQMSLREPITGNIYKGIVLKVERGLQAAFVNFGVG 64 Query: 64 RHGFLPLKEIAREYFP-----ANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 + GFLPL++++ YF SAH R ++K GQEVIVQ+ +E G KGA LTT Sbjct: 65 KDGFLPLRDVSPAYFTEKKEAGRESAHSRGSLKI----GQEVIVQVAREVSGRKGALLTT 120 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSA 177 ++SL G YLVL+PN + GISR+IE + DR LK + +++ EGMG IVRTAG+ ++ Sbjct: 121 YLSLPGRYLVLLPNK-HSSGISRKIEAEEDRRLLKTLVEQIKIDEGMGFIVRTAGINRTK 179 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 + L D L+ W+ I+K AE+ PAP LI+QES+ VR+ RDY +I EIL+D+ + Sbjct: 180 QELSRDYQHLLRLWKEIQKRAETDPAPALIYQESDFGVRSLRDYFTSEIEEILVDDLETY 239 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 R + A+ P IK Y +P+FS Y +E QI +Q V L SGGSIVI TE Sbjct: 240 RKMRAYCKAVA-PRNLRMIKQYKERLPIFSQYNLEEQIREIYQERVELKSGGSIVISPTE 298 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 A+ ID+NS RA+ ++E+TAF TNLEAA+EI RQLRLRDLGGLIVIDFIDMT +H+ Sbjct: 299 AMITIDVNSGRASNKKNVEDTAFKTNLEAAEEIGRQLRLRDLGGLIVIDFIDMTDRKHEA 358 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 VE ++A+ DRARIQ+S IS+FG+LE+SRQ+ ++ E S+ CP CSG+G E Sbjct: 359 EVEKTFKKALTLDRARIQMSRISKFGILELSRQKKHSTIQEISYTTCPFCSGSGIRPSLE 418 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQD 467 +LS R IE EA KE + VP IA YLLN+KR+ + IET D Sbjct: 419 YTALSAFRKIETEAAKEKANALKISVPYEIADYLLNQKRTDIQRIETLYD 468 >UniRef50_C8WCX7 Ribonuclease, Rne/Rng family n=3 Tax=Zymomonas mobilis RepID=C8WCX7_ZYMMN Length = 912 Score = 406 bits (1043), Expect = e-111, Method: Compositional matrix adjust. Identities = 225/530 (42%), Positives = 308/530 (58%), Gaps = 59/530 (11%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + +MLI+A +EE RVA++ G R+ + D ES Q K NIY K+TR+EPSL+AAFVDY Sbjct: 3 LTKMLIDARHREETRVAVIKGNRIEEFDFESADRRQLKGNIYLAKVTRVEPSLQAAFVDY 62 Query: 61 GAERHGFLPLKEIAREYF-------------PANYSA----------------------- 84 G R GFL EI +Y+ YSA Sbjct: 63 GGNRQGFLAFSEIHPDYYQIPREDREALLREEEEYSARHNKQQESEDDEEGEDLSDSEAI 122 Query: 85 ------------------HGRPNIK--DVLREGQEVIVQIDKEERGNKGAALTTFISLAG 124 GR + + DV+R Q ++VQ+ KEERGNKGAALTT++SLAG Sbjct: 123 RNDANDDSLENLRNRRRHFGRHHYRIQDVIRRRQVLLVQVVKEERGNKGAALTTYLSLAG 182 Query: 125 SYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWD 183 Y VLMPN GGISR+I DR LK +A L LP MG IVRTAG+ ++ ++ D Sbjct: 183 RYCVLMPNTSNGGGISRKISNLADRKRLKSIMAELNLPSSMGCIVRTAGLQRTKTEIKRD 242 Query: 184 LSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQH 243 + + W+ I++ AP LI+ +S+++ RA RD ++I EIL++ AR Sbjct: 243 FDYLARLWDEIREKTLLSQAPALIYGDSDLVKRAIRDIYSREIDEILVEGDDGYRAARNF 302 Query: 244 IAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAID 303 + L P K++ Y PLF + +E+Q+ + +Q V+L SGG +VI+ TEAL +ID Sbjct: 303 MKLL-MPSHVRKVRPYADPAPLFQRFGVEAQLNAMYQPIVQLKSGGYLVINPTEALVSID 361 Query: 304 INSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL 363 INS R+TR +IE+TA TNLEAA EIARQLRLRD+ GLIVIDFIDM + R VE + Sbjct: 362 INSGRSTREHNIEQTATATNLEAAAEIARQLRLRDMAGLIVIDFIDMESSANIRRVEKAM 421 Query: 364 REAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSI 423 ++A++ DRARIQ+ HIS FGL+EMSRQRL + E+S CP C G+G + S L Sbjct: 422 KDALKHDRARIQVGHISSFGLMEMSRQRLRTGMLEASTVPCPHCQGSGLMLTTPSAGLMA 481 Query: 424 LRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVI 473 LR+IE+EA + N ++H + + A Y+LN+KR + +IET GV +I Sbjct: 482 LRMIEDEASRGNGSQIHVLTSLDSAIYVLNKKRKELGSIETLY-GVTILI 530 >UniRef50_Q6AIU3 Probable RNAse E n=1 Tax=Desulfotalea psychrophila RepID=Q6AIU3_DESPS Length = 883 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 206/483 (42%), Positives = 311/483 (64%), Gaps = 13/483 (2%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 R+LINA + EE R+AL++ RL + + + Q K NIYK K+ +E +L+AAFVDYG Sbjct: 380 RLLINAEEPEECRLALLEDGRLESIHVSTVTRAQTKNNIYKAKVVAVEANLQAAFVDYGT 439 Query: 63 ERHGFLPLKEIAREYFPANYSAHGRPN----------IKDVLREGQEVIVQIDKEERGNK 112 ++GFLP EI EY+ A+ S R N I+DV+ GQE++VQ+ KEE G K Sbjct: 440 VKNGFLPFSEIHPEYYRADLSESARKNVEERRWRRLKIEDVMARGQELLVQVVKEEVGKK 499 Query: 113 GAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDR-TELKEALASLELPEGMGLIVRTA 171 GA +TT++SL G +VLMP + AG ISR+I G++R ++L++ + SL +PEG G IVRTA Sbjct: 500 GANMTTYLSLPGRCVVLMPGSDSAG-ISRKIVGEERRSQLRDTMRSLGIPEGTGWIVRTA 558 Query: 172 GVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILI 231 V + EAL D+++ LK WE +++ + LI+++ ++R R++ I EIL+ Sbjct: 559 SVDINEEALARDVTYLLKLWEDVREKGQEIKDVGLIYEDHRSVMRFLREHYDPSIQEILV 618 Query: 232 DNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSI 291 D P LE + ++ L + K++L+ G P+F+ + +E QIES +Q +V LPSGGSI Sbjct: 619 DAPLALEQVNEFVSMLPANQQNVKVRLHKGSRPIFNQFSVEDQIESIYQPQVSLPSGGSI 678 Query: 292 VIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMT 351 VID TEAL AID+NS ++G + +E+ F N+EAA E ARQLRLRDLGGL+V+DFIDM Sbjct: 679 VIDPTEALVAIDVNSGSTSKGKNFDESIFQANMEAASEFARQLRLRDLGGLVVVDFIDMR 738 Query: 352 PVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTG 411 +H AVE +++ A+++D+A++ + IS+FGL+++SRQ+L + ++ VC C G G Sbjct: 739 NKKHINAVEKQVKIAMKRDKAKVDFTRISKFGLMQISRQKLGSPIEAGAYRVCQHCKGRG 798 Query: 412 TVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRC 471 VR E+L+L LR I+ A ++ ++ P+ +ASYLLN KR + +E + V Sbjct: 799 IVRAVETLALFYLRRIQTGASRKPVVKIECHFPLDVASYLLNNKRQEITEMENNNE-VEI 857 Query: 472 VIV 474 +IV Sbjct: 858 MIV 860 >UniRef50_Q1NUM8 Ribonuclease E and G n=2 Tax=Deltaproteobacteria RepID=Q1NUM8_9DELT Length = 715 Score = 394 bits (1011), Expect = e-107, Method: Compositional matrix adjust. Identities = 203/457 (44%), Positives = 298/457 (65%), Gaps = 7/457 (1%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 ++LIN + EE R+AL++ ++ IES + K NIYKG++T +E +L+AAFVD G Sbjct: 223 KLLINTDEPEECRLALLENSKVEGFYIESVSRARIKGNIYKGRVTSVEANLQAAFVDIGL 282 Query: 63 ERHGFLPLKEIAREYFPANY---SAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 E++GFL EI EY+ ++ I+D++++GQEV+V++ KE GNKG +LTT+ Sbjct: 283 EKNGFLSFNEIHPEYYQQEVDPETSWKNLKIQDMVKKGQEVLVEVVKEGSGNKGPSLTTY 342 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAE 178 +SL G +LVLMP + AG ISR+I+ ++ R +L+E + L +PEG+G IVRTA + Sbjct: 343 LSLPGRFLVLMPGSDSAG-ISRKIDDEEHRNKLREMVEGLNIPEGVGYIVRTASQEITKT 401 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 AL DL F L W I+K +S PAP L+++E N+I R RD+ DI EIL+D E Sbjct: 402 ALSQDLRFLLNLWSEIRKGGQSLPAPSLLYKEQNIISRFLRDHYTSDIREILVDEEDAAE 461 Query: 239 LARQHIAAL-GRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 R + L + +KL+ G P+F Y +E QIE FQ V LPSGGSIVI+ TE Sbjct: 462 QVRNFLQLLPASQRKKTTVKLHQGSQPIFHQYHVEKQIEEMFQPTVPLPSGGSIVINPTE 521 Query: 298 ALTAIDINSAR-ATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 AL AID+NS R +++ D EE+ F N+EAA+E+ARQLR+RDLGGLIV+DFIDM H Sbjct: 522 ALVAIDVNSGRTSSKDRDFEESIFIANMEAAEELARQLRMRDLGGLIVVDFIDMRSAAHT 581 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDN 416 R VE ++RE +++D+A++ S IS+FGL+++SRQ+++ L +S+ CP C G G +R Sbjct: 582 REVEKKVRECMKRDKAKVDFSKISKFGLMQISRQKMAAPLQTTSYKTCPYCEGRGLIRSV 641 Query: 417 ESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLN 453 E+L+LS LR I+ + ++V +P+ +A Y+LN Sbjct: 642 ENLALSHLRQIQTGMSRRRAKKVVCQLPMEVAQYILN 678 >UniRef50_A0LJB4 RNAse E n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LJB4_SYNFM Length = 495 Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust. Identities = 214/464 (46%), Positives = 291/464 (62%), Gaps = 6/464 (1%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 M+INA EE RVAL++GQ L IE+ + NIYKG +T ++PSL+AAFV+YG E Sbjct: 5 MIINAIHPEEFRVALMEGQTLEGFFIETATRGKVVGNIYKGIVTHVQPSLQAAFVNYGME 64 Query: 64 RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLA 123 R+GFLP EI EY+ + + R I+DV+ GQEV+VQ+ KEE G+KGA LTT+ISLA Sbjct: 65 RNGFLPFPEIHPEYYEED--SDERVRIQDVIHSGQEVLVQVVKEELGSKGALLTTYISLA 122 Query: 124 GSYLVLMPNNPRAGGISRRIE-GDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQW 182 G +VLMP + G +SR+IE G R LKE L++PE G+I+RTA G++ + Sbjct: 123 GRDVVLMPGQSQRG-VSRKIEDGGQRERLKELAGDLKVPEEFGVILRTAAEGRTKREVTK 181 Query: 183 DLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQ 242 D + +K WE I+K + PAP LI++E ++ VR RDY +I IL+D+ +VL+ + Sbjct: 182 DFNHLMKIWEEIRKHVQETPAPALIYKEQDLAVRVIRDYFNPNIKTILVDDREVLKQVKD 241 Query: 243 HIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAI 302 I + P ++ Y + P+ Y +E QI F+++V L SGG +VID TEAL A+ Sbjct: 242 FIRIIS-PRHDRVVRFYKEDGPITGKYNLEEQIAQIFRKKVPLKSGGHLVIDPTEALVAV 300 Query: 303 DINSARATRG-GDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVEN 361 D+NS R G G +EE F N+EAA EI RQLRLRDLGGLIVIDFIDM RH R VE Sbjct: 301 DVNSGRTNSGEGALEEMVFKVNMEAAAEIPRQLRLRDLGGLIVIDFIDMRDNRHTREVER 360 Query: 362 RLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSL 421 RL+E +++D+A+I + ISRFGLLE+SRQ L ++ S+ CP C G G VR E+ +L Sbjct: 361 RLKEEIKKDKAKITVGRISRFGLLELSRQHLGLNIMRGSYKECPLCQGAGMVRSAETTAL 420 Query: 422 SILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETR 465 LR I ++ V A +A YLLN KR + +E R Sbjct: 421 CYLRKIWLTLSQKKPASVRATFAPEVAHYLLNRKRQELTRLEER 464 >UniRef50_B8GWM7 Ribonuclease E n=6 Tax=Caulobacteraceae RepID=B8GWM7_CAUCN Length = 898 Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust. Identities = 227/549 (41%), Positives = 308/549 (56%), Gaps = 60/549 (10%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLI+A EE RV +VDG R+ + D ES +Q + NIY K+TR+EPSL+AAF++YG Sbjct: 3 KKMLIDAAHAEETRVVVVDGTRVEEFDFESQTRKQLRGNIYLAKVTRVEPSLQAAFIEYG 62 Query: 62 AERHGFLPLKEIAREYF----------------------PANYSAHGRPNIKDV------ 93 RHGFL EI +Y+ P + A G + DV Sbjct: 63 GNRHGFLAFNEIHPDYYQIPVADREALMRDDSGDDEDDTPISRRASGGDDEDDVNGGDRA 122 Query: 94 ----------------------------LREGQEVIVQIDKEERGNKGAALTTFISLAGS 125 +R Q ++VQ+ KEERGNKGAALTT++SLAG Sbjct: 123 VDDDDDDVEEELARRKRRLMRKYKIQEVIRRRQIMLVQVVKEERGNKGAALTTYLSLAGR 182 Query: 126 YLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDL 184 Y VLMPN R GGISR+I DR LK + SL++P+GMGLIVRTAG ++ ++ D Sbjct: 183 YGVLMPNTARGGGISRKITAVTDRKRLKSVVQSLDVPQGMGLIVRTAGAKRTKAEIKRDY 242 Query: 185 SFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHI 244 + L+ WE I++ AP LI++E +++ RA RD +D+ I ++ + AR + Sbjct: 243 EYLLRLWENIRENTLHSIAPALIYEEEDLVKRAIRDMYDKDLDGIWVEGDAGYKEARDFM 302 Query: 245 AALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDI 304 L P + K+ Y PLF +IE + + V L SGG +VI+ TEAL AID+ Sbjct: 303 RML-MPSQAKKVFNYRDPTPLFVKNKIEDHLAQIYSPVVPLRSGGYLVINQTEALVAIDV 361 Query: 305 NSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLR 364 NS +ATR +IE TA TN EAA+E ARQLRLRDL GLIVIDFIDM ++ R VE L+ Sbjct: 362 NSGKATRERNIEATALKTNCEAAEEAARQLRLRDLAGLIVIDFIDMDEAKNNRTVEKVLK 421 Query: 365 EAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSIL 424 +A++ DRARIQ+ IS FGL+E+SRQR + E + HVC C GTG VR ES +L+ L Sbjct: 422 DALKDDRARIQMGKISGFGLMEISRQRRRTGVLEGTTHVCEHCEGTGRVRSVESSALAAL 481 Query: 425 RLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHY 484 R +E EALK + V V + Y+LNEKR + + T G+ +V +D + Sbjct: 482 RAVEAEALK-GSGSVILKVSRSVGLYILNEKRDYLQRLLTTH-GLFVSVVVDDSLHAGDQ 539 Query: 485 HVLRVRKGE 493 + R GE Sbjct: 540 EIERTELGE 548 >UniRef50_B6INB6 Ribonuclease, Rne n=1 Tax=Rhodospirillum centenum SW RepID=B6INB6_RHOCS Length = 1035 Score = 385 bits (990), Expect = e-105, Method: Compositional matrix adjust. Identities = 194/403 (48%), Positives = 276/403 (68%), Gaps = 3/403 (0%) Query: 89 NIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DD 147 I++V++ Q ++VQ+ KEERGNKGAALTT++SL G Y VLMPN PR GGISR+I D Sbjct: 229 KIQEVIKRRQILLVQVTKEERGNKGAALTTYLSLPGRYCVLMPNTPRGGGISRKITNPAD 288 Query: 148 RTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLI 207 R +KE L L++P+GM +I+RTAG+ +S ++ DL + ++ W++I++ AP LI Sbjct: 289 RKRMKELLEGLDVPQGMSVILRTAGIERSKPEIKRDLEYLMRLWDSIRELTLQSVAPALI 348 Query: 208 HQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFS 267 ++E+N+I R+ RD DI E++++ + A+ + L P + K++ Y +IPLF Sbjct: 349 YEEANLIKRSIRDLYASDIDEVIVEGEQGYRTAKDFMRML-MPSHAKKVQPYKDDIPLFH 407 Query: 268 HYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAA 327 +Q+E IE+ F V+L SGG IVI+ TEAL AID+NS R+T+ +IEETA TNLEAA Sbjct: 408 RFQVEGAIETMFDPVVQLRSGGYIVINQTEALVAIDVNSGRSTKERNIEETALRTNLEAA 467 Query: 328 DEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEM 387 +EIARQLRLRDL GLIVIDFIDM R+ +VE RL+EA++ DRARIQ+ IS FGLLE+ Sbjct: 468 EEIARQLRLRDLAGLIVIDFIDMEEARNNASVEKRLKEAMKADRARIQLGRISPFGLLEL 527 Query: 388 SRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPI 447 SRQRL PSL E + CP C+GTG VR ES +L++LR IEEE ++ + E+ + Sbjct: 528 SRQRLRPSLQEINFERCPHCAGTGLVRSVESAALAVLRAIEEEGIRRRSAEITVTAAASL 587 Query: 448 ASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 Y+LN+KR ++ AIE R+ G+R + +D + P + + R+R Sbjct: 588 VLYILNQKRESLTAIE-RRYGLRVYLAADDSLTPPAHRLERLR 629 Score = 93.2 bits (230), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 42/77 (54%), Positives = 53/77 (68%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 KRML++AT EE RV +V G RL +LD E +Q K NIY K+ R+EPSL+AAFV+YG Sbjct: 3 KRMLVDATHPEETRVVVVSGNRLEELDFEIASRKQLKGNIYLAKVIRVEPSLQAAFVEYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFSEIHPDYY 79 >UniRef50_B5ZDP7 Ribonuclease, Rne/Rng family n=12 Tax=Alphaproteobacteria RepID=B5ZDP7_GLUDA Length = 1009 Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust. Identities = 204/422 (48%), Positives = 272/422 (64%), Gaps = 12/422 (2%) Query: 71 KEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLM 130 + IAR F NY I++V+R Q ++VQ+ KEERGNKGAALTT+ISLAG Y VLM Sbjct: 154 RRIAR--FLRNY------KIQEVIRRRQILLVQVVKEERGNKGAALTTYISLAGRYCVLM 205 Query: 131 PNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLK 189 PN+ R GG+SR+I DR LK+ +A L++P GM +IVRTAG + + D + L+ Sbjct: 206 PNSLRGGGVSRKITSVADRRRLKDVIAELQIPRGMAMIVRTAGAQRPRPEIMRDCEYLLR 265 Query: 190 HWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGR 249 W+ I+ AP LI++E+++I RA RD +D+GEIL+D + AR+ + L Sbjct: 266 LWDDIRDHTMHSVAPALIYEEASLIKRAIRDIYTRDVGEILVDGEAGWKSAREFMRML-M 324 Query: 250 PDFSSKIKLY-TGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSAR 308 P + K+K + G PLFSH+ +E ++S V+L SGG +VI+ EAL AID+NS R Sbjct: 325 PQSAPKVKCWRDGGQPLFSHFNVEGLLDSMLSPTVQLRSGGYLVINQAEALVAIDVNSGR 384 Query: 309 ATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVR 368 ATR +IEETA TNLEAA+E+ARQLRLRDL GLIVIDFIDM +H VE RL++A+R Sbjct: 385 ATRERNIEETALRTNLEAAEEVARQLRLRDLAGLIVIDFIDMESRKHNGMVERRLKDALR 444 Query: 369 QDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIE 428 DRARIQ+ IS FGLLEMSRQRL PS+ ES+ CP C GTG +R ES +L +LR +E Sbjct: 445 TDRARIQVGAISHFGLLEMSRQRLRPSIAESTFTPCPHCQGTGIIRGTESAALHVLRAVE 504 Query: 429 EEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLR 488 EE + E+ V IA Y+LN KR+ ++ IE R + V P+ + P + R Sbjct: 505 EEGARRRAAEITVHVAAEIALYILNNKRAWLSEIEKRHK-MHVVFSPDASLLPPQLRIER 563 Query: 489 VR 490 VR Sbjct: 564 VR 565 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 KRMLI+ T EE RV ++DG RL D D+E+ +Q K NIY K+ R+EPSL+AAFV+YG Sbjct: 3 KRMLIDTTHAEETRVVVMDGNRLEDYDVEASAKKQLKGNIYLAKVIRVEPSLQAAFVEYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFSEIHPDYY 79 >UniRef50_Q0FAK9 Ribonuclease, Rne/Rng family protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FAK9_9RHOB Length = 870 Score = 376 bits (965), Expect = e-102, Method: Compositional matrix adjust. Identities = 188/398 (47%), Positives = 267/398 (67%), Gaps = 3/398 (0%) Query: 90 IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDR 148 I++V++ Q +++Q+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I DR Sbjct: 234 IQEVIKVRQILLIQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNVQDR 293 Query: 149 TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH 208 ++KE + L++P+G GLIVRTAG ++ + + D + ++ W I+ AP I+ Sbjct: 294 KKIKEITSELDVPKGAGLIVRTAGAKRNRDDILRDYEYLMRQWTQIRDITLESIAPTQIY 353 Query: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSH 268 E ++I R+ RD DI EI+++ + E A+ ++ L P ++K Y ++PL++ Sbjct: 354 AEGDIIKRSIRDLYNNDIDEIIVEGERGFEAAKAYMTML-MPSHVKRVKQYKNKMPLYAR 412 Query: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328 YQ+E+ + F V+L SGG IVI TEAL A+D+NS +AT+ IE+TA TNLEAAD Sbjct: 413 YQVENYLGGMFNPTVQLKSGGYIVIGVTEALVAVDVNSGKATKESSIEKTALKTNLEAAD 472 Query: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388 E+ARQLRLRDL GLIVIDFIDM R+ AVE R+++ ++ DRARIQ+ IS FGL+EMS Sbjct: 473 EVARQLRLRDLAGLIVIDFIDMEERRNNIAVEKRMKDKLKSDRARIQVGRISGFGLMEMS 532 Query: 389 RQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIA 448 RQRL P + E++ CP C GTG VR ++S +LSILR IEEEA+++ T+E+ A VPV I+ Sbjct: 533 RQRLRPGMLEATTKECPHCLGTGLVRSDDSQALSILREIEEEAIRKRTKEIQATVPVGIS 592 Query: 449 SYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHV 486 +YLLN KR + IE+ Q + +I + M Y + Sbjct: 593 NYLLNHKRENIALIES-QYAISIIIEASASMIGTDYEL 629 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 41/77 (53%), Positives = 53/77 (68%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLI+AT EE RV +V+G ++ + D ES Q NIY K+TR+EPSL+AAFVDYG Sbjct: 3 KKMLIDATHAEETRVVVVEGNKVDEFDFESLNKRQLSGNIYLAKVTRVEPSLQAAFVDYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLSFAEIHPDYY 79 >UniRef50_UPI00003842F2 COG1530: Ribonucleases G and E n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI00003842F2 Length = 836 Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust. Identities = 192/403 (47%), Positives = 272/403 (67%), Gaps = 4/403 (0%) Query: 90 IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDDR 148 I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GG+SR+I DR Sbjct: 182 IQEVIKRRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGVSRKIVSATDR 241 Query: 149 TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH 208 LK +++P+GM +I+RTAG +S ++ D + L+ W+++++ AP L++ Sbjct: 242 RRLKSIANEMDIPDGMAVIIRTAGSERSKTEIKRDYEYLLRMWDSVRELTLKSSAPALVY 301 Query: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEI-PLFS 267 +E+++I R+ RD +DI E+L+D + LA+ ++ L P + K++ Y + P+F Sbjct: 302 EEASLIKRSIRDLYSRDIDEVLVDGDEGYRLAKDYMRMLT-PSHAKKVQPYKDPVMPMFH 360 Query: 268 HYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAA 327 YQ+E+Q+++ V+L SGG IVI TEAL AID+NS RAT+ IEETA TN+EAA Sbjct: 361 RYQVEAQLDAMHSPVVQLKSGGYIVISQTEALVAIDVNSGRATKERHIEETALKTNMEAA 420 Query: 328 DEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEM 387 DE+ARQLRLRDL GLIVIDFIDM R+ AVE RL+EA++ DRARIQ+ IS FGLLE+ Sbjct: 421 DEVARQLRLRDLAGLIVIDFIDMEENRNNHAVERRLKEALKNDRARIQVGKISAFGLLEL 480 Query: 388 SRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPI 447 SRQRL PSL E++ CP C GTG VR ES ++ ILR IEEE ++ + EV V I Sbjct: 481 SRQRLRPSLQETTFSPCPHCGGTGLVRSVESAAVHILRAIEEEGIRRRSSEVTVYVSSAI 540 Query: 448 ASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 A Y+LN+KRSA+ AIE R + + +D + P + + +V+ Sbjct: 541 ALYILNQKRSALAAIEERYE-FDVFLSGDDTLIPPAFRMDKVK 582 Score = 92.8 bits (229), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 42/75 (56%), Positives = 53/75 (70%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 MLI+AT EE RV +V+G RL +LD+E+ Q K NIY K+ R+EPSL+AAFV+YG Sbjct: 1 MLIDATHPEETRVVVVNGTRLEELDVETSTKRQLKGNIYLAKVVRVEPSLQAAFVEYGGN 60 Query: 64 RHGFLPLKEIAREYF 78 RHGFL EI +YF Sbjct: 61 RHGFLAFSEIHPDYF 75 >UniRef50_Q0BVH1 Ribonuclease E n=2 Tax=Acetobacteraceae RepID=Q0BVH1_GRABC Length = 949 Score = 364 bits (935), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 192/419 (45%), Positives = 263/419 (62%), Gaps = 14/419 (3%) Query: 78 FPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAG 137 F NY I++V++ Q +++Q+ KEERGNKGAAL+T+ISLAG Y VLMPN+PR G Sbjct: 248 FLRNY------KIQEVIKRRQILLIQVVKEERGNKGAALSTYISLAGRYCVLMPNSPRGG 301 Query: 138 GISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKK 196 G+SR+I DR LK+ + +LE+P GMG+IVRTAG + + D + L+ W+ I+ Sbjct: 302 GVSRKITSATDRRRLKDIIGALEIPRGMGIIVRTAGGNRPKAEIMRDCEYLLRLWDDIRD 361 Query: 197 AAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKI 256 AP LIH+E+++I RA RD I E+L+D + AR + L P + K+ Sbjct: 362 ITLRSSAPALIHEEASLIKRAIRDVYTSTIEEVLVDGEEGWRAARDIMRML-MPSHARKV 420 Query: 257 KLYTGEI-----PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATR 311 + + PLF+HYQ+ESQ+++ V L SGG +VI+ EAL AID+NS R+T+ Sbjct: 421 ICWNADKERAGQPLFAHYQVESQLDAILAPNVSLKSGGYLVINQAEALVAIDVNSGRSTK 480 Query: 312 GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDR 371 IEETA TNLEAADE+ARQLRLRDL GLIVIDFIDM +H VE RL+EA++ DR Sbjct: 481 ERGIEETALRTNLEAADEVARQLRLRDLAGLIVIDFIDMESRKHNGMVERRLKEALKNDR 540 Query: 372 ARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEA 431 ARIQ+ IS FGLLEMSRQRL PSL E+S CP C+G G VR E S+ +LR IEEE Sbjct: 541 ARIQVGQISSFGLLEMSRQRLRPSLTETSMITCPHCNGLGLVRTTEGASVHVLRAIEEEG 600 Query: 432 LKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 + E+ +A Y+LN +R + +E+R G++ + + Q + ++R Sbjct: 601 ARRRYAEIMVHAAADVAFYILNNRRDFLATLESRF-GMKVLFSADTQFSGSQLRIEKIR 658 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 41/77 (53%), Positives = 55/77 (71%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLI+A+ EE RV ++DG RL D D+E+ +Q K NIY K+ R+EPSL+AAFV+YG Sbjct: 51 KKMLIDASHAEETRVVVMDGNRLEDFDVEAASRKQIKGNIYLAKVVRVEPSLQAAFVEYG 110 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 111 GNRHGFLAFSEIHPDYY 127 >UniRef50_B8EPB2 Ribonuclease, Rne/Rng family n=1 Tax=Methylocella silvestris BL2 RepID=B8EPB2_METSB Length = 1080 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 186/399 (46%), Positives = 264/399 (66%), Gaps = 3/399 (0%) Query: 90 IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDDR 148 I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I + DR Sbjct: 346 IQEVIKRRQVLLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITDSTDR 405 Query: 149 TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH 208 LK LE+PEGMG+I+RTAG ++ ++ D + L+ WE +++ AP L++ Sbjct: 406 QRLKSIAQELEVPEGMGVILRTAGASRTKPEVKRDFEYLLRMWETVRETTLKSSAPTLVY 465 Query: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSH 268 +E ++I RA RD +DI +I++ K AR + L P + ++ Y P+FS Sbjct: 466 EEGSLIKRAIRDLFNKDIDDIVVAGDKGYREARDFMRLL-MPSHVNSVQPYRDAQPIFSK 524 Query: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328 +E+Q+++ F +V L SGG IVI+ TEAL AID+NS R+TR +IE+TA TNLEAAD Sbjct: 525 SDVETQLDAMFLNQVTLKSGGYIVINQTEALVAIDVNSGRSTREHNIEDTALRTNLEAAD 584 Query: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388 E+ARQLRLRDL GLIV+DFIDM R+ RAVE RL++A++ DRARIQ+ IS FGLLEMS Sbjct: 585 EVARQLRLRDLAGLIVVDFIDMEEGRNNRAVERRLKDALKNDRARIQVGRISHFGLLEMS 644 Query: 389 RQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIA 448 RQR+ + E S +CP CSG+G +R S++L +LR+ E+ LK + ++ +A Sbjct: 645 RQRIRTGVLEGSTELCPHCSGSGILRSTASIALHVLRVAEDALLKSASHDLIIRTRSAVA 704 Query: 449 SYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVL 487 Y+LNEKR+ + +E R+ GV I +D + YH + Sbjct: 705 LYILNEKRAHLRDLE-RRFGVAVSIEVDDSLIGSVYHAM 742 Score = 90.5 bits (223), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 39/77 (50%), Positives = 53/77 (68%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+A+ EE RV ++ G R+ + D ES +Q + NIY K+TR+EPSL+AAFVDYG Sbjct: 3 NKMLIDASHPEETRVVVLRGNRVEEFDFESASKKQLRGNIYLAKVTRVEPSLQAAFVDYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFSEIHPDYY 79 >UniRef50_Q1PY04 Strongly similar to ribonuclease E (RNase E) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PY04_9BACT Length = 509 Score = 363 bits (932), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 200/468 (42%), Positives = 291/468 (62%), Gaps = 9/468 (1%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 RMLINA + EE R+A+++ L +L IE EQ NIYKG++ IEP+LEAAFVD G Sbjct: 10 RMLINAIEPEECRIAILENNILEELYIERSSREQIAGNIYKGRVVNIEPNLEAAFVDIGL 69 Query: 63 ERHGFLPLKEIAREYFPANYSAHGRP------NIKDVLREGQEVIVQIDKEERGNKGAAL 116 +++GFL ++ N P I+DVL++G+E++VQ+ KE G KG +L Sbjct: 70 KKNGFLHASDVLVPSEGKNQGEEADPPPVRHHRIRDVLQQGKEILVQVTKESLGTKGPSL 129 Query: 117 TTFISLAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGK 175 TT+ISL G YLVLMP R G +S++I E ++R LK+ L SL P+ +G IVRTAGV + Sbjct: 130 TTYISLPGRYLVLMPEVKRYG-VSKKITEEEERQRLKKILESLNPPKNIGFIVRTAGVQQ 188 Query: 176 SAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPK 235 + LQ D + LK W+ I K ++ AP +I+QES++++R RD QDI EI++D+ Sbjct: 189 TKRELQKDFHYLLKLWKNICKKSKEIDAPGVIYQESDLVIRVIRDIFSQDINEIIVDSES 248 Query: 236 VLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDS 295 V + R+ + + P + ++K Y E PLF ++ IE+ IE R++ L GGSIV++ Sbjct: 249 VFKRTREFLRII-MPKYEKQLKFYNKEKPLFHNFGIENAIEEINSRKIPLLHGGSIVLEQ 307 Query: 296 TEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRH 355 TEAL AID+NS + D EETAF TN+ AA EIARQ+RLRDLGG+IVIDFIDM +H Sbjct: 308 TEALVAIDVNSGKYKGKCDPEETAFRTNMIAAKEIARQIRLRDLGGVIVIDFIDMRNEKH 367 Query: 356 QRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRD 415 +AVE + +++++ RAR ++ +S+FG +E++RQR+ PSL + C C GTG + Sbjct: 368 IQAVEKAIADSLKRHRARTKMLKMSKFGTIEITRQRIRPSLRDVLFEECKFCCGTGYAKT 427 Query: 416 NESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIE 463 ESL L+I+R ++ + + YL N+KR + IE Sbjct: 428 VESLCLNIMRDVKFALHLPQVVRIEITSNNDVVDYLQNQKRKQMAEIE 475 >UniRef50_B0UJB2 Ribonuclease, Rne/Rng family n=4 Tax=Methylobacterium RepID=B0UJB2_METS4 Length = 1092 Score = 362 bits (930), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 190/402 (47%), Positives = 264/402 (65%), Gaps = 4/402 (0%) Query: 89 NIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDD 147 I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I D Sbjct: 406 KIQEVIKRRQVILVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTGRGGGISRKITSAAD 465 Query: 148 RTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLI 207 R LKE A LE+P+GMG+I+RTAG ++ ++ D + ++ WE++++ S AP L+ Sbjct: 466 RKRLKEIAADLEVPDGMGVILRTAGASRTKPEIKRDFEYLMRLWESVRELTLSSSAPALV 525 Query: 208 HQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFS 267 ++E ++I RA RD +DI E+L+ A+ + L P S +K Y PLF+ Sbjct: 526 YEEGSLIKRAIRDLYNKDIDEVLVAGDDAYREAKDFMRML-MPSQSKVVKPYRDPTPLFA 584 Query: 268 HYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAA 327 Y +E Q+++ F V L SGG +VI+ TEAL +ID+NS RATR DIE+TA TNLEAA Sbjct: 585 RYGVEQQLDAMFSNHVALRSGGYLVINPTEALVSIDVNSGRATREHDIEDTALKTNLEAA 644 Query: 328 DEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEM 387 +E+ARQLRLRDL GLIVIDFIDM R+ RAVE +L E ++ DRARIQ+ IS FGLLEM Sbjct: 645 EEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVERKLNECLKDDRARIQVGRISPFGLLEM 704 Query: 388 SRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPI 447 SRQR+ + ESS CP C G+G VR S++L ILR IEE +K ++ + + Sbjct: 705 SRQRIRTGVLESSSVPCPHCGGSGFVRATSSVALQILRAIEEALIKSSSHNLILRTRTDV 764 Query: 448 ASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM-ETPHYHVLR 488 A Y+LN+KR + +ETR GV + ++++ T +H+ R Sbjct: 765 ALYILNQKRGHLRELETRF-GVSITVSADERLPPTSAFHLDR 805 Score = 85.9 bits (211), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 37/77 (48%), Positives = 51/77 (66%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+A+ EE RV V G ++ + D E+ Q + NIY K+TR+EPSL+AAFV+YG Sbjct: 3 NKMLIDASHPEETRVVTVKGSKVEEFDFEAANRRQLRGNIYLAKVTRVEPSLQAAFVEYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFSEIHPDYY 79 >UniRef50_A8LRP5 Ribonuclease n=35 Tax=Rhodobacterales RepID=A8LRP5_DINSH Length = 1026 Score = 361 bits (927), Expect = 7e-98, Method: Compositional matrix adjust. Identities = 187/377 (49%), Positives = 252/377 (66%), Gaps = 2/377 (0%) Query: 90 IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-DR 148 I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I DR Sbjct: 358 IQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITNAVDR 417 Query: 149 TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH 208 +LKE + +E+P G GLIVRTAG ++ ++ D + + WE I+ AP I+ Sbjct: 418 KKLKEIASEIEVPRGAGLIVRTAGAKRTKTEIKRDYDYLKRLWEQIRDLTLKSIAPAPIY 477 Query: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSH 268 +E N+I R+ RD +DI E+L++ + +A+ + L P + +KLY +PLF+ Sbjct: 478 EEGNLIKRSIRDLYSRDIDEVLVEGEEGYRVAKDFMKML-MPSHAKNVKLYNENLPLFAR 536 Query: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328 YQ+ES + F V+L SGG +VI TEAL AID+NS RAT+ G IEETA TNLEAA+ Sbjct: 537 YQVESYLAGMFNPTVQLKSGGYLVIGVTEALVAIDVNSGRATKEGSIEETALKTNLEAAE 596 Query: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388 E+ARQ+RLRDL GLIVIDFIDM R+ AVE RL++ ++ DRARIQ+ IS FGLLEMS Sbjct: 597 EVARQVRLRDLAGLIVIDFIDMEERRNNTAVEKRLKDKLKTDRARIQVGRISGFGLLEMS 656 Query: 389 RQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIA 448 RQRL P + E + C C GTG +R + SL+LSI+R +EEE ++ +EV PV + Sbjct: 657 RQRLRPGMLEITTQPCNHCHGTGLIRSDNSLALSIVRALEEEGMRRRVREVLVKAPVNVI 716 Query: 449 SYLLNEKRSAVNAIETR 465 +YL NEKR + IE R Sbjct: 717 NYLFNEKREHIALIEGR 733 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 42/77 (54%), Positives = 53/77 (68%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLI+AT EE RV +VDG ++ + D ES Q NIY K+TR+EPSL+AAFVDYG Sbjct: 3 KKMLIDATHAEETRVVVVDGTKVEEFDFESVNKRQLAGNIYLAKVTRVEPSLQAAFVDYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFSEIHPDYY 79 >UniRef50_C0R3W8 Ribonuclease, Rne/Rng family protein n=9 Tax=Wolbachia RepID=C0R3W8_WOLWR Length = 590 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 196/512 (38%), Positives = 296/512 (57%), Gaps = 52/512 (10%) Query: 2 KRMLI--NATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 KR+L+ N+T E+RVAL ++ + + E +Q + NIY I RIEPSL+A F++ Sbjct: 6 KRLLLIENSTCSNEVRVALSVNNKVVEFEQEFKEKKQLRGNIYVAYIKRIEPSLQAVFIE 65 Query: 60 YGAERHGFLPLKEIAREYFP--------------------------ANYSA--------- 84 YG + GFL EI+ +YF AN S+ Sbjct: 66 YGKNKQGFLSFSEISLDYFNIPEKEKETIFESYSNDDYTEKGNDTIANVSSDSAASKNVN 125 Query: 85 ------------HGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPN 132 + + ++DV+ Q+V+VQ+ KEERGNKGA+ TT+I+L G Y V MPN Sbjct: 126 ESGSGFVREVPLYKKYKLQDVISVNQKVLVQLTKEERGNKGASFTTYITLVGRYCVFMPN 185 Query: 133 NPRAGGISRRIE-GDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHW 191 + GG+SRRIE + R +LKE L+S+ LP+ GLIVRT G GK+ + ++ D ++ W Sbjct: 186 SMSKGGVSRRIEDANVRKQLKEILSSINLPKRSGLIVRTVGSGKNKKEIEQDYNYLSSLW 245 Query: 192 EAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPD 251 ++I+K A S P LI+ E++VI+R+ RD+ I E+++ + E RQ+ A Sbjct: 246 QSIQKNAFSVNVPSLIYNEADVIMRSVRDFCSDGI-EVIVSGKEAFEAVRQY-ANNALKG 303 Query: 252 FSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATR 311 + +LY G P+F++Y IE QI + V LPSGGS++I TEA +ID+NS + T Sbjct: 304 SKLRYRLYRGYAPIFTYYGIEDQISELYSNRVELPSGGSLIITLTEAFVSIDVNSGKMTG 363 Query: 312 GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDR 371 IEETA+ TN+EA EI+RQ+ LR L GLIV+DFIDM ++ RAVE+ +++A + D+ Sbjct: 364 EDSIEETAYRTNMEAVPEISRQVNLRGLSGLIVVDFIDMLKYQYCRAVESAIKQAFKDDK 423 Query: 372 ARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEA 431 A++Q S+I+ FGL+ SRQR+ P++ E + C C GTG V+ NE + SILR ++ A Sbjct: 424 AKVQFSYINDFGLMVFSRQRIKPNIQEINTTECLHCKGTGRVKSNEVIVSSILRDLQHIA 483 Query: 432 LKENTQEVHAIVPVPIASYLLNEKRSAVNAIE 463 K + + + +++ N KR+ V+ IE Sbjct: 484 NKNRNKSFDLVAHSAVIAHIFNNKRNTVSTIE 515 >UniRef50_Q3J4J9 RNAse E n=6 Tax=Rhodobacteraceae RepID=Q3J4J9_RHOS4 Length = 936 Score = 360 bits (924), Expect = 2e-97, Method: Compositional matrix adjust. Identities = 185/401 (46%), Positives = 264/401 (65%), Gaps = 3/401 (0%) Query: 87 RPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EG 145 R I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I + Sbjct: 208 RYKIQEVIKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGISRKITQA 267 Query: 146 DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPF 205 DR +LKE + LE+PEG GLI+RTAG ++ + ++ D + L+ WE I+ AP Sbjct: 268 ADRKKLKEIASELEVPEGAGLIIRTAGAKRTKQEIRRDYEYLLRLWEQIRDLTLKSVAPA 327 Query: 206 LIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPL 265 I++E ++I R RD ++I E+L++ A+ + + P + ++ Y +PL Sbjct: 328 PIYEEGDLIKRTIRDLFNREIEEVLVEGETGYRTAKDFMRMI-MPAHARQVIRYDEPMPL 386 Query: 266 FSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLE 325 F+ YQ+ES + F V+L SGG IVI TEAL AID+NS RAT+ G IEETA TNLE Sbjct: 387 FARYQVESYLSGMFNPVVQLKSGGYIVIGVTEALVAIDVNSGRATKEGSIEETALKTNLE 446 Query: 326 AADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLL 385 AA+E+ARQLRLRDL GLIVIDFIDM ++ AVE RL++ ++ DRARIQ+ IS FGL+ Sbjct: 447 AAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAVEKRLKDKLKTDRARIQVGRISGFGLM 506 Query: 386 EMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPV 445 EMSRQRL P + ES+ C C GTG +R ++SL+L +LR +EEE ++ ++EV P+ Sbjct: 507 EMSRQRLRPGMLESTTQPCAHCHGTGLIRSDDSLALQVLRQLEEEGTRKRSKEVLLRAPI 566 Query: 446 PIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHV 486 + ++L+N KR + IE R G+ + + + +P Y + Sbjct: 567 AVVNFLMNSKREHIAMIEARY-GMAVRVEADPSLSSPDYVI 606 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 41/77 (53%), Positives = 53/77 (68%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLI+AT EE RV +VDG ++ + D E+ Q NIY K+TR+EPSL+AAFVDYG Sbjct: 3 KKMLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVDYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFAEIHPDYY 79 >UniRef50_Q92QJ4 Probable ribonuclease E n=1 Tax=Sinorhizobium meliloti RepID=Q92QJ4_RHIME Length = 924 Score = 358 bits (919), Expect = 6e-97, Method: Compositional matrix adjust. Identities = 183/400 (45%), Positives = 262/400 (65%), Gaps = 3/400 (0%) Query: 90 IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDR 148 I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I DR Sbjct: 243 IQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNLQDR 302 Query: 149 TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH 208 LKE L++P+GMG+I+RTAG ++ ++ D + ++ WE ++ + AP L++ Sbjct: 303 KRLKEIARGLDVPQGMGVILRTAGANRTKVEIKRDFEYLMRLWENVRTLTLNSTAPCLVY 362 Query: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSH 268 +E ++I R+ RD +DI EI++ + + A+ + L P + ++ Y P+FS Sbjct: 363 EEGSLIKRSIRDLYNKDISEIVVSGEEGYKEAKGFMKML-MPSHAKVVQPYRDVHPIFSR 421 Query: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328 IE+Q++ Q +V L SGG I+I+ TEAL +ID+NS R+TR IE+TA TNLEAA+ Sbjct: 422 SGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHSIEDTALQTNLEAAE 481 Query: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388 E+ARQLRLRDL GLIVIDFIDM R+ R+VE +L++ ++ DRARIQ+ IS FGLLEMS Sbjct: 482 EVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEMS 541 Query: 389 RQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIA 448 RQR+ S+ ES+ CP C+GTG +R S++L +LR IEE LK T ++ IA Sbjct: 542 RQRIRASVLESTMQTCPHCNGTGHIRSQSSVALHVLRGIEEHLLKNTTHDISVRTTPDIA 601 Query: 449 SYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLR 488 YLLN+KRS++ E R GV I + + H+ + R Sbjct: 602 LYLLNQKRSSITDYEQRF-GVSIFIEADAHVGAQHFAIDR 640 Score = 90.9 bits (224), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 40/76 (52%), Positives = 53/76 (69%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 +MLI+A+ EE RV +V G R+ + D ES +Q + NIY K+TR+EPSL+AAFVDYG Sbjct: 4 KMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYGG 63 Query: 63 ERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 64 NRHGFLAFAEIHPDYY 79 >UniRef50_D2LHL1 Ribonuclease, Rne/Rng family n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LHL1_RHOVA Length = 1049 Score = 356 bits (914), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 184/396 (46%), Positives = 254/396 (64%), Gaps = 3/396 (0%) Query: 90 IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDR 148 I++V++ Q V++Q+ KEERG+KGAALTT++SLAG Y VLMPN GGISR+I DR Sbjct: 329 IQEVIKRNQIVLIQVVKEERGSKGAALTTYLSLAGRYTVLMPNTASGGGISRKITVPADR 388 Query: 149 TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH 208 LKE L++PEGMGLI+RTAG ++ ++ D + L+ WE ++ AP L++ Sbjct: 389 KRLKEIAQELDVPEGMGLIIRTAGASRTKAEIKRDFEYLLRLWENVRDLTLKSTAPCLVY 448 Query: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSH 268 +E ++I R+ RD +DI EIL+ + AR+ + L P + + LY P+F+ Sbjct: 449 EEGDLIKRSIRDLYNKDIDEILVAGDEAHHEAREFMRML-MPSHAKNVLLYKEPEPIFTK 507 Query: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328 Y++E Q+ F V L SGG IV++ TEAL AID+NS R+TR IE+TA TN+EAA+ Sbjct: 508 YEVERQLNQMFSPVVTLKSGGYIVLNQTEALVAIDVNSGRSTREYSIEDTALKTNMEAAE 567 Query: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388 E+ARQ+RLRDL GLIVIDFIDM R+ R+VE +L+E++R DRARIQ+ HIS FGL+EMS Sbjct: 568 EVARQVRLRDLAGLIVIDFIDMDERRNNRSVERKLKESLRHDRARIQVGHISHFGLMEMS 627 Query: 389 RQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIA 448 RQRL + E S CP C G G +R ES++L ILR IE+ + + A Sbjct: 628 RQRLRQGVVEVSTVPCPVCQGVGHIRSIESVALMILRSIEDHLRTQGAANITLTASTEAA 687 Query: 449 SYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHY 484 Y+LN KRS + IE R GV V+ P+D+ H+ Sbjct: 688 LYILNNKRSYLRDIELRY-GVTIVLQPDDKAHGAHF 722 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 39/77 (50%), Positives = 51/77 (66%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+AT EE RV + G R+ + D ES +Q + NIY K+ RIEPSL+AAFV+YG Sbjct: 3 NKMLIDATHPEETRVVVTRGNRVEEFDYESASRKQLRGNIYLAKVARIEPSLQAAFVNYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFAEIHPDYY 79 >UniRef50_B9JDP7 Ribonuclease E protein n=3 Tax=Alphaproteobacteria RepID=B9JDP7_AGRRK Length = 960 Score = 356 bits (913), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 183/400 (45%), Positives = 259/400 (64%), Gaps = 3/400 (0%) Query: 90 IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDR 148 I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I DR Sbjct: 255 IQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNPQDR 314 Query: 149 TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH 208 LKE LE+P GMG+I+RTAG ++ ++ D + ++ WE ++ + AP L++ Sbjct: 315 KRLKEIAKMLEVPLGMGVILRTAGANRTKVEVKRDFEYLMRLWENVRTLTLASTAPCLVY 374 Query: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSH 268 +E ++I R+ RD +DI E+++ + A+ + L P + ++ Y P+FS Sbjct: 375 EEGSLIKRSIRDLYNKDISEVIVSGEEGYREAKDFMKML-MPSHAKVVQPYRDIHPIFSR 433 Query: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328 IE+Q++ Q +V L SGG ++++ TEAL +ID+NS R+TR IE+TA TNLEAAD Sbjct: 434 SGIEAQLDRMLQPQVTLKSGGYLIMNQTEALVSIDVNSGRSTREHSIEDTALQTNLEAAD 493 Query: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388 E+ARQLRLRDL GLIVIDFIDM R+ RAVE +L+E ++ DRARIQ+ IS FGLLEMS Sbjct: 494 EVARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKNDRARIQVGRISHFGLLEMS 553 Query: 389 RQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIA 448 RQR+ S+ ES+ VC C G+G VR S++L +LR IEE LK T ++ IA Sbjct: 554 RQRIRASVLESTTQVCSHCGGSGHVRSQSSVALHVLRGIEEYLLKNTTHDITVRTTPEIA 613 Query: 449 SYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLR 488 YLLN KR + E+R GV +I ++ + H+ + R Sbjct: 614 LYLLNHKRQTIVDYESRF-GVAIIIGADNAVGAQHFAIDR 652 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 40/76 (52%), Positives = 54/76 (71%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 +MLI+A+ +EE RV +V G R+ + D ES +Q + NIY K+TR+EPSL+AAFVDYG Sbjct: 4 KMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVDYGG 63 Query: 63 ERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 64 NRHGFLAFAEIHPDYY 79 >UniRef50_C6QC83 Ribonuclease, Rne/Rng family n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QC83_9RHIZ Length = 1025 Score = 356 bits (913), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 186/400 (46%), Positives = 258/400 (64%), Gaps = 3/400 (0%) Query: 90 IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDR 148 I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I DR Sbjct: 296 IQEVIKRRQIILVQVVKEERGNKGAALTTYLSLAGRYTVLMPNTARGGGISRKITNPQDR 355 Query: 149 TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH 208 LK LE+PEGMGLI+RTAG ++ + ++ D + L+ WE+++ AP L++ Sbjct: 356 RRLKSIAQELEVPEGMGLIIRTAGAARTKQEIKRDFEYLLRLWESVRDLTLQSTAPSLVY 415 Query: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSH 268 +E ++I R+ RD +D+ EI++ + A + L P + + Y PLF+ Sbjct: 416 EEGDLIKRSIRDLYNKDVEEIVVAGDAGHQEAADFMKML-MPSHAKNVVAYREPTPLFTR 474 Query: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328 Y +E Q+ + FQ +V L SGG IVI+ TEAL AID+NS ++TR IEETA TNLEAAD Sbjct: 475 YGVERQLNAMFQPQVTLRSGGYIVINQTEALVAIDVNSGKSTREFSIEETALATNLEAAD 534 Query: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388 EIARQL+LRDL GLIVIDFIDM R+ RAVE RL++A+R DRARIQ+ IS FGL+EMS Sbjct: 535 EIARQLKLRDLAGLIVIDFIDMEEKRNNRAVERRLKDALRFDRARIQLGRISHFGLMEMS 594 Query: 389 RQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIA 448 RQRL + E S C C GTG +R ES++L++LR IE+ + A +A Sbjct: 595 RQRLRTGVLEGSTSQCAHCQGTGIIRSTESIALAVLRGIEDAITAGANGPLVATTTSAVA 654 Query: 449 SYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLR 488 Y+LN KR+ V +E R G ++ +D+++ ++ V R Sbjct: 655 LYILNSKRAYVADMEVRH-GYSVTVLGSDRVQGANFTVER 693 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 37/76 (48%), Positives = 50/76 (65%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 +MLI+AT EE RV + R+ + D ES + + NIY K+TR+EPSL+AAFVDYG Sbjct: 5 KMLIDATHPEETRVVVQRNGRVEEFDFESAARKLLRGNIYLAKVTRVEPSLQAAFVDYGG 64 Query: 63 ERHGFLPLKEIAREYF 78 RHGFL E+ +Y+ Sbjct: 65 NRHGFLAFNEVHPDYY 80 >UniRef50_B5ZYQ5 Ribonuclease, Rne/Rng family n=7 Tax=Alphaproteobacteria RepID=B5ZYQ5_RHILW Length = 965 Score = 355 bits (912), Expect = 4e-96, Method: Compositional matrix adjust. Identities = 186/400 (46%), Positives = 258/400 (64%), Gaps = 3/400 (0%) Query: 90 IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDR 148 I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I DR Sbjct: 267 IQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNPADR 326 Query: 149 TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH 208 LKE LE+P+GMG+I+RTAG ++ ++ D + ++ WE ++ + AP L++ Sbjct: 327 KRLKEIARMLEVPQGMGVILRTAGANRTKVEVKRDFEYLMRLWENVRTLTLASTAPCLVY 386 Query: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSH 268 +E ++I R+ RD +DIGEI++ + A+ + L P + ++ Y P+FS Sbjct: 387 EEGSLIKRSIRDLYNKDIGEIIVAGEEGYREAKDFMKML-MPSHAKVVQPYRDIHPIFSR 445 Query: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328 IE+Q++ Q +V L SGG ++++ TEAL +ID+NS R+TR IE+TA TNLEAA+ Sbjct: 446 SGIEAQLDRMLQPQVTLRSGGYLIMNQTEALVSIDVNSGRSTREHSIEDTALQTNLEAAE 505 Query: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388 EIARQLRLRDL GLIVIDFIDM R+ RAVE +L+E ++ DRARIQ+ IS FGLLEMS Sbjct: 506 EIARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKNDRARIQVGRISHFGLLEMS 565 Query: 389 RQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIA 448 RQR+ S+ ES+ VC C G+G VR S++L +LR IEE LK T + IA Sbjct: 566 RQRIRASVLESTTQVCSHCGGSGHVRSQSSVALHVLRGIEEYLLKNTTHNISVRTTPDIA 625 Query: 449 SYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLR 488 YLLN KR + E R GV VI + + H+ + R Sbjct: 626 LYLLNHKRQTIIDYENRF-GVAIVIDADGSVGAQHFAIDR 664 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 40/76 (52%), Positives = 54/76 (71%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 +MLI+A+ +EE RV +V G R+ + D ES +Q + NIY K+TR+EPSL+AAFVDYG Sbjct: 4 KMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVDYGG 63 Query: 63 ERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 64 NRHGFLAFAEIHPDYY 79 >UniRef50_C6ADR1 Ribonuclease E n=5 Tax=Rhizobiales RepID=C6ADR1_BARGA Length = 876 Score = 355 bits (911), Expect = 5e-96, Method: Compositional matrix adjust. Identities = 189/427 (44%), Positives = 269/427 (62%), Gaps = 7/427 (1%) Query: 75 REYFPANYSAHGRP-NIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 RE P GR I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN Sbjct: 169 REELPIYQRKQGRQYKIQEVIKRRQILLVQVIKEERGNKGAALTTYLSLAGRYSVLMPNT 228 Query: 134 PRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWE 192 R GGISR+I DR LKE + L +P+GMG+I+RTAG ++ ++ D + ++ W+ Sbjct: 229 ARGGGISRKITNVQDRKRLKEIVKELAVPKGMGVILRTAGANRTKAEIKRDYEYLMRLWD 288 Query: 193 AIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDF 252 I+ AP L+H+ESN+I R+ RD ++I EIL+ + A+ + L P Sbjct: 289 TIRTLTLESTAPCLVHEESNLIKRSIRDLYNKNISEILVSGDQGYREAKDFMRML-MPSH 347 Query: 253 SSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRG 312 + ++ Y P+F+ IE Q++ Q +V L SGG +VI+ TEAL AID+NS R+T+ Sbjct: 348 AKVVQPYRDPTPIFARNNIEIQLDKMLQPQVSLKSGGYLVINQTEALVAIDVNSGRSTKE 407 Query: 313 GDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRA 372 +E+TA TNLEAA+E+ARQLRLRDL GLIVIDFIDM R+ + VE +L++ ++ DRA Sbjct: 408 FSVEKTALQTNLEAAEEVARQLRLRDLAGLIVIDFIDMLEERNVKLVEKKLKDCLKNDRA 467 Query: 373 RIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEAL 432 RIQ+ HIS FGLLEMSRQR+ S+ ES+ CP C+GTG +R S++L ++R IEE L Sbjct: 468 RIQVGHISHFGLLEMSRQRIRISVLESTTQPCPHCAGTGNIRSESSIALHVMRSIEEYLL 527 Query: 433 KENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKG 492 + + PV A Y+LN KR+ + +ETR + I +D + T H L + KG Sbjct: 528 HNSQYNIIVRTPVATALYVLNHKRNILVNLETRFK-LNISIEADDSIGTQH---LVISKG 583 Query: 493 EETPTLS 499 ++S Sbjct: 584 SIAESIS 590 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 40/76 (52%), Positives = 54/76 (71%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 +MLI+A+ EE RV +V G ++ +LD ES +Q K NIY +ITR+EPSL+AAFV+YG Sbjct: 4 KMLIDASHPEETRVVVVHGNKIEELDFESEHRKQLKGNIYLARITRVEPSLQAAFVEYGG 63 Query: 63 ERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 64 NRHGFLTFSEIHPDYY 79 >UniRef50_Q2IVP9 RNAse E n=3 Tax=Bradyrhizobiaceae RepID=Q2IVP9_RHOP2 Length = 1060 Score = 352 bits (904), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 194/430 (45%), Positives = 271/430 (63%), Gaps = 7/430 (1%) Query: 90 IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDDR 148 I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I DR Sbjct: 334 IQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARGGGISRKITSAQDR 393 Query: 149 TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH 208 + LKE + L++PEGMG+I+RTAG ++ ++ D + ++ WE ++ AP L++ Sbjct: 394 SRLKEVVQDLDVPEGMGIILRTAGASRTKPEIKRDFEYLIRMWETVRDVTLKSQAPTLVY 453 Query: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSH 268 +E ++I R+ RD ++I EI + + AR + L P +KLY PLFS Sbjct: 454 EEGSLIKRSLRDLYNKEIDEIQVAGEAGYQEARDFMHML-MPSNVRAVKLYRDGQPLFSR 512 Query: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328 +ESQ+++ F V+L SGG IVI+ TEAL +ID+NS R+TR IE+TA TNLEA++ Sbjct: 513 MGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRSTREHHIEDTALKTNLEASE 572 Query: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388 E+ARQLRLRDL GLIVIDFIDM R+ RAVE +L + +RQDRARIQ+ IS FGLLEMS Sbjct: 573 EVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARIQVGRISHFGLLEMS 632 Query: 389 RQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIA 448 RQR+ S+ ESS CP C G+G VR S++L +LR +EE +K T + +A Sbjct: 633 RQRIRASVLESSTEPCPHCGGSGHVRSVSSVALQLLRGLEEILMKGATHNLIVRTRADVA 692 Query: 449 SYLLNEKRSAVNAIETRQDGVRCVI-VPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHE 507 Y+LN+KR + +ET G R + V +D T + + +GE+ TL L Sbjct: 693 LYVLNQKRGHLRDLET---GFRVTLSVVSDPTVTGQQSFV-IDRGEQVHTLESAKALLAA 748 Query: 508 EAMALPSEEE 517 + A P + E Sbjct: 749 QVAAYPVQAE 758 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 38/77 (49%), Positives = 53/77 (68%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+AT EE RV +V G R+ + D E+ +Q + NIY K+TR+EPSL+AAF++YG Sbjct: 3 NKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIEYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFSEIHPDYY 79 >UniRef50_A8IFL2 Ribonuclease E and G n=6 Tax=Rhizobiales RepID=A8IFL2_AZOC5 Length = 1093 Score = 352 bits (904), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 189/405 (46%), Positives = 265/405 (65%), Gaps = 5/405 (1%) Query: 90 IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-DR 148 I++V+R Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I DR Sbjct: 380 IQEVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNAVDR 439 Query: 149 TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH 208 LKE + LE+PEGMG+I+RTAG ++ ++ D + L+ WE +++ + AP L++ Sbjct: 440 KRLKEVVQELEVPEGMGIILRTAGANRTKVEIKRDFEYLLRLWETVRELTLTSSAPNLVY 499 Query: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSH 268 +E ++I RA RD ++I EI + + + AR + L P + + Y P+F+ Sbjct: 500 EEGSLIKRAIRDLYSKEIDEIHVAGEEGFQEARDFMRML-MPSHAKNVIAYREPQPIFAK 558 Query: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328 Y +E Q+++ F V+L SGG IVI+ TEAL +ID+NS RATR IE+TA TN+EAA+ Sbjct: 559 YGVEHQLDAMFSPVVQLKSGGYIVINPTEALVSIDVNSGRATREHHIEDTALKTNMEAAE 618 Query: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388 EIARQLRLRDL GLIVIDFIDM R+ R+VE +L++ ++ DRARIQ+ IS FGL+EMS Sbjct: 619 EIARQLRLRDLAGLIVIDFIDMEEKRNNRSVERKLKDCLKNDRARIQVGRISHFGLMEMS 678 Query: 389 RQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIA 448 RQR+ + ESS VCP C GTG VR S++L +LR +EE+ L+ + + A +A Sbjct: 679 RQRIRTGVLESSIEVCPVCGGTGHVRSAASVALQLLRALEEQLLRSASHNLIARTRGEVA 738 Query: 449 SYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGE 493 Y+LN KR+ + +E R +IV D+ T H L + KGE Sbjct: 739 LYVLNHKRAHLRELEDRFS--VTLIVQADESVTGHQPFL-IEKGE 780 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 39/77 (50%), Positives = 53/77 (68%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+AT EE RV +V G R+ + D ES +Q + NIY K+TR+EPSL+AAF++YG Sbjct: 3 NKMLIDATHPEETRVVVVRGNRVEEFDYESASRKQLRGNIYLAKVTRVEPSLQAAFIEYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFSEIHPDYY 79 >UniRef50_Q7CZH1 Ribonuclease E n=7 Tax=Alphaproteobacteria RepID=Q7CZH1_AGRT5 Length = 977 Score = 352 bits (903), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 189/423 (44%), Positives = 267/423 (63%), Gaps = 12/423 (2%) Query: 90 IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDDR 148 I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I + DR Sbjct: 269 IQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITQPTDR 328 Query: 149 TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH 208 LKE LE+P+GMG+I+RTAG ++ ++ D + ++ WE ++ + AP L++ Sbjct: 329 KRLKEIARDLEVPQGMGVILRTAGANRTRVEIKRDFEYLMRLWENVRTLTLNSTAPCLVY 388 Query: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSH 268 +E ++I R+ RD +DI EI++ + A+ + L P + ++ Y P+FS Sbjct: 389 EEGSLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKML-MPSHAKVVQPYRDIHPIFSR 447 Query: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328 IE+Q++ Q +V L SGG ++I+ TEAL AID+NS R+TR IEETA TNLEAA+ Sbjct: 448 SGIEAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHSIEETALTTNLEAAE 507 Query: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388 E+ARQLRLRDL GL+VIDFIDM R+ R+VE +L++ ++ DRARIQ+ IS FGLLEMS Sbjct: 508 EVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEMS 567 Query: 389 RQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIA 448 RQR+ S+ ES+ VC C GTG VR S++L +LR +EE L+ T + A Sbjct: 568 RQRIRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGVEEYLLRNTTHNITVRCTPETA 627 Query: 449 SYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGE--ETP----TLSYML 502 YLLN KR ++ E R GV +I + + H+ + R GE E P +L ML Sbjct: 628 LYLLNHKRGSIVDYEGRF-GVAIIIAADSSVGAQHFAIDR---GEAVENPVKIESLIQML 683 Query: 503 PKL 505 P Sbjct: 684 PSF 686 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 40/76 (52%), Positives = 54/76 (71%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 +MLI+A+ +EE RV +V G R+ + D ES +Q + NIY K+TR+EPSL+AAFVDYG Sbjct: 4 KMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYGG 63 Query: 63 ERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 64 NRHGFLAFAEIHPDYY 79 >UniRef50_B9JVK9 Ribonuclease E n=40 Tax=Rhizobiales RepID=B9JVK9_AGRVS Length = 1035 Score = 352 bits (902), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 185/405 (45%), Positives = 259/405 (63%), Gaps = 6/405 (1%) Query: 90 IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDR 148 I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I DR Sbjct: 295 IQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNPADR 354 Query: 149 TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH 208 LKE LE+P GMG+I+RTAG ++ ++ D + ++ WE ++ + AP L++ Sbjct: 355 KRLKEVARDLEVPLGMGVILRTAGANRTKVEVKRDFEYLMRLWENVRTLTLNSTAPCLVY 414 Query: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSH 268 +E ++I R+ RD +DI EI++ + A+ + L P + ++ Y P+FS Sbjct: 415 EEGSLIKRSIRDLYNKDISEIVVSGEEGYREAKDFMKML-MPSHAKVVQPYRDIHPIFSR 473 Query: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328 IE+Q++ Q +V L SGG I+I+ TEAL +ID+NS R+TR IE+TA TNLEAA+ Sbjct: 474 SGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREYSIEDTALQTNLEAAE 533 Query: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388 E+ARQLRLRDL GLIVIDFIDM R+ R+VE +L++ ++ DRARIQ+ IS FGLLEMS Sbjct: 534 EVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHFGLLEMS 593 Query: 389 RQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIA 448 RQR+ S+ ES+ VC CSGTG +R S++L +LR +EE LK T ++ A Sbjct: 594 RQRIRASVLESTTQVCQHCSGTGLIRSQSSVALHVLRGVEEYLLKSTTHDITVRTLPETA 653 Query: 449 SYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGE 493 YLLN KR ++ E R GV +I + H H + KGE Sbjct: 654 LYLLNHKRGSIVDYENRF-GVSIII--DSDASVGHQH-FAIDKGE 694 Score = 92.4 bits (228), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 40/76 (52%), Positives = 54/76 (71%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 +MLI+A+ +EE RV +V G R+ + D ES +Q + NIY K+TR+EPSL+AAFVDYG Sbjct: 4 KMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVDYGG 63 Query: 63 ERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 64 NRHGFLAFAEIHPDYY 79 >UniRef50_A0L8J1 Ribonuclease E n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8J1_MAGSM Length = 984 Score = 351 bits (901), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 188/445 (42%), Positives = 280/445 (62%), Gaps = 26/445 (5%) Query: 90 IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDDR 148 I+D+L++GQ +++Q+ KE RG KGA+LTT ISLAG Y VL+P N GGISR+I + R Sbjct: 171 IQDILKKGQLLLLQVVKEARGTKGASLTTNISLAGRYTVLLPENSGGGGISRKIMDNQAR 230 Query: 149 TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH 208 LK L +E+P+ + LI+RTAG+ ++ + D+S+ + W+ I++ E P LIH Sbjct: 231 KALKTMLTEMEIPQEVSLIIRTAGMERTKREIARDMSYLTRLWKTIQEKVEQHNTPTLIH 290 Query: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSH 268 +E ++I+R RD D+ EILID + + + L P + ++ Y IPLFS Sbjct: 291 EEGDLIIRTIRDLYSTDMEEILIDGGEAYRRGKDFMRLL-MPRYVKAVQPYKDRIPLFSR 349 Query: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328 YQ+E QIES +R + L +GG +VI+ TEAL +IDINS R+T+ ++E TAF TN++A D Sbjct: 350 YQVEHQIESMHERTISLKAGGYLVIEPTEALVSIDINSGRSTKEKNVENTAFKTNMQAVD 409 Query: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388 EIARQLRLRDLGGLIVIDFIDM +H VE RL+EA++ DRA+IQ+ IS+FGLLE+S Sbjct: 410 EIARQLRLRDLGGLIVIDFIDMEEKKHNLEVEKRLKEALKGDRAKIQLGKISQFGLLELS 469 Query: 389 RQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIA 448 RQR+ P+ ES+ VCPRC+G GT+R ES ++ + R IEE+ ++ P +A Sbjct: 470 RQRMKPAFNESNREVCPRCTGLGTIRSVESTAIRLFRCIEEDISSGRFSKLIYFAPADVA 529 Query: 449 SYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEE 508 +YL N KR + +E +++ + +I + +++TPH+ +E Sbjct: 530 NYLHNRKRFQMVQLE-QENNLELLIEIDPELQTPHFR---------------------KE 567 Query: 509 AMALPSEEEFAERKR--PEQPALAT 531 +A P ++E ++R PE+P L + Sbjct: 568 RIARPVQDEPVVKERPEPEEPTLVS 592 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 44/81 (54%), Positives = 59/81 (72%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 KRML++AT EE+RVA+V QRL DLDIE+ Q K NIY G++TR+EPSL+AAFVD+ Sbjct: 3 KRMLVDATHPEEVRVAIVQDQRLIDLDIETCTKAQIKGNIYLGRVTRVEPSLQAAFVDFN 62 Query: 62 AERHGFLPLKEIAREYFPANY 82 R GFL + +I +Y+P + Sbjct: 63 DGRQGFLSVNDINPKYYPPEF 83 >UniRef50_B6JHD4 Ribonuclease E (RNase E) n=19 Tax=Alphaproteobacteria RepID=B6JHD4_OLICO Length = 1123 Score = 351 bits (900), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 179/375 (47%), Positives = 246/375 (65%), Gaps = 2/375 (0%) Query: 90 IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDDR 148 I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I DR Sbjct: 423 IQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLMPNTARGGGISRKITSAQDR 482 Query: 149 TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH 208 LK+ + L++PEGMG+I+RTAG ++ ++ D + ++ WE ++ AP L++ Sbjct: 483 NRLKDVVQDLDVPEGMGIILRTAGASRTKPEIKRDFEYLIRMWETVRDLTLKSQAPTLVY 542 Query: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSH 268 +E ++I R+ RD ++I E+L+ + AR + L P +KLY PLFS Sbjct: 543 EEGSLIKRSLRDLYNKEIDEVLVSGEEGYHEARDFMKML-MPSNVRAVKLYRDNQPLFSR 601 Query: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328 +ESQ+++ F V L SGG +VI+ TEAL +ID+NS R+TR IE+TA TNLEAA+ Sbjct: 602 MGVESQLDAMFSPVVTLRSGGYLVINQTEALVSIDVNSGRSTREHHIEDTALKTNLEAAE 661 Query: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388 E+ARQLRLRDL GLIVIDFIDM R+ RAVE +L + +RQDRARIQ+ IS FGLLEMS Sbjct: 662 EVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQDRARIQVGRISHFGLLEMS 721 Query: 389 RQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIA 448 RQR+ S+ ESS CP C G G VR S++L +LR +EE+ +K T +A Sbjct: 722 RQRIRASVLESSTEPCPTCGGIGHVRSVASVALQLLRSLEEQLMKSGTHNYTVRTRTDVA 781 Query: 449 SYLLNEKRSAVNAIE 463 Y+LN KR + +E Sbjct: 782 LYVLNHKRGHLRDLE 796 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 39/77 (50%), Positives = 53/77 (68%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+AT EE RV +V G R+ + D ES +Q + NIY K+TR+EPSL+AAF++YG Sbjct: 109 NKMLIDATHPEETRVVVVRGNRVEEFDFESAQRKQLRGNIYLAKVTRVEPSLQAAFIEYG 168 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 169 GNRHGFLAFSEIHPDYY 185 >UniRef50_A8GXM7 Ribonuclease E n=15 Tax=cellular organisms RepID=A8GXM7_RICB8 Length = 693 Score = 348 bits (892), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 207/548 (37%), Positives = 297/548 (54%), Gaps = 84/548 (15%) Query: 2 KRMLINATQQEELRVALVDGQ--RLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 K+++I+A E RV L+ GQ + D++ ++ +Q K NIY K+TRIEPSL+A F++ Sbjct: 3 KKIIIDANFSNETRVVLL-GQSNNIEDIEFQTTRKQQNKGNIYLAKVTRIEPSLQAVFIE 61 Query: 60 YGAERHGFLPLKEIAREYF--PA---NYSAHGRPNI------------------KDVLRE 96 YG ++ GFLP EI Y+ PA N+ + P I D L + Sbjct: 62 YGMDKSGFLPFSEIHPNYYNLPASEKNFPINAFPEIVPPNIILDDEDEVRAATSYDPLID 121 Query: 97 GQEV--------------------------IVQIDKE----------------------- 107 G+E+ I+Q DKE Sbjct: 122 GEEIDLKAIEDLVESKFQSELNLEAADDIEIIQSDKEENIPQYKQYKVQDVIRKNQILLV 181 Query: 108 -----ERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALASLELP 161 ERGNK AA TT++SLAG Y VLMPN GISR+I GD+R LK L + Sbjct: 182 QVTKEERGNKCAAFTTYVSLAGKYCVLMPNKAAQNGISRKISNGDERKRLKNILNKVVNG 241 Query: 162 EG--MGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFR 219 + +I+RTAG G S L+ D S+ + W I+K+ PAP IH+E ++I + R Sbjct: 242 DKSPYSVIIRTAGRGCSTLDLKKDYSYLSRLWNKIRKSTVKFPAPCFIHEEDSIIRKTIR 301 Query: 220 DYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAF 279 D ++ E++I + E A + + L P +K+K + + P+F+ +Q+E Q+ + Sbjct: 302 DMCDHNVKEVIIYGQEAYEDAAKFMQDL-LPSEMTKLKEHKSKTPIFTKFQVEEQLIKLY 360 Query: 280 QREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDL 339 Q V LPSGG IVI+ TEAL +ID+NS R+T +IEETA TNLEAA EIARQ++LRDL Sbjct: 361 QPVVTLPSGGYIVINPTEALISIDVNSGRSTSEKNIEETALKTNLEAAKEIARQVKLRDL 420 Query: 340 GGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGES 399 GLIV+DFIDM ++++ +E +E + +DRARIQ +IS+FGLLE SRQRL S E+ Sbjct: 421 SGLIVVDFIDMDETKNRKIIERSFKEFLSRDRARIQTGNISQFGLLEFSRQRLRFSFLET 480 Query: 400 SHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAV 459 + +C C+G G VR +ES ++ ILR IE E ++ ++ V YLLN KR + Sbjct: 481 NSSICSHCNGKGVVRADESNAMLILRTIENEIFEDRIDIINVFANVSSVIYLLNNKRQEI 540 Query: 460 NAIETRQD 467 IE + + Sbjct: 541 KFIEEKYN 548 >UniRef50_Q1MQA2 Ribonucleases G and E n=2 Tax=Desulfovibrionaceae RepID=Q1MQA2_LAWIP Length = 666 Score = 348 bits (892), Expect = 9e-94, Method: Compositional matrix adjust. Identities = 198/472 (41%), Positives = 282/472 (59%), Gaps = 14/472 (2%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLI+ E++ VA+ +L++ IE H + + NIYKG I I+ +L+AAF++YG Sbjct: 177 KKMLISVIPGEQVEVAISSDGQLFEYFIEMNHHAKIRGNIYKGVINNIDANLQAAFINYG 236 Query: 62 AERHGFLPLKEIAREYF-----PANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL 116 ++GFL + E+ EY+ P + P I+ VL+ GQE++VQ+ KE GNKGA L Sbjct: 237 NTKNGFLQIDEVHPEYYLQPHEPTKLKKY--PPIQKVLKAGQEILVQVVKEPTGNKGAFL 294 Query: 117 TTFISLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGK 175 TT++SLAG +LVL P + G ISR++E ++ RT L+E + L+ G+G IVRT +G Sbjct: 295 TTWLSLAGRFLVLTPGQEQIG-ISRKVEDEEERTRLRELIKGLDPGSGLGAIVRTVSIGT 353 Query: 176 SAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPK 235 S LQ DLSF + W I+K A + +P LI++E + RA RDYL DI EI +D+P+ Sbjct: 354 SKTTLQKDLSFLKRVWREIRKKATTEKSPCLIYEEPGLATRAVRDYLADDITEIWVDDPE 413 Query: 236 VLELARQHIAALGRPDFSSKIKLY-TGEIPLFSHYQIESQIESAFQREVRLPSGGSIVID 294 + A Q + L P + + LY PL+ H+++ QI REV +PSGG +V D Sbjct: 414 TKQ-AIQEVTTLLFPRKTKLVHLYQNNNEPLWEHFKLNKQIIQVHSREVIMPSGGRLVFD 472 Query: 295 STEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVR 354 TEAL AIDINS R + E A+ TN+EAA IA+QLRLRD+GG IVIDFI+M Sbjct: 473 QTEALMAIDINSGRIAGKTNFESMAYRTNMEAAATIAQQLRLRDIGGQIVIDFIEMKEPA 532 Query: 355 HQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVR 414 H R VE L+ A++ DRAR + +S FGLL++ RQR+ S S CP C GTG R Sbjct: 533 HCRDVEKELQLAMKADRARHDVGKMSSFGLLQVVRQRIGSSAISISQETCPYCQGTGQRR 592 Query: 415 DNESLSLSILRLIEEEALKENTQEVHAIVPV---PIASYLLNEKRSAVNAIE 463 + E ++ LR I ++ + T H + + YLLN KR+ + A+E Sbjct: 593 NIEWQAIQTLREIHKKMQQTVTAGKHEYIHTLDQELGLYLLNNKRNRLIALE 644 >UniRef50_D2R4N9 Ribonuclease, Rne/Rng family n=2 Tax=Planctomycetaceae RepID=D2R4N9_9PLAN Length = 543 Score = 347 bits (891), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 206/499 (41%), Positives = 296/499 (59%), Gaps = 41/499 (8%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 MLIN +Q EE R+A+++ L +L IE + NIY+G+I +EPS++AAFVD+G Sbjct: 11 MLINVSQPEECRIAIIEDGLLEELYIERASQDNYVGNIYRGRIVNLEPSIQAAFVDFGVG 70 Query: 64 RHGFLPLKEIAREYF------PANYSAHGR------------------------------ 87 R+GFL + ++ +YF PA GR Sbjct: 71 RNGFLHISDVEPQYFRQGGYDPAEQIGGGRLADIDTGEDDDAPRPQQRRERRPPRGGRPR 130 Query: 88 --PNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145 P I+++ R G EV+VQ+ KE G KG L+T+IS+ G YLVLMP R G +SR+IE Sbjct: 131 VKPPIQEIFRRGDEVLVQVIKEGIGTKGPTLSTYISIPGRYLVLMPALGRVG-VSRKIED 189 Query: 146 DD-RTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAP 204 D+ R L++ L L P+G+G IVRTAG ++ + L D+++ L+ W+ I + + P Sbjct: 190 DELRRTLRDTLLELNPPKGLGFIVRTAGQDRTKKELSRDMAYLLRLWKVIVRRLKKTAGP 249 Query: 205 FLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIP 264 I++ES++I+R RD +I I ID+P+ E A++ + L P +++ Y G P Sbjct: 250 ATIYEESDMIIRTIRDIFTAEIDAIYIDHPEAFERAKEFLQ-LVMPRNVNRLHQYEGREP 308 Query: 265 LFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNL 324 LF Y++E +I +QR+V L GGSIVID TEAL AID+NS D +ETA+ N+ Sbjct: 309 LFHKYKVEQEIVQIYQRKVPLRGGGSIVIDQTEALVAIDVNSGNFRAEDDADETAYQLNI 368 Query: 325 EAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGL 384 AA EIARQLRLRDLGG+IV DFIDM RH+R VE LR+A+R+DRAR +I S FGL Sbjct: 369 SAAKEIARQLRLRDLGGVIVNDFIDMRKERHRRGVERALRDAMRRDRARTKILRTSPFGL 428 Query: 385 LEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVP 444 +EM+RQR+ PSL S + CP CSG G V+ ES+++ ++R++ + + N V V Sbjct: 429 IEMTRQRIRPSLKRSVYGDCPCCSGRGVVKTAESMAIEVVRMLMLASQQPNVSRVTVRVN 488 Query: 445 VPIASYLLNEKRSAVNAIE 463 +ASYL N+KR + +E Sbjct: 489 SEVASYLNNKKRREIMKLE 507 >UniRef50_B8IYX2 Ribonuclease, Rne/Rng family n=10 Tax=Desulfovibrionales RepID=B8IYX2_DESDA Length = 1076 Score = 345 bits (885), Expect = 6e-93, Method: Compositional matrix adjust. Identities = 198/479 (41%), Positives = 291/479 (60%), Gaps = 15/479 (3%) Query: 2 KRMLINATQQEELRVALV-DGQRL-YDLDIESPGHEQK-KANIYKGKITRIEPSLEAAFV 58 +RM I+ E++ VAL DGQ L Y LD+ H++K K NIYKG I I+ +L+AAFV Sbjct: 599 RRMFISVLPGEQVEVALTEDGQLLEYYLDML---HQRKIKGNIYKGVIHNIDTNLQAAFV 655 Query: 59 DYGAERHGFLPLKEIAREYFPANYS-AHGR--PNIKDVLREGQEVIVQIDKEERGNKGAA 115 YGA ++GFL + EI EY+ ++ A G+ P I+ VL+ GQEV+VQ+ KE G+KGA Sbjct: 656 SYGAGKNGFLQIDEIHPEYWLTHHEPAKGKKFPPIQKVLKAGQEVLVQVVKEPTGSKGAF 715 Query: 116 LTTFISLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVG 174 LTT++SLAG +LVL P + G +SR+++ ++ R+ L+E + ++ +G+G+IVRT G Sbjct: 716 LTTWLSLAGRFLVLTPGQEQIG-VSRKVDDEEERSRLREMMNGIDPGQGLGVIVRTVSAG 774 Query: 175 KSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNP 234 + L+ DL + + W I+K A AP LI+QE + RA RDYL D+GEI +DN Sbjct: 775 TTKTTLKNDLQYLKRVWRDIRKKATEVTAPSLIYQEPGLSERAVRDYLTDDVGEIWVDNE 834 Query: 235 KVLELARQHIAALGRPDFSSKIKLYTG-EIPLFSHYQIESQIESAFQREVRLPSGGSIVI 293 V + R+ + L P S ++L++ ++ + + Q++ + REV LPSGG +V Sbjct: 835 DVAQSIRETVNLL-FPRKSDLVRLHSDVRTSMWERFSLRRQLDQIYTREVLLPSGGRLVF 893 Query: 294 DSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPV 353 D TEAL A+DINS + + G+ E A TN+EAA+ IAR L+LRD+GG +VIDFI+M Sbjct: 894 DQTEALMAVDINSGKISGKGNFEAMAHKTNMEAAETIARHLKLRDIGGQVVIDFIEMRDK 953 Query: 354 RHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 +H VE LR A++ DRAR + +S FGLLE+ RQR S + CP C GTG Sbjct: 954 KHIIEVEKTLRSAMKNDRARHDVGRMSAFGLLELVRQRTGSSALAITMEPCPACGGTGQR 1013 Query: 414 RDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCV 472 R+ E +L LR + E+ ++ +A YLLN KR ++ +E QD +C+ Sbjct: 1014 RNLEWQALQALRELRRMLRAESKEKCVYGTSAELALYLLNHKRDSLREME--QDYGKCL 1070 >UniRef50_A3VT88 Ribonuclease E n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VT88_9PROT Length = 1038 Score = 343 bits (881), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 178/410 (43%), Positives = 252/410 (61%), Gaps = 3/410 (0%) Query: 90 IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDR 148 I++V++ Q ++VQ+ KEERGNKGAALTTF+SLAG Y VLMPNN R GG+SR+I DR Sbjct: 386 IQEVIKRRQVMLVQVVKEERGNKGAALTTFLSLAGRYGVLMPNNARGGGVSRKISNQSDR 445 Query: 149 TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH 208 L++A+A L +P G GLI+RTAG ++ ++ D + + W+ I+ AP LI+ Sbjct: 446 RRLRKAMAELNVPAGQGLIIRTAGAKRTKAEIKRDYDYLARLWDTIRSQTLQSVAPCLIY 505 Query: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSH 268 +E+++I RA RD +D EIL++ A+ + L P + ++ Y + PLF H Sbjct: 506 EEASLIKRAIRDLYDKDTAEILVEGEDGYREAKDFMKML-MPSHAKNVQPYREQEPLFLH 564 Query: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328 Y +E Q++ +Q V L SGG +VI TEAL +ID+NS ++T+ ++E TA TN EAA Sbjct: 565 YGVERQLDEMYQPVVTLKSGGYLVIQQTEALISIDVNSGKSTKERNVEATALKTNSEAAV 624 Query: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388 E+ARQ RLRDL GLIV+DFIDM R+ R VE + +EA++ DRARIQ+ IS FGLLEMS Sbjct: 625 EVARQCRLRDLAGLIVVDFIDMDENRNNRTVEKKFKEALKSDRARIQVGSISTFGLLEMS 684 Query: 389 RQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIA 448 RQR + + + CP C G G VR E +L ILR IEE+A + V A + ++ Sbjct: 685 RQRRRSGIVDGTTRTCPTCDGAGAVRSVEMAALRILRAIEEKAASDKAASVTASAALDVS 744 Query: 449 SYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTL 498 Y+LN+KR +N IE G R + + Y + + +E TL Sbjct: 745 LYILNQKRDWLNQIEATY-GCRITVEGDSDKNGDQYELTVSGRLKEEETL 793 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 35/77 (45%), Positives = 52/77 (67%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+M+I+A EE RVA++ ++ D D ES + + NIY ++TR+EPSL+AAF++YG Sbjct: 3 KKMMIDARHPEETRVAVLSNGKVEDFDFESLSRKPLRGNIYLARVTRVEPSLQAAFIEYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFGEIHSDYY 79 >UniRef50_Q0G6Z6 Ribonuclease E and G n=2 Tax=Rhizobiales RepID=Q0G6Z6_9RHIZ Length = 1013 Score = 337 bits (865), Expect = 1e-90, Method: Compositional matrix adjust. Identities = 172/385 (44%), Positives = 249/385 (64%), Gaps = 3/385 (0%) Query: 90 IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-DR 148 I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I DR Sbjct: 298 IQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNQADR 357 Query: 149 TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH 208 L++ + L++P GMG+I+RTAG ++ ++ D + ++ WE+++ AP L++ Sbjct: 358 KRLRDVVKELDVPRGMGIILRTAGANRTKAEVKRDYEYLMRLWESVRTLTLQSIAPSLVY 417 Query: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSH 268 +E ++I R+ RD +DI +IL+ A+ + L P + ++ Y P+F+ Sbjct: 418 EEGSLIKRSIRDLFNKDIDQILVSGEAGYREAKDFMRML-MPSQAKAVQPYRDATPIFTR 476 Query: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328 IE+Q++ Q V L SGG I+I+ TEAL AID+NS R+TR IE TA+ TNLEAA+ Sbjct: 477 QGIEAQLDKMLQPHVTLKSGGYIIINQTEALVAIDVNSGRSTREMSIENTAYQTNLEAAE 536 Query: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388 EIARQLRLRDL GLIV+DFIDM R+ R VE ++++ ++ DRARIQ+ IS FGL+EMS Sbjct: 537 EIARQLRLRDLAGLIVVDFIDMDEKRNNRNVEKKMKDCLKNDRARIQVGKISHFGLMEMS 596 Query: 389 RQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIA 448 RQR+ S+ ES+ CP C G G VR SL+L +R IE+ K +++ VP A Sbjct: 597 RQRIRASVLESTMRPCPVCEGAGMVRATSSLALHAIRHIEDYLQKNKGRDLIVKVPTETA 656 Query: 449 SYLLNEKRSAVNAIETRQDGVRCVI 473 ++LNEKR ++ +E D +R I Sbjct: 657 LFILNEKRHHIDELEQNHD-LRIFI 680 Score = 72.8 bits (177), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 38/76 (50%), Positives = 53/76 (69%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 +MLI+++ EE RV +V G R+ + D ES +Q K NIY K+TR+EPSL+AAF++YG Sbjct: 4 KMLIDSSHPEETRVVVVRGNRVEEFDFESEHKKQLKGNIYLAKVTRVEPSLQAAFIEYGG 63 Query: 63 ERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 64 GRHGFLAFSEIHPDYY 79 >UniRef50_Q2G5W8 Ribonuclease E n=8 Tax=cellular organisms RepID=Q2G5W8_NOVAD Length = 935 Score = 335 bits (860), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 182/401 (45%), Positives = 249/401 (62%), Gaps = 3/401 (0%) Query: 87 RPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIE-G 145 R I+DV++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN+ GGISR+I Sbjct: 206 RYKIQDVIQRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNSSHGGGISRKINSA 265 Query: 146 DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPF 205 DR LK ++ LELP M IVRTAG+ ++ ++ D + + W+ I++ AP Sbjct: 266 SDRKRLKTIISELELPRSMSCIVRTAGLQRTKPEIKRDFDYLARLWDEIRERTMKSVAPA 325 Query: 206 LIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPL 265 LIH +S++I RA RD +DI E++++ A+ + L P + ++K Y +PL Sbjct: 326 LIHSDSDLIKRAIRDIYNRDIEEVVVEGEHGYRAAKDFMKLL-MPSHAKRVKAYADPVPL 384 Query: 266 FSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLE 325 F Y E Q+ + + V+L SGG +VI+ TEAL +IDINS R+T+ IE+TA TNLE Sbjct: 385 FQRYGAEDQLTAMYDPVVQLKSGGYLVINPTEALVSIDINSGRSTKEHGIEQTAVATNLE 444 Query: 326 AADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLL 385 AA EIARQLRLRD+ GL+VIDFIDM + R VE +++A++ DRARIQ+ IS FGL+ Sbjct: 445 AAREIARQLRLRDMAGLVVIDFIDMEYGSNIRKVEKAMKDALKNDRARIQVGRISGFGLM 504 Query: 386 EMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPV 445 EMSRQRL + E++ CP C G+G VR S LS LRLIE+EA K V Sbjct: 505 EMSRQRLRTGVLEATTRACPHCDGSGLVRTASSAGLSALRLIEDEAAKGKGNVVTLYASQ 564 Query: 446 PIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHV 486 A Y+LN KR+ + IE R GV ++P + E V Sbjct: 565 EAAVYVLNAKRADLAEIEERY-GVTVEVIPEGENEGAKMRV 604 Score = 98.2 bits (243), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 43/76 (56%), Positives = 55/76 (72%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 RMLI+A QEE RVA++ G R+ + D ES H+Q K NIY K+TR+EPSL+AAFVD+G Sbjct: 4 RMLIDARHQEETRVAVLKGNRIEEFDFESADHKQIKGNIYLAKVTRVEPSLQAAFVDFGG 63 Query: 63 ERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 64 NRHGFLAFSEIHPDYY 79 >UniRef50_B4RCR6 Ribonuclease, Rne/Rng family protein n=4 Tax=Alphaproteobacteria RepID=B4RCR6_PHEZH Length = 896 Score = 334 bits (856), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 179/396 (45%), Positives = 249/396 (62%), Gaps = 3/396 (0%) Query: 89 NIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIE-GDD 147 I++V+R Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I D Sbjct: 144 KIQEVIRRRQIMLVQVVKEERGNKGAALTTYLSLAGRYGVLMPNTARGGGISRKITTATD 203 Query: 148 RTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLI 207 R LK + SL++P GMGLIVRTAG ++ ++ D + L+ WE I++ AP LI Sbjct: 204 RKRLKSIVQSLDVPAGMGLIVRTAGAKRTKAEIKRDYDYLLRLWENIRETTLHSIAPALI 263 Query: 208 HQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFS 267 ++E +++ RA RD +D+ + ++ + AR + L P + K++LY PL+ Sbjct: 264 YEEEDLVKRAIRDLYDKDVDNVWVEGEAGFKEARDFMRML-MPSQAKKVQLYREPTPLYV 322 Query: 268 HYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAA 327 +++E + + V L SGG +VI+ TEAL AID+NS RATR +IE TA TN+EAA Sbjct: 323 KHKVEDHLSQIYSPVVPLRSGGYLVINQTEALVAIDVNSGRATRERNIEATALKTNMEAA 382 Query: 328 DEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEM 387 +E ARQLRLRDL GLIVIDFIDM ++ RAVE +L++ ++ DRAR+Q+ IS FGL+E+ Sbjct: 383 EEAARQLRLRDLAGLIVIDFIDMDEAKNNRAVEKKLKDCLKDDRARVQMGKISPFGLMEI 442 Query: 388 SRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPI 447 SRQR + E + HVC C GTG VR ES +L+ LR +E EALK E VP + Sbjct: 443 SRQRRRTGVLEGTTHVCEHCGGTGRVRSVESSALAALRALEIEALK-GGGEATLTVPRAV 501 Query: 448 ASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPH 483 Y+LNEKR + + V++ +D H Sbjct: 502 GLYILNEKRGHLARLHHAFGLFVTVLIDDDMAHAEH 537 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 41/77 (53%), Positives = 53/77 (68%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K MLI+A EE RV +VDG R+ + D ES +Q + NIY K+TR+EPSL+AAFV+YG Sbjct: 3 KTMLIDAAHAEETRVVVVDGNRVEEFDFESQNRKQLRGNIYLAKVTRVEPSLQAAFVEYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFNEIHPDYY 79 >UniRef50_B0SXB4 Ribonuclease, Rne/Rng family n=2 Tax=Alphaproteobacteria RepID=B0SXB4_CAUSK Length = 905 Score = 329 bits (843), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 183/406 (45%), Positives = 253/406 (62%), Gaps = 4/406 (0%) Query: 89 NIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DD 147 I++V+R Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I D Sbjct: 136 KIQEVIRRRQIMLVQVVKEERGNKGAALTTYLSLAGRYGVLMPNTARGGGISRKITTITD 195 Query: 148 RTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLI 207 R LK + L++P+GMGLIVRTAG ++ ++ D + L+ WE I+ AP LI Sbjct: 196 RKRLKSVVQGLDVPQGMGLIVRTAGAKRTKAEIKRDYEYLLRLWENIRDNTLHSIAPALI 255 Query: 208 HQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFS 267 ++E +++ RA RD +D+ I ++ + AR + L P + K+ Y PLF Sbjct: 256 YEEEDLVKRAIRDMYDKDLEGIWVEGEAGYKEARDFMRML-MPSQAKKVFPYREAAPLFV 314 Query: 268 HYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAA 327 ++IE + + V L SGG +VI+ TEAL AID+NS +ATR +IE TA TN+EAA Sbjct: 315 KHKIEDHLAQIYSPVVPLRSGGYLVINQTEALVAIDVNSGKATRERNIEATALKTNMEAA 374 Query: 328 DEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEM 387 +E ARQLRLRDL GLIVIDFIDM ++ RAVE L+++++ DRARIQ+ IS FGL+E+ Sbjct: 375 EEAARQLRLRDLAGLIVIDFIDMDEGKNNRAVEKILKDSLKDDRARIQMGKISGFGLMEI 434 Query: 388 SRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPI 447 SRQR + E + HVC C GTG VR ES +L+ LR +E EALK V V P+ Sbjct: 435 SRQRRRTGVLEGTTHVCEHCDGTGRVRSVESSALAALRAVEVEALK-GGGAVTLKVSRPV 493 Query: 448 ASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGE 493 Y+LNEKR+ + ++ V+V +D + + + R GE Sbjct: 494 GIYILNEKRAYLLRLQQTHALFVTVLV-DDSLHQAEHDIDRTELGE 538 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 40/77 (51%), Positives = 54/77 (70%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLI+A EE RV +VDG R+ + D ES +Q + NIY K+TR+EPSL+AAF++YG Sbjct: 3 KKMLIDAAHAEETRVVVVDGSRVEEFDFESQTRKQLRGNIYLAKVTRVEPSLQAAFIEYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFNEIHPDYY 79 >UniRef50_B8DIL9 Ribonuclease, Rne/Rng family n=3 Tax=Desulfovibrio RepID=B8DIL9_DESVM Length = 491 Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 195/484 (40%), Positives = 284/484 (58%), Gaps = 14/484 (2%) Query: 3 RMLINATQQEELRVALVDG----QRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFV 58 RM I+ E++ VAL + ++ + +E + K NIY+G I ++ +L+AAFV Sbjct: 9 RMFISVLPGEQVEVALAEEGAKENQVKEYYVEMVHQAKTKGNIYRGIINNVDTNLQAAFV 68 Query: 59 DYGAERHGFLPLKEIAREYFPANYSA-HGR--PNIKDVLREGQEVIVQIDKEERGNKGAA 115 +YGA+++GFL + E+ EY+ + A G+ P ++ VL+ GQEV+VQ+ KE G+KGA Sbjct: 69 NYGADKNGFLQIDEVHPEYYNTPHDATKGKKYPLMQKVLKAGQEVLVQVVKEPTGSKGAF 128 Query: 116 LTTFISLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVG 174 LTT++S+ G +LVL P + G +SR++E D+ R L+E L L G+G+IVRT G Sbjct: 129 LTTYLSMPGRFLVLTPGREQIG-VSRKVEDDEERGRLREMLEGLNPGPGLGVIVRTVSAG 187 Query: 175 KSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNP 234 S LQ DL F + W+ I+K AP LI++E ++ RA RDYL D+ E+ +D+ Sbjct: 188 TSKTTLQRDLQFLKRLWKDIRKKGTEESAPCLIYKEPDLASRAVRDYLSDDVAEVWVDDE 247 Query: 235 KVLELARQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVI 293 L ++ ++L P S +K+Y + L+ + I+ Q+E + REV LPSGG +V Sbjct: 248 HTATLIEEY-SSLLFPRKGSLVKVYKDQTRTLWERFGIQRQLEQIYSREVTLPSGGRLVF 306 Query: 294 DSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPV 353 D TEAL AIDINS + + + E A TN+EAA+ IA+QL+LRD+GG +VIDFI+M Sbjct: 307 DQTEALMAIDINSGKISGKTNFESMALRTNMEAAETIAQQLKLRDIGGQVVIDFIEMRDR 366 Query: 354 RHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 H R VE LR A++ DRAR + +SRFGLL++ RQR S + CP C G+G Sbjct: 367 NHWREVEKILRNAMKNDRARHDVGKMSRFGLLQVVRQRTGSSALSITMEACPCCKGSGLR 426 Query: 414 RDNESLSLSILRLIEEE--ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRC 471 R+ E SL LR I + AL T +A +LLN KR + +E RQ GV Sbjct: 427 RNMEWQSLQALREIHRQLRALPHGTVTFLFETGAEVAMHLLNHKRERLLDLE-RQFGVHL 485 Query: 472 VIVP 475 I P Sbjct: 486 DIRP 489 >UniRef50_D1N7U6 Ribonuclease, Rne/Rng family n=2 Tax=Lentisphaerae RepID=D1N7U6_9BACT Length = 544 Score = 319 bits (818), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 185/473 (39%), Positives = 264/473 (55%), Gaps = 55/473 (11%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K++++N + E R AL++ RL + IE G+E K +IY GKI +EPSL+AAFVD G Sbjct: 6 KQIILNCEKLER-RFALLNNGRLEEYQIERDGNEPKVGDIYLGKIINLEPSLQAAFVDIG 64 Query: 62 AERHGFLPLKEIAREYFPANYSAHGR------------------------------PNIK 91 AE++ FL E+ P GR PN K Sbjct: 65 AEKNAFLHYHEM----LPGCDELLGRRDSDDDDDEKTVSGNEQPIQAKRQKRQEAKPNSK 120 Query: 92 ------------------DVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 ++ + G E++VQ+ K KGA +TT IS+AG YLVLMP + Sbjct: 121 VNQEALRRKKKLTVADIPNIFKPGMEILVQVVKSPISTKGARVTTDISIAGRYLVLMPYS 180 Query: 134 PRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWE 192 G +S RIEG +R L++ LA+LELPEGMGLI RT G G+ + + DL L +W Sbjct: 181 EHIG-LSTRIEGGQERDRLRKILAALELPEGMGLICRTVGEGRRSTFFKRDLDLLLDNWR 239 Query: 193 AIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDF 252 I+K ++R AP L++ E N++ R RD++ ++ I++D+ + + G Sbjct: 240 KIEKGMDTRNAPALLYTEPNLVERTIRDFMTEEFQGIVVDDADASCQIIETLNRFGGRKM 299 Query: 253 SSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRG 312 + K+ LY P+F Y+I Q+ FQREVRLP GG+IV+D TEAL AID+NS R +G Sbjct: 300 AEKVTLYNSGKPVFEAYRINDQLREVFQREVRLPGGGAIVVDETEALIAIDVNSGRGRKG 359 Query: 313 GDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRA 372 D E TNLEAA+EIARQLRLR++GGL+V+DFIDM R + V ++ V+ DRA Sbjct: 360 ADQPEFILKTNLEAAEEIARQLRLRNIGGLVVLDFIDMRSARDREEVYRTMKRLVKDDRA 419 Query: 373 RIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILR 425 + ++ +SR GL+EM+RQR S+ + CP C G+G V+ S+S+ I R Sbjct: 420 KTKVLPLSRLGLMEMTRQREHESIKDQVFMPCPYCHGSGRVKSVVSMSVEIQR 472 >UniRef50_B3DX65 Ribonuclease G and E n=7 Tax=Verrucomicrobia RepID=B3DX65_METI4 Length = 554 Score = 317 bits (813), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 188/470 (40%), Positives = 267/470 (56%), Gaps = 16/470 (3%) Query: 13 ELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKE 72 E RVAL+D L + IE ++ NIYKG++ I+ L+A FVD G ++ FL + Sbjct: 60 ERRVALLDEGLLEEFAIERGSQKEIAQNIYKGRVNNIDQGLKALFVDIGIGKNAFLHFWD 119 Query: 73 IAREYFPANYSAHGRPNIK------------DVLREGQEVIVQIDKEERGNKGAALTTFI 120 A R K ++ G EV+VQ+ K G KG +TT I Sbjct: 120 AIPAALDAGIELFERKGTKSKARLPRAEDIPNIYPPGSEVVVQVTKGPIGTKGPRVTTNI 179 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 +LAG YLVLMP N + G ISR+IE +R L++ L L +PEGMG+I+RT G G+ + Sbjct: 180 TLAGRYLVLMPYNEQFG-ISRKIEDPKERARLRKILNELRIPEGMGVIIRTVGEGQKSRY 238 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 DL+ L+ W AI++ PAP L++ E ++I R RD+L D+ +I ID+ ++ Sbjct: 239 FVRDLAILLQKWNAIEQKMRECPAPVLLYMEPDLIERTVRDFLTDDVEKIYIDDENEVKR 298 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + +A + + KI Y IPLF IE QI++AF R+V LPSGG I+ID TEAL Sbjct: 299 IKDLVAQISKRS-QKKIIYYNEPIPLFEKLNIERQIDTAFMRKVELPSGGYIIIDETEAL 357 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 AID+N+ +A G D + TN+EAA EI+RQLRLR++GGL+VIDFIDM R Q V Sbjct: 358 VAIDVNTGKAKVGKDQDNMILKTNIEAAAEISRQLRLRNIGGLVVIDFIDMKSRRDQHLV 417 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 +L+E VR+DRA+I + IS FGL+EM+RQR+ S+ S + CP C G G V+ E++ Sbjct: 418 FEKLKECVRKDRAKINLLPISSFGLVEMTRQRVQESIWHSLYVPCPHCHGRGMVKSPETM 477 Query: 420 SLSILRLIEEEA-LKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDG 468 S+ I R I L +E+ I+ + L +E + +E R G Sbjct: 478 SIEIQRAINRVIRLHPEVKELRVILNGFVLDRLKSEDEELLVDLERRMQG 527 >UniRef50_Q0C4E1 Ribonuclease, Rne/Rng family n=2 Tax=Hyphomonadaceae RepID=Q0C4E1_HYPNA Length = 909 Score = 315 bits (808), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 175/401 (43%), Positives = 251/401 (62%), Gaps = 3/401 (0%) Query: 87 RPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EG 145 R I++V+R Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN PR GGISR+I Sbjct: 178 RYKIQEVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTPRGGGISRKIVNS 237 Query: 146 DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPF 205 DR LK ++ L++PEG GLIVRTAG ++ ++ D + K WE I + S AP Sbjct: 238 ADRKRLKSIVSELDVPEGQGLIVRTAGAKRTKIEIKRDYDYLSKLWEQIVEKTLSSEAPA 297 Query: 206 LIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPL 265 LI+ E ++ RA RD ++I E+ + + A+ +A + P + K++ + E PL Sbjct: 298 LINAEGGLVHRAMRDMFDKEIEEVWVQGDEAYREAKD-LAKIIMPSQAKKVQQWREEDPL 356 Query: 266 FSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLE 325 + +E+Q++S + V+L SGG +VI+ TEAL AID+NS ++TR +IE+TA TNLE Sbjct: 357 YVAEAVENQLDSIYSPVVQLKSGGYLVINQTEALVAIDVNSGKSTRERNIEQTAVRTNLE 416 Query: 326 AADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLL 385 AA+E RQ+RLRDL GLIVIDFIDM ++ RAVE RL+E ++ DRAR+Q IS+FGL+ Sbjct: 417 AAEEACRQMRLRDLAGLIVIDFIDMEENKNNRAVEKRLKECLKVDRARVQHGRISQFGLM 476 Query: 386 EMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPV 445 E+SRQR + +++ C C+GTG R S +L ++R IE A + + P Sbjct: 477 EISRQRRRQGVLQATSDPCSACNGTGRRRSIPSAALQLIRAIEARAATGGLKGIGVKAPT 536 Query: 446 PIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHV 486 +A Y+LN KR A+ IE R G I ++ M + + Sbjct: 537 DVALYILNNKREALIEIE-RLAGFAISIHSSEDMLPGDFQI 576 Score = 91.7 bits (226), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 40/75 (53%), Positives = 54/75 (72%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 MLI+A EE RVA+V+ ++ D D E+ G+EQ + NIY K+TR+EPSL+AAFV+YG Sbjct: 5 MLIDAAHPEETRVAIVNNGQVDDFDFEATGNEQLRGNIYLAKVTRVEPSLQAAFVEYGGN 64 Query: 64 RHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 65 RHGFLAFSEIHPDYY 79 >UniRef50_B5JNK0 Ribonuclease, Rne/Rng family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNK0_9BACT Length = 582 Score = 310 bits (793), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 181/440 (41%), Positives = 266/440 (60%), Gaps = 20/440 (4%) Query: 3 RMLINATQQEELRVA-LVDGQRLYDLDIESPGHEQK-KANIYKGKITRIEPSLEAAFVDY 60 R LI ++ E+RV LVDG L DIE Q+ I+KG+I ++P L+AAFVD Sbjct: 68 RELIINSEPLEIRVGQLVDGI-LDKFDIERRHSAQRIVGGIFKGRIKNLDPGLKAAFVDI 126 Query: 61 GAERHGFLPLKEI-------AREYFPANYSAHGRPNIKDVLRE-------GQEVIVQIDK 106 G ++ FL +I + E N S G+ K L+E G E+++QI K Sbjct: 127 GMPKNAFLHYWDIQPQEADSSIEVVRVNSSRKGKKQAKIPLKEIPNHYPIGTEIVIQITK 186 Query: 107 EERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMG 165 G KG TT +S+ G ++VL+P++ + G ISR+IE + +R LK+ + L +PEGMG Sbjct: 187 GPIGTKGPRSTTNLSIPGRFIVLVPHSDQCG-ISRKIEDNKERQRLKKIIRDLTIPEGMG 245 Query: 166 LIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQD 225 +IVRTAG GK A DL L+ WE I+K +S AP +++E ++ R RD+L +D Sbjct: 246 IIVRTAGEGKKARYFVRDLHILLQTWEKIQKKMDSARAPACLYKEPDLAERTVRDFLTED 305 Query: 226 IGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRL 285 I +LIDN + + +A + + +SKI+LY IP+F Y IE QIE FQR+V L Sbjct: 306 IDRVLIDNEEDHGRISETVAQISKRS-TSKIQLYQDSIPIFERYNIEKQIEQTFQRQVPL 364 Query: 286 PSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVI 345 PSGG+IVI+ TEAL AID+N+ G+ +T F N EAA+E+ARQ+RLR++GGLI+I Sbjct: 365 PSGGAIVIEETEALIAIDVNTGSHKNRGNENDTIFQVNCEAAEEVARQIRLRNIGGLIII 424 Query: 346 DFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCP 405 DFIDM RH+ A+ +R+R+A+ D+A+ I IS G+++M+RQR+ S+ + CP Sbjct: 425 DFIDMKQRRHRNAILSRMRDAMSSDKAKTHILPISPLGIMQMTRQRMQESVSSGLYTDCP 484 Query: 406 RCSGTGTVRDNESLSLSILR 425 C G G V+ ++S+ + R Sbjct: 485 YCRGKGIVKSGTTVSVELQR 504 >UniRef50_Q2GKZ9 Ribonuclease, Rne/Rng family n=10 Tax=Anaplasmataceae RepID=Q2GKZ9_ANAPZ Length = 636 Score = 301 bits (770), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 172/430 (40%), Positives = 261/430 (60%), Gaps = 22/430 (5%) Query: 85 HGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNP-RAGGISRRI 143 H +++V++ Q+++VQI KEERG+K A +T+I LAG Y + MPN+ + GISRRI Sbjct: 162 HKMYKVQNVIKVDQKLMVQITKEERGSKCATFSTYIVLAGRYCIFMPNSGNKNSGISRRI 221 Query: 144 EGDD---RTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAES 200 DD R LKE L ++LP+ G+I+RTAG ++ + L+ DLS+ W+ +K + ES Sbjct: 222 --DDCVHRKNLKEFLDEMKLPKEAGVIIRTAGSNRTHKELERDLSYLQSTWDEVKSSFES 279 Query: 201 RPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKL-- 258 P L++ E++VI R RD+ +++ ++++ K L +++ ++ F +++++ Sbjct: 280 VTHPSLLYVEADVIKRTLRDFCDENVHDVVVAGSKAFGLVKEYAKSM----FGNRLRVRT 335 Query: 259 YTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEET 318 Y G IP+F+HY++ +QI + ++ LPSGG +VI TEAL +ID+NS R T IEET Sbjct: 336 YKGSIPIFTHYRVNAQILELYTDKIYLPSGGYLVITPTEALVSIDVNSGRMTGEDSIEET 395 Query: 319 AFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISH 378 A+ TN+EA EIARQ+ LR L GLIVIDFIDM R+ RAVE +REA + D+A+IQ + Sbjct: 396 AYRTNMEAVKEIARQVNLRGLSGLIVIDFIDMVKYRYCRAVEAEVREAFKGDKAKIQFGY 455 Query: 379 ISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQE 438 IS FGL+E+SRQR+ S+ +SS C C G G R ES+S SILR + A K + Sbjct: 456 ISAFGLMEISRQRVKQSILDSSTVQCHHCKGVGRTRSLESISASILRDVSYVANKNPEKI 515 Query: 439 VHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTL 498 + V + S+L N KR + IE+ + V + +D + Y++ R KG + Sbjct: 516 LVVSVVSSVVSHLFNSKRRQIAEIES-EFKVLIRLDVDDNLGISDYNI-RAEKGYSSL-- 571 Query: 499 SYMLPKLHEE 508 LHEE Sbjct: 572 ------LHEE 575 Score = 74.3 bits (181), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 35/78 (44%), Positives = 53/78 (67%), Gaps = 1/78 (1%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQ-KKANIYKGKITRIEPSLEAAFVDY 60 KR+LI+A +E+RVA++D ++ + D E +Q + NIY + RIEPSL+A F++Y Sbjct: 11 KRILIDAVYLDEIRVAVLDEGKVVEFDQELKDRKQLRGGNIYFAVVRRIEPSLQAVFIEY 70 Query: 61 GAERHGFLPLKEIAREYF 78 G +HGFLP EIA E++ Sbjct: 71 GVGKHGFLPFSEIAVEHY 88 >UniRef50_Q0ABM4 Ribonuclease G n=2 Tax=Proteobacteria RepID=Q0ABM4_ALHEH Length = 492 Score = 295 bits (755), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 184/470 (39%), Positives = 273/470 (58%), Gaps = 17/470 (3%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 +LIN T +E RVALV+ L +L +E N+YKG++ R+ P ++AAF++ G E Sbjct: 5 ILINVTPRET-RVALVENGVLQELHLERARRRGLVGNLYKGRVVRVLPGMQAAFIEAGLE 63 Query: 64 RHGFLPLKEIAR-EYFPANYSAHGRPN---IKDVLREGQEVIVQIDKEERGNKGAALTTF 119 R FL +IAR E P +GRP I ++L EGQEV+VQ+ K+ G+KGA LTT Sbjct: 64 RTAFLHASDIARAEPAPVGDEPNGRPPPLPIDELLTEGQEVVVQVLKDPIGSKGARLTTH 123 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEG-MGLIVRTAGVGKSA 177 I++ YLVL P + RA G+S R+E +R L+ SL G MG+IVRTA + Sbjct: 124 ITIPSRYLVLAPGS-RALGVSARVEDPAERERLRAIGESLLADRGDMGIIVRTAAEQVAE 182 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDN---- 233 EAL+ D F L+ W++I + A A +H++ + VRA RD ++ + +D+ Sbjct: 183 EALRADFDFLLRLWQSISERAAHASAGQRVHEDLPLTVRAMRDLAGSEVERVRVDSRENY 242 Query: 234 PKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVI 293 V+ R+ + P+ + +++ Y GE PLF Y IE +I A R V L SGG +VI Sbjct: 243 LNVVSFCRRFL-----PEMAPRVEYYPGERPLFDLYNIEDEILRALNRRVPLKSGGHLVI 297 Query: 294 DSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPV 353 D TEA+T +D+N+ +EET F TNLEAA IARQLRLR+LGG+I++DFIDM Sbjct: 298 DQTEAMTTVDVNTGAYVGHRTLEETIFKTNLEAAQAIARQLRLRNLGGIIIVDFIDMVEE 357 Query: 354 RHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 H+R V L +A+++D A+ QIS +S GL+EM+R+R SL CP C G G+V Sbjct: 358 EHKRQVLRALEKALQKDHAKTQISGVSALGLVEMTRKRTRESLEHQLCESCPTCGGRGSV 417 Query: 414 RDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIE 463 + E++S I R I EA + ++ + + + LL ++ +++ +E Sbjct: 418 KSAETVSYEIFREILREARQFESRRLVVLAATEVVDLLLEDESTSLAQLE 467 >UniRef50_Q1V2D3 Ribonuclease E/G n=5 Tax=Bacteria RepID=Q1V2D3_PELUB Length = 619 Score = 295 bits (755), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 167/420 (39%), Positives = 253/420 (60%), Gaps = 14/420 (3%) Query: 87 RPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG- 145 R I++V++ Q +++Q+ K+ERG KGAAL+TFIS+AG Y+VLMPN P+ GGISR+I Sbjct: 175 RYKIQEVIKPNQVILIQVLKDERGQKGAALSTFISIAGKYIVLMPNTPKGGGISRKIFNP 234 Query: 146 DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPF 205 +R +++ L + +P+ MGLIVRTAG K+ + DL +K W IK+ A + AP Sbjct: 235 GERKKIRTILNDIVIPKEMGLIVRTAGSNKTKNDIDHDLQTLIKTWNEIKENALNSIAPS 294 Query: 206 LIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPL 265 LIHQES++I R RD + I+I+ + + A Q+ L P KIK Y ++PL Sbjct: 295 LIHQESDIIKRTLRDMYDESTNSIVIEGNEGYKKA-QNFMKLMMPSHVKKIKKYREKVPL 353 Query: 266 FSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLE 325 F IE ++ + E++L SGG +VI+ TEAL +IDINS + + ++E TA +TNLE Sbjct: 354 FFKENIEEKLNQIYDSEIKLKSGGYLVINPTEALVSIDINSGSSIKQKNVESTALDTNLE 413 Query: 326 AADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLL 385 AA+EI+RQ+++RDL GLI+IDFIDM ++R VE +L+E R DRARIQI IS FGLL Sbjct: 414 AAEEISRQIKIRDLSGLIIIDFIDMLSFGNRRLVERKLKEQCRTDRARIQIGRISTFGLL 473 Query: 386 EMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPV 445 EMSRQRL S + T T +ES ++ IL+L+E +A+ + V + Sbjct: 474 EMSRQRLRES--------AVKWKVTLT---DESFAMKILKLVEVKAVLTKAKFVELKICE 522 Query: 446 PIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKL 505 I+ ++ + E + + ++ I+ ++ + P Y + K ++T + + KL Sbjct: 523 KISDFMKENFIEDLKYFEEK-NLIKIDIIADNSLIIPEYIIDLQNKTKKTIEIVQHIEKL 581 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 33/77 (42%), Positives = 50/77 (64%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K + I+A+ E RV L G+ + D + E + K NIY GK++R+EPSL+AAF+D+G Sbjct: 3 KNLYIDASHPNETRVVLKSGENIEDYEYEGLKNNLIKNNIYLGKVSRVEPSLQAAFIDFG 62 Query: 62 AERHGFLPLKEIAREYF 78 +RHGFL +I +Y+ Sbjct: 63 RDRHGFLSFNDIQSDYY 79 >UniRef50_A3ZLB1 Ribonuclease E n=4 Tax=Planctomycetaceae RepID=A3ZLB1_9PLAN Length = 588 Score = 295 bits (755), Expect = 7e-78, Method: Compositional matrix adjust. Identities = 162/378 (42%), Positives = 235/378 (62%), Gaps = 3/378 (0%) Query: 87 RPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD 146 +P I+++ + G EV+VQ+ KE G+KG L+T+IS+ G YLVLMP R G +SR+IE D Sbjct: 169 KPPIQEIFKRGDEVLVQVIKEGIGSKGPTLSTYISIPGRYLVLMPALGRVG-VSRKIEDD 227 Query: 147 D-RTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPF 205 R L+ L L P+G+G IVRTAG ++ + L D+++ L+ W+ I + ++ P Sbjct: 228 QVRRRLRSTLLELSPPKGLGFIVRTAGQERNKKELSRDMAYLLRLWKVIVRRLKNTTGPC 287 Query: 206 LIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPL 265 I++ES++I+R RD D+ I +D+ E A++ + L P +++K Y + PL Sbjct: 288 DIYEESDMIIRTIRDIFSSDVDSIYVDSEPAYERAKEFLQ-LVMPRHVNRLKKYESKDPL 346 Query: 266 FSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLE 325 F Y ++ +I QREV L GGSIVID TEAL AID+NS G EE A+ N+ Sbjct: 347 FHKYHLDEEIARINQREVPLRRGGSIVIDQTEALVAIDVNSGNFRYDGTAEEAAYQLNMM 406 Query: 326 AADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLL 385 AA EIARQLRLRDLGG++V DFIDM +H+R VE LR++V++DRAR +I S FGL+ Sbjct: 407 AAKEIARQLRLRDLGGVVVNDFIDMRREKHRRNVERALRDSVKRDRARTKILKTSPFGLI 466 Query: 386 EMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPV 445 EM+RQR+ PSL S CP C G G V+ ES+++ ++R++ A + V V Sbjct: 467 EMTRQRIRPSLKRSVFKDCPCCKGRGVVKSAESMAIEVVRMLLAAAHHDGASHVTIRVND 526 Query: 446 PIASYLLNEKRSAVNAIE 463 +A+YL N+KR + IE Sbjct: 527 EVATYLNNKKRRELARIE 544 Score = 72.4 bits (176), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 32/77 (41%), Positives = 50/77 (64%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K MLIN +Q EE R+A+V+ L + +E + NIYKG + +EPS++AAFVD+G Sbjct: 3 KEMLINVSQPEECRIAIVEDGILEEFYLERTSQDNYVGNIYKGVVVNLEPSIQAAFVDFG 62 Query: 62 AERHGFLPLKEIAREYF 78 ++GFL + ++ +YF Sbjct: 63 VGKNGFLHISDVEPQYF 79 >UniRef50_A5CEM7 Ribonuclease E n=2 Tax=Orientia tsutsugamushi RepID=A5CEM7_ORITB Length = 675 Score = 293 bits (749), Expect = 3e-77, Method: Compositional matrix adjust. Identities = 160/401 (39%), Positives = 245/401 (61%), Gaps = 11/401 (2%) Query: 71 KEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLM 130 +EIA E+ P H + I+DV+ GQ V+VQ KE RGNK A+ TT+ISL+G Y +L Sbjct: 153 QEIA-EFLPP----HKQQEIQDVISSGQIVLVQATKESRGNKNASFTTYISLSGKYCILT 207 Query: 131 PNNPRAGGISRRI-EGDDRTELKEALASL--ELPEGMGLIVRTAGVGKSAEALQWDLSFR 187 PN GISRRI +DR +LK + +L ++ + +I+RTAG ++A ++ D ++ Sbjct: 208 PNLSNHSGISRRITNSEDRKQLKTIVGNLISKITKTSSVIIRTAGSRRTAYEIKKDFNYL 267 Query: 188 LKHW-EAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAA 246 LK W E I A +++P P I+ E+++I + D + E++I + A + + A Sbjct: 268 LKLWNEIINTAKQAKP-PAFIYVENDIIRKTILDIYNISVQEMIIQGKAAYDYAVKFMNA 326 Query: 247 LGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINS 306 + P KIK + IP+F+ Y +E Q+ + ++ V LPSGG IVI+ TEAL AID+NS Sbjct: 327 I-LPSEVHKIKEHKSTIPIFAQYNLEEQLATLYKPIVTLPSGGYIVINPTEALIAIDVNS 385 Query: 307 ARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREA 366 + T +IEETA TNLEAA EI+ Q++LR+L GLI IDFI MT ++ + +E ++ Sbjct: 386 GKDTSEQNIEETAVKTNLEAAKEISHQIKLRNLSGLITIDFICMTDSKNHKLIEKSFKKY 445 Query: 367 VRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRL 426 + +D+A+IQ+ I+ FG+L++SRQRL PS ES+ +C CSG G VR ES ++ ILR Sbjct: 446 LAKDKAKIQVDSINSFGVLQLSRQRLRPSFLESNSVICSHCSGKGIVRAEESNAMIILRT 505 Query: 427 IEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQD 467 IE E + ++ + +Y+LN KR+ + IE + + Sbjct: 506 IENEIHTSKSNIINVYAHLHSVTYILNNKRTEIADIEKKYN 546 Score = 75.9 bits (185), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 35/78 (44%), Positives = 51/78 (65%), Gaps = 1/78 (1%) Query: 2 KRMLINATQQEELRVALVDGQ-RLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 KR+L++A+ E RVAL+D R+ +++ E+ K NIY IT+IEPSL+AAF+DY Sbjct: 3 KRILVDASYPNETRVALIDNNCRIAEIEYETASKHLIKGNIYLATITKIEPSLQAAFIDY 62 Query: 61 GAERHGFLPLKEIAREYF 78 + GFLP EI +Y+ Sbjct: 63 SNGKSGFLPFSEIHPDYY 80 >UniRef50_D1AAW2 Ribonuclease, Rne/Rng family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AAW2_THECD Length = 1041 Score = 290 bits (741), Expect = 3e-76, Method: Compositional matrix adjust. Identities = 150/416 (36%), Positives = 249/416 (59%), Gaps = 15/416 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 ++R+++ + E ++A+++ L + ++ H+ N+Y GK+ + PS+EAAFVD Sbjct: 507 VERVMVICQRGERTQIAVLEDGVLVEHYVDRASHQSYVGNVYLGKVQNVLPSMEAAFVDI 566 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPN----IKDVLREGQEVIVQIDKEERGNKGAAL 116 G R+ L E+ N+ G I+ L+ GQ V+VQ+ K+ G+KGA L Sbjct: 567 GKGRNAVLYAGEV-------NWDVAGLVGQPRRIEQALKSGQSVLVQVTKDPVGHKGARL 619 Query: 117 TTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKS 176 T+ ISL G YLV +P+ G ISR++ +R+ LK+ L + +P+ G+IVRTA G + Sbjct: 620 TSQISLPGRYLVYVPDGSMTG-ISRKLPDKERSRLKQVLKKI-MPDNAGVIVRTAAEGAT 677 Query: 177 AEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKV 236 E L D++ WE I K A++ AP L+H E ++ +R RD +D ++++ Sbjct: 678 EEELAGDIARLSAQWEHIHKQAKTASAPALLHGEPDLTIRVVRDIFNEDFSKLVVSGDTA 737 Query: 237 LELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDST 296 ++ +++ + P + +++ + + + S Y+I+ QI A +R+V LPSGGS+VID T Sbjct: 738 WDMVSEYVGYVA-PHLAERLERWESDQDVLSAYRIDEQIAKALERKVWLPSGGSLVIDRT 796 Query: 297 EALTAIDINSARAT-RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRH 355 EA+T +D+N+ + T +GG++EET NLEAA+EI RQLRLRD+GG+IVIDFIDM + Sbjct: 797 EAMTVVDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESN 856 Query: 356 QRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTG 411 + V RL E + +DR + Q++ ++ GL++M+R+R+ L E+ C C+G G Sbjct: 857 RELVLRRLLECLSRDRTKHQVAEVTSLGLVQMTRKRVGQGLLEAFSEPCECCNGRG 912 >UniRef50_D1SD19 Ribonuclease, Rne/Rng family n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1SD19_9ACTO Length = 1092 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 153/418 (36%), Positives = 247/418 (59%), Gaps = 15/418 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R+++ + + ++A+++ L + + N+Y GK+ + PS+EAAFVD Sbjct: 535 VDRVMVVRQRGDRTQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQNVLPSMEAAFVDI 594 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRP----NIKDVLREGQEVIVQIDKEERGNKGAAL 116 G R+ L E+ N+ A G +I+ LR G V+VQ+ K+ G+KGA L Sbjct: 595 GRGRNAVLYAGEV-------NWDATGLEGRARSIEQALRSGDSVLVQVTKDPIGHKGARL 647 Query: 117 TTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKS 176 T+ I+L+G +LV +PN A GISR++ +R L++ L L +P+G G+IVRTA G S Sbjct: 648 TSHIALSGRHLVYVPNG-NASGISRKLPDTERKRLRDVLKKL-VPDGAGVIVRTAAEGAS 705 Query: 177 AEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKV 236 + L D+ WE I+ A AP L+++E ++++R RD +D E++I+ Sbjct: 706 EDELARDVKRLQAQWEDIQAKATEGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGEPA 765 Query: 237 LELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDST 296 +L +++ + PD ++++ + G +F+ Y+I+ QI R+V LPSGGS+VID T Sbjct: 766 YDLVESYLSHV-SPDLVARLRRHAGVADVFAEYRIDEQILKGLDRKVFLPSGGSLVIDRT 824 Query: 297 EALTAIDINSARAT-RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRH 355 EA+T +D+N+ + T GG++EET NLEAA+EI RQLRLRDLGG++VIDFIDM + Sbjct: 825 EAMTVVDVNTGKYTGSGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESN 884 Query: 356 QRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 + V RL E + +DR + Q++ I+ GL++M+R+R+ L E+ C C G G + Sbjct: 885 RELVLRRLTECLGRDRTKHQVTEITSLGLVQMTRKRIGAGLLEAFSETCECCKGRGVI 942 >UniRef50_D2PUT1 Ribonuclease, Rne/Rng family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PUT1_9ACTO Length = 1119 Score = 287 bits (734), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 147/380 (38%), Positives = 234/380 (61%), Gaps = 7/380 (1%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQ 98 N+Y G++ + PS+EAAF+D G R+ L E+ +G I+ VL+ GQ Sbjct: 566 GNVYLGRVQNVLPSMEAAFIDIGKGRNAVLYAGEVDWNTL---GGGNGPRKIESVLKSGQ 622 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASL 158 V+VQ+ K+ G+KGA LT ISL G Y+V +P GGISR++ +R+ LK L + Sbjct: 623 AVLVQVTKDPIGHKGARLTNQISLPGRYVVYVPRGGN-GGISRKLPDTERSRLKGILKDI 681 Query: 159 ELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAF 218 +P+ G+IVRTA G + E L D+S +WE I K ++S AP L+H E ++++R Sbjct: 682 -VPDEAGVIVRTAAEGATEEELTADVSRLQAYWEDIDKKSKSGQAPQLLHGEPDLLIRVV 740 Query: 219 RDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESA 278 RD +D +++I + ++++A+ P + ++ +TG+ +F++++I+ QI+ A Sbjct: 741 RDLFTEDFAKLVISGDDAFDQVSEYVSAVA-PHLAERVAKWTGDGDVFANFRIDEQIKKA 799 Query: 279 FQREVRLPSGGSIVIDSTEALTAIDINSARAT-RGGDIEETAFNTNLEAADEIARQLRLR 337 R+V LPSGGS++ID TEA+T +D+N+ + T GG++EET NLEAA+EI RQLRLR Sbjct: 800 LDRKVWLPSGGSLIIDRTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLR 859 Query: 338 DLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLG 397 D+GG+IVIDFIDM ++ V RL E + +DR + Q++ ++ GL++M+R+R+ L Sbjct: 860 DIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRIGTGLL 919 Query: 398 ESSHHVCPRCSGTGTVRDNE 417 E+ C C G G + +E Sbjct: 920 EAFGENCDHCGGRGLILHDE 939 >UniRef50_C4PNX0 Ribonuclease E n=17 Tax=Chlamydiales RepID=C4PNX0_CHLTZ Length = 512 Score = 286 bits (733), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 174/507 (34%), Positives = 286/507 (56%), Gaps = 20/507 (3%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 +L+N + +E+R A + +L+DL IE Q K NIY+G++T I ++++AF++ Sbjct: 5 ILLN-IESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNILRNIQSAFINIDER 63 Query: 64 RHGFLPLKEIAR------EYFPANYSA-HGRPN--------IKDVLREGQEVIVQIDKEE 108 +GF+ + ++ + F + A H P I+++L+ V+VQ+ KE Sbjct: 64 ENGFIHISDVLENSKKFEQMFDIDSDADHAEPQPEETSEAPIEELLKLDSPVLVQVVKEP 123 Query: 109 RGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLI 167 G KGA LT+ IS+ G YLVL+PN+P G +SR+IE R +LK+ + S E+P+ MGLI Sbjct: 124 IGTKGARLTSNISIPGRYLVLLPNSPHRG-VSRKIEDPLMRDQLKQLIRSFEMPQNMGLI 182 Query: 168 VRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIG 227 RTA + S E L + L W++I + S P L+++E++++ +A + + Sbjct: 183 CRTASISASTETLINEAQNLLNTWQSILEKFYSPDHPSLLYEETDILKKAVMTCVDKSYK 242 Query: 228 EILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPS 287 +LID+ + ++ + PD + KI+ Y +P+F + IE +I+ A +R++ L S Sbjct: 243 RLLIDDYATYQKCKRLLGKYS-PDTTVKIEYYRDSVPMFERFNIEKEIDRATKRKIWLSS 301 Query: 288 GGSIVIDSTEALTAIDINSARATRG-GDIEETAFNTNLEAADEIARQLRLRDLGGLIVID 346 GG + D TEA+ ID+NS R+T+ +EET NLEAA+EIARQLRLR++GGL++ID Sbjct: 302 GGYLFFDKTEAMHTIDVNSGRSTQLENGVEETLVQINLEAAEEIARQLRLRNIGGLVIID 361 Query: 347 FIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPR 406 FIDM ++QR V RL+E ++ D AR I +S FGL+EM+RQR SL ++ CP Sbjct: 362 FIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQTLFTTCPY 421 Query: 407 CSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQ 466 C+G ++ +ES+ + I R +++ + + +V IA Y+ E+ +Q Sbjct: 422 CNGNAIIKTSESILIEIERDLKKIIKHKEHTNLCLVVHPEIAHYMKQEQDDVELIRLAKQ 481 Query: 467 DGVRCVIVPNDQMETPHYHVLRVRKGE 493 + I +D + HY + GE Sbjct: 482 LKAKLQINTSDSIHLNHYQFFSLITGE 508 >UniRef50_A8M0Z2 Ribonuclease, Rne/Rng family n=2 Tax=Salinispora RepID=A8M0Z2_SALAI Length = 1058 Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 145/380 (38%), Positives = 231/380 (60%), Gaps = 15/380 (3%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRP----NIKDVL 94 N+Y GK+ + PS+EAAFVD G R+ L E+ N+ A G +I+ L Sbjct: 546 GNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV-------NWDATGLEGRARSIEQAL 598 Query: 95 REGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEA 154 + G V+VQ+ K+ G+KGA LT+ ++L+G +LV +P GISR++ ++R L++A Sbjct: 599 KSGDSVLVQVTKDPIGHKGARLTSHVALSGRHLVYVPGG-NTSGISRKLPDNERRRLRDA 657 Query: 155 LASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVI 214 L L +PEG G+IVRTA G S + L D+ WE I+ A AP L+++E +++ Sbjct: 658 LKKL-VPEGAGVIVRTAAEGASEDELARDVKRLQAQWEDIQAKAGKGGAPVLLYEEPDLV 716 Query: 215 VRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQ 274 +R RD +D E++I+ ++ +++ + PD ++++ + G + +F+ Y+I+ Q Sbjct: 717 IRVVRDLFNEDFRELVIEGEGAYDMVESYLSHV-SPDLVARLRRHVGTVDVFTEYRIDEQ 775 Query: 275 IESAFQREVRLPSGGSIVIDSTEALTAIDINSARATR-GGDIEETAFNTNLEAADEIARQ 333 I R+V LPSGG +VID TEA+T +D+N+ + T GG++EET NLEAA+EI RQ Sbjct: 776 ILKGLDRKVFLPSGGHLVIDRTEAMTVVDVNTGKYTGAGGNLEETVTRNNLEAAEEIVRQ 835 Query: 334 LRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLS 393 LRLRD+GG++VIDFIDM ++ V RL E + +DR + Q++ I+ GL++M+R+R+ Sbjct: 836 LRLRDIGGIVVIDFIDMVLESNRELVLRRLTECLGRDRTKHQVTEITSLGLVQMTRKRIG 895 Query: 394 PSLGESSHHVCPRCSGTGTV 413 L E+ C C G G + Sbjct: 896 AGLLEAFSETCDCCKGRGLI 915 >UniRef50_C8NQN5 Ribonuclease E n=5 Tax=Corynebacterium RepID=C8NQN5_COREF Length = 1148 Score = 284 bits (726), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 164/431 (38%), Positives = 252/431 (58%), Gaps = 28/431 (6%) Query: 2 KRMLINATQQEE-----LRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAA 56 +RM++ Q+ + +V +++ L + + S NIY G++ + PS+EAA Sbjct: 352 RRMIVRERQRTDGTGLVTQVGVLEDDLLVEQFVTSDSQSSMVGNIYLGRVQNVLPSMEAA 411 Query: 57 FVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL 116 F+D G R+G L E+ ++ A GR I+ L+ GQ+V+VQ+ K+ G+KGA L Sbjct: 412 FIDIGKGRNGVLYAGEV--DWKAAGLGGRGR-RIEQALKSGQKVLVQVTKDPVGHKGARL 468 Query: 117 TTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKS 176 TT ISLAG YLV +P R+ GISR++ G +R LKE L + P+G G I+RTA G S Sbjct: 469 TTQISLAGRYLVYVPGG-RSAGISRKLPGPERKRLKEILGRVVPPQG-GTIIRTAAEGVS 526 Query: 177 AEALQWDLSFRLKHWEAI-------KKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEI 229 E + D++ WE I KK+ +RP +++E +++V+ RD +D + Sbjct: 527 EENIAADVNRLHTLWEQIQERTKQEKKSRNTRP--VTMYEEPDMLVKVIRDLFNEDFTSL 584 Query: 230 LIDNPKVLELARQHIAALGRPDFSSKIKL-----YTGEIPLFSHYQIESQIESAFQREVR 284 ++D + R +I ++ PD S+++ Y G+ F + + +Q+E A R+V Sbjct: 585 IVDGDRAWNTVRAYIQSVA-PDLVSRVEHFDRADYDGK-DAFEAFGLNTQLEEAMSRKVN 642 Query: 285 LPSGGSIVIDSTEALTAIDINSAR-ATRG-GDIEETAFNTNLEAADEIARQLRLRDLGGL 342 LPSGGS++ID TEA+T IDIN+ R +G G++EET N+EAA+EI RQLRLRD+GG+ Sbjct: 643 LPSGGSLIIDKTEAMTVIDINTGRYVGKGVGNLEETVTLNNIEAAEEIVRQLRLRDIGGM 702 Query: 343 IVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHH 402 IVIDFIDM ++ V RL EA+ DR R Q+S ++ GL++M+R+R+ L E+ Sbjct: 703 IVIDFIDMVLPENRDLVLRRLNEALENDRTRHQVSEVTSLGLVQMTRKRIGAGLLETFSS 762 Query: 403 VCPRCSGTGTV 413 C C+G G V Sbjct: 763 ECEHCAGRGLV 773 >UniRef50_D2NSV3 Ribonuclease G and E n=2 Tax=Rothia mucilaginosa RepID=D2NSV3_9MICC Length = 1288 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 153/389 (39%), Positives = 233/389 (59%), Gaps = 17/389 (4%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPN----IKDVL 94 N+Y GK+ + PS+EAAFVD G R+ L E+ N+ G I++ L Sbjct: 455 GNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV-------NWDVTGLDGAPRKIENAL 507 Query: 95 REGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEA 154 + G V+VQ+ K+ G+KGA LT+ +SL G +LV +P G ISR++ +R LK+ Sbjct: 508 KPGDSVLVQVTKDPIGHKGARLTSQVSLPGRFLVYVPGGSMTG-ISRKLPDTERARLKKI 566 Query: 155 LASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRP--APFLIHQESN 212 L +LPEG G+IVRTA G S E L D++ WE I++ A+SR AP +++QE + Sbjct: 567 LKD-KLPEGAGVIVRTAAEGASEEELTHDINRLRAQWEEIQEKAKSRKVLAPEMLYQEPD 625 Query: 213 VIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIE 272 ++++ RD +D +++ + ++ + PD S+++ + G+ LF HY+I Sbjct: 626 LMIKTVRDVFNEDFTAMIVQGENAWDSIEAYVTYVA-PDLVSRLQQWDGDDDLFDHYRIN 684 Query: 273 SQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT-RGGDIEETAFNTNLEAADEIA 331 Q+ A R+V LPSGGS+VID TEA+T +D+N+ + T GG++EET NLEAA+EI Sbjct: 685 EQLAKALDRKVYLPSGGSLVIDRTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIV 744 Query: 332 RQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQR 391 RQLRLRD+GG+IVIDFIDM ++ V RL E + +DR + Q++ ++ GL++M+R+R Sbjct: 745 RQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLIECLGRDRTKHQVAEVTSLGLVQMTRKR 804 Query: 392 LSPSLGESSHHVCPRCSGTGTVRDNESLS 420 L L E C C+G G V ++ LS Sbjct: 805 LGTGLLEVFSEPCEHCAGRGLVVHDQPLS 833 >UniRef50_A8L1W0 Ribonuclease, Rne/Rng family n=25 Tax=Actinobacteridae RepID=A8L1W0_FRASN Length = 1427 Score = 281 bits (720), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 151/380 (39%), Positives = 229/380 (60%), Gaps = 15/380 (3%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHG---RP-NIKDVL 94 N+Y G++ + S+EAAFVD G R+ L E+ NY A G RP I+ VL Sbjct: 814 GNVYLGRVQNVLASMEAAFVDIGKGRNAVLYAGEV-------NYDASGLDGRPRKIEQVL 866 Query: 95 REGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEA 154 + GQ V+VQ+ K+ G+KGA LT+ +SL G YLV +P+ AG ISR++ +R LK Sbjct: 867 KSGQSVLVQVSKDPIGHKGARLTSQVSLPGRYLVYVPDGQNAG-ISRKLPDTERARLKSI 925 Query: 155 LASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVI 214 L + PE G+IVRTA G S L+ D+ + WE I++ A+ AP L++ E +++ Sbjct: 926 LKKI-TPENGGVIVRTAAEGASEAELERDIERLVAQWEDIQRKAQKASAPSLLYGEPDLV 984 Query: 215 VRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQ 274 VR RD +D E+++ ++ + PD +++ Y G +F+ ++++ Q Sbjct: 985 VRVIRDIFNEDFTELVVQGSHEAATVEGYVDTVA-PDLRDRVRRYVGTGDVFAEHRVDEQ 1043 Query: 275 IESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT-RGGDIEETAFNTNLEAADEIARQ 333 + A R+V LPSGGS+VID TEA+T ID+N+ + T +GG++EET NLEAA+EI RQ Sbjct: 1044 LAKALDRKVWLPSGGSLVIDRTEAMTVIDVNTGKFTGKGGNLEETVTKNNLEAAEEIVRQ 1103 Query: 334 LRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLS 393 LRLRD+GG+IVIDFIDM ++ V RL E + +DR R Q++ ++ GL++M+R+R+ Sbjct: 1104 LRLRDIGGIIVIDFIDMVLESNRELVLRRLTECLGRDRTRHQVAEVTSLGLVQMTRKRVG 1163 Query: 394 PSLGESSHHVCPRCSGTGTV 413 L E+ C C+G G + Sbjct: 1164 QGLLEAYSEPCAHCNGRGVL 1183 >UniRef50_D1B5Z1 Ribonuclease, Rne/Rng family n=3 Tax=Synergistaceae RepID=D1B5Z1_THEAS Length = 496 Score = 281 bits (720), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 154/427 (36%), Positives = 243/427 (56%), Gaps = 19/427 (4%) Query: 2 KRMLINATQQEELRVALVD-GQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 K ++ N + EE RVA++D RL D+ IE QK IYK ++ + P + AAFV+ Sbjct: 5 KTIVANTLESEESRVAVLDPSGRLLDIYIERMWERQKAGEIYKARVDNVLPGMNAAFVNL 64 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+GFL L+++ R P G+E++VQ+ K R KGA +T + Sbjct: 65 GDGRNGFLYLEDLGRSPHP-----------------GEEILVQVAKTARKGKGARVTPKL 107 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLVL+P G +S+RIE ++ + + L P+G G+IVRT G + L Sbjct: 108 SLPGRYLVLVPEGKDVG-VSKRIEDEEERQRLKVLGREVRPQGFGIIVRTVAQGCHMDQL 166 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 + D+ + W++I AA PAP L++++ ++ R RD L + E+++DNP+ L+L Sbjct: 167 KSDVEDLMDLWDSICAAASRSPAPCLLYRDRGLLDRVLRDELDHQVAEVVVDNPEELDLV 226 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 R+ + ++ LY G P+F Y +E ++E A +R+V LPSG +VID EALT Sbjct: 227 REMVGRFFSQGKGPEVTLYRGRTPVFEVYGVEREMELALERKVWLPSGAYLVIDQAEALT 286 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ID+N+ + T D++ T TNLEAA+EIARQLRLR +GG++V+DFIDM H++ + Sbjct: 287 VIDVNTGKFTGSKDLKSTILKTNLEAAEEIARQLRLRAIGGIVVVDFIDMDDESHRQILL 346 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 RE ++ DR R ++ ++ GL+E++R+R L CP C G+G V ++ + Sbjct: 347 ETTRELLKGDRQRAKVFGVTSLGLVELTRRRTRGDLKSVMTRGCPMCGGSGLVEREDACA 406 Query: 421 LSILRLI 427 + + R + Sbjct: 407 MRLKRAV 413 >UniRef50_C4RPB5 Ribonuclease Rne/Rng n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RPB5_9ACTO Length = 1086 Score = 281 bits (718), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 146/376 (38%), Positives = 227/376 (60%), Gaps = 7/376 (1%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQ 98 N+Y GK+ + PS+EAAFVD G R+ L E+ + R +I+ LR G Sbjct: 573 GNVYLGKVQNVLPSMEAAFVDIGRGRNAVLYAGEV--NWDTTGLEGRAR-SIEQALRSGD 629 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASL 158 V+VQ+ K+ G+KGA LT+ I+L+G +LV +PN A GISR++ +R L++ L L Sbjct: 630 SVLVQVTKDPIGHKGARLTSHIALSGRHLVYVPNG-NASGISRKLPDTERKRLRDVLKKL 688 Query: 159 ELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAF 218 +P+G G+IVRTA G S + L D+ WE I+ S AP L+++E ++++R Sbjct: 689 -VPDGAGVIVRTAAEGASEDELARDVKRLQAQWEDIQAKVASGGAPVLLYEEPDLVIRVV 747 Query: 219 RDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESA 278 RD +D E++I+ + + +++ + PD +++ + G +F+ Y+I+ QI Sbjct: 748 RDLFNEDFRELVIEGDESYGMVESYLSHVS-PDLVDRVRRHVGTSDVFATYRIDEQILKG 806 Query: 279 FQREVRLPSGGSIVIDSTEALTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLR 337 R+V LPSGG +VID TEA+T +D+N+ + T GG++EET NLEAA+EI RQLRLR Sbjct: 807 LDRKVFLPSGGHLVIDRTEAMTVVDVNTGKYTGAGGNLEETVTRNNLEAAEEIVRQLRLR 866 Query: 338 DLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLG 397 D+GG++VIDFIDM ++ V RL E + +DR + Q++ I+ GL++M+R+R+ L Sbjct: 867 DIGGIVVIDFIDMVLESNRELVLRRLTECLGRDRTKHQVTEITSLGLVQMTRKRIGAGLL 926 Query: 398 ESSHHVCPRCSGTGTV 413 E+ C C G G V Sbjct: 927 EAFSETCDCCKGRGVV 942 >UniRef50_D0LZK2 Ribonuclease, Rne/Rng family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LZK2_HALO1 Length = 543 Score = 280 bits (716), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 167/449 (37%), Positives = 255/449 (56%), Gaps = 30/449 (6%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG-- 61 +L+ + E RV +V L + +ES NIY+G+++R+ P ++AAFVD G Sbjct: 5 LLVVNAEGPETRVGVVHEGTLSEYFVESKRDRGIVGNIYRGRVSRVLPGMQAAFVDLGPT 64 Query: 62 AERHGFLPLKEIA-----REYFP-------------------ANYSAHGRPNIKDVLREG 97 ER GFL + +I R+ F + A+ I+D+L+ Sbjct: 65 VERAGFLYVADILGAADERKLFADEDPDSDDAPEGTAARLARSRKRANANRKIEDLLKAD 124 Query: 98 QEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALA 156 QEV+VQ+ KE G KGA LT ++SL G Y V MP + G +SRRI + +R L++ + Sbjct: 125 QEVLVQVVKEPIGLKGARLTGYLSLPGRYNVFMPAVQQVG-VSRRISSEAERRRLRKIVT 183 Query: 157 SLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVR 216 S+ G G IVRTA G + ++ D+ + L+ W I++ S P LI+ + ++++R Sbjct: 184 SVGHKSG-GFIVRTAAEGVVDQEIRDDVDYLLRLWSEIQRRERSMKGPGLIYADLDLVLR 242 Query: 217 AFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIE 276 RD LR D EI+ID+ + + AR+ A P +IK Y G P+F HY +E+++ Sbjct: 243 TIRDLLRADTKEIVIDDEEQYDRARKFTMAF-LPPAVDRIKQYRGRQPIFDHYGVEAELR 301 Query: 277 SAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRL 336 +A R V L SGGS+VID EALTAID+N+ D+EET N+EA E+ARQLRL Sbjct: 302 TALGRRVELKSGGSLVIDQGEALTAIDVNTGSFVGKRDLEETVTKNNIEACREVARQLRL 361 Query: 337 RDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSL 396 R++GG+IVIDF+DM +++ V + L +A+ DR+R ++ IS GL+EM+R+R SL Sbjct: 362 RNIGGIIVIDFVDMDKENNRKKVWDILNQALASDRSRCNLTKISELGLVEMTRKRTRESL 421 Query: 397 GESSHHVCPRCSGTGTVRDNESLSLSILR 425 + CP CSG+G V+ +++ +LR Sbjct: 422 NQLLTEACPTCSGSGVVKSTTTVAHEVLR 450 >UniRef50_C2BMV7 Ribonuclease E n=3 Tax=Corynebacterium RepID=C2BMV7_9CORY Length = 1294 Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 155/386 (40%), Positives = 233/386 (60%), Gaps = 18/386 (4%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRP-NIKDVLREG 97 NIY G++ + PS+EAAFVD G R+G L EI ++ HGR +++ L+ G Sbjct: 447 GNIYLGRVQNVLPSMEAAFVDIGQGRNGVLYAGEI--DWRKTKL--HGRARKVENALKSG 502 Query: 98 QEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALAS 157 +V+VQ+ K+ G+KGA LTT ISLAG YLV +P R+ GISR++ +R LK+ L Sbjct: 503 DQVLVQVAKDPIGHKGARLTTQISLAGRYLVYVPGG-RSAGISRKLPAPERKRLKDILGR 561 Query: 158 LELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAI----KKAAESRPA-PFLIHQESN 212 + +P G I+RTA EA+ D++ WE I KK S+ A P +++E N Sbjct: 562 V-VPGDGGAIIRTAAENVPEEAIATDVNRLHSRWEDIVAHAKKEKSSKGAKPVTMYEEPN 620 Query: 213 VIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLY----TGEIPLFSH 268 ++++ RD +D E+++D + R ++ ++ PD + ++ Y G F Sbjct: 621 MLIKVVRDLFNEDFTELIVDGKRSFNTVRAYVDSMA-PDLADRVVRYRAKDHGGQDAFEA 679 Query: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT-RGGDIEETAFNTNLEAA 327 Y+I+ Q+ A R+V LPSGG++VID TEA+T ID+N+ + T GG++EET NLEAA Sbjct: 680 YRIDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGSGGNLEETVTRNNLEAA 739 Query: 328 DEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEM 387 +EI RQ+RLRDLGG+IV+DFIDM +Q V RL+EA+ +DR R Q+S ++ GL++M Sbjct: 740 EEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRLKEALGRDRTRHQVSEVTSLGLVQM 799 Query: 388 SRQRLSPSLGESSHHVCPRCSGTGTV 413 +R+RL L E+ C C+G G + Sbjct: 800 TRKRLGTGLVETFSTECECCNGRGII 825 >UniRef50_A4F9K3 Ribonuclease, Rne/Rng family n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F9K3_SACEN Length = 1075 Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 157/418 (37%), Positives = 246/418 (58%), Gaps = 16/418 (3%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +RM++ ++ ++A+++ L + + S G N+Y G++ + PS+EAAFVD G Sbjct: 403 RRMVVR-ENGDQTQIAVLEDNVLVENFVTSAGSGSLVGNVYLGRVQNVLPSMEAAFVDIG 461 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFIS 121 R+ L E+ ++ A + R I+ L G V+VQ+ K+ G+KGA LTT IS Sbjct: 462 RGRNAVLYAGEV--DWDAAGLAGKAR-RIEQALSTGDSVLVQVTKDPVGHKGARLTTQIS 518 Query: 122 LAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQ 181 L G +LV +P A GISR++ ++R LKE L + +PE G+I+RTA G S EAL Sbjct: 519 LPGRFLVYVPGG-GATGISRKLPDNERKRLKEILKRI-VPENAGVIIRTASEGTSEEALD 576 Query: 182 WDLSFRLKHWEAIKKAAES--RPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPK---V 236 D+ WE IK+ A+S AP L+++E +++++ RD +D + + + Sbjct: 577 RDVRRLQAQWEVIKEKADSPKAQAPQLLYEEPDLLIKVVRDLFTEDFSAMAVQGNQAWDT 636 Query: 237 LELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDST 296 +E +H+A PD + ++ + G+ +F+ +I QI A R+V LPSGG +VID T Sbjct: 637 IEAYVKHVA----PDLAGRLSKHVGKNDVFTEQRISEQIAKALDRKVWLPSGGYLVIDRT 692 Query: 297 EALTAIDINSARAT-RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRH 355 EA+T ID+N+ + T GG++EET NLEAA+EI RQLRLRD+GG+IVIDFIDM + Sbjct: 693 EAMTVIDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESN 752 Query: 356 QRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 + V RL E + +DR R Q++ ++ GL++M+R+R+ L E+ C C G G + Sbjct: 753 RDLVLRRLTECLGRDRTRHQVAEVTSLGLVQMTRKRVGTGLLEAYSSTCEHCRGRGLL 810 >UniRef50_C7NH23 RNAse G n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NH23_KYTSD Length = 959 Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 152/381 (39%), Positives = 223/381 (58%), Gaps = 16/381 (4%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPN-----IKDV 93 N+Y G++ + PS+EAAFVD G R+G L E+ N+ A G P I+ Sbjct: 352 GNVYLGRVQNVLPSMEAAFVDIGKGRNGVLYAGEV-------NWDAAGLPKGEQKRIESA 404 Query: 94 LREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKE 153 L+ GQ V+VQ+ K+ G+KGA LT ISL G YLV +P N G ISR++ +R LK+ Sbjct: 405 LQPGQPVLVQVTKDPIGHKGARLTGQISLPGRYLVYVPGNTTTG-ISRKLPDTERARLKK 463 Query: 154 ALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNV 213 L + +P G+IVRTA G + L+ D+ WE I A AP L+H E ++ Sbjct: 464 ILKDV-VPADAGVIVRTAAEGAAEAELRADVERLTTQWERIAAAQAKGSAPTLVHGEPDL 522 Query: 214 IVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIES 273 VR RD +D ++++ P E +I A+ PD + K++ + GE +F H++IE Sbjct: 523 TVRVIRDVFNEDFTKLVVSGPTAWESVTSYIDAVA-PDLTPKLERWEGEQDVFEHHRIEE 581 Query: 274 QIESAFQREVRLPSGGSIVIDSTEALTAIDINSAR-ATRGGDIEETAFNTNLEAADEIAR 332 QI A R+V LPSGGS++ D TEA+T +D+N+ + GG++EET N+EAA+EI R Sbjct: 582 QIAKAMDRKVWLPSGGSLIFDRTEAMTVVDVNTGKFVGSGGNLEETVTKNNIEAAEEIVR 641 Query: 333 QLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRL 392 QLRLRD+GG+IV+DFIDM ++ V RL E + +DR + Q++ ++ GL++M+R+R+ Sbjct: 642 QLRLRDIGGIIVVDFIDMVLESNRDLVVRRLVECLARDRTKHQVAEVTSLGLVQMTRKRV 701 Query: 393 SPSLGESSHHVCPRCSGTGTV 413 L E C C G G V Sbjct: 702 GSGLVEVYGETCEHCDGHGLV 722 >UniRef50_A1HNZ2 Ribonuclease, Rne/Rng family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNZ2_9FIRM Length = 473 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 161/430 (37%), Positives = 246/430 (57%), Gaps = 26/430 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + +I + EE R+ALV+ L + +E NIYKGK+ + P ++AAF+D Sbjct: 1 MGKTIIASIMPEESRMALVEDGELVEYVLERSATGHLVGNIYKGKVKNVLPGMQAAFIDI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +++ +L Y H N L GQ++++QI K+ G+KG TT + Sbjct: 61 GGDKNAYL-------------YVGHADANAGR-LTVGQDILIQIVKDASGSKGPRTTTGL 106 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 L G Y VL P + G+SRRIE D +R L++ LA P+G+G+IVRTA G S Sbjct: 107 MLPGRYAVLAPYSD-GTGVSRRIEDDAERKRLRQ-LADKVKPDGVGMIVRTAAAGCSETE 164 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDN----PK 235 L D+ + W A+ A+ PAP L++++ ++ +R RDYL D+ E++IDN + Sbjct: 165 LARDVEYLHNLWAALAARAKRSPAPALLYRDVDLAIRIVRDYLDDDVTEVVIDNRDAYGR 224 Query: 236 VLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDS 295 V +L QH+A P +K+K Y +F HY I + + +REV L GG +VID Sbjct: 225 VCDLL-QHLA----PAALAKVKFYQYPEDIFVHYGIAADLNRLLKREVELACGGFLVIDQ 279 Query: 296 TEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRH 355 TEALT ID+N+ R + +T F N+EAA EIARQLRLRD+GG+I++DFIDM H Sbjct: 280 TEALTVIDVNTGRFVGDTSLSDTVFRVNMEAAAEIARQLRLRDIGGIIIVDFIDMAKAEH 339 Query: 356 QRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRD 415 ++AV L E +R+DR R +I ++ GL+E++R++ L + CP C+G G ++ Sbjct: 340 KQAVLAFLAEKMRRDRTRSKILGLTSLGLVEITRKKGRQDLNSLMYSECPCCAGRGRIQS 399 Query: 416 NESLSLSILR 425 E+++++I R Sbjct: 400 PETVAINIRR 409 >UniRef50_C7MPQ3 Ribonuclease, Rne/Rng family n=2 Tax=Actinomycetales RepID=C7MPQ3_SACVD Length = 1093 Score = 276 bits (706), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 152/419 (36%), Positives = 244/419 (58%), Gaps = 12/419 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 ++R ++ A + + ++ +++ L + + S N+Y G++ + PS+EAAF+D Sbjct: 494 VERTMVVAERGDSTQIGVLEDGVLVEHFVTSSDSGSIVGNVYLGRVQNVLPSMEAAFIDI 553 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ ++ A R I+ L G V+VQ+ K+ G+KGA LTT I Sbjct: 554 GRGRNAVLYAGEV--DWDAAGLEGKAR-KIEQALTTGDHVLVQVTKDPVGHKGARLTTQI 610 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G +LV +P+ A GISR++ ++R LK+ L + +P G+I+RTA G S E L Sbjct: 611 SLPGRFLVYVPSGG-ATGISRKLPENERRRLKDILKRI-VPSDAGVIIRTASEGISEEEL 668 Query: 181 QWDLSFRLKHWEAIKKAAES-----RPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPK 235 D+ WE IK+ AE+ AP L++QE +++V+ RD +D ++++ Sbjct: 669 ARDVRRLKAQWEVIKEKAEAASAKKSGAPALLYQEPDLLVKVIRDLFTEDFKKLVVQGDT 728 Query: 236 VLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDS 295 E R ++ + PD +++ Y G +F+ Y+I+ Q+ A R+V LPSGG +VID Sbjct: 729 AWETIRNYVEHVA-PDLLDRVERYVGTGDVFADYRIDEQLMKALDRKVWLPSGGYLVIDR 787 Query: 296 TEALTAIDINSARAT-RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVR 354 TEA+T ID+N+ + T GG++EET NLE+A+EI RQLRLRD+GG+IVIDFIDM Sbjct: 788 TEAMTVIDVNTGKFTGSGGNLEETVTRNNLESAEEIVRQLRLRDIGGIIVIDFIDMVLES 847 Query: 355 HQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 ++ V RL E + +DR R Q++ ++ GL++M+R+R+ L E+ C C G G + Sbjct: 848 NRELVLRRLTECLSRDRTRHQVAEVTSLGLVQMTRKRVGTGLLEAFSTTCEHCKGRGVI 906 >UniRef50_C0XRI1 Ribonuclease E (Fragment) n=2 Tax=Corynebacterium RepID=C0XRI1_9CORY Length = 743 Score = 276 bits (705), Expect = 4e-72, Method: Compositional matrix adjust. Identities = 153/386 (39%), Positives = 234/386 (60%), Gaps = 18/386 (4%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQ 98 NIY G++ + PS+EAAF+D G R+G L E+ ++ A R I+ L+ G Sbjct: 277 GNIYLGRVQNVLPSMEAAFIDIGQNRNGVLYAGEV--DWKAAGLGGRSR-RIEQALKSGD 333 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASL 158 +V+VQ+ K+ G+KGA LTT ISLAG YLV +P R+ GISR++ +R LKE LA + Sbjct: 334 QVMVQVTKDPVGHKGARLTTQISLAGRYLVYVPGG-RSAGISRKLPAPERKRLKEILAKV 392 Query: 159 ELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAE----SRPA-PFLIHQESNV 213 +P G I+RTA G S EA+ D++ WE +++ AE S+ A P +++E N+ Sbjct: 393 -VPGKGGAIIRTAAEGVSEEAIAADVTRLHNQWETLQEQAEREKSSKGAKPVTLYEEPNL 451 Query: 214 IVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYT-----GEIPLFSH 268 +V+ RD +D ++++D + +++++ PD ++ Y G+ F Sbjct: 452 LVKVVRDLFNEDFSKLIVDGKRPWNTVHAYVSSVA-PDLEDRLVRYDRAAHDGQ-DAFEA 509 Query: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT-RGGDIEETAFNTNLEAA 327 Y+++ QI+ A R V LPSGG++VID TEA+T ID+N+ + T GG +EET NLEAA Sbjct: 510 YRVDEQIQKALSRTVWLPSGGTLVIDRTEAMTVIDVNTGKFTGSGGSLEETVTRNNLEAA 569 Query: 328 DEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEM 387 +EI RQ+RLRD+GG+I++DFIDM +Q V RL+EA+ +DR R Q+S ++ GL++M Sbjct: 570 EEIVRQMRLRDIGGMIIVDFIDMILPENQELVLRRLKEALGRDRTRHQVSEVTSLGLVQM 629 Query: 388 SRQRLSPSLGESSHHVCPRCSGTGTV 413 +R+RL L E+ C C G G + Sbjct: 630 TRKRLGTGLLETFSTPCECCGGRGII 655 >UniRef50_C7Q8B4 Ribonuclease, Rne/Rng family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q8B4_CATAD Length = 1334 Score = 275 bits (704), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 146/382 (38%), Positives = 233/382 (60%), Gaps = 17/382 (4%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPN----IKDVL 94 N+Y GK+ + PS+EAAFVD G R+ L E+ N+ A G I+ VL Sbjct: 719 GNVYLGKVQNVLPSMEAAFVDIGKGRNAVLYAGEV-------NFEAAGITGQAKRIESVL 771 Query: 95 REGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEA 154 + GQ V+ Q+ K+ G+KGA LT+ ISL G YLV +P G ISR++ ++R LK Sbjct: 772 KSGQAVLTQVTKDPIGHKGARLTSQISLPGRYLVYVPEGTMTG-ISRKLPENERNRLKTI 830 Query: 155 LASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESR--PAPFLIHQESN 212 L ++ +PE G+IVRTA G + + L+ D+ WE I++ A++ AP L++ E + Sbjct: 831 LKAV-VPEHAGVIVRTAAEGATEDELRRDVERLSAQWEEIQRKAKTSAGSAPTLLYGEPD 889 Query: 213 VIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIE 272 + VR RD +D ++++ + + R+++ + PD + +++ +T E +F+ ++++ Sbjct: 890 LTVRVVRDIFNEDFSKLVVSGDQAWDTIREYVGGVA-PDLAPRLERWTSEQDIFAVHRVD 948 Query: 273 SQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT-RGGDIEETAFNTNLEAADEIA 331 Q+ A R+V LPSGGS+VID TEA+ ID+N+ + T GG++EET N+EAA+EI Sbjct: 949 EQLAKALDRKVWLPSGGSLVIDRTEAMVVIDVNTGKFTGSGGNLEETVTRNNIEAAEEIV 1008 Query: 332 RQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQR 391 RQLRLRDLGG+IVIDFIDM ++ V RL E + +DR + Q++ ++ GL++M+R+R Sbjct: 1009 RQLRLRDLGGIIVIDFIDMVLESNRDLVMRRLLECLGRDRTKHQVAEVTSLGLIQMTRKR 1068 Query: 392 LSPSLGESSHHVCPRCSGTGTV 413 + L E+ C +C+G G + Sbjct: 1069 VGQGLLEAFSETCDKCNGRGVL 1090 >UniRef50_D1BDM1 Ribonuclease, Rne/Rng family n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BDM1_SANKS Length = 1265 Score = 275 bits (702), Expect = 9e-72, Method: Compositional matrix adjust. Identities = 144/384 (37%), Positives = 226/384 (58%), Gaps = 15/384 (3%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPN----IKDVL 94 N+Y G++ + PS+EAAF+D G R+ L E+ N+ A G I+ L Sbjct: 723 GNVYLGRVQNVLPSMEAAFIDVGKGRNAVLYAGEV-------NWDAAGMEGQPRRIEQAL 775 Query: 95 REGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEA 154 + G V+VQ+ K+ G KGA LT+ ++LAG YLV +P G ISR++ +R LK+ Sbjct: 776 KSGDSVLVQVTKDPIGQKGARLTSQVTLAGRYLVYVPGGGMTG-ISRKLPDTERARLKKI 834 Query: 155 LASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVI 214 L + +PE G+IVRTA G S E L+ D++ WEAI+K +++ AP L+ E ++ Sbjct: 835 LREV-VPETAGVIVRTAAEGASEEELRADIARLQGQWEAIEKKSKTASAPALLQGEPDLA 893 Query: 215 VRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQ 274 +R RD D + + +++ AL PD + ++K +T + +F+ +I+ Q Sbjct: 894 IRVVRDIFNDDFTSLTVSGDGAWSEISEYVNALA-PDLAERVKRWTSDKDVFAEARIDEQ 952 Query: 275 IESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT-RGGDIEETAFNTNLEAADEIARQ 333 + R+V LPSGGS+VID TEA+T +D+N+ + T GG +EET NLEAA+EI RQ Sbjct: 953 LAKGMDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFTGSGGTLEETVTRNNLEAAEEIVRQ 1012 Query: 334 LRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLS 393 LRLRD+GG+IV+DFIDM ++ V R+ E + +DR + Q++ ++ GL++M+R+R+ Sbjct: 1013 LRLRDIGGIIVVDFIDMVLESNRDLVLRRMVECLGRDRTKHQVAEVTSLGLVQMTRKRVG 1072 Query: 394 PSLGESSHHVCPRCSGTGTVRDNE 417 L E+ C C+G G + +E Sbjct: 1073 QGLVEAFSETCDHCNGRGFIVHDE 1096 >UniRef50_A6GBN9 Ribonuclease G n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GBN9_9DELT Length = 507 Score = 275 bits (702), Expect = 1e-71, Method: Compositional matrix adjust. Identities = 176/471 (37%), Positives = 267/471 (56%), Gaps = 19/471 (4%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 ++INA E RVAL++ L +L IE N+YKGKI R+ P ++AAFVD G + Sbjct: 6 IVINA-DGPETRVALIENGILTELFIERERERGIVGNVYKGKILRVLPGMQAAFVDIGED 64 Query: 64 RHGFLPLKEIAREYFPA----NYSAHGRP-------NIKDVLREGQEVIVQIDKEERGNK 112 + FL +IA + P +G P NI D++ GQE++VQ+ K+ K Sbjct: 65 KAAFLYAGDIASQK-PGEKVDKVDKNGVPKRGGKVSNIADLVHPGQEILVQVVKDPISTK 123 Query: 113 GAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAG 172 GA +TT+ISL G +V MP G ISRRI + + L P+G G IVRT Sbjct: 124 GARITTYISLPGRNVVFMPTVSHVG-ISRRINSERQRRRLRRLVDEMRPKGSGFIVRTVA 182 Query: 173 VGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILID 232 S+ ++ + + ++ W IK AP L++++ ++++R RD L D +++D Sbjct: 183 RHASSAQVRAGMDYLIRLWANIKANERLHRAPVLLYRDLDLMLRVVRDNLSPDYARVIVD 242 Query: 233 NPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIV 292 + E ++ A P+++ +I+L++G +F Y IE +I+ A +R+V L SGGS+V Sbjct: 243 DRAAYERLKRFADAF-LPEYADRIELFSGRQGIFDSYGIELEIDRALERKVELKSGGSLV 301 Query: 293 IDSTEALTAIDINSAR--ATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDM 350 D EALTAID+N+ + ++G +E+T TNLEAADEIA QLRLR++GGLI+IDFIDM Sbjct: 302 FDQGEALTAIDVNTGKFVGSKGKTLEQTITQTNLEAADEIAEQLRLRNVGGLIIIDFIDM 361 Query: 351 TPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGT 410 ++R V RL++A+R+DRA+ I+ IS GL+EMSR+R SL C C G Sbjct: 362 DRESNRRKVYRRLQDALRRDRAKAHITKISEMGLVEMSRKRTRESLERRLAITCEVCGGK 421 Query: 411 GTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLN-EKRSAVN 460 G + ++ ILR I E + EV ++ P + L+N +RSA++ Sbjct: 422 GYHKSPSTICYEILRQIRREG-EHLAGEVISVTAHPDVAELMNGAERSALD 471 >UniRef50_A4AGL0 Ribonuclease G n=3 Tax=Actinobacteria (class) RepID=A4AGL0_9ACTN Length = 944 Score = 274 bits (700), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 147/417 (35%), Positives = 246/417 (58%), Gaps = 8/417 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R+++ ++ + +++A+++ L + + N+Y G++ + PS+EAAFVD Sbjct: 285 VDRVMVVRSKFDRIQIAVLEDGVLVEHYVAKAQDASLIGNVYLGRVQNVLPSMEAAFVDI 344 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPN---IKDVLREGQEVIVQIDKEERGNKGAALT 117 G R+ L E+ + N SA G+P I+ L+ G V+VQ+ K+ G+KGA LT Sbjct: 345 GRGRNAVLYSGEVDWDAAAEN-SADGKPQARRIELALKPGDRVLVQVTKDPVGHKGARLT 403 Query: 118 TFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSA 177 + +SL G YLV +PN +G ISR++ +R+ LK+ L + LPE +G+IVRTA G + Sbjct: 404 SQVSLPGRYLVYVPNGSMSG-ISRKLPDTERSRLKKILKGV-LPENVGVIVRTAAEGATE 461 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 E L D+S W I + AP L+H E +++++ RD +D +++I+ Sbjct: 462 EQLTLDVSRLTNQWADISAQVDKVQAPALLHSEPDLLIKIIRDVFNEDFHKLVIEGDDAR 521 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 + ++ ++ PD +++ + + F +++ QIE A R+V LPSGGS+VID TE Sbjct: 522 KTIENYVRSVA-PDLLDRLQPHESTVDSFEEFRVSEQIEKALDRKVWLPSGGSLVIDRTE 580 Query: 298 ALTAIDINSAR-ATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 A+T +D+N+ + GG++EET N+EAA+EI RQLRLRD+GG+IV+DFIDM ++ Sbjct: 581 AMTVVDVNTGKFVGSGGNLEETVTKNNVEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNR 640 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 V RL E + +DR + Q++ ++ GL++M+R++L L E+ C C+G G V Sbjct: 641 DLVLRRLVECLSRDRTKHQVAEVTSLGLVQMTRKKLGLGLLETFSENCEVCAGRGVV 697 >UniRef50_A5EVP9 Ribonuclease g n=16 Tax=Gammaproteobacteria RepID=A5EVP9_DICNV Length = 496 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 159/428 (37%), Positives = 241/428 (56%), Gaps = 6/428 (1%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 +L+N T E RVAL++ L+D+ IE NIYKGK+ R+ P +EAAF+D G E Sbjct: 18 ILVNHTPYET-RVALLEDGLLHDVLIERERRRGIVGNIYKGKVQRVLPGMEAAFIDIGLE 76 Query: 64 RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLA 123 R GFL +K I+ P I ++L EG+ ++VQ+ K+ G KGA LTT IS++ Sbjct: 77 RAGFLHMKNIS---LPTEMVGK-EQKISEILHEGESILVQVLKDPIGTKGARLTTEISIS 132 Query: 124 GSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWD 183 +LV +P + G + + R L+E + + G IVRTA A++ D Sbjct: 133 SRFLVFLPKSHDIGVSIKIVSETQRQNLREMMHEFHRGQEGGFIVRTAIETADFWAMRAD 192 Query: 184 LSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQH 243 + + + W++I A LI+ + + R RDY+ + ++++D+P+ A Sbjct: 193 MQYLHRVWDSILTTYRESYASTLIYGDLPLYQRVLRDYISPQVKQVIVDDPEAYR-AMAQ 251 Query: 244 IAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAID 303 A + + +I LY G+ LF Y +E +IE A +R V L SGG ++ID TEA+T ID Sbjct: 252 FAGNFLIEMADRITLYDGDRTLFDRYGVEEEIERALKRRVDLKSGGYLMIDQTEAMTTID 311 Query: 304 INSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL 363 +N+ E+T F TNLEAA IARQLR+R+LGG+I++DFIDMT HQ++V + L Sbjct: 312 VNTGGFVGKSSQEDTIFKTNLEAAKAIARQLRIRNLGGIIMLDFIDMTSTEHQQSVVDAL 371 Query: 364 REAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSI 423 A+ D+++ IS IS G++EM+R+R SL + CPRCSG G V+ E++ + Sbjct: 372 LNALAGDKSKYTISPISPLGIIEMTRKRTRESLKQVMCETCPRCSGRGYVKTTETIVYEL 431 Query: 424 LRLIEEEA 431 R + EA Sbjct: 432 FRDLMREA 439 >UniRef50_C8W5Q7 Ribonuclease, Rne/Rng family n=11 Tax=Bacteria RepID=C8W5Q7_DESAS Length = 564 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 166/429 (38%), Positives = 254/429 (59%), Gaps = 18/429 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 +K +++N + EE RVA+++ + ++ IE +++ + NI+KGK+ + P ++AAFVD Sbjct: 2 LKEIVVNVGE-EETRVAVLEDKVTVEIYIERAINQRLEGNIFKGKVENVLPGMQAAFVDI 60 Query: 61 GAERHGFLPLKEIAREYFP--ANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 G +++ FL +++ P S NI DVL++GQ+++VQI KE G KG +TT Sbjct: 61 GLDKNAFLYVEDALPSRNPEENRNSLDLCANIGDVLKQGQDLVVQIVKEPIGTKGPRITT 120 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSA 177 I+L G YLVLMP GISRRI + +R LKE A ++ P MGLIVRT G S Sbjct: 121 HITLPGRYLVLMPTVDYI-GISRRIADEQERERLKELAARVK-PRDMGLIVRTVAEGVSE 178 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDN---- 233 E L D++ K W I + P P L+H++ ++ R RD +D+ ++ID+ Sbjct: 179 EELAQDVNVLAKLWRKIINRSNHGPVPNLLHRDLELVHRILRDIFTEDVDRLIIDSRYEY 238 Query: 234 PKVLELARQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIV 292 +VLEL L D KIK+ E LF Y IE ++E A +R+V L GG +V Sbjct: 239 ERVLEL-------LDIIDPQLKIKVSVDERENLFEEYGIEMELEKAVKRKVWLKCGGYLV 291 Query: 293 IDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTP 352 ID EALTAID+N+ + ++E+T TNL+AA EIARQLRLR++GG+I++DFIDM Sbjct: 292 IDQAEALTAIDVNTGKFVGSTNLEDTVLRTNLDAALEIARQLRLRNIGGIIIVDFIDMLE 351 Query: 353 VRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGT 412 H++ V L + +++D+ + + I++ GL+EM+R+++ PSL E CP C G G Sbjct: 352 DEHRQKVLEVLEKEIKKDKTKTNLLGITQLGLVEMTRKKVRPSLSEMLQKPCPYCEGRGK 411 Query: 413 VRDNESLSL 421 V E++ + Sbjct: 412 VLSEETVGI 420 >UniRef50_B2KEH9 Ribonuclease, Rne/Rng family n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KEH9_ELUMP Length = 483 Score = 272 bits (696), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 151/420 (35%), Positives = 247/420 (58%), Gaps = 14/420 (3%) Query: 9 TQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFL 68 T EE RVA+V+ RL +L E G NIYK + + P + +AFV+ G E++ +L Sbjct: 16 TSFEETRVAIVENGRLAELMWERRGAVNIVGNIYKATVENVLPGISSAFVNIGYEKNAYL 75 Query: 69 PLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLV 128 + ++ + NI+ V+++GQE++VQ+ K+ G KG +T ++L G +LV Sbjct: 76 YISDVL---------GDEKKNIEKVIKKGQEIMVQVVKDAIGTKGMKITMDVTLPGRFLV 126 Query: 129 LMPNNPRAGGISRRIEGD-DRTELKEALASL--ELPEGMGLIVRTAGVGKSAEALQWDLS 185 L P+ G +S+ IE + +R +L + + L + GMG IVRT + + L+ ++ Sbjct: 127 LTPHQSFVG-VSKNIEDNQERHKLNDMVQELAEKYLHGMGCIVRTEAEEATKDELEREVK 185 Query: 186 FRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIA 245 + + W++I E+ P+P ++H++ + +++ RD L ++I +DN K E ++ Sbjct: 186 YLYRQWQSILNKFETLPSPSILHEDMDAVLQVSRDILSENIEVYYLDNKKDYENVLDFVS 245 Query: 246 ALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDIN 305 P+ KIKLY G+ P+F + IES+I++ + ++ LP+GGSI+I E+L AID+N Sbjct: 246 K-NSPELKDKIKLYKGKTPIFEAFNIESEIDNLRKTKISLPNGGSIIIQEAESLCAIDVN 304 Query: 306 SARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLRE 365 + + T EET TN+EAA E+A QLRLR++GG++VIDFIDM ++ V L + Sbjct: 305 TGKFTGSKSQEETVTQTNIEAAQEVAHQLRLRNIGGIVVIDFIDMKKASNRHRVVEALAD 364 Query: 366 AVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILR 425 AV +DRA+I+I I+R GL+EM+R+R S G CP+C G+G V ES+ + I R Sbjct: 365 AVHRDRAKIRILPITRLGLVEMTRERKKESTGSLLTEECPQCHGSGRVLSAESMRIKIQR 424 >UniRef50_D0WNB8 Putative S1 RNA binding domain protein n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WNB8_9ACTO Length = 940 Score = 272 bits (696), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 153/381 (40%), Positives = 229/381 (60%), Gaps = 16/381 (4%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSA---HGRPN-IKDVL 94 N+Y G++ + PS+EAAFVD G R+ L E+ N+ A GRP I+ L Sbjct: 365 GNVYLGRVQNVLPSMEAAFVDIGKGRNAVLYAGEV-------NWEAAGLEGRPRRIEQAL 417 Query: 95 REGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEA 154 + G V+VQ+ K+ G+KGA LT I+LAG +LVL+P+ G ISR++ +R LK Sbjct: 418 KSGDTVVVQVTKDPIGHKGARLTAQITLAGRHLVLVPSGAMTG-ISRKLPDKERQRLKRL 476 Query: 155 LASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIK-KAAESRPAPFLIHQESNV 213 L + +P G+IVRTA G S + L+ D+ K W+ I+ KA ++ AP L+ E + Sbjct: 477 LREI-VPAEHGVIVRTAAEGTSEDQLRADVERLAKTWQDIQTKAKNTKGAPMLLKGEPEL 535 Query: 214 IVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIES 273 VR RD +D + I K +++A L P+ S +++ +TG +F+ ++++ Sbjct: 536 AVRVVRDIFNEDFQSLKIQGAKAWRTISEYVAEL-SPELSQRLEHWTGASDIFASHRVDE 594 Query: 274 QIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATR-GGDIEETAFNTNLEAADEIAR 332 Q+ AF R+V LPSGG++VID TEA+T ID+N+ + T GG +EET NLEAA+EI R Sbjct: 595 QLAKAFDRKVWLPSGGTLVIDRTEAMTVIDVNTGKFTGAGGTLEETVTRNNLEAAEEIVR 654 Query: 333 QLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRL 392 QLRLRD+GG+IVIDFIDM ++ V RL E + +DR R Q++ ++ GL++M+R+R+ Sbjct: 655 QLRLRDIGGIIVIDFIDMVLEANRELVLRRLVECLGRDRTRHQVAEVTSLGLVQMTRKRV 714 Query: 393 SPSLGESSHHVCPRCSGTGTV 413 L E+ VC C G G + Sbjct: 715 GQGLVEAFSTVCEACEGRGYI 735 >UniRef50_A7C082 Ribonuclease G and E n=1 Tax=Beggiatoa sp. PS RepID=A7C082_9GAMM Length = 518 Score = 271 bits (694), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 182/522 (34%), Positives = 273/522 (52%), Gaps = 61/522 (11%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 +LIN T +E RVA+++ L ++ IE +NIYKG++ R+ P ++AAFV+ G E Sbjct: 5 VLINVTSRET-RVAMIENGILQEVIIERTSKRGLVSNIYKGRVCRVLPGMQAAFVEIGLE 63 Query: 64 RHGFLPLKEIAREYF-----PANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 R FL L +I + PAN I ++L EG+ ++VQ+ K+ G KGA LT Sbjct: 64 RAAFLHLSDIINTHLQAGIEPAN-------QIDELLHEGKTLLVQVIKDPLGTKGARLTA 116 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEG--------------------DDRTELKEA---- 154 IS+ Y+VL+P +P GIS RIE D TE K+ Sbjct: 117 QISIPSRYVVLLPYSPNMIGISTRIESPEERQRLKDIALQHTGMVEQDKLTETKDNNETV 176 Query: 155 --------LASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIK-KAAESRPAPF 205 S+E + G I+RT L D+ F + W I+ K + +P Sbjct: 177 MMHAVSSPKTSVESGKNYGFILRTVAEEAEENFLCADMDFLCRLWTDIQEKETKVKPCS- 235 Query: 206 LIHQESNVIVRAFRDYLRQDIGEILID----NPKVLELARQHIAALGRPDFSSKIKLYTG 261 L++++ ++++R RD I +I ID + +V+ A++ I PD I+ YTG Sbjct: 236 LVYRDLSLVLRTIRDLSGSSIDKIKIDSRDTHHQVVNFAKKFI-----PDLVPHIEHYTG 290 Query: 262 EIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFN 321 E PLF Y I+ +I A + +V L SGG +VID TEA+T ID+N+ ++EET F Sbjct: 291 ERPLFDLYSIDDEINKALEPKVPLKSGGYLVIDQTEAMTTIDVNTGGYVGSRNLEETIFR 350 Query: 322 TNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISR 381 TNLEAA IARQLRLR+LGG+I++DFIDM HQR V L + + +DR + IS IS+ Sbjct: 351 TNLEAAQAIARQLRLRNLGGIIILDFIDMKDEEHQRQVLRTLEKCLERDRTKSYISEISQ 410 Query: 382 FGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHA 441 GL+EM+R+R SL + CP C G GT++ E++ I R I + TQ+ Sbjct: 411 LGLVEMTRKRTRESLEHTLCRTCPTCRGRGTIKTAETVCYDIFRDIVRFTQQFETQKFLV 470 Query: 442 IVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPH 483 + I +L ++ ++V +E + + C I Q+ET + Sbjct: 471 LASQKIVDTMLEDESNSVLELE---ESIGCSI--RFQVETSY 507 >UniRef50_A0JXK2 Ribonuclease, Rne/Rng family n=4 Tax=Actinomycetales RepID=A0JXK2_ARTS2 Length = 1113 Score = 271 bits (694), Expect = 9e-71, Method: Compositional matrix adjust. Identities = 149/420 (35%), Positives = 241/420 (57%), Gaps = 9/420 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R +I + + +++ +++ L + + + N+Y GK+ + PS+EAAFVD Sbjct: 381 VDRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDI 440 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + N R I++ L+ G V+VQ+ K+ G+KGA LT+ I Sbjct: 441 GRGRNAVLYAGEV--NWDAVNLEGKQR-RIENALKSGDSVLVQVTKDPVGHKGARLTSQI 497 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLV +P G ISR++ +R LK L LPE G+IVRTA G S E L Sbjct: 498 SLPGRYLVYVPGGSMTG-ISRKLPDVERNRLKRILKD-RLPEDAGVIVRTAAEGASEEEL 555 Query: 181 QWDLSFRLKHWEAIKKAAESRP--APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 D++ WE I+ A S AP L++ E ++ ++ RD +D ++++ + + Sbjct: 556 THDINRLRAQWEGIESQATSTKILAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGEEAWD 615 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 ++ + PD +++ +T + +F+ ++I+ QI A R+V LPSGGS+VID TEA Sbjct: 616 TIEAYVTYVA-PDLVGRLEKWTKDTDIFAAWRIDEQIHKALDRKVFLPSGGSLVIDRTEA 674 Query: 299 LTAIDINSARAT-RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 +T +D+N+ + T GG++EET NLEAA+E+ RQLRLRD+GG+IVIDFIDM ++ Sbjct: 675 MTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRD 734 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V R+ E + +DR + Q++ ++ GL++M+R+R+ L E C C+G G V +E Sbjct: 735 LVLRRMVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEACAGRGIVTHDE 794 >UniRef50_UPI0001BC2E10 putative ribonuclease n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2E10 Length = 1076 Score = 269 bits (687), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 150/382 (39%), Positives = 226/382 (59%), Gaps = 17/382 (4%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPN----IKDVL 94 N+Y GK+ + PS+EAAF+D G R+ L E+ N+ A G I+ L Sbjct: 473 GNVYLGKVQNVLPSMEAAFIDIGKGRNAVLYAGEV-------NWDALGMDGKARRIEVAL 525 Query: 95 REGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEA 154 G V+VQ+ K+ G+KGA LT+ ISL G +LV +P N G ISR++ +R LK+ Sbjct: 526 SPGDAVLVQVTKDPIGHKGARLTSQISLPGRFLVYVPGNSMTG-ISRKLPDVERNRLKKL 584 Query: 155 LASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRP--APFLIHQESN 212 L L + + G+IVRTA G S + L D+ K WE I+K ++S AP L++ E + Sbjct: 585 LKEL-VGDSNGVIVRTAAEGASDKELSTDVERLAKRWETIEKKSKSTKVLAPQLLYSEPD 643 Query: 213 VIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIE 272 +IVR RD +D ++ID +++ A+ PD ++ Y+ + +F HY++E Sbjct: 644 MIVRIIRDVFNEDFSSLVIDGDGAWNTIHEYVEAVA-PDLLDRVHRYSEDEDIFDHYRVE 702 Query: 273 SQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT-RGGDIEETAFNTNLEAADEIA 331 Q++ A QR V LPSGGS+VID TEA+T ID+N+ + T GG++EET NLEAA+E+ Sbjct: 703 EQVQKALQRTVNLPSGGSLVIDRTEAMTVIDVNTGKFTGSGGNLEETVTRNNLEAAEEVI 762 Query: 332 RQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQR 391 RQ+RLRD+GG+IV+DFIDM ++ V RL E + +DR + Q++ ++ GL++M+R+R Sbjct: 763 RQVRLRDIGGIIVVDFIDMVLESNRDLVVRRLVECLGRDRTKHQVAEVTSLGLVQMTRKR 822 Query: 392 LSPSLGESSHHVCPRCSGTGTV 413 + L ES SG G + Sbjct: 823 IGTGLAESLVSAGADLSGRGLL 844 >UniRef50_D1BV45 Ribonuclease, Rne/Rng family n=2 Tax=Actinomycetales RepID=D1BV45_XYLCX Length = 1043 Score = 267 bits (683), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 146/379 (38%), Positives = 219/379 (57%), Gaps = 10/379 (2%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPN-IKDVLREG 97 N+Y G++ + PS+EAAFVD G R+ L E+ + A G+P I+ L+ G Sbjct: 589 GNVYLGRVQNVLPSMEAAFVDVGKGRNAVLYAGEV---NWDAAGLDGGQPRRIEQALKSG 645 Query: 98 QEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALAS 157 V+VQ+ K+ G+KGA LT+ ++LAG YLVL+P G ISR++ +R LK+ L Sbjct: 646 DSVLVQVTKDPIGHKGARLTSQVTLAGRYLVLVPGGGMTG-ISRKLPDVERNRLKKVLRD 704 Query: 158 LELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAI--KKAAESRPAPFLIHQESNVIV 215 + +PEG G+IVRTA G S E L+ D+ W I K S AP L+ E ++ + Sbjct: 705 I-VPEGAGVIVRTAAEGASEEELRADVERLQNQWTGITTKAGRASTSAPALLQGEPDLAI 763 Query: 216 RAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQI 275 R RD D +++ + ++ L PD ++ +T +FS ++++ Q+ Sbjct: 764 RVVRDIFNDDFSSLIVQGDGAWQEVAGYVEELA-PDLRERVTSWTENTDVFSVHRVDEQL 822 Query: 276 ESAFQREVRLPSGGSIVIDSTEALTAIDINSARATR-GGDIEETAFNTNLEAADEIARQL 334 R+V LPSGGS+VID TEA+T ID+N+ + T GG +EET NLEAA+EI RQL Sbjct: 823 AKGMDRKVWLPSGGSLVIDRTEAMTVIDVNTGKFTGAGGTLEETVTRNNLEAAEEIVRQL 882 Query: 335 RLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSP 394 RLRD+GG+IVIDFIDM ++ V RL E + +DR + Q++ ++ GL++M+R+R+ Sbjct: 883 RLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRVGQ 942 Query: 395 SLGESSHHVCPRCSGTGTV 413 L E+ C C G G + Sbjct: 943 GLVEAFSETCEHCKGRGFI 961 >UniRef50_A8MHL2 Ribonuclease, Rne/Rng family n=2 Tax=Alkaliphilus RepID=A8MHL2_ALKOO Length = 501 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 161/421 (38%), Positives = 263/421 (62%), Gaps = 6/421 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M +++++ E R+A+++ + L +L IE +++ NIYKG++ + P ++AAFVD Sbjct: 1 MNQIIVDVGISEN-RLAILEDEELVELYIERRNNKRIVGNIYKGRVVNVLPGMQAAFVDI 59 Query: 61 GAERHGFLPLKE-IAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G E++ FL +K+ + +EYF +IKDV+++GQE+IVQ+ KE +KGA +TT Sbjct: 60 GLEKNCFLYVKDALGQEYFNKKDFVDREISIKDVVKQGQEIIVQVIKEPIADKGARVTTN 119 Query: 120 ISLAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAE 178 I+L G YLVLMP+ G+SR+I ++R LK + +L+ PE MG+I+RT GKS + Sbjct: 120 ITLPGRYLVLMPDTQYI-GVSRKIGSAEERERLKAEIEALK-PENMGVILRTVAEGKSKD 177 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 + D+ F LK W+ I+K + AP LI+++ ++I + RD ++I E +I++ + Sbjct: 178 DFREDIKFLLKLWQKIEKEKKLGFAPRLIYKDFDLIDKTIRDTFSKNIHEFIINDENEYK 237 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 A + L P+ ++ + +F HY+IESQI A +R++ L SGG IVIDSTEA Sbjct: 238 SAMDLVELLS-PNLKDRLSYFEESHDIFRHYKIESQIHKALERKIWLKSGGYIVIDSTEA 296 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 LT +D+N+ + D+E+T TNLEAA EIA+QLRLRD+GG+I+IDFIDM+ ++ Sbjct: 297 LTVVDVNTGKYVGITDLEDTVLKTNLEAAVEIAKQLRLRDIGGIIIIDFIDMSNEEDEQK 356 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 V N L +++ +DR + +I ++ GL+EM+R+++ L C C G+G + + + Sbjct: 357 VLNLLEKSLNKDRTKSKILGMTELGLVEMTRKKVRQKLESVMQKKCHCCDGSGKLLNEYT 416 Query: 419 L 419 L Sbjct: 417 L 417 >UniRef50_B8HA23 Ribonuclease, Rne/Rng family n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HA23_ARTCA Length = 1151 Score = 266 bits (681), Expect = 3e-69, Method: Compositional matrix adjust. Identities = 148/416 (35%), Positives = 240/416 (57%), Gaps = 9/416 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R +I + + +++ +++ L + + + N+Y GK+ + PS+EAAFVD Sbjct: 431 VDRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDI 490 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ E N R I++ L+ G V+VQ+ K+ G+KGA LT+ I Sbjct: 491 GRGRNAVLYAGEVNWEAV--NLEGKQR-RIENALKSGDTVLVQVTKDPVGHKGARLTSQI 547 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLV +P G ISR++ +R LK L LPE G+IVRTA G S E L Sbjct: 548 SLPGRYLVYVPGGSMTG-ISRKLPDVERNRLKRILKD-RLPEQAGVIVRTAAEGASEEEL 605 Query: 181 QWDLSFRLKHWEAIKKAAESRP--APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 D++ WE I+ + S AP L++ E ++ ++ RD +D ++++ + + Sbjct: 606 THDINRLRAQWEGIESQSSSTKVLAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGEEAWD 665 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 ++ + PD +++ +T + +F+ ++I+ QI A +R+V LPSGGS+VID TEA Sbjct: 666 TIEAYVTYVA-PDLVGRLEKWTKDQDIFAAWRIDEQIHKALERKVFLPSGGSLVIDRTEA 724 Query: 299 LTAIDINSARAT-RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 +T +D+N+ + T GG++EET NLEAA+E+ RQLRLRD+GG+IVIDFIDM ++ Sbjct: 725 MTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRD 784 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 V R+ E + +DR + Q++ ++ GL++M+R+R+ L E C C+G G V Sbjct: 785 LVLRRMVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEACAGRGVV 840 >UniRef50_B2GGD5 Putative ribonuclease n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GGD5_KOCRD Length = 1145 Score = 266 bits (679), Expect = 4e-69, Method: Compositional matrix adjust. Identities = 148/416 (35%), Positives = 243/416 (58%), Gaps = 9/416 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 ++R ++ +++ +++ +++ L + + + N+Y GK+ + PS+EAAFVD Sbjct: 330 VERTMLVRQKEDRIQIGVLEDGILAEHFVSHTTQDSLIGNVYVGKVQNVLPSMEAAFVDI 389 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + A H I++ L+ G V+VQ+ K+ G+KGA LT+ + Sbjct: 390 GRGRNAVLYAGEV---DWDAAEMGHKPRKIENALKSGDTVLVQVTKDPVGHKGARLTSQV 446 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLV +P G ISR++ +R LK+ L LPEG G+IVRTA G S L Sbjct: 447 SLPGRYLVYVPGGSMTG-ISRKLPDVERQRLKKILKD-RLPEGAGVIVRTAAEGASETEL 504 Query: 181 QWDLSFRLKHWEAIKKAAESRP--APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 D++ WE I++ A S AP L++ E ++ ++ RD +D +++ + + Sbjct: 505 TNDINRLRSQWEQIQEKAGSTKTLAPELLYAEPDLTIKTVRDVFNEDFTAMVVQGEQAWD 564 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 ++ + PD +++ +T + LF H ++E QI+ A +R+V LPSGGS+VID TEA Sbjct: 565 NIEAYVTYVA-PDLLDRLQRWTEDEDLFEHMRVEEQIQKALERKVFLPSGGSLVIDRTEA 623 Query: 299 LTAIDINSARAT-RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 +T +D+N+ + T GG++EET NLEAA+EI RQLRLRD+GG+IV+DFIDM ++ Sbjct: 624 MTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRD 683 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 V RL E + +DR + Q++ ++ GL++M+R+R+ L E C C+G G + Sbjct: 684 LVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFSEPCEECAGRGVL 739 >UniRef50_C2KPN3 Ribonuclease G n=3 Tax=Actinomycetaceae RepID=C2KPN3_9ACTO Length = 817 Score = 265 bits (676), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 148/377 (39%), Positives = 226/377 (59%), Gaps = 8/377 (2%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQ 98 N+Y GK+ + S+EAAFVD G R+ L E+ + N S GR I++ L G Sbjct: 267 GNVYLGKVQNVLSSMEAAFVDIGKGRNAVLYAGEVNWDAAGLN-SKTGR--IEEALSPGD 323 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASL 158 V+VQ+ K+ G+KGA LT+ I+LAG +LVL+P+ G ISR++ ++R LK L ++ Sbjct: 324 MVLVQVTKDPIGHKGARLTSQITLAGRHLVLVPSGAMTG-ISRKLPEEERKRLKTVLKTM 382 Query: 159 ELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAI-KKAAESRPAPFLIHQESNVIVRA 217 +P G G+IVRTA G + E L+ D+ +K WE I KK A R +P L+H E + VR Sbjct: 383 -IPAGFGVIVRTAAEGATEEQLRVDVERLVKIWEDIEKKRARPRNSPQLLHAEPELAVRV 441 Query: 218 FRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIES 277 RD +DI + I + +++ L P+ ++ + + +F+ ++I+ Q+ Sbjct: 442 VRDIFNEDISSLTIQGEEAWHTISKYVKELS-PELGERLHFWEDDSDVFAAHRIDEQLAK 500 Query: 278 AFQREVRLPSGGSIVIDSTEALTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRL 336 F+R+V LPSGG ++ID TEA+T ID+N+ R GG +EET NLEAA+EI RQLRL Sbjct: 501 GFERKVWLPSGGYLIIDRTEAMTVIDVNTGRYIGAGGTLEETVTKNNLEAAEEIVRQLRL 560 Query: 337 RDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSL 396 RD+GG++VIDF+DM ++ V RL E + +DR R Q++ ++ GL++M+R+R+ L Sbjct: 561 RDIGGIVVIDFVDMVIESNRDLVLRRLVECLGRDRTRHQVTEVTSLGLVQMTRKRVGQGL 620 Query: 397 GESSHHVCPRCSGTGTV 413 E+ C C G G + Sbjct: 621 VEAFSTQCECCDGRGFI 637 >UniRef50_C0VZF1 Ribonuclease E n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VZF1_9ACTO Length = 819 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 152/416 (36%), Positives = 242/416 (58%), Gaps = 10/416 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 +KR +I Q ++A+++ L + + + NIY G++ + PS+EAAFVD Sbjct: 181 VKREMIVREQNGLNQIAVLEDGLLVEHYVARRTQQTMVGNIYLGRVQNVLPSMEAAFVDL 240 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPN-IKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G R+ L E+ E GRP I+ L+ G V+VQ+ K+ G+KGA LT+ Sbjct: 241 GKGRNAVLYAGEVNWEAV----GLAGRPRRIEQALKSGDTVLVQVTKDPIGHKGARLTSQ 296 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 I+LAG YLVL+P + GISR++ +RT LK+ L+ + +P+ G+IVRTA G + E Sbjct: 297 ITLAGRYLVLVPAG-QMTGISRKLPERERTRLKKLLSKI-VPKDYGVIVRTAAEGATEEQ 354 Query: 180 LQWDLSFRLKHWEAI-KKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 L+ D++ WE I KK +++ P L+ E + VR RD +D + + + + Sbjct: 355 LRDDVTRLQAQWEEIEKKQKKTQKVPVLLRSEPELAVRVVRDVFTEDFQSLTVQGEETWQ 414 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 ++++ L PD +++ + + +F+ ++I+ Q+ R+V LPSGGS+VID TEA Sbjct: 415 TVQEYVDELA-PDLRDRLRRWVNKEDVFTVHRIDEQLTKGMDRKVWLPSGGSLVIDRTEA 473 Query: 299 LTAIDINSARAT-RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 +T ID+N+ + GG +EET NLEAA+EI RQLRLRD+GG++VIDF+DM ++ Sbjct: 474 MTVIDVNTGKFIGSGGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVLESNRD 533 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 V RL E + +DR R Q++ I+ GL++M+R+R+ L E+ C C G G + Sbjct: 534 LVLRRLVECLGRDRTRHQVTEITSLGLVQMTRKRVGEGLVEAFSTPCECCDGRGFI 589 >UniRef50_C7QYR2 Ribonuclease, Rne/Rng family n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7QYR2_JONDD Length = 1018 Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 149/378 (39%), Positives = 223/378 (58%), Gaps = 15/378 (3%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHG---RPN-IKDVL 94 N+Y G++ + PS+EAAFVD G R+ L E+ N+ HG +P I++ L Sbjct: 484 GNVYLGRVQNVLPSMEAAFVDIGKGRNAVLYAGEV-------NWDVHGIEGQPRRIEEAL 536 Query: 95 REGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEA 154 + G V+VQ+ K+ G+KGA LT+ I+LAG YLV +P G ISR++ +R LK Sbjct: 537 KSGDSVLVQVTKDPIGHKGARLTSQITLAGRYLVYVPGGGMTG-ISRKLPDTERARLKRI 595 Query: 155 LASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVI 214 L L + EG G+IVRTA G S L+ D+ K W AI+K ++ AP L+ E ++ Sbjct: 596 LKEL-VDEGSGVIVRTAAEGASETELRADVERLKKQWAAIEKKRKNANAPALLQGEPDLA 654 Query: 215 VRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQ 274 +R RD D ++ + + +++ L PD ++K+ +T E +F+ +I+ Q Sbjct: 655 IRVVRDIFNDDFTQLSVQGDQAWGEISEYVGDLA-PDLANKMSRWTSEDDIFAAARIDEQ 713 Query: 275 IESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGD-IEETAFNTNLEAADEIARQ 333 + R+V LPSGGS+VID TEA+T ID+N+ + T G +EET NLEAA+EI RQ Sbjct: 714 LAKGLDRKVYLPSGGSLVIDRTEAMTVIDVNTGKFTGTGGTLEETVTRNNLEAAEEIVRQ 773 Query: 334 LRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLS 393 LRLRD+GG+IVIDFIDM ++ V RL E + +DR + Q++ ++ GL++M+R+R+ Sbjct: 774 LRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRVG 833 Query: 394 PSLGESSHHVCPRCSGTG 411 L E+ C CSG G Sbjct: 834 QGLIEAFSTACDHCSGRG 851 >UniRef50_C8XF15 Ribonuclease, Rne/Rng family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XF15_NAKMY Length = 1080 Score = 264 bits (674), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 154/412 (37%), Positives = 241/412 (58%), Gaps = 14/412 (3%) Query: 10 QQEEL-RVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFL 68 Q+ EL +VAL++ L + + G + +++ GK+ + PS+EAAFVD G R+ + Sbjct: 374 QRGELAQVALLEDGILVEHFVSQTGADSLIGSVFLGKVQNVLPSMEAAFVDIGRGRNAVI 433 Query: 69 PLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLV 128 E+ + A R I+ L G ++ Q+ K+ G+KGA LTT ISL G +LV Sbjct: 434 YAGEV--NWDAAGLGGKAR-RIESALSSGDTILAQVSKDPVGHKGARLTTQISLPGRFLV 490 Query: 129 LMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRL 188 +P A GISR++ +R LK L + +PE G+I+RTA G S E L D+ Sbjct: 491 YVPGG-GATGISRKLPDTERKRLKAILDRI-VPEDAGVIIRTAAEGVSEEELARDVERLK 548 Query: 189 KHWEAIKKAAESR-PAPFLIHQESNVIVRAFRDYLRQDIGEILID----NPKVLELARQH 243 WE I + A+++ AP L++ E +++ RD DI +++D N V + Sbjct: 549 AQWEEISRRAQAKGSAPTLLYAEPGTLIKVVRDLFNSDINRLVVDGDAGNDTVWGPVSDY 608 Query: 244 IAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAI 302 + A+ P+ + ++ + + +F++Y+I+ QI A +R+V LPSGGS+VID TEA+T + Sbjct: 609 VNAVA-PELADRLVRWDHDGQDVFANYRIDEQIAKALERKVHLPSGGSLVIDRTEAMTVV 667 Query: 303 DINSARAT-RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVEN 361 D+N+ + T GG++EET NLEAA+EI RQLRLRD+GG+IV+DFIDM ++ V Sbjct: 668 DVNTGKYTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRELVMR 727 Query: 362 RLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 RL EA+ +DR R Q++ ++ GL++M+R+R+ L E+ CP C G G V Sbjct: 728 RLTEALGRDRTRHQVAEVTSLGLVQMTRKRMGTGLVEAFSEPCPHCGGRGIV 779 >UniRef50_C9KMZ9 Ribonuclease G n=2 Tax=Veillonellaceae RepID=C9KMZ9_9FIRM Length = 480 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 155/447 (34%), Positives = 245/447 (54%), Gaps = 18/447 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK +++N +E L DG+ L +++E H NIYKG++ + P ++AAFVD Sbjct: 1 MKSIIVNMVPEETCMALLEDGE-LQAVEMERSSHSHLVGNIYKGRVQNVLPGMQAAFVDI 59 Query: 61 GAERHGFLPLKEI----AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL 116 G ++ FL + + E P N H GQ + +QI K+ G KG Sbjct: 60 GTGKNAFLYIGDGLPHETIESMPQNARIH----------IGQSLPIQIVKDAIGTKGPRA 109 Query: 117 TTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKS 176 T ISL G +VLMP G +SRRIE + A+A P+GMGLI+RT G+S Sbjct: 110 TMHISLPGRNVVLMPTAAYIG-MSRRIEDEGERARLHAIAERICPKGMGLIIRTVAAGQS 168 Query: 177 AEALQWDLSFRLKHWEAIKKAAESRP-APFLIHQESNVIVRAFRDYLRQDIGEILIDNPK 235 ++L D+ + ++ WE+I + R L+++++++I+R RD DI E++IDN + Sbjct: 169 EQSLAADVRYLVRLWESILARYKMRTKGSALLYRDADLIIRLVRDRFTADIDELVIDNEE 228 Query: 236 VLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDS 295 + R + A P+ +I+ Y + P+F Y IE +IE REV L SGG +VID Sbjct: 229 AYQRVRSLVEA-NSPELVDRIRFYEAKTPIFKAYHIEEEIEKLGAREVELKSGGFLVIDK 287 Query: 296 TEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRH 355 TEALT ID+N+ + ++ +T + TNLEAA EI +Q+RLRD+GG+I++DFIDM Sbjct: 288 TEALTVIDVNTGKYVGKTNLGDTVYQTNLEAAAEILKQIRLRDIGGIIIVDFIDMEKESQ 347 Query: 356 QRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRD 415 + + +RE V+ DR + I I+ GL+E++R++ ++ + CP C G G + Sbjct: 348 KEELLTYMREQVKHDRTKTNIVDITSLGLVEITRKKTRQNIDSIVYSECPICHGRGRIES 407 Query: 416 NESLSLSILRLIEEEALKENTQEVHAI 442 E++++ I R I K + +E + I Sbjct: 408 PETVAIRISRDIRRMERKSHAREGYEI 434 >UniRef50_D2SCS1 Ribonuclease, Rne/Rng family n=39 Tax=Bacteria RepID=D2SCS1_9ACTO Length = 1048 Score = 263 bits (672), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 142/377 (37%), Positives = 225/377 (59%), Gaps = 8/377 (2%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQ 98 N+Y G++ + PS+EAAF+D G R+ L E+ + A S R +I+ L+ G Sbjct: 422 GNVYLGRVQNVLPSMEAAFIDIGKGRNAVLYAGEV--NWDAAGLSGKQR-SIEQALKSGD 478 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASL 158 +V+VQ+ K+ G+KGA LT ++L G +LV +P G ISR++ +R LK+ L + Sbjct: 479 KVLVQVTKDPIGHKGARLTQQVNLPGRFLVYVPGGSMTG-ISRKLPDTERQRLKDVLKKI 537 Query: 159 ELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRP-APFLIHQESNVIVRA 217 +PE G+I+RTA G S E L D++ W+ I++ AES AP L++ E ++ +R Sbjct: 538 -VPEDAGVIIRTAAEGASEEELTRDVNRLQAQWDVIQRKAESSSNAPSLLYGEPDLAIRV 596 Query: 218 FRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIES 277 RD +D E+++ + ++A + P+ ++ +TGE +F +I+ Q+ Sbjct: 597 IRDVFNEDFKELVVQGDDAWDTVEAYVAHV-SPELVGRLTRHTGEGDVFRDLRIDEQLAK 655 Query: 278 AFQREVRLPSGGSIVIDSTEALTAIDINSARAT-RGGDIEETAFNTNLEAADEIARQLRL 336 A R+V LPSGGS+VID TEA+T +D+N+ + T GG++E+T N+EAA+EI RQLRL Sbjct: 656 ALDRKVWLPSGGSLVIDRTEAMTVVDVNTGKFTGSGGNLEQTVTRNNMEAAEEIVRQLRL 715 Query: 337 RDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSL 396 RD+GG+IVIDFIDM ++ V RL E + +DR + Q++ ++ GL++M+R+R+ L Sbjct: 716 RDIGGIIVIDFIDMVLESNRDLVLRRLTECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGL 775 Query: 397 GESSHHVCPRCSGTGTV 413 E C C G G V Sbjct: 776 LEVFSEPCEHCRGRGVV 792 >UniRef50_C3W9J7 Ribonuclease G and E n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3W9J7_FUSMR Length = 488 Score = 262 bits (670), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 165/448 (36%), Positives = 260/448 (58%), Gaps = 8/448 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M +++IN + + R A+++ +++ ++ IE + ANIYKGK+ + P +E+AFV+ Sbjct: 1 MNQIVINIDEFQS-RAAIIEDEKVVEVLIEREEERRINANIYKGKVANVLPGMESAFVNI 59 Query: 61 GAERHGFL---PLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALT 117 G E++ FL L+E +Y ++ RP I+D+L G EV+VQ+ E RG KGA +T Sbjct: 60 GLEKNAFLYVNDLREFEEKYLDGICNSE-RP-IEDILTVGDEVVVQVLSEPRGTKGARVT 117 Query: 118 TFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSA 177 T ++ G YLVLMPNN IS++I+ ++ E + PE MG+I+RTA GKS Sbjct: 118 THYTIPGKYLVLMPNNNHI-AISKKIKEEEERNRLEEIVRDLKPENMGVIIRTAAQGKSI 176 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 + ++ + +K WE I+K + ++++++ ++ RD +I E++IDN +V Sbjct: 177 FHFEREMEYLVKKWEDIEKKTSTAKIGEVLYKDNGIVATVLRDIFSNEIDELVIDNEEVY 236 Query: 238 ELARQHIAALGRPDFSSKIKLYT-GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDST 296 +I A +KIKLY EI +F Y IE +IE+A + EVRL GG +VI T Sbjct: 237 WEVIDYINAFSEKTLKTKIKLYNDDEIGIFERYGIEKEIENALKEEVRLECGGYLVIQKT 296 Query: 297 EALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 EAL +ID+N+ + T ++E+T NTNLEAA EI RQLRLR+LGG+I+IDFIDM + Sbjct: 297 EALISIDVNTGKNTGSYNLEQTVLNTNLEAAREIPRQLRLRNLGGIIIIDFIDMRLEEDK 356 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDN 416 V L + + +DR + I H + GL+EM+R+R L CP C GTG ++ Sbjct: 357 LKVLEALEQNLSKDRIKNNIVHFTDLGLIEMTRKRTGKPLYNYFQERCPMCEGTGKIKSK 416 Query: 417 ESLSLSILRLIEEEALKENTQEVHAIVP 444 +S+ ++ I+E A E+ + I+ Sbjct: 417 DSVIHEMMTEIKECAKDEDINIIKVILS 444 >UniRef50_A6WDN2 Ribonuclease, Rne/Rng family n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WDN2_KINRD Length = 1244 Score = 262 bits (670), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 145/367 (39%), Positives = 222/367 (60%), Gaps = 19/367 (5%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSA---HGRPN-IKDVL 94 N+Y G++ + PS+EAAF+D G R+ L E+ N+ A G+P I+ L Sbjct: 770 GNVYLGRVQNVLPSMEAAFIDVGKGRNAVLYAGEV-------NWDAAGLEGQPRRIEAAL 822 Query: 95 REGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEA 154 + G V+VQ+ K+ G+KGA LT+ +SL G YLV +P G ISR++ +R LK+ Sbjct: 823 KSGDPVLVQVTKDPVGHKGARLTSQVSLPGRYLVYVPRGSMTG-ISRKLPDTERARLKKV 881 Query: 155 LASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVI 214 L + +PEG G+IVRTA G + E L D+ WEAI+ A S+ AP L+H E ++ Sbjct: 882 LKQV-VPEGAGVIVRTAAEGVAEEELAADVQRLQATWEAIQAKASSKNAPVLLHGEPDLT 940 Query: 215 VRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIP----LFSHYQ 270 VR RD +D +++I + E R ++ + PD + +++ + G +F+H++ Sbjct: 941 VRVVRDVFNEDFTKLVISGDEAWETVRGYVDDVA-PDLAERLERWDGGAGGAEDVFAHHR 999 Query: 271 IESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATR-GGDIEETAFNTNLEAADE 329 I+ Q++ A R+V LPSGGS+VID TEA+ +D+N+ + T GG +EET NLEAA+E Sbjct: 1000 IDEQLQKALGRKVWLPSGGSLVIDPTEAMHVVDVNTGKFTGAGGTLEETVTRNNLEAAEE 1059 Query: 330 IARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSR 389 I RQLRLRD+GG+IVIDFIDM ++ V RL E + +DR + Q++ ++ GL++M+R Sbjct: 1060 IVRQLRLRDIGGIIVIDFIDMVLESNRDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTR 1119 Query: 390 QRLSPSL 396 +R L Sbjct: 1120 KRTGQGL 1126 >UniRef50_C3PI06 Ribonuclease E n=3 Tax=Corynebacterium RepID=C3PI06_CORA7 Length = 1062 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 148/409 (36%), Positives = 236/409 (57%), Gaps = 18/409 (4%) Query: 16 VALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAR 75 V +++ L + + + H + NIY G++ + PS+EAAFVD G R+G L +I Sbjct: 370 VGVLEDDLLVEHFVTTETHPSQIGNIYLGRVQNVLPSMEAAFVDIGQGRNGVLYAGDI-- 427 Query: 76 EYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPR 135 ++ R +++ L+ G +V+VQ+ K+ G+KGA LTT ISLAG +LV +P R Sbjct: 428 DWRALGIGGRSR-KVENALKSGDQVLVQVAKDPIGHKGARLTTQISLAGRFLVYVPGG-R 485 Query: 136 AGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIK 195 + GISR++ +R LK L + +P G I+RTA S E + D++ WE I Sbjct: 486 SAGISRKLPAPERKRLKGILERV-IPGDGGAIIRTAAENVSEEDIASDVNRLHSLWEDIS 544 Query: 196 KAAESRPA-----PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 A A P +++E +++++ RD +D +++D + ++ ++ Sbjct: 545 ARAAHEKATKGAKPVTLYEEPDLLIKVVRDLFNEDFSTLVVDGKRSYNTVSAYVDSMAH- 603 Query: 251 DFSSKIKLYT-----GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDIN 305 D + ++ Y GE FS Y+I+ Q++ A R+V LPSGG++VID TEA+T ID+N Sbjct: 604 DLADRVVRYDAREHDGE-DAFSAYRIDEQLQKALGRKVWLPSGGTLVIDRTEAMTVIDVN 662 Query: 306 SARAT-RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLR 364 + + T GG++EET NLEAA+EI RQ+RLRD+GG+IV+DFIDM +Q V RL+ Sbjct: 663 TGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLPENQDLVLRRLK 722 Query: 365 EAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 EA+ +DR R Q+S ++ GL++M+R+R+ L E+ C C G G + Sbjct: 723 EALGRDRTRHQVSEVTSLGLVQMTRKRVGTGLIETFSTECEACHGRGII 771 >UniRef50_A4XJ17 Ribonuclease G n=7 Tax=Clostridia RepID=A4XJ17_CALS8 Length = 571 Score = 261 bits (667), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 165/421 (39%), Positives = 251/421 (59%), Gaps = 13/421 (3%) Query: 13 ELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKE 72 E RVA+++ + L ++ IE + NIYKG + I P ++AAFV+ G +++ FL L + Sbjct: 13 ETRVAVLEDKELVEIYIERNDQQSIVGNIYKGVVENILPGMDAAFVNIGQDKNAFLYLGD 72 Query: 73 IAREYFPAN---YSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129 I R F Y P LR GQE++VQ+ KE KG +TT I+L G YLVL Sbjct: 73 INRLEFGDTDEYYEIKTNPL---ALRCGQEIVVQVIKEAYDQKGPRVTTNITLPGRYLVL 129 Query: 130 MPNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRL 188 +PN GIS+RIE ++RT LKE ++ P+GMGLIVRTA GKS E L+ +L F Sbjct: 130 LPNTDYI-GISKRIEFEEERTRLKEIACKIK-PDGMGLIVRTAAEGKSEEVLRNELEFLR 187 Query: 189 KHWEAIK-KAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAAL 247 W+ I+ K+ ES AP L++++ +++ +A RD + +I++ K + ++ Sbjct: 188 NLWQKIRQKSKES--APVLLYKDYDLVFKAVRDMFTNQVDRFVINDRKKYNKIIEFLSTY 245 Query: 248 GRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSA 307 P SK++ + +F ++QIE ++ A + + L SGG IVID TEALT ID+N+ Sbjct: 246 A-PSLKSKVEYFNLATNIFEYFQIEQKLSKALSKRIWLKSGGYIVIDETEALTVIDVNTG 304 Query: 308 RATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAV 367 + D+ ET TNLEAA EIARQ+RLRD+GG+I+IDFIDM HQ+ V + L+EA+ Sbjct: 305 KFVGKNDVSETILKTNLEAAVEIARQIRLRDIGGIIIIDFIDMKNPEHQKLVLDALKEAL 364 Query: 368 RQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLI 427 ++D+ + + I+ GL+EM+R+++ L CP C G+G + E++ L +L+ I Sbjct: 365 KRDKTKTVVVGITPLGLVEMTRKKVRQRLSCIMQSCCPYCEGSGKILSPETVGLKVLKEI 424 Query: 428 E 428 E Sbjct: 425 E 425 >UniRef50_D0LAJ7 Ribonuclease, Rne/Rng family n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LAJ7_GORB4 Length = 1123 Score = 260 bits (665), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 146/388 (37%), Positives = 225/388 (57%), Gaps = 21/388 (5%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQ 98 NIY G++ + P +EAAFVD G R+G L E+ + A R I+ L+ G Sbjct: 537 GNIYLGRVQNVLPGMEAAFVDIGRGRNGVLYAGEV--NWDAAGLDGGSR-KIEQALKPGD 593 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASL 158 V+VQ+ K+ G+KGA LTT ISLAG YLV +P G ISR++ +R LK+ LA L Sbjct: 594 NVLVQVSKDPVGHKGARLTTQISLAGRYLVYVPGGSSTG-ISRKLPDVERKRLKQILAKL 652 Query: 159 ELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIK------KAAESRPAPFLIHQESN 212 +P G+I+RTA G SAE L D++ W +I K P +++E + Sbjct: 653 -VPADAGVIIRTASEGVSAEELGADIARLEAKWRSIDESVTQAKKNSGSAGPKALYEEPD 711 Query: 213 VIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIP------LF 266 ++VR RD +D +++++ K L ++ ++ PD +++ + E P F Sbjct: 712 LLVRVVRDLFNEDFKKLVVEGAKAWNLVEGYVGSVA-PDLMDRVEKF--EKPHADAPDSF 768 Query: 267 SHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT-RGGDIEETAFNTNLE 325 ++I+ Q+ A R+V LPSGG+++I+ TEA+T +D+N+ + T GG++EET NLE Sbjct: 769 VVHRIDEQLAKALDRKVWLPSGGTLIIEHTEAMTVVDVNTGKFTGSGGNLEETVTRNNLE 828 Query: 326 AADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLL 385 AA+EI RQ+RLRD+GG+I++DFIDM ++ V RL EA+ +DR R Q+S ++ GL+ Sbjct: 829 AAEEIVRQMRLRDIGGMIIVDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLV 888 Query: 386 EMSRQRLSPSLGESSHHVCPRCSGTGTV 413 +M+R+RL L E+ C C G G + Sbjct: 889 QMTRKRLGTGLLEAFSTTCTTCGGRGVI 916 >UniRef50_Q83MU7 Ribonuclease G n=2 Tax=Tropheryma whipplei RepID=Q83MU7_TROWT Length = 549 Score = 260 bits (665), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 149/411 (36%), Positives = 239/411 (58%), Gaps = 15/411 (3%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 ML+ + +++V +++ L + + NIY G++ + P +EAAFVD G Sbjct: 68 MLVRGSGASDVQVGILEEGILVEYYMARGASSSLVGNIYMGRVQNVLPGMEAAFVDIGCG 127 Query: 64 RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLA 123 R+ L E E A +I++ +REG V+VQ+ K+ NKG +T +SLA Sbjct: 128 RNAVLYSGEAVWEGVKAQ-------SIENTVREGSSVLVQVTKDAVANKGPRVTGQLSLA 180 Query: 124 GSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWD 183 G YLV P +GG+SRRI +R L+++L + + + LI+RTA VG ++E L D Sbjct: 181 GRYLVYAPG---SGGVSRRIAPSERARLQKSLKA-AVEDVSSLIIRTAAVGATSEQLGND 236 Query: 184 LSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQH 243 + + AIK+ +E+ AP +I+ E ++++R RD D E++++ ++ E + Sbjct: 237 AKMLCEAYRAIKEKSENATAPSIIYSEPDLLIRLLRDTFNNDFKELIVEGAELYERVNSY 296 Query: 244 IAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAID 303 + + P+ K+ + E LF Y+I QI+ + R+V LPSGGS+V+D TEA+T ID Sbjct: 297 LQDVS-PEMLGKVS-KSSEEDLFDAYRITEQIDRSLNRKVLLPSGGSLVVDHTEAMTVID 354 Query: 304 INSAR-ATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENR 362 +N+ + +E+T + NLEA DEI RQ+RLRDLGG++VIDFIDM ++ V NR Sbjct: 355 VNTGKFVGTSSSLEQTVTDNNLEAVDEIVRQIRLRDLGGIVVIDFIDMLLQENRDLVYNR 414 Query: 363 LREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 L EA+ DR+R +++ I+ GL++M+R++L +L E +C RCSG G V Sbjct: 415 LLEALSLDRSRHKVAEITSLGLVQMTRKKLGVAL-EPVSELCDRCSGRGRV 464 >UniRef50_C5CAZ2 Ribonuclease, Rne/Rng family n=1 Tax=Micrococcus luteus NCTC 2665 RepID=C5CAZ2_MICLC Length = 1091 Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 149/424 (35%), Positives = 243/424 (57%), Gaps = 24/424 (5%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 ++ML+ Q +++A+++ L + + + N+Y GK+ + PS+EAAFVD G Sbjct: 228 RKMLVRQRDQR-IQIAVLEDGVLAEHFVSHTTQDSMIGNVYLGKVQNVLPSMEAAFVDIG 286 Query: 62 AERHGFLPLKEIAREYFPANYSA---HGRP-NIKDVLREGQEVIVQIDKEERGNKGAALT 117 R+ L E+ N+ A G+P I++ L+ G V+VQ+ K+ G+KGA LT Sbjct: 287 RGRNAVLYAGEV-------NWDAAQLDGKPRKIENALKSGDTVLVQVTKDSVGHKGARLT 339 Query: 118 TFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSA 177 + +SL G YLV +P G ISR++ +R+ LK+ L LP+ G+IVRTA G S Sbjct: 340 SQVSLPGRYLVYVPGGSMTG-ISRKLPDVERSRLKKILKD-HLPQDAGVIVRTAAEGTSE 397 Query: 178 EALQWDLSFRLKHWEAIKKAAESRP--APFLIHQESNVIVRAFRDYLRQDIGEILIDNPK 235 + LQ D++ WE I++ A AP L++ E ++ ++ RD +D +L+ Sbjct: 398 QELQNDINRLRAQWEGIQEKASGTKVLAPELLYAEPDLTIKTVRDVFNEDFSAMLVQGEA 457 Query: 236 VLELARQHIAALGRPDFSSKIKLYT-----GEIPLFSHYQIESQIESAFQREVRLPSGGS 290 + ++ + P ++ + GE L++ ++++ Q+ A +R+V LPSGGS Sbjct: 458 TWDNIEAYVTYVA-PHLLGRLHHWVPEDHDGE-DLYATHRVDEQLHKALERKVYLPSGGS 515 Query: 291 IVIDSTEALTAIDINSARAT-RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFID 349 +VID TEA+T +D+N+ + T GG++EET NLEAA+EI RQLRLRD+GG+IVIDFID Sbjct: 516 LVIDRTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFID 575 Query: 350 MTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSG 409 M ++ V RL E + +DR + Q++ ++ GL++M+R+R+ L E C C+G Sbjct: 576 MVLEANRDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLVEVFSETCEHCAG 635 Query: 410 TGTV 413 G + Sbjct: 636 RGIL 639 >UniRef50_A0LIP4 RNAse G n=22 Tax=Bacteria RepID=A0LIP4_SYNFM Length = 530 Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 173/498 (34%), Positives = 273/498 (54%), Gaps = 46/498 (9%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 ++IN + E RVALV+ ++ +L IE NIYKG++ ++ P ++AAFVD E Sbjct: 5 LIINGSAFET-RVALVENGQVAELHIERSSDRGIAGNIYKGRVVKVLPGMQAAFVDIDLE 63 Query: 64 RHGFLPLKEI------AREYFPANYSAH------------GRPNIKDVL----------- 94 + FL + +I + + G P +DVL Sbjct: 64 KAAFLYVSDIHHPMGDVEQLLLSTCEVEPDVEKVDSAREPGAPEFQDVLDLQRYYSSVPI 123 Query: 95 ----REGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-DRT 149 +EGQE++VQ+ KE G+KGA +TT I+L G +LV MP G+SRRIE + +R Sbjct: 124 EERLQEGQEILVQVAKEPIGHKGARITTHITLPGRHLVFMPTMDHV-GVSRRIENEVERK 182 Query: 150 ELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQ 209 L+E + ++ P G IVRTA G E LQ ++ F +K W+ I++ ES P L++Q Sbjct: 183 RLREIMCEIK-PSHCGFIVRTAAEGAEPEKLQVEVDFLVKVWQNIQRRFESASVPSLVYQ 241 Query: 210 ESNVIVRAFRDYLRQDIGEILID----NPKVLELARQHIAALGRPDFSSKIKLYTGEIPL 265 E ++ +RA RD +++ ++ID + K+ + AL S I+LY G+ P+ Sbjct: 242 ELDITLRAVRDLFTKEVDRLVIDSRSEHKKITNFIETFLPAL-----QSSIELYEGDEPI 296 Query: 266 FSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLE 325 F Y IE +++ A +++ L SGG IVI+ TEALTA+D+N+ R ++EET TNLE Sbjct: 297 FDAYGIEMEVQRALSKKIWLKSGGYIVIEMTEALTAVDVNTGRYVGKRNLEETILKTNLE 356 Query: 326 AADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLL 385 A EIA QLRLR++GG+I+IDFIDM ++ V N L++A+ +D+++ I H+S GL+ Sbjct: 357 AVKEIAYQLRLRNIGGIIIIDFIDMEKESNREKVCNALKDAMHKDKSKTNILHMSELGLI 416 Query: 386 EMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPV 445 EM+R+R S+G+ C C G G ++ +++ ILR +E E Q + + Sbjct: 417 EMTRKRTRESIGQVLCEPCFYCEGEGYLKSRQTVCYEILRELEREKRDLYGQNIMVLAHP 476 Query: 446 PIASYLLNEKRSAVNAIE 463 +A+ +E R + +E Sbjct: 477 EVAARFCDEDRGPLERVE 494 >UniRef50_UPI0001C430FE cytosolic axial filament protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C430FE Length = 503 Score = 260 bits (664), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 157/482 (32%), Positives = 261/482 (54%), Gaps = 10/482 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M R + T E R A+V+ ++ +L +E P + N+Y G++ + P ++AAFVD Sbjct: 1 MNRKIYFNTATRERRAAIVENGQVVELLVERPAENRIVGNVYIGRVVNVLPGMQAAFVDI 60 Query: 61 GAERHGFLPLKEIAREYFPANYS-AHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G E++GFL ++ + + NI + + +GQE++VQ+ KE G KG L+ Sbjct: 61 GREKNGFLYRDDLLSFHLSEEADEVKKQRNITEFVTKGQELLVQVTKEGFGQKGPRLSGV 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 +S+ G Y V MP G +SRR+ ++ E + L E G+I+RT E Sbjct: 121 VSMPGKYTVYMPEGGYVG-VSRRMGTEEERERLRGIGEDLLKENEGMIIRTVCEDAKPEV 179 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 ++ DL F WE++ + + + AP LIHQ S++I + D+ I EI+ID+ Sbjct: 180 IEQDLHFLRTSWESVWQEGKEKRAPALIHQGSSLIEKMMLDFSLNQIDEIVIDDAD---- 235 Query: 240 ARQHIAALGRP--DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 Q + AL P D K++LY + +FS + I+ +++ A +R++ L +G +++D TE Sbjct: 236 DYQTLKALLAPYSDVHEKVRLYHDKENIFSVFGIDKELDKALRRQIWLKNGAYLIVDQTE 295 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 ALT ID+N+ + T D+++T TNLEAA EIARQLRLRD G+I+IDFIDM + Sbjct: 296 ALTVIDVNTGKFTGKTDLQDTVRKTNLEAAKEIARQLRLRDTSGIIIIDFIDMKREEDRE 355 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V + ++QDR + + ++ GL+EM+R+++ SL S CP C G+V +E Sbjct: 356 YVLEAFKRGLKQDRTKTNVVGLTGLGLVEMTRKKVRQSLQASLSKACPTCKEQGSVLSDE 415 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 + + I RLI E ++ + + +P +++ L K + +E G R +++PN Sbjct: 416 AQAYKIERLIWEYRGMDH-EAILIELPSAVSAVLAGPKGELLKQLE-EATGFRILLMPNK 473 Query: 478 QM 479 M Sbjct: 474 HM 475 >UniRef50_UPI0001C31D95 ribonuclease, Rne/Rng family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31D95 Length = 636 Score = 259 bits (663), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 154/420 (36%), Positives = 238/420 (56%), Gaps = 14/420 (3%) Query: 21 GQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYF-- 78 G R+ +L +E G+ NIYKGK+ + LEAAFVD G E++GFL + EI Sbjct: 45 GYRVAELYLERRGNRSIVGNIYKGKVDNVLAGLEAAFVDIGLEKNGFLHVDEIVIPGVET 104 Query: 79 PANYSAHGRPNIK--DVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRA 136 P G+ +K D+LR GQEV+VQ+ K+ KGA L+ +++ G Y+V P Sbjct: 105 PRRGRGQGKDGLKIHDLLRPGQEVVVQVVKDPLKTKGARLSMELTIPGRYMVYTPQGEGV 164 Query: 137 GGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKK 196 G +SRR+ +R L++ A L+L +G G I+RTA G E + ++ + K + + K Sbjct: 165 G-VSRRLPDKERDRLRKEAARLDL-QGGGAIIRTAAFGARREDFEREMQYLFKLNDVLAK 222 Query: 197 AAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGR--PDFSS 254 E AP L+ QE+++ +R RD ++D+ K + + ++ R P+ Sbjct: 223 RVEETQAPDLVFQEADLSIRVVRDVFSDHFERAVVDDQKQYQ---RLVSFFTRTAPELVD 279 Query: 255 KIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT---R 311 +++L+ E PLF + +E +I+ R V LPSGG ++ID EALT ID+N+ R Sbjct: 280 RVELWEEEAPLFERFGVEREIQGTLTRRVDLPSGGYLIIDYAEALTVIDVNTGSFIGRGR 339 Query: 312 GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDR 371 G +E+T TNLEAA+E RQLRLRD+GG+IVIDFIDM R++ AV LR+++ +DR Sbjct: 340 GARLEDTITRTNLEAAEEAVRQLRLRDIGGIIVIDFIDMARARNRDAVLKTLRKSLDEDR 399 Query: 372 ARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEA 431 + + IS GL+EM+RQ ++ + E CP C G G +R E++++ R + + A Sbjct: 400 TKTFVVEISPLGLVEMTRQNVTEGVREIMTRHCPTCGGEGVIRSEETIAIDFERRLRDIA 459 >UniRef50_C1A932 Ribonuclease G n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A932_GEMAT Length = 520 Score = 259 bits (661), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 159/442 (35%), Positives = 244/442 (55%), Gaps = 27/442 (6%) Query: 1 MKR-MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 MKR +L+NAT +E RVA+++ +L +L ++ P + ++Y GK+ + P ++AAFV+ Sbjct: 1 MKREILVNATPRET-RVAIIEDGQLVELLVDRPDARRMVGDVYLGKVEAVLPGIQAAFVN 59 Query: 60 YGAERHGFLPLKEIARE---------------------YFPANYSAHGRPNIKDVLREGQ 98 G E+ FL ++ E RP I+D+L+ GQ Sbjct: 60 IGTEKSAFLHAADVVVEDAQVSDDDDDDEDESGEESGGGGGRRGRREVRP-IQDLLKRGQ 118 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALAS 157 E++VQI KE KG +T +SLAG +LV MP + G+SR+I E +R L+ + Sbjct: 119 EILVQITKEPISTKGPRVTAQVSLAGRFLVYMPFASKV-GVSRKIDERSERQRLRAMVGE 177 Query: 158 LELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRA 217 + + G+IVRT + E + +L + +W+ IK+ + AP L+H+E+NV Sbjct: 178 MLPDDAGGVIVRTVSEDATKETFERELQTLINNWKRIKRKTQFTRAPSLVHRETNVTRGL 237 Query: 218 FRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIES 277 RD + + +D+ +V +++ + P+ ++KLY +PLF IE++I Sbjct: 238 VRDLFSAKVERVQVDSKQVYNEITEYLQGIA-PELVERVKLYEENVPLFDKEGIETEIRD 296 Query: 278 AFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLR 337 F+R LPSGG ++ + TEAL +ID+NS R T D E+T TN EAA EIARQLRLR Sbjct: 297 LFKRRCDLPSGGYLIFEPTEALVSIDVNSGRYTGKRDPEKTILKTNTEAAREIARQLRLR 356 Query: 338 DLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLG 397 D+GG+IV DFIDM ++ V + LR + +DRAR + +S GL+EM+RQR+ S Sbjct: 357 DVGGIIVCDFIDMETQSNRDKVLHELRTHLGRDRARTKAFAVSDLGLVEMTRQRVRQSHW 416 Query: 398 ESSHHVCPRCSGTGTVRDNESL 419 S CP CSGTG V E++ Sbjct: 417 HSMTEGCPTCSGTGRVFTPETI 438 >UniRef50_Q2S597 Ribonuclease, Rne/Rng family subfamily n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S597_SALRD Length = 596 Score = 258 bits (659), Expect = 8e-67, Method: Compositional matrix adjust. Identities = 144/429 (33%), Positives = 249/429 (58%), Gaps = 22/429 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + ++ E+ R+A+V+ +L +L IE+ H++ N+Y G+I ++ PS++AAFVD Sbjct: 1 MSKEIVFNVGNEQTRIAIVEDGKLVELYIENAEHKRTIGNLYLGQIRKVMPSIQAAFVDI 60 Query: 61 GAERHGFLPLKEIAREY-FPANYSAHGRPNIK----------------DVLREGQEVIVQ 103 G E+ FL +++ + ++ P ++ D+L GQ ++VQ Sbjct: 61 GQEQDAFLHFSDLSDNLPYLLDFLGLEAPTVEAIDVPKGKKDWDKRPSDLLNRGQTILVQ 120 Query: 104 IDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEG 163 + KE NKG+ ++T ISLAG +LVL+P +SR+I D+ E+LAS +P+G Sbjct: 121 VTKEPISNKGSRISTDISLAGRFLVLVPLQNYVA-VSRKITDDEERRRLESLASSLVPDG 179 Query: 164 MGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAP-FLIHQESNVIVRAFRDYL 222 +G+IVRT + A++L D+ ++ W ++K + +P+P L+H++ ++ RD Sbjct: 180 VGVIVRTVAQDRDAKSLDKDMKLLMERWRRVEKRLKDKPSPPELVHEDVDMASSIVRDEF 239 Query: 223 RQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQRE 282 ++ IL+D+ + + ++ A+G P +++L+ G+ P+F I+ + AF+ Sbjct: 240 SEEYDRILVDHEGLYSSIQSYVRAVG-PQLVDRVELHEGDQPVFESVGIQHGADRAFKDR 298 Query: 283 VRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGL 342 V LPSGG + I+ TEA+ +D+NS R+ +G E + N NLEAA IARQ+RLRDLGG+ Sbjct: 299 VELPSGGYLFIEKTEAMHVVDVNSGRSGKGKSQAENSLNVNLEAARVIARQIRLRDLGGI 358 Query: 343 IVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGE--SS 400 IV+DFID+ ++ V + +++ +DRA ++ +S FGL+E++RQRL PS+ SS Sbjct: 359 IVVDFIDLRDEDDKKKVYDEVKKGFEEDRAVTKVLPMSDFGLVEITRQRLRPSITTTFSS 418 Query: 401 HHVCPRCSG 409 + P G Sbjct: 419 ANGTPSDDG 427 >UniRef50_C5VAX0 Ribonuclease E n=5 Tax=Corynebacterium RepID=C5VAX0_9CORY Length = 929 Score = 258 bits (659), Expect = 9e-67, Method: Compositional matrix adjust. Identities = 150/409 (36%), Positives = 237/409 (57%), Gaps = 16/409 (3%) Query: 15 RVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIA 74 +V +++ L + + S NIY G++ + P++EAAF+D G R+G L E+ Sbjct: 307 QVGVLEDDMLVEHFVTSDTQSSLAGNIYLGRVQNVLPAMEAAFIDIGKGRNGVLYAGEV- 365 Query: 75 REYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNP 134 ++ AN R I+ L+ G +V+VQ+ K+ G KG LTT ISLAG YLV +P Sbjct: 366 -DWRAANLGGRHR-KIEQALKSGDQVLVQVAKDPIGQKGPRLTTQISLAGRYLVYVPGG- 422 Query: 135 RAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAI 194 ++ GISR++ +R LK L ++ +P +I+RTA G +A+ D++ WE I Sbjct: 423 KSAGISRKLPAPERKRLKAILKNV-VPADGSVIIRTAAEGVPEDAIAADVNRLHSLWEQI 481 Query: 195 K----KAAESRPA-PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGR 249 + K ES+ P +++E N++V+ RD +D +++D + +I ++ Sbjct: 482 QERTLKEKESKGTKPVTMYEEPNMLVKVVRDLFNEDFTSLVVDGNRAWNTVHAYIQSVA- 540 Query: 250 PDFSSKIKLYTGEI----PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDIN 305 PD +++ + E F +++ Q++ A R+V LPSGG++VID TEA+T ID+N Sbjct: 541 PDLLDRLEKFDREAHDGQDAFEALRVDEQLKKALSRKVWLPSGGTLVIDRTEAMTVIDVN 600 Query: 306 SARAT-RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLR 364 + + T GG++EET NLEAA+EI RQ+RLRDLGG+IV+DFIDM +Q V RL Sbjct: 601 TGKFTGSGGNLEETVTKNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRLT 660 Query: 365 EAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 EA+ +DR R QIS ++ GL++++R+RL L E+ C CSG G + Sbjct: 661 EALGRDRTRHQISEVTSLGLVQITRKRLGTGLLETFATECEECSGRGVL 709 >UniRef50_B8DVT8 Ribonuclease G n=7 Tax=Bifidobacterium RepID=B8DVT8_BIFA0 Length = 1028 Score = 258 bits (658), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 144/391 (36%), Positives = 229/391 (58%), Gaps = 22/391 (5%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSA---HGRPN-IKDVL 94 NIY G++ + PS+EAAFVD G R+G L E+ N+ A G+P I+ Sbjct: 514 GNIYLGRVQNVLPSMEAAFVDIGQARNGVLYAGEV-------NWDATRLEGQPRRIELAF 566 Query: 95 REGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEA 154 + G V+VQ+ K+ G+KGA LT+ ++LAG +LVL+P+ G +SR++ +R LK Sbjct: 567 KSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTG-VSRKLSDRERNRLKSI 625 Query: 155 LASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAES---RPAPFLIHQES 211 ++ + P+ MG+I+RTA G S EA+ DL W I++ E P L+ E Sbjct: 626 VSKI-APKDMGVIIRTAAEGASEEAIAKDLEGLTNQWAEIQRKREEFLHGKRPKLLQGEP 684 Query: 212 NVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYT----GEIPLFS 267 +V +R RD D +++++ V +++ + PD +K++ + G +F Sbjct: 685 DVAIRVVRDIFNDDFNKMIVEGDGVYHRIEEYLDHMA-PDLHNKLERWDPEEHGGKDVFD 743 Query: 268 HYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT-RGGDIEETAFNTNLEA 326 +QI+SQ+ +R+V LPSGGSIVID TEA+T ID+N+ R +G +EET NLEA Sbjct: 744 RWQIDSQLRKGMERQVYLPSGGSIVIDRTEAMTTIDVNTGRFIGKGKSLEETVTRCNLEA 803 Query: 327 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLE 386 ++EIARQLRLRD+GG+++ID++DM ++ V RL E + +DR + Q++ ++ GL++ Sbjct: 804 SEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLVECLARDRTKHQVAEVTSLGLVQ 863 Query: 387 MSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 M+R+R+ L E+ CP C G G + +E Sbjct: 864 MTRKRIGQGLVEAFSEECPECKGRGFIVHDE 894 >UniRef50_D2RC82 S1 RNA binding domain protein n=8 Tax=Bifidobacteriaceae RepID=D2RC82_GARVA Length = 1093 Score = 257 bits (657), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 147/392 (37%), Positives = 234/392 (59%), Gaps = 24/392 (6%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSA---HGRPN-IKDVL 94 NIY G+I + PS+EAAFVD G R+G L E+ N+ G+P I+ Sbjct: 556 GNIYLGRIQNVLPSMEAAFVDIGQARNGVLYAGEV-------NWDMARLEGQPRRIELAF 608 Query: 95 REGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEA 154 + G V+VQ+ K+ G+KGA LT+ ++LAG +LVL+P+ G +SR++ +R+ L+ A Sbjct: 609 KSGDPVLVQVTKDPIGHKGARLTSQVTLAGRFLVLVPSGGMTG-VSRKLSDRERSRLR-A 666 Query: 155 LASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESR---PAPFLIHQES 211 + S P+ MG+I+RTA G S E+++ DL +K WE I+ E P L+ E Sbjct: 667 IVSKIAPKDMGVIIRTAADGASEESIEKDLDSLVKQWERIEAKREEYLHGKRPKLLQGEP 726 Query: 212 NVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYT-----GEIPLF 266 +V +R RD D +++++ V + +++ + PD SK++ + G+ +F Sbjct: 727 DVAIRVVRDIFNDDFQKLIVEGEGVRQRIDEYLEMMA-PDLRSKVEYWDPAEHEGK-DVF 784 Query: 267 SHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT-RGGDIEETAFNTNLE 325 +QI+SQ+ +R+V LP+GGSIVID TEA+T ID+N+ R RG +EET NLE Sbjct: 785 DKWQIDSQLRKGMERQVYLPAGGSIVIDRTEAMTTIDVNTGRFIGRGKSLEETVTRCNLE 844 Query: 326 AADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLL 385 A++EIARQLRLRD+GG+++ID++DM ++ V RL E + +DR + Q++ ++ GL+ Sbjct: 845 ASEEIARQLRLRDIGGMVMIDYVDMVMPANRDLVLRRLLECLARDRTKHQVAEVTSLGLV 904 Query: 386 EMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 +M+R+R+ L E+ CP C G G + +E Sbjct: 905 QMTRKRVGQGLVEAFSEECPTCKGRGFILHDE 936 >UniRef50_C9RQU1 Ribonuclease, Rne/Rng family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQU1_FIBSS Length = 511 Score = 257 bits (656), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 164/473 (34%), Positives = 254/473 (53%), Gaps = 12/473 (2%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 +LI+ T E+ R+A+++ L +L +E + NIYKG + ++ P+L+AAF+D G E Sbjct: 9 ILISKTPYEK-RIAIMEDGELAELVVEGVSSNRVLGNIYKGVVQKVLPALKAAFIDIGLE 67 Query: 64 RHGFL------PLKEIAR---EYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGA 114 + GFL E+ R A +I ++L+EGQE++VQ+ KE KGA Sbjct: 68 KAGFLHQEDAMDRNELLRREYGDDDDEGDASKEISIDEILQEGQEIMVQVVKEPISTKGA 127 Query: 115 ALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVG 174 LTT +S AG +LV MP G R + R E K+ + L+ +G IVRT G+ Sbjct: 128 RLTTHLSFAGRFLVCMPGANFVGVSKRERDPVKRREFKKVVRRLK-GRDVGYIVRTNGLN 186 Query: 175 KSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNP 234 +S + + WE K E+ P I++ES+ I + R+Y + + IDN Sbjct: 187 ESEFEINKQMRELESKWEQTKYNFETMPPETCIYEESDSIEQTVREYFGDNTDYVYIDNR 246 Query: 235 KVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVID 294 R ++ L PD K+KL++ LF +++IE+ + QR+V LP GG++VI+ Sbjct: 247 DEYFALRDYLKVLS-PDKLDKVKLWSSSESLFEYFKIENDYARSLQRQVPLPRGGNLVIE 305 Query: 295 STEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVR 354 TEAL +ID+N+ G D + TNL+A EIA+QLRLRD+GGLI+IDFIDM Sbjct: 306 QTEALVSIDVNTGPKVHGKDQGKIILETNLDACHEIAKQLRLRDVGGLIIIDFIDMETDE 365 Query: 355 HQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVR 414 + AV R+A+R+D+A I + IS+FGL+E++R+R+ +L CP C+G+G + Sbjct: 366 DREAVYQEFRKAIRRDKAPISPAPISQFGLMEVTRKRVRVNLMTEKTECCPVCNGSGRIA 425 Query: 415 DNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQD 467 ES I R + K +EV +V P+ L + N +E + + Sbjct: 426 TLESTLGMIDRWLARAHTKGRLREVTLVVSAPVIDVLCKDLNRMFNYLEYKHN 478 >UniRef50_A0R152 Ribonuclease, Rne/Rng family protein n=9 Tax=Corynebacterineae RepID=A0R152_MYCS2 Length = 1037 Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 149/385 (38%), Positives = 224/385 (58%), Gaps = 16/385 (4%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQ 98 NIY G + + PS+EAAFVD G R+G L E+ E A R I+ L+ G Sbjct: 427 GNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEVNWE--AAGLGGQNR-KIEQALKPGD 483 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASL 158 V+VQ+ K+ G+KGA LTT +SLAG YLV +P + GISR++ +R LKE L + Sbjct: 484 YVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPG-ASSTGISRKLPDTERQRLKEILREV 542 Query: 159 ELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIK-KAAE----SRPAPFLIHQESNV 213 +P G+I+RTA G E ++ D+ K W I+ KAAE A +++E +V Sbjct: 543 -VPSDAGVIIRTASEGVKEEDIRSDVERLQKRWSEIEAKAAEVTEKKAGAAVALYEEPDV 601 Query: 214 IVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIP----LFSHY 269 +V+ RD +D +++ + ++ A+ PD ++ Y P +F+ + Sbjct: 602 LVKVIRDLFNEDFSSLIVSGDEAWNTINSYVEAVA-PDLMPRLTKYEPAGPDAPDVFAVH 660 Query: 270 QIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT-RGGDIEETAFNTNLEAAD 328 +I+ Q+ A R+V LPSGG++VID TEA+T +D+N+ + T GG++E+T NLEAA+ Sbjct: 661 RIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGSGGNLEQTVTRNNLEAAE 720 Query: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388 EI RQLRLRD+GG++VIDFIDM ++ V RL EA+ +DR R Q+S ++ GL++++ Sbjct: 721 EIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVTSLGLVQLT 780 Query: 389 RQRLSPSLGESSHHVCPRCSGTGTV 413 R+RL L E+ C C G G V Sbjct: 781 RKRLGTGLVEAFSTACTHCGGRGIV 805 >UniRef50_B2HMG4 Ribonuclease E Rne n=28 Tax=Mycobacterium RepID=B2HMG4_MYCMM Length = 1017 Score = 256 bits (655), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 147/393 (37%), Positives = 233/393 (59%), Gaps = 28/393 (7%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPN----IKDVL 94 NIY G + + PS+EAAFVD G R+G L E+ N+ A G I+ L Sbjct: 387 GNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV-------NWDAAGLGGADRKIEQAL 439 Query: 95 REGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEA 154 + G ++VQ+ K+ G+KGA LTT +SLAG YLV +P + GISR++ +R LKE Sbjct: 440 KPGDYIVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPG-ASSTGISRKLPDTERQRLKEI 498 Query: 155 LASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIK-KAAESR----PAPFLIHQ 209 L + +P G+I+RTA G + ++ D++ + W I+ KA E + A +++ Sbjct: 499 LREV-VPSDAGVIIRTASEGVKEDDIRADVTRLQERWNQIEAKAVEIKQKAAGAAVALYE 557 Query: 210 ESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYT------GEI 263 E +V+V+ RD +D +++ + ++++++ PD SK+ Y G++ Sbjct: 558 EPDVLVKVIRDLFNEDFAGLVVSGDDAWDTINEYVSSVA-PDLVSKLSKYEPAVGSEGQV 616 Query: 264 --PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT-RGGDIEETAF 320 +F+ ++I+ Q+ A R+V LPSGG++VID TEA+T +D+N+ + T GG++E+T Sbjct: 617 GPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVVDVNTGKFTGSGGNLEQTVT 676 Query: 321 NTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHIS 380 NLEAA+EI RQLRLRD+GG++VIDFIDM ++ V RL EA+ +DR R Q+S ++ Sbjct: 677 KNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRLTEALARDRTRHQVSEVT 736 Query: 381 RFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 GL++++R+RL L E+ CP CSG G + Sbjct: 737 SLGLVQLTRKRLGTGLVEAFSTSCPHCSGRGIL 769 >UniRef50_Q01YX3 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01YX3_SOLUE Length = 913 Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 140/340 (41%), Positives = 205/340 (60%), Gaps = 4/340 (1%) Query: 88 PNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDD 147 P+I D+L+EGQE+IVQI KE G KGA +T+ I+L G +LV MP G+SR+I DD Sbjct: 516 PSISDLLKEGQEIIVQIAKEPLGQKGARITSHIALPGRFLVYMPTVDHI-GVSRKIPSDD 574 Query: 148 -RTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFL 206 R LK L + G IVRTAG G++ E L+ D+ F W +++ AE R AP L Sbjct: 575 ERLRLKRILQTNRTGIPGGYIVRTAGDGRTEEELRADMMFLYNLWLDMRQKAERRAAPLL 634 Query: 207 IHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLF 266 IH + NV+ R RD L + +DN +V E + + +P +++K+YT P+F Sbjct: 635 IHHDLNVVERILRDQLTSSYKSVWVDNEEVYESVLRFVQRF-QPALVNRVKMYTRSTPIF 693 Query: 267 SHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT-RGGDIEETAFNTNLE 325 + I +++E A + +V L SGG IVI+ TEAL AIDIN+ + + +E+T TN + Sbjct: 694 DEFGITAELEKALRPKVWLKSGGYIVINQTEALVAIDINTGKYVGKSNRLEDTIVKTNTD 753 Query: 326 AADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLL 385 A EI RQ+RLRDLGG+IV+DFIDM ++++ V L EA+R DRA +I + FGL+ Sbjct: 754 AIKEIVRQIRLRDLGGIIVVDFIDMDERKNRQKVMQALEEAMRADRAPYKILQFNDFGLV 813 Query: 386 EMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILR 425 ++R+R+ SL + CP C G G V+ +++ IL+ Sbjct: 814 AITRKRVKQSLERTLCTPCPYCEGAGYVKSPQTVVGEILQ 853 Score = 45.4 bits (106), Expect = 0.011, Method: Compositional matrix adjust. Identities = 22/72 (30%), Positives = 44/72 (61%), Gaps = 1/72 (1%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K ++I+AT+ E RVA+++ ++ ++ + +I+KG++TR+ P +++AFVD G Sbjct: 3 KELIISATRHE-TRVAVIEEDQVVEIYHQRENEYSLAGSIHKGRVTRVLPGMQSAFVDIG 61 Query: 62 AERHGFLPLKEI 73 R FL + + Sbjct: 62 LGRDAFLYVSDF 73 >UniRef50_B8CXZ3 Ribonuclease, Rne/Rng family n=1 Tax=Halothermothrix orenii H 168 RepID=B8CXZ3_HALOH Length = 489 Score = 255 bits (651), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 172/459 (37%), Positives = 277/459 (60%), Gaps = 24/459 (5%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 +++IN+ +E+ R A++ L D+ IE +++ N+Y+ ++ + P ++AAFVD G Sbjct: 4 QIIINSGIKEK-RAAILMDNVLEDIVIELDSYKKIVGNVYRARVIDVLPGMQAAFVDIGY 62 Query: 63 ERHGFLPLKEIAREYFPA------NYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL 116 +++ FL + +I +P G+ I+ VL+ GQE++VQ+ KE KGA + Sbjct: 63 DKNAFLHVSDI----YPLLDEKQLKLKKEGKLGIQHVLQPGQELMVQVVKEPIYEKGAKV 118 Query: 117 TTFISLAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGK 175 T ISL G YLVL+P R ISR+I + D+R LK+ + L+ P+ MGLI+RT K Sbjct: 119 TCKISLPGRYLVLLPGEYRTA-ISRKIKDFDERDRLKKIVGKLKDPD-MGLIIRTNSRYK 176 Query: 176 SAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPK 235 A+ L+ D S+ + W IK+ + AP LI++ ++++ RDYL +D+ ++LID+ Sbjct: 177 KADLLELDYSYLKRTWTQIKENYNNSKAPDLIYEHASLLKTIVRDYLNKDVDKVLIDDES 236 Query: 236 ----VLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSI 291 +LEL+ + +A PD ++I LY ++P+F Y IE ++E A ++++ L SGG I Sbjct: 237 DYRVLLELS-EKLA----PDLKNRINLYNKKMPIFHVYGIEKELERAIRKKIWLDSGGFI 291 Query: 292 VIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMT 351 VI+ TEAL AID+N+ + T + T TNLEAA EIARQLRLRD+GG+I+IDFIDM Sbjct: 292 VIEQTEALVAIDVNTGKYTGKKNAARTILKTNLEAAREIARQLRLRDIGGIIIIDFIDMK 351 Query: 352 PVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTG 411 RHQ+ V + + +DR+ I +++ GLLEM+RQ++ LGE C C G G Sbjct: 352 ERRHQQEVLETFEKELAKDRSVTSIQGLTKLGLLEMTRQKVREGLGELMQKECSYCRGKG 411 Query: 412 TVRDNESLSLSILRLIE-EEALKENTQEVHAIVPVPIAS 449 + S++ SI+R I+ ++A +E ++ V P+ ++S Sbjct: 412 LILSANSVAESIIRNIQLKKASEEFSRAVVECHPLVVSS 450 >UniRef50_A6LDG7 Ribonuclease G n=21 Tax=Bacteria RepID=A6LDG7_PARD8 Length = 525 Score = 254 bits (649), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 155/468 (33%), Positives = 255/468 (54%), Gaps = 33/468 (7%) Query: 5 LINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAER 64 L+ Q +E+ +A+++ + L +L E+ +IY GK+ ++ P L AAF+D G ++ Sbjct: 5 LVVDVQPKEVSIAVLEDKSLVELQKEARNVSFAVGDIYLGKVKKLMPGLNAAFIDVGYKK 64 Query: 65 HGFLPLKEIA------REYFPANYS----------------AHGRPNIKDVLREGQEVIV 102 FL ++ ++Y S +I DVL+ GQEV+V Sbjct: 65 DAFLHYLDLGPNFNTQQKYLKQLLSDPKKAPVLSKTQILPEIEKNGSISDVLKVGQEVLV 124 Query: 103 QIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPE 162 QI KE KG LT+ +S AG Y+VL+P + ++ ++R L++ + S++ P+ Sbjct: 125 QIAKEPISTKGPRLTSELSFAGRYIVLIPFADKVSVSTKIKSSEERARLRQLIQSIK-PK 183 Query: 163 GMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYL 222 +IVRT+ GK L +L +K WE AP +I++E+ V RD Sbjct: 184 NFSVIVRTSSEGKRVAELDHELKTLMKRWEDNIVKVPKLKAPAIIYEETARTVALLRDIF 243 Query: 223 RQDIGEILIDNPKVLELARQHIAAL--GRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQ 280 I +++ +V R +++ + GR + ++LYTGE+P+F ++ + QI+S F Sbjct: 244 NPSFQNIYVNDKEVYNNVRDYVSLIAPGREEI---VQLYTGELPIFDNFAVTKQIKSLFG 300 Query: 281 REVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEE-TAFNTNLEAADEIARQLRLRDL 339 R V SG ++I+ TEA+ ID+NS ++G D +E TA + N+ AADEIARQLRLRD+ Sbjct: 301 RTVTYKSGAYLIIEHTEAMHVIDVNSGNRSKGSDAQEKTAIDVNIAAADEIARQLRLRDM 360 Query: 340 GGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGES 399 GG+IVIDFIDM +++ + + +A+ DRA+ I +S+FGL++++RQR+ P++ Sbjct: 361 GGIIVIDFIDMAEAANRQKLFEHMTKAMANDRAKHNILPLSKFGLMQITRQRVRPAMDVD 420 Query: 400 SHHVCPRCSGTGTVR----DNESLSLSILRLIEEEALKENTQEVHAIV 443 + CP C GTGTV+ +SL I L+ + +K+ T VH V Sbjct: 421 TSEDCPSCFGTGTVKPSILFTDSLEEKIDCLVNKHHVKKFTLHVHPYV 468 >UniRef50_A9ESZ7 Ribonuclease G n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9ESZ7_SORC5 Length = 907 Score = 253 bits (646), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 147/378 (38%), Positives = 229/378 (60%), Gaps = 7/378 (1%) Query: 90 IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-DR 148 I++V+REGQEVIVQ+ KE G KGA +T+ ISL G Y+V +P G IS+RI + +R Sbjct: 508 IREVVREGQEVIVQVSKEPIGTKGARVTSHISLPGRYVVYLPTVDHIG-ISKRIGSEKER 566 Query: 149 TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRP-APFLI 207 + L++A+ +++ P+G GLIVRT G + + L+ D+ + ++ W + K ES AP ++ Sbjct: 567 SRLRDAIEAMKPPQG-GLIVRTLAEGLTKKQLKADVGYLVRLWGEVAKKRESGVRAPAVL 625 Query: 208 HQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFS 267 + E +++++ RD DI +I+ID+ + R+ + P+ + ++LY G P+F Sbjct: 626 YTELDLVLKTARDLFTDDIEKIVIDDREEYIRLRRFVEMF-MPERADAVELYEGTEPIFD 684 Query: 268 HYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGG--DIEETAFNTNLE 325 Y IE +I+ A R+V LPSGG ++ID EALTAID+N+ R G D+EET TNLE Sbjct: 685 AYGIEDEIQRALSRKVPLPSGGHLIIDQAEALTAIDVNTGRFVGKGSKDLEETILTTNLE 744 Query: 326 AADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLL 385 A +EIA QLR R++GGLI++D IDM +++ V RL E + +D+A+ ++ IS GL+ Sbjct: 745 AVEEIAYQLRFRNIGGLIILDLIDMERAQNREKVRRRLEELLSRDKAKTTLNRISDLGLI 804 Query: 386 EMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPV 445 EM+R+R SLG + C C GTG ++ ++++ ILR I E + V Sbjct: 805 EMTRKRTRESLGRTILEPCFYCDGTGQLQSKQTVAYEILRQIRRERMNLPGYSVVVNAHP 864 Query: 446 PIASYLLNEKRSAVNAIE 463 + L N++R AV E Sbjct: 865 AVIDLLKNDERIAVQEAE 882 Score = 57.8 bits (138), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 30/87 (34%), Positives = 50/87 (57%), Gaps = 1/87 (1%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K +L+ E RVAL++ + +L +E + NIY GK++R+ P ++AAF+D G Sbjct: 3 KNLLVINVDIRETRVALIENGIIAELHLERESSKGTLGNIYLGKVSRVLPGMQAAFIDVG 62 Query: 62 AERHGFLPLKEIAR-EYFPANYSAHGR 87 ER FL ++++ R + F A + H R Sbjct: 63 LERAAFLHVEDLIRPDDFEAYLAGHRR 89 >UniRef50_B1H0J1 Ribonuclease G n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0J1_UNCTG Length = 488 Score = 252 bits (644), Expect = 5e-65, Method: Compositional matrix adjust. Identities = 158/460 (34%), Positives = 259/460 (56%), Gaps = 24/460 (5%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K +++N T +E RVA++D +L++L IE E+ NIYKG++ I P+L + FVD G Sbjct: 16 KEIIVNRTFEES-RVAILDNGKLFNLFIERRESEKILNNIYKGRVKNIVPALNSLFVDIG 74 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFIS 121 R +L + +I +E+ K++++ GQ+++VQ+ KE NKGA +T IS Sbjct: 75 FGRGAYLDVCDILKEHRSK----------KNMIKAGQDIMVQVYKEPIHNKGAKVTMAIS 124 Query: 122 LAGSYLVLMP--NNPRAGGISRRIEGDDRTE---LKEALASLELPEGMGLIVRTAGVGKS 176 L G LV MP NN G+S+ I+ D+ E LK A L+ G+I+RT + Sbjct: 125 LTGRLLVYMPFSNNI---GVSKNIK--DKHEYNRLKSMTAELKKDISGGIIIRTKAEKAT 179 Query: 177 AEALQWDLSFRLKHWEAI-KKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPK 235 ++ ++ + ++ W +I ++ +++P LIH++ ++ + DY D+ + ID+ K Sbjct: 180 KAEIKNEIKYLIRLWASITERFDDAKPMS-LIHKDLGLVFQTVIDYFSDDVIFMRIDSQK 238 Query: 236 VLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDS 295 L+ + + P+F +I Y P+F Y IE +I+ +V L SGG ++I Sbjct: 239 ELKDVTDFVEIV-LPEFLDRIVFYDDRTPIFKKYGIEEEIKRLCSNKVWLSSGGYLIIQE 297 Query: 296 TEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRH 355 E+L AID+NS + T E+TA TNLEAA+EIARQLRLR++GG+IVIDFIDM + Sbjct: 298 AESLCAIDVNSGKFTAKSTQEDTAVITNLEAAEEIARQLRLRNIGGIIVIDFIDMKKASN 357 Query: 356 QRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRD 415 +R V LR+A + D+A+I+I I+R GL+EM+R+R SL +CP C G V Sbjct: 358 RRKVLETLRKATKVDKAKIEIWPITRLGLIEMTRERKRKSLFSILGDICPVCHGLSFVLS 417 Query: 416 NESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEK 455 ES+ +++ I++ + + + + + Y + +K Sbjct: 418 KESIFINVCDEIKQLKIDGYDGRIKIKLNIDVIEYFMKKK 457 >UniRef50_C4LJU7 Ribonuclease E n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LJU7_CORK4 Length = 1258 Score = 251 bits (640), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 148/411 (36%), Positives = 227/411 (55%), Gaps = 43/411 (10%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQ 98 NIY G++ + S+EAAFVD G +R+G + +I ++ ++ R I+ L+ G Sbjct: 458 GNIYLGRVQNVLASMEAAFVDIGTDRNGVIYSGDI--DWRHTRHTGRQRK-IEKALKPGD 514 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASL 158 ++VQ+ K+ G+KG LT+ ISLAG YLV +P RA G+SR++ +R LK+A++ + Sbjct: 515 PILVQVTKDSVGHKGPRLTSHISLAGRYLVYVPEG-RAHGVSRKLPEPERKRLKKAVSGI 573 Query: 159 ELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAI-KKAAESR---------------- 201 LP+ G I+RTA G E + D+ + W+ I +KA E R Sbjct: 574 -LPDEGGAIIRTAAEGVDTEDIARDVRRQQNVWDTILEKADELRTLPGSQASSGKGSGKK 632 Query: 202 -------------PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALG 248 P +H+E N++V+ RD +D E+++D + + +I + Sbjct: 633 NSKGGKKGSKPHFDGPQTLHEEPNLLVKVVRDLFNEDFDELIVDGGRSWSMVSSYIHRIA 692 Query: 249 RPDFSSKIKLY-----TGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAID 303 PD K+ Y G+ F H+ I+ Q++ A R V LPSGG++VI+ TEA+T ID Sbjct: 693 -PDLEEKLSKYERQDHDGQ-DAFGHWGIDKQLKQALDRVVFLPSGGTLVIEKTEAMTVID 750 Query: 304 INSARAT-RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENR 362 +N+ R T G +EET NLEAADEI RQ+RLRD+GG+IV+DFIDM +Q V R Sbjct: 751 VNTGRFTGSSGSLEETVTRNNLEAADEIVRQMRLRDIGGMIVVDFIDMVLEENQELVLRR 810 Query: 363 LREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 L EA+ +DR R Q+ ++ GL++++R+RL L E+ C C G G + Sbjct: 811 LSEALAKDRTRHQLGEVTSLGLVQITRKRLGKGLVETFSTPCSECHGRGFI 861 >UniRef50_B8FM65 Ribonuclease, Rne/Rng family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FM65_DESAA Length = 529 Score = 251 bits (640), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 166/502 (33%), Positives = 259/502 (51%), Gaps = 45/502 (8%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+++IN E RVALV+ L +L IE G +NIYKG++ R+ P ++AAFVD G Sbjct: 3 KKLIINDAGFET-RVALVEDGALAELYIERTGESDIVSNIYKGRVMRVLPGMQAAFVDIG 61 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRP--------------------------------- 88 ++ F+ + ++ + FP++ + G P Sbjct: 62 LDQAAFIYVDDVVMD-FPSDET--GSPLIHEDEEDQEVILLDAEDDDDEIEEAARIIRPP 118 Query: 89 ----NIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI- 143 +I+D++REGQE++VQ+ K G KGA +T+ I++ G +LVLMP G +SRRI Sbjct: 119 RIRPSIEDMIREGQEIMVQVAKSPIGKKGARVTSRITIPGRFLVLMPTTNHIG-VSRRIT 177 Query: 144 EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPA 203 + +R LKE L + E G IVRT G E L ++ F + W+ + A Sbjct: 178 DSGERNRLKEQLMEARV-EPFGYIVRTVCEGIGPEKLTHEVEFLTRVWKRVVHRYWQCSA 236 Query: 204 PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEI 263 P L+HQE + +R+ RD +++ ++ID+ + + + P ++ Y Sbjct: 237 PSLLHQELSASLRSVRDLFTKEVDRLVIDSERGYREIQDFLEP-NMPGLRDAVQYYDRRE 295 Query: 264 PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTN 323 P+F YQ+E I +++V L SGG IVI+ TEAL +ID+N+ R GD+ ET TN Sbjct: 296 PIFDAYQLEGDISRLGRKKVWLKSGGYIVIEETEALVSIDVNTGRYVGKGDLSETILKTN 355 Query: 324 LEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFG 383 LEA EIA QLRLRD+GG+IVIDFIDM + + V L E +++DR+ + +S G Sbjct: 356 LEALKEIAYQLRLRDIGGIIVIDFIDMEKLEDRDKVYQVLVETLKKDRSTTNVLPMSEMG 415 Query: 384 LLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIV 443 L++M+R+R ++ C C G G V +S+ +I R I ++ + Sbjct: 416 LIQMTRKRTRENINRQLSEPCAYCEGEGIVLSKKSICHNIYREILRQSYDIQGSRISVKA 475 Query: 444 PVPIASYLLNEKRSAVNAIETR 465 IA +LL E+ V ++E R Sbjct: 476 HPEIARFLLEEENITVLSLEQR 497 >UniRef50_C6JJB6 Ribonuclease G and E n=2 Tax=Fusobacterium RepID=C6JJB6_FUSVA Length = 489 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 156/424 (36%), Positives = 244/424 (57%), Gaps = 9/424 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M +++IN + + R A+++ ++ ++ IE + +IYKGK+ + P +E+AFV+ Sbjct: 1 MNQIVINIDEFQS-RAAIIEDGKVVEILIEREEEGRINGSIYKGKVANVLPGMESAFVNI 59 Query: 61 GAERHGFL---PLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALT 117 G E++GFL L+E +Y ++ RP I+D+L G +V+VQI E RG KGA +T Sbjct: 60 GLEKNGFLYVNDLREFEEKYLDGILNS-SRP-IEDILNVGDDVVVQILNEPRGTKGARVT 117 Query: 118 TFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSA 177 T ++ G YLVLMPNN IS++I+ + E E++ PE MG+I+RTA GKS Sbjct: 118 THFTIPGKYLVLMPNNDHI-AISKKIKDEKERERLESIFKEIKPENMGVIIRTAAFGKSE 176 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 + ++ + +K WE I+K + ++++++ +I RD DI E+++DN V Sbjct: 177 FHFEREIEYLVKKWEDIEKKIKGAKIGEVLYKDNGIITTVLRDIFSNDIDELIVDNEDVY 236 Query: 238 ELARQHIAALGRPDFSSKIKLYTG--EIPLFSHYQIESQIESAFQREVRLPSGGSIVIDS 295 +I A +KIKLY E +F Y I +I+ A V L GG +VI Sbjct: 237 WEVIDYINAFSEKTLKTKIKLYKDGKEKDIFDLYGINEEIDKALNEVVWLECGGYLVIQK 296 Query: 296 TEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRH 355 TEAL +ID+N+ + T ++EET NTN+EAA EI RQLRLR+ GG+I+IDFIDM Sbjct: 297 TEALISIDVNTGKNTGSLNLEETVVNTNIEAAKEIPRQLRLRNFGGIIIIDFIDMRVEED 356 Query: 356 QRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRD 415 + V L + +++DR + I H + GL+EM+R+R L VCP C+GTG ++ Sbjct: 357 KIKVLEALEKHLQKDRIKNNIVHFTDLGLVEMTRKRSGKPLAYYFQEVCPCCNGTGKIKS 416 Query: 416 NESL 419 ++L Sbjct: 417 KDAL 420 >UniRef50_B0VJP4 Ribonuclease G n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJP4_9BACT Length = 505 Score = 251 bits (640), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 148/426 (34%), Positives = 242/426 (56%), Gaps = 16/426 (3%) Query: 13 ELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKE 72 E RVA+++ RL +L +E + NIYKG + + P + AAF++ G ER FL + Sbjct: 18 EKRVAVLEDSRLVELFVERREQQNIVGNIYKGIVKDVLPGMGAAFIEIGLERTAFLHYSD 77 Query: 73 IAREYFPANYSAHGRPN--------IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAG 124 I ++ +A R I +L+ GQE++VQ+ K G+KGA LT IS+ G Sbjct: 78 IVMDFLDIYENALPRTKVNPEDSSQIDKLLKPGQEIVVQVHKGPIGSKGARLTGQISIPG 137 Query: 125 SYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWD 183 YLVL PN + +SR+I +R+ ++ L+ ++ P G GLIVRT G + Q + Sbjct: 138 KYLVLFPNKDKIA-VSRKIYSQAERSRIRNLLSGIKDP-GYGLIVRTEAEGCEEDDFQTE 195 Query: 184 LSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQH 243 +K W I+K + AP + +E+ + RD +++ ++ID+ A++ Sbjct: 196 YKALIKTWHLIEKQIKYAKAPVCVFEENALENYLIRDLFGENVDRLVIDDKN---FAKRI 252 Query: 244 IAALG--RPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTA 301 I+ L P+ + I++Y + P+F + IE +IE+ + LPSGG+I I+ TEAL A Sbjct: 253 ISQLTDISPELINNIEIYREDSPIFDAWGIEKKIETVLHSRIYLPSGGNIKIEQTEALVA 312 Query: 302 IDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVEN 361 ID+N+ T + +ET TNLEAA EIARQ+RLRDL G+I+IDFIDM +++ V Sbjct: 313 IDVNTGSFTGKTNYDETVRKTNLEAAAEIARQIRLRDLSGVIIIDFIDMVEEKYKNEVLE 372 Query: 362 RLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSL 421 L++ +R+DRA+ ++ + GL+E++R+R+ +L + CP C+G+G + +S+ + Sbjct: 373 MLKKGLRRDRAKNKVYSFTELGLVEVTRKRMRNTLISNFSDPCPFCNGSGRILSKDSVIM 432 Query: 422 SILRLI 427 I R + Sbjct: 433 RIYRWL 438 >UniRef50_Q1D0P4 Ribonuclease, Rne/Rng family n=7 Tax=Proteobacteria RepID=Q1D0P4_MYXXD Length = 936 Score = 249 bits (635), Expect = 5e-64, Method: Compositional matrix adjust. Identities = 144/381 (37%), Positives = 221/381 (58%), Gaps = 8/381 (2%) Query: 90 IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-DR 148 I+D+L+ GQEV+VQI K+ G KGA LT+ IS+ G +LV MP G ISRRI + +R Sbjct: 359 IEDLLKVGQEVVVQISKDPIGTKGARLTSHISIPGRHLVFMPTVDHVG-ISRRISNEKER 417 Query: 149 TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH 208 L++ + L P G G IVRT E L+ D+ F ++ W + + E R P L+H Sbjct: 418 RRLRDIVDRLR-PPGTGFIVRTVAENVPQEKLESDIRFLIEVWNQVVRKNEKRGGPGLLH 476 Query: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSH 268 + ++I+RA RD D+ ++++D+ + E + A P ++ L+ G+ +F Sbjct: 477 PDLDLILRATRDLFAHDVEKLVVDDREEYERILGFVTAQD-PALRDRVALHEGDDTVFDA 535 Query: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328 Y IE +++ A QR+V L SGG ++ID EALTAID+NS R +EET N+EAA Sbjct: 536 YGIEQELQRATQRKVWLKSGGYLIIDQAEALTAIDVNSGRYVGKKSLEETITKINVEAAK 595 Query: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388 EI QLRLR++GG+I+ DFIDM +++ V L+EA+ +D+A+ + IS GL+EM+ Sbjct: 596 EIVYQLRLRNIGGIIICDFIDMEKAQNRDKVFKALQEALGRDKAKTNVLRISELGLVEMT 655 Query: 389 RQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEA--LKENTQEVHAIVPVP 446 R+R+ S+G H CP C G G V+ +++ I R I EA K++T ++ V Sbjct: 656 RKRVRESIGRMLHEDCPYCDGNGFVKTATTVAYEIFREIRREAPGYKDSTLVINCNAEV- 714 Query: 447 IASYLLNEKRSAVNAIETRQD 467 A L E+R+ + + R + Sbjct: 715 -ARLLQGEERNELRHLMDRYN 734 Score = 56.2 bits (134), Expect = 8e-06, Method: Compositional matrix adjust. Identities = 27/70 (38%), Positives = 44/70 (62%), Gaps = 1/70 (1%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 ++INA +E RVALV+G + + +E + NIYKG++ R+ P ++AAFVD G E Sbjct: 5 LVINAAGRE-TRVALVEGGHIAEFYLERKKDKGVVGNIYKGRVVRVLPGMQAAFVDIGLE 63 Query: 64 RHGFLPLKEI 73 + FL + ++ Sbjct: 64 KAAFLYVSDV 73 >UniRef50_C6D805 Ribonuclease, Rne/Rng family n=3 Tax=Bacillales RepID=C6D805_PAESJ Length = 411 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 145/400 (36%), Positives = 234/400 (58%), Gaps = 14/400 (3%) Query: 18 LVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREY 77 L+DG RL D +E N+YKG++ + P ++AAFVD G ++ FL + ++ + Sbjct: 13 LMDG-RLIDFFMEQSESSGLVGNVYKGRVVNVLPGMQAAFVDIGLGKNAFLYIDDLLHPH 71 Query: 78 FPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAG 137 +P+I ++++ GQE++VQ+ KE G+KGA +TT +L G +LV MP AG Sbjct: 72 LEKQ--PEHKPSITELVKPGQELVVQVMKEPMGSKGARVTTHFTLPGRWLVYMPI---AG 126 Query: 138 --GISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAI 194 G+S++I + +R+ ++ L E G+I+RTA G+ E+L D+ + W ++ Sbjct: 127 YIGVSKKIMAESERSRIRMIGERLRQGE-EGIIMRTAAEGECEESLGADVDQLRQLWTSV 185 Query: 195 KKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSS 254 + A+ AP +H+E+ ++ RA RD L D+ E+ +D+P A + + P + Sbjct: 186 LQRADHAKAPAELHREAGLLRRAVRDTLTDDMDEVWLDDPSRYSEAVSLLKEM-TPHLAG 244 Query: 255 KIKLYTG---EIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATR 311 ++KL+ ++ LF + + QIE+AF +RL SGGS+V D TEALT ID+N+A+ Sbjct: 245 RLKLFEARKEKVSLFDRFGVTDQIEAAFSSRIRLESGGSLVWDETEALTVIDVNTAKYIG 304 Query: 312 GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDR 371 +E+T F TN+EAADEIAR LR+RD+GG+IVIDFIDM ++ V RL + ++DR Sbjct: 305 ATGLEDTVFKTNMEAADEIARLLRIRDVGGIIVIDFIDMENESNREKVMARLSDWAKKDR 364 Query: 372 ARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTG 411 + + +R GLLE++R++ + CP C GTG Sbjct: 365 TKCTVFGWTRLGLLELTRRKARDNAARQLTERCPACGGTG 404 >UniRef50_D1Y9V9 S1 RNA binding domain protein n=3 Tax=Propionibacterium acnes RepID=D1Y9V9_PROAC Length = 874 Score = 247 bits (631), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 148/388 (38%), Positives = 225/388 (57%), Gaps = 24/388 (6%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPN-IKDVLREG 97 NIY GK+ + PS+EAAF+D G R+ L A E A Y G I+ VL+ G Sbjct: 465 GNIYLGKVQNVLPSMEAAFIDIGRGRNAVL----YAGEVDWAKYGKEGEDKRIEHVLKSG 520 Query: 98 QEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALAS 157 +V+VQ+ K+ G KGA LT+ IS+ G ++V P GISR++ +R LK+ + + Sbjct: 521 DQVLVQVTKDPVGAKGARLTSHISVPGRFVVYSPGG-HLSGISRKLADSERKRLKKIVEN 579 Query: 158 LELPEGMGLIVRTAGVGKSAEALQWDLSFRLK-HWEAIKKAAESRPAPFLIHQESNVIVR 216 +P +IVRTA G + E L D++ RLK WE I++ + AP +++ E ++ VR Sbjct: 580 -NIPSDASVIVRTAAEGATEEDLVRDIN-RLKVQWEVIERKVSNSKAPLMLYTEPDLTVR 637 Query: 217 AFRDYLRQDIGEILI-------DNPKVLELARQHIAALGRPDFSSKIKLY--TGEIPLFS 267 RD D E++I D ++ H+A P+ +S++ + T + P F+ Sbjct: 638 IIRDLFTADFSELVIAGNGGPDDAYDTIKAYVDHVA----PEMASRLIHWEHTDKDP-FA 692 Query: 268 HYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT-RGGDIEETAFNTNLEA 326 Y+I+ Q+ A +R+V LPSGGS+VID TEA+T ID+N+ + T G++E T NLEA Sbjct: 693 EYRIDEQVAKALERKVYLPSGGSLVIDRTEAMTVIDVNTGKFTGSAGNLEATVTANNLEA 752 Query: 327 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLE 386 A+EI RQLRLRD+GG+IVIDFIDM ++ + RL E + +DR R Q++ ++ GL++ Sbjct: 753 AEEIVRQLRLRDIGGIIVIDFIDMVLPTNRELLVRRLTECLGRDRTRHQVAEVTSLGLVQ 812 Query: 387 MSRQRLSPSLGESSHHVCPRCSGTGTVR 414 M+R+++ L E+ C C G G R Sbjct: 813 MTRKKIGTGLAEAFTEQCEACGGRGYRR 840 >UniRef50_C7LYB0 Ribonuclease, Rne/Rng family n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LYB0_ACIFD Length = 457 Score = 246 bits (629), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 141/385 (36%), Positives = 220/385 (57%), Gaps = 7/385 (1%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQ 98 NIY G++ + P +EAAF+D G ++ L ++ E G I+ +LR Q Sbjct: 75 GNIYLGRVVNVLPGMEAAFIDIGTAKNAVLYRGDVRYEREDLEGLGDG-ARIEQLLRPKQ 133 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASL 158 ++ Q K +KGA LT +SL G + VL+P R+ GIS+R+ +R L+ + L Sbjct: 134 VIVCQAVKNPIAHKGARLTQEVSLPGRFAVLVPGQ-RSVGISKRLPDQERRRLRGLVEDL 192 Query: 159 ELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAF 218 +PEG G+I+RTA G + L+ D++ + W+ I + A + AP L++QE VR Sbjct: 193 -VPEGFGVILRTAAEGATRAELERDITQLVGMWQRIDELARTEHAPALLYQEPPAAVRVI 251 Query: 219 RDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGE---IPLFSHYQIESQI 275 R+ Q+ + ID+ + E +++ + P+ + +++ Y E +P+F Y ++ Q+ Sbjct: 252 REEFSQEFRSVAIDDRALYEDVARYVQTIS-PELADRVEYYDAEAEGVPIFQRYHVQHQL 310 Query: 276 ESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLR 335 A +R V LPSGGS+VID EALT ID+N+AR +EET NLEA +EIARQLR Sbjct: 311 AKALERTVWLPSGGSLVIDRAEALTVIDVNTARNVGAVSLEETIHRNNLEAVEEIARQLR 370 Query: 336 LRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPS 395 LRD+GG+IVID +DM +++ V R A+ +D+ R + +S GL++M+RQR+S Sbjct: 371 LRDIGGIIVIDVVDMVDPQNRDDVMRAFRAALARDKTRTHVYDMSPLGLIQMTRQRISEG 430 Query: 396 LGESSHHVCPRCSGTGTVRDNESLS 420 L ES CP C G G V D + ++ Sbjct: 431 LVESLSSTCPTCHGQGYVLDEDVVA 455 >UniRef50_C0WDS2 Ribonuclease n=1 Tax=Acidaminococcus sp. D21 RepID=C0WDS2_9FIRM Length = 468 Score = 244 bits (624), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 147/415 (35%), Positives = 231/415 (55%), Gaps = 23/415 (5%) Query: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 EE R+ LV +L D +E G NIY+G+++ + P ++AAF+D ++GFL L Sbjct: 11 EETRMGLVFDSKLRDFAVERRGEGNLVGNIYRGRVSNVVPGIQAAFIDLNVGKNGFLTLH 70 Query: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 + +D L EGQ ++VQ+ K+ RG KG +T ++L G Y+VL P Sbjct: 71 K------------------QDRLTEGQMLLVQVVKDCRGTKGPGVTRNVTLPGRYIVLEP 112 Query: 132 NNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 R +SR+I RT L+ L LPEGMG+++RTA +AE ++ DL L Sbjct: 113 FGNRIS-LSRKITCKSLRTRLR-TLVQKSLPEGMGVVIRTAAAKAAAEEIENDLRQLLAS 170 Query: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 W+ + + ++ P L+++E ++ +R RDY+ +D+ +I++D+ + + +G Sbjct: 171 WQVLLRRSKVGRGPQLLYRELDLSIRMIRDYVTKDVQKIIVDDEATYHTVEELLQDMGLT 230 Query: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 + + + Y + LF+HY + +I S R V LP GGS+V D TEA+T ID+NS + Sbjct: 231 EI--RTEWYQEKEDLFTHYGLNEEIASISDRVVPLPGGGSLVFDYTEAMTVIDVNSGHYS 288 Query: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 G D EET+ TN EAA EIARQLRLRD+GG+IV DFIDM Q + + LR D Sbjct: 289 TGSDREETSLATNREAALEIARQLRLRDIGGIIVADFIDMERKEEQEEILDLLRREFAMD 348 Query: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILR 425 R + ++ ++ L+EM+R + +L + + CP C G+G V E++ + I R Sbjct: 349 RMKPRVMGMTALNLVEMTRMKARRNLFGTVYTTCPMCQGSGRVESPETVYVEIRR 403 >UniRef50_A3EQR7 Ribonucleases G and E n=3 Tax=Leptospirillum RepID=A3EQR7_9BACT Length = 527 Score = 244 bits (624), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 177/506 (34%), Positives = 267/506 (52%), Gaps = 48/506 (9%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 +LI+ + EE +VALV+ ++L + E NIYKG++ ++ P ++AAFVD G E Sbjct: 3 ILIHVSH-EETKVALVENRQLAEFFFERKREAGVVGNIYKGRVNKVLPGMQAAFVDVGLE 61 Query: 64 RHGFLPLKEI---AREYFPANYS----------------AHG------------------ 86 + FL + +I + P A G Sbjct: 62 KAAFLYVDDIYVEGSDILPGEMPQDDQTAPPPPVEGESPAEGSLTEDPAAGPVSRPEPPR 121 Query: 87 ---RPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI 143 R I+++L EGQE+++Q+ KE KG TT+ISL G YLV MP G+SRRI Sbjct: 122 KVPRKPIEEILTEGQEILIQMTKEPISTKGPRATTYISLPGRYLVYMPQVNHV-GVSRRI 180 Query: 144 EG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRP 202 ++R LKE + +L+ +G G I+RT G S + D+ F W+ I+ AE+ Sbjct: 181 TNEEERQRLKEMVNALKGGKG-GYIIRTVAEGMSESEARSDIIFLELLWQDIRSRAETMK 239 Query: 203 APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGE 262 AP L+ ++ +V+ R RDYL ++ + ID+ K + I PD++S+++L+ G Sbjct: 240 APSLVREDLDVVFRTIRDYLTHEVETLYIDDVKEYKRVMDFIGTY-MPDYASRVRLWEGP 298 Query: 263 IPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNT 322 PLF+ Y IE Q+ A +++V L SGG +VID EALT ID+N+ R D E T T Sbjct: 299 TPLFASYDIERQLSKALEKKVWLKSGGYLVIDRAEALTVIDVNTGRFVGENDPESTILQT 358 Query: 323 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRF 382 NLEA EIARQLRLR++GG+I+IDFIDM +++ V L+E++ D+AR IS Sbjct: 359 NLEAVTEIARQLRLRNIGGIIIIDFIDMEKEKNREKVFQGLQESLAHDKARTNALKISDL 418 Query: 383 GLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSIL-RLIEEEALKENTQEVHA 441 GL+EMSR+R+ L C C G G + +++ IL L + +N +E A Sbjct: 419 GLVEMSRKRVREDLVHLLGETCAYCDGKGYTKSLRTIAYEILEELRSVPSGGQNPKEKKA 478 Query: 442 IVPV--PIASYLLNEKRSAVNAIETR 465 I+ V I + L E+R + A+E + Sbjct: 479 ILFVHPEIQTILQEEERDFLQAVERK 504 >UniRef50_C1PAJ8 Ribonuclease, Rne/Rng family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PAJ8_BACCO Length = 492 Score = 244 bits (623), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 160/448 (35%), Positives = 250/448 (55%), Gaps = 19/448 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M R +I + E R A+++ ++ + I PG K NIY GK+ ++P + AAF+D Sbjct: 1 MDRSIIINVKTREKRYAVIENGKVSGIRIRQPGDAAKVGNIYLGKVADVKPGINAAFIDI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G RHG+L I+R AN S + P I L GQ V+VQ+ K+E G KG LT I Sbjct: 61 GGIRHGYL---HISRLPAFAN-SKNSNPTISAYLSPGQTVMVQVKKDETGQKGPLLTGII 116 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEAL-ASLELPEGMGLIVRTAGVGKSAEA 179 L+G +V +P + +S++ + DR + + +LE EG +IVRTA + + Sbjct: 117 ELSGEQIVYLPEG-KYTAVSKKADDADRNRWRNRVRKALEPQEG--IIVRTAAIHAGGDG 173 Query: 180 LQWDL-SFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 + +L RL++ ++KAA+ + AP ++H++S V FR+ +R G +++D+ + Sbjct: 174 WRDELKCLRLRYKCLLEKAAQLK-APAVLHEKSTVEAEIFRELVRLKSGTVIVDDAE--A 230 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 LAR GRP+ +LY+G+ +F+ Y+I+ +E A +R V L +G +VID TEA Sbjct: 231 LARLKALLAGRPELDWSFELYSGKQNIFTRYRIDRTLEDALKRVVWLENGAYLVIDETEA 290 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 LT ID+N+ + T D ET TNL AA EI RQL+LRD GG+I++DFIDM + Sbjct: 291 LTIIDVNTGKYTGTTDQAETVLKTNLLAAKEIGRQLKLRDYGGIILVDFIDMQRDEQRAQ 350 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 V L + + D + +I+ + G+L+M+R++ SL E+ VCP C G+G + E+ Sbjct: 351 VRAVLEKELENDEKQTRITGFTELGILQMTRKKTRKSLPEALLSVCPVCGGSGKIESPET 410 Query: 419 LSLSILR-LIE------EEALKENTQEV 439 L+ + R L E E L E TQ+V Sbjct: 411 LAFRLERELWEAPYADYEAVLIECTQDV 438 >UniRef50_B1VGM2 Ribonuclease E n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VGM2_CORU7 Length = 1190 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 144/409 (35%), Positives = 231/409 (56%), Gaps = 16/409 (3%) Query: 15 RVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIA 74 +V +V+ +L + + S + NIY G++ + S+EAAF+D G R+ L E+ Sbjct: 397 QVGVVEDGQLVEHFVTSDTQQSMVGNIYLGRVQNVLASMEAAFIDIGTGRNAVLYASEV- 455 Query: 75 REYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNP 134 + P +S R I LR G +V+VQ+ K+ G+KGA LT IS AG YLV P Sbjct: 456 NWHSPHLHSKSRR--IDQALRSGDQVMVQVIKDPVGHKGARLTNRISFAGRYLVYFPGGT 513 Query: 135 RAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAI 194 AG ISR++ +R LKE L + +P G I+RTA + E ++ D++ K W I Sbjct: 514 TAG-ISRKLPEAERKRLKEILQRV-VPGQGGAIIRTAAENVAEELIEEDVNRLHKQWLNI 571 Query: 195 KKA-AESRPA----PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGR 249 +K A+ R + P +++E N+++ RD +D E+L++ K + R ++ + Sbjct: 572 EKTEAKERKSKGAKPVTLYEEPNMLITVIRDLFNEDFSELLVEGDKSWRMVRDYMGRMA- 630 Query: 250 PDFSSKIKLYT----GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDIN 305 P+ ++ + + +F+ ++++ Q+ A R+V LPSGG +VID TEA+T ID+N Sbjct: 631 PELMDRVHKWHPEQHADEDVFAAHRLDDQLAKALCRKVWLPSGGHLVIDHTEAMTVIDVN 690 Query: 306 SAR-ATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLR 364 + GG++EET NLEAA+EI RQ+RLRD+GG+IV+DFIDM +Q V RL Sbjct: 691 TGSFVGSGGNLEETVTENNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLEENQDLVLRRLI 750 Query: 365 EAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 E + +DR ++S ++ GL++++R+RL L E+ C C G G + Sbjct: 751 EYLGRDRTHHKVSEVTSLGLVQITRKRLGAGLLETFSTTCECCDGRGVI 799 >UniRef50_Q8DL99 Ribonuclease E n=3 Tax=Chroococcales RepID=Q8DL99_THEEB Length = 668 Score = 243 bits (621), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 153/405 (37%), Positives = 224/405 (55%), Gaps = 15/405 (3%) Query: 12 EELRVALVDGQ-RLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG-AERHGFLP 69 EE R+A V + ++ +L + + H+ +IY G + + P ++AAFV+ G A R+GF+ Sbjct: 9 EEHRLAAVFAEDQIQELIVATGTHQ--VGDIYLGVVENVLPGIDAAFVNLGDASRNGFIH 66 Query: 70 LKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129 + ++ A I ++L Q+V+VQ+ KE G KG LT ISL G YLVL Sbjct: 67 VSDLGPLRLKRTAGA-----ITELLAPQQKVLVQVMKEPTGTKGPRLTGNISLPGRYLVL 121 Query: 130 MPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLK 189 MP R +SRRI + AL L P GMGL+VRT G S EA+ DL + Sbjct: 122 MPYG-RGVNLSRRITNEAERHRLRALGILVKPAGMGLLVRTEAEGVSEEAILEDLELLQR 180 Query: 190 HWEAIKK-AAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAA-- 246 WE I++ AA SRP P L+ ++ + I + RD D+ I++D P ++ +QH+ Sbjct: 181 QWETIQQQAAASRP-PQLLGRDDDFIQKVLRDVYSSDVNRIVVDTPDGVKRVKQHLKNWN 239 Query: 247 LGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINS 306 + RP I + IP+ ++++ + I A + V LPSGG I+I TEALT ID+NS Sbjct: 240 VNRP-VGVLIDYHQEPIPILDYFRVNAAIREALKPRVDLPSGGYIIIQPTEALTVIDVNS 298 Query: 307 ARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREA 366 T ET TN EAA EIARQLRLR++ G+I++DFIDM R Q + +A Sbjct: 299 GSFTSSATSRETVLWTNCEAATEIARQLRLRNIAGVIIVDFIDMDSRRDQLLLLEHFSKA 358 Query: 367 VRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTG 411 +R D+AR QI+ +S GL+E++R+R ++ E C C G G Sbjct: 359 LRADKARPQIAQLSELGLVELTRKRQGQNIYELFGRPCSACGGLG 403 >UniRef50_Q0AWI9 RNAse G n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWI9_SYNWW Length = 476 Score = 243 bits (620), Expect = 3e-62, Method: Compositional matrix adjust. Identities = 152/425 (35%), Positives = 238/425 (56%), Gaps = 12/425 (2%) Query: 13 ELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKE 72 E RVA+V+ RL ++ G K IYKGKI I P L F+D G R+ FL + Sbjct: 13 ESRVAIVEDGRLAEVFWADQGENVGK--IYKGKIKDILPGLSCVFIDIGLARNAFLYAGD 70 Query: 73 IAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPN 132 + R N+ ++L+ GQ+++VQ+ KE KGA +T +S+ G LVL+P Sbjct: 71 VVR------VGKKKGLNVYELLKSGQDIMVQVKKEAFSEKGARVTGDLSIPGRLLVLLPF 124 Query: 133 NPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWE 192 ISR+I GD+R + +L PE G+IVRTA + + + +L+ LK WE Sbjct: 125 QNEVS-ISRKITGDERRKHLRSLLEESKPENGGIIVRTACLEAEDQEIIQELNRLLKTWE 183 Query: 193 AIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDF 252 IK+ ++R AP LI+++ +V+ R RDYL ++ I+I+N ++ + +I+ G+ F Sbjct: 184 EIKQRYQNRKAPSLIYEDMDVLERTMRDYLDGNLSRIVINNRRLKDKILDYIS--GKKIF 241 Query: 253 SSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRG 312 +S +++ E LF Y +E I+ + +R++ L +GG ++ D TEA+T ID+NS + T Sbjct: 242 NS-LRVDYEEGALFEKYNLEKDIKRSLRRKIWLKNGGYLIFDRTEAMTVIDVNSGKFTGK 300 Query: 313 GDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRA 372 + EET F N+EAA EI RQLRLR LGG+I+IDFIDM +Q + L+ + +D+A Sbjct: 301 DNFEETVFKINMEAAIEIPRQLRLRSLGGIILIDFIDMKEKSNQDELIKVLKTGLEKDKA 360 Query: 373 RIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEAL 432 +I I+ G LEM+R++ + E C CSG G + + ++L+ R + Sbjct: 361 NTRIIGITGLGFLEMTRKKSRYGVVEFFTDECSNCSGRGHIINLQALASEAKRKMAHMGY 420 Query: 433 KENTQ 437 EN Q Sbjct: 421 LENNQ 425 >UniRef50_Q7U4C5 Ribonuclease E n=16 Tax=cellular organisms RepID=Q7U4C5_SYNPX Length = 663 Score = 243 bits (619), Expect = 4e-62, Method: Compositional matrix adjust. Identities = 148/405 (36%), Positives = 223/405 (55%), Gaps = 15/405 (3%) Query: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG-AERHGFLPL 70 E+LR+A V D I + G Q ++Y G + + P ++AAFV+ G +E++GF+ + Sbjct: 22 EQLRIAAVLTDERVDELIVAQGRYQI-GDVYLGTVENVLPGIDAAFVNIGESEKNGFIHV 80 Query: 71 KEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLM 130 ++ P G I ++L Q+V+VQ+ KE G KG LT ++L G YLVL Sbjct: 81 TDLG----PLRLK-KGSAGITELLEPRQKVLVQVMKEPTGTKGPRLTGNLALPGRYLVLQ 135 Query: 131 PNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 P+ + ISRRI + AL L P G GL++RT G + + L DL L+ Sbjct: 136 PHG-QGVNISRRISSEAERNRLRALGVLIKPPGAGLLIRTEADGIAEDQLIDDLESLLRQ 194 Query: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 WEAI++AAE+ P L++++ + I R RD+ D+ +++D P + + A Sbjct: 195 WEAIQQAAETAAPPVLLNRDEDFINRILRDHTSTDLVRVVVDEPAAVARVSSFLGA---- 250 Query: 251 DFSSKIKLYTGEIP--LFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSAR 308 + K+ + P L H+++ + I A + V LPSGG ++I+ TEALT ID+NS Sbjct: 251 -EADKVLVEAHSEPSELLEHFKVNAAIRDALKPRVDLPSGGYVIIEPTEALTVIDVNSGS 309 Query: 309 ATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVR 368 TR + ET TN EAA EIARQL+LR++GG+I+IDFIDM R Q + AVR Sbjct: 310 FTRSANARETVLWTNCEAAIEIARQLKLRNIGGVIIIDFIDMDSRRDQLQLLEHFTTAVR 369 Query: 369 QDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 D AR QI+ ++ GL+E++R+R ++ E CP C G G V Sbjct: 370 DDAARPQIAQLTELGLVELTRKRQGQNIYELFGRACPSCGGLGHV 414 >UniRef50_A6LNV2 Ribonuclease, Rne/Rng family n=2 Tax=Thermosipho RepID=A6LNV2_THEM4 Length = 465 Score = 242 bits (618), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 143/415 (34%), Positives = 238/415 (57%), Gaps = 19/415 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M+++L+ + L A+++ RL +L S E+ NIY G+I R+ +L+A FV+ Sbjct: 1 MEKILVLNSLDNGLHYAIIENNRLVEL--ASDEEEKLTGNIYLGRIERVVNALDALFVNI 58 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +++GFL K++ +YF +S N G +++VQ+ K+ G+KG LT+ I Sbjct: 59 GTKKNGFLRFKDVPEKYFEF-FSLKKLEN-------GGKILVQVKKDPVGDKGPQLTSNI 110 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 S+AG Y+VL P + G +S++IE +D R L + +G+I+RTA G Sbjct: 111 SVAGRYVVLFPFSEVVG-VSKKIEDEDERKRLYDLAGRFSEKYNLGVIMRTASEGLDEVH 169 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + ++ K I ++ + + ++++E N++ R+ L +D+ I+ +N K +EL Sbjct: 170 IMSEIDILSKKINKIIESFKRKRKAQVLYKEENLLDYILREKLTKDVKLIITNNFKHVEL 229 Query: 240 ARQHIAALG-RPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 R+++ RP KI++ G+ F + I +R+V LPSGG I+ID EA Sbjct: 230 IRKYLKIFSKRP----KIEIIDGD--SFDYMDIYKYFRELLKRKVLLPSGGEIIIDKAEA 283 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 LT ID+NS +G + +ETAF TN EA EI RQLRLR++GG+I+IDFIDM ++ Sbjct: 284 LTVIDVNSKHFVKGKNQQETAFQTNKEAVSEIFRQLRLRNIGGIILIDFIDMDSDEKKKL 343 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 + ++ E +++D+++I+I +R GLLEMSR+R S E+ +CP C+GTG + Sbjct: 344 ILKQIDEEIKKDKSKIEIFGFTRLGLLEMSRKRTVRSFFENYITICPICNGTGFI 398 >UniRef50_Q9K8J2 Ribonuclease G (Cytosolic axial filament protein) n=1 Tax=Bacillus halodurans RepID=Q9K8J2_BACHD Length = 500 Score = 242 bits (617), Expect = 7e-62, Method: Compositional matrix adjust. Identities = 166/492 (33%), Positives = 273/492 (55%), Gaps = 17/492 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK +L N +E R A+V+ ++ +L IE P E+ N+Y+G++ + P ++A FVD Sbjct: 1 MKSILFNMATRER-RAAVVENGQVIELMIERPVEERIVGNVYRGRVVNVLPGMQACFVDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRP-NIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G E++GFL E+ + + NI D ++EG+E++VQ+ KE G KG LT Sbjct: 60 GREKNGFLYRDELLSFHLSNEEEDEKKKRNISDFVQEGEELLVQVTKEGFGTKGPRLTGV 119 Query: 120 ISLAGSYLVLMPNNPRAG--GISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSA 177 ++ G Y+V M P+AG G+S++I ++ E + L GLI+RTA + Sbjct: 120 VAFPGRYVVYM---PQAGYVGVSKKIFPEEERERWRSEWEQLLLNDEGLIIRTACKKEVR 176 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 + ++ F + WE ++K + AP L++Q S +I R RD+ ++GEI++D+ + Sbjct: 177 HEAEQEILFFRQMWEELQKRGKGAKAPSLLYQSSGLIERILRDFPLDEVGEIVVDDREEY 236 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 +Q +A+ P+ S++ LY G+ +FSH ++E +IE +R+V L +GG +++D E Sbjct: 237 HFIKQLLASY--PNMESRVFLYKGKENVFSHLKVEKEIEKGLRRQVWLKNGGYLMMDHAE 294 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 ALT ID+NS + D+++T N+EAA EIA QLRLRD+ G+I+IDFIDM Q+ Sbjct: 295 ALTVIDVNSGKFIGKQDLQDTVVKVNIEAAKEIAHQLRLRDISGIIIIDFIDMKREEDQQ 354 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V + L +A++ DR + + ++ GL+EM+R+++ SL S CP C GTG V +E Sbjct: 355 LVLHTLEQALKTDRTKTNVIGMTGLGLVEMTRKKVRQSLQASLSKPCPTCRGTGQVLSDE 414 Query: 418 SLSLSILRLIEEEALKENTQEVHAIV---PVPIASYLLNEKRSAVNAIETRQDGVRCVIV 474 + + IE E + + AIV P IA L + + +ET G R + V Sbjct: 415 AQAFK----IERELWEYRGSDAEAIVLELPSHIAPVLFGQDGGHLKRLET-AIGSRILAV 469 Query: 475 PNDQMETPHYHV 486 P ++ Y + Sbjct: 470 PKKTLKEEQYEI 481 >UniRef50_D2RM73 Ribonuclease, Rne/Rng family n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RM73_ACIFE Length = 476 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 146/433 (33%), Positives = 240/433 (55%), Gaps = 25/433 (5%) Query: 12 EELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLK 71 EE R+ V+ +L D +E + N+Y+ ++ + P ++AAFVD ++GFL LK Sbjct: 11 EETRMGTVEDDQLRDYAVERNSADNLVGNVYRARVCNVVPGIQAAFVDLNTGKNGFLTLK 70 Query: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 + + L EGQ ++VQ+ K+ RG+KG A+T I+L G Y+VL P Sbjct: 71 K------------------GETLSEGQMLLVQVVKDARGSKGPAVTRDITLPGRYVVLEP 112 Query: 132 NNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 R +SR+I R EL++ L LP+ MGL++RTA + ++ DL L++ Sbjct: 113 YGSRVS-LSRKISCKTKRKELRDWAREL-LPDHMGLVLRTAAAHAEEDEIRADLEQLLRN 170 Query: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 W+ + + ++ P L+++E ++ +R RDY+ + I++D K ++ + +G P Sbjct: 171 WDVLVRRSKVGRGPQLLYRELDLAIRLVRDYVTDRVERIIVDEEKTCRRLQEMLRDMGLP 230 Query: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 ++KLY G+ LF+ Y+++ IES R V LP GG +VID TEA+T ID+NS + + Sbjct: 231 GI--QVKLYRGKEDLFTFYRLDEDIESLSDRVVWLPGGGYLVIDCTEAMTVIDVNSGKFS 288 Query: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 G D + T+ TN EAA EIARQLRLRD+GG+IV DFIDM Q + L++ D Sbjct: 289 TGADRDATSMATNREAAREIARQLRLRDIGGIIVADFIDMDREEEQEEILQILKKEFASD 348 Query: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 + + ++ +++ L+EM+R + +L + CP C G+G V E++ + I R + Sbjct: 349 KMKPKVIDLTQLNLVEMTRMKARKNLAGILYTTCPLCGGSGRVESPETVYVEIRRRLRST 408 Query: 431 ALKENTQEVHAIV 443 L+ HA++ Sbjct: 409 FLQGKMS--HALL 419 >UniRef50_Q4JWU2 Ribonuclease E n=2 Tax=Corynebacterium jeikeium RepID=Q4JWU2_CORJK Length = 1013 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 143/411 (34%), Positives = 225/411 (54%), Gaps = 22/411 (5%) Query: 16 VALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAR 75 V +V+ +L + + H+ N+Y G++ + S+EAAFVD G R+ L E+ Sbjct: 352 VGVVEDGQLVEHFVADATHQSLIGNVYLGRVQNVLGSMEAAFVDIGTGRNAVLYAGEM-- 409 Query: 76 EYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPR 135 ++ + + R I LR G +++VQ+ K+ G+KGA LT IS AG YLV P Sbjct: 410 DWRSPHLHSKSR-KIDQALRPGDQILVQVLKDPIGHKGARLTNRISFAGRYLVYFPAGTT 468 Query: 136 AGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIK 195 AG ISR++ +R LK+ L + +G G I+RTA + E + D+ K W+ I+ Sbjct: 469 AG-ISRKLPAGERKRLKDILGEVITGDG-GAIIRTAAENATEEQITEDVQRLEKRWQEIQ 526 Query: 196 KAAESR-----PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGR- 249 K P +++E N++++ RD D E++ID K + R + LGR Sbjct: 527 KLENKERNSKGSKPVTLYEEPNMLIQVVRDVFNADFSELIIDGDKSWQAVRDY---LGRT 583 Query: 250 -PDFSSKIKLYT-----GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAID 303 P+ ++ + G+ F+ ++ Q+E A R+V LPSGG ++ID TEA+T ID Sbjct: 584 SPELMDRVHKWNRGKHDGQ-DAFAPLDLDQQLEKAMARKVWLPSGGYLIIDHTEAMTVID 642 Query: 304 INSAR-ATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENR 362 +N+ GG++E T NLEAA+EI RQLRLRD+GG+IV+DFIDM ++Q V R Sbjct: 643 VNTGSFVGSGGNLEATVTENNLEAAEEIVRQLRLRDIGGMIVVDFIDMLLQQNQDLVLRR 702 Query: 363 LREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 L E + +DR R ++ ++ GL++++R+RL L E+ C C G G + Sbjct: 703 LSEFLGRDRTRHKLGEVTSLGLVQLTRKRLGTGLLETFSTPCEACDGRGFI 753 >UniRef50_Q31PW1 Ribonuclease, Rne/Rng family n=19 Tax=Cyanobacteria RepID=Q31PW1_SYNE7 Length = 808 Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 138/378 (36%), Positives = 212/378 (56%), Gaps = 9/378 (2%) Query: 39 ANIYKGKITRIEPSLEAAFVDYG-AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREG 97 +IY G + + P ++AAFV+ G +E++GF+ + ++ + A I ++L Sbjct: 89 GDIYLGVVENVLPGIDAAFVNIGDSEKNGFIHVTDLGPLRLRRSAGA-----ITELLAPQ 143 Query: 98 QEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALAS 157 Q+V+VQ+ KE +KG LT ISL G YLVLMP + +SRRI + AL+ Sbjct: 144 QKVLVQVMKEPTSSKGPRLTGNISLPGRYLVLMPYSSGVS-LSRRIMSESERNRLRALSV 202 Query: 158 LELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRA 217 L P GMGL+VRT G + E + DL + WE + A+S PAP L+ ++ + I R Sbjct: 203 LIKPAGMGLLVRTEADGIAEELIIEDLESLQRQWEQTLQLADSTPAPALLTRDDDFIQRV 262 Query: 218 FRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKL--YTGEIPLFSHYQIESQI 275 RD + + I++D+ L+ +QH++A G + + + + Y + ++++ + I Sbjct: 263 LRDMYDEGVNRIVVDSHTGLKRVKQHLSAWGAGEIAPGLLIEQYRDRSSILDYFRVNAAI 322 Query: 276 ESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLR 335 A + V LPSGG ++I+ TEALT +D+NS TR ET TN EAA EIARQLR Sbjct: 323 REALKPRVDLPSGGYVIIEKTEALTVVDVNSGSFTRSATARETVLWTNCEAAAEIARQLR 382 Query: 336 LRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPS 395 LR++ G+I++DFIDM R Q V A+R D++R QIS +S GL+E++R+R + Sbjct: 383 LRNIAGVIIVDFIDMDSRRDQLQVLEHFTRALRHDKSRPQISQLSELGLVELTRKRQGQN 442 Query: 396 LGESSHHVCPRCSGTGTV 413 + E C C G G V Sbjct: 443 IYELFSTPCTTCGGLGHV 460 >UniRef50_Q2GES6 Ribonuclease, Rne/Rng family n=2 Tax=Neorickettsia RepID=Q2GES6_NEOSM Length = 549 Score = 240 bits (612), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 141/428 (32%), Positives = 235/428 (54%), Gaps = 19/428 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK++LI+ ++ E R+A++ L D E +K NIY+G + +++ SL+AAFV+Y Sbjct: 1 MKKILID-SRDGETRLAILRSGLLVGYDCEHTNSLPQKGNIYQGIVFKVDDSLQAAFVEY 59 Query: 61 GAERHGFLPLKEIAREYF------PANYSAHGRP-------NIKDVLREGQEVIVQIDKE 107 +GFLP EI YF AN A G+ N +V+++G + VQ+ KE Sbjct: 60 LPGEYGFLPFSEIPVIYFDLLEEVKANAIAEGKHVNLYKHFNATEVIKKGLVLFVQVTKE 119 Query: 108 ERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPE-GMGL 166 +R K LT ++ L G Y VLMP + +S++I + A E+ G+ Sbjct: 120 KRRTKDVTLTAYVKLPGRYCVLMPF-LKDLILSKQIVDEQAVSRLTHFAEEEMANRKCGV 178 Query: 167 IVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDI 226 + + + + D L WE + + AP L+ +E+N++ + RD + Sbjct: 179 VFKPYCADADKKNILGDYCSLLSEWEKVVSQNDKSKAPRLVFREANLVKKFLRDSYDGSV 238 Query: 227 GEILIDNPKVLELARQHIAALGRPDFSS-KIKLYTGEIPLFSHYQIESQIESAFQREVRL 285 GE+++++ V + A+ +I F + I LY+ +P+F Y++E Q++ ++ + L Sbjct: 239 GEVIVNHSDVYQEAKDYIQ--NSLHFENPNITLYSDTLPVFDKYKVEPQVDGLYEETIYL 296 Query: 286 PSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVI 345 +G IVI++TEALTA+D+NS R + +IEETA+ N+EA EI R L LR + G++VI Sbjct: 297 RNGAYIVINTTEALTAVDVNSGRMKKESNIEETAYKVNMEAVAEIVRHLELRGIAGIVVI 356 Query: 346 DFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCP 405 DFIDM ++ VE L +A ++ R+R+QI+ I++FGL+ +S+QR ++ +S CP Sbjct: 357 DFIDMNNSKYMLNVERALLDAFKRYRSRVQIAPINKFGLIALSKQRTKHNILDSHTVKCP 416 Query: 406 RCSGTGTV 413 C G G V Sbjct: 417 CCEGKGKV 424 >UniRef50_C5CEM0 Ribonuclease, Rne/Rng family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEM0_KOSOT Length = 481 Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 154/443 (34%), Positives = 244/443 (55%), Gaps = 29/443 (6%) Query: 5 LINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAER 64 ++ ++ ++E+R+A++D ++ ++ E +E NIY GKI + PSLEAAFV+ G + Sbjct: 12 IVFSSLEDEVRIAILDEGKIQEVFFEEMDNESYMGNIYLGKIENVVPSLEAAFVNIGIGK 71 Query: 65 HGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAG 124 +GFL K+ R N K L +G++V+VQ+ K+ G+KG LT IS+ G Sbjct: 72 NGFLRFKDT-------------RNNQK--LEKGKKVLVQVKKDPIGSKGPQLTLKISIPG 116 Query: 125 SYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDL 184 LV MP + G IS++I E ++A + G+I RTA G + L+ +L Sbjct: 117 RCLVYMPFSKHVG-ISKKITDQAERERLISIAKGIIENDEGIIFRTAANGVGEDTLREEL 175 Query: 185 SFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHI 244 W+ I + P ++++E +++ R+ L +D+ EI++D+ + H Sbjct: 176 ENLRTIWKKINEKFRRARKPQILYEEPSLVEYILRERLTEDVKEIVVDSEDL-----WHD 230 Query: 245 AALGRPDFSSKIK---LYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTA 301 G F S K Y E F H I +++ + R V LP+GG+I ID TEA+T Sbjct: 231 VVAGISKFKSGFKPIVRYVEE-DAFLHEGIYEKMKVLYTRVVPLPNGGNIFIDKTEAMTV 289 Query: 302 IDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVEN 361 ID+NSA T G D+ E + NTNLEAA EIARQLRLR++GG+IVIDFIDM ++ V + Sbjct: 290 IDVNSASNTHGSDVSEMSLNTNLEAAVEIARQLRLRNIGGIIVIDFIDMKSEADRKKVIS 349 Query: 362 RLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRD----NE 417 L E +++D+A I +R GLLEM+R+R + ++ + CP C GTG + + Sbjct: 350 LLSEELKKDKAHSLILGFTRLGLLEMTRKRSTATINSRIYSTCPICRGTGQIESPKITYQ 409 Query: 418 SLSLSILRLIEEEALKENTQEVH 440 L + RL +++ +K T +V+ Sbjct: 410 RLVSDLQRLFKDKKIKSATVQVY 432 >UniRef50_P0A9J2 Ribonuclease G n=523 Tax=cellular organisms RepID=RNG_ECO57 Length = 489 Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 156/436 (35%), Positives = 249/436 (57%), Gaps = 24/436 (5%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 +L+N T E RVA +DG L ++ IE NIYKG+++R+ P ++AAFVD G + Sbjct: 5 LLVNVTPSET-RVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDIGLD 63 Query: 64 RHGFLPLKEIAREYFPANYSAHGRP-------NIKDVLREGQEVIVQIDKEERGNKGAAL 116 + FL +I P G +I +++R+GQ+++VQ+ K+ G KGA L Sbjct: 64 KAAFLHASDI----MPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARL 119 Query: 117 TTFISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGK 175 TT I+L YLV MP G +S+RIE + +R LK+ +A +G G I+RTA G Sbjct: 120 TTDITLPSRYLVFMPGASHVG-VSQRIESESERERLKKVVAEYCDEQG-GFIIRTAAEGV 177 Query: 176 SAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDN-- 233 L D ++ + W + + + + ++ E + R RD+ ++ I +D+ Sbjct: 178 GEAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRL 237 Query: 234 --PKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSI 291 +LE ++I P+ +SK++ YTG P+F + +E++I+ A +R+V L SGG + Sbjct: 238 TYEALLEFTSEYI-----PEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYL 292 Query: 292 VIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMT 351 +ID TEA+T +DIN+ ++++T FNTN+EA IARQLRLR+LGG+I+IDFIDM Sbjct: 293 IIDQTEAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMN 352 Query: 352 PVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTG 411 H+R V + L +A+ +DR + ++ S GL+EM+R+R S+ + CP C G G Sbjct: 353 NEDHRRRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRG 412 Query: 412 TVRDNESLSLSILRLI 427 TV+ E++ I+R I Sbjct: 413 TVKTVETVCYEIMREI 428 >UniRef50_B1I4P9 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I4P9_DESAP Length = 416 Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 163/415 (39%), Positives = 243/415 (58%), Gaps = 10/415 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 +KR +I +T+ RVAL++ + ++ IE +I+KG + + P +EAAFV+ Sbjct: 2 LKREIIVSTRDNATRVALLENRVPMEVYIEPDEEICLVGSIFKGVVENVLPGIEAAFVNV 61 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +R+ FL + ++ + A+ SA G I+D+L GQEVIVQ+ K+ GNKG +T + Sbjct: 62 GLDRNAFLYVNDVLPQSARADQSAAG---IRDLLHPGQEVIVQVAKDPLGNKGPRVTMRV 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 +L G Y VLMP GISRRIE + +R L+E + PEGMG IVRTA G +AE Sbjct: 119 NLPGHYTVLMPTVNHV-GISRRIEDESERERLREVVHRAR-PEGMGAIVRTAARGIAAEV 176 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 L D+ K W I+K AP L+++E ++ R RD ++I +++D+ Sbjct: 177 LADDIRELEKLWRDIQKREAGAAAPSLLYRECGLLPRIIRDLFTEEIERLVLDS--FTSY 234 Query: 240 ARQ-HIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 AR I P S++ + + +F Y + +I A QR+ L GG ++ D EA Sbjct: 235 ARSLTILDTVNPQLKSRV-FWEDKPDIFEAYNVNQEINKALQRKTWLRCGGYLIFDQAEA 293 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 LT ID+N+ R T D+E+T + TNLEAA EIARQLRLR+LGG+I+IDFIDM+ H+ Sbjct: 294 LTVIDVNTGRFTGRVDLEDTVYKTNLEAAVEIARQLRLRNLGGIIIIDFIDMSHEEHRNR 353 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 V L E +++DR R I ++R GL+E++R+++ PSL E CP+C GTG + Sbjct: 354 VLEVLGEEIKKDRRRTHIMGLTRLGLVELTRKKVHPSLAELLLTNCPQCGGTGKI 408 >UniRef50_P72656 Ribonuclease E homolog n=10 Tax=Cyanobacteria RepID=RNE_SYNY3 Length = 674 Score = 238 bits (608), Expect = 7e-61, Method: Compositional matrix adjust. Identities = 138/379 (36%), Positives = 210/379 (55%), Gaps = 9/379 (2%) Query: 36 QKKANIYKGKITRIEPSLEAAFVDYG-AERHGFLPLKEIAREYFPANYSAHGRPNIKDVL 94 Q+ +IY G + I PS++AAF++ G E++GF+ + ++ P +I ++L Sbjct: 32 QQVGDIYLGLVDNILPSIDAAFINIGDTEKNGFIHVSDLG----PVRLRRTAG-SISELL 86 Query: 95 REGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEA 154 Q V+VQ+ KE GNKG LT IS+ G Y+VLMP R +SRRI ++ A Sbjct: 87 SPQQRVLVQVMKEPTGNKGPRLTGNISMPGRYMVLMPYG-RGVNLSRRINREEERSRLRA 145 Query: 155 LASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVI 214 LA L P GMGL+VRT +A+ DL K WE +++ A +R AP L+ ++ + I Sbjct: 146 LAVLIKPPGMGLLVRTEAEDVPEDAIIEDLENLQKQWELVQQQAMTRSAPMLLDRDDDFI 205 Query: 215 VRAFRDYLRQDIGEILIDNPKVLELARQHIAAL--GRPDFSSKIKLYTGEIPLFSHYQIE 272 R RD ++ I++D P ++ +Q + GR I + + + ++++ Sbjct: 206 KRVLRDMYSSEVNRIVVDTPAGMKRIKQQLMNWDQGRLPEGVLIDCHRESLSILEYFRVN 265 Query: 273 SQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIAR 332 + I A + V LPSGG I+I+ TEALT ID+NS T + ET TN EAA EIAR Sbjct: 266 ATIREALKPRVDLPSGGYIIIEPTEALTVIDVNSGSFTHSANSRETVLWTNYEAATEIAR 325 Query: 333 QLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRL 392 QL+LR++GG+I+IDFIDM + Q + + D+AR QI+ ++ GL+E++R+R Sbjct: 326 QLKLRNIGGVIIIDFIDMDSHKDQLQLLEHFNRCLETDKARPQIAQLTELGLVELTRKRQ 385 Query: 393 SPSLGESSHHVCPRCSGTG 411 +L E CP C G G Sbjct: 386 GQNLYELFGQPCPECGGLG 404 >UniRef50_D1BNE2 Ribonuclease, Rne/Rng family n=3 Tax=Veillonella RepID=D1BNE2_VEIPT Length = 475 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 151/439 (34%), Positives = 243/439 (55%), Gaps = 33/439 (7%) Query: 1 MKRMLINATQQEELRVALVD--GQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFV 58 M ++L+N +EE+R+A++D GQ L D +E ++YKG + + ++AAFV Sbjct: 1 MHKILVN-VMREEIRMAVIDEEGQ-LVDFVLERTDDSHMANHMYKGTVKNVLNGMQAAFV 58 Query: 59 DYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 D G ++ +L L++ + S GQ+++VQ+ KEE KGA +T Sbjct: 59 DIGGSQNAYLNLQQGKEQKILPRLSV------------GQQILVQVVKEEMLGKGARVTA 106 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSA 177 +SLAG ++VL+P + IS++I + R++L+E LA+ + EG G I+RTA SA Sbjct: 107 DVSLAGRFMVLLPYSE-GMHISKKITDEALRSKLQE-LAAPYVQEGCGFIIRTAAAKASA 164 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDN---- 233 + + D+ + + W+ + K + + ++ +++ R RDY +++ EI++D+ Sbjct: 165 DEIGRDMEYLWRTWQHVLKRFKVAKSGTDLYSDADFWFRLVRDYAHRNVEEIIVDSDMGE 224 Query: 234 PKVLELARQHIAALGRPDFSSKIKL--YTGEIPLFSHYQIESQIESAFQREVRLPSGGSI 291 ++L+L LG S +IK+ + P+F IE Q+E R++ LPSGGSI Sbjct: 225 SRLLDL-------LGHGPTSQQIKVTRHRDSTPIFKANHIEPQLEDLISRDINLPSGGSI 277 Query: 292 VIDSTEALTAIDINSARAT-RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDM 350 ID TEALT D+NSA T + +E+ AF N EAA EI RQLRLRD+GG+IV+DFIDM Sbjct: 278 RIDHTEALTVFDVNSAHYTGKSNKLEDLAFTVNKEAAKEICRQLRLRDIGGIIVVDFIDM 337 Query: 351 TPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGT 410 HQ+ + L + D+ + + IS GL+EM+R+R L CP+C GT Sbjct: 338 KDKEHQQELLKLLGVQAKLDKMKTVVCGISSLGLVEMTRKRARQGLQTLMFDTCPQCGGT 397 Query: 411 GTVRDNESLSLSILRLIEE 429 G + ++ + I+R I E Sbjct: 398 GYMLSGRTVYMQIVRRIRE 416 >UniRef50_Q2JW46 Ribonuclease, Rne/Rng family n=4 Tax=Synechococcus RepID=Q2JW46_SYNJA Length = 711 Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 141/379 (37%), Positives = 215/379 (56%), Gaps = 11/379 (2%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGA-ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREG 97 ++Y G + + PS++AAFV+ G+ ER+GF+ + ++ N+++ I +++ Sbjct: 35 GDVYVGIVENVLPSIDAAFVNIGSGERNGFIHVSDLGPLRLKRNHAS-----ISELVLPQ 89 Query: 98 QEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALA 156 Q+V+VQ+ KE GNKG LT ++ G YLVL P + +SRRIE ++R LK +LA Sbjct: 90 QKVLVQVMKEPTGNKGPRLTGDLAFPGRYLVLRPYG-KGVHLSRRIEDREERNRLK-SLA 147 Query: 157 SLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVR 216 L P MGL+VRT G S EA+ DL K WE I++ ++ P L+ ++ + I R Sbjct: 148 ILIKPPQMGLLVRTEAEGVSEEAMIEDLEQLKKLWEDIQQQYQAARGPGLLSRDDDFIQR 207 Query: 217 AFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKL--YTGEIPLFSHYQIESQ 274 RD +D+ I+ D+P + R ++ + + + + P+ ++++ + Sbjct: 208 VLRDVYSEDVNRIVTDSPAGAKRVRSYLQGWNKGQMPPGVVVDAHREPTPILEYFRVNAV 267 Query: 275 IESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQL 334 I A + V LPSGG IVI+ TEALT ID+NS T+ ET TN EAA EIARQL Sbjct: 268 IRQALRPRVDLPSGGYIVIEPTEALTVIDVNSGSFTQSATSRETVLWTNCEAATEIARQL 327 Query: 335 RLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSP 394 RLR++ G+IV+DFIDM R Q V +A+ D+AR Q+ +S GL+E++R+R Sbjct: 328 RLRNIAGVIVVDFIDMDSRRDQLLVLEHFNKALSSDKARPQVVQLSELGLVELTRKRQGQ 387 Query: 395 SLGESSHHVCPRCSGTGTV 413 SL E H CP C G G + Sbjct: 388 SLYEIFGHSCPTCEGLGIL 406 >UniRef50_C1F7B7 Ribonuclease, Rne/Rng family, insertion n=2 Tax=Bacteria RepID=C1F7B7_ACIC5 Length = 1013 Score = 236 bits (603), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 132/329 (40%), Positives = 197/329 (59%), Gaps = 4/329 (1%) Query: 88 PNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD- 146 P I D+L++GQE++VQI KE KGA +T+ I+L G +LV MP G+SR+I D Sbjct: 615 PIISDLLKQGQEILVQIAKEPIAKKGARITSHIALPGRFLVFMPTVNHV-GVSRKISSDE 673 Query: 147 DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFL 206 +R LK L S + G IVRTA G + L+ D+ F + W IK+ ++S AP L Sbjct: 674 ERQRLKRILISEKGDATGGFIVRTAAEGAGEDELRADIRFLINLWNEIKERSDSGKAPAL 733 Query: 207 IHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLF 266 I+ + N++ R RD + ++ I +D+ E + + +P ++KLYT E+PLF Sbjct: 734 IYHDLNLVERILRDQVSEEFSTIWVDSETDYERIVRFLNRF-QPSLVRRVKLYTKEMPLF 792 Query: 267 SHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT-RGGDIEETAFNTNLE 325 + I+ +I A + +V L SGGSIVI+ TEAL AIDIN+ + + +E+T TNL+ Sbjct: 793 EQFGIQDEITKALKSKVWLKSGGSIVINQTEALVAIDINTGKYVGKTARLEDTIVKTNLD 852 Query: 326 AADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLL 385 A EI RQ+RLRDLGG+IVIDFIDM +++ V L E ++ DRA ++ + FGL+ Sbjct: 853 AIPEIVRQIRLRDLGGIIVIDFIDMDERKNRHKVLQALEEELKHDRAPSKVLQFNDFGLV 912 Query: 386 EMSRQRLSPSLGESSHHVCPRCSGTGTVR 414 ++R+R+ SL + C C+GTG V+ Sbjct: 913 AITRKRVKQSLERTLSIPCNICTGTGMVK 941 Score = 49.7 bits (117), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K + I++T E R+A+++ +L ++ E +IYKG++TR+ P +++AFVD G Sbjct: 3 KEICISSTPHE-TRLAILEDDQLAEIYYERENEYTLAGSIYKGRVTRVLPGMQSAFVDIG 61 Query: 62 AERHGFLPLKEIARE 76 ER FL + + E Sbjct: 62 LERDAFLYVTDFLEE 76 >UniRef50_Q1IRN1 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRN1_ACIBL Length = 1031 Score = 234 bits (598), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 135/337 (40%), Positives = 196/337 (58%), Gaps = 6/337 (1%) Query: 81 NYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGIS 140 N + P I D+L+EGQE++VQI KE G KGA +T+ I+L G +LV MP G+S Sbjct: 626 NMQSRNTPLISDLLKEGQEILVQIAKEPIGKKGARITSHIALPGRFLVYMPTVNHV-GVS 684 Query: 141 RRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH-WEAIKKAA 198 R+I D +R LK ++S G IVRTA + L+ D+ F LKH W IK + Sbjct: 685 RKIASDEERQRLKRIVSSERENGHGGFIVRTAAANVKEDELRADIRF-LKHLWSEIKGRS 743 Query: 199 ESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKL 258 + +P LI+ + N++ R RD + D I +DN E + A+ +P +IKL Sbjct: 744 DKSKSPALIYHDLNLVERVLRDQVTSDFTTIWVDNESEYERVLR-FASRFQPSLVRRIKL 802 Query: 259 YTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT-RGGDIEE 317 YT PLF + I+ +I A + +V L SGG IVI+ TEAL AIDIN+ + + +E+ Sbjct: 803 YTKNTPLFEEFGIQEEINKALKAKVWLKSGGYIVINQTEALVAIDINTGKYVGKTTRLED 862 Query: 318 TAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQIS 377 T TN++A EI RQ+RLRDLGG+IVIDFIDM ++++ V L EA++ DRA ++ Sbjct: 863 TIVKTNVDAIKEIVRQIRLRDLGGIIVIDFIDMDERKNRQKVMAALEEALKSDRAPSKVL 922 Query: 378 HISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVR 414 + FGL+ ++R+R+ SL + C C TG V+ Sbjct: 923 QFNDFGLVAITRKRVKQSLERTLGTPCSYCEATGFVK 959 Score = 53.9 bits (128), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 26/73 (35%), Positives = 42/73 (57%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + L ++ E RVALV+ +L ++ E +IYKG++TR+ P +++AFVD Sbjct: 1 MNKELYVSSNPHETRVALVEDDQLAEIFYERENEYTLAGSIYKGRVTRVLPGMQSAFVDV 60 Query: 61 GAERHGFLPLKEI 73 G ER FL + + Sbjct: 61 GLERDAFLYVSDF 73 >UniRef50_A6CTK6 Cytosolic axial filament protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CTK6_9BACI Length = 494 Score = 232 bits (592), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 150/483 (31%), Positives = 259/483 (53%), Gaps = 37/483 (7%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M R+++NA +E+ L DG + + P E NIY G++ ++E L AAF++ Sbjct: 10 MNRIIVNALGREKRWARLRDGI-MESFHVYQPEKESIAGNIYIGRVDKVEKGLNAAFINI 68 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++GFL ++++A EY + I +L +GQ++IVQ+ K+ G KG +T I Sbjct: 69 GEGKNGFLHIEDLA-EYMLLDEKERKTAEINRLLHQGQKLIVQVKKDPAGTKGPRVTGII 127 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 + G+ LV +P+ R +S++ +++ + S E G++ RTA +GK+ + + Sbjct: 128 EMKGTSLVYLPHG-RYTAVSKKASSEEQKKKWRRFGSRIKEEEEGIVFRTAALGKAEKEI 186 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDI---------GEILI 231 Q + K ++ + ++ S+ APFL+H++ D +++DI EI+ Sbjct: 187 QNEYLGLKKQYQELYSSSLSKKAPFLLHRQ---------DVMKEDILEEIKKVKQAEIIT 237 Query: 232 DN----PKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPS 287 D+ + E + A+LG +I + +F HY++E+QIE A ++ V L + Sbjct: 238 DDYSWKNEFQEFLHNNKASLG-----GEITHFQSHENIFVHYRVETQIEKAMKKVVWLDN 292 Query: 288 GGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDF 347 G +IVI+ TEALT ID+N+ + T D+ +T TN AA EIARQL++R+L G+I+IDF Sbjct: 293 GATIVIEPTEALTVIDVNTGKFTGKSDLSQTVLKTNELAAKEIARQLKIRNLSGIILIDF 352 Query: 348 IDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRC 407 I+M +HQ V N L+E +++D R I + G+L+++R++ P L E CP C Sbjct: 353 IEMKSEQHQTEVVNALKEGLKEDGKRTTIVGFTELGILQLTRKKTKPPLLEYISCRCPIC 412 Query: 408 SGTGTVRDNESLSLSILRLI-------EEEALKENTQEVHAIVPVPIASYLLNEKRSAVN 460 SG G V ES++ + R + E++ + E T++V + + YL ++S Sbjct: 413 SGYGMVESAESMAYKLERELYELYPADEDKVIIEATEDVQKVFKGESSQYLKEMEKSINK 472 Query: 461 AIE 463 IE Sbjct: 473 KIE 475 >UniRef50_B0TWF6 Ribonuclease G n=17 Tax=Francisella RepID=B0TWF6_FRAP2 Length = 509 Score = 231 bits (590), Expect = 8e-59, Method: Compositional matrix adjust. Identities = 156/446 (34%), Positives = 252/446 (56%), Gaps = 31/446 (6%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 + +N + E+ R+A+ + L ++ IE ++ NIYKGKI R+ P ++AAFVD G E Sbjct: 18 IFLNINKYEQ-RIAIKENNILKEILIERDNQKRIVGNIYKGKIIRVLPGMQAAFVDIGLE 76 Query: 64 RHGFLPLKEI---------AREYFPANYSAHGRPNIKDV---LREGQEVIVQIDKEERGN 111 + GFL L E+ + E F N + N +D+ LREGQEV+VQ+ KE GN Sbjct: 77 KAGFLHLSEVIPLERDDEESDENFKLN-----KLNTEDINKWLREGQEVLVQVVKESIGN 131 Query: 112 KGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEG-MGLIVR 169 KG LT+ +S++ +LV +P+ GIS +I +++ L +++ + E G I+R Sbjct: 132 KGVKLTSHLSVSSRFLVFLPDLDHI-GISLKISKEEEKQRLLDSIKKITQSENPRGYILR 190 Query: 170 TAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEI 229 TA G S E L+ D+ F W+ I + + P +++++ ++I++ + + +I Sbjct: 191 TAAEGASYEELENDIKFLNNLWQDILDISSTIIKPGVVYEDFSLIIKTINIFANDNPDKI 250 Query: 230 LIDN----PKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRL 285 +D+ ++ + A ++I P KI+LY +F Y I+ +I A + V L Sbjct: 251 HVDDIDSYKEICQFADKYI-----PGLRDKIELYQKH-NIFEEYDIDVEINKALDKTVYL 304 Query: 286 PSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVI 345 SGG +VI+ TEA+ IDIN+ ++EET F TNLEA EIARQLRLR+LGG+I+I Sbjct: 305 KSGGYLVIEQTEAMITIDINTGGFIGTKNLEETIFKTNLEATKEIARQLRLRNLGGIIII 364 Query: 346 DFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCP 405 DFIDM H+ V L++ + D+A+ +S IS GL+EM+R+R+ SL + C Sbjct: 365 DFIDMMDESHKNQVLEALKKELELDKAKTSVSDISELGLVEMTRKRVHESLLRTLCQPCE 424 Query: 406 RCSGTGTVRDNESLSLSILRLIEEEA 431 C+G G+V+ +++ I R I+ E+ Sbjct: 425 HCNGKGSVKTLQTICYDIFREIKSES 450 >UniRef50_C9LKU5 Cytoplasmic axial filament protein n=1 Tax=Dialister invisus DSM 15470 RepID=C9LKU5_9FIRM Length = 472 Score = 231 bits (590), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 150/435 (34%), Positives = 240/435 (55%), Gaps = 30/435 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M R++++ + E + +A+ +L DL+IE + + IYKG + I P+++ FVD Sbjct: 1 MNRVILSDSTDETI-LAVTRQHKLVDLEIEQQINTEIVGCIYKGIVKNIVPAVDGIFVDI 59 Query: 61 GAERHGFLPLKEIAREY-FPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G ++ FL K++ E FP EG ++ Q+ K + KGA +T Sbjct: 60 GIGKNAFLRRKDLLNEKRFPT---------------EGSPILAQVIKSDTDMKGALITEK 104 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAE 178 IS+ G Y V + G +S++I + R LKE + E MGLI+RTA + Sbjct: 105 ISMLGKYAVTLSGTGYIG-VSKKIRSESVRKRLKEIGKEI-CAEHMGLIIRTAAENADMD 162 Query: 179 ALQWDLSFRLK-HWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 + D++ RLK +W+ I+K +P L+++ES++IV+A RDY+ + ++ DN K+ Sbjct: 163 EFRKDIT-RLKENWDIIQKRFRMEKSPTLLYRESDIIVKALRDYVNKGTEILITDNRKIY 221 Query: 238 ELARQHIAALGRPDFS---SKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVID 294 E I L + + KI LY +PL +IE QI F+R V LPSGGS++I+ Sbjct: 222 E----RICKLNESEHTIEPDKISLYKERMPLLKKEEIEEQIHLLFKRRVELPSGGSLIIE 277 Query: 295 STEALTAIDINSARATRGGD-IEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPV 353 TEALT ID+NS R G EE + N EAA EIARQ+RLR +GG+I+IDFIDM Sbjct: 278 DTEALTVIDVNSGAFNRQGIPHEEAVYLINQEAAIEIARQVRLRGIGGMILIDFIDMQKE 337 Query: 354 RHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 ++ + L+ +++D+ + + ++ GL+EM+R+R + SL ++ +CP C+GTG + Sbjct: 338 NQKKDIVGILQRELKKDKVKSIVCGMTSLGLVEMTRKRTTHSLIKNYCDICPICNGTGHI 397 Query: 414 RDNESLSLSILRLIE 428 +S+ I R +E Sbjct: 398 LSVQSVIQQIHRELE 412 >UniRef50_A7H8A5 Ribonuclease, Rne/Rng family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7H8A5_ANADF Length = 740 Score = 228 bits (582), Expect = 7e-58, Method: Compositional matrix adjust. Identities = 141/349 (40%), Positives = 212/349 (60%), Gaps = 12/349 (3%) Query: 89 NIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-D 147 NI+D+L+EGQEVIVQ+ K+ G KGA +T+ ISL G +LV MP GISRRIE D + Sbjct: 299 NIQDLLKEGQEVIVQVAKDPIGTKGARITSHISLPGRHLVFMPTVDHI-GISRRIEKDSE 357 Query: 148 RTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLI 207 R L+E + + P+G G IVRT A L+ D+ F ++ W I + + AP L+ Sbjct: 358 RRRLREIVDRMR-PDGTGFIVRTVAENVEAGKLEADIRFLIQVWNEIIRTKDKVSAPALL 416 Query: 208 HQESNVIVRAFRDYLRQDIGEILIDN----PKVLELARQHIAALGRPDFSSKIKLYTGEI 263 H + ++I+RA RD D+G+++ID+ ++L + P S+I+ Y GE Sbjct: 417 HGDLDLILRATRDLFTADVGKLVIDDRDEYERILRFVHEQA-----PHLESQIEYYRGEE 471 Query: 264 PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTN 323 P+F Y IE +++ A QR+V L SGG I++D EALTAID+NS R ++EET N Sbjct: 472 PIFDAYGIEQELKRASQRKVWLKSGGYIIMDQAEALTAIDVNSGRYVGKKNLEETITKIN 531 Query: 324 LEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFG 383 +EAA EI QLRLR++GG+I+IDFIDM +++ V L++A+ +D+A+ + IS G Sbjct: 532 VEAAKEIVYQLRLRNIGGIIIIDFIDMDKPQNRDKVFKALQDALGRDKAKTNVLKISELG 591 Query: 384 LLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEAL 432 L+EM+R+R+ S+ + C C G G ++ +++ I R I EA+ Sbjct: 592 LVEMTRKRVRESVTRVMNEPCSYCEGKGHLKSKITITYEIFREIRREAV 640 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 ++INA E RVALV+ +++ +E + NIYKG++ R+ P ++AAFVD G + Sbjct: 7 LVINAAGAE-TRVALVENNTIHEYYLERKREKGIVGNIYKGRVVRVLPGMQAAFVDIGLD 65 Query: 64 RHGFLPLKEI 73 + FL + ++ Sbjct: 66 KAAFLYVGDV 75 >UniRef50_B2V9I2 Ribonuclease, Rne/Rng family n=4 Tax=Hydrogenothermaceae RepID=B2V9I2_SULSY Length = 470 Score = 226 bits (576), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 140/397 (35%), Positives = 215/397 (54%), Gaps = 26/397 (6%) Query: 26 DLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAH 85 +L IE ++ +IYKGK+ R ++EA FVD G ++ FLP K+I E Sbjct: 26 ELKIEDIEISKQTGSIYKGKVLRYSQAMEAFFVDIGEDKEAFLPKKDICEE--------- 76 Query: 86 GRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIE- 144 + + +G ++VQ+ + KGA L+ ISL G YLVL+P + IS + E Sbjct: 77 ----VCKNIDKGSSILVQVKRSPVSTKGAKLSCKISLPGKYLVLLPQSKGKISISSKYED 132 Query: 145 GDDRTELKEALASL--ELP-EGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESR 201 D+R E+KE + +L E+ E GLI+RTA EA+ D F ++ W I+K + Sbjct: 133 NDERNEIKERIKNLLHEINQENFGLIIRTAAKDAPDEAILEDFKFLIELWNQIQKDYNKK 192 Query: 202 PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSS-KIKL-- 258 AP +I++E RDY EI+ D+ +L+L ++ + +F++ IK+ Sbjct: 193 KAPSVIYEEPFKAFAILRDY-AGSFSEIISDDVSILKLIKKFVL----ENFTNANIKMTP 247 Query: 259 YTG-EIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEE 317 Y + LF Y+++ I L SG +VI TEAL ID+NS + ++EE Sbjct: 248 YRKRKESLFYEYELDKLINKILSPYAYLKSGSYLVIQETEALVVIDVNSGSCHKQKNLEE 307 Query: 318 TAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQIS 377 TAF NLEA EI RQ+RLRDL G++VIDFIDM H+ A+ RL+E ++D+ ++I Sbjct: 308 TAFRINLEAIPEIVRQIRLRDLSGIVVIDFIDMINQEHKEAIVERLKEEFKKDKRPVKIK 367 Query: 378 HISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVR 414 +++ GLLE+SR++L SL + C C G G ++ Sbjct: 368 GLTQLGLLELSRKKLEESLIKQLSDYCQHCYGRGYIK 404 >UniRef50_A9RK39 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RK39_PHYPA Length = 727 Score = 226 bits (575), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 118/330 (35%), Positives = 189/330 (57%), Gaps = 15/330 (4%) Query: 96 EGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEAL 155 EG +IVQ+ KE G KG LT F SLAG + VL+P + G+S RI G +R LK Sbjct: 273 EGMPIIVQVKKESMGKKGPRLTAFPSLAGRFWVLIPRG-NSVGVSARITGPERRRLKLLA 331 Query: 156 ASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKA----------AESRPAPF 205 L+ PE +G+ VRT +G E L+ DL+ + W+ I + E P Sbjct: 332 QKLQ-PEDLGITVRTEAIGHEQEELERDLTRLMDAWKEIMEKAAAAAVAVERGEEAAVPV 390 Query: 206 LIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPL 265 L+H+E + RD + + +++D+ + + ++ + P +++ LY+G++P+ Sbjct: 391 LLHREMGQTLTIIRDLFTEKVSRVVVDSAQSFQEVINYLQEVA-PHLMNRVVLYSGKVPI 449 Query: 266 FSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIE--ETAFNTN 323 F + +ES ++ F V+LP+GG +V+ TEAL +ID+N G ++ E N N Sbjct: 450 FDKFNVESDLDKFFSERVKLPNGGYLVMQETEALVSIDVNGGTGMLGHSMKQREAILNVN 509 Query: 324 LEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFG 383 L AA +IA ++RLRD+GG+IV+DFIDM ++ V +R A+++DR+++ IS IS +G Sbjct: 510 LAAAKQIAHEIRLRDIGGIIVVDFIDMDNHEDEKLVYEEMRRAIQRDRSKVSISEISEYG 569 Query: 384 LLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 L+EM+R+R+ PS+ + H C C GTG V Sbjct: 570 LMEMTRKRVRPSVTYTIHSSCACCKGTGRV 599 Score = 49.3 bits (116), Expect = 9e-04, Method: Compositional matrix adjust. Identities = 23/79 (29%), Positives = 44/79 (55%), Gaps = 3/79 (3%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 +LIN ++ R+A+++ +++ + IE + + NIY G++ ++ P + FVD G Sbjct: 74 ILINTSECTMQRMAILENKKVVEFSIEPVNTKVQVGNIYLGRVKQLLPGMSGVFVDIGGP 133 Query: 64 RHGFLPLKEIAREYFPANY 82 R L L +IAR +P + Sbjct: 134 R---LALLDIARNQYPYTF 149 >UniRef50_Q11NU1 Ribonuclease G n=10 Tax=Bacteroidetes RepID=Q11NU1_CYTH3 Length = 535 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 147/475 (30%), Positives = 253/475 (53%), Gaps = 34/475 (7%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 + I+++Q + R+AL+ +RL + E + +IY G + ++ P L AAF+D G E Sbjct: 5 LFISSSQSGD-RIALIQEKRLVEYQFEDHTRKFNVGDIYLGTVRKVVPGLNAAFIDVGYE 63 Query: 64 RHGFL-------PLKEIAREYFPAN-YSAHGRP----------------NIKDVLREGQE 99 + FL +K + + F N ++ P + VL +G Sbjct: 64 KDAFLHYFDLGPKIKSLTK--FTKNAITSASTPALLKKFELEAEIKKDGKVSQVLEKGNP 121 Query: 100 VIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALASL 158 ++VQ+ KE KG L+ ISLAG YLVL+P + +S++I + ++R L ++S+ Sbjct: 122 ILVQVVKEPISTKGPRLSCEISLAGRYLVLVPFS-NVVSVSKKITDKEERQRLVRLISSI 180 Query: 159 ELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWE-AIKKAAESRPAPFLIHQESNVIVRA 217 PE G+I+RT K L DL +K WE I ++RP +I E + Sbjct: 181 R-PENFGVIIRTVASNKEVAELDKDLRNLVKTWEDGIAILKKARPRDLII-GELDRTSSI 238 Query: 218 FRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIES 277 RD L + I +D ++ + R +I + PD +KL+ G+ +F +E Q+++ Sbjct: 239 LRDMLNESFDSINVDTKELYDDLRSYIKNIA-PDKERLVKLHQGKTKMFESTGVEKQLKT 297 Query: 278 AFQREVRLPSGGSIVIDSTEALTAIDINSA-RATRGGDIEETAFNTNLEAADEIARQLRL 336 F + V L GG ++I+ TEAL ID+NS ++ EETA +TNLEA E+ARQLRL Sbjct: 298 LFGKSVSLSGGGYLIIEHTEALHVIDVNSGNKSNNETSQEETALHTNLEACREVARQLRL 357 Query: 337 RDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSL 396 RD+GG+IV+DFIDM + +++ + R++ ++ DR++ I +S+FGL++++R+R+ P Sbjct: 358 RDMGGIIVVDFIDMKNLDNRKVIYERMKLEMKDDRSKNVILPLSKFGLMQITRERVRPQT 417 Query: 397 GESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYL 451 + VCP C+GTG + + +++ I ++ K+N + + ++ I +Y Sbjct: 418 NLITMEVCPTCNGTGKISASIAITDQIEHKLDYIITKQNEKNITLVLHPYIYAYF 472 >UniRef50_B3QZC2 Ribonuclease, Rne/Rng family n=12 Tax=Chlorobiaceae RepID=B3QZC2_CHLT3 Length = 582 Score = 222 bits (565), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 126/344 (36%), Positives = 195/344 (56%), Gaps = 5/344 (1%) Query: 94 LREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKE 153 L+ ++VQ+ KE NKGA LT+ I++AG ++VL+P IS+RI + Sbjct: 174 LKPNDSILVQVIKEPISNKGARLTSDITIAGRFMVLLPFGSGHLAISKRIVNRRERRRLK 233 Query: 154 ALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNV 213 + LP+G G IVRT + L+ DL L W+ I++ + P LI +E + Sbjct: 234 GIVRSILPKGFGAIVRTVAEEQDELLLKTDLEKLLAKWKQIEETVKDAKPPKLIFKEDTM 293 Query: 214 IVRAFRDYLRQDIGEILIDNPKVLE--LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQI 271 I RD L +D+ E++ ++ + + L AA P+ ++ Y G++PLF Y I Sbjct: 294 ISSVLRDSLTEDVTELVTNSQHIYKETLTFVRWAA---PEMEKRVSHYKGKLPLFESYGI 350 Query: 272 ESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIA 331 +ES F R+V L SGG ++I+ TEA+ ID+NS R + EE + TNLEAA EI+ Sbjct: 351 AKDVESIFSRKVWLKSGGYLIIEHTEAMVVIDVNSGRYAAKREQEENSLKTNLEAAKEIS 410 Query: 332 RQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQR 391 RQLRLRD+GG+IV+DFID+ ++ R V + ++ R+DRA+ I +S FGL++++R+R Sbjct: 411 RQLRLRDIGGIIVVDFIDLLDEKNARKVYDTMKTEFRRDRAKSNILPMSEFGLMQITRER 470 Query: 392 LSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKEN 435 + PSL + CP C G+G V+ + I R + + AL N Sbjct: 471 IRPSLMQRMGDECPACGGSGVVQARHTTIHQINRWLRKYALNGN 514 Score = 50.4 bits (119), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 25/73 (34%), Positives = 45/73 (61%), Gaps = 1/73 (1%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K++L+N + +E++VALV+ RL ++ IE P + +IY G++ ++ L+AAF+D G Sbjct: 6 KQLLMNKSG-DEVQVALVEDGRLAEVFIERPESTRNVGDIYLGRVQKVVEGLQAAFIDIG 64 Query: 62 AERHGFLPLKEIA 74 GFL ++ Sbjct: 65 HSSDGFLHFSDVG 77 >UniRef50_A5WCI8 RNAse G n=4 Tax=Moraxellaceae RepID=A5WCI8_PSYWF Length = 613 Score = 222 bits (565), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 136/378 (35%), Positives = 213/378 (56%), Gaps = 10/378 (2%) Query: 94 LREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDD-RTELK 152 L EGQ+++VQ+ K++ G KGA LTT ISL YLV +P++ G IS+RI+ ++ R LK Sbjct: 213 LHEGQKILVQVTKDQLGTKGARLTTNISLPSRYLVYLPSSEHIG-ISQRIDNEEERHRLK 271 Query: 153 EALASLELPEGM--GLIVRTAGVGKSAEALQWDLSFRLKHWEAIKK----AAESRPAPFL 206 L +L + GLI RTA L+ D+ + ++ W I+ +A S + L Sbjct: 272 TELGALMQTVNLTGGLIARTAAERVPVAKLEEDIYYLVQLWRTIQARKEASAGSGQSAVL 331 Query: 207 IHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLF 266 I+QE ++ +R+ RD + D ++++D+ + RQ A P +I Y+GE PLF Sbjct: 332 IYQELSLPLRSIRDLVHPDTEKVIVDHEGMYNEVRQ-FAKEFVPFIYPRILPYSGEQPLF 390 Query: 267 SHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEA 326 +++E + A +R V L SGG ++ID TEA+T ID+N+ G +E+T + TNLEA Sbjct: 391 DVHRVEEDLRDALKRRVDLKSGGYLIIDQTEAMTTIDVNTGSFVGGRSLEDTVYKTNLEA 450 Query: 327 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLE 386 IARQLRLR+LGG+I++DFIDM +H+ V L+ + QD A+ +I+ +S GL+E Sbjct: 451 THAIARQLRLRNLGGIIILDFIDMLEQQHKDDVLENLQYQLSQDYAKTKITQVSELGLVE 510 Query: 387 MSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVP-V 445 M+R+R SL + C C G G ++ E++ I R I A N+ + +V Sbjct: 511 MTRKRTRESLEQQLCEPCKTCEGKGFIKTAETVCFEIFREIMRCARTYNSPKKFTVVAHA 570 Query: 446 PIASYLLNEKRSAVNAIE 463 + LL+ + V +E Sbjct: 571 SVIDLLLSSEADTVADLE 588 Score = 46.2 bits (108), Expect = 0.006, Method: Compositional matrix adjust. Identities = 27/77 (35%), Positives = 42/77 (54%), Gaps = 1/77 (1%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 +LIN + E RVA++D + ++ IE NIY G + R+ P ++AAFV+ G Sbjct: 5 LLINVSPMES-RVAVLDNGVVSEVYIERHNKLGLVGNIYLGTVVRVLPGMQAAFVEIGQS 63 Query: 64 RHGFLPLKEIAREYFPA 80 R FL + ++ R PA Sbjct: 64 RTAFLHVNDMRRIARPA 80 >UniRef50_D0MD03 Ribonuclease, Rne/Rng family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MD03_RHOM4 Length = 604 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 129/317 (40%), Positives = 193/317 (60%), Gaps = 3/317 (0%) Query: 93 VLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELK 152 +L+ Q ++V+I KE +KG+ ++T ISLAG +LVL+P +S++I Sbjct: 180 LLKRDQPLLVKIIKEPISSKGSRVSTDISLAGRFLVLVPFANYVA-VSKKITSYKERRRL 238 Query: 153 EALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAI-KKAAESRPAPFLIHQES 211 ALA LPEG G+IVRT G++A+AL DL L+ WE I KK AE P L+H++ Sbjct: 239 RALARSLLPEGFGVIVRTVAEGQTAKALDTDLRLLLEKWERIEKKLAEHPKPPVLLHEDV 298 Query: 212 NVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQI 271 N++ RD +D IL+DNP++ R ++ A+ P ++LY G+ +F I Sbjct: 299 NMVSSVIRDLFSEDCTRILVDNPRLHRNIRSYVQAVA-PHKVEVVQLYRGKEHIFKATGI 357 Query: 272 ESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIA 331 Q+ AF+ V LPSGG + I+ TEA+ ID+NS RA RG EE + NLEAA IA Sbjct: 358 AEQVAQAFESRVDLPSGGYLYIEHTEAMHVIDVNSGRAGRGLSQEENSLRVNLEAARVIA 417 Query: 332 RQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQR 391 +Q+R+RDLGG+IVIDFID+ ++++ V + L++ R+DRA +I +S FGL++++RQR Sbjct: 418 QQVRVRDLGGIIVIDFIDLKDEKNKKKVYDELKKEFRKDRAVTKILPMSDFGLVQITRQR 477 Query: 392 LSPSLGESSHHVCPRCS 408 L PSL + + R + Sbjct: 478 LRPSLTTTFDKMAERLA 494 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 29/73 (39%), Positives = 48/73 (65%), Gaps = 1/73 (1%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K ++INA ++++ R+A+V+ L + IE P HE+ NIY ++ R+ PS++AAFVD G Sbjct: 3 KEIIINA-EKDQTRIAIVEDGTLAEFYIEDPEHERTIGNIYLARVCRVMPSIQAAFVDIG 61 Query: 62 AERHGFLPLKEIA 74 ++ FL +IA Sbjct: 62 QQQDAFLHFSDIA 74 >UniRef50_C0ZAL2 Putative ribonuclease G n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZAL2_BREBN Length = 491 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 146/449 (32%), Positives = 245/449 (54%), Gaps = 13/449 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK++ I+ TQ +R+A ++ +L + + +IY+G+I ++P +++AFVD Sbjct: 1 MKQVAIS-TQGGSIRIAFMENGKLQEWRTQDVRSHASVGDIYQGRIADVKPGIQSAFVDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++ +L + + +PNI + + GQ+V+VQ+ KE K +T I Sbjct: 60 GTGQNAYLYVDDTV----GVESGGTAKPNIAERVHVGQKVLVQVSKEAMEMKAPKITMRI 115 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLV +P +SR+I D + + + + S + +G G I+RT + L Sbjct: 116 SLQGRYLVYLPTEESIS-LSRKISDDTKRKRLQQVISSTVEQGEGCILRTEAAEAEEQTL 174 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 +L++ W+ +++ AE + I Q++ +I A RD L + E+L++ + Sbjct: 175 IRELTYLRNRWQDMRRTAEGLRSTGRIFQDAELIEVALRDGLANGMDELLVEGAATHQQV 234 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + +AA P+ K++ Y G+ PLF + +E+++ A R+V L SGGS+VID TEA+T Sbjct: 235 KAALAAFA-PEVQEKLRWYQGKQPLFDYLGVEAELIRARDRQVPLKSGGSLVIDRTEAMT 293 Query: 301 AIDINSARATR-GGDIEETAFN-TNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 ID+N+ T GG E A TNLEA EIARQLRLRD+GG+++IDFIDM ++ Sbjct: 294 VIDVNTGSFTGAGGQQREQAVTATNLEAVAEIARQLRLRDIGGIVIIDFIDMKEQGNKER 353 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 V +RL++ + +D + ++ GL+EM+R+R+ SL E C C+G G V + Sbjct: 354 VISRLKQELAKDPVPSTVLGMTSLGLVEMTRKRVRASLMERLTEPCEACAGRGRVWRVDE 413 Query: 419 LSLSILRL-IEEEALKENTQEVHAIVPVP 446 L + RL +E AL ++ A+V +P Sbjct: 414 L---LRRLYVEVTALAKSQDAEAALVDMP 439 >UniRef50_D1I512 Whole genome shotgun sequence of line PN40024, scaffold_57.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1I512_VITVI Length = 934 Score = 221 bits (562), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 155/521 (29%), Positives = 260/521 (49%), Gaps = 72/521 (13%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA- 62 +LIN++ R+A+++ L +L +E + ++Y G +T++ P + AFV+ G Sbjct: 344 ILINSSICTMQRIAVLEDGSLVELLLEPVKSNVQCDSVYLGVVTKLVPHMGGAFVNIGIQ 403 Query: 63 ------ERH---------------------------GFLPLKEIAREYFPANY------- 82 E H FLP+ E+ + + + Sbjct: 404 FAHDDFEEHEVEDDFDVLIKKDLNGSIVDHDSETINNFLPV-ELEKGFHDSQLPPLLEMK 462 Query: 83 ---SAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGI 139 A+ N +++G ++IVQ+ KE G KG LT + L + VL+ R G + Sbjct: 463 DSRQAYTVENKWAQVQKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTCCNRIG-V 521 Query: 140 SRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAE 199 S++I G +RT L+ +L+ P+G GL VRT G + E LQ DL L W+ I + A+ Sbjct: 522 SKKISGVERTRLRVIAKTLQ-PKGFGLTVRTVAAGHTLEELQKDLEGLLSTWKNIVEHAK 580 Query: 200 SRPA----------PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGR 249 S P ++H+ + +DY + + +++D+P+ ++ + Sbjct: 581 SAALAADEGVEGAIPVILHRAMGQTLSVVQDYFNEKVESMVVDSPRTYHEVTNYLQEIA- 639 Query: 250 PDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARA 309 PD +++LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N Sbjct: 640 PDLCDRVELYNKRVPLFDEFNIEEEINNILSKRVPLPNGGSLVIEQTEALVSIDVNGGHG 699 Query: 310 TRGGDI--EETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAV 367 G E+ + NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV Sbjct: 700 MLGNGTSQEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMLDDSNKRLVYEEVKKAV 759 Query: 368 RQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLS----- 422 +DR+ +++S +SR GL+E++R+R+ PS+ C C GTG V E+ S S Sbjct: 760 ERDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHGTGRVEALET-SFSKIEQE 818 Query: 423 ---ILRLIEEEALKENTQE---VHAIVPVPIASYLLNEKRS 457 +L + EE+A EN +V + +YL + KR+ Sbjct: 819 ICRLLAMTEEKADPENPNSWPRFILMVDRFMCNYLTSGKRT 859 >UniRef50_A7HQG8 Ribonuclease, Rne/Rng family n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HQG8_PARL1 Length = 506 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 148/410 (36%), Positives = 221/410 (53%), Gaps = 25/410 (6%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKA-----------NIYKGKITRIEPS 52 +LIN E RVA+V+ R +L +E + KA NI+ G++ R+ P Sbjct: 5 VLINVGPGET-RVAIVEDGRPVELFLERTMEDDLKAKTGRAGHSLIGNIFLGRVQRVLPG 63 Query: 53 LEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGR-PNIKDVLREGQEVIVQIDKEERGN 111 ++AAFV+ G ER GFL +E AR G P I ++EGQ ++VQ K+ + Sbjct: 64 MQAAFVEVGLERAGFLGARE-ARCLCELTGLDEGTLPPISACVQEGQTILVQAVKDPISD 122 Query: 112 KGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTE----LKEALASLELPEGM--- 164 KGA L+ +++ G LVL+PN +SRRIE + E L E + P G+ Sbjct: 123 KGARLSANVTIPGRLLVLVPNQSGVA-LSRRIEDEPERERLAALVEEMVERFNPMGVTGE 181 Query: 165 --GLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYL 222 G IVRTA +G +AE + D + W +++ + AP ++ + + + + RD + Sbjct: 182 PAGFIVRTAAIGATAEDIAADARQLAEEWRKVRETEKRSTAPCVVFHDLDPVSKTLRDCV 241 Query: 223 RQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQRE 282 D +LID A+++ P+ +I+L+ G LFS Y ++ +IE+A + Sbjct: 242 SADTSRVLIDCADAFGEAQRY-CRRAMPEMLDRIQLFNGPGQLFSLYDVDGEIEAALEPR 300 Query: 283 VRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGL 342 LPSGG I +++TEALTAID+NS R T +EET+ NLEA EI QLRLR GGL Sbjct: 301 AELPSGGWITVETTEALTAIDVNSGRYTAATGLEETSVKINLEAVHEIVYQLRLRGTGGL 360 Query: 343 IVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRL 392 IVIDFI + + + V + L E +DR QIS +S FGL+EM+R+R+ Sbjct: 361 IVIDFIHLNDPANIQKVIDALNEGFAKDRVPTQISGMSEFGLVEMTRKRV 410 >UniRef50_B6YQX9 Ribonuclease G n=23 Tax=Bacteroidales RepID=B6YQX9_AZOPC Length = 518 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 153/520 (29%), Positives = 270/520 (51%), Gaps = 44/520 (8%) Query: 5 LINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAER 64 L+ Q + + +A+++ + L + E NIY G++ ++ P L AAFVD G E+ Sbjct: 5 LVIDVQPQIISIAVLEDKNLVEFRKEVRDLSFSVGNIYLGRVKKMMPGLNAAFVDIGGEK 64 Query: 65 HGFLPLKEIA------REYFPANYSAHGRP----------------NIKDVLREGQEVIV 102 FL +++ + +S P +I D+L++G V+V Sbjct: 65 GAFLHYRDLGGNINSLNTFLKKVFSEKRIPPIGKFLCSSAEVAKDISITDILKQGDNVLV 124 Query: 103 QIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELP 161 QI KE KG LT+ +S+ G L+++P R IS +I+ D +R LK+ + S++ P Sbjct: 125 QIVKEPIATKGPRLTSELSIVGRCLIVIPFGDRV-SISLKIQSDKERIRLKQLVCSIK-P 182 Query: 162 EGMGLIVRTAGVGKSAEALQWDLSFRLKHW-EAIKKAAESRPAPFLIHQESNVIVRAFRD 220 + +IVRT+ GK A L +L +K W + I K S+ +P LI++E+ ++ RD Sbjct: 183 KNFSVIVRTSAKGKQASELDKELKILVKRWNDNIVKLINSK-SPSLIYEETGRVLALLRD 241 Query: 221 YLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQ 280 I I++ + R +++ + P S+ +KLY GE P+F ++ I Q++S F Sbjct: 242 NFDSSFEHIYINDENMFNEVRDYLSLID-PQKSNIVKLYKGEFPIFDNFVITKQLKSKFG 300 Query: 281 REVRLPSGGSIVIDSTEALTAIDINSAR---ATRGGDIEETAFNTNLEAADEIARQLRLR 337 + + L +G +VI+ TEA+ ID+NS T + E+ + N+ AA+EIA+QLRLR Sbjct: 301 KIITLKNGAYLVIEHTEAMYVIDVNSGNRLALTANTNQEDVIVDVNMSAAEEIAKQLRLR 360 Query: 338 DLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLG 397 D+GG+IVIDFIDM +++ + + + + +DRA+ + +S+ GL+E++R+R+ P+L Sbjct: 361 DMGGIIVIDFIDMYEQVNRQKLYDSMCNFMAKDRAKHHVFPLSKVGLMEITRKRIRPALD 420 Query: 398 ESSHHVCPRCSGTGTVR----DNESLSLSILRLIEEEALKENTQEVHAIVP--VPIASYL 451 ++ C G GT++ + L I ++++ +KE + +H V V + Sbjct: 421 FNAMETCSVPLGKGTIKPSIFFTDMLDEKIKIVVKKMGVKEFSLHIHPYVAAFVKKGFFS 480 Query: 452 LNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRK 491 LN K ++ G+R I+P+ +E Y +K Sbjct: 481 LNMKWKIKYSV-----GIR--IIPDQSLEILGYKFFNKKK 513 >UniRef50_A2BYM7 S1 RNA binding domain:Ribonuclease E and G n=8 Tax=Prochlorococcus marinus RepID=A2BYM7_PROM5 Length = 608 Score = 218 bits (555), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 133/380 (35%), Positives = 213/380 (56%), Gaps = 14/380 (3%) Query: 39 ANIYKGKITRIEPSLEAAFVDYG-AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREG 97 +I+ G + + P ++AAF+ G +E++GF+ + ++ P G I ++L Sbjct: 35 GDIFLGTVENVLPGIDAAFIHIGESEKNGFIHVSDLG----PLRLKK-GVVGITELLEPK 89 Query: 98 QEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALA 156 Q+V+VQ+ KE GNKG LT ISL G YL+L P + ISR+I D +R+ L+ AL Sbjct: 90 QKVLVQVMKEPTGNKGPRLTGNISLPGKYLILQPF-GQGVNISRKINTDTERSRLR-ALG 147 Query: 157 SLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVR 216 L P GL+ RT E L DL ++ W+ + K +E+ P LI+++ + ++ Sbjct: 148 VLIKPPSTGLLFRTEAEKIKEELLIEDLENLIQQWDQVLKISETCQPPNLINRDEDFSLK 207 Query: 217 AFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIP--LFSHYQIESQ 274 RD ++ +++IDN LE A+ + D + + L+ +I + YQI Sbjct: 208 ILRDCIKASTSKVVIDNKVALEKAKDFLI---NNDSNVDLVLHNNDINEHILEKYQINKT 264 Query: 275 IESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQL 334 I+ A + V LPSGG I+I+ TEALT ID+NS TR + +T TN EAA EI+RQ+ Sbjct: 265 IQKALEPRVDLPSGGYIIIEPTEALTVIDVNSGSFTRSANSRQTVLWTNCEAAVEISRQM 324 Query: 335 RLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSP 394 +LR++GG++VIDFIDM R Q + + A++ D AR QI+ ++ GL+E++R+R Sbjct: 325 KLRNIGGVLVIDFIDMESRRDQFQLLEQFTLAIKDDSARPQIAELTELGLVELTRKRQGQ 384 Query: 395 SLGESSHHVCPRCSGTGTVR 414 ++ E C C+G G ++ Sbjct: 385 NIYELFGKKCNACNGLGHIK 404 >UniRef50_C9M9G5 Ribonuclease G n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M9G5_9BACT Length = 495 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 148/424 (34%), Positives = 233/424 (54%), Gaps = 23/424 (5%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 ++ N +EE RVA+V+ RL DL +E Q+ +IY ++ I + AAF++ G Sbjct: 6 KIYANMLDEEERRVAVVEDGRLRDLYVEHGRPVQQSGDIYLARVESIVSGMNAAFLNLGD 65 Query: 63 ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISL 122 R+GFL L + +S H E E+IVQ+ K R +KGA +T +SL Sbjct: 66 GRNGFLYLAD------AKGFSVH----------ENGELIVQVTKTPRRSKGARVTPQVSL 109 Query: 123 AGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQ 181 G + V +P G +SR+I DR L+ + S+E G+I+RTA + E L Sbjct: 110 PGRFFVYLPFAGSVG-VSRKIGSAKDRQRLRALVGSVERG---GVIIRTAAQDAADEDLA 165 Query: 182 WDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELAR 241 DL+ + WE I+++A+ R +P ++ QE ++RA RD L I E++ D+ + + + Sbjct: 166 ADLAQLQEQWERIEQSAKLRMSPGVLWQEDGFLIRALRDELAHHISEVVTDSREAFDAVK 225 Query: 242 QHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTA 301 ++A G +S ++ L I LF + + +IES + +V LPSGG +VID TEALTA Sbjct: 226 GFVSAAG-AGWSGQVSLLEKGIDLFEYCGLTQEIESLIRPKVLLPSGGYLVIDQTEALTA 284 Query: 302 IDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVEN 361 ID+NS + G + T TNLEAA EIARQ+RLR +GG++++DFIDM + AV + Sbjct: 285 IDVNSGKCVDGSSLSATVKTTNLEAAREIARQIRLRAIGGIVIVDFIDMESEADRTAVLD 344 Query: 362 RLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSL 421 L++A D ++++ ++ GL E++R+R L C C T +D E+L+ Sbjct: 345 ALKDASAADPNKVRVYGMTSLGLAEVTRKRTRLDLRSQMTQPCSSCCEGRTWKD-EALAA 403 Query: 422 SILR 425 S+ R Sbjct: 404 SVKR 407 >UniRef50_A8F3K6 Ribonuclease, Rne/Rng family n=1 Tax=Thermotoga lettingae TMO RepID=A8F3K6_THELT Length = 470 Score = 217 bits (552), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 148/443 (33%), Positives = 238/443 (53%), Gaps = 22/443 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M L+ Q+E++ VA++ L + I S E NIY G+I +I P L AAFV+ Sbjct: 1 MANQLVINIQEEKVNVAILSDGVLQE--IFSEEDESLSGNIYVGRIEKIIPGLNAAFVNI 58 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+GFL L +I ++Y K ++EG +++VQ+ + G KG LT I Sbjct: 59 GGNRNGFLKLTDITKQYIS--------EVTKSPVKEGIKILVQVKHDAIGTKGPQLTGKI 110 Query: 121 SLAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 SLAG +LV P + + G+S+++ E +R L+E S L + G+++RTA E Sbjct: 111 SLAGRFLVYFPLS-KVRGVSKKVQEPKERVRLQEL--SRSLAKNDGVVIRTAAEFVPEEY 167 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + + + W + ++ + L+ +E + R+ L +DI E+ ++ ++ E Sbjct: 168 VAEEFNQLKSEWRKVLQSFKRARKIKLLRREPTTVDYILRERLNKDIDEVHVNTREIYEK 227 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 ++ L + K +Y E LF I SQI +R + LPSGG I +D+TEA+ Sbjct: 228 VKEVSKRLAK-----KPMIYFFEGDLFDKLCIYSQIGQLQERIIHLPSGGYIALDTTEAM 282 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T D+NSA + + A+ TN+EAA EIARQLRLR++GG++++DFIDM + + Sbjct: 283 TVFDVNSASFVSEKNHADLAYKTNVEAAYEIARQLRLRNIGGIVIVDFIDMPSKTYYDRL 342 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 L++A+R D A I++ ++ GLLEM+R+R SPS+ + CP C GTG V S Sbjct: 343 TKELQQAIRNDSAHIELIGFTKLGLLEMTRKRRSPSIDQLLFSGCPICKGTGRV---VSP 399 Query: 420 SLSILRLIEEEALKENTQEVHAI 442 + + R+I E + EN E ++ Sbjct: 400 HIVVRRVINELSKIENISEYSSV 422 >UniRef50_A9VIS0 Ribonuclease, Rne/Rng family n=78 Tax=Bacillus RepID=A9VIS0_BACWK Length = 469 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 132/426 (30%), Positives = 232/426 (54%), Gaps = 29/426 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 +K + IN T E+ RVA+ + Q++ +L + ++ +IY G+I R + AAFV+ Sbjct: 8 LKTLYINYTGSEK-RVAIEEKQKIVELLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNI 66 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G E+H +L ++ P++Y H EGQ ++VQ+ KE KG LT I Sbjct: 67 GLEKHAYLSFDDV-----PSSYRIH----------EGQAILVQVVKEAIDTKGPKLTAKI 111 Query: 121 SLAGSYLVLMP-NNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 G Y+V MP + RA +SR+I+ + R ++ L +E+ G I R+A + + Sbjct: 112 EFTGKYVVYMPYDEMRA--VSRKIKNNKR---RQQLLGIEVEGTGGYIFRSASEKGTIDE 166 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 +Q ++ + +E +K+ + AP L+HQ + + R F++ + I +I++D +++ Sbjct: 167 IQAEMQGLQQLYEELKRKEDQGKAPLLLHQPATFLDRVFQENPIETIEKIVVDTRSIVKE 226 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + + ++ Y + +F+H+ I+ +IE A Q+ V LP+G ++++ E + Sbjct: 227 LEEKVG-------KERVAFYNEKSSMFNHFGIDREIEKALQKIVWLPNGAYLIVEQMETM 279 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+N+ + T ++++T F TN AA+EIARQLRLRD+GG+I+IDFI+M + V Sbjct: 280 TVIDVNTGKFTGKQNLQDTVFRTNEMAAEEIARQLRLRDIGGMILIDFINMKRREDKEKV 339 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 RL A++ DR ++ + G+LEM+R+R SL + C C TG V NE++ Sbjct: 340 RERLMIALQDDRTYTRVLGFTELGILEMTRKRKKHSLRDVLLEECAPCKATGYVISNETI 399 Query: 420 SLSILR 425 + + R Sbjct: 400 AYELER 405 >UniRef50_B0K422 Ribonuclease, Rne/Rng family n=12 Tax=Thermoanaerobacterales RepID=B0K422_THEPX Length = 474 Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 145/422 (34%), Positives = 244/422 (57%), Gaps = 18/422 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKR++++ + ++AL++ +L + E + NIYKGKI + ++AAFVD Sbjct: 1 MKRLILDIDENLS-QIALLENGKLKEYHPEKRDGKNILGNIYKGKIQNVLKGMQAAFVDI 59 Query: 61 GAERHGFLPLKEIA--REYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 G ++ FL ++ +E P +I VL+ GQ ++VQ+ KE G K +T Sbjct: 60 GIGKNAFLFFDDVLFQQENLP--------KSITQVLKPGQPIMVQVSKEAVGMKNPRVTA 111 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSA 177 ISL G Y+VLMPN GIS RIE + +R L+E + L+ PEG+G+IVRTA + + Sbjct: 112 NISLPGKYVVLMPNVDYI-GISHRIEEEVERKRLQEIVKKLK-PEGIGIIVRTAALEATE 169 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 + ++ DL ++ +E I+K ++ P P LI++E + ++ RD L ++ EI++++ + Sbjct: 170 QQIREDLEELIRLYEKIQKDFQNAPLPSLIYKEEDFAIKYLRDLLSDEVDEIVVNDKEEY 229 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 E ++++ +G+ + S + E L Y + Q++ +++V L SGG ++ID TE Sbjct: 230 ENIKRYLKNVGKENISVTYE----EGDLLGIYGADFQVDKLLEKKVWLKSGGFVIIDQTE 285 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 ALT ID+N+ + +EET + TNLEAA+EIA QL+LRD+GG+I+IDFIDM +R Sbjct: 286 ALTVIDVNTGKYVGKSSLEETIYKTNLEAAEEIALQLKLRDIGGIIIIDFIDMKNENFKR 345 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 + + +++DR + + ++ GL+EM+R+R+ +G CP C G G V E Sbjct: 346 DLLEFFKRELQKDRTKCTVLGYTQLGLVEMTRKRVRSQVGSYLKEKCPICEGEGMVYSTE 405 Query: 418 SL 419 + Sbjct: 406 YI 407 >UniRef50_D2LS23 Ribonuclease, Rne/Rng family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LS23_BACS4 Length = 456 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 130/375 (34%), Positives = 207/375 (55%), Gaps = 10/375 (2%) Query: 41 IYKGKITRIEPSLEAAFVDYGAERHGFLPLKE-IAREYFPANYSAHGR-PNIKDVLREGQ 98 ++ G++ I P +EAAFV+ GA+++GFL E IA + + + P I +L+EGQ Sbjct: 1 MFIGRVEDIVPGMEAAFVNIGADKNGFLYRNELIAYDTLKDDKEPDVKQPTIASMLKEGQ 60 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASL 158 +IVQ+ KE G KG LT ISL G Y+V +P +S+++ ++R +E A Sbjct: 61 SIIVQVTKEAVGAKGVRLTEKISLPGKYIVYLPYGNYVA-VSKKMNEENRKGWREK-ARE 118 Query: 159 ELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAF 218 + + G+I+RT S E + + + + + + AE P ++ +S++I R Sbjct: 119 WIEDREGIIIRTNAEDASHEEIYHEFTLLRHQHQQMLQQAEKVNVPNVLLNQSSLISRVQ 178 Query: 219 RDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESA 278 RDYL EI++D+ + E L I LY + +FS+Y IE +E A Sbjct: 179 RDYLTNKNSEIVVDHFESYE------QLLNSSLEGCNIHLYQEKEDIFSYYDIEKHLEKA 232 Query: 279 FQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRD 338 +V L SGG ++I+ TEALT ID+N+ + T ++ +T TN+EAA +A+QLRLR+ Sbjct: 233 LHEKVWLKSGGFLIIEKTEALTVIDVNTGKFTGKHNLRDTVVKTNIEAAYAVAQQLRLRN 292 Query: 339 LGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGE 398 +GG+I+IDFIDM Q++V L+EA + DR ++ + FGL+EM+R++ L + Sbjct: 293 IGGIILIDFIDMKVESDQKSVLKALKEATKNDRTLTNVAGFTNFGLVEMTRKKARKPLHD 352 Query: 399 SSHHVCPRCSGTGTV 413 C C GTG V Sbjct: 353 IMMESCSVCKGTGQV 367 >UniRef50_A9BIJ0 RNA binding S1 domain protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIJ0_PETMO Length = 471 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 134/413 (32%), Positives = 233/413 (56%), Gaps = 22/413 (5%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K ML+ + EE+R+A+++ +L ++ E ++ I+ G I PSLEA FV+ G Sbjct: 5 KTMLV-SKALEEIRIAILEEDKLSEIFFEDFETDRNIGKIFLGIIENRVPSLEAFFVNIG 63 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFIS 121 ++GFL +++ + P Y G +++VQ+ K+ KG L+ IS Sbjct: 64 LGKNGFLRYRDVLDD--PNQYKV------------GDKILVQVRKDGGTRKGPQLSMQIS 109 Query: 122 LAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 L G YLV +PN+ + GISR+I + +R L++ + L + +I RT G + + Sbjct: 110 LPGKYLVYIPNSNESIGISRKILQEKERIRLRQVAKKI-LIDNESIIFRTNSEGIDEKEV 168 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 + +LS K + +I + S+ P ++++ES+ + R+ L +I+ D+ ++ Sbjct: 169 EVELSEMRKMYNSILQRFHSQKNPGVLYEESDFLEYILRERLDSKTKKIITDDRQIFRKL 228 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++ + + K++ G++ F + I Q+E F +++ L GG+I +D TEALT Sbjct: 229 KKSLKGF---ELKPKVEFVRGDV--FQIHNIYHQMEEIFTKKIELSGGGTITVDRTEALT 283 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AID++SA G +IEET+F TN+EAA EIARQL+LR++GG+IV+DFIDM H++ + Sbjct: 284 AIDVDSAGNLEGKNIEETSFITNMEAAKEIARQLKLRNIGGMIVVDFIDMKDSSHKKTII 343 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 N L+E ++D++++ I + GLLE+ R+R + L + + CP C GTG + Sbjct: 344 NILKEESKKDKSKVTILGFTNMGLLEIIRKRTTQPLDTNVYSQCPLCHGTGKI 396 >UniRef50_Q3AF57 Ribonuclease, Rne/Rng family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AF57_CARHZ Length = 392 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 133/385 (34%), Positives = 209/385 (54%), Gaps = 36/385 (9%) Query: 35 EQKKAN-IYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDV 93 EQ + N IY GK+ ++ P L+AAFV+ G ++G+LPL EI N+K Sbjct: 34 EQTQINDIYLGKVEKVVPGLQAAFVNLGLAKNGYLPLDEI---------------NVK-- 76 Query: 94 LREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKE 153 G V+V++ K KGA L+T ISL G LV P G ISR++ D R Sbjct: 77 --PGDVVLVRVVKNPTAQKGAKLSTVISLPGRNLVYFPQKEMKG-ISRKLTEDKREYYHR 133 Query: 154 ALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNV 213 L +L LP G IVRT G+ + LQ + + W+ I + +++ AP L+++E ++ Sbjct: 134 VLENLNLPGGF--IVRTLA-GEEEDLLQ-EAKRLYEEWQGILERSKTAQAPALLYKEDDL 189 Query: 214 IVRAFRDYLRQDIGEILIDNPKVLELA---RQHIAALGRPDFSSKIKLYTGEIPLFSHYQ 270 R+ L +D + +D+ ++LE+ R+ L P + S + + Sbjct: 190 FTWCLRELLDKDFTALYVDDFELLEIGQKFRERFRVLLPPIYKS--------FNVMEEFN 241 Query: 271 IESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEI 330 + +E + V L +GG +VI+ TEALTAID+NS + T D++ETAF NLEAA EI Sbjct: 242 LIRTMEKLTRERVWLKNGGILVIEKTEALTAIDVNSGKFTGKKDLKETAFKINLEAAREI 301 Query: 331 ARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQ 390 A+Q+RLR++GG+IV+DFI + + + E +D+A+++I+ + GL+E++RQ Sbjct: 302 AKQIRLRNIGGIIVVDFISLLEEERWEEILRVMEEEFLRDKAKVKITGKTPSGLVEIARQ 361 Query: 391 RLSPSLGESSHHVCPRCSGTGTVRD 415 ++ S+GE H C C GTG + D Sbjct: 362 KIGLSIGELFTHECSVCQGTGRITD 386 >UniRef50_Q5WES2 Ribonuclease G n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WES2_BACSK Length = 497 Score = 206 bits (525), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 134/415 (32%), Positives = 216/415 (52%), Gaps = 10/415 (2%) Query: 18 LVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREY 77 L++ + + ES Q +++ GK+ R+ P +EAAFVD G ++GFL E+ + Sbjct: 18 LLENNEVVEWFFESNDRPQMVGSVFLGKVERVLPGMEAAFVDIGTGKNGFLHRDELLAFH 77 Query: 78 F-PANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRA 136 P++ + +I + G + VQ+ KE KG L+ +S+ G Y+V MP Sbjct: 78 LDPSDLTEKQTKSISQFVSPGDTIAVQVTKEGTNEKGPRLSGVVSIPGKYVVYMPEGAYV 137 Query: 137 GGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIK 195 +SRRIE + R L AL + +L G IVRTA E ++ DL F W+ Sbjct: 138 A-VSRRIESEHVRASLHTALEN-KLQHNEGAIVRTAAANAPLEEVERDLVFLRTLWQKTL 195 Query: 196 KAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSK 255 + E PA LI++ + ++ YL + + E+++D+ L +Q L + D K Sbjct: 196 RHQEQAPA--LIYRAATLVETLLLGYLNEQVTEVVVDDIDDYRLMKQ----LVQTDDKDK 249 Query: 256 IKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDI 315 +KLY + F +I +Q+ A +R + L +G +VID TEA+T ID+N+ + T Sbjct: 250 VKLYAHKGSSFQSARISAQLAKAQKRRIWLKNGAFLVIDETEAMTVIDVNTGKFTGKFAQ 309 Query: 316 EETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQ 375 ET N AA E A+Q+RLR+ G+IVIDFIDM + AV+ + A+++DR + Sbjct: 310 SETVLAVNKLAAVEAAKQIRLRNCSGIIVIDFIDMQSDSDRLAVQQTMERALKKDRVKTS 369 Query: 376 ISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 + ++ GLLEM+R++ S+ ++ C C+GTG V + + RLI EE Sbjct: 370 VRGFTKLGLLEMTRKKTRLSMAKTVTVECKACAGTGAVLAGHGHAFMLERLILEE 424 >UniRef50_C4K6Y9 RNase G (Ribonuclease G) n=2 Tax=Enterobacteriaceae RepID=C4K6Y9_HAMD5 Length = 495 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 156/472 (33%), Positives = 253/472 (53%), Gaps = 21/472 (4%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKK--ANIYKGKITRIEPSLEAAFVDYG 61 +LIN T E RVA +D L ++ IE + NIY+G++TRI P ++AAF+D Sbjct: 5 LLINVTPFET-RVAYIDDNILQEIYIERENENKTGLVGNIYQGRVTRILPGMQAAFIDIQ 63 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFIS 121 E+ FL +I P N R +I +++ GQ V+VQ+ K+ G+KGA LTT I+ Sbjct: 64 LEKAAFLHASDILSLKPPEN--EDQRQDIAELIHLGQNVMVQVIKDPLGSKGARLTTHIT 121 Query: 122 LAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQ 181 LA YLVL P IS+R+E + E + + S + G IVRTA G +AL Sbjct: 122 LASRYLVLTM-TPEV-AISQRLENEQERERLKNIVSSYCDKKNGFIVRTAAEGMDEKALA 179 Query: 182 WDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDY-LRQDIGEILIDNPKVLE-- 238 D +F W I + +++ E + R RD+ + + + ID+ + Sbjct: 180 SDAAFLKSLWANIIAGKTQNGSKNVLYTELPLKKRILRDFTVVASLDRVRIDDQQTYNSL 239 Query: 239 --LARQHIAALGRPDFSSKIKLY----TGEIPLFSHYQIESQIESAFQREVRLPSGGSIV 292 + ++I P+ K++ Y LFS Y +E++I+S ++V L SGG ++ Sbjct: 240 KAFSEEYI-----PEMLPKLEHYPVEKKNNQTLFSFYHVENEIQSLLNKKVPLKSGGCLI 294 Query: 293 IDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTP 352 I+ TEA+T IDIN+A ++EET F+TN+EA IARQLRLR+LGG+I+IDFIDM Sbjct: 295 IEQTEAMTTIDINTAGFVGYKNLEETIFDTNIEATRVIARQLRLRNLGGIIIIDFIDMKN 354 Query: 353 VRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGT 412 H++ V + L++A+ QDR + + S GL+E++R+R + ++ + C C G G Sbjct: 355 EEHKKNVLSSLKKALNQDRVKTTVGEFSPLGLIEITRKRTTENIEKILCDRCQTCEGRGW 414 Query: 413 VRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIET 464 + E++ I R + + ++Q++ V ++ +LL++K + I+ Sbjct: 415 FKSPETVCHEIFRKMIQLHHSSDSQQMLVYVSNRVSDFLLHQKAETLAKIQC 466 >UniRef50_A8UTH4 Cytoplasmic axial filament protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UTH4_9AQUI Length = 466 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 132/414 (31%), Positives = 227/414 (54%), Gaps = 18/414 (4%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 R++I+A++ L L+ + + ++ +E G ++ +I+KG++ R SL+ AFVD G Sbjct: 4 RLIISASRNLVL-TFLLKEKEISEIKVEKRGKKRLSGSIFKGRVKRFAKSLDGAFVDIGI 62 Query: 63 ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISL 122 + +LPLK + S P + EG E++VQ+ +E +KGA +T IS+ Sbjct: 63 GKEAYLPLKAYENTALEEDESC---P----LPEEGSEILVQMKREPIEDKGAKVTCRISI 115 Query: 123 AGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQW 182 G +LV +P + + +S +IE ++R + L L E G+IVRT+ + E L Sbjct: 116 PGKFLVYLPTSKKVF-VSSKIEDENRRAFFKELFERALDEE-GVIVRTSAEFATEEELLA 173 Query: 183 DLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQ 242 +L W+ IK+ + S L+++E V+ RDY D+ EI++D+ EL + Sbjct: 174 ELQKLRNTWKEIKERSASIKQG-LVYEEVPAYVQLVRDYW-NDVSEIIVDDR---ELWSE 228 Query: 243 HIAAL--GRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 +A L P+ K++ F Y ++ + F R V L +GG I+I+ TEA+T Sbjct: 229 LLAELESYFPELVGKVRYVKNISVFFKKYGLDKALTRLFARYVWLRNGGYIIIEETEAMT 288 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ID+NS G +E+ A TNLEAA+EI RQ++LRD+GG+++IDFIDM +++ + Sbjct: 289 VIDVNSGSGC-GDTLEDNALQTNLEAAEEIVRQIKLRDIGGIVIIDFIDMKNKKNREKLV 347 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVR 414 R++E + +++ + I+ GLLE++R++ +PS+ CP C G G ++ Sbjct: 348 KRVKELFADEGSKVHVYGITHLGLLELTRKKETPSVTRLLSINCPYCKGKGYIK 401 >UniRef50_C3WHH5 Ribonuclease G n=4 Tax=Fusobacterium RepID=C3WHH5_9FUSO Length = 459 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 144/428 (33%), Positives = 221/428 (51%), Gaps = 29/428 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + LI + E ++AL++ +L ++ IE ++ NIYKGKI I E FVD Sbjct: 1 MSKCLILSKNTYETKLALLEDDKLEEIYIEREKEKEISGNIYKGKIIDILNKGEIIFVDI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G E++ FL + ++ P + NI D L IVQ++ E R KGA LT Sbjct: 61 GLEKNAFLSFEN--KKNIP-------KFNIFDSL------IVQVETEARDGKGARLTLDY 105 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 S+ G LVL+PN + IS++IE E + L + L GLI+RT V KS EAL Sbjct: 106 SINGENLVLLPN-SKNLSISKKIEN---LETIKKLKDIFLNIDKGLILRTKSVEKSPEAL 161 Query: 181 QWDLSFRLKHWEAI----KKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKV 236 + K EAI +K + + L ++N I++ L +DI E +ID+ Sbjct: 162 LEEY----KKLEAINNQIQKDFKEKNTTLL--YDNNSILKKALTLLDEDIDEFIIDDEDS 215 Query: 237 LELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDST 296 + + R K K Y + +FS+Y++++QIE A R+V L SG SIVI+ T Sbjct: 216 FNKIKNTLEENKRNYLLKKFKKYFKDEDIFSYYKLDTQIERALDRKVYLESGASIVIEKT 275 Query: 297 EALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 EAL +ID+N+ + T + FNTNLEA EIARQ++LR+L G+I+IDFID+ + + Sbjct: 276 EALVSIDVNTGQNTGNQSSQNLIFNTNLEACKEIARQIKLRNLAGIIIIDFIDLKKISDR 335 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDN 416 + + L+ +++DR I S GL++ +R+R L C C GT + Sbjct: 336 KKILEELKRYLKKDRMEINSLDFSHLGLVQFTRKRQGKELSFYYREKCHYCEGTSYLLSK 395 Query: 417 ESLSLSIL 424 + + L++ Sbjct: 396 DRIILNLF 403 >UniRef50_Q9M498 Endoribonuclease E (Fragment) n=6 Tax=Magnoliophyta RepID=Q9M498_ARATH Length = 575 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 130/369 (35%), Positives = 207/369 (56%), Gaps = 22/369 (5%) Query: 94 LREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKE 153 +R+G ++IVQ+ KE G KG LT + L + VL+ R G +S++I G +RT LK Sbjct: 207 VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIG-VSKKISGVERTRLKV 265 Query: 154 ALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAES----------RPA 203 +L+ P+G GL VRT G S E LQ DL L W+ I A+S Sbjct: 266 IAKTLQ-PQGFGLTVRTVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADEGVEGAI 324 Query: 204 PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEI 263 P L+H+ + +DY + ++++D+P+ ++ + PD ++++L+ I Sbjct: 325 PALLHRAMGQTLSVVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMA-PDLCNRVELHDKGI 383 Query: 264 PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRG-GDIEETA-FN 321 PLF Y+IE +IE + V L +GGS+VI+ TEAL +ID+N G G+ +E A Sbjct: 384 PLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILE 443 Query: 322 TNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISR 381 NL AA +IAR++RLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++S +SR Sbjct: 444 VNLAAARQIAREIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSR 503 Query: 382 FGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHA 441 GL+E++R+R+ PS+ C C TG V E+L + + IE+E + Q V Sbjct: 504 HGLMEITRKRVRPSVTFMISEPCSCCHATGRV---EALETTFSK-IEQEICR---QLVSV 556 Query: 442 IVPVPIASY 450 I+ + + Sbjct: 557 IISILFCYF 565 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 41/68 (60%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 +LIN++ R+A+++G +L +L +E + ++Y G IT+ P + AFV+ G+ Sbjct: 4 ILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNIGSA 63 Query: 64 RHGFLPLK 71 RH F+ +K Sbjct: 64 RHSFMDIK 71 >UniRef50_Q8GZQ4 Endoribonuclease n=8 Tax=core eudicotyledons RepID=Q8GZQ4_ARATH Length = 996 Score = 202 bits (515), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 122/332 (36%), Positives = 191/332 (57%), Gaps = 15/332 (4%) Query: 94 LREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKE 153 +R+G ++IVQ+ KE G KG LT + L + VL+ R G +S++I G +RT LK Sbjct: 534 VRKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRIG-VSKKISGVERTRLKV 592 Query: 154 ALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPA---------- 203 +L+ P+G GL VRT G S E LQ DL L W+ I A+S Sbjct: 593 IAKTLQ-PQGFGLTVRTVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADEGVEGAI 651 Query: 204 PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEI 263 P L+H+ + +DY + ++++D+P+ ++ + PD ++++L+ I Sbjct: 652 PALLHRAMGQTLSVVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMA-PDLCNRVELHDKGI 710 Query: 264 PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRG-GDIEETA-FN 321 PLF Y+IE +IE + V L +GGS+VI+ TEAL +ID+N G G+ +E A Sbjct: 711 PLFDLYEIEEEIEGILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILE 770 Query: 322 TNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISR 381 NL AA +IAR++RLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++S +SR Sbjct: 771 VNLAAARQIAREIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSR 830 Query: 382 FGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 GL+E++R+R+ PS+ C C TG V Sbjct: 831 HGLMEITRKRVRPSVTFMISEPCSCCHATGRV 862 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 22/68 (32%), Positives = 41/68 (60%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 +LIN++ R+A+++G +L +L +E + ++Y G IT+ P + AFV+ G+ Sbjct: 331 ILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNIGSA 390 Query: 64 RHGFLPLK 71 RH F+ +K Sbjct: 391 RHSFMDIK 398 >UniRef50_A7HJB9 Ribonuclease, Rne/Rng family n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HJB9_FERNB Length = 463 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 145/414 (35%), Positives = 227/414 (54%), Gaps = 19/414 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M +L + E+ + AL++ L ++ I E NIY GKI + P+LEAAFV Sbjct: 1 MILLLKKDGENEKAQAALIENGILAEIFISDDDEESIAGNIYIGKIEKFIPALEAAFVKL 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 + + FL +K+I EY N+ + L+E Q+++VQI KE KG +TT I Sbjct: 61 PDDENAFLRIKDIKNEYL--NFFGISK------LQECQKILVQIKKEGGNTKGPQVTTNI 112 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 + G Y+V MP + ++ GISR+I +DR L+E L+ G I+RT+ V E Sbjct: 113 GIPGRYIVYMPFS-KSIGISRKITNENDRKHLREVGEKLKSKYNCGFILRTSCVESKEEY 171 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 ++ + K WE I + LIH+ES+ R++LR+++ +++ ++ K+ + Sbjct: 172 IEKEAEELHKKWEEIVNTFKRSRKTKLIHKESDSDEFVVREFLRKEVEQVITNSQKLKVI 231 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 ++ DF I + E F Y + QI+++ +R LPSGG IVID TEAL Sbjct: 232 SK---------DFKPNIPVKLIESDPFEEYNVYKQIQNSMKRIHELPSGGEIVIDKTEAL 282 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+NS T EE + N+EAA EI R +RLR++GG+I+IDFIDM ++ + Sbjct: 283 TIIDVNSGHYTSSESHEELSKKINIEAAKEICRLIRLRNIGGIIIIDFIDMKNEENRLEI 342 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 N ++ +D+ +I++ ++ GLLEM+R+R S SL E +CP C+GTG V Sbjct: 343 LNAIKSETLKDKNKIEVYGFTQLGLLEMARKRTSKSLDEKMTALCPVCNGTGHV 396 >UniRef50_A5FJP9 Ribonuclease, Rne/Rng family n=29 Tax=Bacteroidetes RepID=A5FJP9_FLAJ1 Length = 543 Score = 199 bits (506), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 137/415 (33%), Positives = 220/415 (53%), Gaps = 28/415 (6%) Query: 5 LINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAER 64 LI + E + AL+ +L +L E + +I+ KI + L AAFV+ G E+ Sbjct: 34 LIIRSSSEAVDFALLKDGKLIELHKEEEKSNFQVGDIFIAKIRKPVAGLNAAFVNVGFEK 93 Query: 65 HGFL----------------------PLKEIAREYFPANYSAHGRPNIKDVLREGQEVIV 102 FL LK+ + + F I D+L Q V+V Sbjct: 94 DAFLHYHDLGPNLASQLKFIKLVSAGKLKDFSLKTFQFEKEIDKDGIITDILSANQSVLV 153 Query: 103 QIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELP 161 Q+ KE KG ++ +SLAG ++VL+P + R IS++IE ++ LK+ + S++ P Sbjct: 154 QVVKEPISTKGPRISAELSLAGRFIVLVPFSDRVS-ISQKIEDKKEKDRLKKLVLSIK-P 211 Query: 162 EGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDY 221 +G G+IVRT GK+ L+ DL L W A+ K + P + E N RD Sbjct: 212 KGFGVIVRTVAEGKNVAELEKDLQNLLGRWSAMCKKLPTAHHPSKVLGELNRASSILRDV 271 Query: 222 LRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLY-TGEIPLFSHYQIESQIESAFQ 280 I ID+ ++ ++++ + P S +K Y + + P+F Y IE QI+++F Sbjct: 272 FNDTFSGIQIDDEELYHQTKEYLQEIA-PSKQSIVKFYQSNDTPIFEKYNIERQIKTSFG 330 Query: 281 REVRLPSGGSIVIDSTEALTAIDINSA-RATRGGDIEETAFNTNLEAADEIARQLRLRDL 339 R V + G ++I+ TEAL ID+NS R+ + + E+TA N+ AA EIARQLRLRD+ Sbjct: 331 RTVSMSKGAYLIIEHTEALHVIDVNSGNRSNKATNQEDTAMEVNMIAAAEIARQLRLRDM 390 Query: 340 GGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSP 394 GG+IV+DFIDM+ +++ + + LRE + D+A+ +I S+FGL++++RQR+ P Sbjct: 391 GGIIVVDFIDMSNPENRKVLFDFLREEMSDDKAKHKILPPSKFGLVQITRQRVRP 445 >UniRef50_Q2B6H0 Cytosolic axial filament protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B6H0_9BACI Length = 492 Score = 199 bits (505), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 138/432 (31%), Positives = 227/432 (52%), Gaps = 13/432 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK+++IN +E+ L + + L I+ P + +IY G + ++ P + AAFV+ Sbjct: 1 MKKLVINYATREKRYAVLNESGKPEKLIIDQPKNLSAVGSIYLGTVAKVLPGMNAAFVEI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRP-NIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G E+ GFL +A A +I +REG++++VQ++K+ G KG LT Sbjct: 61 GEEKSGFLHRDRLASYVRSAEDKEKKDKKSISSFVREGEKLLVQVEKDAAGTKGPRLTNV 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAE 178 I G L+ MP R +SR+IE D R EL+ L+ E GLI RT+ G S E Sbjct: 121 IEFQGEKLIYMPFG-RYVAVSRKIEKDSAREELRTLGMKLK-EEEEGLIFRTSAAGASEE 178 Query: 179 ALQWDLS-FRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 Q +L R +H E KKAA S P + ++ + A + R GE+++D+ V Sbjct: 179 DFQKELEELRAEHRELAKKAA-SVKKPAKLAEKETFLEEAAAEMARLGAGEVVVDDLAVK 237 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 + L + S ++ Y + +FS Y ++ +I+ A ++ V L +G ++ D E Sbjct: 238 Q-------KLEKAAAESVVRYYNNKESIFSAYNLDQEIDRALKKIVWLDNGAYLIFDEAE 290 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 ALT ID+N+ + + ++ +T TN AA E ARQ+RLRD+GG+I+IDFIDM R ++ Sbjct: 291 ALTVIDVNTGKYSGRENLRDTVLRTNEWAAAEAARQIRLRDIGGMILIDFIDMKEERDRQ 350 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 + + + +R+D R +I + G+L+++R++ +L ES C C GTG + E Sbjct: 351 HISRVMEKELRKDERRTRIVGFTPLGILQITRKKTRAALSESLTVKCTACEGTGRMVSAE 410 Query: 418 SLSLSILRLIEE 429 + + + R I E Sbjct: 411 TAAFRLEREIWE 422 >UniRef50_B1LBB5 Ribonuclease, Rne/Rng family n=6 Tax=Thermotogaceae RepID=B1LBB5_THESQ Length = 459 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 135/403 (33%), Positives = 212/403 (52%), Gaps = 23/403 (5%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQ 98 IY G+I +I P LEAAFV G R+ FL L EI Y ++EGQ Sbjct: 24 GKIYLGRIEKIVPGLEAAFVKIGKGRNAFLKLSEINEAYRKTVLKGQE-------VKEGQ 76 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIE-GDDRTELKEALAS 157 +++VQ+ K+ G KG +T I +A ++V+ P + G+SR+IE +R L+ S Sbjct: 77 KILVQVKKDASGKKGPQVTPQIGIADRFVVIFPFK-KVIGVSRKIEDASERRRLRTIAFS 135 Query: 158 LELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRA 217 L G+G+I+RTA G E + + L+ W + + P L+++E V + Sbjct: 136 LRKKYGVGVIMRTAAEGVDEEEIIKNFERALEKWNQVLQKFRRSRKPKLLYEEDPV-EQI 194 Query: 218 FRDYLRQDIGEILIDNPKVLELARQHIAAL-GRPDFSSKIKLYTGEIPLFSHYQIESQIE 276 ++ + I +++ ++ +LE ++++ L +P+ I+ G+ LF + + +++ Sbjct: 195 IKEKVNSKIDKLIYNDRSLLETLQKYLQNLPKKPE----IEYVEGD--LFEKFSVYERLK 248 Query: 277 SAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRL 336 R V L SGG+IVID TEALT ID+NS T + EE A TN+EA +EI RQL L Sbjct: 249 KLLSRTVPLKSGGNIVIDRTEALTVIDVNSESYTDAENQEELALKTNMEAIEEIVRQLIL 308 Query: 337 RDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSL 396 R++GG++VIDFI + + +R +E ++D RI+I + GLLE++R+R + L Sbjct: 309 RNIGGIVVIDFIKQKDPKSYEKLLSRFKEVAKRDGTRIEIFGFTNLGLLEITRKRTTRPL 368 Query: 397 GESSHHVCPRCSGTGTVRDNESL------SLSILRLIEEEALK 433 CP CSGTG V + L L L+ EE LK Sbjct: 369 DTLLFTRCPVCSGTGKVLSQKILLKRIREDLKKLKDFEEVTLK 411 >UniRef50_C3WSU7 Ribonuclease G n=6 Tax=Fusobacterium RepID=C3WSU7_9FUSO Length = 458 Score = 198 bits (504), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 139/446 (31%), Positives = 228/446 (51%), Gaps = 30/446 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK+ LI + E ++AL++ +L ++ IE ++ NIYKGK+ I + E FVD Sbjct: 1 MKKYLILSKSVYETKLALLEDNKLDEMYIERNNKKEITGNIYKGKVVDILNNGEIIFVDI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G E++ FL + N + NI D ++IVQ + E R KGA LT Sbjct: 61 GLEKNAFLSFE---------NKKDISKYNIDD------KLIVQAETEPRDEKGAKLTLDY 105 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEA--LASLELPEGMGLIVRTAGVGKSAE 178 S+ G LVL+P + IS++I+ +++E L ++ L GLI+RT GKS E Sbjct: 106 SINGENLVLLPK-SKNLSISKKIK-----DIEEVNRLKNIFLSTDNGLILRTNSEGKSEE 159 Query: 179 ALQWDLSFRLKHWEA-IKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 L + RL++ + I K E L + N I++ + +ID+ + Sbjct: 160 NLLEEYR-RLENIDNQINKDFEKINVGLL--YDVNSILKKVVALFDDSTEKFIIDDEHIF 216 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 + + + +G+ D K++ Y + +F +Y I SQIE A R+V L SG I+I+ TE Sbjct: 217 KEIKYLLEEIGKKDLIKKLRKYFKDEDIFEYYNINSQIERALDRKVYLDSGAYIIIEKTE 276 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 AL +ID+N+ + T +E F TNLEA EIARQ++LR+L G+I+IDFIDM +++ Sbjct: 277 ALISIDVNTGQNTGNKTSQEIIFQTNLEATKEIARQIKLRNLAGIIIIDFIDMKKFSNKK 336 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 + + ++ + +D+ I + GL++ +R+R L C C G G + Sbjct: 337 RILEKFKKYLSKDKVEINSVEYTNLGLIQFTRKRQGKELALYYREKCQYCEGIGYFLSKD 396 Query: 418 SLSLSILRLIEEEALKENTQEVHAIV 443 + IL L+E+ + +Q++ IV Sbjct: 397 RI---ILNLLEDLNNQIKSQDIKKIV 419 >UniRef50_C9XNN6 Ribonuclease g n=8 Tax=Clostridium RepID=C9XNN6_CLODC Length = 473 Score = 192 bits (487), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 146/461 (31%), Positives = 256/461 (55%), Gaps = 44/461 (9%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK+++I + + + A+++ +RL +L +E +++ +NIY+G + ++ P +EA FVD Sbjct: 1 MKKIVIESLIGSQ-KTAVLEDERLTELFVEDNLNKKTVSNIYRGIVKKVIPGIEACFVDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++ +L LK+ G ++ GQ+++VQI+KEE G KGA L T I Sbjct: 60 GFKKLAYLQLKK-------------GST-----IKSGQDILVQINKEEIGTKGAKLNTEI 101 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 S++G Y+V +P+N R IS +I + +R LK+ ++ E +GLI+RT G + + Sbjct: 102 SISGRYIVYIPSNDRT-TISNKITDEKERFRLKKITKAVN-KENLGLIIRTEAQGCTHDE 159 Query: 180 LQWDL-SFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDN-PKVL 237 ++ D+ +LK +E I K + P L+++ + + +D + DI I+ ++ K Sbjct: 160 IKKDIEELKLK-YENILKEYKLGIGPKLLYKSLDFATKYVKDNVNDDIESIITNSYDKYS 218 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIPL------FSHYQIESQIESAFQREVRLPSGGSI 291 EL + L D K Y ++ L F Y+IES+IE ++V L SGG + Sbjct: 219 ELK----SILRGID-----KTYVDKLCLEENRDVFDLYRIESKIEKLLNKKVWLKSGGYL 269 Query: 292 VIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMT 351 +I+ TEALT ID+N+ + G ++ET + TNLEAA EI RQL +RD+ G+I+IDFIDM Sbjct: 270 IIEKTEALTVIDVNTGKFIGTGKLDETVYKTNLEAAKEIVRQLIIRDIAGIIIIDFIDMH 329 Query: 352 PVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTG 411 +HQ+ + + L E +D+ + ++ +++ GL+E++R+R S+ + CP C G Sbjct: 330 KKKHQKEILHILEEEFNKDKRKAEVLGMTKLGLVEVARRREKESIDKYYLMSCPCCDGEQ 389 Query: 412 TVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLL 452 T++ IL IE+E ++ + V+ + V ++ Sbjct: 390 TIKSVH----YILDSIEKEIMRISEHTVYKNIMVEFNDFIF 426 >UniRef50_P51211 Ribonuclease E homolog n=2 Tax=Porphyra RepID=RNE_PORPU Length = 511 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 124/367 (33%), Positives = 199/367 (54%), Gaps = 17/367 (4%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGA-ERHGFLPLKE---IAREYFPANYSAHGRPNIKDVL 94 ++IY G + +I + AAFVD G E GF+ + + + ++Y+ NI ++L Sbjct: 35 SDIYLGTVDKIFSGINAAFVDLGKNEYSGFIHISDTGPLKKKYYI--------NNITNIL 86 Query: 95 REGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEA 154 Q+++VQI KE NKG LT I+L+G Y+VLMP +A ISR+I +D +A Sbjct: 87 TIRQKILVQIIKEPTLNKGPRLTANITLSGRYIVLMPF-SQAICISRKIYDEDERHYLKA 145 Query: 155 LASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVI 214 LA L P MGL+ R + +G E + +L+ + W I+K+A + AP L++++ +++ Sbjct: 146 LAILIKPPTMGLLFRPSAIGIDEEIILSELTNLKEQWYFIQKSAINNCAPVLLYKDEDIV 205 Query: 215 VRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKI---KLYTGEIPLFSHYQI 271 + RD+ + I+ID+ L+ +I + +FSS I +LY+ + ++I Sbjct: 206 KKVIRDFYDNNTKNIVIDSNLGLKQLNYYINT-WQCNFSSTIPSLQLYSSNKCILDTFRI 264 Query: 272 ESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIA 331 I A +V L GG + I++ EA T ID+NS ET TN AA EIA Sbjct: 265 NQAISRALIPKVDLILGGYMFIETLEAFTIIDVNSGSFNNSTSARETVLKTNCSAATEIA 324 Query: 332 RQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQR 391 QL++R++ G+I+IDFIDM R Q + + + D A+ QI +S GL+E++R+R Sbjct: 325 YQLKIRNIAGVIIIDFIDMESQRDQLQLLEHFDKELSLDDAKPQIVQLSELGLVELTRRR 384 Query: 392 LSPSLGE 398 SL E Sbjct: 385 KGKSLYE 391 >UniRef50_A5I670 Ribonuclease G n=12 Tax=Clostridium RepID=A5I670_CLOBH Length = 479 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 117/429 (27%), Positives = 227/429 (52%), Gaps = 30/429 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK + I Q+E +R+ L + + +L IE + IY G + I P++++AFVD Sbjct: 1 MKEIFI-ERQRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++ +L L + + H +++G ++V++ KE+ KG +T I Sbjct: 60 GWNKNAYLYLDKKFN-------NTH--------IKKGDYILVEVVKEDLNKKGPKVTNAI 104 Query: 121 SLAGSYLVL-MPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAE 178 ++ G Y VL + NN S +I+ + RTE++ + P+ +G+++RT + S E Sbjct: 105 TIPGRYTVLQILNNEIT--FSHKIKDEKIRTEIQNNIVK---PKDVGILIRTEAINTSIE 159 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 + ++ K + ++ + ++ + ++ Q ++ + RD L +I +I ++ + Sbjct: 160 NINNEIRRLYKIYSSLIEKSKYKMNTGVLFQNGGIVGKILRDKLNDNISKIYLNCREDYV 219 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 + + G + K+ +Y GE L +Y IE +I S ++V L GG I+ID TEA Sbjct: 220 YVSEFLKEYGENNI--KLDIYEGERNLLDYYAIEKEILSLRNKKVYLNCGGYIIIDKTEA 277 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 + +D+NS + +G +E+T F TN+EAADEI Q+ LR+L G+IVIDFIDM + Sbjct: 278 MYVVDVNSGKNVKGNSMEKTIFTTNMEAADEICNQIILRNLNGIIVIDFIDMDNENLKEK 337 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 V ++L++ +++D+ + + + L++++R+R ++ + C CSG G++ Sbjct: 338 VLDKLKQGLKRDKNKSVVYPFTELNLVQIARKRQGKTIYDYIEQPCKCCSGKGSI----- 392 Query: 419 LSLSILRLI 427 +S + ++L+ Sbjct: 393 VSFTYMKLL 401 >UniRef50_A6LQR5 Ribonuclease, Rne/Rng family n=8 Tax=Clostridium RepID=A6LQR5_CLOB8 Length = 482 Score = 189 bits (479), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 126/402 (31%), Positives = 208/402 (51%), Gaps = 26/402 (6%) Query: 14 LRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEI 73 LRVA+ L + +E +E IYKGKI I P++ + FVD G ++ G+L Sbjct: 13 LRVAIKSNNELIESIVEESKNEPIIGEIYKGKIKNIIPAINSVFVDLGLDKEGYL----- 67 Query: 74 AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 Y+ A G +++G +++V++ KE +KGA LT +S+ G Y+VL N Sbjct: 68 ---YYSDELKAKG-------IKKGDDILVEVLKEPLNDKGAKLTAKVSIPGKYIVL---N 114 Query: 134 PRAGGI--SRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHW 191 GI S+RIE D+ + E L+++E + + + VRT G L+ ++S + Sbjct: 115 CYEQGIEFSKRIE--DKEKKIELLSNIEPLKDVCITVRTEGANVDINILKNEISKLYDEF 172 Query: 192 EAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPD 251 + I K + I+ E + + ++ ++I +I +DN + I++ + Sbjct: 173 QNIDKKMKHSLGVRKIYGEDLTLTKLLMNFSGEEIIKIYVDNS----IDFDKISSFAKGQ 228 Query: 252 FSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATR 311 + KI+ Y G LF Y IE ++ +V L GG IVID TEA+ ID+NS + + Sbjct: 229 ENLKIEKYEGYRKLFDFYGIEKELLRLRHNKVNLQCGGYIVIDRTEAMYVIDVNSGKNIK 288 Query: 312 GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDR 371 +T TNLEAA EI +Q+RLR+L G+IVIDFIDM + V + L+E++R D+ Sbjct: 289 EKSFNKTILETNLEAAREIGKQIRLRNLSGIIVIDFIDMRDKSQRDIVMDALKESLRLDK 348 Query: 372 ARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 ++I ++ L++++R+R S+ E C C G G + Sbjct: 349 GNVKIFPFTQLDLVQIARKRQGKSIYEYMEEECSLCKGRGII 390 >UniRef50_D0JBK5 Ribonuclease G n=2 Tax=Blattabacterium RepID=D0JBK5_BLASB Length = 510 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 137/419 (32%), Positives = 222/419 (52%), Gaps = 30/419 (7%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K ++INA +QE + +AL++ +L +L + + +IY G + +I L AA +D G Sbjct: 3 KELIINAEEQE-VEIALLEEGQLLELHRDVFNKKFSVGDIYLGIVKKILYGLNAAIIDIG 61 Query: 62 AERHGFLPLKEIA-------------REYFPANY-SAHGRPNIKDVLREGQEVIVQIDKE 107 + FL ++ R++F N+ R +I +L GQ ++VQI KE Sbjct: 62 HSKGAFLHYNDLGFQINKILELISMNRKFFSNNFEKKENRNSIDKILHPGQRILVQISKE 121 Query: 108 ERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGL 166 NKG LT+ I + G YL+L+P + + IS++I+ + + L + ++ P G+ Sbjct: 122 PISNKGPKLTSKICIPGRYLILIPFSEKI-SISKKIKNAKEESRLLSYIRKIK-PHEFGI 179 Query: 167 IVRTAGVGKSAEALQWDLSFRLKHW-EAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQD 225 I+RTA K E L +L F +K W + +K + P P + E + RD D Sbjct: 180 IIRTASHNKREEVLNEELIFLIKKWKKTLKNLIKLPPPPVRVLSEISKTSCLLRDTFNDD 239 Query: 226 IGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRL 285 I +N + + +++ + P+ + IK Y G IP+F Y IE QI+ R V L Sbjct: 240 FKSIYCNNNFLCQEIHSYLSLIA-PEKINIIKYYKGNIPIFEKYGIEKQIQIFLGRNVPL 298 Query: 286 PSGGSIVIDSTEALTAIDINSA-------RATRGGDIEETAFNTNLEAADEIARQLRLRD 338 +G ++I+ TEAL ID+NS T I + NL AA EIARQLRLRD Sbjct: 299 ENGAYLIIEHTEALHVIDVNSGMNNHMKKNCTESERI-DNILKINLLAATEIARQLRLRD 357 Query: 339 LGGLIVIDFIDMT-PVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSL 396 +GG+IV+DFIDM+ P++ ++ E+ L+E ++ DRA+ +I ++FGL++ +R R+ P L Sbjct: 358 MGGIIVVDFIDMSEPIQRKQLYEH-LKEKMKNDRAKHKILPPNKFGLVQFTRHRVRPEL 415 >UniRef50_Q97JL8 Ribonucleases G/E family protein n=1 Tax=Clostridium acetobutylicum RepID=Q97JL8_CLOAB Length = 481 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 120/413 (29%), Positives = 215/413 (52%), Gaps = 25/413 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK++ I + L+VA++D + IE E IYKG + I P+++ AFVD Sbjct: 1 MKKIFIERCT-DFLKVAVLDNGEFKECFIEDEKEEIYSGAIYKGVVKNIVPAIKCAFVDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++G+L + S NIK +G E++V+I KE G+KG ++ I Sbjct: 60 GNGKNGYLYMD-----------SKFNNVNIK----KGDEMLVEIVKESIGSKGPKVSNAI 104 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 ++ G Y V++ N IS++I D +K +++ PE +G+++RT S E + Sbjct: 105 TIPGRYSVIITLNTDIN-ISKKIS--DSKYIKMLKENVKKPEDVGVMIRTNAQNVSLEDI 161 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGE--ILIDNPKVLE 238 ++ + + I+K A+ +++ I R RD +D+ + +++++ K + Sbjct: 162 NNEIENLYETYVGIRKKAKYSNKVGIVYNAGGTIERIMRD--NEDVADLTVVVNDKKDFD 219 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 + +I L + D +KL+ I L +Y E +I R+V L GG ++ID+TEA Sbjct: 220 NIQNYI--LTKKDMKCNLKLHDSNISLMEYYGFEREIVKLIDRKVMLKCGGYLIIDNTEA 277 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 + ID+NS + + ++ TAF TN+EAA E ARQ+ LR+L G+IVIDFID+T + Sbjct: 278 MHVIDVNSGKNIKNSNLARTAFLTNMEAAKEAARQIILRNLSGIIVIDFIDITDEEAKSK 337 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTG 411 + N L++ +D+ + + + +++++R+R S+ + C C G+G Sbjct: 338 IVNVLKQGFLKDKNKTIVYPFTELNIVQIARRRRGKSIYDYLEEKCDSCIGSG 390 >UniRef50_A5ZQK1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5ZQK1_9FIRM Length = 396 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 124/380 (32%), Positives = 202/380 (53%), Gaps = 11/380 (2%) Query: 16 VALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAR 75 A+V Q++ +L +E G + NIY G++ I +++AAFV +G+LPL + Sbjct: 11 CAIVQDQKVIELRLEPSGKKNTLNNIYVGQVENIAANIQAAFVRLSDSVNGYLPLNQCTN 70 Query: 76 EYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPR 135 + GR LR G +++VQI++E K ALT ++ +G YLVL N R Sbjct: 71 AIY-----TDGRKT-DQPLRPGDQLLVQINREAMKGKLPALTANLNFSGKYLVLTTGN-R 123 Query: 136 AGGISRRIEGDDRTELKEALAS-LELPE-GMGLIVRTAGVGKSAEALQWDLSFRLKHWEA 193 G S ++ ++ + L + L LPE G+I RT S E +L K +E Sbjct: 124 KIGFSNKLSKEESSLLNKWLEEERSLPEREYGIIARTNAAEASKEEFFHELEMLKKQYEK 183 Query: 194 IKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFS 253 + +R L+++ + A RD +D+ EI+ D P++ E +++ +PD Sbjct: 184 VAVHGRNRTCYSLLYEAEPFYLAAVRDVYTRDLDEIVTDIPEIHEKIFAYLSEF-QPDKL 242 Query: 254 SKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRG 312 +KLY ++ PL+ Y +E I+ ++ L SGG +VI TEA +ID+NS + T Sbjct: 243 EILKLYQDKLLPLYKLYSLEGAIDEVCHEKIWLKSGGFLVIQQTEAFVSIDVNSGKYTGK 302 Query: 313 GDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRA 372 EET NLEAA EIARQ+RLR+L G+I++DFI+M HQ + + L++ +R+D Sbjct: 303 KKAEETYRKINLEAAAEIARQIRLRNLSGIILVDFINMENPDHQDELFHVLQKYLRKDPV 362 Query: 373 RIQISHISRFGLLEMSRQRL 392 + + I+ +LEM+RQ++ Sbjct: 363 KCKAIDITPLHILEMTRQKV 382 >UniRef50_Q6B930 Ribonuclease E n=1 Tax=Gracilaria tenuistipitata var. liui RepID=Q6B930_GRATL Length = 497 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 122/369 (33%), Positives = 198/369 (53%), Gaps = 15/369 (4%) Query: 40 NIYKGKITRIEPSLEAAFVDYG-AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQ 98 +IY G + +I S+ AAF+ + + GF+ + +I H + I+ VL Q Sbjct: 36 DIYIGTVEKIFTSINAAFIKLNKSGKSGFIHINDIKH----LKKGKHVKS-IEKVLSINQ 90 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALAS 157 ++VQ+ KE KG LT I L G YLVLMP IS +I + ++RT L +L Sbjct: 91 IILVQVTKEPTIYKGPRLTANIHLHGKYLVLMPFCSTIC-ISHKIYDHNERTYL-YSLGV 148 Query: 158 LELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRA 217 L P MGL+++++ G + + DL K W I+KA +P L++++ ++I R Sbjct: 149 LLKPGKMGLLIKSSAQGVKEKIILKDLDDLKKQWGFIEKAIIEYSSPLLLYKDEDLIKRI 208 Query: 218 FRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIK----LYTGEIPLFSHYQIES 273 RD+ + +I+ID+ + L ++ S++IK LY + + + I+ Sbjct: 209 IRDFYEDSVTKIIIDSKEGLNQLNYYLYKWNC--ISNRIKTILQLYNHQKCILDEFYIKH 266 Query: 274 QIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQ 333 I +A + +V+LP GG I+I+S EALT ID+NS + G+ +E TN AA EIA Q Sbjct: 267 AINNALKPKVKLPYGGHIIIESNEALTVIDVNSGSFNKSGNSKEAILKTNFYAAIEIAHQ 326 Query: 334 LRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLS 393 L++R++ G+I+IDFIDM+ Q + + ++ D A+ QI +S GL+E++R+R Sbjct: 327 LKIRNINGVIIIDFIDMSSQGDQLQLLEHFSKLLKLDSAKPQIVQLSELGLVELTRRRRG 386 Query: 394 PSLGESSHH 402 SL E H Sbjct: 387 QSLQELFIH 395 >UniRef50_Q0SR50 Ribonuclease, Rne/Rng family n=8 Tax=Clostridium perfringens RepID=Q0SR50_CLOPS Length = 480 Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 135/424 (31%), Positives = 222/424 (52%), Gaps = 32/424 (7%) Query: 14 LRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEI 73 LRVA+ + L + IE E + IYKG + R+ P +++AF+D G + ++ L E Sbjct: 13 LRVAIKENNLLSECYIEEESLEPVQGEIYKGIVKRVVPGIKSAFIDIGYSKQAYMILGED 72 Query: 74 AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 ++ L++G +IV++ KE+ G+KGA +T+ ISLAG Y VL + Sbjct: 73 EKD-----------------LKQGDGIIVEVLKEQFGSKGAKVTSKISLAGRYCVLETSR 115 Query: 134 PRAGGISRRIEGDDRTELKEAL-ASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWE 192 ISR+IE E K+ L SL P +G+ VRT S +Q ++ K+++ Sbjct: 116 NDIS-ISRKIE---NLEFKKELENSLIKPSELGVTVRTKAQSASIFEIQEEIEELYKNYK 171 Query: 193 AIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDF 252 + + + P I + ++I + RD + I++D+ + E + I+ ++ Sbjct: 172 EVIREGKFSLNPKKIMGKGDLINKIIRDDIDAYTSSIIVDSIEDYERIKDSIS---NSEY 228 Query: 253 SSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRG 312 K+ LY LF +Y IE +I S V L GG IVI+ TEA+ ID+NS + T Sbjct: 229 L-KVTLYDDARSLFDYYGIEKEILSLRNNRVNLNCGGDIVIEKTEAMYVIDVNSGKNTNH 287 Query: 313 GDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRA 372 + E+TA+ TN AA EIARQ+++R+LGG+I++DFIDM +++ + L++ + D Sbjct: 288 KNKEKTAYETNKNAAIEIARQIKIRNLGGIILVDFIDMYSQENKKKILKILKDEFKSDSQ 347 Query: 373 RIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILR-LIEEEA 431 R +I + GL++++R R S+ E C C+G G + L LS + L+ E Sbjct: 348 RAKIFPFTELGLVQITRYRKGKSIYEYIEENCLACNGHG-----KRLKLSYINLLLRNEI 402 Query: 432 LKEN 435 LK+N Sbjct: 403 LKKN 406 >UniRef50_A0Q1T9 Ribonuclease G n=4 Tax=Clostridium RepID=A0Q1T9_CLONN Length = 481 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 121/396 (30%), Positives = 219/396 (55%), Gaps = 19/396 (4%) Query: 14 LRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEI 73 LR+ L + L + IE E IYKG + I P+++ AF+D G +++ ++ Sbjct: 13 LRIVLREDDILKECFIEEEKLEPSPGEIYKGVVKNIVPAIKCAFIDIGYDKNAYM----- 67 Query: 74 AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 Y H N D ++ G EV+V+I KE G KG +T+ IS+ G Y+V++ +N Sbjct: 68 --------YLNHKFKN--DDVKNGDEVLVEIMKESLGEKGPKVTSSISVPGRYVVIVTHN 117 Query: 134 PRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEA 193 + G S++IE +D + + ++ P+ +G+++RT + + E + +L +++ Sbjct: 118 KKIG-FSKKIEDNDNFK-SYIIDNINKPDDIGIMIRTNALDATIEDINKELEKLYDNYKK 175 Query: 194 IKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFS 253 I + P L++ + R D L + +++++N E ++ + + D Sbjct: 176 IVQEGTYSLKPKLLYNGGGTLGRILNDILTFNTKKVIVNNEDDAEYIKEFVE--DKSDLE 233 Query: 254 SKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGG 313 +I++Y+G+ LFSHY IE +I S ++ LPSGG+IVID TEA+ ID+NS + T+ Sbjct: 234 LEIEVYSGKQSLFSHYNIEKEILSLRNNKIVLPSGGNIVIDRTEAMYVIDVNSGKNTKQT 293 Query: 314 DIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRAR 373 I++TA TNLEAA EIARQ+ +R+L G+I+IDFID+ +++ + + L+E ++D+ + Sbjct: 294 SIDKTALVTNLEAAQEIARQIMMRNLSGIIIIDFIDIHNYEYKKKIMHILKEEFKEDKKK 353 Query: 374 IQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSG 409 I ++ L++++R+R ++ E C C G Sbjct: 354 TVIYPFTQLNLVQIARKRRGKAISEYIEEDCSMCHG 389 >UniRef50_C5RGP2 Ribonuclease, Rne/Rng family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RGP2_CLOCL Length = 475 Score = 170 bits (431), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 134/466 (28%), Positives = 226/466 (48%), Gaps = 44/466 (9%) Query: 14 LRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEI 73 LR+A+ D ++L IE E IY G + I P+++ AF+D G + F+ L Sbjct: 13 LRIAIKDHEKLLACYIEEETEEAVPGQIYLGIVKNIVPAIKGAFIDIGKAKDAFMHL--- 69 Query: 74 AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 N +D L++G +V++ +E K A +T+ I++ G+Y+V+ P Sbjct: 70 --------------DNNRD-LKKGDYFLVEVLREATELKSANVTSLITIPGTYVVVNPM- 113 Query: 134 PRAGGISRRIEGDDR-TELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWE 192 +A ISR+I E+KE L V T G+ + A D++ + + Sbjct: 114 EKALKISRKISNSKFINEVKEQLKD----------VSTYGITVRSSAENVDINIIREEVQ 163 Query: 193 AIKKAAESRPA-------PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIA 245 A+ + A P LI+ + + R RDY+ I++D+ K +L +++I Sbjct: 164 ALNIVVDKIIAKGKYSLKPQLIYDDGGALGRILRDYINDGTKRIIVDDIKNYDLVKENIE 223 Query: 246 ALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDIN 305 L S+++ ++ +F Y IE +I + ++V L SGG I+I+ TEAL +ID+N Sbjct: 224 KLHS---SAELIMHEESRGIFDCYSIEKEILALRHKKVVLKSGGYIIIEKTEALYSIDVN 280 Query: 306 SARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLRE 365 S ++T I +TAF TNLEAA+EIARQ+ LR+L G+IVIDFI+M + + V L Sbjct: 281 SGKSTGEVAISKTAFKTNLEAAEEIARQIILRNLSGIIVIDFINMKDKKEKTEVIKILEA 340 Query: 366 AVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILR 425 A ++D + I + L++++R++ +G C C G G + L L Sbjct: 341 AFKKDNNKTTIYPFTDVNLVQITRKKRGKDIGSFLEESCKHCGGEGARLKWDYLKL---- 396 Query: 426 LIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRC 471 LI+ + +K Q + + I S +E + + T +G C Sbjct: 397 LIKNQLIKLKGQHITKEFVITIDSKYKSEVQKKLTEFITFIEGHDC 442 >UniRef50_C6J9J6 Putative uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J9J6_9FIRM Length = 398 Score = 169 bits (428), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 124/380 (32%), Positives = 204/380 (53%), Gaps = 20/380 (5%) Query: 20 DGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFP 79 DG ++ +L E G + NIY G+I I ++ AAFV A +L L + + Sbjct: 21 DG-KVMELRFEPVGEKSSLGNIYVGQIENIAANIGAAFVQISAGEKCYLQLSDAPNAIY- 78 Query: 80 ANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGI 139 A+ RP L+ G E++VQI +E K A+TT ++ G YLVL + + G + Sbjct: 79 ASVKKGDRP-----LKAGDEILVQISREAMKGKLPAVTTNLNFTGKYLVLTTGDKKFG-L 132 Query: 140 SRRIEGDDRTELKEAL-ASLELPEG-MGLIVRTAGVGKSAEALQWDLSFR--LKHWEAIK 195 S ++ DDR+ + + + A + P+ G+IVRT S E + +L + L H A+ Sbjct: 133 SSKLSNDDRSRISKWMEAEVNRPDKEFGIIVRTNAADASKEEILKELEYLKGLYHKAAVD 192 Query: 196 KAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGR--PDFS 253 SR +++ + A RD +++ EI+ D P E++RQ L P+ Sbjct: 193 --GRSRTCFSCVYRTEPFYISAVRDANSRNLEEIITDIP---EISRQISDYLNSNSPEEK 247 Query: 254 SKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRG 312 K++ Y ++ PL+ Y++E+ +E +V L SGG +VI TEA +ID+NS + T Sbjct: 248 EKLRFYDDKLLPLYKLYRLETVLEEIQHEKVWLNSGGFLVIQQTEAFVSIDVNSGKFTGK 307 Query: 313 GDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRA 372 ++ET NLEAA EIARQLRLR+L G+I+IDFI+M HQ + + L++ +R+D Sbjct: 308 KKMQETYRKINLEAAKEIARQLRLRNLSGIILIDFINMENQDHQDELFHVLQKYLRKDPV 367 Query: 373 RIQISHISRFGLLEMSRQRL 392 + + I+ +LE++R+++ Sbjct: 368 KAKAVDITPLHILELTRKKV 387 >UniRef50_C5EUP6 Ribonuclease G n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EUP6_9FIRM Length = 393 Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 126/406 (31%), Positives = 203/406 (50%), Gaps = 23/406 (5%) Query: 1 MKRMLINATQ-QEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 M R+++ TQ + + A V G R+ L +E NIY GK+ ++ ++ AAFVD Sbjct: 1 MDRLIV--TQLNDRVCTAAVSGSRITQLMMEPEDSSSLLNNIYIGKVQKVVGNINAAFVD 58 Query: 60 YGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G R G+ L E F + + G+ L+ G E++VQ+ ++ K LT Sbjct: 59 IGGGRTGYYSLDENKEHLFVS--PSTGK------LKAGDEIVVQVSRDAVKTKAPVLTGK 110 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDD------RTELKEALASLELPEGMGLIVRTAGV 173 ++ G Y VL G S +I GD+ R+ L EALA E + G+IVRT G Sbjct: 111 LAFTGRYCVLTAGKTGVG-FSNKI-GDNKYKARVRSMLNEALA--EDGDRFGIIVRTNGA 166 Query: 174 GKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDN 233 G + E L + + + K A R I++ + A RD + I+ D Sbjct: 167 GATDEVLLQEYRQLKDMYLKLSKEASCRTCYSCIYRALPGYIAAIRDSYSGTLDGIVTDI 226 Query: 234 PKVLELARQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIV 292 P E + ++ D + K+ LY ++ PL Y ++S +E A + V L SGG +V Sbjct: 227 PAYYEELKDYLEKYQAED-ADKLTLYEDKLLPLSKLYSLDSALEHALNKHVWLKSGGYLV 285 Query: 293 IDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTP 352 I+ TEA+ ID+N+ + + +++T N+EAADEI RQLRLR+L G+I+IDFIDM Sbjct: 286 IEPTEAMVVIDVNTGKYSGKKKMQDTICRINMEAADEIGRQLRLRNLSGIILIDFIDMER 345 Query: 353 VRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGE 398 + + L + V +D + + ++R L+E++R+++ L E Sbjct: 346 EEDREMLMRHLGDVVSKDPVKTTVVDMTRLNLVEVTRKKVRKPLYE 391 >UniRef50_A9KMH0 Ribonuclease, Rne/Rng family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KMH0_CLOPH Length = 404 Score = 169 bits (428), Expect = 6e-40, Method: Compositional matrix adjust. Identities = 117/410 (28%), Positives = 209/410 (50%), Gaps = 15/410 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M LI + + AL +G ++ ++++ NIY GK+ I ++ AAFV+ Sbjct: 1 MSGKLIVTKMDDNIVTALYEGNQMIQVNVDREEEVSSLGNIYIGKVKNIVKNINAAFVEI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 + +LPL ++ F H + + D + G E++VQ+ KE+ K +TT I Sbjct: 61 SDRKMCYLPLADVVNPIF-----THAKSS--DKVNIGDELVVQVIKEDIKTKAPVVTTSI 113 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 + G Y+VLM + + GIS +I + + + +L S L E G ++RT V + Sbjct: 114 AFTGKYVVLM-HGTKTIGISSKIGSEQKRKRLRSLVSPFLGEQYGFVLRTNAVEAEDNLI 172 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 ++ K ++ I R L+++ + A RD +D+ I+ D+ + + Sbjct: 173 VEEIEQLKKQYDRILTYGIYRNRFSLLYKTLQPFLCAIRDGFAKDLEAIITDDLSLYDEI 232 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSH-YQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 ++++ R D K+ Y ++ S Y IE+++ A + +V LP GGS+VI TEAL Sbjct: 233 KEYLTEHQREDIG-KLTFYQDKLLALSKLYSIETKLSRALREKVWLPCGGSLVIQPTEAL 291 Query: 300 TAIDINSARA-TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 T ID+N+ +A ++ +++ET NLEAA+EIA Q+ LR+L G+I++DFIDM + Sbjct: 292 TVIDVNTGKAVSKKKNVQETFLKVNLEAAEEIAAQICLRNLSGIIIVDFIDMISEDAKTQ 351 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHH----VC 404 + E +R+D + + ++ L+E++R+++ L E H VC Sbjct: 352 LLRVFDEYLRKDPIKTTLVDMTALNLVEITRKKVRKPLHEQMKHTELMVC 401 >UniRef50_O67311 Cytoplasmic axial filament protein n=1 Tax=Aquifex aeolicus RepID=O67311_AQUAE Length = 458 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 129/437 (29%), Positives = 215/437 (49%), Gaps = 30/437 (6%) Query: 21 GQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPA 80 G L D +E + + KG + + P+L+ F+D G + L Sbjct: 23 GTELKDFKVERRKEKYRTGAFLKGLVKKECPALDGFFLDVGLTKEALL------------ 70 Query: 81 NYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGIS 140 + N K+ LR G VIVQ+ ++ER KGA +T +S+ G Y+V P + S Sbjct: 71 ----QEKKNCKN-LRIGDSVIVQLKRKERDLKGAKVTCKVSIPGKYIVYFPETKKLN-FS 124 Query: 141 RRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAE 199 ++++G TE LK+ L EL + G+I+R + + + E + +L WE++K+ A+ Sbjct: 125 KKLKGFAFTEDLKKILKE-ELNDREGVIIRASAISATKEQILKELQELRNKWESLKEKAK 183 Query: 200 SRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLY 259 L + I + DY I I +DN V I K++ Y Sbjct: 184 KVNKGILEEGQPQFI-KTILDYW-GFIKNIYVDNGDVW----GEIVEFFGDSIKHKLR-Y 236 Query: 260 TGEIPLF-SHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEET 318 I + I+ + V L +GG IVI+ TEALT+ID+NS T G +EET Sbjct: 237 VNTIDTLPGGITLNQLIDKLTSKTVWLKNGGFIVIEQTEALTSIDVNSGE-TCGKSLEET 295 Query: 319 AFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISH 378 A+N NLEA E+A+Q++ R+L G+I++D IDM + + ++ + +++ + RI+I Sbjct: 296 AYNVNLEALKEVAKQIKFRNLSGIIIVDLIDMKKEKTKESLLSEVKKIFEGEGLRIKIYG 355 Query: 379 ISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQE 438 I++ GLLEM+++ S S+ E CP C G G V+ E + ++ + +E+ K+ + Sbjct: 356 ITKLGLLEMTKKWESESIYEVIGETCPHCQGKGFVKSKEFILHTLEKALEKTRGKKIVLK 415 Query: 439 VHAIVPVPIASYLLNEK 455 VH V + + +NEK Sbjct: 416 VHPSVAKTVEEF-INEK 431 >UniRef50_D2MIS5 Ribonuclease, Rne/Rng family (Fragment) n=1 Tax=Candidatus Poribacteria sp. WGA-A3 RepID=D2MIS5_9BACT Length = 327 Score = 164 bits (415), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 102/258 (39%), Positives = 148/258 (57%), Gaps = 9/258 (3%) Query: 174 GKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDN 233 G S E L+ D+ F W+ I K + PAP +H + ++ +R RD +++ +LID+ Sbjct: 9 GVSEEDLKSDVGFLTAMWQDIVKKQDIYPAPAALHTDLDLTLRVVRDLFTKNVKRLLIDS 68 Query: 234 PK----VLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGG 289 + V E R+++ PD +S+I Y + LF H IE +I A R+V L SGG Sbjct: 69 KEECAAVKEFVRRYL-----PDQTSRIVHYDKDESLFDHLGIEMEISRALSRKVWLKSGG 123 Query: 290 SIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFID 349 IVID TEA+T +D+N+ R D EET NLEAA EIA Q++LR +GG+I+IDFID Sbjct: 124 HIVIDHTEAMTVVDVNTGRYVGKRDQEETILRNNLEAAREIAYQIKLRGIGGIIIIDFID 183 Query: 350 MTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSG 409 M R++ V L +A+ D+AR +IS IS GL+E+SR+R+ L + VC C G Sbjct: 184 MERGRNRDKVYQALVDAMGNDKARTRISRISDLGLIEISRERVREDLLRTLSDVCSDCDG 243 Query: 410 TGTVRDNESLSLSILRLI 427 G R ++ +LR I Sbjct: 244 RGYTRSALTVVYDMLRDI 261 >UniRef50_A8VZD2 Alanine racemase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VZD2_9BACI Length = 473 Score = 162 bits (410), Expect = 6e-38, Method: Compositional matrix adjust. Identities = 156/496 (31%), Positives = 248/496 (50%), Gaps = 39/496 (7%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPG-HEQKKANIYKGKITRIEPSLEAAFVD 59 MKR + T E R A+++ R+ + + SPG + I G+IT I ++AAF+D Sbjct: 1 MKRTIAVHTGLTEARGAVIEDGRVTEW-LMSPGPTRLETGMIITGQITDIHDGMDAAFID 59 Query: 60 YGAERHGFLPLKEIAR----EYFPANYS-AHGRPNIKDVLREGQEVIVQIDKEERGNKGA 114 G+++ GFL E+ R E P + G + +VLR G + KG Sbjct: 60 IGSDKRGFLHKSELNRPDKGEDVPISRQVTKGAYLLLEVLRPGTD-----------TKGP 108 Query: 115 ALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVG 174 LT IS +G Y V MP + R +S+++ + E A L E GLI+RT Sbjct: 109 KLTEKISFSGKYAVYMPFS-RYVAVSKKMSSESVRESWRAFGKERLQEDEGLIIRTNAEE 167 Query: 175 KSAEALQWDLSFRLKHWEAIKKAAESRPAP-FLIHQE-SNVIVRAFRDYLRQDIGEILID 232 + E + ++ + +K+A +P +H + S + R RD+L + E++ D Sbjct: 168 EDPEVIDREIDLLRAKADEVKRAFLDQPIKAGAVHVDPSALAARISRDFLADEDTEVICD 227 Query: 233 NPKVLE-LARQH-IAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGS 290 ++ E L R+ + LG YT E + Y+ E + + V LP+GGS Sbjct: 228 GRQLYEELVREREVMPLGAS------VSYTRE-NVARLYEFERMMMQTVRPYVWLPNGGS 280 Query: 291 IVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDM 350 ++I+ TEA+T ID+NS R T ++ +TA+ TNL+AA IAR+LRLR++ G+I+IDFIDM Sbjct: 281 LLIEETEAMTVIDVNSGRFTGKENLRKTAYQTNLQAAKVIARELRLREVSGIILIDFIDM 340 Query: 351 TPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGT 410 ++ V LR+ +QDR R+ + + GL+EM+R++ +GE C C GT Sbjct: 341 DTDDDRKDVLKTLRQGCKQDRTRVNVIGFTSLGLVEMTRKKSRMPIGEIMKEPCGCCGGT 400 Query: 411 GTVRD-NESLSLSILRLIE--EEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQD 467 G V NE L R+ E +EA++ T+ + + V + L + + +AI+ R Sbjct: 401 GRVDTANEQL----YRVSEALQEAVQGKTESLWLDLNVRLYEALTSNQEDWASAIKARI- 455 Query: 468 GVRCVIVPNDQMETPH 483 GVR V V +TP Sbjct: 456 GVR-VYVTQSASDTPF 470 >UniRef50_C9L8D6 Ribonucleases G and E n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L8D6_RUMHA Length = 400 Score = 162 bits (409), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 108/362 (29%), Positives = 199/362 (54%), Gaps = 14/362 (3%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQ 98 NIY GK+ I+ +++AAF++ +G + +A + P + + N +VL+ G Sbjct: 45 GNIYIGKVKNIQKNIQAAFIEI---ENGIMCYYSMAEKASPC--FVNVKKN--NVLKIGD 97 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASL 158 E+IVQ+ KE +K +++ ++ G YLVL + + G S +++ +++ +++E L Sbjct: 98 EMIVQVSKEGIKSKLPYVSSNLNFTGRYLVL-TSERKELGFSGKLKKEEKKQIREILKD- 155 Query: 159 ELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAF 218 ++PE +G+IVRT E + +L +K +EA+ + +SR ++ + V+ Sbjct: 156 KIPENVGIIVRTNCRDAQEEEILHELEELMKRYEAVLQKGKSRVCFSVLEKSMPEYVQIL 215 Query: 219 RDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGE--IPLFSHYQIESQIE 276 ++ QD+ EI+ D ++ E A Q++ + + KI Y + +PL+ Y ++ E Sbjct: 216 QNLYSQDLEEIVTDKQELYECAVQYLKGYKQQE---KIVRYYEDKLLPLYKLYNLQKAFE 272 Query: 277 SAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRL 336 A V L SGG +VI TEA ID+N+ + T D++ET NLEAA EIA QLRL Sbjct: 273 QAQNERVWLKSGGFLVIQQTEAFVCIDVNTGKCTSKKDMQETFRKINLEAAKEIAWQLRL 332 Query: 337 RDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSL 396 R+L G+I+IDFI++ + + L++ + QD + + ++ ++E++R+++ SL Sbjct: 333 RNLSGIILIDFINLERAEDKEELMQTLQKYLWQDSIKGTVVDMTELNIVEVTRKKVRKSL 392 Query: 397 GE 398 E Sbjct: 393 AE 394 >UniRef50_C0D9K4 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0D9K4_9CLOT Length = 400 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 113/360 (31%), Positives = 183/360 (50%), Gaps = 19/360 (5%) Query: 40 NIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQE 99 NIY GK+ ++ ++ AAFV+ G R G+LPL+ RP K+ L G E Sbjct: 39 NIYIGKVQKVVKNISAAFVEIGGGRVGYLPLEGTCPRVL-------NRPGAKN-LAPGDE 90 Query: 100 VIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDD----RTELKEAL 155 +I+Q++K+ K +T +S AG Y VL P SR + R L+EA+ Sbjct: 91 LIIQVEKDAVKTKAPVVTCRLSFAGRYCVLTAGKPGVNFSSRLTDQSFKRRVRPVLEEAV 150 Query: 156 ASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIV 215 + E GLIVRT E L +L+ +E+++ R +++ + Sbjct: 151 RA-RGHEACGLIVRTNAGEAGEEQLLAELAVLFDQYESVQNQGNHRVCYSCLYRSLPGYM 209 Query: 216 RAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSH---YQIE 272 + RD L + +L D V E + ++A + D K+ Y + PL S Y ++ Sbjct: 210 ASVRDSLGGSLEAVLTDQADVYEELKHYLALNQQKDLE-KLSFY--DDPLLSLGALYSLD 266 Query: 273 SQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIAR 332 +E A + V L SGG +VI+ TEA+ ID+N+ + + ++ET NLEAA EIA Sbjct: 267 KVMEEALGKRVWLKSGGYLVIEPTEAMVVIDVNTGKYSGKKTLQETILKINLEAAVEIAH 326 Query: 333 QLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRL 392 Q+RLR+L G+I++DFIDM P ++ + L EAV D + + +++ L+EM+R+++ Sbjct: 327 QIRLRNLSGIILVDFIDMEPGENREILLKALSEAVSADPVKTAVVDMTKLNLVEMTRKKV 386 >UniRef50_A0AIZ2 Complete genome n=21 Tax=Listeria RepID=A0AIZ2_LISW6 Length = 453 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 131/427 (30%), Positives = 217/427 (50%), Gaps = 31/427 (7%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK+++INA E+ RVA+++ L D++I P + + +I+ G I +I+ ++AAFVD Sbjct: 1 MKKLIINAAHIEK-RVAVLEDDTLIDMEIIRPSEKVQVGDIFYGFIQKIDRKMDAAFVDL 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G + GF+ LK+I E F N +G ++ VQI +E K L+ + Sbjct: 60 GNQNKGFIHLKDIP-EIFEKN--------------QGAKIPVQIVREGSATKLPLLSAVL 104 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 G L+ + IS+RI D+ LK+ + L L E +I+R+ S E L Sbjct: 105 EFPGDLLIYLHGKEYVS-ISKRIA--DKEPLKKIM-ELLLDENEAVIIRSNAENSSNEQL 160 Query: 181 QWDLS-FRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + L+ R K+ IK AA + L+ S V A + R EI+ D+ + + Sbjct: 161 EIALNQAREKYQLLIKDAATRKKPGLLLSAASGVFTSAKQFIQRYSPTEIMTDDFEFAKT 220 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 H F ++ + LF+ I+SQIE + V LP+G S+ I+ TEA+ Sbjct: 221 LEVH--------FPNREIVLKKSSDLFADIGIKSQIERLSRPVVHLPNGSSLFIEKTEAM 272 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFI-DMTPVRHQRA 358 ID+NS+R E+T + N++A EI R +RLR++ G+I++DFI M+ H+ Sbjct: 273 WVIDVNSSRFKGTAAKEKTVESVNIKAVPEIFRHIRLRNMSGMIIVDFIGGMSEAGHEEL 332 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 E R++ R++ QI+ +S+ GLL+++R++ S E + CP C GTG V ++ Sbjct: 333 YEAIERQS-REEYTTTQIAALSQSGLLQLTRRKKQQSFLEFTTIPCPVCYGTGHVASKDT 391 Query: 419 LSLSILR 425 L+ + R Sbjct: 392 LAFQLER 398 >UniRef50_A8RTZ4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RTZ4_9CLOT Length = 385 Score = 160 bits (404), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 109/396 (27%), Positives = 202/396 (51%), Gaps = 18/396 (4%) Query: 5 LINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAER 64 L+ + +++ A+V ++ L +E + NIY GK+ ++ ++ AAF+D G Sbjct: 4 LVVTRRGDKVCTAVVSDGKVSQLMLEPDTADSLLGNIYIGKVQKVVSNINAAFIDIGPGC 63 Query: 65 HGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAG 124 G+ L+E +P + L+ G E++VQ+ K+ +K +T +S G Sbjct: 64 TGYYSLQE------------RWKP---ERLKTGDELVVQVSKDAVKSKAPVVTERLSFTG 108 Query: 125 SYLVLMPNNPRAGGISRRIEGDDRTELKEAL-ASLELPEGMGLIVRTAGVGKSAEALQWD 183 Y VL G ++ + + L+E L L + +G+IVRT V A++ + Sbjct: 109 RYCVLTVGKTGIGFSAKIRDASYKARLRELLECDLAGTKDLGIIVRTNAVTVEECAVREE 168 Query: 184 LSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQH 243 L+ ++ W+ + A R +++ + A RD + EI+ D P+ + + Sbjct: 169 LAELMRTWQRLSAEAGCRVCYSCLYRALPGYIAAIRDSFGGTLEEIITDVPEYHRELKAY 228 Query: 244 IAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAI 302 + + D + ++ LY + PL Y +E+ E A + V L SGG +VI+ TEA+T I Sbjct: 229 LEMCQKED-AGRLTLYEDSLLPLGKLYSLETAFEKALGKNVWLKSGGYLVIEPTEAMTVI 287 Query: 303 DINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENR 362 D+N+ + + +++T + N+EAADEI RQ+RLR+L G+I++DFIDM ++A+ Sbjct: 288 DVNTGKYSGRKKMQDTIYKINMEAADEIGRQIRLRNLSGIIIVDFIDMEREEDRKALLAH 347 Query: 363 LREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGE 398 L E V +D + + ++ L+E++R+++ L E Sbjct: 348 LVEVVSRDPVKTTVVDMTALNLVELTRKKVRKPLHE 383 >UniRef50_C6LLP4 Cytoplasmic axial filament protein n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLP4_9FIRM Length = 408 Score = 156 bits (395), Expect = 3e-36, Method: Compositional matrix adjust. Identities = 126/408 (30%), Positives = 194/408 (47%), Gaps = 13/408 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK LI + + AL R +L + NIY GK+ + +++AAFV+ Sbjct: 1 MKNKLIITRLWDGIATALYLDGRAAELSFDRETETPLPGNIYIGKVKNVVKNIQAAFVEI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 +LPL E A YF N + R L G E++VQI +E K +T I Sbjct: 61 EDGISCYLPLSEKAEPYF-TNKTNSPR------LVAGDELLVQIAREGVKTKAPTVTANI 113 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEG-MGLIVRTAGVGKSAEA 179 S G YLVL + G IS ++ +R L++ LPEG G I+RT E Sbjct: 114 SFPGKYLVLTSGKTQTG-ISAKLAKAERERLQQIAG--RLPEGNFGWILRTNAAEAEEEE 170 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + + K +E I + A R +++ + +D + + EIL D+ + + Sbjct: 171 ILREAETLAKRFEDICRTARYRTCKSCLYRSPAAWLAHLKDIRQTECEEILTDDQGLYDR 230 Query: 240 ARQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 + ++A P + K+ Y + PL+ Y +E E A + V L SG +VI TEA Sbjct: 231 LQAYLAE-NLPADAEKLSFYEDRLLPLYKLYSLEGAFEEALRERVWLKSGAYLVIQPTEA 289 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 LTAID+N+ + RG ET NLEAA E ARQ+RLR+L G+I+IDFI+M ++ Sbjct: 290 LTAIDVNTGKCERGKKASETFRKINLEAAREAARQIRLRNLSGIILIDFINMDSKEEEQR 349 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPR 406 + L +++D + I+ GL E++R+R+ L E P+ Sbjct: 350 LLAALDAELQKDPVKAYAVDITPLGLAEVTRKRVQKPLAEKMRQSVPQ 397 >UniRef50_A6MVU3 Ribonuclease E n=1 Tax=Rhodomonas salina RepID=A6MVU3_RHDSA Length = 429 Score = 153 bits (386), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 111/381 (29%), Positives = 180/381 (47%), Gaps = 26/381 (6%) Query: 39 ANIYKGKITRIEPSLEAAFV--DYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLRE 96 +IY G + + PS+ AAF+ DY +E +GF+ + + N NI + L Sbjct: 36 GDIYIGIVETVLPSINAAFIILDY-SENNGFIHINNLGHLKKKTN-----STNITNHLSC 89 Query: 97 GQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALA 156 V+VQ+ KE G KG +T I+L G YL L+P SR E ++ L Sbjct: 90 NSIVMVQVLKEPNGQKGPTVTGDITLRGRYLTLLPFEEDIF-FSRDFESNENIVYLRLLF 148 Query: 157 SLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVR 216 +L P+ G+++ + S + D L W++I + APFLI + N I + Sbjct: 149 TLLKPKSTGILINKKAIHASINNIIQDFYSLLYEWDSICHNLNYQSAPFLISRNKNFISK 208 Query: 217 AFRDYLRQDIGEILIDNPKVLELARQHIAA-----LGRPDFSSKIKLYTGEIPLFSHYQI 271 + + + IL+D+ + + IA+ + + + + IK + Y + Sbjct: 209 VLQKVYSEKVDTILVDSKQ----GSKKIASTVTRWIKQKNNTLSIKYFENHNFFVRDYNL 264 Query: 272 ESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIA 331 + + Q + L GG I+I+ TEALT ID+NS + ET N +AA +IA Sbjct: 265 DLIVYDLLQSRINLLGGGYIIIEKTEALTTIDVNSGSFNYLNNPRETILLVNRKAAKQIA 324 Query: 332 RQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQR 391 R LRLR++ G+I++DFIDM + Q A+ ++QD R +I S GL+E++R+R Sbjct: 325 RHLRLRNISGVIIVDFIDMKNQQDQLALLLHFDSFLKQDEQRPRIIQFSELGLVELTRKR 384 Query: 392 --------LSPSLGESSHHVC 404 S S G+ S+ C Sbjct: 385 QGRSLLEMFSNSNGDLSNRSC 405 >UniRef50_C0ERY0 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ERY0_9FIRM Length = 403 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 108/361 (29%), Positives = 175/361 (48%), Gaps = 11/361 (3%) Query: 39 ANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQ 98 NIY ++ R+ + AF++ G + + L A + P S P +D L G Sbjct: 42 GNIYAARVERVAEGIHGAFLEIGDNQKCYYSLS--AEQ--PVKLS----PGHEDKLYGGD 93 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASL 158 ++VQI K+ K T ISL G Y V + R G IS++I E E L Sbjct: 94 IILVQITKDAVKTKLPVGTGNISLDGKYFVFTLTDKRTG-ISKKIRNTVERERLETLLKK 152 Query: 159 ELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAF 218 E G+IVRT G S E L +L +E + + A+ L+++E + Sbjct: 153 YTREEYGIIVRTNAAGVSEETLTKELELLQLRYEELMRKAKIATGKTLLYREPPHYITLG 212 Query: 219 RDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESA 278 ++ + + EIL D+ +V +++ D ++KI Y L++ Y+ E A Sbjct: 213 KELPAKALDEILTDHAEVFTELKEYYKQTSESD-TTKISFYEDTYSLYNLYRFAHYYEEA 271 Query: 279 FQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAF-NTNLEAADEIARQLRLR 337 + + + L SG S+VI+ TEA+T ID+N+ + E+T F N EAA EIARQLRLR Sbjct: 272 YGKYIWLKSGASLVIEHTEAMTVIDVNTGSVLKKKKQEDTLFYQINREAAKEIARQLRLR 331 Query: 338 DLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLG 397 ++ G+I+IDFI+M + + + L ++DR + ++ L+EM+R ++ L Sbjct: 332 NISGIIMIDFINMKDTAQKEKLLSLLDSECKKDRVHCNVIDMTALNLVEMTRSKVRKPLH 391 Query: 398 E 398 E Sbjct: 392 E 392 >UniRef50_UPI0001851167 ribonuclease G n=1 Tax=Bacillus coahuilensis m4-4 RepID=UPI0001851167 Length = 379 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 90/327 (27%), Positives = 176/327 (53%), Gaps = 12/327 (3%) Query: 106 KEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMG 165 K+E +KG +T I G ++V MPN S++I + R LKE A +LP G G Sbjct: 3 KDETDSKGPKVTGLIEYKGLHMVYMPNGGYVAA-SKKITDEKRQALKE-WAKTKLPAGDG 60 Query: 166 LIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQD 225 L+ RT L+ +L+ ++ + ++K AP LI +E++ + + ++ Sbjct: 61 LLFRTVAGHCDWSTLEEELNQLMQESQLVEKQLVHTSAPALI-KETDAFLNSLSSLFEKE 119 Query: 226 I---GEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQRE 282 + +D+ ++L + +QH++ + +KL+ +F+ + ++ + + +R+ Sbjct: 120 WKAEDTVWVDSEEMLTVIKQHMSQ------ACSVKLHVSAQNIFNSFNLDHSVGALMKRK 173 Query: 283 VRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGL 342 + L +GG IV D EALT+IDIN+ ++T+ +++T TN AA I Q++LR+L G+ Sbjct: 174 LWLENGGFIVFDYGEALTSIDINTGKSTKNQSLQQTVMETNRLAAVLICEQIKLRNLSGM 233 Query: 343 IVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHH 402 I+IDF++M R ++ + +++ ++D R + + +L+++R++ S SL ++ Sbjct: 234 ILIDFVNMKSSRDKQEILELVKKECKKDPVRTVVVGFTELDVLQLTRKKTSISLQDAFTK 293 Query: 403 VCPRCSGTGTVRDNESLSLSILRLIEE 429 CP C G G V E+++L + R + E Sbjct: 294 ECPTCLGYGRVYHEENIALKLERELWE 320 >UniRef50_B4U851 RNA binding S1 domain protein n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U851_HYDS0 Length = 384 Score = 147 bits (371), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 108/382 (28%), Positives = 192/382 (50%), Gaps = 26/382 (6%) Query: 18 LVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREY 77 L L D+ +++ + ++I+ GKI I +E FVD G ++ G+LP KE +EY Sbjct: 16 LFKSNELLDIKVDNLNDPEYSSSIFLGKIKSIANGVEGYFVDIGLKKDGYLPFKEADKEY 75 Query: 78 FPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAG 137 + G V+VQ+ KE KGA LTT +S G Y++ + ++ Sbjct: 76 -----------------KIGDYVVVQVKKEPSKFKGAKLTTKLSFKGKYIIYYEAD-KSV 117 Query: 138 GISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKA 197 S + + +++ + + L L E +I+RT + +L F K + I+ Sbjct: 118 KTSHLFDENFKSDYIDKVYRL-LREKESVIIRTQAKNVDISRIGQELEFYRKKAKLIRDI 176 Query: 198 AESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIK 257 S A + + V +DY+ I +I++ + KV + + D + ++ Sbjct: 177 --SHKAIMQLEPKEPCYVSMIKDYV-GGIEKIVVSDIKV---YNNIVGFILSNDLNINVE 230 Query: 258 LYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEE 317 + + L + Y++E I + V L SGG +VI+ TEA+T ID+NS + T IE Sbjct: 231 MIIDKESLENLYEVEKHINRLLSKYVWLESGGFLVIEETEAMTTIDVNSGKNTCDC-IES 289 Query: 318 TAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQIS 377 ++++TNLEAA EI RQ++LR++GG+I+IDFI M H++ V + L+ +D + + Sbjct: 290 SSYSTNLEAAKEIPRQIKLRNIGGIIMIDFIFMKDQVHRKEVLDVLKNGFSKDNVQTTVY 349 Query: 378 HISRFGLLEMSRQRLSPSLGES 399 + GL+E++R++ SL ++ Sbjct: 350 GYTALGLMEIARKKTGRSLFQT 371 >UniRef50_C7G7S7 Ribonuclease, Rne/Rng family n=2 Tax=Roseburia RepID=C7G7S7_9FIRM Length = 418 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 121/425 (28%), Positives = 211/425 (49%), Gaps = 35/425 (8%) Query: 1 MKRMLINATQQE--ELRVA-LVDG-QRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAA 56 M R +I T+ E E R+A L D Q+L ++ ES NIY G++ + +L AA Sbjct: 1 MNRFIITTTEIEKKEYRIAALCDARQKLIEVTTESMTGTSVLGNIYIGRVENVVKNLNAA 60 Query: 57 FVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL 116 FV ++ +LPL+E+ F S K + G E++VQ+ KE K ++ Sbjct: 61 FVCIAPGQNCYLPLQELKNPIFTKKQSE------KKAICAGDELLVQVVKEALKTKDPSV 114 Query: 117 TTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASL-----ELPEGMGLIVRTA 171 +T ++ G Y V++ R G S ++ + R +L + + ++P G++VRT Sbjct: 115 STNLTFTGKY-VILTTGKRKIGASSKLPKEKREKLLKIVEDFLSGKEQIP--YGVVVRTN 171 Query: 172 GVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILI 231 S E L +L+ + I A+ L+H+E + ++GE++ Sbjct: 172 AAQASKEELLLELAQLEAEVQKIISGAKYLIRYSLVHKEEQPWQKMLNGLYETELGEVVT 231 Query: 232 DNPKVLEL--------ARQHI---AALGRPD-----FSSKIKLYTGE-IPLFSHYQIESQ 274 D+ ++ E A+Q + + R D KI+ Y E + L + I SQ Sbjct: 232 DDREIFETICNMYGVGAKQLVTGGSVRSRVDEILTGHGLKIRYYEDEMVSLSALSGITSQ 291 Query: 275 IESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQL 334 + A + V L SG ++I TEALT ID+N+ + +++E N+EAA+EIARQL Sbjct: 292 LHDALRERVWLKSGAYLIIQPTEALTVIDVNTGKNIAKKEMQENFLKVNIEAAEEIARQL 351 Query: 335 RLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSP 394 RLR++ G++++DFI++ + + N A+++D QI +++ GL+E++R+++ Sbjct: 352 RLRNISGIVIVDFINLEAKSAESELLNVFGAALKKDPVPTQIVEMTKLGLVEVTRKKIKK 411 Query: 395 SLGES 399 SL ES Sbjct: 412 SLRES 416 >UniRef50_B6INE9 Ribonuclease, Rne n=1 Tax=Rhodospirillum centenum SW RepID=B6INE9_RHOCS Length = 392 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 120/383 (31%), Positives = 185/383 (48%), Gaps = 18/383 (4%) Query: 15 RVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIA 74 R AL+ L DL ++ ++ G++ R+ L+AAFV+ G G L ++ Sbjct: 15 RAALLRDGELSDLHLDRLDRPAWLGSLRLGRVVRVVAGLDAAFVEIGDRLPGLLNAADV- 73 Query: 75 REYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNP 134 P+ I +LR GQ V+VQ+ + G+KGA LT ++L G +LV + P Sbjct: 74 -RPLPSGRDRR-EARIGQLLRTGQAVLVQVKADAHGDKGAVLTMDVTLPGRFLV---HAP 128 Query: 135 RAGGI--SRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHW 191 G+ SRR+ G +R ++ L L LP G IVR L + W Sbjct: 129 LGSGLHLSRRLGRGPERARVQATLRDL-LPAEGGWIVRADAASADPGLLALEAESLWADW 187 Query: 192 EAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPD 251 +AA+ AP L+ VRA ++ I ++ + L R+ PD Sbjct: 188 RQAARAADGAGAPALLLPAPTAPVRALLEFGGAGFDAIRVEGAEALAEVRRWCRDRA-PD 246 Query: 252 FSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATR 311 ++ + + LF + I + +R V L GGS+VI+ TEALT ID+N Sbjct: 247 LEPLVRPHVARLSLFEEGDLAGAIAALAERRVPLAQGGSLVIERTEALTVIDVN------ 300 Query: 312 GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDR 371 GG+ +TNLEAA EIARQLRLR++GG++V+DF++M + + L +AV +D Sbjct: 301 GGE-RGNPLSTNLEAAREIARQLRLRNVGGIVVVDFVNMAAAADREHLLLTLTQAVSEDP 359 Query: 372 ARIQISHISRFGLLEMSRQRLSP 394 A + +S+ GL+EM+R R P Sbjct: 360 AGTHVYGLSKLGLMEMTRSRRGP 382 >UniRef50_UPI0001BC3959 ribonuclease G n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC3959 Length = 386 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 120/409 (29%), Positives = 207/409 (50%), Gaps = 40/409 (9%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK+++I +++ V DG+ IE G NIY G++ ++ P++ +AFV+ Sbjct: 1 MKKLVITGYREKNTAVLFEDGKETEIRVIEEEGSILN--NIYVGRVNKVVPNINSAFVEI 58 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 +LP+ E + R N D + +G V+VQ+ K+ K +T + Sbjct: 59 SKGIICYLPINE-------EHVIFLNRKN-TDKVCQGDIVLVQVVKDAIKTKRPMVTCKL 110 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRT-ELKEALASLELPEGMGLIVRT-----AGVG 174 +++G Y+ + +N G+S++I R ELK L E G IVRT Sbjct: 111 NISGKYVAISFDNKGIIGVSKKITDSRRIAELKTLLKEYATDE-YGFIVRTEAEHADNKD 169 Query: 175 KSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVI---VRAFRDYLRQDIGEILI 231 EAL+ + +E I + + RPA LI + N + V + + LR++ E++ Sbjct: 170 ICDEALKL-----VNEFEDIVRISSMRPAFTLIKKGGNSVDDMVSSMK--LRKE-DEVIT 221 Query: 232 DNPKVLELARQHIAALGRPDFSSKIKLYTGE-IPLFSHYQIESQIESAFQREVRLPSGGS 290 D P++ E AL +++ + LY I L + Y IE I A + V L GG Sbjct: 222 DIPEIYE-------ALSDKEYT--VSLYQDTMISLKTLYNIEKIINDALSKYVWLKRGGY 272 Query: 291 IVIDSTEALTAIDINSARAT-RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFID 349 +VI+ TEALT ID+N+ + + D E+T N+EAA+E+ RQLRLR++ G++V+DFI+ Sbjct: 273 LVIEQTEALTVIDVNTGKYDGKDKDREDTFLKINMEAAEEVERQLRLRNISGIVVVDFIN 332 Query: 350 MTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGE 398 M + + + + L +++D + + ++ GL+E++RQ++ SL E Sbjct: 333 MKD-DNIKILTDELCTQLKKDIVKCKYVDYTKLGLVEITRQKIRRSLIE 380 >UniRef50_UPI0001973AFC ribonuclease n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973AFC Length = 441 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 114/420 (27%), Positives = 194/420 (46%), Gaps = 43/420 (10%) Query: 13 ELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKE 72 ++ AL + + L++E NIY GK+ I ++ +AFVD G+ + G+ LKE Sbjct: 16 QILTALTEDGKCRSLNLEPADSRGILGNIYIGKVKNIVKNINSAFVDLGSGQIGYYSLKE 75 Query: 73 IAREYFPANYSAHGRPNIKDVL--------------------------REGQEVIVQIDK 106 R F +A N K + G E+IVQ+++ Sbjct: 76 NKRHLFTDEIAAAQAGNRKKTEGEENGTEEGWMKKSDGFPVRAKERLPKAGDEIIVQVER 135 Query: 107 EERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGL 166 + K LT+ ++ G YLVL + G + +G + LK+ L + + G+ Sbjct: 136 DAVKTKDPVLTSNLNFTGKYLVLTLGKNQIGFSGKIRDGAWKESLKKILEE-KKDDSFGI 194 Query: 167 IVRTAGVGKSAEALQWDLSFRLKHWEAIKK-------AAESRPAPFLIHQESNVIVRAFR 219 IVRT A + D+ L+ E +K+ A R L+ V + R Sbjct: 195 IVRT-------NAREADIQSILRELELLKERKSRLFATAGWRTCYSLLSSSEPSYVNSIR 247 Query: 220 DYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGE-IPLFSHYQIESQIESA 278 D +++ I+ D+ + R ++ R D K+ Y +PL Y +++ +E A Sbjct: 248 DTYAENLEAIVTDDRDCYDALRTYMEENQREDL-EKLSFYEDTMVPLAKLYSLDTAMEQA 306 Query: 279 FQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRD 338 + V L SGG +VI+ TEALT ID+N+ + ET N EAA EIARQ++LR+ Sbjct: 307 LGKHVWLKSGGYLVIEPTEALTVIDVNTGKYAGKKTQAETILRINREAAVEIARQMQLRN 366 Query: 339 LGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGE 398 L G+I++DFIDM ++ + L + +D + + +++ GL+E++R+++ L E Sbjct: 367 LSGIIIVDFIDMDADEDKKELMRLLELELLRDPVKTVLVEMTKLGLVEITRKKIRRPLAE 426 >UniRef50_C4Z9Z5 Ribonuclease G and E n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4Z9Z5_EUBR3 Length = 402 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 107/370 (28%), Positives = 184/370 (49%), Gaps = 33/370 (8%) Query: 40 NIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQE 99 NIY ++ +I P + AAFV + +L L + + + + K+ L EG E Sbjct: 43 NIYAARVNKILPGINAAFVTIAQNKSCYLSLNDAKNPVYT------NKKSKKEGLCEGDE 96 Query: 100 VIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEAL---A 156 ++VQ+ K+ K +TT +S+ GS V++ N G+S +++ + L++A+ Sbjct: 97 ILVQVIKDALKTKDPVVTTKLSIFGSN-VILTNFDTQIGVSSKLDKERAALLRKAVLLSC 155 Query: 157 SLELPEGMGLIVRTAGVGKSAEALQWD-LSFRLKHWEAIKKAAESRPAPFLIHQESNVIV 215 + EG G+IVRT +A+ D S K+ + IKKA + H S+ ++ Sbjct: 156 ADHEKEGYGIIVRTNAKNVEDKAVSQDAYSVAQKYDQIIKKAPHQALYSCVYHGMSDYLL 215 Query: 216 R------AFRDYLRQDIGEI---LIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLF 266 A ++++ D +I L+ + + A + I R D S+ I + Sbjct: 216 LMKTIDFATVEWIKTDCDDIYDSLLTEYGIYDHAPEKIM---RYDDSA--------ISMS 264 Query: 267 SHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEA 326 + Y I I++ R V L GG+I+I+ E LT ID+NSA+ G + TN+EA Sbjct: 265 TLYGIRGLIDNLTSRRVWLDCGGNIIIEQLETLTFIDVNSAKNISSG--SNSILKTNMEA 322 Query: 327 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLE 386 A EIARQLRLR++ G+I+IDFI+M + + L+ ++ D I++ GL+E Sbjct: 323 AKEIARQLRLRNISGMIIIDFINMKSEASKDTLIEELKRYIKDDNTVCTFVDITKLGLVE 382 Query: 387 MSRQRLSPSL 396 ++R+++ SL Sbjct: 383 LTRKKVHKSL 392 >UniRef50_B7ANV1 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7ANV1_9BACE Length = 418 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 103/388 (26%), Positives = 184/388 (47%), Gaps = 32/388 (8%) Query: 35 EQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVL 94 E NIY G++ + ++ AAF++Y + G+ L + F P D + Sbjct: 32 ESILGNIYVGRVENVVNNINAAFIEYARGKKGYYSLTDNEHHIFL-------NPKNNDRM 84 Query: 95 REGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGG---ISRRIEGDDRTEL 151 G V+VQ+ +E K LT I + G Y L + IS++I +DR Sbjct: 85 CIGDLVLVQVSREGVKTKEPTLTGRIGITGRYCALTLDCKSENSSVFISKKITDEDRRSY 144 Query: 152 KEALASLELPEGMG-------------------LIVRTAGVGKSAEALQWDLSFRLKHWE 192 + + + + +IVRT E + ++S + Sbjct: 145 LKGIVKDAMNNALNAYTASSVNSIPTASDMHFNIIVRTNAEDAPEEPVTAEVSRIVTTMC 204 Query: 193 AIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDF 252 I K A +R ++ + ++ ++ +I+ D P+V + R+++ P Sbjct: 205 DILKDAVTRKGLTRMYSPEESCLEDVQNMRATNLEKIITDIPEVYDSVRRYLGE-NEPGE 263 Query: 253 SSKIKLYTG-EIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATR 311 ++K++ Y ++PL Y +ESQI +A + V LPSGG +VI+ TEALT ID+NS + T Sbjct: 264 AAKLEFYDDMQLPLNKLYSVESQISTALNKRVWLPSGGYLVIEPTEALTVIDVNSGKFTG 323 Query: 312 GGDIEE-TAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 +++ T N+EAA EI RQL LR+L G+IV+DFI++ ++ + + L + ++ D Sbjct: 324 NRKLKDNTYLKINMEAAVEIGRQLMLRNLSGIIVVDFINLNTFEEKKELMSYLADILKAD 383 Query: 371 RARIQISHISRFGLLEMSRQRLSPSLGE 398 + ++R GL+E++R+++ L E Sbjct: 384 TVPTSVVDMTRLGLVEITRKKIRKPLHE 411 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P21513 Ribonuclease E n=119 Tax=Gammaproteobacteria Rep... 1342 0.0 UniRef50_C4X6M8 RNase E n=25 Tax=Gammaproteobacteria RepID=C4X6M... 1063 0.0 UniRef50_Q7MM07 Ribonuclease E n=15 Tax=Gammaproteobacteria RepI... 927 0.0 UniRef50_B0BR35 Ribonuclease E n=14 Tax=Pasteurellaceae RepID=B0... 919 0.0 UniRef50_P44443 Ribonuclease E n=98 Tax=Gammaproteobacteria RepI... 891 0.0 UniRef50_C9R616 Ribonuclease E (RNase E) n=2 Tax=Gammaproteobact... 823 0.0 UniRef50_A8FWL8 Ribonuclease, Rne/Rng family n=38 Tax=Gammaprote... 765 0.0 UniRef50_Q8K9J9 Ribonuclease E n=5 Tax=Buchnera aphidicola RepID... 755 0.0 UniRef50_Q492Q0 Ribonuclease E n=1 Tax=Candidatus Blochmannia pe... 742 0.0 UniRef50_Q0VQP0 Phosphoric diester hydrolase n=5 Tax=Gammaproteo... 718 0.0 UniRef50_C7RBE6 Ribonuclease, Rne/Rng family n=1 Tax=Kangiella k... 717 0.0 UniRef50_C5BU48 Ribonuclease E n=1 Tax=Teredinibacter turnerae T... 713 0.0 UniRef50_Q1QX63 Ribonuclease E n=5 Tax=Gammaproteobacteria RepID... 713 0.0 UniRef50_Q2SK60 Ribonucleases G and E n=3 Tax=Gammaproteobacteri... 711 0.0 UniRef50_Q2P196 Ribonuclease E n=28 Tax=Proteobacteria RepID=Q2P... 709 0.0 UniRef50_Q1YTQ8 Ribonuclease E n=1 Tax=gamma proteobacterium HTC... 707 0.0 UniRef50_A3JIF1 Ribonucleases G and E n=2 Tax=Gammaproteobacteri... 700 0.0 UniRef50_C5AD76 Ribonuclease E n=21 Tax=Proteobacteria RepID=C5A... 699 0.0 UniRef50_Q2YA54 Ribonuclease E n=7 Tax=Betaproteobacteria RepID=... 698 0.0 UniRef50_B4RR31 Rne n=31 Tax=Neisseriaceae RepID=B4RR31_NEIG2 696 0.0 UniRef50_Q0A8Q8 Ribonuclease E n=8 Tax=Gammaproteobacteria RepID... 694 0.0 UniRef50_D0L1K6 Ribonuclease, Rne/Rng family n=1 Tax=Halothiobac... 694 0.0 UniRef50_C8N8A8 Ribonuclease G and E n=19 Tax=Proteobacteria Rep... 693 0.0 UniRef50_B5EL09 Ribonuclease, Rne/Rng family n=2 Tax=Acidithioba... 689 0.0 UniRef50_A9ADG1 Ribonuclease, Rne/Rng family n=89 Tax=Betaproteo... 685 0.0 UniRef50_C8PW15 Ribonuclease E n=1 Tax=Enhydrobacter aerosaccus ... 673 0.0 UniRef50_A5WCP3 RNAse E n=3 Tax=Proteobacteria RepID=A5WCP3_PSYWF 669 0.0 UniRef50_B5JUW5 Ribonuclease E n=1 Tax=gamma proteobacterium HTC... 668 0.0 UniRef50_A4A8E4 Ribonuclease E n=5 Tax=unclassified Gammaproteob... 665 0.0 UniRef50_B0TYI3 Ribonuclease E n=18 Tax=Francisella RepID=B0TYI3... 659 0.0 UniRef50_C1DR24 Ribonuclease E n=27 Tax=Gammaproteobacteria RepI... 655 0.0 UniRef50_B3T2A0 Putative S1 RNA-binding domain protein n=2 Tax=p... 651 0.0 UniRef50_A8PMW2 Ribonuclease E (RNase E) n=1 Tax=Rickettsiella g... 647 0.0 UniRef50_B0VED2 Ribonuclease E (RNase E): endoribonuclease for r... 638 0.0 UniRef50_Q0F3G3 Ribonucleases G and E n=1 Tax=Mariprofundus ferr... 636 e-180 UniRef50_Q6FEY0 Ribonuclease E (RNase E): endoribonuclease for r... 636 e-180 UniRef50_B6BTS7 Ribonuclease E n=2 Tax=Betaproteobacteria RepID=... 632 e-179 UniRef50_C0VHW5 Ribonuclease E (RNase E): endoribonuclease for r... 629 e-178 UniRef50_Q2RSE6 RNAse E n=1 Tax=Rhodospirillum rubrum ATCC 11170... 616 e-174 UniRef50_A8ZW09 Ribonuclease, Rne/Rng family n=2 Tax=Desulfobact... 599 e-169 UniRef50_Q1PY04 Strongly similar to ribonuclease E (RNase E) n=1... 597 e-169 UniRef50_A1AW88 Ribonuclease, Rne/Rng family n=3 Tax=Gammaproteo... 590 e-167 UniRef50_A0LJB4 RNAse E n=1 Tax=Syntrophobacter fumaroxidans MPO... 590 e-167 UniRef50_Q89AH3 Putative truncated ribonuclease E n=22 Tax=Bacte... 583 e-164 UniRef50_B0SXB4 Ribonuclease, Rne/Rng family n=2 Tax=Alphaproteo... 578 e-163 UniRef50_Q2LU58 Ribonuclease E n=1 Tax=Syntrophus aciditrophicus... 576 e-162 UniRef50_D2R4N9 Ribonuclease, Rne/Rng family n=2 Tax=Planctomyce... 573 e-161 UniRef50_C8W5Q7 Ribonuclease, Rne/Rng family n=11 Tax=Bacteria R... 573 e-161 UniRef50_B3DX65 Ribonuclease G and E n=7 Tax=Verrucomicrobia Rep... 567 e-160 UniRef50_C6E0U6 Ribonuclease, Rne/Rng family n=8 Tax=Desulfuromo... 565 e-159 UniRef50_Q1NUM8 Ribonuclease E and G n=2 Tax=Deltaproteobacteria... 564 e-159 UniRef50_Q3A2X7 Ribonuclease E n=3 Tax=Bacteria RepID=Q3A2X7_PELCD 563 e-158 UniRef50_A1HNZ2 Ribonuclease, Rne/Rng family n=1 Tax=Thermosinus... 562 e-158 UniRef50_Q1K0W4 Ribonuclease, Rne/Rng family n=1 Tax=Desulfuromo... 562 e-158 UniRef50_B8FM65 Ribonuclease, Rne/Rng family n=1 Tax=Desulfatiba... 561 e-158 UniRef50_A7C082 Ribonuclease G and E n=1 Tax=Beggiatoa sp. PS Re... 559 e-157 UniRef50_A4XJ17 Ribonuclease G n=7 Tax=Clostridia RepID=A4XJ17_C... 559 e-157 UniRef50_B8DIL9 Ribonuclease, Rne/Rng family n=3 Tax=Desulfovibr... 558 e-157 UniRef50_UPI0001C430FE cytosolic axial filament protein n=1 Tax=... 556 e-156 UniRef50_Q46977 RNase E (Fragment) n=11 Tax=Enterobacteriaceae R... 556 e-156 UniRef50_A5EVP9 Ribonuclease g n=16 Tax=Gammaproteobacteria RepI... 555 e-156 UniRef50_Q0ABM4 Ribonuclease G n=2 Tax=Proteobacteria RepID=Q0AB... 554 e-156 UniRef50_C6MTB8 Ribonuclease, Rne/Rng family n=1 Tax=Geobacter s... 554 e-156 UniRef50_B8GWM7 Ribonuclease E n=6 Tax=Caulobacteraceae RepID=B8... 551 e-155 UniRef50_B0VJP4 Ribonuclease G n=1 Tax=Candidatus Cloacamonas ac... 550 e-154 UniRef50_B1H0J1 Ribonuclease G n=1 Tax=uncultured Termite group ... 547 e-154 UniRef50_C9KMZ9 Ribonuclease G n=2 Tax=Veillonellaceae RepID=C9K... 547 e-154 UniRef50_Q1MQA2 Ribonucleases G and E n=2 Tax=Desulfovibrionacea... 547 e-153 UniRef50_C4PNX0 Ribonuclease E n=17 Tax=Chlamydiales RepID=C4PNX... 547 e-153 UniRef50_C0R3W8 Ribonuclease, Rne/Rng family protein n=9 Tax=Wol... 545 e-153 UniRef50_D0LZK2 Ribonuclease, Rne/Rng family n=1 Tax=Haliangium ... 544 e-153 UniRef50_A0LIP4 RNAse G n=22 Tax=Bacteria RepID=A0LIP4_SYNFM 539 e-151 UniRef50_C1A932 Ribonuclease G n=1 Tax=Gemmatimonas aurantiaca T... 538 e-151 UniRef50_C6ADR1 Ribonuclease E n=5 Tax=Rhizobiales RepID=C6ADR1_... 536 e-150 UniRef50_A8L1W0 Ribonuclease, Rne/Rng family n=25 Tax=Actinobact... 535 e-150 UniRef50_A6GBN9 Ribonuclease G n=1 Tax=Plesiocystis pacifica SIR... 535 e-150 UniRef50_A8MHL2 Ribonuclease, Rne/Rng family n=2 Tax=Alkaliphilu... 535 e-150 UniRef50_D2NSV3 Ribonuclease G and E n=2 Tax=Rothia mucilaginosa... 532 e-149 UniRef50_D1B5Z1 Ribonuclease, Rne/Rng family n=3 Tax=Synergistac... 531 e-149 UniRef50_Q2IVP9 RNAse E n=3 Tax=Bradyrhizobiaceae RepID=Q2IVP9_R... 528 e-148 UniRef50_Q0AWI9 RNAse G n=1 Tax=Syntrophomonas wolfei subsp. wol... 528 e-148 UniRef50_B2KEH9 Ribonuclease, Rne/Rng family n=1 Tax=Elusimicrob... 528 e-148 UniRef50_B6INB6 Ribonuclease, Rne n=1 Tax=Rhodospirillum centenu... 528 e-148 UniRef50_D2SCS1 Ribonuclease, Rne/Rng family n=39 Tax=Bacteria R... 527 e-147 UniRef50_D1N7U6 Ribonuclease, Rne/Rng family n=2 Tax=Lentisphaer... 527 e-147 UniRef50_Q3J4J9 RNAse E n=6 Tax=Rhodobacteraceae RepID=Q3J4J9_RHOS4 526 e-147 UniRef50_B5JNK0 Ribonuclease, Rne/Rng family n=1 Tax=Verrucomicr... 525 e-147 UniRef50_B6JHD4 Ribonuclease E (RNase E) n=19 Tax=Alphaproteobac... 524 e-147 UniRef50_Q92QJ4 Probable ribonuclease E n=1 Tax=Sinorhizobium me... 524 e-147 UniRef50_D2LHL1 Ribonuclease, Rne/Rng family n=1 Tax=Rhodomicrob... 524 e-147 UniRef50_B9JDP7 Ribonuclease E protein n=3 Tax=Alphaproteobacter... 523 e-146 UniRef50_D2PUT1 Ribonuclease, Rne/Rng family n=1 Tax=Kribbella f... 523 e-146 UniRef50_B9JVK9 Ribonuclease E n=40 Tax=Rhizobiales RepID=B9JVK9... 523 e-146 UniRef50_C4RPB5 Ribonuclease Rne/Rng n=1 Tax=Micromonospora sp. ... 521 e-146 UniRef50_C7MPQ3 Ribonuclease, Rne/Rng family n=2 Tax=Actinomycet... 521 e-146 UniRef50_B8IYX2 Ribonuclease, Rne/Rng family n=10 Tax=Desulfovib... 519 e-145 UniRef50_B5ZYQ5 Ribonuclease, Rne/Rng family n=7 Tax=Alphaproteo... 519 e-145 UniRef50_UPI0001C31D95 ribonuclease, Rne/Rng family n=1 Tax=Cone... 519 e-145 UniRef50_C6QC83 Ribonuclease, Rne/Rng family n=1 Tax=Hyphomicrob... 519 e-145 UniRef50_B0UJB2 Ribonuclease, Rne/Rng family n=4 Tax=Methylobact... 519 e-145 UniRef50_Q7CZH1 Ribonuclease E n=7 Tax=Alphaproteobacteria RepID... 518 e-145 UniRef50_Q0BVH1 Ribonuclease E n=2 Tax=Acetobacteraceae RepID=Q0... 518 e-145 UniRef50_D2RM73 Ribonuclease, Rne/Rng family n=1 Tax=Acidaminoco... 518 e-145 UniRef50_UPI00003842F2 COG1530: Ribonucleases G and E n=1 Tax=Ma... 518 e-145 UniRef50_C9RQU1 Ribonuclease, Rne/Rng family n=1 Tax=Fibrobacter... 518 e-145 UniRef50_Q6AIU3 Probable RNAse E n=1 Tax=Desulfotalea psychrophi... 517 e-145 UniRef50_B2GGD5 Putative ribonuclease n=1 Tax=Kocuria rhizophila... 517 e-145 UniRef50_P0A9J2 Ribonuclease G n=523 Tax=cellular organisms RepI... 517 e-144 UniRef50_C6JJB6 Ribonuclease G and E n=2 Tax=Fusobacterium RepID... 516 e-144 UniRef50_A0JXK2 Ribonuclease, Rne/Rng family n=4 Tax=Actinomycet... 516 e-144 UniRef50_A8IFL2 Ribonuclease E and G n=6 Tax=Rhizobiales RepID=A... 515 e-144 UniRef50_B8HA23 Ribonuclease, Rne/Rng family n=1 Tax=Arthrobacte... 515 e-144 UniRef50_B8CXZ3 Ribonuclease, Rne/Rng family n=1 Tax=Halothermot... 515 e-144 UniRef50_D1SD19 Ribonuclease, Rne/Rng family n=1 Tax=Micromonosp... 515 e-144 UniRef50_C0WDS2 Ribonuclease n=1 Tax=Acidaminococcus sp. D21 Rep... 514 e-144 UniRef50_A3VT88 Ribonuclease E n=1 Tax=Parvularcula bermudensis ... 513 e-143 UniRef50_C8XF15 Ribonuclease, Rne/Rng family n=1 Tax=Nakamurella... 513 e-143 UniRef50_B5ZDP7 Ribonuclease, Rne/Rng family n=12 Tax=Alphaprote... 512 e-143 UniRef50_D1BNE2 Ribonuclease, Rne/Rng family n=3 Tax=Veillonella... 512 e-143 UniRef50_C7Q8B4 Ribonuclease, Rne/Rng family n=1 Tax=Catenulispo... 511 e-143 UniRef50_A4AGL0 Ribonuclease G n=3 Tax=Actinobacteria (class) Re... 510 e-142 UniRef50_A8M0Z2 Ribonuclease, Rne/Rng family n=2 Tax=Salinispora... 510 e-142 UniRef50_D1AAW2 Ribonuclease, Rne/Rng family n=1 Tax=Thermomonos... 509 e-142 UniRef50_C0XRI1 Ribonuclease E (Fragment) n=2 Tax=Corynebacteriu... 509 e-142 UniRef50_C6D805 Ribonuclease, Rne/Rng family n=3 Tax=Bacillales ... 509 e-142 UniRef50_A6LDG7 Ribonuclease G n=21 Tax=Bacteria RepID=A6LDG7_PARD8 509 e-142 UniRef50_Q0FAK9 Ribonuclease, Rne/Rng family protein n=1 Tax=Rho... 508 e-142 UniRef50_C2KPN3 Ribonuclease G n=3 Tax=Actinomycetaceae RepID=C2... 508 e-142 UniRef50_B8EPB2 Ribonuclease, Rne/Rng family n=1 Tax=Methylocell... 507 e-142 UniRef50_B6YQX9 Ribonuclease G n=23 Tax=Bacteroidales RepID=B6YQ... 507 e-141 UniRef50_Q0G6Z6 Ribonuclease E and G n=2 Tax=Rhizobiales RepID=Q... 507 e-141 UniRef50_B2HMG4 Ribonuclease E Rne n=28 Tax=Mycobacterium RepID=... 506 e-141 UniRef50_D0LAJ7 Ribonuclease, Rne/Rng family n=1 Tax=Gordonia br... 506 e-141 UniRef50_Q9K8J2 Ribonuclease G (Cytosolic axial filament protein... 505 e-141 UniRef50_B0TWF6 Ribonuclease G n=17 Tax=Francisella RepID=B0TWF6... 503 e-140 UniRef50_Q2G5W8 Ribonuclease E n=8 Tax=cellular organisms RepID=... 503 e-140 UniRef50_D1Y9V9 S1 RNA binding domain protein n=3 Tax=Propioniba... 503 e-140 UniRef50_C0VZF1 Ribonuclease E n=1 Tax=Actinomyces coleocanis DS... 502 e-140 UniRef50_B4RCR6 Ribonuclease, Rne/Rng family protein n=4 Tax=Alp... 501 e-140 UniRef50_UPI0001BC2E10 putative ribonuclease n=1 Tax=Brevibacter... 501 e-140 UniRef50_C7NH23 RNAse G n=1 Tax=Kytococcus sedentarius DSM 20547... 501 e-140 UniRef50_D1BV45 Ribonuclease, Rne/Rng family n=2 Tax=Actinomycet... 500 e-140 UniRef50_A0R152 Ribonuclease, Rne/Rng family protein n=9 Tax=Cor... 500 e-139 UniRef50_C8WCX7 Ribonuclease, Rne/Rng family n=3 Tax=Zymomonas m... 500 e-139 UniRef50_A3ZLB1 Ribonuclease E n=4 Tax=Planctomycetaceae RepID=A... 499 e-139 UniRef50_C3W9J7 Ribonuclease G and E n=1 Tax=Fusobacterium morti... 498 e-139 UniRef50_D1BDM1 Ribonuclease, Rne/Rng family n=1 Tax=Sanguibacte... 498 e-139 UniRef50_A3EQR7 Ribonucleases G and E n=3 Tax=Leptospirillum Rep... 496 e-138 UniRef50_C5VAX0 Ribonuclease E n=5 Tax=Corynebacterium RepID=C5V... 496 e-138 UniRef50_Q11NU1 Ribonuclease G n=10 Tax=Bacteroidetes RepID=Q11N... 496 e-138 UniRef50_B0K422 Ribonuclease, Rne/Rng family n=12 Tax=Thermoanae... 496 e-138 UniRef50_A4F9K3 Ribonuclease, Rne/Rng family n=1 Tax=Saccharopol... 494 e-138 UniRef50_D1I512 Whole genome shotgun sequence of line PN40024, s... 494 e-138 UniRef50_C2BMV7 Ribonuclease E n=3 Tax=Corynebacterium RepID=C2B... 492 e-137 UniRef50_A8LRP5 Ribonuclease n=35 Tax=Rhodobacterales RepID=A8LR... 492 e-137 UniRef50_D0WNB8 Putative S1 RNA binding domain protein n=1 Tax=A... 490 e-136 UniRef50_Q0C4E1 Ribonuclease, Rne/Rng family n=2 Tax=Hyphomonada... 488 e-136 UniRef50_C7QYR2 Ribonuclease, Rne/Rng family n=1 Tax=Jonesia den... 486 e-135 UniRef50_A6WDN2 Ribonuclease, Rne/Rng family n=1 Tax=Kineococcus... 486 e-135 UniRef50_C5CAZ2 Ribonuclease, Rne/Rng family n=1 Tax=Micrococcus... 485 e-135 UniRef50_Q83MU7 Ribonuclease G n=2 Tax=Tropheryma whipplei RepID... 485 e-135 UniRef50_C7LYB0 Ribonuclease, Rne/Rng family n=1 Tax=Acidimicrob... 484 e-135 UniRef50_Q5WES2 Ribonuclease G n=1 Tax=Bacillus clausii KSM-K16 ... 482 e-134 UniRef50_D2LS23 Ribonuclease, Rne/Rng family n=1 Tax=Bacillus ce... 481 e-134 UniRef50_C8NQN5 Ribonuclease E n=5 Tax=Corynebacterium RepID=C8N... 480 e-133 UniRef50_C3PI06 Ribonuclease E n=3 Tax=Corynebacterium RepID=C3P... 480 e-133 UniRef50_C5CEM0 Ribonuclease, Rne/Rng family n=1 Tax=Kosmotoga o... 478 e-133 UniRef50_B8DVT8 Ribonuclease G n=7 Tax=Bifidobacterium RepID=B8D... 477 e-132 UniRef50_Q8DL99 Ribonuclease E n=3 Tax=Chroococcales RepID=Q8DL9... 476 e-132 UniRef50_B1I4P9 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus ... 476 e-132 UniRef50_B1VGM2 Ribonuclease E n=1 Tax=Corynebacterium urealytic... 476 e-132 UniRef50_C4LJU7 Ribonuclease E n=1 Tax=Corynebacterium kroppenst... 475 e-132 UniRef50_A8GXM7 Ribonuclease E n=15 Tax=cellular organisms RepID... 475 e-132 UniRef50_C4K6Y9 RNase G (Ribonuclease G) n=2 Tax=Enterobacteriac... 474 e-132 UniRef50_C9LKU5 Cytoplasmic axial filament protein n=1 Tax=Diali... 474 e-132 UniRef50_D2RC82 S1 RNA binding domain protein n=8 Tax=Bifidobact... 473 e-131 UniRef50_A6CTK6 Cytosolic axial filament protein n=1 Tax=Bacillu... 473 e-131 UniRef50_Q2GKZ9 Ribonuclease, Rne/Rng family n=10 Tax=Anaplasmat... 472 e-131 UniRef50_P72656 Ribonuclease E homolog n=10 Tax=Cyanobacteria Re... 471 e-131 UniRef50_Q31PW1 Ribonuclease, Rne/Rng family n=19 Tax=Cyanobacte... 470 e-130 UniRef50_C1PAJ8 Ribonuclease, Rne/Rng family n=1 Tax=Bacillus co... 468 e-130 UniRef50_A6LNV2 Ribonuclease, Rne/Rng family n=2 Tax=Thermosipho... 466 e-129 UniRef50_A7HQG8 Ribonuclease, Rne/Rng family n=1 Tax=Parvibaculu... 466 e-129 UniRef50_A0L8J1 Ribonuclease E n=1 Tax=Magnetococcus sp. MC-1 Re... 466 e-129 UniRef50_Q2S597 Ribonuclease, Rne/Rng family subfamily n=1 Tax=S... 465 e-129 UniRef50_Q2GES6 Ribonuclease, Rne/Rng family n=2 Tax=Neoricketts... 464 e-128 UniRef50_C0ZAL2 Putative ribonuclease G n=1 Tax=Brevibacillus br... 463 e-128 UniRef50_A5FJP9 Ribonuclease, Rne/Rng family n=29 Tax=Bacteroide... 463 e-128 UniRef50_Q1D0P4 Ribonuclease, Rne/Rng family n=7 Tax=Proteobacte... 461 e-128 UniRef50_C1F7B7 Ribonuclease, Rne/Rng family, insertion n=2 Tax=... 458 e-127 UniRef50_Q2JW46 Ribonuclease, Rne/Rng family n=4 Tax=Synechococc... 458 e-127 UniRef50_B2V9I2 Ribonuclease, Rne/Rng family n=4 Tax=Hydrogenoth... 456 e-126 UniRef50_Q4JWU2 Ribonuclease E n=2 Tax=Corynebacterium jeikeium ... 456 e-126 UniRef50_A8UTH4 Cytoplasmic axial filament protein n=1 Tax=Hydro... 455 e-126 UniRef50_A8F3K6 Ribonuclease, Rne/Rng family n=1 Tax=Thermotoga ... 455 e-126 UniRef50_B3QZC2 Ribonuclease, Rne/Rng family n=12 Tax=Chlorobiac... 453 e-125 UniRef50_C9M9G5 Ribonuclease G n=1 Tax=Jonquetella anthropi E3_3... 452 e-125 UniRef50_A5CEM7 Ribonuclease E n=2 Tax=Orientia tsutsugamushi Re... 452 e-125 UniRef50_A9VIS0 Ribonuclease, Rne/Rng family n=78 Tax=Bacillus R... 451 e-125 UniRef50_Q7U4C5 Ribonuclease E n=16 Tax=cellular organisms RepID... 451 e-125 UniRef50_C5EUP6 Ribonuclease G n=1 Tax=Clostridiales bacterium 1... 450 e-124 UniRef50_D0JBK5 Ribonuclease G n=2 Tax=Blattabacterium RepID=D0J... 449 e-124 UniRef50_A5I670 Ribonuclease G n=12 Tax=Clostridium RepID=A5I670... 449 e-124 UniRef50_Q1V2D3 Ribonuclease E/G n=5 Tax=Bacteria RepID=Q1V2D3_P... 449 e-124 UniRef50_A5WCI8 RNAse G n=4 Tax=Moraxellaceae RepID=A5WCI8_PSYWF 446 e-123 UniRef50_C3WSU7 Ribonuclease G n=6 Tax=Fusobacterium RepID=C3WSU... 446 e-123 UniRef50_A9ESZ7 Ribonuclease G n=1 Tax=Sorangium cellulosum 'So ... 444 e-123 UniRef50_A8RTZ4 Putative uncharacterized protein n=1 Tax=Clostri... 444 e-122 UniRef50_Q1IRN1 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus ... 443 e-122 UniRef50_A9BIJ0 RNA binding S1 domain protein n=1 Tax=Petrotoga ... 442 e-122 UniRef50_C9XNN6 Ribonuclease g n=8 Tax=Clostridium RepID=C9XNN6_... 441 e-122 UniRef50_A2BYM7 S1 RNA binding domain:Ribonuclease E and G n=8 T... 439 e-121 UniRef50_B1LBB5 Ribonuclease, Rne/Rng family n=6 Tax=Thermotogac... 439 e-121 UniRef50_A5ZQK1 Putative uncharacterized protein n=2 Tax=Clostri... 438 e-121 UniRef50_Q97JL8 Ribonucleases G/E family protein n=1 Tax=Clostri... 438 e-121 UniRef50_Q01YX3 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus ... 436 e-120 UniRef50_Q3AF57 Ribonuclease, Rne/Rng family n=1 Tax=Carboxydoth... 435 e-120 UniRef50_Q2B6H0 Cytosolic axial filament protein n=1 Tax=Bacillu... 434 e-120 UniRef50_A9KMH0 Ribonuclease, Rne/Rng family n=1 Tax=Clostridium... 432 e-119 UniRef50_A7H8A5 Ribonuclease, Rne/Rng family n=1 Tax=Anaeromyxob... 431 e-119 UniRef50_P51211 Ribonuclease E homolog n=2 Tax=Porphyra RepID=RN... 430 e-118 UniRef50_C5RGP2 Ribonuclease, Rne/Rng family n=1 Tax=Clostridium... 429 e-118 UniRef50_C0D9K4 Putative uncharacterized protein n=2 Tax=Clostri... 425 e-117 UniRef50_C6J9J6 Putative uncharacterized protein n=1 Tax=Ruminoc... 423 e-116 UniRef50_Q0SR50 Ribonuclease, Rne/Rng family n=8 Tax=Clostridium... 423 e-116 UniRef50_A6LQR5 Ribonuclease, Rne/Rng family n=8 Tax=Clostridium... 420 e-115 UniRef50_C3WHH5 Ribonuclease G n=4 Tax=Fusobacterium RepID=C3WHH... 418 e-115 UniRef50_Q8GZQ4 Endoribonuclease n=8 Tax=core eudicotyledons Rep... 414 e-114 UniRef50_Q6B930 Ribonuclease E n=1 Tax=Gracilaria tenuistipitata... 414 e-113 UniRef50_Q9M498 Endoribonuclease E (Fragment) n=6 Tax=Magnolioph... 409 e-112 UniRef50_C6LLP4 Cytoplasmic axial filament protein n=1 Tax=Bryan... 408 e-112 UniRef50_A7HJB9 Ribonuclease, Rne/Rng family n=1 Tax=Fervidobact... 404 e-111 UniRef50_C0ERY0 Putative uncharacterized protein n=1 Tax=Eubacte... 404 e-111 UniRef50_A9RK39 Predicted protein n=1 Tax=Physcomitrella patens ... 404 e-110 UniRef50_A0Q1T9 Ribonuclease G n=4 Tax=Clostridium RepID=A0Q1T9_... 400 e-109 UniRef50_A8VZD2 Alanine racemase n=1 Tax=Bacillus selenitireduce... 398 e-109 UniRef50_UPI0001973AFC ribonuclease n=1 Tax=Clostridium sp. M62/... 396 e-108 UniRef50_C9L8D6 Ribonucleases G and E n=1 Tax=Blautia hansenii D... 395 e-108 UniRef50_A7VBE5 Putative uncharacterized protein n=3 Tax=cellula... 393 e-107 UniRef50_O67311 Cytoplasmic axial filament protein n=1 Tax=Aquif... 391 e-107 UniRef50_B7ANV1 Putative uncharacterized protein n=1 Tax=Bactero... 386 e-105 UniRef50_C7G7S7 Ribonuclease, Rne/Rng family n=2 Tax=Roseburia R... 386 e-105 UniRef50_D0MD03 Ribonuclease, Rne/Rng family n=1 Tax=Rhodothermu... 384 e-104 UniRef50_A7B8M6 Putative uncharacterized protein n=4 Tax=Clostri... 381 e-104 UniRef50_UPI0001BC3959 ribonuclease G n=1 Tax=Butyrivibrio cross... 379 e-103 UniRef50_A6MVU3 Ribonuclease E n=1 Tax=Rhodomonas salina RepID=A... 368 e-100 UniRef50_A0AIZ2 Complete genome n=21 Tax=Listeria RepID=A0AIZ2_L... 367 1e-99 UniRef50_C4Z0A7 Ribonuclease G n=1 Tax=Eubacterium eligens ATCC ... 366 4e-99 UniRef50_C4Z9Z5 Ribonuclease G and E n=1 Tax=Eubacterium rectale... 363 2e-98 Sequences not found previously or not previously below threshold: UniRef50_A6VXP7 Ribonuclease, Rne/Rng family n=3 Tax=Gammaproteo... 679 0.0 >UniRef50_P21513 Ribonuclease E n=119 Tax=Gammaproteobacteria RepID=RNE_ECOLI Length = 1061 Score = 1342 bits (3473), Expect = 0.0, Method: Composition-based stats. Identities = 1061/1061 (100%), Positives = 1061/1061 (100%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY Sbjct: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI Sbjct: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA Sbjct: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT Sbjct: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE Sbjct: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS Sbjct: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME Sbjct: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA Sbjct: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA Sbjct: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA Sbjct: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 Query: 661 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR 720 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR Sbjct: 661 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR 720 Query: 721 KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ 780 KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ Sbjct: 721 KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ 780 Query: 781 QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG 840 QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG Sbjct: 781 QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG 840 Query: 841 KVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPV 900 KVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPV Sbjct: 841 KVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPV 900 Query: 901 QVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEV 960 QVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEV Sbjct: 901 QVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEV 960 Query: 961 VETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVP 1020 VETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVP Sbjct: 961 VETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVP 1020 Query: 1021 EAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE 1061 EAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE Sbjct: 1021 EAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE 1061 >UniRef50_C4X6M8 RNase E n=25 Tax=Gammaproteobacteria RepID=C4X6M8_KLEPN Length = 1077 Score = 1063 bits (2749), Expect = 0.0, Method: Composition-based stats. Identities = 813/1103 (73%), Positives = 870/1103 (78%), Gaps = 68/1103 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY Sbjct: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEIAREYFPANY+AHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI Sbjct: 61 GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELP+GMGLIVRTAGVGKSAEAL Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDLSFRLKHWEAI+KAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA Sbjct: 181 QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT Sbjct: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE Sbjct: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS Sbjct: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSILRLIEEEALKENT+EVHAIVPVPIASYLLNEKR+AV+AIE+RQ VR +IVPND+M+ Sbjct: 421 LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPNDEMQ 480 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPHY VLRVRKGEET TLSY+LPKLHEE MALP ++E AERKRPEQPALA F MPD PPA Sbjct: 481 TPHYSVLRVRKGEETSTLSYLLPKLHEEEMALPGDDEPAERKRPEQPALAAFVMPDAPPA 540 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTE-QPAPKAE 599 P EPAA VA AAP AAPAQPGLLSRFF ALK +FSG EE KP E Q KAE Sbjct: 541 PMLEEPAAAPVA---AAAPVAAAAPAQPGLLSRFFSALKNIFSGAEEAKPAEVQVEKKAE 597 Query: 600 AKPERQQDRRKPRQ---------------NNRRDRNERRDTRSERTEGSDNREENRRNRR 644 KPERQQ+RRKPR + RD + RDTR++ EG + RE NRR Sbjct: 598 EKPERQQERRKPRANNRRDRNDRRDNRDNRDNRDNRDNRDTRADNAEGREPRESREENRR 657 Query: 645 QAQQQTAETRESRQ----QAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVE 700 +++ ++ E+R + EKA++ DEQQ PRRER+RRR+DDKRQAQQEAKA E Sbjct: 658 NRREKPSQNVEARDVRQTSGDDAEKAKSRDEQQ-PRRERTRRRSDDKRQAQQEAKAQTRE 716 Query: 701 EQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPA 760 E VQETEQEERV+ + PRRK RQL QKVR E +V E VA +V E V AE I A Sbjct: 717 EPVVQETEQEERVQTL-PRRKPRQLAQKVRVESAVVEP--VAEIVPEAVVAEVI-----A 768 Query: 761 PRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERY 820 P +E VK LP ++ +Q E N ++R+ GMPRRSRRSPRHLRVSGQRRRRYRDERY Sbjct: 769 PHSEPVKAELPAGVESVADQDE--NGESREANGMPRRSRRSPRHLRVSGQRRRRYRDERY 826 Query: 821 PTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQE------------EVHVQ 868 PTQSPMPLTVACASPE+ASGKVWIRYP+VRPQD Q EE + Q+ V V Sbjct: 827 PTQSPMPLTVACASPEMASGKVWIRYPVVRPQDQQPEEVQVQDASVAKTVEAVAAPVAVV 886 Query: 869 PMVTEVPVA---AAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQ 925 VT PV A +EPV + PVV E E V + V VTE Sbjct: 887 ETVTAAPVTVEPATMEPVTAEPVVVEPVAAAEPL--VVDAAEVVAPAAVEPAPQEPVTEA 944 Query: 926 PQVITESDVAVAQEVAEQAEPVV---EPQEET----ADIEEVVETAEVVVAEPEVVAQPA 978 P V E+ A+A V AEPVV E E T A +E + AE V P A PA Sbjct: 945 PAV--EAPQAIAP-VTLDAEPVVVEPEAVETTPVVAAPVETIAPVAETVEQAPVTEAAPA 1001 Query: 979 APVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGK 1038 PV AE +P V H HATAPMTRAPAP+YVPEAPRHS W RP FAFEGK Sbjct: 1002 EPVKAEP-------PVSKPVVVAGHRHATAPMTRAPAPDYVPEAPRHSTWVRPPFAFEGK 1054 Query: 1039 GAAGGHTATHHASAAPARPQPVE 1061 GAAGGH+ATH A+A P RPQPVE Sbjct: 1055 GAAGGHSATHKATAEPTRPQPVE 1077 >UniRef50_Q7MM07 Ribonuclease E n=15 Tax=Gammaproteobacteria RepID=Q7MM07_VIBVY Length = 1036 Score = 927 bits (2395), Expect = 0.0, Method: Composition-based stats. Identities = 580/1103 (52%), Positives = 704/1103 (63%), Gaps = 110/1103 (9%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ+EELRVALVDGQRLYDLDIESPGHE KKANIYKG+ITR+EPSLEAAFVDY Sbjct: 1 MKRMLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEIA+EYFP YS GRP+IK+VL EGQEVIVQI+KEERG+KGAALTTFI Sbjct: 61 GAERHGFLPLKEIAKEYFPDGYSYQGRPSIKEVLTEGQEVIVQIEKEERGSKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAGSYLVLMPNNPRAGGISRRIEGD+RTELK AL++LELP+GMGLIVRTAGVGKSAE L Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSTLELPQGMGLIVRTAGVGKSAEEL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 +WDL+ LKHW AIK A+ES PAPFLIHQESNVIVRA RDYLR+DIGEILID+ + E A Sbjct: 181 EWDLNVLLKHWAAIKDASESNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++HI L RPDF +++K Y GE+PLFSHYQIESQIESAFQREVRLPSGGSIVID TEALT Sbjct: 241 KEHIQ-LVRPDFVNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALT 299 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSARAT+GGDIEETA NTNLEAADEIARQLRLRDLGGL+VIDFIDMTPVRHQR VE Sbjct: 300 SIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVE 359 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NRLREAVR DRAR+QI ISRFGLLEMSRQRLSPSL E+SHH+CPRCSGTG VRDNESL+ Sbjct: 360 NRLREAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLA 419 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LS+LRLIEEEALK+NT +V A+VPVPIASYLLNEKR +VN IE R V+ +VPN ME Sbjct: 420 LSVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNHIE-RIQEVKITVVPNSDME 478 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHE---EAMALPSEEEFAERKRPEQPALATFAMPDV 537 TPH+ V+RVR+GEE LSY+LPK E EA S E + K+ E+P L FA P Sbjct: 479 TPHFEVIRVREGEEVDLLSYLLPKKLEAMKEAEGKESPETEYKPKKIEEPVLKGFASPAQ 538 Query: 538 P-PAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAP 596 PAP P A V P+A +PGL R AL + G E K + Sbjct: 539 SVPAPAPKAVVAKVANEKPQA-------EEKPGLFGRLIKALGSFLFGSAEEKVEAEKTE 591 Query: 597 KAEAKPERQ------------------QDRRKPRQNNRRDRNERRDTRSERTEGSDNREE 638 + + + + ++ + R RR RN + + E R + Sbjct: 592 RKDEREKGNRRQKRDRNDRRRNNRDNNRENNRDRDGKRRQRNRDENVVETQDEAIKPRSQ 651 Query: 639 NRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALN 698 +R ++ AQ + ES+ A+V EK Q A+A Sbjct: 652 QKRKQKPAQNKADNAVESKANAKVAEKG-----------------------LQLAAEAQG 688 Query: 699 VEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEA 758 +Q Q+T + V+ RR++R+LN+ VR + + + V AE ++ Sbjct: 689 ASKQEGQKTPS--KAEKVKERRQRRKLNKPVRVKDQLEQAEETLMDAAPVVEAETFNKQN 746 Query: 759 PAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDE 818 P +E + VVA T + DN +N PRR+RRSPRHLR SGQ R Sbjct: 747 -TPASEKAE---KVVADTV------DAMDNSENEEKPRRNRRSPRHLRASGQ-----RRR 791 Query: 819 RYPTQSPMPLTV---ACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVP 875 R + P P + ASPE+A GKV RY P+ V +E+ +EEV VT V Sbjct: 792 RGRDRRPNPFRLRKGGVASPEMAMGKVMPRYI---PKPVAKKEEMVKEEV-----VTAVT 843 Query: 876 VAAAIEPVVSAPVVEEVAGVVEAPVQVA----EPQPEVVETTHPEVIAAA----VTEQPQ 927 A++ V+ P + ++ + A E +P+ ++ + + AA VTE+P Sbjct: 844 AVPAMQGGVACPEMAMGKVIIRRDITSAQTPTETKPKRSKSRNNKPAKAAVVEVVTEEPT 903 Query: 928 ----VITESDVAVAQEVAEQAEPVVEPQEE-----TADIEEVVETAEVVVAEPEVVAQPA 978 V+ Q++ Q E V +P E+ T + E+VET E VVAE E + Sbjct: 904 VENAVVAPIQETEVQKIEPQVESVSQPVEQVSVETTEVVAEIVETTE-VVAEVESATETV 962 Query: 979 APVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSD-WQRPTFAFEG 1037 A TVA VE + V A+APMT+AP P+ + E + ++ +A G Sbjct: 963 ANETEA------TVAVVESSIKVIKAQASAPMTKAPGPQELIEIQVVAAPFKAERYAQRG 1016 Query: 1038 KGAAGGHTATHHASAAPARPQPV 1060 AG AT ASAA +P+ V Sbjct: 1017 ---AGSQVATSQASAAMTKPEMV 1036 >UniRef50_B0BR35 Ribonuclease E n=14 Tax=Pasteurellaceae RepID=B0BR35_ACTPJ Length = 995 Score = 919 bits (2375), Expect = 0.0, Method: Composition-based stats. Identities = 545/1080 (50%), Positives = 676/1080 (62%), Gaps = 119/1080 (11%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ+EELRVALVDGQRL+DLDIESPGHEQKK+NIYKGKITR+EPSLEAAFVDY Sbjct: 1 MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEI+REYFPA+Y +GRPNIKD+++EGQEVIVQ+ KEERGNKGAALTTFI Sbjct: 61 GAERHGFLPLKEISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAGSYLVLMPNNPRAGGISRRIEGD+R ELKEAL L++PE +GLIVRTAGVGKS E L Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEEL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDL L HWEAIKKAAESRPAPFLIHQES+VIVRA RDYLR+DIGEILIDN K+ E A Sbjct: 181 QWDLKVLLHHWEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + HI L RPDF ++++LY GE+PLFSHYQIESQIESAFQREVRLPSGGSIVID TEALT Sbjct: 241 KNHIR-LVRPDFINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALT 299 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AIDINS+R+TRGGDIEETA NTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR VE Sbjct: 300 AIDINSSRSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE 359 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NR+REA RQDRARIQ S ISRFGLLEMSRQRLSPSL E+S HVCPRC GTG VRDNES++ Sbjct: 360 NRIREATRQDRARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIA 419 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSILRL+EEEA+KENT +VH IVPV IASYLLNEKR A+++IE R D V+ V+VP + ME Sbjct: 420 LSILRLLEEEAIKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHD-VQVVVVPTESME 478 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPH+ V R+R+ E PTLSY L K + + EE+ + V Sbjct: 479 TPHFSVYRLRENEVLPTLSYDLAKHYHDR-----EEDTQLNTHTVSEEVLVTRNEPVITV 533 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 + + + + PAP TP PA+P LLSR +K+ F+ E K E+P PKA Sbjct: 534 ESVLQSSELNLQPAP-----TPVEPAKPSLLSRLIAKVKSFFAP--EEKAEEKPKPKARN 586 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 + +R+ R +P + +R++R + + + E R+E + R +A++ + E Sbjct: 587 QHDRRNRRERPNRVDRQERKQTQ----AQDEQKAQRQERNQERNEAKKARRQVVEEVAGV 642 Query: 661 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR 720 + T+ + +++ A R RR D +++ + E +V EE+V+ + Sbjct: 643 QETQTEQRSNKDNATTERRQRR--DLRKKVRVENVEASVATTEPSTQPIEEKVQNI---- 696 Query: 721 KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ 780 A + P+V + +T PE Sbjct: 697 ------------------AQIQPLVAQ---------------------------ETQPET 711 Query: 781 QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG 840 E D R+NG R RR PRHLRV QRRR + + + MPL A ASPE+ASG Sbjct: 712 VNEERQDVRENG----RQRRLPRHLRVGNQRRRDNNNRKENVVAAMPLAAAVASPEMASG 767 Query: 841 KVWIRY--PIV----------RPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPV 888 K+W+++ P+ + + + V+E EQ+ V EP+V + + Sbjct: 768 KIWVKFSEPVSTNKPNSKAEEKARFLSVDEMLEQQTTEVN------------EPIVESNI 815 Query: 889 VEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVA----VAQEVAEQA 944 A V V + Q + +++ + ES+ A V + +A+ Sbjct: 816 ENNSASSVAPVVGFIKQQSD------RDLVKENKARLHHQVEESEQADEQLVEKAMAKHV 869 Query: 945 EPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHN 1004 P+ + +D + V E E V Q AP + AE +V + N Sbjct: 870 APLGGFVSQHSDRDLVKEKNERVQKFQAQATQ--APAIGNATAEAISVPVSNYQSDYSFN 927 Query: 1005 ----------HATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAP 1054 H A MT A APE E ++W + + F GKG G +A H +AP Sbjct: 928 GRLGTFSRVMHTKAEMTVASAPEKALETVTVNEWTQSKYYFYGKGFGGHSSAVSHVHSAP 987 >UniRef50_P44443 Ribonuclease E n=98 Tax=Gammaproteobacteria RepID=RNE_HAEIN Length = 935 Score = 891 bits (2302), Expect = 0.0, Method: Composition-based stats. Identities = 546/1063 (51%), Positives = 653/1063 (61%), Gaps = 135/1063 (12%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ+EELRVALVDGQRL+DLDIESPGHEQKKANIYKGKITR+EPSLEAAFVDY Sbjct: 1 MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEIAREYFP +Y GRPNI+D+L EGQEVIVQ++KEERGNKGAALTTF+ Sbjct: 61 GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDILVEGQEVIVQVNKEERGNKGAALTTFV 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAGSYLVLMPNNPRAGGISRRIEGD+RTELKEAL+SL++P+G+GLIVRTAGVGKS E L Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSSLDVPDGVGLIVRTAGVGKSPEEL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDL L HWEAIK+A++SRPAPFLIHQES+VIVRA RDYLR+DIGEILID+PK+ E A Sbjct: 181 QWDLKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++HI L RPDF +++KLY GE+PLFSHYQIESQIESAFQREVRLPSGGSIVID TEALT Sbjct: 241 KEHIK-LVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALT 299 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AIDINSAR+TRGGDIEETA NTNLEAADEIARQLRLRDLGGL+VIDFIDMTP+RHQR VE Sbjct: 300 AIDINSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVE 359 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NR+R+AVR DRARIQIS ISRFGLLEMSRQRLSPSLGESSHH+CPRC GTG VRDNESLS Sbjct: 360 NRIRDAVRPDRARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLS 419 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSILRL+EEEALKENT++VH IVPV IASYLLNEKR A++ IE R + V ++ PN+ ME Sbjct: 420 LSILRLLEEEALKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHN-VDIIVAPNEAME 478 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPH+ V R+R GEE LSY L K+H A +EE R + PA Sbjct: 479 TPHFSVFRLRDGEEVNELSYNLAKIH-CAQDENTEESLLSRNVETTAVIEQ-------PA 530 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 A A + AP +P LL++ +K LF+ E E Sbjct: 531 VESAVVALSISEAAPTPVERKS---NEPSLLAKIIAKIKGLFATKSE-----------EN 576 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 KP+ + R P Q+ ++ R S ++ Sbjct: 577 KPKNNRTSRNP---------------------------------NRNQRRSQDRRSSRRP 603 Query: 661 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR 720 E+Q +R + ++ V V E + EER PV RR Sbjct: 604 RSENNETERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEAK-EERTEPVTQRR 662 Query: 721 KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ 780 ++R L ++VR E + ETV P +++ V + Sbjct: 663 QRRDLRKRVRVEDN------------ETVVENNFSTTEKMPEVDVITV----------QN 700 Query: 781 QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG 840 +E R RR+PRHLR + +RRR E +SPMPL A SPELASG Sbjct: 701 NDEKPVHQNQRSERQERQRRTPRHLRAANNQRRRRDQE---PKSPMPLFAAVVSPELASG 757 Query: 841 KVWIRYPIVR-PQ---DVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVV 896 K WI Y V P+ + V+E EQE+ I P + V E+ V Sbjct: 758 KAWIDYSTVNLPKENHFLSVDELLEQEKTK----------KGFITPAMGIVVEEKSPDVK 807 Query: 897 EAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETAD 956 A + +P E V+ E + + +P QEV E +P + Sbjct: 808 PALDFITQPANESVQKKVQESLDRLSSYKP-----------QEVVESIDPAIN------- 849 Query: 957 IEEVVETAEVVVAEPEVVAQPAAPV-VAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPA 1015 V EPE + + + V E + T+++V H A MT A A Sbjct: 850 -----------VDEPETLEKVSKFVRTYEFNGRLGTISSVP--------HTKAEMTLAKA 890 Query: 1016 PEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQ 1058 + +PE WQ + F GKGAAG H A H + P R + Sbjct: 891 NDEMPEDFPIRAWQDSRYYFYGKGAAGHHCAISHVYSEPTRTK 933 >UniRef50_C9R616 Ribonuclease E (RNase E) n=2 Tax=Gammaproteobacteria RepID=C9R616_AGGAD Length = 960 Score = 823 bits (2125), Expect = 0.0, Method: Composition-based stats. Identities = 542/1063 (50%), Positives = 639/1063 (60%), Gaps = 108/1063 (10%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 MLINATQ+EELRVALVDGQRL+DLDIES GHEQKKANIYKGKITR+EPSLEAAFVDYGAE Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYGAE 60 Query: 64 RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLA 123 RHGFLPLKEIAREYFP+ Y GRPNI+D++ EGQEVIVQ++KEERGNKGAALTTF+SLA Sbjct: 61 RHGFLPLKEIAREYFPSGYVYQGRPNIRDIISEGQEVIVQVNKEERGNKGAALTTFVSLA 120 Query: 124 GSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWD 183 GSYLV+MPNNPRAGGISRRIEGD+R ELK+AL+SL++PEG+GLIVRTAGVGKS E LQWD Sbjct: 121 GSYLVIMPNNPRAGGISRRIEGDERLELKDALSSLDVPEGVGLIVRTAGVGKSPEELQWD 180 Query: 184 LSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQH 243 L L HWEAIK+A++SRPAPFLIHQES+VIVRA RDYLR+DIGEILID+ +V E A+ H Sbjct: 181 LKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAH 240 Query: 244 IAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAID 303 I L RPDF +++KLY GE+PLFSHYQIESQIESAFQREVRLPSGGSIVID TEALTAID Sbjct: 241 IK-LVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAID 299 Query: 304 INSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL 363 INSAR+TRGGDIEETA NTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR VENR+ Sbjct: 300 INSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRV 359 Query: 364 REAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSI 423 R+AVRQDRARIQIS ISRFGLLEMSRQRLSPSLGESSHHVCPRC GTG +RDNESLSLSI Sbjct: 360 RDAVRQDRARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSI 419 Query: 424 LRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPH 483 LRL+EEEALKENT++VH IVPV IASYLLNEKR A+++IE R V ++VPN+ METPH Sbjct: 420 LRLLEEEALKENTKQVHTIVPVQIASYLLNEKRKAIHSIEKRHT-VDILVVPNEAMETPH 478 Query: 484 YHVLRVRKGEETPTLSYMLPKLHE-EAMALPSEEEFAERKRPEQPALATFAMPDVPPAPT 542 + V RVR GEE LSY L +LH+ + +EE R D PA T Sbjct: 479 FSVFRVRDGEEVNELSYNLARLHQGQDEIFVAEESLISRN------------IDTTPAET 526 Query: 543 PAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKP 602 P +A V P AP Q G E K EQ Sbjct: 527 PVVESAAVSLSIPMPAPEPVERKEQSGPSLLSRLLAALKGLFASEPKQEEQNKKTRNNNR 586 Query: 603 ERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEV 662 + + R + RRN R+ + AE Q AE Sbjct: 587 NSNNN-------------------------RNRRNQERRNSRRNRNDNAENVVEEQTAEK 621 Query: 663 TEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQ 722 E+ + + R++ RN + + + + + E S EERV P RR++ Sbjct: 622 AERVESRN--------RNQERNAKRNRKPEVIEEVINSEAST--PVSEERVEPT-QRRQR 670 Query: 723 RQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQE 782 R L +KVR + E V P + + Q A E VV Sbjct: 671 RDLRKKVRLNEEEMNE--VPP------SKSTVAQFAENTVVEPKAEEEIVVTDVIDLDDN 722 Query: 783 ENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKV 842 RDN R RR PRHLRV+ QRRRR E+ SPMPL A ASPELASGKV Sbjct: 723 AEADKGRDNS----RQRRLPRHLRVNNQRRRRNTQEK----SPMPLFAAVASPELASGKV 774 Query: 843 WIRYPIV----RPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEA 898 WI + V+E EQ+ E + + P + V + V Sbjct: 775 WIDMGQSVQSKENSFLSVDELLEQQN-QSDAGEPEQSITVTM-PALDMIVEKSKNDVQPL 832 Query: 899 PVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIE 958 + +P + V+ + V P E TA++ Sbjct: 833 TEFIIQPANDSVKKKVQASLQRLNNNV---------------------VSAPMEATAEVI 871 Query: 959 EVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEY 1018 ++ ++ V E + T +AV H A T A + Sbjct: 872 VTMDVSDNVKFMDETDR------TYVFNGRLGTFSAV--------THTKAEATLAKPSDT 917 Query: 1019 VPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE 1061 +WQ + F GKGAAG HTA H P + + V+ Sbjct: 918 PITTYPVQEWQESRYYFYGKGAAGHHTAISHIYTEPTKAEAVK 960 >UniRef50_A8FWL8 Ribonuclease, Rne/Rng family n=38 Tax=Gammaproteobacteria RepID=A8FWL8_SHESH Length = 1201 Score = 765 bits (1974), Expect = 0.0, Method: Composition-based stats. Identities = 501/1065 (47%), Positives = 627/1065 (58%), Gaps = 84/1065 (7%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EELRVALVDGQ+LYDLDIESPGHEQKKANIYKGKITR+EPSLEAAFVDY Sbjct: 1 MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GA+RHGFLPLKEIAREYFP YS GRPNIK+V++EGQEVIVQIDKEERGNKGAALTTFI Sbjct: 61 GADRHGFLPLKEIAREYFPKGYSFQGRPNIKEVVKEGQEVIVQIDKEERGNKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAGSYLVLMPNNPRAGGISRRIEGD+RTELK A++ LE+P+GMGLIVRTAGVGK + L Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDERTELKAAMSELEVPQGMGLIVRTAGVGKDSAEL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 +WDL HW AIK+A+E RPAPFLIHQESNVIVRA RDYLR+D+GE+LID+P++ E A Sbjct: 181 KWDLKVLEHHWTAIKEASEGRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEDA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 +QH+A L RPDF +IK Y E+PLF+H+QIE+QIESAFQREVRLPSGGSIVID TEALT Sbjct: 241 KQHVA-LVRPDFVDRIKQYDAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALT 299 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSARAT+GGDIEETA NTNLEAADE+ARQLRLRDLGGL+VIDFIDMTPVRHQR VE Sbjct: 300 SIDINSARATKGGDIEETALNTNLEAADEVARQLRLRDLGGLVVIDFIDMTPVRHQREVE 359 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NR+R+AV DRAR+Q+ ISRFGL+EMSRQRL PSL ES+ H+CPRC G GT+R ESL+ Sbjct: 360 NRMRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLA 419 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSILRL+EEEA+KENT ++ A VPV +A++LLNEKR A+ E R D V ++P+ M Sbjct: 420 LSILRLMEEEAIKENTSQIEATVPVDVAAFLLNEKRKAIRITEQRHD-VEVYVIPDPNMT 478 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TP Y V+R RK ++ SY L E + P + ER P QPAL F+ P V Sbjct: 479 TPDYRVVRHRKDDQISESSYKLLDQPEAKLYEPRK---LERAAPPQPALKGFSAP-VKEV 534 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSG------------GEET 588 P+ V + K A+PGL+S+ F A+ ALF Sbjct: 535 EKPSSIKKDVKTESKK--------DAEPGLISKLFSAISALFKPEEKKEEPKKKPQSNRD 586 Query: 589 KPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNR-RQAQ 647 R+ K + +++ RN R +S + SD E+ R + QA+ Sbjct: 587 SQNRNNRRNTRRNDNRRNRDDKDQASDKGARNSR--NKSADSAKSDKVEKQVRGKDEQAK 644 Query: 648 QQTAETRESRQQAEVTEKARTADEQQAPRRE-------------RSRRRNDDKRQAQQEA 694 +Q+ +SR+ A+ ++ A+ ++ P++E + R N+ Q Sbjct: 645 RQSRNDSKSRRPAQESD----AESKEQPKQEVARERRQRRNMRRKVRVENEQA----QVE 696 Query: 695 KALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVE-------- 746 + + E V+ EE+ +P+R+ R+ N K + +Q +EA A VE Sbjct: 697 ETQVLAETPVKAAVSEEKT--TRPKRQPRKSN-KPKPQQEATQEAQAATQVEAEVSDISL 753 Query: 747 -ETVAAE--------PIVQEAPAPRTELVKVPLPVVAQTAPEQQEE------NNADNRDN 791 ETV E + Q AP + P+ Q EE ++ + R+ Sbjct: 754 TETVKTETLEAKVEAKVEQTAPVAVDSIQTTPVTDADQVEISSSEEVEVEATDDKEQREP 813 Query: 792 GGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRP 851 RRSRRSPRHLR +GQRRRR D + S A+P S + + Sbjct: 814 REGQRRSRRSPRHLRAAGQRRRRDEDTEGESSSD-------AAPAFVSNETEVENQANET 866 Query: 852 QDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVE 911 + V + + E A E A E A V + P V Sbjct: 867 KAASVAVSTPAQP-ETPEIPAEDTQKADTEVKSEATKPESTKPEATASVAASAPAKPAVP 925 Query: 912 TTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEP 971 + + + A AE + P + ++ + Sbjct: 926 AKKQAPAKPKTAVKSEAMAAPAKPAAPVKAEASVASAAPAKPATPVKAETQVKTEASVAA 985 Query: 972 EVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAP 1016 A+PA V AE + E A +A AP Sbjct: 986 AAPAKPAVQVKAEAPVKTEASVATAAPAKPVAPAKVEASVKAEAP 1030 >UniRef50_Q8K9J9 Ribonuclease E n=5 Tax=Buchnera aphidicola RepID=RNE_BUCAP Length = 968 Score = 755 bits (1950), Expect = 0.0, Method: Composition-based stats. Identities = 413/648 (63%), Positives = 491/648 (75%), Gaps = 1/648 (0%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQQEELRVALVDGQRLYDLDIES EQKK+NIYKGKITRIEPSLEA F+DY Sbjct: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESSRSEQKKSNIYKGKITRIEPSLEAVFIDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G E+HGFLPLKEI++ YFP NY+ R NIKD+LREGQE+IVQI+KEERG KGAALTTFI Sbjct: 61 GMEKHGFLPLKEISKNYFPENYNCDVRLNIKDILREGQELIVQINKEERGTKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LAGSYLVLMPNNP+ GISRR+EG DR ELKE L+SL++PE MGLI+RTAGVGKS ++L Sbjct: 121 TLAGSYLVLMPNNPKIAGISRRVEGSDRIELKELLSSLKIPEKMGLIIRTAGVGKSIKSL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDLS RLKHW AIKKA++ + APFLI+QESNVIVRAFRDYLRQDIGEILIDNPK+L++A Sbjct: 181 QWDLSLRLKHWNAIKKASKKKSAPFLIYQESNVIVRAFRDYLRQDIGEILIDNPKILDIA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 R+HI ALGRPDF +KIKLYTGEIPLFS+YQIESQI+SAFQR+VRLPSGGSI++D+TEALT Sbjct: 241 REHITALGRPDFINKIKLYTGEIPLFSYYQIESQIDSAFQRKVRLPSGGSIMVDTTEALT 300 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AIDINS+R+TRG DIE TAFNTNLEA +EI+RQLRLRDLGGLIVIDFIDMT + HQ+ +E Sbjct: 301 AIDINSSRSTRGADIETTAFNTNLEAVEEISRQLRLRDLGGLIVIDFIDMTTISHQKIIE 360 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N+LRE VR+DRARIQI HIS+FGLLEMSRQRLS SLGESSHH+CPRC+GTGT+RDNESLS Sbjct: 361 NKLREIVREDRARIQIGHISKFGLLEMSRQRLSSSLGESSHHICPRCTGTGTIRDNESLS 420 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSILRLIEEEALKENT EVHAIVP+ IA YLLNEKR AV AIE RQ G + +IVPN M+ Sbjct: 421 LSILRLIEEEALKENTYEVHAIVPIEIACYLLNEKREAVYAIEKRQAGGKTIIVPNKNMK 480 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPHY V R+RKGE+ ++SY L + + + ++E ++K L ++ D Sbjct: 481 TPHYLVSRIRKGEQIRSMSYCLSNVRKNKIFNNIKKEIVDKKHKLNSTLTNISLSDDSFD 540 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 E + + L +F +K F E Sbjct: 541 KQKEEKEKFLRKKNYNNSIINALF-NNKNLFFKFIVWIKNSFLKKHIFVKNESFKRNIFQ 599 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQ 648 + +K N+ + +++ + S + N+ + Q Sbjct: 600 NKKNILFAKKEEFNSIEEIHKKDNQVSSIDNNKKKQLLNKVKKNNNHQ 647 >UniRef50_Q492Q0 Ribonuclease E n=1 Tax=Candidatus Blochmannia pennsylvanicus str. BPEN RepID=Q492Q0_BLOPB Length = 866 Score = 742 bits (1916), Expect = 0.0, Method: Composition-based stats. Identities = 399/542 (73%), Positives = 458/542 (84%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQQEELRVALVDGQRLYDLDIE+ GHEQKK+NIYKGKI RIEPSLEA FVDY Sbjct: 1 MKRMLINATQQEELRVALVDGQRLYDLDIETVGHEQKKSNIYKGKIIRIEPSLEAVFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ERHGFLP+KEI+ EYF ++ S++ + NIK++L EGQE+IVQIDKEERGNKGAALTTFI Sbjct: 61 GVERHGFLPIKEISHEYFLSSPSSYNKFNIKEILCEGQELIVQIDKEERGNKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAGSYLVLMPNNP++ GISRRIEG+DR LKE L++LELPEGM LI+RTAG+GKS EAL Sbjct: 121 SLAGSYLVLMPNNPKSSGISRRIEGNDRIGLKEILSTLELPEGMSLIIRTAGLGKSIEAL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 +WDL+ RL+HW+ IK A APFLIHQ+SNVIVRAFRDYLR DIGEILIDNPK++ LA Sbjct: 181 EWDLTSRLQHWKTIKNTAAKHLAPFLIHQDSNVIVRAFRDYLRPDIGEILIDNPKIMHLA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++HI +LGRPDF+ KIK Y G+IPLFSHYQIESQIESAFQREVRLPSGGSIVID+TEALT Sbjct: 241 KEHITSLGRPDFTKKIKFYNGDIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT 300 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AIDINSAR+T+G DIE+TAF+TNLEA DEIARQLRLRD+GGLIVIDFIDMTP+RHQR +E Sbjct: 301 AIDINSARSTKGTDIEDTAFHTNLEATDEIARQLRLRDVGGLIVIDFIDMTPIRHQREIE 360 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N L+ AV QDRARIQI HIS+FGLLE+SRQRLS SLGESSHH+CPRCSGTG++RDNESLS Sbjct: 361 NSLKIAVHQDRARIQIGHISKFGLLELSRQRLSTSLGESSHHICPRCSGTGSIRDNESLS 420 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSILRLIEEEALK+NT EVHAIVPV IASYLLNEKR A++ IE RQ GVR +IVP +QM+ Sbjct: 421 LSILRLIEEEALKDNTYEVHAIVPVAIASYLLNEKRKAISDIEQRQKGVRAIIVPYEQMK 480 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TP+Y + R+RKGE SY+L + + S E + L + A Sbjct: 481 TPNYEIRRIRKGETYNKPSYLLATNQDYEITQSSGEMISSNYTYTTEKLQSTARTSSNLV 540 Query: 541 PT 542 P Sbjct: 541 PD 542 >UniRef50_Q0VQP0 Phosphoric diester hydrolase n=5 Tax=Gammaproteobacteria RepID=Q0VQP0_ALCBS Length = 1074 Score = 718 bits (1852), Expect = 0.0, Method: Composition-based stats. Identities = 443/1054 (42%), Positives = 577/1054 (54%), Gaps = 67/1054 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINAT EE+RVALVDGQRLYDLDIE EQKKANIYKGKITR+EPSLEAAFVD+ Sbjct: 1 MKRMLINATHPEEVRVALVDGQRLYDLDIEHRTREQKKANIYKGKITRVEPSLEAAFVDF 60 Query: 61 GAERHGFLPLKEIAREYFPAN-YSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 GAERHGFLPLKEI+R+YF + GR NIK+V++EGQEVIVQ+ KEERGNKGAALTTF Sbjct: 61 GAERHGFLPLKEISRQYFQKDPKDIQGRINIKEVIKEGQEVIVQVAKEERGNKGAALTTF 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ISLAG YLVLMPNNPRAGGISRRIEG++R +LKEAL +L +P+ MG+IVRTAG+G+SAE Sbjct: 121 ISLAGRYLVLMPNNPRAGGISRRIEGEERAQLKEALGALNIPDEMGVIVRTAGLGRSAEE 180 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 LQWDL++ LK W +I A++ R APFLI+QESNVI+RA RDYLR+DIGE+LID+ KV + Sbjct: 181 LQWDLNYLLKLWTSIDDASQDRKAPFLIYQESNVIIRAIRDYLRKDIGEVLIDSKKVYDE 240 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 A+ + + DF KIKLY E PLFS +QIESQIE+AF+REV+LPSGGSIVID TEAL Sbjct: 241 AQGFVQQV-MQDFQHKIKLYDDETPLFSRFQIESQIETAFEREVKLPSGGSIVIDPTEAL 299 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +IDINS+RAT+G DIEETA TNLEAA+EIARQLRLRD+GGLIV+DFIDM P R+QR V Sbjct: 300 VSIDINSSRATKGADIEETALQTNLEAAEEIARQLRLRDIGGLIVVDFIDMGPARNQRDV 359 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 ENR+R+A+ DRARIQ+ ISRFGLLE+SRQRL PSLGE+S VCPRC G G +RD +SL Sbjct: 360 ENRMRDALEADRARIQLGRISRFGLLELSRQRLRPSLGETSSIVCPRCDGQGHIRDVKSL 419 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 +LSILRLIEEE +KE T E+ A VPV +A+YLLNEKR + AIE VR VI+PN + Sbjct: 420 ALSILRLIEEEVMKERTGEIQAQVPVAVATYLLNEKRDPLRAIEKNH-KVRVVIIPNQNL 478 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPP 539 +TPH+ V R+R + + LS+ + L A + + E K E P Sbjct: 479 DTPHFEVERIRDDQTSTQLSHEMDLLEGTKDADIASAQDTEIKTQE-------------P 525 Query: 540 APTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAE 599 A P P P A T A GLL+R F L +F+ + ++ AP+ + Sbjct: 526 AVRLMAPDTAPPPPKPVVAAPT-AQVQNLGLLARLFSWLAQVFTAEPKPAKAKKDAPQRK 584 Query: 600 AKPE------------------------RQQDRRKPRQNNRRDRNERRDTRSERTEGSDN 635 + + + D R R + N+ R+TR++R D+ Sbjct: 585 SDNKPRQQQNNRGRGGNNRNDSNNSDNRAKNDNRNKRDGGKAGDNDNRNTRNKRQNDKDS 644 Query: 636 REENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAK 695 +N + RQA + A+ R + D + RR R+ R +++ + Sbjct: 645 GRKN--DNRQADNRAADNRNDGRADTKD------DGNRNERRGRNDNRRNNRNNDSRGEG 696 Query: 696 ALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIV 755 + + + + + +V R ++Q N + +++ AP + P+ Sbjct: 697 RNDNRNGNRNDNKPDSKVSEGAKPRTRKQDNAADGADSKSSDKGPKAPRRTDAKDNRPLR 756 Query: 756 QEAPAPRTEL----VKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQR 811 + + V P AP+ D+ G P ++ P S Q Sbjct: 757 ERQRPNKANNSDGGVAQPAKAQRTAAPKPPRNEQPAPVDDEGHPA-TKLVPAQ-EPSAQA 814 Query: 812 RRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMV 871 +R ++ T PL E + + Q+ V + Q+ QP V Sbjct: 815 KRDDTPKKAATDKTAPLN------EQSPVTNQPQAAAEPKQEQTVAPAKVQQPAAEQPPV 868 Query: 872 TEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITE 931 T+ PVA A + A P E T + P+ + Sbjct: 869 TKAPVAQTTAAPKVEDDKPASAQPTASDTTTAAPAQEQPTPTADSTPQQPKADTPKAAS- 927 Query: 932 SDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVET 991 +D A +QA E PV AE AA Sbjct: 928 TDDKPAPSAPQQAATTNAAPVAAQPATAAPTQTPAPAKPAEENKSEEKPVTAEPAAPSRA 987 Query: 992 -----VAAVEPEVTVEHNHATAPMTRAPAPEYVP 1020 +P APA +P Sbjct: 988 SNDPRSPGYKPTPVAPAPKVEEKPKPAPASNELP 1021 >UniRef50_C7RBE6 Ribonuclease, Rne/Rng family n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RBE6_KANKD Length = 951 Score = 717 bits (1851), Expect = 0.0, Method: Composition-based stats. Identities = 420/946 (44%), Positives = 560/946 (59%), Gaps = 54/946 (5%) Query: 1 MKRMLINAT-QQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 M+RMLINAT EELRVALVDGQRLYDLDIE G EQKK NIYKGK+TRIEPSLEAAFVD Sbjct: 1 MRRMLINATNHHEELRVALVDGQRLYDLDIELAGREQKKGNIYKGKVTRIEPSLEAAFVD 60 Query: 60 YGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 YGAERHGFLPLKE+AREY N + GRP IK+ L+EGQE+IVQIDKEERGNKGAALTT Sbjct: 61 YGAERHGFLPLKEVAREYM-QNAPSRGRPTIKEALKEGQEIIVQIDKEERGNKGAALTTS 119 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ISLAGSYLVLMPNNPRAGGISRRIEGD+RTELK+ ++ L +P GMG IVRTAG+GKS E Sbjct: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDERTELKQVMSQLPVPNGMGCIVRTAGIGKSLEE 179 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 +Q+D ++ + W IK+ A +RPAPFLI QES+VI RA RDYLR DIGEI+ID P++ E Sbjct: 180 IQYDFNYLIDTWNGIKQVAGTRPAPFLITQESDVITRAIRDYLRPDIGEIIIDRPEIYER 239 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + + RPDF SK+KLY EIPLF+ YQ+ESQIESAFQREVRLPSGGS+V D TEAL Sbjct: 240 VKSELQ-YQRPDFVSKVKLYRDEIPLFNRYQVESQIESAFQREVRLPSGGSVVFDQTEAL 298 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +IDINSARAT+GGDIEETA +TN+EAA+EIARQLRLRD+GGLIVIDFIDM P R+QR V Sbjct: 299 LSIDINSARATKGGDIEETALHTNVEAAEEIARQLRLRDIGGLIVIDFIDMGPPRNQREV 358 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 E L+++V +DRARIQI ISRFGLLEMSRQRL PSL ESS HVCPRC+G+G +R +SL Sbjct: 359 ERVLKDSVARDRARIQIGRISRFGLLEMSRQRLRPSLEESSQHVCPRCTGSGVIRGTDSL 418 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 +LSILRL+E+EA+KE+T EV A+VPV +A++LLNEKR + IE RQ VR V+VPN + Sbjct: 419 ALSILRLMEDEAMKESTAEVQAVVPVEVATFLLNEKRRKIEQIEKRQ-KVRLVVVPNPYL 477 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPP 539 ETPHY VLRV+ GE SY L E + S ++ P Sbjct: 478 ETPHYEVLRVKAGETLEDSSYSLIGDAPEIELVRSSKQ---------------------P 516 Query: 540 APTPAEPA-APVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKA 598 AP +PA V +P AP+ +PGL +R + +LF E+ K ++ + Sbjct: 517 APVSDQPALKGVKPTSPPPAPSKAVKKKKPGLFARLW---TSLFGDDEDKKKKDKQSKNN 573 Query: 599 EAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQ 658 K +R R R ++ N++ +++ + +E+ + QQ+T + +Q Sbjct: 574 RGKYDRNTRGRNTRHQGKKRTNQKGRNQTQAQNKNQPQEQRDGKDNKVQQKTGGRPQKKQ 633 Query: 659 QAEVTEKA---RTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRP 715 + K + + + + +++ ++ ++ +A + E + ++ + Sbjct: 634 NDKPQRKQTGPKHEQKPEQKQEQQNVVEQPKTKRPPRKTRAERMAEAKQPQQPEQGQQPA 693 Query: 716 VQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQ 775 + ++ +Q + V ++ A E V+ P + + P Q Sbjct: 694 AKQEQQPQQAKKP-----------SVRSAIKGKKAQEDSVEAKPVAKKDKAGTDKPTKGQ 742 Query: 776 TAPEQQEENNADNRDNGG---MPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVAC 832 + +E ++ + + + R + + +DE+ Sbjct: 743 DQTKTAKERAPKSKAQAEDIMVYKAHKSLERSVSDVMGYSKDKKDEKPEVIKATQQAAND 802 Query: 833 ASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEV 892 A + A + + + + Q+E V + V + P V + Sbjct: 803 AQVKQAPESASPAKAETSTERHEPQATQTQDE-SVATKLDAETVEPFVNPEVKSEPKTAA 861 Query: 893 AGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQ 938 + E P + AE E V V ++P E+ A A Sbjct: 862 STKTEEPAKEAEQAKE-------PVAKTEVAKKPAKPHEATHASAP 900 >UniRef50_C5BU48 Ribonuclease E n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BU48_TERTT Length = 1070 Score = 713 bits (1840), Expect = 0.0, Method: Composition-based stats. Identities = 425/1040 (40%), Positives = 584/1040 (56%), Gaps = 38/1040 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EELRVALVDGQ LYDLDIE+ EQ+KANIYKGKITRIEPSLEAAFV+Y Sbjct: 1 MKRMLINATQPEELRVALVDGQWLYDLDIENRLKEQRKANIYKGKITRIEPSLEAAFVEY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSA-HGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 R+GFLPLKEI+REYF + GR IKDV++EG EVIVQ+DKEERGNKGAALTTF Sbjct: 61 DKGRNGFLPLKEISREYFLKQPNEIDGRIRIKDVVKEGMEVIVQVDKEERGNKGAALTTF 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ISLAG YLVLMPNNPRAGGISRRI+GDDR+ELK+AL+ +E+P GMG+IVRTAGVG+SAE Sbjct: 121 ISLAGRYLVLMPNNPRAGGISRRIDGDDRSELKDALSQIEIPNGMGIIVRTAGVGRSAEE 180 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 LQWD+++ W I++AA AP + QESNVI+RA RDYLR DIGE+++D+ Sbjct: 181 LQWDMNYLTTLWNNIQEAANQSTAPAFLFQESNVIIRAIRDYLRPDIGEVIVDDIAAYNQ 240 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 A + + P++ SK+KLY +PLF+HYQIE QIE+AF+REV+LPSGGSIVID TEAL Sbjct: 241 AADFVQMV-MPNYRSKVKLYEKSVPLFNHYQIEGQIETAFEREVKLPSGGSIVIDVTEAL 299 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +IDINS+RAT+GGDIEETA TNLEAADEIARQLRLRD+GGL+VIDFIDM PVR+QRAV Sbjct: 300 VSIDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDMGGLVVIDFIDMQPVRNQRAV 359 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 ENR+R+A++ DRAR+Q+ ISRFGLLEMSRQRL PSLGE++ VCPRCSG GT+R +S+ Sbjct: 360 ENRVRDALKMDRARVQVGRISRFGLLEMSRQRLRPSLGETTSKVCPRCSGQGTIRGTKSI 419 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 +LSILRL+EEEA KE + E+ A+VPVP+A+YLLNEKR +++ IE R R ++PN +M Sbjct: 420 ALSILRLVEEEAQKERSAEIRAVVPVPVATYLLNEKRKSISDIENRHQ-TRVTVLPNTEM 478 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPP 539 TPHY V R+R ++T +SY + H+E Q + P P Sbjct: 479 VTPHYEVTRLRDDDDTSEISYTIELNHQED----------------QDDSSAPTAPVAMP 522 Query: 540 APTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAE 599 P + AP A P L++R ALK+LF+ EE KP + ++ Sbjct: 523 KPV-VQQLAPSQPAPEPVKQAPAKTAEGPSLIARIIDALKSLFAPEEEAKPATKGNQRSH 581 Query: 600 AKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQ 659 K + +N + +R + E SDNR++ R R + ++ + R++ + Sbjct: 582 QKKRNANTGNRNNRNRKPRDRDR-----DGDETSDNRKQQRDARSDSGKRDSNNRDNNNR 636 Query: 660 AEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKAL-NVEEQSVQETEQEERVRPVQP 718 + D + RR RR+++ R ++ + + +V+ S E + R + Sbjct: 637 DSNSRDNNGRDNNRNDRRRSRRRKDESGRSSESDTQVQASVDNTSASEDKPARRPANRRG 696 Query: 719 RRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAP 778 R ++RQ E + + EE + + + K + Sbjct: 697 RPQERQRGPLPEVEAGLQQADDGLDTSEELLDSVENLTADTDQENTPAKEGGSSRRRRRS 756 Query: 779 EQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELA 838 + + + P + + + E T + + + A L+ Sbjct: 757 RGRRGERNADSTSENSPELQETQTDEANATPENAEKPVPEATSTINQLETQLDNADAALS 816 Query: 839 SGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEA 898 + + + + E +E + +++ P + ++P A Sbjct: 817 DALSELEGALHEAR-QEHEANAVREAAAAKALLSTAPADNIVAEAETSPETNPAPEADTA 875 Query: 899 PVQV-AEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADI 957 P A+ QP+ E A + ++SD + + Q E E +++ AD Sbjct: 876 PETATAKQQPQSQNAPDSETSVGASPDTANDSSDSDTEIVESAEVQVEAATE-EDKPADT 934 Query: 958 EEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMT---RAP 1014 A+ + V E ++V E V + A AP + A Sbjct: 935 APTPNVADAP-----SESAAGDAVEIAETVEADSVEPAESAPVVAQDEAAAPASSTNTAI 989 Query: 1015 APEYVPEAPRH-SDWQRPTF 1033 A + E +H P + Sbjct: 990 ASDEPSEPAKHERASNDPRY 1009 >UniRef50_Q1QX63 Ribonuclease E n=5 Tax=Gammaproteobacteria RepID=Q1QX63_CHRSD Length = 1175 Score = 713 bits (1839), Expect = 0.0, Method: Composition-based stats. Identities = 438/1021 (42%), Positives = 575/1021 (56%), Gaps = 38/1021 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EELRVALVDGQRLYDLDIES EQKKANIY+G+ITRIEPSLEAAFVD+ Sbjct: 1 MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGRITRIEPSLEAAFVDF 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEI+REYF S GRPNIK+VL+EGQEVIVQ+DKEERGNKGAALTTFI Sbjct: 61 GAERHGFLPLKEISREYFTKEPS--GRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFI 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG +LVLMPNNPRAGGISRRIEGDDR +LK+A+ L +P+ MG+IVRTAG+G+S E L Sbjct: 119 SLAGRFLVLMPNNPRAGGISRRIEGDDRAQLKDAMGQLTVPDKMGVIVRTAGIGRSPEEL 178 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWD+ + ++ WEAI + A R APFLI++ESNVI+RA RDYLR DIGE+LID+P+V E A Sbjct: 179 QWDMDYLVQVWEAITEEAGKRSAPFLIYRESNVIIRAMRDYLRHDIGEVLIDSPEVHEEA 238 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 I + P + +KIKLY ++PLFS +QIESQIE+A+QREV+LPSGG++VID TEAL Sbjct: 239 LHFIRQV-MPSYQNKIKLYADDVPLFSRFQIESQIETAYQREVKLPSGGAVVIDHTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSARATRG DIEETA TNLEAADEIARQLRLRD+GGL+VIDFIDMTP ++QR VE Sbjct: 298 SIDINSARATRGSDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMTPAKNQREVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NR+R+A++ DRAR+QI ISRFGL+EMSRQRL PSLGE+S VCPRC+G GT+RD S+S Sbjct: 358 NRVRDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSIS 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSI+RLIEEEA+KE + ++ AI+PVP+A+YLLNEKRS +N IE RQ GV+ V++PN M+ Sbjct: 418 LSIMRLIEEEAMKERSSQIRAILPVPVATYLLNEKRSVLNDIEQRQ-GVQVVLLPNPDMD 476 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPHY V R+R + + L E + A K ++ A ++ PA Sbjct: 477 TPHYDVQRLRDDQVSEEDGQRSSFELPTTTELTQEPDPALDKPMQRAEAAVKSVAHNAPA 536 Query: 541 PTPAE--PAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKA 598 PT + A P AA A + PA+ GL SR L L +G + T P++Q +A Sbjct: 537 PTSLQHDTAPPATPTPAPAADAPASTPAESGLFSRLVKGLGKLLNGEDSTSPSKQSNDQA 596 Query: 599 EAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQ 658 + + RQ D++ + + +++RR+ + R Sbjct: 597 QQSGASKTTSEARRQRQGSDQSSTSRSDGDTGSKQRQNDDSRRDAGSGNGRGGNRRRRNG 656 Query: 659 QAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQP 718 + +A +D + R RS R N + A+ ++ Q+T + R Sbjct: 657 EESQDRQASRSDNRDGNRSSRSSRGNGGNGGRNENARGSGGSDKGRQDTRSDSRNDARND 716 Query: 719 RRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAP 778 R + A E +A P+ E P T+ Sbjct: 717 SR------------SDSRNDGRNATKGGNKPREENKDAKAGKPKAETPSQSAPDKQATSD 764 Query: 779 EQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELA 838 +Q + D + G P+R+R +PR QR R++ +P A A E Sbjct: 765 KQTTPSQDDAPKSDGKPKRTRNNPR------QRSRKH------AVNPN----AVAEQEKL 808 Query: 839 SGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEA 898 + + Q + Q +P T A A +AP E+ + A Sbjct: 809 QAQQEAEGATSTGDNTQPQATAAQASPEAEPTSTAPSDAPAAA---AAPTDEDESSQAAA 865 Query: 899 PVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIE 958 + + ++ + + + A + P + Sbjct: 866 AKSSQDAKSRNAKSKRSRNASKPARTASETADAAPQGKTSADAPETA-AEAPSQPREAAA 924 Query: 959 EVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEY 1018 P +A+ + + A AP A + Sbjct: 925 AAQPADSATSEAPATANADTRASAPAPSADDASALSEPKAPRDATPSAEAPADETSASDA 984 Query: 1019 V 1019 Sbjct: 985 P 985 Score = 49.4 bits (116), Expect = 8e-04, Method: Composition-based stats. Identities = 67/463 (14%), Positives = 133/463 (28%), Gaps = 42/463 (9%) Query: 543 PAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKP 602 P E A PKA + +AP + + ++T P++ APK++ KP Sbjct: 735 PREENKDAKAGKPKAETPSQSAPDKQA-------------TSDKQTTPSQDDAPKSDGKP 781 Query: 603 ERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEV 662 +R R PRQ +R+ + E + + + + + + QA Sbjct: 782 KR--TRNNPRQRSRKHA----VNPNAVAEQEKLQAQQEAEGATSTGDNTQPQATAAQASP 835 Query: 663 TEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQ 722 + + AP + D+ QA + + + ++ + +P + + Sbjct: 836 EAEPTSTAPSDAPAAAAAPTDEDESSQAAAAKSSQDAKSRNAKSKRSRNASKPARTASET 895 Query: 723 RQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQE 782 + + E A AP AA ++ + AP + Sbjct: 896 ADAAPQGKTSADAPETAAEAPSQPREAAAAAQPADSATSEAPATANADTRASAPAPSADD 955 Query: 783 ENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKV 842 + P+ R + R P + A A ++G+ Sbjct: 956 ASALSE------PKAPRDATPSAEAPADETSASDAPRGEVSDSQPASSAAADEATSTGRD 1009 Query: 843 WIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQV 902 + P V +E + AA + + Sbjct: 1010 TVEQEAATP--VTKDEAATAPATSSADADVDTRQDAA------------SSTATPQDDTL 1055 Query: 903 AEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQ-EETADIEEVV 961 A P + + + A +P + + + E A +PQ E A + Sbjct: 1056 ATPASQAEQKASTDA--PAPQAEPTTPAAAAASSSDEQAPAEVSESQPQAEPKAPSDASA 1113 Query: 962 ETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHN 1004 ++E + QP E + + A+ HN Sbjct: 1114 TSSEEKASTETPAPQPEQTASTEASEPQQATASAPRRRRRAHN 1156 >UniRef50_Q2SK60 Ribonucleases G and E n=3 Tax=Gammaproteobacteria RepID=Q2SK60_HAHCH Length = 1056 Score = 711 bits (1834), Expect = 0.0, Method: Composition-based stats. Identities = 437/1072 (40%), Positives = 583/1072 (54%), Gaps = 92/1072 (8%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EELRVALVDGQ+LYDLDIES EQKK+NIYKGKITRIEPSLEAAFVD+ Sbjct: 1 MKRMLINATQPEELRVALVDGQKLYDLDIESGTREQKKSNIYKGKITRIEPSLEAAFVDF 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEI+REYF + G+ NIKD+L+EGQE+I+Q+DKEERGNKGAALTTFI Sbjct: 61 GAERHGFLPLKEISREYFKSQPQKGGKMNIKDLLQEGQEIIIQVDKEERGNKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPRAGGISRRIEGDDR +LK+A++ L +P+ MGLI+RTAGVG+S++ L Sbjct: 121 SLAGRYLVLMPNNPRAGGISRRIEGDDRDQLKDAMSGLTVPKDMGLIIRTAGVGRSSKEL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q DL + L+ W++I+ A++S+PAPFLI+QESNV++RA RDYLRQDIGE+LID+P+V + A Sbjct: 181 QRDLDYLLQFWDSIRHASDSKPAPFLIYQESNVVIRATRDYLRQDIGEVLIDHPQVHQDA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + A+ P+F ++IKLY +IPLF+ YQIESQIE+AFQREV+LPSGGSIVID TEAL Sbjct: 241 LNFVKAV-MPNFENRIKLYQDDIPLFNRYQIESQIETAFQREVKLPSGGSIVIDPTEALV 299 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSARAT+GGDIEETA TNLEAADEIARQLRLRD+GGLIVIDFIDMTP ++QR VE Sbjct: 300 SIDINSARATKGGDIEETALQTNLEAADEIARQLRLRDIGGLIVIDFIDMTPNKNQREVE 359 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NRL+EA+ DRAR+QI ISRFGLLEMSRQRL PSLGE+ + +CPRC G G++R ESL+ Sbjct: 360 NRLKEALELDRARVQIGKISRFGLLEMSRQRLRPSLGETRNEMCPRCKGQGSIRGVESLA 419 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LS++RLIEEEA KE T EV AI P+ +A+YLLNEKR + + R GV+ ++VPN M+ Sbjct: 420 LSVMRLIEEEAFKERTAEVRAICPISVATYLLNEKRENLAKTQKRH-GVKVIVVPNSHMD 478 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPH+ V R+R +S + + E E ++ Q A +P P Sbjct: 479 TPHFEVQRIRDDNAN--VSEISYNVRPEMEEKNPVESLLHKEVVRQEAAVKTIVPSSTPT 536 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGG---EETKPTEQPAPK 597 P + GLL R + +FSG + K T +P+ Sbjct: 537 P----------------------PSEEVGLLKRLRQKVSKMFSGEKKDSDLKITVAESPQ 574 Query: 598 AEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESR 657 + + + K R R+ +R S + E D ++NRR R + R R Sbjct: 575 TSQDKDAGRRKVKVRDRQDGQRDNQRQGDSRQAESRDGGQDNRRGNRGRNDDRNQRRNER 634 Query: 658 QQAEVTEKARTADEQQAPRRERSRRRNDDKR-----QAQQEAKALNVEEQSVQETEQEER 712 + + R D + + R RN+ + Q + E + S + + +R Sbjct: 635 NDGQKDRRQRDRDSSKGDSQRDQRGRNESAKADSGSQEKSEFNRPRRDRSSGKPVPRPQR 694 Query: 713 VRPVQPRRKQRQLNQKVR------------------------------------YEQSVA 736 + + K + V E Sbjct: 695 QDRPERQDKPEDQEKAVEEVAERRALTAAAASAAEEPAKSEIAKEVWNKSVEAIAESEST 754 Query: 737 EEAVVAPVVEETVAAEPIVQEAPAPR--TELVKVPLPVVAQTAPEQQE-------ENNAD 787 + AP E EP Q A P +E K P ++ + +Q + +++A+ Sbjct: 755 DNTRQAPPKAEEKGVEPAQQTAKQPHQPSEQSKAPQERASEQSAKQSDADSRQRKQDDAE 814 Query: 788 NRDNGGMPRRSRRSPRHLRVS----GQRRRRYRDERYPTQSPMP----LTVACASPELAS 839 +S R R + RR R+ P L + A + A+ Sbjct: 815 ANQQNAGEDGQEKSARRARADNDPRNKARRPKREAAEAKSEEAPKESQLERSVAQAK-AN 873 Query: 840 GKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAP 899 + +E R + ++ E A +P + P ++ A Sbjct: 874 APAMGNTSVESKNKEDKKEGRAAKASAIEQPKKEATPEAKDKPDTA-PATDKGATKAAPE 932 Query: 900 VQVAEPQPEVVETTHPEVIAAAVT--EQPQVITESDVAVAQEVAEQAEPVVEPQEETADI 957 V + + T + P+ + + A + A + PQ+ A Sbjct: 933 PTVEKKPSDKPAATAAQEEEEPKRAFNDPREVRKRIQAQKVQAGNDASSALAPQQIAAPK 992 Query: 958 EEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAP 1009 T E + E + A P + EVE + A Sbjct: 993 PPEAATIEPKMEAKEPEPKKA-PAAEKPREEVEPPKSAPSAPEATVADVKAE 1043 >UniRef50_Q2P196 Ribonuclease E n=28 Tax=Proteobacteria RepID=Q2P196_XANOM Length = 1240 Score = 709 bits (1829), Expect = 0.0, Method: Composition-based stats. Identities = 424/1061 (39%), Positives = 553/1061 (52%), Gaps = 64/1061 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EELRVA+VDGQ LYD+DIE P EQKK+NIYKG+ITR+EPSLEAAFVDY Sbjct: 1 MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEI+R+YF A H + I+++LREGQE++VQ+DKEERGNKGAALTTFI Sbjct: 61 GAERHGFLPLKEISRDYFQAGVD-HNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFI 119 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG Y+VLMPN+P AGG+SRRIEG+DR LKEAL L++P+ MG+I+RTAGVG+ AE L Sbjct: 120 SLAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEEL 179 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDL + L+ W+AI +AA S+PA FLI+QES +I+RA RDYLR D+GEIL+D P++ A Sbjct: 180 QWDLDYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADA 239 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++ + + P K+K YT +IPLF+ +QIESQIE A++R VRLPSGGSIV+D TEALT Sbjct: 240 QEFMKQV-MPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALT 298 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 A+D+NS+RAT+G DIEETAF TNLEAA+E+ARQLRLRDLGGL+VIDFIDM +HQR VE Sbjct: 299 AVDVNSSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVE 358 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N+L+ A++ DRAR+Q+ ISRFGL+EMSRQRL PSLGESS VCPRC G G +R ESLS Sbjct: 359 NKLQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLS 418 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSI+R+ EE A+KENT +V PV IA+YLLNEKRSA+ IE R + +IV ++Q+ Sbjct: 419 LSIIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHESP-IIIVADEQLH 477 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPHY V R+R+ E E PS + RK P PPA Sbjct: 478 TPHYEVTRLRENE------------LGEDSGKPSYQRGTPRKLPVHALTKAQLNIPAPPA 525 Query: 541 PTPAEPAAPVV-------APAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQ 593 T +P+ P AP AAPA P ++ G LK +F G E P + Sbjct: 526 VTSIKPSQPAPVREETPAPVAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPLAPAPE 585 Query: 594 PAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAET 653 P R + R RNER + +R +G D R +Q Sbjct: 586 SIP-----------RPRQNDAGRNHRNERGERGGQRRDGRDARNGGHSGNQQRGNGNGAN 634 Query: 654 RESRQQAEVTEKARTADEQ----------QAPRRERSRRRNDDKRQAQQEAKALNVEEQS 703 +E R + + A + PR E + +QAQQ+ + Sbjct: 635 KERRDERRQPASGQGAQNGAQAQQQAQTPKPPRNEAQSPKQQQPQQAQQQKPKPQNQTPR 694 Query: 704 VQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRT 763 T ++ + + + + ++ + Q+V A +A A A A Sbjct: 695 PPRTPAQQDGAQAERQPRPARQDEGMAAAQTVTSTAAMATTSSVVAAITDAAAPATAQTN 754 Query: 764 ELVKVPLPVVAQTAPEQQEENNADNR----DNGGMPRRSRRSPRHLRVSGQRRRRYRDER 819 V T + AD + R RR R R Sbjct: 755 ANEAAQAHAVDVTVSASTADPGADASVAAPAQDAAGDDAANGEGGSRRRRGRRGGRRRRR 814 Query: 820 YPTQSPMPLTVACASPEL--------------ASGKVWIRYPIVRPQDVQVEEQREQEEV 865 + + E + G + + + ++ Sbjct: 815 GVGANGGEGGASVDGLEGDDLDGDADNDLDSDSEGDAAAAQAHASAAPRAGQPEFDFDDD 874 Query: 866 HVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEV-VETTHPEVIAAAVTE 924 P V P A PV +E A + P +A V + Sbjct: 875 APAPTVRAKPEPTAQAAAKPRPVPKERAEPQVGNDTSSTTAPVSNTVPASQPPVATPVAK 934 Query: 925 Q--PQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVV 982 + A A+ A AD+ + + APV Sbjct: 935 ADTNHERPAAPTVAADAPAKPAPAATASTAVNADVAATQAVKQRPAPVAQHAPAAPAPVA 994 Query: 983 AEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAP 1023 A V A V +TAP+ AP +P Sbjct: 995 APAPVASTPVPAGAAVAPVAETASTAPVATPSAPASTVASP 1035 >UniRef50_Q1YTQ8 Ribonuclease E n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTQ8_9GAMM Length = 1008 Score = 707 bits (1825), Expect = 0.0, Method: Composition-based stats. Identities = 387/782 (49%), Positives = 507/782 (64%), Gaps = 34/782 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINA+ EE+RVA+VDGQ+LYDLDIE+ EQKKANIYKGKITR+EPSLEAAFVDY Sbjct: 1 MKRMLINASHTEEVRVAMVDGQKLYDLDIENRTREQKKANIYKGKITRVEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GA+RHGFLPLKEI+REYF S GR NIKD +REGQE+ VQ++KEERG+KGAALTTFI Sbjct: 61 GADRHGFLPLKEISREYFKGKSSDGGRVNIKDAIREGQEIFVQVEKEERGSKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPRAGGISRRIEG++R +L+EA+ L++PEGMG IVRTAG+G++ E L Sbjct: 121 SLAGRYLVLMPNNPRAGGISRRIEGEERADLREAMRGLDIPEGMGAIVRTAGIGRATEEL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDL + L+ W I+ AE AP + QESNVIVRA RDYLRQD+GE+++D+ LA Sbjct: 181 QWDLDYLLQLWNTIEAEAEGAKAPHFLFQESNVIVRAIRDYLRQDVGEVIVDSQDAYNLA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 I + PDF++K+K Y +IPLF+ YQIE+QIE+AF+REV LPSGGSIVID TEA+ Sbjct: 241 AAFIGTV-MPDFTNKVKFYQEQIPLFNRYQIENQIETAFRREVSLPSGGSIVIDITEAMV 299 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSARAT+GGDIEETAFNTN EAA+E+ARQLRLRD+GGLIVIDFIDM RHQ+ VE Sbjct: 300 SIDINSARATKGGDIEETAFNTNKEAAEEVARQLRLRDVGGLIVIDFIDMLNTRHQKEVE 359 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N +REA++ DRAR+Q+ ISRFGLLEMSRQRL PSL E+ +CPRC G GT+R SL+ Sbjct: 360 NTIREALKIDRARVQVGRISRFGLLEMSRQRLRPSLEETMSKICPRCKGQGTIRGTRSLA 419 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSILRLIEEEA KE ++E+ AIVPV +A++LLNEKRS + IE+R + + V++PN QME Sbjct: 420 LSILRLIEEEAQKEFSKEIRAIVPVSVATFLLNEKRSEIADIESR-NKINVVVLPNTQME 478 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPH+ V+R+R ++ + KL E + E++ P P VP Sbjct: 479 TPHFEVVRIRAQDDDDSDGEFSYKLAHELSSKEPEQDLERTSAPL-PISEPAVKTLVPHK 537 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 P AP++ A +PGLL R + +++F G EA Sbjct: 538 P------APIMPEKAAPTAAAAVKTEKPGLLKRIW---ESIFGGSS-----------TEA 577 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 K + + +PR +N R + +D+R+ + N + + + +S + A Sbjct: 578 KKTEDEKKTRPRGSNSRRGGQNQDSRNRQGNRRPNNRN------RNRNRNEGRNDSNRDA 631 Query: 661 EVTEKARTADEQQAPRRERSRRRNDDKR-QAQQEAKALNVEEQSVQETEQEERVRPVQPR 719 E TE + A ++ + R RND R A+Q+ + V+ S ++ + Sbjct: 632 EGTETQ----AKSADKQGQGRGRNDQSRPAAKQDTREQKVDSASTATQTADKGPETGEGG 687 Query: 720 RKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPE 779 +++ N K R + + V V E ++A+ V+ + V A Sbjct: 688 ELKKRPNDKRRGPRRRRQRQDVPANVTEQLSADIAVETSTVAADSSPSVESKTAAPETAA 747 Query: 780 QQ 781 Q Sbjct: 748 QV 749 >UniRef50_A3JIF1 Ribonucleases G and E n=2 Tax=Gammaproteobacteria RepID=A3JIF1_9ALTE Length = 1092 Score = 700 bits (1807), Expect = 0.0, Method: Composition-based stats. Identities = 457/1077 (42%), Positives = 581/1077 (53%), Gaps = 31/1077 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINAT EELRVALVDGQRL+DLDIES EQKKANIYKGKITR+EPSLEAAFVD+ Sbjct: 1 MKRMLINATHPEELRVALVDGQRLFDLDIESSSREQKKANIYKGKITRVEPSLEAAFVDF 60 Query: 61 GAERHGFLPLKEIAREYFPANY-SAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 GA+RHGFLPLKEI++EYF + G+ NIKDV+ EGQEVIVQ+DKEERGNKGAALTT+ Sbjct: 61 GADRHGFLPLKEISKEYFKKSPGQIEGKVNIKDVIAEGQEVIVQVDKEERGNKGAALTTY 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ISLAG YLVLMPNN RAGGISRRIEG++R +LKEA+ +++P+ MG+IVRTAG+G+++E Sbjct: 121 ISLAGRYLVLMPNNARAGGISRRIEGEERAQLKEAMNQVQVPKSMGIIVRTAGIGRNSEE 180 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 LQWDL + ++ WEAI +AA R APFLIHQESNVI+RA RDYLRQDIGE+LID V E Sbjct: 181 LQWDLDYLVQFWEAITQAAGERKAPFLIHQESNVIIRAVRDYLRQDIGEVLIDAAAVHED 240 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + A+ P F +KIKLY+ EIPLFS YQIE QIE+AFQREV+LPSGGSIVID TEAL Sbjct: 241 VLNFVRAV-MPTFENKIKLYSDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEAL 299 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +IDINS+RAT+G DIEETA TNLEAA+EI RQLRLRD+GGLIVIDFIDMTP R+QR V Sbjct: 300 VSIDINSSRATKGHDIEETALQTNLEAAEEIGRQLRLRDMGGLIVIDFIDMTPARNQREV 359 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 EN++REA+ DRAR+Q+ ISRFGLLEMSRQRL PSLGE+ VCPRC G GT+R ESL Sbjct: 360 ENKMREALEIDRARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIESL 419 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 +LSI+RLI EE+ K+ T EV A+VPV +A++LLNEKR + IE Q+ V VIVP QM Sbjct: 420 ALSIMRLIYEESSKDKTGEVRAVVPVSVATFLLNEKRKQLATIEANQE-VSIVIVPVPQM 478 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPP 539 ETPH+ ++R+R E S + EEE A+ E+P A+ V P Sbjct: 479 ETPHFEIIRMRDDETG---SEHVSSHQVAQEYSEREEEVADVTVQEKPVREQAAVKSVRP 535 Query: 540 APTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAE 599 A PA A A A G+ SR + F+G EE++P + Sbjct: 536 ASPVPVPATKPAA---TPAKAAAEKTRDEGMFSRLGRKIALFFNGEEESQPAADSSSNRN 592 Query: 600 AKPERQQDRRKPR-QNNRRDRNERRDTRSERTEGSDNREENRR------------NRRQA 646 AK DR + R ++R DR +RR TR R + D R R + Sbjct: 593 AKQAGGDDRSRQRPTSSRNDRQDRRKTRVARDDQQDTRSRGERSSSSSSSGSSNLSDDNR 652 Query: 647 QQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQE 706 +T ++R + + R+ D+ A + + + + + Q + A + Q+ Sbjct: 653 SNRTDDSRSRSNRGRTRSEGRSEDKTNAGSQNSNAQSSSAQSSNSQSSSAQSNNVQNGN- 711 Query: 707 TEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELV 766 T+ RR + ++ R P E+ I Q++ R+ Sbjct: 712 TQSSGNDTRRDGRRDNQNRSRSNRDSSRDTSRDGNKPNAEQADQKPAIEQKSAELRSSSP 771 Query: 767 KVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRR---SPRHLRVSGQRRRRYRDERYPTQ 823 + PRRSR SP VS R+ Q Sbjct: 772 SPSYNDQNDAQSPAVAGKAGGDEKRRSKPRRSRGRDGSPAEKPVSNPAERKAARSEIHQQ 831 Query: 824 SPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHV-QPMVTEVPVAAAIEP 882 P T A K + + Q EQ V Q P + +P Sbjct: 832 DTQPETRDAEDRAKAKAKAAEKPADAQVQPSAAATPAEQAAPQVAQNPADASPETTSEQP 891 Query: 883 VVSAPVVE--EVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEV 940 V + PV + E A P E+ H A + + A + Sbjct: 892 VAAKPVEQSPEPEVSKPALPASEVPVEAAEESAHVSAAKAIPSRIDAYNGGTRKAADKAE 951 Query: 941 AEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVT 1000 A V P ++A ++ V AE AE A E A + Sbjct: 952 KADAPEVDSPDTDSAPVDAV--EAEAPKAETHTAEATPADAEDESADKATKPTRKRTPAR 1009 Query: 1001 VEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARP 1057 T P +A ++ + T A + A A AAP P Sbjct: 1010 KAKATKTEPANEQEPQPANTDASDNNAAKADTAAEQPTAVAPVADAASETPAAPVAP 1066 >UniRef50_C5AD76 Ribonuclease E n=21 Tax=Proteobacteria RepID=C5AD76_BURGB Length = 1125 Score = 699 bits (1804), Expect = 0.0, Method: Composition-based stats. Identities = 375/794 (47%), Positives = 496/794 (62%), Gaps = 31/794 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRML NATQQEELRVA+VDGQ+L D+DIE+ G EQ+K NIYKG ITRIEPSLEA FV+Y Sbjct: 1 MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +RHGFLP KE+AR+YF I+D LREGQE+IVQ++KEERGNKGAALTTFI Sbjct: 61 GEDRHGFLPFKEVARQYFRDGVDMRSA-RIQDALREGQELIVQVEKEERGNKGAALTTFI 119 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPR GG+SRRIEGD+R EL+E +A LE+PEGM +I RTAG+G+SAE L Sbjct: 120 SLAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLEIPEGMSMIARTAGIGRSAEEL 179 Query: 181 QWDLSFRLKHWEAIKKAAESRPA--PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 QWDL++ L+ W AI+ A++S A P LI+ ES++++RA RDY + DIGEILID ++ + Sbjct: 180 QWDLNYLLQLWHAIEAASKSGHAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHD 239 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 AR + + PD K+K Y ++PLFS +QIE QIE+A+ R V LPSGG+IVID TEA Sbjct: 240 QARAFM-DIVMPDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEA 298 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 L AID+NSARAT+G DIEETA TNLEAADE+ARQLRLRDLGGLIVIDFIDM + QR Sbjct: 299 LVAIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQRE 358 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 VE RL++A++ DRAR+Q+ ISRFGL+E+SRQRL P+L E SH CPRC+GTG +RD ES Sbjct: 359 VEQRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTES 418 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 +L +LR+I+EEA+KENT +H VPV + ++LLNEKR +N IE+R V V++PN Sbjct: 419 SALQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRF-KVGIVLIPNKH 477 Query: 479 METPHYHVLRVRKGE---ETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMP 535 ++TPHY + R+R + + P S+ + + E A L SE +++R +P Sbjct: 478 LDTPHYKLERLRHDDARLDDPRASWKMAE--EAARELESETGYSKRTGDVKPKQEAAVKG 535 Query: 536 DVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQ-- 593 P P P P AP AAP A FFG +K+LF G Sbjct: 536 ITPDHPAPGAPQREAAPVAPAAAPVAAAPVPVAASGGGFFGWIKSLFGGQPPAPAPAPAP 595 Query: 594 -PAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAE 652 + +A+P R++ + R DRN + R+ + G+ + + +R + E Sbjct: 596 VQEVETQARPSRERGEKSERGERGGDRNRNPNRRNGQPAGARDTQAAAGSRVPQARGERE 655 Query: 653 TRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEER 712 +E R+ E +AR + PR R R + R V+E + Sbjct: 656 VKEGREPRENRGEAREGRGNREPREAREGREAREPR--------------EVREPREPRA 701 Query: 713 VRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPV 772 R + R+ R+ + E +V + AP E E + P P ++ Sbjct: 702 AREPREAREPREGREP--RESAVTADGAEAPRQERRERGERGERRKPVPHAATLETV--N 757 Query: 773 VAQTAPEQQEENNA 786 +TAP + E+ Sbjct: 758 RGETAPAEATEDAE 771 >UniRef50_Q2YA54 Ribonuclease E n=7 Tax=Betaproteobacteria RepID=Q2YA54_NITMU Length = 977 Score = 698 bits (1800), Expect = 0.0, Method: Composition-based stats. Identities = 403/1028 (39%), Positives = 548/1028 (53%), Gaps = 75/1028 (7%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRML NATQ EELRVA+VDGQ+L DLDIES G EQ+K+NIYK ITR+EPSLEAAFV+Y Sbjct: 1 MKRMLFNATQPEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKAVITRLEPSLEAAFVEY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ERHGFLP KEI+R Y + GR ++D L EGQE+IVQ+DK+ERG KGAALTT+I Sbjct: 61 GGERHGFLPFKEISRSYLKESPDP-GRVRVQDALHEGQELIVQVDKDERGTKGAALTTYI 119 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPR GG+SRRIEG+DR EL++ ++ L +P+GM +I RTAG+G++ E L Sbjct: 120 SLAGRYLVLMPNNPRGGGVSRRIEGEDRAELRDVMSHLNIPQGMSIIARTAGIGRTEEEL 179 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDL++ L+ W AI+ A++ + FLI+QES++++RA RDY Q+IGEILID + E A Sbjct: 180 QWDLNYLLQLWRAIEDASKGQSGAFLIYQESSLVIRAIRDYFNQEIGEILIDTESIYEQA 239 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 Q + + P +++KLY ++PLFS +QIE QIE+A+ R+V LPSGG+IVID TEAL Sbjct: 240 CQFMGHV-MPGNVARVKLYRDDVPLFSRFQIEHQIETAYSRQVTLPSGGAIVIDHTEALV 298 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ++D+NSARATRG DIE+TA TNLEAADEIARQLRLRDLGGL+VIDFIDM R+QR VE Sbjct: 299 SVDVNSARATRGSDIEQTALATNLEAADEIARQLRLRDLGGLVVIDFIDMEVSRNQREVE 358 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NRL +A+R DRAR+Q+ ISRFGLLE+SRQRL PSLGESS+ CPRC GTG +R +S + Sbjct: 359 NRLHDALRYDRARVQMGKISRFGLLELSRQRLRPSLGESSYISCPRCHGTGHIRGTDSSA 418 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 L ILR+I+EEA+KENT +HA VPV +A+YLLNEKR+ ++AIE R V V++PN +E Sbjct: 419 LHILRIIQEEAMKENTAVLHAQVPVDVATYLLNEKRAEIHAIEARL-KVSVVLIPNIHLE 477 Query: 481 TPHYHVLRVRKGEE---TPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 TP+Y + R+R + SY + + + + LPS + E K Q A P Sbjct: 478 TPNYSITRLRHDDVKLGEVQTSYQMVEKPAQDIPLPSSGQ--EPKPMRQQAAVRGITP-- 533 Query: 538 PPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPK 597 PAP P LL + FG K GG K P Sbjct: 534 -------------AQPAPVREQKPQHEPEPLSLLDKIFGWFKQ---GGVGEKTVRHEPPV 577 Query: 598 AEAKPERQQDRRKPRQNNRRDRNERRDTRSER-TEGSDNR--EENRRNRRQAQQQTAETR 654 A A PE + R+ R+ R NE+ +R + R E + ++ R Sbjct: 578 AAAHPEERGQGRRDRREGRIGENEKAARAVQRPRDARAERGAEISPSGAPDLTREAVPQR 637 Query: 655 ESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQ---EAKALNVEEQSVQETEQEE 711 + R +A+ T+ R A ++ + + R + K ++ +A+ E+ + + Sbjct: 638 QERSEAK-TQGERAAAKKHPRSQREEKPRTELKPSSELPPATEEAVQPSEEGSRRRRRGG 696 Query: 712 RVRPVQPR--RKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVP 769 R R R R R+ Q + + + + A E A P L P Sbjct: 697 RQRDRSERLDRAAREARQAIAKDSPLQQSAEQVAHEENPAADLISGAINGIPPLILASTP 756 Query: 770 LPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLT 829 L Q ++ A N + R R P MP Sbjct: 757 L---EQKEASKESPAGAKNNTPSELLRTDRTLP---------------------VIMPEA 792 Query: 830 VACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVV 889 V+ ASPE V + + E+ + + +T E A Sbjct: 793 VSEASPE-----VVPQVAAMESTSAPAVTIAEKVALANEQQITPESPDRLPEDRREAATA 847 Query: 890 EEVAGVVEAPVQVAEPQPEVVETTHPE-------VIAAAVTEQPQVITESDVAVAQEVAE 942 V + +EP EV ++A T P E + A+E + Sbjct: 848 AAVTVTGAPILIASEPLVEVEAARVVPEDIPSQIPLSALETAMPHTKIEQEEVPAKEGHQ 907 Query: 943 QAEPVVEPQEETADIEE----VVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPE 998 P + D+ ++ET + E A+ A +E + Sbjct: 908 AVPPQQPGATPSLDLGAAGLIMIETLPEKIRPAETEAEGEAMKAQPRRRRTPPPPVIEQQ 967 Query: 999 VTVEHNHA 1006 + Sbjct: 968 EALVQVET 975 >UniRef50_B4RR31 Rne n=31 Tax=Neisseriaceae RepID=B4RR31_NEIG2 Length = 919 Score = 696 bits (1796), Expect = 0.0, Method: Composition-based stats. Identities = 385/847 (45%), Positives = 519/847 (61%), Gaps = 55/847 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRML NATQ EELRVA+VDGQ L DLDIE+ G EQ+K NIYKG ITRIEPSLEA FVDY Sbjct: 1 MKRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +RHGFLP KE++R YF GR I+DVL+EG EVIVQ++K+ERGNKGAALTTFI Sbjct: 61 GTDRHGFLPFKEVSRSYFLGYEG--GRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFI 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPR GG+SRRIEG++R ELK A+A L++P GM +I RTAG+G+SAE L Sbjct: 119 SLAGRYLVLMPNNPRGGGVSRRIEGEERQELKAAMAQLDIPNGMSIIARTAGIGRSAEEL 178 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 +WDL++ + W+AI++A ++ P+L+ ES++++RA RDY R DIGEIL+DN +V + Sbjct: 179 EWDLNYLKQLWQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQV 238 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + ++ + P + ++KLY PLFS +QIE QIESAF R V LPSGG+IVID TEAL Sbjct: 239 AEFMSYV-MPGNAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +ID+NSARATRG DIE+TAF TN+EAA+E+ARQ+RLRDLGGL+VIDFIDM +HQR VE Sbjct: 298 SIDVNSARATRGADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N LR+A+++DRAR+Q+ +SRFGLLE+SRQRL P+LGESSH CPRC+GTG +R ES + Sbjct: 358 NVLRDALKKDRARVQMGKLSRFGLLELSRQRLKPALGESSHAACPRCAGTGVIRGIESTA 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 L +LR+++EEA+K+NT EV A VPV +A++LLNEKR+ + A+E R D V V++PN +E Sbjct: 418 LHVLRMVQEEAMKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLD-VNVVLIPNIHLE 476 Query: 481 TPHYHVLRVRKG--EETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVP 538 PHY + R+R EE SY + +A P E+E A+ E+ A Sbjct: 477 NPHYEINRIRTDDVEEDGEPSY-------KRVAEPEEDESAKPFGGEKAKAA-------- 521 Query: 539 PAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKA 598 P PA +PAP AAP + F LK +F G E Q P A Sbjct: 522 -RPEPAVKGVRHTSPAPTAAP-----EKKTSWWDSFKAWLKRIFGGSET-----QAVPAA 570 Query: 599 EAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQ 658 E +R R + R N RR+ R + EGS E + A Q+ + + Sbjct: 571 ETSEKRSTANR----SGSRANNRRRNPRRSKREGSK-IEVREAAGKTAGQKARADKAETR 625 Query: 659 QAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQP 718 + D + R N+ + Q++ A V + + ETE + Sbjct: 626 NNGNRRRNERGDRA-------TERANEAEIQSRNVQPAAPVADAAPPETEGQ-----TGK 673 Query: 719 RRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAP 778 RR+ N++ + A A A E EP E + + + ++ A Sbjct: 674 RRRNGSRNERGQTAPETAAVAETAVQTAENTPPEPYTAEDKGSKPKSERNRRERDSRDAK 733 Query: 779 EQQEENNADNRDNGGMPRR---SRRSPRHLRV---SGQRRRRYRDERYPTQSPMPLTVAC 832 E++E NN +R G R + + ++L + + + R T + P+TV+ Sbjct: 734 ERRERNNQRDRRQNGKKRNIPSAAKIEQYLNIHDTADKVRSAAAHVFGETDANAPITVSI 793 Query: 833 ASPELAS 839 A P +A+ Sbjct: 794 ADPLIAT 800 >UniRef50_Q0A8Q8 Ribonuclease E n=8 Tax=Gammaproteobacteria RepID=Q0A8Q8_ALHEH Length = 1073 Score = 694 bits (1792), Expect = 0.0, Method: Composition-based stats. Identities = 435/952 (45%), Positives = 531/952 (55%), Gaps = 38/952 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EELRVALVDGQ+LYDLDIE+P EQKKANIYKG ITR+EPSLEAAFV Y Sbjct: 1 MKRMLINATQPEELRVALVDGQQLYDLDIETPAREQKKANIYKGTITRVEPSLEAAFVQY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHG-RPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 GAERHGFLP KEIA Y+ A G RP+I+D +REGQEV+VQ+DKEERG KGAALTT+ Sbjct: 61 GAERHGFLPFKEIAPSYYREGLKADGGRPSIRDAVREGQEVVVQVDKEERGTKGAALTTY 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ISLAG YLVLMPNNPRAGG+SRRIEG DR E++EAL L++PEGMGLIVRTAGVG++ E Sbjct: 121 ISLAGRYLVLMPNNPRAGGVSRRIEGSDRAEIREALRQLDVPEGMGLIVRTAGVGRTVEE 180 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 LQWDL + LK W AI+KAAE+R APFLI+QES+VI+RA RDYLR DIGEILID+P+V E Sbjct: 181 LQWDLDYLLKLWSAIQKAAEARSAPFLIYQESDVIIRALRDYLRSDIGEILIDDPQVFEK 240 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 A + + + P K+K Y +PLF+ YQIESQIESAFQR+VRLPSGG+IVID TEAL Sbjct: 241 AVEFVEQV-MPYNRQKLKYYDDRVPLFTRYQIESQIESAFQRDVRLPSGGAIVIDHTEAL 299 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +IDINSARAT+G DIEETA +TNLEAADEIARQLRLRDLGGLIVIDFIDM P R+QR V Sbjct: 300 ISIDINSARATKGSDIEETALHTNLEAADEIARQLRLRDLGGLIVIDFIDMGPNRNQREV 359 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 ENRLREAV+ DRAR+QI ISRFGLLEMSRQRL SLGES VC RC G GTVR ESL Sbjct: 360 ENRLREAVKADRARVQIGRISRFGLLEMSRQRLRSSLGESHQEVCARCGGQGTVRSVESL 419 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 +LSILR++EEEA+KE T V A +PV +A++LLNEKR +++ IE R V V++PN M Sbjct: 420 ALSILRIVEEEAMKEKTGTVLAQLPVDVATFLLNEKRPSISEIEDRHR-VAVVLIPNRTM 478 Query: 480 ETPHYHVLRVR-KGEETPTLSYMLP-KLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 ETPHY V R+R E T SY L + H E E E A R Sbjct: 479 ETPHYDVQRLRSDDESTEDPSYRLASEEHPEPSPEWLEREAAPRSEEPVVQRVQPPSAPP 538 Query: 538 PPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPK 597 P AP P P A + A+ L+ F L+ F + Q P Sbjct: 539 PTAPVEESPKEEAPPPQRDAPEGSGASDVGISGLTGLFQRLRGFFGREADNDSAGQEGPV 598 Query: 598 AEAKPERQQDRRKPRQN--NRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRE 655 E P R ++ N R + RT E+ R + E+ Sbjct: 599 GEKAPAASGRRGSDQKGATNGRRGGGSNGGKGGRTRQKARPEDGRSASQPEATGKPESDA 658 Query: 656 SRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQ-ETEQEERVR 714 R E E A + + RR RRR Q ++ ++Q Q E Sbjct: 659 RRDADETAEGAGRSGRSRRGRRGGRRRRRSGSTGGGQPEESAARQDQKGQTPPAAEAADD 718 Query: 715 PVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEP----IVQEAPAPRTELVKVPL 770 + R + R + A E+ A +P I +E Sbjct: 719 APRDRAAGKAEAAAERPREGDRAAAEKPAASEKVKADKPALPTITEEEIQGSATPQLKDW 778 Query: 771 PVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTV 830 P Q A E +A D G S ++ + QR E T++ P + Sbjct: 779 PPRGQVATEAASPESAPADDESGTAAGSPKATQ-----AQRPATADTEASDTKADAPASS 833 Query: 831 ACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVE 890 + +G P D E+ +P +++P Sbjct: 834 GETPADQPTGA-----PPAAGGDGAKAPTAEKAAGE-KPGARRKRSKPSVQPGT------ 881 Query: 891 EVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAE 942 V+ + EP P E+D A + +VA Sbjct: 882 --PPVLPQDIGPDEPSVRSGRPRISAAA-------PTEGNEADTAGSADVAP 924 >UniRef50_D0L1K6 Ribonuclease, Rne/Rng family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1K6_HALNC Length = 1016 Score = 694 bits (1790), Expect = 0.0, Method: Composition-based stats. Identities = 421/1048 (40%), Positives = 573/1048 (54%), Gaps = 65/1048 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EE+RVALVDGQ LYD+DIE+PGHEQKK+N+YK ITRIEPSLEA FV+Y Sbjct: 1 MKRMLINATQAEEIRVALVDGQTLYDIDIETPGHEQKKSNVYKALITRIEPSLEAVFVNY 60 Query: 61 GAERHGFLPLKEIAREYFPAN-YSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 GA+RHGFLP KEIAR YF + GRP IK L+EGQE+IVQ++KEERGNKGAALTTF Sbjct: 61 GADRHGFLPFKEIARSYFDSEAVDDKGRPIIKSALKEGQEIIVQVEKEERGNKGAALTTF 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 +SLAG YLVLMPNNPRAGG+SRRIEGDDR E+K AL+ L +PEGMGLIVRTAGVG+ Sbjct: 121 VSLAGRYLVLMPNNPRAGGVSRRIEGDDRAEIKAALSELVVPEGMGLIVRTAGVGREPAE 180 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 LQ DL + + W+AI K +E+R APFLI+QES++I+RA RDY+R DIGE+LID P + + Sbjct: 181 LQSDLDYLQQVWDAIVKKSEARKAPFLIYQESDLIIRALRDYMRNDIGEVLIDEPNMHQQ 240 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 A + L PD KI+LY PLF+ YQIESQIESA++R V LPSGG +V D EAL Sbjct: 241 ALDFVN-LVSPDSVDKIRLYQDRTPLFTRYQIESQIESAYERNVTLPSGGELVFDVAEAL 299 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 TA+DINS R+T+G DIE+TAFNTNLEAADEIARQLRLRDLGGL+VIDFIDM +HQR V Sbjct: 300 TAVDINSGRSTKGQDIEDTAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMGQPKHQREV 359 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 ENRLR+A++ DRAR+Q+ ISRFGLLEMSRQRLS SL ES+ HVCPRC G G +R ESL Sbjct: 360 ENRLRDALKMDRARVQLGRISRFGLLEMSRQRLSASLEESAQHVCPRCMGQGHIRSVESL 419 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 +LSI+RL+ +E++K+ T V A VPV + +YLLNEKR ++ IE V +++PN + Sbjct: 420 ALSIMRLMIDESMKDQTGRVVAQVPVDVGTYLLNEKRLQLHEIEQNHQ-VEVLVIPNINL 478 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPP 539 ETPH+ + RVR+ + + + + A+A+P E +RP P +P P Sbjct: 479 ETPHFKIERVRRSDLAESPANSRALIEPLAVAVPDLER--APRRPAAPVEPIRPVPQSAP 536 Query: 540 APTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAE 599 P V PA + A G L + +F G++ E AP+ Sbjct: 537 RPKVVASVPDVAT-----EPAASTSAANIGALGLLKRVIGQIFGAGDKRVEAEVAAPRDP 591 Query: 600 AKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQ 659 A+ + + NR N ++ +E E+ RR+ + + ++ + Sbjct: 592 ARKASSNRPPRAKDENRATPNRLPRAATQTSESEARLEDKRRDEGKVEG-------TKPE 644 Query: 660 AEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPR 719 + R+ + A + ++ EA A+ + + + + + + Sbjct: 645 GSSNRRRRSRSRKPAEGQRDAQVNTAASANQPAEAPAVTTDTAEGKGSAKAPE-KTTARQ 703 Query: 720 RKQRQLNQKVRY----EQSVAEEAVVAPV-----------VEETVAAEPIVQEAPAPRTE 764 R+ R VR EQS+ ++ + APV V+ AA A + Sbjct: 704 REPRSSEPAVRPIAAHEQSLIDQQLKAPVASPSALPLNVAVKRDPAAALAPNAALGLLAD 763 Query: 765 LVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQS 824 V VP V A P+ + + A ++ + +P V Q ++ Sbjct: 764 DVIVPALVAAAITPKAEAQIAAPQPEDTAANEVNV-APSAPMVESQ-----------AEA 811 Query: 825 PMPLTVACASPELASGKVWIRYPIVRPQDV--QVEEQREQEEVHVQPMVTEVPVAAAIEP 882 P T+A +P +A P+ + V EE + + A E Sbjct: 812 PTDTTIAAVTPVVAE-------PVSAAEPVIHTKEEMPSVAATESPVETSTLIPEAIAEQ 864 Query: 883 VVSAPVV--EEVAGVVEAPVQVAEPQPEVV-ETTHPEVIAAAVTEQPQVITESDVAVAQE 939 +V+ PV + + + A+ + +V V+E+ + + + E Sbjct: 865 IVAQPVEATNDSPWSQASAILAAKQDEVAAPAASETKVADEPVSEKAPTDVQPNASAVDE 924 Query: 940 VAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEV 999 V + A E AE ++ V ++P V E T AV Sbjct: 925 VEPPVAQAESIHDSPAMASEHAPVAEAIIESAPVESEPVEAVTEAEQPEATTADAV---- 980 Query: 1000 TVEHNHATAPMTRAPAPEYVPEAPRHSD 1027 AT + AP + PEA +D Sbjct: 981 ----TEATTQVETAPQEDVHPEAIATTD 1004 Score = 51.7 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 71/414 (17%), Positives = 119/414 (28%), Gaps = 58/414 (14%) Query: 682 RRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQ----KVRYEQSVAE 737 D + +A+ A + S + + P R R Q + R E + Sbjct: 575 GAGDKRVEAEVAAPRDPARKASSNRPPRAKDENRATPNRLPRAATQTSESEARLEDKRRD 634 Query: 738 EAVVAPVVEE--------TVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNR 789 E V E + + +P + A P A E + Sbjct: 635 EGKVEGTKPEGSSNRRRRSRSRKPAEGQRDAQVNTAASANQPAEAPAVTTDTAEGKGSAK 694 Query: 790 DNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIV 849 R R +S P A+ E + ++ P+ Sbjct: 695 APEKTTARQRE---------------------PRSSEPAVRPIAAHEQSLIDQQLKAPVA 733 Query: 850 RPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEV 909 P + + +++ + + A V P + A +A Q+A PQPE Sbjct: 734 SPSALPLNVAVKRDPAAALAPNAALGLLADD---VIVPALVAAAITPKAEAQIAAPQPED 790 Query: 910 VETTH-----PEVIAAAVTEQPQVITESDVA-VAQEVAEQAEPVVEPQEETADIEEVVET 963 + + E P T + V V E AEPV+ +EE + Sbjct: 791 TAANEVNVAPSAPMVESQAEAPTDTTIAAVTPVVAEPVSAAEPVIHTKEEMPSVAATESP 850 Query: 964 AEVVVAEPE-----VVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEY 1018 E PE +VAQP ++ + A + + + + P E Sbjct: 851 VETSTLIPEAIAEQIVAQPVEATNDSPWSQASAILAAKQDEVAAPAASETKVADEPVSEK 910 Query: 1019 VPEAPRHS----DWQRPTFAFEGKGAAGGHTATHHA-------SAAPARPQPVE 1061 P + + D P A A+ HA +AP +PVE Sbjct: 911 APTDVQPNASAVDEVEPPVAQAESIHDSPAMASEHAPVAEAIIESAPVESEPVE 964 >UniRef50_C8N8A8 Ribonuclease G and E n=19 Tax=Proteobacteria RepID=C8N8A8_9GAMM Length = 1302 Score = 693 bits (1787), Expect = 0.0, Method: Composition-based stats. Identities = 396/851 (46%), Positives = 500/851 (58%), Gaps = 73/851 (8%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 MLINATQQEELRVALVDGQ+LYDLDIE+ QKKANIYKGKITRIEPSLEAAFVDYGA+ Sbjct: 1 MLINATQQEELRVALVDGQQLYDLDIETLYSAQKKANIYKGKITRIEPSLEAAFVDYGAQ 60 Query: 64 RHGFLPLKEIAREYFPANYSAH-GRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISL 122 RHGFLP KEI +EY + +AH G+ KD++ GQEV+VQIDKEERGNKGAALTT+ISL Sbjct: 61 RHGFLPFKEIGKEYLTGSTTAHEGQLAFKDMIEVGQEVLVQIDKEERGNKGAALTTYISL 120 Query: 123 AGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQW 182 AG +LVLMPNNPRAGG+SRRI+GDDR EL+E L L++PE MG+IVRTAGVG++ E LQW Sbjct: 121 AGRFLVLMPNNPRAGGVSRRIQGDDRKELRETLDMLDVPENMGIIVRTAGVGRAQEELQW 180 Query: 183 DLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQ 242 DL F L+ WEAI + LI+QESN+IVRA RDYLR DIG+ILID+ +V + A Sbjct: 181 DLDFLLQLWEAISEEYRKAQPQRLIYQESNIIVRALRDYLRPDIGQILIDDERVYQQASD 240 Query: 243 HIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAI 302 + L P+ +K+KLY IPLF+ YQIE QIESA+QR V+LPSGG +VID TEAL +I Sbjct: 241 FM-TLVMPNNLNKLKLYQDNIPLFTRYQIEGQIESAYQRNVQLPSGGELVIDYTEALVSI 299 Query: 303 DINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENR 362 DINS++AT+GGDIEETA+ TNLEAADEIARQ+RLRDLGGLIVIDFIDM+ R+++ VENR Sbjct: 300 DINSSKATKGGDIEETAYQTNLEAADEIARQMRLRDLGGLIVIDFIDMSVSRNRKDVENR 359 Query: 363 LREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLS 422 L EA + DRAR+QI ISRFGLLE+SRQRL PS+ ESSH VCPRC G G++R +S++LS Sbjct: 360 LYEATKIDRARVQIGRISRFGLLELSRQRLRPSMDESSHRVCPRCKGQGSIRGIQSMALS 419 Query: 423 ILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETP 482 +LRLIEEEA+KE T+ + +PV IA+YLLNEKR+ + IE R + V V+VPN + TP Sbjct: 420 LLRLIEEEAMKERTRRITGELPVSIATYLLNEKRAVIRQIEQR-NKVEVVLVPNADLHTP 478 Query: 483 HYHVLRVRKGE----ETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVP 538 Y++ R+R E PT SY L HE S EE +P + A+ V Sbjct: 479 DYYIERLRDDELDEDTAPTPSYRLRTRHE------SHEESDVVAKPGEAVTEQAAVQGVV 532 Query: 539 PAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEET---------- 588 P APAP+ AP Q L+ F + ALF + Sbjct: 533 PR-----------APAPQVAPTV-----QKSGLAALFSKVVALFKENRDPASAVEETAKT 576 Query: 589 -----------------------KPTEQPAPKAEAKPERQQD-RRKPRQN-NRRDRNERR 623 +P + P AEAK E Q+ R+ PR N N +N+R+ Sbjct: 577 TAGDKRRERTAPARNRRERNERQEPVQPPRKTAEAKAESVQEPRQAPRNNENGNGKNQRQ 636 Query: 624 DTRSERTE---GSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERS 680 + + R E D E +++ + + + T +A ++ R Sbjct: 637 EEAARRYEEALQQDIVREEAPAATPRREKASRSALPKDDVNPTLEALLNPPEEINGRSVR 696 Query: 681 RRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAV 740 + R D + + QE + +L A Sbjct: 697 KGRPRDVHA----VRGQGKADYVPQERPLAPAEDELTAPGLVEELRDDAPEAAETAPAPK 752 Query: 741 VAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRR 800 AP + P EAP + L+ P A + D MP Sbjct: 753 KAPSFAKIKPLPPSDAEAPGLVS-LLDQPADAAPAPALLPTGKLREDAHYPLEMPATQAI 811 Query: 801 SP-RHLRVSGQ 810 +P R L GQ Sbjct: 812 NPLRQLAALGQ 822 >UniRef50_B5EL09 Ribonuclease, Rne/Rng family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EL09_ACIF5 Length = 782 Score = 689 bits (1777), Expect = 0.0, Method: Composition-based stats. Identities = 359/802 (44%), Positives = 459/802 (57%), Gaps = 24/802 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINAT EELRVALVDGQ+L DLDIE EQKK+NIYKG+ITR+EPSLEAAFVDY Sbjct: 1 MKRMLINATHAEELRVALVDGQKLLDLDIERAYREQKKSNIYKGRITRVEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEIAREYF GR I+D++REGQE+IVQ+DKEER +KGAALTTF+ Sbjct: 61 GAERHGFLPLKEIAREYF--QQQEQGRKRIQDLVREGQEIIVQVDKEERSSKGAALTTFV 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPRAGG+SRRIEG+DRT++++ L L++PE MG+I RTAG+G+ EAL Sbjct: 119 SLAGRYLVLMPNNPRAGGVSRRIEGEDRTQIRQHLQLLDIPENMGVIARTAGIGQELEAL 178 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q DL + + W+AI A R APFLI+QE NV+VRA RD+ +DIGE+LID A Sbjct: 179 QRDLEYLKQIWQAIVDTAAPRAAPFLIYQEGNVVVRALRDHFSEDIGEVLIDEEGAYNAA 238 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 Q + ++ P ++K Y ++PLFS YQIE QIESAF REVRL SGG+IVID TEAL Sbjct: 239 VQFMGSM-MPKMVHRLKYYDNDVPLFSRYQIEQQIESAFSREVRLESGGAIVIDHTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 A+D+NS RAT+G DI ETAF TNLEAA+EIARQ+RLRDLGGLIV+DFIDM +HQR VE Sbjct: 298 AVDVNSGRATKGQDIAETAFQTNLEAAEEIARQIRLRDLGGLIVVDFIDMESPKHQREVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N+L+EA++ DRAR+Q+ ISRFGL+EMSRQRL SL E+S CPRC+GTG +R E+ S Sbjct: 358 NKLKEALKLDRARVQLGRISRFGLMEMSRQRLGASLEEASSEPCPRCNGTGQIRGCEATS 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 + +LRL+ EE +K EV VPV +A YLLNEKR + +E + D R +++P +M Sbjct: 418 MHVLRLLYEECMKTGAAEVECQVPVDVAVYLLNEKRRQILELEAKTD-TRILVIPTPEMV 476 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPHY + R R P E ALP A RP + A + PP Sbjct: 477 TPHYQIQRTR---VEGGSGRTAPAPGGEGNALP-----ARPSRPTNESAALSPLTAPPPP 528 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 P +PKA P + G+L+R AL + + + AE Sbjct: 529 EVLPPLRTPPAPSSPKAKVPAKVVPPEEGILARLVRALVSRYVPV-DAATFLAETSGAEM 587 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 +Q R R R + + + ++ E+ + + Sbjct: 588 SASTEQASEISSDEQENSGEGRSGRRRRRGGRRARARRSTQGGENGAESSSADEEAPEGS 647 Query: 661 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR 720 TE+ + D P +D A +E + + P Sbjct: 648 YTTEEFQDNDLLAGP---------EDDSHALEELVYPGSVPAAADWHQMLVPATTRTPAA 698 Query: 721 KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ 780 N R +S+ E + V+E V A R E P PV + Sbjct: 699 DPTFQNDPAREVESLPAEEPASLTVQEPVKDTTRESLRMAVRQEP--TPEPVQGDLLAVE 756 Query: 781 QEENNADNRDNGGMPRRSRRSP 802 E+ + P Sbjct: 757 TMEHGGAVSVAVPGEAEQQSFP 778 >UniRef50_A9ADG1 Ribonuclease, Rne/Rng family n=89 Tax=Betaproteobacteria RepID=A9ADG1_BURM1 Length = 1111 Score = 685 bits (1768), Expect = 0.0, Method: Composition-based stats. Identities = 361/782 (46%), Positives = 477/782 (60%), Gaps = 16/782 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRML NATQQEELRVA+VDGQ+L D+DIE+ G EQ+K NIYKG +TRIEPSLEA FV+Y Sbjct: 58 MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY 117 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +RHGFLP KE+AR+YF I+D LREGQE+IVQ++KEERGNKGAALTTFI Sbjct: 118 GEDRHGFLPFKEVARQYFKDGVDMRSA-RIQDALREGQELIVQVEKEERGNKGAALTTFI 176 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPR GG+SRRIEGD+R EL+E +A L++P+GM +I RTAG+G+SAE L Sbjct: 177 SLAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEEL 236 Query: 181 QWDLSFRLKHWEAIKKAAESRPA--PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 QWDL++ L+ W AI+ A++S P LI+ ES++++RA RDY + DIGEILID ++ + Sbjct: 237 QWDLNYLLQLWRAIEAASQSGNPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYD 296 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 AR + + PD SK+K Y ++PLFS +QIE QIE+A+ R V LPSGG+IVID TEA Sbjct: 297 QARAFM-DIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEA 355 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 L AID+NSARAT+G DIEETA TNLEAADE+ARQLRLRDLGGLIVIDFIDM + QR Sbjct: 356 LVAIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQRE 415 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 VE RL++A++ DRAR+Q+ ISRFGL+E+SRQRL P+L E SH CPRC+GTG +RD ES Sbjct: 416 VEQRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTES 475 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 +L +LR+I+EEA+KENT +H VPV + ++LLNEKR +N IE+R V V++PN Sbjct: 476 SALQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRF-KVGIVLIPNKH 534 Query: 479 METPHYHVLRVRKGE---ETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMP 535 ++TPHY + R+R + + P S+ + + E A L SE +++R +P Sbjct: 535 LDTPHYKLERLRHDDARLDDPRASWKMAE--EAARELESETGYSKRAADVKPKQEAAVKG 592 Query: 536 DVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPA 595 P P P+ V PA APA A P+ F G LK LF P Sbjct: 593 ITPERPAPSPAPQRPVEPAAAPAPAPVAQPS-----GGFIGWLKGLFGMSPAPAPAPVAP 647 Query: 596 PKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRE 655 A+ + R R + R +R R+ G + + Q + RE Sbjct: 648 APAKEQAARPARERAEKTEQRGERGGDRNRNRRGGNGQQAQGGRDQVAAGRGQPQRQERE 707 Query: 656 SRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRP 715 ++ E E + ++ +R + + E + +E E R R Sbjct: 708 GKEAREPREGREGREGREGRENREAREGREGREGRAPREAREPRENREPREAR-EPRERA 766 Query: 716 VQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQ 775 QP + ++ + P T+ + P + LP Sbjct: 767 EQPEAVEAARGERQERGERRERGERRKPQHAATLETVNRGESHPEQDADKAAAALPGADV 826 Query: 776 TA 777 A Sbjct: 827 AA 828 >UniRef50_A6VXP7 Ribonuclease, Rne/Rng family n=3 Tax=Gammaproteobacteria RepID=A6VXP7_MARMS Length = 1071 Score = 679 bits (1753), Expect = 0.0, Method: Composition-based stats. Identities = 437/1062 (41%), Positives = 570/1062 (53%), Gaps = 55/1062 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M RMLINATQQEELRVALVDGQRLYDLDIES EQKK+NIYKG+ITRIEPSLEAAFVD+ Sbjct: 1 MIRMLINATQQEELRVALVDGQRLYDLDIESGSREQKKSNIYKGRITRIEPSLEAAFVDF 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GA+RHGFLPLKEI++ YF + GR NIKDVL EGQEVIVQ+DKEERGNKGAALTTF+ Sbjct: 61 GADRHGFLPLKEISKTYFSKKSNHEGRINIKDVLSEGQEVIVQVDKEERGNKGAALTTFV 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPRAGGISRRI+GDDR+ LKEA++ L PE GLIVRTAGVG+S E L Sbjct: 121 SLAGRYLVLMPNNPRAGGISRRIDGDDRSHLKEAMSGLNTPENGGLIVRTAGVGRSTEEL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDL + W +I KAA +PAPFLI+QESN+++RA RDYLR+DIGE+LID + A Sbjct: 181 QWDLDYLDTLWSSITKAASEKPAPFLIYQESNIVIRAIRDYLREDIGEVLIDEKSAYQDA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + + P F S+IK+YT PLF+ +QIE+QIE+AFQREVRLPSGGSIVID TEAL Sbjct: 241 INFVMQV-MPHFKSRIKMYTDSTPLFNRFQIETQIETAFQREVRLPSGGSIVIDPTEALV 299 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSARAT+GGDIEETA TNLEAADEIARQLRLRD+GGL+VIDFIDMTPVR+Q+ VE Sbjct: 300 SIDINSARATKGGDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMTPVRNQKEVE 359 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 R++ A+ DRAR+Q+ ISRFGLLEMSRQRL PSLGE+S VCPRC+G G +RD ESL+ Sbjct: 360 TRMKNALEADRARVQLGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGFIRDVESLA 419 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LS+LRLIEEE KE T ++ A++PV +A++LLNEKR+ + IE R + V ++VPN ME Sbjct: 420 LSVLRLIEEECSKERTAQIRAVLPVSVATFLLNEKRTNIAKIEKR-NNVHIILVPNPHME 478 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPH+ V R+R + + L E P E A +P A ++ PA Sbjct: 479 TPHFEVERIRDDSTVVSQNENSYTLVETPEQPPYEPRKANENV--RPQAAVTSIAPKAPA 536 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 P PAA A P A +P LL R AL G ++KP ++ K Sbjct: 537 PEHTAPAA--------ATPKVVKAQDKPSLLKRIITAL----FGETQSKPKQKTVSKTPP 584 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 Q DR + N N + + D+ +NR Q + + + Sbjct: 585 VAPSQNDRDTSSKPNGNRVNRNKRNVKHQNADRDDNNTAEKNRSTRQSRREQAESGTKGT 644 Query: 661 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR 720 + ++Q+ ++ K +Q K E V+E +++ + + Sbjct: 645 SNNRRNNRGNKQETQEPRVEKQEAAVKAAPRQPQK----EVPEVKERKRDRNDNRRRNGK 700 Query: 721 KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ 780 + + + + ++ A +VE AE E Q + Sbjct: 701 LKDEALEATKLQEQED-----AALVEAAQNAEVENHENG------------DEPQRRSRR 743 Query: 781 QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG 840 + ++ P+ + S + T + V +PE+ Sbjct: 744 SRRSRRPQKEENSAPQENVES-----------ESDETQSTVTAAAQTEEVKSTTPEVKQT 792 Query: 841 KVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPV 900 + + + +E E V V V A+E V E A Sbjct: 793 EAEAKSVDTTSEFSTKDEPEAVEAVEAVEAVEAVEAVEAVE--AVEAVEAEKVESTNAEQ 850 Query: 901 QVAEPQPEVVETTHPEVIAAAVTEQPQVITESD----VAVAQEVAEQAEPVVEPQEETAD 956 E + + E + + + ++ E+ +A + EQAE ++ TA+ Sbjct: 851 ATEETKEKSPEAKPAKPKMSVKAQMRKIEQETPEVASIATDETKVEQAEVELKTTTSTAE 910 Query: 957 IEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVE-PEVTVEHNHATAPMTRAPA 1015 I+ T E V E++ VA PEVT T A Sbjct: 911 IQTATPTEEPAVEASVTEEIKTEAPEKPTTVEIKPVAIEPTPEVTEATTDPVTSETVAVD 970 Query: 1016 PEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARP 1057 EA + G AT A+ P Sbjct: 971 SSETKEAEEEKVQNAARSSTRTPRRGRGKPATKQANTEAKAP 1012 >UniRef50_C8PW15 Ribonuclease E n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PW15_9GAMM Length = 1266 Score = 673 bits (1735), Expect = 0.0, Method: Composition-based stats. Identities = 364/1070 (34%), Positives = 521/1070 (48%), Gaps = 60/1070 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKR+LINAT EE+RVAL +G LYD D+E+ EQKKANIYKG +TR+EPSLEA FV+Y Sbjct: 1 MKRILINATHAEEIRVALCNGNHLYDFDLENRTREQKKANIYKGHVTRVEPSLEAVFVEY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G++R GFLP++EIA EY NIK +++EG E+IVQ++KEERGNKGAAL+T I Sbjct: 61 GSQRQGFLPIREIAPEYLAG--DPRSTTNIKQLIKEGDELIVQVEKEERGNKGAALSTLI 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNN R GGISR+I G R E+K+AL+ L LP+GM +I+RTAG+GK+ + L Sbjct: 119 SLAGRYLVLMPNNARGGGISRQISGKLRDEMKQALSELRLPKGMSVIIRTAGIGKTTDEL 178 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q DL L W+ I++ ++ P+P L+HQE+ V+ RA RDYLR DI EI +DN A Sbjct: 179 QQDLDHLLNIWKGIQQQSQKFPSPRLLHQEAGVVTRAVRDYLRDDITEIWVDNEYAYNEA 238 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 I A+ P ++K++ YT P+F+ + IE QIE+A+QREVRLPSGGSIVID TEAL Sbjct: 239 ANFIEAV-MPQQANKLRKYTDYEPMFARFGIEKQIETAYQREVRLPSGGSIVIDQTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINS++AT+G D+ ETAFNTNLEAADEIARQLRLRD+GGLIVIDFIDM HQ+ VE Sbjct: 298 SIDINSSKATKGADVSETAFNTNLEAADEIARQLRLRDMGGLIVIDFIDMATDDHQKQVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NRL+EA + DRARIQ + ISRFGLLEMSRQRL PSL E++ ++CPRC GTG +RD SL+ Sbjct: 358 NRLKEATKNDRARIQFAEISRFGLLEMSRQRLRPSLEEATGYLCPRCHGTGMIRDLRSLA 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSI+R IE+ AL+E EV A VP IA++LLNEKR + +E + G R I+P+ +E Sbjct: 418 LSIMRQIEQRALQERHGEVQAEVPTDIAAFLLNEKRETLVCLEQ-ESGTRITILPHAHLE 476 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEE-------------FAERKRPEQP 527 +P +++ G + + +E + Sbjct: 477 SPEFNITYNSDGFAPSSYERVAESQQQEYKDRGYDTSNWHTDDNEVSRVAPTGNHNAWSN 536 Query: 528 ALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEE 587 A P P+ A KAA P P + L LF+ ++ Sbjct: 537 ASNAANTTPSPATPSNKPQQTANNTTAAKAAVPQPVQPTATVPATSAVAWLSNLFAPTQQ 596 Query: 588 TKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQ 647 + T + + A + + + + S N E N Q Sbjct: 597 AQVTPHFSGQDAASAIESLVNTGAQSLGVQGQINHAALTASIPAVSANTSETSANPYQEA 656 Query: 648 QQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQET 707 Q + + R + +A + R + + + Q+ + + +T Sbjct: 657 SQQPSATAESSDKDAERRKRGNRKPKAKKPNRYQSETSEAEVSSQDTDSNKDKSNDASKT 716 Query: 708 EQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVK 767 + + +P ++ K R +++ VA V + T Sbjct: 717 AKTSELPKREPNSRRDSRGVKERRATLANDDSNVAAVNDVT------------------- 757 Query: 768 VPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMP 827 TA + + +R P ++V Q + + + Sbjct: 758 -----ATDTAVAPVDGRKNNQSKAEKPKGAKQRDPNSVQV--QVFKTEQQQPIAAVETTH 810 Query: 828 LTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVA---AAIEPVV 884 L++ + E+A +V P+ E+ E + V+ VA A P Sbjct: 811 LSLDASKGEIAEPEVQPIASATMPEPTTPEQAIETPVIPSSITVSNDEVAELSTASTPSK 870 Query: 885 SAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQA 944 + V A+ P V + + + +T+ V+Q + + Sbjct: 871 PSAEPATAQLAVTPSQGRAKNDPREVYKAYQAQFSPVASVVSTSVTKISGTVSQFINQYL 930 Query: 945 EPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHN 1004 + E + + ++ + + VVAE + N Sbjct: 931 DNAAEKMATNSVVSCFIQAIDAFNHQAATTPAKDNVVVAEQ----------QRFGQYFRN 980 Query: 1005 HATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAP 1054 + A ++ +Y S +QR GK A T T A P Sbjct: 981 YGYASLSAQNLEDYHTAILPASQFQRQA----GKTDAALPTVTKRAINDP 1026 >UniRef50_A5WCP3 RNAse E n=3 Tax=Proteobacteria RepID=A5WCP3_PSYWF Length = 1368 Score = 669 bits (1726), Expect = 0.0, Method: Composition-based stats. Identities = 367/1064 (34%), Positives = 530/1064 (49%), Gaps = 67/1064 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKR+LINAT EE+RVAL G LYD D+E+ EQKKANIYKG +TR+EPSLEA FV+Y Sbjct: 1 MKRILINATHNEEVRVALCKGNHLYDFDLENRTREQKKANIYKGHVTRVEPSLEAVFVEY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G++R GFLP++EIA EY N NI+ +++EG E+IVQ++KEERGNKGAAL+T++ Sbjct: 61 GSKRQGFLPVREIASEYLSGNPREE---NIRKLIKEGDELIVQVEKEERGNKGAALSTYV 117 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNP+ GGISR+I G R ++K L +L+LP+GM +IVRTAG+GK+ E L Sbjct: 118 SLAGRYLVLMPNNPKGGGISRQISGKLREDMKRMLGNLDLPKGMSVIVRTAGIGKTQEDL 177 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q DL+ L W AI+ + +P L+HQE+ V+ RA RDYLR DI EI IDN + A Sbjct: 178 QHDLNHLLNIWNAIQDQNKKYASPRLVHQEAGVVTRAVRDYLRDDITEIWIDNEEAFIEA 237 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 I A+ P K++ YT P+FS + +E QIE+A+QREVRLPSGGSIVID TEAL Sbjct: 238 ETFIKAV-MPTQIDKLRKYTDFEPMFSSFNVERQIETAYQREVRLPSGGSIVIDQTEALV 296 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSA++T+G D+ ETA++TNLEAADEIARQLRLRD+GGLIVIDFIDM +HQ+ VE Sbjct: 297 SIDINSAKSTKGADVAETAYHTNLEAADEIARQLRLRDMGGLIVIDFIDMNDSKHQKEVE 356 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 RL EA + DRAR+Q ISRFGL+EMSRQRL PSL ES+ ++CPRC G G +RD SLS Sbjct: 357 KRLVEATKYDRARVQFGEISRFGLMEMSRQRLRPSLEESTGYICPRCHGNGMIRDLRSLS 416 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSI+R IE+ ALKE EV A VP IA++LLNEKR ++ +E G R I+P+ +E Sbjct: 417 LSIMRQIEQTALKERHGEVQAEVPTDIAAFLLNEKRESLVYLEQ-DSGTRITILPHAHLE 475 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEF--AERKRPEQPALATFAMPDVP 538 +P++++ G + + +E L E ++ AE +RPEQ P Sbjct: 476 SPNFNIHFNHHGFAPASYERVTDTQQQETSGLGYEVDWQTAESERPEQ-------QPVRQ 528 Query: 539 PAPTPAEPAAPVVAPAPKAAPATP-----AAPAQPGLLS------RFFGALKALFSGGEE 587 P T + +A PA A ATP A P QP L LF+ + Sbjct: 529 PRKTAPQASADTSKPAEAAKAATPVANTAAKPQQPAEAQVEQAKPAAVAWLSNLFAPTPQ 588 Query: 588 TKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQ 647 + + + A+ + + + S + A Sbjct: 589 AQMSATVSSADAAQAIEAIVNTGAQSRG--AFGQVSAAPAAAPVASATVAAKPASAPTAS 646 Query: 648 QQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQET 707 +Q ++ + + + + +RS+ N + Q +++ K+ + ++S Sbjct: 647 EQANSADDTETDNDKDRRRSRNNRSRNKYDKRSKPDNRRRSQDKEDKKSADTADKSDNRQ 706 Query: 708 EQEERVRPVQPRRKQ-----------RQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQ 756 E+ P+R+ R ++ S E++ +A+ Sbjct: 707 VAEQEPNKELPKREPNSKRESRGAIERGDTKQPNKASSDNRSDRNQKTDEKSRSADKNGS 766 Query: 757 EAPA--PRTELVKVPLPVVAQTAPEQQE---------ENNADNRDNGGMPRRSRRSPRHL 805 + + P AQ ++ E +++ + P + SP + Sbjct: 767 RSNSERPVDPNEVNLRVTEAQNTLKKSEVVHICLDDAKSSQKSAQAQSKPEVQQASPNNR 826 Query: 806 RVSGQRRRRYRDERYPTQSP--------MPLTVACASPELASGKVWIRYPIVRPQDVQVE 857 V+ Q+ + + +++ P A A+ + + P +D + Sbjct: 827 AVTRQQSTQAEPQADNSKAAKSEASRDHKPSDDASAAQPNTAAVTEVAEPASNMKDGAAQ 886 Query: 858 EQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEV 917 ++Q+ V V+ EP P + + P + E Sbjct: 887 GDQKQKADTKTESVVAPSVSKDAEPKADQPAKVQASTAQSEPAEAV-IDTEATPAKAAAN 945 Query: 918 IAAAVTEQPQVITESDVAVAQEVAEQAEPVV-EPQEETADIEEVVETAEVVVAEP----- 971 AA P+ T V +++ A + + + +E A+ + +P Sbjct: 946 NAAHAARSPEEATAQPVVASEDQAPETASLSFDAKELFANRYVAAQKYGQASNDPRVIKA 1005 Query: 972 ---EVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTR 1012 AAP E H H P R Sbjct: 1006 SLEAQAQSFAAPEADEPELLAPMATITGSVGQFIHTHLAQPRMR 1049 >UniRef50_B5JUW5 Ribonuclease E n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUW5_9GAMM Length = 914 Score = 668 bits (1723), Expect = 0.0, Method: Composition-based stats. Identities = 404/996 (40%), Positives = 546/996 (54%), Gaps = 89/996 (8%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EELRVA+VDGQ+L +LDIE P EQKKANIYKG ITR+EPSLEAAFVD+ Sbjct: 1 MKRMLINATQPEELRVAIVDGQKLINLDIEVPSREQKKANIYKGVITRVEPSLEAAFVDF 60 Query: 61 GAERHGFLPLKEIAREYFPA--NYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 GAERHGFLP KEI R Y P + +GRPN+KD ++EGQE+I+Q++KEERGNKGAA+TT Sbjct: 61 GAERHGFLPFKEINRRYLPDDIETNDNGRPNVKDGIKEGQELIIQVEKEERGNKGAAITT 120 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAE 178 ISLAG YLV MP++PR+GG+SRRIEG++R +++EA+ + +P+G G+IVRTAGVG+++E Sbjct: 121 NISLAGRYLVAMPHSPRSGGVSRRIEGEERAQVREAMQDMTIPDGTGVIVRTAGVGRTSE 180 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 LQWD + + WEAI+KAAESR PFLI+QESNVI+RA RD+ R DIGEILID + + Sbjct: 181 ELQWDFDYLAQIWEAIEKAAESRQGPFLIYQESNVIIRALRDHYRDDIGEILIDEAGIHK 240 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 A ++ L + K+K Y +PLF+ YQIESQIESAFQREVRLPSGGSIV+D TEA Sbjct: 241 QANDFMS-LAMQNDLRKLKFYEDSVPLFNRYQIESQIESAFQREVRLPSGGSIVVDPTEA 299 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 LT+IDINSARAT+G +I+ETA NTNLEAADEIARQLRLRDLGGL+VIDFIDM +HQR Sbjct: 300 LTSIDINSARATKGSNIDETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMGSNKHQRE 359 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 VENRLR+AVR DRAR+Q + IS+FGLLEMSRQRL PSLGESS VCPRC G GT+R ES Sbjct: 360 VENRLRDAVRIDRARVQTNRISKFGLLEMSRQRLRPSLGESSKEVCPRCEGHGTIRSIES 419 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 L+L++LR++EEEALKENT V A +PV +A+++LNEKR V +E R + + +IVPN Sbjct: 420 LALAVLRIMEEEALKENTGRVIAQLPVDVATFMLNEKRQQVAELENR-NSIDLLIVPNKA 478 Query: 479 METPHYHVLRVRKGEET---PTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMP 535 +ETPHY V RVR ++ SY + EE+ E K P + P Sbjct: 479 LETPHYVVERVRLSDKEANAKRTSYEQATVAEESYV----PELRSDKTPVEEPAVQTVAP 534 Query: 536 DVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPA 595 PP V PK A P GLL+R L G ++ +P++ Sbjct: 535 VAPPQ----------VEQKPKKKEAAPL-----GLLARLIQWL----FGNQDKRPSKGQK 575 Query: 596 PKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENR-RNRRQAQQQTAETR 654 K + R R R +RN ++ + + R +NR RQ + ++ + Sbjct: 576 GKQQRNNNRGGGRNNNRGGRNNNRNRNNRNQNNNDKKNKQRSDNRSGGGRQQNKGKSDNK 635 Query: 655 ESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVR 714 +Q++ + D+ + + RN+ + + + + R Sbjct: 636 NDNRQSKGNNNSDNGDQNKDNNSQNGNNRNNRGSRGGRGRGGRGRGGNRNNDNRNQNSNR 695 Query: 715 PVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVA 774 + + + + + +EP Q+ Sbjct: 696 NADNKEQ-----------NNGNDANNGPSKNSQARNSEPKNQDP---------------- 728 Query: 775 QTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACAS 834 ++ +N A D S R P R+ R Q+ + + + Sbjct: 729 -----KKSDNRAQQSDKNSNETNSSRKP---------RQNDRSGSSDHQASISTRHSKVT 774 Query: 835 PELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAG 894 + P V Q + E+ R ++ Q VT V A E ++ A Sbjct: 775 KD--------DKPSVAKQPQEAEQMRSDQKSISQTGVTNTSVLAYAEKKKASQQQTAKAE 826 Query: 895 VVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEET 954 + + + A + PQ ++ + ++ E P EP+ T Sbjct: 827 QANSGDSANAKPADAKSAPPSKSEKPAAQDTPQAASKPE---DKKPVESTTPQSEPKPST 883 Query: 955 ADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVE 990 D + T E + P E A + Sbjct: 884 QDKQAQSPT------ESAEPKKDQTPPKGEEKAPSK 913 >UniRef50_A4A8E4 Ribonuclease E n=5 Tax=unclassified Gammaproteobacteria RepID=A4A8E4_9GAMM Length = 1003 Score = 665 bits (1716), Expect = 0.0, Method: Composition-based stats. Identities = 412/1036 (39%), Positives = 569/1036 (54%), Gaps = 76/1036 (7%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK+MLINAT EE+RVALVDGQ+LYDLDIE+ QKKANIY GKITR+EPSLEAAFVD+ Sbjct: 1 MKKMLINATHAEEMRVALVDGQKLYDLDIENRTRLQKKANIYVGKITRVEPSLEAAFVDF 60 Query: 61 GAERHGFLPLKEIAREYFPAN-YSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 GAERHGFL +KEIAREYF N G+ +I+DV++EG +IVQ+DKEERGNKGAALTTF Sbjct: 61 GAERHGFLSVKEIAREYFYRNPKDVDGKFSIRDVVKEGTRLIVQVDKEERGNKGAALTTF 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ISL G Y+VLMPNNPRAGGISRRIEGDDR EL+EAL++L++P+GMG+I+RTAGVG+SAE Sbjct: 121 ISLPGRYMVLMPNNPRAGGISRRIEGDDRAELREALSALDIPDGMGVIIRTAGVGRSAEE 180 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 LQWDL++ L+ WEA+ KA E +P L++QESNVI+RA RDYLR D+ ++LID+P + Sbjct: 181 LQWDLNYLLQLWEAVSKAGEENRSPVLLYQESNVIIRAVRDYLRDDVDQVLIDSPDAFKQ 240 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 A ++ + P + +IKLY IPLF+ +QIESQIE+AFQREVRLPSGGSIVID TEAL Sbjct: 241 AMDFVSMV-MPKYQQRIKLYEDNIPLFNRFQIESQIETAFQREVRLPSGGSIVIDPTEAL 299 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +IDINSARAT+G +IE TA TNLEAADE+ARQLRLRD+GGLIVIDFIDM ++QRAV Sbjct: 300 VSIDINSARATKGANIEATALQTNLEAADEVARQLRLRDMGGLIVIDFIDMLAAKNQRAV 359 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 ENR+R+A+ DRAR+Q+ ISRFGLLEMSRQRL PSLGE+S +CPRC+G G++RD +SL Sbjct: 360 ENRMRDALAIDRARVQVGRISRFGLLEMSRQRLRPSLGETSAIICPRCTGQGSIRDTKSL 419 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 SLSILRL+EEEA+K+ T EV AIVPV +A+YLLNEKR A++ +E+ VR +++PN + Sbjct: 420 SLSILRLLEEEAIKDRTAEVRAIVPVDVAAYLLNEKRVALSEVES-LTRVRVLVIPNPNL 478 Query: 480 ETPHYHVLRVRKGEE--TPTLSYMLPKLHEEAMALPSE------EEFAERKRPEQPALAT 531 ETPH+ V R+R E SY + +A ++ + A +R A Sbjct: 479 ETPHFEVTRLRDDEVEGDQQTSYKVEIAVPDADSISDSHDHSLPTQEAVVQRIAPTAAPA 538 Query: 532 FAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFF---------------- 575 A PA + + A A AT A A+PGL R + Sbjct: 539 PTAVADSEATEPASVSGAATSAATTAVAATAAVAAKPGLAQRLWVSFFGDPNANAEEAGA 598 Query: 576 ---GALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTR------ 626 GA+ S E+ E PK R+ + + + N D ++ D++ Sbjct: 599 EEAGAVTTSDSNTSESADAEGDRPKRTRGRRRRGGQGRNQNRNAEDTDQNADSKDSEAST 658 Query: 627 --SERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRN 684 +E GS + E+ ++ R + + + E + E S + Sbjct: 659 DAAEARTGSASDEDGSEKPEDGTRRRRRRRSRGGRRSGPDGQESTGESGVTQSEDSSDSD 718 Query: 685 DDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPV 744 + A ++ + + +E + R RP RR + + ++ ++ A Sbjct: 719 EAAAVASEDDNGESSDRDQDVASEHKPRKRPSNQRRGEPRRRRRKPVTETAEAVAEEQTD 778 Query: 745 VEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRH 804 T E + + P + V +E+ D N S Sbjct: 779 QASTSVVESEAESSVEPVEAIEAVTEVEAVAETASVVDESAVDASLNDAEASNS------ 832 Query: 805 LRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEE 864 A+ E +G+ V + V E+ + Sbjct: 833 --------------------------VAAADEALTGEAATATDTVEAAETPVAEEATKPA 866 Query: 865 VHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTE 924 + + ++AA + + E+ V+ +V AA T Sbjct: 867 SAGSSIEAAMGLSAATDGQTAIVEAEDSPEAVDDVSEVVADATADTAQAPAPAEPAAATL 926 Query: 925 QPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAE 984 QV ++ A + + E+ V +P+ + ++E+ +V ++ AAP V Sbjct: 927 --QVDAKAANAPGEGLTEEGRAVNDPRVSPSPVQELHIETGQIVLF----SETAAPAVEA 980 Query: 985 VAAEVETVAAVEPEVT 1000 +V + Sbjct: 981 PDRQVPRASNDPRGPK 996 >UniRef50_B0TYI3 Ribonuclease E n=18 Tax=Francisella RepID=B0TYI3_FRAP2 Length = 890 Score = 659 bits (1700), Expect = 0.0, Method: Composition-based stats. Identities = 308/891 (34%), Positives = 491/891 (55%), Gaps = 29/891 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK++LIN+ EE R+A +D +L DLDIE+ EQKKANIYKG I+RIEPSL A FV+Y Sbjct: 1 MKKILINSKSSEETRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +++GFLP KE++ Y NI +L EGQE+IVQIDKEERG+KGAALTTFI Sbjct: 61 GEDKNGFLPFKEVSEYYLK---DVPNGENIAHLLSEGQELIVQIDKEERGDKGAALTTFI 117 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LAGSY+VL+PNNP GGISRR+EG+DR +LK+ L L +P+ M +I RTA V S E L Sbjct: 118 TLAGSYMVLLPNNPDGGGISRRVEGEDREKLKKYLKDLNIPKNMSVIARTACVECSFEEL 177 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 + D ++ W++I KA P L+H+ES++IVR RD+L++D+ EI++D+ + E Sbjct: 178 KHDFDTLVELWDSIFKAYHKIKKPDLLHKESDIIVRTVRDHLKEDVKEIIVDSKECYEDV 237 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++ + L + +K+KLY E+P+F+ + I+ QIE+A++RE+RLPSGGSIVID+TEAL Sbjct: 238 KRQLGLLRQSFDINKVKLYNEELPIFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AID+NS+RA + D+E TAF TNLEAA+E+ARQLR+RDLGGL+++DFIDM+ +++ VE Sbjct: 298 AIDVNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 +L EA++QD+ARIQ+S IS+ GL+E+SRQRLS S+ ES CPRC G G ++ ++ + Sbjct: 358 EKLMEALQQDKARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCDGHGFIKTTQATA 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 L+ILR I EA+KE+T E+ VPV IA+Y+LNEKR ++ IE R V+ +++PN ME Sbjct: 418 LTILRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVEIE-RISEVKVMLIPNFNME 476 Query: 481 TPHYHVLRV--RKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPD-- 536 +P + + R+ + T S ++ ++ E A +K+ L+ D Sbjct: 477 SPKFQMQRIWGTSYKSNRTSSDLIEDVY------NVEIPKAGKKKVAAVELSKPISEDQS 530 Query: 537 VPPAPTPAEPAAPVVAPAPKAAPATPAA--PAQPGLLSRFFGALKALFSGGEETKPTEQP 594 V P + T P + G S+ L +G E E Sbjct: 531 VSPKEDNKLENKNIETTVQNNTNKTSEKQEPKKKGFFSKLLDKL----TGSNEVIAVENK 586 Query: 595 APKAEA---KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTA 651 P+ + K + Q+ ++ ++D N+R D ++ + SDN+ N+ + Q Q++ Sbjct: 587 KPQNKQYNNKDKAQKPQKSQDNRPQKDINQRDDRKANNNDRSDNKNNNKGQKPQV-QKSQ 645 Query: 652 ETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEE 711 + R+ R + ++ + + + S + D K + +++ N+ + +E Sbjct: 646 DNRQERDNNQRNDRKNNDNRNDRNKNKLSSDKFDKKSNNRGSSRSNNLNLNNAEEVVDIT 705 Query: 712 RVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLP 771 +++ ++ +KV + +V+ V E + E K Sbjct: 706 QLKYQNQTAEKTDNIKKVISKNPEEFVSVMVKDVLENYNSLKDDGATKVATEEKAKTSKY 765 Query: 772 VVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVA 831 + T + + R++ ++ + ++ + + + + Sbjct: 766 LKFDTVLV-----DKEITLLKEAARQAEKAKQAEKIQNTEVEDSNNIHAEIKETIEIVDE 820 Query: 832 CASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEP 882 E S K + + V++++ + + + T +P Sbjct: 821 VVVKEEQSKKAKLEKDDKTSEQNSVKKEKPKTTKNNKKEKTVEKANKQNQP 871 >UniRef50_C1DR24 Ribonuclease E n=27 Tax=Gammaproteobacteria RepID=C1DR24_AZOVD Length = 1139 Score = 655 bits (1689), Expect = 0.0, Method: Composition-based stats. Identities = 460/1075 (42%), Positives = 587/1075 (54%), Gaps = 66/1075 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EELRVALVDGQRLYDLDIES EQKKANIYKG+ITR+EPSLEAAFVD+ Sbjct: 1 MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDF 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEI+REYF S GR NIKDVL EGQEVIVQ++KEERGNKGAALTTFI Sbjct: 61 GAERHGFLPLKEISREYFKK--SPEGRINIKDVLSEGQEVIVQVEKEERGNKGAALTTFI 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPRAGGISRRIEG++R EL+EAL L++P MGLIVRTAG+G+S+E L Sbjct: 119 SLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLDVPADMGLIVRTAGLGRSSEEL 178 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDL + ++ W AIK+A+ R PFLI+QESNVI+RA RDYLRQDIGE+LID+ + E A Sbjct: 179 QWDLDYLVQLWTAIKEASLDRSPPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEA 238 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 I + P ++SKIKLY +PLF+ +QIESQIE+AFQREV+LPSGGSIVID TEAL Sbjct: 239 LSFIRQV-MPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSARAT+GGDIEETA TNLEAA+EIARQLRLRD+GGLIVIDFIDMTP ++QRAVE Sbjct: 298 SIDINSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 +++REA+ DRAR+QI ISRFGLLEMSRQRL PSLGE+S VCPRCSG G +RD ESLS Sbjct: 358 DKMREALEADRARVQIGRISRFGLLEMSRQRLRPSLGETSGIVCPRCSGQGIIRDVESLS 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 L+ILRLIEEEALK+ T EV A VP+P+A++LLNEKR+++ IE R VR VI+P+D ME Sbjct: 418 LAILRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTR-VRIVILPSDHME 476 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPH+ V R+R + ++ + ++ A+ T Sbjct: 477 TPHFEVQRLRDDSPEVQSAQSSYEMTPAEVEEVQLVSSTRTLVRQEAAVKTAP------- 529 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 P PV A P A A P + L +L +LF+G E KP E Sbjct: 530 --PRNALVPVPAEIPAAPAAAPHPALELNLFKGLVKSLVSLFAGKEIAKPVVAERLVEER 587 Query: 601 -----KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRE 655 + R ++ R+ +R R+E R E + + REE + ++ E R Sbjct: 588 LTRSSEERRSSRQQNRRRESRHGRDEERSRPREERQLREVREERVPRPAREERPAREERH 647 Query: 656 SRQ--------------------QAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAK 695 + +A E + PR R RR R+ ++ Sbjct: 648 PSEFVEPREPRESRRERPPREERAPREERQAVETMEPREPREPRETRRERPPREERRREL 707 Query: 696 ALNVEEQSVQETEQEERV-----RPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVA 750 ++ Q +QE+ +EER + R +++ ++ + E V P E Sbjct: 708 REPLDIQEIQESPREERTVRPPREELPQREERQPHEERPVVNEPKIPEEQVLPHEEIQEE 767 Query: 751 AEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQ 810 E R + + + Q ++ + + + Sbjct: 768 EAEASGEERPRRRSRGQRRRSNRRERQRDGQGSEIEGVEEDEAAAVAAESTAATVSAVPA 827 Query: 811 RRRRYRDERYPTQSPMP------------LTVACASPELASGKVWIRYPIVRPQDVQV-- 856 + E T SP TVA A+P + V I PI++P+ VQ Sbjct: 828 QADEATAEASTTASPPSGQPAVEETQPAIETVAIAAPVAETAPVEIPQPILQPEQVQPAG 887 Query: 857 --EEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTH 914 E E E P A EP V A P +V + E E Sbjct: 888 AEEPVAEPSEALQVPAQPVQEPPATTEPSAEVEVPRSTARAANDPREVRRRKREAAEAEA 947 Query: 915 PEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVV 974 A + I E+ A + P + E E E+ + +P Sbjct: 948 KRAAEATKAAEAAKIAEASAIAAAAAVTETRAEAGPVPVASTPEAPEERIEIPLEQPRTA 1007 Query: 975 AQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTR-------APAPEYVPEA 1022 ++P+ + V E V+ + AP A A E E Sbjct: 1008 SEPSPASMESVELPSEQVSPEPEAFSTVAEPVEAPFELIQPEVPAAVAAEEPIET 1062 >UniRef50_B3T2A0 Putative S1 RNA-binding domain protein n=2 Tax=prokaryotic environmental samples RepID=B3T2A0_9ZZZZ Length = 776 Score = 651 bits (1678), Expect = 0.0, Method: Composition-based stats. Identities = 303/733 (41%), Positives = 449/733 (61%), Gaps = 12/733 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ+EELRVA+VDGQ+LYDLDIE EQKK NIYK KI+RIEPSL+A FVD+ Sbjct: 22 MKRMLINATQEEELRVAMVDGQKLYDLDIEIKSREQKKNNIYKAKISRIEPSLDAIFVDF 81 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G+ R+GFLP +E++REY+ + + +IK +L EGQ+++VQ+ KEERG KGAALTTFI Sbjct: 82 GSARNGFLPFREVSREYYLSEPIPGEKLDIKKLLEEGQDIVVQVSKEERGTKGAALTTFI 141 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG ++VLMPN +AGG+SR+I G DR ++ ++L++L +P+ GLI+RTAG+G+S L Sbjct: 142 SLAGRFIVLMPNKAKAGGVSRKIMGQDREQILDSLSNLGVPKEAGLIIRTAGLGRSDIEL 201 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 +WDL L W +IKK A + AP LI +E N+IVRA RD+L +I EI++D+ + A Sbjct: 202 EWDLKHLLGIWNSIKKMAVNVEAPALIFKEDNLIVRAMRDHLNDEISEIIVDDENTFKDA 261 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++++ + P+ K+ Y PLF+ +QIE QIESA+ +V LPSGGS+VID TEAL Sbjct: 262 KKYLKQVT-PNNLKKLLYYKETTPLFTKFQIEHQIESAYSNKVILPSGGSVVIDYTEALV 320 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINS ++T+ IE TA TNLEA DEI RQ RLRDLGGL+VIDFIDM R+Q+ VE Sbjct: 321 SIDINSGKSTKQSGIESTALKTNLEAVDEITRQCRLRDLGGLLVIDFIDMRQHRNQKQVE 380 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N L+ AV+ DRA+I + HIS+FGLLEMSRQRL PSLG+S++ +C CSG G +R ESL+ Sbjct: 381 NALKNAVKSDRAKISLGHISKFGLLEMSRQRLRPSLGDSAYRICENCSGMGRIRSTESLA 440 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 L++LRL+EEEA KENT V A +P A+YLLNEKR + IE R + V +++ + ++ Sbjct: 441 LAVLRLVEEEARKENTASVIADIPSDAATYLLNEKRQWIKDIEQR-ESVHIILIADPELS 499 Query: 481 TPHYHVLRVRKGE----ETPTLSYMLPKLHEEAMA-LPSEEEFAERKRPEQPALATFAMP 535 + ++ + R+RK E E SY L K ++ A L + ++ R P T Sbjct: 500 SVNFSIKRLRKDEANLAEYKQASYKLAKTIKQDNASLNPISQAMDKSRNLNPKPVTAWDI 559 Query: 536 DVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPA 595 D P + + +P +R G + K T + Sbjct: 560 DDVQTPNLIDRFMFWLENKQNNKVKANQGKNKPRSKTR---KSTTGVGGNKRKKSTNKRT 616 Query: 596 PKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRE 655 +++ ++K + + ++ + E + RE ++ ++ + RE Sbjct: 617 TPKRRSVKQESPQKKTAKKGPKQGAAKQGPKREAAKQGPKREAAKQGPKREAAKQGPKRE 676 Query: 656 SRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRP 715 + +Q + + +++A ++ +++ K+ +Q+A +++S + + + Sbjct: 677 AAKQGPKRDAVKKGPKREAAKQ--GPKQDAAKKGPKQDAVKKGPKKKSEKTRSSKGKSPN 734 Query: 716 VQPRRKQRQLNQK 728 R K ++ +K Sbjct: 735 TTQRIKDQESKEK 747 >UniRef50_A8PMW2 Ribonuclease E (RNase E) n=1 Tax=Rickettsiella grylli RepID=A8PMW2_9COXI Length = 778 Score = 647 bits (1668), Expect = 0.0, Method: Composition-based stats. Identities = 330/811 (40%), Positives = 448/811 (55%), Gaps = 54/811 (6%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 R+LINA Q E+RVAL++ +L DLD+E G EQKK+NIYKGKI+RIE SLEAAF+ YG Sbjct: 6 NRILINANQPGEIRVALLEANKLSDLDMEYTGQEQKKSNIYKGKISRIEQSLEAAFISYG 65 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFIS 121 AERHGFLP KEIA Y + +IK L+ GQE++VQI+KEERG+KGAALTT+I+ Sbjct: 66 AERHGFLPFKEIAPSYLKG--KNYDLQSIKHSLKVGQELMVQIEKEERGDKGAALTTYIT 123 Query: 122 LAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASL----ELPEGMGLIVRTAGVGKSA 177 L GSYLVLMPNNP AGGISRRIEGD+R E+++ + L EL + MGLI+RTAGVG+ Sbjct: 124 LPGSYLVLMPNNPGAGGISRRIEGDERREMQDLMHDLIEQTELSKNMGLILRTAGVGREF 183 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 L+ DL+ ++ W AI+KA RPAPFLI QE ++I R+ RDYLR+DI EI++D+ K+ Sbjct: 184 SELKNDLNLLIQQWNAIQKAYHERPAPFLIFQEGDLITRSVRDYLRRDIDEIIVDDKKIH 243 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 E +Q+I + RPDF S+I LY IPLF ++ IE +ESAF+R++ LPSG +IVID TE Sbjct: 244 EKIKQYIEQI-RPDFVSRISLYQNHIPLFMYFDIEEAVESAFKRKIELPSGATIVIDRTE 302 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 AL +IDINS R+T+ DIEETA TNLEAA EIA QLR+RDLGGLIVIDFIDM +QR Sbjct: 303 ALVSIDINSGRSTKNEDIEETAVATNLEAAKEIAHQLRVRDLGGLIVIDFIDMNSEENQR 362 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 VEN R AV++DRARIQI IS FGLLEMSRQRL SLG+++ +C RC+G GTVR E Sbjct: 363 KVENCFRLAVKKDRARIQIGRISTFGLLEMSRQRLRHSLGKANETLCSRCNGQGTVRTIE 422 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 S +L +LR IE+E LK++TQ + +PV IA+YL NEKR A+ IE + + V +++PN Sbjct: 423 SFALFLLRSIEKETLKKSTQHIRVELPVDIATYLFNEKRLALQHIEHQYN-VNLLLIPNP 481 Query: 478 QMETPHYHVLRVRKGEETPT----LSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFA 533 ++P Y + K T ML K H E+ L + P L Sbjct: 482 YWQSPQYKITSFSKTNNLKTNDAASYQMLDKSHLESSLLHHSPSAKVVEIPAVKPLTFIN 541 Query: 534 MPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQ 593 T + + + FG +K + + +K Sbjct: 542 -----------------------NKNKTVGLLGRLLGMLKDFGKIKTDLNKKQPSKNKIT 578 Query: 594 PAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAET 653 EA R ++N RRD + + S E++ + Sbjct: 579 TPYSHEAHKYTSGRRYSKTRHNHNRVRHRRDEKEKLNNDSGGNEQHASSHSFKSSHHRYN 638 Query: 654 RESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERV 713 R Q+ E + ++ +R +Q+ K + + +R+ Sbjct: 639 RYPTQRYESPSAVKPTPAITTEKKSSIHKRKQPLSTKKQDNK--------INHQQSPQRL 690 Query: 714 RPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVV 773 + Q V +++ P EE +++PI Q + Sbjct: 691 EKSIVSSPDLNSRKTAASSQHVVKKST--PAFEEKGSSDPIAQ---------AVISHSNT 739 Query: 774 AQTAPEQQEENNADNRDNGGMPRRSRRSPRH 804 A + + R GG P+ R+ H Sbjct: 740 ALSTRSSTNSPRRNTRRYGGEPKLRHRAYSH 770 >UniRef50_B0VED2 Ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation n=16 Tax=Acinetobacter RepID=B0VED2_ACIBY Length = 1110 Score = 638 bits (1645), Expect = 0.0, Method: Composition-based stats. Identities = 379/1046 (36%), Positives = 522/1046 (49%), Gaps = 41/1046 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINAT EE+RVAL+ G RLYD D+E+ EQKK+NIYKG +TR+EPSLEA FV+Y Sbjct: 1 MKRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GA R GFL ++EIA YF A NI++++ EG E++VQ++KEERGNKGAAL+TFI Sbjct: 61 GAGRQGFLSMREIANSYFQA--DPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFI 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNP+ GGISR+I G R ELKE LASL +P GM +IVRTAG+G++ E L Sbjct: 119 SLAGRYLVLMPNNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEEL 178 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q DL L W I+ A S P+P L+HQE+ V+ RA RDYLR D+ EILID+ + A Sbjct: 179 QLDLQHLLDLWAQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEA 238 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + A+ P K+K YT PLF+H+ IESQI++A++REV+LPSGGSIVID TEAL Sbjct: 239 YNFVKAV-MPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSA++TRG D+EETA NTNLEAA+EIARQLRLRD+GGL+VIDFIDMT R+QR VE Sbjct: 298 SIDINSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 +LREA + DRARIQ +SRFGL+EMSRQRL PSL E++ +VCPRC GTG VRD SLS Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLS 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSI+R +EE AL+E EV VPV IA++LLNEKR ++ +E GVR ++P+ +E Sbjct: 418 LSIMRKVEEIALRERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQ-TSGVRVTVLPHPHLE 476 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPHY + G + E E+ + A T A Sbjct: 477 TPHYEIAYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHAHVTATASTHAAA 536 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 A A VA A+P A + + + + S EQ Sbjct: 537 QKKANHATQPVAQPSAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGAV 596 Query: 601 KPERQQDRRKPRQNNRRDRNER----RDTRSERTEGSDNREENRRNRRQAQQQTAETRES 656 + P + ++ ++++ +++ + + +E Sbjct: 597 SRGQFGQVAVPAVAEVAPVQSNNAYISQSPVKQDVREHVEKDDKSQQQRQNNKKRKHKEQ 656 Query: 657 RQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQET----EQEER 712 R+Q + + + ++ + R +R ++Q +Q+ + + VQ T + +R Sbjct: 657 REQHHQSHEQQHQVHEEVVQLSRQEQRELKRQQKRQQQQDQQHQNNDVQHTENAVPRRDR 716 Query: 713 VRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETV--------------------AAE 752 +P R R + V E V ++ V +E Sbjct: 717 NNQQRPNRPNRHRDPSVLNENQNTLVVVDEKQIKVDVIDAPKHDVMNTALIINVDQGQSE 776 Query: 753 PIVQEAPAPRTELVKVPLPVVAQT---APEQQEENNADNRDNGGMPRRSRRSPRHLRVSG 809 + E V+ VAQ AP E+ P + P+ R S Sbjct: 777 IVALTPERRHVERVETTSTEVAQEPTPAPVVAEKAAVVETKEEAQPSQEAAQPQIKRASN 836 Query: 810 QRRRRYRDERY--PTQSPMPLTVACASPELASGKV--WIRYPIVRPQDVQVEEQREQEEV 865 R R R +R ++ P P LA + IR+ V +E+ Sbjct: 837 DPRMRRRQQREAKHAKAATPSIAPSQIPTLAQHTIGSLIRHVYGEDCTVLIEQFGLVPTF 896 Query: 866 HVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPE--VIAAAVT 923 + A+ + V+A E+ +A + +P E A Sbjct: 897 NRALQKFAEQYASTLVVEVTAETEEKKPVTRDAELPSHKPAEEAEPAPVLPLTPPQAPAP 956 Query: 924 EQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVA 983 E + E V + ++ AE VA P Q Sbjct: 957 RVANDPRERRRLAKLAAEQAFEQVKQQHSAQEEVATPAPVAEETVAAPTAETQATVEPAQ 1016 Query: 984 EVAAEVETVAAVEPEVTVEHNHATAP 1009 + ++ V+PE AT Sbjct: 1017 QPLELNQSTEVVQPEAAPAEEKATEE 1042 >UniRef50_Q0F3G3 Ribonucleases G and E n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G3_9PROT Length = 727 Score = 636 bits (1641), Expect = e-180, Method: Composition-based stats. Identities = 271/677 (40%), Positives = 381/677 (56%), Gaps = 41/677 (6%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 MLINA+ EE RVA+ + L++LDIES K+NIYKGK+T++E SL+AAFV+YGA Sbjct: 1 MLINASHDEESRVAIAEDGYLHELDIESAQKTLTKSNIYKGKVTKVEASLQAAFVEYGAA 60 Query: 64 RHGFLPLKEIAREYFPANYSAHGRPN---IKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 R GFL L EI +Y+ P I+DVL QE++VQ+ KEERGNKGAALTT I Sbjct: 61 RQGFLSLSEIHPDYWKDGVDKSTNPRNISIQDVLAPKQELLVQVVKEERGNKGAALTTQI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVL PN R GGISR++ ++R +KE L+ L++PE MGLI+RTAG ++ EAL Sbjct: 121 SLAGRYLVLSPNTTR-GGISRKLSDEERRSMKEILSQLDVPENMGLIIRTAGKDQTLEAL 179 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q D + + W+ I+ +E+ P P LI+ E ++ RA RD+ D+ EI +DN ++ Sbjct: 180 QRDYQYLRRLWDEIRIKSETTPPPALIYLEGDLATRAIRDHFSDDVDEIWVDNHEIYTHT 239 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + + A+ P +KLY G+IPLF Y IESQ E +RE+RL +GGSIV+D TEALT Sbjct: 240 KAFVHAV-LPGKEKLVKLYRGKIPLFRKYGIESQCEEMHEREIRLRTGGSIVLDPTEALT 298 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +ID+NSARAT+G I++TA NLEAA+EIARQLR+RD+GGLIVIDFIDM +H + VE Sbjct: 299 SIDVNSARATKGKHIDDTALAINLEAAEEIARQLRIRDIGGLIVIDFIDMASRKHGQQVE 358 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 + LR+A + D+ARIQ + ISRFGLLEMSRQRL PS+ ES+ CPRC G G +R +S++ Sbjct: 359 DMLRKACKGDKARIQFARISRFGLLEMSRQRLHPSVRESTTEPCPRCQGRGFIRTVDSMA 418 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 L +L +E+ A + VP YL+N KR + IE + ++ + ++ Sbjct: 419 LQMLTRMEDWAEAGKKPTLVVQVPSDTGEYLMNNKRDNIARIEETYE-IQITLQIRPDLD 477 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 PHY + R ++ E + L PP Sbjct: 478 IPHYRIER----------------------------QWTENNQQRVEVLEDTNKRVKPPR 509 Query: 541 PT-PAEPAAPVVA-PAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKA 598 P +P PVV P P A A + G L+ L G+ K Q + Sbjct: 510 PNRKLKPMKPVVGIPTPPPELAEKAEEKKKGPLTTLIAMLT-----GQSRKEKLQKEAEE 564 Query: 599 EAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQ 658 +A+ ER+ R+ R N R R E++ R + E +++ + ++ Sbjct: 565 KAQAEREAQRQSERSRNSRARGEKKSRRKPAAAKTSAPENVAEEKQKTDSNNPNSEKNTP 624 Query: 659 QAEVTEKARTADEQQAP 675 + + A + + Sbjct: 625 KKPRRPRKPRAPKPEGE 641 >UniRef50_Q6FEY0 Ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6FEY0_ACIAD Length = 1138 Score = 636 bits (1640), Expect = e-180, Method: Composition-based stats. Identities = 405/1129 (35%), Positives = 550/1129 (48%), Gaps = 114/1129 (10%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINAT EE+RVAL+ G RLYD D+E+ EQKK+NIYKG +TR+EPSLEA FV+Y Sbjct: 1 MKRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GA+R GFL ++EIA Y A NI++++ EG E++VQ++KEERGNKGAAL+TFI Sbjct: 61 GAQRQGFLSMREIASSYLHA--DPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFI 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNP+ GGISR+I G R ELKE LASL +P GM +IVRTAG+G+S E L Sbjct: 119 SLAGRYLVLMPNNPKGGGISRQISGSVREELKEMLASLNVPRGMSVIVRTAGIGRSQEEL 178 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q DL L W I+ + S P+P L+HQE+ V+ RA RDYLR D+ EILID+ + A Sbjct: 179 QLDLQHLLDLWSQIQSTSNSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEA 238 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + A+ P K+K YT PLF+H+ IESQI++A++REV+LPSGGSIVID TEAL Sbjct: 239 YNFVKAV-MPRQLDKLKTYTLNEPLFAHFAIESQIQTAYEREVKLPSGGSIVIDQTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSA++TRG D+EETA NTNLEAA+EIARQLRLRD+GGL+VIDFIDMT R+QR VE Sbjct: 298 SIDINSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 +LREA + DRARIQ +SRFGL+EMSRQRL PSL E++ +VCPRC GTG VRD SLS Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLS 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSI+R +EE AL+E EV VPV IA++LLNEKR ++ +E GVR ++P+ +E Sbjct: 418 LSIMRKVEEIALRERHGEVQVEVPVEIAAFLLNEKRHSLVYLEQ-TSGVRVTVLPHPHLE 476 Query: 481 TPHYHVLRVRKG------EETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAM 534 TPHY + +G E T +L E+ E+ + P + Sbjct: 477 TPHYEIQYNPEGFAPSSYERTEATRSSEKELGYESSGWHLEDTEHQHASPVSQEASKAKN 536 Query: 535 PDVPPAPTPAEPAAPVVAPAP----------------------KAAPATPAAPAQPGLLS 572 P +P A A PV A +P + A A G +S Sbjct: 537 QQKPASPASAPAATPVKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNNGAVS 596 Query: 573 RFFGALKALFSGGEETKPTEQPAPKA------EAKPERQQDRRKPRQNNRRDRNERRDTR 626 R A ET P P+ A R+Q + + + +N ++ Sbjct: 597 RGQFGQVAHVPAIAETAPVAVPSNNAYMSQNTTKHDAREQVEKDEKPQQQSRQNNKKRKH 656 Query: 627 SERTEGSDNREENRRN------------RRQAQQQTAETRESRQQAEVTEKARTADEQQA 674 E E ++ +E + + Q +Q+ + R +E + + +E Sbjct: 657 KEHREQHNHVQEQPQQVQIHEETVQLSRQEQREQKRHQKRHQSSPSEQHNEQQQTEEAVV 716 Query: 675 PRRERSRRR-NDDKRQAQQ----EAKALNVEEQSVQETEQEERVRPVQPRRKQRQ---LN 726 PRR+R+++R N R Q E A + +ER V R Sbjct: 717 PRRDRNQQRPNRPNRYRDQSVLSEETAQTKAPANATAPVVDERQVRVDQIDVPRDEVLAT 776 Query: 727 QKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNA 786 V E V +ETV P+++ P L + + Q P E + Sbjct: 777 ALVINVDESQSEIVALTEQKETVKTAPVMKSEPVEAKTLPENKVKAATQVEPAVAETKSK 836 Query: 787 DNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELAS------- 839 + RR+ R+ RRR + E ++ P + P+LA Sbjct: 837 QTESTDSASTQVRRASNDPRM----RRRQQREAQKAKAQTPKVLPSQVPQLAQYSIGSLI 892 Query: 840 ---------------------GKVWIRYPIVRPQDVQVEEQ-------------REQEEV 865 + +++ + V E E Sbjct: 893 RHVYGEDCTVLIEQFGLVPTFNRALLKFTEQYAATLVVSEVANATEDKKPVTRDVELPNS 952 Query: 866 HVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQ 925 V PV P S V + A Q E EQ Sbjct: 953 KPAEEVEPAPVLPLTPPQASVSRVANDPRERRRLAKQAAEQAHEQAKLAAEQAQIGSKEQ 1012 Query: 926 PQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEV 985 P +D +V E + + P E A +E VV+ + + + AA V Sbjct: 1013 PA----ADAVATSQVEEAPKSIETPVEAIALVEAVVDQPTATIVQEASTEEVAATSQIAV 1068 Query: 986 AAE-------VETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSD 1027 AE ++ +E T A ++A A E + Sbjct: 1069 EAEQPQHDAVQASLPEIEQAETATTPQAKGKTSKATAKSAPKETSTEQE 1117 >UniRef50_B6BTS7 Ribonuclease E n=2 Tax=Betaproteobacteria RepID=B6BTS7_9PROT Length = 738 Score = 632 bits (1631), Expect = e-179, Method: Composition-based stats. Identities = 311/748 (41%), Positives = 448/748 (59%), Gaps = 39/748 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRML NATQ EE+RVA+++ + DLD E EQ+K+NIYKG ITR+EPSLEAAFV+Y Sbjct: 1 MKRMLFNATQSEEIRVAIINDSTIEDLDYERSSREQRKSNIYKGTITRVEPSLEAAFVNY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +RHGFLP KEI++E++ S +I DV+ EGQEVIVQ+ KEERGNKGAALTTF+ Sbjct: 61 GVDRHGFLPFKEISKEFYSKK-SRKKNLSIADVINEGQEVIVQVSKEERGNKGAALTTFL 119 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG Y+VLMPN+ +GGISRRIEGD+R+ KE L+ L++ +GM +I RTAG+G S E + Sbjct: 120 SLAGRYIVLMPNSSESGGISRRIEGDERSNFKEVLSQLKVKKGMSVIGRTAGIGASVEEI 179 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDL + + EAI+ A+ + APFLI+QESN+++RA RDY DI EILIDN + + A Sbjct: 180 QWDLDYLTQLSEAIQGASGQQEAPFLIYQESNLVIRAIRDYFNTDIEEILIDNQDIYDQA 239 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 Q + + PD++ +I+LY LFS + IE+QIESAF REV+LPSGG IVID TEAL Sbjct: 240 SQFMNHV-MPDYADRIQLYEESTALFSKFNIENQIESAFLREVQLPSGGVIVIDHTEALV 298 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +ID+NS+R+T+G DIE TAFNTNLEAA E+A+QLRLRD+GGLIV+DFIDM +HQR VE Sbjct: 299 SIDVNSSRSTKGRDIENTAFNTNLEAAREVAKQLRLRDIGGLIVVDFIDMENPKHQREVE 358 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 LR+A++ D+ARIQ ISRFGL+E+SRQRL PS+GE+S+ CP+C+GTG +RD +S + Sbjct: 359 ECLRDALKHDKARIQTGRISRFGLMELSRQRLRPSIGETSNGECPKCNGTGRIRDFQSSA 418 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 L I+R+I+E++ K+ Q++ VPV +A++LLNEKR + E+ + + I+ N + Sbjct: 419 LHIIRMIQEQSNKKQGQKISVQVPVDVATFLLNEKREIIIQTESEGNN-KIFIIANKYFD 477 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 P + + G + LSY + + +E+E ++ P +P+ Sbjct: 478 VPQFKITSSDLGNK-KGLSYQEVDVPDVENLDDNEQETKVKQIP----AVKGVIPEKRSR 532 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEE-TKPTEQPAPKAE 599 + L G + + E+ ++ ++ Sbjct: 533 KS-----------------------KNKSLFGFIKGLIASDDDATEDFSEAASDRNNESS 569 Query: 600 AKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQ 659 E + +KP +NNRR RN R + +N + +T E Sbjct: 570 QHLEESEGNKKPYRNNRRRRNNRSRNYRSNQQNQENVNKKP---EMVMVETPVDVEKNSD 626 Query: 660 AEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPR 719 + ++ D+ + + + D + K + E++S Q Q+++ + R Sbjct: 627 KNLDSVNKSKDKPKRNQPRKKAEELQDVNLSDVGLKLVETEKKSSQGAPQDDQAKKPVRR 686 Query: 720 RK----QRQLNQKVRYEQSVAEEAVVAP 743 +K + + + E+ V E AP Sbjct: 687 KKASWAKSEKTAPKKTEKLVMVETKDAP 714 >UniRef50_C0VHW5 Ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VHW5_9GAMM Length = 1143 Score = 629 bits (1622), Expect = e-178, Method: Composition-based stats. Identities = 391/1083 (36%), Positives = 538/1083 (49%), Gaps = 67/1083 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINAT EE+RVAL+ G RLYD D+E+ EQKK+NIYKG +TR+EPSLEA FV+Y Sbjct: 21 MKRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY 80 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GA+R GFL ++EIA YF A NI++++ EG E++VQ++KEERGNKGAAL+TFI Sbjct: 81 GAQRQGFLSMREIANSYFKA--DPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFI 138 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNP+ GGISR+I G R ELKE LA+L +P GM +IVRTAG+G++ E L Sbjct: 139 SLAGRYLVLMPNNPKGGGISRQISGSVREELKEILATLNIPRGMSVIVRTAGIGRTQEEL 198 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q DL L W I+ +A + P+P L+HQE+ V+ RA RDYLR D+GEILID+ + A Sbjct: 199 QLDLQHLLDLWAQIQSSASTGPSPMLVHQEAGVVTRAIRDYLRDDVGEILIDSEQAYNEA 258 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + A+ P K+K YT PLF+H+ IESQI++A++REV+LPSGGSIVID TEAL Sbjct: 259 YNFVKAV-MPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALV 317 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSA++TRG D+EETA NTNLEAA+EIARQLRLRD+GGL+VIDFIDMT R+QR VE Sbjct: 318 SIDINSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVE 377 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 +LREA + DRARIQ +SRFGL+EMSRQRL PSL E++ +VCPRC GTG VRD SLS Sbjct: 378 AKLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLS 437 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSI+R +EE AL+E EV VPV IA++LLNEKR ++ +E + VR ++P+ +E Sbjct: 438 LSIMRKVEEIALRERQGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSN-VRVTVLPHPHLE 496 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFA-ERKRPEQPALATFAMPDVPP 539 TPHY + G + E E+ E A A Sbjct: 497 TPHYQIQYNPAGFAPSSYERTEATRSSEKELGYESSEWHLEDAEHVHAAPAQAQTAAPQK 556 Query: 540 APTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAE 599 + A P A P A+P A + + + + S EQ Sbjct: 557 KTAQPQAAQPKQAQVPAQKSASPCAWLENLFVQKQAQTIDQSRSAQNAAAAIEQLVNGGA 616 Query: 600 AKPERQQDRRKP---------RQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQT 650 + P N ++ R + + +R N+ Q +++ Sbjct: 617 VSRGQFGQVNTPVVTETPAPASTTNNAYISQNPVKHEARESFEKDEKTHRPNQNQKKRKH 676 Query: 651 AETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAK------------ALN 698 E RE A + + Q R+E+ + + KRQ +++ A Sbjct: 677 KEQREQHAHAHEQQNQVHEEVVQLSRQEQRHEQRELKRQQKRQQTQEPQNQQQHHDAAQG 736 Query: 699 VEEQSVQETEQEERVRPVQPRRKQRQ--LNQKVRYEQSVAEEAVVAPVVEETVAAEPIV- 755 E V E+ ++ RP +P R + Q LN+ ++ V V + EP+ Sbjct: 737 NESAPVPRRERNQQ-RPNRPNRHRDQSVLNEAPVVTETAVNPQQVKVDVIDAPRTEPMNT 795 Query: 756 ------------------QEAPAPRTELVKVPLPVVAQTAPEQQE------ENNADNRDN 791 Q+ P T++ VP V E E A+ Sbjct: 796 ALVVNIDQGQSEIIALNPQQKTTPATKVEAVPAVVEKAEVTPTAEAEPVVIEQEAETEAT 855 Query: 792 GGMPRRSRRSPRHLR-------VSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWI 844 +R+ PR R V+ + + + PT L K+ I Sbjct: 856 QTPAKRASNDPRSRRRQRGGQAVAKEASVKIAPSQIPTLGQYTLGSLIRHVYGEDCKILI 915 Query: 845 -RYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVA 903 ++ ++ + +++ EQ + T V + P + + APV Sbjct: 916 EQFGLITTFNRALQKFTEQYASTLVVENTVVEEKRPVTRDAELPTQKAMEEAEPAPVLDL 975 Query: 904 EPQPEVVETTHPEVIAAAVTEQPQVITESDVAVA----QEVAEQAEPVVEPQEETADIEE 959 P + + + +A V E E E +ETA +EE Sbjct: 976 TPPKASAARVANDPRERRRLAKLAAEQAKEAHLASNATPAVVENTEVAAEEVKETAPLEE 1035 Query: 960 -VVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEY 1018 VE V +P +A A A + +A E Sbjct: 1036 PSVEATPVPEQQPLELAATAVEAAETETVTAVVEETQPEPQQPAPKPAKEVVEKATKAEK 1095 Query: 1019 VPE 1021 V E Sbjct: 1096 VTE 1098 >UniRef50_Q2RSE6 RNAse E n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RSE6_RHORT Length = 889 Score = 616 bits (1589), Expect = e-174, Method: Composition-based stats. Identities = 241/539 (44%), Positives = 326/539 (60%), Gaps = 48/539 (8%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 KRMLI+A EE RV ++DG RL + D+E+ +Q K NIY K+ R+EPSL+AAFV+YG Sbjct: 3 KRMLIDANHPEETRVVVLDGTRLDEFDVETSTKKQLKGNIYLAKVVRVEPSLQAAFVEYG 62 Query: 62 AERHGFLPLKEIAREYFP------------------------------------------ 79 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFNEIHPDYYQIPVADREKLIAEEALEAAADDDDEADSVETLGGDEAEDSAPA 122 Query: 80 --ANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAG 137 A I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y V MPN R G Sbjct: 123 PRAKSRVSRSYKIQEVIKRRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVFMPNTTRGG 182 Query: 138 GISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKK 196 G+SR+I DR LK + L P+G +I+RTAG +S ++ D + L+ W++I++ Sbjct: 183 GVSRKITSATDRKRLKSIMGELIGPKGSAVILRTAGSERSRAEIRRDHDYLLRTWDSIRQ 242 Query: 197 AAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKI 256 + AP LIH+E ++I RA RD +DI EIL++ A+ + L P + K+ Sbjct: 243 TTLASRAPCLIHEEGSLIKRAIRDIYSRDIEEILVEGDAGYRTAKDFMKMLT-PSHAKKV 301 Query: 257 KLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDI 315 + Y EI PLF YQ+ESQ+++ +L SGG +VI+ TEAL AID+NS R+TR +I Sbjct: 302 QPYKDEIMPLFHRYQVESQMDAMHSPIAQLRSGGYLVINQTEALVAIDVNSGRSTRERNI 361 Query: 316 EETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQ 375 EETA+ TNLEAADEIARQLRLRDL GLIVIDFIDM R VE R+++A+R DRARIQ Sbjct: 362 EETAYKTNLEAADEIARQLRLRDLSGLIVIDFIDMDDPRSNANVERRVKDALRNDRARIQ 421 Query: 376 ISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKEN 435 + IS FGLLEMSRQRL PSL E+S CP C G+G++R ES ++ ILR+IEEE ++ Sbjct: 422 LGRISHFGLLEMSRQRLRPSLMETSFQPCPHCHGSGSLRSVESTAIHILRIIEEEGVRRR 481 Query: 436 TQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEE 494 + EV VP IA Y+LN KR+ + AIE R D + ++ +D + P Y + RV+ E Sbjct: 482 SSEVTVTVPTAIALYILNNKRTVLAAIEARYD-FQVFLLGDDTLIVPDYRMDRVKAERE 539 >UniRef50_A8ZW09 Ribonuclease, Rne/Rng family n=2 Tax=Desulfobacteraceae RepID=A8ZW09_DESOH Length = 499 Score = 599 bits (1544), Expect = e-169, Method: Composition-based stats. Identities = 222/486 (45%), Positives = 313/486 (64%), Gaps = 7/486 (1%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 ++LINA EE R+A V RL + +E+ K+NIYKG + R+EPSL+A FVDYG Sbjct: 3 DKILINAVDTEECRIARVKDNRLCEFHLETTSRVTTKSNIYKGLVARVEPSLQAVFVDYG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFIS 121 ERHGFL +I +YF + +I+D+++ GQE++VQ+ K+ +KGAALTTF+S Sbjct: 63 EERHGFLQKHDIHTDYF---QDSKVDGSIRDLIKPGQEMLVQVVKDPIMHKGAALTTFLS 119 Query: 122 LAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 + G + VLMP + G+S++IE ++ R LKE ++ L +PE G+I+RTA G + + Sbjct: 120 IPGRFCVLMPGSV-TKGVSKQIEDEEERKRLKEIVSGLRVPENFGVILRTAAKGAAKTVI 178 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 DLS+ ++ W+ IKK ++ AP IH+E + VRA RDYL DI EILID P V + Sbjct: 179 AKDLSYLMRLWKTIKKEGMNQKAPAAIHKERDFAVRAIRDYLTADIQEILIDEPAVHQEV 238 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + +A L P + ++LY G P+F+ +++ESQIES F+ V+LPSGGSIV+ TEAL Sbjct: 239 KDFVA-LVSPKHAKIVRLYQGAKPIFTKHELESQIESIFENRVQLPSGGSIVLTQTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +ID+NS ++ + IEETA TNLEAA+EIARQLRLRD+GGLIVIDFIDM P ++ AVE Sbjct: 298 SIDVNSGKSRQKHSIEETALQTNLEAAEEIARQLRLRDMGGLIVIDFIDMKPRKNNAAVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 L+ V++D+AR + IS+FGLLEMSRQRL S+ SS C C G G V E L Sbjct: 358 RALKAHVKEDKARTDVGKISKFGLLEMSRQRLRQSIETSSMVTCGHCGGRGYVMATEKLG 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 +++LR + E+LK V A VP +A YLLN+KR+ + +E R+D + I + M Sbjct: 418 INVLRRLRLESLKHRGVAVTATVPAVVADYLLNKKRTELLELEARRD-LAITITGDPAMH 476 Query: 481 TPHYHV 486 + Sbjct: 477 LGESDI 482 >UniRef50_Q1PY04 Strongly similar to ribonuclease E (RNase E) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PY04_9BACT Length = 509 Score = 597 bits (1539), Expect = e-169, Method: Composition-based stats. Identities = 203/485 (41%), Positives = 297/485 (61%), Gaps = 10/485 (2%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 RMLINA + EE R+A+++ L +L IE EQ NIYKG++ IEP+LEAAFVD G Sbjct: 10 RMLINAIEPEECRIAILENNILEELYIERSSREQIAGNIYKGRVVNIEPNLEAAFVDIGL 69 Query: 63 ERHGFLPLKEIAREYFPANYSAHGRP------NIKDVLREGQEVIVQIDKEERGNKGAAL 116 +++GFL ++ N P I+DVL++G+E++VQ+ KE G KG +L Sbjct: 70 KKNGFLHASDVLVPSEGKNQGEEADPPPVRHHRIRDVLQQGKEILVQVTKESLGTKGPSL 129 Query: 117 TTFISLAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGK 175 TT+ISL G YLVLMP R G+S++I E ++R LK+ L SL P+ +G IVRTAGV + Sbjct: 130 TTYISLPGRYLVLMPEVKRY-GVSKKITEEEERQRLKKILESLNPPKNIGFIVRTAGVQQ 188 Query: 176 SAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPK 235 + LQ D + LK W+ I K ++ AP +I+QES++++R RD QDI EI++D+ Sbjct: 189 TKRELQKDFHYLLKLWKNICKKSKEIDAPGVIYQESDLVIRVIRDIFSQDINEIIVDSES 248 Query: 236 VLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDS 295 V + R+ + + P + ++K Y E PLF ++ IE+ IE R++ L GGSIV++ Sbjct: 249 VFKRTREFLRII-MPKYEKQLKFYNKEKPLFHNFGIENAIEEINSRKIPLLHGGSIVLEQ 307 Query: 296 TEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRH 355 TEAL AID+NS + D EETAF TN+ AA EIARQ+RLRDLGG+IVIDFIDM +H Sbjct: 308 TEALVAIDVNSGKYKGKCDPEETAFRTNMIAAKEIARQIRLRDLGGVIVIDFIDMRNEKH 367 Query: 356 QRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRD 415 +AVE + +++++ RAR ++ +S+FG +E++RQR+ PSL + C C GTG + Sbjct: 368 IQAVEKAIADSLKRHRARTKMLKMSKFGTIEITRQRIRPSLRDVLFEECKFCCGTGYAKT 427 Query: 416 NESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVP 475 ESL L+I+R ++ + + YL N+KR + IE + + VI Sbjct: 428 VESLCLNIMRDVKFALHLPQVVRIEITSNNDVVDYLQNQKRKQMAEIEDAYNK-KIVIFT 486 Query: 476 NDQME 480 + E Sbjct: 487 DTANE 491 >UniRef50_A1AW88 Ribonuclease, Rne/Rng family n=3 Tax=Gammaproteobacteria RepID=A1AW88_RUTMC Length = 584 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 245/522 (46%), Positives = 345/522 (66%), Gaps = 4/522 (0%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M +LINA EE+RV +V ++L L+IE+ +++ K NIY GKI+R+E SLEAAFVDY Sbjct: 1 MNHILINAIYSEEIRVGIVKNKKLTGLNIETSLNKKTKGNIYHGKISRVEQSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G E+ GFLP KE+A + + I DVL+EGQE+IVQI+KEERGNKGAAL+T+I Sbjct: 61 GKEKQGFLPFKEVAETLHNDVKAKGEKLTISDVLKEGQEIIVQIEKEERGNKGAALSTYI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LAG+Y++LMPNNP+ GISR+I DR LKE ++ + LP GLI+RTAG GKS E L Sbjct: 121 NLAGAYMILMPNNPKNHGISRQIVALDRQSLKEIISKIILPNHSGLIIRTAGSGKSFEEL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QW++ + W++I A +R APFLI+QES++I+R RD+LR D ++ID + + A Sbjct: 181 QWEVDYLSDLWKSINTATLTRSAPFLIYQESDIIIRTLRDHLRSDTDSVIIDELEAFQNA 240 Query: 241 RQHIAALGRPDFSSKIKLYT-GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 ++ ++ + P + +IK + E LF+H IE+Q++S F REV L +G IV D TEAL Sbjct: 241 KEFVSFV-LPHYLDRIKFFDVSEHSLFNHMGIEAQVKSVFNREVSLRTGAIIVFDPTEAL 299 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 TAIDINSARAT+G DIEETA+NTNLEA EIA QL+LRD+GGL+VIDFIDM H+ ++ Sbjct: 300 TAIDINSARATKGADIEETAYNTNLEATKEIALQLQLRDIGGLVVIDFIDMASEEHRVSI 359 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 E + +A DRARIQI IS+FGLLEMSRQRL S+ ES C C G GT +L Sbjct: 360 EKAMEKATNADRARIQIGTISQFGLLEMSRQRLMNSVTESVEKPCSACHGRGTTPTIPTL 419 Query: 420 SLSILRLIEE-EALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 +L+ILR +E+ + T + + + +Y+LNEKR + +E + G++ ++PN Sbjct: 420 ALTILRQLEDGCNAAKQTAHLTIQSSIEVITYILNEKRQEIIKLEGKH-GIKITLLPNPY 478 Query: 479 METPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAE 520 M+ P++ + + + + + SY + +A + AE Sbjct: 479 MQFPNFTINKQKGSKRSQHKSYQSISKPQHVLAENGLSDQAE 520 >UniRef50_A0LJB4 RNAse E n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LJB4_SYNFM Length = 495 Score = 590 bits (1522), Expect = e-167, Method: Composition-based stats. Identities = 217/495 (43%), Positives = 295/495 (59%), Gaps = 9/495 (1%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 M+INA EE RVAL++GQ L IE+ + NIYKG +T ++PSL+AAFV+YG E Sbjct: 5 MIINAIHPEEFRVALMEGQTLEGFFIETATRGKVVGNIYKGIVTHVQPSLQAAFVNYGME 64 Query: 64 RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLA 123 R+GFLP EI EY+ + R I+DV+ GQEV+VQ+ KEE G+KGA LTT+ISLA Sbjct: 65 RNGFLPFPEIHPEYY--EEDSDERVRIQDVIHSGQEVLVQVVKEELGSKGALLTTYISLA 122 Query: 124 GSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQW 182 G +VLMP + G+SR+IE R LKE L++PE G+I+RTA G++ + Sbjct: 123 GRDVVLMPGQSQ-RGVSRKIEDGGQRERLKELAGDLKVPEEFGVILRTAAEGRTKREVTK 181 Query: 183 DLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQ 242 D + +K WE I+K + PAP LI++E ++ VR RDY +I IL+D+ +VL+ + Sbjct: 182 DFNHLMKIWEEIRKHVQETPAPALIYKEQDLAVRVIRDYFNPNIKTILVDDREVLKQVKD 241 Query: 243 HIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAI 302 I + P ++ Y + P+ Y +E QI F+++V L SGG +VID TEAL A+ Sbjct: 242 FIRIIS-PRHDRVVRFYKEDGPITGKYNLEEQIAQIFRKKVPLKSGGHLVIDPTEALVAV 300 Query: 303 DINSAR-ATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVEN 361 D+NS R + G +EE F N+EAA EI RQLRLRDLGGLIVIDFIDM RH R VE Sbjct: 301 DVNSGRTNSGEGALEEMVFKVNMEAAAEIPRQLRLRDLGGLIVIDFIDMRDNRHTREVER 360 Query: 362 RLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSL 421 RL+E +++D+A+I + ISRFGLLE+SRQ L ++ S+ CP C G G VR E+ +L Sbjct: 361 RLKEEIKKDKAKITVGRISRFGLLELSRQHLGLNIMRGSYKECPLCQGAGMVRSAETTAL 420 Query: 422 SILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM-- 479 LR I ++ V A +A YLLN KR + +E R G I M Sbjct: 421 CYLRKIWLTLSQKKPASVRATFAPEVAHYLLNRKRQELTRLEERY-GTNIQIESLATMLP 479 Query: 480 ETPHYHVLRVRKGEE 494 H E+ Sbjct: 480 HDGHLEFTARETQEK 494 >UniRef50_Q89AH3 Putative truncated ribonuclease E n=22 Tax=Bacteria RepID=RNE_BUCBP Length = 410 Score = 583 bits (1503), Expect = e-164, Method: Composition-based stats. Identities = 253/401 (63%), Positives = 327/401 (81%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M+RMLINA + ++LR+AL+DGQ+LYDL++E+ +Q+K+NIYKGKI RIEPSLEAAFVDY Sbjct: 1 MRRMLINAIEIKKLRIALIDGQQLYDLNVENIDKKQRKSNIYKGKIVRIEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +++GFLPLKEI+R YFP N S + +IK++L+EGQE IVQIDKEERG KGA LTTFI Sbjct: 61 GEKKNGFLPLKEISRNYFPNNCSNYRHLHIKNILKEGQECIVQIDKEERGTKGALLTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG+YLVLMPN P GISR+IEG DR LK+ ++ L +PE MG+I+RT+GVG+S E L Sbjct: 121 SLAGNYLVLMPNCPHLEGISRKIEGIDRFHLKKIISMLMVPENMGIIIRTSGVGRSIETL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q DL+FR+K+W IKK+AE AP LIH+ESN+++R RDYL++DI EI++DNP++LELA Sbjct: 181 QLDLNFRVKNWYTIKKSAEINTAPCLIHKESNIVIRTLRDYLKKDIQEIIVDNPEILELA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 R ++ + F KIKLYTG PLFS+Y+IESQI + +R V+LPSGGSI+ID TEALT Sbjct: 241 RDYMFNMNCSYFEKKIKLYTGSDPLFSYYKIESQINALLRRIVKLPSGGSIIIDYTEALT 300 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AIDINS+++T+G +IEETAFNTN EA EIARQLRLRDLGGLIVIDFIDM+ ++HQ+ +E Sbjct: 301 AIDINSSQSTKGVNIEETAFNTNYEAVREIARQLRLRDLGGLIVIDFIDMSVLKHQKMIE 360 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSH 401 L + +++DRAR+Q+ IS+FGLLEMSRQ L L + +H Sbjct: 361 LHLHQVLQKDRARVQVGSISQFGLLEMSRQCLGSPLKKINH 401 >UniRef50_B0SXB4 Ribonuclease, Rne/Rng family n=2 Tax=Alphaproteobacteria RepID=B0SXB4_CAUSK Length = 905 Score = 578 bits (1489), Expect = e-163, Method: Composition-based stats. Identities = 282/866 (32%), Positives = 401/866 (46%), Gaps = 92/866 (10%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLI+A EE RV +VDG R+ + D ES +Q + NIY K+TR+EPSL+AAF++YG Sbjct: 3 KKMLIDAAHAEETRVVVVDGSRVEEFDFESQTRKQLRGNIYLAKVTRVEPSLQAAFIEYG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAH------------------------------------ 85 RHGFL EI +Y+ + Sbjct: 63 GNRHGFLAFNEIHPDYYQIPVADREALMRDDSHDDEDDHDHGRDGDDGDAVDDEEDAVEE 122 Query: 86 ----------GRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPR 135 + I++V+R Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R Sbjct: 123 ELARRKRRLMRKYKIQEVIRRRQIMLVQVVKEERGNKGAALTTYLSLAGRYGVLMPNTAR 182 Query: 136 AGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAI 194 GGISR+I DR LK + L++P+GMGLIVRTAG ++ ++ D + L+ WE I Sbjct: 183 GGGISRKITTITDRKRLKSVVQGLDVPQGMGLIVRTAGAKRTKAEIKRDYEYLLRLWENI 242 Query: 195 KKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSS 254 + AP LI++E +++ RA RD +D+ I ++ + AR + L P + Sbjct: 243 RDNTLHSIAPALIYEEEDLVKRAIRDMYDKDLEGIWVEGEAGYKEARDFMRML-MPSQAK 301 Query: 255 KIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGD 314 K+ Y PLF ++IE + + V L SGG +VI+ TEAL AID+NS +ATR + Sbjct: 302 KVFPYREAAPLFVKHKIEDHLAQIYSPVVPLRSGGYLVINQTEALVAIDVNSGKATRERN 361 Query: 315 IEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARI 374 IE TA TN+EAA+E ARQLRLRDL GLIVIDFIDM ++ RAVE L+++++ DRARI Sbjct: 362 IEATALKTNMEAAEEAARQLRLRDLAGLIVIDFIDMDEGKNNRAVEKILKDSLKDDRARI 421 Query: 375 QISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKE 434 Q+ IS FGL+E+SRQR + E + HVC C GTG VR ES +L+ LR +E EALK Sbjct: 422 QMGKISGFGLMEISRQRRRTGVLEGTTHVCEHCDGTGRVRSVESSALAALRAVEVEALKG 481 Query: 435 NTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEE 494 V V P+ Y+LNEKR+ + ++ ++ +D + + + R GE Sbjct: 482 -GGAVTLKVSRPVGIYILNEKRAYLLRLQQTHALF-VTVLVDDSLHQAEHDIDRTELGER 539 Query: 495 ---------TPTLSY------MLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPP 539 P Y + EE + + + EE E R +PA A A D Sbjct: 540 PAPQIFAPIEPDPVYDDEAFEDEDEEDEEEIEVGASEEDDEAPRVARPARAEPAEDDANG 599 Query: 540 APTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAE 599 AP A A + EE++ + + Sbjct: 600 RRGRKRRRRGGRRDERDEAPVEAAGDEDEEDADGVERAEGDIEGEDEESRRRRRRRGRRG 659 Query: 600 AKPERQQDRRKPRQ------------------------NNRRDRNERRDTRSERTEGSDN 635 + ++D +P + R R ERTE + Sbjct: 660 GRRGGREDGDRPADAFAWTRPRVPFGENAFVWHDPEALDGRNGERRPSGDRPERTERPEP 719 Query: 636 REE--NRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQE 693 E R R + + E R + RT APR ER+ D + Sbjct: 720 VEAVVAERAERPERAERGERGGRRGRGRGERGDRTETSADAPRAERTPAPRVDVADLEPA 779 Query: 694 AKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAE-EAVVAPVVEETVAAE 752 A V E + E + P++ +R ++ + + EA V V ETV A Sbjct: 780 PLAPAVIEGPPADVWVELPPQDEAPKKARRPRSRGRKATDAETSVEASVEESVAETVEAT 839 Query: 753 PIVQEAPAPRTELVKVPLPVVAQTAP 778 P + V+V V Q AP Sbjct: 840 PAPVDETPLVAADVEVEASVAVQPAP 865 Score = 43.2 bits (100), Expect = 0.062, Method: Composition-based stats. Identities = 49/236 (20%), Positives = 69/236 (29%), Gaps = 32/236 (13%) Query: 802 PRHLRVSGQRRRRYRDERYPTQSPMPLTVACAS----PELASGKVWIRYPIVRPQDVQVE 857 P L RR D T+ P P+ A PE A + Sbjct: 694 PEALDGRNGERRPSGDRPERTERPEPVEAVVAERAERPERAERGERGGRRGRGRGERGDR 753 Query: 858 EQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEV 917 + + + A +EP AP V E A V V P + Sbjct: 754 TETSADAPRAERTPAPRVDVADLEPAPLAPAVIEGP---PADVWVELPPQDEAPKKARRP 810 Query: 918 IAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQP 977 + + T + +V + VAE E P +ET + VE V +P +P Sbjct: 811 RSRGR-KATDAETSVEASVEESVAETVEATPAPVDETPLVAADVEVEASVAVQPAPAPEP 869 Query: 978 AAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEY---VPEAPRHSDWQR 1030 V PE AP+ P P PE P+ W+R Sbjct: 870 ---------------VMVAPEPV------PAPVAAEPDPAEILTPPEKPKRGWWRR 904 >UniRef50_Q2LU58 Ribonuclease E n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU58_SYNAS Length = 630 Score = 576 bits (1484), Expect = e-162, Method: Composition-based stats. Identities = 235/556 (42%), Positives = 322/556 (57%), Gaps = 13/556 (2%) Query: 1 MKR-MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 MK MLINA E+ R+A+V+ +L + +I+ E NIYKG + ++E L+AAFV+ Sbjct: 1 MKHIMLINAVHHEQKRMAIVEDGKLVEFNIQMSLREPITGNIYKGIVLKVERGLQAAFVN 60 Query: 60 YGAERHGFLPLKEIAREYFPANYSAHGRPNIKDV-LREGQEVIVQIDKEERGNKGAALTT 118 +G + GFLPL++++ YF A L+ GQEVIVQ+ +E G KGA LTT Sbjct: 61 FGVGKDGFLPLRDVSPAYFTEKKEAGRESAHSRGSLKIGQEVIVQVAREVSGRKGALLTT 120 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSA 177 ++SL G YLVL+PN + GISR+IE ++ R LK + +++ EGMG IVRTAG+ ++ Sbjct: 121 YLSLPGRYLVLLPN-KHSSGISRKIEAEEDRRLLKTLVEQIKIDEGMGFIVRTAGINRTK 179 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 + L D L+ W+ I+K AE+ PAP LI+QES+ VR+ RDY +I EIL+D+ + Sbjct: 180 QELSRDYQHLLRLWKEIQKRAETDPAPALIYQESDFGVRSLRDYFTSEIEEILVDDLETY 239 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 R + A+ P IK Y +P+FS Y +E QI +Q V L SGGSIVI TE Sbjct: 240 RKMRAYCKAVA-PRNLRMIKQYKERLPIFSQYNLEEQIREIYQERVELKSGGSIVISPTE 298 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 A+ ID+NS RA+ ++E+TAF TNLEAA+EI RQLRLRDLGGLIVIDFIDMT +H+ Sbjct: 299 AMITIDVNSGRASNKKNVEDTAFKTNLEAAEEIGRQLRLRDLGGLIVIDFIDMTDRKHEA 358 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 VE ++A+ DRARIQ+S IS+FG+LE+SRQ+ ++ E S+ CP CSG+G E Sbjct: 359 EVEKTFKKALTLDRARIQMSRISKFGILELSRQKKHSTIQEISYTTCPFCSGSGIRPSLE 418 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 +LS R IE EA KE + VP IA YLLN+KR+ + IET D + I Sbjct: 419 YTALSAFRKIETEAAKEKANALKISVPYEIADYLLNQKRTDIQRIETLYD-LSIHISGKA 477 Query: 478 QMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 M H + V + PS A R + +PA + A V Sbjct: 478 DMTWDHAAISAVAR-------ELATETPETAEEEKPSLPVEALRGQELEPAASGNAGESV 530 Query: 538 PPAPTPAEPAAPVVAP 553 A P + A Sbjct: 531 ETASGSGGPEELLPAT 546 >UniRef50_D2R4N9 Ribonuclease, Rne/Rng family n=2 Tax=Planctomycetaceae RepID=D2R4N9_9PLAN Length = 543 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 212/527 (40%), Positives = 305/527 (57%), Gaps = 43/527 (8%) Query: 1 MK-RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 MK MLIN +Q EE R+A+++ L +L IE + NIY+G+I +EPS++AAFVD Sbjct: 7 MKSEMLINVSQPEECRIAIIEDGLLEELYIERASQDNYVGNIYRGRIVNLEPSIQAAFVD 66 Query: 60 YGAERHGFLPLKEIAREYF------PANYSAHGR-------------------------- 87 +G R+GFL + ++ +YF PA GR Sbjct: 67 FGVGRNGFLHISDVEPQYFRQGGYDPAEQIGGGRLADIDTGEDDDAPRPQQRRERRPPRG 126 Query: 88 ------PNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISR 141 P I+++ R G EV+VQ+ KE G KG L+T+IS+ G YLVLMP R G+SR Sbjct: 127 GRPRVKPPIQEIFRRGDEVLVQVIKEGIGTKGPTLSTYISIPGRYLVLMPALGRV-GVSR 185 Query: 142 RIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAES 200 +IE D+ R L++ L L P+G+G IVRTAG ++ + L D+++ L+ W+ I + + Sbjct: 186 KIEDDELRRTLRDTLLELNPPKGLGFIVRTAGQDRTKKELSRDMAYLLRLWKVIVRRLKK 245 Query: 201 RPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYT 260 P I++ES++I+R RD +I I ID+P+ E A++ + L P +++ Y Sbjct: 246 TAGPATIYEESDMIIRTIRDIFTAEIDAIYIDHPEAFERAKEFLQ-LVMPRNVNRLHQYE 304 Query: 261 GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAF 320 G PLF Y++E +I +QR+V L GGSIVID TEAL AID+NS D +ETA+ Sbjct: 305 GREPLFHKYKVEQEIVQIYQRKVPLRGGGSIVIDQTEALVAIDVNSGNFRAEDDADETAY 364 Query: 321 NTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHIS 380 N+ AA EIARQLRLRDLGG+IV DFIDM RH+R VE LR+A+R+DRAR +I S Sbjct: 365 QLNISAAKEIARQLRLRDLGGVIVNDFIDMRKERHRRGVERALRDAMRRDRARTKILRTS 424 Query: 381 RFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVH 440 FGL+EM+RQR+ PSL S + CP CSG G V+ ES+++ ++R++ + + N V Sbjct: 425 PFGLIEMTRQRIRPSLKRSVYGDCPCCSGRGVVKTAESMAIEVVRMLMLASQQPNVSRVT 484 Query: 441 AIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVL 487 V +ASYL N+KR + +E V I+ ++ H V Sbjct: 485 VRVNSEVASYLNNKKRREIMKLEDDAQMV-VQILSHEGAFPEHLQVE 530 >UniRef50_C8W5Q7 Ribonuclease, Rne/Rng family n=11 Tax=Bacteria RepID=C8W5Q7_DESAS Length = 564 Score = 573 bits (1477), Expect = e-161, Method: Composition-based stats. Identities = 163/499 (32%), Positives = 267/499 (53%), Gaps = 6/499 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + ++ +EE RVA+++ + ++ IE +++ + NI+KGK+ + P ++AAFVD Sbjct: 1 MLKEIVVNVGEEETRVAVLEDKVTVEIYIERAINQRLEGNIFKGKVENVLPGMQAAFVDI 60 Query: 61 GAERHGFLPLKEIAREYFPANY--SAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 G +++ FL +++ P S NI DVL++GQ+++VQI KE G KG +TT Sbjct: 61 GLDKNAFLYVEDALPSRNPEENRNSLDLCANIGDVLKQGQDLVVQIVKEPIGTKGPRITT 120 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAE 178 I+L G YLVLMP GISRRI + E + LA+ P MGLIVRT G S E Sbjct: 121 HITLPGRYLVLMPTVDYI-GISRRIADEQERERLKELAARVKPRDMGLIVRTVAEGVSEE 179 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 L D++ K W I + P P L+H++ ++ R RD +D+ ++ID+ E Sbjct: 180 ELAQDVNVLAKLWRKIINRSNHGPVPNLLHRDLELVHRILRDIFTEDVDRLIIDSRYEYE 239 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 + + + P K+ + LF Y IE ++E A +R+V L GG +VID EA Sbjct: 240 RVLELL-DIIDPQLKIKVSV-DERENLFEEYGIEMELEKAVKRKVWLKCGGYLVIDQAEA 297 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 LTAID+N+ + ++E+T TNL+AA EIARQLRLR++GG+I++DFIDM H++ Sbjct: 298 LTAIDVNTGKFVGSTNLEDTVLRTNLDAALEIARQLRLRNIGGIIIVDFIDMLEDEHRQK 357 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 V L + +++D+ + + I++ GL+EM+R+++ PSL E CP C G G V E+ Sbjct: 358 VLEVLEKEIKKDKTKTNLLGITQLGLVEMTRKKVRPSLSEMLQKPCPYCEGRGKVLSEET 417 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 + + I + + + + +A+ L+ S + +E + G I + Sbjct: 418 VGIYFKNEIYQLSRQTPADTILVEANPLVAARLIGSGGSNLRDLENK-TGKNLYIRGSAN 476 Query: 479 METPHYHVLRVRKGEETPT 497 + + ++ Sbjct: 477 YHIESVKIRPLYNKDDIEA 495 >UniRef50_B3DX65 Ribonuclease G and E n=7 Tax=Verrucomicrobia RepID=B3DX65_METI4 Length = 554 Score = 567 bits (1461), Expect = e-160, Method: Composition-based stats. Identities = 189/507 (37%), Positives = 280/507 (55%), Gaps = 17/507 (3%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 + + + + E RVAL+D L + IE ++ NIYKG++ I+ L+A FVD G Sbjct: 49 NKEIAISCEPLERRVALLDEGLLEEFAIERGSQKEIAQNIYKGRVNNIDQGLKALFVDIG 108 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPN------------IKDVLREGQEVIVQIDKEER 109 ++ FL + A R I ++ G EV+VQ+ K Sbjct: 109 IGKNAFLHFWDAIPAALDAGIELFERKGTKSKARLPRAEDIPNIYPPGSEVVVQVTKGPI 168 Query: 110 GNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIV 168 G KG +TT I+LAG YLVLMP N + GISR+IE +R L++ L L +PEGMG+I+ Sbjct: 169 GTKGPRVTTNITLAGRYLVLMPYNEQ-FGISRKIEDPKERARLRKILNELRIPEGMGVII 227 Query: 169 RTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGE 228 RT G G+ + DL+ L+ W AI++ PAP L++ E ++I R RD+L D+ + Sbjct: 228 RTVGEGQKSRYFVRDLAILLQKWNAIEQKMRECPAPVLLYMEPDLIERTVRDFLTDDVEK 287 Query: 229 ILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSG 288 I ID+ ++ + +A + + KI Y IPLF IE QI++AF R+V LPSG Sbjct: 288 IYIDDENEVKRIKDLVAQISKRS-QKKIIYYNEPIPLFEKLNIERQIDTAFMRKVELPSG 346 Query: 289 GSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFI 348 G I+ID TEAL AID+N+ +A G D + TN+EAA EI+RQLRLR++GGL+VIDFI Sbjct: 347 GYIIIDETEALVAIDVNTGKAKVGKDQDNMILKTNIEAAAEISRQLRLRNIGGLVVIDFI 406 Query: 349 DMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCS 408 DM R Q V +L+E VR+DRA+I + IS FGL+EM+RQR+ S+ S + CP C Sbjct: 407 DMKSRRDQHLVFEKLKECVRKDRAKINLLPISSFGLVEMTRQRVQESIWHSLYVPCPHCH 466 Query: 409 GTGTVRDNESLSLSILRLIEEEAL-KENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQD 467 G G V+ E++S+ I R I +E+ I+ + L +E + +E R Sbjct: 467 GRGMVKSPETMSIEIQRAINRVIRLHPEVKELRVILNGFVLDRLKSEDEELLVDLERRMQ 526 Query: 468 GVRCVIVPNDQMETPHYHVLRVRKGEE 494 G + + ++ + ++ GE+ Sbjct: 527 G-KLYFRTDPRINYEEFKIVNALTGED 552 >UniRef50_C6E0U6 Ribonuclease, Rne/Rng family n=8 Tax=Desulfuromonadales RepID=C6E0U6_GEOSM Length = 919 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 297/1002 (29%), Positives = 446/1002 (44%), Gaps = 91/1002 (9%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 MLINA EE RVA+V+ RL DLD+E G+EQ + NIYKG + R+E L+AAFVD G + Sbjct: 1 MLINALHPEEARVAIVEDGRLVDLDVEIAGNEQIRGNIYKGVVVRVEQGLQAAFVDIGLK 60 Query: 64 RHGFLPLKEIAREYFP-----ANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 + GFL + E+ E + H RP I++VLR GQE+IVQ++K ER NKG+ALTT Sbjct: 61 KLGFLQMGELHPENWKWRDDIPEDQRHRRPRIQEVLRRGQELIVQVEKGERDNKGSALTT 120 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSA 177 ++SL G Y+VLMP + A GISR++EGD +R +LKE +A + +PEG G I+RT +G++ Sbjct: 121 YVSLPGRYMVLMPGSDSA-GISRKVEGDGERKKLKEIIAEMTIPEGYGYIIRTEAMGRTR 179 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 + LQ DL + ++ I+ + +I+QES +I+R RDY DI E+L+D+ V Sbjct: 180 DELQKDLDNLIATYQGIRSKGLAMKGAGMIYQESALIIRTIRDYFSADIDEVLVDSKDVY 239 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 R + + P F +K++ + P+FS YQ+E QI+ ++++V L SGGSI I+ TE Sbjct: 240 NDVRDCLKEID-PAFEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSIFIEPTE 298 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 AL +ID+NS ++T +E+TAF TNLEAA+E ARQLRLRDLGGLIVIDFIDM +H Sbjct: 299 ALVSIDVNSGKSTGEKGVEDTAFKTNLEAAEEAARQLRLRDLGGLIVIDFIDMRDRKHNA 358 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 VE L+ A++ D+AR+ +S IS FGLLEMSRQR+ +L ++S CP C G G V+ E Sbjct: 359 EVEKTLKTALKADKARVNVSRISEFGLLEMSRQRIRQTLNQASTLECPHCDGRGKVKSVE 418 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 +++LS LR + A K EV +P+ +A YLLN KR ++ IE+ D + + Sbjct: 419 AMALSFLRKVHAAAAKGTIGEVVGGLPLEVAYYLLNRKRHELSQIESDYD-IEVTVKGKP 477 Query: 478 QMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 + +++ + A L E+ R P++ A A Sbjct: 478 SYLLNQMDLELIKR--------------EKPADELLLEKPAHGRSLPKEEAAQEPAAEGR 523 Query: 538 PPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPK 597 +P P A +A P +G E E + Sbjct: 524 KKKKKGKKPQEPEAAAHAEALPVAVVEEP----------------TGAELVVTVEGEPDE 567 Query: 598 AEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESR 657 + K R++ R K + E S AE Sbjct: 568 HKKKRRRKRKRGKGGAAEAGAEAATAQSAEADVELS----------------AAEAGTLP 611 Query: 658 QQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQ 717 + VTE+A A+ +Q ++ + +++ + + E + E Sbjct: 612 EPGPVTEQAAAAEGEQLQ--------HEAGEEVKKKRRRKRRRGKVGHEAQLHEPGAEFP 663 Query: 718 PRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTA 777 P+ + + + A VE AA+ + A E AQ Sbjct: 664 PQLEAFAAAGDIPVREVTPVITASAVSVEPGAAAKKGRKRGKARAEEPA--VSAGAAQVE 721 Query: 778 PEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEL 837 ++ + P+R+R + S ++ P +P A E Sbjct: 722 AITVPAEGVESAEPAAKPKRTRGGRKAKEASAEQGAAAVAAAAPGVAPEAPARTEAPAEP 781 Query: 838 ASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVE 897 A K R + A PV A + V + Sbjct: 782 AKAKRKPR-------------------------GAKAAKGAEAAPVPEAGEAKPAPAVKK 816 Query: 898 APVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADI 957 APV V E + + +A + P+ E + A A + P + A Sbjct: 817 APVAVTEGVEAPAKEKSAKGKSAKAPKAPKAKKEQEAATA-APEPSSAPAQDKAPAKARA 875 Query: 958 EEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEV 999 E + A PAAPV + E Sbjct: 876 PRASRKKEAPEGTGQASAAPAAPVEEKPKKPRAPRKKKEEAP 917 >UniRef50_Q1NUM8 Ribonuclease E and G n=2 Tax=Deltaproteobacteria RepID=Q1NUM8_9DELT Length = 715 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 211/495 (42%), Positives = 310/495 (62%), Gaps = 8/495 (1%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 ++LIN + EE R+AL++ ++ IES + K NIYKG++T +E +L+AAFVD G Sbjct: 223 KLLINTDEPEECRLALLENSKVEGFYIESVSRARIKGNIYKGRVTSVEANLQAAFVDIGL 282 Query: 63 ERHGFLPLKEIAREYFPANYS---AHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 E++GFL EI EY+ + I+D++++GQEV+V++ KE GNKG +LTT+ Sbjct: 283 EKNGFLSFNEIHPEYYQQEVDPETSWKNLKIQDMVKKGQEVLVEVVKEGSGNKGPSLTTY 342 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAE 178 +SL G +LVLMP + A GISR+I+ ++ R +L+E + L +PEG+G IVRTA + Sbjct: 343 LSLPGRFLVLMPGSDSA-GISRKIDDEEHRNKLREMVEGLNIPEGVGYIVRTASQEITKT 401 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 AL DL F L W I+K +S PAP L+++E N+I R RD+ DI EIL+D E Sbjct: 402 ALSQDLRFLLNLWSEIRKGGQSLPAPSLLYKEQNIISRFLRDHYTSDIREILVDEEDAAE 461 Query: 239 LARQHIAALGRPDFSSK-IKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 R + L +KL+ G P+F Y +E QIE FQ V LPSGGSIVI+ TE Sbjct: 462 QVRNFLQLLPASQRKKTTVKLHQGSQPIFHQYHVEKQIEEMFQPTVPLPSGGSIVINPTE 521 Query: 298 ALTAIDINSAR-ATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 AL AID+NS R +++ D EE+ F N+EAA+E+ARQLR+RDLGGLIV+DFIDM H Sbjct: 522 ALVAIDVNSGRTSSKDRDFEESIFIANMEAAEELARQLRMRDLGGLIVVDFIDMRSAAHT 581 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDN 416 R VE ++RE +++D+A++ S IS+FGL+++SRQ+++ L +S+ CP C G G +R Sbjct: 582 REVEKKVRECMKRDKAKVDFSKISKFGLMQISRQKMAAPLQTTSYKTCPYCEGRGLIRSV 641 Query: 417 ESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPN 476 E+L+LS LR I+ + ++V +P+ +A Y+LN+KR + +E G VI + Sbjct: 642 ENLALSHLRQIQTGMSRRRAKKVVCQLPMEVAQYILNKKREELLELEKEY-GAEIVIEVD 700 Query: 477 DQMETPHYHVLRVRK 491 M + +R Sbjct: 701 AAMLPADNRLDFIRD 715 >UniRef50_Q3A2X7 Ribonuclease E n=3 Tax=Bacteria RepID=Q3A2X7_PELCD Length = 926 Score = 563 bits (1451), Expect = e-158, Method: Composition-based stats. Identities = 300/945 (31%), Positives = 443/945 (46%), Gaps = 29/945 (3%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLINAT EE RVA+V+ L +LDIE G EQ K NIYK + R+E L+AAFVDYG Sbjct: 3 KKMLINATHPEEHRVAIVEDGILSELDIEISGKEQTKGNIYKAVVARVETGLQAAFVDYG 62 Query: 62 AERHGFLPLKEIAREYFP---ANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 +ER GFL + EI +F A RP I D+LR GQE++VQI KEERG KGAALTT Sbjct: 63 SERLGFLQIGEIHPAFFKEAEGRVEAGKRPRINDILRRGQEILVQIVKEERGTKGAALTT 122 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSA 177 ++SL G Y+VLMP++ GISR+IE + DR +L+E + SLE+PE MG IVRTAG + Sbjct: 123 YLSLPGRYMVLMPDSD-TKGISRKIEKESDRKKLRELMDSLEIPEEMGYIVRTAGSTQKR 181 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 L+ D+ + L+ + I+ ++S AP LI++ESN+++R+ RDY D+ E+L+D+ KV Sbjct: 182 TDLKRDVDYLLRLFNKIQSLSDSTKAPSLIYKESNLVIRSIRDYFSDDMDEVLVDDAKVS 241 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 AR + P+++ +KL+ P+F+ YQIE QIES + +V LPSGGSIVIDSTE Sbjct: 242 TEARDFFQEV-MPEYAELVKLHQERRPIFARYQIEDQIESIGKNKVMLPSGGSIVIDSTE 300 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 AL AID+NS + +E TA+ TNLEAA E ARQLRLRDLGGL+VIDFIDM +H R Sbjct: 301 ALVAIDVNSGKMASEQGVEATAYKTNLEAAVETARQLRLRDLGGLVVIDFIDMRDRKHIR 360 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 +E L+EA++ D+AR+ I IS+FGLLEMSRQR+ +L +S VCP C+G+G ++ E Sbjct: 361 DIEKTLKEAMKTDKARVTIGRISQFGLLEMSRQRIKSALAAASFEVCPHCNGSGKIKTIE 420 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 + SL LR I K V A VP+ +ASYLLN KR + AIE + D + D Sbjct: 421 AQSLGFLRRIHTGLAKGRIGRVEATVPLDVASYLLNNKRVELMAIEQKNDVSIHIKGCPD 480 Query: 478 QMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 M R+ EET +Y+ ++ + + Sbjct: 481 YMNGQGEIDFHKREKEETQATAYIEASQVMSETNNAQQDSTTDTEEKPAKRRRRPRRRRK 540 Query: 538 PPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPK 597 A TP + + + + PA A+ ++ + + E TE P Sbjct: 541 SSAATPVSEPSTLTTESEEQQPAATQDAAESQPMATDTEVAREVSEKTAEPVSTEATEPA 600 Query: 598 AEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESR 657 + +P++ +R R + + + E + +A+ + + Sbjct: 601 EKTAEPASAAEEQPQKPSRPRSRSGRRKPATKKTEAKP-EAKPEAKPEAKPEAKPEAKPE 659 Query: 658 QQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQ 717 + E +A+ + +A + + + K +A+ EAK E + E + Sbjct: 660 AKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKP---------EAKPEAKPEAKP 710 Query: 718 PRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTA 777 + + + K + EA E A+P + P + P Sbjct: 711 EAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPKAKP-------- 762 Query: 778 PEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEL 837 + E P+ +RR+P R + + + T + + Sbjct: 763 --KVESEAQSEAMPEAKPKTTRRAPSRSRTKTKTKTETAESNTSATGTETDTPSEKDEKP 820 Query: 838 ASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEE---VAG 894 A K + R + Q V P + A Sbjct: 821 AETKPPAKRARARRTTKPTAKTATQASDDVSPAEKDETAKATETAAPKRRTRARKTTAKT 880 Query: 895 VVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQE 939 V + E + + + ES A E Sbjct: 881 VKSGDDASSVSASNAEEAEKKKPTRRPRKPAAKAVEESKKAETSE 925 >UniRef50_A1HNZ2 Ribonuclease, Rne/Rng family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNZ2_9FIRM Length = 473 Score = 562 bits (1449), Expect = e-158, Method: Composition-based stats. Identities = 159/492 (32%), Positives = 256/492 (52%), Gaps = 20/492 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + +I + EE R+ALV+ L + +E NIYKGK+ + P ++AAF+D Sbjct: 1 MGKTIIASIMPEESRMALVEDGELVEYVLERSATGHLVGNIYKGKVKNVLPGMQAAFIDI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +++ +L + L GQ++++QI K+ G+KG TT + Sbjct: 61 GGDKNAYLYVGHADANA--------------GRLTVGQDILIQIVKDASGSKGPRTTTGL 106 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 L G Y VL P + G+SRRIE D + LA P+G+G+IVRTA G S L Sbjct: 107 MLPGRYAVLAPYSDGT-GVSRRIEDDAERKRLRQLADKVKPDGVGMIVRTAAAGCSETEL 165 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 D+ + W A+ A+ PAP L++++ ++ +R RDYL D+ E++IDN Sbjct: 166 ARDVEYLHNLWAALAARAKRSPAPALLYRDVDLAIRIVRDYLDDDVTEVVIDNRDAYGRV 225 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + L P +K+K Y +F HY I + + +REV L GG +VID TEALT Sbjct: 226 CDLLQHLA-PAALAKVKFYQYPEDIFVHYGIAADLNRLLKREVELACGGFLVIDQTEALT 284 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ID+N+ R + +T F N+EAA EIARQLRLRD+GG+I++DFIDM H++AV Sbjct: 285 VIDVNTGRFVGDTSLSDTVFRVNMEAAAEIARQLRLRDIGGIIIVDFIDMAKAEHKQAVL 344 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 L E +R+DR R +I ++ GL+E++R++ L + CP C+G G ++ E+++ Sbjct: 345 AFLAEKMRRDRTRSKILGLTSLGLVEITRKKGRQDLNSLMYSECPCCAGRGRIQSPETVA 404 Query: 421 LSILRLI-EEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 ++I R + A ++ + + L ++ + +E R+ + + M Sbjct: 405 INIRRHLRWAAAQRKLASRLVIQAHPQVVEIL--SRQGELARLE-RELARKLTLESAPAM 461 Query: 480 ETPHYHVLRVRK 491 Y +L ++ Sbjct: 462 HPECYSILYDKE 473 >UniRef50_Q1K0W4 Ribonuclease, Rne/Rng family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K0W4_DESAC Length = 952 Score = 562 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 272/823 (33%), Positives = 414/823 (50%), Gaps = 34/823 (4%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLINAT EE RVA+V+ L +LDIES GH+Q K NIYKG++ R+E L+AAF+DYG Sbjct: 20 KKMLINATLPEEDRVAIVEDGILTELDIESAGHQQTKGNIYKGEVIRVEQGLQAAFIDYG 79 Query: 62 AERHGFLPLKEIAREYFPANYS---AHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 A+R GFL + EI +P ++ RP I ++L+ GQ+++VQ+ KEERG KGAALTT Sbjct: 80 AQRPGFLQIGEIHPSLYPKRDDEGQSNRRPPITEILKRGQQILVQVVKEERGTKGAALTT 139 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSA 177 +SL G Y+VL+P + + GISR+I+ D R E+K L+SLELP+ MG I+RTA + + Sbjct: 140 EVSLPGRYMVLIPQSS-SRGISRKIDNDHVRKEIKNTLSSLELPDNMGYIIRTAAIDQPP 198 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 E L+ D + L + +I +E AP LI+QESN+++R+ RDY +I E+LID+ +V Sbjct: 199 EELKRDFDYLLNTYNSIVSHSEKAKAPALIYQESNLVLRSIRDYFSPEIDEVLIDDREVF 258 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 + AR A+ P++ +KL+ P+F+ YQIE QI V LPSGGSIV+D TE Sbjct: 259 QEARDFFKAV-MPEYMPLVKLHQERRPIFARYQIEEQISHLSSNTVNLPSGGSIVLDQTE 317 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 AL AID+NS + D+E TA NLEAA E+ARQLRLRD+GGLIVIDFIDM R+ R Sbjct: 318 ALVAIDVNSGKMGGEQDVEATAHRVNLEAAIEVARQLRLRDMGGLIVIDFIDMRQRRNAR 377 Query: 358 AVENRLREAVRQDRARIQISHIS-RFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDN 416 VE L+ A++ D+AR+ + IS +FGLLEMSRQR+ +LGE S+++CP C G+G +R + Sbjct: 378 EVEKALKNALKIDKARVTVGRISHQFGLLEMSRQRIKANLGEGSYNMCPHCQGSGRIRSD 437 Query: 417 ESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPN 476 ES S+++LR I+ K + + V + A+YLLN KR + +E R + I + Sbjct: 438 ESRSIALLRRIQAGTAKGHIEAVVCTAALDTANYLLNNKRRELYDLEQRYKLI-IEIKGD 496 Query: 477 DQMETPHYHVLRVR---------KGEETPTLSYMLPKLHEEAMALP----SEEEFAERKR 523 + V+ + ++ P + L + + LP +E+ E + Sbjct: 497 PGYLPEQVDIEFVKQSREQRQENRNDQGPLVDTDLSERANIEVVLPDASSAEQGDQENAQ 556 Query: 524 PEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFS 583 E+ + + A Sbjct: 557 KEEKDEEAPRKSSRRRRRSNRRRNDRNRRSEETNDETAADVSQSDADQDQDKAAQTQAPQ 616 Query: 584 GGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNR 643 E EQP ++ Q+ N + ++ + R ++ + Sbjct: 617 QSEAPSQPEQPPIAEKSSEPEPQENTPKSGENSEETDKAKAPRKPARRRPARKKAPAKQD 676 Query: 644 RQAQQQTAETRESRQQAEVT-----EKARTADEQQAPRRERSRRRNDDKRQAQQEAKALN 698 Q +Q ++E + ++ T E A + + + + R+ RR A EAK N Sbjct: 677 EQTEQPSSEENAAAGSSQPTVSTASEPAESDAKDEEKPKRRAPRRKPAATSAATEAKTEN 736 Query: 699 VEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEA 758 + +ET+ R R + +++ A + + Sbjct: 737 ATTEVTEETKPAPRRRRATRKTTTADTTTTAEAATETDKKSTEA-------SEKKAAPAK 789 Query: 759 PAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRS 801 R + P T PE + ++ ++ P R RR+ Sbjct: 790 RTTRRKTTTKAAPSSQTTEPESTQTDDTADK-PEKKPVRRRRT 831 Score = 46.3 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 59/462 (12%), Positives = 117/462 (25%), Gaps = 10/462 (2%) Query: 573 RFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNE------RRDTR 626 + +K E E E + E + D+ + +R + Sbjct: 488 KLIIEIKGDPGYLPEQVDIEFVKQSREQRQENRNDQGPLVDTDLSERANIEVVLPDASSA 547 Query: 627 SERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDD 686 + + + +EE + + R+ T DE A + ++ D Sbjct: 548 EQGDQENAQKEEKDEEAPRKSSRRRRRSNRRRNDRNRRSEETNDETAADVSQSDADQDQD 607 Query: 687 KRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVE 746 K Q + Q Q E+ P + +++ A Sbjct: 608 KAAQTQAPQQSEAPSQPEQPPIAEKSSEPEPQENTPKSGENSEETDKAKAPRKPARRRPA 667 Query: 747 ETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLR 806 A ++ P +E + + + + R RR P Sbjct: 668 RKKAPAKQDEQTEQPSSEENAAAGSSQPTVSTASEPAESDAKDEEKPKRRAPRRKPAATS 727 Query: 807 VSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVH 866 + + + ++ A+ + + D + E E++ Sbjct: 728 AATEAKTENATTEVTEETKPAPRRRRATRKTTTADTTTTAEAATETDKKSTEASEKKAAP 787 Query: 867 VQPMVTEVPVAAAI-EPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQ 925 + A + P + + P + + E A TEQ Sbjct: 788 AKRTTRRKTTTKAAPSSQTTEPESTQTDDTADKPEKKPVRRRRTTAKKATEKAAETTTEQ 847 Query: 926 PQVITES---DVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVV 982 P T + + + + +T E ETAE + Sbjct: 848 PAETTAEGAEETPKKKTTRRRTTTTKKAVNDTEKTAETGETAEKKPTRRRTTRKTTTEKA 907 Query: 983 AEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPR 1024 AE +T + + P RAP + V AP Sbjct: 908 AEEETPKKTARSKKSTEKAAEEGEEKPKRRAPRKKKVEPAPE 949 >UniRef50_B8FM65 Ribonuclease, Rne/Rng family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FM65_DESAA Length = 529 Score = 561 bits (1445), Expect = e-158, Method: Composition-based stats. Identities = 165/521 (31%), Positives = 261/521 (50%), Gaps = 39/521 (7%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M++ LI E RVALV+ L +L IE G +NIYKG++ R+ P ++AAFVD Sbjct: 1 MEKKLIINDAGFETRVALVEDGALAELYIERTGESDIVSNIYKGRVMRVLPGMQAAFVDI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSA----------------------------------HG 86 G ++ F+ + ++ ++ + Sbjct: 61 GLDQAAFIYVDDVVMDFPSDETGSPLIHEDEEDQEVILLDAEDDDDEIEEAARIIRPPRI 120 Query: 87 RPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD 146 RP+I+D++REGQE++VQ+ K G KGA +T+ I++ G +LVLMP G+SRRI Sbjct: 121 RPSIEDMIREGQEIMVQVAKSPIGKKGARVTSRITIPGRFLVLMPTTNHI-GVSRRITDS 179 Query: 147 -DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPF 205 +R LKE L + E G IVRT G E L ++ F + W+ + AP Sbjct: 180 GERNRLKEQLMEARV-EPFGYIVRTVCEGIGPEKLTHEVEFLTRVWKRVVHRYWQCSAPS 238 Query: 206 LIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPL 265 L+HQE + +R+ RD +++ ++ID+ + + + P ++ Y P+ Sbjct: 239 LLHQELSASLRSVRDLFTKEVDRLVIDSERGYREIQDFL-EPNMPGLRDAVQYYDRREPI 297 Query: 266 FSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLE 325 F YQ+E I +++V L SGG IVI+ TEAL +ID+N+ R GD+ ET TNLE Sbjct: 298 FDAYQLEGDISRLGRKKVWLKSGGYIVIEETEALVSIDVNTGRYVGKGDLSETILKTNLE 357 Query: 326 AADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLL 385 A EIA QLRLRD+GG+IVIDFIDM + + V L E +++DR+ + +S GL+ Sbjct: 358 ALKEIAYQLRLRDIGGIIVIDFIDMEKLEDRDKVYQVLVETLKKDRSTTNVLPMSEMGLI 417 Query: 386 EMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPV 445 +M+R+R ++ C C G G V +S+ +I R I ++ + Sbjct: 418 QMTRKRTRENINRQLSEPCAYCEGEGIVLSKKSICHNIYREILRQSYDIQGSRISVKAHP 477 Query: 446 PIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHV 486 IA +LL E+ V ++E R + +I + + + + Sbjct: 478 EIARFLLEEENITVLSLEQRIE-TPILIQADPALHIERFEI 517 >UniRef50_A7C082 Ribonuclease G and E n=1 Tax=Beggiatoa sp. PS RepID=A7C082_9GAMM Length = 518 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 166/496 (33%), Positives = 251/496 (50%), Gaps = 35/496 (7%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M ++ E RVA+++ L ++ IE +NIYKG++ R+ P ++AAFV+ Sbjct: 1 MSEEVLINVTSRETRVAMIENGILQEVIIERTSKRGLVSNIYKGRVCRVLPGMQAAFVEI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ER FL L +I + A + I ++L EG+ ++VQ+ K+ G KGA LT I Sbjct: 61 GLERAAFLHLSDIINTHLQAGIEPANQ--IDELLHEGKTLLVQVIKDPLGTKGARLTAQI 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEAL------------------------ 155 S+ Y+VL+P +P GIS RIE ++R LK+ Sbjct: 119 SIPSRYVVLLPYSPNMIGISTRIESPEERQRLKDIALQHTGMVEQDKLTETKDNNETVMM 178 Query: 156 -------ASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH 208 S+E + G I+RT L D+ F + W I++ L++ Sbjct: 179 HAVSSPKTSVESGKNYGFILRTVAEEAEENFLCADMDFLCRLWTDIQEKETKVKPCSLVY 238 Query: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSH 268 ++ ++++R RD I +I ID+ PD I+ YTGE PLF Sbjct: 239 RDLSLVLRTIRDLSGSSIDKIKIDSRDTHHQVVNFAKKF-IPDLVPHIEHYTGERPLFDL 297 Query: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328 Y I+ +I A + +V L SGG +VID TEA+T ID+N+ ++EET F TNLEAA Sbjct: 298 YSIDDEINKALEPKVPLKSGGYLVIDQTEAMTTIDVNTGGYVGSRNLEETIFRTNLEAAQ 357 Query: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388 IARQLRLR+LGG+I++DFIDM HQR V L + + +DR + IS IS+ GL+EM+ Sbjct: 358 AIARQLRLRNLGGIIILDFIDMKDEEHQRQVLRTLEKCLERDRTKSYISEISQLGLVEMT 417 Query: 389 RQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIA 448 R+R SL + CP C G GT++ E++ I R I + TQ+ + I Sbjct: 418 RKRTRESLEHTLCRTCPTCRGRGTIKTAETVCYDIFRDIVRFTQQFETQKFLVLASQKIV 477 Query: 449 SYLLNEKRSAVNAIET 464 +L ++ ++V +E Sbjct: 478 DTMLEDESNSVLELEE 493 >UniRef50_A4XJ17 Ribonuclease G n=7 Tax=Clostridia RepID=A4XJ17_CALS8 Length = 571 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 169/524 (32%), Positives = 282/524 (53%), Gaps = 6/524 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M+ +I E RVA+++ + L ++ IE + NIYKG + I P ++AAFV+ Sbjct: 1 MQSEIIVDVSFGETRVAVLEDKELVEIYIERNDQQSIVGNIYKGVVENILPGMDAAFVNI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +++ FL L +I R F + LR GQE++VQ+ KE KG +TT I Sbjct: 61 GQDKNAFLYLGDINRLEFGDTDEYYEIKTNPLALRCGQEIVVQVIKEAYDQKGPRVTTNI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIE-GDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 +L G YLVL+PN GIS+RIE ++RT LKE ++ P+GMGLIVRTA GKS E Sbjct: 121 TLPGRYLVLLPNTDYI-GISKRIEFEEERTRLKEIACKIK-PDGMGLIVRTAAEGKSEEV 178 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 L+ +L F W+ I++ ++ AP L++++ +++ +A RD + +I++ K Sbjct: 179 LRNELEFLRNLWQKIRQKSKES-APVLLYKDYDLVFKAVRDMFTNQVDRFVINDRKKYNK 237 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + ++ P SK++ + +F ++QIE ++ A + + L SGG IVID TEAL Sbjct: 238 IIEFLSTYA-PSLKSKVEYFNLATNIFEYFQIEQKLSKALSKRIWLKSGGYIVIDETEAL 296 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+N+ + D+ ET TNLEAA EIARQ+RLRD+GG+I+IDFIDM HQ+ V Sbjct: 297 TVIDVNTGKFVGKNDVSETILKTNLEAAVEIARQIRLRDIGGIIIIDFIDMKNPEHQKLV 356 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 + L+EA+++D+ + + I+ GL+EM+R+++ L CP C G+G + E++ Sbjct: 357 LDALKEALKRDKTKTVVVGITPLGLVEMTRKKVRQRLSCIMQSCCPYCEGSGKILSPETV 416 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 L +L+ IE ++ + + L + + ++ + + + + + Sbjct: 417 GLKVLKEIEWYFKNRVEEKFFVEINTKVCEVLRKGEVDRIKELQEKYKK-KVYLKASSNI 475 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKR 523 + + V+ + L L + E + E++F + Sbjct: 476 HINKFTICPVKDEDHYMALCGALSEGDEVLAFVEEEDKFNPKNA 519 >UniRef50_B8DIL9 Ribonuclease, Rne/Rng family n=3 Tax=Desulfovibrio RepID=B8DIL9_DESVM Length = 491 Score = 558 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 193/484 (39%), Positives = 282/484 (58%), Gaps = 14/484 (2%) Query: 3 RMLINATQQEELRVALVDGQ----RLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFV 58 RM I+ E++ VAL + ++ + +E + K NIY+G I ++ +L+AAFV Sbjct: 9 RMFISVLPGEQVEVALAEEGAKENQVKEYYVEMVHQAKTKGNIYRGIINNVDTNLQAAFV 68 Query: 59 DYGAERHGFLPLKEIAREYFPANYSA---HGRPNIKDVLREGQEVIVQIDKEERGNKGAA 115 +YGA+++GFL + E+ EY+ + A P ++ VL+ GQEV+VQ+ KE G+KGA Sbjct: 69 NYGADKNGFLQIDEVHPEYYNTPHDATKGKKYPLMQKVLKAGQEVLVQVVKEPTGSKGAF 128 Query: 116 LTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVG 174 LTT++S+ G +LVL P + G+SR++E ++R L+E L L G+G+IVRT G Sbjct: 129 LTTYLSMPGRFLVLTPGREQI-GVSRKVEDDEERGRLREMLEGLNPGPGLGVIVRTVSAG 187 Query: 175 KSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNP 234 S LQ DL F + W+ I+K AP LI++E ++ RA RDYL D+ E+ +D+ Sbjct: 188 TSKTTLQRDLQFLKRLWKDIRKKGTEESAPCLIYKEPDLASRAVRDYLSDDVAEVWVDDE 247 Query: 235 KVLELARQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVI 293 L ++ ++L P S +K+Y + L+ + I+ Q+E + REV LPSGG +V Sbjct: 248 HTATLIEEY-SSLLFPRKGSLVKVYKDQTRTLWERFGIQRQLEQIYSREVTLPSGGRLVF 306 Query: 294 DSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPV 353 D TEAL AIDINS + + + E A TN+EAA+ IA+QL+LRD+GG +VIDFI+M Sbjct: 307 DQTEALMAIDINSGKISGKTNFESMALRTNMEAAETIAQQLKLRDIGGQVVIDFIEMRDR 366 Query: 354 RHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 H R VE LR A++ DRAR + +SRFGLL++ RQR S + CP C G+G Sbjct: 367 NHWREVEKILRNAMKNDRARHDVGKMSRFGLLQVVRQRTGSSALSITMEACPCCKGSGLR 426 Query: 414 RDNESLSLSILRLIEEE--ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRC 471 R+ E SL LR I + AL T +A +LLN KR + +E RQ GV Sbjct: 427 RNMEWQSLQALREIHRQLRALPHGTVTFLFETGAEVAMHLLNHKRERLLDLE-RQFGVHL 485 Query: 472 VIVP 475 I P Sbjct: 486 DIRP 489 >UniRef50_UPI0001C430FE cytosolic axial filament protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C430FE Length = 503 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 156/498 (31%), Positives = 266/498 (53%), Gaps = 6/498 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M R + T E R A+V+ ++ +L +E P + N+Y G++ + P ++AAFVD Sbjct: 1 MNRKIYFNTATRERRAAIVENGQVVELLVERPAENRIVGNVYIGRVVNVLPGMQAAFVDI 60 Query: 61 GAERHGFLPLKEIAREYFPAN-YSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G E++GFL ++ + + NI + + +GQE++VQ+ KE G KG L+ Sbjct: 61 GREKNGFLYRDDLLSFHLSEEADEVKKQRNITEFVTKGQELLVQVTKEGFGQKGPRLSGV 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 +S+ G Y V MP G+SRR+ ++ E + L E G+I+RT E Sbjct: 121 VSMPGKYTVYMPEGGYV-GVSRRMGTEEERERLRGIGEDLLKENEGMIIRTVCEDAKPEV 179 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 ++ DL F WE++ + + + AP LIHQ S++I + D+ I EI+ID+ + Sbjct: 180 IEQDLHFLRTSWESVWQEGKEKRAPALIHQGSSLIEKMMLDFSLNQIDEIVIDDADDYQT 239 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + +A D K++LY + +FS + I+ +++ A +R++ L +G +++D TEAL Sbjct: 240 LKALLAPYS--DVHEKVRLYHDKENIFSVFGIDKELDKALRRQIWLKNGAYLIVDQTEAL 297 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+N+ + T D+++T TNLEAA EIARQLRLRD G+I+IDFIDM + V Sbjct: 298 TVIDVNTGKFTGKTDLQDTVRKTNLEAAKEIARQLRLRDTSGIIIIDFIDMKREEDREYV 357 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 + ++QDR + + ++ GL+EM+R+++ SL S CP C G+V +E+ Sbjct: 358 LEAFKRGLKQDRTKTNVVGLTGLGLVEMTRKKVRQSLQASLSKACPTCKEQGSVLSDEAQ 417 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 + I RLI E ++ + + +P +++ L K + +E G R +++PN M Sbjct: 418 AYKIERLIWEYRGMDH-EAILIELPSAVSAVLAGPKGELLKQLEE-ATGFRILLMPNKHM 475 Query: 480 ETPHYHVLRVRKGEETPT 497 + + + EE + Sbjct: 476 PEEAFAIRFMGDLEEAAS 493 >UniRef50_Q46977 RNase E (Fragment) n=11 Tax=Enterobacteriaceae RepID=Q46977_ECOLX Length = 537 Score = 556 bits (1432), Expect = e-156, Method: Composition-based stats. Identities = 537/537 (100%), Positives = 537/537 (100%) Query: 498 LSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKA 557 LSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKA Sbjct: 1 LSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKA 60 Query: 558 APATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRR 617 APATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRR Sbjct: 61 APATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRR 120 Query: 618 DRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRR 677 DRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRR Sbjct: 121 DRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRR 180 Query: 678 ERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAE 737 ERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAE Sbjct: 181 ERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAE 240 Query: 738 EAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRR 797 EAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRR Sbjct: 241 EAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRR 300 Query: 798 SRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVE 857 SRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVE Sbjct: 301 SRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVE 360 Query: 858 EQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEV 917 EQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEV Sbjct: 361 EQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEV 420 Query: 918 IAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQP 977 IAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQP Sbjct: 421 IAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQP 480 Query: 978 AAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFA 1034 AAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFA Sbjct: 481 AAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFA 537 >UniRef50_A5EVP9 Ribonuclease g n=16 Tax=Gammaproteobacteria RepID=A5EVP9_DICNV Length = 496 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 163/462 (35%), Positives = 255/462 (55%), Gaps = 8/462 (1%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 +L+N T E RVAL++ L+D+ IE NIYKGK+ R+ P +EAAF+D G Sbjct: 17 EILVNHT-PYETRVALLEDGLLHDVLIERERRRGIVGNIYKGKVQRVLPGMEAAFIDIGL 75 Query: 63 ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISL 122 ER GFL +K I+ P + I ++L EG+ ++VQ+ K+ G KGA LTT IS+ Sbjct: 76 ERAGFLHMKNIS---LPTEMVGKEQ-KISEILHEGESILVQVLKDPIGTKGARLTTEISI 131 Query: 123 AGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQ 181 + +LV +P G+S +I + R L+E + + G IVRTA A++ Sbjct: 132 SSRFLVFLP-KSHDIGVSIKIVSETQRQNLREMMHEFHRGQEGGFIVRTAIETADFWAMR 190 Query: 182 WDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELAR 241 D+ + + W++I A LI+ + + R RDY+ + ++++D+P+ Sbjct: 191 ADMQYLHRVWDSILTTYRESYASTLIYGDLPLYQRVLRDYISPQVKQVIVDDPEAYRAMA 250 Query: 242 QHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTA 301 Q + + +I LY G+ LF Y +E +IE A +R V L SGG ++ID TEA+T Sbjct: 251 QFAGNFLI-EMADRITLYDGDRTLFDRYGVEEEIERALKRRVDLKSGGYLMIDQTEAMTT 309 Query: 302 IDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVEN 361 ID+N+ E+T F TNLEAA IARQLR+R+LGG+I++DFIDMT HQ++V + Sbjct: 310 IDVNTGGFVGKSSQEDTIFKTNLEAAKAIARQLRIRNLGGIIMLDFIDMTSTEHQQSVVD 369 Query: 362 RLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSL 421 L A+ D+++ IS IS G++EM+R+R SL + CPRCSG G V+ E++ Sbjct: 370 ALLNALAGDKSKYTISPISPLGIIEMTRKRTRESLKQVMCETCPRCSGRGYVKTTETIVY 429 Query: 422 SILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIE 463 + R + EA + + + I ++ E+ A + ++ Sbjct: 430 ELFRDLMREAREYAPKGMTVIGNPDFIEFIREEESMAFSDLQ 471 >UniRef50_Q0ABM4 Ribonuclease G n=2 Tax=Proteobacteria RepID=Q0ABM4_ALHEH Length = 492 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 179/472 (37%), Positives = 267/472 (56%), Gaps = 8/472 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + ++ E RVALV+ L +L +E N+YKG++ R+ P ++AAF++ Sbjct: 1 MAQEILINVTPRETRVALVENGVLQELHLERARRRGLVGNLYKGRVVRVLPGMQAAFIEA 60 Query: 61 GAERHGFLPLKEIAR-EYFPANYSAHGRPN---IKDVLREGQEVIVQIDKEERGNKGAAL 116 G ER FL +IAR E P +GRP I ++L EGQEV+VQ+ K+ G+KGA L Sbjct: 61 GLERTAFLHASDIARAEPAPVGDEPNGRPPPLPIDELLTEGQEVVVQVLKDPIGSKGARL 120 Query: 117 TTFISLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEG-MGLIVRTAGVG 174 TT I++ YLVL P + RA G+S R+E +R L+ SL G MG+IVRTA Sbjct: 121 TTHITIPSRYLVLAPGS-RALGVSARVEDPAERERLRAIGESLLADRGDMGIIVRTAAEQ 179 Query: 175 KSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNP 234 + EAL+ D F L+ W++I + A A +H++ + VRA RD ++ + +D+ Sbjct: 180 VAEEALRADFDFLLRLWQSISERAAHASAGQRVHEDLPLTVRAMRDLAGSEVERVRVDSR 239 Query: 235 KVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVID 294 + P+ + +++ Y GE PLF Y IE +I A R V L SGG +VID Sbjct: 240 ENYLNVVSFCRRF-LPEMAPRVEYYPGERPLFDLYNIEDEILRALNRRVPLKSGGHLVID 298 Query: 295 STEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVR 354 TEA+T +D+N+ +EET F TNLEAA IARQLRLR+LGG+I++DFIDM Sbjct: 299 QTEAMTTVDVNTGAYVGHRTLEETIFKTNLEAAQAIARQLRLRNLGGIIIVDFIDMVEEE 358 Query: 355 HQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVR 414 H+R V L +A+++D A+ QIS +S GL+EM+R+R SL CP C G G+V+ Sbjct: 359 HKRQVLRALEKALQKDHAKTQISGVSALGLVEMTRKRTRESLEHQLCESCPTCGGRGSVK 418 Query: 415 DNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQ 466 E++S I R I EA + ++ + + + LL ++ +++ +E Sbjct: 419 SAETVSYEIFREILREARQFESRRLVVLAATEVVDLLLEDESTSLAQLEEFI 470 >UniRef50_C6MTB8 Ribonuclease, Rne/Rng family n=1 Tax=Geobacter sp. M18 RepID=C6MTB8_9DELT Length = 937 Score = 554 bits (1428), Expect = e-156, Method: Composition-based stats. Identities = 220/502 (43%), Positives = 318/502 (63%), Gaps = 9/502 (1%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLINA EE RVA+V+ RL DLD+E G+EQ + NIYKG + R+E L+AAFVD G Sbjct: 3 KKMLINALHAEEARVAIVEDGRLVDLDVEIAGNEQTRGNIYKGVVVRVEQGLQAAFVDIG 62 Query: 62 AERHGFLPLKEIAREYFP-----ANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL 116 ++ GFL + E+ E + H RP I++VLR GQE+IVQ++K ER NKG+AL Sbjct: 63 LKKLGFLQMGELHPENWKWRDDIPEDQRHRRPRIQEVLRRGQELIVQVEKGERDNKGSAL 122 Query: 117 TTFISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGK 175 TT+ SL G Y+VLMP + A GISR++E + +R +LKE +A + +PEG G I+RT +G+ Sbjct: 123 TTYASLPGRYMVLMPGSDSA-GISRKVESEGERKKLKEIIAEMTIPEGYGYIIRTEAMGR 181 Query: 176 SAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPK 235 + + LQ DL + +E I++ + +I+QES +I+R RDY DI E+L+D+ Sbjct: 182 TRDELQKDLDNLIALYEGIREKGLAMKGAGMIYQESALIIRTIRDYFSADIDEVLVDSKD 241 Query: 236 VLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDS 295 V + R + + P F +K++ + P+FS YQ+E QI+ ++++V L SGGSI I+ Sbjct: 242 VFKDVRDALKEID-PAFEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSIFIEP 300 Query: 296 TEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRH 355 TEAL +ID+NS ++T +E+TAF TNLEAA+E ARQLRLRDLGGLIVIDFIDM +H Sbjct: 301 TEALVSIDVNSGKSTGEKGVEDTAFKTNLEAAEEAARQLRLRDLGGLIVIDFIDMRDRKH 360 Query: 356 QRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRD 415 VE L+ A++ D+AR+ +S IS FGLLEMSRQR+ +L ++S CP C G G V+ Sbjct: 361 NSEVEKTLKSALKADKARVNVSRISEFGLLEMSRQRIRQTLNQASTLECPHCDGRGKVKS 420 Query: 416 NESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVP 475 E+++LS LR + A K EV +P+ +A YLLN KR ++ IE D + + Sbjct: 421 VEAMALSFLRKVHAAAAKGTIGEVVGSLPLEVAYYLLNRKRHELSQIENDYD-IEVTVKG 479 Query: 476 NDQMETPHYHVLRVRKGEETPT 497 + +++ + Sbjct: 480 KPSYLLNQMELELIKREKLPQE 501 >UniRef50_B8GWM7 Ribonuclease E n=6 Tax=Caulobacteraceae RepID=B8GWM7_CAUCN Length = 898 Score = 551 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 217/550 (39%), Positives = 299/550 (54%), Gaps = 60/550 (10%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEA------ 55 K+MLI+A EE RV +VDG R+ + D ES +Q + NIY K+TR+EPSL+A Sbjct: 3 KKMLIDAAHAEETRVVVVDGTRVEEFDFESQTRKQLRGNIYLAKVTRVEPSLQAAFIEYG 62 Query: 56 -------AFVDY-------------------------------------------GAERH 65 AF + G +R Sbjct: 63 GNRHGFLAFNEIHPDYYQIPVADREALMRDDSGDDEDDTPISRRASGGDDEDDVNGGDRA 122 Query: 66 GFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGS 125 ++ E + I++V+R Q ++VQ+ KEERGNKGAALTT++SLAG Sbjct: 123 VDDDDDDVEEELARRKRRLMRKYKIQEVIRRRQIMLVQVVKEERGNKGAALTTYLSLAGR 182 Query: 126 YLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDL 184 Y VLMPN R GGISR+I DR LK + SL++P+GMGLIVRTAG ++ ++ D Sbjct: 183 YGVLMPNTARGGGISRKITAVTDRKRLKSVVQSLDVPQGMGLIVRTAGAKRTKAEIKRDY 242 Query: 185 SFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHI 244 + L+ WE I++ AP LI++E +++ RA RD +D+ I ++ + AR + Sbjct: 243 EYLLRLWENIRENTLHSIAPALIYEEEDLVKRAIRDMYDKDLDGIWVEGDAGYKEARDFM 302 Query: 245 AALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDI 304 L P + K+ Y PLF +IE + + V L SGG +VI+ TEAL AID+ Sbjct: 303 RML-MPSQAKKVFNYRDPTPLFVKNKIEDHLAQIYSPVVPLRSGGYLVINQTEALVAIDV 361 Query: 305 NSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLR 364 NS +ATR +IE TA TN EAA+E ARQLRLRDL GLIVIDFIDM ++ R VE L+ Sbjct: 362 NSGKATRERNIEATALKTNCEAAEEAARQLRLRDLAGLIVIDFIDMDEAKNNRTVEKVLK 421 Query: 365 EAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSIL 424 +A++ DRARIQ+ IS FGL+E+SRQR + E + HVC C GTG VR ES +L+ L Sbjct: 422 DALKDDRARIQMGKISGFGLMEISRQRRRTGVLEGTTHVCEHCEGTGRVRSVESSALAAL 481 Query: 425 RLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHY 484 R +E EALK + V V + Y+LNEKR + + T G+ +V +D + Sbjct: 482 RAVEAEALKG-SGSVILKVSRSVGLYILNEKRDYLQRLLTTH-GLFVSVVVDDSLHAGDQ 539 Query: 485 HVLRVRKGEE 494 + R GE Sbjct: 540 EIERTELGER 549 >UniRef50_B0VJP4 Ribonuclease G n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJP4_9BACT Length = 505 Score = 550 bits (1417), Expect = e-154, Method: Composition-based stats. Identities = 152/511 (29%), Positives = 261/511 (51%), Gaps = 23/511 (4%) Query: 1 MKR-----MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEA 55 MK+ +I E RVA+++ RL +L +E + NIYKG + + P + A Sbjct: 1 MKKDSYNTEIIVNVHPLEKRVAVLEDSRLVELFVERREQQNIVGNIYKGIVKDVLPGMGA 60 Query: 56 AFVDYGAERHGFLPLKEIAREYFPANYSAHGRPN--------IKDVLREGQEVIVQIDKE 107 AF++ G ER FL +I ++ +A R I +L+ GQE++VQ+ K Sbjct: 61 AFIEIGLERTAFLHYSDIVMDFLDIYENALPRTKVNPEDSSQIDKLLKPGQEIVVQVHKG 120 Query: 108 ERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALASLELPEGMGL 166 G+KGA LT IS+ G YLVL PN + +SR+I +R+ ++ L+ ++ P G GL Sbjct: 121 PIGSKGARLTGQISIPGKYLVLFPNKDKI-AVSRKIYSQAERSRIRNLLSGIKDP-GYGL 178 Query: 167 IVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDI 226 IVRT G + Q + +K W I+K + AP + +E+ + RD +++ Sbjct: 179 IVRTEAEGCEEDDFQTEYKALIKTWHLIEKQIKYAKAPVCVFEENALENYLIRDLFGENV 238 Query: 227 GEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLP 286 ++ID+ + + + P+ + I++Y + P+F + IE +IE+ + LP Sbjct: 239 DRLVIDDKNFAKRIISQLTDIS-PELINNIEIYREDSPIFDAWGIEKKIETVLHSRIYLP 297 Query: 287 SGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVID 346 SGG+I I+ TEAL AID+N+ T + +ET TNLEAA EIARQ+RLRDL G+I+ID Sbjct: 298 SGGNIKIEQTEALVAIDVNTGSFTGKTNYDETVRKTNLEAAAEIARQIRLRDLSGVIIID 357 Query: 347 FIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPR 406 FIDM +++ V L++ +R+DRA+ ++ + GL+E++R+R+ +L + CP Sbjct: 358 FIDMVEEKYKNEVLEMLKKGLRRDRAKNKVYSFTELGLVEVTRKRMRNTLISNFSDPCPF 417 Query: 407 CSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQ 466 C+G+G + +S+ + I R + + + +V + +++ E Sbjct: 418 CNGSGRILSKDSVIMRIYRWLNRSDYFIKDKNLRIVVNPDLLNHIKQHNEDFTAYKEQ-- 475 Query: 467 DGVRCVIVPNDQMETPHYHVLRVRKGEETPT 497 + + + V + E+ + Sbjct: 476 ----IEFTSDPSIRIDQFKVYLLPGLEDITS 502 >UniRef50_B1H0J1 Ribonuclease G n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0J1_UNCTG Length = 488 Score = 547 bits (1410), Expect = e-154, Method: Composition-based stats. Identities = 159/492 (32%), Positives = 263/492 (53%), Gaps = 18/492 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 +K+ +I EE RVA++D +L++L IE E+ NIYKG++ I P+L + FVD Sbjct: 14 VKKEIIVNRTFEESRVAILDNGKLFNLFIERRESEKILNNIYKGRVKNIVPALNSLFVDI 73 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R +L + +I +E+ K++++ GQ+++VQ+ KE NKGA +T I Sbjct: 74 GFGRGAYLDVCDILKEHRSK----------KNMIKAGQDIMVQVYKEPIHNKGAKVTMAI 123 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 SL G LV MP + G+S+ I+ + LK A L+ G+I+RT + Sbjct: 124 SLTGRLLVYMPFSNNI-GVSKNIKDKHEYNRLKSMTAELKKDISGGIIIRTKAEKATKAE 182 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 ++ ++ + ++ W +I + + LIH++ ++ + DY D+ + ID+ K L+ Sbjct: 183 IKNEIKYLIRLWASITERFDDAKPMSLIHKDLGLVFQTVIDYFSDDVIFMRIDSQKELKD 242 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + + P+F +I Y P+F Y IE +I+ +V L SGG ++I E+L Sbjct: 243 VTDFV-EIVLPEFLDRIVFYDDRTPIFKKYGIEEEIKRLCSNKVWLSSGGYLIIQEAESL 301 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 AID+NS + T E+TA TNLEAA+EIARQLRLR++GG+IVIDFIDM ++R V Sbjct: 302 CAIDVNSGKFTAKSTQEDTAVITNLEAAEEIARQLRLRNIGGIIVIDFIDMKKASNRRKV 361 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 LR+A + D+A+I+I I+R GL+EM+R+R SL +CP C G V ES+ Sbjct: 362 LETLRKATKVDKAKIEIWPITRLGLIEMTRERKRKSLFSILGDICPVCHGLSFVLSKESI 421 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 +++ I++ + + + + + Y + +K +E GV I + ++ Sbjct: 422 FINVCDEIKQLKIDGYDGRIKIKLNIDVIEYFMKKK----ARLEELF-GVEFDIEASTEL 476 Query: 480 ETPHYHVLRVRK 491 Y +L + Sbjct: 477 LREEYKILYLNS 488 >UniRef50_C9KMZ9 Ribonuclease G n=2 Tax=Veillonellaceae RepID=C9KMZ9_9FIRM Length = 480 Score = 547 bits (1409), Expect = e-154, Method: Composition-based stats. Identities = 159/488 (32%), Positives = 257/488 (52%), Gaps = 14/488 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK +++N EE +AL++ L +++E H NIYKG++ + P ++AAFVD Sbjct: 1 MKSIIVNMV-PEETCMALLEDGELQAVEMERSSHSHLVGNIYKGRVQNVLPGMQAAFVDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++ FL + + + + R + GQ + +QI K+ G KG T I Sbjct: 60 GTGKNAFLYIGDGLPHETIESMPQNAR------IHIGQSLPIQIVKDAIGTKGPRATMHI 113 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G +VLMP G+SRRIE + A+A P+GMGLI+RT G+S ++L Sbjct: 114 SLPGRNVVLMPTAAYI-GMSRRIEDEGERARLHAIAERICPKGMGLIIRTVAAGQSEQSL 172 Query: 181 QWDLSFRLKHWEAIKKAAESR-PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 D+ + ++ WE+I + R L+++++++I+R RD DI E++IDN + + Sbjct: 173 AADVRYLVRLWESILARYKMRTKGSALLYRDADLIIRLVRDRFTADIDELVIDNEEAYQR 232 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 R + A P+ +I+ Y + P+F Y IE +IE REV L SGG +VID TEAL Sbjct: 233 VRSLVEA-NSPELVDRIRFYEAKTPIFKAYHIEEEIEKLGAREVELKSGGFLVIDKTEAL 291 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+N+ + ++ +T + TNLEAA EI +Q+RLRD+GG+I++DFIDM + + Sbjct: 292 TVIDVNTGKYVGKTNLGDTVYQTNLEAAAEILKQIRLRDIGGIIIVDFIDMEKESQKEEL 351 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 +RE V+ DR + I I+ GL+E++R++ ++ + CP C G G + E++ Sbjct: 352 LTYMREQVKHDRTKTNIVDITSLGLVEITRKKTRQNIDSIVYSECPICHGRGRIESPETV 411 Query: 420 SLSILRLIEEEALKENTQE-VHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 ++ I R I K + +E V +A L + A E G + Sbjct: 412 AIRISRDIRRMERKSHAREGYEIEVHETVAEELRANQLMMNLAAE---FGTDIKVTVKPG 468 Query: 479 METPHYHV 486 M +Y + Sbjct: 469 MHPENYTI 476 >UniRef50_Q1MQA2 Ribonucleases G and E n=2 Tax=Desulfovibrionaceae RepID=Q1MQA2_LAWIP Length = 666 Score = 547 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 197/480 (41%), Positives = 284/480 (59%), Gaps = 11/480 (2%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLI+ E++ VA+ +L++ IE H + + NIYKG I I+ +L+AAF++YG Sbjct: 177 KKMLISVIPGEQVEVAISSDGQLFEYFIEMNHHAKIRGNIYKGVINNIDANLQAAFINYG 236 Query: 62 AERHGFLPLKEIAREYFPANYSA---HGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 ++GFL + E+ EY+ + P I+ VL+ GQE++VQ+ KE GNKGA LTT Sbjct: 237 NTKNGFLQIDEVHPEYYLQPHEPTKLKKYPPIQKVLKAGQEILVQVVKEPTGNKGAFLTT 296 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSA 177 ++SLAG +LVL P + GISR++E ++ RT L+E + L+ G+G IVRT +G S Sbjct: 297 WLSLAGRFLVLTPGQEQI-GISRKVEDEEERTRLRELIKGLDPGSGLGAIVRTVSIGTSK 355 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 LQ DLSF + W I+K A + +P LI++E + RA RDYL DI EI +D+P+ Sbjct: 356 TTLQKDLSFLKRVWREIRKKATTEKSPCLIYEEPGLATRAVRDYLADDITEIWVDDPETK 415 Query: 238 ELARQHIAALGRPDFSSKIKLYTGE-IPLFSHYQIESQIESAFQREVRLPSGGSIVIDST 296 + ++ + L P + + LY PL+ H+++ QI REV +PSGG +V D T Sbjct: 416 QAIQE-VTTLLFPRKTKLVHLYQNNNEPLWEHFKLNKQIIQVHSREVIMPSGGRLVFDQT 474 Query: 297 EALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 EAL AIDINS R + E A+ TN+EAA IA+QLRLRD+GG IVIDFI+M H Sbjct: 475 EALMAIDINSGRIAGKTNFESMAYRTNMEAAATIAQQLRLRDIGGQIVIDFIEMKEPAHC 534 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDN 416 R VE L+ A++ DRAR + +S FGLL++ RQR+ S S CP C GTG R+ Sbjct: 535 RDVEKELQLAMKADRARHDVGKMSSFGLLQVVRQRIGSSAISISQETCPYCQGTGQRRNI 594 Query: 417 ESLSLSILRLIEEEALKENTQEVHAIVPV---PIASYLLNEKRSAVNAIETRQDGVRCVI 473 E ++ LR I ++ + T H + + YLLN KR+ + A+E G+ I Sbjct: 595 EWQAIQTLREIHKKMQQTVTAGKHEYIHTLDQELGLYLLNNKRNRLIALEQEF-GIHLDI 653 >UniRef50_C4PNX0 Ribonuclease E n=17 Tax=Chlamydiales RepID=C4PNX0_CHLTZ Length = 512 Score = 547 bits (1408), Expect = e-153, Method: Composition-based stats. Identities = 169/510 (33%), Positives = 283/510 (55%), Gaps = 19/510 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M+ ++ + +E+R A + +L+DL IE Q K NIY+G++T I ++++AF++ Sbjct: 1 MENDILLNIESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNILRNIQSAFINI 60 Query: 61 GAERHGFLPLKEIAR---------------EYFPANYSAHGRPNIKDVLREGQEVIVQID 105 +GF+ + ++ ++ I+++L+ V+VQ+ Sbjct: 61 DERENGFIHISDVLENSKKFEQMFDIDSDADHAEPQPEETSEAPIEELLKLDSPVLVQVV 120 Query: 106 KEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGM 164 KE G KGA LT+ IS+ G YLVL+PN+P G+SR+IE R +LK+ + S E+P+ M Sbjct: 121 KEPIGTKGARLTSNISIPGRYLVLLPNSPH-RGVSRKIEDPLMRDQLKQLIRSFEMPQNM 179 Query: 165 GLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQ 224 GLI RTA + S E L + L W++I + S P L+++E++++ +A + + Sbjct: 180 GLICRTASISASTETLINEAQNLLNTWQSILEKFYSPDHPSLLYEETDILKKAVMTCVDK 239 Query: 225 DIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVR 284 +LID+ + ++ + PD + KI+ Y +P+F + IE +I+ A +R++ Sbjct: 240 SYKRLLIDDYATYQKCKRLLGKYS-PDTTVKIEYYRDSVPMFERFNIEKEIDRATKRKIW 298 Query: 285 LPSGGSIVIDSTEALTAIDINSARATRGGD-IEETAFNTNLEAADEIARQLRLRDLGGLI 343 L SGG + D TEA+ ID+NS R+T+ + +EET NLEAA+EIARQLRLR++GGL+ Sbjct: 299 LSSGGYLFFDKTEAMHTIDVNSGRSTQLENGVEETLVQINLEAAEEIARQLRLRNIGGLV 358 Query: 344 VIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHV 403 +IDFIDM ++QR V RL+E ++ D AR I +S FGL+EM+RQR SL ++ Sbjct: 359 IIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQTLFTT 418 Query: 404 CPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIE 463 CP C+G ++ +ES+ + I R +++ + + +V IA Y+ E+ Sbjct: 419 CPYCNGNAIIKTSESILIEIERDLKKIIKHKEHTNLCLVVHPEIAHYMKQEQDDVELIRL 478 Query: 464 TRQDGVRCVIVPNDQMETPHYHVLRVRKGE 493 +Q + I +D + HY + GE Sbjct: 479 AKQLKAKLQINTSDSIHLNHYQFFSLITGE 508 >UniRef50_C0R3W8 Ribonuclease, Rne/Rng family protein n=9 Tax=Wolbachia RepID=C0R3W8_WOLWR Length = 590 Score = 545 bits (1403), Expect = e-153, Method: Composition-based stats. Identities = 198/572 (34%), Positives = 313/572 (54%), Gaps = 56/572 (9%) Query: 2 KRMLI--NATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 KR+L+ N+T E+RVAL ++ + + E +Q + NIY I RIEPSL+A F++ Sbjct: 6 KRLLLIENSTCSNEVRVALSVNNKVVEFEQEFKEKKQLRGNIYVAYIKRIEPSLQAVFIE 65 Query: 60 YGAERHGFLPLKEIAREYFPANYSA----------------------------------- 84 YG + GFL EI+ +YF Sbjct: 66 YGKNKQGFLSFSEISLDYFNIPEKEKETIFESYSNDDYTEKGNDTIANVSSDSAASKNVN 125 Query: 85 ------------HGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPN 132 + + ++DV+ Q+V+VQ+ KEERGNKGA+ TT+I+L G Y V MPN Sbjct: 126 ESGSGFVREVPLYKKYKLQDVISVNQKVLVQLTKEERGNKGASFTTYITLVGRYCVFMPN 185 Query: 133 NPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHW 191 + GG+SRRIE + R +LKE L+S+ LP+ GLIVRT G GK+ + ++ D ++ W Sbjct: 186 SMSKGGVSRRIEDANVRKQLKEILSSINLPKRSGLIVRTVGSGKNKKEIEQDYNYLSSLW 245 Query: 192 EAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPD 251 ++I+K A S P LI+ E++VI+R+ RD+ I E+++ + E RQ+ A Sbjct: 246 QSIQKNAFSVNVPSLIYNEADVIMRSVRDFCSDGI-EVIVSGKEAFEAVRQY-ANNALKG 303 Query: 252 FSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATR 311 + +LY G P+F++Y IE QI + V LPSGGS++I TEA +ID+NS + T Sbjct: 304 SKLRYRLYRGYAPIFTYYGIEDQISELYSNRVELPSGGSLIITLTEAFVSIDVNSGKMTG 363 Query: 312 GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDR 371 IEETA+ TN+EA EI+RQ+ LR L GLIV+DFIDM ++ RAVE+ +++A + D+ Sbjct: 364 EDSIEETAYRTNMEAVPEISRQVNLRGLSGLIVVDFIDMLKYQYCRAVESAIKQAFKDDK 423 Query: 372 ARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEA 431 A++Q S+I+ FGL+ SRQR+ P++ E + C C GTG V+ NE + SILR ++ A Sbjct: 424 AKVQFSYINDFGLMVFSRQRIKPNIQEINTTECLHCKGTGRVKSNEVIVSSILRDLQHIA 483 Query: 432 LKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRK 491 K + + + +++ N KR+ V+ IE + + + ++ ++ + +++ Sbjct: 484 NKNRNKSFDLVAHSAVIAHIFNNKRNTVSTIEKEFN-ITLNVSIDNSLDVNTFV---LKQ 539 Query: 492 GEETPTLSYMLPKLHEEAMALPSEEEFAERKR 523 G++ Y + + S EE + Sbjct: 540 GDDVNLNGYKPLQNSGYQVGDSSNEEADNSNK 571 >UniRef50_D0LZK2 Ribonuclease, Rne/Rng family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LZK2_HALO1 Length = 543 Score = 544 bits (1401), Expect = e-153, Method: Composition-based stats. Identities = 175/511 (34%), Positives = 269/511 (52%), Gaps = 31/511 (6%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 +L+ + E RV +V L + +ES NIY+G+++R+ P ++AAFVD G Sbjct: 4 NLLVVNAEGPETRVGVVHEGTLSEYFVESKRDRGIVGNIYRGRVSRVLPGMQAAFVDLGP 63 Query: 63 --ERHGFLPLKEIAREYFPANYSAHGRP------------------------NIKDVLRE 96 ER GFL + +I A P I+D+L+ Sbjct: 64 TVERAGFLYVADILGAADERKLFADEDPDSDDAPEGTAARLARSRKRANANRKIEDLLKA 123 Query: 97 GQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEAL 155 QEV+VQ+ KE G KGA LT ++SL G Y V MP + G+SRRI + +R L++ + Sbjct: 124 DQEVLVQVVKEPIGLKGARLTGYLSLPGRYNVFMPAVQQV-GVSRRISSEAERRRLRKIV 182 Query: 156 ASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIV 215 S+ G G IVRTA G + ++ D+ + L+ W I++ S P LI+ + ++++ Sbjct: 183 TSVGHKSG-GFIVRTAAEGVVDQEIRDDVDYLLRLWSEIQRRERSMKGPGLIYADLDLVL 241 Query: 216 RAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQI 275 R RD LR D EI+ID+ + + AR+ A P +IK Y G P+F HY +E+++ Sbjct: 242 RTIRDLLRADTKEIVIDDEEQYDRARKFTMAFLPPA-VDRIKQYRGRQPIFDHYGVEAEL 300 Query: 276 ESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLR 335 +A R V L SGGS+VID EALTAID+N+ D+EET N+EA E+ARQLR Sbjct: 301 RTALGRRVELKSGGSLVIDQGEALTAIDVNTGSFVGKRDLEETVTKNNIEACREVARQLR 360 Query: 336 LRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPS 395 LR++GG+IVIDF+DM +++ V + L +A+ DR+R ++ IS GL+EM+R+R S Sbjct: 361 LRNIGGIIVIDFVDMDKENNRKKVWDILNQALASDRSRCNLTKISELGLVEMTRKRTRES 420 Query: 396 LGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEK 455 L + CP CSG+G V+ +++ +LR + + +A L + Sbjct: 421 LNQLLTEACPTCSGSGVVKSTTTVAHEVLREVRRLGSHAEADSIDVECAPVVADLLDKYE 480 Query: 456 RSAVNAIETRQDGVRCVIVPNDQMETPHYHV 486 R ++ +E + + VI N Y V Sbjct: 481 RGYLDELEKKFQK-KVVIQSNGGYRPDQYQV 510 >UniRef50_A0LIP4 RNAse G n=22 Tax=Bacteria RepID=A0LIP4_SYNFM Length = 530 Score = 539 bits (1389), Expect = e-151, Method: Composition-based stats. Identities = 172/529 (32%), Positives = 274/529 (51%), Gaps = 38/529 (7%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M LI E RVALV+ ++ +L IE NIYKG++ ++ P ++AAFVD Sbjct: 1 MSAELIINGSAFETRVALVENGQVAELHIERSSDRGIAGNIYKGRVVKVLPGMQAAFVDI 60 Query: 61 GAERHGFLPLKEIAREYFPAN---------------------------------YSAHGR 87 E+ FL + +I + Sbjct: 61 DLEKAAFLYVSDIHHPMGDVEQLLLSTCEVEPDVEKVDSAREPGAPEFQDVLDLQRYYSS 120 Query: 88 PNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD- 146 I++ L+EGQE++VQ+ KE G+KGA +TT I+L G +LV MP G+SRRIE + Sbjct: 121 VPIEERLQEGQEILVQVAKEPIGHKGARITTHITLPGRHLVFMPTMDHV-GVSRRIENEV 179 Query: 147 DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFL 206 +R L+E + ++ P G IVRTA G E LQ ++ F +K W+ I++ ES P L Sbjct: 180 ERKRLREIMCEIK-PSHCGFIVRTAAEGAEPEKLQVEVDFLVKVWQNIQRRFESASVPSL 238 Query: 207 IHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLF 266 ++QE ++ +RA RD +++ ++ID+ + I P S I+LY G+ P+F Sbjct: 239 VYQELDITLRAVRDLFTKEVDRLVIDSRSEHKKITNFIETF-LPALQSSIELYEGDEPIF 297 Query: 267 SHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEA 326 Y IE +++ A +++ L SGG IVI+ TEALTA+D+N+ R ++EET TNLEA Sbjct: 298 DAYGIEMEVQRALSKKIWLKSGGYIVIEMTEALTAVDVNTGRYVGKRNLEETILKTNLEA 357 Query: 327 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLE 386 EIA QLRLR++GG+I+IDFIDM ++ V N L++A+ +D+++ I H+S GL+E Sbjct: 358 VKEIAYQLRLRNIGGIIIIDFIDMEKESNREKVCNALKDAMHKDKSKTNILHMSELGLIE 417 Query: 387 MSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVP 446 M+R+R S+G+ C C G G ++ +++ ILR +E E Q + + Sbjct: 418 MTRKRTRESIGQVLCEPCFYCEGEGYLKSRQTVCYEILRELEREKRDLYGQNIMVLAHPE 477 Query: 447 IASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEET 495 +A+ +E R + +E R ++ + Y + + + Sbjct: 478 VAARFCDEDRGPLERVEETLHA-RIMVKGDPGFHLEQYEIAPLESEKRV 525 >UniRef50_C1A932 Ribonuclease G n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A932_GEMAT Length = 520 Score = 538 bits (1387), Expect = e-151, Method: Composition-based stats. Identities = 165/524 (31%), Positives = 268/524 (51%), Gaps = 25/524 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKR ++ E RVA+++ +L +L ++ P + ++Y GK+ + P ++AAFV+ Sbjct: 1 MKREILVNATPRETRVAIIEDGQLVELLVDRPDARRMVGDVYLGKVEAVLPGIQAAFVNI 60 Query: 61 GAERHGFLPLKEIARE--------------------YFPANYSAHGRPNIKDVLREGQEV 100 G E+ FL ++ E I+D+L+ GQE+ Sbjct: 61 GTEKSAFLHAADVVVEDAQVSDDDDDDEDESGEESGGGGGRRGRREVRPIQDLLKRGQEI 120 Query: 101 IVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLE 159 +VQI KE KG +T +SLAG +LV MP + G+SR+I+ +R L+ + + Sbjct: 121 LVQITKEPISTKGPRVTAQVSLAGRFLVYMPFASKV-GVSRKIDERSERQRLRAMVGEML 179 Query: 160 LPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFR 219 + G+IVRT + E + +L + +W+ IK+ + AP L+H+E+NV R Sbjct: 180 PDDAGGVIVRTVSEDATKETFERELQTLINNWKRIKRKTQFTRAPSLVHRETNVTRGLVR 239 Query: 220 DYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAF 279 D + + +D+ +V +++ + P+ ++KLY +PLF IE++I F Sbjct: 240 DLFSAKVERVQVDSKQVYNEITEYLQGIA-PELVERVKLYEENVPLFDKEGIETEIRDLF 298 Query: 280 QREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDL 339 +R LPSGG ++ + TEAL +ID+NS R T D E+T TN EAA EIARQLRLRD+ Sbjct: 299 KRRCDLPSGGYLIFEPTEALVSIDVNSGRYTGKRDPEKTILKTNTEAAREIARQLRLRDV 358 Query: 340 GGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGES 399 GG+IV DFIDM ++ V + LR + +DRAR + +S GL+EM+RQR+ S S Sbjct: 359 GGIIVCDFIDMETQSNRDKVLHELRTHLGRDRARTKAFAVSDLGLVEMTRQRVRQSHWHS 418 Query: 400 SHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAV 459 CP CSGTG V E++ R + A + + V + +A ++L ++ + Sbjct: 419 MTEGCPTCSGTGRVFTPETIVRRTERAVRRMAAEGRKEPVVLRLHPEVALHVLEQEHDFM 478 Query: 460 NAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLP 503 +E + G + + ++ P L +R + T Y L Sbjct: 479 KRLE-KMAGFTLELRDDPLLK-PDEIKLVMRGAQRDVTQQYALA 520 >UniRef50_C6ADR1 Ribonuclease E n=5 Tax=Rhizobiales RepID=C6ADR1_BARGA Length = 876 Score = 536 bits (1380), Expect = e-150, Method: Composition-based stats. Identities = 216/732 (29%), Positives = 355/732 (48%), Gaps = 23/732 (3%) Query: 45 KITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQI 104 I E +L A D + + ++I E + I++V++ Q ++VQ+ Sbjct: 143 IIDNTEEALNA---DISYDEIEMVGAEDIREELPIYQRKQGRQYKIQEVIKRRQILLVQV 199 Query: 105 DKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEG 163 KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I DR LKE + L +P+G Sbjct: 200 IKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNVQDRKRLKEIVKELAVPKG 259 Query: 164 MGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLR 223 MG+I+RTAG ++ ++ D + ++ W+ I+ AP L+H+ESN+I R+ RD Sbjct: 260 MGVILRTAGANRTKAEIKRDYEYLMRLWDTIRTLTLESTAPCLVHEESNLIKRSIRDLYN 319 Query: 224 QDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREV 283 ++I EIL+ + A+ + L P + ++ Y P+F+ IE Q++ Q +V Sbjct: 320 KNISEILVSGDQGYREAKDFMRML-MPSHAKVVQPYRDPTPIFARNNIEIQLDKMLQPQV 378 Query: 284 RLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLI 343 L SGG +VI+ TEAL AID+NS R+T+ +E+TA TNLEAA+E+ARQLRLRDL GLI Sbjct: 379 SLKSGGYLVINQTEALVAIDVNSGRSTKEFSVEKTALQTNLEAAEEVARQLRLRDLAGLI 438 Query: 344 VIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHV 403 VIDFIDM R+ + VE +L++ ++ DRARIQ+ HIS FGLLEMSRQR+ S+ ES+ Sbjct: 439 VIDFIDMLEERNVKLVEKKLKDCLKNDRARIQVGHISHFGLLEMSRQRIRISVLESTTQP 498 Query: 404 CPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIE 463 CP C+GTG +R S++L ++R IEE L + + PV A Y+LN KR+ + +E Sbjct: 499 CPHCAGTGNIRSESSIALHVMRSIEEYLLHNSQYNIIVRTPVATALYVLNHKRNILVNLE 558 Query: 464 TRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKR 523 TR + I +D + T H + + E S E ++ E E E Sbjct: 559 TRF-KLNISIEADDSIGTQHLVISKGSIAESISRPSLEDVNKQEIEDSVFIESESIENPS 617 Query: 524 P----EQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALK 579 P ++ + + ++ F ++ Sbjct: 618 PIGTNQKRRRKNRHDEITDHSLSNVHKKEDTLSNDSYRRGRRRGRRGGRRNQDNSFHQIR 677 Query: 580 ALFS------GGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGS 633 ++ + + K P + + + + N + +++ + Sbjct: 678 IPYAEPVGDFAKQALAEIKAAHRKHRVSPAKSFELEETKNNTQALDIQQQGESKKIDTSI 737 Query: 634 DNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQE 693 ++ R+ + + Q + + V E+ ++ + +++ + DK + E Sbjct: 738 KPKKRKTRSSKVVENQLSLDNDQN----VVEQKSLEEKPKTSSVRKAKTKKADKSIHKVE 793 Query: 694 AKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEP 753 K ++S + T ++ + Q+ L ++ E E +E+T+ Sbjct: 794 DKTFENSKKSTRGTRKKSSSKETTQ--IQKVLEKETIIEMEEVVET-SPSQIEKTINQPV 850 Query: 754 IVQEAPAPRTEL 765 +V P ++ Sbjct: 851 VVSSTPNDSSKT 862 Score = 108 bits (269), Expect = 1e-21, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 54/77 (70%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+A+ EE RV +V G ++ +LD ES +Q K NIY +ITR+EPSL+AAFV+YG Sbjct: 3 NKMLIDASHPEETRVVVVHGNKIEELDFESEHRKQLKGNIYLARITRVEPSLQAAFVEYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLTFSEIHPDYY 79 >UniRef50_A8L1W0 Ribonuclease, Rne/Rng family n=25 Tax=Actinobacteridae RepID=A8L1W0_FRASN Length = 1427 Score = 535 bits (1379), Expect = e-150, Method: Composition-based stats. Identities = 151/419 (36%), Positives = 242/419 (57%), Gaps = 7/419 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 ++R +I + ++A+++ L + + N+Y G++ + S+EAAFVD Sbjct: 776 VERRMIVRHNGDRTQIAVLEDGVLVEHFVTRASSASYAGNVYLGRVQNVLASMEAAFVDI 835 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + A+ I+ VL+ GQ V+VQ+ K+ G+KGA LT+ + Sbjct: 836 GKGRNAVLYAGEVN---YDASGLDGRPRKIEQVLKSGQSVLVQVSKDPIGHKGARLTSQV 892 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLV +P+ A GISR++ +R LK L + PE G+IVRTA G S L Sbjct: 893 SLPGRYLVYVPDGQNA-GISRKLPDTERARLKSILKKI-TPENGGVIVRTAAEGASEAEL 950 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 + D+ + WE I++ A+ AP L++ E +++VR RD +D E+++ Sbjct: 951 ERDIERLVAQWEDIQRKAQKASAPSLLYGEPDLVVRVIRDIFNEDFTELVVQGSHEAATV 1010 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++ + PD +++ Y G +F+ ++++ Q+ A R+V LPSGGS+VID TEA+T Sbjct: 1011 EGYVDTVA-PDLRDRVRRYVGTGDVFAEHRVDEQLAKALDRKVWLPSGGSLVIDRTEAMT 1069 Query: 301 AIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 ID+N+ + T GG++EET NLEAA+EI RQLRLRD+GG+IVIDFIDM ++ V Sbjct: 1070 VIDVNTGKFTGKGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELV 1129 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 RL E + +DR R Q++ ++ GL++M+R+R+ L E+ C C+G G + +S Sbjct: 1130 LRRLTECLGRDRTRHQVAEVTSLGLVQMTRKRVGQGLLEAYSEPCAHCNGRGVLVHLDS 1188 >UniRef50_A6GBN9 Ribonuclease G n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GBN9_9DELT Length = 507 Score = 535 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 171/506 (33%), Positives = 262/506 (51%), Gaps = 16/506 (3%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 ++INA E RVAL++ L +L IE N+YKGKI R+ P ++AAFVD G + Sbjct: 6 IVINADGPE-TRVALIENGILTELFIERERERGIVGNVYKGKILRVLPGMQAAFVDIGED 64 Query: 64 RHGFLPLKEIAREYFPANYS----------AHGRPNIKDVLREGQEVIVQIDKEERGNKG 113 + FL +IA + NI D++ GQE++VQ+ K+ KG Sbjct: 65 KAAFLYAGDIASQKPGEKVDKVDKNGVPKRGGKVSNIADLVHPGQEILVQVVKDPISTKG 124 Query: 114 AALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGV 173 A +TT+ISL G +V MP GISRRI + + L P+G G IVRT Sbjct: 125 ARITTYISLPGRNVVFMPTVSHV-GISRRINSERQRRRLRRLVDEMRPKGSGFIVRTVAR 183 Query: 174 GKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDN 233 S+ ++ + + ++ W IK AP L++++ ++++R RD L D +++D+ Sbjct: 184 HASSAQVRAGMDYLIRLWANIKANERLHRAPVLLYRDLDLMLRVVRDNLSPDYARVIVDD 243 Query: 234 PKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVI 293 E ++ A P+++ +I+L++G +F Y IE +I+ A +R+V L SGGS+V Sbjct: 244 RAAYERLKRF-ADAFLPEYADRIELFSGRQGIFDSYGIELEIDRALERKVELKSGGSLVF 302 Query: 294 DSTEALTAIDINSARATR--GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMT 351 D EALTAID+N+ + G +E+T TNLEAADEIA QLRLR++GGLI+IDFIDM Sbjct: 303 DQGEALTAIDVNTGKFVGSKGKTLEQTITQTNLEAADEIAEQLRLRNVGGLIIIDFIDMD 362 Query: 352 PVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTG 411 ++R V RL++A+R+DRA+ I+ IS GL+EMSR+R SL C C G G Sbjct: 363 RESNRRKVYRRLQDALRRDRAKAHITKISEMGLVEMSRKRTRESLERRLAITCEVCGGKG 422 Query: 412 TVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRC 471 + ++ ILR I E + + +A + +RSA++ R Sbjct: 423 YHKSPSTICYEILRQIRREGEHLAGEVISVTAHPDVAELMNGAERSALDHAVKRVHK-AI 481 Query: 472 VIVPNDQMETPHYHVLRVRKGEETPT 497 + + + + P Sbjct: 482 DVQGRKGFHPEKFEIRGKKARRANPQ 507 >UniRef50_A8MHL2 Ribonuclease, Rne/Rng family n=2 Tax=Alkaliphilus RepID=A8MHL2_ALKOO Length = 501 Score = 535 bits (1377), Expect = e-150, Method: Composition-based stats. Identities = 174/482 (36%), Positives = 284/482 (58%), Gaps = 8/482 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M +++++ E R+A+++ + L +L IE +++ NIYKG++ + P ++AAFVD Sbjct: 1 MNQIIVDVGISEN-RLAILEDEELVELYIERRNNKRIVGNIYKGRVVNVLPGMQAAFVDI 59 Query: 61 GAERHGFLPLKE-IAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G E++ FL +K+ + +EYF +IKDV+++GQE+IVQ+ KE +KGA +TT Sbjct: 60 GLEKNCFLYVKDALGQEYFNKKDFVDREISIKDVVKQGQEIIVQVIKEPIADKGARVTTN 119 Query: 120 ISLAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAE 178 I+L G YLVLMP+ G+SR+I ++R LK + +L+ PE MG+I+RT GKS + Sbjct: 120 ITLPGRYLVLMPDTQYI-GVSRKIGSAEERERLKAEIEALK-PENMGVILRTVAEGKSKD 177 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 + D+ F LK W+ I+K + AP LI+++ ++I + RD ++I E +I++ + Sbjct: 178 DFREDIKFLLKLWQKIEKEKKLGFAPRLIYKDFDLIDKTIRDTFSKNIHEFIINDENEYK 237 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 A + L P+ ++ + +F HY+IESQI A +R++ L SGG IVIDSTEA Sbjct: 238 SAMDLVELL-SPNLKDRLSYFEESHDIFRHYKIESQIHKALERKIWLKSGGYIVIDSTEA 296 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 LT +D+N+ + D+E+T TNLEAA EIA+QLRLRD+GG+I+IDFIDM+ ++ Sbjct: 297 LTVVDVNTGKYVGITDLEDTVLKTNLEAAVEIAKQLRLRDIGGIIIIDFIDMSNEEDEQK 356 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 V N L +++ +DR + +I ++ GL+EM+R+++ L C C G+G + + + Sbjct: 357 VLNLLEKSLNKDRTKSKILGMTELGLVEMTRKKVRQKLESVMQKKCHCCDGSGKLLNEYT 416 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 L + + AL + + V V A + E+ IE V+ IVPN Sbjct: 417 LLQRFEKEMRRIALHTSCEAVIFEVHP-TAFKIFEEEFITRKEIEG-LTKVQSFIVPNPS 474 Query: 479 ME 480 + Sbjct: 475 LN 476 >UniRef50_D2NSV3 Ribonuclease G and E n=2 Tax=Rothia mucilaginosa RepID=D2NSV3_9MICC Length = 1288 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 215/871 (24%), Positives = 367/871 (42%), Gaps = 36/871 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R ++ + +++ +++ L + + + N+Y GK+ + PS+EAAFVD Sbjct: 417 VDRQMLVRQKDGRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDI 476 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + + + I++ L+ G V+VQ+ K+ G+KGA LT+ + Sbjct: 477 GRGRNAVLYAGEVNWDVTGLDGAPR---KIENALKPGDSVLVQVTKDPIGHKGARLTSQV 533 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G +LV +P GISR++ +R LK+ L +LPEG G+IVRTA G S E L Sbjct: 534 SLPGRFLVYVPGGSMT-GISRKLPDTERARLKKILKD-KLPEGAGVIVRTAAEGASEEEL 591 Query: 181 QWDLSFRLKHWEAIKKAAESRP--APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 D++ WE I++ A+SR AP +++QE +++++ RD +D +++ + Sbjct: 592 THDINRLRAQWEEIQEKAKSRKVLAPEMLYQEPDLMIKTVRDVFNEDFTAMIVQGENAWD 651 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 ++ + PD S+++ + G+ LF HY+I Q+ A R+V LPSGGS+VID TEA Sbjct: 652 SIEAYVTYVA-PDLVSRLQQWDGDDDLFDHYRINEQLAKALDRKVYLPSGGSLVIDRTEA 710 Query: 299 LTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 +T +D+N+ + T GG++EET NLEAA+EI RQLRLRD+GG+IVIDFIDM ++ Sbjct: 711 MTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRD 770 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V RL E + +DR + Q++ ++ GL++M+R+RL L E C C+G G V ++ Sbjct: 771 LVLRRLIECLGRDRTKHQVAEVTSLGLVQMTRKRLGTGLLEVFSEPCEHCAGRGLVVHDQ 830 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 LS + E KRS A E +D + + + Sbjct: 831 PLSGRSGGASDYIHRHERNDR----------------KRSRAAAREDSRDQQKQDALESK 874 Query: 478 QMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 + E + + S ++ + + + A Sbjct: 875 KAERRNAMAAVAAASAHSEEASEETASTRKKRKRRKRSRRAETAELSLEQEIQGIAEAAS 934 Query: 538 PPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPK 597 A VA + L+ F ++ + G E+ + + Sbjct: 935 EQAHAEVAQREDKVAEVTEGNWIGEQGGFSLEQLASAFDRVEEESAEGSSKDSAEERSDQ 994 Query: 598 AEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRES- 656 A+ R R + + + R R E D E S + + +R S Sbjct: 995 ERAEERRSSKRGEKKSSRNRKRRELTDADIAAVEDSGAGALEDEHHVDPELDPRFSRSSD 1054 Query: 657 RQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPV 716 R +A +A+ Q+A R R+ + + + AK N E++ + T E Sbjct: 1055 RFEAIRAGEAKARASQKAGRLARAEGESFRSGREDRSAKRQNAEQKGAEATSAEVNSGVQ 1114 Query: 717 QPRRKQRQLNQKVRYEQSVAEE---------AVVAPVVEETVAAEPIVQEAPAPRTELVK 767 + + +R + +R E A E++ ++APA ++ K Sbjct: 1115 KAQESKRVEREDLRIEDVRETPRASRRRARRAADEKRAEKSAEQSVASEQAPAKADKIEK 1174 Query: 768 VP-LPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPM 826 PVV ++P R+R + Sbjct: 1175 SESRPVVTGVISAPAVTGVVGAAPAAVEAPVEDQTPAAQVPGSTPRKRRTRRAASSAGAG 1234 Query: 827 PLTVACASPELASGKVWIRYPIVRPQDVQVE 857 V + E A G V + V + Sbjct: 1235 AQVVTVDASERAEGSVVASASVADVAPVADD 1265 >UniRef50_D1B5Z1 Ribonuclease, Rne/Rng family n=3 Tax=Synergistaceae RepID=D1B5Z1_THEAS Length = 496 Score = 531 bits (1368), Expect = e-149, Method: Composition-based stats. Identities = 158/489 (32%), Positives = 259/489 (52%), Gaps = 24/489 (4%) Query: 2 KRMLINATQQEELRVALVD-GQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 K ++ N + EE RVA++D RL D+ IE QK IYK ++ + P + AAFV+ Sbjct: 5 KTIVANTLESEESRVAVLDPSGRLLDIYIERMWERQKAGEIYKARVDNVLPGMNAAFVNL 64 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+GFL L+++ R G+E++VQ+ K R KGA +T + Sbjct: 65 GDGRNGFLYLEDLGRSP-----------------HPGEEILVQVAKTARKGKGARVTPKL 107 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLVL+P G+S+RIE ++ + + L P+G G+IVRT G + L Sbjct: 108 SLPGRYLVLVPEGKDV-GVSKRIEDEEERQRLKVLGREVRPQGFGIIVRTVAQGCHMDQL 166 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 + D+ + W++I AA PAP L++++ ++ R RD L + E+++DNP+ L+L Sbjct: 167 KSDVEDLMDLWDSICAAASRSPAPCLLYRDRGLLDRVLRDELDHQVAEVVVDNPEELDLV 226 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 R+ + ++ LY G P+F Y +E ++E A +R+V LPSG +VID EALT Sbjct: 227 REMVGRFFSQGKGPEVTLYRGRTPVFEVYGVEREMELALERKVWLPSGAYLVIDQAEALT 286 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ID+N+ + T D++ T TNLEAA+EIARQLRLR +GG++V+DFIDM H++ + Sbjct: 287 VIDVNTGKFTGSKDLKSTILKTNLEAAEEIARQLRLRAIGGIVVVDFIDMDDESHRQILL 346 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 RE ++ DR R ++ ++ GL+E++R+R L CP C G+G V ++ + Sbjct: 347 ETTRELLKGDRQRAKVFGVTSLGLVELTRRRTRGDLKSVMTRGCPMCGGSGLVEREDACA 406 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 + + R + + + + +A + + A E R ++ + ++ Sbjct: 407 MRLKRAVRKMTGDSPPEALLVAANPQLARHC----AEYLLAWEEEFR-CRILLREDQSLQ 461 Query: 481 TPHYHVLRV 489 + V Sbjct: 462 WGRFKVEHQ 470 >UniRef50_Q2IVP9 RNAse E n=3 Tax=Bradyrhizobiaceae RepID=Q2IVP9_RHOP2 Length = 1060 Score = 528 bits (1361), Expect = e-148, Method: Composition-based stats. Identities = 230/739 (31%), Positives = 342/739 (46%), Gaps = 18/739 (2%) Query: 71 KEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLM 130 ++ E + + I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLM Sbjct: 315 DDVLEEVPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLM 374 Query: 131 PNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLK 189 PN R GGISR+I DR+ LKE + L++PEGMG+I+RTAG ++ ++ D + ++ Sbjct: 375 PNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGASRTKPEIKRDFEYLIR 434 Query: 190 HWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGR 249 WE ++ AP L+++E ++I R+ RD ++I EI + + AR + L Sbjct: 435 MWETVRDVTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGEAGYQEARDFMHML-M 493 Query: 250 PDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARA 309 P +KLY PLFS +ESQ+++ F V+L SGG IVI+ TEAL +ID+NS R+ Sbjct: 494 PSNVRAVKLYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRS 553 Query: 310 TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQ 369 TR IE+TA TNLEA++E+ARQLRLRDL GLIVIDFIDM R+ RAVE +L + +RQ Sbjct: 554 TREHHIEDTALKTNLEASEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQ 613 Query: 370 DRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEE 429 DRARIQ+ IS FGLLEMSRQR+ S+ ESS CP C G+G VR S++L +LR +EE Sbjct: 614 DRARIQVGRISHFGLLEMSRQRIRASVLESSTEPCPHCGGSGHVRSVSSVALQLLRGLEE 673 Query: 430 EALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRV 489 +K T + +A Y+LN+KR + +ET G R + + Sbjct: 674 ILMKGATHNLIVRTRADVALYVLNQKRGHLRDLET---GFRVTLSVVSDPTVTGQQSFVI 730 Query: 490 RKGEETPTLSYMLPKLHEEAMALPSE-EEFAERKRPEQPALATFAMPDVPPAPTPAEPAA 548 +GE+ TL L + A P + EE E + V A A + Sbjct: 731 DRGEQVHTLESAKALLAAQVAAYPVQAEEPFEDDEGYEFEAEIETDETVGLADEHASDSG 790 Query: 549 PVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGG---EETKPTEQPAPKAEAKPERQ 605 +R GA + E + + + Sbjct: 791 EGEGEGDARKRKRRRRRRSRTGEAREAGAPREDGDAALVPEVLEAVSEDDSEDGDDSADG 850 Query: 606 QDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEK 665 + + ++ + R R R A + + +E E Sbjct: 851 AEGDGDARADQANGERRPRRRGRRGGRRRRGAAEGGLEEGASGSIVDDIGELETSEAAEA 910 Query: 666 ARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQL 725 A D + R + R++ + A+ + V +E EER PVQ ++ + Sbjct: 911 AADMDGGGSDGRLLGK-RHEPDIDDDEMAEPVTATLSPV-ASEPEERAEPVQAQQSEPVA 968 Query: 726 NQK-----VRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVK--VPLPVVAQTAP 778 + + A A + E + + P+ E P Q P Sbjct: 969 SAPAQDAAPSAQAQDDAAAERAAARRRSTVREKVNFGSSEPKVEASTPLAIEPAAQQPEP 1028 Query: 779 EQQEENNADNRDNGGMPRR 797 + P R Sbjct: 1029 APAIPEPQAAAEPAPEPSR 1047 Score = 92.1 bits (227), Expect = 1e-16, Method: Composition-based stats. Identities = 38/77 (49%), Positives = 53/77 (68%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+AT EE RV +V G R+ + D E+ +Q + NIY K+TR+EPSL+AAF++YG Sbjct: 3 NKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIEYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFSEIHPDYY 79 >UniRef50_Q0AWI9 RNAse G n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWI9_SYNWW Length = 476 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 157/487 (32%), Positives = 254/487 (52%), Gaps = 15/487 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + +I E RVA+V+ RL ++ G IYKGKI I P L F+D Sbjct: 1 MIKEIIAEVYPWESRVAIVEDGRLAEVFWADQGEN--VGKIYKGKIKDILPGLSCVFIDI 58 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ FL ++ R N+ ++L+ GQ+++VQ+ KE KGA +T + Sbjct: 59 GLARNAFLYAGDVVR------VGKKKGLNVYELLKSGQDIMVQVKKEAFSEKGARVTGDL 112 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 S+ G LVL+P ISR+I GD+R + +L PE G+IVRTA + + + Sbjct: 113 SIPGRLLVLLPFQNEV-SISRKITGDERRKHLRSLLEESKPENGGIIVRTACLEAEDQEI 171 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 +L+ LK WE IK+ ++R AP LI+++ +V+ R RDYL ++ I+I+N ++ + Sbjct: 172 IQELNRLLKTWEEIKQRYQNRKAPSLIYEDMDVLERTMRDYLDGNLSRIVINNRRLKDKI 231 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 +I+ + +++ E LF Y +E I+ + +R++ L +GG ++ D TEA+T Sbjct: 232 LDYISG---KKIFNSLRVDYEEGALFEKYNLEKDIKRSLRRKIWLKNGGYLIFDRTEAMT 288 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ID+NS + T + EET F N+EAA EI RQLRLR LGG+I+IDFIDM +Q + Sbjct: 289 VIDVNSGKFTGKDNFEETVFKINMEAAIEIPRQLRLRSLGGIILIDFIDMKEKSNQDELI 348 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 L+ + +D+A +I I+ G LEM+R++ + E C CSG G + + ++L+ Sbjct: 349 KVLKTGLEKDKANTRIIGITGLGFLEMTRKKSRYGVVEFFTDECSNCSGRGHIINLQALA 408 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 R + EN Q + P +L + + IE R G +++ + + Sbjct: 409 SEAKRKMAHMGYLENNQIICKAEPR--LLKILKDDEKDIGYIERR-SGKSVLLLSDPDLA 465 Query: 481 TPHYHVL 487 Y + Sbjct: 466 PGEYKIF 472 >UniRef50_B2KEH9 Ribonuclease, Rne/Rng family n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KEH9_ELUMP Length = 483 Score = 528 bits (1360), Expect = e-148, Method: Composition-based stats. Identities = 158/482 (32%), Positives = 266/482 (55%), Gaps = 19/482 (3%) Query: 8 ATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGF 67 T EE RVA+V+ RL +L E G NIYK + + P + +AFV+ G E++ + Sbjct: 15 NTSFEETRVAIVENGRLAELMWERRGAVNIVGNIYKATVENVLPGISSAFVNIGYEKNAY 74 Query: 68 LPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYL 127 L + ++ + NI+ V+++GQE++VQ+ K+ G KG +T ++L G +L Sbjct: 75 LYISDVL---------GDEKKNIEKVIKKGQEIMVQVVKDAIGTKGMKITMDVTLPGRFL 125 Query: 128 VLMPNNPRAGGISRRIEGD-DRTELKEALASLELP--EGMGLIVRTAGVGKSAEALQWDL 184 VL P+ G+S+ IE + +R +L + + L GMG IVRT + + L+ ++ Sbjct: 126 VLTPHQSFV-GVSKNIEDNQERHKLNDMVQELAEKYLHGMGCIVRTEAEEATKDELEREV 184 Query: 185 SFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHI 244 + + W++I E+ P+P ++H++ + +++ RD L ++I +DN K E + Sbjct: 185 KYLYRQWQSILNKFETLPSPSILHEDMDAVLQVSRDILSENIEVYYLDNKKDYENVLDFV 244 Query: 245 AALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDI 304 + P+ KIKLY G+ P+F + IES+I++ + ++ LP+GGSI+I E+L AID+ Sbjct: 245 SK-NSPELKDKIKLYKGKTPIFEAFNIESEIDNLRKTKISLPNGGSIIIQEAESLCAIDV 303 Query: 305 NSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLR 364 N+ + T EET TN+EAA E+A QLRLR++GG++VIDFIDM ++ V L Sbjct: 304 NTGKFTGSKSQEETVTQTNIEAAQEVAHQLRLRNIGGIVVIDFIDMKKASNRHRVVEALA 363 Query: 365 EAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSIL 424 +AV +DRA+I+I I+R GL+EM+R+R S G CP+C G+G V ES+ + I Sbjct: 364 DAVHRDRAKIRILPITRLGLVEMTRERKKESTGSLLTEECPQCHGSGRVLSAESMRIKIQ 423 Query: 425 RLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHY 484 R I + + ++ +A + +++ + IE I + Q+ Y Sbjct: 424 REIYDLTQGRPGGNLRIVLHPELADQIKHQQ----SVIEQNIHR-SMKIQSDAQLSWEDY 478 Query: 485 HV 486 + Sbjct: 479 KI 480 >UniRef50_B6INB6 Ribonuclease, Rne n=1 Tax=Rhodospirillum centenum SW RepID=B6INB6_RHOCS Length = 1035 Score = 528 bits (1359), Expect = e-148, Method: Composition-based stats. Identities = 208/506 (41%), Positives = 300/506 (59%), Gaps = 7/506 (1%) Query: 86 GRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145 I++V++ Q ++VQ+ KEERGNKGAALTT++SL G Y VLMPN PR GGISR+I Sbjct: 226 KSYKIQEVIKRRQILLVQVTKEERGNKGAALTTYLSLPGRYCVLMPNTPRGGGISRKITN 285 Query: 146 -DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAP 204 DR +KE L L++P+GM +I+RTAG+ +S ++ DL + ++ W++I++ AP Sbjct: 286 PADRKRMKELLEGLDVPQGMSVILRTAGIERSKPEIKRDLEYLMRLWDSIRELTLQSVAP 345 Query: 205 FLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIP 264 LI++E+N+I R+ RD DI E++++ + A+ + L P + K++ Y +IP Sbjct: 346 ALIYEEANLIKRSIRDLYASDIDEVIVEGEQGYRTAKDFMRML-MPSHAKKVQPYKDDIP 404 Query: 265 LFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNL 324 LF +Q+E IE+ F V+L SGG IVI+ TEAL AID+NS R+T+ +IEETA TNL Sbjct: 405 LFHRFQVEGAIETMFDPVVQLRSGGYIVINQTEALVAIDVNSGRSTKERNIEETALRTNL 464 Query: 325 EAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGL 384 EAA+EIARQLRLRDL GLIVIDFIDM R+ +VE RL+EA++ DRARIQ+ IS FGL Sbjct: 465 EAAEEIARQLRLRDLAGLIVIDFIDMEEARNNASVEKRLKEAMKADRARIQLGRISPFGL 524 Query: 385 LEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVP 444 LE+SRQRL PSL E + CP C+GTG VR ES +L++LR IEEE ++ + E+ Sbjct: 525 LELSRQRLRPSLQEINFERCPHCAGTGLVRSVESAALAVLRAIEEEGIRRRSAEITVTAA 584 Query: 445 VPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPK 504 + Y+LN+KR ++ AIE R G+R + +D + P + + R+R + L Sbjct: 585 ASLVLYILNQKRESLTAIERRY-GLRVYLAADDSLTPPAHRLERLRARQPGDDLPVAQTT 643 Query: 505 LHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAA 564 + E + ++ + E L AP AE + + + Sbjct: 644 VSAEKVYAETDRALEVEEAEEAEELEEETEESAATAPQTAEERSQGDRDSRRRRRRRRRR 703 Query: 565 PAQPGLLSRFFGALKALFSGGEETKP 590 P + +RF A ET Sbjct: 704 PGE----ARFGDAEATTLPADAETAE 725 Score = 107 bits (268), Expect = 2e-21, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 53/77 (68%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 KRML++AT EE RV +V G RL +LD E +Q K NIY K+ R+EPSL+AAFV+YG Sbjct: 3 KRMLVDATHPEETRVVVVSGNRLEELDFEIASRKQLKGNIYLAKVIRVEPSLQAAFVEYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFSEIHPDYY 79 >UniRef50_D2SCS1 Ribonuclease, Rne/Rng family n=39 Tax=Bacteria RepID=D2SCS1_9ACTO Length = 1048 Score = 527 bits (1357), Expect = e-147, Method: Composition-based stats. Identities = 143/419 (34%), Positives = 240/419 (57%), Gaps = 8/419 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R ++ + E ++A+++ L + + N+Y G++ + PS+EAAF+D Sbjct: 384 VDRKMVIRQRGERTQIAVLEDDVLVEHYVTQAQATSFAGNVYLGRVQNVLPSMEAAFIDI 443 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + + + +I+ L+ G +V+VQ+ K+ G+KGA LT + Sbjct: 444 GKGRNAVLYAGEVNWDAAGL---SGKQRSIEQALKSGDKVLVQVTKDPIGHKGARLTQQV 500 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +L G +LV +P GISR++ +R LK+ L + +PE G+I+RTA G S E L Sbjct: 501 NLPGRFLVYVPGGSMT-GISRKLPDTERQRLKDVLKKI-VPEDAGVIIRTAAEGASEEEL 558 Query: 181 QWDLSFRLKHWEAIKKAAESR-PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 D++ W+ I++ AES AP L++ E ++ +R RD +D E+++ + Sbjct: 559 TRDVNRLQAQWDVIQRKAESSSNAPSLLYGEPDLAIRVIRDVFNEDFKELVVQGDDAWDT 618 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 ++A + P+ ++ +TGE +F +I+ Q+ A R+V LPSGGS+VID TEA+ Sbjct: 619 VEAYVAHVS-PELVGRLTRHTGEGDVFRDLRIDEQLAKALDRKVWLPSGGSLVIDRTEAM 677 Query: 300 TAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 T +D+N+ + T GG++E+T N+EAA+EI RQLRLRD+GG+IVIDFIDM ++ Sbjct: 678 TVVDVNTGKFTGSGGNLEQTVTRNNMEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDL 737 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V RL E + +DR + Q++ ++ GL++M+R+R+ L E C C G G V + Sbjct: 738 VLRRLTECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLEVFSEPCEHCRGRGVVVHID 796 >UniRef50_D1N7U6 Ribonuclease, Rne/Rng family n=2 Tax=Lentisphaerae RepID=D1N7U6_9BACT Length = 544 Score = 527 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 188/541 (34%), Positives = 282/541 (52%), Gaps = 49/541 (9%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 + +I ++ E R AL++ RL + IE G+E K +IY GKI +EPSL+AAFVD GA Sbjct: 6 KQIILNCEKLERRFALLNNGRLEEYQIERDGNEPKVGDIYLGKIINLEPSLQAAFVDIGA 65 Query: 63 ERHGFLPLKEIAR--------------------------------------------EYF 78 E++ FL E+ + Sbjct: 66 EKNAFLHYHEMLPGCDELLGRRDSDDDDDEKTVSGNEQPIQAKRQKRQEAKPNSKVNQEA 125 Query: 79 PANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGG 138 +I ++ + G E++VQ+ K KGA +TT IS+AG YLVLMP + G Sbjct: 126 LRRKKKLTVADIPNIFKPGMEILVQVVKSPISTKGARVTTDISIAGRYLVLMPYSEHI-G 184 Query: 139 ISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKA 197 +S RIEG +R L++ LA+LELPEGMGLI RT G G+ + + DL L +W I+K Sbjct: 185 LSTRIEGGQERDRLRKILAALELPEGMGLICRTVGEGRRSTFFKRDLDLLLDNWRKIEKG 244 Query: 198 AESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIK 257 ++R AP L++ E N++ R RD++ ++ I++D+ + + G + K+ Sbjct: 245 MDTRNAPALLYTEPNLVERTIRDFMTEEFQGIVVDDADASCQIIETLNRFGGRKMAEKVT 304 Query: 258 LYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEE 317 LY P+F Y+I Q+ FQREVRLP GG+IV+D TEAL AID+NS R +G D E Sbjct: 305 LYNSGKPVFEAYRINDQLREVFQREVRLPGGGAIVVDETEALIAIDVNSGRGRKGADQPE 364 Query: 318 TAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQIS 377 TNLEAA+EIARQLRLR++GGL+V+DFIDM R + V ++ V+ DRA+ ++ Sbjct: 365 FILKTNLEAAEEIARQLRLRNIGGLVVLDFIDMRSARDREEVYRTMKRLVKDDRAKTKVL 424 Query: 378 HISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQ 437 +SR GL+EM+RQR S+ + CP C G+G V+ S+S+ I R + + + Sbjct: 425 PLSRLGLMEMTRQREHESIKDQVFMPCPYCHGSGRVKSVVSMSVEIQRRLNTVLRESRYR 484 Query: 438 E--VHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEET 495 V I+ I L NE + +E + + + + + ++ G+E Sbjct: 485 NRPVRVIMHPDILQRLRNEDALLLRELEEKY-KHDLSFRADPMLHSEEFKLVDPDTGDEL 543 Query: 496 P 496 Sbjct: 544 K 544 >UniRef50_Q3J4J9 RNAse E n=6 Tax=Rhodobacteraceae RepID=Q3J4J9_RHOS4 Length = 936 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 190/446 (42%), Positives = 276/446 (61%), Gaps = 3/446 (0%) Query: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 ++A E R I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMP Sbjct: 193 DVAEEIPAPRKPRSRRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMP 252 Query: 132 NNPRAGGISRRIE-GDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 N R GGISR+I DR +LKE + LE+PEG GLI+RTAG ++ + ++ D + L+ Sbjct: 253 NTARGGGISRKITQAADRKKLKEIASELEVPEGAGLIIRTAGAKRTKQEIRRDYEYLLRL 312 Query: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 WE I+ AP I++E ++I R RD ++I E+L++ A+ + + P Sbjct: 313 WEQIRDLTLKSVAPAPIYEEGDLIKRTIRDLFNREIEEVLVEGETGYRTAKDFMRMI-MP 371 Query: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 + ++ Y +PLF+ YQ+ES + F V+L SGG IVI TEAL AID+NS RAT Sbjct: 372 AHARQVIRYDEPMPLFARYQVESYLSGMFNPVVQLKSGGYIVIGVTEALVAIDVNSGRAT 431 Query: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 + G IEETA TNLEAA+E+ARQLRLRDL GLIVIDFIDM ++ AVE RL++ ++ D Sbjct: 432 KEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAVEKRLKDKLKTD 491 Query: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 RARIQ+ IS FGL+EMSRQRL P + ES+ C C GTG +R ++SL+L +LR +EEE Sbjct: 492 RARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLIRSDDSLALQVLRQLEEE 551 Query: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 ++ ++EV P+ + ++L+N KR + IE R G+ + + + +P Y + + + Sbjct: 552 GTRKRSKEVLLRAPIAVVNFLMNSKREHIAMIEARY-GMAVRVEADPSLSSPDYVIEKFK 610 Query: 491 KGEETPTLSYMLPKLHEEAMALPSEE 516 + + + M P +E Sbjct: 611 TATRVVPEAVKVISGSADLMGAPVDE 636 Score = 113 bits (282), Expect = 4e-23, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 53/77 (68%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLI+AT EE RV +VDG ++ + D E+ Q NIY K+TR+EPSL+AAFVDYG Sbjct: 3 KKMLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVDYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFAEIHPDYY 79 >UniRef50_B5JNK0 Ribonuclease, Rne/Rng family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNK0_9BACT Length = 582 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 186/514 (36%), Positives = 284/514 (55%), Gaps = 27/514 (5%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQ-KKANIYKGKITRIEPSLEAAFVDYG 61 R LI ++ E+RV + L DIE Q I+KG+I ++P L+AAFVD G Sbjct: 68 RELIINSEPLEIRVGQLVDGILDKFDIERRHSAQRIVGGIFKGRIKNLDPGLKAAFVDIG 127 Query: 62 AERHGFLPLKEIAR-------EYFPANYSAHGRPNIKDVLRE-------GQEVIVQIDKE 107 ++ FL +I E N S G+ K L+E G E+++QI K Sbjct: 128 MPKNAFLHYWDIQPQEADSSIEVVRVNSSRKGKKQAKIPLKEIPNHYPIGTEIVIQITKG 187 Query: 108 ERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGL 166 G KG TT +S+ G ++VL+P++ + GISR+IE + +R LK+ + L +PEGMG+ Sbjct: 188 PIGTKGPRSTTNLSIPGRFIVLVPHSDQ-CGISRKIEDNKERQRLKKIIRDLTIPEGMGI 246 Query: 167 IVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDI 226 IVRTAG GK A DL L+ WE I+K +S AP +++E ++ R RD+L +DI Sbjct: 247 IVRTAGEGKKARYFVRDLHILLQTWEKIQKKMDSARAPACLYKEPDLAERTVRDFLTEDI 306 Query: 227 GEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLP 286 +LIDN + + +A + + +SKI+LY IP+F Y IE QIE FQR+V LP Sbjct: 307 DRVLIDNEEDHGRISETVAQISKRS-TSKIQLYQDSIPIFERYNIEKQIEQTFQRQVPLP 365 Query: 287 SGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVID 346 SGG+IVI+ TEAL AID+N+ G+ +T F N EAA+E+ARQ+RLR++GGLI+ID Sbjct: 366 SGGAIVIEETEALIAIDVNTGSHKNRGNENDTIFQVNCEAAEEVARQIRLRNIGGLIIID 425 Query: 347 FIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPR 406 FIDM RH+ A+ +R+R+A+ D+A+ I IS G+++M+RQR+ S+ + CP Sbjct: 426 FIDMKQRRHRNAILSRMRDAMSSDKAKTHILPISPLGIMQMTRQRMQESVSSGLYTDCPY 485 Query: 407 CSGTGTVRDNESLSLSILRLIEEEALKENTQ--------EVHAIVPVPIASYLLNEKRSA 458 C G G V+ ++S+ + R + + + ++ +V I L E Sbjct: 486 CRGKGIVKSGTTVSVELQRKLSGIIRRARNRTPDLAKPIKLRILVNPAIIDRLREEDADL 545 Query: 459 VNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKG 492 + ++E + + + +Y V+ V G Sbjct: 546 LISLEKDYNA-QLTFRADPNFHVENYRVIDVETG 578 >UniRef50_B6JHD4 Ribonuclease E (RNase E) n=19 Tax=Alphaproteobacteria RepID=B6JHD4_OLICO Length = 1123 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 212/650 (32%), Positives = 317/650 (48%), Gaps = 8/650 (1%) Query: 71 KEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLM 130 + E + + I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLM Sbjct: 404 DDALEEVPERTFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLM 463 Query: 131 PNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLK 189 PN R GGISR+I DR LK+ + L++PEGMG+I+RTAG ++ ++ D + ++ Sbjct: 464 PNTARGGGISRKITSAQDRNRLKDVVQDLDVPEGMGIILRTAGASRTKPEIKRDFEYLIR 523 Query: 190 HWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGR 249 WE ++ AP L+++E ++I R+ RD ++I E+L+ + AR + L Sbjct: 524 MWETVRDLTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEVLVSGEEGYHEARDFMKML-M 582 Query: 250 PDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARA 309 P +KLY PLFS +ESQ+++ F V L SGG +VI+ TEAL +ID+NS R+ Sbjct: 583 PSNVRAVKLYRDNQPLFSRMGVESQLDAMFSPVVTLRSGGYLVINQTEALVSIDVNSGRS 642 Query: 310 TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQ 369 TR IE+TA TNLEAA+E+ARQLRLRDL GLIVIDFIDM R+ RAVE +L + +RQ Sbjct: 643 TREHHIEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQ 702 Query: 370 DRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEE 429 DRARIQ+ IS FGLLEMSRQR+ S+ ESS CP C G G VR S++L +LR +EE Sbjct: 703 DRARIQVGRISHFGLLEMSRQRIRASVLESSTEPCPTCGGIGHVRSVASVALQLLRSLEE 762 Query: 430 EALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRV 489 + +K T +A Y+LN KR + +E V ++ + + + Sbjct: 763 QLMKSGTHNYTVRTRTDVALYVLNHKRGHLRDLEEAFQ-VTLAVIADPTVGGQQ--AFVI 819 Query: 490 RKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAP 549 +GE+ T+ L A P E E + + + T Sbjct: 820 ERGEQVHTVEAAKALLAARVAAQPVEVEEFDAEEEFFEEETETESAENGDTETADAQGEN 879 Query: 550 VVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRR 609 + + S +A + + +E +EA R ++ Sbjct: 880 EDGNRRRRRRRRGRGRGEGREASAQSAEGEASTGEDTQAEASEDGEEDSEAASARGEENG 939 Query: 610 KPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTA 669 + R R R RR + G + +A + +A+ + + A Sbjct: 940 ERRPRRRGRRGGRRRRGNGNGNGDEATATAGEADTEAGEASADEGTPHNLSMPSFDAPQP 999 Query: 670 DEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPR 719 D E + A A + E ++ R V+ + Sbjct: 1000 DISVPIATEN---ESTPAPAATAPTAAAPEADAPAHEEDKAPRRSTVREK 1046 Score = 92.5 bits (228), Expect = 8e-17, Method: Composition-based stats. Identities = 39/77 (50%), Positives = 53/77 (68%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+AT EE RV +V G R+ + D ES +Q + NIY K+TR+EPSL+AAF++YG Sbjct: 109 NKMLIDATHPEETRVVVVRGNRVEEFDFESAQRKQLRGNIYLAKVTRVEPSLQAAFIEYG 168 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 169 GNRHGFLAFSEIHPDYY 185 >UniRef50_Q92QJ4 Probable ribonuclease E n=1 Tax=Sinorhizobium meliloti RepID=Q92QJ4_RHIME Length = 924 Score = 524 bits (1350), Expect = e-147, Method: Composition-based stats. Identities = 222/691 (32%), Positives = 331/691 (47%), Gaps = 14/691 (2%) Query: 83 SAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRR 142 + I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+ Sbjct: 236 KPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRK 295 Query: 143 IEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESR 201 I DR LKE L++P+GMG+I+RTAG ++ ++ D + ++ WE ++ + Sbjct: 296 ITNLQDRKRLKEIARGLDVPQGMGVILRTAGANRTKVEIKRDFEYLMRLWENVRTLTLNS 355 Query: 202 PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTG 261 AP L+++E ++I R+ RD +DI EI++ + + A+ + L P + ++ Y Sbjct: 356 TAPCLVYEEGSLIKRSIRDLYNKDISEIVVSGEEGYKEAKGFMKML-MPSHAKVVQPYRD 414 Query: 262 EIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFN 321 P+FS IE+Q++ Q +V L SGG I+I+ TEAL +ID+NS R+TR IE+TA Sbjct: 415 VHPIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHSIEDTALQ 474 Query: 322 TNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISR 381 TNLEAA+E+ARQLRLRDL GLIVIDFIDM R+ R+VE +L++ ++ DRARIQ+ IS Sbjct: 475 TNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISH 534 Query: 382 FGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHA 441 FGLLEMSRQR+ S+ ES+ CP C+GTG +R S++L +LR IEE LK T ++ Sbjct: 535 FGLLEMSRQRIRASVLESTMQTCPHCNGTGHIRSQSSVALHVLRGIEEHLLKNTTHDISV 594 Query: 442 IVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYM 501 IA YLLN+KRS++ E R GV I + + H+ + R E + + Sbjct: 595 RTTPDIALYLLNQKRSSITDYEQRF-GVSIFIEADAHVGAQHFAIDRGEPVENPVRIDQI 653 Query: 502 LPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPAT 561 L E E + + A P K Sbjct: 654 LQFEPEPEDEEEVLIEEESDEEEVEEIAAERQDP-------KKGQTDEQGGRKRKRRRRR 706 Query: 562 PAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNE 621 A G F A A + + + +A D Q +R R Sbjct: 707 RGKGAGQGADEAFADAADAAEDETGDEAAVDDAEDEVDATDALNGDSE---QKRKRRRRG 763 Query: 622 RRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSR 681 +R R R + E +A + + E+ + + D A E + Sbjct: 764 KRGGRRSRQDELAEAEGETGMAAEAGEGAGDDAEAEVAPAAAAEETSPDIAAAAAVEAAA 823 Query: 682 RRNDDKRQAQQEAKALNVEEQ-SVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAV 740 + + KA+ EE + E+ V + + + Sbjct: 824 EEPKPAKPRRSRKKAVKAEEPAESVDEVAEKTVEAQPEATEAAPEAVEEAVADLEGAKPA 883 Query: 741 VAPVVEETVAAEPIVQEAPAPRTELVKVPLP 771 A +A EP+V + E P Sbjct: 884 RANRDLSAIATEPVVTSSKGEGEEEPTKPKK 914 Score = 108 bits (269), Expect = 2e-21, Method: Composition-based stats. Identities = 40/76 (52%), Positives = 53/76 (69%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 +MLI+A+ EE RV +V G R+ + D ES +Q + NIY K+TR+EPSL+AAFVDYG Sbjct: 4 KMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYGG 63 Query: 63 ERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 64 NRHGFLAFAEIHPDYY 79 >UniRef50_D2LHL1 Ribonuclease, Rne/Rng family n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LHL1_RHOVA Length = 1049 Score = 524 bits (1349), Expect = e-147, Method: Composition-based stats. Identities = 238/715 (33%), Positives = 340/715 (47%), Gaps = 18/715 (2%) Query: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 + E + I++V++ Q V++Q+ KEERG+KGAALTT++SLAG Y VLMP Sbjct: 311 DALEELPQRHKRRWRHYKIQEVIKRNQIVLIQVVKEERGSKGAALTTYLSLAGRYTVLMP 370 Query: 132 NNPRAGGISRRIE-GDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 N GGISR+I DR LKE L++PEGMGLI+RTAG ++ ++ D + L+ Sbjct: 371 NTASGGGISRKITVPADRKRLKEIAQELDVPEGMGLIIRTAGASRTKAEIKRDFEYLLRL 430 Query: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 WE ++ AP L+++E ++I R+ RD +DI EIL+ + AR+ + L P Sbjct: 431 WENVRDLTLKSTAPCLVYEEGDLIKRSIRDLYNKDIDEILVAGDEAHHEAREFMRML-MP 489 Query: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 + + LY P+F+ Y++E Q+ F V L SGG IV++ TEAL AID+NS R+T Sbjct: 490 SHAKNVLLYKEPEPIFTKYEVERQLNQMFSPVVTLKSGGYIVLNQTEALVAIDVNSGRST 549 Query: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 R IE+TA TN+EAA+E+ARQ+RLRDL GLIVIDFIDM R+ R+VE +L+E++R D Sbjct: 550 REYSIEDTALKTNMEAAEEVARQVRLRDLAGLIVIDFIDMDERRNNRSVERKLKESLRHD 609 Query: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 RARIQ+ HIS FGL+EMSRQRL + E S CP C G G +R ES++L ILR IE+ Sbjct: 610 RARIQVGHISHFGLMEMSRQRLRQGVVEVSTVPCPVCQGVGHIRSIESVALMILRSIEDH 669 Query: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 + + A Y+LN KRS + IE R GV V+ P+D+ H+ + R Sbjct: 670 LRTQGAANITLTASTEAALYILNNKRSYLRDIELRY-GVTIVLQPDDKAHGAHFVLER-- 726 Query: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 E P + +H E +L +E E + PA A A + + + Sbjct: 727 GAEAVPPVVGDSRVVHMETASLAQADEEEEAEPASSPAAAATAEGEGEKRTSRRKRRRRR 786 Query: 551 VAPAPKAAPATPAAPAQP-GLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRR 609 A P S G +E A E +++ Sbjct: 787 GRGDAAADAPLPNGHTVSMAEGSDDDDDDDDDTDGADEGVTEAGAQAVAAVNGEDRRESA 846 Query: 610 KPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQ--AEVTEKAR 667 + RQ+ + R RR R D+ +Q E +A Sbjct: 847 EERQDGQFRR-NRRRGRRGGRRHRDDFAGQPGEIPGLGEQPEIDFEHGLPVVQSPAAEAV 905 Query: 668 TADEQQ--APRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQL 725 TA+ AP+ E+S + EA+ V+ T PVQ Sbjct: 906 TAEAHADTAPQLEQSVEVAPVEASVAVEAEPKPVQAVGEDATADVASSDPVQSEAVAELA 965 Query: 726 NQKVRYEQSVAEEAVV-------APVVEETVAAEPIVQEAPAPRTELVKVPLPVV 773 + + AE AP AE + + P E VKV + Sbjct: 966 AEVASEPAAEAEAKPEALAAEADAPQSPNADVAEAVEAKPDEPAEEQVKVEAEIA 1020 Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats. Identities = 39/77 (50%), Positives = 51/77 (66%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+AT EE RV + G R+ + D ES +Q + NIY K+ RIEPSL+AAFV+YG Sbjct: 3 NKMLIDATHPEETRVVVTRGNRVEEFDYESASRKQLRGNIYLAKVARIEPSLQAAFVNYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFAEIHPDYY 79 >UniRef50_B9JDP7 Ribonuclease E protein n=3 Tax=Alphaproteobacteria RepID=B9JDP7_AGRRK Length = 960 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 225/717 (31%), Positives = 342/717 (47%), Gaps = 27/717 (3%) Query: 83 SAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRR 142 + I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+ Sbjct: 248 KPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRK 307 Query: 143 IEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESR 201 I DR LKE LE+P GMG+I+RTAG ++ ++ D + ++ WE ++ + Sbjct: 308 ITNPQDRKRLKEIAKMLEVPLGMGVILRTAGANRTKVEVKRDFEYLMRLWENVRTLTLAS 367 Query: 202 PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTG 261 AP L+++E ++I R+ RD +DI E+++ + A+ + L P + ++ Y Sbjct: 368 TAPCLVYEEGSLIKRSIRDLYNKDISEVIVSGEEGYREAKDFMKML-MPSHAKVVQPYRD 426 Query: 262 EIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFN 321 P+FS IE+Q++ Q +V L SGG ++++ TEAL +ID+NS R+TR IE+TA Sbjct: 427 IHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIMNQTEALVSIDVNSGRSTREHSIEDTALQ 486 Query: 322 TNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISR 381 TNLEAADE+ARQLRLRDL GLIVIDFIDM R+ RAVE +L+E ++ DRARIQ+ IS Sbjct: 487 TNLEAADEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKNDRARIQVGRISH 546 Query: 382 FGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHA 441 FGLLEMSRQR+ S+ ES+ VC C G+G VR S++L +LR IEE LK T ++ Sbjct: 547 FGLLEMSRQRIRASVLESTTQVCSHCGGSGHVRSQSSVALHVLRGIEEYLLKNTTHDITV 606 Query: 442 IVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYM 501 IA YLLN KR + E+R GV +I ++ + H+ + R E + + Sbjct: 607 RTTPEIALYLLNHKRQTIVDYESRF-GVAIIIGADNAVGAQHFAIDRGEPVENPVKIETL 665 Query: 502 LPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPAT 561 A+ E+ ++ P A + + Sbjct: 666 FNFAAIPEDDDDDIVIEADEDEDEELEEKAASVEQAPVARSSETNDGNRKRKRRRRRRGG 725 Query: 562 PAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNE 621 Q + E E + ++ + + Sbjct: 726 RGNEVQTA----------SQPGDTSAEDGDEDGDEGDEDDNNENSEVSAVSGSDEDAQQK 775 Query: 622 RRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSR 681 R+ R + G NR+ A + + + E + E + E Sbjct: 776 RKRRRRGKRGGRRNRDGEGEGNELAAGEESGSDEGADGEDDGENDVAVTVAEIVIAE--- 832 Query: 682 RRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVV 741 +A E++ ++ ++ + + RRK + V E V E A V Sbjct: 833 ------GEAAVESQPAMAAVETASTVTEDVKPAKSRSRRKPKAEASPV--EAPVVEAAPV 884 Query: 742 APVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRS 798 A ETV + + PA E V P A+ A +E N + + + R+ Sbjct: 885 ADAEAETVTEIAVALDTPA---EPVVAAEPEAAKPARANRESNVSSSSEPVVKSTRT 938 Score = 107 bits (267), Expect = 3e-21, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 54/77 (70%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+A+ +EE RV +V G R+ + D ES +Q + NIY K+TR+EPSL+AAFVDYG Sbjct: 3 DKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVDYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFAEIHPDYY 79 >UniRef50_D2PUT1 Ribonuclease, Rne/Rng family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PUT1_9ACTO Length = 1119 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 150/418 (35%), Positives = 249/418 (59%), Gaps = 7/418 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 ++R ++ + + ++A+ + L + + N+Y G++ + PS+EAAF+D Sbjct: 528 VERAMVIRARGDLTQIAVSEDNVLVEHYVAQEEQVSLIGNVYLGRVQNVLPSMEAAFIDI 587 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ +G I+ VL+ GQ V+VQ+ K+ G+KGA LT I Sbjct: 588 GKGRNAVLYAGEVDWNTLGG---GNGPRKIESVLKSGQAVLVQVTKDPIGHKGARLTNQI 644 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G Y+V +P GGISR++ +R+ LK L + +P+ G+IVRTA G + E L Sbjct: 645 SLPGRYVVYVPRGGN-GGISRKLPDTERSRLKGILKDI-VPDEAGVIVRTAAEGATEEEL 702 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 D+S +WE I K ++S AP L+H E ++++R RD +D +++I + Sbjct: 703 TADVSRLQAYWEDIDKKSKSGQAPQLLHGEPDLLIRVVRDLFTEDFAKLVISGDDAFDQV 762 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++++A+ P + ++ +TG+ +F++++I+ QI+ A R+V LPSGGS++ID TEA+T Sbjct: 763 SEYVSAVA-PHLAERVAKWTGDGDVFANFRIDEQIKKALDRKVWLPSGGSLIIDRTEAMT 821 Query: 301 AIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +D+N+ + T GG++EET NLEAA+EI RQLRLRD+GG+IVIDFIDM ++ V Sbjct: 822 VVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLV 881 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 RL E + +DR + Q++ ++ GL++M+R+R+ L E+ C C G G + +E Sbjct: 882 LRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRIGTGLLEAFGENCDHCGGRGLILHDE 939 >UniRef50_B9JVK9 Ribonuclease E n=40 Tax=Rhizobiales RepID=B9JVK9_AGRVS Length = 1035 Score = 523 bits (1347), Expect = e-146, Method: Composition-based stats. Identities = 230/721 (31%), Positives = 349/721 (48%), Gaps = 9/721 (1%) Query: 83 SAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRR 142 + + I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+ Sbjct: 288 TPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRK 347 Query: 143 IEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESR 201 I DR LKE LE+P GMG+I+RTAG ++ ++ D + ++ WE ++ + Sbjct: 348 ITNPADRKRLKEVARDLEVPLGMGVILRTAGANRTKVEVKRDFEYLMRLWENVRTLTLNS 407 Query: 202 PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTG 261 AP L+++E ++I R+ RD +DI EI++ + A+ + L P + ++ Y Sbjct: 408 TAPCLVYEEGSLIKRSIRDLYNKDISEIVVSGEEGYREAKDFMKML-MPSHAKVVQPYRD 466 Query: 262 EIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFN 321 P+FS IE+Q++ Q +V L SGG I+I+ TEAL +ID+NS R+TR IE+TA Sbjct: 467 IHPIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREYSIEDTALQ 526 Query: 322 TNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISR 381 TNLEAA+E+ARQLRLRDL GLIVIDFIDM R+ R+VE +L++ ++ DRARIQ+ IS Sbjct: 527 TNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISH 586 Query: 382 FGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHA 441 FGLLEMSRQR+ S+ ES+ VC CSGTG +R S++L +LR +EE LK T ++ Sbjct: 587 FGLLEMSRQRIRASVLESTTQVCQHCSGTGLIRSQSSVALHVLRGVEEYLLKSTTHDITV 646 Query: 442 IVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYM 501 A YLLN KR ++ E R GV +I + + H+ + + + + Sbjct: 647 RTLPETALYLLNHKRGSIVDYENRF-GVSIIIDSDASVGHQHFAIDKGEPVANPVRIETL 705 Query: 502 LPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPAT 561 LP + E P E E A A A + Sbjct: 706 LPLISEPEEDDPIIEIEEEDDEDVVEAPVQAQPASSGNAAANAAEDGNRKRKRRRRRRGK 765 Query: 562 PAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNE 621 G G ++++ + AE + + + N + Sbjct: 766 NGNGHADG-----QQNAAGGDEGDDDSEGEDDAEDTAEDRDDSVEASDASEDGNSESQRR 820 Query: 622 RRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSR 681 + R + G R+EN + TAE +S +++ + + + P + Sbjct: 821 NKRRRRGKRGGRRGRDENGVSADAEGNDTAEDDDSAEESVQADADQAVAVAEVPSDAVAD 880 Query: 682 RRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVV 741 + +A+ +E + + + + + V Sbjct: 881 SVVVAAEVSVPATEAVKADEPVAAKPRRARKPKASAKTEAADSVETVTEPAAVPEAVVVE 940 Query: 742 APVVEETVAAEPIVQEAPAPR-TELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRR 800 AP E VAA P+ +E P + V P P V APE E A + + P R+ R Sbjct: 941 APAAAEPVAASPVSEETSVPAPAQDVSAPEPAVEAPAPEVASEPEAVSDASAEKPVRANR 1000 Query: 801 S 801 S Sbjct: 1001 S 1001 Score = 105 bits (263), Expect = 7e-21, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 54/77 (70%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+A+ +EE RV +V G R+ + D ES +Q + NIY K+TR+EPSL+AAFVDYG Sbjct: 3 DKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVDYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFAEIHPDYY 79 >UniRef50_C4RPB5 Ribonuclease Rne/Rng n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RPB5_9ACTO Length = 1086 Score = 521 bits (1342), Expect = e-146, Method: Composition-based stats. Identities = 150/418 (35%), Positives = 243/418 (58%), Gaps = 7/418 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R++ + + ++A+++ L + + N+Y GK+ + PS+EAAFVD Sbjct: 535 VDRVMAVRQRGDRTQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQNVLPSMEAAFVDI 594 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + A +I+ LR G V+VQ+ K+ G+KGA LT+ I Sbjct: 595 GRGRNAVLYAGEVNWDTTGLEGRAR---SIEQALRSGDSVLVQVTKDPIGHKGARLTSHI 651 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +L+G +LV +PN A GISR++ +R L++ L L +P+G G+IVRTA G S + L Sbjct: 652 ALSGRHLVYVPNGN-ASGISRKLPDTERKRLRDVLKKL-VPDGAGVIVRTAAEGASEDEL 709 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 D+ WE I+ S AP L+++E ++++R RD +D E++I+ + + Sbjct: 710 ARDVKRLQAQWEDIQAKVASGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGDESYGMV 769 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 +++ + PD +++ + G +F+ Y+I+ QI R+V LPSGG +VID TEA+T Sbjct: 770 ESYLSHVS-PDLVDRVRRHVGTSDVFATYRIDEQILKGLDRKVFLPSGGHLVIDRTEAMT 828 Query: 301 AIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +D+N+ + T GG++EET NLEAA+EI RQLRLRD+GG++VIDFIDM ++ V Sbjct: 829 VVDVNTGKYTGAGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELV 888 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 RL E + +DR + Q++ I+ GL++M+R+R+ L E+ C C G G V E Sbjct: 889 LRRLTECLGRDRTKHQVTEITSLGLVQMTRKRIGAGLLEAFSETCDCCKGRGVVIHTE 946 >UniRef50_C7MPQ3 Ribonuclease, Rne/Rng family n=2 Tax=Actinomycetales RepID=C7MPQ3_SACVD Length = 1093 Score = 521 bits (1341), Expect = e-146, Method: Composition-based stats. Identities = 177/586 (30%), Positives = 295/586 (50%), Gaps = 28/586 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 ++R ++ A + + ++ +++ L + + S N+Y G++ + PS+EAAF+D Sbjct: 494 VERTMVVAERGDSTQIGVLEDGVLVEHFVTSSDSGSIVGNVYLGRVQNVLPSMEAAFIDI 553 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + A I+ L G V+VQ+ K+ G+KGA LTT I Sbjct: 554 GRGRNAVLYAGEVDWDAAGLEGKAR---KIEQALTTGDHVLVQVTKDPVGHKGARLTTQI 610 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G +LV +P+ A GISR++ ++R LK+ L + +P G+I+RTA G S E L Sbjct: 611 SLPGRFLVYVPSG-GATGISRKLPENERRRLKDILKRI-VPSDAGVIIRTASEGISEEEL 668 Query: 181 QWDLSFRLKHWEAIKKAA-----ESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPK 235 D+ WE IK+ A + AP L++QE +++V+ RD +D ++++ Sbjct: 669 ARDVRRLKAQWEVIKEKAEAASAKKSGAPALLYQEPDLLVKVIRDLFTEDFKKLVVQGDT 728 Query: 236 VLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDS 295 E R ++ + PD +++ Y G +F+ Y+I+ Q+ A R+V LPSGG +VID Sbjct: 729 AWETIRNYVEHVA-PDLLDRVERYVGTGDVFADYRIDEQLMKALDRKVWLPSGGYLVIDR 787 Query: 296 TEALTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVR 354 TEA+T ID+N+ + T GG++EET NLE+A+EI RQLRLRD+GG+IVIDFIDM Sbjct: 788 TEAMTVIDVNTGKFTGSGGNLEETVTRNNLESAEEIVRQLRLRDIGGIIVIDFIDMVLES 847 Query: 355 HQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVR 414 ++ V RL E + +DR R Q++ ++ GL++M+R+R+ L E+ C C G G + Sbjct: 848 NRELVLRRLTECLSRDRTRHQVAEVTSLGLVQMTRKRVGTGLLEAFSTTCEHCKGRGVIV 907 Query: 415 DNE----SLSLSILRLIEEEALKENTQEVHAIVPVPIASY--LLNEKRSAVNAIETRQDG 468 + + + K E H V A+ ++ SAV+A++ + Sbjct: 908 STDPHRGNGHGNGHHGSRRSRNKSKAGEQHGTKAVEQAAQGPTPEQRESAVSAVQAMANA 967 Query: 469 VRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPA 528 + + + E+ R GE+T T + +E+ A+ + A RPE+ A Sbjct: 968 SKVALTKTSESESDAERADR--SGEDTRTT---VEAQPDESAAVDGQRNGAVPVRPEEEA 1022 Query: 529 LATFAMPDVPPAPTPAEPAAPVVAPA-----PKAAPATPAAPAQPG 569 +T + + A + AA ++P Sbjct: 1023 ASTLSSVAKTSTSAEESAEDRPESTADGQREQRPTTTAAAAVSEPA 1068 >UniRef50_B8IYX2 Ribonuclease, Rne/Rng family n=10 Tax=Desulfovibrionales RepID=B8IYX2_DESDA Length = 1076 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 186/480 (38%), Positives = 281/480 (58%), Gaps = 8/480 (1%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +RM I+ E++ VAL + +L + ++ + K NIYKG I I+ +L+AAFV YG Sbjct: 599 RRMFISVLPGEQVEVALTEDGQLLEYYLDMLHQRKIKGNIYKGVIHNIDTNLQAAFVSYG 658 Query: 62 AERHGFLPLKEIAREYFPANYS---AHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 A ++GFL + EI EY+ ++ P I+ VL+ GQEV+VQ+ KE G+KGA LTT Sbjct: 659 AGKNGFLQIDEIHPEYWLTHHEPAKGKKFPPIQKVLKAGQEVLVQVVKEPTGSKGAFLTT 718 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSA 177 ++SLAG +LVL P + G+SR+++ ++ R+ L+E + ++ +G+G+IVRT G + Sbjct: 719 WLSLAGRFLVLTPGQEQI-GVSRKVDDEEERSRLREMMNGIDPGQGLGVIVRTVSAGTTK 777 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 L+ DL + + W I+K A AP LI+QE + RA RDYL D+GEI +DN V Sbjct: 778 TTLKNDLQYLKRVWRDIRKKATEVTAPSLIYQEPGLSERAVRDYLTDDVGEIWVDNEDVA 837 Query: 238 ELARQHIAALGRPDFSSKIKLYTG-EIPLFSHYQIESQIESAFQREVRLPSGGSIVIDST 296 + R+ + L P S ++L++ ++ + + Q++ + REV LPSGG +V D T Sbjct: 838 QSIRETVNLLF-PRKSDLVRLHSDVRTSMWERFSLRRQLDQIYTREVLLPSGGRLVFDQT 896 Query: 297 EALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 EAL A+DINS + + G+ E A TN+EAA+ IAR L+LRD+GG +VIDFI+M +H Sbjct: 897 EALMAVDINSGKISGKGNFEAMAHKTNMEAAETIARHLKLRDIGGQVVIDFIEMRDKKHI 956 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDN 416 VE LR A++ DRAR + +S FGLLE+ RQR S + CP C GTG R+ Sbjct: 957 IEVEKTLRSAMKNDRARHDVGRMSAFGLLELVRQRTGSSALAITMEPCPACGGTGQRRNL 1016 Query: 417 ESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDG-VRCVIVP 475 E +L LR + E+ ++ +A YLLN KR ++ +E + + P Sbjct: 1017 EWQALQALRELRRMLRAESKEKCVYGTSAELALYLLNHKRDSLREMEQDYGKCLEISVRP 1076 >UniRef50_B5ZYQ5 Ribonuclease, Rne/Rng family n=7 Tax=Alphaproteobacteria RepID=B5ZYQ5_RHILW Length = 965 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 222/727 (30%), Positives = 335/727 (46%), Gaps = 36/727 (4%) Query: 83 SAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRR 142 + I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+ Sbjct: 260 KPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRK 319 Query: 143 IEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESR 201 I DR LKE LE+P+GMG+I+RTAG ++ ++ D + ++ WE ++ + Sbjct: 320 ITNPADRKRLKEIARMLEVPQGMGVILRTAGANRTKVEVKRDFEYLMRLWENVRTLTLAS 379 Query: 202 PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTG 261 AP L+++E ++I R+ RD +DIGEI++ + A+ + L P + ++ Y Sbjct: 380 TAPCLVYEEGSLIKRSIRDLYNKDIGEIIVAGEEGYREAKDFMKML-MPSHAKVVQPYRD 438 Query: 262 EIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFN 321 P+FS IE+Q++ Q +V L SGG ++++ TEAL +ID+NS R+TR IE+TA Sbjct: 439 IHPIFSRSGIEAQLDRMLQPQVTLRSGGYLIMNQTEALVSIDVNSGRSTREHSIEDTALQ 498 Query: 322 TNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISR 381 TNLEAA+EIARQLRLRDL GLIVIDFIDM R+ RAVE +L+E ++ DRARIQ+ IS Sbjct: 499 TNLEAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKNDRARIQVGRISH 558 Query: 382 FGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHA 441 FGLLEMSRQR+ S+ ES+ VC C G+G VR S++L +LR IEE LK T + Sbjct: 559 FGLLEMSRQRIRASVLESTTQVCSHCGGSGHVRSQSSVALHVLRGIEEYLLKNTTHNISV 618 Query: 442 IVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYM 501 IA YLLN KR + E R GV VI + + H+ + R Sbjct: 619 RTTPDIALYLLNHKRQTIIDYENRF-GVAIVIDADGSVGAQHFAIDR------------- 664 Query: 502 LPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPAT 561 EA+ P + E + ++ P P AA + Sbjct: 665 -----GEAVENPVKIETLFNFAAIPEDDDDDIVIEIDEDEDEELEEKPAATERPVAARSE 719 Query: 562 PAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNE 621 + + G +P + + + + + Sbjct: 720 GEGDGN----RKRKRRRRRRGRNGNAEQPASAAGEAGDEDEDGDDESGEGDETTEGATET 775 Query: 622 RRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSR 681 ++ + R + R +A+ + T + + E + + Sbjct: 776 LAESEESQRRKRRRRGKRGGRRNRAEDGSELTVGEAGEDNGGDDGGEEGEADDVSNDGAP 835 Query: 682 RRNDDKRQ-AQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAE--- 737 + A+Q ++ E V+P + R +++ V + A Sbjct: 836 GEAETVEAVAEQAGESQAAAAAVEGAAIVAEDVKPARGRGRRKAAAAPVEEPVAEAAPVA 895 Query: 738 -------EAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRD 790 EA A + A R + P V T E E ++ + Sbjct: 896 EAEPELVEASADLETPAQEEAPEEAKPVRANRESNITSSEPTVKSTRSENGESDDGKPKK 955 Query: 791 NGGMPRR 797 G RR Sbjct: 956 AGWWQRR 962 Score = 106 bits (264), Expect = 5e-21, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 54/77 (70%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+A+ +EE RV +V G R+ + D ES +Q + NIY K+TR+EPSL+AAFVDYG Sbjct: 3 DKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVDYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFAEIHPDYY 79 >UniRef50_UPI0001C31D95 ribonuclease, Rne/Rng family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31D95 Length = 636 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 159/496 (32%), Positives = 254/496 (51%), Gaps = 34/496 (6%) Query: 1 MKRMLINATQQEELRVALVD------------------------GQRLYDLDIESPGHEQ 36 MK+ ++ + + E RVAL++ G R+ +L +E G+ Sbjct: 1 MKKQVLVSVDRGETRVALLEATGDVAPAPRTSGRRRRKPANPSAGYRVAELYLERRGNRS 60 Query: 37 KKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPN----IKD 92 NIYKGK+ + LEAAFVD G E++GFL + EI G+ I D Sbjct: 61 IVGNIYKGKVDNVLAGLEAAFVDIGLEKNGFLHVDEIVIPGVETPRRGRGQGKDGLKIHD 120 Query: 93 VLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELK 152 +LR GQEV+VQ+ K+ KGA L+ +++ G Y+V P G+SRR+ +R L+ Sbjct: 121 LLRPGQEVVVQVVKDPLKTKGARLSMELTIPGRYMVYTPQGEGV-GVSRRLPDKERDRLR 179 Query: 153 EALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESN 212 + A L+L +G G I+RTA G E + ++ + K + + K E AP L+ QE++ Sbjct: 180 KEAARLDL-QGGGAIIRTAAFGARREDFEREMQYLFKLNDVLAKRVEETQAPDLVFQEAD 238 Query: 213 VIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIE 272 + +R RD ++D+ K + P+ +++L+ E PLF + +E Sbjct: 239 LSIRVVRDVFSDHFERAVVDDQKQYQRLVSFFTRTA-PELVDRVELWEEEAPLFERFGVE 297 Query: 273 SQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATR---GGDIEETAFNTNLEAADE 329 +I+ R V LPSGG ++ID EALT ID+N+ G +E+T TNLEAA+E Sbjct: 298 REIQGTLTRRVDLPSGGYLIIDYAEALTVIDVNTGSFIGRGRGARLEDTITRTNLEAAEE 357 Query: 330 IARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSR 389 RQLRLRD+GG+IVIDFIDM R++ AV LR+++ +DR + + IS GL+EM+R Sbjct: 358 AVRQLRLRDIGGIIVIDFIDMARARNRDAVLKTLRKSLDEDRTKTFVVEISPLGLVEMTR 417 Query: 390 QRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIAS 449 Q ++ + E CP C G G +R E++++ R + + A + + + + + + Sbjct: 418 QNVTEGVREIMTRHCPTCGGEGVIRSEETIAIDFERRLRDIAKEHEAEALLLQINPRVGA 477 Query: 450 YLLNEKRSAVNAIETR 465 + +E Sbjct: 478 VFTGNSARILRQLEEE 493 >UniRef50_C6QC83 Ribonuclease, Rne/Rng family n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QC83_9RHIZ Length = 1025 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 224/729 (30%), Positives = 336/729 (46%), Gaps = 15/729 (2%) Query: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 E I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMP Sbjct: 278 EFREGPRSRQRRRPRSYKIQEVIKRRQIILVQVVKEERGNKGAALTTYLSLAGRYTVLMP 337 Query: 132 NNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 N R GGISR+I DR LK LE+PEGMGLI+RTAG ++ + ++ D + L+ Sbjct: 338 NTARGGGISRKITNPQDRRRLKSIAQELEVPEGMGLIIRTAGAARTKQEIKRDFEYLLRL 397 Query: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 WE+++ AP L+++E ++I R+ RD +D+ EI++ + A + L P Sbjct: 398 WESVRDLTLQSTAPSLVYEEGDLIKRSIRDLYNKDVEEIVVAGDAGHQEAADFMKML-MP 456 Query: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 + + Y PLF+ Y +E Q+ + FQ +V L SGG IVI+ TEAL AID+NS ++T Sbjct: 457 SHAKNVVAYREPTPLFTRYGVERQLNAMFQPQVTLRSGGYIVINQTEALVAIDVNSGKST 516 Query: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 R IEETA TNLEAADEIARQL+LRDL GLIVIDFIDM R+ RAVE RL++A+R D Sbjct: 517 REFSIEETALATNLEAADEIARQLKLRDLAGLIVIDFIDMEEKRNNRAVERRLKDALRFD 576 Query: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 RARIQ+ IS FGL+EMSRQRL + E S C C GTG +R ES++L++LR IE+ Sbjct: 577 RARIQLGRISHFGLMEMSRQRLRTGVLEGSTSQCAHCQGTGIIRSTESIALAVLRGIEDA 636 Query: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 + A +A Y+LN KR+ V +E R G ++ +D+++ ++ V R Sbjct: 637 ITAGANGPLVATTTSAVALYILNSKRAYVADMEVRH-GYSVTVLGSDRVQGANFTVER-- 693 Query: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 + + LP E A+ ++ + P+ A M A E Sbjct: 694 ------SAASALPIRRTERAAVNM--DWGFDAEGDAPSYAPSDMDSANEAGDADEDVID- 744 Query: 551 VAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRK 610 + + R + E EQ +E D Sbjct: 745 RETRNGSRDGEENGQRRSRRRRRRGRGGRDRGDDRGEEYSLEQREDDSERDQPATDDAHS 804 Query: 611 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTAD 670 D D S + + + ++ R ++ + +D Sbjct: 805 DFDEPTADIEGLGDQPSVDDGAHAEASNGQGSDEKPNKRRRRGRRGGRRGRERGRDAASD 864 Query: 671 EQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVR 730 + + + E+ ET +R + R+ R++ Sbjct: 865 ATASDTDQPDLDDEGSDEAVEVVEVVEAAEQNEPAETGAPDRAKAPSSGRRPRRVWDVPS 924 Query: 731 YEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRD 790 + A V+++ P+V AP P + + + V ++ + Sbjct: 925 AANGADDAAPEPAEVDQSPEPAPVV-LAPEPAPQPIAAEVEVASEPVAAPAAPARRRHEI 983 Query: 791 NGGMPRRSR 799 PR R Sbjct: 984 GSSEPRIER 992 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 37/76 (48%), Positives = 50/76 (65%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 +MLI+AT EE RV + R+ + D ES + + NIY K+TR+EPSL+AAFVDYG Sbjct: 5 KMLIDATHPEETRVVVQRNGRVEEFDFESAARKLLRGNIYLAKVTRVEPSLQAAFVDYGG 64 Query: 63 ERHGFLPLKEIAREYF 78 RHGFL E+ +Y+ Sbjct: 65 NRHGFLAFNEVHPDYY 80 >UniRef50_B0UJB2 Ribonuclease, Rne/Rng family n=4 Tax=Methylobacterium RepID=B0UJB2_METS4 Length = 1092 Score = 519 bits (1336), Expect = e-145, Method: Composition-based stats. Identities = 193/434 (44%), Positives = 269/434 (61%), Gaps = 5/434 (1%) Query: 71 KEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLM 130 + E + I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLM Sbjct: 388 GDALAEIPDRPRAPRRHYKIQEVIKRRQVILVQVVKEERGNKGAALTTYLSLAGRYSVLM 447 Query: 131 PNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLK 189 PN R GGISR+I DR LKE A LE+P+GMG+I+RTAG ++ ++ D + ++ Sbjct: 448 PNTGRGGGISRKITSAADRKRLKEIAADLEVPDGMGVILRTAGASRTKPEIKRDFEYLMR 507 Query: 190 HWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGR 249 WE++++ S AP L+++E ++I RA RD +DI E+L+ A+ + L Sbjct: 508 LWESVRELTLSSSAPALVYEEGSLIKRAIRDLYNKDIDEVLVAGDDAYREAKDFMRML-M 566 Query: 250 PDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARA 309 P S +K Y PLF+ Y +E Q+++ F V L SGG +VI+ TEAL +ID+NS RA Sbjct: 567 PSQSKVVKPYRDPTPLFARYGVEQQLDAMFSNHVALRSGGYLVINPTEALVSIDVNSGRA 626 Query: 310 TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQ 369 TR DIE+TA TNLEAA+E+ARQLRLRDL GLIVIDFIDM R+ RAVE +L E ++ Sbjct: 627 TREHDIEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVERKLNECLKD 686 Query: 370 DRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEE 429 DRARIQ+ IS FGLLEMSRQR+ + ESS CP C G+G VR S++L ILR IEE Sbjct: 687 DRARIQVGRISPFGLLEMSRQRIRTGVLESSSVPCPHCGGSGFVRATSSVALQILRAIEE 746 Query: 430 EALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRV 489 +K ++ + +A Y+LN+KR + +ETR GV + ++++ P + Sbjct: 747 ALIKSSSHNLILRTRTDVALYILNQKRGHLRELETRF-GVSITVSADERL--PPTSAFHL 803 Query: 490 RKGEETPTLSYMLP 503 +GE LP Sbjct: 804 DRGEPAQPPEPRLP 817 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 37/77 (48%), Positives = 51/77 (66%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+A+ EE RV V G ++ + D E+ Q + NIY K+TR+EPSL+AAFV+YG Sbjct: 3 NKMLIDASHPEETRVVTVKGSKVEEFDFEAANRRQLRGNIYLAKVTRVEPSLQAAFVEYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFSEIHPDYY 79 >UniRef50_Q7CZH1 Ribonuclease E n=7 Tax=Alphaproteobacteria RepID=Q7CZH1_AGRT5 Length = 977 Score = 518 bits (1335), Expect = e-145, Method: Composition-based stats. Identities = 228/712 (32%), Positives = 335/712 (47%), Gaps = 36/712 (5%) Query: 83 SAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRR 142 + I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+ Sbjct: 262 KPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRK 321 Query: 143 IE-GDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESR 201 I DR LKE LE+P+GMG+I+RTAG ++ ++ D + ++ WE ++ + Sbjct: 322 ITQPTDRKRLKEIARDLEVPQGMGVILRTAGANRTRVEIKRDFEYLMRLWENVRTLTLNS 381 Query: 202 PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTG 261 AP L+++E ++I R+ RD +DI EI++ + A+ + L P + ++ Y Sbjct: 382 TAPCLVYEEGSLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKML-MPSHAKVVQPYRD 440 Query: 262 EIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFN 321 P+FS IE+Q++ Q +V L SGG ++I+ TEAL AID+NS R+TR IEETA Sbjct: 441 IHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHSIEETALT 500 Query: 322 TNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISR 381 TNLEAA+E+ARQLRLRDL GL+VIDFIDM R+ R+VE +L++ ++ DRARIQ+ IS Sbjct: 501 TNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISH 560 Query: 382 FGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHA 441 FGLLEMSRQR+ S+ ES+ VC C GTG VR S++L +LR +EE L+ T + Sbjct: 561 FGLLEMSRQRIRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGVEEYLLRNTTHNITV 620 Query: 442 IVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYM 501 A YLLN KR ++ E R GV +I + + H+ + R Sbjct: 621 RCTPETALYLLNHKRGSIVDYEGRF-GVAIIIAADSSVGAQHFAIDR------------- 666 Query: 502 LPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPAT 561 EA+ P + E + P + +V E A Sbjct: 667 -----GEAVENPVKIESLIQMLPSFVEEEDDIVIEVEEDEEEEEIVK-----------AE 710 Query: 562 PAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNE 621 A P Q + Q + D D E Sbjct: 711 SAQPRQQPQGDNGEDGKRKRKRRRRRRGKGGQNEQNGALDGQSGNDAEDDDAEGDDDGVE 770 Query: 622 RRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSR 681 + ++ E N N + +++ R R+ + A AD + Sbjct: 771 TDEAGADSDENGANEAANADEDGKRKRRRRGKRGGRRNRDDALDAAGADGETEGEGAEGE 830 Query: 682 RRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVV 741 + ++ A A V E V + EE P +PRR ++ + + + V Sbjct: 831 EVSTAAPVTEEPATAAEVVEGVVADVVAEE--APKKPRRTRKAKTKTETETEEAPKAETV 888 Query: 742 APVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGG 793 V E V EP+V EA + +V R N G Sbjct: 889 ETV--EPVIIEPVVVEATVVDVAIEEVGEASAGLAPGADVPGTEEKTRANRG 938 Score = 109 bits (271), Expect = 9e-22, Method: Composition-based stats. Identities = 40/77 (51%), Positives = 54/77 (70%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+A+ +EE RV +V G R+ + D ES +Q + NIY K+TR+EPSL+AAFVDYG Sbjct: 3 DKMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFAEIHPDYY 79 >UniRef50_Q0BVH1 Ribonuclease E n=2 Tax=Acetobacteraceae RepID=Q0BVH1_GRABC Length = 949 Score = 518 bits (1334), Expect = e-145, Method: Composition-based stats. Identities = 220/702 (31%), Positives = 327/702 (46%), Gaps = 33/702 (4%) Query: 86 GRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145 I++V++ Q +++Q+ KEERGNKGAAL+T+ISLAG Y VLMPN+PR GG+SR+I Sbjct: 250 RNYKIQEVIKRRQILLIQVVKEERGNKGAALSTYISLAGRYCVLMPNSPRGGGVSRKITS 309 Query: 146 D-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAP 204 DR LK+ + +LE+P GMG+IVRTAG + + D + L+ W+ I+ AP Sbjct: 310 ATDRRRLKDIIGALEIPRGMGIIVRTAGGNRPKAEIMRDCEYLLRLWDDIRDITLRSSAP 369 Query: 205 FLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGE-- 262 LIH+E+++I RA RD I E+L+D + AR + L P + K+ + + Sbjct: 370 ALIHEEASLIKRAIRDVYTSTIEEVLVDGEEGWRAARDIMRML-MPSHARKVICWNADKE 428 Query: 263 ---IPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETA 319 PLF+HYQ+ESQ+++ V L SGG +VI+ EAL AID+NS R+T+ IEETA Sbjct: 429 RAGQPLFAHYQVESQLDAILAPNVSLKSGGYLVINQAEALVAIDVNSGRSTKERGIEETA 488 Query: 320 FNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHI 379 TNLEAADE+ARQLRLRDL GLIVIDFIDM +H VE RL+EA++ DRARIQ+ I Sbjct: 489 LRTNLEAADEVARQLRLRDLAGLIVIDFIDMESRKHNGMVERRLKEALKNDRARIQVGQI 548 Query: 380 SRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEV 439 S FGLLEMSRQRL PSL E+S CP C+G G VR E S+ +LR IEEE + E+ Sbjct: 549 SSFGLLEMSRQRLRPSLTETSMITCPHCNGLGLVRTTEGASVHVLRAIEEEGARRRYAEI 608 Query: 440 HAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRK---GEETP 496 +A Y+LN +R + +E+R G++ + + Q + ++R + Sbjct: 609 MVHAAADVAFYILNNRRDFLATLESRF-GMKVLFSADTQFSGSQLRIEKIRARAMEDVVR 667 Query: 497 TLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPK 556 T + + A A A+P A Sbjct: 668 TPLIGVADPQPSVAGDLYDFADASDGFATFEAAPVAALPVAVQAEPVGTAEEGNNGGRLP 727 Query: 557 AAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNR 616 +A G R + + + + + ++ R + Sbjct: 728 SAEGDSEPGPDDGERRRRRRRRRRGNRRNDGAENGMDARSEQDENGNPVEEGEGVRHGDA 787 Query: 617 R------DRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTAD 670 + E E S + + + QA + R Sbjct: 788 NTSALPVETTELTVAGVASKETSAETQGDAIDGTQAVSGEFGDEFAEDSRPRRRGRRGGR 847 Query: 671 EQQAPRRERSRRRNDDKRQAQQEAK---ALNVEEQSVQETEQEERVRP------VQPRRK 721 ++ P + + A ++ V + ++ +R + R Sbjct: 848 GRRQPAQANGHDAGEVAYTGPTPADPFGQQPLDVFDVMDGIEQPMIRDGKVDQGSRSERH 907 Query: 722 QRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRT 763 + + V + AE + P+ +P+V E APR Sbjct: 908 PDLVPEPVVVSEEQAEPYIAPPI-------QPVVIEDTAPRA 942 Score = 113 bits (283), Expect = 4e-23, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 55/77 (71%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLI+A+ EE RV ++DG RL D D+E+ +Q K NIY K+ R+EPSL+AAFV+YG Sbjct: 51 KKMLIDASHAEETRVVVMDGNRLEDFDVEAASRKQIKGNIYLAKVVRVEPSLQAAFVEYG 110 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 111 GNRHGFLAFSEIHPDYY 127 >UniRef50_D2RM73 Ribonuclease, Rne/Rng family n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RM73_ACIFE Length = 476 Score = 518 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 150/488 (30%), Positives = 257/488 (52%), Gaps = 29/488 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + + + + EE R+ V+ +L D +E + N+Y+ ++ + P ++AAFVD Sbjct: 1 MNTIFV-SVRPEETRMGTVEDDQLRDYAVERNSADNLVGNVYRARVCNVVPGIQAAFVDL 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 ++GFL LK+ + L EGQ ++VQ+ K+ RG+KG A+T I Sbjct: 60 NTGKNGFLTLKK------------------GETLSEGQMLLVQVVKDARGSKGPAVTRDI 101 Query: 121 SLAGSYLVLMPNNPRAGGISRRIE-GDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 +L G Y+VL P R +SR+I R EL++ L LP+ MGL++RTA + Sbjct: 102 TLPGRYVVLEPYGSRV-SLSRKISCKTKRKELRDWAREL-LPDHMGLVLRTAAAHAEEDE 159 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 ++ DL L++W+ + + ++ P L+++E ++ +R RDY+ + I++D K Sbjct: 160 IRADLEQLLRNWDVLVRRSKVGRGPQLLYRELDLAIRLVRDYVTDRVERIIVDEEKTCRR 219 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 ++ + +G P +KLY G+ LF+ Y+++ IES R V LP GG +VID TEA+ Sbjct: 220 LQEMLRDMGLPGIQ--VKLYRGKEDLFTFYRLDEDIESLSDRVVWLPGGGYLVIDCTEAM 277 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+NS + + G D + T+ TN EAA EIARQLRLRD+GG+IV DFIDM Q + Sbjct: 278 TVIDVNSGKFSTGADRDATSMATNREAAREIARQLRLRDIGGIIVADFIDMDREEEQEEI 337 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 L++ D+ + ++ +++ L+EM+R + +L + CP C G+G V E++ Sbjct: 338 LQILKKEFASDKMKPKVIDLTQLNLVEMTRMKARKNLAGILYTTCPLCGGSGRVESPETV 397 Query: 420 SLSILRLIEEEALKENTQE-VHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 + I R + L+ + V + S+L ++ + +E + + Sbjct: 398 YVEIRRRLRSTFLQGKMSHALLLTVHPLVYSWL---RQQGLRDMEQEFH-CSLKLASDPS 453 Query: 479 METPHYHV 486 +E + + Sbjct: 454 LEVGVFTL 461 >UniRef50_UPI00003842F2 COG1530: Ribonucleases G and E n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI00003842F2 Length = 836 Score = 518 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 198/476 (41%), Positives = 285/476 (59%), Gaps = 6/476 (1%) Query: 86 GRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-E 144 I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GG+SR+I Sbjct: 178 RNYKIQEVIKRRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNTARGGGVSRKIVS 237 Query: 145 GDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAP 204 DR LK +++P+GM +I+RTAG +S ++ D + L+ W+++++ AP Sbjct: 238 ATDRRRLKSIANEMDIPDGMAVIIRTAGSERSKTEIKRDYEYLLRMWDSVRELTLKSSAP 297 Query: 205 FLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEI- 263 L+++E+++I R+ RD +DI E+L+D + LA+ ++ L P + K++ Y + Sbjct: 298 ALVYEEASLIKRSIRDLYSRDIDEVLVDGDEGYRLAKDYMRMLT-PSHAKKVQPYKDPVM 356 Query: 264 PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTN 323 P+F YQ+E+Q+++ V+L SGG IVI TEAL AID+NS RAT+ IEETA TN Sbjct: 357 PMFHRYQVEAQLDAMHSPVVQLKSGGYIVISQTEALVAIDVNSGRATKERHIEETALKTN 416 Query: 324 LEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFG 383 +EAADE+ARQLRLRDL GLIVIDFIDM R+ AVE RL+EA++ DRARIQ+ IS FG Sbjct: 417 MEAADEVARQLRLRDLAGLIVIDFIDMEENRNNHAVERRLKEALKNDRARIQVGKISAFG 476 Query: 384 LLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIV 443 LLE+SRQRL PSL E++ CP C GTG VR ES ++ ILR IEEE ++ + EV V Sbjct: 477 LLELSRQRLRPSLQETTFSPCPHCGGTGLVRSVESAAVHILRAIEEEGIRRRSSEVTVYV 536 Query: 444 PVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLP 503 IA Y+LN+KRSA+ AIE R + + +D + P + + +V+ + Sbjct: 537 SSAIALYILNQKRSALAAIEERYE-FDVFLSGDDTLIPPAFRMDKVKAEFRPDEPARTAI 595 Query: 504 KLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAP 559 + + E + + A P+ P P P + Sbjct: 596 SM--DDAVHRPPAEPEADEAEPEDEEEVEARPERAPRARDERPREDRGEEDPDSEA 649 Score = 104 bits (260), Expect = 1e-20, Method: Composition-based stats. Identities = 42/75 (56%), Positives = 53/75 (70%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 MLI+AT EE RV +V+G RL +LD+E+ Q K NIY K+ R+EPSL+AAFV+YG Sbjct: 1 MLIDATHPEETRVVVVNGTRLEELDVETSTKRQLKGNIYLAKVVRVEPSLQAAFVEYGGN 60 Query: 64 RHGFLPLKEIAREYF 78 RHGFL EI +YF Sbjct: 61 RHGFLAFSEIHPDYF 75 >UniRef50_C9RQU1 Ribonuclease, Rne/Rng family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQU1_FIBSS Length = 511 Score = 518 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 166/511 (32%), Positives = 264/511 (51%), Gaps = 14/511 (2%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 KR ++ + E R+A+++ L +L +E + NIYKG + ++ P+L+AAF+D G Sbjct: 6 KRGILISKTPYEKRIAIMEDGELAELVVEGVSSNRVLGNIYKGVVQKVLPALKAAFIDIG 65 Query: 62 AERHGFLPLKEIA---------REYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNK 112 E+ GFL ++ A +I ++L+EGQE++VQ+ KE K Sbjct: 66 LEKAGFLHQEDAMDRNELLRREYGDDDDEGDASKEISIDEILQEGQEIMVQVVKEPISTK 125 Query: 113 GAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAG 172 GA LTT +S AG +LV MP G R + R E K+ + L+ +G IVRT G Sbjct: 126 GARLTTHLSFAGRFLVCMPGANFVGVSKRERDPVKRREFKKVVRRLK-GRDVGYIVRTNG 184 Query: 173 VGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILID 232 + +S + + WE K E+ P I++ES+ I + R+Y + + ID Sbjct: 185 LNESEFEINKQMRELESKWEQTKYNFETMPPETCIYEESDSIEQTVREYFGDNTDYVYID 244 Query: 233 NPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIV 292 N R ++ L PD K+KL++ LF +++IE+ + QR+V LP GG++V Sbjct: 245 NRDEYFALRDYLKVLS-PDKLDKVKLWSSSESLFEYFKIENDYARSLQRQVPLPRGGNLV 303 Query: 293 IDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTP 352 I+ TEAL +ID+N+ G D + TNL+A EIA+QLRLRD+GGLI+IDFIDM Sbjct: 304 IEQTEALVSIDVNTGPKVHGKDQGKIILETNLDACHEIAKQLRLRDVGGLIIIDFIDMET 363 Query: 353 VRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGT 412 + AV R+A+R+D+A I + IS+FGL+E++R+R+ +L CP C+G+G Sbjct: 364 DEDREAVYQEFRKAIRRDKAPISPAPISQFGLMEVTRKRVRVNLMTEKTECCPVCNGSGR 423 Query: 413 VRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCV 472 + ES I R + K +EV +V P+ L + N +E + + ++ Sbjct: 424 IATLESTLGMIDRWLARAHTKGRLREVTLVVSAPVIDVLCKDLNRMFNYLEYKHN-IKIS 482 Query: 473 IVPNDQMETPHYHVLRVRKGEETPTLSYMLP 503 +V ++ + + K E T Y Sbjct: 483 LVEDEYAHINQFWMY--DKNNEDITDLYNFA 511 >UniRef50_Q6AIU3 Probable RNAse E n=1 Tax=Desulfotalea psychrophila RepID=Q6AIU3_DESPS Length = 883 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 208/505 (41%), Positives = 317/505 (62%), Gaps = 13/505 (2%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 R+LINA + EE R+AL++ RL + + + Q K NIYK K+ +E +L+AAFVDYG Sbjct: 380 RLLINAEEPEECRLALLEDGRLESIHVSTVTRAQTKNNIYKAKVVAVEANLQAAFVDYGT 439 Query: 63 ERHGFLPLKEIAREYFPANYSAHGRPN----------IKDVLREGQEVIVQIDKEERGNK 112 ++GFLP EI EY+ A+ S R N I+DV+ GQE++VQ+ KEE G K Sbjct: 440 VKNGFLPFSEIHPEYYRADLSESARKNVEERRWRRLKIEDVMARGQELLVQVVKEEVGKK 499 Query: 113 GAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRT-ELKEALASLELPEGMGLIVRTA 171 GA +TT++SL G +VLMP + A GISR+I G++R +L++ + SL +PEG G IVRTA Sbjct: 500 GANMTTYLSLPGRCVVLMPGSDSA-GISRKIVGEERRSQLRDTMRSLGIPEGTGWIVRTA 558 Query: 172 GVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILI 231 V + EAL D+++ LK WE +++ + LI+++ ++R R++ I EIL+ Sbjct: 559 SVDINEEALARDVTYLLKLWEDVREKGQEIKDVGLIYEDHRSVMRFLREHYDPSIQEILV 618 Query: 232 DNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSI 291 D P LE + ++ L + K++L+ G P+F+ + +E QIES +Q +V LPSGGSI Sbjct: 619 DAPLALEQVNEFVSMLPANQQNVKVRLHKGSRPIFNQFSVEDQIESIYQPQVSLPSGGSI 678 Query: 292 VIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMT 351 VID TEAL AID+NS ++G + +E+ F N+EAA E ARQLRLRDLGGL+V+DFIDM Sbjct: 679 VIDPTEALVAIDVNSGSTSKGKNFDESIFQANMEAASEFARQLRLRDLGGLVVVDFIDMR 738 Query: 352 PVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTG 411 +H AVE +++ A+++D+A++ + IS+FGL+++SRQ+L + ++ VC C G G Sbjct: 739 NKKHINAVEKQVKIAMKRDKAKVDFTRISKFGLMQISRQKLGSPIEAGAYRVCQHCKGRG 798 Query: 412 TVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRC 471 VR E+L+L LR I+ A ++ ++ P+ +ASYLLN KR + +E + V Sbjct: 799 IVRAVETLALFYLRRIQTGASRKPVVKIECHFPLDVASYLLNNKRQEITEMENNNE-VEI 857 Query: 472 VIVPNDQMETPHYHVLRVRKGEETP 496 +IV + + ++ R +E Sbjct: 858 MIVVESRFKPAENEIVFHRAEKEKE 882 >UniRef50_B2GGD5 Putative ribonuclease n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GGD5_KOCRD Length = 1145 Score = 517 bits (1332), Expect = e-145, Method: Composition-based stats. Identities = 148/422 (35%), Positives = 244/422 (57%), Gaps = 9/422 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 ++R ++ +++ +++ +++ L + + + N+Y GK+ + PS+EAAFVD Sbjct: 330 VERTMLVRQKEDRIQIGVLEDGILAEHFVSHTTQDSLIGNVYVGKVQNVLPSMEAAFVDI 389 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + H I++ L+ G V+VQ+ K+ G+KGA LT+ + Sbjct: 390 GRGRNAVLYAGEVDWDAAE---MGHKPRKIENALKSGDTVLVQVTKDPVGHKGARLTSQV 446 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLV +P GISR++ +R LK+ L LPEG G+IVRTA G S L Sbjct: 447 SLPGRYLVYVPGGSMT-GISRKLPDVERQRLKKILKD-RLPEGAGVIVRTAAEGASETEL 504 Query: 181 QWDLSFRLKHWEAIKKAAESRP--APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 D++ WE I++ A S AP L++ E ++ ++ RD +D +++ + + Sbjct: 505 TNDINRLRSQWEQIQEKAGSTKTLAPELLYAEPDLTIKTVRDVFNEDFTAMVVQGEQAWD 564 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 ++ + PD +++ +T + LF H ++E QI+ A +R+V LPSGGS+VID TEA Sbjct: 565 NIEAYVTYVA-PDLLDRLQRWTEDEDLFEHMRVEEQIQKALERKVFLPSGGSLVIDRTEA 623 Query: 299 LTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 +T +D+N+ + T GG++EET NLEAA+EI RQLRLRD+GG+IV+DFIDM ++ Sbjct: 624 MTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRD 683 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V RL E + +DR + Q++ ++ GL++M+R+R+ L E C C+G G + + Sbjct: 684 LVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFSEPCEECAGRGVLVHDH 743 Query: 418 SL 419 L Sbjct: 744 PL 745 >UniRef50_P0A9J2 Ribonuclease G n=523 Tax=cellular organisms RepID=RNG_ECO57 Length = 489 Score = 517 bits (1330), Expect = e-144, Method: Composition-based stats. Identities = 158/480 (32%), Positives = 256/480 (53%), Gaps = 8/480 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M L+ E RVA +DG L ++ IE NIYKG+++R+ P ++AAFVD Sbjct: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 Query: 61 GAERHGFLPLKEIARE---YFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALT 117 G ++ FL +I +I +++R+GQ+++VQ+ K+ G KGA LT Sbjct: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 Query: 118 TFISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKS 176 T I+L YLV MP G+S+RIE + +R LK+ +A E G I+RTA G Sbjct: 121 TDITLPSRYLVFMPGASHV-GVSQRIESESERERLKKVVAE-YCDEQGGFIIRTAAEGVG 178 Query: 177 AEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKV 236 L D ++ + W + + + + ++ E + R RD+ ++ I +D+ Sbjct: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 Query: 237 LELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDST 296 E + + P+ +SK++ YTG P+F + +E++I+ A +R+V L SGG ++ID T Sbjct: 239 YEALLEFTSEY-IPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 Query: 297 EALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 EA+T +DIN+ ++++T FNTN+EA IARQLRLR+LGG+I+IDFIDM H+ Sbjct: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDN 416 R V + L +A+ +DR + ++ S GL+EM+R+R S+ + CP C G GTV+ Sbjct: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 Query: 417 ESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQ-DGVRCVIVP 475 E++ I+R I ++ +A L E+ ++ +E V+ I P Sbjct: 418 ETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEIFVGKQVKVQIEP 477 >UniRef50_C6JJB6 Ribonuclease G and E n=2 Tax=Fusobacterium RepID=C6JJB6_FUSVA Length = 489 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 155/449 (34%), Positives = 252/449 (56%), Gaps = 9/449 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M +++IN + + R A+++ ++ ++ IE + +IYKGK+ + P +E+AFV+ Sbjct: 1 MNQIVINIDEF-QSRAAIIEDGKVVEILIEREEEGRINGSIYKGKVANVLPGMESAFVNI 59 Query: 61 GAERHGFLP---LKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALT 117 G E++GFL L+E +Y ++ I+D+L G +V+VQI E RG KGA +T Sbjct: 60 GLEKNGFLYVNDLREFEEKYLDGILNSSRP--IEDILNVGDDVVVQILNEPRGTKGARVT 117 Query: 118 TFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSA 177 T ++ G YLVLMPNN IS++I+ + E E++ PE MG+I+RTA GKS Sbjct: 118 THFTIPGKYLVLMPNNDHI-AISKKIKDEKERERLESIFKEIKPENMGVIIRTAAFGKSE 176 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 + ++ + +K WE I+K + ++++++ +I RD DI E+++DN V Sbjct: 177 FHFEREIEYLVKKWEDIEKKIKGAKIGEVLYKDNGIITTVLRDIFSNDIDELIVDNEDVY 236 Query: 238 ELARQHIAALGRPDFSSKIKLYTG--EIPLFSHYQIESQIESAFQREVRLPSGGSIVIDS 295 +I A +KIKLY E +F Y I +I+ A V L GG +VI Sbjct: 237 WEVIDYINAFSEKTLKTKIKLYKDGKEKDIFDLYGINEEIDKALNEVVWLECGGYLVIQK 296 Query: 296 TEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRH 355 TEAL +ID+N+ + T ++EET NTN+EAA EI RQLRLR+ GG+I+IDFIDM Sbjct: 297 TEALISIDVNTGKNTGSLNLEETVVNTNIEAAKEIPRQLRLRNFGGIIIIDFIDMRVEED 356 Query: 356 QRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRD 415 + V L + +++DR + I H + GL+EM+R+R L VCP C+GTG ++ Sbjct: 357 KIKVLEALEKHLQKDRIKNNIVHFTDLGLVEMTRKRSGKPLAYYFQEVCPCCNGTGKIKS 416 Query: 416 NESLSLSILRLIEEEALKENTQEVHAIVP 444 ++L +++ I+ + ++ + + Sbjct: 417 KDALIHELMKEIKICSEDKDISTIKVRLS 445 >UniRef50_A0JXK2 Ribonuclease, Rne/Rng family n=4 Tax=Actinomycetales RepID=A0JXK2_ARTS2 Length = 1113 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 149/440 (33%), Positives = 246/440 (55%), Gaps = 9/440 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R +I + + +++ +++ L + + + N+Y GK+ + PS+EAAFVD Sbjct: 381 VDRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDI 440 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + + I++ L+ G V+VQ+ K+ G+KGA LT+ I Sbjct: 441 GRGRNAVLYAGEVNWDAVNLE---GKQRRIENALKSGDSVLVQVTKDPVGHKGARLTSQI 497 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLV +P GISR++ +R LK L LPE G+IVRTA G S E L Sbjct: 498 SLPGRYLVYVPGGSMT-GISRKLPDVERNRLKRILKD-RLPEDAGVIVRTAAEGASEEEL 555 Query: 181 QWDLSFRLKHWEAIKKAAESRP--APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 D++ WE I+ A S AP L++ E ++ ++ RD +D ++++ + + Sbjct: 556 THDINRLRAQWEGIESQATSTKILAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGEEAWD 615 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 ++ + PD +++ +T + +F+ ++I+ QI A R+V LPSGGS+VID TEA Sbjct: 616 TIEAYVTYVA-PDLVGRLEKWTKDTDIFAAWRIDEQIHKALDRKVFLPSGGSLVIDRTEA 674 Query: 299 LTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 +T +D+N+ + T GG++EET NLEAA+E+ RQLRLRD+GG+IVIDFIDM ++ Sbjct: 675 MTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRD 734 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V R+ E + +DR + Q++ ++ GL++M+R+R+ L E C C+G G V +E Sbjct: 735 LVLRRMVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEACAGRGIVTHDE 794 Query: 418 SLSLSILRLIEEEALKENTQ 437 + + E + T+ Sbjct: 795 PVEHRRANTVAAEHHVQRTE 814 >UniRef50_A8IFL2 Ribonuclease E and G n=6 Tax=Rhizobiales RepID=A8IFL2_AZOC5 Length = 1093 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 220/696 (31%), Positives = 339/696 (48%), Gaps = 12/696 (1%) Query: 86 GRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145 I++V+R Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I Sbjct: 376 RTYKIQEVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITN 435 Query: 146 D-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAP 204 DR LKE + LE+PEGMG+I+RTAG ++ ++ D + L+ WE +++ + AP Sbjct: 436 AVDRKRLKEVVQELEVPEGMGIILRTAGANRTKVEIKRDFEYLLRLWETVRELTLTSSAP 495 Query: 205 FLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIP 264 L+++E ++I RA RD ++I EI + + + AR + L P + + Y P Sbjct: 496 NLVYEEGSLIKRAIRDLYSKEIDEIHVAGEEGFQEARDFMRML-MPSHAKNVIAYREPQP 554 Query: 265 LFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNL 324 +F+ Y +E Q+++ F V+L SGG IVI+ TEAL +ID+NS RATR IE+TA TN+ Sbjct: 555 IFAKYGVEHQLDAMFSPVVQLKSGGYIVINPTEALVSIDVNSGRATREHHIEDTALKTNM 614 Query: 325 EAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGL 384 EAA+EIARQLRLRDL GLIVIDFIDM R+ R+VE +L++ ++ DRARIQ+ IS FGL Sbjct: 615 EAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRSVERKLKDCLKNDRARIQVGRISHFGL 674 Query: 385 LEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVP 444 +EMSRQR+ + ESS VCP C GTG VR S++L +LR +EE+ L+ + + A Sbjct: 675 MEMSRQRIRTGVLESSIEVCPVCGGTGHVRSAASVALQLLRALEEQLLRSASHNLIARTR 734 Query: 445 VPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPH-YHVLRVRKGEETPTLSYMLP 503 +A Y+LN KR+ + +E R V ++ ++ + + + + + Sbjct: 735 GEVALYVLNHKRAHLRELEDRF-SVTLIVQADESVTGHQPFLIEKGEIAAPPAPAPRLSS 793 Query: 504 KLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPA 563 +H +++ + E E + E + + P + Sbjct: 794 AVHPDSILPDEDYEDDEEELEESAEAEAEDESEGEAVASERGDDQPRKRRRRRRRRGGER 853 Query: 564 APAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERR 623 + + G++ + EA+ E + RR R RR Sbjct: 854 ESR-----ADDANGSDEDGAEGDDETESASGEGDDEARAEGEDRSEADSAERRRRRRGRR 908 Query: 624 DTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRR 683 R R EG + +A ++AE + +A + Q+ + Sbjct: 909 GGRRNRREGEAGSGDETSADAEADGESAEGEGLESDGQEPARALSFPGQETFAEIEATSS 968 Query: 684 NDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAP 743 +A + + + E + P + R +V E+ AP Sbjct: 969 ESPSHEASSNEPPVTADPPLPEPVVVPEVLAPAPAAEPEAPAAPAPRRRSTVREK---AP 1025 Query: 744 VVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPE 779 V +A AP TE P+ ++ E Sbjct: 1026 VSGAASSAPTEAAPAPQAPTEPASEPVEAAPESPVE 1061 Score = 89.8 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 39/77 (50%), Positives = 53/77 (68%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+AT EE RV +V G R+ + D ES +Q + NIY K+TR+EPSL+AAF++YG Sbjct: 3 NKMLIDATHPEETRVVVVRGNRVEEFDYESASRKQLRGNIYLAKVTRVEPSLQAAFIEYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFSEIHPDYY 79 >UniRef50_B8HA23 Ribonuclease, Rne/Rng family n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HA23_ARTCA Length = 1151 Score = 515 bits (1327), Expect = e-144, Method: Composition-based stats. Identities = 186/713 (26%), Positives = 311/713 (43%), Gaps = 29/713 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R +I + + +++ +++ L + + + N+Y GK+ + PS+EAAFVD Sbjct: 431 VDRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDI 490 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ E + I++ L+ G V+VQ+ K+ G+KGA LT+ I Sbjct: 491 GRGRNAVLYAGEVNWEAVNLE---GKQRRIENALKSGDTVLVQVTKDPVGHKGARLTSQI 547 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLV +P GISR++ +R LK L LPE G+IVRTA G S E L Sbjct: 548 SLPGRYLVYVPGGSMT-GISRKLPDVERNRLKRILKD-RLPEQAGVIVRTAAEGASEEEL 605 Query: 181 QWDLSFRLKHWEAIKKAAESRP--APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 D++ WE I+ + S AP L++ E ++ ++ RD +D ++++ + + Sbjct: 606 THDINRLRAQWEGIESQSSSTKVLAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGEEAWD 665 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 ++ + PD +++ +T + +F+ ++I+ QI A +R+V LPSGGS+VID TEA Sbjct: 666 TIEAYVTYVA-PDLVGRLEKWTKDQDIFAAWRIDEQIHKALERKVFLPSGGSLVIDRTEA 724 Query: 299 LTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 +T +D+N+ + T GG++EET NLEAA+E+ RQLRLRD+GG+IVIDFIDM ++ Sbjct: 725 MTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRD 784 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V R+ E + +DR + Q++ ++ GL++M+R+R+ L E C C+G G V ++ Sbjct: 785 LVLRRMVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEACAGRGVVTHDD 844 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIE-TRQDGVRCVIVPN 476 + V A V + + R+ N E R +G R + Sbjct: 845 PVEHR------------RANIVAAEQHVHRSDARPSGNRNEGNRSEGQRNEGQRTDVNQE 892 Query: 477 DQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPD 536 + R+G A + + AER + A Sbjct: 893 GNRGE-----RKRRRGRGGQAAEPAPAPAAVAAHPVQPDPHEAERHAKAEATRLALANIA 947 Query: 537 VPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAP 596 P A G+ +R L F G + P + A Sbjct: 948 AAAHAAHLHDDEVAARQTPALQDAGTTEKHDDGMPARPAAVLT--FGGEKVALPFVEHAD 1005 Query: 597 KAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRES 656 + +A P DR + + S + + + + + Sbjct: 1006 EHQASPALSLDRLAEAFAHLGQPASPVGSPSRESGTAQAAPAAPEPAEEVASAPRQPVAA 1065 Query: 657 RQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQ 709 A A TAD + R R+R + + A + + E Sbjct: 1066 AAPARELNAAATADPSRQRRPRRNRSASRAQGAANATTVEHHESVPAASEGHS 1118 >UniRef50_B8CXZ3 Ribonuclease, Rne/Rng family n=1 Tax=Halothermothrix orenii H 168 RepID=B8CXZ3_HALOH Length = 489 Score = 515 bits (1326), Expect = e-144, Method: Composition-based stats. Identities = 170/490 (34%), Positives = 272/490 (55%), Gaps = 7/490 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M +I + +E R A++ L D+ IE +++ N+Y+ ++ + P ++AAFVD Sbjct: 1 MVNQIIINSGIKEKRAAILMDNVLEDIVIELDSYKKIVGNVYRARVIDVLPGMQAAFVDI 60 Query: 61 GAERHGFLPLKEIAREYFPANYS--AHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 G +++ FL + +I G+ I+ VL+ GQE++VQ+ KE KGA +T Sbjct: 61 GYDKNAFLHVSDIYPLLDEKQLKLKKEGKLGIQHVLQPGQELMVQVVKEPIYEKGAKVTC 120 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSA 177 ISL G YLVL+P R ISR+I+ D+R LK+ + L+ P MGLI+RT K A Sbjct: 121 KISLPGRYLVLLPGEYRT-AISRKIKDFDERDRLKKIVGKLKDP-DMGLIIRTNSRYKKA 178 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 + L+ D S+ + W IK+ + AP LI++ ++++ RDYL +D+ ++LID+ Sbjct: 179 DLLELDYSYLKRTWTQIKENYNNSKAPDLIYEHASLLKTIVRDYLNKDVDKVLIDDESDY 238 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 + + ++ PD ++I LY ++P+F Y IE ++E A ++++ L SGG IVI+ TE Sbjct: 239 RVLLE-LSEKLAPDLKNRINLYNKKMPIFHVYGIEKELERAIRKKIWLDSGGFIVIEQTE 297 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 AL AID+N+ + T + T TNLEAA EIARQLRLRD+GG+I+IDFIDM RHQ+ Sbjct: 298 ALVAIDVNTGKYTGKKNAARTILKTNLEAAREIARQLRLRDIGGIIIIDFIDMKERRHQQ 357 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V + + +DR+ I +++ GLLEM+RQ++ LGE C C G G + Sbjct: 358 EVLETFEKELAKDRSVTSIQGLTKLGLLEMTRQKVREGLGELMQKECSYCRGKGLILSAN 417 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 S++ SI+R I+ + E + S L + + I ++ GV + P + Sbjct: 418 SVAESIIRNIQLKKASEEFSRAVVECHPLVVSSLKGDNGEVLQKI-FKKTGVSLELKPVN 476 Query: 478 QMETPHYHVL 487 + Y + Sbjct: 477 SLHIEKYRIN 486 >UniRef50_D1SD19 Ribonuclease, Rne/Rng family n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1SD19_9ACTO Length = 1092 Score = 515 bits (1325), Expect = e-144, Method: Composition-based stats. Identities = 152/418 (36%), Positives = 246/418 (58%), Gaps = 7/418 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R+++ + + ++A+++ L + + N+Y GK+ + PS+EAAFVD Sbjct: 535 VDRVMVVRQRGDRTQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQNVLPSMEAAFVDI 594 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + A +I+ LR G V+VQ+ K+ G+KGA LT+ I Sbjct: 595 GRGRNAVLYAGEVNWDATGLEGRAR---SIEQALRSGDSVLVQVTKDPIGHKGARLTSHI 651 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +L+G +LV +PN A GISR++ +R L++ L L +P+G G+IVRTA G S + L Sbjct: 652 ALSGRHLVYVPNGN-ASGISRKLPDTERKRLRDVLKKL-VPDGAGVIVRTAAEGASEDEL 709 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 D+ WE I+ A AP L+++E ++++R RD +D E++I+ +L Sbjct: 710 ARDVKRLQAQWEDIQAKATEGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGEPAYDLV 769 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 +++ + PD ++++ + G +F+ Y+I+ QI R+V LPSGGS+VID TEA+T Sbjct: 770 ESYLSHVS-PDLVARLRRHAGVADVFAEYRIDEQILKGLDRKVFLPSGGSLVIDRTEAMT 828 Query: 301 AIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +D+N+ + T GG++EET NLEAA+EI RQLRLRDLGG++VIDFIDM ++ V Sbjct: 829 VVDVNTGKYTGSGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRELV 888 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 RL E + +DR + Q++ I+ GL++M+R+R+ L E+ C C G G + E Sbjct: 889 LRRLTECLGRDRTKHQVTEITSLGLVQMTRKRIGAGLLEAFSETCECCKGRGVIIHTE 946 >UniRef50_C0WDS2 Ribonuclease n=1 Tax=Acidaminococcus sp. D21 RepID=C0WDS2_9FIRM Length = 468 Score = 514 bits (1323), Expect = e-144, Method: Composition-based stats. Identities = 154/491 (31%), Positives = 256/491 (52%), Gaps = 28/491 (5%) Query: 5 LINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAER 64 + + + EE R+ LV +L D +E G NIY+G+++ + P ++AAF+D + Sbjct: 4 IFVSVKPEETRMGLVFDSKLRDFAVERRGEGNLVGNIYRGRVSNVVPGIQAAFIDLNVGK 63 Query: 65 HGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAG 124 +GFL L + +D L EGQ ++VQ+ K+ RG KG +T ++L G Sbjct: 64 NGFLTLHK------------------QDRLTEGQMLLVQVVKDCRGTKGPGVTRNVTLPG 105 Query: 125 SYLVLMPNNPRAGGISRRIE-GDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWD 183 Y+VL P R +SR+I RT L+ + LPEGMG+++RTA +AE ++ D Sbjct: 106 RYIVLEPFGNRI-SLSRKITCKSLRTRLRTLVQK-SLPEGMGVVIRTAAAKAAAEEIEND 163 Query: 184 LSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQH 243 L L W+ + + ++ P L+++E ++ +R RDY+ +D+ +I++D+ + Sbjct: 164 LRQLLASWQVLLRRSKVGRGPQLLYRELDLSIRMIRDYVTKDVQKIIVDDEATYHTVEEL 223 Query: 244 IAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAID 303 + +G + + + Y + LF+HY + +I S R V LP GGS+V D TEA+T ID Sbjct: 224 LQDMGLTEI--RTEWYQEKEDLFTHYGLNEEIASISDRVVPLPGGGSLVFDYTEAMTVID 281 Query: 304 INSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL 363 +NS + G D EET+ TN EAA EIARQLRLRD+GG+IV DFIDM Q + + L Sbjct: 282 VNSGHYSTGSDREETSLATNREAALEIARQLRLRDIGGIIVADFIDMERKEEQEEILDLL 341 Query: 364 REAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSI 423 R DR + ++ ++ L+EM+R + +L + + CP C G+G V E++ + I Sbjct: 342 RREFAMDRMKPRVMGMTALNLVEMTRMKARRNLFGTVYTTCPMCQGSGRVESPETVYVEI 401 Query: 424 LRLIEEEALKENTQE-VHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETP 482 R + L + V + ++ + + +E G + +V N + Sbjct: 402 RRRLRSLYLDHAMARSLVLSVHPLVEEWI---RIHGMKDMEQEF-GAKIRLVSNPSLAVG 457 Query: 483 HYHVLRVRKGE 493 + +L G+ Sbjct: 458 VFTLLNAPDGD 468 >UniRef50_A3VT88 Ribonuclease E n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VT88_9PROT Length = 1038 Score = 513 bits (1322), Expect = e-143, Method: Composition-based stats. Identities = 214/671 (31%), Positives = 333/671 (49%), Gaps = 21/671 (3%) Query: 76 EYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPR 135 E I++V++ Q ++VQ+ KEERGNKGAALTTF+SLAG Y VLMPNN R Sbjct: 372 EARRERDRLLRNYRIQEVIKRRQVMLVQVVKEERGNKGAALTTFLSLAGRYGVLMPNNAR 431 Query: 136 AGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAI 194 GG+SR+I DR L++A+A L +P G GLI+RTAG ++ ++ D + + W+ I Sbjct: 432 GGGVSRKISNQSDRRRLRKAMAELNVPAGQGLIIRTAGAKRTKAEIKRDYDYLARLWDTI 491 Query: 195 KKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSS 254 + AP LI++E+++I RA RD +D EIL++ A+ + L P + Sbjct: 492 RSQTLQSVAPCLIYEEASLIKRAIRDLYDKDTAEILVEGEDGYREAKDFMKML-MPSHAK 550 Query: 255 KIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGD 314 ++ Y + PLF HY +E Q++ +Q V L SGG +VI TEAL +ID+NS ++T+ + Sbjct: 551 NVQPYREQEPLFLHYGVERQLDEMYQPVVTLKSGGYLVIQQTEALISIDVNSGKSTKERN 610 Query: 315 IEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARI 374 +E TA TN EAA E+ARQ RLRDL GLIV+DFIDM R+ R VE + +EA++ DRARI Sbjct: 611 VEATALKTNSEAAVEVARQCRLRDLAGLIVVDFIDMDENRNNRTVEKKFKEALKSDRARI 670 Query: 375 QISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKE 434 Q+ IS FGLLEMSRQR + + + CP C G G VR E +L ILR IEE+A + Sbjct: 671 QVGSISTFGLLEMSRQRRRSGIVDGTTRTCPTCDGAGAVRSVEMAALRILRAIEEKAASD 730 Query: 435 NTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEE 494 V A + ++ Y+LN+KR +N IE G R + + Y + + +E Sbjct: 731 KAASVTASAALDVSLYILNQKRDWLNQIEATY-GCRITVEGDSDKNGDQYELTVSGRLKE 789 Query: 495 TPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPA 554 TL +A +L +E + + A A+ + + + A Sbjct: 790 EETLRQGSSAAAVDASSLLENDEQQDDGDTPKEAAASDSDDPEQKSQKADDETAEGGDGK 849 Query: 555 PKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQN 614 PK ++ G E++ QP + + +P Sbjct: 850 PKKRRRRRRKRNADSAETK----------GETESRAPSQPTENETKDEQIEAGAAEPNAG 899 Query: 615 NRRDRNERRDTRSERTEGSDNREE--NRRNRRQAQQQTAETRESRQQAEVTEKARTADEQ 672 + +D++ ++ E+ + + ++ A + R+ Q A T+ + E+ Sbjct: 900 SVKDQSPQQGAAEEQAGTQVDGQTAAKDKDSEAAPKPARRRRKPAQPAAETDSGPSDTEK 959 Query: 673 QAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYE 732 +P +++ R A QEA + + ++ +P +P R ++ + E Sbjct: 960 DSPSPQQAAPRAKATETADQEAGQSSPPKTDAPA----DKAQPSEPPRAAETIHAPL--E 1013 Query: 733 QSVAEEAVVAP 743 S E AP Sbjct: 1014 DSAQGEDKPAP 1024 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 35/77 (45%), Positives = 52/77 (67%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+M+I+A EE RVA++ ++ D D ES + + NIY ++TR+EPSL+AAF++YG Sbjct: 3 KKMMIDARHPEETRVAVLSNGKVEDFDFESLSRKPLRGNIYLARVTRVEPSLQAAFIEYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFGEIHSDYY 79 >UniRef50_C8XF15 Ribonuclease, Rne/Rng family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XF15_NAKMY Length = 1080 Score = 513 bits (1321), Expect = e-143, Method: Composition-based stats. Identities = 152/427 (35%), Positives = 242/427 (56%), Gaps = 13/427 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R++ + E +VAL++ L + + G + +++ GK+ + PS+EAAFVD Sbjct: 366 VDRVMAVRQRGELAQVALLEDGILVEHFVSQTGADSLIGSVFLGKVQNVLPSMEAAFVDI 425 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ + E+ + A I+ L G ++ Q+ K+ G+KGA LTT I Sbjct: 426 GRGRNAVIYAGEVNWDAAGLGGKAR---RIESALSSGDTILAQVSKDPVGHKGARLTTQI 482 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G +LV +P A GISR++ +R LK L + +PE G+I+RTA G S E L Sbjct: 483 SLPGRFLVYVPGG-GATGISRKLPDTERKRLKAILDRI-VPEDAGVIIRTAAEGVSEEEL 540 Query: 181 QWDLSFRLKHWEAIKKAAESR-PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPK---- 235 D+ WE I + A+++ AP L++ E +++ RD DI +++D Sbjct: 541 ARDVERLKAQWEEISRRAQAKGSAPTLLYAEPGTLIKVVRDLFNSDINRLVVDGDAGNDT 600 Query: 236 VLELARQHIAALGRPDFSSKIKLYT-GEIPLFSHYQIESQIESAFQREVRLPSGGSIVID 294 V ++ A+ P+ + ++ + +F++Y+I+ QI A +R+V LPSGGS+VID Sbjct: 601 VWGPVSDYVNAVA-PELADRLVRWDHDGQDVFANYRIDEQIAKALERKVHLPSGGSLVID 659 Query: 295 STEALTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPV 353 TEA+T +D+N+ + T GG++EET NLEAA+EI RQLRLRD+GG+IV+DFIDM Sbjct: 660 RTEAMTVVDVNTGKYTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLE 719 Query: 354 RHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 ++ V RL EA+ +DR R Q++ ++ GL++M+R+R+ L E+ CP C G G V Sbjct: 720 SNRELVMRRLTEALGRDRTRHQVAEVTSLGLVQMTRKRMGTGLVEAFSEPCPHCGGRGIV 779 Query: 414 RDNESLS 420 L+ Sbjct: 780 LHEMPLA 786 >UniRef50_B5ZDP7 Ribonuclease, Rne/Rng family n=12 Tax=Alphaproteobacteria RepID=B5ZDP7_GLUDA Length = 1009 Score = 512 bits (1319), Expect = e-143, Method: Composition-based stats. Identities = 257/747 (34%), Positives = 351/747 (46%), Gaps = 37/747 (4%) Query: 86 GRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145 I++V+R Q ++VQ+ KEERGNKGAALTT+ISLAG Y VLMPN+ R GG+SR+I Sbjct: 161 RNYKIQEVIRRRQILLVQVVKEERGNKGAALTTYISLAGRYCVLMPNSLRGGGVSRKITS 220 Query: 146 -DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAP 204 DR LK+ +A L++P GM +IVRTAG + + D + L+ W+ I+ AP Sbjct: 221 VADRRRLKDVIAELQIPRGMAMIVRTAGAQRPRPEIMRDCEYLLRLWDDIRDHTMHSVAP 280 Query: 205 FLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYT-GEI 263 LI++E+++I RA RD +D+GEIL+D + AR+ + L P + K+K + G Sbjct: 281 ALIYEEASLIKRAIRDIYTRDVGEILVDGEAGWKSAREFMRML-MPQSAPKVKCWRDGGQ 339 Query: 264 PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTN 323 PLFSH+ +E ++S V+L SGG +VI+ EAL AID+NS RATR +IEETA TN Sbjct: 340 PLFSHFNVEGLLDSMLSPTVQLRSGGYLVINQAEALVAIDVNSGRATRERNIEETALRTN 399 Query: 324 LEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFG 383 LEAA+E+ARQLRLRDL GLIVIDFIDM +H VE RL++A+R DRARIQ+ IS FG Sbjct: 400 LEAAEEVARQLRLRDLAGLIVIDFIDMESRKHNGMVERRLKDALRTDRARIQVGAISHFG 459 Query: 384 LLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIV 443 LLEMSRQRL PS+ ES+ CP C GTG +R ES +L +LR +EEE + E+ V Sbjct: 460 LLEMSRQRLRPSIAESTFTPCPHCQGTGIIRGTESAALHVLRAVEEEGARRRAAEITVHV 519 Query: 444 PVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEE--TPTLSYM 501 IA Y+LN KR+ ++ IE R + V P+ + P + RVR E P + Sbjct: 520 AAEIALYILNNKRAWLSEIEKRH-KMHVVFSPDASLLPPQLRIERVRPQTERFEPVAPPV 578 Query: 502 LPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPA------- 554 L + + R+ P Q A AP E Sbjct: 579 LAEPTDILAEETEAAAPVVREIPIQAEAPADAAVAAEAAPVSTEEGEEGTDHRRRRRRRR 638 Query: 555 -----PKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRR 609 +A A A PA+ + G EET PT E P R++ R Sbjct: 639 RRRGGERAEGAPQAVPAEAADAEQADEDAGHGNEGEEETVPTIHAESVPEPAPAREEGGR 698 Query: 610 KPRQNNRRDRNERRDTRSERTEGSDNREENRRN-------------RRQAQQQTAETRES 656 + R ++ R + + R N + + A R Sbjct: 699 DRNRRRRDRQDRRPAQPAAPPAQAPYRGPTPANPFGDGILDIFDVIEQSTEAPQAPVRRP 758 Query: 657 RQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPV 716 A + A+ E + + + E E E E P Sbjct: 759 EPNAMPADIVDVAETLAVSEPEAVPAIVEAEIVIEAAPVEAAPVEAEPVEVEAETVETPA 818 Query: 717 QPRRKQRQLNQKV------RYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPL 770 +PRR+ R V S E A VA EE + P Sbjct: 819 KPRRRTRARKSAVAEAMTAEAPDSTTEPAPVAAEAEEPAKPKRRRAATPRKTAAKAAAEE 878 Query: 771 PVVAQTAPEQQEENNADNRDNGGMPRR 797 P VA +AP E P++ Sbjct: 879 PTVADSAPPATAEAVPAEDAAEAAPKK 905 Score = 106 bits (264), Expect = 6e-21, Method: Composition-based stats. Identities = 42/77 (54%), Positives = 54/77 (70%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 KRMLI+ T EE RV ++DG RL D D+E+ +Q K NIY K+ R+EPSL+AAFV+YG Sbjct: 3 KRMLIDTTHAEETRVVVMDGNRLEDYDVEASAKKQLKGNIYLAKVIRVEPSLQAAFVEYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFSEIHPDYY 79 >UniRef50_D1BNE2 Ribonuclease, Rne/Rng family n=3 Tax=Veillonella RepID=D1BNE2_VEIPT Length = 475 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 151/492 (30%), Positives = 249/492 (50%), Gaps = 22/492 (4%) Query: 1 MKRMLINATQQEELRVALV-DGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 M ++L+N +EE+R+A++ + +L D +E ++YKG + + ++AAFVD Sbjct: 1 MHKILVN-VMREEIRMAVIDEEGQLVDFVLERTDDSHMANHMYKGTVKNVLNGMQAAFVD 59 Query: 60 YGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G ++ +L L++ + I L GQ+++VQ+ KEE KGA +T Sbjct: 60 IGGSQNAYLNLQQGKEQ------------KILPRLSVGQQILVQVVKEEMLGKGARVTAD 107 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 +SLAG ++VL+P + IS++I + + LA+ + EG G I+RTA SA+ Sbjct: 108 VSLAGRFMVLLPYSEGM-HISKKITDEALRSKLQELAAPYVQEGCGFIIRTAAAKASADE 166 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + D+ + + W+ + K + + ++ +++ R RDY +++ EI++D+ Sbjct: 167 IGRDMEYLWRTWQHVLKRFKVAKSGTDLYSDADFWFRLVRDYAHRNVEEIIVDSDMGESR 226 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + G K+ + P+F IE Q+E R++ LPSGGSI ID TEAL Sbjct: 227 LLDLLGH-GPTSQQIKVTRHRDSTPIFKANHIEPQLEDLISRDINLPSGGSIRIDHTEAL 285 Query: 300 TAIDINSARATRGGD-IEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 T D+NSA T + +E+ AF N EAA EI RQLRLRD+GG+IV+DFIDM HQ+ Sbjct: 286 TVFDVNSAHYTGKSNKLEDLAFTVNKEAAKEICRQLRLRDIGGIIVVDFIDMKDKEHQQE 345 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 + L + D+ + + IS GL+EM+R+R L CP+C GTG + + Sbjct: 346 LLKLLGVQAKLDKMKTVVCGISSLGLVEMTRKRARQGLQTLMFDTCPQCGGTGYMLSGRT 405 Query: 419 LSLSILRLIEEEALKENTQ-EVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 + + I+R I E + + V +A YL + G + IV N Sbjct: 406 VYMQIVRRIRELFKSGRIKTNLEIEVHPEVAQYLTKAVLEDLGE----SIGRKISIVVNP 461 Query: 478 QMETPHYHVLRV 489 Q+ Y ++ + Sbjct: 462 QISREGYSLMAI 473 >UniRef50_C7Q8B4 Ribonuclease, Rne/Rng family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q8B4_CATAD Length = 1334 Score = 511 bits (1315), Expect = e-143, Method: Composition-based stats. Identities = 148/420 (35%), Positives = 247/420 (58%), Gaps = 9/420 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 ++R+++ + ++ +++ L + + N+Y GK+ + PS+EAAFVD Sbjct: 681 VERVMVVRQSGDRTQIGVLEDGVLVEHYVNRAQSASYVGNVYLGKVQNVLPSMEAAFVDI 740 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ F A I+ VL+ GQ V+ Q+ K+ G+KGA LT+ I Sbjct: 741 GKGRNAVLYAGEVN---FEAAGITGQAKRIESVLKSGQAVLTQVTKDPIGHKGARLTSQI 797 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLV +P GISR++ ++R LK L ++ +PE G+IVRTA G + + L Sbjct: 798 SLPGRYLVYVPEGTMT-GISRKLPENERNRLKTILKAV-VPEHAGVIVRTAAEGATEDEL 855 Query: 181 QWDLSFRLKHWEAIKKAAESR--PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 + D+ WE I++ A++ AP L++ E ++ VR RD +D ++++ + + Sbjct: 856 RRDVERLSAQWEEIQRKAKTSAGSAPTLLYGEPDLTVRVVRDIFNEDFSKLVVSGDQAWD 915 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 R+++ + PD + +++ +T E +F+ ++++ Q+ A R+V LPSGGS+VID TEA Sbjct: 916 TIREYVGGVA-PDLAPRLERWTSEQDIFAVHRVDEQLAKALDRKVWLPSGGSLVIDRTEA 974 Query: 299 LTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 + ID+N+ + T GG++EET N+EAA+EI RQLRLRDLGG+IVIDFIDM ++ Sbjct: 975 MVVIDVNTGKFTGSGGNLEETVTRNNIEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRD 1034 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V RL E + +DR + Q++ ++ GL++M+R+R+ L E+ C +C+G G + E Sbjct: 1035 LVMRRLLECLGRDRTKHQVAEVTSLGLIQMTRKRVGQGLLEAFSETCDKCNGRGVLVHME 1094 >UniRef50_A4AGL0 Ribonuclease G n=3 Tax=Actinobacteria (class) RepID=A4AGL0_9ACTN Length = 944 Score = 510 bits (1314), Expect = e-142, Method: Composition-based stats. Identities = 143/420 (34%), Positives = 242/420 (57%), Gaps = 6/420 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R+++ ++ + +++A+++ L + + N+Y G++ + PS+EAAFVD Sbjct: 285 VDRVMVVRSKFDRIQIAVLEDGVLVEHYVAKAQDASLIGNVYLGRVQNVLPSMEAAFVDI 344 Query: 61 GAERHGFLPLKEIAREYFPAN--YSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 G R+ L E+ + N I+ L+ G V+VQ+ K+ G+KGA LT+ Sbjct: 345 GRGRNAVLYSGEVDWDAAAENSADGKPQARRIELALKPGDRVLVQVTKDPVGHKGARLTS 404 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAE 178 +SL G YLV +PN GISR++ +R+ LK+ L + LPE +G+IVRTA G + E Sbjct: 405 QVSLPGRYLVYVPNGSM-SGISRKLPDTERSRLKKILKGV-LPENVGVIVRTAAEGATEE 462 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 L D+S W I + AP L+H E +++++ RD +D +++I+ + Sbjct: 463 QLTLDVSRLTNQWADISAQVDKVQAPALLHSEPDLLIKIIRDVFNEDFHKLVIEGDDARK 522 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 ++ ++ PD +++ + + F +++ QIE A R+V LPSGGS+VID TEA Sbjct: 523 TIENYVRSVA-PDLLDRLQPHESTVDSFEEFRVSEQIEKALDRKVWLPSGGSLVIDRTEA 581 Query: 299 LTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 +T +D+N+ + GG++EET N+EAA+EI RQLRLRD+GG+IV+DFIDM ++ Sbjct: 582 MTVVDVNTGKFVGSGGNLEETVTKNNVEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRD 641 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V RL E + +DR + Q++ ++ GL++M+R++L L E+ C C+G G V ++ Sbjct: 642 LVLRRLVECLSRDRTKHQVAEVTSLGLVQMTRKKLGLGLLETFSENCEVCAGRGVVVHHD 701 >UniRef50_A8M0Z2 Ribonuclease, Rne/Rng family n=2 Tax=Salinispora RepID=A8M0Z2_SALAI Length = 1058 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 147/418 (35%), Positives = 245/418 (58%), Gaps = 7/418 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R++ + + ++A+++ L + + N+Y GK+ + PS+EAAFVD Sbjct: 508 VDRVMAVRQRGDRTQIAVLEDGVLVEHYVTRNSSTTMAGNVYLGKVQNVLPSMEAAFVDI 567 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + A +I+ L+ G V+VQ+ K+ G+KGA LT+ + Sbjct: 568 GRGRNAVLYAGEVNWDATGLEGRAR---SIEQALKSGDSVLVQVTKDPIGHKGARLTSHV 624 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +L+G +LV +P GISR++ ++R L++AL L +PEG G+IVRTA G S + L Sbjct: 625 ALSGRHLVYVPGGN-TSGISRKLPDNERRRLRDALKKL-VPEGAGVIVRTAAEGASEDEL 682 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 D+ WE I+ A AP L+++E ++++R RD +D E++I+ ++ Sbjct: 683 ARDVKRLQAQWEDIQAKAGKGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGEGAYDMV 742 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 +++ + PD ++++ + G + +F+ Y+I+ QI R+V LPSGG +VID TEA+T Sbjct: 743 ESYLSHVS-PDLVARLRRHVGTVDVFTEYRIDEQILKGLDRKVFLPSGGHLVIDRTEAMT 801 Query: 301 AIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +D+N+ + T GG++EET NLEAA+EI RQLRLRD+GG++VIDFIDM ++ V Sbjct: 802 VVDVNTGKYTGAGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELV 861 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 RL E + +DR + Q++ I+ GL++M+R+R+ L E+ C C G G + E Sbjct: 862 LRRLTECLGRDRTKHQVTEITSLGLVQMTRKRIGAGLLEAFSETCDCCKGRGLIVHTE 919 >UniRef50_D1AAW2 Ribonuclease, Rne/Rng family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AAW2_THECD Length = 1041 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 148/413 (35%), Positives = 246/413 (59%), Gaps = 7/413 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 ++R+++ + E ++A+++ L + ++ H+ N+Y GK+ + PS+EAAFVD Sbjct: 507 VERVMVICQRGERTQIAVLEDGVLVEHYVDRASHQSYVGNVYLGKVQNVLPSMEAAFVDI 566 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + I+ L+ GQ V+VQ+ K+ G+KGA LT+ I Sbjct: 567 GKGRNAVLYAGEVNWDVAGL---VGQPRRIEQALKSGQSVLVQVTKDPVGHKGARLTSQI 623 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLV +P+ GISR++ +R+ LK+ L + +P+ G+IVRTA G + E L Sbjct: 624 SLPGRYLVYVPDGSMT-GISRKLPDKERSRLKQVLKKI-MPDNAGVIVRTAAEGATEEEL 681 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 D++ WE I K A++ AP L+H E ++ +R RD +D ++++ ++ Sbjct: 682 AGDIARLSAQWEHIHKQAKTASAPALLHGEPDLTIRVVRDIFNEDFSKLVVSGDTAWDMV 741 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 +++ + P + +++ + + + S Y+I+ QI A +R+V LPSGGS+VID TEA+T Sbjct: 742 SEYVGYVA-PHLAERLERWESDQDVLSAYRIDEQIAKALERKVWLPSGGSLVIDRTEAMT 800 Query: 301 AIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +D+N+ + T GG++EET NLEAA+EI RQLRLRD+GG+IVIDFIDM ++ V Sbjct: 801 VVDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELV 860 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGT 412 RL E + +DR + Q++ ++ GL++M+R+R+ L E+ C C+G G Sbjct: 861 LRRLLECLSRDRTKHQVAEVTSLGLVQMTRKRVGQGLLEAFSEPCECCNGRGI 913 >UniRef50_C0XRI1 Ribonuclease E (Fragment) n=2 Tax=Corynebacterium RepID=C0XRI1_9CORY Length = 743 Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats. Identities = 151/420 (35%), Positives = 240/420 (57%), Gaps = 16/420 (3%) Query: 8 ATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGF 67 + +V +++ L + + S + NIY G++ + PS+EAAF+D G R+G Sbjct: 246 SGHGTITQVGVLEDGVLAEHFVTSDQNASMIGNIYLGRVQNVLPSMEAAFIDIGQNRNGV 305 Query: 68 LPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYL 127 L E+ + + I+ L+ G +V+VQ+ K+ G+KGA LTT ISLAG YL Sbjct: 306 LYAGEVDWKAAGLGGRSR---RIEQALKSGDQVMVQVTKDPVGHKGARLTTQISLAGRYL 362 Query: 128 VLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFR 187 V +P R+ GISR++ +R LKE LA + +P G I+RTA G S EA+ D++ Sbjct: 363 VYVPGG-RSAGISRKLPAPERKRLKEILAKV-VPGKGGAIIRTAAEGVSEEAIAADVTRL 420 Query: 188 LKHWEAIKKAAESRP-----APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQ 242 WE +++ AE P +++E N++V+ RD +D ++++D + Sbjct: 421 HNQWETLQEQAEREKSSKGAKPVTLYEEPNLLVKVVRDLFNEDFSKLIVDGKRPWNTVHA 480 Query: 243 HIAALGRPDFSSKIKLYT----GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 +++++ PD ++ Y F Y+++ QI+ A R V LPSGG++VID TEA Sbjct: 481 YVSSVA-PDLEDRLVRYDRAAHDGQDAFEAYRVDEQIQKALSRTVWLPSGGTLVIDRTEA 539 Query: 299 LTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 +T ID+N+ + T GG +EET NLEAA+EI RQ+RLRD+GG+I++DFIDM +Q Sbjct: 540 MTVIDVNTGKFTGSGGSLEETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMILPENQE 599 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V RL+EA+ +DR R Q+S ++ GL++M+R+RL L E+ C C G G + ++ Sbjct: 600 LVLRRLKEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLLETFSTPCECCGGRGIIVADD 659 >UniRef50_C6D805 Ribonuclease, Rne/Rng family n=3 Tax=Bacillales RepID=C6D805_PAESJ Length = 411 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 144/413 (34%), Positives = 235/413 (56%), Gaps = 9/413 (2%) Query: 10 QQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLP 69 E L+ A++ RL D +E N+YKG++ + P ++AAFVD G ++ FL Sbjct: 4 HGELLQTAVLMDGRLIDFFMEQSESSGLVGNVYKGRVVNVLPGMQAAFVDIGLGKNAFLY 63 Query: 70 LKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129 + ++ + +P+I ++++ GQE++VQ+ KE G+KGA +TT +L G +LV Sbjct: 64 IDDLLHPHL--EKQPEHKPSITELVKPGQELVVQVMKEPMGSKGARVTTHFTLPGRWLVY 121 Query: 130 MPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRL 188 MP G+S++I + +R+ ++ L E G+I+RTA G+ E+L D+ Sbjct: 122 MPIAGYI-GVSKKIMAESERSRIRMIGERLRQGE-EGIIMRTAAEGECEESLGADVDQLR 179 Query: 189 KHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALG 248 + W ++ + A+ AP +H+E+ ++ RA RD L D+ E+ +D+P A + + Sbjct: 180 QLWTSVLQRADHAKAPAELHREAGLLRRAVRDTLTDDMDEVWLDDPSRYSEAVSLLKEMT 239 Query: 249 RPDFSSKIKLYT---GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDIN 305 P + ++KL+ ++ LF + + QIE+AF +RL SGGS+V D TEALT ID+N Sbjct: 240 -PHLAGRLKLFEARKEKVSLFDRFGVTDQIEAAFSSRIRLESGGSLVWDETEALTVIDVN 298 Query: 306 SARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLRE 365 +A+ +E+T F TN+EAADEIAR LR+RD+GG+IVIDFIDM ++ V RL + Sbjct: 299 TAKYIGATGLEDTVFKTNMEAADEIARLLRIRDVGGIIVIDFIDMENESNREKVMARLSD 358 Query: 366 AVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 ++DR + + +R GLLE++R++ + CP C GTG S Sbjct: 359 WAKKDRTKCTVFGWTRLGLLELTRRKARDNAARQLTERCPACGGTGKKSSIHS 411 >UniRef50_A6LDG7 Ribonuclease G n=21 Tax=Bacteria RepID=A6LDG7_PARD8 Length = 525 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 162/523 (30%), Positives = 267/523 (51%), Gaps = 40/523 (7%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M L+ Q +E+ +A+++ + L +L E+ +IY GK+ ++ P L AAF+D Sbjct: 1 MISELVVDVQPKEVSIAVLEDKSLVELQKEARNVSFAVGDIYLGKVKKLMPGLNAAFIDV 60 Query: 61 GAERHGFLPLKEIAREYFPANY----------------------SAHGRPNIKDVLREGQ 98 G ++ FL ++ + +I DVL+ GQ Sbjct: 61 GYKKDAFLHYLDLGPNFNTQQKYLKQLLSDPKKAPVLSKTQILPEIEKNGSISDVLKVGQ 120 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALAS 157 EV+VQI KE KG LT+ +S AG Y+VL+P + +S +I ++R L++ + S Sbjct: 121 EVLVQIAKEPISTKGPRLTSELSFAGRYIVLIPFADKV-SVSTKIKSSEERARLRQLIQS 179 Query: 158 LELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRA 217 ++ P+ +IVRT+ GK L +L +K WE AP +I++E+ V Sbjct: 180 IK-PKNFSVIVRTSSEGKRVAELDHELKTLMKRWEDNIVKVPKLKAPAIIYEETARTVAL 238 Query: 218 FRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIES 277 RD I +++ +V R +++ + P ++LYTGE+P+F ++ + QI+S Sbjct: 239 LRDIFNPSFQNIYVNDKEVYNNVRDYVSLIA-PGREEIVQLYTGELPIFDNFAVTKQIKS 297 Query: 278 AFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGD-IEETAFNTNLEAADEIARQLRL 336 F R V SG ++I+ TEA+ ID+NS ++G D E+TA + N+ AADEIARQLRL Sbjct: 298 LFGRTVTYKSGAYLIIEHTEAMHVIDVNSGNRSKGSDAQEKTAIDVNIAAADEIARQLRL 357 Query: 337 RDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSL 396 RD+GG+IVIDFIDM +++ + + +A+ DRA+ I +S+FGL++++RQR+ P++ Sbjct: 358 RDMGGIIVIDFIDMAEAANRQKLFEHMTKAMANDRAKHNILPLSKFGLMQITRQRVRPAM 417 Query: 397 GESSHHVCPRCSGTGTVR----DNESLSLSILRLIEEEALKENTQEVHAIVPVPI--ASY 450 + CP C GTGTV+ +SL I L+ + +K+ T VH V + + Sbjct: 418 DVDTSEDCPSCFGTGTVKPSILFTDSLEEKIDCLVNKHHVKKFTLHVHPYVAAYVNKGLF 477 Query: 451 LLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGE 493 L+ K + ++PN + Y K E Sbjct: 478 PLSMKWKM-------KYTHGLKVIPNQSLAFLEYKFFDADKNE 513 >UniRef50_Q0FAK9 Ribonuclease, Rne/Rng family protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FAK9_9RHOB Length = 870 Score = 508 bits (1309), Expect = e-142, Method: Composition-based stats. Identities = 222/667 (33%), Positives = 347/667 (52%), Gaps = 31/667 (4%) Query: 70 LKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129 + E R I++V++ Q +++Q+ KEERGNKGAALTT++SLAG Y VL Sbjct: 214 ADDDVEEEVRPRKPRPRRYKIQEVIKVRQILLIQVVKEERGNKGAALTTYLSLAGRYCVL 273 Query: 130 MPNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRL 188 MPN R GGISR+I DR ++KE + L++P+G GLIVRTAG ++ + + D + + Sbjct: 274 MPNTARGGGISRKITNVQDRKKIKEITSELDVPKGAGLIVRTAGAKRNRDDILRDYEYLM 333 Query: 189 KHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALG 248 + W I+ AP I+ E ++I R+ RD DI EI+++ + E A+ ++ L Sbjct: 334 RQWTQIRDITLESIAPTQIYAEGDIIKRSIRDLYNNDIDEIIVEGERGFEAAKAYMTML- 392 Query: 249 RPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSAR 308 P ++K Y ++PL++ YQ+E+ + F V+L SGG IVI TEAL A+D+NS + Sbjct: 393 MPSHVKRVKQYKNKMPLYARYQVENYLGGMFNPTVQLKSGGYIVIGVTEALVAVDVNSGK 452 Query: 309 ATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVR 368 AT+ IE+TA TNLEAADE+ARQLRLRDL GLIVIDFIDM R+ AVE R+++ ++ Sbjct: 453 ATKESSIEKTALKTNLEAADEVARQLRLRDLAGLIVIDFIDMEERRNNIAVEKRMKDKLK 512 Query: 369 QDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIE 428 DRARIQ+ IS FGL+EMSRQRL P + E++ CP C GTG VR ++S +LSILR IE Sbjct: 513 SDRARIQVGRISGFGLMEMSRQRLRPGMLEATTKECPHCLGTGLVRSDDSQALSILREIE 572 Query: 429 EEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLR 488 EEA+++ T+E+ A VPV I++YLLN KR + IE++ + +I + M Y + + Sbjct: 573 EEAIRKRTKEIQATVPVGISNYLLNHKRENIALIESQY-AISIIIEASASMIGTDYELEK 631 Query: 489 VRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAA 548 + + +P E A + + L P +P Sbjct: 632 RKTSSRIIADVFDMPTAREMEAAANIDVTKSTEDAETSTNLDDDDKPKKRRRRRRRKPRK 691 Query: 549 PVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDR 608 +AP P + + +PA + KP+ + + Sbjct: 692 DEIAPDTSNEAEDVNQGDAPS--------------SDKSNIVSLEPAKEQPLKPKAVKSK 737 Query: 609 RKPRQNN--------RRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 RKP+ + ++ + + E +E ++ RR + Q + AE ++++ Sbjct: 738 RKPKIKDITEIEINISEKPSDAKQSVVEISEEVKPKKRKRRTKAQIEADEAEAKKNKDLE 797 Query: 661 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERV------R 714 + + A + R ++K ++ + K VE + E++ Sbjct: 798 KPKKSQPKAKKSAGKLSSSGTRAEENKTKSLSKTKKSTVEAPEDVKIIPEDKSIGIEDEV 857 Query: 715 PVQPRRK 721 P +P+R+ Sbjct: 858 PSKPKRR 864 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 53/77 (68%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLI+AT EE RV +V+G ++ + D ES Q NIY K+TR+EPSL+AAFVDYG Sbjct: 3 KKMLIDATHAEETRVVVVEGNKVDEFDFESLNKRQLSGNIYLAKVTRVEPSLQAAFVDYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLSFAEIHPDYY 79 >UniRef50_C2KPN3 Ribonuclease G n=3 Tax=Actinomycetaceae RepID=C2KPN3_9ACTO Length = 817 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 151/418 (36%), Positives = 239/418 (57%), Gaps = 8/418 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 +KR ++ + +VAL++ L + + N+Y GK+ + S+EAAFVD Sbjct: 229 VKREMVVRGRDGLNQVALLEDGLLVEHYVSRHTQTTMVGNVYLGKVQNVLSSMEAAFVDI 288 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + N I++ L G V+VQ+ K+ G+KGA LT+ I Sbjct: 289 GKGRNAVLYAGEVNWDAAGLN---SKTGRIEEALSPGDMVLVQVTKDPIGHKGARLTSQI 345 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LAG +LVL+P+ GISR++ ++R LK L ++ +P G G+IVRTA G + E L Sbjct: 346 TLAGRHLVLVPSGAMT-GISRKLPEEERKRLKTVLKTM-IPAGFGVIVRTAAEGATEEQL 403 Query: 181 QWDLSFRLKHWEAI-KKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + D+ +K WE I KK A R +P L+H E + VR RD +DI + I + Sbjct: 404 RVDVERLVKIWEDIEKKRARPRNSPQLLHAEPELAVRVVRDIFNEDISSLTIQGEEAWHT 463 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 +++ L P+ ++ + + +F+ ++I+ Q+ F+R+V LPSGG ++ID TEA+ Sbjct: 464 ISKYVKELS-PELGERLHFWEDDSDVFAAHRIDEQLAKGFERKVWLPSGGYLIIDRTEAM 522 Query: 300 TAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 T ID+N+ R GG +EET NLEAA+EI RQLRLRD+GG++VIDF+DM ++ Sbjct: 523 TVIDVNTGRYIGAGGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVIESNRDL 582 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDN 416 V RL E + +DR R Q++ ++ GL++M+R+R+ L E+ C C G G + + Sbjct: 583 VLRRLVECLGRDRTRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTQCECCDGRGFIVHD 640 >UniRef50_B8EPB2 Ribonuclease, Rne/Rng family n=1 Tax=Methylocella silvestris BL2 RepID=B8EPB2_METSB Length = 1080 Score = 507 bits (1306), Expect = e-142, Method: Composition-based stats. Identities = 234/763 (30%), Positives = 345/763 (45%), Gaps = 33/763 (4%) Query: 71 KEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLM 130 + E + I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLM Sbjct: 327 GDAMEEVPVRPQRYRRQYKIQEVIKRRQVLLVQVVKEERGNKGAALTTYLSLAGRYSVLM 386 Query: 131 PNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLK 189 PN R GGISR+I DR LK LE+PEGMG+I+RTAG ++ ++ D + L+ Sbjct: 387 PNTARGGGISRKITDSTDRQRLKSIAQELEVPEGMGVILRTAGASRTKPEVKRDFEYLLR 446 Query: 190 HWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGR 249 WE +++ AP L+++E ++I RA RD +DI +I++ K AR + L Sbjct: 447 MWETVRETTLKSSAPTLVYEEGSLIKRAIRDLFNKDIDDIVVAGDKGYREARDFMRLL-M 505 Query: 250 PDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARA 309 P + ++ Y P+FS +E+Q+++ F +V L SGG IVI+ TEAL AID+NS R+ Sbjct: 506 PSHVNSVQPYRDAQPIFSKSDVETQLDAMFLNQVTLKSGGYIVINQTEALVAIDVNSGRS 565 Query: 310 TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQ 369 TR +IE+TA TNLEAADE+ARQLRLRDL GLIV+DFIDM R+ RAVE RL++A++ Sbjct: 566 TREHNIEDTALRTNLEAADEVARQLRLRDLAGLIVVDFIDMEEGRNNRAVERRLKDALKN 625 Query: 370 DRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEE 429 DRARIQ+ IS FGLLEMSRQR+ + E S +CP CSG+G +R S++L +LR+ E+ Sbjct: 626 DRARIQVGRISHFGLLEMSRQRIRTGVLEGSTELCPHCSGSGILRSTASIALHVLRVAED 685 Query: 430 EALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYH-VLR 488 LK + ++ +A Y+LNEKR+ + +E R GV I +D + YH + R Sbjct: 686 ALLKSASHDLIIRTRSAVALYILNEKRAHLRDLERRF-GVAVSIEVDDSLIGSVYHAMER 744 Query: 489 VRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAM---PDVPP------ 539 + + A E+ A PE A A D P Sbjct: 745 GEPASGGHEPIELAAPEPAQIAARDFVEDAAPGFAPEDEAPEGAAEDGDEDQEPGDANAR 804 Query: 540 --------APTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPT 591 A + + A P G + + G P+ Sbjct: 805 GEGESEGDAENRRKRRRRRRRGRGGDREGSGIAANAPQPSDDALGVIAQ-YGGLPGAIPS 863 Query: 592 EQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTA 651 +A + Q +E + E + R R+A+ + A Sbjct: 864 VDVIAEAFENADYQPSEVNAETAPELAADESGEVVETSFEREAAPAKPARRPRRARSREA 923 Query: 652 ETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEE 711 E+ VT+ A T DD AQ ++ E Sbjct: 924 APEEAESAEPVTDLASTGAAPSG-----VEGEEDDAEAAQPARRSRRTPRPRAPRRAASE 978 Query: 712 RVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLP 771 P + +++ A A ++ +A P P + P Sbjct: 979 LPAPASE-----AEAATLDLQEAAAAPAPLSEPTLPFESAPPAATAVEPPAPSAFE-PAT 1032 Query: 772 VVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRR 814 ++T + G S R R +R + Sbjct: 1033 AASETEASTASSIVGSDEPAPGTESNPPESDRPKRSGWWQRAK 1075 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 39/77 (50%), Positives = 53/77 (68%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+A+ EE RV ++ G R+ + D ES +Q + NIY K+TR+EPSL+AAFVDYG Sbjct: 3 NKMLIDASHPEETRVVVLRGNRVEEFDFESASKKQLRGNIYLAKVTRVEPSLQAAFVDYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFSEIHPDYY 79 >UniRef50_B6YQX9 Ribonuclease G n=23 Tax=Bacteroidales RepID=B6YQX9_AZOPC Length = 518 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 148/523 (28%), Positives = 262/523 (50%), Gaps = 42/523 (8%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M L+ Q + + +A+++ + L + E NIY G++ ++ P L AAFVD Sbjct: 1 MISELVIDVQPQIISIAVLEDKNLVEFRKEVRDLSFSVGNIYLGRVKKMMPGLNAAFVDI 60 Query: 61 GAERHGFLPLKEIA------REYFPANYSAHGRP----------------NIKDVLREGQ 98 G E+ FL +++ + +S P +I D+L++G Sbjct: 61 GGEKGAFLHYRDLGGNINSLNTFLKKVFSEKRIPPIGKFLCSSAEVAKDISITDILKQGD 120 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALAS 157 V+VQI KE KG LT+ +S+ G L+++P R IS +I +R LK+ + S Sbjct: 121 NVLVQIVKEPIATKGPRLTSELSIVGRCLIVIPFGDRV-SISLKIQSDKERIRLKQLVCS 179 Query: 158 LELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRA 217 ++ P+ +IVRT+ GK A L +L +K W + +P LI++E+ ++ Sbjct: 180 IK-PKNFSVIVRTSAKGKQASELDKELKILVKRWNDNIVKLINSKSPSLIYEETGRVLAL 238 Query: 218 FRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIES 277 RD I I++ + R +++ + P S+ +KLY GE P+F ++ I Q++S Sbjct: 239 LRDNFDSSFEHIYINDENMFNEVRDYLSLID-PQKSNIVKLYKGEFPIFDNFVITKQLKS 297 Query: 278 AFQREVRLPSGGSIVIDSTEALTAIDINSARA---TRGGDIEETAFNTNLEAADEIARQL 334 F + + L +G +VI+ TEA+ ID+NS T + E+ + N+ AA+EIA+QL Sbjct: 298 KFGKIITLKNGAYLVIEHTEAMYVIDVNSGNRLALTANTNQEDVIVDVNMSAAEEIAKQL 357 Query: 335 RLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSP 394 RLRD+GG+IVIDFIDM +++ + + + + +DRA+ + +S+ GL+E++R+R+ P Sbjct: 358 RLRDMGGIIVIDFIDMYEQVNRQKLYDSMCNFMAKDRAKHHVFPLSKVGLMEITRKRIRP 417 Query: 395 SLGESSHHVCPRCSGTGTVR----DNESLSLSILRLIEEEALKENTQEVHAIVPVPI--A 448 +L ++ C G GT++ + L I ++++ +KE + +H V + Sbjct: 418 ALDFNAMETCSVPLGKGTIKPSIFFTDMLDEKIKIVVKKMGVKEFSLHIHPYVAAFVKKG 477 Query: 449 SYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRK 491 + LN K + V I+P+ +E Y +K Sbjct: 478 FFSLNMKWKI-------KYSVGIRIIPDQSLEILGYKFFNKKK 513 >UniRef50_Q0G6Z6 Ribonuclease E and G n=2 Tax=Rhizobiales RepID=Q0G6Z6_9RHIZ Length = 1013 Score = 507 bits (1305), Expect = e-141, Method: Composition-based stats. Identities = 206/742 (27%), Positives = 348/742 (46%), Gaps = 28/742 (3%) Query: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 + E I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMP Sbjct: 280 DALEEVPVRQARPRKNYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLMP 339 Query: 132 NNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 N R GGISR+I DR L++ + L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 340 NTARGGGISRKITNQADRKRLRDVVKELDVPRGMGIILRTAGANRTKAEVKRDYEYLMRL 399 Query: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 WE+++ AP L+++E ++I R+ RD +DI +IL+ A+ + L P Sbjct: 400 WESVRTLTLQSIAPSLVYEEGSLIKRSIRDLFNKDIDQILVSGEAGYREAKDFMRML-MP 458 Query: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 + ++ Y P+F+ IE+Q++ Q V L SGG I+I+ TEAL AID+NS R+T Sbjct: 459 SQAKAVQPYRDATPIFTRQGIEAQLDKMLQPHVTLKSGGYIIINQTEALVAIDVNSGRST 518 Query: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 R IE TA+ TNLEAA+EIARQLRLRDL GLIV+DFIDM R+ R VE ++++ ++ D Sbjct: 519 REMSIENTAYQTNLEAAEEIARQLRLRDLAGLIVVDFIDMDEKRNNRNVEKKMKDCLKND 578 Query: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 RARIQ+ IS FGL+EMSRQR+ S+ ES+ CP C G G VR SL+L +R IE+ Sbjct: 579 RARIQVGKISHFGLMEMSRQRIRASVLESTMRPCPVCEGAGMVRATSSLALHAIRHIEDY 638 Query: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 K +++ VP A ++LNEKR ++ +E D +R I + + + + Sbjct: 639 LQKNKGRDLIVKVPTETALFILNEKRHHIDELEQNHD-LRIFIEADPSVGHNDLSIEQGG 697 Query: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 T +++ P A+ +E+ E+ + + Sbjct: 698 VASRPITRNFVSPISVAAEDAVDEDEDADVEISEEETGTSEARDDSESSDDNNEGRSKGR 757 Query: 551 VAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRK 610 + + + G + S + E + R++ R+ Sbjct: 758 GRRRRRRRGGSDGDDNENGGNEQQASDSSNASSDDVDNSDDESQDSDGSSGRRRRRRGRR 817 Query: 611 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTAD 670 + +R +++ + + E + +D + ++ + Q R+S ++ E ++ + Sbjct: 818 GGRRHRDGNDKQAEGQIESDQDNDQQSDDADGAEEENSQGRRRRQSNWGSKSDEDTKSTE 877 Query: 671 EQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVR 730 + A+ + A + V + P + + Sbjct: 878 KSD----------------AEPDGSATEPSDTGVGAMPAIDPAAPSTADERFDDPVATLI 921 Query: 731 YEQSVAEEAVVAPVVEETVAAEPIVQ-EAPAPRTELVKVPLPVVAQTAPEQQEENNA--- 786 E + A A A E + + + E P + + ++ ++ E+ Sbjct: 922 GEAAEAGSAEKAATEESSESTPASDRDEDNTPSNDNERSTAGAADESGEKKDEKPKQAAL 981 Query: 787 -----DNRDNGGMPRRSRRSPR 803 + ++ G P++ PR Sbjct: 982 TEPVVTSGEDNGGPKQEETKPR 1003 Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 41/97 (42%), Positives = 59/97 (60%), Gaps = 1/97 (1%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+++ EE RV +V G R+ + D ES +Q K NIY K+TR+EPSL+AAF++YG Sbjct: 3 NKMLIDSSHPEETRVVVVRGNRVEEFDFESEHKKQLKGNIYLAKVTRVEPSLQAAFIEYG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQ 98 RHGFL EI +Y+ A + + + GQ Sbjct: 63 GGRHGFLAFSEIHPDYYQI-PKADREALLAEEMARGQ 98 >UniRef50_B2HMG4 Ribonuclease E Rne n=28 Tax=Mycobacterium RepID=B2HMG4_MYCMM Length = 1017 Score = 506 bits (1303), Expect = e-141, Method: Composition-based stats. Identities = 143/418 (34%), Positives = 237/418 (56%), Gaps = 20/418 (4%) Query: 14 LRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEI 73 ++A+++ + + + S NIY G + + PS+EAAFVD G R+G L E+ Sbjct: 362 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 421 Query: 74 AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 + I+ L+ G ++VQ+ K+ G+KGA LTT +SLAG YLV +P Sbjct: 422 NWDAAGL---GGADRKIEQALKPGDYIVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGA 478 Query: 134 PRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEA 193 GISR++ +R LKE L + +P G+I+RTA G + ++ D++ + W Sbjct: 479 SST-GISRKLPDTERQRLKEILREV-VPSDAGVIIRTASEGVKEDDIRADVTRLQERWNQ 536 Query: 194 IKKAA-----ESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALG 248 I+ A ++ A +++E +V+V+ RD +D +++ + ++++++ Sbjct: 537 IEAKAVEIKQKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLVVSGDDAWDTINEYVSSVA 596 Query: 249 RPDFSSKIKLYTGEI--------PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 PD SK+ Y + +F+ ++I+ Q+ A R+V LPSGG++VID TEA+T Sbjct: 597 -PDLVSKLSKYEPAVGSEGQVGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 655 Query: 301 AIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +D+N+ + T GG++E+T NLEAA+EI RQLRLRD+GG++VIDFIDM ++ V Sbjct: 656 VVDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 715 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 RL EA+ +DR R Q+S ++ GL++++R+RL L E+ CP CSG G + + Sbjct: 716 LRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPHCSGRGILLHAD 773 >UniRef50_D0LAJ7 Ribonuclease, Rne/Rng family n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LAJ7_GORB4 Length = 1123 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 147/436 (33%), Positives = 240/436 (55%), Gaps = 17/436 (3%) Query: 14 LRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEI 73 +VA+++ L + + + NIY G++ + P +EAAFVD G R+G L E+ Sbjct: 512 TQVAVLEDGVLVEHFVTTATSSSMVGNIYLGRVQNVLPGMEAAFVDIGRGRNGVLYAGEV 571 Query: 74 AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 + + G I+ L+ G V+VQ+ K+ G+KGA LTT ISLAG YLV +P Sbjct: 572 NWDAAGLD---GGSRKIEQALKPGDNVLVQVSKDPVGHKGARLTTQISLAGRYLVYVPGG 628 Query: 134 PRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEA 193 GISR++ +R LK+ LA L +P G+I+RTA G SAE L D++ W + Sbjct: 629 SST-GISRKLPDVERKRLKQILAKL-VPADAGVIIRTASEGVSAEELGADIARLEAKWRS 686 Query: 194 IKKAAESRPA------PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAAL 247 I ++ P +++E +++VR RD +D +++++ K L ++ ++ Sbjct: 687 IDESVTQAKKNSGSAGPKALYEEPDLLVRVVRDLFNEDFKKLVVEGAKAWNLVEGYVGSV 746 Query: 248 GRPDFSSKI----KLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAID 303 PD ++ K + F ++I+ Q+ A R+V LPSGG+++I+ TEA+T +D Sbjct: 747 A-PDLMDRVEKFEKPHADAPDSFVVHRIDEQLAKALDRKVWLPSGGTLIIEHTEAMTVVD 805 Query: 304 INSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENR 362 +N+ + T GG++EET NLEAA+EI RQ+RLRD+GG+I++DFIDM ++ V R Sbjct: 806 VNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMVLESNRDLVLRR 865 Query: 363 LREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLS 422 L EA+ +DR R Q+S ++ GL++M+R+RL L E+ C C G G + + + Sbjct: 866 LTEALARDRTRHQVSEVTSLGLVQMTRKRLGTGLLEAFSTTCTTCGGRGVIVHANPVEVR 925 Query: 423 ILRLIEEEALKENTQE 438 E + ++ Sbjct: 926 SEEAGRVEGGSKRSRR 941 Score = 43.2 bits (100), Expect = 0.053, Method: Composition-based stats. Identities = 52/361 (14%), Positives = 83/361 (22%), Gaps = 46/361 (12%) Query: 483 HYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPT 542 H V T + P E P A P P A A D P AP Sbjct: 73 HVEVDDASLAAVDATSTETPPTAPETPTTAPESAPTAPESAPTAPEDAPTAPEDAPTAPE 132 Query: 543 PAEPAAPVVAPAPKAAPATPAA-----PAQPGLLSRFFGALKALFSGGEETKPTEQ---P 594 A A AP P T P P L S +G Sbjct: 133 DAPTALEDAPTAPDPTPETAVTAADRGPETPSLFSAASAQYDHPIAGDVPALAAGPLFLQ 192 Query: 595 APKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETR 654 E ER +D + D E DN ++ A + + + Sbjct: 193 PQAPEPSAERTRDTSARAGSASSDIQGGDTKGGEEQNADDNGADDTDGHDDAGKDSGDDT 252 Query: 655 ES------------------RQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKA 696 ES Q A+ ++ + + R D ++ Sbjct: 253 ESNRNRRRRRGRRGRGRGRGEQGADDQGADDADEQAGGDQNRADQNRADQNGADTVDSGE 312 Query: 697 LNVEEQSVQETEQEERVRPVQPRRKQRQLNQK------------------VRYEQSVAEE 738 + E + +++ + + S AE+ Sbjct: 313 DTDVTSDGGSDPESEDEKDAGESGARKKAGRPSGKKGKRSKNKKVAEEDDAGTDDSDAED 372 Query: 739 AVVAPVVEETVAAEPIVQEAPAPRTELVKVPL--PVVAQTAPEQQEENNADNRDNGGMPR 796 + E++ A E R + +P+ R+ Sbjct: 373 TGESDDAEDSDAEADGNGEGSTRRRRRRRRRKGGADAEDASPDDPPNTVVHEREPRSKRV 432 Query: 797 R 797 R Sbjct: 433 R 433 >UniRef50_Q9K8J2 Ribonuclease G (Cytosolic axial filament protein) n=1 Tax=Bacillus halodurans RepID=Q9K8J2_BACHD Length = 500 Score = 505 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 164/505 (32%), Positives = 275/505 (54%), Gaps = 7/505 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK +L N +E R A+V+ ++ +L IE P E+ N+Y+G++ + P ++A FVD Sbjct: 1 MKSILFNMATRER-RAAVVENGQVIELMIERPVEERIVGNVYRGRVVNVLPGMQACFVDI 59 Query: 61 GAERHGFLPLKEIAREYFPANY-SAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G E++GFL E+ + + NI D ++EG+E++VQ+ KE G KG LT Sbjct: 60 GREKNGFLYRDELLSFHLSNEEEDEKKKRNISDFVQEGEELLVQVTKEGFGTKGPRLTGV 119 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ++ G Y+V MP G+S++I ++ E + L GLI+RTA + Sbjct: 120 VAFPGRYVVYMPQAGYV-GVSKKIFPEEERERWRSEWEQLLLNDEGLIIRTACKKEVRHE 178 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + ++ F + WE ++K + AP L++Q S +I R RD+ ++GEI++D+ + Sbjct: 179 AEQEILFFRQMWEELQKRGKGAKAPSLLYQSSGLIERILRDFPLDEVGEIVVDDREEYHF 238 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 +Q +A+ P+ S++ LY G+ +FSH ++E +IE +R+V L +GG +++D EAL Sbjct: 239 IKQLLASY--PNMESRVFLYKGKENVFSHLKVEKEIEKGLRRQVWLKNGGYLMMDHAEAL 296 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+NS + D+++T N+EAA EIA QLRLRD+ G+I+IDFIDM Q+ V Sbjct: 297 TVIDVNSGKFIGKQDLQDTVVKVNIEAAKEIAHQLRLRDISGIIIIDFIDMKREEDQQLV 356 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 + L +A++ DR + + ++ GL+EM+R+++ SL S CP C GTG V +E+ Sbjct: 357 LHTLEQALKTDRTKTNVIGMTGLGLVEMTRKKVRQSLQASLSKPCPTCRGTGQVLSDEAQ 416 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 + I R + E + + + +P IA L + + +ET G R + VP + Sbjct: 417 AFKIERELWEYRGSD-AEAIVLELPSHIAPVLFGQDGGHLKRLETAI-GSRILAVPKKTL 474 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPK 504 + Y + + EE + K Sbjct: 475 KEEQYEIRYIGSLEEATQFVERIKK 499 >UniRef50_B0TWF6 Ribonuclease G n=17 Tax=Francisella RepID=B0TWF6_FRAP2 Length = 509 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 160/494 (32%), Positives = 256/494 (51%), Gaps = 15/494 (3%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 + +N + E+ R+A+ + L ++ IE ++ NIYKGKI R+ P ++AAFVD G Sbjct: 17 EIFLNINKYEQ-RIAIKENNILKEILIERDNQKRIVGNIYKGKIIRVLPGMQAAFVDIGL 75 Query: 63 ERHGFLPLKEIAREYFPANYSAHGRP-------NIKDVLREGQEVIVQIDKEERGNKGAA 115 E+ GFL L E+ S +I LREGQEV+VQ+ KE GNKG Sbjct: 76 EKAGFLHLSEVIPLERDDEESDENFKLNKLNTEDINKWLREGQEVLVQVVKESIGNKGVK 135 Query: 116 LTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRT-ELKEALASLELPEG-MGLIVRTAGV 173 LT+ +S++ +LV +P+ GIS +I ++ L +++ + E G I+RTA Sbjct: 136 LTSHLSVSSRFLVFLPDLDHI-GISLKISKEEEKQRLLDSIKKITQSENPRGYILRTAAE 194 Query: 174 GKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDN 233 G S E L+ D+ F W+ I + + P +++++ ++I++ + + +I +D+ Sbjct: 195 GASYEELENDIKFLNNLWQDILDISSTIIKPGVVYEDFSLIIKTINIFANDNPDKIHVDD 254 Query: 234 PKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVI 293 + Q A P KI+LY + +F Y I+ +I A + V L SGG +VI Sbjct: 255 IDSYKEICQF-ADKYIPGLRDKIELYQ-KHNIFEEYDIDVEINKALDKTVYLKSGGYLVI 312 Query: 294 DSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPV 353 + TEA+ IDIN+ ++EET F TNLEA EIARQLRLR+LGG+I+IDFIDM Sbjct: 313 EQTEAMITIDINTGGFIGTKNLEETIFKTNLEATKEIARQLRLRNLGGIIIIDFIDMMDE 372 Query: 354 RHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 H+ V L++ + D+A+ +S IS GL+EM+R+R+ SL + C C+G G+V Sbjct: 373 SHKNQVLEALKKELELDKAKTSVSDISELGLVEMTRKRVHESLLRTLCQPCEHCNGKGSV 432 Query: 414 RDNESLSLSILRLIEEEALK-ENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCV 472 + +++ I R I+ E+ N + I Y+ E+ + +E D Sbjct: 433 KTLQTICYDIFREIKSESKNYPNYNNFLLMSSKKIIDYIEREESIWLAELELEIDK-NIY 491 Query: 473 IVPNDQMETPHYHV 486 + Y + Sbjct: 492 LKAESNHIYNQYDI 505 >UniRef50_Q2G5W8 Ribonuclease E n=8 Tax=cellular organisms RepID=Q2G5W8_NOVAD Length = 935 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 214/657 (32%), Positives = 312/657 (47%), Gaps = 4/657 (0%) Query: 74 AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 A E + R I+DV++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN+ Sbjct: 193 ADELRAKRMALRRRYKIQDVIQRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNS 252 Query: 134 PRAGGISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWE 192 GGISR+I DR LK ++ LELP M IVRTAG+ ++ ++ D + + W+ Sbjct: 253 SHGGGISRKINSASDRKRLKTIISELELPRSMSCIVRTAGLQRTKPEIKRDFDYLARLWD 312 Query: 193 AIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDF 252 I++ AP LIH +S++I RA RD +DI E++++ A+ + L P Sbjct: 313 EIRERTMKSVAPALIHSDSDLIKRAIRDIYNRDIEEVVVEGEHGYRAAKDFMKLL-MPSH 371 Query: 253 SSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRG 312 + ++K Y +PLF Y E Q+ + + V+L SGG +VI+ TEAL +IDINS R+T+ Sbjct: 372 AKRVKAYADPVPLFQRYGAEDQLTAMYDPVVQLKSGGYLVINPTEALVSIDINSGRSTKE 431 Query: 313 GDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRA 372 IE+TA TNLEAA EIARQLRLRD+ GL+VIDFIDM + R VE +++A++ DRA Sbjct: 432 HGIEQTAVATNLEAAREIARQLRLRDMAGLVVIDFIDMEYGSNIRKVEKAMKDALKNDRA 491 Query: 373 RIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEAL 432 RIQ+ IS FGL+EMSRQRL + E++ CP C G+G VR S LS LRLIE+EA Sbjct: 492 RIQVGRISGFGLMEMSRQRLRTGVLEATTRACPHCDGSGLVRTASSAGLSALRLIEDEAA 551 Query: 433 KENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKG 492 K V A Y+LN KR+ + IE R GV ++P + E V R Sbjct: 552 KGKGNVVTLYASQEAAVYVLNAKRADLAEIEERY-GVTVEVIPEGENEGAKMRVAS-RGP 609 Query: 493 EETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVA 552 + + EE + E E P A D Sbjct: 610 KPEFVPRFEPIVEPEEDDVVEDAYEDEEEVEERAPRGNRAAEGDEGERSDGRRKRRKRRR 669 Query: 553 PAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPR 612 + L A G E + + + +R +R+ R Sbjct: 670 GRNRDRREDGTDGEVETSLDDAEADTDADAEGDEAEGNEAATSDENADENDRGPRKRRRR 729 Query: 613 QNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQ 672 RR E + ++++ + ++ + A E+ Sbjct: 730 GRRRRGGRENGENGADQSGHDEAEGDDAGAAEAVAEAAEAPAAEEAPAAAEPAVEPVVEE 789 Query: 673 QAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKV 729 + +R+R++ + A + E E V P + +R +KV Sbjct: 790 APAKPKRTRKKKVEAAPAPEAEAEAAPAAPEAAEPAAAEPVAEEAPAKPKRTRKKKV 846 Score = 111 bits (276), Expect = 2e-22, Method: Composition-based stats. Identities = 43/76 (56%), Positives = 55/76 (72%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 RMLI+A QEE RVA++ G R+ + D ES H+Q K NIY K+TR+EPSL+AAFVD+G Sbjct: 4 RMLIDARHQEETRVAVLKGNRIEEFDFESADHKQIKGNIYLAKVTRVEPSLQAAFVDFGG 63 Query: 63 ERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 64 NRHGFLAFSEIHPDYY 79 >UniRef50_D1Y9V9 S1 RNA binding domain protein n=3 Tax=Propionibacterium acnes RepID=D1Y9V9_PROAC Length = 874 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 140/420 (33%), Positives = 232/420 (55%), Gaps = 12/420 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R +I + ++A+++ L + ++ NIY GK+ + PS+EAAF+D Sbjct: 427 VDRKMIVRQSDDYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDI 486 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + I+ VL+ G +V+VQ+ K+ G KGA LT+ I Sbjct: 487 GRGRNAVLYAGEVDWAKYGKEGE---DKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHI 543 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 S+ G ++V P GISR++ +R LK+ + + +P +IVRTA G + E L Sbjct: 544 SVPGRFVVYSPGG-HLSGISRKLADSERKRLKKIVEN-NIPSDASVIVRTAAEGATEEDL 601 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDN----PKV 236 D++ WE I++ + AP +++ E ++ VR RD D E++I Sbjct: 602 VRDINRLKVQWEVIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDA 661 Query: 237 LELARQHIAALGRPDFSSKIKLYTG-EIPLFSHYQIESQIESAFQREVRLPSGGSIVIDS 295 + + ++ + P+ +S++ + + F+ Y+I+ Q+ A +R+V LPSGGS+VID Sbjct: 662 YDTIKAYVDHVA-PEMASRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDR 720 Query: 296 TEALTAIDINSARATRG-GDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVR 354 TEA+T ID+N+ + T G++E T NLEAA+EI RQLRLRD+GG+IVIDFIDM Sbjct: 721 TEAMTVIDVNTGKFTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPT 780 Query: 355 HQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVR 414 ++ + RL E + +DR R Q++ ++ GL++M+R+++ L E+ C C G G R Sbjct: 781 NRELLVRRLTECLGRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRR 840 >UniRef50_C0VZF1 Ribonuclease E n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VZF1_9ACTO Length = 819 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 149/415 (35%), Positives = 239/415 (57%), Gaps = 8/415 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 +KR +I Q ++A+++ L + + + NIY G++ + PS+EAAFVD Sbjct: 181 VKREMIVREQNGLNQIAVLEDGLLVEHYVARRTQQTMVGNIYLGRVQNVLPSMEAAFVDL 240 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ E A I+ L+ G V+VQ+ K+ G+KGA LT+ I Sbjct: 241 GKGRNAVLYAGEVNWEAVGL---AGRPRRIEQALKSGDTVLVQVTKDPIGHKGARLTSQI 297 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LAG YLVL+P GISR++ +RT LK+ L+ + +P+ G+IVRTA G + E L Sbjct: 298 TLAGRYLVLVPAGQMT-GISRKLPERERTRLKKLLSKI-VPKDYGVIVRTAAEGATEEQL 355 Query: 181 QWDLSFRLKHWEAIKKA-AESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + D++ WE I+K +++ P L+ E + VR RD +D + + + + Sbjct: 356 RDDVTRLQAQWEEIEKKQKKTQKVPVLLRSEPELAVRVVRDVFTEDFQSLTVQGEETWQT 415 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 ++++ L PD +++ + + +F+ ++I+ Q+ R+V LPSGGS+VID TEA+ Sbjct: 416 VQEYVDELA-PDLRDRLRRWVNKEDVFTVHRIDEQLTKGMDRKVWLPSGGSLVIDRTEAM 474 Query: 300 TAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 T ID+N+ + GG +EET NLEAA+EI RQLRLRD+GG++VIDF+DM ++ Sbjct: 475 TVIDVNTGKFIGSGGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVLESNRDL 534 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 V RL E + +DR R Q++ I+ GL++M+R+R+ L E+ C C G G + Sbjct: 535 VLRRLVECLGRDRTRHQVTEITSLGLVQMTRKRVGEGLVEAFSTPCECCDGRGFI 589 >UniRef50_B4RCR6 Ribonuclease, Rne/Rng family protein n=4 Tax=Alphaproteobacteria RepID=B4RCR6_PHEZH Length = 896 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 179/397 (45%), Positives = 249/397 (62%), Gaps = 3/397 (0%) Query: 88 PNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIE-GD 146 I++V+R Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I Sbjct: 143 YKIQEVIRRRQIMLVQVVKEERGNKGAALTTYLSLAGRYGVLMPNTARGGGISRKITTAT 202 Query: 147 DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFL 206 DR LK + SL++P GMGLIVRTAG ++ ++ D + L+ WE I++ AP L Sbjct: 203 DRKRLKSIVQSLDVPAGMGLIVRTAGAKRTKAEIKRDYDYLLRLWENIRETTLHSIAPAL 262 Query: 207 IHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLF 266 I++E +++ RA RD +D+ + ++ + AR + L P + K++LY PL+ Sbjct: 263 IYEEEDLVKRAIRDLYDKDVDNVWVEGEAGFKEARDFMRML-MPSQAKKVQLYREPTPLY 321 Query: 267 SHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEA 326 +++E + + V L SGG +VI+ TEAL AID+NS RATR +IE TA TN+EA Sbjct: 322 VKHKVEDHLSQIYSPVVPLRSGGYLVINQTEALVAIDVNSGRATRERNIEATALKTNMEA 381 Query: 327 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLE 386 A+E ARQLRLRDL GLIVIDFIDM ++ RAVE +L++ ++ DRAR+Q+ IS FGL+E Sbjct: 382 AEEAARQLRLRDLAGLIVIDFIDMDEAKNNRAVEKKLKDCLKDDRARVQMGKISPFGLME 441 Query: 387 MSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVP 446 +SRQR + E + HVC C GTG VR ES +L+ LR +E EALK E VP Sbjct: 442 ISRQRRRTGVLEGTTHVCEHCGGTGRVRSVESSALAALRALEIEALKG-GGEATLTVPRA 500 Query: 447 IASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPH 483 + Y+LNEKR + + V++ +D H Sbjct: 501 VGLYILNEKRGHLARLHHAFGLFVTVLIDDDMAHAEH 537 Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats. Identities = 41/77 (53%), Positives = 53/77 (68%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K MLI+A EE RV +VDG R+ + D ES +Q + NIY K+TR+EPSL+AAFV+YG Sbjct: 3 KTMLIDAAHAEETRVVVVDGNRVEEFDFESQNRKQLRGNIYLAKVTRVEPSLQAAFVEYG 62 Query: 62 AERHGFLPLKEIAREYF 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFNEIHPDYY 79 >UniRef50_UPI0001BC2E10 putative ribonuclease n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2E10 Length = 1076 Score = 501 bits (1291), Expect = e-140, Method: Composition-based stats. Identities = 188/636 (29%), Positives = 299/636 (47%), Gaps = 36/636 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDI-ESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 + R ++ E+ ++ +V+ + + E+ N+Y GK+ + PS+EAAF+D Sbjct: 434 VDRTMLVRESGEQTQLVVVEDGITVEHYLKENRQQSSLIGNVYLGKVQNVLPSMEAAFID 493 Query: 60 YGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G R+ L E+ + + A I+ L G V+VQ+ K+ G+KGA LT+ Sbjct: 494 IGKGRNAVLYAGEVNWDALGMDGKAR---RIEVALSPGDAVLVQVTKDPIGHKGARLTSQ 550 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ISL G +LV +P N GISR++ +R LK+ L L G+IVRTA G S + Sbjct: 551 ISLPGRFLVYVPGNSMT-GISRKLPDVERNRLKKLLKELVGDSN-GVIVRTAAEGASDKE 608 Query: 180 LQWDLSFRLKHWEAIKKAAESRP--APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 L D+ K WE I+K ++S AP L++ E ++IVR RD +D ++ID Sbjct: 609 LSTDVERLAKRWETIEKKSKSTKVLAPQLLYSEPDMIVRIIRDVFNEDFSSLVIDGDGAW 668 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 +++ A+ PD ++ Y+ + +F HY++E Q++ A QR V LPSGGS+VID TE Sbjct: 669 NTIHEYVEAVA-PDLLDRVHRYSEDEDIFDHYRVEEQVQKALQRTVNLPSGGSLVIDRTE 727 Query: 298 ALTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 A+T ID+N+ + T GG++EET NLEAA+E+ RQ+RLRD+GG+IV+DFIDM ++ Sbjct: 728 AMTVIDVNTGKFTGSGGNLEETVTRNNLEAAEEVIRQVRLRDIGGIIVVDFIDMVLESNR 787 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVR-- 414 V RL E + +DR + Q++ ++ GL++M+R+R+ L ES SG G + Sbjct: 788 DLVVRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRIGTGLAESLVSAGADLSGRGLLLPG 847 Query: 415 DNE--SLSLSILRLIEEEALKENTQEVHAIVPVPI---------ASYLLNE-KRSAVNAI 462 E S + R + + + N+ RSAV AI Sbjct: 848 SEEDGSKAHHGNRSSNNDGGNSRRDRKRRGDNKSSSKSNDSDGQSDTVANDASRSAVAAI 907 Query: 463 ----------ETRQDGVRCVI-VPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMA 511 E+++ G V ++ + + + +G E + + Sbjct: 908 AKATLKKDEAESKEPGSSQDASVSDNASSSANTDSSKDSQGNEPSDSAGNGGSGRSRTRS 967 Query: 512 LPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLL 571 + + + V P P +PA A A A P PA L Sbjct: 968 NRRRSQAKSADSSDSAQDQSAQDTTVDETPAPEQPAQEQPAQAKPARAKKPEVPAAELPL 1027 Query: 572 SRFFGALKALFSGGE-ETKPTEQPAPKAEAKPERQQ 606 + + + P +PA K+EAK E Q Sbjct: 1028 MIGADSATKVAKAEPVKAAPRRKPAAKSEAKSETAQ 1063 >UniRef50_C7NH23 RNAse G n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NH23_KYTSD Length = 959 Score = 501 bits (1289), Expect = e-140, Method: Composition-based stats. Identities = 154/414 (37%), Positives = 235/414 (56%), Gaps = 6/414 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R ++ E +V +++ L + I+ N+Y G++ + PS+EAAFVD Sbjct: 314 VHRTMVVRESAEYTQVGVLEDGVLVEHYIDRQQQTTMVGNVYLGRVQNVLPSMEAAFVDI 373 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+G L E+ + A + I+ L+ GQ V+VQ+ K+ G+KGA LT I Sbjct: 374 GKGRNGVLYAGEVNWDA--AGLPKGEQKRIESALQPGQPVLVQVTKDPIGHKGARLTGQI 431 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLV +P N GISR++ +R LK+ L + +P G+IVRTA G + L Sbjct: 432 SLPGRYLVYVPGNT-TTGISRKLPDTERARLKKILKDV-VPADAGVIVRTAAEGAAEAEL 489 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 + D+ WE I A AP L+H E ++ VR RD +D ++++ P E Sbjct: 490 RADVERLTTQWERIAAAQAKGSAPTLVHGEPDLTVRVIRDVFNEDFTKLVVSGPTAWESV 549 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 +I A+ PD + K++ + GE +F H++IE QI A R+V LPSGGS++ D TEA+T Sbjct: 550 TSYIDAVA-PDLTPKLERWEGEQDVFEHHRIEEQIAKAMDRKVWLPSGGSLIFDRTEAMT 608 Query: 301 AIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +D+N+ + GG++EET N+EAA+EI RQLRLRD+GG+IV+DFIDM ++ V Sbjct: 609 VVDVNTGKFVGSGGNLEETVTKNNIEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLV 668 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 RL E + +DR + Q++ ++ GL++M+R+R+ L E C C G G V Sbjct: 669 VRRLVECLARDRTKHQVAEVTSLGLVQMTRKRVGSGLVEVYGETCEHCDGHGLV 722 Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 33/242 (13%), Positives = 72/242 (29%), Gaps = 3/242 (1%) Query: 562 PAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKP---RQNNRRD 618 QPG + F A + +EQ + +P R+ R R RR Sbjct: 3 ADQTQQPGSFALLFQAPDPEAMRATRQRGSEQEVDDEQERPTRRSRRDAQDAGRPEGRRQ 62 Query: 619 RNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRE 678 + R E D E R+ +A + + ++ ES + ++ A ++ R Sbjct: 63 QGRGNARRGRSGEDQDAAVEQDRDDSEAGRDSGDSDESTGGRQRPQRRTRARGERGSSRG 122 Query: 679 RSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEE 738 + D + + + + Q R + ++ E+S Sbjct: 123 QRGDEGRDGGDDDPTSSGRGGSARGEDSGRDDRDDQDQQDDRGPQGGHEDDDSEESGGRR 182 Query: 739 AVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRS 798 + ++ + + + + + D+ + G RR+ Sbjct: 183 SRRRRGGRGRGQSDEGAEGGQGRGGRPSERSQDDDEDGSGDGSGVSGDDDSEQGRGSRRA 242 Query: 799 RR 800 R+ Sbjct: 243 RK 244 >UniRef50_D1BV45 Ribonuclease, Rne/Rng family n=2 Tax=Actinomycetales RepID=D1BV45_XYLCX Length = 1043 Score = 500 bits (1288), Expect = e-140, Method: Composition-based stats. Identities = 148/422 (35%), Positives = 231/422 (54%), Gaps = 8/422 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R +I + ++A+++ L + + N+Y G++ + PS+EAAFVD Sbjct: 551 VSRSMIVRERDGRTQIAVLEDGVLVEHYVSQQSQSSMVGNVYLGRVQNVLPSMEAAFVDV 610 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + A I+ L+ G V+VQ+ K+ G+KGA LT+ + Sbjct: 611 GKGRNAVLYAGEVNWDA--AGLDGGQPRRIEQALKSGDSVLVQVTKDPIGHKGARLTSQV 668 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LAG YLVL+P GISR++ +R LK+ L + +PEG G+IVRTA G S E L Sbjct: 669 TLAGRYLVLVPGGGMT-GISRKLPDVERNRLKKVLRDI-VPEGAGVIVRTAAEGASEEEL 726 Query: 181 QWDLSFRLKHWEAIKKAAESRP--APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 + D+ W I A AP L+ E ++ +R RD D +++ + Sbjct: 727 RADVERLQNQWTGITTKAGRASTSAPALLQGEPDLAIRVVRDIFNDDFSSLIVQGDGAWQ 786 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 ++ L PD ++ +T +FS ++++ Q+ R+V LPSGGS+VID TEA Sbjct: 787 EVAGYVEELA-PDLRERVTSWTENTDVFSVHRVDEQLAKGMDRKVWLPSGGSLVIDRTEA 845 Query: 299 LTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 +T ID+N+ + T GG +EET NLEAA+EI RQLRLRD+GG+IVIDFIDM ++ Sbjct: 846 MTVIDVNTGKFTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRD 905 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V RL E + +DR + Q++ ++ GL++M+R+R+ L E+ C C G G + E Sbjct: 906 LVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSETCEHCKGRGFIVHAE 965 Query: 418 SL 419 + Sbjct: 966 PI 967 >UniRef50_A0R152 Ribonuclease, Rne/Rng family protein n=9 Tax=Corynebacterineae RepID=A0R152_MYCS2 Length = 1037 Score = 500 bits (1287), Expect = e-139, Method: Composition-based stats. Identities = 145/416 (34%), Positives = 230/416 (55%), Gaps = 16/416 (3%) Query: 14 LRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEI 73 ++A+++ + + + S NIY G + + PS+EAAFVD G R+G L E+ Sbjct: 402 TQIAVLEDGVVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 461 Query: 74 AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 E I+ L+ G V+VQ+ K+ G+KGA LTT +SLAG YLV +P Sbjct: 462 NWEAAGLGGQNR---KIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGA 518 Query: 134 PRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEA 193 GISR++ +R LKE L + +P G+I+RTA G E ++ D+ K W Sbjct: 519 SST-GISRKLPDTERQRLKEILREV-VPSDAGVIIRTASEGVKEEDIRSDVERLQKRWSE 576 Query: 194 IKKAA-----ESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALG 248 I+ A + A +++E +V+V+ RD +D +++ + ++ A+ Sbjct: 577 IEAKAAEVTEKKAGAAVALYEEPDVLVKVIRDLFNEDFSSLIVSGDEAWNTINSYVEAVA 636 Query: 249 RPDFSSKIKLYT----GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDI 304 PD ++ Y +F+ ++I+ Q+ A R+V LPSGG++VID TEA+T +D+ Sbjct: 637 -PDLMPRLTKYEPAGPDAPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVVDV 695 Query: 305 NSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL 363 N+ + T GG++E+T NLEAA+EI RQLRLRD+GG++VIDFIDM ++ V RL Sbjct: 696 NTGKFTGSGGNLEQTVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRL 755 Query: 364 REAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 EA+ +DR R Q+S ++ GL++++R+RL L E+ C C G G V + + Sbjct: 756 TEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTACTHCGGRGIVLHGDPI 811 >UniRef50_C8WCX7 Ribonuclease, Rne/Rng family n=3 Tax=Zymomonas mobilis RepID=C8WCX7_ZYMMN Length = 912 Score = 500 bits (1286), Expect = e-139, Method: Composition-based stats. Identities = 229/706 (32%), Positives = 339/706 (48%), Gaps = 21/706 (2%) Query: 71 KEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLM 130 + + I+DV+R Q ++VQ+ KEERGNKGAALTT++SLAG Y VLM Sbjct: 129 DSLENLRNRRRHFGRHHYRIQDVIRRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLM 188 Query: 131 PNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLK 189 PN GGISR+I DR LK +A L LP MG IVRTAG+ ++ ++ D + + Sbjct: 189 PNTSNGGGISRKISNLADRKRLKSIMAELNLPSSMGCIVRTAGLQRTKTEIKRDFDYLAR 248 Query: 190 HWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGR 249 W+ I++ AP LI+ +S+++ RA RD ++I EIL++ AR + L Sbjct: 249 LWDEIREKTLLSQAPALIYGDSDLVKRAIRDIYSREIDEILVEGDDGYRAARNFMKLL-M 307 Query: 250 PDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARA 309 P K++ Y PLF + +E+Q+ + +Q V+L SGG +VI+ TEAL +IDINS R+ Sbjct: 308 PSHVRKVRPYADPAPLFQRFGVEAQLNAMYQPIVQLKSGGYLVINPTEALVSIDINSGRS 367 Query: 310 TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQ 369 TR +IE+TA TNLEAA EIARQLRLRD+ GLIVIDFIDM + R VE +++A++ Sbjct: 368 TREHNIEQTATATNLEAAAEIARQLRLRDMAGLIVIDFIDMESSANIRRVEKAMKDALKH 427 Query: 370 DRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEE 429 DRARIQ+ HIS FGL+EMSRQRL + E+S CP C G+G + S L LR+IE+ Sbjct: 428 DRARIQVGHISSFGLMEMSRQRLRTGMLEASTVPCPHCQGSGLMLTTPSAGLMALRMIED 487 Query: 430 EALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRV 489 EA + N ++H + + A Y+LN+KR + +IET GV +I + V Sbjct: 488 EASRGNGSQIHVLTSLDSAIYVLNKKRKELGSIETLY-GVTILIDGDPLRGNNQISVES- 545 Query: 490 RKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAP 549 P S+ L + P E + E + E + + + P + A Sbjct: 546 ----AGPPPSHGLMLPPPLPTSSPDEIDDYEEEP-EIEEIEAEEVIEAPFRRNHRQNMAR 600 Query: 550 VVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRR 609 + +P A +A + E+ E + R+ R Sbjct: 601 RNSSYNAEVAIQDNQRMEP------KEATQAFLNTEEDASHEEDSEHSRRNRRSRRGRRG 654 Query: 610 KPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTA 669 R+N + SE +E + E+ + ++ +++ TE+ A Sbjct: 655 GRRRNGENFAEKPLMLSSEASEATSPDEDTPIKESYESEALPVEKDVAEKSTPTEETSEA 714 Query: 670 DEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKV 729 + + A RR + + E+ +V E V + + + +K Sbjct: 715 ENKTARSSRTRRRPRARSPKVESESYQ---APANVLHEETPPTETAVVEVKNEEPIAEKP 771 Query: 730 RYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQ 775 E AE AVVA ETV + T K P A Sbjct: 772 ATE---AETAVVASSEPETVEETKPKRVRKRTTTTRRKKAEPKTAD 814 Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats. Identities = 40/76 (52%), Positives = 52/76 (68%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 +MLI+A +EE RVA++ G R+ + D ES Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 5 KMLIDARHREETRVAVIKGNRIEEFDFESADRRQLKGNIYLAKVTRVEPSLQAAFVDYGG 64 Query: 63 ERHGFLPLKEIAREYF 78 R GFL EI +Y+ Sbjct: 65 NRQGFLAFSEIHPDYY 80 >UniRef50_A3ZLB1 Ribonuclease E n=4 Tax=Planctomycetaceae RepID=A3ZLB1_9PLAN Length = 588 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 167/412 (40%), Positives = 243/412 (58%), Gaps = 4/412 (0%) Query: 82 YSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISR 141 +P I+++ + G EV+VQ+ KE G+KG L+T+IS+ G YLVLMP R G+SR Sbjct: 164 MRPRVKPPIQEIFKRGDEVLVQVIKEGIGSKGPTLSTYISIPGRYLVLMPALGRV-GVSR 222 Query: 142 RIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAES 200 +IE D R L+ L L P+G+G IVRTAG ++ + L D+++ L+ W+ I + ++ Sbjct: 223 KIEDDQVRRRLRSTLLELSPPKGLGFIVRTAGQERNKKELSRDMAYLLRLWKVIVRRLKN 282 Query: 201 RPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYT 260 P I++ES++I+R RD D+ I +D+ E A++ + L P +++K Y Sbjct: 283 TTGPCDIYEESDMIIRTIRDIFSSDVDSIYVDSEPAYERAKEFLQ-LVMPRHVNRLKKYE 341 Query: 261 GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAF 320 + PLF Y ++ +I QREV L GGSIVID TEAL AID+NS G EE A+ Sbjct: 342 SKDPLFHKYHLDEEIARINQREVPLRRGGSIVIDQTEALVAIDVNSGNFRYDGTAEEAAY 401 Query: 321 NTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHIS 380 N+ AA EIARQLRLRDLGG++V DFIDM +H+R VE LR++V++DRAR +I S Sbjct: 402 QLNMMAAKEIARQLRLRDLGGVVVNDFIDMRREKHRRNVERALRDSVKRDRARTKILKTS 461 Query: 381 RFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVH 440 FGL+EM+RQR+ PSL S CP C G G V+ ES+++ ++R++ A + V Sbjct: 462 PFGLIEMTRQRIRPSLKRSVFKDCPCCKGRGVVKSAESMAIEVVRMLLAAAHHDGASHVT 521 Query: 441 AIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKG 492 V +A+YL N+KR + IE + V I ++ H V V Sbjct: 522 IRVNDEVATYLNNKKRRELARIEEDTNIV-VQIYGSESFYPEHLEVECVDAD 572 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 33/79 (41%), Positives = 52/79 (65%), Gaps = 1/79 (1%) Query: 1 MKR-MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 MK+ MLIN +Q EE R+A+V+ L + +E + NIYKG + +EPS++AAFVD Sbjct: 1 MKKEMLINVSQPEECRIAIVEDGILEEFYLERTSQDNYVGNIYKGVVVNLEPSIQAAFVD 60 Query: 60 YGAERHGFLPLKEIAREYF 78 +G ++GFL + ++ +YF Sbjct: 61 FGVGKNGFLHISDVEPQYF 79 >UniRef50_C3W9J7 Ribonuclease G and E n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3W9J7_FUSMR Length = 488 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 168/490 (34%), Positives = 270/490 (55%), Gaps = 21/490 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M +++IN + + R A+++ +++ ++ IE + ANIYKGK+ + P +E+AFV+ Sbjct: 1 MNQIVINIDEF-QSRAAIIEDEKVVEVLIEREEERRINANIYKGKVANVLPGMESAFVNI 59 Query: 61 GAERHGFLP---LKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALT 117 G E++ FL L+E +Y ++ I+D+L G EV+VQ+ E RG KGA +T Sbjct: 60 GLEKNAFLYVNDLREFEEKYLDGICNSERP--IEDILTVGDEVVVQVLSEPRGTKGARVT 117 Query: 118 TFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSA 177 T ++ G YLVLMPNN IS++I+ ++ E + PE MG+I+RTA GKS Sbjct: 118 THYTIPGKYLVLMPNNNHI-AISKKIKEEEERNRLEEIVRDLKPENMGVIIRTAAQGKSI 176 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 + ++ + +K WE I+K + ++++++ ++ RD +I E++IDN +V Sbjct: 177 FHFEREMEYLVKKWEDIEKKTSTAKIGEVLYKDNGIVATVLRDIFSNEIDELVIDNEEVY 236 Query: 238 ELARQHIAALGRPDFSSKIKLY-TGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDST 296 +I A +KIKLY EI +F Y IE +IE+A + EVRL GG +VI T Sbjct: 237 WEVIDYINAFSEKTLKTKIKLYNDDEIGIFERYGIEKEIENALKEEVRLECGGYLVIQKT 296 Query: 297 EALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 EAL +ID+N+ + T ++E+T NTNLEAA EI RQLRLR+LGG+I+IDFIDM + Sbjct: 297 EALISIDVNTGKNTGSYNLEQTVLNTNLEAAREIPRQLRLRNLGGIIIIDFIDMRLEEDK 356 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDN 416 V L + + +DR + I H + GL+EM+R+R L CP C GTG ++ Sbjct: 357 LKVLEALEQNLSKDRIKNNIVHFTDLGLIEMTRKRTGKPLYNYFQERCPMCEGTGKIKSK 416 Query: 417 ESLSLSILRLIEEEALKENTQEVHAIVPVP------------IASYLLNEKRSAVNAIET 464 +S+ ++ I+E A E+ + I+ + ++ N K+ + E Sbjct: 417 DSVIHEMMTEIKECAKDEDINIIKVILSKKLKIAFKELYFDFVEDFVKNRKKKIILE-EN 475 Query: 465 RQDGVRCVIV 474 Q+ I+ Sbjct: 476 SQNDYSYEII 485 >UniRef50_D1BDM1 Ribonuclease, Rne/Rng family n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BDM1_SANKS Length = 1265 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 145/418 (34%), Positives = 238/418 (56%), Gaps = 7/418 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 ++R +I + ++A+++ L + + N+Y G++ + PS+EAAF+D Sbjct: 685 VERSMIVRERNGRTQIAVLEDGVLVEHYVSQQSQASMAGNVYLGRVQNVLPSMEAAFIDV 744 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + I+ L+ G V+VQ+ K+ G KGA LT+ + Sbjct: 745 GKGRNAVLYAGEVNWDAAGMEGQPR---RIEQALKSGDSVLVQVTKDPIGQKGARLTSQV 801 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LAG YLV +P GISR++ +R LK+ L + +PE G+IVRTA G S E L Sbjct: 802 TLAGRYLVYVPGGGMT-GISRKLPDTERARLKKILREV-VPETAGVIVRTAAEGASEEEL 859 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 + D++ WEAI+K +++ AP L+ E ++ +R RD D + + Sbjct: 860 RADIARLQGQWEAIEKKSKTASAPALLQGEPDLAIRVVRDIFNDDFTSLTVSGDGAWSEI 919 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 +++ AL PD + ++K +T + +F+ +I+ Q+ R+V LPSGGS+VID TEA+T Sbjct: 920 SEYVNALA-PDLAERVKRWTSDKDVFAEARIDEQLAKGMDRKVWLPSGGSLVIDRTEAMT 978 Query: 301 AIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +D+N+ + T GG +EET NLEAA+EI RQLRLRD+GG+IV+DFIDM ++ V Sbjct: 979 VVDVNTGKFTGSGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLV 1038 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 R+ E + +DR + Q++ ++ GL++M+R+R+ L E+ C C+G G + +E Sbjct: 1039 LRRMVECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSETCDHCNGRGFIVHDE 1096 >UniRef50_A3EQR7 Ribonucleases G and E n=3 Tax=Leptospirillum RepID=A3EQR7_9BACT Length = 527 Score = 496 bits (1278), Expect = e-138, Method: Composition-based stats. Identities = 172/528 (32%), Positives = 265/528 (50%), Gaps = 49/528 (9%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 +LI+ + EE +VALV+ ++L + E NIYKG++ ++ P ++AAFVD G Sbjct: 2 EILIHVSH-EETKVALVENRQLAEFFFERKREAGVVGNIYKGRVNKVLPGMQAAFVDVGL 60 Query: 63 ERHGFLPLKEI----------------------------------------AREYFPANY 82 E+ FL + +I P Sbjct: 61 EKAAFLYVDDIYVEGSDILPGEMPQDDQTAPPPPVEGESPAEGSLTEDPAAGPVSRPEPP 120 Query: 83 SAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRR 142 R I+++L EGQE+++Q+ KE KG TT+ISL G YLV MP G+SRR Sbjct: 121 RKVPRKPIEEILTEGQEILIQMTKEPISTKGPRATTYISLPGRYLVYMPQVNHV-GVSRR 179 Query: 143 IEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESR 201 I ++R LKE + +L+ +G G I+RT G S + D+ F W+ I+ AE+ Sbjct: 180 ITNEEERQRLKEMVNALKGGKG-GYIIRTVAEGMSESEARSDIIFLELLWQDIRSRAETM 238 Query: 202 PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTG 261 AP L+ ++ +V+ R RDYL ++ + ID+ K + I PD++S+++L+ G Sbjct: 239 KAPSLVREDLDVVFRTIRDYLTHEVETLYIDDVKEYKRVMDFIGTY-MPDYASRVRLWEG 297 Query: 262 EIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFN 321 PLF+ Y IE Q+ A +++V L SGG +VID EALT ID+N+ R D E T Sbjct: 298 PTPLFASYDIERQLSKALEKKVWLKSGGYLVIDRAEALTVIDVNTGRFVGENDPESTILQ 357 Query: 322 TNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISR 381 TNLEA EIARQLRLR++GG+I+IDFIDM +++ V L+E++ D+AR IS Sbjct: 358 TNLEAVTEIARQLRLRNIGGIIIIDFIDMEKEKNREKVFQGLQESLAHDKARTNALKISD 417 Query: 382 FGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE---ALKENTQE 438 GL+EMSR+R+ L C C G G + +++ IL + ++ Sbjct: 418 LGLVEMSRKRVREDLVHLLGETCAYCDGKGYTKSLRTIAYEILEELRSVPSGGQNPKEKK 477 Query: 439 VHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHV 486 V I + L E+R + A+E + + +I P+ + + Sbjct: 478 AILFVHPEIQTILQEEERDFLQAVERKIRR-QIIIKPDPLSHIEEFSI 524 >UniRef50_C5VAX0 Ribonuclease E n=5 Tax=Corynebacterium RepID=C5VAX0_9CORY Length = 929 Score = 496 bits (1277), Expect = e-138, Method: Composition-based stats. Identities = 145/444 (32%), Positives = 235/444 (52%), Gaps = 16/444 (3%) Query: 14 LRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEI 73 +V +++ L + + S NIY G++ + P++EAAF+D G R+G L E+ Sbjct: 306 TQVGVLEDDMLVEHFVTSDTQSSLAGNIYLGRVQNVLPAMEAAFIDIGKGRNGVLYAGEV 365 Query: 74 AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 I+ L+ G +V+VQ+ K+ G KG LTT ISLAG YLV +P Sbjct: 366 DWRAANL---GGRHRKIEQALKSGDQVLVQVAKDPIGQKGPRLTTQISLAGRYLVYVPGG 422 Query: 134 PRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEA 193 ++ GISR++ +R LK L ++ +P +I+RTA G +A+ D++ WE Sbjct: 423 -KSAGISRKLPAPERKRLKAILKNV-VPADGSVIIRTAAEGVPEDAIAADVNRLHSLWEQ 480 Query: 194 IKKAAESRP-----APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALG 248 I++ P +++E N++V+ RD +D +++D + +I ++ Sbjct: 481 IQERTLKEKESKGTKPVTMYEEPNMLVKVVRDLFNEDFTSLVVDGNRAWNTVHAYIQSVA 540 Query: 249 RPDFSSKIKLYT----GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDI 304 PD +++ + F +++ Q++ A R+V LPSGG++VID TEA+T ID+ Sbjct: 541 -PDLLDRLEKFDREAHDGQDAFEALRVDEQLKKALSRKVWLPSGGTLVIDRTEAMTVIDV 599 Query: 305 NSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL 363 N+ + T GG++EET NLEAA+EI RQ+RLRDLGG+IV+DFIDM +Q V RL Sbjct: 600 NTGKFTGSGGNLEETVTKNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRL 659 Query: 364 REAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSI 423 EA+ +DR R QIS ++ GL++++R+RL L E+ C CSG G + ++ + Sbjct: 660 TEALGRDRTRHQISEVTSLGLVQITRKRLGTGLLETFATECEECSGRGVLIHDDPVEHHT 719 Query: 424 LRLIEEEALKENTQEVHAIVPVPI 447 + E K + Sbjct: 720 ISDRPERRGKHGVPHQDPTRHPAV 743 >UniRef50_Q11NU1 Ribonuclease G n=10 Tax=Bacteroidetes RepID=Q11NU1_CYTH3 Length = 535 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 143/475 (30%), Positives = 241/475 (50%), Gaps = 27/475 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M L ++ Q R+AL+ +RL + E + +IY G + ++ P L AAF+D Sbjct: 1 MSNELFISSSQSGDRIALIQEKRLVEYQFEDHTRKFNVGDIYLGTVRKVVPGLNAAFIDV 60 Query: 61 GAERHGFLPLKEIAREY----------------------FPANYSAHGRPNIKDVLREGQ 98 G E+ FL ++ + F + VL +G Sbjct: 61 GYEKDAFLHYFDLGPKIKSLTKFTKNAITSASTPALLKKFELEAEIKKDGKVSQVLEKGN 120 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALAS 157 ++VQ+ KE KG L+ ISLAG YLVL+P + +S++I ++R L ++S Sbjct: 121 PILVQVVKEPISTKGPRLSCEISLAGRYLVLVPFSN-VVSVSKKITDKEERQRLVRLISS 179 Query: 158 LELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRA 217 + PE G+I+RT K L DL +K WE + LI E + Sbjct: 180 IR-PENFGVIIRTVASNKEVAELDKDLRNLVKTWEDGIAILKKARPRDLIIGELDRTSSI 238 Query: 218 FRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIES 277 RD L + I +D ++ + R +I + PD +KL+ G+ +F +E Q+++ Sbjct: 239 LRDMLNESFDSINVDTKELYDDLRSYIKNIA-PDKERLVKLHQGKTKMFESTGVEKQLKT 297 Query: 278 AFQREVRLPSGGSIVIDSTEALTAIDINSA-RATRGGDIEETAFNTNLEAADEIARQLRL 336 F + V L GG ++I+ TEAL ID+NS ++ EETA +TNLEA E+ARQLRL Sbjct: 298 LFGKSVSLSGGGYLIIEHTEALHVIDVNSGNKSNNETSQEETALHTNLEACREVARQLRL 357 Query: 337 RDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSL 396 RD+GG+IV+DFIDM + +++ + R++ ++ DR++ I +S+FGL++++R+R+ P Sbjct: 358 RDMGGIIVVDFIDMKNLDNRKVIYERMKLEMKDDRSKNVILPLSKFGLMQITRERVRPQT 417 Query: 397 GESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYL 451 + VCP C+GTG + + +++ I ++ K+N + + ++ I +Y Sbjct: 418 NLITMEVCPTCNGTGKISASIAITDQIEHKLDYIITKQNEKNITLVLHPYIYAYF 472 >UniRef50_B0K422 Ribonuclease, Rne/Rng family n=12 Tax=Thermoanaerobacterales RepID=B0K422_THEPX Length = 474 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 151/488 (30%), Positives = 264/488 (54%), Gaps = 17/488 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKR++++ + ++AL++ +L + E + NIYKGKI + ++AAFVD Sbjct: 1 MKRLILDIDENL-SQIALLENGKLKEYHPEKRDGKNILGNIYKGKIQNVLKGMQAAFVDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++ FL ++ + +I VL+ GQ ++VQ+ KE G K +T I Sbjct: 60 GIGKNAFLFFDDVL------FQQENLPKSITQVLKPGQPIMVQVSKEAVGMKNPRVTANI 113 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 SL G Y+VLMPN GIS RIE + +R L+E + L+ PEG+G+IVRTA + + + Sbjct: 114 SLPGKYVVLMPNVDYI-GISHRIEEEVERKRLQEIVKKLK-PEGIGIIVRTAALEATEQQ 171 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 ++ DL ++ +E I+K ++ P P LI++E + ++ RD L ++ EI++++ + E Sbjct: 172 IREDLEELIRLYEKIQKDFQNAPLPSLIYKEEDFAIKYLRDLLSDEVDEIVVNDKEEYEN 231 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 ++++ +G I + E L Y + Q++ +++V L SGG ++ID TEAL Sbjct: 232 IKRYLKNVG----KENISVTYEEGDLLGIYGADFQVDKLLEKKVWLKSGGFVIIDQTEAL 287 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+N+ + +EET + TNLEAA+EIA QL+LRD+GG+I+IDFIDM +R + Sbjct: 288 TVIDVNTGKYVGKSSLEETIYKTNLEAAEEIALQLKLRDIGGIIIIDFIDMKNENFKRDL 347 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 + +++DR + + ++ GL+EM+R+R+ +G CP C G G V E + Sbjct: 348 LEFFKRELQKDRTKCTVLGYTQLGLVEMTRKRVRSQVGSYLKEKCPICEGEGMVYSTEYI 407 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 + IE N ++++ + + +EK + + V +V ++ Sbjct: 408 YRRLRNNIERVLRHVNARKIYIKGNDKVVK-IASEK--GIIKFYKEKFNVDLELVVDNNK 464 Query: 480 ETPHYHVL 487 + H+ + Sbjct: 465 KYGHFEIE 472 >UniRef50_A4F9K3 Ribonuclease, Rne/Rng family n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F9K3_SACEN Length = 1075 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 197/716 (27%), Positives = 306/716 (42%), Gaps = 48/716 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R ++ ++ ++A+++ L + + S G N+Y G++ + PS+EAAFVD Sbjct: 401 VDRRMVVRENGDQTQIAVLEDNVLVENFVTSAGSGSLVGNVYLGRVQNVLPSMEAAFVDI 460 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + A I+ L G V+VQ+ K+ G+KGA LTT I Sbjct: 461 GRGRNAVLYAGEVDWDAAGL---AGKARRIEQALSTGDSVLVQVTKDPVGHKGARLTTQI 517 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G +LV +P A GISR++ ++R LKE L + +PE G+I+RTA G S EAL Sbjct: 518 SLPGRFLVYVPGG-GATGISRKLPDNERKRLKEILKRI-VPENAGVIIRTASEGTSEEAL 575 Query: 181 QWDLSFRLKHWEAIKKAAESRPA--PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 D+ WE IK+ A+S A P L+++E +++++ RD +D + + + + Sbjct: 576 DRDVRRLQAQWEVIKEKADSPKAQAPQLLYEEPDLLIKVVRDLFTEDFSAMAVQGNQAWD 635 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 ++ + PD + ++ + G+ +F+ +I QI A R+V LPSGG +VID TEA Sbjct: 636 TIEAYVKHVA-PDLAGRLSKHVGKNDVFTEQRISEQIAKALDRKVWLPSGGYLVIDRTEA 694 Query: 299 LTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 +T ID+N+ + T GG++EET NLEAA+EI RQLRLRD+GG+IVIDFIDM ++ Sbjct: 695 MTVIDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRD 754 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V RL E + +DR R Q++ ++ GL++M+R+R+ L E+ C C G G + + Sbjct: 755 LVLRRLTECLGRDRTRHQVAEVTSLGLVQMTRKRVGTGLLEAYSSTCEHCRGRGLLVSTD 814 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 ++ + + Sbjct: 815 PVTHAHTNGSGGGGGGGRRNRNRGK---------------------------------SQ 841 Query: 478 QMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 + ETP V E E P ++E AERK A Sbjct: 842 EPETP--VVEAAPAAEPEAKAEPAAEAPKPEKQEKPQKQEKAERKAAAAAEQPVRADKAP 899 Query: 538 PPA----PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQ 593 PA P AE A PV A P AP P + A S EE PT Sbjct: 900 EPAKAEQPVEAERAEPVKATEPAPAPEAVEEPVAEQPEAAAPAAEPVRASQPEEAAPTPA 959 Query: 594 PAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAET 653 P+ A+ + + + R + + T Sbjct: 960 SQPEPAAEESSEPAVNGRARRRKVSRPAGSAGAPAAPVVVAVPAKPAESSESQDNGVPST 1019 Query: 654 RESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQ 709 A + R+A P + + R D + E S E Sbjct: 1020 PPPAAAAVSRRRGRSASRPAGPPVDGGQNRQSDAAADGAAGTSEESGESSGASAES 1075 >UniRef50_D1I512 Whole genome shotgun sequence of line PN40024, scaffold_57.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1I512_VITVI Length = 934 Score = 494 bits (1272), Expect = e-138, Method: Composition-based stats. Identities = 149/524 (28%), Positives = 254/524 (48%), Gaps = 68/524 (12%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG-- 61 +LIN++ R+A+++ L +L +E + ++Y G +T++ P + AFV+ G Sbjct: 344 ILINSSICTMQRIAVLEDGSLVELLLEPVKSNVQCDSVYLGVVTKLVPHMGGAFVNIGIQ 403 Query: 62 --------------------------------AERHGFLP------LKEIAREYFPANYS 83 + FLP + Sbjct: 404 FAHDDFEEHEVEDDFDVLIKKDLNGSIVDHDSETINNFLPVELEKGFHDSQLPPLLEMKD 463 Query: 84 AHGRPNIKDVL---REGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGIS 140 + +++ ++G ++IVQ+ KE G KG LT + L + VL+ R G+S Sbjct: 464 SRQAYTVENKWAQVQKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTCCNRI-GVS 522 Query: 141 RRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAES 200 ++I G +RT L+ +L+ P+G GL VRT G + E LQ DL L W+ I + A+S Sbjct: 523 KKISGVERTRLRVIAKTLQ-PKGFGLTVRTVAAGHTLEELQKDLEGLLSTWKNIVEHAKS 581 Query: 201 RP----------APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 P ++H+ + +DY + + +++D+P+ ++ + P Sbjct: 582 AALAADEGVEGAIPVILHRAMGQTLSVVQDYFNEKVESMVVDSPRTYHEVTNYLQEIA-P 640 Query: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 D +++LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N Sbjct: 641 DLCDRVELYNKRVPLFDEFNIEEEINNILSKRVPLPNGGSLVIEQTEALVSIDVNGGHGM 700 Query: 311 --RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVR 368 G E+ + NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV Sbjct: 701 LGNGTSQEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMLDDSNKRLVYEEVKKAVE 760 Query: 369 QDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLI- 427 +DR+ +++S +SR GL+E++R+R+ PS+ C C GTG V E+ I + I Sbjct: 761 RDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHGTGRVEALETSFSKIEQEIC 820 Query: 428 ------EEEALKENTQ---EVHAIVPVPIASYLLNEKRSAVNAI 462 EE+A EN +V + +YL + KR+ + + Sbjct: 821 RLLAMTEEKADPENPNSWPRFILMVDRFMCNYLTSGKRTRLAIL 864 >UniRef50_C2BMV7 Ribonuclease E n=3 Tax=Corynebacterium RepID=C2BMV7_9CORY Length = 1294 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 212/839 (25%), Positives = 353/839 (42%), Gaps = 52/839 (6%) Query: 14 LRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEI 73 +V +++ L + + + NIY G++ + PS+EAAFVD G R+G L EI Sbjct: 422 TQVGVLEDDLLVEHFVTTESQASLIGNIYLGRVQNVLPSMEAAFVDIGQGRNGVLYAGEI 481 Query: 74 AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 + A +++ L+ G +V+VQ+ K+ G+KGA LTT ISLAG YLV +P Sbjct: 482 DWRKTKLHGRAR---KVENALKSGDQVLVQVAKDPIGHKGARLTTQISLAGRYLVYVPGG 538 Query: 134 PRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEA 193 R+ GISR++ +R LK+ L + +P G I+RTA EA+ D++ WE Sbjct: 539 -RSAGISRKLPAPERKRLKDILGRV-VPGDGGAIIRTAAENVPEEAIATDVNRLHSRWED 596 Query: 194 I-----KKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALG 248 I K+ + P +++E N++++ RD +D E+++D + R ++ ++ Sbjct: 597 IVAHAKKEKSSKGAKPVTMYEEPNMLIKVVRDLFNEDFTELIVDGKRSFNTVRAYVDSMA 656 Query: 249 RPDFSSKIKLYT----GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDI 304 PD + ++ Y G F Y+I+ Q+ A R+V LPSGG++VID TEA+T ID+ Sbjct: 657 -PDLADRVVRYRAKDHGGQDAFEAYRIDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDV 715 Query: 305 NSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL 363 N+ + T GG++EET NLEAA+EI RQ+RLRDLGG+IV+DFIDM +Q V RL Sbjct: 716 NTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRL 775 Query: 364 REAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL-SLS 422 +EA+ +DR R Q+S ++ GL++M+R+RL L E+ C C+G G + + Sbjct: 776 KEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLVETFSTECECCNGRGIIIHQYPVEEAE 835 Query: 423 ILRLIEEEALKENTQEVHAIVP--VPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 + + K + P P A + + ++ + P E Sbjct: 836 DEQRSKHSGRKPKAHKKQHHDPQQHPAAVAMHKHELDDAAESSSKPKRFKKTQAPVYGTE 895 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 + + E + ++ + SEE + R ++ Sbjct: 896 SEEAARESAKTSLEDLVANVVVDERGPAQSHGGSEEHSGDHDRSKERGRGRGRRRARKRT 955 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 T + A A + + + + A Sbjct: 956 QTEVSDIEAIAYAAADNAAESDE-----------VQEFNSYVPDADTDADSGAVAKAHPG 1004 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 R + +KPR+ RR + E+ + +A +T + + +A Sbjct: 1005 AGARSKRGKKPRRATRRSKATHTVAGGEQKAPEKETAPEKTAPEKATGKTYDEAVAEFEA 1064 Query: 661 EVTEKARTADEQQAPRRERSR--RRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQP 718 K RT ++ RR + + + D A + A E Q Q+ +EER + Sbjct: 1065 SPRRKRRTRGNSRSDRRPQPQDFAVSGDHDSADTDGNASGAEAQHGQQASREERKARGRG 1124 Query: 719 -----RRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQE--------------AP 759 R +Q + R V E+A + +AE ++ Sbjct: 1125 RRRSVRPQQAKRRTTSRVPHEVKEKAQEHEHKQAGGSAEQRHEKAAGAARAGRAGGKGRG 1184 Query: 760 APRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDE 818 R P VA+ P+ + + GG P RS R + RR + Sbjct: 1185 RRRAVRQAAPKKAVAEN-PKAAKTAQGRSTQQGGSPDRSGAGQRATTGGTKVLRRGKKR 1242 >UniRef50_A8LRP5 Ribonuclease n=35 Tax=Rhodobacterales RepID=A8LRP5_DINSH Length = 1026 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 191/421 (45%), Positives = 268/421 (63%), Gaps = 3/421 (0%) Query: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 ++A E R I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMP Sbjct: 340 DVAEEIRRPRQRRERRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMP 399 Query: 132 NNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 N R GGISR+I DR +LKE + +E+P G GLIVRTAG ++ ++ D + + Sbjct: 400 NTARGGGISRKITNAVDRKKLKEIASEIEVPRGAGLIVRTAGAKRTKTEIKRDYDYLKRL 459 Query: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 WE I+ AP I++E N+I R+ RD +DI E+L++ + +A+ + L P Sbjct: 460 WEQIRDLTLKSIAPAPIYEEGNLIKRSIRDLYSRDIDEVLVEGEEGYRVAKDFMKML-MP 518 Query: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 + +KLY +PLF+ YQ+ES + F V+L SGG +VI TEAL AID+NS RAT Sbjct: 519 SHAKNVKLYNENLPLFARYQVESYLAGMFNPTVQLKSGGYLVIGVTEALVAIDVNSGRAT 578 Query: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 + G IEETA TNLEAA+E+ARQ+RLRDL GLIVIDFIDM R+ AVE RL++ ++ D Sbjct: 579 KEGSIEETALKTNLEAAEEVARQVRLRDLAGLIVIDFIDMEERRNNTAVEKRLKDKLKTD 638 Query: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 RARIQ+ IS FGLLEMSRQRL P + E + C C GTG +R + SL+LSI+R +EEE Sbjct: 639 RARIQVGRISGFGLLEMSRQRLRPGMLEITTQPCNHCHGTGLIRSDNSLALSIVRALEEE 698 Query: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 ++ +EV PV + +YL NEKR + IE R G+ + ++++ + + + + Sbjct: 699 GMRRRVREVLVKAPVNVINYLFNEKREHIALIEGRY-GLSVRLEASNELSGADFTIDKFK 757 Query: 491 K 491 Sbjct: 758 T 758 Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats. Identities = 42/92 (45%), Positives = 57/92 (61%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLI+AT EE RV +VDG ++ + D ES Q NIY K+TR+EPSL+AAFVDYG Sbjct: 3 KKMLIDATHAEETRVVVVDGTKVEEFDFESVNKRQLAGNIYLAKVTRVEPSLQAAFVDYG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKDV 93 RHGFL EI +Y+ + +++ Sbjct: 63 GNRHGFLAFSEIHPDYYQIPVADREALLAEEM 94 >UniRef50_D0WNB8 Putative S1 RNA binding domain protein n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WNB8_9ACTO Length = 940 Score = 490 bits (1260), Expect = e-136, Method: Composition-based stats. Identities = 153/415 (36%), Positives = 238/415 (57%), Gaps = 8/415 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 +KR ++ Q ++A+++ L + + N+Y G++ + PS+EAAFVD Sbjct: 327 VKREMLIREQDGLNQIAVLEDDVLVEHYVARHTQVSMVGNVYLGRVQNVLPSMEAAFVDI 386 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ E I+ L+ G V+VQ+ K+ G+KGA LT I Sbjct: 387 GKGRNAVLYAGEVNWEAAGLEGRPR---RIEQALKSGDTVVVQVTKDPIGHKGARLTAQI 443 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LAG +LVL+P+ GISR++ +R LK L + +P G+IVRTA G S + L Sbjct: 444 TLAGRHLVLVPSGAMT-GISRKLPDKERQRLKRLLREI-VPAEHGVIVRTAAEGTSEDQL 501 Query: 181 QWDLSFRLKHWEAIKKAAESRP-APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + D+ K W+ I+ A++ AP L+ E + VR RD +D + I K Sbjct: 502 RADVERLAKTWQDIQTKAKNTKGAPMLLKGEPELAVRVVRDIFNEDFQSLKIQGAKAWRT 561 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 +++A L P+ S +++ +TG +F+ ++++ Q+ AF R+V LPSGG++VID TEA+ Sbjct: 562 ISEYVAELS-PELSQRLEHWTGASDIFASHRVDEQLAKAFDRKVWLPSGGTLVIDRTEAM 620 Query: 300 TAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 T ID+N+ + T GG +EET NLEAA+EI RQLRLRD+GG+IVIDFIDM ++ Sbjct: 621 TVIDVNTGKFTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLEANREL 680 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 V RL E + +DR R Q++ ++ GL++M+R+R+ L E+ VC C G G + Sbjct: 681 VLRRLVECLGRDRTRHQVAEVTSLGLVQMTRKRVGQGLVEAFSTVCEACEGRGYI 735 >UniRef50_Q0C4E1 Ribonuclease, Rne/Rng family n=2 Tax=Hyphomonadaceae RepID=Q0C4E1_HYPNA Length = 909 Score = 488 bits (1257), Expect = e-136, Method: Composition-based stats. Identities = 177/413 (42%), Positives = 253/413 (61%), Gaps = 3/413 (0%) Query: 86 GRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-E 144 R I++V+R Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN PR GGISR+I Sbjct: 177 KRYKIQEVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTPRGGGISRKIVN 236 Query: 145 GDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAP 204 DR LK ++ L++PEG GLIVRTAG ++ ++ D + K WE I + S AP Sbjct: 237 SADRKRLKSIVSELDVPEGQGLIVRTAGAKRTKIEIKRDYDYLSKLWEQIVEKTLSSEAP 296 Query: 205 FLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIP 264 LI+ E ++ RA RD ++I E+ + + A+ +A + P + K++ + E P Sbjct: 297 ALINAEGGLVHRAMRDMFDKEIEEVWVQGDEAYREAKD-LAKIIMPSQAKKVQQWREEDP 355 Query: 265 LFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNL 324 L+ +E+Q++S + V+L SGG +VI+ TEAL AID+NS ++TR +IE+TA TNL Sbjct: 356 LYVAEAVENQLDSIYSPVVQLKSGGYLVINQTEALVAIDVNSGKSTRERNIEQTAVRTNL 415 Query: 325 EAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGL 384 EAA+E RQ+RLRDL GLIVIDFIDM ++ RAVE RL+E ++ DRAR+Q IS+FGL Sbjct: 416 EAAEEACRQMRLRDLAGLIVIDFIDMEENKNNRAVEKRLKECLKVDRARVQHGRISQFGL 475 Query: 385 LEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVP 444 +E+SRQR + +++ C C+GTG R S +L ++R IE A + + P Sbjct: 476 MEISRQRRRQGVLQATSDPCSACNGTGRRRSIPSAALQLIRAIEARAATGGLKGIGVKAP 535 Query: 445 VPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPT 497 +A Y+LN KR A+ IE R G I ++ M + + R P Sbjct: 536 TDVALYILNNKREALIEIE-RLAGFAISIHSSEDMLPGDFQIDADRDPNAKPK 587 Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats. Identities = 42/79 (53%), Positives = 56/79 (70%), Gaps = 1/79 (1%) Query: 1 MKR-MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 M R MLI+A EE RVA+V+ ++ D D E+ G+EQ + NIY K+TR+EPSL+AAFV+ Sbjct: 1 MSRLMLIDAAHPEETRVAIVNNGQVDDFDFEATGNEQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 60 YGAERHGFLPLKEIAREYF 78 YG RHGFL EI +Y+ Sbjct: 61 YGGNRHGFLAFSEIHPDYY 79 >UniRef50_C7QYR2 Ribonuclease, Rne/Rng family n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7QYR2_JONDD Length = 1018 Score = 486 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 148/418 (35%), Positives = 232/418 (55%), Gaps = 7/418 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R ++ ++A+++ L + + N+Y G++ + PS+EAAFVD Sbjct: 446 VDRSMVVREVAGRTQIAVLEDGILVEHYVSQQEQASIAGNVYLGRVQNVLPSMEAAFVDI 505 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + I++ L+ G V+VQ+ K+ G+KGA LT+ I Sbjct: 506 GKGRNAVLYAGEVNWDVHGIEGQPR---RIEEALKSGDSVLVQVTKDPIGHKGARLTSQI 562 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LAG YLV +P GISR++ +R LK L L + EG G+IVRTA G S L Sbjct: 563 TLAGRYLVYVPGGGMT-GISRKLPDTERARLKRILKEL-VDEGSGVIVRTAAEGASETEL 620 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 + D+ K W AI+K ++ AP L+ E ++ +R RD D ++ + + Sbjct: 621 RADVERLKKQWAAIEKKRKNANAPALLQGEPDLAIRVVRDIFNDDFTQLSVQGDQAWGEI 680 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 +++ L PD ++K+ +T E +F+ +I+ Q+ R+V LPSGGS+VID TEA+T Sbjct: 681 SEYVGDLA-PDLANKMSRWTSEDDIFAAARIDEQLAKGLDRKVYLPSGGSLVIDRTEAMT 739 Query: 301 AIDINSARATRGGD-IEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 ID+N+ + T G +EET NLEAA+EI RQLRLRD+GG+IVIDFIDM ++ V Sbjct: 740 VIDVNTGKFTGTGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLV 799 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 RL E + +DR + Q++ ++ GL++M+R+R+ L E+ C CSG G + Sbjct: 800 LRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLIEAFSTACDHCSGRGYTIHTD 857 >UniRef50_A6WDN2 Ribonuclease, Rne/Rng family n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WDN2_KINRD Length = 1244 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 144/407 (35%), Positives = 233/407 (57%), Gaps = 11/407 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 ++R+++ Q ++ ++ +++ L + N+Y G++ + PS+EAAF+D Sbjct: 732 VERVMVVRQQADKTQIGVLEDGILVEHYGAKLAQTTMVGNVYLGRVQNVLPSMEAAFIDV 791 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + I+ L+ G V+VQ+ K+ G+KGA LT+ + Sbjct: 792 GKGRNAVLYAGEVNWDAAGLEGQPR---RIEAALKSGDPVLVQVTKDPVGHKGARLTSQV 848 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLV +P GISR++ +R LK+ L + +PEG G+IVRTA G + E L Sbjct: 849 SLPGRYLVYVPRGSMT-GISRKLPDTERARLKKVLKQV-VPEGAGVIVRTAAEGVAEEEL 906 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 D+ WEAI+ A S+ AP L+H E ++ VR RD +D +++I + E Sbjct: 907 AADVQRLQATWEAIQAKASSKNAPVLLHGEPDLTVRVVRDVFNEDFTKLVISGDEAWETV 966 Query: 241 RQHIAALGRPDFSSKIKLYTGE----IPLFSHYQIESQIESAFQREVRLPSGGSIVIDST 296 R ++ + PD + +++ + G +F+H++I+ Q++ A R+V LPSGGS+VID T Sbjct: 967 RGYVDDVA-PDLAERLERWDGGAGGAEDVFAHHRIDEQLQKALGRKVWLPSGGSLVIDPT 1025 Query: 297 EALTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRH 355 EA+ +D+N+ + T GG +EET NLEAA+EI RQLRLRD+GG+IVIDFIDM + Sbjct: 1026 EAMHVVDVNTGKFTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESN 1085 Query: 356 QRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHH 402 + V RL E + +DR + Q++ ++ GL++M+R+R L Sbjct: 1086 RDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRTGQGLAAVLDE 1132 >UniRef50_C5CAZ2 Ribonuclease, Rne/Rng family n=1 Tax=Micrococcus luteus NCTC 2665 RepID=C5CAZ2_MICLC Length = 1091 Score = 485 bits (1249), Expect = e-135, Method: Composition-based stats. Identities = 141/420 (33%), Positives = 237/420 (56%), Gaps = 13/420 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R ++ + + +++A+++ L + + + N+Y GK+ + PS+EAAFVD Sbjct: 226 VDRKMLVRQRDQRIQIAVLEDGVLAEHFVSHTTQDSMIGNVYLGKVQNVLPSMEAAFVDI 285 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + + I++ L+ G V+VQ+ K+ G+KGA LT+ + Sbjct: 286 GRGRNAVLYAGEVNWDAAQLDGKPR---KIENALKSGDTVLVQVTKDSVGHKGARLTSQV 342 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLV +P GISR++ +R+ LK+ L LP+ G+IVRTA G S + L Sbjct: 343 SLPGRYLVYVPGGSMT-GISRKLPDVERSRLKKILKD-HLPQDAGVIVRTAAEGTSEQEL 400 Query: 181 QWDLSFRLKHWEAIKKAAESRP--APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 Q D++ WE I++ A AP L++ E ++ ++ RD +D +L+ + Sbjct: 401 QNDINRLRAQWEGIQEKASGTKVLAPELLYAEPDLTIKTVRDVFNEDFSAMLVQGEATWD 460 Query: 239 LARQHIAALGRPDFSSKIKLY----TGEIPLFSHYQIESQIESAFQREVRLPSGGSIVID 294 ++ + P ++ + L++ ++++ Q+ A +R+V LPSGGS+VID Sbjct: 461 NIEAYVTYVA-PHLLGRLHHWVPEDHDGEDLYATHRVDEQLHKALERKVYLPSGGSLVID 519 Query: 295 STEALTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPV 353 TEA+T +D+N+ + T GG++EET NLEAA+EI RQLRLRD+GG+IVIDFIDM Sbjct: 520 RTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLE 579 Query: 354 RHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 ++ V RL E + +DR + Q++ ++ GL++M+R+R+ L E C C+G G + Sbjct: 580 ANRDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLVEVFSETCEHCAGRGIL 639 >UniRef50_Q83MU7 Ribonuclease G n=2 Tax=Tropheryma whipplei RepID=Q83MU7_TROWT Length = 549 Score = 485 bits (1247), Expect = e-135, Method: Composition-based stats. Identities = 154/444 (34%), Positives = 250/444 (56%), Gaps = 20/444 (4%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 ML+ + +++V +++ L + + NIY G++ + P +EAAFVD G Sbjct: 68 MLVRGSGASDVQVGILEEGILVEYYMARGASSSLVGNIYMGRVQNVLPGMEAAFVDIGCG 127 Query: 64 RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLA 123 R+ L E E A +I++ +REG V+VQ+ K+ NKG +T +SLA Sbjct: 128 RNAVLYSGEAVWEGVKAQ-------SIENTVREGSSVLVQVTKDAVANKGPRVTGQLSLA 180 Query: 124 GSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWD 183 G YLV P + GG+SRRI +R L+++L + + + LI+RTA VG ++E L D Sbjct: 181 GRYLVYAPGS---GGVSRRIAPSERARLQKSLKA-AVEDVSSLIIRTAAVGATSEQLGND 236 Query: 184 LSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQH 243 + + AIK+ +E+ AP +I+ E ++++R RD D E++++ ++ E + Sbjct: 237 AKMLCEAYRAIKEKSENATAPSIIYSEPDLLIRLLRDTFNNDFKELIVEGAELYERVNSY 296 Query: 244 IAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAID 303 + + P+ K+ + E LF Y+I QI+ + R+V LPSGGS+V+D TEA+T ID Sbjct: 297 LQDVS-PEMLGKVSK-SSEEDLFDAYRITEQIDRSLNRKVLLPSGGSLVVDHTEAMTVID 354 Query: 304 INSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENR 362 +N+ + +E+T + NLEA DEI RQ+RLRDLGG++VIDFIDM ++ V NR Sbjct: 355 VNTGKFVGTSSSLEQTVTDNNLEAVDEIVRQIRLRDLGGIVVIDFIDMLLQENRDLVYNR 414 Query: 363 LREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRD-----NE 417 L EA+ DR+R +++ I+ GL++M+R++L +L E +C RCSG G V + Sbjct: 415 LLEALSLDRSRHKVAEITSLGLVQMTRKKLGVAL-EPVSELCDRCSGRGRVINPVPNKPR 473 Query: 418 SLSLSILRLIEEEALKENTQEVHA 441 + LR + +EA + + A Sbjct: 474 ARKKHRLRQVNKEASDAAVRIISA 497 >UniRef50_C7LYB0 Ribonuclease, Rne/Rng family n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LYB0_ACIFD Length = 457 Score = 484 bits (1245), Expect = e-135, Method: Composition-based stats. Identities = 145/421 (34%), Positives = 231/421 (54%), Gaps = 9/421 (2%) Query: 5 LINATQQEELRVALVDGQRLYDLDIESPG--HEQKKANIYKGKITRIEPSLEAAFVDYGA 62 + + VA+++G+ L + NIY G++ + P +EAAF+D G Sbjct: 39 MAVHVHGDVTHVAILEGRSLIQHAVSRASDTETSVVGNIYLGRVVNVLPGMEAAFIDIGT 98 Query: 63 ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISL 122 ++ L ++ E G I+ +LR Q ++ Q K +KGA LT +SL Sbjct: 99 AKNAVLYRGDVRYEREDLEGLGDGA-RIEQLLRPKQVIVCQAVKNPIAHKGARLTQEVSL 157 Query: 123 AGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQW 182 G + VL+P R+ GIS+R+ +R L+ + L +PEG G+I+RTA G + L+ Sbjct: 158 PGRFAVLVP-GQRSVGISKRLPDQERRRLRGLVEDL-VPEGFGVILRTAAEGATRAELER 215 Query: 183 DLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQ 242 D++ + W+ I + A + AP L++QE VR R+ Q+ + ID+ + E + Sbjct: 216 DITQLVGMWQRIDELARTEHAPALLYQEPPAAVRVIREEFSQEFRSVAIDDRALYEDVAR 275 Query: 243 HIAALGRPDFSSKIKLYTGE---IPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 ++ + P+ + +++ Y E +P+F Y ++ Q+ A +R V LPSGGS+VID EAL Sbjct: 276 YVQTIS-PELADRVEYYDAEAEGVPIFQRYHVQHQLAKALERTVWLPSGGSLVIDRAEAL 334 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+N+AR +EET NLEA +EIARQLRLRD+GG+IVID +DM +++ V Sbjct: 335 TVIDVNTARNVGAVSLEETIHRNNLEAVEEIARQLRLRDIGGIIVIDVVDMVDPQNRDDV 394 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 R A+ +D+ R + +S GL++M+RQR+S L ES CP C G G V D + + Sbjct: 395 MRAFRAALARDKTRTHVYDMSPLGLIQMTRQRISEGLVESLSSTCPTCHGQGYVLDEDVV 454 Query: 420 S 420 + Sbjct: 455 A 455 >UniRef50_Q5WES2 Ribonuclease G n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WES2_BACSK Length = 497 Score = 482 bits (1241), Expect = e-134, Method: Composition-based stats. Identities = 144/507 (28%), Positives = 245/507 (48%), Gaps = 16/507 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M++ ++ + L++ + + ES Q +++ GK+ R+ P +EAAFVD Sbjct: 1 MEQSIVITKGINKREAVLLENNEVVEWFFESNDRPQMVGSVFLGKVERVLPGMEAAFVDI 60 Query: 61 GAERHGFLPLKEIAREYF-PANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G ++GFL E+ + P++ + +I + G + VQ+ KE KG L+ Sbjct: 61 GTGKNGFLHRDELLAFHLDPSDLTEKQTKSISQFVSPGDTIAVQVTKEGTNEKGPRLSGV 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAE 178 +S+ G Y+V MP +SRRIE + R L AL + +L G IVRTA E Sbjct: 121 VSIPGKYVVYMPEGAYV-AVSRRIESEHVRASLHTALEN-KLQHNEGAIVRTAAANAPLE 178 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 ++ DL F W+ + E AP LI++ + ++ YL + + E+++D+ Sbjct: 179 EVERDLVFLRTLWQKTLRHQEQ--APALIYRAATLVETLLLGYLNEQVTEVVVDDIDDYR 236 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 L +Q + D K+KLY + F +I +Q+ A +R + L +G +VID TEA Sbjct: 237 LMKQLVQT----DDKDKVKLYAHKGSSFQSARISAQLAKAQKRRIWLKNGAFLVIDETEA 292 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 +T ID+N+ + T ET N AA E A+Q+RLR+ G+IVIDFIDM + A Sbjct: 293 MTVIDVNTGKFTGKFAQSETVLAVNKLAAVEAAKQIRLRNCSGIIVIDFIDMQSDSDRLA 352 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 V+ + A+++DR + + ++ GLLEM+R++ S+ ++ C C+GTG V Sbjct: 353 VQQTMERALKKDRVKTSVRGFTKLGLLEMTRKKTRLSMAKTVTVECKACAGTGAVLAGHG 412 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 + + RLI EE + + V + S L+ +E+ GV +V ++ Sbjct: 413 HAFMLERLILEE----QAEALVVAVTAELRSLLVGVGDLYKERLES-LAGVTLFLVTDNS 467 Query: 479 M-ETPHYHVLRVRKGEETPTLSYMLPK 504 + + Y + EE + + Sbjct: 468 LPQAKPYSIDFAGSYEEAQKRFDTMAQ 494 >UniRef50_D2LS23 Ribonuclease, Rne/Rng family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LS23_BACS4 Length = 456 Score = 481 bits (1238), Expect = e-134, Method: Composition-based stats. Identities = 139/463 (30%), Positives = 232/463 (50%), Gaps = 15/463 (3%) Query: 41 IYKGKITRIEPSLEAAFVDYGAERHGFLPLKE-IAREYFPANYSAH-GRPNIKDVLREGQ 98 ++ G++ I P +EAAFV+ GA+++GFL E IA + + +P I +L+EGQ Sbjct: 1 MFIGRVEDIVPGMEAAFVNIGADKNGFLYRNELIAYDTLKDDKEPDVKQPTIASMLKEGQ 60 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASL 158 +IVQ+ KE G KG LT ISL G Y+V +P +S+++ ++R +E Sbjct: 61 SIIVQVTKEAVGAKGVRLTEKISLPGKYIVYLPYGNYV-AVSKKMNEENRKGWREKAREW 119 Query: 159 ELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAF 218 + + G+I+RT S E + + + + + + AE P ++ +S++I R Sbjct: 120 -IEDREGIIIRTNAEDASHEEIYHEFTLLRHQHQQMLQQAEKVNVPNVLLNQSSLISRVQ 178 Query: 219 RDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESA 278 RDYL EI++D+ + E L I LY + +FS+Y IE +E A Sbjct: 179 RDYLTNKNSEIVVDHFESYEQL------LNSSLEGCNIHLYQEKEDIFSYYDIEKHLEKA 232 Query: 279 FQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRD 338 +V L SGG ++I+ TEALT ID+N+ + T ++ +T TN+EAA +A+QLRLR+ Sbjct: 233 LHEKVWLKSGGFLIIEKTEALTVIDVNTGKFTGKHNLRDTVVKTNIEAAYAVAQQLRLRN 292 Query: 339 LGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGE 398 +GG+I+IDFIDM Q++V L+EA + DR ++ + FGL+EM+R++ L + Sbjct: 293 IGGIILIDFIDMKVESDQKSVLKALKEATKNDRTLTNVAGFTNFGLVEMTRKKARKPLHD 352 Query: 399 SSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSA 458 C C GTG V +S + R + + + V + LL Sbjct: 353 IMMESCSVCKGTGQVLSLKSKIAHLEREVFALRYIDQ-DAILVEVDSAVYESLLQNNNDL 411 Query: 459 VNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYM 501 + ++E + ++ E H +R+ + S+ Sbjct: 412 LTSMEQVVNKTIYLVNG----ENGHLPTIRLIGDYDEIKASWE 450 >UniRef50_C8NQN5 Ribonuclease E n=5 Tax=Corynebacterium RepID=C8NQN5_COREF Length = 1148 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 193/731 (26%), Positives = 317/731 (43%), Gaps = 49/731 (6%) Query: 2 KRMLINATQQEE-----LRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAA 56 +RM++ Q+ + +V +++ L + + S NIY G++ + PS+EAA Sbjct: 352 RRMIVRERQRTDGTGLVTQVGVLEDDLLVEQFVTSDSQSSMVGNIYLGRVQNVLPSMEAA 411 Query: 57 FVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL 116 F+D G R+G L E+ + I+ L+ GQ+V+VQ+ K+ G+KGA L Sbjct: 412 FIDIGKGRNGVLYAGEVDWKAAGLGGRGR---RIEQALKSGQKVLVQVTKDPVGHKGARL 468 Query: 117 TTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKS 176 TT ISLAG YLV +P R+ GISR++ G +R LKE L + P+G G I+RTA G S Sbjct: 469 TTQISLAGRYLVYVPGG-RSAGISRKLPGPERKRLKEILGRVVPPQG-GTIIRTAAEGVS 526 Query: 177 AEALQWDLSFRLKHWEAIKKAAESRPA-----PFLIHQESNVIVRAFRDYLRQDIGEILI 231 E + D++ WE I++ + P +++E +++V+ RD +D +++ Sbjct: 527 EENIAADVNRLHTLWEQIQERTKQEKKSRNTRPVTMYEEPDMLVKVIRDLFNEDFTSLIV 586 Query: 232 DNPKVLELARQHIAALGRPDFSSKIKLYT----GEIPLFSHYQIESQIESAFQREVRLPS 287 D + R +I ++ PD S+++ + F + + +Q+E A R+V LPS Sbjct: 587 DGDRAWNTVRAYIQSVA-PDLVSRVEHFDRADYDGKDAFEAFGLNTQLEEAMSRKVNLPS 645 Query: 288 GGSIVIDSTEALTAIDINSARATRGG--DIEETAFNTNLEAADEIARQLRLRDLGGLIVI 345 GGS++ID TEA+T IDIN+ R G ++EET N+EAA+EI RQLRLRD+GG+IVI Sbjct: 646 GGSLIIDKTEAMTVIDINTGRYVGKGVGNLEETVTLNNIEAAEEIVRQLRLRDIGGMIVI 705 Query: 346 DFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCP 405 DFIDM ++ V RL EA+ DR R Q+S ++ GL++M+R+R+ L E+ C Sbjct: 706 DFIDMVLPENRDLVLRRLNEALENDRTRHQVSEVTSLGLVQMTRKRIGAGLLETFSSECE 765 Query: 406 RCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETR 465 C+G G V + + ++ +E +A + + N++ + R Sbjct: 766 HCAGRGLVIHPDPVD-NVDERVEAKAEERARRH-------------KNQQEDSRPQQPVR 811 Query: 466 QDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPE 525 ++V + + K E S ++ E+ + A+ PE Sbjct: 812 DPARHPMVVAMQDLVED--EDHDLDKEFEDLAASVIITDDAEDTADTAGTVDTADDTEPE 869 Query: 526 QPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGG 585 A + + P P P A A A+ Sbjct: 870 ITADEVISTVEPEEGPRRRARRRRGRQQETPETPVEPEATGDTTADDIAAIAAAAVDIAD 929 Query: 586 EETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQ 645 E A + RR TR + E+ ++ Sbjct: 930 AEDPDEPSGANYVSDAAGAATSYEQALAEFEASPRRRRATRGNSRSDHAPKPEDFKSEP- 988 Query: 646 AQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQ 705 +R++ E + ++ PRR R + E E + Sbjct: 989 ----------ARREVEPIPVEEIGEAEEKPRRRSRGRGRSQRPAPVVETTVETAVEDIPE 1038 Query: 706 ETEQEERVRPV 716 ET + R V Sbjct: 1039 ETPRRNRPSEV 1049 >UniRef50_C3PI06 Ribonuclease E n=3 Tax=Corynebacterium RepID=C3PI06_CORA7 Length = 1062 Score = 480 bits (1236), Expect = e-133, Method: Composition-based stats. Identities = 190/716 (26%), Positives = 313/716 (43%), Gaps = 48/716 (6%) Query: 14 LRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEI 73 +V +++ L + + + H + NIY G++ + PS+EAAFVD G R+G L +I Sbjct: 368 TQVGVLEDDLLVEHFVTTETHPSQIGNIYLGRVQNVLPSMEAAFVDIGQGRNGVLYAGDI 427 Query: 74 AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 + +++ L+ G +V+VQ+ K+ G+KGA LTT ISLAG +LV +P Sbjct: 428 DWRALGIGGRSR---KVENALKSGDQVLVQVAKDPIGHKGARLTTQISLAGRFLVYVPGG 484 Query: 134 PRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEA 193 R+ GISR++ +R LK L + +P G I+RTA S E + D++ WE Sbjct: 485 -RSAGISRKLPAPERKRLKGILERV-IPGDGGAIIRTAAENVSEEDIASDVNRLHSLWED 542 Query: 194 IKKAAESRPA-----PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALG 248 I A A P +++E +++++ RD +D +++D + ++ ++ Sbjct: 543 ISARAAHEKATKGAKPVTLYEEPDLLIKVVRDLFNEDFSTLVVDGKRSYNTVSAYVDSMA 602 Query: 249 RPDFSSKIKLYT----GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDI 304 D + ++ Y FS Y+I+ Q++ A R+V LPSGG++VID TEA+T ID+ Sbjct: 603 H-DLADRVVRYDAREHDGEDAFSAYRIDEQLQKALGRKVWLPSGGTLVIDRTEAMTVIDV 661 Query: 305 NSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL 363 N+ + T GG++EET NLEAA+EI RQ+RLRD+GG+IV+DFIDM +Q V RL Sbjct: 662 NTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLPENQDLVLRRL 721 Query: 364 REAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSI 423 +EA+ +DR R Q+S ++ GL++M+R+R+ L E+ C C G G + + Sbjct: 722 KEALGRDRTRHQVSEVTSLGLVQMTRKRVGTGLIETFSTECEACHGRGIIIHE----YPV 777 Query: 424 LRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPH 483 EEE K + E+R+ + VR M Sbjct: 778 DEDPEEENSKPQRRGRK-------------ERRAPQRDPKKHPAAVR--------MHRDD 816 Query: 484 YHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTP 543 + S EE +A + E + P+ ++ + + Sbjct: 817 EDAAAEHETATEKETSRDDDSSLEELVANVVVVDEDEPETPDSASIGYAVAESLDAKRSK 876 Query: 544 AEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPE 603 +P + Q S A + + + + Sbjct: 877 PKPKSKAKRSRKPRRATRTFREPQREETSEGSRAKHGKRDEHADAEKASPQRSEQTYEEA 936 Query: 604 RQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVT 663 + + PR+ R N R D R +R + + + + Q E + R+ AE Sbjct: 937 VEAFEKSPRRKRRTRGNSRSDIRPKREDFAQDETSAKDA--QLATSKKEAKAERKGAEPG 994 Query: 664 EKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPR 719 E + R R RRR K Q A N EQ + +E + + Sbjct: 995 E-----NTSVRATRSRGRRRVVRKMAQSQSTPASNDREQGSEAQRRESSAQTTASK 1045 >UniRef50_C5CEM0 Ribonuclease, Rne/Rng family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEM0_KOSOT Length = 481 Score = 478 bits (1230), Expect = e-133, Method: Composition-based stats. Identities = 146/466 (31%), Positives = 245/466 (52%), Gaps = 19/466 (4%) Query: 5 LINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAER 64 ++ ++ ++E+R+A++D ++ ++ E +E NIY GKI + PSLEAAFV+ G + Sbjct: 12 IVFSSLEDEVRIAILDEGKIQEVFFEEMDNESYMGNIYLGKIENVVPSLEAAFVNIGIGK 71 Query: 65 HGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAG 124 +GFL K+ L +G++V+VQ+ K+ G+KG LT IS+ G Sbjct: 72 NGFLRFKDTRNN---------------QKLEKGKKVLVQVKKDPIGSKGPQLTLKISIPG 116 Query: 125 SYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDL 184 LV MP + GIS++I E ++A + G+I RTA G + L+ +L Sbjct: 117 RCLVYMPFSKHV-GISKKITDQAERERLISIAKGIIENDEGIIFRTAANGVGEDTLREEL 175 Query: 185 SFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHI 244 W+ I + P ++++E +++ R+ L +D+ EI++D+ + I Sbjct: 176 ENLRTIWKKINEKFRRARKPQILYEEPSLVEYILRERLTEDVKEIVVDSEDLWHDVVAGI 235 Query: 245 AALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDI 304 + + F ++ E F H I +++ + R V LP+GG+I ID TEA+T ID+ Sbjct: 236 SKF-KSGFKPIVRYV--EEDAFLHEGIYEKMKVLYTRVVPLPNGGNIFIDKTEAMTVIDV 292 Query: 305 NSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLR 364 NSA T G D+ E + NTNLEAA EIARQLRLR++GG+IVIDFIDM ++ V + L Sbjct: 293 NSASNTHGSDVSEMSLNTNLEAAVEIARQLRLRNIGGIIVIDFIDMKSEADRKKVISLLS 352 Query: 365 EAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSIL 424 E +++D+A I +R GLLEM+R+R + ++ + CP C GTG + + ++ Sbjct: 353 EELKKDKAHSLILGFTRLGLLEMTRKRSTATINSRIYSTCPICRGTGQIESPKITYQRLV 412 Query: 425 RLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVR 470 ++ + + V ++ L E + ++ R+ V Sbjct: 413 SDLQRLFKDKKIKSATVQVYQNLSGILTPEVQKQLSKQFKREIKVS 458 >UniRef50_B8DVT8 Ribonuclease G n=7 Tax=Bifidobacterium RepID=B8DVT8_BIFA0 Length = 1028 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 141/425 (33%), Positives = 237/425 (55%), Gaps = 14/425 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R+++ + ++++++ L + + NIY G++ + PS+EAAFVD Sbjct: 476 VDRLMVVRERGRHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDI 535 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+G L E+ + I+ + G V+VQ+ K+ G+KGA LT+ + Sbjct: 536 GQARNGVLYAGEVNWDATRLEGQPR---RIELAFKSGDPVLVQVTKDPIGHKGARLTSQV 592 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LAG +LVL+P+ G+SR++ +R LK ++ + P+ MG+I+RTA G S EA+ Sbjct: 593 TLAGRFLVLVPSGGMT-GVSRKLSDRERNRLKSIVSKIA-PKDMGVIIRTAAEGASEEAI 650 Query: 181 QWDLSFRLKHWEAIKKA---AESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 DL W I++ P L+ E +V +R RD D +++++ V Sbjct: 651 AKDLEGLTNQWAEIQRKREEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFNKMIVEGDGVY 710 Query: 238 ELARQHIAALGRPDFSSKIKLYT----GEIPLFSHYQIESQIESAFQREVRLPSGGSIVI 293 +++ + PD +K++ + G +F +QI+SQ+ +R+V LPSGGSIVI Sbjct: 711 HRIEEYLDHMA-PDLHNKLERWDPEEHGGKDVFDRWQIDSQLRKGMERQVYLPSGGSIVI 769 Query: 294 DSTEALTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTP 352 D TEA+T ID+N+ R G +EET NLEA++EIARQLRLRD+GG+++ID++DM Sbjct: 770 DRTEAMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVM 829 Query: 353 VRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGT 412 ++ V RL E + +DR + Q++ ++ GL++M+R+R+ L E+ CP C G G Sbjct: 830 PANRDLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPECKGRGF 889 Query: 413 VRDNE 417 + +E Sbjct: 890 IVHDE 894 >UniRef50_Q8DL99 Ribonuclease E n=3 Tax=Chroococcales RepID=Q8DL99_THEEB Length = 668 Score = 476 bits (1225), Expect = e-132, Method: Composition-based stats. Identities = 149/416 (35%), Positives = 222/416 (53%), Gaps = 14/416 (3%) Query: 1 MKRMLINATQQEELRVALVD-GQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 M + +I A EE R+A V ++ +L + + H + +IY G + + P ++AAFV+ Sbjct: 1 MPKQIIIA---EEHRLAAVFAEDQIQELIVATGTH--QVGDIYLGVVENVLPGIDAAFVN 55 Query: 60 YGA-ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 G R+GF+ + ++ A I ++L Q+V+VQ+ KE G KG LT Sbjct: 56 LGDASRNGFIHVSDLGPLRLKRTAGA-----ITELLAPQQKVLVQVMKEPTGTKGPRLTG 110 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAE 178 ISL G YLVLMP R +SRRI + AL L P GMGL+VRT G S E Sbjct: 111 NISLPGRYLVLMPYG-RGVNLSRRITNEAERHRLRALGILVKPAGMGLLVRTEAEGVSEE 169 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 A+ DL + WE I++ A + P L+ ++ + I + RD D+ I++D P ++ Sbjct: 170 AILEDLELLQRQWETIQQQAAASRPPQLLGRDDDFIQKVLRDVYSSDVNRIVVDTPDGVK 229 Query: 239 LARQHIAALGRPDFSS-KIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 +QH+ I + IP+ ++++ + I A + V LPSGG I+I TE Sbjct: 230 RVKQHLKNWNVNRPVGVLIDYHQEPIPILDYFRVNAAIREALKPRVDLPSGGYIIIQPTE 289 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 ALT ID+NS T ET TN EAA EIARQLRLR++ G+I++DFIDM R Q Sbjct: 290 ALTVIDVNSGSFTSSATSRETVLWTNCEAATEIARQLRLRNIAGVIIVDFIDMDSRRDQL 349 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 + +A+R D+AR QI+ +S GL+E++R+R ++ E C C G G + Sbjct: 350 LLLEHFSKALRADKARPQIAQLSELGLVELTRKRQGQNIYELFGRPCSACGGLGHL 405 >UniRef50_B1I4P9 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I4P9_DESAP Length = 416 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 160/415 (38%), Positives = 244/415 (58%), Gaps = 8/415 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 +KR +I +T+ RVAL++ + ++ IE +I+KG + + P +EAAFV+ Sbjct: 2 LKREIIVSTRDNATRVALLENRVPMEVYIEPDEEICLVGSIFKGVVENVLPGIEAAFVNV 61 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +R+ FL + ++ + A+ SA G I+D+L GQEVIVQ+ K+ GNKG +T + Sbjct: 62 GLDRNAFLYVNDVLPQSARADQSAAG---IRDLLHPGQEVIVQVAKDPLGNKGPRVTMRV 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 +L G Y VLMP GISRRIE + +R L+E + PEGMG IVRTA G +AE Sbjct: 119 NLPGHYTVLMPTVNHV-GISRRIEDESERERLREVVHRAR-PEGMGAIVRTAARGIAAEV 176 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 L D+ K W I+K AP L+++E ++ R RD ++I +++D+ Sbjct: 177 LADDIRELEKLWRDIQKREAGAAAPSLLYRECGLLPRIIRDLFTEEIERLVLDSFTSYAR 236 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + + + P S++ + + +F Y + +I A QR+ L GG ++ D EAL Sbjct: 237 SLTILDTVN-PQLKSRV-FWEDKPDIFEAYNVNQEINKALQRKTWLRCGGYLIFDQAEAL 294 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+N+ R T D+E+T + TNLEAA EIARQLRLR+LGG+I+IDFIDM+ H+ V Sbjct: 295 TVIDVNTGRFTGRVDLEDTVYKTNLEAAVEIARQLRLRNLGGIIIIDFIDMSHEEHRNRV 354 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVR 414 L E +++DR R I ++R GL+E++R+++ PSL E CP+C GTG ++ Sbjct: 355 LEVLGEEIKKDRRRTHIMGLTRLGLVELTRKKVHPSLAELLLTNCPQCGGTGKIQ 409 >UniRef50_B1VGM2 Ribonuclease E n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VGM2_CORU7 Length = 1190 Score = 476 bits (1224), Expect = e-132, Method: Composition-based stats. Identities = 184/795 (23%), Positives = 331/795 (41%), Gaps = 38/795 (4%) Query: 13 ELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKE 72 +V +V+ +L + + S + NIY G++ + S+EAAF+D G R+ L E Sbjct: 395 TTQVGVVEDGQLVEHFVTSDTQQSMVGNIYLGRVQNVLASMEAAFIDIGTGRNAVLYASE 454 Query: 73 IAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPN 132 + + + I LR G +V+VQ+ K+ G+KGA LT IS AG YLV P Sbjct: 455 VNWH---SPHLHSKSRRIDQALRSGDQVMVQVIKDPVGHKGARLTNRISFAGRYLVYFPG 511 Query: 133 NPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWE 192 GISR++ +R LKE L + +P G I+RTA + E ++ D++ K W Sbjct: 512 GT-TAGISRKLPEAERKRLKEILQRV-VPGQGGAIIRTAAENVAEELIEEDVNRLHKQWL 569 Query: 193 AIKK-AAESRP----APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAAL 247 I+K A+ R P +++E N+++ RD +D E+L++ K + R ++ + Sbjct: 570 NIEKTEAKERKSKGAKPVTLYEEPNMLITVIRDLFNEDFSELLVEGDKSWRMVRDYMGRM 629 Query: 248 GRPDFSSKIKLYT----GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAID 303 P+ ++ + + +F+ ++++ Q+ A R+V LPSGG +VID TEA+T ID Sbjct: 630 A-PELMDRVHKWHPEQHADEDVFAAHRLDDQLAKALCRKVWLPSGGHLVIDHTEAMTVID 688 Query: 304 INSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENR 362 +N+ GG++EET NLEAA+EI RQ+RLRD+GG+IV+DFIDM +Q V R Sbjct: 689 VNTGSFVGSGGNLEETVTENNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLEENQDLVLRR 748 Query: 363 LREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLS 422 L E + +DR ++S ++ GL++++R+RL L E+ C C G G + + + Sbjct: 749 LIEYLGRDRTHHKVSEVTSLGLVQITRKRLGAGLLETFSTTCECCDGRGVIVHPDPVE-- 806 Query: 423 ILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETP 482 ++ + + + + ++++ E RQ G DQ Sbjct: 807 -----QDFSEEPERRRRSSRGNGRGRDERGSKEQRNGQGTEQRQGGRG------DQGSKN 855 Query: 483 HYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPT 542 H + + + T + A E+ R Q + D Sbjct: 856 HGRDEQRDQRGKNATRHEDKGSKSKVANGKGREDAQDHRNSEGQERRSGKQRQDSQAGSE 915 Query: 543 PAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKP 602 A + + Q S A G E K + + +A Sbjct: 916 SAADLGGEQKQETRTSRRGGRRSVQRRTSSSVKDATARTEQGSAEKKQSADRSDEASQSG 975 Query: 603 ERQQDRRKPRQN------NRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRES 656 + + RR R+ +++ + + + + + +R +R Q+ + ES Sbjct: 976 QERAPRRVVRRIVRRTAPSQQRGGAAQRRSAANADAPELKISSREDRGSDQRGEQQKSES 1035 Query: 657 RQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPV 716 + R + A R+ +R+ D + ++ + ++ Q + + R Sbjct: 1036 GSRGARRRGRRVVRSRPAVRQSDTRQAGGDTLRGEESSGQQRSGQK--QGSAGDRRSSAT 1093 Query: 717 QPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQT 776 + + + +E +P + P P P A+ Sbjct: 1094 RRSGTRGAGKYGATTYEEAVKEFENSPRRRRRTRGNSVSDRRPQPED-FGAQPEANQAKE 1152 Query: 777 APEQQEENNADNRDN 791 P+++ N Sbjct: 1153 EPKRESRNAGKTEQP 1167 Score = 44.7 bits (104), Expect = 0.017, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 73/214 (34%), Gaps = 8/214 (3%) Query: 606 QDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEK 665 +R Q N + +R+ R ++ + R+E R R + + + + A + Sbjct: 828 DERGSKEQRNGQGTEQRQGGRGDQGSKNHGRDEQRDQRGKNATRHEDKGSKSKVANGKGR 887 Query: 666 ARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQL 725 D + + +ER + QA E+ A EQ + R RR + Sbjct: 888 EDAQDHRNSEGQERRSGKQRQDSQAGSESAADLGGEQKQETRTSRRGGRRSVQRRTSSSV 947 Query: 726 NQ-KVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEEN 784 R EQ AE+ A +E + QE R V +Q + Sbjct: 948 KDATARTEQGSAEKKQSADRSDEASQS---GQERAPRRVVRRIVRRTAPSQQRGGAAQRR 1004 Query: 785 NADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDE 818 +A N D + SR R S QR + + E Sbjct: 1005 SAANADAPELKISSRED----RGSDQRGEQQKSE 1034 >UniRef50_C4LJU7 Ribonuclease E n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LJU7_CORK4 Length = 1258 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 184/833 (22%), Positives = 340/833 (40%), Gaps = 58/833 (6%) Query: 2 KRMLINAT-----QQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAA 56 +RM++ + + +VA+++ +L + + S NIY G++ + S+EAA Sbjct: 416 RRMIVRDSVRSDGSGKVTQVAIMEDDQLVEHFVTSERTRTLVGNIYLGRVQNVLASMEAA 475 Query: 57 FVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL 116 FVD G +R+G + +I + + I+ L+ G ++VQ+ K+ G+KG L Sbjct: 476 FVDIGTDRNGVIYSGDIDWRHTRHT---GRQRKIEKALKPGDPILVQVTKDSVGHKGPRL 532 Query: 117 TTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKS 176 T+ ISLAG YLV +P RA G+SR++ +R LK+A++ + LP+ G I+RTA G Sbjct: 533 TSHISLAGRYLVYVPEG-RAHGVSRKLPEPERKRLKKAVSGI-LPDEGGAIIRTAAEGVD 590 Query: 177 AEALQWDLSFRLKHWEAIKKAAESRP------------------------------APFL 206 E + D+ + W+ I + A+ P Sbjct: 591 TEDIARDVRRQQNVWDTILEKADELRTLPGSQASSGKGSGKKNSKGGKKGSKPHFDGPQT 650 Query: 207 IHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYT----GE 262 +H+E N++V+ RD +D E+++D + + +I + PD K+ Y Sbjct: 651 LHEEPNLLVKVVRDLFNEDFDELIVDGGRSWSMVSSYIHRIA-PDLEEKLSKYERQDHDG 709 Query: 263 IPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRG-GDIEETAFN 321 F H+ I+ Q++ A R V LPSGG++VI+ TEA+T ID+N+ R T G +EET Sbjct: 710 QDAFGHWGIDKQLKQALDRVVFLPSGGTLVIEKTEAMTVIDVNTGRFTGSSGSLEETVTR 769 Query: 322 TNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISR 381 NLEAADEI RQ+RLRD+GG+IV+DFIDM +Q V RL EA+ +DR R Q+ ++ Sbjct: 770 NNLEAADEIVRQMRLRDIGGMIVVDFIDMVLEENQELVLRRLSEALAKDRTRHQLGEVTS 829 Query: 382 FGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHA 441 GL++++R+RL L E+ C C G G + ++ + +L +++ +++ + Sbjct: 830 LGLVQITRKRLGKGLVETFSTPCSECHGRGFIVHDDPI---LLSSTDDDESDDDSAALQD 886 Query: 442 IVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYM 501 V + Y ++ + + + + + Sbjct: 887 NVDNDLPEYSFDDDTDDHADDTSSDSTSGDSKNDRSKGGRSGGGRSKKDHAGKGGSGKQG 946 Query: 502 LPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPAT 561 + ++ + E LA PD P A + A A+ Sbjct: 947 HSEKQGDSEEATTRRRSIEEIAAAAVILADDEDPDEPSGADYLPAAQDSRSGGDDADNAS 1006 Query: 562 PAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNE 621 G G + Q + +A + N R+E Sbjct: 1007 AGDNGSSGDKD---GRPRRRRRRKTTRSSRSQHEEQVKADHTESDGAKTNPPENATKRDE 1063 Query: 622 RRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPR----- 676 + + ++ R ++Q ++ A R + Q + +++ + Sbjct: 1064 ETAHHPDADADKGSGDKTTRGKKQRGRRHATRRSASQAKKAASSSQSKSRNEDDSHAKDE 1123 Query: 677 -RERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSV 735 + + R + + ++ + + ++S + + ++Q + + R Sbjct: 1124 HQTKDASRTKSRSKDSGDSSSRSRGKKSSSADTSSQHEETYEEAQRQFDRSPRRRRATRG 1183 Query: 736 AEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADN 788 + V P E + + K A+ E ++ D+ Sbjct: 1184 NSRSDVPPEKENYSDGKTGKTGRGSSNASDQKQSDKSSAENRSEHADKRENDS 1236 >UniRef50_A8GXM7 Ribonuclease E n=15 Tax=cellular organisms RepID=A8GXM7_RICB8 Length = 693 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 176/454 (38%), Positives = 265/454 (58%), Gaps = 5/454 (1%) Query: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 EI + N + + ++DV+R+ Q ++VQ+ KEERGNK AA TT++SLAG Y VLMP Sbjct: 151 EIIQSDKEENIPQYKQYKVQDVIRKNQILLVQVTKEERGNKCAAFTTYVSLAGKYCVLMP 210 Query: 132 NNPRAGGISRRIEG-DDRTELKEALASLELPEG--MGLIVRTAGVGKSAEALQWDLSFRL 188 N GISR+I D+R LK L + + +I+RTAG G S L+ D S+ Sbjct: 211 NKAAQNGISRKISNGDERKRLKNILNKVVNGDKSPYSVIIRTAGRGCSTLDLKKDYSYLS 270 Query: 189 KHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALG 248 + W I+K+ PAP IH+E ++I + RD ++ E++I + E A + + L Sbjct: 271 RLWNKIRKSTVKFPAPCFIHEEDSIIRKTIRDMCDHNVKEVIIYGQEAYEDAAKFMQDL- 329 Query: 249 RPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSAR 308 P +K+K + + P+F+ +Q+E Q+ +Q V LPSGG IVI+ TEAL +ID+NS R Sbjct: 330 LPSEMTKLKEHKSKTPIFTKFQVEEQLIKLYQPVVTLPSGGYIVINPTEALISIDVNSGR 389 Query: 309 ATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVR 368 +T +IEETA TNLEAA EIARQ++LRDL GLIV+DFIDM ++++ +E +E + Sbjct: 390 STSEKNIEETALKTNLEAAKEIARQVKLRDLSGLIVVDFIDMDETKNRKIIERSFKEFLS 449 Query: 369 QDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIE 428 +DRARIQ +IS+FGLLE SRQRL S E++ +C C+G G VR +ES ++ ILR IE Sbjct: 450 RDRARIQTGNISQFGLLEFSRQRLRFSFLETNSSICSHCNGKGVVRADESNAMLILRTIE 509 Query: 429 EEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLR 488 E ++ ++ V YLLN KR + IE + + +R + + Y + + Sbjct: 510 NEIFEDRIDIINVFANVSSVIYLLNNKRQEIKFIEEKYN-IRLNFYSDPNATSDSYSIEK 568 Query: 489 VRKGEETPTLSYMLPKLHEEAMALPSEEEFAERK 522 V+ ++ + + A +EEE + + Sbjct: 569 VKLLKKNNNNLNAGKPVIQNHSADYTEEEPKKEQ 602 Score = 89.8 bits (221), Expect = 5e-16, Method: Composition-based stats. Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 1/88 (1%) Query: 2 KRMLINATQQEELRVALV-DGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 K+++I+A E RV L+ + D++ ++ +Q K NIY K+TRIEPSL+A F++Y Sbjct: 3 KKIIIDANFSNETRVVLLGQSNNIEDIEFQTTRKQQNKGNIYLAKVTRIEPSLQAVFIEY 62 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRP 88 G ++ GFLP EI Y+ S P Sbjct: 63 GMDKSGFLPFSEIHPNYYNLPASEKNFP 90 >UniRef50_C4K6Y9 RNase G (Ribonuclease G) n=2 Tax=Enterobacteriaceae RepID=C4K6Y9_HAMD5 Length = 495 Score = 474 bits (1220), Expect = e-132, Method: Composition-based stats. Identities = 157/494 (31%), Positives = 256/494 (51%), Gaps = 14/494 (2%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQ--KKANIYKGKITRIEPSLEAAFVDY 60 +LIN T E RVA +D L ++ IE + NIY+G++TRI P ++AAF+D Sbjct: 4 ELLINVTPFE-TRVAYIDDNILQEIYIERENENKTGLVGNIYQGRVTRILPGMQAAFIDI 62 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 E+ FL +I P N I +++ GQ V+VQ+ K+ G+KGA LTT I Sbjct: 63 QLEKAAFLHASDILSLKPPENEDQRQD--IAELIHLGQNVMVQVIKDPLGSKGARLTTHI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LA YLVL IS+R+E + E + + S + G IVRTA G +AL Sbjct: 121 TLASRYLVLTMTPE--VAISQRLENEQERERLKNIVSSYCDKKNGFIVRTAAEGMDEKAL 178 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDY-LRQDIGEILIDNPKVLEL 239 D +F W I + +++ E + R RD+ + + + ID+ + Sbjct: 179 ASDAAFLKSLWANIIAGKTQNGSKNVLYTELPLKKRILRDFTVVASLDRVRIDDQQTYNS 238 Query: 240 ARQHIAALGRPDFSSKIKLY----TGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDS 295 + P+ K++ Y LFS Y +E++I+S ++V L SGG ++I+ Sbjct: 239 LKAFSEEY-IPEMLPKLEHYPVEKKNNQTLFSFYHVENEIQSLLNKKVPLKSGGCLIIEQ 297 Query: 296 TEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRH 355 TEA+T IDIN+A ++EET F+TN+EA IARQLRLR+LGG+I+IDFIDM H Sbjct: 298 TEAMTTIDINTAGFVGYKNLEETIFDTNIEATRVIARQLRLRNLGGIIIIDFIDMKNEEH 357 Query: 356 QRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRD 415 ++ V + L++A+ QDR + + S GL+E++R+R + ++ + C C G G + Sbjct: 358 KKNVLSSLKKALNQDRVKTTVGEFSPLGLIEITRKRTTENIEKILCDRCQTCEGRGWFKS 417 Query: 416 NESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVP 475 E++ I R + + ++Q++ V ++ +LL++K + I+ G + I Sbjct: 418 PETVCHEIFRKMIQLHHSSDSQQMLVYVSNRVSDFLLHQKAETLAKIQC-LLGKKIQIKI 476 Query: 476 NDQMETPHYHVLRV 489 + +H+L + Sbjct: 477 DPLYTQNQFHILTI 490 >UniRef50_C9LKU5 Cytoplasmic axial filament protein n=1 Tax=Dialister invisus DSM 15470 RepID=C9LKU5_9FIRM Length = 472 Score = 474 bits (1219), Expect = e-132, Method: Composition-based stats. Identities = 153/490 (31%), Positives = 255/490 (52%), Gaps = 23/490 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M R++++ + E + +A+ +L DL+IE + + IYKG + I P+++ FVD Sbjct: 1 MNRVILSDSTDETI-LAVTRQHKLVDLEIEQQINTEIVGCIYKGIVKNIVPAVDGIFVDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++ FL K++ E K EG ++ Q+ K + KGA +T I Sbjct: 60 GIGKNAFLRRKDLLNE--------------KRFPTEGSPILAQVIKSDTDMKGALITEKI 105 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 S+ G Y V + G+S++I + R LKE + E MGLI+RTA + Sbjct: 106 SMLGKYAVTLSGTGYI-GVSKKIRSESVRKRLKEIGKEI-CAEHMGLIIRTAAENADMDE 163 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + D++ ++W+ I+K +P L+++ES++IV+A RDY+ + ++ DN K+ E Sbjct: 164 FRKDITRLKENWDIIQKRFRMEKSPTLLYRESDIIVKALRDYVNKGTEILITDNRKIYER 223 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + + KI LY +PL +IE QI F+R V LPSGGS++I+ TEAL Sbjct: 224 ICK-LNESEHTIEPDKISLYKERMPLLKKEEIEEQIHLLFKRRVELPSGGSLIIEDTEAL 282 Query: 300 TAIDINSARATRGG-DIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 T ID+NS R G EE + N EAA EIARQ+RLR +GG+I+IDFIDM ++ Sbjct: 283 TVIDVNSGAFNRQGIPHEEAVYLINQEAAIEIARQVRLRGIGGMILIDFIDMQKENQKKD 342 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 + L+ +++D+ + + ++ GL+EM+R+R + SL ++ +CP C+GTG + +S Sbjct: 343 IVGILQRELKKDKVKSIVCGMTSLGLVEMTRKRTTHSLIKNYCDICPICNGTGHILSVQS 402 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 + I R +E +++ +A+ L E+++ + +I ND Sbjct: 403 VIQQIHRELETVKRYGGARDLVIRCHPEVAARLKEEQKAGYF---MKYFNREIMIEENDH 459 Query: 479 METPHYHVLR 488 + Y VL Sbjct: 460 LNREVYSVLS 469 >UniRef50_D2RC82 S1 RNA binding domain protein n=8 Tax=Bifidobacteriaceae RepID=D2RC82_GARVA Length = 1093 Score = 473 bits (1217), Expect = e-131, Method: Composition-based stats. Identities = 141/425 (33%), Positives = 243/425 (57%), Gaps = 14/425 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 ++R+++ + ++++++ L + + NIY G+I + PS+EAAFVD Sbjct: 518 VERLMVVRERDRHTQISVIEDNILVEHYVSDIQEVATVGNIYLGRIQNVLPSMEAAFVDI 577 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+G L E+ + I+ + G V+VQ+ K+ G+KGA LT+ + Sbjct: 578 GQARNGVLYAGEVNWDMARLEGQPR---RIELAFKSGDPVLVQVTKDPIGHKGARLTSQV 634 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LAG +LVL+P+ G+SR++ +R+ L+ ++ + P+ MG+I+RTA G S E++ Sbjct: 635 TLAGRFLVLVPSGGMT-GVSRKLSDRERSRLRAIVSKIA-PKDMGVIIRTAADGASEESI 692 Query: 181 QWDLSFRLKHWEAI---KKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 + DL +K WE I ++ P L+ E +V +R RD D +++++ V Sbjct: 693 EKDLDSLVKQWERIEAKREEYLHGKRPKLLQGEPDVAIRVVRDIFNDDFQKLIVEGEGVR 752 Query: 238 ELARQHIAALGRPDFSSKIKLYT----GEIPLFSHYQIESQIESAFQREVRLPSGGSIVI 293 + +++ + PD SK++ + +F +QI+SQ+ +R+V LP+GGSIVI Sbjct: 753 QRIDEYLEMMA-PDLRSKVEYWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVI 811 Query: 294 DSTEALTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTP 352 D TEA+T ID+N+ R G +EET NLEA++EIARQLRLRD+GG+++ID++DM Sbjct: 812 DRTEAMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVM 871 Query: 353 VRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGT 412 ++ V RL E + +DR + Q++ ++ GL++M+R+R+ L E+ CP C G G Sbjct: 872 PANRDLVLRRLLECLARDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRGF 931 Query: 413 VRDNE 417 + +E Sbjct: 932 ILHDE 936 >UniRef50_A6CTK6 Cytosolic axial filament protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CTK6_9BACI Length = 494 Score = 473 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 142/489 (29%), Positives = 253/489 (51%), Gaps = 7/489 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M R+++NA +E+ R A + + + P E NIY G++ ++E L AAF++ Sbjct: 10 MNRIIVNALGREK-RWARLRDGIMESFHVYQPEKESIAGNIYIGRVDKVEKGLNAAFINI 68 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++GFL ++++A EY + I +L +GQ++IVQ+ K+ G KG +T I Sbjct: 69 GEGKNGFLHIEDLA-EYMLLDEKERKTAEINRLLHQGQKLIVQVKKDPAGTKGPRVTGII 127 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 + G+ LV +P+ R +S++ +++ + S E G++ RTA +GK+ + + Sbjct: 128 EMKGTSLVYLPHG-RYTAVSKKASSEEQKKKWRRFGSRIKEEEEGIVFRTAALGKAEKEI 186 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q + K ++ + ++ S+ APFL+H++ + + + EI+ D+ Sbjct: 187 QNEYLGLKKQYQELYSSSLSKKAPFLLHRQDVMKEDILEEIKKVKQAEIITDDYSWKNEF 246 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++ + + +I + +F HY++E+QIE A ++ V L +G +IVI+ TEALT Sbjct: 247 QEFLHN-NKASLGGEITHFQSHENIFVHYRVETQIEKAMKKVVWLDNGATIVIEPTEALT 305 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ID+N+ + T D+ +T TN AA EIARQL++R+L G+I+IDFI+M +HQ V Sbjct: 306 VIDVNTGKFTGKSDLSQTVLKTNELAAKEIARQLKIRNLSGIILIDFIEMKSEQHQTEVV 365 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N L+E +++D R I + G+L+++R++ P L E CP CSG G V ES++ Sbjct: 366 NALKEGLKEDGKRTTIVGFTELGILQLTRKKTKPPLLEYISCRCPICSGYGMVESAESMA 425 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 + R + E + +V + E + +E + + P Q Sbjct: 426 YKLEREL-YELYPADEDKVIIEATEDVQKVFKGESSQYLKEMEKSINK-KIEFQPVSQSH 483 Query: 481 TPHYHVLRV 489 P Y + R+ Sbjct: 484 -PFYRIKRL 491 >UniRef50_Q2GKZ9 Ribonuclease, Rne/Rng family n=10 Tax=Anaplasmataceae RepID=Q2GKZ9_ANAPZ Length = 636 Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats. Identities = 177/503 (35%), Positives = 270/503 (53%), Gaps = 24/503 (4%) Query: 79 PANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPN-NPRAG 137 H +++V++ Q+++VQI KEERG+K A +T+I LAG Y + MPN + Sbjct: 156 KGKLVPHKMYKVQNVIKVDQKLMVQITKEERGSKCATFSTYIVLAGRYCIFMPNSGNKNS 215 Query: 138 GISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKK 196 GISRRI+ R LKE L ++LP+ G+I+RTAG ++ + L+ DLS+ W+ +K Sbjct: 216 GISRRIDDCVHRKNLKEFLDEMKLPKEAGVIIRTAGSNRTHKELERDLSYLQSTWDEVKS 275 Query: 197 AAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKI 256 + ES P L++ E++VI R RD+ +++ ++++ K L +++ ++ ++ Sbjct: 276 SFESVTHPSLLYVEADVIKRTLRDFCDENVHDVVVAGSKAFGLVKEYAKSMFGNRL--RV 333 Query: 257 KLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIE 316 + Y G IP+F+HY++ +QI + ++ LPSGG +VI TEAL +ID+NS R T IE Sbjct: 334 RTYKGSIPIFTHYRVNAQILELYTDKIYLPSGGYLVITPTEALVSIDVNSGRMTGEDSIE 393 Query: 317 ETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQI 376 ETA+ TN+EA EIARQ+ LR L GLIVIDFIDM R+ RAVE +REA + D+A+IQ Sbjct: 394 ETAYRTNMEAVKEIARQVNLRGLSGLIVIDFIDMVKYRYCRAVEAEVREAFKGDKAKIQF 453 Query: 377 SHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENT 436 +IS FGL+E+SRQR+ S+ +SS C C G G R ES+S SILR + A K Sbjct: 454 GYISAFGLMEISRQRVKQSILDSSTVQCHHCKGVGRTRSLESISASILRDVSYVANKNPE 513 Query: 437 QEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETP 496 + + V + S+L N KR + IE+ V + +D + Y++ R KG + Sbjct: 514 KILVVSVVSSVVSHLFNSKRRQIAEIESEF-KVLIRLDVDDNLGISDYNI-RAEKGYSS- 570 Query: 497 TLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPK 556 LHEE + + +K+ E L PA + A Sbjct: 571 -------LLHEELSSAVVVTADSVKKKEEAAEL---------PAEGTDHQKSLAENVAEV 614 Query: 557 AAPATPAAPAQPGLLSRFFGALK 579 L+R + Sbjct: 615 GESVVAVTWVDK-WLTRMLSKIS 636 Score = 102 bits (254), Expect = 8e-20, Method: Composition-based stats. Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 1/85 (1%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKA-NIYKGKITRIEPSLEAAFVDY 60 KR+LI+A +E+RVA++D ++ + D E +Q + NIY + RIEPSL+A F++Y Sbjct: 11 KRILIDAVYLDEIRVAVLDEGKVVEFDQELKDRKQLRGGNIYFAVVRRIEPSLQAVFIEY 70 Query: 61 GAERHGFLPLKEIAREYFPANYSAH 85 G +HGFLP EIA E++ Sbjct: 71 GVGKHGFLPFSEIAVEHYQIPQEEK 95 >UniRef50_P72656 Ribonuclease E homolog n=10 Tax=Cyanobacteria RepID=RNE_SYNY3 Length = 674 Score = 471 bits (1211), Expect = e-131, Method: Composition-based stats. Identities = 141/417 (33%), Positives = 226/417 (54%), Gaps = 15/417 (3%) Query: 1 MKRMLINATQQEELRVALVD-GQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 M + ++ A E+ +VA V ++ +L + Q+ +IY G + I PS++AAF++ Sbjct: 1 MPKQIVIA---EKHQVAAVFWKDQIQELVV--STGSQQVGDIYLGLVDNILPSIDAAFIN 55 Query: 60 YGA-ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 G E++GF+ + ++ +I ++L Q V+VQ+ KE GNKG LT Sbjct: 56 IGDTEKNGFIHVSDLGPVRL-----RRTAGSISELLSPQQRVLVQVMKEPTGNKGPRLTG 110 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAE 178 IS+ G Y+VLMP R +SRRI ++ ALA L P GMGL+VRT + Sbjct: 111 NISMPGRYMVLMPYG-RGVNLSRRINREEERSRLRALAVLIKPPGMGLLVRTEAEDVPED 169 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 A+ DL K WE +++ A +R AP L+ ++ + I R RD ++ I++D P ++ Sbjct: 170 AIIEDLENLQKQWELVQQQAMTRSAPMLLDRDDDFIKRVLRDMYSSEVNRIVVDTPAGMK 229 Query: 239 LARQHIAALGRPDFSSKIKL--YTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDST 296 +Q + + + + + + + ++++ + I A + V LPSGG I+I+ T Sbjct: 230 RIKQQLMNWDQGRLPEGVLIDCHRESLSILEYFRVNATIREALKPRVDLPSGGYIIIEPT 289 Query: 297 EALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 EALT ID+NS T + ET TN EAA EIARQL+LR++GG+I+IDFIDM + Q Sbjct: 290 EALTVIDVNSGSFTHSANSRETVLWTNYEAATEIARQLKLRNIGGVIIIDFIDMDSHKDQ 349 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 + + D+AR QI+ ++ GL+E++R+R +L E CP C G G + Sbjct: 350 LQLLEHFNRCLETDKARPQIAQLTELGLVELTRKRQGQNLYELFGQPCPECGGLGHL 406 >UniRef50_Q31PW1 Ribonuclease, Rne/Rng family n=19 Tax=Cyanobacteria RepID=Q31PW1_SYNE7 Length = 808 Score = 470 bits (1210), Expect = e-130, Method: Composition-based stats. Identities = 192/787 (24%), Positives = 315/787 (40%), Gaps = 46/787 (5%) Query: 1 MKRMLINATQQEELRVALVD-GQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 M + ++ A E+ R+A V ++ + + H + +IY G + + P ++AAFV+ Sbjct: 55 MPKQIVIA---EQHRIAAVFAEDQIEEFIVAKGTH--QIGDIYLGVVENVLPGIDAAFVN 109 Query: 60 YGA-ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 G E++GF+ + ++ + A I ++L Q+V+VQ+ KE +KG LT Sbjct: 110 IGDSEKNGFIHVTDLGPLRLRRSAGA-----ITELLAPQQKVLVQVMKEPTSSKGPRLTG 164 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAE 178 ISL G YLVLMP + +SRRI + AL+ L P GMGL+VRT G + E Sbjct: 165 NISLPGRYLVLMPYSSGV-SLSRRIMSESERNRLRALSVLIKPAGMGLLVRTEADGIAEE 223 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 + DL + WE + A+S PAP L+ ++ + I R RD + + I++D+ L+ Sbjct: 224 LIIEDLESLQRQWEQTLQLADSTPAPALLTRDDDFIQRVLRDMYDEGVNRIVVDSHTGLK 283 Query: 239 LARQHIAALGRPDFSS--KIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDST 296 +QH++A G + + I+ Y + ++++ + I A + V LPSGG ++I+ T Sbjct: 284 RVKQHLSAWGAGEIAPGLLIEQYRDRSSILDYFRVNAAIREALKPRVDLPSGGYVIIEKT 343 Query: 297 EALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 EALT +D+NS TR ET TN EAA EIARQLRLR++ G+I++DFIDM R Q Sbjct: 344 EALTVVDVNSGSFTRSATARETVLWTNCEAAAEIARQLRLRNIAGVIIVDFIDMDSRRDQ 403 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRD- 415 V A+R D++R QIS +S GL+E++R+R ++ E C C G G V Sbjct: 404 LQVLEHFTRALRHDKSRPQISQLSELGLVELTRKRQGQNIYELFSTPCTTCGGLGHVAHL 463 Query: 416 -NESLSLSILRLIEEEALKENTQEVHAIVPV----PIASYLLNEKRSAVNAIETRQDGVR 470 E + I+R + + + P L+ RSA+ R GV Sbjct: 464 PGEVGAQPIVRTSDRPPITTPVATTTPVSASTNLAPSNDSYLSPARSALA----RATGVP 519 Query: 471 CVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALA 530 ++ TP + L P+ + P ++ Sbjct: 520 PLL----NETTPASELENNGDSYSGLGLLERSPQRRGRRRGGGRNAGPSLPNTGINPEIS 575 Query: 531 TFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKP 590 A A + + +T + + + E+ Sbjct: 576 ASPGL----AEALAATTRDSAPERDRDSESTGMSRRPRRQPPEPPVIVAVELTLEEQELY 631 Query: 591 TEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQ- 649 A + + +E+ + D R +RR + + Sbjct: 632 AWMGASPLIRAESLPEPSQPVLVGVYAQESEKEPAIAAAKALYDQRSRHRRGGGDSGRPT 691 Query: 650 -TAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETE 708 E RE+ ++ ++ + P + S + A E + T Sbjct: 692 LARENRETASAESSESRSDSSSTAETPAEQPSSITTEGATSAVTAEVIAASEPTPAEPTP 751 Query: 709 QEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKV 768 E P A VA E + P E PAP + Sbjct: 752 AEPTPAEPTP----------AEPTPVEPTPAPVAVASEASEVTAP-ASEVPAPGRRRRRS 800 Query: 769 PLPVVAQ 775 +Q Sbjct: 801 SAQRESQ 807 >UniRef50_C1PAJ8 Ribonuclease, Rne/Rng family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PAJ8_BACCO Length = 492 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 148/488 (30%), Positives = 247/488 (50%), Gaps = 15/488 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M R +I + E R A+++ ++ + I PG K NIY GK+ ++P + AAF+D Sbjct: 1 MDRSIIINVKTREKRYAVIENGKVSGIRIRQPGDAAKVGNIYLGKVADVKPGINAAFIDI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G RHG+L + + S + P I L GQ V+VQ+ K+E G KG LT I Sbjct: 61 GGIRHGYLHISRLPAFA----NSKNSNPTISAYLSPGQTVMVQVKKDETGQKGPLLTGII 116 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 L+G +V +P +S++ + DR + + P+ G+IVRTA + + Sbjct: 117 ELSGEQIVYLPEGKYT-AVSKKADDADRNRWRNRVRKALEPQ-EGIIVRTAAIHAGGDGW 174 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 + +L ++ + + A AP ++H++S V FR+ +R G +++D+ + L Sbjct: 175 RDELKCLRLRYKCLLEKAAQLKAPAVLHEKSTVEAEIFRELVRLKSGTVIVDDAEALARL 234 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + GRP+ +LY+G+ +F+ Y+I+ +E A +R V L +G +VID TEALT Sbjct: 235 KA--LLAGRPELDWSFELYSGKQNIFTRYRIDRTLEDALKRVVWLENGAYLVIDETEALT 292 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ID+N+ + T D ET TNL AA EI RQL+LRD GG+I++DFIDM + V Sbjct: 293 IIDVNTGKYTGTTDQAETVLKTNLLAAKEIGRQLKLRDYGGIILVDFIDMQRDEQRAQVR 352 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 L + + D + +I+ + G+L+M+R++ SL E+ VCP C G+G + E+L+ Sbjct: 353 AVLEKELENDEKQTRITGFTELGILQMTRKKTRKSLPEALLSVCPVCGGSGKIESPETLA 412 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCV--IVPNDQ 478 + R + E + + V + E + +E G++ + I + Sbjct: 413 FRLERELWEAPYADY-EAVLIECTQDVKDCFCGETDVHLKRLEN-LLGMKLIFHITRDPH 470 Query: 479 METPHYHV 486 P Y + Sbjct: 471 ---PFYAI 475 >UniRef50_A6LNV2 Ribonuclease, Rne/Rng family n=2 Tax=Thermosipho RepID=A6LNV2_THEM4 Length = 465 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 148/465 (31%), Positives = 252/465 (54%), Gaps = 22/465 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M+++L+ + L A+++ RL +L S E+ NIY G+I R+ +L+A FV+ Sbjct: 1 MEKILVLNSLDNGLHYAIIENNRLVEL--ASDEEEKLTGNIYLGRIERVVNALDALFVNI 58 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +++GFL K++ +YF L G +++VQ+ K+ G+KG LT+ I Sbjct: 59 GTKKNGFLRFKDVPEKYFEFFSLKK--------LENGGKILVQVKKDPVGDKGPQLTSNI 110 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 S+AG Y+VL P + G+S++IE + +R L + +G+I+RTA G Sbjct: 111 SVAGRYVVLFPFSE-VVGVSKKIEDEDERKRLYDLAGRFSEKYNLGVIMRTASEGLDEVH 169 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + ++ K I ++ + + ++++E N++ R+ L +D+ I+ +N K +EL Sbjct: 170 IMSEIDILSKKINKIIESFKRKRKAQVLYKEENLLDYILREKLTKDVKLIITNNFKHVEL 229 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 R+++ + KI++ G+ F + I +R+V LPSGG I+ID EAL Sbjct: 230 IRKYLKIFSK---RPKIEIIDGDS--FDYMDIYKYFRELLKRKVLLPSGGEIIIDKAEAL 284 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+NS +G + +ETAF TN EA EI RQLRLR++GG+I+IDFIDM ++ + Sbjct: 285 TVIDVNSKHFVKGKNQQETAFQTNKEAVSEIFRQLRLRNIGGIILIDFIDMDSDEKKKLI 344 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 ++ E +++D+++I+I +R GLLEMSR+R S E+ +CP C+GTG + + Sbjct: 345 LKQIDEEIKKDKSKIEIFGFTRLGLLEMSRKRTVRSFFENYITICPICNGTGFIVSPKMT 404 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLN---EKRSAVNA 461 + + IEE E+ +EV + L +KR + Sbjct: 405 LKKLYQKIEEA--PEDAKEVIIKLHPYFKDKLEKSELKKRKDIVY 447 >UniRef50_A7HQG8 Ribonuclease, Rne/Rng family n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HQG8_PARL1 Length = 506 Score = 466 bits (1200), Expect = e-129, Method: Composition-based stats. Identities = 149/471 (31%), Positives = 234/471 (49%), Gaps = 23/471 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHE-----------QKKANIYKGKITRI 49 M ++ E RVA+V+ R +L +E + NI+ G++ R+ Sbjct: 1 MSEEVLINVGPGETRVAIVEDGRPVELFLERTMEDDLKAKTGRAGHSLIGNIFLGRVQRV 60 Query: 50 EPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEER 109 P ++AAFV+ G ER GFL +E P I ++EGQ ++VQ K+ Sbjct: 61 LPGMQAAFVEVGLERAGFLGAREARCLCELTGLDEGTLPPISACVQEGQTILVQAVKDPI 120 Query: 110 GNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLE--------L 160 +KGA L+ +++ G LVL+PN +SRRIE + +R L + + Sbjct: 121 SDKGARLSANVTIPGRLLVLVPNQSGV-ALSRRIEDEPERERLAALVEEMVERFNPMGVT 179 Query: 161 PEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRD 220 E G IVRTA +G +AE + D + W +++ + AP ++ + + + + RD Sbjct: 180 GEPAGFIVRTAAIGATAEDIAADARQLAEEWRKVRETEKRSTAPCVVFHDLDPVSKTLRD 239 Query: 221 YLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQ 280 + D +LID A+++ P+ +I+L+ G LFS Y ++ +IE+A + Sbjct: 240 CVSADTSRVLIDCADAFGEAQRYCRR-AMPEMLDRIQLFNGPGQLFSLYDVDGEIEAALE 298 Query: 281 REVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLG 340 LPSGG I +++TEALTAID+NS R T +EET+ NLEA EI QLRLR G Sbjct: 299 PRAELPSGGWITVETTEALTAIDVNSGRYTAATGLEETSVKINLEAVHEIVYQLRLRGTG 358 Query: 341 GLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESS 400 GLIVIDFI + + + V + L E +DR QIS +S FGL+EM+R+R+ L + Sbjct: 359 GLIVIDFIHLNDPANIQKVIDALNEGFAKDRVPTQISGMSEFGLVEMTRKRVREPLDKLL 418 Query: 401 HHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYL 451 G + +++ +LR I EA + + A V + +L Sbjct: 419 TEP-AYPHGRPRRKTCATMANDLLRRIAREAQATPGRPLVARASVEVVDWL 468 >UniRef50_A0L8J1 Ribonuclease E n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8J1_MAGSM Length = 984 Score = 466 bits (1199), Expect = e-129, Method: Composition-based stats. Identities = 243/872 (27%), Positives = 384/872 (44%), Gaps = 41/872 (4%) Query: 69 PLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLV 128 P + + I+D+L++GQ +++Q+ KE RG KGA+LTT ISLAG Y V Sbjct: 150 PARRPRNNERANRGNRRRHIPIQDILKKGQLLLLQVVKEARGTKGASLTTNISLAGRYTV 209 Query: 129 LMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFR 187 L+P N GGISR+I + R LK L +E+P+ + LI+RTAG+ ++ + D+S+ Sbjct: 210 LLPENSGGGGISRKIMDNQARKALKTMLTEMEIPQEVSLIIRTAGMERTKREIARDMSYL 269 Query: 188 LKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAAL 247 + W+ I++ E P LIH+E ++I+R RD D+ EILID + + + L Sbjct: 270 TRLWKTIQEKVEQHNTPTLIHEEGDLIIRTIRDLYSTDMEEILIDGGEAYRRGKDFMRLL 329 Query: 248 GRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSA 307 P + ++ Y IPLFS YQ+E QIES +R + L +GG +VI+ TEAL +IDINS Sbjct: 330 -MPRYVKAVQPYKDRIPLFSRYQVEHQIESMHERTISLKAGGYLVIEPTEALVSIDINSG 388 Query: 308 RATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAV 367 R+T+ ++E TAF TN++A DEIARQLRLRDLGGLIVIDFIDM +H VE RL+EA+ Sbjct: 389 RSTKEKNVENTAFKTNMQAVDEIARQLRLRDLGGLIVIDFIDMEEKKHNLEVEKRLKEAL 448 Query: 368 RQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLI 427 + DRA+IQ+ IS+FGLLE+SRQR+ P+ ES+ VCPRC+G GT+R ES ++ + R I Sbjct: 449 KGDRAKIQLGKISQFGLLELSRQRMKPAFNESNREVCPRCTGLGTIRSVESTAIRLFRCI 508 Query: 428 EEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVL 487 EE+ ++ P +A+YL N KR + +E ++ + +I + +++TPH+ Sbjct: 509 EEDISSGRFSKLIYFAPADVANYLHNRKRFQMVQLEQ-ENNLELLIEIDPELQTPHFR-- 565 Query: 488 RVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPA 547 +E +A P ++E ++RPE P T + P + A Sbjct: 566 -------------------KERIARPVQDEPVVKERPE-PEEPTLVSEEDEPQELMDDAA 605 Query: 548 APVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQD 607 + G R GA+ G E T E+ P EA + Sbjct: 606 EGGEENRTDPKKRKRRRKRRRGGREREEGAM-----GEETTSLNEEEMPSTEAPAMDDEA 660 Query: 608 RRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKAR 667 + + + + +E +T + + RR RR+ + + E R + E+A Sbjct: 661 DDEGDGDEQANPSESAETTPD-----SPSKRRRRRRRRRRSTSQEESAPRLDSGDEEQAI 715 Query: 668 TADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQ 727 DE ++ ++R++ +L + +E + Sbjct: 716 HGDEPSPSPEDQPQQRDEHPVTLSDVLHSLPTSVTPL--LMEEPDTPQPVLLIDPPTMPI 773 Query: 728 KVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEEN-NA 786 K E + +V+ P + E P E V + +++ Sbjct: 774 KHEVEIETPQPSVLLPEDPQPAIVERTQSTLPGLEVEPPLQEQVAVKKPVRRRRKPAVKK 833 Query: 787 DNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRY 846 + + ++ H S + + + P + A Sbjct: 834 PSAETAESVVSAQEVENHATASVTPAAAENVQDKASIAADP-DAGVTTDVAAGDHPTPSE 892 Query: 847 PIVRPQDVQVEEQREQEEV--HVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAE 904 P+ + + T P PVV P A P V Sbjct: 893 GAEPPKQRRRSSTPRKRATPKADTAAETAAPTTTPEAPVVETPAETPAATTEAKPKAVRA 952 Query: 905 PQPEVVETTHPEVIAAAVTEQPQVITESDVAV 936 P+ A E+ V Sbjct: 953 PRKRTATPRKRATAAKPAAEESHQGEAVPDEV 984 Score = 107 bits (267), Expect = 2e-21, Method: Composition-based stats. Identities = 45/87 (51%), Positives = 60/87 (68%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 KRML++AT EE+RVA+V QRL DLDIE+ Q K NIY G++TR+EPSL+AAFVD+ Sbjct: 3 KRMLVDATHPEEVRVAIVQDQRLIDLDIETCTKAQIKGNIYLGRVTRVEPSLQAAFVDFN 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRP 88 R GFL + +I +Y+P + P Sbjct: 63 DGRQGFLSVNDINPKYYPPEFRPEPDP 89 >UniRef50_Q2S597 Ribonuclease, Rne/Rng family subfamily n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S597_SALRD Length = 596 Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats. Identities = 144/449 (32%), Positives = 248/449 (55%), Gaps = 24/449 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + ++ E+ R+A+V+ +L +L IE+ H++ N+Y G+I ++ PS++AAFVD Sbjct: 1 MSKEIVFNVGNEQTRIAIVEDGKLVELYIENAEHKRTIGNLYLGQIRKVMPSIQAAFVDI 60 Query: 61 GAERHGFLPLKEIA-----------------REYFPANYSAHGRPNIKDVLREGQEVIVQ 103 G E+ FL +++ D+L GQ ++VQ Sbjct: 61 GQEQDAFLHFSDLSDNLPYLLDFLGLEAPTVEAIDVPKGKKDWDKRPSDLLNRGQTILVQ 120 Query: 104 IDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEG 163 + KE NKG+ ++T ISLAG +LVL+P +SR+I D+ E+LAS +P+G Sbjct: 121 VTKEPISNKGSRISTDISLAGRFLVLVPLQNYV-AVSRKITDDEERRRLESLASSLVPDG 179 Query: 164 MGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRP-APFLIHQESNVIVRAFRDYL 222 +G+IVRT + A++L D+ ++ W ++K + +P P L+H++ ++ RD Sbjct: 180 VGVIVRTVAQDRDAKSLDKDMKLLMERWRRVEKRLKDKPSPPELVHEDVDMASSIVRDEF 239 Query: 223 RQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQRE 282 ++ IL+D+ + + ++ A+G P +++L+ G+ P+F I+ + AF+ Sbjct: 240 SEEYDRILVDHEGLYSSIQSYVRAVG-PQLVDRVELHEGDQPVFESVGIQHGADRAFKDR 298 Query: 283 VRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGL 342 V LPSGG + I+ TEA+ +D+NS R+ +G E + N NLEAA IARQ+RLRDLGG+ Sbjct: 299 VELPSGGYLFIEKTEAMHVVDVNSGRSGKGKSQAENSLNVNLEAARVIARQIRLRDLGGI 358 Query: 343 IVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHH 402 IV+DFID+ ++ V + +++ +DRA ++ +S FGL+E++RQRL PS+ + Sbjct: 359 IVVDFIDLRDEDDKKKVYDEVKKGFEEDRAVTKVLPMSDFGLVEITRQRLRPSITTTFSS 418 Query: 403 VCPRCSGTGTVRDNESLSLSILRLIEEEA 431 +GT + ++ LR E + Sbjct: 419 A----NGTPSDDGDDGADPEELRQAERKI 443 >UniRef50_Q2GES6 Ribonuclease, Rne/Rng family n=2 Tax=Neorickettsia RepID=Q2GES6_NEOSM Length = 549 Score = 464 bits (1193), Expect = e-128, Method: Composition-based stats. Identities = 150/542 (27%), Positives = 267/542 (49%), Gaps = 23/542 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK++LI+ ++ E R+A++ L D E +K NIY+G + +++ SL+AAFV+Y Sbjct: 1 MKKILID-SRDGETRLAILRSGLLVGYDCEHTNSLPQKGNIYQGIVFKVDDSLQAAFVEY 59 Query: 61 GAERHGFLPLKEIAREYFP-------------ANYSAHGRPNIKDVLREGQEVIVQIDKE 107 +GFLP EI YF + + + N +V+++G + VQ+ KE Sbjct: 60 LPGEYGFLPFSEIPVIYFDLLEEVKANAIAEGKHVNLYKHFNATEVIKKGLVLFVQVTKE 119 Query: 108 ERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLEL-PEGMGL 166 +R K LT ++ L G Y VLMP +S++I + A E+ G+ Sbjct: 120 KRRTKDVTLTAYVKLPGRYCVLMPFLKDLI-LSKQIVDEQAVSRLTHFAEEEMANRKCGV 178 Query: 167 IVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDI 226 + + + + D L WE + + AP L+ +E+N++ + RD + Sbjct: 179 VFKPYCADADKKNILGDYCSLLSEWEKVVSQNDKSKAPRLVFREANLVKKFLRDSYDGSV 238 Query: 227 GEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLP 286 GE+++++ V + A+ +I + + I LY+ +P+F Y++E Q++ ++ + L Sbjct: 239 GEVIVNHSDVYQEAKDYIQNSLHFENPN-ITLYSDTLPVFDKYKVEPQVDGLYEETIYLR 297 Query: 287 SGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVID 346 +G IVI++TEALTA+D+NS R + +IEETA+ N+EA EI R L LR + G++VID Sbjct: 298 NGAYIVINTTEALTAVDVNSGRMKKESNIEETAYKVNMEAVAEIVRHLELRGIAGIVVID 357 Query: 347 FIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPR 406 FIDM ++ VE L +A ++ R+R+QI+ I++FGL+ +S+QR ++ +S CP Sbjct: 358 FIDMNNSKYMLNVERALLDAFKRYRSRVQIAPINKFGLIALSKQRTKHNILDSHTVKCPC 417 Query: 407 CSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQ 466 C G G V E + R+ +EV +A + N R + E + Sbjct: 418 CEGKGKVLKME---HQVRRVFSAIYTAPRCREVTVTANPELAVAVFNGYRKMLAQAE-KV 473 Query: 467 DGVRCVIVPNDQMETP-HYHV-LRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRP 524 G V ++++ + + + E +L + +++ E + K Sbjct: 474 VGGSIVFKIDEKLGLAKGFEIAFHGKDDVEILREDQVLTTVEDQSNEKTVTEGSSVVKVE 533 Query: 525 EQ 526 + Sbjct: 534 SR 535 >UniRef50_C0ZAL2 Putative ribonuclease G n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZAL2_BREBN Length = 491 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 142/488 (29%), Positives = 247/488 (50%), Gaps = 14/488 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK++ I +TQ +R+A ++ +L + + +IY+G+I ++P +++AFVD Sbjct: 1 MKQVAI-STQGGSIRIAFMENGKLQEWRTQDVRSHASVGDIYQGRIADVKPGIQSAFVDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++ +L + + +PNI + + GQ+V+VQ+ KE K +T I Sbjct: 60 GTGQNAYLYVDDTV----GVESGGTAKPNIAERVHVGQKVLVQVSKEAMEMKAPKITMRI 115 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLV +P + +SR+I D + + + + S + +G G I+RT + L Sbjct: 116 SLQGRYLVYLP-TEESISLSRKISDDTKRKRLQQVISSTVEQGEGCILRTEAAEAEEQTL 174 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 +L++ W+ +++ AE + I Q++ +I A RD L + E+L++ + Sbjct: 175 IRELTYLRNRWQDMRRTAEGLRSTGRIFQDAELIEVALRDGLANGMDELLVEGAATHQQV 234 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + +AA P+ K++ Y G+ PLF + +E+++ A R+V L SGGS+VID TEA+T Sbjct: 235 KAALAAFA-PEVQEKLRWYQGKQPLFDYLGVEAELIRARDRQVPLKSGGSLVIDRTEAMT 293 Query: 301 AIDINSARATRGGDI--EETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 ID+N+ T G E+ TNLEA EIARQLRLRD+GG+++IDFIDM ++ Sbjct: 294 VIDVNTGSFTGAGGQQREQAVTATNLEAVAEIARQLRLRDIGGIVIIDFIDMKEQGNKER 353 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 V +RL++ + +D + ++ GL+EM+R+R+ SL E C C+G G V + Sbjct: 354 VISRLKQELAKDPVPSTVLGMTSLGLVEMTRKRVRASLMERLTEPCEACAGRGRVWRVDE 413 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 L + + A ++ + +P + + A E V Sbjct: 414 LLRRLYVEVTALAKSQDAEAALVDMPPRLLDMI-----EAWEKAEAVTWPVHVYKRLVPS 468 Query: 479 METPHYHV 486 M + + Sbjct: 469 MSPDEFRI 476 >UniRef50_A5FJP9 Ribonuclease, Rne/Rng family n=29 Tax=Bacteroidetes RepID=A5FJP9_FLAJ1 Length = 543 Score = 463 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 144/476 (30%), Positives = 236/476 (49%), Gaps = 31/476 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + + LI + E + AL+ +L +L E + +I+ KI + L AAFV+ Sbjct: 30 VNKELIIRSSSEAVDFALLKDGKLIELHKEEEKSNFQVGDIFIAKIRKPVAGLNAAFVNV 89 Query: 61 GAERHGFLPLKEIAR----------------------EYFPANYSAHGRPNIKDVLREGQ 98 G E+ FL ++ + F I D+L Q Sbjct: 90 GFEKDAFLHYHDLGPNLASQLKFIKLVSAGKLKDFSLKTFQFEKEIDKDGIITDILSANQ 149 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALAS 157 V+VQ+ KE KG ++ +SLAG ++VL+P + R IS++IE ++ LK+ + S Sbjct: 150 SVLVQVVKEPISTKGPRISAELSLAGRFIVLVPFSDRV-SISQKIEDKKEKDRLKKLVLS 208 Query: 158 LELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRA 217 ++ P+G G+IVRT GK+ L+ DL L W A+ K + P + E N Sbjct: 209 IK-PKGFGVIVRTVAEGKNVAELEKDLQNLLGRWSAMCKKLPTAHHPSKVLGELNRASSI 267 Query: 218 FRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYT-GEIPLFSHYQIESQIE 276 RD I ID+ ++ ++++ + P S +K Y + P+F Y IE QI+ Sbjct: 268 LRDVFNDTFSGIQIDDEELYHQTKEYLQEIA-PSKQSIVKFYQSNDTPIFEKYNIERQIK 326 Query: 277 SAFQREVRLPSGGSIVIDSTEALTAIDINSA-RATRGGDIEETAFNTNLEAADEIARQLR 335 ++F R V + G ++I+ TEAL ID+NS R+ + + E+TA N+ AA EIARQLR Sbjct: 327 TSFGRTVSMSKGAYLIIEHTEALHVIDVNSGNRSNKATNQEDTAMEVNMIAAAEIARQLR 386 Query: 336 LRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPS 395 LRD+GG+IV+DFIDM+ +++ + + LRE + D+A+ +I S+FGL++++RQR+ P Sbjct: 387 LRDMGGIIVVDFIDMSNPENRKVLFDFLREEMSDDKAKHKILPPSKFGLVQITRQRVRPE 446 Query: 396 LGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYL 451 + + P G + + I +E N +V +A+YL Sbjct: 447 VNIKTREEDPN-KVNGEIEAPILIIDKITSDLERLLKTHN--KVVLNTHPFVAAYL 499 >UniRef50_Q1D0P4 Ribonuclease, Rne/Rng family n=7 Tax=Proteobacteria RepID=Q1D0P4_MYXXD Length = 936 Score = 461 bits (1187), Expect = e-128, Method: Composition-based stats. Identities = 142/405 (35%), Positives = 219/405 (54%), Gaps = 5/405 (1%) Query: 83 SAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRR 142 I+D+L+ GQEV+VQI K+ G KGA LT+ IS+ G +LV MP GISRR Sbjct: 352 KPRRTDKIEDLLKVGQEVVVQISKDPIGTKGARLTSHISIPGRHLVFMPTVDHV-GISRR 410 Query: 143 IEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESR 201 I + +R L++ + L P G G IVRT E L+ D+ F ++ W + + E R Sbjct: 411 ISNEKERRRLRDIVDRLR-PPGTGFIVRTVAENVPQEKLESDIRFLIEVWNQVVRKNEKR 469 Query: 202 PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTG 261 P L+H + ++I+RA RD D+ ++++D+ + E + A P ++ L+ G Sbjct: 470 GGPGLLHPDLDLILRATRDLFAHDVEKLVVDDREEYERILGFVTA-QDPALRDRVALHEG 528 Query: 262 EIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFN 321 + +F Y IE +++ A QR+V L SGG ++ID EALTAID+NS R +EET Sbjct: 529 DDTVFDAYGIEQELQRATQRKVWLKSGGYLIIDQAEALTAIDVNSGRYVGKKSLEETITK 588 Query: 322 TNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISR 381 N+EAA EI QLRLR++GG+I+ DFIDM +++ V L+EA+ +D+A+ + IS Sbjct: 589 INVEAAKEIVYQLRLRNIGGIIICDFIDMEKAQNRDKVFKALQEALGRDKAKTNVLRISE 648 Query: 382 FGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHA 441 GL+EM+R+R+ S+G H CP C G G V+ +++ I R I EA + Sbjct: 649 LGLVEMTRKRVRESIGRMLHEDCPYCDGNGFVKTATTVAYEIFREIRREAPGYKDSTLVI 708 Query: 442 IVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHV 486 +A L E+R+ + + R + + Y + Sbjct: 709 NCNAEVARLLQGEERNELRHLMDRYNK-SIQVKAQQNYHREQYDI 752 Score = 99.1 bits (245), Expect = 8e-19, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M +L+ E RVALV+G + + +E + NIYKG++ R+ P ++AAFVD Sbjct: 1 MSSILVINAAGRETRVALVEGGHIAEFYLERKKDKGVVGNIYKGRVVRVLPGMQAAFVDI 60 Query: 61 GAERHGFLPLKEIARE 76 G E+ FL + ++ + Sbjct: 61 GLEKAAFLYVSDVVYD 76 >UniRef50_C1F7B7 Ribonuclease, Rne/Rng family, insertion n=2 Tax=Bacteria RepID=C1F7B7_ACIC5 Length = 1013 Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats. Identities = 138/401 (34%), Positives = 219/401 (54%), Gaps = 5/401 (1%) Query: 88 PNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIE-GD 146 P I D+L++GQE++VQI KE KGA +T+ I+L G +LV MP G+SR+I + Sbjct: 615 PIISDLLKQGQEILVQIAKEPIAKKGARITSHIALPGRFLVFMPTVNHV-GVSRKISSDE 673 Query: 147 DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFL 206 +R LK L S + G IVRTA G + L+ D+ F + W IK+ ++S AP L Sbjct: 674 ERQRLKRILISEKGDATGGFIVRTAAEGAGEDELRADIRFLINLWNEIKERSDSGKAPAL 733 Query: 207 IHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLF 266 I+ + N++ R RD + ++ I +D+ E + + +P ++KLYT E+PLF Sbjct: 734 IYHDLNLVERILRDQVSEEFSTIWVDSETDYERIVRFLNRF-QPSLVRRVKLYTKEMPLF 792 Query: 267 SHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRG-GDIEETAFNTNLE 325 + I+ +I A + +V L SGGSIVI+ TEAL AIDIN+ + +E+T TNL+ Sbjct: 793 EQFGIQDEITKALKSKVWLKSGGSIVINQTEALVAIDINTGKYVGKTARLEDTIVKTNLD 852 Query: 326 AADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLL 385 A EI RQ+RLRDLGG+IVIDFIDM +++ V L E ++ DRA ++ + FGL+ Sbjct: 853 AIPEIVRQIRLRDLGGIIVIDFIDMDERKNRHKVLQALEEELKHDRAPSKVLQFNDFGLV 912 Query: 386 EMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPV 445 ++R+R+ SL + C C+GTG V+ +++ I + + ++V V Sbjct: 913 AITRKRVKQSLERTLSIPCNICTGTGMVKSPATVANEIYVEMRKMQRHLENKDVLLRVNP 972 Query: 446 PIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHV 486 + L +N +E G ++ + + + + Sbjct: 973 EVVKTLKASGGRWLNELEE-MTGKTIIVKSDPTLHPEQFDI 1012 Score = 96.4 bits (238), Expect = 6e-18, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 43/76 (56%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + + ++ E R+A+++ +L ++ E +IYKG++TR+ P +++AFVD Sbjct: 1 MAKEICISSTPHETRLAILEDDQLAEIYYERENEYTLAGSIYKGRVTRVLPGMQSAFVDI 60 Query: 61 GAERHGFLPLKEIARE 76 G ER FL + + E Sbjct: 61 GLERDAFLYVTDFLEE 76 >UniRef50_Q2JW46 Ribonuclease, Rne/Rng family n=4 Tax=Synechococcus RepID=Q2JW46_SYNJA Length = 711 Score = 458 bits (1177), Expect = e-127, Method: Composition-based stats. Identities = 146/417 (35%), Positives = 226/417 (54%), Gaps = 15/417 (3%) Query: 1 MKRMLINATQQEELRVALVD-GQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 M R ++ E+ RVA V ++ +L + S + ++Y G + + PS++AAFV+ Sbjct: 1 MPRQIVI---DEQHRVAAVFAEDQVQELIVASGT--YQVGDVYVGIVENVLPSIDAAFVN 55 Query: 60 YGAE-RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 G+ R+GF+ + ++ N+ +I +++ Q+V+VQ+ KE GNKG LT Sbjct: 56 IGSGERNGFIHVSDLGPLRLKRNH-----ASISELVLPQQKVLVQVMKEPTGNKGPRLTG 110 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAE 178 ++ G YLVL P +SRRIE + ++LA L P MGL+VRT G S E Sbjct: 111 DLAFPGRYLVLRPYGKGV-HLSRRIEDREERNRLKSLAILIKPPQMGLLVRTEAEGVSEE 169 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 A+ DL K WE I++ ++ P L+ ++ + I R RD +D+ I+ D+P + Sbjct: 170 AMIEDLEQLKKLWEDIQQQYQAARGPGLLSRDDDFIQRVLRDVYSEDVNRIVTDSPAGAK 229 Query: 239 LARQHIAALGRPDFSSKIKL--YTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDST 296 R ++ + + + + P+ ++++ + I A + V LPSGG IVI+ T Sbjct: 230 RVRSYLQGWNKGQMPPGVVVDAHREPTPILEYFRVNAVIRQALRPRVDLPSGGYIVIEPT 289 Query: 297 EALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 EALT ID+NS T+ ET TN EAA EIARQLRLR++ G+IV+DFIDM R Q Sbjct: 290 EALTVIDVNSGSFTQSATSRETVLWTNCEAATEIARQLRLRNIAGVIVVDFIDMDSRRDQ 349 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 V +A+ D+AR Q+ +S GL+E++R+R SL E H CP C G G + Sbjct: 350 LLVLEHFNKALSSDKARPQVVQLSELGLVELTRKRQGQSLYEIFGHSCPTCEGLGIL 406 >UniRef50_B2V9I2 Ribonuclease, Rne/Rng family n=4 Tax=Hydrogenothermaceae RepID=B2V9I2_SULSY Length = 470 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 140/433 (32%), Positives = 218/433 (50%), Gaps = 18/433 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M R LI + +++ +L IE ++ +IYKGK+ R ++EA FVD Sbjct: 1 MDRKLIVTKGFKNTFYLILEDNIPVELKIEDIEISKQTGSIYKGKVLRYSQAMEAFFVDI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++ FLP K+I E + +G ++VQ+ + KGA L+ I Sbjct: 61 GEDKEAFLPKKDICEEVCKN-------------IDKGSSILVQVKRSPVSTKGAKLSCKI 107 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASL---ELPEGMGLIVRTAGVGKS 176 SL G YLVL+P + IS + E D+R E+KE + +L E GLI+RTA Sbjct: 108 SLPGKYLVLLPQSKGKISISSKYEDNDERNEIKERIKNLLHEINQENFGLIIRTAAKDAP 167 Query: 177 AEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKV 236 EA+ D F ++ W I+K + AP +I++E RDY EI+ D+ + Sbjct: 168 DEAILEDFKFLIELWNQIQKDYNKKKAPSVIYEEPFKAFAILRDY-AGSFSEIISDDVSI 226 Query: 237 LELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDST 296 L+L ++ + + LF Y+++ I L SG +VI T Sbjct: 227 LKLIKKFVLENFTNANIKMTPYRKRKESLFYEYELDKLINKILSPYAYLKSGSYLVIQET 286 Query: 297 EALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 EAL ID+NS + ++EETAF NLEA EI RQ+RLRDL G++VIDFIDM H+ Sbjct: 287 EALVVIDVNSGSCHKQKNLEETAFRINLEAIPEIVRQIRLRDLSGIVVIDFIDMINQEHK 346 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDN 416 A+ RL+E ++D+ ++I +++ GLLE+SR++L SL + C C G G ++ Sbjct: 347 EAIVERLKEEFKKDKRPVKIKGLTQLGLLELSRKKLEESLIKQLSDYCQHCYGRGYIKSQ 406 Query: 417 ESLSLSILRLIEE 429 + + + + I + Sbjct: 407 DVVIFELEKTINK 419 >UniRef50_Q4JWU2 Ribonuclease E n=2 Tax=Corynebacterium jeikeium RepID=Q4JWU2_CORJK Length = 1013 Score = 456 bits (1174), Expect = e-126, Method: Composition-based stats. Identities = 168/687 (24%), Positives = 277/687 (40%), Gaps = 67/687 (9%) Query: 14 LRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEI 73 +V +V+ +L + + H+ N+Y G++ + S+EAAFVD G R+ L E+ Sbjct: 350 TQVGVVEDGQLVEHFVADATHQSLIGNVYLGRVQNVLGSMEAAFVDIGTGRNAVLYAGEM 409 Query: 74 AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 + + I LR G +++VQ+ K+ G+KGA LT IS AG YLV P Sbjct: 410 DWR---SPHLHSKSRKIDQALRPGDQILVQVLKDPIGHKGARLTNRISFAGRYLVYFPAG 466 Query: 134 PRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEA 193 GISR++ +R LK+ L + +G G I+RTA + E + D+ K W+ Sbjct: 467 T-TAGISRKLPAGERKRLKDILGEVITGDG-GAIIRTAAENATEEQITEDVQRLEKRWQE 524 Query: 194 IKK-----AAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALG 248 I+K P +++E N++++ RD D E++ID K + R ++ Sbjct: 525 IQKLENKERNSKGSKPVTLYEEPNMLIQVVRDVFNADFSELIIDGDKSWQAVRDYLGR-T 583 Query: 249 RPDFSSKIKLYT----GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDI 304 P+ ++ + F+ ++ Q+E A R+V LPSGG ++ID TEA+T ID+ Sbjct: 584 SPELMDRVHKWNRGKHDGQDAFAPLDLDQQLEKAMARKVWLPSGGYLIIDHTEAMTVIDV 643 Query: 305 NSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL 363 N+ GG++E T NLEAA+EI RQLRLRD+GG+IV+DFIDM ++Q V RL Sbjct: 644 NTGSFVGSGGNLEATVTENNLEAAEEIVRQLRLRDIGGMIVVDFIDMLLQQNQDLVLRRL 703 Query: 364 REAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSI 423 E + +DR R ++ ++ GL++++R+RL L E+ C C G G + + + Sbjct: 704 SEFLGRDRTRHKLGEVTSLGLVQLTRKRLGTGLLETFSTPCEACDGRGFIMHPDPV---- 759 Query: 424 LRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPH 483 E + P + + H Sbjct: 760 ---------------------------------------EQK--------DPEPRRDHGH 772 Query: 484 YHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTP 543 + K + L + + S+ E + +R Q P T Sbjct: 773 RKERQQAKNQGKNQSKGQLKERGQGKAPERSQREDKQVERTPQVEQTEQTQRPQSPQGTR 832 Query: 544 AEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPE 603 V P AA + QP E A + Sbjct: 833 RRVRRVVRRGTPLAAQGSERQEEQPEPKQEQSQKRGGNAKARNRASDIEGIVASARKRSA 892 Query: 604 RQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVT 663 ++ +N + + + N R A+ + S + Sbjct: 893 QEDPDEPSAADNAERPEQNKVAANRVRRRRRVVRSAHTNARSARSSSGRDAHSSAANRSS 952 Query: 664 EKARTADEQQAPRRERSRRRNDDKRQA 690 + +++PRR+R R N A Sbjct: 953 YEEAKRKFEESPRRKRQTRGNSKSDFA 979 Score = 46.7 bits (109), Expect = 0.005, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 73/239 (30%), Gaps = 15/239 (6%) Query: 613 QNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQ 672 Q + R + + + + + +++ ++ Q A R R+ +V + + Sbjct: 761 QKDPEPRRDHGHRKERQQAKNQGKNQSKGQLKERGQGKAPERSQREDKQVERTPQVEQTE 820 Query: 673 QAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYE 732 Q R + + R+ + L + QEE+ P Q + ++R N K R Sbjct: 821 QTQRPQSPQGTRRRVRRVVRRGTPLAAQGSE----RQEEQPEPKQEQSQKRGGNAKARNR 876 Query: 733 QSVAEEAVVAP---VVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNR 789 S E V + +E A P V + N R Sbjct: 877 ASDIEGIVASARKRSAQEDPDEPSAADNAERPEQNKVAANRVRRRRRVVRSAHTNARSAR 936 Query: 790 DNGGMPRRS--------RRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG 840 + G S + R S +R+R+ R +P P + G Sbjct: 937 SSSGRDAHSSAANRSSYEEAKRKFEESPRRKRQTRGNSKSDFAPRPEDFGVTNNSAEKG 995 >UniRef50_A8UTH4 Cytoplasmic axial filament protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UTH4_9AQUI Length = 466 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 134/463 (28%), Positives = 242/463 (52%), Gaps = 15/463 (3%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 R++I+A++ L L+ + + ++ +E G ++ +I+KG++ R SL+ AFVD G Sbjct: 4 RLIISASRNLVL-TFLLKEKEISEIKVEKRGKKRLSGSIFKGRVKRFAKSLDGAFVDIGI 62 Query: 63 ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISL 122 + +LPLK + S + EG E++VQ+ +E +KGA +T IS+ Sbjct: 63 GKEAYLPLKAYENTALEEDESCP-------LPEEGSEILVQMKREPIEDKGAKVTCRISI 115 Query: 123 AGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQW 182 G +LV +P + + +S +IE ++R + L L E G+IVRT+ + E L Sbjct: 116 PGKFLVYLPTSKKV-FVSSKIEDENRRAFFKELFERALDE-EGVIVRTSAEFATEEELLA 173 Query: 183 DLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQ 242 +L W+ IK+ + S L+++E V+ RDY D+ EI++D+ ++ Sbjct: 174 ELQKLRNTWKEIKERSASIKQ-GLVYEEVPAYVQLVRDYWN-DVSEIIVDDRELWSELLA 231 Query: 243 HIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAI 302 + + P+ K++ F Y ++ + F R V L +GG I+I+ TEA+T I Sbjct: 232 ELESYF-PELVGKVRYVKNISVFFKKYGLDKALTRLFARYVWLRNGGYIIIEETEAMTVI 290 Query: 303 DINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENR 362 D+NS + G +E+ A TNLEAA+EI RQ++LRD+GG+++IDFIDM +++ + R Sbjct: 291 DVNSG-SGCGDTLEDNALQTNLEAAEEIVRQIKLRDIGGIVIIDFIDMKNKKNREKLVKR 349 Query: 363 LREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLS 422 ++E + +++ + I+ GLLE++R++ +PS+ CP C G G ++ E + Sbjct: 350 VKELFADEGSKVHVYGITHLGLLELTRKKETPSVTRLLSINCPYCKGKGYIKSPEVVLYE 409 Query: 423 ILRLIEEEALKENTQEVHAIVPVPIASYL-LNEKRSAVNAIET 464 I + I + V+ + + + + + R V+ E Sbjct: 410 IEKEINYFKGRYLEVRVNPALKERVENLIEKSNMRQWVSVKEE 452 >UniRef50_A8F3K6 Ribonuclease, Rne/Rng family n=1 Tax=Thermotoga lettingae TMO RepID=A8F3K6_THELT Length = 470 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 142/451 (31%), Positives = 234/451 (51%), Gaps = 19/451 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M L+ Q+E++ VA++ L ++ E E NIY G+I +I P L AAFV+ Sbjct: 1 MANQLVINIQEEKVNVAILSDGVLQEIFSE--EDESLSGNIYVGRIEKIIPGLNAAFVNI 58 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+GFL L +I ++Y K ++EG +++VQ+ + G KG LT I Sbjct: 59 GGNRNGFLKLTDITKQYISE--------VTKSPVKEGIKILVQVKHDAIGTKGPQLTGKI 110 Query: 121 SLAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 SLAG +LV P + G+S+++ E +R L+E SL + G+++RTA E Sbjct: 111 SLAGRFLVYFP-LSKVRGVSKKVQEPKERVRLQELSRSLA--KNDGVVIRTAAEFVPEEY 167 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + + + W + ++ + L+ +E + R+ L +DI E+ ++ ++ E Sbjct: 168 VAEEFNQLKSEWRKVLQSFKRARKIKLLRREPTTVDYILRERLNKDIDEVHVNTREIYEK 227 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 ++ + K +Y E LF I SQI +R + LPSGG I +D+TEA+ Sbjct: 228 VKE-----VSKRLAKKPMIYFFEGDLFDKLCIYSQIGQLQERIIHLPSGGYIALDTTEAM 282 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T D+NSA + + A+ TN+EAA EIARQLRLR++GG++++DFIDM + + Sbjct: 283 TVFDVNSASFVSEKNHADLAYKTNVEAAYEIARQLRLRNIGGIVIVDFIDMPSKTYYDRL 342 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 L++A+R D A I++ ++ GLLEM+R+R SPS+ + CP C GTG V + Sbjct: 343 TKELQQAIRNDSAHIELIGFTKLGLLEMTRKRRSPSIDQLLFSGCPICKGTGRVVSPHIV 402 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASY 450 ++ + + V I+ ++ Y Sbjct: 403 VRRVINELSKIENISEYSSVKVILHQRLSGY 433 >UniRef50_B3QZC2 Ribonuclease, Rne/Rng family n=12 Tax=Chlorobiaceae RepID=B3QZC2_CHLT3 Length = 582 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 133/417 (31%), Positives = 215/417 (51%), Gaps = 13/417 (3%) Query: 90 IKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRT 149 I L+ ++VQ+ KE NKGA LT+ I++AG ++VL+P IS+RI Sbjct: 170 IASKLKPNDSILVQVIKEPISNKGARLTSDITIAGRFMVLLPFGSGHLAISKRIVNRRER 229 Query: 150 ELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQ 209 + + LP+G G IVRT + L+ DL L W+ I++ + P LI + Sbjct: 230 RRLKGIVRSILPKGFGAIVRTVAEEQDELLLKTDLEKLLAKWKQIEETVKDAKPPKLIFK 289 Query: 210 ESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHY 269 E +I RD L +D+ E++ ++ + + + P+ ++ Y G++PLF Y Sbjct: 290 EDTMISSVLRDSLTEDVTELVTNSQHIYKETLTFVR-WAAPEMEKRVSHYKGKLPLFESY 348 Query: 270 QIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADE 329 I +ES F R+V L SGG ++I+ TEA+ ID+NS R + EE + TNLEAA E Sbjct: 349 GIAKDVESIFSRKVWLKSGGYLIIEHTEAMVVIDVNSGRYAAKREQEENSLKTNLEAAKE 408 Query: 330 IARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSR 389 I+RQLRLRD+GG+IV+DFID+ ++ R V + ++ R+DRA+ I +S FGL++++R Sbjct: 409 ISRQLRLRDIGGIIVVDFIDLLDEKNARKVYDTMKTEFRRDRAKSNILPMSEFGLMQITR 468 Query: 390 QRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENT--QEVHAIVPVPI 447 +R+ PSL + CP C G+G V+ + I R + + AL N + + V + Sbjct: 469 ERIRPSLMQRMGDECPACGGSGVVQARHTTIHQINRWLRKYALNGNHAFERLDLYVSQTV 528 Query: 448 ASYL----LNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSY 500 A L +N + Q + + +D + + + + K T Y Sbjct: 529 AQPLFQDAMNPQWKWFL-----QHLLFVNVKTDDSLRSDDFRFY-LSKNHSDVTTEY 579 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 24/74 (32%), Positives = 43/74 (58%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 +K+ L+ +E++VALV+ RL ++ IE P + +IY G++ ++ L+AAF+D Sbjct: 4 VKKQLLMNKSGDEVQVALVEDGRLAEVFIERPESTRNVGDIYLGRVQKVVEGLQAAFIDI 63 Query: 61 GAERHGFLPLKEIA 74 G GFL ++ Sbjct: 64 GHSSDGFLHFSDVG 77 >UniRef50_C9M9G5 Ribonuclease G n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M9G5_9BACT Length = 495 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 152/516 (29%), Positives = 256/516 (49%), Gaps = 27/516 (5%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 ++ N +EE RVA+V+ RL DL +E Q+ +IY ++ I + AAF++ G Sbjct: 6 KIYANMLDEEERRVAVVEDGRLRDLYVEHGRPVQQSGDIYLARVESIVSGMNAAFLNLGD 65 Query: 63 ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISL 122 R+GFL L + + E E+IVQ+ K R +KGA +T +SL Sbjct: 66 GRNGFLYLADAKGF----------------SVHENGELIVQVTKTPRRSKGARVTPQVSL 109 Query: 123 AGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQ 181 G + V +P G+SR+I DR L+ + S+ E G+I+RTA + E L Sbjct: 110 PGRFFVYLPFAGSV-GVSRKIGSAKDRQRLRALVGSV---ERGGVIIRTAAQDAADEDLA 165 Query: 182 WDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELAR 241 DL+ + WE I+++A+ R +P ++ QE ++RA RD L I E++ D+ + + + Sbjct: 166 ADLAQLQEQWERIEQSAKLRMSPGVLWQEDGFLIRALRDELAHHISEVVTDSREAFDAVK 225 Query: 242 QHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTA 301 ++A G +S ++ L I LF + + +IES + +V LPSGG +VID TEALTA Sbjct: 226 GFVSAAGA-GWSGQVSLLEKGIDLFEYCGLTQEIESLIRPKVLLPSGGYLVIDQTEALTA 284 Query: 302 IDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVEN 361 ID+NS + G + T TNLEAA EIARQ+RLR +GG++++DFIDM + AV + Sbjct: 285 IDVNSGKCVDGSSLSATVKTTNLEAAREIARQIRLRAIGGIVIVDFIDMESEADRTAVLD 344 Query: 362 RLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSL 421 L++A D ++++ ++ GL E++R+R L C C G +E+L+ Sbjct: 345 ALKDASAADPNKVRVYGMTSLGLAEVTRKRTRLDLRSQMTQPCSSCC-EGRTWKDEALAA 403 Query: 422 SILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMET 481 S+ R + + ++ + +A + + + E G R V+ Sbjct: 404 SVKRRLRKAFAGSSSGWALVAMNDELAQIVA---QKWLKGWEETF-GRRIVLRGLPGASR 459 Query: 482 PHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEE 517 + + + + T + + E + + + Sbjct: 460 TDWRIEALGDSRKILTQAQSPWEREEPSRVYRTTDS 495 >UniRef50_A5CEM7 Ribonuclease E n=2 Tax=Orientia tsutsugamushi RepID=A5CEM7_ORITB Length = 675 Score = 452 bits (1162), Expect = e-125, Method: Composition-based stats. Identities = 162/457 (35%), Positives = 256/457 (56%), Gaps = 5/457 (1%) Query: 69 PLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLV 128 P+ + + H + I+DV+ GQ V+VQ KE RGNK A+ TT+ISL+G Y + Sbjct: 146 PVSKQNSQEIAEFLPPHKQQEIQDVISSGQIVLVQATKESRGNKNASFTTYISLSGKYCI 205 Query: 129 LMPNNPRAGGISRRIEG-DDRTELKEALASL--ELPEGMGLIVRTAGVGKSAEALQWDLS 185 L PN GISRRI +DR +LK + +L ++ + +I+RTAG ++A ++ D + Sbjct: 206 LTPNLSNHSGISRRITNSEDRKQLKTIVGNLISKITKTSSVIIRTAGSRRTAYEIKKDFN 265 Query: 186 FRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIA 245 + LK W I A+ P I+ E+++I + D + E++I + A + + Sbjct: 266 YLLKLWNEIINTAKQAKPPAFIYVENDIIRKTILDIYNISVQEMIIQGKAAYDYAVKFMN 325 Query: 246 ALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDIN 305 A+ P KIK + IP+F+ Y +E Q+ + ++ V LPSGG IVI+ TEAL AID+N Sbjct: 326 AI-LPSEVHKIKEHKSTIPIFAQYNLEEQLATLYKPIVTLPSGGYIVINPTEALIAIDVN 384 Query: 306 SARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLRE 365 S + T +IEETA TNLEAA EI+ Q++LR+L GLI IDFI MT ++ + +E ++ Sbjct: 385 SGKDTSEQNIEETAVKTNLEAAKEISHQIKLRNLSGLITIDFICMTDSKNHKLIEKSFKK 444 Query: 366 AVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILR 425 + +D+A+IQ+ I+ FG+L++SRQRL PS ES+ +C CSG G VR ES ++ ILR Sbjct: 445 YLAKDKAKIQVDSINSFGVLQLSRQRLRPSFLESNSVICSHCSGKGIVRAEESNAMIILR 504 Query: 426 LIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYH 485 IE E + ++ + +Y+LN KR+ + IE + + V+ + Q + + Sbjct: 505 TIENEIHTSKSNIINVYAHLHSVTYILNNKRTEIADIEKKYN-VQLKFYNDFQSTSDSFS 563 Query: 486 VLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERK 522 + +V T + + A L + E A + Sbjct: 564 IEKVTLSASTTKSALTEQPVVTSAKLLENIENPASQA 600 Score = 101 bits (252), Expect = 1e-19, Method: Composition-based stats. Identities = 41/111 (36%), Positives = 61/111 (54%), Gaps = 10/111 (9%) Query: 2 KRMLINATQQEELRVALVDGQ-RLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 KR+L++A+ E RVAL+D R+ +++ E+ K NIY IT+IEPSL+AAF+DY Sbjct: 3 KRILVDASYPNETRVALIDNNCRIAEIEYETASKHLIKGNIYLATITKIEPSLQAAFIDY 62 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGN 111 + GFLP EI +Y+ N+ + L +V+I EE Sbjct: 63 SNGKSGFLPFSEIHPDYY---------NNVTNSLPFDTVPLVEITSEEIKE 104 >UniRef50_A9VIS0 Ribonuclease, Rne/Rng family n=78 Tax=Bacillus RepID=A9VIS0_BACWK Length = 469 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 130/441 (29%), Positives = 232/441 (52%), Gaps = 27/441 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 +K + IN T E+ RVA+ + Q++ +L + ++ +IY G+I R + AAFV+ Sbjct: 8 LKTLYINYTGSEK-RVAIEEKQKIVELLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNI 66 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G E+H +L ++ Y + EGQ ++VQ+ KE KG LT I Sbjct: 67 GLEKHAYLSFDDVPSSYR---------------IHEGQAILVQVVKEAIDTKGPKLTAKI 111 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 G Y+V MP + +SR+I+ + R ++ L +E+ G I R+A + + + Sbjct: 112 EFTGKYVVYMPYDEM-RAVSRKIKNNKR---RQQLLGIEVEGTGGYIFRSASEKGTIDEI 167 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q ++ + +E +K+ + AP L+HQ + + R F++ + I +I++D +++ Sbjct: 168 QAEMQGLQQLYEELKRKEDQGKAPLLLHQPATFLDRVFQENPIETIEKIVVDTRSIVKEL 227 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + + ++ Y + +F+H+ I+ +IE A Q+ V LP+G ++++ E +T Sbjct: 228 EEKVG-------KERVAFYNEKSSMFNHFGIDREIEKALQKIVWLPNGAYLIVEQMETMT 280 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ID+N+ + T ++++T F TN AA+EIARQLRLRD+GG+I+IDFI+M + V Sbjct: 281 VIDVNTGKFTGKQNLQDTVFRTNEMAAEEIARQLRLRDIGGMILIDFINMKRREDKEKVR 340 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 RL A++ DR ++ + G+LEM+R+R SL + C C TG V NE+++ Sbjct: 341 ERLMIALQDDRTYTRVLGFTELGILEMTRKRKKHSLRDVLLEECAPCKATGYVISNETIA 400 Query: 421 LSILRLIEEEALKENTQEVHA 441 + R + E+ + A Sbjct: 401 YELERELITYGNIEDEAVLIA 421 >UniRef50_Q7U4C5 Ribonuclease E n=16 Tax=cellular organisms RepID=Q7U4C5_SYNPX Length = 663 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 144/415 (34%), Positives = 228/415 (54%), Gaps = 16/415 (3%) Query: 1 MKRMLINATQQEELRVA-LVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 M + ++ A E+LR+A ++ +R+ +L + + ++Y G + + P ++AAFV+ Sbjct: 14 MPQQIVIA---EQLRIAAVLTDERVDELIVAQG--RYQIGDVYLGTVENVLPGIDAAFVN 68 Query: 60 YG-AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 G +E++GF+ + ++ G I ++L Q+V+VQ+ KE G KG LT Sbjct: 69 IGESEKNGFIHVTDLGPLRL-----KKGSAGITELLEPRQKVLVQVMKEPTGTKGPRLTG 123 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAE 178 ++L G YLVL P+ ISRRI + AL L P G GL++RT G + + Sbjct: 124 NLALPGRYLVLQPHGQGVN-ISRRISSEAERNRLRALGVLIKPPGAGLLIRTEADGIAED 182 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 L DL L+ WEAI++AAE+ P L++++ + I R RD+ D+ +++D P + Sbjct: 183 QLIDDLESLLRQWEAIQQAAETAAPPVLLNRDEDFINRILRDHTSTDLVRVVVDEPAAVA 242 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 + A ++ ++ L H+++ + I A + V LPSGG ++I+ TEA Sbjct: 243 RVSSFLGAEADKVL---VEAHSEPSELLEHFKVNAAIRDALKPRVDLPSGGYVIIEPTEA 299 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 LT ID+NS TR + ET TN EAA EIARQL+LR++GG+I+IDFIDM R Q Sbjct: 300 LTVIDVNSGSFTRSANARETVLWTNCEAAIEIARQLKLRNIGGVIIIDFIDMDSRRDQLQ 359 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 + AVR D AR QI+ ++ GL+E++R+R ++ E CP C G G V Sbjct: 360 LLEHFTTAVRDDAARPQIAQLTELGLVELTRKRQGQNIYELFGRACPSCGGLGHV 414 >UniRef50_C5EUP6 Ribonuclease G n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EUP6_9FIRM Length = 393 Score = 450 bits (1157), Expect = e-124, Method: Composition-based stats. Identities = 118/404 (29%), Positives = 193/404 (47%), Gaps = 15/404 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M R LI + + A V G R+ L +E NIY GK+ ++ ++ AAFVD Sbjct: 1 MDR-LIVTQLNDRVCTAAVSGSRITQLMMEPEDSSSLLNNIYIGKVQKVVGNINAAFVDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R G+ L E F + + L+ G E++VQ+ ++ K LT + Sbjct: 60 GGGRTGYYSLDENKEHLFVSPSTGK--------LKAGDEIVVQVSRDAVKTKAPVLTGKL 111 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEG--MGLIVRTAGVGKSA 177 + G Y VL G S +I + + ++ L +G G+IVRT G G + Sbjct: 112 AFTGRYCVLTAGKTGV-GFSNKIGDNKYKARVRSMLNEALAEDGDRFGIIVRTNGAGATD 170 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 E L + + + K A R I++ + A RD + I+ D P Sbjct: 171 EVLLQEYRQLKDMYLKLSKEASCRTCYSCIYRALPGYIAAIRDSYSGTLDGIVTDIPAYY 230 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDST 296 E + ++ D + K+ LY ++ PL Y ++S +E A + V L SGG +VI+ T Sbjct: 231 EELKDYLEKYQAED-ADKLTLYEDKLLPLSKLYSLDSALEHALNKHVWLKSGGYLVIEPT 289 Query: 297 EALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 EA+ ID+N+ + + +++T N+EAADEI RQLRLR+L G+I+IDFIDM + Sbjct: 290 EAMVVIDVNTGKYSGKKKMQDTICRINMEAADEIGRQLRLRNLSGIILIDFIDMEREEDR 349 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESS 400 + L + V +D + + ++R L+E++R+++ L E Sbjct: 350 EMLMRHLGDVVSKDPVKTTVVDMTRLNLVEVTRKKVRKPLYEQI 393 >UniRef50_D0JBK5 Ribonuclease G n=2 Tax=Blattabacterium RepID=D0JBK5_BLASB Length = 510 Score = 449 bits (1156), Expect = e-124, Method: Composition-based stats. Identities = 144/520 (27%), Positives = 248/520 (47%), Gaps = 47/520 (9%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + LI +++E+ +AL++ +L +L + + +IY G + +I L AA +D Sbjct: 1 MNKELIINAEEQEVEIALLEEGQLLELHRDVFNKKFSVGDIYLGIVKKILYGLNAAIIDI 60 Query: 61 GAERHGFLPLKEIA-------------REYFPANYSAHGRPN-IKDVLREGQEVIVQIDK 106 G + FL ++ R++F N+ N I +L GQ ++VQI K Sbjct: 61 GHSKGAFLHYNDLGFQINKILELISMNRKFFSNNFEKKENRNSIDKILHPGQRILVQISK 120 Query: 107 EERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEGMG 165 E NKG LT+ I + G YL+L+P + + IS++I+ + + L + ++ P G Sbjct: 121 EPISNKGPKLTSKICIPGRYLILIPFSEKI-SISKKIKNAKEESRLLSYIRKIK-PHEFG 178 Query: 166 LIVRTAGVGKSAEALQWDLSFRLKHWEA-IKKAAESRPAPFLIHQESNVIVRAFRDYLRQ 224 +I+RTA K E L +L F +K W+ +K + P P + E + RD Sbjct: 179 IIIRTASHNKREEVLNEELIFLIKKWKKTLKNLIKLPPPPVRVLSEISKTSCLLRDTFND 238 Query: 225 DIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVR 284 D I +N + + +++ + P+ + IK Y G IP+F Y IE QI+ R V Sbjct: 239 DFKSIYCNNNFLCQEIHSYLSLIA-PEKINIIKYYKGNIPIFEKYGIEKQIQIFLGRNVP 297 Query: 285 LPSGGSIVIDSTEALTAIDINSA------RATRGGDIEETAFNTNLEAADEIARQLRLRD 338 L +G ++I+ TEAL ID+NS + + + NL AA EIARQLRLRD Sbjct: 298 LENGAYLIIEHTEALHVIDVNSGMNNHMKKNCTESERIDNILKINLLAATEIARQLRLRD 357 Query: 339 LGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGE 398 +GG+IV+DFIDM+ ++ + L+E ++ DRA+ +I ++FGL++ +R R+ P L Sbjct: 358 MGGIIVVDFIDMSEPIQRKQLYEHLKEKMKNDRAKHKILPPNKFGLVQFTRHRVRPELKV 417 Query: 399 SSHHVCPRCSGTGTVRDNESLSLSILRL---IEEEALKENTQEVHAIVPVPIASYLLNE- 454 + ++ + +S I RL +E +N Q++ + +++YL Sbjct: 418 NINNE----------KSKDSPIHYIHRLEFVLESIIKNKNHQKIQLHIHSFVSAYLKKGF 467 Query: 455 ---KRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRK 491 ++ + + I+P D Y + Sbjct: 468 PSIQQKWLLKYKKW-----IQIIPRDSFGYTEYKIFNENH 502 >UniRef50_A5I670 Ribonuclease G n=12 Tax=Clostridium RepID=A5I670_CLOBH Length = 479 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 119/475 (25%), Positives = 236/475 (49%), Gaps = 23/475 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK + I Q+E +R+ L + + +L IE + IY G + I P++++AFVD Sbjct: 1 MKEIFI-ERQRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++ +L L + +++G ++V++ KE+ KG +T I Sbjct: 60 GWNKNAYLYLDKKFNNT---------------HIKKGDYILVEVVKEDLNKKGPKVTNAI 104 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ++ G Y VL N S +I+ + RTE++ ++ P+ +G+++RT + S E Sbjct: 105 TIPGRYTVLQILNNEIT-FSHKIKDEKIRTEIQ---NNIVKPKDVGILIRTEAINTSIEN 160 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + ++ K + ++ + ++ + ++ Q ++ + RD L +I +I ++ + Sbjct: 161 INNEIRRLYKIYSSLIEKSKYKMNTGVLFQNGGIVGKILRDKLNDNISKIYLNCREDYVY 220 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + + G + K+ +Y GE L +Y IE +I S ++V L GG I+ID TEA+ Sbjct: 221 VSEFLKEYGENNI--KLDIYEGERNLLDYYAIEKEILSLRNKKVYLNCGGYIIIDKTEAM 278 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +D+NS + +G +E+T F TN+EAADEI Q+ LR+L G+IVIDFIDM + V Sbjct: 279 YVVDVNSGKNVKGNSMEKTIFTTNMEAADEICNQIILRNLNGIIVIDFIDMDNENLKEKV 338 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 ++L++ +++D+ + + + L++++R+R ++ + C CSG G++ + Sbjct: 339 LDKLKQGLKRDKNKSVVYPFTELNLVQIARKRQGKTIYDYIEQPCKCCSGKGSIVSFTYM 398 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIV 474 L I I ++++ + Y+ + ++ IE + + + Sbjct: 399 KLLIRNEIINILNMREIKDIYIELNKRYKDYIDKNRIQFISEIEALEKNIYINYI 453 >UniRef50_Q1V2D3 Ribonuclease E/G n=5 Tax=Bacteria RepID=Q1V2D3_PELUB Length = 619 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 165/428 (38%), Positives = 252/428 (58%), Gaps = 14/428 (3%) Query: 79 PANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGG 138 P R I++V++ Q +++Q+ K+ERG KGAAL+TFIS+AG Y+VLMPN P+ GG Sbjct: 167 PETRFRSKRYKIQEVIKPNQVILIQVLKDERGQKGAALSTFISIAGKYIVLMPNTPKGGG 226 Query: 139 ISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKA 197 ISR+I +R +++ L + +P+ MGLIVRTAG K+ + DL +K W IK+ Sbjct: 227 ISRKIFNPGERKKIRTILNDIVIPKEMGLIVRTAGSNKTKNDIDHDLQTLIKTWNEIKEN 286 Query: 198 AESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIK 257 A + AP LIHQES++I R RD + I+I+ + + A+ + L P KIK Sbjct: 287 ALNSIAPSLIHQESDIIKRTLRDMYDESTNSIVIEGNEGYKKAQNFMK-LMMPSHVKKIK 345 Query: 258 LYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEE 317 Y ++PLF IE ++ + E++L SGG +VI+ TEAL +IDINS + + ++E Sbjct: 346 KYREKVPLFFKENIEEKLNQIYDSEIKLKSGGYLVINPTEALVSIDINSGSSIKQKNVES 405 Query: 318 TAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQIS 377 TA +TNLEAA+EI+RQ+++RDL GLI+IDFIDM ++R VE +L+E R DRARIQI Sbjct: 406 TALDTNLEAAEEISRQIKIRDLSGLIIIDFIDMLSFGNRRLVERKLKEQCRTDRARIQIG 465 Query: 378 HISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQ 437 IS FGLLEMSRQRL S + +ES ++ IL+L+E +A+ + Sbjct: 466 RISTFGLLEMSRQRLRESAVKWKVT-----------LTDESFAMKILKLVEVKAVLTKAK 514 Query: 438 EVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPT 497 V + I+ ++ + E + + ++ I+ ++ + P Y + K ++T Sbjct: 515 FVELKICEKISDFMKENFIEDLKYFEEK-NLIKIDIIADNSLIIPEYIIDLQNKTKKTIE 573 Query: 498 LSYMLPKL 505 + + KL Sbjct: 574 IVQHIEKL 581 Score = 91.4 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 34/82 (41%), Positives = 51/82 (62%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K + I+A+ E RV L G+ + D + E + K NIY GK++R+EPSL+AAF+D+G Sbjct: 3 KNLYIDASHPNETRVVLKSGENIEDYEYEGLKNNLIKNNIYLGKVSRVEPSLQAAFIDFG 62 Query: 62 AERHGFLPLKEIAREYFPANYS 83 +RHGFL +I +Y+ S Sbjct: 63 RDRHGFLSFNDIQSDYYQIPQS 84 >UniRef50_A5WCI8 RNAse G n=4 Tax=Moraxellaceae RepID=A5WCI8_PSYWF Length = 613 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 135/389 (34%), Positives = 212/389 (54%), Gaps = 10/389 (2%) Query: 83 SAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRR 142 I+ L EGQ+++VQ+ K++ G KGA LTT ISL YLV +P++ GIS+R Sbjct: 202 EPPRHELIQYRLHEGQKILVQVTKDQLGTKGARLTTNISLPSRYLVYLPSSEHI-GISQR 260 Query: 143 IEGDD-RTELKEALASLELPEG--MGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKA-- 197 I+ ++ R LK L +L GLI RTA L+ D+ + ++ W I+ Sbjct: 261 IDNEEERHRLKTELGALMQTVNLTGGLIARTAAERVPVAKLEEDIYYLVQLWRTIQARKE 320 Query: 198 --AESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSK 255 A S + LI+QE ++ +R+ RD + D ++++D+ + RQ P + Sbjct: 321 ASAGSGQSAVLIYQELSLPLRSIRDLVHPDTEKVIVDHEGMYNEVRQFAKEFV-PFIYPR 379 Query: 256 IKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDI 315 I Y+GE PLF +++E + A +R V L SGG ++ID TEA+T ID+N+ G + Sbjct: 380 ILPYSGEQPLFDVHRVEEDLRDALKRRVDLKSGGYLIIDQTEAMTTIDVNTGSFVGGRSL 439 Query: 316 EETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQ 375 E+T + TNLEA IARQLRLR+LGG+I++DFIDM +H+ V L+ + QD A+ + Sbjct: 440 EDTVYKTNLEATHAIARQLRLRNLGGIIILDFIDMLEQQHKDDVLENLQYQLSQDYAKTK 499 Query: 376 ISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKEN 435 I+ +S GL+EM+R+R SL + C C G G ++ E++ I R I A N Sbjct: 500 ITQVSELGLVEMTRKRTRESLEQQLCEPCKTCEGKGFIKTAETVCFEIFREIMRCARTYN 559 Query: 436 T-QEVHAIVPVPIASYLLNEKRSAVNAIE 463 + ++ + + LL+ + V +E Sbjct: 560 SPKKFTVVAHASVIDLLLSSEADTVADLE 588 Score = 100 bits (250), Expect = 2e-19, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 1/101 (0%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M L+ E RVA++D + ++ IE NIY G + R+ P ++AAFV+ Sbjct: 1 MSEELLINVSPMESRVAVLDNGVVSEVYIERHNKLGLVGNIYLGTVVRVLPGMQAAFVEI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVI 101 G R FL + ++ R PA +A P I+ ++ V+ Sbjct: 61 GQSRTAFLHVNDMRRIARPA-PTADKAPEIRHNAKQEPTVL 100 >UniRef50_C3WSU7 Ribonuclease G n=6 Tax=Fusobacterium RepID=C3WSU7_9FUSO Length = 458 Score = 446 bits (1146), Expect = e-123, Method: Composition-based stats. Identities = 136/466 (29%), Positives = 227/466 (48%), Gaps = 27/466 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK+ LI + E ++AL++ +L ++ IE ++ NIYKGK+ I + E FVD Sbjct: 1 MKKYLILSKSVYETKLALLEDNKLDEMYIERNNKKEITGNIYKGKVVDILNNGEIIFVDI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G E++ FL N + NI D ++IVQ + E R KGA LT Sbjct: 61 GLEKNAFLSF---------ENKKDISKYNIDD------KLIVQAETEPRDEKGAKLTLDY 105 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 S+ G LVL+P + IS++I+ ++ LK ++ L GLI+RT GKS E Sbjct: 106 SINGENLVLLP-KSKNLSISKKIKDIEEVNRLK----NIFLSTDNGLILRTNSEGKSEEN 160 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 L + I K E L++ + N I++ + +ID+ + + Sbjct: 161 LLEEYRRLENIDNQINKDFEKINV-GLLY-DVNSILKKVVALFDDSTEKFIIDDEHIFKE 218 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + + +G+ D K++ Y + +F +Y I SQIE A R+V L SG I+I+ TEAL Sbjct: 219 IKYLLEEIGKKDLIKKLRKYFKDEDIFEYYNINSQIERALDRKVYLDSGAYIIIEKTEAL 278 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +ID+N+ + T +E F TNLEA EIARQ++LR+L G+I+IDFIDM +++ + Sbjct: 279 ISIDVNTGQNTGNKTSQEIIFQTNLEATKEIARQIKLRNLAGIIIIDFIDMKKFSNKKRI 338 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 + ++ + +D+ I + GL++ +R+R L C C G G + + Sbjct: 339 LEKFKKYLSKDKVEINSVEYTNLGLIQFTRKRQGKELALYYREKCQYCEGIGYFLSKDRI 398 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIA----SYLLNEKRSAVNA 461 L++L + + ++ +++ I Y+ N K + Sbjct: 399 ILNLLEDLNNQIKSQDIKKIVIRTKKDIIKELNKYIDNNKIEYIED 444 >UniRef50_A9ESZ7 Ribonuclease G n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9ESZ7_SORC5 Length = 907 Score = 444 bits (1143), Expect = e-123, Method: Composition-based stats. Identities = 152/418 (36%), Positives = 239/418 (57%), Gaps = 8/418 (1%) Query: 74 AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 +R + I++V+REGQEVIVQ+ KE G KGA +T+ ISL G Y+V +P Sbjct: 492 SRSWQNEPPRISKSTPIREVVREGQEVIVQVSKEPIGTKGARVTSHISLPGRYVVYLPTV 551 Query: 134 PRAGGISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWE 192 GIS+RI +R+ L++A+ +++ P+G GLIVRT G + + L+ D+ + ++ W Sbjct: 552 DHI-GISKRIGSEKERSRLRDAIEAMKPPQG-GLIVRTLAEGLTKKQLKADVGYLVRLWG 609 Query: 193 AIKKAAESR-PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPD 251 + K ES AP +++ E +++++ RD DI +I+ID+ + R+ + P+ Sbjct: 610 EVAKKRESGVRAPAVLYTELDLVLKTARDLFTDDIEKIVIDDREEYIRLRRFVEMF-MPE 668 Query: 252 FSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATR 311 + ++LY G P+F Y IE +I+ A R+V LPSGG ++ID EALTAID+N+ R Sbjct: 669 RADAVELYEGTEPIFDAYGIEDEIQRALSRKVPLPSGGHLIIDQAEALTAIDVNTGRFVG 728 Query: 312 GG--DIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQ 369 G D+EET TNLEA +EIA QLR R++GGLI++D IDM +++ V RL E + + Sbjct: 729 KGSKDLEETILTTNLEAVEEIAYQLRFRNIGGLIILDLIDMERAQNREKVRRRLEELLSR 788 Query: 370 DRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEE 429 D+A+ ++ IS GL+EM+R+R SLG + C C GTG ++ ++++ ILR I Sbjct: 789 DKAKTTLNRISDLGLIEMTRKRTRESLGRTILEPCFYCDGTGQLQSKQTVAYEILRQIRR 848 Query: 430 EALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVL 487 E + V + L N++R AV E R R +VP + + + Sbjct: 849 ERMNLPGYSVVVNAHPAVIDLLKNDERIAVQEAE-RLFQRRIDLVPRKEYHLEQFDLQ 905 Score = 93.7 bits (231), Expect = 3e-17, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 50/91 (54%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K +L+ E RVAL++ + +L +E + NIY GK++R+ P ++AAF+D G Sbjct: 3 KNLLVINVDIRETRVALIENGIIAELHLERESSKGTLGNIYLGKVSRVLPGMQAAFIDVG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKD 92 ER FL ++++ R Y A R +++ Sbjct: 63 LERAAFLHVEDLIRPDDFEAYLAGHRRTVEE 93 Score = 48.6 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 52/282 (18%), Positives = 88/282 (31%), Gaps = 10/282 (3%) Query: 473 IVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEA---MALPSEEEFAERKRPEQPAL 529 I +D+++ P Y V E ++ + H EA A E E P++PA Sbjct: 246 IEDDDELDAPGYDVEPASPPPEDAADAWSAAEEHPEALSNTADSGETGAQEASAPDEPAA 305 Query: 530 ATFAMP-DVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEET 588 A + A + P A + R ++ + Sbjct: 306 HGAAGDWPAGEEASAPPVPEAAAAASGDDVPPAARARSGRARGRREARVRRSGRTRDRRA 365 Query: 589 KPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQ 648 A A E ++ R PR+ R R R R + RE R R+ ++ Sbjct: 366 NLEGGAALAEAAPAEAREGREAPREGREAPREGREAPREGRQAPREGREAPREGRQAPRE 425 Query: 649 QTAETRESRQQAEVTEKARTADEQQAP-----RRERSRRRNDDKRQAQQEAKALNVEEQS 703 RE R+ E + R + R R R R+ +E + + Sbjct: 426 GREAPREGREGREAPREGRDRGGKGQQGGREGRDREQRGREQRTRERGREQSRDGKGKSA 485 Query: 704 VQETEQEERVRPVQPR-RKQRQLNQKVRYEQSVAEEAVVAPV 744 + + + PR K + + VR Q V + P+ Sbjct: 486 ARGQQSSRSWQNEPPRISKSTPIREVVREGQEVIVQVSKEPI 527 >UniRef50_A8RTZ4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RTZ4_9CLOT Length = 385 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 111/403 (27%), Positives = 203/403 (50%), Gaps = 21/403 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + L+ + +++ A+V ++ L +E + NIY GK+ ++ ++ AAF+D Sbjct: 1 MDK-LVVTRRGDKVCTAVVSDGKVSQLMLEPDTADSLLGNIYIGKVQKVVSNINAAFIDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G G+ L+E + + L+ G E++VQ+ K+ +K +T + Sbjct: 60 GPGCTGYYSLQERWKP---------------ERLKTGDELVVQVSKDAVKSKAPVVTERL 104 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALA-SLELPEGMGLIVRTAGVGKSAE 178 S G Y VL G S +I + L+E L L + +G+IVRT V Sbjct: 105 SFTGRYCVLTVGKTGI-GFSAKIRDASYKARLRELLECDLAGTKDLGIIVRTNAVTVEEC 163 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 A++ +L+ ++ W+ + A R +++ + A RD + EI+ D P+ Sbjct: 164 AVREELAELMRTWQRLSAEAGCRVCYSCLYRALPGYIAAIRDSFGGTLEEIITDVPEYHR 223 Query: 239 LARQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 + ++ + D + ++ LY + PL Y +E+ E A + V L SGG +VI+ TE Sbjct: 224 ELKAYLEMCQKED-AGRLTLYEDSLLPLGKLYSLETAFEKALGKNVWLKSGGYLVIEPTE 282 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 A+T ID+N+ + + +++T + N+EAADEI RQ+RLR+L G+I++DFIDM ++ Sbjct: 283 AMTVIDVNTGKYSGRKKMQDTIYKINMEAADEIGRQIRLRNLSGIIIVDFIDMEREEDRK 342 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESS 400 A+ L E V +D + + ++ L+E++R+++ L E Sbjct: 343 ALLAHLVEVVSRDPVKTTVVDMTALNLVELTRKKVRKPLHEQV 385 >UniRef50_Q1IRN1 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRN1_ACIBL Length = 1031 Score = 443 bits (1139), Expect = e-122, Method: Composition-based stats. Identities = 140/409 (34%), Positives = 215/409 (52%), Gaps = 5/409 (1%) Query: 80 ANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGI 139 N + P I D+L+EGQE++VQI KE G KGA +T+ I+L G +LV MP G+ Sbjct: 625 KNMQSRNTPLISDLLKEGQEILVQIAKEPIGKKGARITSHIALPGRFLVYMPTVNHV-GV 683 Query: 140 SRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAA 198 SR+I ++R LK ++S G IVRTA + L+ D+ F W IK + Sbjct: 684 SRKIASDEERQRLKRIVSSERENGHGGFIVRTAAANVKEDELRADIRFLKHLWSEIKGRS 743 Query: 199 ESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKL 258 + +P LI+ + N++ R RD + D I +DN E + + +P +IKL Sbjct: 744 DKSKSPALIYHDLNLVERVLRDQVTSDFTTIWVDNESEYERVLRFASRF-QPSLVRRIKL 802 Query: 259 YTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGD-IEE 317 YT PLF + I+ +I A + +V L SGG IVI+ TEAL AIDIN+ + +E+ Sbjct: 803 YTKNTPLFEEFGIQEEINKALKAKVWLKSGGYIVINQTEALVAIDINTGKYVGKTTRLED 862 Query: 318 TAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQIS 377 T TN++A EI RQ+RLRDLGG+IVIDFIDM ++++ V L EA++ DRA ++ Sbjct: 863 TIVKTNVDAIKEIVRQIRLRDLGGIIVIDFIDMDERKNRQKVMAALEEALKSDRAPSKVL 922 Query: 378 HISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQ 437 + FGL+ ++R+R+ SL + C C TG V+ ++ I + + A + + Sbjct: 923 QFNDFGLVAITRKRVKQSLERTLGTPCSYCEATGFVKSVPTMCSEIYTEVRKLAKHLDGK 982 Query: 438 EVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHV 486 +V V +A + V E G ++ + M H+ + Sbjct: 983 DVTIRVNPEVAKAIKENNGKLVQEFEE-LTGKTVIVKSDPAMHQEHFDI 1030 Score = 94.1 bits (232), Expect = 3e-17, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + L ++ E RVALV+ +L ++ E +IYKG++TR+ P +++AFVD Sbjct: 1 MNKELYVSSNPHETRVALVEDDQLAEIFYERENEYTLAGSIYKGRVTRVLPGMQSAFVDV 60 Query: 61 GAERHGFLPLKE 72 G ER FL + + Sbjct: 61 GLERDAFLYVSD 72 >UniRef50_A9BIJ0 RNA binding S1 domain protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIJ0_PETMO Length = 471 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 131/427 (30%), Positives = 237/427 (55%), Gaps = 22/427 (5%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K ML+ + EE+R+A+++ +L ++ E ++ I+ G I PSLEA FV+ G Sbjct: 5 KTMLV-SKALEEIRIAILEEDKLSEIFFEDFETDRNIGKIFLGIIENRVPSLEAFFVNIG 63 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFIS 121 ++GFL +++ + + + G +++VQ+ K+ KG L+ IS Sbjct: 64 LGKNGFLRYRDVLDDP--------------NQYKVGDKILVQVRKDGGTRKGPQLSMQIS 109 Query: 122 LAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 L G YLV +PN+ + GISR+I + +R L++ + + + +I RT G + + Sbjct: 110 LPGKYLVYIPNSNESIGISRKILQEKERIRLRQVAKKILI-DNESIIFRTNSEGIDEKEV 168 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 + +LS K + +I + S+ P ++++ES+ + R+ L +I+ D+ ++ Sbjct: 169 EVELSEMRKMYNSILQRFHSQKNPGVLYEESDFLEYILRERLDSKTKKIITDDRQIFRKL 228 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++ + + K++ G +F + I Q+E F +++ L GG+I +D TEALT Sbjct: 229 KKSLKGF---ELKPKVEFVRG--DVFQIHNIYHQMEEIFTKKIELSGGGTITVDRTEALT 283 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AID++SA G +IEET+F TN+EAA EIARQL+LR++GG+IV+DFIDM H++ + Sbjct: 284 AIDVDSAGNLEGKNIEETSFITNMEAAKEIARQLKLRNIGGMIVVDFIDMKDSSHKKTII 343 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N L+E ++D++++ I + GLLE+ R+R + L + + CP C GTG + + Sbjct: 344 NILKEESKKDKSKVTILGFTNMGLLEIIRKRTTQPLDTNVYSQCPLCHGTGKIIAPSLVH 403 Query: 421 LSILRLI 427 +++ + Sbjct: 404 GRLIKEL 410 >UniRef50_C9XNN6 Ribonuclease g n=8 Tax=Clostridium RepID=C9XNN6_CLODC Length = 473 Score = 441 bits (1133), Expect = e-122, Method: Composition-based stats. Identities = 139/484 (28%), Positives = 260/484 (53%), Gaps = 31/484 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK+++I + + + A+++ +RL +L +E +++ +NIY+G + ++ P +EA FVD Sbjct: 1 MKKIVIESLIGSQ-KTAVLEDERLTELFVEDNLNKKTVSNIYRGIVKKVIPGIEACFVDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++ +L LK+ ++ GQ+++VQI+KEE G KGA L T I Sbjct: 60 GFKKLAYLQLKK------------------GSTIKSGQDILVQINKEEIGTKGAKLNTEI 101 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 S++G Y+V +P+N R IS +I + +R LK+ ++ E +GLI+RT G + + Sbjct: 102 SISGRYIVYIPSNDRTT-ISNKITDEKERFRLKKITKAVNK-ENLGLIIRTEAQGCTHDE 159 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 ++ D+ +E I K + P L+++ + + +D + DI I+ ++ Sbjct: 160 IKKDIEELKLKYENILKEYKLGIGPKLLYKSLDFATKYVKDNVNDDIESIITNSYDKYSE 219 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + + + + + K+ L +F Y+IES+IE ++V L SGG ++I+ TEAL Sbjct: 220 LKSILRGIDKT-YVDKLCL-EENRDVFDLYRIESKIEKLLNKKVWLKSGGYLIIEKTEAL 277 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+N+ + G ++ET + TNLEAA EI RQL +RD+ G+I+IDFIDM +HQ+ + Sbjct: 278 TVIDVNTGKFIGTGKLDETVYKTNLEAAKEIVRQLIIRDIAGIIIIDFIDMHKKKHQKEI 337 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 + L E +D+ + ++ +++ GL+E++R+R S+ + CP C G T++ Sbjct: 338 LHILEEEFNKDKRKAEVLGMTKLGLVEVARRREKESIDKYYLMSCPCCDGEQTIKSV--- 394 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQ---DGVRCVIVPN 476 IL IE+E ++ + V+ + V ++ + + I + ++ + N Sbjct: 395 -HYILDSIEKEIMRISEHTVYKNIMVEFNDFIFEQIKEYYMDIIDKIGEKYNIKISLNAN 453 Query: 477 DQME 480 ++ Sbjct: 454 STLK 457 >UniRef50_A2BYM7 S1 RNA binding domain:Ribonuclease E and G n=8 Tax=Prochlorococcus marinus RepID=A2BYM7_PROM5 Length = 608 Score = 439 bits (1130), Expect = e-121, Method: Composition-based stats. Identities = 140/420 (33%), Positives = 229/420 (54%), Gaps = 20/420 (4%) Query: 1 MKRMLINATQQEELRVA-LVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 M + +I A E+ R+A L+ R+ +L + + + +I+ G + + P ++AAF+ Sbjct: 1 MSQQIIIA---EQARIAALLTDDRVDELIVAQG--QYQIGDIFLGTVENVLPGIDAAFIH 55 Query: 60 YG-AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 G +E++GF+ + ++ G I ++L Q+V+VQ+ KE GNKG LT Sbjct: 56 IGESEKNGFIHVSDLGPLRL-----KKGVVGITELLEPKQKVLVQVMKEPTGNKGPRLTG 110 Query: 119 FISLAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSA 177 ISL G YL+L P ISR+I +R+ L+ AL L P GL+ RT Sbjct: 111 NISLPGKYLILQPFGQGVN-ISRKINTDTERSRLR-ALGVLIKPPSTGLLFRTEAEKIKE 168 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 E L DL ++ W+ + K +E+ P LI+++ + ++ RD ++ +++IDN L Sbjct: 169 ELLIEDLENLIQQWDQVLKISETCQPPNLINRDEDFSLKILRDCIKASTSKVVIDNKVAL 228 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIP--LFSHYQIESQIESAFQREVRLPSGGSIVIDS 295 E A+ + D + + L+ +I + YQI I+ A + V LPSGG I+I+ Sbjct: 229 EKAKDFL---INNDSNVDLVLHNNDINEHILEKYQINKTIQKALEPRVDLPSGGYIIIEP 285 Query: 296 TEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRH 355 TEALT ID+NS TR + +T TN EAA EI+RQ++LR++GG++VIDFIDM R Sbjct: 286 TEALTVIDVNSGSFTRSANSRQTVLWTNCEAAVEISRQMKLRNIGGVLVIDFIDMESRRD 345 Query: 356 QRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRD 415 Q + + A++ D AR QI+ ++ GL+E++R+R ++ E C C+G G ++ Sbjct: 346 QFQLLEQFTLAIKDDSARPQIAELTELGLVELTRKRQGQNIYELFGKKCNACNGLGHIKS 405 >UniRef50_B1LBB5 Ribonuclease, Rne/Rng family n=6 Tax=Thermotogaceae RepID=B1LBB5_THESQ Length = 459 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 141/477 (29%), Positives = 238/477 (49%), Gaps = 27/477 (5%) Query: 17 ALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIARE 76 A++D L ++ + E IY G+I +I P LEAAFV G R+ FL L EI Sbjct: 4 AVMDDGELEEVFFDEI--ETIAGKIYLGRIEKIVPGLEAAFVKIGKGRNAFLKLSEINEA 61 Query: 77 YFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRA 136 Y ++EGQ+++VQ+ K+ G KG +T I +A ++V+ P + Sbjct: 62 YRKTVLKG-------QEVKEGQKILVQVKKDASGKKGPQVTPQIGIADRFVVIFPF-KKV 113 Query: 137 GGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIK 195 G+SR+IE +R L+ SL G+G+I+RTA G E + + L+ W + Sbjct: 114 IGVSRKIEDASERRRLRTIAFSLRKKYGVGVIMRTAAEGVDEEEIIKNFERALEKWNQVL 173 Query: 196 KAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSK 255 + P L+++E + + + ++ + I +++ ++ +LE ++++ L + Sbjct: 174 QKFRRSRKPKLLYEE-DPVEQIIKEKVNSKIDKLIYNDRSLLETLQKYLQNLPKKPEIEY 232 Query: 256 IKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDI 315 + E LF + + +++ R V L SGG+IVID TEALT ID+NS T + Sbjct: 233 V-----EGDLFEKFSVYERLKKLLSRTVPLKSGGNIVIDRTEALTVIDVNSESYTDAENQ 287 Query: 316 EETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQ 375 EE A TN+EA +EI RQL LR++GG++VIDFI + + +R +E ++D RI+ Sbjct: 288 EELALKTNMEAIEEIVRQLILRNIGGIVVIDFIKQKDPKSYEKLLSRFKEVAKRDGTRIE 347 Query: 376 ISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKEN 435 I + GLLE++R+R + L CP CSGTG V + L + R+ E+ ++ Sbjct: 348 IFGFTNLGLLEITRKRTTRPLDTLLFTRCPVCSGTGKVLSQKIL---LKRIREDLKKLKD 404 Query: 436 TQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPH-YHVLRVRK 491 +EV V ++ Y KR + ++ + + + P+ Y + K Sbjct: 405 FEEVTLKVHPNMSGYF---KREDIKKLQKEF---KVKLNLDYGWHDPNSYEIKAKTK 455 >UniRef50_A5ZQK1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5ZQK1_9FIRM Length = 396 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 126/402 (31%), Positives = 206/402 (51%), Gaps = 13/402 (3%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 ML+N A+V Q++ +L +E G + NIY G++ I +++AAFV Sbjct: 1 MLLNEVPCTVC--AIVQDQKVIELRLEPSGKKNTLNNIYVGQVENIAANIQAAFVRLSDS 58 Query: 64 RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLA 123 +G+LPL + + LR G +++VQI++E K ALT ++ + Sbjct: 59 VNGYLPLNQCTNAIYTDGRKTD------QPLRPGDQLLVQINREAMKGKLPALTANLNFS 112 Query: 124 GSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLE-LPE-GMGLIVRTAGVGKSAEALQ 181 G YLVL N + G S ++ ++ + L + L LPE G+I RT S E Sbjct: 113 GKYLVLTTGNRKI-GFSNKLSKEESSLLNKWLEEERSLPEREYGIIARTNAAEASKEEFF 171 Query: 182 WDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELAR 241 +L K +E + +R L+++ + A RD +D+ EI+ D P++ E Sbjct: 172 HELEMLKKQYEKVAVHGRNRTCYSLLYEAEPFYLAAVRDVYTRDLDEIVTDIPEIHEKIF 231 Query: 242 QHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 +++ +PD +KLY ++ PL+ Y +E I+ ++ L SGG +VI TEA Sbjct: 232 AYLSEF-QPDKLEILKLYQDKLLPLYKLYSLEGAIDEVCHEKIWLKSGGFLVIQQTEAFV 290 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +ID+NS + T EET NLEAA EIARQ+RLR+L G+I++DFI+M HQ + Sbjct: 291 SIDVNSGKYTGKKKAEETYRKINLEAAAEIARQIRLRNLSGIILVDFINMENPDHQDELF 350 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHH 402 + L++ +R+D + + I+ +LEM+RQ++ L E Sbjct: 351 HVLQKYLRKDPVKCKAIDITPLHILEMTRQKVRRPLIEDLRE 392 >UniRef50_Q97JL8 Ribonucleases G/E family protein n=1 Tax=Clostridium acetobutylicum RepID=Q97JL8_CLOAB Length = 481 Score = 438 bits (1125), Expect = e-121, Method: Composition-based stats. Identities = 122/436 (27%), Positives = 222/436 (50%), Gaps = 29/436 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK++ I + L+VA++D + IE E IYKG + I P+++ AFVD Sbjct: 1 MKKIFIERC-TDFLKVAVLDNGEFKECFIEDEKEEIYSGAIYKGVVKNIVPAIKCAFVDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++G+L + S NI ++G E++V+I KE G+KG ++ I Sbjct: 60 GNGKNGYLYMD-----------SKFNNVNI----KKGDEMLVEIVKESIGSKGPKVSNAI 104 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 ++ G Y V++ N IS++I +K +++ PE +G+++RT S E + Sbjct: 105 TIPGRYSVIITLNTDIN-ISKKISDS--KYIKMLKENVKKPEDVGVMIRTNAQNVSLEDI 161 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIG--EILIDNPKVLE 238 ++ + + I+K A+ +++ I R RD +D+ +++++ K + Sbjct: 162 NNEIENLYETYVGIRKKAKYSNKVGIVYNAGGTIERIMRD--NEDVADLTVVVNDKKDFD 219 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 + +I L + D +KL+ I L +Y E +I R+V L GG ++ID+TEA Sbjct: 220 NIQNYI--LTKKDMKCNLKLHDSNISLMEYYGFEREIVKLIDRKVMLKCGGYLIIDNTEA 277 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 + ID+NS + + ++ TAF TN+EAA E ARQ+ LR+L G+IVIDFID+T + Sbjct: 278 MHVIDVNSGKNIKNSNLARTAFLTNMEAAKEAARQIILRNLSGIIVIDFIDITDEEAKSK 337 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 + N L++ +D+ + + + +++++R+R S+ + C C G+G + E Sbjct: 338 IVNVLKQGFLKDKNKTIVYPFTELNIVQIARRRRGKSIYDYLEEKCDSCIGSGRKLNFEY 397 Query: 419 LS----LSILRLIEEE 430 + ++R +EE Sbjct: 398 MKNLMRNKVIRFLEEH 413 >UniRef50_Q01YX3 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01YX3_SOLUE Length = 913 Score = 436 bits (1121), Expect = e-120, Method: Composition-based stats. Identities = 147/410 (35%), Positives = 227/410 (55%), Gaps = 6/410 (1%) Query: 79 PANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGG 138 A P+I D+L+EGQE+IVQI KE G KGA +T+ I+L G +LV MP G Sbjct: 507 DARSDRPPLPSISDLLKEGQEIIVQIAKEPLGQKGARITSHIALPGRFLVYMPTVDHI-G 565 Query: 139 ISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKA 197 +SR+I D+R LK L + G IVRTAG G++ E L+ D+ F W +++ Sbjct: 566 VSRKIPSDDERLRLKRILQTNRTGIPGGYIVRTAGDGRTEEELRADMMFLYNLWLDMRQK 625 Query: 198 AESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIK 257 AE R AP LIH + NV+ R RD L + +DN +V E + + +P +++K Sbjct: 626 AERRAAPLLIHHDLNVVERILRDQLTSSYKSVWVDNEEVYESVLRFVQRF-QPALVNRVK 684 Query: 258 LYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGD-IE 316 +YT P+F + I +++E A + +V L SGG IVI+ TEAL AIDIN+ + + +E Sbjct: 685 MYTRSTPIFDEFGITAELEKALRPKVWLKSGGYIVINQTEALVAIDINTGKYVGKSNRLE 744 Query: 317 ETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQI 376 +T TN +A EI RQ+RLRDLGG+IV+DFIDM ++++ V L EA+R DRA +I Sbjct: 745 DTIVKTNTDAIKEIVRQIRLRDLGGIIVVDFIDMDERKNRQKVMQALEEAMRADRAPYKI 804 Query: 377 SHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENT 436 + FGL+ ++R+R+ SL + CP C G G V+ +++ IL+ + A + Sbjct: 805 LQFNDFGLVAITRKRVKQSLERTLCTPCPYCEGAGYVKSPQTVVGEILQEAHKIARAVD- 863 Query: 437 QEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHV 486 V V +A L + + + + +E G ++ + + + + Sbjct: 864 GNVMLRVAPEVAKLLKSNQNTFLQEVEE-ILGRPVIVKSDPLLHQEKFDL 912 Score = 89.0 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 43/76 (56%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + LI + + E RVA+++ ++ ++ + +I+KG++TR+ P +++AFVD Sbjct: 1 MSKELIISATRHETRVAVIEEDQVVEIYHQRENEYSLAGSIHKGRVTRVLPGMQSAFVDI 60 Query: 61 GAERHGFLPLKEIARE 76 G R FL + + + Sbjct: 61 GLGRDAFLYVSDFFED 76 >UniRef50_Q3AF57 Ribonuclease, Rne/Rng family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AF57_CARHZ Length = 392 Score = 435 bits (1119), Expect = e-120, Method: Composition-based stats. Identities = 130/413 (31%), Positives = 214/413 (51%), Gaps = 29/413 (7%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + L+ Q E A++ + L + + + +IY GK+ ++ P L+AAFV+ Sbjct: 1 MTKTLVFHRQPEYDLAAVMVDGSPFSLFAKRRDEQTQINDIYLGKVEKVVPGLQAAFVNL 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++G+LPL EI ++ G V+V++ K KGA L+T I Sbjct: 61 GLAKNGYLPLDEIN-------------------VKPGDVVLVRVVKNPTAQKGAKLSTVI 101 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G LV P GISR++ D R L +L LP G IVRT E L Sbjct: 102 SLPGRNLVYFPQKEMK-GISRKLTEDKREYYHRVLENLNLP--GGFIVRTLAGE--EEDL 156 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 + + W+ I + +++ AP L+++E ++ R+ L +D + +D+ ++LE+ Sbjct: 157 LQEAKRLYEEWQGILERSKTAQAPALLYKEDDLFTWCLRELLDKDFTALYVDDFELLEIG 216 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++ R F + + + + +E + V L +GG +VI+ TEALT Sbjct: 217 QKF-----RERFRVLLPPIYKSFNVMEEFNLIRTMEKLTRERVWLKNGGILVIEKTEALT 271 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AID+NS + T D++ETAF NLEAA EIA+Q+RLR++GG+IV+DFI + + Sbjct: 272 AIDVNSGKFTGKKDLKETAFKINLEAAREIAKQIRLRNIGGIIVVDFISLLEEERWEEIL 331 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 + E +D+A+++I+ + GL+E++RQ++ S+GE H C C GTG + Sbjct: 332 RVMEEEFLRDKAKVKITGKTPSGLVEIARQKIGLSIGELFTHECSVCQGTGRI 384 >UniRef50_Q2B6H0 Cytosolic axial filament protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B6H0_9BACI Length = 492 Score = 434 bits (1117), Expect = e-120, Method: Composition-based stats. Identities = 139/498 (27%), Positives = 237/498 (47%), Gaps = 12/498 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK+++IN +E+ L + + L I+ P + +IY G + ++ P + AAFV+ Sbjct: 1 MKKLVINYATREKRYAVLNESGKPEKLIIDQPKNLSAVGSIYLGTVAKVLPGMNAAFVEI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRP-NIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G E+ GFL +A A +I +REG++++VQ++K+ G KG LT Sbjct: 61 GEEKSGFLHRDRLASYVRSAEDKEKKDKKSISSFVREGEKLLVQVEKDAAGTKGPRLTNV 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 I G L+ MP R +SR+IE D E L E GLI RT+ G S E Sbjct: 121 IEFQGEKLIYMPFG-RYVAVSRKIEKDSAREELRTLGMKLKEEEEGLIFRTSAAGASEED 179 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 Q +L + K A S P + ++ + A + R GE+++D+ V + Sbjct: 180 FQKELEELRAEHRELAKKAASVKKPAKLAEKETFLEEAAAEMARLGAGEVVVDDLAVKQK 239 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + A S ++ Y + +FS Y ++ +I+ A ++ V L +G ++ D EAL Sbjct: 240 LEKAAAE-------SVVRYYNNKESIFSAYNLDQEIDRALKKIVWLDNGAYLIFDEAEAL 292 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+N+ + + ++ +T TN AA E ARQ+RLRD+GG+I+IDFIDM R ++ + Sbjct: 293 TVIDVNTGKYSGRENLRDTVLRTNEWAAAEAARQIRLRDIGGMILIDFIDMKEERDRQHI 352 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 + + +R+D R +I + G+L+++R++ +L ES C C GTG + E+ Sbjct: 353 SRVMEKELRKDERRTRIVGFTPLGILQITRKKTRAALSESLTVKCTACEGTGRMVSAETA 412 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 + + R I E + + + + E+ +E G+R D Sbjct: 413 AFRLEREIWEMRGSDYEAAL-IRLSADVLDVFSGEQGIHRKRLEA-TCGLRLFFAAEDS- 469 Query: 480 ETPHYHVLRVRKGEETPT 497 P Y + ++ +E Sbjct: 470 RIPFYEIRQLGSLKEIEA 487 >UniRef50_A9KMH0 Ribonuclease, Rne/Rng family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KMH0_CLOPH Length = 404 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 115/405 (28%), Positives = 205/405 (50%), Gaps = 11/405 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M LI + + AL +G ++ ++++ NIY GK+ I ++ AAFV+ Sbjct: 1 MSGKLIVTKMDDNIVTALYEGNQMIQVNVDREEEVSSLGNIYIGKVKNIVKNINAAFVEI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 + +LPL ++ F S+ D + G E++VQ+ KE+ K +TT I Sbjct: 61 SDRKMCYLPLADVVNPIFTHAKSS-------DKVNIGDELVVQVIKEDIKTKAPVVTTSI 113 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 + G Y+VLM + + GIS +I + + + +L S L E G ++RT V + Sbjct: 114 AFTGKYVVLM-HGTKTIGISSKIGSEQKRKRLRSLVSPFLGEQYGFVLRTNAVEAEDNLI 172 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 ++ K ++ I R L+++ + A RD +D+ I+ D+ + + Sbjct: 173 VEEIEQLKKQYDRILTYGIYRNRFSLLYKTLQPFLCAIRDGFAKDLEAIITDDLSLYDEI 232 Query: 241 RQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 ++++ R D K+ Y ++ L Y IE+++ A + +V LP GGS+VI TEAL Sbjct: 233 KEYLTEHQREDI-GKLTFYQDKLLALSKLYSIETKLSRALREKVWLPCGGSLVIQPTEAL 291 Query: 300 TAIDINSARAT-RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 T ID+N+ +A + +++ET NLEAA+EIA Q+ LR+L G+I++DFIDM + Sbjct: 292 TVIDVNTGKAVSKKKNVQETFLKVNLEAAEEIAAQICLRNLSGIIIVDFIDMISEDAKTQ 351 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHV 403 + E +R+D + + ++ L+E++R+++ L E H Sbjct: 352 LLRVFDEYLRKDPIKTTLVDMTALNLVEITRKKVRKPLHEQMKHT 396 >UniRef50_A7H8A5 Ribonuclease, Rne/Rng family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7H8A5_ANADF Length = 740 Score = 431 bits (1109), Expect = e-119, Method: Composition-based stats. Identities = 149/455 (32%), Positives = 234/455 (51%), Gaps = 5/455 (1%) Query: 75 REYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNP 134 R + NI+D+L+EGQEVIVQ+ K+ G KGA +T+ ISL G +LV MP Sbjct: 285 RNGHEREKRSKEPKNIQDLLKEGQEVIVQVAKDPIGTKGARITSHISLPGRHLVFMPTVD 344 Query: 135 RAGGISRRIE-GDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEA 193 GISRRIE +R L+E + + P+G G IVRT A L+ D+ F ++ W Sbjct: 345 HI-GISRRIEKDSERRRLREIVDRMR-PDGTGFIVRTVAENVEAGKLEADIRFLIQVWNE 402 Query: 194 IKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFS 253 I + + AP L+H + ++I+RA RD D+G+++ID+ E + + P Sbjct: 403 IIRTKDKVSAPALLHGDLDLILRATRDLFTADVGKLVIDDRDEYERILRFVHE-QAPHLE 461 Query: 254 SKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGG 313 S+I+ Y GE P+F Y IE +++ A QR+V L SGG I++D EALTAID+NS R Sbjct: 462 SQIEYYRGEEPIFDAYGIEQELKRASQRKVWLKSGGYIIMDQAEALTAIDVNSGRYVGKK 521 Query: 314 DIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRAR 373 ++EET N+EAA EI QLRLR++GG+I+IDFIDM +++ V L++A+ +D+A+ Sbjct: 522 NLEETITKINVEAAKEIVYQLRLRNIGGIIIIDFIDMDKPQNRDKVFKALQDALGRDKAK 581 Query: 374 IQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALK 433 + IS GL+EM+R+R+ S+ + C C G G ++ +++ I R I EA+ Sbjct: 582 TNVLKISELGLVEMTRKRVRESVTRVMNEPCSYCEGKGHLKSKITITYEIFREIRREAVH 641 Query: 434 ENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGE 493 + +A L +R + + R + + P + + ++ Sbjct: 642 FPEPVLVVNCHPEVARILQGSEREELRYLMDRFNK-TIQVKPQSGYHQEQFDIYGRQERI 700 Query: 494 ETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPA 528 + P + + P A Sbjct: 701 DQPRDRERERGRGRDRDRGGRGKSEEPATPPADAA 735 Score = 95.6 bits (236), Expect = 1e-17, Method: Composition-based stats. Identities = 23/72 (31%), Positives = 41/72 (56%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +L+ E RVALV+ +++ +E + NIYKG++ R+ P ++AAFVD G Sbjct: 4 NSILVINAAGAETRVALVENNTIHEYYLERKREKGIVGNIYKGRVVRVLPGMQAAFVDIG 63 Query: 62 AERHGFLPLKEI 73 ++ FL + ++ Sbjct: 64 LDKAAFLYVGDV 75 >UniRef50_P51211 Ribonuclease E homolog n=2 Tax=Porphyra RepID=RNE_PORPU Length = 511 Score = 430 bits (1105), Expect = e-118, Method: Composition-based stats. Identities = 131/489 (26%), Positives = 226/489 (46%), Gaps = 36/489 (7%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M ++ + A++ ++ L + + ++IY G + +I + AAFVD Sbjct: 1 MTNTIVISCLHNI--AAILYCGQIQKLVV--ANAHYQVSDIYLGTVDKIFSGINAAFVDL 56 Query: 61 GAER-HGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G GF+ + + + NI ++L Q+++VQI KE NKG LT Sbjct: 57 GKNEYSGFIHISDTGPLKKKYYIN-----NITNILTIRQKILVQIIKEPTLNKGPRLTAN 111 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 I+L+G Y+VLMP + +A ISR+I +D +ALA L P MGL+ R + +G E Sbjct: 112 ITLSGRYIVLMPFS-QAICISRKIYDEDERHYLKALAILIKPPTMGLLFRPSAIGIDEEI 170 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + +L+ + W I+K+A + AP L++++ +++ + RD+ + I+ID+ L+ Sbjct: 171 ILSELTNLKEQWYFIQKSAINNCAPVLLYKDEDIVKKVIRDFYDNNTKNIVIDSNLGLKQ 230 Query: 240 ARQHIAAL--GRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 +I ++LY+ + ++I I A +V L GG + I++ E Sbjct: 231 LNYYINTWQCNFSSTIPSLQLYSSNKCILDTFRINQAISRALIPKVDLILGGYMFIETLE 290 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 A T ID+NS ET TN AA EIA QL++R++ G+I+IDFIDM R Q Sbjct: 291 AFTIIDVNSGSFNNSTSARETVLKTNCSAATEIAYQLKIRNIAGVIIIDFIDMESQRDQL 350 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 + + + D A+ QI +S GL+E++R+R SL E N+ Sbjct: 351 QLLEHFDKELSLDDAKPQIVQLSELGLVELTRRRKGKSLYELV--------------SND 396 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNE---------KRSAVNAIETRQDG 468 S +E+ + + + + S+L +E K+S + + Sbjct: 397 SNYFHFFIQLEQLDSIKPSSYKSKRLSSSVKSWLFSEIDMINRVFFKKSNLYRLSNFYYA 456 Query: 469 VRCVIVPND 477 I+ +D Sbjct: 457 RNLYIIYSD 465 >UniRef50_C5RGP2 Ribonuclease, Rne/Rng family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RGP2_CLOCL Length = 475 Score = 429 bits (1104), Expect = e-118, Method: Composition-based stats. Identities = 135/499 (27%), Positives = 233/499 (46%), Gaps = 31/499 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + I + LR+A+ D ++L IE E IY G + I P+++ AF+D Sbjct: 1 MNEIFIEKDKPY-LRIAIKDHEKLLACYIEEETEEAVPGQIYLGIVKNIVPAIKGAFIDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G + F+ L L++G +V++ +E K A +T+ I Sbjct: 60 GKAKDAFMHLDNNRD------------------LKKGDYFLVEVLREATELKSANVTSLI 101 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDR-TELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ++ G+Y+V+ P +A ISR+I E+KE L + G+ VR++ Sbjct: 102 TIPGTYVVVNPM-EKALKISRKISNSKFINEVKEQLKDVST---YGITVRSSAENVDINI 157 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 ++ ++ + I + P LI+ + + R RDY+ I++D+ K +L Sbjct: 158 IREEVQALNIVVDKIIAKGKYSLKPQLIYDDGGALGRILRDYINDGTKRIIVDDIKNYDL 217 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 +++I L S+++ ++ +F Y IE +I + ++V L SGG I+I+ TEAL Sbjct: 218 VKENIEKL---HSSAELIMHEESRGIFDCYSIEKEILALRHKKVVLKSGGYIIIEKTEAL 274 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +ID+NS ++T I +TAF TNLEAA+EIARQ+ LR+L G+IVIDFI+M + + V Sbjct: 275 YSIDVNSGKSTGEVAISKTAFKTNLEAAEEIARQIILRNLSGIIVIDFINMKDKKEKTEV 334 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 L A ++D + I + L++++R++ +G C C G G + L Sbjct: 335 IKILEAAFKKDNNKTTIYPFTDVNLVQITRKKRGKDIGSFLEESCKHCGGEGARLKWDYL 394 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 L LI+ + +K Q + + I S +E + + T +G C++ Sbjct: 395 KL----LIKNQLIKLKGQHITKEFVITIDSKYKSEVQKKLTEFITFIEGHDCLLYLLYLD 450 Query: 480 ETPHYHVLRVRKGEETPTL 498 Y V V + L Sbjct: 451 NFNSYKVEPVIFDSQRKNL 469 >UniRef50_C0D9K4 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0D9K4_9CLOT Length = 400 Score = 425 bits (1092), Expect = e-117, Method: Composition-based stats. Identities = 116/404 (28%), Positives = 198/404 (49%), Gaps = 14/404 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M +++I ++++ A+ G++ L +E NIY GK+ ++ ++ AAFV+ Sbjct: 1 MDKLVI-TRWRDKVLTAVFSGRKPLALTLEPEQGGSLLNNIYIGKVQKVVKNISAAFVEI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R G+LPL+ RP K+ L G E+I+Q++K+ K +T + Sbjct: 60 GGGRVGYLPLEGTCPRVL-------NRPGAKN-LAPGDELIIQVEKDAVKTKAPVVTCRL 111 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASL---ELPEGMGLIVRTAGVGKSA 177 S AG Y VL P SR + + ++ L E GLIVRT Sbjct: 112 SFAGRYCVLTAGKPGVNFSSRLTDQSFKRRVRPVLEEAVRARGHEACGLIVRTNAGEAGE 171 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 E L +L+ +E+++ R +++ + + RD L + +L D V Sbjct: 172 EQLLAELAVLFDQYESVQNQGNHRVCYSCLYRSLPGYMASVRDSLGGSLEAVLTDQADVY 231 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDST 296 E + ++A + D K+ Y + L + Y ++ +E A + V L SGG +VI+ T Sbjct: 232 EELKHYLALNQQKDL-EKLSFYDDPLLSLGALYSLDKVMEEALGKRVWLKSGGYLVIEPT 290 Query: 297 EALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 EA+ ID+N+ + + ++ET NLEAA EIA Q+RLR+L G+I++DFIDM P ++ Sbjct: 291 EAMVVIDVNTGKYSGKKTLQETILKINLEAAVEIAHQIRLRNLSGIILVDFIDMEPGENR 350 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESS 400 + L EAV D + + +++ L+EM+R+++ L E Sbjct: 351 EILLKALSEAVSADPVKTAVVDMTKLNLVEMTRKKVRRPLHEQV 394 >UniRef50_C6J9J6 Putative uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J9J6_9FIRM Length = 398 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 112/389 (28%), Positives = 197/389 (50%), Gaps = 11/389 (2%) Query: 17 ALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIARE 76 A + ++ +L E G + NIY G+I I ++ AAFV A +L L + Sbjct: 17 AYEEDGKVMELRFEPVGEKSSLGNIYVGQIENIAANIGAAFVQISAGEKCYLQLSDAPNA 76 Query: 77 YFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRA 136 + + L+ G E++VQI +E K A+TT ++ G YLVL + + Sbjct: 77 IYASVKKGDRP------LKAGDEILVQISREAMKGKLPAVTTNLNFTGKYLVLTTGDKK- 129 Query: 137 GGISRRIEGDDRTELKEALASL--ELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAI 194 G+S ++ DDR+ + + + + + G+IVRT S E + +L + + Sbjct: 130 FGLSSKLSNDDRSRISKWMEAEVNRPDKEFGIIVRTNAADASKEEILKELEYLKGLYHKA 189 Query: 195 KKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSS 254 SR +++ + A RD +++ EI+ D P++ ++ + P+ Sbjct: 190 AVDGRSRTCFSCVYRTEPFYISAVRDANSRNLEEIITDIPEISRQISDYLNS-NSPEEKE 248 Query: 255 KIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGG 313 K++ Y ++ PL+ Y++E+ +E +V L SGG +VI TEA +ID+NS + T Sbjct: 249 KLRFYDDKLLPLYKLYRLETVLEEIQHEKVWLNSGGFLVIQQTEAFVSIDVNSGKFTGKK 308 Query: 314 DIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRAR 373 ++ET NLEAA EIARQLRLR+L G+I+IDFI+M HQ + + L++ +R+D + Sbjct: 309 KMQETYRKINLEAAKEIARQLRLRNLSGIILIDFINMENQDHQDELFHVLQKYLRKDPVK 368 Query: 374 IQISHISRFGLLEMSRQRLSPSLGESSHH 402 + I+ +LE++R+++ + E Sbjct: 369 AKAVDITPLHILELTRKKVRKPVIEEIRE 397 >UniRef50_Q0SR50 Ribonuclease, Rne/Rng family n=8 Tax=Clostridium perfringens RepID=Q0SR50_CLOPS Length = 480 Score = 423 bits (1086), Expect = e-116, Method: Composition-based stats. Identities = 144/508 (28%), Positives = 243/508 (47%), Gaps = 29/508 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M+ + + + LRVA+ + L + IE E + IYKG + R+ P +++AF+D Sbjct: 1 MRDIYVERRENL-LRVAIKENNLLSECYIEEESLEPVQGEIYKGIVKRVVPGIKSAFIDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G + ++ L E ++ L++G +IV++ KE+ G+KGA +T+ I Sbjct: 60 GYSKQAYMILGEDEKD-----------------LKQGDGIIVEVLKEQFGSKGAKVTSKI 102 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG Y VL + ISR+IE + KE SL P +G+ VRT S + Sbjct: 103 SLAGRYCVLETSRNDI-SISRKIENLEFK--KELENSLIKPSELGVTVRTKAQSASIFEI 159 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q ++ K+++ + + + P I + ++I + RD + I++D+ + E Sbjct: 160 QEEIEELYKNYKEVIREGKFSLNPKKIMGKGDLINKIIRDDIDAYTSSIIVDSIEDYERI 219 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + I+ K+ LY LF +Y IE +I S V L GG IVI+ TEA+ Sbjct: 220 KDSISN----SEYLKVTLYDDARSLFDYYGIEKEILSLRNNRVNLNCGGDIVIEKTEAMY 275 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ID+NS + T + E+TA+ TN AA EIARQ+++R+LGG+I++DFIDM +++ + Sbjct: 276 VIDVNSGKNTNHKNKEKTAYETNKNAAIEIARQIKIRNLGGIILVDFIDMYSQENKKKIL 335 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 L++ + D R +I + GL++++R R S+ E C C+G G ++ Sbjct: 336 KILKDEFKSDSQRAKIFPFTELGLVQITRYRKGKSIYEYIEENCLACNGHGKRLKLSYIN 395 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 L L+ E LK+N + + I S + R + + I N Q Sbjct: 396 L----LLRNEILKKNGEGKIKDFHIEINSIYEKDIRGNIFEFLKEIGALDLNIYLNFQES 451 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEE 508 Y V + + ++ L K E+ Sbjct: 452 KDFYKVEPLIFKNQIESVKEYLVKNIEK 479 >UniRef50_A6LQR5 Ribonuclease, Rne/Rng family n=8 Tax=Clostridium RepID=A6LQR5_CLOB8 Length = 482 Score = 420 bits (1080), Expect = e-115, Method: Composition-based stats. Identities = 130/487 (26%), Positives = 227/487 (46%), Gaps = 27/487 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK + + ++ LRVA+ L + +E +E IYKGKI I P++ + FVD Sbjct: 1 MKEIFVERRER-ILRVAIKSNNELIESIVEESKNEPIIGEIYKGKIKNIIPAINSVFVDL 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++ G+L + + +++G +++V++ KE +KGA LT + Sbjct: 60 GLDKEGYLYYSDELKA---------------KGIKKGDDILVEVLKEPLNDKGAKLTAKV 104 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 S+ G Y+VL + S+RIE ++ E L+++E + + + VRT G L Sbjct: 105 SIPGKYIVLNCY-EQGIEFSKRIEDKEKK--IELLSNIEPLKDVCITVRTEGANVDINIL 161 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 + ++S ++ I K + I+ E + + ++ ++I +I +DN + Sbjct: 162 KNEISKLYDEFQNIDKKMKHSLGVRKIYGEDLTLTKLLMNFSGEEIIKIYVDNSIDFDKI 221 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + + KI+ Y G LF Y IE ++ +V L GG IVID TEA+ Sbjct: 222 SSF----AKGQENLKIEKYEGYRKLFDFYGIEKELLRLRHNKVNLQCGGYIVIDRTEAMY 277 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ID+NS + + +T TNLEAA EI +Q+RLR+L G+IVIDFIDM + V Sbjct: 278 VIDVNSGKNIKEKSFNKTILETNLEAAREIGKQIRLRNLSGIIVIDFIDMRDKSQRDIVM 337 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 + L+E++R D+ ++I ++ L++++R+R S+ E C C G G + Sbjct: 338 DALKESLRLDKGNVKIFPFTQLDLVQIARKRQGKSIYEYMEEECSLCKGRGIILKLSY-- 395 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 I LI+ + ++ + + + S + R + DG+ I N Sbjct: 396 --IEGLIKNDIVRMQEESSINCFHIQMDSVYKDRIRENIFEFMKEIDGLDKEIYLNYVDN 453 Query: 481 TPHYHVL 487 Y + Sbjct: 454 IEGYKIE 460 >UniRef50_C3WHH5 Ribonuclease G n=4 Tax=Fusobacterium RepID=C3WHH5_9FUSO Length = 459 Score = 418 bits (1073), Expect = e-115, Method: Composition-based stats. Identities = 139/432 (32%), Positives = 223/432 (51%), Gaps = 23/432 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + LI + E ++AL++ +L ++ IE ++ NIYKGKI I E FVD Sbjct: 1 MSKCLILSKNTYETKLALLEDDKLEEIYIEREKEKEISGNIYKGKIIDILNKGEIIFVDI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G E++ FL N + NI D L IVQ++ E R KGA LT Sbjct: 61 GLEKNAFLSF---------ENKKNIPKFNIFDSL------IVQVETEARDGKGARLTLDY 105 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDR-TELKEALASLELPEGMGLIVRTAGVGKSAEA 179 S+ G LVL+PN+ + IS++IE + +LK+ +++ GLI+RT V KS EA Sbjct: 106 SINGENLVLLPNS-KNLSISKKIENLETIKKLKDIFLNIDK----GLILRTKSVEKSPEA 160 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 L + I+K + + L++ ++++ +A L +DI E +ID+ Sbjct: 161 LLEEYKKLEAINNQIQKDFKEKN-TTLLYDNNSILKKAL-TLLDEDIDEFIIDDEDSFNK 218 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + + R K K Y + +FS+Y++++QIE A R+V L SG SIVI+ TEAL Sbjct: 219 IKNTLEENKRNYLLKKFKKYFKDEDIFSYYKLDTQIERALDRKVYLESGASIVIEKTEAL 278 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +ID+N+ + T + FNTNLEA EIARQ++LR+L G+I+IDFID+ + ++ + Sbjct: 279 VSIDVNTGQNTGNQSSQNLIFNTNLEACKEIARQIKLRNLAGIIIIDFIDLKKISDRKKI 338 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 L+ +++DR I S GL++ +R+R L C C GT + + + Sbjct: 339 LEELKRYLKKDRMEINSLDFSHLGLVQFTRKRQGKELSFYYREKCHYCEGTSYLLSKDRI 398 Query: 420 SLSILRLIEEEA 431 L++ + + Sbjct: 399 ILNLFAELNSQI 410 >UniRef50_Q8GZQ4 Endoribonuclease n=8 Tax=core eudicotyledons RepID=Q8GZQ4_ARATH Length = 996 Score = 414 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 139/476 (29%), Positives = 233/476 (48%), Gaps = 35/476 (7%) Query: 58 VDYGAERHGFLPLKEIAR-EYFPANYSAHGRPNIKDV-------LREGQEVIVQIDKEER 109 V+ G+E +G +P++ + +N S + +R+G ++IVQ+ KE Sbjct: 491 VEVGSE-NGHIPMERGHSADSLDSNASVAKASKVMSSKDNKWIQVRKGTKIIVQVVKEGL 549 Query: 110 GNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVR 169 G KG LT + L + VL+ R G+S++I G +RT LK +L+ P+G GL VR Sbjct: 550 GTKGPTLTAYPKLRSRFWVLLTRCKRI-GVSKKISGVERTRLKVIAKTLQ-PQGFGLTVR 607 Query: 170 TAGVGKSAEALQWDLSFRLKHWEAIKKAAESRP----------APFLIHQESNVIVRAFR 219 T G S E LQ DL L W+ I A+S P L+H+ + + Sbjct: 608 TVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQ 667 Query: 220 DYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAF 279 DY + ++++D+P+ ++ + PD ++++L+ IPLF Y+IE +IE Sbjct: 668 DYFNDKVEKMVVDSPRTYHEVTHYLQDMA-PDLCNRVELHDKGIPLFDLYEIEEEIEGIL 726 Query: 280 QREVRLPSGGSIVIDSTEALTAIDINSAR--ATRGGDIEETAFNTNLEAADEIARQLRLR 337 + V L +GGS+VI+ TEAL +ID+N +G E+ NL AA +IAR++RLR Sbjct: 727 SKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLR 786 Query: 338 DLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLG 397 D+GG+IV+DFIDM ++R V +++AV +DR+ +++S +SR GL+E++R+R+ PS+ Sbjct: 787 DIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVT 846 Query: 398 ESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQ----------EVHAIVPVPI 447 C C TG V E+ I + I + K + V + Sbjct: 847 FMISEPCSCCHATGRVEALETTFSKIEQEICRQLAKMEKRGDLENPKSWPRFILRVDSHM 906 Query: 448 ASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLP 503 +S+L KR+ + I + V ++ + V + + + Sbjct: 907 SSFLTTGKRTRLA-ILSSSLKVWILLKVARHFTRGTFEVKPFMDEKTVNERQHQVA 961 Score = 88.3 bits (217), Expect = 2e-15, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 +LIN++ R+A+++G +L +L +E + ++Y G IT+ P + AFV+ G+ Sbjct: 331 ILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNIGSA 390 Query: 64 RHGFLPLKEI-AREYFPANYSAHGR 87 RH F+ +K FP + Sbjct: 391 RHSFMDIKSNREPFIFPPFCDGSKK 415 >UniRef50_Q6B930 Ribonuclease E n=1 Tax=Gracilaria tenuistipitata var. liui RepID=Q6B930_GRATL Length = 497 Score = 414 bits (1063), Expect = e-113, Method: Composition-based stats. Identities = 117/378 (30%), Positives = 194/378 (51%), Gaps = 9/378 (2%) Query: 29 IESPGHEQKKANIYKGKITRIEPSLEAAFVDYG-AERHGFLPLKEIAREYFPANYSAHGR 87 I + + + +IY G + +I S+ AAF+ + + GF+ + +I Sbjct: 25 IITINNPYQVNDIYIGTVEKIFTSINAAFIKLNKSGKSGFIHINDIKHL-----KKGKHV 79 Query: 88 PNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDD 147 +I+ VL Q ++VQ+ KE KG LT I L G YLVLMP IS +I + Sbjct: 80 KSIEKVLSINQIILVQVTKEPTIYKGPRLTANIHLHGKYLVLMPFCS-TICISHKIYDHN 138 Query: 148 RTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLI 207 +L L P MGL+++++ G + + DL K W I+KA +P L+ Sbjct: 139 ERTYLYSLGVLLKPGKMGLLIKSSAQGVKEKIILKDLDDLKKQWGFIEKAIIEYSSPLLL 198 Query: 208 HQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSK--IKLYTGEIPL 265 +++ ++I R RD+ + +I+ID+ + L ++ K ++LY + + Sbjct: 199 YKDEDLIKRIIRDFYEDSVTKIIIDSKEGLNQLNYYLYKWNCISNRIKTILQLYNHQKCI 258 Query: 266 FSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLE 325 + I+ I +A + +V+LP GG I+I+S EALT ID+NS + G+ +E TN Sbjct: 259 LDEFYIKHAINNALKPKVKLPYGGHIIIESNEALTVIDVNSGSFNKSGNSKEAILKTNFY 318 Query: 326 AADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLL 385 AA EIA QL++R++ G+I+IDFIDM+ Q + + ++ D A+ QI +S GL+ Sbjct: 319 AAIEIAHQLKIRNINGVIIIDFIDMSSQGDQLQLLEHFSKLLKLDSAKPQIVQLSELGLV 378 Query: 386 EMSRQRLSPSLGESSHHV 403 E++R+R SL E H Sbjct: 379 ELTRRRRGQSLQELFIHE 396 >UniRef50_Q9M498 Endoribonuclease E (Fragment) n=6 Tax=Magnoliophyta RepID=Q9M498_ARATH Length = 575 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 130/407 (31%), Positives = 213/407 (52%), Gaps = 24/407 (5%) Query: 58 VDYGAERHGFLPLKEIAR-EYFPANYSAHGRPNIKDV-------LREGQEVIVQIDKEER 109 V+ G+E +G +P++ + +N S + +R+G ++IVQ+ KE Sbjct: 164 VEVGSE-NGHIPMERGHSADSLDSNASVAKASKVMSSKDNKWIQVRKGTKIIVQVVKEGL 222 Query: 110 GNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVR 169 G KG LT + L + VL+ R G+S++I G +RT LK +L+ P+G GL VR Sbjct: 223 GTKGPTLTAYPKLRSRFWVLLTRCKRI-GVSKKISGVERTRLKVIAKTLQ-PQGFGLTVR 280 Query: 170 TAGVGKSAEALQWDLSFRLKHWEAIKKAAESRP----------APFLIHQESNVIVRAFR 219 T G S E LQ DL L W+ I A+S P L+H+ + + Sbjct: 281 TVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADEGVEGAIPALLHRAMGQTLSVVQ 340 Query: 220 DYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAF 279 DY + ++++D+P+ ++ + PD ++++L+ IPLF Y+IE +IE Sbjct: 341 DYFNDKVEKMVVDSPRTYHEVTHYLQDMA-PDLCNRVELHDKGIPLFDLYEIEEEIEGIL 399 Query: 280 QREVRLPSGGSIVIDSTEALTAIDINSAR--ATRGGDIEETAFNTNLEAADEIARQLRLR 337 + V L +GGS+VI+ TEAL +ID+N +G E+ NL AA +IAR++RLR Sbjct: 400 SKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVNLAAARQIAREIRLR 459 Query: 338 DLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLG 397 D+GG+IV+DFIDM ++R V +++AV +DR+ +++S +SR GL+E++R+R+ PS+ Sbjct: 460 DIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRHGLMEITRKRVRPSVT 519 Query: 398 ESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVP 444 C C TG V E+ I + I + + + Sbjct: 520 FMISEPCSCCHATGRVEALETTFSKIEQEICRQLVSVIISILFCYFS 566 Score = 88.7 bits (218), Expect = 1e-15, Method: Composition-based stats. Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 1/85 (1%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 +LIN++ R+A+++G +L +L +E + ++Y G IT+ P + AFV+ G+ Sbjct: 4 ILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNIGSA 63 Query: 64 RHGFLPLKEI-AREYFPANYSAHGR 87 RH F+ +K FP + Sbjct: 64 RHSFMDIKSNREPFIFPPFCDGSKK 88 >UniRef50_C6LLP4 Cytoplasmic axial filament protein n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLP4_9FIRM Length = 408 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 124/407 (30%), Positives = 192/407 (47%), Gaps = 13/407 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK LI + + AL R +L + NIY GK+ + +++AAFV+ Sbjct: 1 MKNKLIITRLWDGIATALYLDGRAAELSFDRETETPLPGNIYIGKVKNVVKNIQAAFVEI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 +LPL E A YF ++ L G E++VQI +E K +T I Sbjct: 61 EDGISCYLPLSEKAEPYFTNKTNSPR-------LVAGDELLVQIAREGVKTKAPTVTANI 113 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEG-MGLIVRTAGVGKSAEA 179 S G YLVL + GIS ++ +R L++ L PEG G I+RT E Sbjct: 114 SFPGKYLVLTSGKTQT-GISAKLAKAERERLQQIAGRL--PEGNFGWILRTNAAEAEEEE 170 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + + K +E I + A R +++ + +D + + EIL D+ + + Sbjct: 171 ILREAETLAKRFEDICRTARYRTCKSCLYRSPAAWLAHLKDIRQTECEEILTDDQGLYDR 230 Query: 240 ARQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 + ++A P + K+ Y + PL+ Y +E E A + V L SG +VI TEA Sbjct: 231 LQAYLAE-NLPADAEKLSFYEDRLLPLYKLYSLEGAFEEALRERVWLKSGAYLVIQPTEA 289 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 LTAID+N+ + RG ET NLEAA E ARQ+RLR+L G+I+IDFI+M ++ Sbjct: 290 LTAIDVNTGKCERGKKASETFRKINLEAAREAARQIRLRNLSGIILIDFINMDSKEEEQR 349 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCP 405 + L +++D + I+ GL E++R+R+ L E P Sbjct: 350 LLAALDAELQKDPVKAYAVDITPLGLAEVTRKRVQKPLAEKMRQSVP 396 >UniRef50_A7HJB9 Ribonuclease, Rne/Rng family n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HJB9_FERNB Length = 463 Score = 404 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 154/489 (31%), Positives = 251/489 (51%), Gaps = 31/489 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M +L + E+ + AL++ L ++ I E NIY GKI + P+LEAAFV Sbjct: 1 MILLLKKDGENEKAQAALIENGILAEIFISDDDEESIAGNIYIGKIEKFIPALEAAFVKL 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 + + FL +K+I EY + L+E Q+++VQI KE KG +TT I Sbjct: 61 PDDENAFLRIKDIKNEYLNFFGISK--------LQECQKILVQIKKEGGNTKGPQVTTNI 112 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 + G Y+V MP + ++ GISR+I + DR L+E L+ G I+RT+ V E Sbjct: 113 GIPGRYIVYMPFS-KSIGISRKITNENDRKHLREVGEKLKSKYNCGFILRTSCVESKEEY 171 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 ++ + K WE I + LIH+ES+ R++LR+++ +++ ++ K+ + Sbjct: 172 IEKEAEELHKKWEEIVNTFKRSRKTKLIHKESDSDEFVVREFLRKEVEQVITNSQKLKVI 231 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 ++ +P+ K+ E F Y + QI+++ +R LPSGG IVID TEAL Sbjct: 232 SKDF-----KPNIPVKLI----ESDPFEEYNVYKQIQNSMKRIHELPSGGEIVIDKTEAL 282 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+NS T EE + N+EAA EI R +RLR++GG+I+IDFIDM ++ + Sbjct: 283 TIIDVNSGHYTSSESHEELSKKINIEAAKEICRLIRLRNIGGIIIIDFIDMKNEENRLEI 342 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 N ++ +D+ +I++ ++ GLLEM+R+R S SL E +CP C+GTG V + + Sbjct: 343 LNAIKSETLKDKNKIEVYGFTQLGLLEMARKRTSKSLDEKMTALCPVCNGTGHVMSPKFV 402 Query: 420 SLSILRLIEEEALK-ENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 I RL++E K +N +EV + ++ + + V I Sbjct: 403 ---IERLLKEVKNKPKNAKEVIIKFHPSLKEFIN-------KDLLRKTFKVPIHIHF-TH 451 Query: 479 METPHYHVL 487 ++ Y + Sbjct: 452 LDPESYEIT 460 >UniRef50_C0ERY0 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ERY0_9FIRM Length = 403 Score = 404 bits (1038), Expect = e-111, Method: Composition-based stats. Identities = 109/402 (27%), Positives = 181/402 (45%), Gaps = 11/402 (2%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K L+ ++ + +L E + NIY ++ R+ + AF++ G Sbjct: 5 KNKLVITEKEGVICYGYFQDGVPTELYCEPKEQQSILGNIYAARVERVAEGIHGAFLEIG 64 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFIS 121 + + L A P +D L G ++VQI K+ K T IS Sbjct: 65 DNQKCYYSLS--------AEQPVKLSPGHEDKLYGGDIILVQITKDAVKTKLPVGTGNIS 116 Query: 122 LAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQ 181 L G Y V + R GIS++I E E L E G+IVRT G S E L Sbjct: 117 LDGKYFVFTLTDKRT-GISKKIRNTVERERLETLLKKYTREEYGIIVRTNAAGVSEETLT 175 Query: 182 WDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELAR 241 +L +E + + A+ L+++E + ++ + + EIL D+ +V + Sbjct: 176 KELELLQLRYEELMRKAKIATGKTLLYREPPHYITLGKELPAKALDEILTDHAEVFTELK 235 Query: 242 QHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTA 301 ++ D + KI Y L++ Y+ E A+ + + L SG S+VI+ TEA+T Sbjct: 236 EYYKQTSESDTT-KISFYEDTYSLYNLYRFAHYYEEAYGKYIWLKSGASLVIEHTEAMTV 294 Query: 302 IDINSARATRGGDIEET-AFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ID+N+ + E+T + N EAA EIARQLRLR++ G+I+IDFI+M + + Sbjct: 295 IDVNTGSVLKKKKQEDTLFYQINREAAKEIARQLRLRNISGIIMIDFINMKDTAQKEKLL 354 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHH 402 + L ++DR + ++ L+EM+R ++ L E Sbjct: 355 SLLDSECKKDRVHCNVIDMTALNLVEMTRSKVRKPLHEQIRS 396 >UniRef50_A9RK39 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RK39_PHYPA Length = 727 Score = 404 bits (1037), Expect = e-110, Method: Composition-based stats. Identities = 135/450 (30%), Positives = 218/450 (48%), Gaps = 26/450 (5%) Query: 70 LKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129 E R+ P + + + + EG +IVQ+ KE G KG LT F SLAG + VL Sbjct: 247 AWEPHRQGSPITVNFGRKFSKWRNVEEGMPIIVQVKKESMGKKGPRLTAFPSLAGRFWVL 306 Query: 130 MPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLK 189 +P G+S RI G +R LK LA PE +G+ VRT +G E L+ DL+ + Sbjct: 307 IPRGNSV-GVSARITGPERRRLK-LLAQKLQPEDLGITVRTEAIGHEQEELERDLTRLMD 364 Query: 190 HWEAIKKA----------AESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 W+ I + E P L+H+E + RD + + +++D+ + + Sbjct: 365 AWKEIMEKAAAAAVAVERGEEAAVPVLLHREMGQTLTIIRDLFTEKVSRVVVDSAQSFQE 424 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 ++ + P +++ LY+G++P+F + +ES ++ F V+LP+GG +V+ TEAL Sbjct: 425 VINYLQEVA-PHLMNRVVLYSGKVPIFDKFNVESDLDKFFSERVKLPNGGYLVMQETEAL 483 Query: 300 TAIDINSARATRGGD--IEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 +ID+N G E N NL AA +IA ++RLRD+GG+IV+DFIDM ++ Sbjct: 484 VSIDVNGGTGMLGHSMKQREAILNVNLAAAKQIAHEIRLRDIGGIIVVDFIDMDNHEDEK 543 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V +R A+++DR+++ IS IS +GL+EM+R+R+ PS+ + H C C GTG V E Sbjct: 544 LVYEEMRRAIQRDRSKVSISEISEYGLMEMTRKRVRPSVTYTIHSSCACCKGTGRVEALE 603 Query: 418 SLSLSILRLIEEEALKENTQ--------EVHAIVPVPIASYLLNEKRSAVNAIETRQDGV 469 + I R I ++ V + +L + K+ + + + Sbjct: 604 TTLSKIERAIRRVLADHPDVSSDASTWPQILLRVEPSMLEFLKSWKKKRIIQL---GHSL 660 Query: 470 RCVIVPNDQMETPHYHVLRVRKGEETPTLS 499 R I ME H + S Sbjct: 661 RVWINLKLGMELSHGQFEVTEVPRTSSKKS 690 Score = 90.6 bits (223), Expect = 3e-16, Method: Composition-based stats. Identities = 22/95 (23%), Positives = 42/95 (44%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 +LIN ++ R+A+++ +++ + IE + + NIY G++ ++ P + FVD G Sbjct: 73 EILINTSECTMQRMAILENKKVVEFSIEPVNTKVQVGNIYLGRVKQLLPGMSGVFVDIGG 132 Query: 63 ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREG 97 R L + Y G D + G Sbjct: 133 PRLALLDIARNQYPYTFPPVCGSGNHLSTDSVSGG 167 >UniRef50_A0Q1T9 Ribonuclease G n=4 Tax=Clostridium RepID=A0Q1T9_CLONN Length = 481 Score = 400 bits (1028), Expect = e-109, Method: Composition-based stats. Identities = 132/487 (27%), Positives = 246/487 (50%), Gaps = 24/487 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M+ + I + LR+ L + L + IE E IYKG + I P+++ AF+D Sbjct: 1 METIYIEREEG-ILRIVLREDDILKECFIEEEKLEPSPGEIYKGVVKNIVPAIKCAFIDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +++ ++ L + D ++ G EV+V+I KE G KG +T+ I Sbjct: 60 GYDKNAYMYLNHKFKN---------------DDVKNGDEVLVEIMKESLGEKGPKVTSSI 104 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 S+ G Y+V++ +N + G S++IE +D + + ++ P+ +G+++RT + + E + Sbjct: 105 SVPGRYVVIVTHNKKI-GFSKKIEDNDNFK-SYIIDNINKPDDIGIMIRTNALDATIEDI 162 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 +L +++ I + P L++ + R D L + +++++N E Sbjct: 163 NKELEKLYDNYKKIVQEGTYSLKPKLLYNGGGTLGRILNDILTFNTKKVIVNNEDDAEYI 222 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++ + + D +I++Y+G+ LFSHY IE +I S ++ LPSGG+IVID TEA+ Sbjct: 223 KEFVED--KSDLELEIEVYSGKQSLFSHYNIEKEILSLRNNKIVLPSGGNIVIDRTEAMY 280 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ID+NS + T+ I++TA TNLEAA EIARQ+ +R+L G+I+IDFID+ +++ + Sbjct: 281 VIDVNSGKNTKQTSIDKTALVTNLEAAQEIARQIMMRNLSGIIIIDFIDIHNYEYKKKIM 340 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 + L+E ++D+ + I ++ L++++R+R ++ E C C G E L Sbjct: 341 HILKEEFKEDKKKTVIYPFTQLNLVQIARKRRGKAISEYIEEDCSMCHGKSKRIKLEYL- 399 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 +LI++E K + + + I + + +G+ I N Sbjct: 400 ---NKLIKDEITKIDEGYNIKDIYIEIDEIYKKDILGDIIKFIEEIEGMHKSIYVNFISN 456 Query: 481 TPHYHVL 487 ++ V Sbjct: 457 LEYFKVE 463 >UniRef50_A8VZD2 Alanine racemase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VZD2_9BACI Length = 473 Score = 398 bits (1022), Expect = e-109, Method: Composition-based stats. Identities = 134/485 (27%), Positives = 233/485 (48%), Gaps = 17/485 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKR + T E R A+++ R+ + + + I G+IT I ++AAF+D Sbjct: 1 MKRTIAVHTGLTEARGAVIEDGRVTEWLMSPGPTRLETGMIITGQITDIHDGMDAAFIDI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G+++ GFL E+ R I + +G +++++ + KG LT I Sbjct: 61 GSDKRGFLHKSELNRP------DKGEDVPISRQVTKGAYLLLEVLRPGTDTKGPKLTEKI 114 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 S +G Y V MP + R +S+++ + E A L E GLI+RT + E + Sbjct: 115 SFSGKYAVYMPFS-RYVAVSKKMSSESVRESWRAFGKERLQEDEGLIIRTNAEEEDPEVI 173 Query: 181 QWDLSFRLKHWEAIKKAAESRP-APFLIHQESN-VIVRAFRDYLRQDIGEILIDNPKVLE 238 ++ + +K+A +P +H + + + R RD+L + E++ D ++ E Sbjct: 174 DREIDLLRAKADEVKRAFLDQPIKAGAVHVDPSALAARISRDFLADEDTEVICDGRQLYE 233 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 + + + + Y+ E + + V LP+GGS++I+ TEA Sbjct: 234 EL---VREREVMPLGASVSYTRENVA--RLYEFERMMMQTVRPYVWLPNGGSLLIEETEA 288 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 +T ID+NS R T ++ +TA+ TNL+AA IAR+LRLR++ G+I+IDFIDM ++ Sbjct: 289 MTVIDVNSGRFTGKENLRKTAYQTNLQAAKVIARELRLREVSGIILIDFIDMDTDDDRKD 348 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 V LR+ +QDR R+ + + GL+EM+R++ +GE C C GTG V Sbjct: 349 VLKTLRQGCKQDRTRVNVIGFTSLGLVEMTRKKSRMPIGEIMKEPCGCCGGTGRVDTANE 408 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 + ++ EA++ T+ + + V + L + + +AI+ R GVR V Sbjct: 409 QLYRVSEALQ-EAVQGKTESLWLDLNVRLYEALTSNQEDWASAIKARI-GVRV-YVTQSA 465 Query: 479 METPH 483 +TP Sbjct: 466 SDTPF 470 >UniRef50_UPI0001973AFC ribonuclease n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973AFC Length = 441 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 112/428 (26%), Positives = 196/428 (45%), Gaps = 30/428 (7%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 ++LI ++ AL + + L++E NIY GK+ I ++ +AFVD G Sbjct: 6 NKLLI-TRWNGQILTALTEDGKCRSLNLEPADSRGILGNIYIGKVKNIVKNINSAFVDLG 64 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKD--------------------------VLR 95 + + G+ LKE R F +A N K + + Sbjct: 65 SGQIGYYSLKENKRHLFTDEIAAAQAGNRKKTEGEENGTEEGWMKKSDGFPVRAKERLPK 124 Query: 96 EGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEAL 155 G E+IVQ++++ K LT+ ++ G YLVL + G + +G + LK+ L Sbjct: 125 AGDEIIVQVERDAVKTKDPVLTSNLNFTGKYLVLTLGKNQIGFSGKIRDGAWKESLKKIL 184 Query: 156 ASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIV 215 + + G+IVRT +++ +L + + A R L+ V Sbjct: 185 EE-KKDDSFGIIVRTNAREADIQSILRELELLKERKSRLFATAGWRTCYSLLSSSEPSYV 243 Query: 216 RAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGE-IPLFSHYQIESQ 274 + RD +++ I+ D+ + R ++ R D K+ Y +PL Y +++ Sbjct: 244 NSIRDTYAENLEAIVTDDRDCYDALRTYMEENQREDL-EKLSFYEDTMVPLAKLYSLDTA 302 Query: 275 IESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQL 334 +E A + V L SGG +VI+ TEALT ID+N+ + ET N EAA EIARQ+ Sbjct: 303 MEQALGKHVWLKSGGYLVIEPTEALTVIDVNTGKYAGKKTQAETILRINREAAVEIARQM 362 Query: 335 RLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSP 394 +LR+L G+I++DFIDM ++ + L + +D + + +++ GL+E++R+++ Sbjct: 363 QLRNLSGIIIVDFIDMDADEDKKELMRLLELELLRDPVKTVLVEMTKLGLVEITRKKIRR 422 Query: 395 SLGESSHH 402 L E Sbjct: 423 PLAEQVRE 430 >UniRef50_C9L8D6 Ribonucleases G and E n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L8D6_RUMHA Length = 400 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 117/409 (28%), Positives = 212/409 (51%), Gaps = 18/409 (4%) Query: 1 MKRM--LI----NATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLE 54 MK++ LI N L AL R+ L+ S + NIY GK+ I+ +++ Sbjct: 1 MKKLSKLILTEMNYRNTPILVAALEKEGRICQLNPMSLNSDSILGNIYIGKVKNIQKNIQ 60 Query: 55 AAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGA 114 AAF++ +G + +A + P + +VL+ G E+IVQ+ KE +K Sbjct: 61 AAFIEI---ENGIMCYYSMAEKASPCFVNVKKN----NVLKIGDEMIVQVSKEGIKSKLP 113 Query: 115 ALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVG 174 +++ ++ G YLVL + + G S +++ +++ +++E L ++PE +G+IVRT Sbjct: 114 YVSSNLNFTGRYLVLT-SERKELGFSGKLKKEEKKQIREILKD-KIPENVGIIVRTNCRD 171 Query: 175 KSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNP 234 E + +L +K +EA+ + +SR ++ + V+ ++ QD+ EI+ D Sbjct: 172 AQEEEILHELEELMKRYEAVLQKGKSRVCFSVLEKSMPEYVQILQNLYSQDLEEIVTDKQ 231 Query: 235 KVLELARQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVI 293 ++ E A Q++ G ++ Y ++ PL+ Y ++ E A V L SGG +VI Sbjct: 232 ELYECAVQYLK--GYKQQEKIVRYYEDKLLPLYKLYNLQKAFEQAQNERVWLKSGGFLVI 289 Query: 294 DSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPV 353 TEA ID+N+ + T D++ET NLEAA EIA QLRLR+L G+I+IDFI++ Sbjct: 290 QQTEAFVCIDVNTGKCTSKKDMQETFRKINLEAAKEIAWQLRLRNLSGIILIDFINLERA 349 Query: 354 RHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHH 402 + + L++ + QD + + ++ ++E++R+++ SL E Sbjct: 350 EDKEELMQTLQKYLWQDSIKGTVVDMTELNIVEVTRKKVRKSLAEELKE 398 >UniRef50_A7VBE5 Putative uncharacterized protein n=3 Tax=cellular organisms RepID=A7VBE5_9CLOT Length = 388 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 106/407 (26%), Positives = 188/407 (46%), Gaps = 24/407 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M +++I + L A+ +L DL + + +NIY GK+ I +++AAFVD Sbjct: 1 MNKLVITNYEDHILE-AVYSDGKLSDLML--FDRQSILSNIYVGKVENIVANIDAAFVDI 57 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G + + + + A ++ VL+ G E++VQ+ K+ K T+ I Sbjct: 58 GTGLPCYYSISDNKHIFLNAKKNS--------VLKAGDEILVQVSKDAIKTKNPVATSEI 109 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 L L+ N GIS +I + + LA LP+G G I+RT E + Sbjct: 110 ELKTEN--LLVNTSGRIGISGKIRKKETRDHLHQLAKRVLPDGFGCILRTVCQELPDETI 167 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYL----RQDIGEILIDNPKV 236 DLS K + I + A++R +++ + DY + EI+ D V Sbjct: 168 LSDLSELSKQLKQIIQTAKTRTCYSCLYKNDAEYL----DYFILKHNAGLQEIVTDQKLV 223 Query: 237 LELARQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDS 295 + +++ D K+ +Y + L + Y + +E+ + V + SG +VI+ Sbjct: 224 FDEFAMYLSEKQITDV--KLTMYNDKNCNLLTLYNLPRDLENLKKERVWMKSGAYLVIEQ 281 Query: 296 TEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRH 355 TEA+ ID+N+ ++ EE N EAA E+ RQLRLR+L G+IV+DFI+M Sbjct: 282 TEAMVVIDVNTGKSVDKHSFEEHLLRINSEAAVEVCRQLRLRNLSGIIVVDFINMKQPGS 341 Query: 356 QRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHH 402 +++ L + + +D +++ L+E++R+++ SL E Sbjct: 342 MDVIKDILEQELAKDSVPAAFVDVTKLSLVELTRKKIRKSLKEQLTK 388 >UniRef50_O67311 Cytoplasmic axial filament protein n=1 Tax=Aquifex aeolicus RepID=O67311_AQUAE Length = 458 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 126/436 (28%), Positives = 213/436 (48%), Gaps = 28/436 (6%) Query: 21 GQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPA 80 G L D +E + + KG + + P+L+ F+D G + L K+ + Sbjct: 23 GTELKDFKVERRKEKYRTGAFLKGLVKKECPALDGFFLDVGLTKEALLQEKKNCKN---- 78 Query: 81 NYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGIS 140 LR G VIVQ+ ++ER KGA +T +S+ G Y+V P + S Sbjct: 79 -------------LRIGDSVIVQLKRKERDLKGAKVTCKVSIPGKYIVYFPETKKLN-FS 124 Query: 141 RRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAE 199 ++++G TE LK+ L EL + G+I+R + + + E + +L WE++K+ A+ Sbjct: 125 KKLKGFAFTEDLKKILKE-ELNDREGVIIRASAISATKEQILKELQELRNKWESLKEKAK 183 Query: 200 SRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLY 259 L + I + DY I I +DN V + K++ Sbjct: 184 KVNKGILEEGQPQFI-KTILDYWG-FIKNIYVDNGDVWGEIVEFFGD----SIKHKLRYV 237 Query: 260 TGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETA 319 L + I+ + V L +GG IVI+ TEALT+ID+NS T G +EETA Sbjct: 238 NTIDTLPGGITLNQLIDKLTSKTVWLKNGGFIVIEQTEALTSIDVNSGE-TCGKSLEETA 296 Query: 320 FNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHI 379 +N NLEA E+A+Q++ R+L G+I++D IDM + + ++ + +++ + RI+I I Sbjct: 297 YNVNLEALKEVAKQIKFRNLSGIIIVDLIDMKKEKTKESLLSEVKKIFEGEGLRIKIYGI 356 Query: 380 SRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEV 439 ++ GLLEM+++ S S+ E CP C G G V+ E + ++ + +E+ K+ +V Sbjct: 357 TKLGLLEMTKKWESESIYEVIGETCPHCQGKGFVKSKEFILHTLEKALEKTRGKKIVLKV 416 Query: 440 HAIVPVPIASYLLNEK 455 H V + ++ NEK Sbjct: 417 HPSVAKTVEEFI-NEK 431 >UniRef50_B7ANV1 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7ANV1_9BACE Length = 418 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 109/424 (25%), Positives = 197/424 (46%), Gaps = 35/424 (8%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M+R+LI + A+ D + + + E NIY G++ + ++ AAF++Y Sbjct: 1 MQRLLI-TKFNGQTLCAVCDQMTIRTVRV--IEDESILGNIYVGRVENVVNNINAAFIEY 57 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 + G+ L + F P D + G V+VQ+ +E K LT I Sbjct: 58 ARGKKGYYSLTDNEHHIFL-------NPKNNDRMCIGDLVLVQVSREGVKTKEPTLTGRI 110 Query: 121 SLAGSYLVLMPNN---PRAGGISRRIEGDDRTELKEALASLELPE--------------- 162 + G Y L + + IS++I +DR + + + Sbjct: 111 GITGRYCALTLDCKSENSSVFISKKITDEDRRSYLKGIVKDAMNNALNAYTASSVNSIPT 170 Query: 163 ----GMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAF 218 +IVRT E + ++S + I K A +R ++ + Sbjct: 171 ASDMHFNIIVRTNAEDAPEEPVTAEVSRIVTTMCDILKDAVTRKGLTRMYSPEESCLEDV 230 Query: 219 RDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTG-EIPLFSHYQIESQIES 277 ++ ++ +I+ D P+V + R+++ P ++K++ Y ++PL Y +ESQI + Sbjct: 231 QNMRATNLEKIITDIPEVYDSVRRYLGE-NEPGEAAKLEFYDDMQLPLNKLYSVESQIST 289 Query: 278 AFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEE-TAFNTNLEAADEIARQLRL 336 A + V LPSGG +VI+ TEALT ID+NS + T +++ T N+EAA EI RQL L Sbjct: 290 ALNKRVWLPSGGYLVIEPTEALTVIDVNSGKFTGNRKLKDNTYLKINMEAAVEIGRQLML 349 Query: 337 RDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSL 396 R+L G+IV+DFI++ ++ + + L + ++ D + ++R GL+E++R+++ L Sbjct: 350 RNLSGIIVVDFINLNTFEEKKELMSYLADILKADTVPTSVVDMTRLGLVEITRKKIRKPL 409 Query: 397 GESS 400 E Sbjct: 410 HEVI 413 >UniRef50_C7G7S7 Ribonuclease, Rne/Rng family n=2 Tax=Roseburia RepID=C7G7S7_9FIRM Length = 418 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 113/425 (26%), Positives = 202/425 (47%), Gaps = 31/425 (7%) Query: 1 MKRMLINATQQE--ELRVALVDG--QRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAA 56 M R +I T+ E E R+A + Q+L ++ ES NIY G++ + +L AA Sbjct: 1 MNRFIITTTEIEKKEYRIAALCDARQKLIEVTTESMTGTSVLGNIYIGRVENVVKNLNAA 60 Query: 57 FVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL 116 FV ++ +LPL+E+ F S K + G E++VQ+ KE K ++ Sbjct: 61 FVCIAPGQNCYLPLQELKNPIFTKKQSE------KKAICAGDELLVQVVKEALKTKDPSV 114 Query: 117 TTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEG---MGLIVRTAGV 173 +T ++ G Y++L + G S ++ + R +L + + + G++VRT Sbjct: 115 STNLTFTGKYVILTTGKRKIGASS-KLPKEKREKLLKIVEDFLSGKEQIPYGVVVRTNAA 173 Query: 174 GKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDN 233 S E L +L+ + I A+ L+H+E + ++GE++ D+ Sbjct: 174 QASKEELLLELAQLEAEVQKIISGAKYLIRYSLVHKEEQPWQKMLNGLYETELGEVVTDD 233 Query: 234 PKVLELARQHIAALGR----------------PDFSSKIKLYTGE-IPLFSHYQIESQIE 276 ++ E + KI+ Y E + L + I SQ+ Sbjct: 234 REIFETICNMYGVGAKQLVTGGSVRSRVDEILTGHGLKIRYYEDEMVSLSALSGITSQLH 293 Query: 277 SAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRL 336 A + V L SG ++I TEALT ID+N+ + +++E N+EAA+EIARQLRL Sbjct: 294 DALRERVWLKSGAYLIIQPTEALTVIDVNTGKNIAKKEMQENFLKVNIEAAEEIARQLRL 353 Query: 337 RDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSL 396 R++ G++++DFI++ + + N A+++D QI +++ GL+E++R+++ SL Sbjct: 354 RNISGIVIVDFINLEAKSAESELLNVFGAALKKDPVPTQIVEMTKLGLVEVTRKKIKKSL 413 Query: 397 GESSH 401 ES Sbjct: 414 RESLS 418 >UniRef50_D0MD03 Ribonuclease, Rne/Rng family n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MD03_RHOM4 Length = 604 Score = 384 bits (986), Expect = e-104, Method: Composition-based stats. Identities = 141/422 (33%), Positives = 222/422 (52%), Gaps = 12/422 (2%) Query: 84 AHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI 143 H + + +L+ Q ++V+I KE +KG+ ++T ISLAG +LVL+P +S++I Sbjct: 171 PHADVSPETLLKRDQPLLVKIIKEPISSKGSRVSTDISLAGRFLVLVPFANYV-AVSKKI 229 Query: 144 EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKA-AESRP 202 ALA LPEG G+IVRT G++A+AL DL L+ WE I+K AE Sbjct: 230 TSYKERRRLRALARSLLPEGFGVIVRTVAEGQTAKALDTDLRLLLEKWERIEKKLAEHPK 289 Query: 203 APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGE 262 P L+H++ N++ RD +D IL+DNP++ R ++ A+ P ++LY G+ Sbjct: 290 PPVLLHEDVNMVSSVIRDLFSEDCTRILVDNPRLHRNIRSYVQAVA-PHKVEVVQLYRGK 348 Query: 263 IPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNT 322 +F I Q+ AF+ V LPSGG + I+ TEA+ ID+NS RA RG EE + Sbjct: 349 EHIFKATGIAEQVAQAFESRVDLPSGGYLYIEHTEAMHVIDVNSGRAGRGLSQEENSLRV 408 Query: 323 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRF 382 NLEAA IA+Q+R+RDLGG+IVIDFID+ ++++ V + L++ R+DRA +I +S F Sbjct: 409 NLEAARVIAQQVRVRDLGGIIVIDFIDLKDEKNKKKVYDELKKEFRKDRAVTKILPMSDF 468 Query: 383 GLLEMSRQRLSPSLGESSHHVCPRCSGTGTVR-------DNESLSLSILRLIEEEALKEN 435 GL++++RQRL PSL + + R + + E+L ++ R ++ Sbjct: 469 GLVQITRQRLRPSLTTTFDKMAERLA-REKILPPAPSQPTPEALLEAMERWLQAYRHAGG 527 Query: 436 TQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEET 495 + V V A+YL + + VR + + + GE+ Sbjct: 528 RRNVTLRVHPFTAAYLTRRVPTYPTRWLLKHL-VRVRLESDPNQPPLSFRFEDPATGEDL 586 Query: 496 PT 497 Sbjct: 587 TE 588 Score = 102 bits (255), Expect = 7e-20, Method: Composition-based stats. Identities = 27/75 (36%), Positives = 46/75 (61%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + +I ++++ R+A+V+ L + IE P HE+ NIY ++ R+ PS++AAFVD Sbjct: 1 MAKEIIINAEKDQTRIAIVEDGTLAEFYIEDPEHERTIGNIYLARVCRVMPSIQAAFVDI 60 Query: 61 GAERHGFLPLKEIAR 75 G ++ FL +IA Sbjct: 61 GQQQDAFLHFSDIAP 75 >UniRef50_A7B8M6 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A7B8M6_RUMGN Length = 413 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 102/403 (25%), Positives = 188/403 (46%), Gaps = 17/403 (4%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQ----KKANIYKGKITRIEPSLEAAFV 58 R ++ ++ ++ L++ + ++ P +Q +IY GK+ I ++ AAF+ Sbjct: 4 RKILMLKKEGKIWTFLLENDVIAEIHCSLPDSDQHRQPVLGDIYIGKVKNIAANIGAAFI 63 Query: 59 DYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 + + + L + + F K L G E++VQI +E K +++ Sbjct: 64 EIAPGKECYYDLSQAPQAIFTHKIG-------KKPLCIGDELVVQISREAVKTKAPTVSS 116 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAE 178 I+ G Y VL N R G S ++ R KE L+ L+ E GLI+RT E Sbjct: 117 NINFTGRYAVLTTGNTRIGT-SGKLPRSLRDTYKEKLSHLK-NEDYGLIIRTNAKDVPFE 174 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 + ++ +K+ A R + + + ++ + I+ D+PK+ + Sbjct: 175 TVLEEIQKLENACVKLKETAPFRTCFSCLQEAPPSYITDLKNVYADGLSAIITDDPKLYQ 234 Query: 239 LARQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 + A +P+ SK++ Y ++ PL Y + +E A + V L +G +VI TE Sbjct: 235 QIHGFLQA-EQPEDLSKLQFYEEQLLPLSKLYSTDIAVERALKEYVWLKNGAYLVIQPTE 293 Query: 298 ALTAIDINSARAT--RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRH 355 ALT +D+NS + + ET NLEAA E ARQ+RLR++ G+I+IDFI+M Sbjct: 294 ALTVVDVNSGKYSAKTKKKSAETYLKINLEAAKETARQIRLRNISGIILIDFINMDDPDM 353 Query: 356 QRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGE 398 + + + R + +D + + ++ L+E++R+++ L E Sbjct: 354 MQELLKQFRRFLGEDPIQTSVVDVTALQLVEVTRKKVRRPLHE 396 >UniRef50_UPI0001BC3959 ribonuclease G n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC3959 Length = 386 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 107/405 (26%), Positives = 193/405 (47%), Gaps = 24/405 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK+++I +++ V L + + ++ + NIY G++ ++ P++ +AFV+ Sbjct: 1 MKKLVITGYREKNTAV-LFEDGKETEIRVI-EEEGSILNNIYVGRVNKVVPNINSAFVEI 58 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 +LP+ E + D + +G V+VQ+ K+ K +T + Sbjct: 59 SKGIICYLPINE--------EHVIFLNRKNTDKVCQGDIVLVQVVKDAIKTKRPMVTCKL 110 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDR-TELKEALASLELPEGMGLIVRTAGVGKSAEA 179 +++G Y+ + +N G+S++I R ELK L E G IVRT + Sbjct: 111 NISGKYVAISFDNKGIIGVSKKITDSRRIAELKTLLKEYATDE-YGFIVRTEAEHADNKD 169 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + + + +E I + + RPA LI + N + + E++ D P++ E Sbjct: 170 ICDEALKLVNEFEDIVRISSMRPAFTLIKKGGNSVDDMVSSMKLRKEDEVITDIPEIYE- 228 Query: 240 ARQHIAALGRPDFSSKIKLYTGE-IPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 D + LY I L + Y IE I A + V L GG +VI+ TEA Sbjct: 229 --------ALSDKEYTVSLYQDTMISLKTLYNIEKIINDALSKYVWLKRGGYLVIEQTEA 280 Query: 299 LTAIDINSARATRG-GDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 LT ID+N+ + D E+T N+EAA+E+ RQLRLR++ G++V+DFI+M + + Sbjct: 281 LTVIDVNTGKYDGKDKDREDTFLKINMEAAEEVERQLRLRNISGIVVVDFINMKD-DNIK 339 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHH 402 + + L +++D + + ++ GL+E++RQ++ SL E Sbjct: 340 ILTDELCTQLKKDIVKCKYVDYTKLGLVEITRQKIRRSLIEYFTK 384 >UniRef50_A6MVU3 Ribonuclease E n=1 Tax=Rhodomonas salina RepID=A6MVU3_RHDSA Length = 429 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 112/403 (27%), Positives = 181/403 (44%), Gaps = 11/403 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + L+ A Q + V + + L IE +IY G + + PS+ AAF+ Sbjct: 1 MVKTLVLAEQNKIGSV-YDNDTVITQLIIERGT--YHIGDIYIGIVETVLPSINAAFIIL 57 Query: 61 GAERH-GFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 + GF+ + + N NI + L V+VQ+ KE G KG +T Sbjct: 58 DYSENNGFIHINNLGHLKKKTN-----STNITNHLSCNSIVMVQVLKEPNGQKGPTVTGD 112 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 I+L G YL L+P SR E ++ L +L P+ G+++ + S Sbjct: 113 ITLRGRYLTLLPFEEDI-FFSRDFESNENIVYLRLLFTLLKPKSTGILINKKAIHASINN 171 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + D L W++I + APFLI + N I + + + + IL+D+ + + Sbjct: 172 IIQDFYSLLYEWDSICHNLNYQSAPFLISRNKNFISKVLQKVYSEKVDTILVDSKQGSKK 231 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSH-YQIESQIESAFQREVRLPSGGSIVIDSTEA 298 + + ++ Y F Y ++ + Q + L GG I+I+ TEA Sbjct: 232 IASTVTRWIKQKNNTLSIKYFENHNFFVRDYNLDLIVYDLLQSRINLLGGGYIIIEKTEA 291 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 LT ID+NS + ET N +AA +IAR LRLR++ G+I++DFIDM + Q A Sbjct: 292 LTTIDVNSGSFNYLNNPRETILLVNRKAAKQIARHLRLRNISGVIIVDFIDMKNQQDQLA 351 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSH 401 + ++QD R +I S GL+E++R+R SL E Sbjct: 352 LLLHFDSFLKQDEQRPRIIQFSELGLVELTRKRQGRSLLEMFS 394 >UniRef50_A0AIZ2 Complete genome n=21 Tax=Listeria RepID=A0AIZ2_LISW6 Length = 453 Score = 367 bits (942), Expect = 1e-99, Method: Composition-based stats. Identities = 126/453 (27%), Positives = 218/453 (48%), Gaps = 30/453 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK+++INA E+ RVA+++ L D++I P + + +I+ G I +I+ ++AAFVD Sbjct: 1 MKKLIINAAHIEK-RVAVLEDDTLIDMEIIRPSEKVQVGDIFYGFIQKIDRKMDAAFVDL 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G + GF+ LK+I E F N +G ++ VQI +E K L+ + Sbjct: 60 GNQNKGFIHLKDI-PEIFEKN--------------QGAKIPVQIVREGSATKLPLLSAVL 104 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 G L+ + IS+RI + LK+ + L L E +I+R+ S E L Sbjct: 105 EFPGDLLIYLHGKEYV-SISKRIADKE--PLKKIM-ELLLDENEAVIIRSNAENSSNEQL 160 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQE-SNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + L+ + ++ + K A +R P L+ S V A + R EI+ D+ + + Sbjct: 161 EIALNQAREKYQLLIKDAATRKKPGLLLSAASGVFTSAKQFIQRYSPTEIMTDDFEFAKT 220 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 H F ++ + LF+ I+SQIE + V LP+G S+ I+ TEA+ Sbjct: 221 LEVH--------FPNREIVLKKSSDLFADIGIKSQIERLSRPVVHLPNGSSLFIEKTEAM 272 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 ID+NS+R E+T + N++A EI R +RLR++ G+I++DFI + Sbjct: 273 WVIDVNSSRFKGTAAKEKTVESVNIKAVPEIFRHIRLRNMSGMIIVDFIGGMSEAGHEEL 332 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 + R++ QI+ +S+ GLL+++R++ S E + CP C GTG V ++L Sbjct: 333 YEAIERQSREEYTTTQIAALSQSGLLQLTRRKKQQSFLEFTTIPCPVCYGTGHVASKDTL 392 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLL 452 + + R + ++ + I + L Sbjct: 393 AFQLEREL-AGIMQGEPNSIQIITTEDVLDAFL 424 >UniRef50_C4Z0A7 Ribonuclease G n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z0A7_EUBE2 Length = 409 Score = 366 bits (938), Expect = 4e-99, Method: Composition-based stats. Identities = 94/396 (23%), Positives = 195/396 (49%), Gaps = 33/396 (8%) Query: 27 LDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHG 86 ++ NIY G++ + ++ AAF++ ++ + +++ P ++ Sbjct: 26 HYLKPLDSGSVVGNIYVGRVENVVKNINAAFIEIEDKQKCYYSIQD---NKAPIFFNEKN 82 Query: 87 RPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD 146 P I +G ++V++ E K A +++ I L G+Y V + N+ + IS++I+ + Sbjct: 83 NPAI----CQGDRILVKVTTEPLKTKPAKVSSKIELTGNYAV-VSNDVKGVHISKKIKSN 137 Query: 147 DR-TELKEALASLELPE--------------GMGLIVRTAGVGKSAEALQWDLSFRLKHW 191 + +E+K+ +A + + + G+I+R+ + + D+ + Sbjct: 138 ETISEIKKRVADILIQKQREAIEKTGYDYLSNFGIILRSGCADADTDDIIKDVKALCNEY 197 Query: 192 EAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPD 251 + + A L+H++ + +D E++ D P + ++ Sbjct: 198 TDMLRKAVFSKFYTLVHKDRPEYIEEIVHLSGKDRVEVITDIPDIYNELETYLPRSSNMS 257 Query: 252 FSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 I++Y E+ PL+ Y IE +I++A ++V L SGG ++I+ TEAL+ ID+NS + Sbjct: 258 ----IRMYKDELWPLYKLYSIEKEIDTALSKKVWLKSGGYLIIEQTEALSVIDVNSGKNV 313 Query: 311 RGGD----IEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREA 366 IE +A TNLEAAD++ +Q+++R+L G+I++DFI+M R+ + L+ Sbjct: 314 TKAKSMEAIEASALKTNLEAADKLCQQIKVRNLSGIIIVDFINM-NQRNCDILMEHLKFL 372 Query: 367 VRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHH 402 ++D I I++ GL+E++R+++ SL ES + Sbjct: 373 AKKDIVNTTIVDITKLGLVEITRKKIGKSLSESLNK 408 >UniRef50_C4Z9Z5 Ribonuclease G and E n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4Z9Z5_EUBR3 Length = 402 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 109/415 (26%), Positives = 194/415 (46%), Gaps = 28/415 (6%) Query: 1 MKRMLINATQQEE---LRVALV-DGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAA 56 M R+++ T + AL+ + D + P + NIY ++ +I P + AA Sbjct: 1 MNRIILTKTVKNNKTYTVYALMDENGNYKDFQL-LPEKDTIINNIYAARVNKILPGINAA 59 Query: 57 FVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL 116 FV + +L L + + S K+ L EG E++VQ+ K+ K + Sbjct: 60 FVTIAQNKSCYLSLNDAKNPVYTNKKSK------KEGLCEGDEILVQVIKDALKTKDPVV 113 Query: 117 TTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEAL---ASLELPEGMGLIVRTAGV 173 TT +S+ GS V++ N G+S +++ + L++A+ + EG G+IVRT Sbjct: 114 TTKLSIFGSN-VILTNFDTQIGVSSKLDKERAALLRKAVLLSCADHEKEGYGIIVRTNAK 172 Query: 174 GKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH---QESNVIVRAFRDYLRQDIGEIL 230 +A+ D + ++ I K A + ++ + ++++ D+ + I Sbjct: 173 NVEDKAVSQDAYSVAQKYDQIIKKAPHQALYSCVYHGMSDYLLLMKTI-DFAT--VEWIK 229 Query: 231 IDNPKVLELARQHIAALGRPDFSS-KIKLYTGE-IPLFSHYQIESQIESAFQREVRLPSG 288 D + + + G D + KI Y I + + Y I I++ R V L G Sbjct: 230 TDCDDIYDSL---LTEYGIYDHAPEKIMRYDDSAISMSTLYGIRGLIDNLTSRRVWLDCG 286 Query: 289 GSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFI 348 G+I+I+ E LT ID+NSA+ G + TN+EAA EIARQLRLR++ G+I+IDFI Sbjct: 287 GNIIIEQLETLTFIDVNSAKNISSGS--NSILKTNMEAAKEIARQLRLRNISGMIIIDFI 344 Query: 349 DMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHV 403 +M + + L+ ++ D I++ GL+E++R+++ SL + Sbjct: 345 NMKSEASKDTLIEELKRYIKDDNTVCTFVDITKLGLVELTRKKVHKSLKQILEKT 399 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P21513 Ribonuclease E n=119 Tax=Gammaproteobacteria Rep... 782 0.0 UniRef50_Q492Q0 Ribonuclease E n=1 Tax=Candidatus Blochmannia pe... 685 0.0 UniRef50_Q8K9J9 Ribonuclease E n=5 Tax=Buchnera aphidicola RepID... 676 0.0 UniRef50_C4X6M8 RNase E n=25 Tax=Gammaproteobacteria RepID=C4X6M... 655 0.0 UniRef50_B0BR35 Ribonuclease E n=14 Tax=Pasteurellaceae RepID=B0... 632 e-179 UniRef50_P44443 Ribonuclease E n=98 Tax=Gammaproteobacteria RepI... 618 e-175 UniRef50_C9R616 Ribonuclease E (RNase E) n=2 Tax=Gammaproteobact... 606 e-171 UniRef50_C8PW15 Ribonuclease E n=1 Tax=Enhydrobacter aerosaccus ... 592 e-167 UniRef50_Q7MM07 Ribonuclease E n=15 Tax=Gammaproteobacteria RepI... 592 e-167 UniRef50_A8PMW2 Ribonuclease E (RNase E) n=1 Tax=Rickettsiella g... 590 e-167 UniRef50_B3T2A0 Putative S1 RNA-binding domain protein n=2 Tax=p... 576 e-162 UniRef50_C8N8A8 Ribonuclease G and E n=19 Tax=Proteobacteria Rep... 575 e-162 UniRef50_Q89AH3 Putative truncated ribonuclease E n=22 Tax=Bacte... 569 e-160 UniRef50_Q1PY04 Strongly similar to ribonuclease E (RNase E) n=1... 569 e-160 UniRef50_A1HNZ2 Ribonuclease, Rne/Rng family n=1 Tax=Thermosinus... 569 e-160 UniRef50_B5EL09 Ribonuclease, Rne/Rng family n=2 Tax=Acidithioba... 568 e-160 UniRef50_C8W5Q7 Ribonuclease, Rne/Rng family n=11 Tax=Bacteria R... 568 e-160 UniRef50_Q2YA54 Ribonuclease E n=7 Tax=Betaproteobacteria RepID=... 566 e-159 UniRef50_B4RR31 Rne n=31 Tax=Neisseriaceae RepID=B4RR31_NEIG2 565 e-159 UniRef50_A5EVP9 Ribonuclease g n=16 Tax=Gammaproteobacteria RepI... 564 e-159 UniRef50_A9ADG1 Ribonuclease, Rne/Rng family n=89 Tax=Betaproteo... 562 e-158 UniRef50_B0TYI3 Ribonuclease E n=18 Tax=Francisella RepID=B0TYI3... 559 e-157 UniRef50_C5AD76 Ribonuclease E n=21 Tax=Proteobacteria RepID=C5A... 559 e-157 UniRef50_A5WCP3 RNAse E n=3 Tax=Proteobacteria RepID=A5WCP3_PSYWF 557 e-157 UniRef50_A8ZW09 Ribonuclease, Rne/Rng family n=2 Tax=Desulfobact... 557 e-156 UniRef50_Q0VQP0 Phosphoric diester hydrolase n=5 Tax=Gammaproteo... 556 e-156 UniRef50_C5BU48 Ribonuclease E n=1 Tax=Teredinibacter turnerae T... 555 e-156 UniRef50_B1H0J1 Ribonuclease G n=1 Tax=uncultured Termite group ... 555 e-156 UniRef50_B6BTS7 Ribonuclease E n=2 Tax=Betaproteobacteria RepID=... 554 e-156 UniRef50_B0VJP4 Ribonuclease G n=1 Tax=Candidatus Cloacamonas ac... 553 e-155 UniRef50_B3DX65 Ribonuclease G and E n=7 Tax=Verrucomicrobia Rep... 552 e-155 UniRef50_D2R4N9 Ribonuclease, Rne/Rng family n=2 Tax=Planctomyce... 552 e-155 UniRef50_A4XJ17 Ribonuclease G n=7 Tax=Clostridia RepID=A4XJ17_C... 551 e-155 UniRef50_A1AW88 Ribonuclease, Rne/Rng family n=3 Tax=Gammaproteo... 551 e-155 UniRef50_A7C082 Ribonuclease G and E n=1 Tax=Beggiatoa sp. PS Re... 551 e-155 UniRef50_A3JIF1 Ribonucleases G and E n=2 Tax=Gammaproteobacteri... 550 e-155 UniRef50_A0LJB4 RNAse E n=1 Tax=Syntrophobacter fumaroxidans MPO... 550 e-154 UniRef50_Q2RSE6 RNAse E n=1 Tax=Rhodospirillum rubrum ATCC 11170... 549 e-154 UniRef50_C7RBE6 Ribonuclease, Rne/Rng family n=1 Tax=Kangiella k... 549 e-154 UniRef50_Q2SK60 Ribonucleases G and E n=3 Tax=Gammaproteobacteri... 549 e-154 UniRef50_Q2P196 Ribonuclease E n=28 Tax=Proteobacteria RepID=Q2P... 548 e-154 UniRef50_Q1YTQ8 Ribonuclease E n=1 Tax=gamma proteobacterium HTC... 546 e-153 UniRef50_C4PNX0 Ribonuclease E n=17 Tax=Chlamydiales RepID=C4PNX... 542 e-152 UniRef50_B8FM65 Ribonuclease, Rne/Rng family n=1 Tax=Desulfatiba... 542 e-152 UniRef50_B5JUW5 Ribonuclease E n=1 Tax=gamma proteobacterium HTC... 542 e-152 UniRef50_B0VED2 Ribonuclease E (RNase E): endoribonuclease for r... 541 e-152 UniRef50_A4A8E4 Ribonuclease E n=5 Tax=unclassified Gammaproteob... 541 e-152 UniRef50_Q0A8Q8 Ribonuclease E n=8 Tax=Gammaproteobacteria RepID... 541 e-152 UniRef50_Q1QX63 Ribonuclease E n=5 Tax=Gammaproteobacteria RepID... 537 e-151 UniRef50_D0LZK2 Ribonuclease, Rne/Rng family n=1 Tax=Haliangium ... 537 e-151 UniRef50_A6GBN9 Ribonuclease G n=1 Tax=Plesiocystis pacifica SIR... 533 e-149 UniRef50_D0L1K6 Ribonuclease, Rne/Rng family n=1 Tax=Halothiobac... 532 e-149 UniRef50_C9KMZ9 Ribonuclease G n=2 Tax=Veillonellaceae RepID=C9K... 532 e-149 UniRef50_C0VHW5 Ribonuclease E (RNase E): endoribonuclease for r... 531 e-149 UniRef50_Q0AWI9 RNAse G n=1 Tax=Syntrophomonas wolfei subsp. wol... 529 e-148 UniRef50_B8DIL9 Ribonuclease, Rne/Rng family n=3 Tax=Desulfovibr... 527 e-147 UniRef50_C0R3W8 Ribonuclease, Rne/Rng family protein n=9 Tax=Wol... 526 e-147 UniRef50_UPI0001C430FE cytosolic axial filament protein n=1 Tax=... 526 e-147 UniRef50_D1B5Z1 Ribonuclease, Rne/Rng family n=3 Tax=Synergistac... 525 e-147 UniRef50_D1BNE2 Ribonuclease, Rne/Rng family n=3 Tax=Veillonella... 522 e-146 UniRef50_C0WDS2 Ribonuclease n=1 Tax=Acidaminococcus sp. D21 Rep... 522 e-146 UniRef50_B8CXZ3 Ribonuclease, Rne/Rng family n=1 Tax=Halothermot... 522 e-146 UniRef50_D2RM73 Ribonuclease, Rne/Rng family n=1 Tax=Acidaminoco... 519 e-145 UniRef50_A8MHL2 Ribonuclease, Rne/Rng family n=2 Tax=Alkaliphilu... 518 e-145 UniRef50_Q0F3G3 Ribonucleases G and E n=1 Tax=Mariprofundus ferr... 516 e-144 UniRef50_Q2LU58 Ribonuclease E n=1 Tax=Syntrophus aciditrophicus... 516 e-144 UniRef50_A6VXP7 Ribonuclease, Rne/Rng family n=3 Tax=Gammaproteo... 516 e-144 UniRef50_Q6FEY0 Ribonuclease E (RNase E): endoribonuclease for r... 512 e-143 UniRef50_Q0ABM4 Ribonuclease G n=2 Tax=Proteobacteria RepID=Q0AB... 511 e-143 UniRef50_Q11NU1 Ribonuclease G n=10 Tax=Bacteroidetes RepID=Q11N... 511 e-143 UniRef50_C6JJB6 Ribonuclease G and E n=2 Tax=Fusobacterium RepID... 510 e-142 UniRef50_B2KEH9 Ribonuclease, Rne/Rng family n=1 Tax=Elusimicrob... 509 e-142 UniRef50_B0TWF6 Ribonuclease G n=17 Tax=Francisella RepID=B0TWF6... 508 e-142 UniRef50_C6D805 Ribonuclease, Rne/Rng family n=3 Tax=Bacillales ... 508 e-142 UniRef50_C1A932 Ribonuclease G n=1 Tax=Gemmatimonas aurantiaca T... 507 e-141 UniRef50_A0LIP4 RNAse G n=22 Tax=Bacteria RepID=A0LIP4_SYNFM 506 e-141 UniRef50_D1N7U6 Ribonuclease, Rne/Rng family n=2 Tax=Lentisphaer... 506 e-141 UniRef50_Q1MQA2 Ribonucleases G and E n=2 Tax=Desulfovibrionacea... 504 e-141 UniRef50_P0A9J2 Ribonuclease G n=523 Tax=cellular organisms RepI... 503 e-140 UniRef50_C6ADR1 Ribonuclease E n=5 Tax=Rhizobiales RepID=C6ADR1_... 503 e-140 UniRef50_C9RQU1 Ribonuclease, Rne/Rng family n=1 Tax=Fibrobacter... 502 e-140 UniRef50_A6LDG7 Ribonuclease G n=21 Tax=Bacteria RepID=A6LDG7_PARD8 502 e-140 UniRef50_B5JNK0 Ribonuclease, Rne/Rng family n=1 Tax=Verrucomicr... 498 e-139 UniRef50_B6YQX9 Ribonuclease G n=23 Tax=Bacteroidales RepID=B6YQ... 495 e-138 UniRef50_A8FWL8 Ribonuclease, Rne/Rng family n=38 Tax=Gammaprote... 494 e-138 UniRef50_Q1NUM8 Ribonuclease E and G n=2 Tax=Deltaproteobacteria... 493 e-137 UniRef50_UPI0001C31D95 ribonuclease, Rne/Rng family n=1 Tax=Cone... 493 e-137 UniRef50_B0SXB4 Ribonuclease, Rne/Rng family n=2 Tax=Alphaproteo... 492 e-137 UniRef50_B0K422 Ribonuclease, Rne/Rng family n=12 Tax=Thermoanae... 491 e-137 UniRef50_C1DR24 Ribonuclease E n=27 Tax=Gammaproteobacteria RepI... 489 e-136 UniRef50_Q0BVH1 Ribonuclease E n=2 Tax=Acetobacteraceae RepID=Q0... 489 e-136 UniRef50_D1I512 Whole genome shotgun sequence of line PN40024, s... 489 e-136 UniRef50_B8GWM7 Ribonuclease E n=6 Tax=Caulobacteraceae RepID=B8... 487 e-135 UniRef50_C3W9J7 Ribonuclease G and E n=1 Tax=Fusobacterium morti... 483 e-134 UniRef50_C9LKU5 Cytoplasmic axial filament protein n=1 Tax=Diali... 483 e-134 UniRef50_C5CEM0 Ribonuclease, Rne/Rng family n=1 Tax=Kosmotoga o... 482 e-134 UniRef50_C4K6Y9 RNase G (Ribonuclease G) n=2 Tax=Enterobacteriac... 480 e-133 UniRef50_A3ZLB1 Ribonuclease E n=4 Tax=Planctomycetaceae RepID=A... 479 e-133 UniRef50_Q83MU7 Ribonuclease G n=2 Tax=Tropheryma whipplei RepID... 479 e-133 UniRef50_Q92QJ4 Probable ribonuclease E n=1 Tax=Sinorhizobium me... 477 e-132 UniRef50_D2NSV3 Ribonuclease G and E n=2 Tax=Rothia mucilaginosa... 477 e-132 UniRef50_A6LNV2 Ribonuclease, Rne/Rng family n=2 Tax=Thermosipho... 477 e-132 UniRef50_B1I4P9 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus ... 475 e-132 UniRef50_Q9K8J2 Ribonuclease G (Cytosolic axial filament protein... 475 e-132 UniRef50_D2LS23 Ribonuclease, Rne/Rng family n=1 Tax=Bacillus ce... 474 e-132 UniRef50_C6E0U6 Ribonuclease, Rne/Rng family n=8 Tax=Desulfuromo... 474 e-131 UniRef50_Q7CZH1 Ribonuclease E n=7 Tax=Alphaproteobacteria RepID... 473 e-131 UniRef50_A5FJP9 Ribonuclease, Rne/Rng family n=29 Tax=Bacteroide... 471 e-131 UniRef50_A5I670 Ribonuclease G n=12 Tax=Clostridium RepID=A5I670... 470 e-130 UniRef50_Q5WES2 Ribonuclease G n=1 Tax=Bacillus clausii KSM-K16 ... 470 e-130 UniRef50_Q2IVP9 RNAse E n=3 Tax=Bradyrhizobiaceae RepID=Q2IVP9_R... 469 e-130 UniRef50_C6MTB8 Ribonuclease, Rne/Rng family n=1 Tax=Geobacter s... 469 e-130 UniRef50_Q2GES6 Ribonuclease, Rne/Rng family n=2 Tax=Neoricketts... 468 e-130 UniRef50_C3WSU7 Ribonuclease G n=6 Tax=Fusobacterium RepID=C3WSU... 468 e-130 UniRef50_C7LYB0 Ribonuclease, Rne/Rng family n=1 Tax=Acidimicrob... 468 e-130 UniRef50_C1PAJ8 Ribonuclease, Rne/Rng family n=1 Tax=Bacillus co... 468 e-130 UniRef50_C8WCX7 Ribonuclease, Rne/Rng family n=3 Tax=Zymomonas m... 466 e-129 UniRef50_B9JDP7 Ribonuclease E protein n=3 Tax=Alphaproteobacter... 464 e-129 UniRef50_C9M9G5 Ribonuclease G n=1 Tax=Jonquetella anthropi E3_3... 463 e-128 UniRef50_A8F3K6 Ribonuclease, Rne/Rng family n=1 Tax=Thermotoga ... 463 e-128 UniRef50_B6JHD4 Ribonuclease E (RNase E) n=19 Tax=Alphaproteobac... 463 e-128 UniRef50_Q31PW1 Ribonuclease, Rne/Rng family n=19 Tax=Cyanobacte... 462 e-128 UniRef50_Q3J4J9 RNAse E n=6 Tax=Rhodobacteraceae RepID=Q3J4J9_RHOS4 460 e-128 UniRef50_Q0G6Z6 Ribonuclease E and G n=2 Tax=Rhizobiales RepID=Q... 460 e-127 UniRef50_C2KPN3 Ribonuclease G n=3 Tax=Actinomycetaceae RepID=C2... 460 e-127 UniRef50_C0ZAL2 Putative ribonuclease G n=1 Tax=Brevibacillus br... 459 e-127 UniRef50_B3QZC2 Ribonuclease, Rne/Rng family n=12 Tax=Chlorobiac... 457 e-126 UniRef50_Q1K0W4 Ribonuclease, Rne/Rng family n=1 Tax=Desulfuromo... 457 e-126 UniRef50_D0JBK5 Ribonuclease G n=2 Tax=Blattabacterium RepID=D0J... 457 e-126 UniRef50_Q2GKZ9 Ribonuclease, Rne/Rng family n=10 Tax=Anaplasmat... 457 e-126 UniRef50_UPI00003842F2 COG1530: Ribonucleases G and E n=1 Tax=Ma... 456 e-126 UniRef50_B2V9I2 Ribonuclease, Rne/Rng family n=4 Tax=Hydrogenoth... 456 e-126 UniRef50_A9BIJ0 RNA binding S1 domain protein n=1 Tax=Petrotoga ... 455 e-126 UniRef50_C5EUP6 Ribonuclease G n=1 Tax=Clostridiales bacterium 1... 455 e-126 UniRef50_Q2G5W8 Ribonuclease E n=8 Tax=cellular organisms RepID=... 455 e-126 UniRef50_A4AGL0 Ribonuclease G n=3 Tax=Actinobacteria (class) Re... 454 e-126 UniRef50_Q97JL8 Ribonucleases G/E family protein n=1 Tax=Clostri... 453 e-125 UniRef50_C6QC83 Ribonuclease, Rne/Rng family n=1 Tax=Hyphomicrob... 453 e-125 UniRef50_C5VAX0 Ribonuclease E n=5 Tax=Corynebacterium RepID=C5V... 453 e-125 UniRef50_A6CTK6 Cytosolic axial filament protein n=1 Tax=Bacillu... 452 e-125 UniRef50_C0VZF1 Ribonuclease E n=1 Tax=Actinomyces coleocanis DS... 451 e-125 UniRef50_A8IFL2 Ribonuclease E and G n=6 Tax=Rhizobiales RepID=A... 451 e-125 UniRef50_B5ZYQ5 Ribonuclease, Rne/Rng family n=7 Tax=Alphaproteo... 451 e-125 UniRef50_B9JVK9 Ribonuclease E n=40 Tax=Rhizobiales RepID=B9JVK9... 450 e-124 UniRef50_B4RCR6 Ribonuclease, Rne/Rng family protein n=4 Tax=Alp... 449 e-124 UniRef50_A8RTZ4 Putative uncharacterized protein n=1 Tax=Clostri... 449 e-124 UniRef50_D2LHL1 Ribonuclease, Rne/Rng family n=1 Tax=Rhodomicrob... 449 e-124 UniRef50_B0UJB2 Ribonuclease, Rne/Rng family n=4 Tax=Methylobact... 449 e-124 UniRef50_B6INB6 Ribonuclease, Rne n=1 Tax=Rhodospirillum centenu... 448 e-124 UniRef50_C9XNN6 Ribonuclease g n=8 Tax=Clostridium RepID=C9XNN6_... 448 e-124 UniRef50_A7HQG8 Ribonuclease, Rne/Rng family n=1 Tax=Parvibaculu... 447 e-123 UniRef50_D2SCS1 Ribonuclease, Rne/Rng family n=39 Tax=Bacteria R... 447 e-123 UniRef50_B8HA23 Ribonuclease, Rne/Rng family n=1 Tax=Arthrobacte... 447 e-123 UniRef50_B5ZDP7 Ribonuclease, Rne/Rng family n=12 Tax=Alphaprote... 447 e-123 UniRef50_A6LQR5 Ribonuclease, Rne/Rng family n=8 Tax=Clostridium... 446 e-123 UniRef50_A3EQR7 Ribonucleases G and E n=3 Tax=Leptospirillum Rep... 445 e-123 UniRef50_A0JXK2 Ribonuclease, Rne/Rng family n=4 Tax=Actinomycet... 445 e-123 UniRef50_B2GGD5 Putative ribonuclease n=1 Tax=Kocuria rhizophila... 445 e-123 UniRef50_Q0C4E1 Ribonuclease, Rne/Rng family n=2 Tax=Hyphomonada... 444 e-123 UniRef50_UPI0001BC2E10 putative ribonuclease n=1 Tax=Brevibacter... 444 e-122 UniRef50_P72656 Ribonuclease E homolog n=10 Tax=Cyanobacteria Re... 443 e-122 UniRef50_Q8DL99 Ribonuclease E n=3 Tax=Chroococcales RepID=Q8DL9... 443 e-122 UniRef50_A8UTH4 Cytoplasmic axial filament protein n=1 Tax=Hydro... 443 e-122 UniRef50_A8GXM7 Ribonuclease E n=15 Tax=cellular organisms RepID... 442 e-122 UniRef50_D1Y9V9 S1 RNA binding domain protein n=3 Tax=Propioniba... 442 e-122 UniRef50_C0XRI1 Ribonuclease E (Fragment) n=2 Tax=Corynebacteriu... 442 e-122 UniRef50_Q0FAK9 Ribonuclease, Rne/Rng family protein n=1 Tax=Rho... 442 e-122 UniRef50_C4RPB5 Ribonuclease Rne/Rng n=1 Tax=Micromonospora sp. ... 440 e-121 UniRef50_A9KMH0 Ribonuclease, Rne/Rng family n=1 Tax=Clostridium... 439 e-121 UniRef50_P51211 Ribonuclease E homolog n=2 Tax=Porphyra RepID=RN... 438 e-121 UniRef50_C7NH23 RNAse G n=1 Tax=Kytococcus sedentarius DSM 20547... 438 e-121 UniRef50_C8XF15 Ribonuclease, Rne/Rng family n=1 Tax=Nakamurella... 437 e-120 UniRef50_Q0SR50 Ribonuclease, Rne/Rng family n=8 Tax=Clostridium... 437 e-120 UniRef50_B8EPB2 Ribonuclease, Rne/Rng family n=1 Tax=Methylocell... 436 e-120 UniRef50_B2HMG4 Ribonuclease E Rne n=28 Tax=Mycobacterium RepID=... 436 e-120 UniRef50_Q3AF57 Ribonuclease, Rne/Rng family n=1 Tax=Carboxydoth... 435 e-120 UniRef50_D2RC82 S1 RNA binding domain protein n=8 Tax=Bifidobact... 434 e-119 UniRef50_B1LBB5 Ribonuclease, Rne/Rng family n=6 Tax=Thermotogac... 433 e-119 UniRef50_C5RGP2 Ribonuclease, Rne/Rng family n=1 Tax=Clostridium... 433 e-119 UniRef50_A5CEM7 Ribonuclease E n=2 Tax=Orientia tsutsugamushi Re... 432 e-119 UniRef50_D2PUT1 Ribonuclease, Rne/Rng family n=1 Tax=Kribbella f... 431 e-119 UniRef50_A9VIS0 Ribonuclease, Rne/Rng family n=78 Tax=Bacillus R... 430 e-118 UniRef50_A8L1W0 Ribonuclease, Rne/Rng family n=25 Tax=Actinobact... 430 e-118 UniRef50_C0D9K4 Putative uncharacterized protein n=2 Tax=Clostri... 429 e-118 UniRef50_C3WHH5 Ribonuclease G n=4 Tax=Fusobacterium RepID=C3WHH... 429 e-118 UniRef50_A0R152 Ribonuclease, Rne/Rng family protein n=9 Tax=Cor... 428 e-118 UniRef50_A5ZQK1 Putative uncharacterized protein n=2 Tax=Clostri... 428 e-118 UniRef50_C4LJU7 Ribonuclease E n=1 Tax=Corynebacterium kroppenst... 428 e-118 UniRef50_Q2JW46 Ribonuclease, Rne/Rng family n=4 Tax=Synechococc... 428 e-118 UniRef50_Q2S597 Ribonuclease, Rne/Rng family subfamily n=1 Tax=S... 427 e-118 UniRef50_A3VT88 Ribonuclease E n=1 Tax=Parvularcula bermudensis ... 426 e-117 UniRef50_C7Q8B4 Ribonuclease, Rne/Rng family n=1 Tax=Catenulispo... 426 e-117 UniRef50_A5WCI8 RNAse G n=4 Tax=Moraxellaceae RepID=A5WCI8_PSYWF 423 e-116 UniRef50_C2BMV7 Ribonuclease E n=3 Tax=Corynebacterium RepID=C2B... 422 e-116 UniRef50_D0LAJ7 Ribonuclease, Rne/Rng family n=1 Tax=Gordonia br... 422 e-116 UniRef50_A2BYM7 S1 RNA binding domain:Ribonuclease E and G n=8 T... 422 e-116 UniRef50_Q6B930 Ribonuclease E n=1 Tax=Gracilaria tenuistipitata... 421 e-116 UniRef50_C7MPQ3 Ribonuclease, Rne/Rng family n=2 Tax=Actinomycet... 420 e-115 UniRef50_Q8GZQ4 Endoribonuclease n=8 Tax=core eudicotyledons Rep... 419 e-115 UniRef50_Q1V2D3 Ribonuclease E/G n=5 Tax=Bacteria RepID=Q1V2D3_P... 419 e-115 UniRef50_C6J9J6 Putative uncharacterized protein n=1 Tax=Ruminoc... 417 e-114 UniRef50_B1VGM2 Ribonuclease E n=1 Tax=Corynebacterium urealytic... 416 e-114 UniRef50_Q9M498 Endoribonuclease E (Fragment) n=6 Tax=Magnolioph... 415 e-114 UniRef50_A0Q1T9 Ribonuclease G n=4 Tax=Clostridium RepID=A0Q1T9_... 414 e-114 UniRef50_C0ERY0 Putative uncharacterized protein n=1 Tax=Eubacte... 414 e-114 UniRef50_B8IYX2 Ribonuclease, Rne/Rng family n=10 Tax=Desulfovib... 413 e-113 UniRef50_C5CAZ2 Ribonuclease, Rne/Rng family n=1 Tax=Micrococcus... 412 e-113 UniRef50_D1SD19 Ribonuclease, Rne/Rng family n=1 Tax=Micromonosp... 409 e-112 UniRef50_D0WNB8 Putative S1 RNA binding domain protein n=1 Tax=A... 408 e-112 UniRef50_Q3A2X7 Ribonuclease E n=3 Tax=Bacteria RepID=Q3A2X7_PELCD 407 e-111 UniRef50_C7QYR2 Ribonuclease, Rne/Rng family n=1 Tax=Jonesia den... 405 e-111 UniRef50_B8DVT8 Ribonuclease G n=7 Tax=Bifidobacterium RepID=B8D... 405 e-111 UniRef50_A8LRP5 Ribonuclease n=35 Tax=Rhodobacterales RepID=A8LR... 404 e-111 UniRef50_A8M0Z2 Ribonuclease, Rne/Rng family n=2 Tax=Salinispora... 403 e-110 UniRef50_C3PI06 Ribonuclease E n=3 Tax=Corynebacterium RepID=C3P... 403 e-110 UniRef50_C8NQN5 Ribonuclease E n=5 Tax=Corynebacterium RepID=C8N... 402 e-110 UniRef50_D1BDM1 Ribonuclease, Rne/Rng family n=1 Tax=Sanguibacte... 401 e-110 UniRef50_C1F7B7 Ribonuclease, Rne/Rng family, insertion n=2 Tax=... 401 e-110 UniRef50_Q1D0P4 Ribonuclease, Rne/Rng family n=7 Tax=Proteobacte... 401 e-109 UniRef50_B7ANV1 Putative uncharacterized protein n=1 Tax=Bactero... 400 e-109 UniRef50_Q6AIU3 Probable RNAse E n=1 Tax=Desulfotalea psychrophi... 399 e-109 UniRef50_UPI0001973AFC ribonuclease n=1 Tax=Clostridium sp. M62/... 398 e-109 UniRef50_Q2B6H0 Cytosolic axial filament protein n=1 Tax=Bacillu... 397 e-108 UniRef50_A0L8J1 Ribonuclease E n=1 Tax=Magnetococcus sp. MC-1 Re... 397 e-108 UniRef50_A7VBE5 Putative uncharacterized protein n=3 Tax=cellula... 396 e-108 UniRef50_D1BV45 Ribonuclease, Rne/Rng family n=2 Tax=Actinomycet... 395 e-108 UniRef50_UPI0001BC3959 ribonuclease G n=1 Tax=Butyrivibrio cross... 395 e-108 UniRef50_A4F9K3 Ribonuclease, Rne/Rng family n=1 Tax=Saccharopol... 395 e-108 UniRef50_A7HJB9 Ribonuclease, Rne/Rng family n=1 Tax=Fervidobact... 395 e-108 UniRef50_C9L8D6 Ribonucleases G and E n=1 Tax=Blautia hansenii D... 395 e-108 UniRef50_Q7U4C5 Ribonuclease E n=16 Tax=cellular organisms RepID... 393 e-107 UniRef50_O67311 Cytoplasmic axial filament protein n=1 Tax=Aquif... 393 e-107 UniRef50_A6WDN2 Ribonuclease, Rne/Rng family n=1 Tax=Kineococcus... 390 e-106 UniRef50_A9RK39 Predicted protein n=1 Tax=Physcomitrella patens ... 388 e-106 UniRef50_C6LLP4 Cytoplasmic axial filament protein n=1 Tax=Bryan... 388 e-106 UniRef50_A7H8A5 Ribonuclease, Rne/Rng family n=1 Tax=Anaeromyxob... 386 e-105 UniRef50_A6MVU3 Ribonuclease E n=1 Tax=Rhodomonas salina RepID=A... 383 e-104 UniRef50_A8VZD2 Alanine racemase n=1 Tax=Bacillus selenitireduce... 381 e-104 UniRef50_C4Z0A7 Ribonuclease G n=1 Tax=Eubacterium eligens ATCC ... 378 e-103 UniRef50_D1AAW2 Ribonuclease, Rne/Rng family n=1 Tax=Thermomonos... 377 e-102 UniRef50_Q4JWU2 Ribonuclease E n=2 Tax=Corynebacterium jeikeium ... 376 e-102 UniRef50_C7G7S7 Ribonuclease, Rne/Rng family n=2 Tax=Roseburia R... 376 e-102 UniRef50_C4Z9Z5 Ribonuclease G and E n=1 Tax=Eubacterium rectale... 375 e-102 UniRef50_B4U851 RNA binding S1 domain protein n=1 Tax=Hydrogenob... 371 e-101 UniRef50_C4FYU8 Putative uncharacterized protein n=1 Tax=Abiotro... 369 e-100 UniRef50_A9ESZ7 Ribonuclease G n=1 Tax=Sorangium cellulosum 'So ... 369 e-100 UniRef50_A7B8M6 Putative uncharacterized protein n=4 Tax=Clostri... 368 e-100 UniRef50_Q01YX3 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus ... 368 e-100 UniRef50_Q1IRN1 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus ... 364 1e-98 UniRef50_B6INE9 Ribonuclease, Rne n=1 Tax=Rhodospirillum centenu... 363 2e-98 Sequences not found previously or not previously below threshold: >UniRef50_P21513 Ribonuclease E n=119 Tax=Gammaproteobacteria RepID=RNE_ECOLI Length = 1061 Score = 782 bits (2018), Expect = 0.0, Method: Composition-based stats. Identities = 1061/1061 (100%), Positives = 1061/1061 (100%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY Sbjct: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI Sbjct: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA Sbjct: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT Sbjct: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE Sbjct: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS Sbjct: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME Sbjct: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA Sbjct: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA Sbjct: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA Sbjct: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 Query: 661 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR 720 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR Sbjct: 661 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR 720 Query: 721 KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ 780 KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ Sbjct: 721 KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ 780 Query: 781 QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG 840 QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG Sbjct: 781 QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG 840 Query: 841 KVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPV 900 KVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPV Sbjct: 841 KVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPV 900 Query: 901 QVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEV 960 QVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEV Sbjct: 901 QVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEV 960 Query: 961 VETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVP 1020 VETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVP Sbjct: 961 VETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVP 1020 Query: 1021 EAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE 1061 EAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE Sbjct: 1021 EAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE 1061 >UniRef50_Q492Q0 Ribonuclease E n=1 Tax=Candidatus Blochmannia pennsylvanicus str. BPEN RepID=Q492Q0_BLOPB Length = 866 Score = 685 bits (1766), Expect = 0.0, Method: Composition-based stats. Identities = 399/542 (73%), Positives = 458/542 (84%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQQEELRVALVDGQRLYDLDIE+ GHEQKK+NIYKGKI RIEPSLEA FVDY Sbjct: 1 MKRMLINATQQEELRVALVDGQRLYDLDIETVGHEQKKSNIYKGKIIRIEPSLEAVFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ERHGFLP+KEI+ EYF ++ S++ + NIK++L EGQE+IVQIDKEERGNKGAALTTFI Sbjct: 61 GVERHGFLPIKEISHEYFLSSPSSYNKFNIKEILCEGQELIVQIDKEERGNKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAGSYLVLMPNNP++ GISRRIEG+DR LKE L++LELPEGM LI+RTAG+GKS EAL Sbjct: 121 SLAGSYLVLMPNNPKSSGISRRIEGNDRIGLKEILSTLELPEGMSLIIRTAGLGKSIEAL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 +WDL+ RL+HW+ IK A APFLIHQ+SNVIVRAFRDYLR DIGEILIDNPK++ LA Sbjct: 181 EWDLTSRLQHWKTIKNTAAKHLAPFLIHQDSNVIVRAFRDYLRPDIGEILIDNPKIMHLA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++HI +LGRPDF+ KIK Y G+IPLFSHYQIESQIESAFQREVRLPSGGSIVID+TEALT Sbjct: 241 KEHITSLGRPDFTKKIKFYNGDIPLFSHYQIESQIESAFQREVRLPSGGSIVIDTTEALT 300 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AIDINSAR+T+G DIE+TAF+TNLEA DEIARQLRLRD+GGLIVIDFIDMTP+RHQR +E Sbjct: 301 AIDINSARSTKGTDIEDTAFHTNLEATDEIARQLRLRDVGGLIVIDFIDMTPIRHQREIE 360 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N L+ AV QDRARIQI HIS+FGLLE+SRQRLS SLGESSHH+CPRCSGTG++RDNESLS Sbjct: 361 NSLKIAVHQDRARIQIGHISKFGLLELSRQRLSTSLGESSHHICPRCSGTGSIRDNESLS 420 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSILRLIEEEALK+NT EVHAIVPV IASYLLNEKR A++ IE RQ GVR +IVP +QM+ Sbjct: 421 LSILRLIEEEALKDNTYEVHAIVPVAIASYLLNEKRKAISDIEQRQKGVRAIIVPYEQMK 480 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TP+Y + R+RKGE SY+L + + S E + L + A Sbjct: 481 TPNYEIRRIRKGETYNKPSYLLATNQDYEITQSSGEMISSNYTYTTEKLQSTARTSSNLV 540 Query: 541 PT 542 P Sbjct: 541 PD 542 >UniRef50_Q8K9J9 Ribonuclease E n=5 Tax=Buchnera aphidicola RepID=RNE_BUCAP Length = 968 Score = 676 bits (1744), Expect = 0.0, Method: Composition-based stats. Identities = 412/645 (63%), Positives = 490/645 (75%), Gaps = 1/645 (0%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQQEELRVALVDGQRLYDLDIES EQKK+NIYKGKITRIEPSLEA F+DY Sbjct: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESSRSEQKKSNIYKGKITRIEPSLEAVFIDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G E+HGFLPLKEI++ YFP NY+ R NIKD+LREGQE+IVQI+KEERG KGAALTTFI Sbjct: 61 GMEKHGFLPLKEISKNYFPENYNCDVRLNIKDILREGQELIVQINKEERGTKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LAGSYLVLMPNNP+ GISRR+EG DR ELKE L+SL++PE MGLI+RTAGVGKS ++L Sbjct: 121 TLAGSYLVLMPNNPKIAGISRRVEGSDRIELKELLSSLKIPEKMGLIIRTAGVGKSIKSL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDLS RLKHW AIKKA++ + APFLI+QESNVIVRAFRDYLRQDIGEILIDNPK+L++A Sbjct: 181 QWDLSLRLKHWNAIKKASKKKSAPFLIYQESNVIVRAFRDYLRQDIGEILIDNPKILDIA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 R+HI ALGRPDF +KIKLYTGEIPLFS+YQIESQI+SAFQR+VRLPSGGSI++D+TEALT Sbjct: 241 REHITALGRPDFINKIKLYTGEIPLFSYYQIESQIDSAFQRKVRLPSGGSIMVDTTEALT 300 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AIDINS+R+TRG DIE TAFNTNLEA +EI+RQLRLRDLGGLIVIDFIDMT + HQ+ +E Sbjct: 301 AIDINSSRSTRGADIETTAFNTNLEAVEEISRQLRLRDLGGLIVIDFIDMTTISHQKIIE 360 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N+LRE VR+DRARIQI HIS+FGLLEMSRQRLS SLGESSHH+CPRC+GTGT+RDNESLS Sbjct: 361 NKLREIVREDRARIQIGHISKFGLLEMSRQRLSSSLGESSHHICPRCTGTGTIRDNESLS 420 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSILRLIEEEALKENT EVHAIVP+ IA YLLNEKR AV AIE RQ G + +IVPN M+ Sbjct: 421 LSILRLIEEEALKENTYEVHAIVPIEIACYLLNEKREAVYAIEKRQAGGKTIIVPNKNMK 480 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPHY V R+RKGE+ ++SY L + + + ++E ++K L ++ D Sbjct: 481 TPHYLVSRIRKGEQIRSMSYCLSNVRKNKIFNNIKKEIVDKKHKLNSTLTNISLSDDSFD 540 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 E + + L +F +K F E Sbjct: 541 KQKEEKEKFLRKKNYNNSIINALF-NNKNLFFKFIVWIKNSFLKKHIFVKNESFKRNIFQ 599 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQ 645 + +K N+ + +++ + S + N+ + Sbjct: 600 NKKNILFAKKEEFNSIEEIHKKDNQVSSIDNNKKKQLLNKVKKNN 644 >UniRef50_C4X6M8 RNase E n=25 Tax=Gammaproteobacteria RepID=C4X6M8_KLEPN Length = 1077 Score = 655 bits (1690), Expect = 0.0, Method: Composition-based stats. Identities = 787/1097 (71%), Positives = 845/1097 (77%), Gaps = 56/1097 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY Sbjct: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEIAREYFPANY+AHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI Sbjct: 61 GAERHGFLPLKEIAREYFPANYNAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELP+GMGLIVRTAGVGKSAEAL Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPDGMGLIVRTAGVGKSAEAL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDLSFRLKHWEAI+KAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA Sbjct: 181 QWDLSFRLKHWEAIQKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT Sbjct: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE Sbjct: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS Sbjct: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSILRLIEEEALKENT+EVHAIVPVPIASYLLNEKR+AV+AIE+RQ VR +IVPND+M+ Sbjct: 421 LSILRLIEEEALKENTKEVHAIVPVPIASYLLNEKRAAVSAIESRQGDVRVIIVPNDEMQ 480 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPHY VLRVRKGEET TLSY+LPKLHEE MALP ++E AERKRPEQPALA F MPD PPA Sbjct: 481 TPHYSVLRVRKGEETSTLSYLLPKLHEEEMALPGDDEPAERKRPEQPALAAFVMPDAPPA 540 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTE-QPAPKAE 599 P P AP AAP AAPAQPGLLSRFF ALK +FSG EE KP E Q KAE Sbjct: 541 PML---EEPAAAPVAAAAPVAAAAPAQPGLLSRFFSALKNIFSGAEEAKPAEVQVEKKAE 597 Query: 600 AKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQ------------ 647 KPERQQ+RRKPR NNRRDRN+RRD R R + + R Sbjct: 598 EKPERQQERRKPRANNRRDRNDRRDNRDNRDNRDNRDNRDTRADNAEGREPRESREENRR 657 Query: 648 ------QQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEE 701 Q E R+ RQ + + + ++Q PRRER+RRR+DDKRQAQQEAKA EE Sbjct: 658 NRREKPSQNVEARDVRQTSGDDAEKAKSRDEQQPRRERTRRRSDDKRQAQQEAKAQTREE 717 Query: 702 QSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAP 761 VQETEQEERV+ + PRRK RQL QKVR E +V E + E +V E AP Sbjct: 718 PVVQETEQEERVQTL-PRRKPRQLAQKVRVESAVVEPV-------AEIVPEAVVAEVIAP 769 Query: 762 RTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYP 821 +E VK LP ++ +Q E N ++R+ GMPRRSRRSPRHLRVSGQRRRRYRDERYP Sbjct: 770 HSEPVKAELPAGVESVADQDE--NGESREANGMPRRSRRSPRHLRVSGQRRRRYRDERYP 827 Query: 822 TQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIE 881 TQSPMPLTVACASPE+ASGKVWIRYP+VRPQD Q EE + Q+ + + A +E Sbjct: 828 TQSPMPLTVACASPEMASGKVWIRYPVVRPQDQQPEEVQVQDASVAKTVEAVAAPVAVVE 887 Query: 882 PVVSAPVVEEVAGVVEAPVQVAEPQPEVVETT-------------HPEVIAAAVTEQPQV 928 V +APV E A + + +P VTE P V Sbjct: 888 TVTAAPVTVEPATMEPVTAEPVVVEPVAAAEPLVVDAAEVVAPAAVEPAPQEPVTEAPAV 947 Query: 929 ITESDVAV----AQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAE 984 +A A+ V + E V A +E + AE V P A PA PV AE Sbjct: 948 EAPQAIAPVTLDAEPVVVEPEAVETTPVVAAPVETIAPVAETVEQAPVTEAAPAEPVKAE 1007 Query: 985 VAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGH 1044 +P V H HATAPMTRAPAP+YVPEAPRHS W RP FAFEGKGAAGGH Sbjct: 1008 P-------PVSKPVVVAGHRHATAPMTRAPAPDYVPEAPRHSTWVRPPFAFEGKGAAGGH 1060 Query: 1045 TATHHASAAPARPQPVE 1061 +ATH A+A P RPQPVE Sbjct: 1061 SATHKATAEPTRPQPVE 1077 >UniRef50_B0BR35 Ribonuclease E n=14 Tax=Pasteurellaceae RepID=B0BR35_ACTPJ Length = 995 Score = 632 bits (1629), Expect = e-179, Method: Composition-based stats. Identities = 534/1068 (50%), Positives = 659/1068 (61%), Gaps = 95/1068 (8%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ+EELRVALVDGQRL+DLDIESPGHEQKK+NIYKGKITR+EPSLEAAFVDY Sbjct: 1 MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKSNIYKGKITRVEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEI+REYFPA+Y +GRPNIKD+++EGQEVIVQ+ KEERGNKGAALTTFI Sbjct: 61 GAERHGFLPLKEISREYFPADYVFNGRPNIKDIIKEGQEVIVQVSKEERGNKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAGSYLVLMPNNPRAGGISRRIEGD+R ELKEAL L++PE +GLIVRTAGVGKS E L Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDERLELKEALDCLDVPEDVGLIVRTAGVGKSPEEL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDL L HWEAIKKAAESRPAPFLIHQES+VIVRA RDYLR+DIGEILIDN K+ E A Sbjct: 181 QWDLKVLLHHWEAIKKAAESRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDNKKIFEKA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + HI L RPDF ++++LY GE+PLFSHYQIESQIESAFQREVRLPSGGSIVID TEALT Sbjct: 241 KNHIR-LVRPDFINRVRLYEGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALT 299 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AIDINS+R+TRGGDIEETA NTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR VE Sbjct: 300 AIDINSSRSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVE 359 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NR+REA RQDRARIQ S ISRFGLLEMSRQRLSPSL E+S HVCPRC GTG VRDNES++ Sbjct: 360 NRIREATRQDRARIQFSRISRFGLLEMSRQRLSPSLSEASSHVCPRCQGTGKVRDNESIA 419 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSILRL+EEEA+KENT +VH IVPV IASYLLNEKR A+++IE R D V+ V+VP + ME Sbjct: 420 LSILRLLEEEAIKENTAQVHTIVPVQIASYLLNEKRKAISSIEKRHD-VQVVVVPTESME 478 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPH+ V R+R+ E PTLSY L K + + + V Sbjct: 479 TPHFSVYRLRENEVLPTLSYDLAKHYHDREED-----TQLNTHTVSEEVLVTRNEPVITV 533 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 + + + + PAP TP PA+P LLSR +K+ F+ E K E+P PKA Sbjct: 534 ESVLQSSELNLQPAP-----TPVEPAKPSLLSRLIAKVKSFFAP--EEKAEEKPKPKARN 586 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 + +R+ R +P + +R++R + + + E R+E + R +A++ + E Sbjct: 587 QHDRRNRRERPNRVDRQERKQTQ----AQDEQKAQRQERNQERNEAKKARRQVVEEVAGV 642 Query: 661 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR 720 + T+ + +++ A R RR K + + ++ E S Q Sbjct: 643 QETQTEQRSNKDNATTERRQRRDLRKKVRVENVEASVATTEPSTQP-------------- 688 Query: 721 KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ 780 E+ V A + P+V + E + +E R Sbjct: 689 ----------IEEKVQNIAQIQPLVAQETQPETVNEERQDVREN---------------- 722 Query: 781 QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG 840 R RR PRHLRV QRRR + + + MPL A ASPE+ASG Sbjct: 723 ---------------GRQRRLPRHLRVGNQRRRDNNNRKENVVAAMPLAAAVASPEMASG 767 Query: 841 KVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPV 900 K+W+++ + + E+ + E EP+V + + A V V Sbjct: 768 KIWVKFSEPVSTNKPNSKAEEKARFLSVDEMLEQQTTEVNEPIVESNIENNSASSVAPVV 827 Query: 901 QVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVA----VAQEVAEQAEPVVEPQEETAD 956 + Q + +++ + ES+ A V + +A+ P+ + +D Sbjct: 828 GFIKQQSD------RDLVKENKARLHHQVEESEQADEQLVEKAMAKHVAPLGGFVSQHSD 881 Query: 957 IEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHN----------HA 1006 + V E E V Q AP + AE +V + N H Sbjct: 882 RDLVKEKNERVQKFQAQATQ--APAIGNATAEAISVPVSNYQSDYSFNGRLGTFSRVMHT 939 Query: 1007 TAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAP 1054 A MT A APE E ++W + + F GKG G +A H +AP Sbjct: 940 KAEMTVASAPEKALETVTVNEWTQSKYYFYGKGFGGHSSAVSHVHSAP 987 >UniRef50_P44443 Ribonuclease E n=98 Tax=Gammaproteobacteria RepID=RNE_HAEIN Length = 935 Score = 618 bits (1594), Expect = e-175, Method: Composition-based stats. Identities = 532/1063 (50%), Positives = 637/1063 (59%), Gaps = 135/1063 (12%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ+EELRVALVDGQRL+DLDIESPGHEQKKANIYKGKITR+EPSLEAAFVDY Sbjct: 1 MKRMLINATQKEELRVALVDGQRLFDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEIAREYFP +Y GRPNI+D+L EGQEVIVQ++KEERGNKGAALTTF+ Sbjct: 61 GAERHGFLPLKEIAREYFPDDYVFQGRPNIRDILVEGQEVIVQVNKEERGNKGAALTTFV 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAGSYLVLMPNNPRAGGISRRIEGD+RTELKEAL+SL++P+G+GLIVRTAGVGKS E L Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDERTELKEALSSLDVPDGVGLIVRTAGVGKSPEEL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDL L HWEAIK+A++SRPAPFLIHQES+VIVRA RDYLR+DIGEILID+PK+ E A Sbjct: 181 QWDLKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSPKIFEKA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++HI L RPDF +++KLY GE+PLFSHYQIESQIESAFQREVRLPSGGSIVID TEALT Sbjct: 241 KEHIK-LVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALT 299 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AIDINSAR+TRGGDIEETA NTNLEAADEIARQLRLRDLGGL+VIDFIDMTP+RHQR VE Sbjct: 300 AIDINSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPIRHQREVE 359 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NR+R+AVR DRARIQIS ISRFGLLEMSRQRLSPSLGESSHH+CPRC GTG VRDNESLS Sbjct: 360 NRIRDAVRPDRARIQISRISRFGLLEMSRQRLSPSLGESSHHICPRCQGTGKVRDNESLS 419 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSILRL+EEEALKENT++VH IVPV IASYLLNEKR A++ IE R + V ++ PN+ ME Sbjct: 420 LSILRLLEEEALKENTKQVHTIVPVQIASYLLNEKRKAISNIEKRHN-VDIIVAPNEAME 478 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPH+ V R+R GEE LSY L K+H E + V Sbjct: 479 TPHFSVFRLRDGEEVNELSYNLAKIHCAQDENTEESLLSRNVETTAVIEQPAVESAVVAL 538 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 PV + +P LL++ +K LF+ E Sbjct: 539 SISEAAPTPVERKS-----------NEPSLLAKIIAKIKGLFATKSEENK---------- 577 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 + NR +R + Q + Sbjct: 578 -----------------------------------PKNNRTSRNPNRNQRRSQDRRSSRR 602 Query: 661 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR 720 +E T ++ R R R + +R +E+ A + + +EER PV RR Sbjct: 603 PRSENNETERTEEQVRNVRERNQRRPRRNLVEESIAESAVNSTPVFEAKEERTEPVTQRR 662 Query: 721 KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ 780 ++R L ++VR E + E+ + I + Sbjct: 663 QRRDLRKRVRVEDNETVVENNFSTTEKMPEVDVITVQNN--------------------- 701 Query: 781 QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG 840 +E R RR+PRHLR + +RRR E +SPMPL A SPELASG Sbjct: 702 -DEKPVHQNQRSERQERQRRTPRHLRAANNQRRRRDQE---PKSPMPLFAAVVSPELASG 757 Query: 841 KVWIRYPIV----RPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVV 896 K WI Y V + V+E EQE+ I P + V E+ V Sbjct: 758 KAWIDYSTVNLPKENHFLSVDELLEQEKTK----------KGFITPAMGIVVEEKSPDVK 807 Query: 897 EAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETAD 956 A + +P E V+ E + + +PQ + ES Sbjct: 808 PALDFITQPANESVQKKVQESLDRLSSYKPQEVVESIDPA-------------------- 847 Query: 957 IEEVVETAEVVVAEPEVVAQPAAPV-VAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPA 1015 + V EPE + + + V E + T+++V H A MT A A Sbjct: 848 ---------INVDEPETLEKVSKFVRTYEFNGRLGTISSVP--------HTKAEMTLAKA 890 Query: 1016 PEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQ 1058 + +PE WQ + F GKGAAG H A H + P R + Sbjct: 891 NDEMPEDFPIRAWQDSRYYFYGKGAAGHHCAISHVYSEPTRTK 933 >UniRef50_C9R616 Ribonuclease E (RNase E) n=2 Tax=Gammaproteobacteria RepID=C9R616_AGGAD Length = 960 Score = 606 bits (1563), Expect = e-171, Method: Composition-based stats. Identities = 527/1062 (49%), Positives = 615/1062 (57%), Gaps = 106/1062 (9%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 MLINATQ+EELRVALVDGQRL+DLDIES GHEQKKANIYKGKITR+EPSLEAAFVDYGAE Sbjct: 1 MLINATQKEELRVALVDGQRLFDLDIESLGHEQKKANIYKGKITRVEPSLEAAFVDYGAE 60 Query: 64 RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLA 123 RHGFLPLKEIAREYFP+ Y GRPNI+D++ EGQEVIVQ++KEERGNKGAALTTF+SLA Sbjct: 61 RHGFLPLKEIAREYFPSGYVYQGRPNIRDIISEGQEVIVQVNKEERGNKGAALTTFVSLA 120 Query: 124 GSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWD 183 GSYLV+MPNNPRAGGISRRIEGD+R ELK+AL+SL++PEG+GLIVRTAGVGKS E LQWD Sbjct: 121 GSYLVIMPNNPRAGGISRRIEGDERLELKDALSSLDVPEGVGLIVRTAGVGKSPEELQWD 180 Query: 184 LSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQH 243 L L HWEAIK+A++SRPAPFLIHQES+VIVRA RDYLR+DIGEILID+ +V E A+ H Sbjct: 181 LKVLLHHWEAIKQASQSRPAPFLIHQESDVIVRAIRDYLRRDIGEILIDSLQVYEKAKAH 240 Query: 244 IAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAID 303 I L RPDF +++KLY GE+PLFSHYQIESQIESAFQREVRLPSGGSIVID TEALTAID Sbjct: 241 IK-LVRPDFINRVKLYQGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDVTEALTAID 299 Query: 304 INSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL 363 INSAR+TRGGDIEETA NTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR VENR+ Sbjct: 300 INSARSTRGGDIEETALNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQREVENRV 359 Query: 364 REAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSI 423 R+AVRQDRARIQIS ISRFGLLEMSRQRLSPSLGESSHHVCPRC GTG +RDNESLSLSI Sbjct: 360 RDAVRQDRARIQISRISRFGLLEMSRQRLSPSLGESSHHVCPRCQGTGKIRDNESLSLSI 419 Query: 424 LRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPH 483 LRL+EEEALKENT++VH IVPV IASYLLNEKR A+++IE R V ++VPN+ METPH Sbjct: 420 LRLLEEEALKENTKQVHTIVPVQIASYLLNEKRKAIHSIEKRHT-VDILVVPNEAMETPH 478 Query: 484 YHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTP 543 + V RVR GEE LSY L +LH+ + + D PA TP Sbjct: 479 FSVFRVRDGEEVNELSYNLARLHQ-----------GQDEIFVAEESLISRNIDTTPAETP 527 Query: 544 AEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPE 603 +A V P AP Q G E K EQ Sbjct: 528 VVESAAVSLSIPMPAPEPVERKEQSGPSLLSRLLAALKGLFASEPKQEEQNKKTRNNNRN 587 Query: 604 RQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVT 663 +R + Q R R R D E + R R Q+ R + + Sbjct: 588 SNNNRNRRNQERRNSRRNRNDNAENVVEEQTAEKAERVESRNRNQERNAKRNRKPEVIEE 647 Query: 664 EKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQR 723 A + R +R +R Sbjct: 648 VINSEASTPVSEERVEPTQRRQ------------------------------------RR 671 Query: 724 QLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEE 783 L +KVR + E + + Q A E VV Sbjct: 672 DLRKKVRLNEEEMNEV--------PPSKSTVAQFAENTVVEPKAEEEIVVTDVIDLDDNA 723 Query: 784 NNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVW 843 RDN R RR PRHLRV+ QRRRR E +SPMPL A ASPELASGKVW Sbjct: 724 EADKGRDNS----RQRRLPRHLRVNNQRRRRNTQE----KSPMPLFAAVASPELASGKVW 775 Query: 844 IRYPIV----RPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAP 899 I + V+E EQ+ + P + V + V Sbjct: 776 IDMGQSVQSKENSFLSVDELLEQQNQSDAGEPEQSITVTM--PALDMIVEKSKNDVQPLT 833 Query: 900 VQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEE 959 + +P + V+ + V P E TA++ Sbjct: 834 EFIIQPANDSVKKKVQASLQRLNNNV---------------------VSAPMEATAEVIV 872 Query: 960 VVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYV 1019 ++ ++ V E + T +AV H A T A + Sbjct: 873 TMDVSDNVKFMDETDR------TYVFNGRLGTFSAV--------THTKAEATLAKPSDTP 918 Query: 1020 PEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE 1061 +WQ + F GKGAAG HTA H P + + V+ Sbjct: 919 ITTYPVQEWQESRYYFYGKGAAGHHTAISHIYTEPTKAEAVK 960 >UniRef50_C8PW15 Ribonuclease E n=1 Tax=Enhydrobacter aerosaccus SK60 RepID=C8PW15_9GAMM Length = 1266 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 365/1070 (34%), Positives = 520/1070 (48%), Gaps = 60/1070 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKR+LINAT EE+RVAL +G LYD D+E+ EQKKANIYKG +TR+EPSLEA FV+Y Sbjct: 1 MKRILINATHAEEIRVALCNGNHLYDFDLENRTREQKKANIYKGHVTRVEPSLEAVFVEY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G++R GFLP++EIA EY NIK +++EG E+IVQ++KEERGNKGAAL+T I Sbjct: 61 GSQRQGFLPIREIAPEYLA--GDPRSTTNIKQLIKEGDELIVQVEKEERGNKGAALSTLI 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNN R GGISR+I G R E+K+AL+ L LP+GM +I+RTAG+GK+ + L Sbjct: 119 SLAGRYLVLMPNNARGGGISRQISGKLRDEMKQALSELRLPKGMSVIIRTAGIGKTTDEL 178 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q DL L W+ I++ ++ P+P L+HQE+ V+ RA RDYLR DI EI +DN A Sbjct: 179 QQDLDHLLNIWKGIQQQSQKFPSPRLLHQEAGVVTRAVRDYLRDDITEIWVDNEYAYNEA 238 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 I A+ P ++K++ YT P+F+ + IE QIE+A+QREVRLPSGGSIVID TEAL Sbjct: 239 ANFIEAV-MPQQANKLRKYTDYEPMFARFGIEKQIETAYQREVRLPSGGSIVIDQTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINS++AT+G D+ ETAFNTNLEAADEIARQLRLRD+GGLIVIDFIDM HQ+ VE Sbjct: 298 SIDINSSKATKGADVSETAFNTNLEAADEIARQLRLRDMGGLIVIDFIDMATDDHQKQVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NRL+EA + DRARIQ + ISRFGLLEMSRQRL PSL E++ ++CPRC GTG +RD SL+ Sbjct: 358 NRLKEATKNDRARIQFAEISRFGLLEMSRQRLRPSLEEATGYLCPRCHGTGMIRDLRSLA 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSI+R IE+ AL+E EV A VP IA++LLNEKR + +E G R I+P+ +E Sbjct: 418 LSIMRQIEQRALQERHGEVQAEVPTDIAAFLLNEKRETLVCLEQE-SGTRITILPHAHLE 476 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEE-------------AMALPSEEEFAERKRPEQP 527 +P +++ G + + +E S Sbjct: 477 SPEFNITYNSDGFAPSSYERVAESQQQEYKDRGYDTSNWHTDDNEVSRVAPTGNHNAWSN 536 Query: 528 ALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEE 587 A P P+ A KAA P P + L LF+ ++ Sbjct: 537 ASNAANTTPSPATPSNKPQQTANNTTAAKAAVPQPVQPTATVPATSAVAWLSNLFAPTQQ 596 Query: 588 TKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQ 647 + T + + A + + + + S N E N Q Sbjct: 597 AQVTPHFSGQDAASAIESLVNTGAQSLGVQGQINHAALTASIPAVSANTSETSANPYQEA 656 Query: 648 QQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQET 707 Q + + R + +A + R + + + Q+ + + +T Sbjct: 657 SQQPSATAESSDKDAERRKRGNRKPKAKKPNRYQSETSEAEVSSQDTDSNKDKSNDASKT 716 Query: 708 EQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVK 767 + + +P ++ K R +++ VA V + T Sbjct: 717 AKTSELPKREPNSRRDSRGVKERRATLANDDSNVAAVNDVT------------------- 757 Query: 768 VPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMP 827 TA + + +R P ++V Q + + + Sbjct: 758 -----ATDTAVAPVDGRKNNQSKAEKPKGAKQRDPNSVQV--QVFKTEQQQPIAAVETTH 810 Query: 828 LTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAA---AIEPVV 884 L++ + E+A +V P+ E+ E + V+ VA A P Sbjct: 811 LSLDASKGEIAEPEVQPIASATMPEPTTPEQAIETPVIPSSITVSNDEVAELSTASTPSK 870 Query: 885 SAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQA 944 + V A+ P V + + + +T+ V+Q + + Sbjct: 871 PSAEPATAQLAVTPSQGRAKNDPREVYKAYQAQFSPVASVVSTSVTKISGTVSQFINQYL 930 Query: 945 EPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHN 1004 + E + + ++ + + VVAE + N Sbjct: 931 DNAAEKMATNSVVSCFIQAIDAFNHQAATTPAKDNVVVAEQ----------QRFGQYFRN 980 Query: 1005 HATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAP 1054 + A ++ +Y S +QR GK A T T A P Sbjct: 981 YGYASLSAQNLEDYHTAILPASQFQR----QAGKTDAALPTVTKRAINDP 1026 Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 37/390 (9%), Positives = 81/390 (20%), Gaps = 5/390 (1%) Query: 672 QQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRY 731 + + + + + + + ++ V Sbjct: 490 APSSYERVAESQQQEYKDRGYDTSNWHTDDNEVSRVAPTGNHNAWSNASNAANTTPSPAT 549 Query: 732 EQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDN 791 + ++ + +P+ A P T V + A T Q + + Sbjct: 550 PSNKPQQTANNTTAAKAAVPQPVQPTATVPATSAVAWLSNLFAPTQQAQVTPHFSGQDAA 609 Query: 792 GGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRP 851 + + L V GQ P S + + AS + Sbjct: 610 SAIESLVNTGAQSLGVQGQINHAALTASIPAVSANTSETSANPYQEASQQPSATAESSDK 669 Query: 852 QDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVE 911 + + + + A + + ++ + P+ E Sbjct: 670 DAERRKRGNRKPKAKKPNRYQSETSEAEVSSQDTDSNKDKSNDASKTAKTSELPKREPNS 729 Query: 912 TTHPEVIAAAVT-----EQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEV 966 + + A VA + Sbjct: 730 RRDSRGVKERRATLANDDSNVAAVNDVTATDTAVAPVDGRKNNQSKAEKPKGAKQRDPNS 789 Query: 967 VVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHS 1026 V + Q E + E A+A M PE E P Sbjct: 790 VQVQVFKTEQQQPIAAVETTHLSLDASKGEIAEPEVQPIASATMPEPTTPEQAIETPVIP 849 Query: 1027 DWQRPTFAFEGKGAAGGHTATHHASAAPAR 1056 + + + + A A A+ Sbjct: 850 SSITVSNDEVAELSTASTPSKPSAEPATAQ 879 >UniRef50_Q7MM07 Ribonuclease E n=15 Tax=Gammaproteobacteria RepID=Q7MM07_VIBVY Length = 1036 Score = 592 bits (1525), Expect = e-167, Method: Composition-based stats. Identities = 547/1068 (51%), Positives = 668/1068 (62%), Gaps = 40/1068 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ+EELRVALVDGQRLYDLDIESPGHE KKANIYKG+ITR+EPSLEAAFVDY Sbjct: 1 MKRMLINATQKEELRVALVDGQRLYDLDIESPGHESKKANIYKGRITRVEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEIA+EYFP YS GRP+IK+VL EGQEVIVQI+KEERG+KGAALTTFI Sbjct: 61 GAERHGFLPLKEIAKEYFPDGYSYQGRPSIKEVLTEGQEVIVQIEKEERGSKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAGSYLVLMPNNPRAGGISRRIEGD+RTELK AL++LELP+GMGLIVRTAGVGKSAE L Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDERTELKSALSTLELPQGMGLIVRTAGVGKSAEEL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 +WDL+ LKHW AIK A+ES PAPFLIHQESNVIVRA RDYLR+DIGEILID+ + E A Sbjct: 181 EWDLNVLLKHWAAIKDASESNPAPFLIHQESNVIVRAIRDYLRRDIGEILIDSNTIYERA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++HI L RPDF +++K Y GE+PLFSHYQIESQIESAFQREVRLPSGGSIVID TEALT Sbjct: 241 KEHIQ-LVRPDFVNRVKKYDGEVPLFSHYQIESQIESAFQREVRLPSGGSIVIDPTEALT 299 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSARAT+GGDIEETA NTNLEAADEIARQLRLRDLGGL+VIDFIDMTPVRHQR VE Sbjct: 300 SIDINSARATKGGDIEETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMTPVRHQREVE 359 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NRLREAVR DRAR+QI ISRFGLLEMSRQRLSPSL E+SHH+CPRCSGTG VRDNESL+ Sbjct: 360 NRLREAVRLDRARVQIGRISRFGLLEMSRQRLSPSLAEASHHICPRCSGTGVVRDNESLA 419 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LS+LRLIEEEALK+NT +V A+VPVPIASYLLNEKR +VN R V+ +VPN ME Sbjct: 420 LSVLRLIEEEALKDNTAQVLAVVPVPIASYLLNEKRRSVNH-IERIQEVKITVVPNSDME 478 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPH+ V+RVR+GEE LSY+LPK E +E +P++ P Sbjct: 479 TPHFEVIRVREGEEVDLLSYLLPKKLEAMKEAEGKESPETEYKPKKIEEPVLKGFASPAQ 538 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 PA VVA P +PGL R AL + G E+ + Sbjct: 539 SVPAPAPKAVVAKVANEKPQA---EEKPGLFGRLIKALGSFLFGS-----AEEKVEAEKT 590 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 + + ++++ RQ R+ R + + R D + R+ R + + ++ Sbjct: 591 ERKDEREKGNRRQKRDRNDRRRNNRDNNRENNRDRDGKRRQRNRDENVVETQDEAIKPRS 650 Query: 661 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR 720 + K + A + E ++ Q A+A +Q Q+T + V+ RR Sbjct: 651 QQKRKQKPAQNKADNAVESKANAKVAEKGLQLAAEAQGASKQEGQKTPS--KAEKVKERR 708 Query: 721 KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ 780 ++R+LN+ VR + + + V AE ++ + KV V Sbjct: 709 QRRKLNKPVRVKDQLEQAEETLMDAAPVVEAETFNKQNTPASEKAEKVVADTV------- 761 Query: 781 QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG 840 + DN +N PRR+RRSPRHLR SGQRRRR RD R ASPE+A G Sbjct: 762 ---DAMDNSENEEKPRRNRRSPRHLRASGQRRRRGRDRRPNPFRLR--KGGVASPEMAMG 816 Query: 841 KVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSA-------PVVEEVA 893 KV RY P+ V +E+ +EEV P ++ + Sbjct: 817 KVMPRYI---PKPVAKKEEMVKEEVVTAVTAVPAMQGGVACPEMAMGKVIIRRDITSAQT 873 Query: 894 GVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEE 953 P + + + EV+ T + V+ Q++ Q E V +P E+ Sbjct: 874 PTETKPKRSKSRNNKPAKAAVVEVVTEEPTVENAVVAPIQETEVQKIEPQVESVSQPVEQ 933 Query: 954 TADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRA 1013 + E E +V EVVA+ + TVA VE + V A+APMT+A Sbjct: 934 VSV--ETTEVVAEIVETTEVVAEVESATETVANETEATVAVVESSIKVIKAQASAPMTKA 991 Query: 1014 PAPEYVPEAPRHSD-WQRPTFAFEGKGAAGGHTATHHASAAPARPQPV 1060 P P+ + E + ++ +A G AG AT ASAA +P+ V Sbjct: 992 PGPQELIEIQVVAAPFKAERYAQRG---AGSQVATSQASAAMTKPEMV 1036 >UniRef50_A8PMW2 Ribonuclease E (RNase E) n=1 Tax=Rickettsiella grylli RepID=A8PMW2_9COXI Length = 778 Score = 590 bits (1521), Expect = e-167, Method: Composition-based stats. Identities = 319/760 (41%), Positives = 437/760 (57%), Gaps = 37/760 (4%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 R+LINA Q E+RVAL++ +L DLD+E G EQKK+NIYKGKI+RIE SLEAAF+ YG Sbjct: 6 NRILINANQPGEIRVALLEANKLSDLDMEYTGQEQKKSNIYKGKISRIEQSLEAAFISYG 65 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFIS 121 AERHGFLP KEIA Y + +IK L+ GQE++VQI+KEERG+KGAALTT+I+ Sbjct: 66 AERHGFLPFKEIAPSYLK--GKNYDLQSIKHSLKVGQELMVQIEKEERGDKGAALTTYIT 123 Query: 122 LAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASL----ELPEGMGLIVRTAGVGKSA 177 L GSYLVLMPNNP AGGISRRIEGD+R E+++ + L EL + MGLI+RTAGVG+ Sbjct: 124 LPGSYLVLMPNNPGAGGISRRIEGDERREMQDLMHDLIEQTELSKNMGLILRTAGVGREF 183 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 L+ DL+ ++ W AI+KA RPAPFLI QE ++I R+ RDYLR+DI EI++D+ K+ Sbjct: 184 SELKNDLNLLIQQWNAIQKAYHERPAPFLIFQEGDLITRSVRDYLRRDIDEIIVDDKKIH 243 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 E +Q+I + RPDF S+I LY IPLF ++ IE +ESAF+R++ LPSG +IVID TE Sbjct: 244 EKIKQYIEQI-RPDFVSRISLYQNHIPLFMYFDIEEAVESAFKRKIELPSGATIVIDRTE 302 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 AL +IDINS R+T+ DIEETA TNLEAA EIA QLR+RDLGGLIVIDFIDM +QR Sbjct: 303 ALVSIDINSGRSTKNEDIEETAVATNLEAAKEIAHQLRVRDLGGLIVIDFIDMNSEENQR 362 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 VEN R AV++DRARIQI IS FGLLEMSRQRL SLG+++ +C RC+G GTVR E Sbjct: 363 KVENCFRLAVKKDRARIQIGRISTFGLLEMSRQRLRHSLGKANETLCSRCNGQGTVRTIE 422 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 S +L +LR IE+E LK++TQ + +PV IA+YL NEKR A+ IE + + V +++PN Sbjct: 423 SFALFLLRSIEKETLKKSTQHIRVELPVDIATYLFNEKRLALQHIEHQYN-VNLLLIPNP 481 Query: 478 QMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 ++P Y + K T ++ +++ P+ +P V Sbjct: 482 YWQSPQYKITSFSKTNNLKTNDAASYQMLDKS-------HLESSLLHHSPSAKVVEIPAV 534 Query: 538 PPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPK 597 P T + + + FG +K + + +K Sbjct: 535 KP------------LTFINNKNKTVGLLGRLLGMLKDFGKIKTDLNKKQPSKNKITTPYS 582 Query: 598 AEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESR 657 EA R ++N RRD + + S E++ + R Sbjct: 583 HEAHKYTSGRRYSKTRHNHNRVRHRRDEKEKLNNDSGGNEQHASSHSFKSSHHRYNRYPT 642 Query: 658 QQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQ 717 Q+ E + ++ +R +Q+ K + + +R+ Sbjct: 643 QRYESPSAVKPTPAITTEKKSSIHKRKQPLSTKKQDNK--------INHQQSPQRLEKSI 694 Query: 718 PRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQE 757 + Q V +++ P EE +++PI Q Sbjct: 695 VSSPDLNSRKTAASSQHVVKKST--PAFEEKGSSDPIAQA 732 >UniRef50_B3T2A0 Putative S1 RNA-binding domain protein n=2 Tax=prokaryotic environmental samples RepID=B3T2A0_9ZZZZ Length = 776 Score = 576 bits (1483), Expect = e-162, Method: Composition-based stats. Identities = 292/738 (39%), Positives = 438/738 (59%), Gaps = 10/738 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ+EELRVA+VDGQ+LYDLDIE EQKK NIYK KI+RIEPSL+A FVD+ Sbjct: 22 MKRMLINATQEEELRVAMVDGQKLYDLDIEIKSREQKKNNIYKAKISRIEPSLDAIFVDF 81 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G+ R+GFLP +E++REY+ + + +IK +L EGQ+++VQ+ KEERG KGAALTTFI Sbjct: 82 GSARNGFLPFREVSREYYLSEPIPGEKLDIKKLLEEGQDIVVQVSKEERGTKGAALTTFI 141 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG ++VLMPN +AGG+SR+I G DR ++ ++L++L +P+ GLI+RTAG+G+S L Sbjct: 142 SLAGRFIVLMPNKAKAGGVSRKIMGQDREQILDSLSNLGVPKEAGLIIRTAGLGRSDIEL 201 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 +WDL L W +IKK A + AP LI +E N+IVRA RD+L +I EI++D+ + A Sbjct: 202 EWDLKHLLGIWNSIKKMAVNVEAPALIFKEDNLIVRAMRDHLNDEISEIIVDDENTFKDA 261 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++++ + P+ K+ Y PLF+ +QIE QIESA+ +V LPSGGS+VID TEAL Sbjct: 262 KKYLKQVT-PNNLKKLLYYKETTPLFTKFQIEHQIESAYSNKVILPSGGSVVIDYTEALV 320 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINS ++T+ IE TA TNLEA DEI RQ RLRDLGGL+VIDFIDM R+Q+ VE Sbjct: 321 SIDINSGKSTKQSGIESTALKTNLEAVDEITRQCRLRDLGGLLVIDFIDMRQHRNQKQVE 380 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N L+ AV+ DRA+I + HIS+FGLLEMSRQRL PSLG+S++ +C CSG G +R ESL+ Sbjct: 381 NALKNAVKSDRAKISLGHISKFGLLEMSRQRLRPSLGDSAYRICENCSGMGRIRSTESLA 440 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 L++LRL+EEEA KENT V A +P A+YLLNEKR + IE R + V +++ + ++ Sbjct: 441 LAVLRLVEEEARKENTASVIADIPSDAATYLLNEKRQWIKDIEQR-ESVHIILIADPELS 499 Query: 481 TPHYHVLRVRKGEETPTLSYM-----LPKLHEEAMALPSEEEFAERKRPEQPALATFAMP 535 + ++ + R+RK E + ++ +L + ++ R P T Sbjct: 500 SVNFSIKRLRKDEANLAEYKQASYKLAKTIKQDNASLNPISQAMDKSRNLNPKPVTAWDI 559 Query: 536 DVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPA 595 D P + + +P +R G + K T + Sbjct: 560 DDVQTPNLIDRFMFWLENKQNNKVKANQGKNKPRSKTR---KSTTGVGGNKRKKSTNKRT 616 Query: 596 PKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRE 655 +++ ++K + + ++ + E + RE ++ ++ + RE Sbjct: 617 TPKRRSVKQESPQKKTAKKGPKQGAAKQGPKREAAKQGPKREAAKQGPKREAAKQGPKRE 676 Query: 656 SRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRP 715 + +Q + + +++A ++ + + K + + + ++ + Sbjct: 677 AAKQGPKRDAVKKGPKREAAKQGPKQDAAKKGPKQDAVKKGPKKKSEKTRSSKGKSPNTT 736 Query: 716 VQPRRKQRQLNQKVRYEQ 733 + + ++ + E Sbjct: 737 QRIKDQESKEKSMAVNES 754 >UniRef50_C8N8A8 Ribonuclease G and E n=19 Tax=Proteobacteria RepID=C8N8A8_9GAMM Length = 1302 Score = 575 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 367/820 (44%), Positives = 474/820 (57%), Gaps = 28/820 (3%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 MLINATQQEELRVALVDGQ+LYDLDIE+ QKKANIYKGKITRIEPSLEAAFVDYGA+ Sbjct: 1 MLINATQQEELRVALVDGQQLYDLDIETLYSAQKKANIYKGKITRIEPSLEAAFVDYGAQ 60 Query: 64 RHGFLPLKEIAREYFPANYSAH-GRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISL 122 RHGFLP KEI +EY + +AH G+ KD++ GQEV+VQIDKEERGNKGAALTT+ISL Sbjct: 61 RHGFLPFKEIGKEYLTGSTTAHEGQLAFKDMIEVGQEVLVQIDKEERGNKGAALTTYISL 120 Query: 123 AGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQW 182 AG +LVLMPNNPRAGG+SRRI+GDDR EL+E L L++PE MG+IVRTAGVG++ E LQW Sbjct: 121 AGRFLVLMPNNPRAGGVSRRIQGDDRKELRETLDMLDVPENMGIIVRTAGVGRAQEELQW 180 Query: 183 DLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQ 242 DL F L+ WEAI + LI+QESN+IVRA RDYLR DIG+ILID+ +V + A Sbjct: 181 DLDFLLQLWEAISEEYRKAQPQRLIYQESNIIVRALRDYLRPDIGQILIDDERVYQQASD 240 Query: 243 HIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAI 302 + L P+ +K+KLY IPLF+ YQIE QIESA+QR V+LPSGG +VID TEAL +I Sbjct: 241 FMT-LVMPNNLNKLKLYQDNIPLFTRYQIEGQIESAYQRNVQLPSGGELVIDYTEALVSI 299 Query: 303 DINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENR 362 DINS++AT+GGDIEETA+ TNLEAADEIARQ+RLRDLGGLIVIDFIDM+ R+++ VENR Sbjct: 300 DINSSKATKGGDIEETAYQTNLEAADEIARQMRLRDLGGLIVIDFIDMSVSRNRKDVENR 359 Query: 363 LREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLS 422 L EA + DRAR+QI ISRFGLLE+SRQRL PS+ ESSH VCPRC G G++R +S++LS Sbjct: 360 LYEATKIDRARVQIGRISRFGLLELSRQRLRPSMDESSHRVCPRCKGQGSIRGIQSMALS 419 Query: 423 ILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETP 482 +LRLIEEEA+KE T+ + +PV IA+YLLNEKR+ + IE R + V V+VPN + TP Sbjct: 420 LLRLIEEEAMKERTRRITGELPVSIATYLLNEKRAVIRQIEQR-NKVEVVLVPNADLHTP 478 Query: 483 HYHVLRVRKG----EETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVP 538 Y++ R+R + PT SY L HE + E + P Sbjct: 479 DYYIERLRDDELDEDTAPTPSYRLRTRHESHEESDVVAKPGEAVTEQAAVQGVVPRAPAP 538 Query: 539 PAPTPAEPA-------------APVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGG 585 + + PA + + Sbjct: 539 QVAPTVQKSGLAALFSKVVALFKENRDPASAVEETAKTTAGDKRRERTAPARNRRERNER 598 Query: 586 EETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEG---SDNREENRRN 642 +E + +A+A+ ++ + N +N+R++ + R E D E Sbjct: 599 QEPVQPPRKTAEAKAESVQEPRQAPRNNENGNGKNQRQEEAARRYEEALQQDIVREEAPA 658 Query: 643 RRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQ 702 +++ + + + T +A ++ R + R D + + Sbjct: 659 ATPRREKASRSALPKDDVNPTLEALLNPPEEINGRSVRKGRPRDVHAVR----GQGKADY 714 Query: 703 SVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPR 762 QE + +L A AP + P EAP Sbjct: 715 VPQERPLAPAEDELTAPGLVEELRDDAPEAAETAPAPKKAPSFAKIKPLPPSDAEAPGL- 773 Query: 763 TELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSP 802 L+ P A + D MP +P Sbjct: 774 VSLLDQPADAAPAPALLPTGKLREDAHYPLEMPATQAINP 813 >UniRef50_Q89AH3 Putative truncated ribonuclease E n=22 Tax=Bacteria RepID=RNE_BUCBP Length = 410 Score = 569 bits (1466), Expect = e-160, Method: Composition-based stats. Identities = 253/401 (63%), Positives = 327/401 (81%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M+RMLINA + ++LR+AL+DGQ+LYDL++E+ +Q+K+NIYKGKI RIEPSLEAAFVDY Sbjct: 1 MRRMLINAIEIKKLRIALIDGQQLYDLNVENIDKKQRKSNIYKGKIVRIEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +++GFLPLKEI+R YFP N S + +IK++L+EGQE IVQIDKEERG KGA LTTFI Sbjct: 61 GEKKNGFLPLKEISRNYFPNNCSNYRHLHIKNILKEGQECIVQIDKEERGTKGALLTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG+YLVLMPN P GISR+IEG DR LK+ ++ L +PE MG+I+RT+GVG+S E L Sbjct: 121 SLAGNYLVLMPNCPHLEGISRKIEGIDRFHLKKIISMLMVPENMGIIIRTSGVGRSIETL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q DL+FR+K+W IKK+AE AP LIH+ESN+++R RDYL++DI EI++DNP++LELA Sbjct: 181 QLDLNFRVKNWYTIKKSAEINTAPCLIHKESNIVIRTLRDYLKKDIQEIIVDNPEILELA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 R ++ + F KIKLYTG PLFS+Y+IESQI + +R V+LPSGGSI+ID TEALT Sbjct: 241 RDYMFNMNCSYFEKKIKLYTGSDPLFSYYKIESQINALLRRIVKLPSGGSIIIDYTEALT 300 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AIDINS+++T+G +IEETAFNTN EA EIARQLRLRDLGGLIVIDFIDM+ ++HQ+ +E Sbjct: 301 AIDINSSQSTKGVNIEETAFNTNYEAVREIARQLRLRDLGGLIVIDFIDMSVLKHQKMIE 360 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSH 401 L + +++DRAR+Q+ IS+FGLLEMSRQ L L + +H Sbjct: 361 LHLHQVLQKDRARVQVGSISQFGLLEMSRQCLGSPLKKINH 401 >UniRef50_Q1PY04 Strongly similar to ribonuclease E (RNase E) n=1 Tax=Candidatus Kuenenia stuttgartiensis RepID=Q1PY04_9BACT Length = 509 Score = 569 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 199/487 (40%), Positives = 292/487 (59%), Gaps = 9/487 (1%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 RMLINA + EE R+A+++ L +L IE EQ NIYKG++ IEP+LEAAFVD G Sbjct: 10 RMLINAIEPEECRIAILENNILEELYIERSSREQIAGNIYKGRVVNIEPNLEAAFVDIGL 69 Query: 63 ERHGFLPLKEIAREYFPAN------YSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL 116 +++GFL ++ N I+DVL++G+E++VQ+ KE G KG +L Sbjct: 70 KKNGFLHASDVLVPSEGKNQGEEADPPPVRHHRIRDVLQQGKEILVQVTKESLGTKGPSL 129 Query: 117 TTFISLAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGK 175 TT+ISL G YLVLMP R G+S++I E ++R LK+ L SL P+ +G IVRTAGV + Sbjct: 130 TTYISLPGRYLVLMPEVKRY-GVSKKITEEEERQRLKKILESLNPPKNIGFIVRTAGVQQ 188 Query: 176 SAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPK 235 + LQ D + LK W+ I K ++ AP +I+QES++++R RD QDI EI++D+ Sbjct: 189 TKRELQKDFHYLLKLWKNICKKSKEIDAPGVIYQESDLVIRVIRDIFSQDINEIIVDSES 248 Query: 236 VLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDS 295 V + R+ + + P + ++K Y E PLF ++ IE+ IE R++ L GGSIV++ Sbjct: 249 VFKRTREFLR-IIMPKYEKQLKFYNKEKPLFHNFGIENAIEEINSRKIPLLHGGSIVLEQ 307 Query: 296 TEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRH 355 TEAL AID+NS + D EETAF TN+ AA EIARQ+RLRDLGG+IVIDFIDM +H Sbjct: 308 TEALVAIDVNSGKYKGKCDPEETAFRTNMIAAKEIARQIRLRDLGGVIVIDFIDMRNEKH 367 Query: 356 QRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRD 415 +AVE + +++++ RAR ++ +S+FG +E++RQR+ PSL + C C GTG + Sbjct: 368 IQAVEKAIADSLKRHRARTKMLKMSKFGTIEITRQRIRPSLRDVLFEECKFCCGTGYAKT 427 Query: 416 NESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVP 475 ESL L+I+R ++ + + YL N+KR + IE + + Sbjct: 428 VESLCLNIMRDVKFALHLPQVVRIEITSNNDVVDYLQNQKRKQMAEIEDAYNKKIVIFTD 487 Query: 476 NDQMETP 482 Sbjct: 488 TANEYGK 494 >UniRef50_A1HNZ2 Ribonuclease, Rne/Rng family n=1 Tax=Thermosinus carboxydivorans Nor1 RepID=A1HNZ2_9FIRM Length = 473 Score = 569 bits (1465), Expect = e-160, Method: Composition-based stats. Identities = 160/492 (32%), Positives = 252/492 (51%), Gaps = 20/492 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + +I + EE R+ALV+ L + +E NIYKGK+ + P ++AAF+D Sbjct: 1 MGKTIIASIMPEESRMALVEDGELVEYVLERSATGHLVGNIYKGKVKNVLPGMQAAFIDI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +++ +L + L GQ++++QI K+ G+KG TT + Sbjct: 61 GGDKNAYLYVGHADANAGR--------------LTVGQDILIQIVKDASGSKGPRTTTGL 106 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 L G Y VL P + G+SRRIE D + LA P+G+G+IVRTA G S L Sbjct: 107 MLPGRYAVLAPYSDGT-GVSRRIEDDAERKRLRQLADKVKPDGVGMIVRTAAAGCSETEL 165 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 D+ + W A+ A+ PAP L++++ ++ +R RDYL D+ E++IDN Sbjct: 166 ARDVEYLHNLWAALAARAKRSPAPALLYRDVDLAIRIVRDYLDDDVTEVVIDNRDAYGRV 225 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + L P +K+K Y +F HY I + + +REV L GG +VID TEALT Sbjct: 226 CDLLQHLA-PAALAKVKFYQYPEDIFVHYGIAADLNRLLKREVELACGGFLVIDQTEALT 284 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ID+N+ R + +T F N+EAA EIARQLRLRD+GG+I++DFIDM H++AV Sbjct: 285 VIDVNTGRFVGDTSLSDTVFRVNMEAAAEIARQLRLRDIGGIIIVDFIDMAKAEHKQAVL 344 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 L E +R+DR R +I ++ GL+E++R++ L + CP C+G G ++ E+++ Sbjct: 345 AFLAEKMRRDRTRSKILGLTSLGLVEITRKKGRQDLNSLMYSECPCCAGRGRIQSPETVA 404 Query: 421 LSILRLIEEEALKEN-TQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 ++I R + A + + + L R A R+ + + M Sbjct: 405 INIRRHLRWAAAQRKLASRLVIQAHPQVVEILS---RQGELARLERELARKLTLESAPAM 461 Query: 480 ETPHYHVLRVRK 491 Y +L ++ Sbjct: 462 HPECYSILYDKE 473 >UniRef50_B5EL09 Ribonuclease, Rne/Rng family n=2 Tax=Acidithiobacillus ferrooxidans RepID=B5EL09_ACIF5 Length = 782 Score = 568 bits (1462), Expect = e-160, Method: Composition-based stats. Identities = 354/802 (44%), Positives = 456/802 (56%), Gaps = 24/802 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINAT EELRVALVDGQ+L DLDIE EQKK+NIYKG+ITR+EPSLEAAFVDY Sbjct: 1 MKRMLINATHAEELRVALVDGQKLLDLDIERAYREQKKSNIYKGRITRVEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEIAREYF GR I+D++REGQE+IVQ+DKEER +KGAALTTF+ Sbjct: 61 GAERHGFLPLKEIAREYF--QQQEQGRKRIQDLVREGQEIIVQVDKEERSSKGAALTTFV 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPRAGG+SRRIEG+DRT++++ L L++PE MG+I RTAG+G+ EAL Sbjct: 119 SLAGRYLVLMPNNPRAGGVSRRIEGEDRTQIRQHLQLLDIPENMGVIARTAGIGQELEAL 178 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q DL + + W+AI A R APFLI+QE NV+VRA RD+ +DIGE+LID A Sbjct: 179 QRDLEYLKQIWQAIVDTAAPRAAPFLIYQEGNVVVRALRDHFSEDIGEVLIDEEGAYNAA 238 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 Q + ++ P ++K Y ++PLFS YQIE QIESAF REVRL SGG+IVID TEAL Sbjct: 239 VQFMGSM-MPKMVHRLKYYDNDVPLFSRYQIEQQIESAFSREVRLESGGAIVIDHTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 A+D+NS RAT+G DI ETAF TNLEAA+EIARQ+RLRDLGGLIV+DFIDM +HQR VE Sbjct: 298 AVDVNSGRATKGQDIAETAFQTNLEAAEEIARQIRLRDLGGLIVVDFIDMESPKHQREVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N+L+EA++ DRAR+Q+ ISRFGL+EMSRQRL SL E+S CPRC+GTG +R E+ S Sbjct: 358 NKLKEALKLDRARVQLGRISRFGLMEMSRQRLGASLEEASSEPCPRCNGTGQIRGCEATS 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 + +LRL+ EE +K EV VPV +A YLLNEKR + +E + D R +++P +M Sbjct: 418 MHVLRLLYEECMKTGAAEVECQVPVDVAVYLLNEKRRQILELEAKTD-TRILVIPTPEMV 476 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPHY + R R + + A RP + A + PP Sbjct: 477 TPHYQIQRTRVEGGSGRTAPAP--------GGEGNALPARPSRPTNESAALSPLTAPPPP 528 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 P +PKA P + G+L+R AL + + + AE Sbjct: 529 EVLPPLRTPPAPSSPKAKVPAKVVPPEEGILARLVRALVSRYVPV-DAATFLAETSGAEM 587 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 +Q R R R + + + ++ E+ + + Sbjct: 588 SASTEQASEISSDEQENSGEGRSGRRRRRGGRRARARRSTQGGENGAESSSADEEAPEGS 647 Query: 661 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR 720 TE+ + D P +D A +E + + P Sbjct: 648 YTTEEFQDNDLLAGP---------EDDSHALEELVYPGSVPAAADWHQMLVPATTRTPAA 698 Query: 721 KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ 780 N R +S+ E + V+E V A R E P PV + Sbjct: 699 DPTFQNDPAREVESLPAEEPASLTVQEPVKDTTRESLRMAVRQEP--TPEPVQGDLLAVE 756 Query: 781 QEENNADNRDNGGMPRRSRRSP 802 E+ + P Sbjct: 757 TMEHGGAVSVAVPGEAEQQSFP 778 Score = 47.6 bits (111), Expect = 0.002, Method: Composition-based stats. Identities = 40/308 (12%), Positives = 64/308 (20%) Query: 670 DEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKV 729 + +R + + + A A E ++ +V Sbjct: 471 PTPEMVTPHYQIQRTRVEGGSGRTAPAPGGEGNALPARPSRPTNESAALSPLTAPPPPEV 530 Query: 730 RYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNR 789 P LV +PV A T + Sbjct: 531 LPPLRTPPAPSSPKAKVPAKVVPPEEGILARLVRALVSRYVPVDAATFLAETSGAEMSAS 590 Query: 790 DNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIV 849 S RRRR R + A A + Sbjct: 591 TEQASEISSDEQENSGEGRSGRRRRRGGRRARARRSTQGGENGAESSSADEEAPEGSYTT 650 Query: 850 RPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEV 909 +++ H + A V P +P EV Sbjct: 651 EEFQDNDLLAGPEDDSHALEELVYPGSVPAAADWHQMLVPATTRTPAADPTFQNDPAREV 710 Query: 910 VETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVA 969 E + V E + T + +A EPV +E + V Sbjct: 711 ESLPAEEPASLTVQEPVKDTTRESLRMAVRQEPTPEPVQGDLLAVETMEHGGAVSVAVPG 770 Query: 970 EPEVVAQP 977 E E + P Sbjct: 771 EAEQQSFP 778 >UniRef50_C8W5Q7 Ribonuclease, Rne/Rng family n=11 Tax=Bacteria RepID=C8W5Q7_DESAS Length = 564 Score = 568 bits (1462), Expect = e-160, Method: Composition-based stats. Identities = 162/500 (32%), Positives = 266/500 (53%), Gaps = 6/500 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + ++ +EE RVA+++ + ++ IE +++ + NI+KGK+ + P ++AAFVD Sbjct: 1 MLKEIVVNVGEEETRVAVLEDKVTVEIYIERAINQRLEGNIFKGKVENVLPGMQAAFVDI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGR--PNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 G +++ FL +++ P NI DVL++GQ+++VQI KE G KG +TT Sbjct: 61 GLDKNAFLYVEDALPSRNPEENRNSLDLCANIGDVLKQGQDLVVQIVKEPIGTKGPRITT 120 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAE 178 I+L G YLVLMP GISRRI + E + LA+ P MGLIVRT G S E Sbjct: 121 HITLPGRYLVLMPTVDYI-GISRRIADEQERERLKELAARVKPRDMGLIVRTVAEGVSEE 179 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 L D++ K W I + P P L+H++ ++ R RD +D+ ++ID+ E Sbjct: 180 ELAQDVNVLAKLWRKIINRSNHGPVPNLLHRDLELVHRILRDIFTEDVDRLIIDSRYEYE 239 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 + + + P K+ + LF Y IE ++E A +R+V L GG +VID EA Sbjct: 240 RVLELL-DIIDPQLKIKVSV-DERENLFEEYGIEMELEKAVKRKVWLKCGGYLVIDQAEA 297 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 LTAID+N+ + ++E+T TNL+AA EIARQLRLR++GG+I++DFIDM H++ Sbjct: 298 LTAIDVNTGKFVGSTNLEDTVLRTNLDAALEIARQLRLRNIGGIIIVDFIDMLEDEHRQK 357 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 V L + +++D+ + + I++ GL+EM+R+++ PSL E CP C G G V E+ Sbjct: 358 VLEVLEKEIKKDKTKTNLLGITQLGLVEMTRKKVRPSLSEMLQKPCPYCEGRGKVLSEET 417 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 + + I + + + + +A+ L+ S + +E + G I + Sbjct: 418 VGIYFKNEIYQLSRQTPADTILVEANPLVAARLIGSGGSNLRDLENK-TGKNLYIRGSAN 476 Query: 479 METPHYHVLRVRKGEETPTL 498 + + ++ Sbjct: 477 YHIESVKIRPLYNKDDIEAN 496 >UniRef50_Q2YA54 Ribonuclease E n=7 Tax=Betaproteobacteria RepID=Q2YA54_NITMU Length = 977 Score = 566 bits (1457), Expect = e-159, Method: Composition-based stats. Identities = 384/1014 (37%), Positives = 533/1014 (52%), Gaps = 47/1014 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRML NATQ EELRVA+VDGQ+L DLDIES G EQ+K+NIYK ITR+EPSLEAAFV+Y Sbjct: 1 MKRMLFNATQPEELRVAIVDGQKLIDLDIESAGKEQRKSNIYKAVITRLEPSLEAAFVEY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ERHGFLP KEI+R Y + GR ++D L EGQE+IVQ+DK+ERG KGAALTT+I Sbjct: 61 GGERHGFLPFKEISRSYLKESPDP-GRVRVQDALHEGQELIVQVDKDERGTKGAALTTYI 119 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPR GG+SRRIEG+DR EL++ ++ L +P+GM +I RTAG+G++ E L Sbjct: 120 SLAGRYLVLMPNNPRGGGVSRRIEGEDRAELRDVMSHLNIPQGMSIIARTAGIGRTEEEL 179 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDL++ L+ W AI+ A++ + FLI+QES++++RA RDY Q+IGEILID + E A Sbjct: 180 QWDLNYLLQLWRAIEDASKGQSGAFLIYQESSLVIRAIRDYFNQEIGEILIDTESIYEQA 239 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 Q + + P +++KLY ++PLFS +QIE QIE+A+ R+V LPSGG+IVID TEAL Sbjct: 240 CQFMGHV-MPGNVARVKLYRDDVPLFSRFQIEHQIETAYSRQVTLPSGGAIVIDHTEALV 298 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ++D+NSARATRG DIE+TA TNLEAADEIARQLRLRDLGGL+VIDFIDM R+QR VE Sbjct: 299 SVDVNSARATRGSDIEQTALATNLEAADEIARQLRLRDLGGLVVIDFIDMEVSRNQREVE 358 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NRL +A+R DRAR+Q+ ISRFGLLE+SRQRL PSLGESS+ CPRC GTG +R +S + Sbjct: 359 NRLHDALRYDRARVQMGKISRFGLLELSRQRLRPSLGESSYISCPRCHGTGHIRGTDSSA 418 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 L ILR+I+EEA+KENT +HA VPV +A+YLLNEKR+ ++AIE R V V++PN +E Sbjct: 419 LHILRIIQEEAMKENTAVLHAQVPVDVATYLLNEKRAEIHAIEARL-KVSVVLIPNIHLE 477 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TP+Y + R+R + ++ E+ + +P + A + PA Sbjct: 478 TPNYSITRLRHDDVKLGEVQTSYQMVEKPAQDIPLPSSGQEPKPMRQQAAVRGITPAQPA 537 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 P P LL + FG K G + + A Sbjct: 538 --------------PVREQKPQHEPEPLSLLDKIFGWFKQGGVGEKTVRHEPPVAAAHPE 583 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 + + + R+ + ++ R R E + ++ R+ R +A Sbjct: 584 ERGQGRRDRREGRIGENEKAARAVQRPRDARAERGAEISPSGAPDLTREAVPQRQERSEA 643 Query: 661 ----EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPV 716 E + Q+ + + + + A +EA + E + +R R Sbjct: 644 KTQGERAAAKKHPRSQREEKPRTELKPSSELPPATEEAVQPSEEGSRRRRRGGRQRDRSE 703 Query: 717 QPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQT 776 + R R+ Q + + + + A E A P L PL Q Sbjct: 704 RLDRAAREARQAIAKDSPLQQSAEQVAHEENPAADLISGAINGIPPLILASTPL---EQK 760 Query: 777 APEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPE 836 ++ A N + R R P + + E P + M T A A Sbjct: 761 EASKESPAGAKNNTPSELLRTDRTLPVIMP---EAVSEASPEVVPQVAAMESTSAPAVTI 817 Query: 837 LASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVV 896 + I ++ E R + VT P+ A EP+V V + Sbjct: 818 AEKVALANEQQITPESPDRLPEDRREAATAAAVTVTGAPILIASEPLVEVEAARVVPEDI 877 Query: 897 EAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETAD 956 + + ++A T P E + A+E + P + D Sbjct: 878 PSQI----------------PLSALETAMPHTKIEQEEVPAKEGHQAVPPQQPGATPSLD 921 Query: 957 IEEV----VETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHA 1006 + +ET + E A+ A +E + + Sbjct: 922 LGAAGLIMIETLPEKIRPAETEAEGEAMKAQPRRRRTPPPPVIEQQEALVQVET 975 >UniRef50_B4RR31 Rne n=31 Tax=Neisseriaceae RepID=B4RR31_NEIG2 Length = 919 Score = 565 bits (1456), Expect = e-159, Method: Composition-based stats. Identities = 371/961 (38%), Positives = 517/961 (53%), Gaps = 57/961 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRML NATQ EELRVA+VDGQ L DLDIE+ G EQ+K NIYKG ITRIEPSLEA FVDY Sbjct: 1 MKRMLFNATQAEELRVAIVDGQNLLDLDIETLGKEQRKGNIYKGIITRIEPSLEACFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +RHGFLP KE++R YF GR I+DVL+EG EVIVQ++K+ERGNKGAALTTFI Sbjct: 61 GTDRHGFLPFKEVSRSYFLGY--EGGRARIQDVLKEGMEVIVQVEKDERGNKGAALTTFI 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPR GG+SRRIEG++R ELK A+A L++P GM +I RTAG+G+SAE L Sbjct: 119 SLAGRYLVLMPNNPRGGGVSRRIEGEERQELKAAMAQLDIPNGMSIIARTAGIGRSAEEL 178 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 +WDL++ + W+AI++A ++ P+L+ ES++++RA RDY R DIGEIL+DN +V + Sbjct: 179 EWDLNYLKQLWQAIEEAGKAHHDPYLLFMESSLLIRAIRDYFRPDIGEILVDNQEVYDQV 238 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + ++ + P + ++KLY PLFS +QIE QIESAF R V LPSGG+IVID TEAL Sbjct: 239 AEFMSYV-MPGNAGRLKLYEDHTPLFSRFQIEHQIESAFSRSVSLPSGGAIVIDHTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +ID+NSARATRG DIE+TAF TN+EAA+E+ARQ+RLRDLGGL+VIDFIDM +HQR VE Sbjct: 298 SIDVNSARATRGADIEDTAFKTNMEAAEEVARQMRLRDLGGLVVIDFIDMENPKHQRDVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N LR+A+++DRAR+Q+ +SRFGLLE+SRQRL P+LGESSH CPRC+GTG +R ES + Sbjct: 358 NVLRDALKKDRARVQMGKLSRFGLLELSRQRLKPALGESSHAACPRCAGTGVIRGIESTA 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 L +LR+++EEA+K+NT EV A VPV +A++LLNEKR+ + A+E R D V V++PN +E Sbjct: 418 LHVLRMVQEEAMKDNTGEVRAQVPVDVATFLLNEKRAELFAMEERLD-VNVVLIPNIHLE 476 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 PHY + R+R + ++ E ++ E+ + +P A + PA Sbjct: 477 NPHYEINRIRTDDVEEDGEPSYKRVAEPEEDESAKPFGGEKAKAARPEPAVKGVRHTSPA 536 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 PT A + F LK +F G E + + Sbjct: 537 PTAAPEK-------------------KTSWWDSFKAWLKRIFGGSETQAVPAAETSEKRS 577 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 R R R+ N R R + R + + R + + Sbjct: 578 TANRSGSRANNRRRNPRRSKREGSKIEVREAAGKTAGQKARADKAETRNNGNRRRNERGD 637 Query: 661 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR 720 TE+A A+ Q + + + + + + RR Sbjct: 638 RATERANEAEIQSRNVQPAAPVADAAPPETEGQT----------------------GKRR 675 Query: 721 KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ 780 + N++ + A A A E EP E + + + ++ A E+ Sbjct: 676 RNGSRNERGQTAPETAAVAETAVQTAENTPPEPYTAEDKGSKPKSERNRRERDSRDAKER 735 Query: 781 QEENNADNRDNGGMPRRSRRSPRHLR------VSGQRRRRYRDERYPTQSPMPLTVACAS 834 +E NN +R G R + + + + + R T + P+TV+ A Sbjct: 736 RERNNQRDRRQNGKKRNIPSAAKIEQYLNIHDTADKVRSAAAHVFGETDANAPITVSIAD 795 Query: 835 PELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAG 894 P +A+ + + + + + AA + + S A Sbjct: 796 PLIATPVQTASSAVSNGDALIYDAAEKIRRAAADILPEGAAPKAAAQEMPSETATFTAAA 855 Query: 895 VVEAPVQVA------EPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVV 948 E P ++ + A + A AE+ V Sbjct: 856 EQARETAQTGGLVLIETDPAALKAWAAQPEVQAGRGLRRSEQPKPSEAATVPAEEMIQVE 915 Query: 949 E 949 Sbjct: 916 T 916 >UniRef50_A5EVP9 Ribonuclease g n=16 Tax=Gammaproteobacteria RepID=A5EVP9_DICNV Length = 496 Score = 564 bits (1454), Expect = e-159, Method: Composition-based stats. Identities = 160/484 (33%), Positives = 255/484 (52%), Gaps = 8/484 (1%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 ++ E RVAL++ L+D+ IE NIYKGK+ R+ P +EAAF+D G E Sbjct: 17 EILVNHTPYETRVALLEDGLLHDVLIERERRRGIVGNIYKGKVQRVLPGMEAAFIDIGLE 76 Query: 64 RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLA 123 R GFL +K I+ I ++L EG+ ++VQ+ K+ G KGA LTT IS++ Sbjct: 77 RAGFLHMKNISLP----TEMVGKEQKISEILHEGESILVQVLKDPIGTKGARLTTEISIS 132 Query: 124 GSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQW 182 +LV +P G+S +I + R L+E + + G IVRTA A++ Sbjct: 133 SRFLVFLP-KSHDIGVSIKIVSETQRQNLREMMHEFHRGQEGGFIVRTAIETADFWAMRA 191 Query: 183 DLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQ 242 D+ + + W++I A LI+ + + R RDY+ + ++++D+P+ Q Sbjct: 192 DMQYLHRVWDSILTTYRESYASTLIYGDLPLYQRVLRDYISPQVKQVIVDDPEAYRAMAQ 251 Query: 243 HIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAI 302 + + +I LY G+ LF Y +E +IE A +R V L SGG ++ID TEA+T I Sbjct: 252 FAGNFLI-EMADRITLYDGDRTLFDRYGVEEEIERALKRRVDLKSGGYLMIDQTEAMTTI 310 Query: 303 DINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENR 362 D+N+ E+T F TNLEAA IARQLR+R+LGG+I++DFIDMT HQ++V + Sbjct: 311 DVNTGGFVGKSSQEDTIFKTNLEAAKAIARQLRIRNLGGIIMLDFIDMTSTEHQQSVVDA 370 Query: 363 LREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLS 422 L A+ D+++ IS IS G++EM+R+R SL + CPRCSG G V+ E++ Sbjct: 371 LLNALAGDKSKYTISPISPLGIIEMTRKRTRESLKQVMCETCPRCSGRGYVKTTETIVYE 430 Query: 423 ILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETP 482 + R + EA + + + I ++ E+ A + ++ + + + Sbjct: 431 LFRDLMREAREYAPKGMTVIGNPDFIEFIREEESMAFSDLQI-LLKMPIRLQSDGAYSQD 489 Query: 483 HYHV 486 Y + Sbjct: 490 KYDI 493 >UniRef50_A9ADG1 Ribonuclease, Rne/Rng family n=89 Tax=Betaproteobacteria RepID=A9ADG1_BURM1 Length = 1111 Score = 562 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 382/943 (40%), Positives = 506/943 (53%), Gaps = 13/943 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRML NATQQEELRVA+VDGQ+L D+DIE+ G EQ+K NIYKG +TRIEPSLEA FV+Y Sbjct: 58 MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVVTRIEPSLEACFVNY 117 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +RHGFLP KE+AR+YF I+D LREGQE+IVQ++KEERGNKGAALTTFI Sbjct: 118 GEDRHGFLPFKEVARQYFKDGVDMRSA-RIQDALREGQELIVQVEKEERGNKGAALTTFI 176 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPR GG+SRRIEGD+R EL+E +A L++P+GM +I RTAG+G+SAE L Sbjct: 177 SLAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLQIPDGMSMIARTAGIGRSAEEL 236 Query: 181 QWDLSFRLKHWEAIKKAAESRPA--PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 QWDL++ L+ W AI+ A++S P LI+ ES++++RA RDY + DIGEILID ++ + Sbjct: 237 QWDLNYLLQLWRAIEAASQSGNPGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIYD 296 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 AR + + PD SK+K Y ++PLFS +QIE QIE+A+ R V LPSGG+IVID TEA Sbjct: 297 QARAFM-DIVMPDNVSKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEA 355 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 L AID+NSARAT+G DIEETA TNLEAADE+ARQLRLRDLGGLIVIDFIDM + QR Sbjct: 356 LVAIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQRE 415 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 VE RL++A++ DRAR+Q+ ISRFGL+E+SRQRL P+L E SH CPRC+GTG +RD ES Sbjct: 416 VEQRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTES 475 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 +L +LR+I+EEA+KENT +H VPV + ++LLNEKR +N IE+R V V++PN Sbjct: 476 SALQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRF-KVGIVLIPNKH 534 Query: 479 METPHYHVLRVRKGEETPTLSYMLPKLHEEAM-ALPSEEEFAERKRPEQPALATFAMPDV 537 ++TPHY + R+R + K+ EEA L SE +++R +P Sbjct: 535 LDTPHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRAADVKPKQEAAVKGIT 594 Query: 538 PPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPK 597 P P P+ P A PA F G LK LF P Sbjct: 595 PERPAPSP-----APQRPVEPAAAPAPAPVAQPSGGFIGWLKGLFGMSPAPAPAPVAPAP 649 Query: 598 AEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESR 657 A+ + R R + R +R R+ G + + Q + RE + Sbjct: 650 AKEQAARPARERAEKTEQRGERGGDRNRNRRGGNGQQAQGGRDQVAAGRGQPQRQEREGK 709 Query: 658 QQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQ 717 + E E + ++ +R + + E + +E +E R R Q Sbjct: 710 EAREPREGREGREGREGRENREAREGREGREGRAPREAREPRENREPREA-REPRERAEQ 768 Query: 718 PRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTA 777 P + ++ + P T+ + P + LP A Sbjct: 769 PEAVEAARGERQERGERRERGERRKPQHAATLETVNRGESHPEQDADKAAAALPGADVAA 828 Query: 778 PEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEL 837 + + + R RR R R + + + P A P Sbjct: 829 DAEAGARDGEERRRRRRGRRGGRRERDEEGAVVDQAEAGLDGEAAAQPAAHEAPVAEPAH 888 Query: 838 ASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVE 897 A+ + + E EQ V P A + V A V A Sbjct: 889 ANAPATVAAAAAA-GVIVAETVVEQRAESVAVETPSAPAHADSDSVAVAEPVVAAAPAAA 947 Query: 898 APVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEV 940 VA V E P + Q Sbjct: 948 PAPVVAPAADVEAGPVALAVSPTDAFEVPADVEAPVAVDVQPA 990 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 53/610 (8%), Positives = 115/610 (18%), Gaps = 15/610 (2%) Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 L + + + + I + + S + + D R + + Sbjct: 381 LEAADEVARQLRLRDLGGLIVIDFIDMESAKSQREVEQRLKDALKHDRARVQMGKISRFG 440 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 R+R + + + ++ A+ Sbjct: 441 LMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTESSALQVLRIIQEEAMKENTAAIHCQV 500 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 P + + ++ + Sbjct: 501 PVEVTAFLLNEKRQEINKIESRFKVGIVLIPNKHLDTPHYKLERLRHDDARLDDPRASWK 560 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 E + + + + + +G Q + A A Sbjct: 561 MAEEAARELESETGYSKRAADVKPKQEAAVKGITPERPAPSPAPQRPVEPAAAPAPAPVA 620 Query: 661 EVTEK-----------ARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQ 709 + + + + R+ ++ + + Sbjct: 621 QPSGGFIGWLKGLFGMSPAPAPAPVAPAPAKEQAARPARERAEKTEQRGERGGDRNRNRR 680 Query: 710 EERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVP 769 + Q R Q + Q + P +E R Sbjct: 681 GGNGQQAQGGRDQVAAGRGQPQRQEREGKEAREPREGREGREGREGRENREAREGREGRE 740 Query: 770 LPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRH----LRVSGQRRRRYRDERYPTQSP 825 + ++ + R+ + +R R R + + Sbjct: 741 GRAPREAREPRENREPREAREPRERAEQPEAVEAARGERQERGERRERGERRKPQHAATL 800 Query: 826 MPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVS 885 + + PE + K P R+ EE + E Sbjct: 801 ETVNRGESHPEQDADKAAAALPGADVAADAEAGARDGEERRRRRRGRRGGRRERDEEGAV 860 Query: 886 APVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAE 945 E A A P A VI V + + E Sbjct: 861 VDQAEAGLDGEAAAQPAAHEAPVAEPAHANAPATVAAAAAAGVIVAETVVEQRAESVAVE 920 Query: 946 PVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNH 1005 P +D V E A E V+ + Sbjct: 921 TPSAPAHADSDSVAVAEPVVAAAPAAAPAPVVAPAADVEAGPVALAVSPTDAFEVPADVE 980 Query: 1006 ATAPMTRAPA 1015 A + PA Sbjct: 981 APVAVDVQPA 990 Score = 44.5 bits (103), Expect = 0.021, Method: Composition-based stats. Identities = 52/450 (11%), Positives = 94/450 (20%), Gaps = 21/450 (4%) Query: 620 NERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRER 679 R + + + + R+ + +T ++ + E A + P Sbjct: 543 ERLRHDDARLDDPRASWKMAEEAARELESETGYSKRAADVKPKQEAAVKGITPERPAPSP 602 Query: 680 SRRRNDDKRQAQQEAKALNVE----------------EQSVQETEQEERVRPVQPRRKQR 723 + +R + A A + + +P R++ Sbjct: 603 APQRPVEPAAAPAPAPVAQPSGGFIGWLKGLFGMSPAPAPAPVAPAPAKEQAARPARERA 662 Query: 724 QLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQE---APAPRTELVKVPLPVVAQTAPEQ 780 + ++ ++ V P + K + Sbjct: 663 EKTEQRGERGGDRNRNRRGGNGQQAQGGRDQVAAGRGQPQRQEREGKEAREPREGREGRE 722 Query: 781 QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG 840 E + G R R+PR R + R ++ P V A E Sbjct: 723 GREGRENREAREGREGREGRAPREAREPRENREPREAREPRERAEQPEAVEAARGERQER 782 Query: 841 KVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPV 900 R + + AA V+A E Sbjct: 783 GERRERGERRKPQHAATLETVNRGESHPEQDADKAAAALPGADVAADAEAGARDGEERRR 842 Query: 901 QVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEV 960 + + E + + A + + P A Sbjct: 843 RRRGRRGGRRERDEEGAVVDQAEAGLDGEAAAQPAAHEAPVAEPAHANAPATVAAAAAAG 902 Query: 961 VETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVP 1020 V AE VV + P A A + A E P Sbjct: 903 VIVAETVVEQRAESVAVETPSAPAHADSDSVAVAEPVVAAAPAAAPAPVVAPAADVEAGP 962 Query: 1021 EAPRHSDWQRPTFAFEGKGAAGGHTATHHA 1050 A S F A A Sbjct: 963 VALAVS--PTDAFEVPADVEAPVAVDVQPA 990 >UniRef50_B0TYI3 Ribonuclease E n=18 Tax=Francisella RepID=B0TYI3_FRAP2 Length = 890 Score = 559 bits (1441), Expect = e-157, Method: Composition-based stats. Identities = 301/888 (33%), Positives = 480/888 (54%), Gaps = 17/888 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK++LIN+ EE R+A +D +L DLDIE+ EQKKANIYKG I+RIEPSL A FV+Y Sbjct: 1 MKKILINSKSSEETRIATLDNGKLIDLDIENVDREQKKANIYKGYISRIEPSLNAIFVNY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +++GFLP KE++ Y + NI +L EGQE+IVQIDKEERG+KGAALTTFI Sbjct: 61 GEDKNGFLPFKEVSEYYLKDVPNGE---NIAHLLSEGQELIVQIDKEERGDKGAALTTFI 117 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LAGSY+VL+PNNP GGISRR+EG+DR +LK+ L L +P+ M +I RTA V S E L Sbjct: 118 TLAGSYMVLLPNNPDGGGISRRVEGEDREKLKKYLKDLNIPKNMSVIARTACVECSFEEL 177 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 + D ++ W++I KA P L+H+ES++IVR RD+L++D+ EI++D+ + E Sbjct: 178 KHDFDTLVELWDSIFKAYHKIKKPDLLHKESDIIVRTVRDHLKEDVKEIIVDSKECYEDV 237 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++ + L + +K+KLY E+P+F+ + I+ QIE+A++RE+RLPSGGSIVID+TEAL Sbjct: 238 KRQLGLLRQSFDINKVKLYNEELPIFAQFGIDQQIENAYKREIRLPSGGSIVIDTTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AID+NS+RA + D+E TAF TNLEAA+E+ARQLR+RDLGGL+++DFIDM+ +++ VE Sbjct: 298 AIDVNSSRANKAEDVETTAFKTNLEAAEEVARQLRIRDLGGLVIVDFIDMSFYPNRKQVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 +L EA++QD+ARIQ+S IS+ GL+E+SRQRLS S+ ES CPRC G G ++ ++ + Sbjct: 358 EKLMEALQQDKARIQMSRISKLGLVEISRQRLSSSINESVMQKCPRCDGHGFIKTTQATA 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 L+ILR I EA+KE+T E+ VPV IA+Y+LNEKR ++ R V+ +++PN ME Sbjct: 418 LTILRKIRAEAIKEDTNEIRVQVPVDIAAYILNEKRDSIVE-IERISEVKVMLIPNFNME 476 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 +P + + + + E A +K+ L+ D + Sbjct: 477 SPKFQM----QRIWGTSYKSNRTSSDLIEDVYNVEIPKAGKKKVAAVELSKPISEDQSVS 532 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 P + Q FF L +G E E P+ + Sbjct: 533 PKEDNKLENKNIETTVQNNTNKTSEKQEPKKKGFFSKLLDKLTGSNEVIAVENKKPQNKQ 592 Query: 601 ---KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESR 657 K + Q+ ++ ++D N+R D ++ + SDN+ N+ + Q Q ++ + R+ R Sbjct: 593 YNNKDKAQKPQKSQDNRPQKDINQRDDRKANNNDRSDNKNNNKGQKPQVQ-KSQDNRQER 651 Query: 658 QQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQ 717 + ++ + + + S + D K + +++ N+ + +E +++ Sbjct: 652 DNNQRNDRKNNDNRNDRNKNKLSSDKFDKKSNNRGSSRSNNLNLNNAEEVVDITQLKYQN 711 Query: 718 PRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTA 777 ++ +KV + +V+ V E + E K + T Sbjct: 712 QTAEKTDNIKKVISKNPEEFVSVMVKDVLENYNSLKDDGATKVATEEKAKTSKYLKFDTV 771 Query: 778 PEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEL 837 + + R++ ++ + ++ + + + + E Sbjct: 772 LV-----DKEITLLKEAARQAEKAKQAEKIQNTEVEDSNNIHAEIKETIEIVDEVVVKEE 826 Query: 838 ASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVS 885 S K + + V++++ + + + T +P Sbjct: 827 QSKKAKLEKDDKTSEQNSVKKEKPKTTKNNKKEKTVEKANKQNQPEPE 874 >UniRef50_C5AD76 Ribonuclease E n=21 Tax=Proteobacteria RepID=C5AD76_BURGB Length = 1125 Score = 559 bits (1440), Expect = e-157, Method: Composition-based stats. Identities = 389/985 (39%), Positives = 505/985 (51%), Gaps = 7/985 (0%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRML NATQQEELRVA+VDGQ+L D+DIE+ G EQ+K NIYKG ITRIEPSLEA FV+Y Sbjct: 1 MKRMLFNATQQEELRVAIVDGQKLIDIDIETAGREQRKGNIYKGVITRIEPSLEACFVNY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +RHGFLP KE+AR+YF I+D LREGQE+IVQ++KEERGNKGAALTTFI Sbjct: 61 GEDRHGFLPFKEVARQYFRDGVDMRSA-RIQDALREGQELIVQVEKEERGNKGAALTTFI 119 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPR GG+SRRIEGD+R EL+E +A LE+PEGM +I RTAG+G+SAE L Sbjct: 120 SLAGRYLVLMPNNPRGGGVSRRIEGDERQELRETMAQLEIPEGMSMIARTAGIGRSAEEL 179 Query: 181 QWDLSFRLKHWEAIKKAAESRPA--PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 QWDL++ L+ W AI+ A++S A P LI+ ES++++RA RDY + DIGEILID ++ + Sbjct: 180 QWDLNYLLQLWHAIEAASKSGHAGQPMLIYLESSLVIRAIRDYFQPDIGEILIDTTEIHD 239 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 AR + + PD K+K Y ++PLFS +QIE QIE+A+ R V LPSGG+IVID TEA Sbjct: 240 QARAFM-DIVMPDNVGKVKRYHDDVPLFSRFQIEHQIETAYSRTVPLPSGGAIVIDHTEA 298 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 L AID+NSARAT+G DIEETA TNLEAADE+ARQLRLRDLGGLIVIDFIDM + QR Sbjct: 299 LVAIDVNSARATKGADIEETATRTNLEAADEVARQLRLRDLGGLIVIDFIDMESAKSQRE 358 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 VE RL++A++ DRAR+Q+ ISRFGL+E+SRQRL P+L E SH CPRC+GTG +RD ES Sbjct: 359 VEQRLKDALKHDRARVQMGKISRFGLMELSRQRLRPALSEGSHVTCPRCNGTGHIRDTES 418 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 +L +LR+I+EEA+KENT +H VPV + ++LLNEKR +N IE+R V V++PN Sbjct: 419 SALQVLRIIQEEAMKENTAAIHCQVPVEVTAFLLNEKRQEINKIESRF-KVGIVLIPNKH 477 Query: 479 METPHYHVLRVRKGEETPTLSYMLPKLHEEAM-ALPSEEEFAERKRPEQPALATFAMPDV 537 ++TPHY + R+R + K+ EEA L SE +++R +P Sbjct: 478 LDTPHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRTGDVKPKQEAAVKGIT 537 Query: 538 PPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPK 597 P P P P AP AAP A FFG +K+LF G + Sbjct: 538 PDHPAPGAPQREAAPVAPAAAPVAAAPVPVAASGGGFFGWIKSLFGGQPPAPAPAPAPVQ 597 Query: 598 AEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESR 657 R R + +R + R + + Q RE + Sbjct: 598 EVETQARPSRERGEKSERGERGGDRNRNPNRRNGQPAGARDTQAAAGSRVPQARGEREVK 657 Query: 658 QQAEVTEKARTADEQQAPRRERSRRR-NDDKRQAQQEAKALNVEEQSVQETEQEERVRPV 716 + E E A E + R R R + + + + +E + R Sbjct: 658 EGREPRENRGEAREGRGNREPREAREGREAREPREVREPREPRAAREPREAREPREGREP 717 Query: 717 QPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQT 776 + + R E+ E A V E + + Sbjct: 718 RESAVTADGAEAPRQERRERGERGERRKPVPHAATLETVNRGETAPAEATEDAELLAPGA 777 Query: 777 APEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPE 836 E A + + RR RR R R G + + Sbjct: 778 ELAADAEAGARDGEERRRRRRGRRGGRREREEGVAGAAPEGAEAGEGTQQAVEAEAGHAH 837 Query: 837 LASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVV 896 + V V V + V A A ++ A Sbjct: 838 GSEAPVAAAVATVTVATAAVAAEAVVSHAAASTPVEATRTEATQAETAPAALMPAPAAET 897 Query: 897 EAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETAD 956 Q A P VE P A V E A E + Sbjct: 898 APAEQAATPAASSVERVEPAAPAEPVVLATPAPAEPAPATEPAAVAHVETAPQEAAAANV 957 Query: 957 IEEVVETAEVVVAEPEVVAQPAAPV 981 E V+ +P Sbjct: 958 SEPPAVPTAPVIEPAVPTVEPTQAA 982 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 44/451 (9%), Positives = 84/451 (18%), Gaps = 2/451 (0%) Query: 587 ETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQA 646 K + P K E PR + + R+ SE + + Sbjct: 474 PNKHLDTPHYKLERLRHDDARLDDPRASWKMAEEAARELESETGYSKRTGDVKPKQEAAV 533 Query: 647 QQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQE 706 + T + A A + + Sbjct: 534 KGITPDHPAPGAPQREAAPVAPAAAPVAAAPVPVAASGGGFFGWIKSLFGGQPPAPAPAP 593 Query: 707 TEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELV 766 +E +P R++ + +++ + P+ Sbjct: 594 APVQEVETQARPSRERGEKSERGERGGDRNRNPNRRNGQPAGARDTQAAAGSRVPQARGE 653 Query: 767 KVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPM 826 + + NR+ R R + V R R E + P Sbjct: 654 REVKEGREPRENRGEAREGRGNREPRE-AREGREAREPREVREPREPRAAREPREAREPR 712 Query: 827 PLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSA 886 S A G R + + ++ + A Sbjct: 713 EGREPRESAVTADGAEAPRQERRERGERGERRKPVPHAATLETVNRGETAPAEATEDAEL 772 Query: 887 PVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEP 946 +A + + E + + E Sbjct: 773 LAPG-AELAADAEAGARDGEERRRRRRGRRGGRREREEGVAGAAPEGAEAGEGTQQAVEA 831 Query: 947 VVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHA 1006 + V + A E A + E Sbjct: 832 EAGHAHGSEAPVAAAVATVTVATAAVAAEAVVSHAAASTPVEATRTEATQAETAPAALMP 891 Query: 1007 TAPMTRAPAPEYVPEAPRHSDWQRPTFAFEG 1037 APA + A + P E Sbjct: 892 APAAETAPAEQAATPAASSVERVEPAAPAEP 922 >UniRef50_A5WCP3 RNAse E n=3 Tax=Proteobacteria RepID=A5WCP3_PSYWF Length = 1368 Score = 557 bits (1435), Expect = e-157, Method: Composition-based stats. Identities = 356/1052 (33%), Positives = 519/1052 (49%), Gaps = 49/1052 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKR+LINAT EE+RVAL G LYD D+E+ EQKKANIYKG +TR+EPSLEA FV+Y Sbjct: 1 MKRILINATHNEEVRVALCKGNHLYDFDLENRTREQKKANIYKGHVTRVEPSLEAVFVEY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G++R GFLP++EIA EY N NI+ +++EG E+IVQ++KEERGNKGAAL+T++ Sbjct: 61 GSKRQGFLPVREIASEYLSGNPREE---NIRKLIKEGDELIVQVEKEERGNKGAALSTYV 117 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNP+ GGISR+I G R ++K L +L+LP+GM +IVRTAG+GK+ E L Sbjct: 118 SLAGRYLVLMPNNPKGGGISRQISGKLREDMKRMLGNLDLPKGMSVIVRTAGIGKTQEDL 177 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q DL+ L W AI+ + +P L+HQE+ V+ RA RDYLR DI EI IDN + A Sbjct: 178 QHDLNHLLNIWNAIQDQNKKYASPRLVHQEAGVVTRAVRDYLRDDITEIWIDNEEAFIEA 237 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 I A+ P K++ YT P+FS + +E QIE+A+QREVRLPSGGSIVID TEAL Sbjct: 238 ETFIKAV-MPTQIDKLRKYTDFEPMFSSFNVERQIETAYQREVRLPSGGSIVIDQTEALV 296 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSA++T+G D+ ETA++TNLEAADEIARQLRLRD+GGLIVIDFIDM +HQ+ VE Sbjct: 297 SIDINSAKSTKGADVAETAYHTNLEAADEIARQLRLRDMGGLIVIDFIDMNDSKHQKEVE 356 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 RL EA + DRAR+Q ISRFGL+EMSRQRL PSL ES+ ++CPRC G G +RD SLS Sbjct: 357 KRLVEATKYDRARVQFGEISRFGLMEMSRQRLRPSLEESTGYICPRCHGNGMIRDLRSLS 416 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSI+R IE+ ALKE EV A VP IA++LLNEKR ++ + G R I+P+ +E Sbjct: 417 LSIMRQIEQTALKERHGEVQAEVPTDIAAFLLNEKRESLV-YLEQDSGTRITILPHAHLE 475 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEF--AERKRPEQPALATFAMPDVP 538 +P++++ G + + +E L E ++ AE +RPEQ + Sbjct: 476 SPNFNIHFNHHGFAPASYERVTDTQQQETSGLGYEVDWQTAESERPEQQPVRQPRKTAPQ 535 Query: 539 PAPTPAEPAAPVVAPAP----KAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQP 594 + ++PA A P A P PA L LF+ + + + Sbjct: 536 ASADTSKPAEAAKAATPVANTAAKPQQPAEAQVEQAKPAAVAWLSNLFAPTPQAQMSATV 595 Query: 595 APKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETR 654 + A+ + + + + + Q +A+ Sbjct: 596 SSADAAQAIEAIVNTGAQSRGAFGQVSAAPAAAPVASATVAAKPASAPTASEQANSADDT 655 Query: 655 ESRQQAEVTEKARTA-----DEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQ 709 E+ + D++ P R + +DK+ A K+ N + + ++ Sbjct: 656 ETDNDKDRRRSRNNRSRNKYDKRSKPDNRRRSQDKEDKKSADTADKSDNRQVAEQEPNKE 715 Query: 710 EERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQE------APAPRT 763 + P R + + + + + A + ++T + + P Sbjct: 716 LPKREPNSKRESRGAIERGDTKQPNKASSDNRSDRNQKTDEKSRSADKNGSRSNSERPVD 775 Query: 764 ELVKVPLPVVAQTAPEQQE---------ENNADNRDNGGMPRRSRRSPRHLRVSGQRRRR 814 AQ ++ E +++ + P + SP + V+ Q+ + Sbjct: 776 PNEVNLRVTEAQNTLKKSEVVHICLDDAKSSQKSAQAQSKPEVQQASPNNRAVTRQQSTQ 835 Query: 815 YRDERYPTQSP--------MPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVH 866 + +++ P A A+ + + P +D + ++Q+ Sbjct: 836 AEPQADNSKAAKSEASRDHKPSDDASAAQPNTAAVTEVAEPASNMKDGAAQGDQKQKADT 895 Query: 867 VQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQP 926 V V+ EP P + + P + E AA P Sbjct: 896 KTESVVAPSVSKDAEPKADQPAKVQASTAQSEPAEAV-IDTEATPAKAAANNAAHAARSP 954 Query: 927 QVITESDVAVAQEVAEQAEPVVEPQEETADI---------EEVVETAEVVVAEPEVVAQP 977 + T V +++ A + + +E + + + + Sbjct: 955 EEATAQPVVASEDQAPETASLSFDAKELFANRYVAAQKYGQASNDPRVIKASLEAQAQSF 1014 Query: 978 AAPVVAEVAAEVETVAAVEPEVTVEHNHATAP 1009 AAP E H H P Sbjct: 1015 AAPEADEPELLAPMATITGSVGQFIHTHLAQP 1046 >UniRef50_A8ZW09 Ribonuclease, Rne/Rng family n=2 Tax=Desulfobacteraceae RepID=A8ZW09_DESOH Length = 499 Score = 557 bits (1434), Expect = e-156, Method: Composition-based stats. Identities = 224/502 (44%), Positives = 316/502 (62%), Gaps = 7/502 (1%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 ++LINA EE R+A V RL + +E+ K+NIYKG + R+EPSL+A FVDYG Sbjct: 3 DKILINAVDTEECRIARVKDNRLCEFHLETTSRVTTKSNIYKGLVARVEPSLQAVFVDYG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFIS 121 ERHGFL +I +YF + +I+D+++ GQE++VQ+ K+ +KGAALTTF+S Sbjct: 63 EERHGFLQKHDIHTDYF---QDSKVDGSIRDLIKPGQEMLVQVVKDPIMHKGAALTTFLS 119 Query: 122 LAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 + G + VLMP + G+S++IE ++ R LKE ++ L +PE G+I+RTA G + + Sbjct: 120 IPGRFCVLMPGSV-TKGVSKQIEDEEERKRLKEIVSGLRVPENFGVILRTAAKGAAKTVI 178 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 DLS+ ++ W+ IKK ++ AP IH+E + VRA RDYL DI EILID P V + Sbjct: 179 AKDLSYLMRLWKTIKKEGMNQKAPAAIHKERDFAVRAIRDYLTADIQEILIDEPAVHQEV 238 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + + AL P + ++LY G P+F+ +++ESQIES F+ V+LPSGGSIV+ TEAL Sbjct: 239 KDFV-ALVSPKHAKIVRLYQGAKPIFTKHELESQIESIFENRVQLPSGGSIVLTQTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +ID+NS ++ + IEETA TNLEAA+EIARQLRLRD+GGLIVIDFIDM P ++ AVE Sbjct: 298 SIDVNSGKSRQKHSIEETALQTNLEAAEEIARQLRLRDMGGLIVIDFIDMKPRKNNAAVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 L+ V++D+AR + IS+FGLLEMSRQRL S+ SS C C G G V E L Sbjct: 358 RALKAHVKEDKARTDVGKISKFGLLEMSRQRLRQSIETSSMVTCGHCGGRGYVMATEKLG 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 +++LR + E+LK V A VP +A YLLN+KR+ + +E R+D + I + M Sbjct: 418 INVLRRLRLESLKHRGVAVTATVPAVVADYLLNKKRTELLELEARRD-LAITITGDPAMH 476 Query: 481 TPHYHVLRVRKGEETPTLSYML 502 + K + L Sbjct: 477 LGESDIRFEGKPNGSADGETDL 498 >UniRef50_Q0VQP0 Phosphoric diester hydrolase n=5 Tax=Gammaproteobacteria RepID=Q0VQP0_ALCBS Length = 1074 Score = 556 bits (1431), Expect = e-156, Method: Composition-based stats. Identities = 418/1030 (40%), Positives = 539/1030 (52%), Gaps = 5/1030 (0%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINAT EE+RVALVDGQRLYDLDIE EQKKANIYKGKITR+EPSLEAAFVD+ Sbjct: 1 MKRMLINATHPEEVRVALVDGQRLYDLDIEHRTREQKKANIYKGKITRVEPSLEAAFVDF 60 Query: 61 GAERHGFLPLKEIAREYFPANYSA-HGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 GAERHGFLPLKEI+R+YF + GR NIK+V++EGQEVIVQ+ KEERGNKGAALTTF Sbjct: 61 GAERHGFLPLKEISRQYFQKDPKDIQGRINIKEVIKEGQEVIVQVAKEERGNKGAALTTF 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ISLAG YLVLMPNNPRAGGISRRIEG++R +LKEAL +L +P+ MG+IVRTAG+G+SAE Sbjct: 121 ISLAGRYLVLMPNNPRAGGISRRIEGEERAQLKEALGALNIPDEMGVIVRTAGLGRSAEE 180 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 LQWDL++ LK W +I A++ R APFLI+QESNVI+RA RDYLR+DIGE+LID+ KV + Sbjct: 181 LQWDLNYLLKLWTSIDDASQDRKAPFLIYQESNVIIRAIRDYLRKDIGEVLIDSKKVYDE 240 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 A+ + + DF KIKLY E PLFS +QIESQIE+AF+REV+LPSGGSIVID TEAL Sbjct: 241 AQGFVQQV-MQDFQHKIKLYDDETPLFSRFQIESQIETAFEREVKLPSGGSIVIDPTEAL 299 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +IDINS+RAT+G DIEETA TNLEAA+EIARQLRLRD+GGLIV+DFIDM P R+QR V Sbjct: 300 VSIDINSSRATKGADIEETALQTNLEAAEEIARQLRLRDIGGLIVVDFIDMGPARNQRDV 359 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 ENR+R+A+ DRARIQ+ ISRFGLLE+SRQRL PSLGE+S VCPRC G G +RD +SL Sbjct: 360 ENRMRDALEADRARIQLGRISRFGLLELSRQRLRPSLGETSSIVCPRCDGQGHIRDVKSL 419 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 +LSILRLIEEE +KE T E+ A VPV +A+YLLNEKR + AIE VR VI+PN + Sbjct: 420 ALSILRLIEEEVMKERTGEIQAQVPVAVATYLLNEKRDPLRAIEKNH-KVRVVIIPNQNL 478 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPP 539 +TPH+ V R+R + + LS+ + L A + + E K E PP Sbjct: 479 DTPHFEVERIRDDQTSTQLSHEMDLLEGTKDADIASAQDTEIKTQEPAVRLMAPDTAPPP 538 Query: 540 APTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAE 599 V A + A K + KP +Q + Sbjct: 539 PKPVVAAPTAQVQNLGLLARLFSWLAQVFTAEPKPAKAKKDAPQRKSDNKPRQQQNNRGR 598 Query: 600 AKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQ 659 R + + D +RD + N R+N + + ++ + + Sbjct: 599 GGNNRNDSNNSDNRA-KNDNRNKRDGGKAGDNDNRNTRNKRQNDKDSGRKNDNRQADNRA 657 Query: 660 AEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPR 719 A+ R + R ER R ++ + +++ + + V Sbjct: 658 ADNRNDGRADTKDDGNRNERRGRNDNRRNNRNNDSRGEGRNDNRNGNRNDNKPDSKVSEG 717 Query: 720 RKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPE 779 K R Q + + ++ + P A+ R VAQ A Sbjct: 718 AKPRTRKQDNAADGADSKSSDKGPKAPRRTDAKDNRPLRERQRPNKANNSDGGVAQPAKA 777 Query: 780 QQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELAS 839 Q+ R+ P P V Q + A + E + Sbjct: 778 QRTAAPKPPRNEQPAPVDDEGHPATKLVPAQEPSAQAKRDDTPKKAATDKTAPLN-EQSP 836 Query: 840 GKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAP 899 + Q+ V + Q+ QP VT+ PVA A + Sbjct: 837 VTNQPQAAAEPKQEQTVAPAKVQQPAAEQPPVTKAPVAQTTAAPKVEDDKPASAQPTASD 896 Query: 900 VQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEE 959 A P E T + P+ + D + A P Sbjct: 897 TTTAAPAQEQPTPTADSTPQQPKADTPKAASTDDKPAPSAPQQAATTNAAPVAAQPATAA 956 Query: 960 VVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYV 1019 +T E ++ A + P + P P Sbjct: 957 PTQTPAPAKPAEENKSEEKPVTAEPAAPSRASNDPRSPGYKPTPVAPAPKVEEKPKPAPA 1016 Query: 1020 PEAPRHSDWQ 1029 + Sbjct: 1017 SNELPSRATE 1026 >UniRef50_C5BU48 Ribonuclease E n=1 Tax=Teredinibacter turnerae T7901 RepID=C5BU48_TERTT Length = 1070 Score = 555 bits (1430), Expect = e-156, Method: Composition-based stats. Identities = 420/1055 (39%), Positives = 571/1055 (54%), Gaps = 35/1055 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EELRVALVDGQ LYDLDIE+ EQ+KANIYKGKITRIEPSLEAAFV+Y Sbjct: 1 MKRMLINATQPEELRVALVDGQWLYDLDIENRLKEQRKANIYKGKITRIEPSLEAAFVEY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSA-HGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 R+GFLPLKEI+REYF + GR IKDV++EG EVIVQ+DKEERGNKGAALTTF Sbjct: 61 DKGRNGFLPLKEISREYFLKQPNEIDGRIRIKDVVKEGMEVIVQVDKEERGNKGAALTTF 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ISLAG YLVLMPNNPRAGGISRRI+GDDR+ELK+AL+ +E+P GMG+IVRTAGVG+SAE Sbjct: 121 ISLAGRYLVLMPNNPRAGGISRRIDGDDRSELKDALSQIEIPNGMGIIVRTAGVGRSAEE 180 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 LQWD+++ W I++AA AP + QESNVI+RA RDYLR DIGE+++D+ Sbjct: 181 LQWDMNYLTTLWNNIQEAANQSTAPAFLFQESNVIIRAIRDYLRPDIGEVIVDDIAAYNQ 240 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 A + + P++ SK+KLY +PLF+HYQIE QIE+AF+REV+LPSGGSIVID TEAL Sbjct: 241 AADFVQMV-MPNYRSKVKLYEKSVPLFNHYQIEGQIETAFEREVKLPSGGSIVIDVTEAL 299 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +IDINS+RAT+GGDIEETA TNLEAADEIARQLRLRD+GGL+VIDFIDM PVR+QRAV Sbjct: 300 VSIDINSSRATKGGDIEETALQTNLEAADEIARQLRLRDMGGLVVIDFIDMQPVRNQRAV 359 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 ENR+R+A++ DRAR+Q+ ISRFGLLEMSRQRL PSLGE++ VCPRCSG GT+R +S+ Sbjct: 360 ENRVRDALKMDRARVQVGRISRFGLLEMSRQRLRPSLGETTSKVCPRCSGQGTIRGTKSI 419 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 +LSILRL+EEEA KE + E+ A+VPVP+A+YLLNEKR +++ IE R R ++PN +M Sbjct: 420 ALSILRLVEEEAQKERSAEIRAVVPVPVATYLLNEKRKSISDIENRHQ-TRVTVLPNTEM 478 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPP 539 TPHY V R+R ++T +SY + H+E S V Sbjct: 479 VTPHYEVTRLRDDDDTSEISYTIELNHQEDQDDSS-----------------APTAPVAM 521 Query: 540 APTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAE 599 + AP A P L++R ALK+LF+ EE KP + ++ Sbjct: 522 PKPVVQQLAPSQPAPEPVKQAPAKTAEGPSLIARIIDALKSLFAPEEEAKPATKGNQRSH 581 Query: 600 AKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQ 659 K + +N + +R + E SDNR++ R R + ++ + R++ + Sbjct: 582 QKKRNANTGNRNNRNRKPRDRDR-----DGDETSDNRKQQRDARSDSGKRDSNNRDNNNR 636 Query: 660 AEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALN-VEEQSVQETEQEERVRPVQP 718 + D + RR RR+++ R ++ + + V+ S E + R + Sbjct: 637 DSNSRDNNGRDNNRNDRRRSRRRKDESGRSSESDTQVQASVDNTSASEDKPARRPANRRG 696 Query: 719 RRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAP 778 R ++RQ E + + EE + + + K + Sbjct: 697 RPQERQRGPLPEVEAGLQQADDGLDTSEELLDSVENLTADTDQENTPAKEGGSSRRRRRS 756 Query: 779 EQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELA 838 + + + P + + + E T + + + A L+ Sbjct: 757 RGRRGERNADSTSENSPELQETQTDEANATPENAEKPVPEATSTINQLETQLDNADAALS 816 Query: 839 SGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEA 898 + + + + + T E S Sbjct: 817 DALSELEGALHEARQEHEANAVREAAAAKALLSTAPADNIVAEAETSPETNPAPEADTAP 876 Query: 899 PVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIE 958 A+ QP+ E A + ++SD + + Q E E +++ AD Sbjct: 877 ETATAKQQPQSQNAPDSETSVGASPDTANDSSDSDTEIVESAEVQVEAATE-EDKPADTA 935 Query: 959 EVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMT---RAPA 1015 A+ + V E ++V E V + A AP + A A Sbjct: 936 PTPNVADAP-----SESAAGDAVEIAETVEADSVEPAESAPVVAQDEAAAPASSTNTAIA 990 Query: 1016 PEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHA 1050 + E +H + +H Sbjct: 991 SDEPSEPAKHERASNDPRYMPKPVVNVQVISVNHE 1025 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 40/411 (9%), Positives = 96/411 (23%), Gaps = 3/411 (0%) Query: 508 EAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQ 567 + + S E + + A+ P PA P P P+ A Sbjct: 660 KDESGRSSESDTQVQASVDNTSASEDKPARRPANRRGRPQERQRGPLPEVEAGLQQADDG 719 Query: 568 PGLLSRFFGALKA-LFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTR 626 +++ +E P ++ + R + + + + E ++T+ Sbjct: 720 LDTSEELLDSVENLTADTDQENTPAKEGGSSRRRRRSRGRRGERNADSTSENSPELQETQ 779 Query: 627 SERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDD 686 ++ + E + ET+ A +++ + R+ Sbjct: 780 TDEANATPENAEKPVPEATSTINQLETQLDNADAALSDALSELEGALHEARQEHEANAVR 839 Query: 687 KRQAQQEAKALNVEEQ--SVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPV 744 + A + + + + ET E P + ++ Q+ + Sbjct: 840 EAAAAKALLSTAPADNIVAEAETSPETNPAPEADTAPETATAKQQPQSQNAPDSETSVGA 899 Query: 745 VEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRH 804 +T E+ + A N AD + Sbjct: 900 SPDTANDSSDSDTEIVESAEVQVEAATEEDKPADTAPTPNVADAPSESAAGDAVEIAETV 959 Query: 805 LRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEE 864 S + + + A + + + Sbjct: 960 EADSVEPAESAPVVAQDEAAAPASSTNTAIASDEPSEPAKHERASNDPRYMPKPVVNVQV 1019 Query: 865 VHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHP 915 + V + EP ++ P + +P P Sbjct: 1020 ISVNHEIRMGRPLDTSEPANIVRNPRDLQRAPNDPRRTRKPAPTEPSAAEN 1070 >UniRef50_B1H0J1 Ribonuclease G n=1 Tax=uncultured Termite group 1 bacterium phylotype Rs-D17 RepID=B1H0J1_UNCTG Length = 488 Score = 555 bits (1429), Expect = e-156, Method: Composition-based stats. Identities = 159/492 (32%), Positives = 262/492 (53%), Gaps = 18/492 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 +K+ +I EE RVA++D +L++L IE E+ NIYKG++ I P+L + FVD Sbjct: 14 VKKEIIVNRTFEESRVAILDNGKLFNLFIERRESEKILNNIYKGRVKNIVPALNSLFVDI 73 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R +L + +I +E+ K++++ GQ+++VQ+ KE NKGA +T I Sbjct: 74 GFGRGAYLDVCDILKEHRSK----------KNMIKAGQDIMVQVYKEPIHNKGAKVTMAI 123 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 SL G LV MP + G+S+ I+ + LK A L+ G+I+RT + Sbjct: 124 SLTGRLLVYMPFSNNI-GVSKNIKDKHEYNRLKSMTAELKKDISGGIIIRTKAEKATKAE 182 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 ++ ++ + ++ W +I + + LIH++ ++ + DY D+ + ID+ K L+ Sbjct: 183 IKNEIKYLIRLWASITERFDDAKPMSLIHKDLGLVFQTVIDYFSDDVIFMRIDSQKELKD 242 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + + P+F +I Y P+F Y IE +I+ +V L SGG ++I E+L Sbjct: 243 VTDFV-EIVLPEFLDRIVFYDDRTPIFKKYGIEEEIKRLCSNKVWLSSGGYLIIQEAESL 301 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 AID+NS + T E+TA TNLEAA+EIARQLRLR++GG+IVIDFIDM ++R V Sbjct: 302 CAIDVNSGKFTAKSTQEDTAVITNLEAAEEIARQLRLRNIGGIIVIDFIDMKKASNRRKV 361 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 LR+A + D+A+I+I I+R GL+EM+R+R SL +CP C G V ES+ Sbjct: 362 LETLRKATKVDKAKIEIWPITRLGLIEMTRERKRKSLFSILGDICPVCHGLSFVLSKESI 421 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 +++ I++ + + + + + Y + +K A GV I + ++ Sbjct: 422 FINVCDEIKQLKIDGYDGRIKIKLNIDVIEYFMKKK-----ARLEELFGVEFDIEASTEL 476 Query: 480 ETPHYHVLRVRK 491 Y +L + Sbjct: 477 LREEYKILYLNS 488 >UniRef50_B6BTS7 Ribonuclease E n=2 Tax=Betaproteobacteria RepID=B6BTS7_9PROT Length = 738 Score = 554 bits (1426), Expect = e-156, Method: Composition-based stats. Identities = 298/753 (39%), Positives = 425/753 (56%), Gaps = 15/753 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRML NATQ EE+RVA+++ + DLD E EQ+K+NIYKG ITR+EPSLEAAFV+Y Sbjct: 1 MKRMLFNATQSEEIRVAIINDSTIEDLDYERSSREQRKSNIYKGTITRVEPSLEAAFVNY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +RHGFLP KEI++E++ S +I DV+ EGQEVIVQ+ KEERGNKGAALTTF+ Sbjct: 61 GVDRHGFLPFKEISKEFYSKK-SRKKNLSIADVINEGQEVIVQVSKEERGNKGAALTTFL 119 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG Y+VLMPN+ +GGISRRIEGD+R+ KE L+ L++ +GM +I RTAG+G S E + Sbjct: 120 SLAGRYIVLMPNSSESGGISRRIEGDERSNFKEVLSQLKVKKGMSVIGRTAGIGASVEEI 179 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDL + + EAI+ A+ + APFLI+QESN+++RA RDY DI EILIDN + + A Sbjct: 180 QWDLDYLTQLSEAIQGASGQQEAPFLIYQESNLVIRAIRDYFNTDIEEILIDNQDIYDQA 239 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 Q + + PD++ +I+LY LFS + IE+QIESAF REV+LPSGG IVID TEAL Sbjct: 240 SQFMNHV-MPDYADRIQLYEESTALFSKFNIENQIESAFLREVQLPSGGVIVIDHTEALV 298 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +ID+NS+R+T+G DIE TAFNTNLEAA E+A+QLRLRD+GGLIV+DFIDM +HQR VE Sbjct: 299 SIDVNSSRSTKGRDIENTAFNTNLEAAREVAKQLRLRDIGGLIVVDFIDMENPKHQREVE 358 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 LR+A++ D+ARIQ ISRFGL+E+SRQRL PS+GE+S+ CP+C+GTG +RD +S + Sbjct: 359 ECLRDALKHDKARIQTGRISRFGLMELSRQRLRPSIGETSNGECPKCNGTGRIRDFQSSA 418 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 L I+R+I+E++ K+ Q++ VPV +A++LLNEKR + E+ + + I+ N + Sbjct: 419 LHIIRMIQEQSNKKQGQKISVQVPVDVATFLLNEKREIIIQTESEGNN-KIFIIANKYFD 477 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 P + + G + + ++ E K + PA+ Sbjct: 478 VPQFKITSSDLGNKKGLSYQEVDVP----DVENLDDNEQETKVKQIPAVKGVIPEKRSRK 533 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 + AT + S + P Sbjct: 534 SKNKSLFGFIKGLIASDDDATEDFSEAASD--------RNNESSQHLEESEGNKKPYRNN 585 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 + R R R N + N + E + E+N + ++ + + Q Sbjct: 586 RRRRNNRSRNYRSNQQNQENVNKKPEMVMVETPVDVEKNSDKNLDSVNKSKDKPKRNQPR 645 Query: 661 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR 720 + E+ + + + + + Q + V + + E+ + Sbjct: 646 KKAEELQDVNLSDVGLKLVETEKKSSQGAPQDDQAKKPVRRKKASWAKSEKTAPKKTEKL 705 Query: 721 KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEP 753 + + A+ AE Sbjct: 706 VMVETKDAPKKSTKTAKTRTSTTKKSTKKTAEK 738 >UniRef50_B0VJP4 Ribonuclease G n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VJP4_9BACT Length = 505 Score = 553 bits (1424), Expect = e-155, Method: Composition-based stats. Identities = 149/501 (29%), Positives = 256/501 (51%), Gaps = 23/501 (4%) Query: 1 MKR-----MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEA 55 MK+ +I E RVA+++ RL +L +E + NIYKG + + P + A Sbjct: 1 MKKDSYNTEIIVNVHPLEKRVAVLEDSRLVELFVERREQQNIVGNIYKGIVKDVLPGMGA 60 Query: 56 AFVDYGAERHGFLPLKEIAREYFP--------ANYSAHGRPNIKDVLREGQEVIVQIDKE 107 AF++ G ER FL +I ++ + I +L+ GQE++VQ+ K Sbjct: 61 AFIEIGLERTAFLHYSDIVMDFLDIYENALPRTKVNPEDSSQIDKLLKPGQEIVVQVHKG 120 Query: 108 ERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALASLELPEGMGL 166 G+KGA LT IS+ G YLVL PN + +SR+I +R+ ++ L+ ++ P G GL Sbjct: 121 PIGSKGARLTGQISIPGKYLVLFPNKDKI-AVSRKIYSQAERSRIRNLLSGIKDP-GYGL 178 Query: 167 IVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDI 226 IVRT G + Q + +K W I+K + AP + +E+ + RD +++ Sbjct: 179 IVRTEAEGCEEDDFQTEYKALIKTWHLIEKQIKYAKAPVCVFEENALENYLIRDLFGENV 238 Query: 227 GEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLP 286 ++ID+ + + + P+ + I++Y + P+F + IE +IE+ + LP Sbjct: 239 DRLVIDDKNFAKRIISQLTDIS-PELINNIEIYREDSPIFDAWGIEKKIETVLHSRIYLP 297 Query: 287 SGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVID 346 SGG+I I+ TEAL AID+N+ T + +ET TNLEAA EIARQ+RLRDL G+I+ID Sbjct: 298 SGGNIKIEQTEALVAIDVNTGSFTGKTNYDETVRKTNLEAAAEIARQIRLRDLSGVIIID 357 Query: 347 FIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPR 406 FIDM +++ V L++ +R+DRA+ ++ + GL+E++R+R+ +L + CP Sbjct: 358 FIDMVEEKYKNEVLEMLKKGLRRDRAKNKVYSFTELGLVEVTRKRMRNTLISNFSDPCPF 417 Query: 407 CSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQ 466 C+G+G + +S+ + I R + + + +V + +++ E Sbjct: 418 CNGSGRILSKDSVIMRIYRWLNRSDYFIKDKNLRIVVNPDLLNHIKQHNEDFTAYKE--- 474 Query: 467 DGVRCVIVPNDQMETPHYHVL 487 + + + + V Sbjct: 475 ---QIEFTSDPSIRIDQFKVY 492 >UniRef50_B3DX65 Ribonuclease G and E n=7 Tax=Verrucomicrobia RepID=B3DX65_METI4 Length = 554 Score = 552 bits (1423), Expect = e-155, Method: Composition-based stats. Identities = 187/499 (37%), Positives = 276/499 (55%), Gaps = 17/499 (3%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 + + + + E RVAL+D L + IE ++ NIYKG++ I+ L+A FVD G Sbjct: 49 NKEIAISCEPLERRVALLDEGLLEEFAIERGSQKEIAQNIYKGRVNNIDQGLKALFVDIG 108 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPN------------IKDVLREGQEVIVQIDKEER 109 ++ FL + A R I ++ G EV+VQ+ K Sbjct: 109 IGKNAFLHFWDAIPAALDAGIELFERKGTKSKARLPRAEDIPNIYPPGSEVVVQVTKGPI 168 Query: 110 GNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIV 168 G KG +TT I+LAG YLVLMP N + GISR+IE +R L++ L L +PEGMG+I+ Sbjct: 169 GTKGPRVTTNITLAGRYLVLMPYNEQ-FGISRKIEDPKERARLRKILNELRIPEGMGVII 227 Query: 169 RTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGE 228 RT G G+ + DL+ L+ W AI++ PAP L++ E ++I R RD+L D+ + Sbjct: 228 RTVGEGQKSRYFVRDLAILLQKWNAIEQKMRECPAPVLLYMEPDLIERTVRDFLTDDVEK 287 Query: 229 ILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSG 288 I ID+ ++ + +A + + KI Y IPLF IE QI++AF R+V LPSG Sbjct: 288 IYIDDENEVKRIKDLVAQISK-RSQKKIIYYNEPIPLFEKLNIERQIDTAFMRKVELPSG 346 Query: 289 GSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFI 348 G I+ID TEAL AID+N+ +A G D + TN+EAA EI+RQLRLR++GGL+VIDFI Sbjct: 347 GYIIIDETEALVAIDVNTGKAKVGKDQDNMILKTNIEAAAEISRQLRLRNIGGLVVIDFI 406 Query: 349 DMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCS 408 DM R Q V +L+E VR+DRA+I + IS FGL+EM+RQR+ S+ S + CP C Sbjct: 407 DMKSRRDQHLVFEKLKECVRKDRAKINLLPISSFGLVEMTRQRVQESIWHSLYVPCPHCH 466 Query: 409 GTGTVRDNESLSLSILRLIEEEAL-KENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQD 467 G G V+ E++S+ I R I +E+ I+ + L +E + +E R Sbjct: 467 GRGMVKSPETMSIEIQRAINRVIRLHPEVKELRVILNGFVLDRLKSEDEELLVDLERRMQ 526 Query: 468 GVRCVIVPNDQMETPHYHV 486 G + + ++ + + Sbjct: 527 G-KLYFRTDPRINYEEFKI 544 >UniRef50_D2R4N9 Ribonuclease, Rne/Rng family n=2 Tax=Planctomycetaceae RepID=D2R4N9_9PLAN Length = 543 Score = 552 bits (1422), Expect = e-155, Method: Composition-based stats. Identities = 208/535 (38%), Positives = 302/535 (56%), Gaps = 43/535 (8%) Query: 1 MK-RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 MK MLIN +Q EE R+A+++ L +L IE + NIY+G+I +EPS++AAFVD Sbjct: 7 MKSEMLINVSQPEECRIAIIEDGLLEELYIERASQDNYVGNIYRGRIVNLEPSIQAAFVD 66 Query: 60 YGAERHGFLPLKEIAREYFPANY------------------------------------- 82 +G R+GFL + ++ +YF Sbjct: 67 FGVGRNGFLHISDVEPQYFRQGGYDPAEQIGGGRLADIDTGEDDDAPRPQQRRERRPPRG 126 Query: 83 -SAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISR 141 +P I+++ R G EV+VQ+ KE G KG L+T+IS+ G YLVLMP R G+SR Sbjct: 127 GRPRVKPPIQEIFRRGDEVLVQVIKEGIGTKGPTLSTYISIPGRYLVLMPALGRV-GVSR 185 Query: 142 RIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAES 200 +IE D+ R L++ L L P+G+G IVRTAG ++ + L D+++ L+ W+ I + + Sbjct: 186 KIEDDELRRTLRDTLLELNPPKGLGFIVRTAGQDRTKKELSRDMAYLLRLWKVIVRRLKK 245 Query: 201 RPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYT 260 P I++ES++I+R RD +I I ID+P+ E A++ + L P +++ Y Sbjct: 246 TAGPATIYEESDMIIRTIRDIFTAEIDAIYIDHPEAFERAKEFLQ-LVMPRNVNRLHQYE 304 Query: 261 GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAF 320 G PLF Y++E +I +QR+V L GGSIVID TEAL AID+NS D +ETA+ Sbjct: 305 GREPLFHKYKVEQEIVQIYQRKVPLRGGGSIVIDQTEALVAIDVNSGNFRAEDDADETAY 364 Query: 321 NTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHIS 380 N+ AA EIARQLRLRDLGG+IV DFIDM RH+R VE LR+A+R+DRAR +I S Sbjct: 365 QLNISAAKEIARQLRLRDLGGVIVNDFIDMRKERHRRGVERALRDAMRRDRARTKILRTS 424 Query: 381 RFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVH 440 FGL+EM+RQR+ PSL S + CP CSG G V+ ES+++ ++R++ + + N V Sbjct: 425 PFGLIEMTRQRIRPSLKRSVYGDCPCCSGRGVVKTAESMAIEVVRMLMLASQQPNVSRVT 484 Query: 441 AIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEET 495 V +ASYL N+KR + +E V I+ ++ H V Sbjct: 485 VRVNSEVASYLNNKKRREIMKLEDDAQMV-VQILSHEGAFPEHLQVECRDNEGRE 538 >UniRef50_A4XJ17 Ribonuclease G n=7 Tax=Clostridia RepID=A4XJ17_CALS8 Length = 571 Score = 551 bits (1420), Expect = e-155, Method: Composition-based stats. Identities = 169/524 (32%), Positives = 281/524 (53%), Gaps = 6/524 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M+ +I E RVA+++ + L ++ IE + NIYKG + I P ++AAFV+ Sbjct: 1 MQSEIIVDVSFGETRVAVLEDKELVEIYIERNDQQSIVGNIYKGVVENILPGMDAAFVNI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +++ FL L +I R F + LR GQE++VQ+ KE KG +TT I Sbjct: 61 GQDKNAFLYLGDINRLEFGDTDEYYEIKTNPLALRCGQEIVVQVIKEAYDQKGPRVTTNI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIE-GDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 +L G YLVL+PN GIS+RIE ++RT LKE + P+GMGLIVRTA GKS E Sbjct: 121 TLPGRYLVLLPNTDYI-GISKRIEFEEERTRLKEIACKI-KPDGMGLIVRTAAEGKSEEV 178 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 L+ +L F W+ I++ ++ AP L++++ +++ +A RD + +I++ K Sbjct: 179 LRNELEFLRNLWQKIRQKSKES-APVLLYKDYDLVFKAVRDMFTNQVDRFVINDRKKYNK 237 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + ++ P SK++ + +F ++QIE ++ A + + L SGG IVID TEAL Sbjct: 238 IIEFLSTYA-PSLKSKVEYFNLATNIFEYFQIEQKLSKALSKRIWLKSGGYIVIDETEAL 296 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+N+ + D+ ET TNLEAA EIARQ+RLRD+GG+I+IDFIDM HQ+ V Sbjct: 297 TVIDVNTGKFVGKNDVSETILKTNLEAAVEIARQIRLRDIGGIIIIDFIDMKNPEHQKLV 356 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 + L+EA+++D+ + + I+ GL+EM+R+++ L CP C G+G + E++ Sbjct: 357 LDALKEALKRDKTKTVVVGITPLGLVEMTRKKVRQRLSCIMQSCCPYCEGSGKILSPETV 416 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 L +L+ IE ++ + + L + + ++ + + + + + Sbjct: 417 GLKVLKEIEWYFKNRVEEKFFVEINTKVCEVLRKGEVDRIKELQEKYKK-KVYLKASSNI 475 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKR 523 + + V+ + L L + E + E++F + Sbjct: 476 HINKFTICPVKDEDHYMALCGALSEGDEVLAFVEEEDKFNPKNA 519 >UniRef50_A1AW88 Ribonuclease, Rne/Rng family n=3 Tax=Gammaproteobacteria RepID=A1AW88_RUTMC Length = 584 Score = 551 bits (1419), Expect = e-155, Method: Composition-based stats. Identities = 246/539 (45%), Positives = 346/539 (64%), Gaps = 4/539 (0%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M +LINA EE+RV +V ++L L+IE+ +++ K NIY GKI+R+E SLEAAFVDY Sbjct: 1 MNHILINAIYSEEIRVGIVKNKKLTGLNIETSLNKKTKGNIYHGKISRVEQSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G E+ GFLP KE+A + + I DVL+EGQE+IVQI+KEERGNKGAAL+T+I Sbjct: 61 GKEKQGFLPFKEVAETLHNDVKAKGEKLTISDVLKEGQEIIVQIEKEERGNKGAALSTYI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LAG+Y++LMPNNP+ GISR+I DR LKE ++ + LP GLI+RTAG GKS E L Sbjct: 121 NLAGAYMILMPNNPKNHGISRQIVALDRQSLKEIISKIILPNHSGLIIRTAGSGKSFEEL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QW++ + W++I A +R APFLI+QES++I+R RD+LR D ++ID + + A Sbjct: 181 QWEVDYLSDLWKSINTATLTRSAPFLIYQESDIIIRTLRDHLRSDTDSVIIDELEAFQNA 240 Query: 241 RQHIAALGRPDFSSKIKLYT-GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 ++ ++ P + +IK + E LF+H IE+Q++S F REV L +G IV D TEAL Sbjct: 241 KEFVS-FVLPHYLDRIKFFDVSEHSLFNHMGIEAQVKSVFNREVSLRTGAIIVFDPTEAL 299 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 TAIDINSARAT+G DIEETA+NTNLEA EIA QL+LRD+GGL+VIDFIDM H+ ++ Sbjct: 300 TAIDINSARATKGADIEETAYNTNLEATKEIALQLQLRDIGGLVVIDFIDMASEEHRVSI 359 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 E + +A DRARIQI IS+FGLLEMSRQRL S+ ES C C G GT +L Sbjct: 360 EKAMEKATNADRARIQIGTISQFGLLEMSRQRLMNSVTESVEKPCSACHGRGTTPTIPTL 419 Query: 420 SLSILRLIEE-EALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 +L+ILR +E+ + T + + + +Y+LNEKR + +E + G++ ++PN Sbjct: 420 ALTILRQLEDGCNAAKQTAHLTIQSSIEVITYILNEKRQEIIKLEGKH-GIKITLLPNPY 478 Query: 479 METPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 M+ P++ + + + + + SY + +A + AE +T Sbjct: 479 MQFPNFTINKQKGSKRSQHKSYQSISKPQHVLAENGLSDQAEIPAINVNRPSTRVPEKK 537 >UniRef50_A7C082 Ribonuclease G and E n=1 Tax=Beggiatoa sp. PS RepID=A7C082_9GAMM Length = 518 Score = 551 bits (1418), Expect = e-155, Method: Composition-based stats. Identities = 168/520 (32%), Positives = 254/520 (48%), Gaps = 36/520 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M ++ E RVA+++ L ++ IE +NIYKG++ R+ P ++AAFV+ Sbjct: 1 MSEEVLINVTSRETRVAMIENGILQEVIIERTSKRGLVSNIYKGRVCRVLPGMQAAFVEI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ER FL L +I + A I ++L EG+ ++VQ+ K+ G KGA LT I Sbjct: 61 GLERAAFLHLSDIINTHLQAGIEP--ANQIDELLHEGKTLLVQVIKDPLGTKGARLTAQI 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEAL------------------------ 155 S+ Y+VL+P +P GIS RIE ++R LK+ Sbjct: 119 SIPSRYVVLLPYSPNMIGISTRIESPEERQRLKDIALQHTGMVEQDKLTETKDNNETVMM 178 Query: 156 -------ASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIH 208 S+E + G I+RT L D+ F + W I++ L++ Sbjct: 179 HAVSSPKTSVESGKNYGFILRTVAEEAEENFLCADMDFLCRLWTDIQEKETKVKPCSLVY 238 Query: 209 QESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSH 268 ++ ++++R RD I +I ID+ PD I+ YTGE PLF Sbjct: 239 RDLSLVLRTIRDLSGSSIDKIKIDSRDTHHQVVNFAKKF-IPDLVPHIEHYTGERPLFDL 297 Query: 269 YQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAAD 328 Y I+ +I A + +V L SGG +VID TEA+T ID+N+ ++EET F TNLEAA Sbjct: 298 YSIDDEINKALEPKVPLKSGGYLVIDQTEAMTTIDVNTGGYVGSRNLEETIFRTNLEAAQ 357 Query: 329 EIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMS 388 IARQLRLR+LGG+I++DFIDM HQR V L + + +DR + IS IS+ GL+EM+ Sbjct: 358 AIARQLRLRNLGGIIILDFIDMKDEEHQRQVLRTLEKCLERDRTKSYISEISQLGLVEMT 417 Query: 389 RQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIA 448 R+R SL + CP C G GT++ E++ I R I + TQ+ + I Sbjct: 418 RKRTRESLEHTLCRTCPTCRGRGTIKTAETVCYDIFRDIVRFTQQFETQKFLVLASQKIV 477 Query: 449 SYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLR 488 +L ++ ++V +E G Y ++ Sbjct: 478 DTMLEDESNSVLELEESI-GCSIRFQVETSYSQELYDIIP 516 >UniRef50_A3JIF1 Ribonucleases G and E n=2 Tax=Gammaproteobacteria RepID=A3JIF1_9ALTE Length = 1092 Score = 550 bits (1417), Expect = e-155, Method: Composition-based stats. Identities = 445/1076 (41%), Positives = 568/1076 (52%), Gaps = 29/1076 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINAT EELRVALVDGQRL+DLDIES EQKKANIYKGKITR+EPSLEAAFVD+ Sbjct: 1 MKRMLINATHPEELRVALVDGQRLFDLDIESSSREQKKANIYKGKITRVEPSLEAAFVDF 60 Query: 61 GAERHGFLPLKEIAREYFPA-NYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 GA+RHGFLPLKEI++EYF G+ NIKDV+ EGQEVIVQ+DKEERGNKGAALTT+ Sbjct: 61 GADRHGFLPLKEISKEYFKKSPGQIEGKVNIKDVIAEGQEVIVQVDKEERGNKGAALTTY 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ISLAG YLVLMPNN RAGGISRRIEG++R +LKEA+ +++P+ MG+IVRTAG+G+++E Sbjct: 121 ISLAGRYLVLMPNNARAGGISRRIEGEERAQLKEAMNQVQVPKSMGIIVRTAGIGRNSEE 180 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 LQWDL + ++ WEAI +AA R APFLIHQESNVI+RA RDYLRQDIGE+LID V E Sbjct: 181 LQWDLDYLVQFWEAITQAAGERKAPFLIHQESNVIIRAVRDYLRQDIGEVLIDAAAVHED 240 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + A+ P F +KIKLY+ EIPLFS YQIE QIE+AFQREV+LPSGGSIVID TEAL Sbjct: 241 VLNFVRAV-MPTFENKIKLYSDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEAL 299 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +IDINS+RAT+G DIEETA TNLEAA+EI RQLRLRD+GGLIVIDFIDMTP R+QR V Sbjct: 300 VSIDINSSRATKGHDIEETALQTNLEAAEEIGRQLRLRDMGGLIVIDFIDMTPARNQREV 359 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 EN++REA+ DRAR+Q+ ISRFGLLEMSRQRL PSLGE+ VCPRC G GT+R ESL Sbjct: 360 ENKMREALEIDRARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIESL 419 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 +LSI+RLI EE+ K+ T EV A+VPV +A++LLNEKR + IE Q+ V VIVP QM Sbjct: 420 ALSIMRLIYEESSKDKTGEVRAVVPVSVATFLLNEKRKQLATIEANQE-VSIVIVPVPQM 478 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPP 539 ETPH+ ++R+R E E + + +++P + A ++ P Sbjct: 479 ETPHFEIIRMRDDETGSEHVSSHQVAQEYSEREEEVADVTVQEKPVREQAAVKSVRPASP 538 Query: 540 APTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAE 599 P PA A A A G+ SR + F+G EE++P + Sbjct: 539 VPVPATKPAATPAKAAAEK------TRDEGMFSRLGRKIALFFNGEEESQPAADSSSNRN 592 Query: 600 AKPERQQDRRKPRQ-NNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQ 658 AK DR + R ++R DR +RR TR R + D R R+ + ++ + + Sbjct: 593 AKQAGGDDRSRQRPTSSRNDRQDRRKTRVARDDQQDTRSRGERSSSSSSSGSSNLSDDNR 652 Query: 659 QAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQE-----------T 707 + ++ + RS + + Q + S T Sbjct: 653 SNRTDDSRSRSNRGRTRSEGRSEDKTNAGSQNSNAQSSSAQSSNSQSSSAQSNNVQNGNT 712 Query: 708 EQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVK 767 + RR + ++ R P E+ I Q++ R+ Sbjct: 713 QSSGNDTRRDGRRDNQNRSRSNRDSSRDTSRDGNKPNAEQADQKPAIEQKSAELRSSSPS 772 Query: 768 VPLPVVAQTAPEQQEENNADNRDNGGMPRRSRR---SPRHLRVSGQRRRRYRDERYPTQS 824 + PRRSR SP VS R+ Q Sbjct: 773 PSYNDQNDAQSPAVAGKAGGDEKRRSKPRRSRGRDGSPAEKPVSNPAERKAARSEIHQQD 832 Query: 825 PMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVV 884 P T A K + + Q EQ V + E V Sbjct: 833 TQPETRDAEDRAKAKAKAAEKPADAQVQPSAAATPAEQAAPQVAQNPADASPETTSEQPV 892 Query: 885 SAPVVEEVAGVV---EAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVA 941 +A VE+ A P E+ H A + + A + Sbjct: 893 AAKPVEQSPEPEVSKPALPASEVPVEAAEESAHVSAAKAIPSRIDAYNGGTRKAADKAEK 952 Query: 942 EQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTV 1001 A V P ++A ++ V AE AE A E A + Sbjct: 953 ADAPEVDSPDTDSAPVDAV--EAEAPKAETHTAEATPADAEDESADKATKPTRKRTPARK 1010 Query: 1002 EHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARP 1057 T P +A ++ + T A + A A AAP P Sbjct: 1011 AKATKTEPANEQEPQPANTDASDNNAAKADTAAEQPTAVAPVADAASETPAAPVAP 1066 >UniRef50_A0LJB4 RNAse E n=1 Tax=Syntrophobacter fumaroxidans MPOB RepID=A0LJB4_SYNFM Length = 495 Score = 550 bits (1416), Expect = e-154, Method: Composition-based stats. Identities = 216/496 (43%), Positives = 296/496 (59%), Gaps = 7/496 (1%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 M+INA EE RVAL++GQ L IE+ + NIYKG +T ++PSL+AAFV+YG E Sbjct: 5 MIINAIHPEEFRVALMEGQTLEGFFIETATRGKVVGNIYKGIVTHVQPSLQAAFVNYGME 64 Query: 64 RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLA 123 R+GFLP EI EY+ + R I+DV+ GQEV+VQ+ KEE G+KGA LTT+ISLA Sbjct: 65 RNGFLPFPEIHPEYY--EEDSDERVRIQDVIHSGQEVLVQVVKEELGSKGALLTTYISLA 122 Query: 124 GSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQW 182 G +VLMP + G+SR+IE R LKE L++PE G+I+RTA G++ + Sbjct: 123 GRDVVLMPGQSQ-RGVSRKIEDGGQRERLKELAGDLKVPEEFGVILRTAAEGRTKREVTK 181 Query: 183 DLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQ 242 D + +K WE I+K + PAP LI++E ++ VR RDY +I IL+D+ +VL+ + Sbjct: 182 DFNHLMKIWEEIRKHVQETPAPALIYKEQDLAVRVIRDYFNPNIKTILVDDREVLKQVKD 241 Query: 243 HIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAI 302 I + P ++ Y + P+ Y +E QI F+++V L SGG +VID TEAL A+ Sbjct: 242 FIR-IISPRHDRVVRFYKEDGPITGKYNLEEQIAQIFRKKVPLKSGGHLVIDPTEALVAV 300 Query: 303 DINSAR-ATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVEN 361 D+NS R + G +EE F N+EAA EI RQLRLRDLGGLIVIDFIDM RH R VE Sbjct: 301 DVNSGRTNSGEGALEEMVFKVNMEAAAEIPRQLRLRDLGGLIVIDFIDMRDNRHTREVER 360 Query: 362 RLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSL 421 RL+E +++D+A+I + ISRFGLLE+SRQ L ++ S+ CP C G G VR E+ +L Sbjct: 361 RLKEEIKKDKAKITVGRISRFGLLELSRQHLGLNIMRGSYKECPLCQGAGMVRSAETTAL 420 Query: 422 SILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMET 481 LR I ++ V A +A YLLN KR + +E R G I M Sbjct: 421 CYLRKIWLTLSQKKPASVRATFAPEVAHYLLNRKRQELTRLEERY-GTNIQIESLATMLP 479 Query: 482 PHYHVLRVRKGEETPT 497 H+ + + Sbjct: 480 HDGHLEFTARETQEKP 495 >UniRef50_Q2RSE6 RNAse E n=1 Tax=Rhodospirillum rubrum ATCC 11170 RepID=Q2RSE6_RHORT Length = 889 Score = 549 bits (1415), Expect = e-154, Method: Composition-based stats. Identities = 269/806 (33%), Positives = 381/806 (47%), Gaps = 48/806 (5%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 KRMLI+A EE RV ++DG RL + D+E+ +Q K NIY K+ R+EPSL+AAFV+YG Sbjct: 3 KRMLIDANHPEETRVVVLDGTRLDEFDVETSTKKQLKGNIYLAKVVRVEPSLQAAFVEYG 62 Query: 62 AERHGFLPLKEIAREYF------------------------------------------- 78 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFNEIHPDYYQIPVADREKLIAEEALEAAADDDDEADSVETLGGDEAEDSAPA 122 Query: 79 -PANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAG 137 A I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y V MPN R G Sbjct: 123 PRAKSRVSRSYKIQEVIKRRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVFMPNTTRGG 182 Query: 138 GISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKK 196 G+SR+I DR LK + L P+G +I+RTAG +S ++ D + L+ W++I++ Sbjct: 183 GVSRKITSATDRKRLKSIMGELIGPKGSAVILRTAGSERSRAEIRRDHDYLLRTWDSIRQ 242 Query: 197 AAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKI 256 + AP LIH+E ++I RA RD +DI EIL++ A+ + L P + K+ Sbjct: 243 TTLASRAPCLIHEEGSLIKRAIRDIYSRDIEEILVEGDAGYRTAKDFMKMLT-PSHAKKV 301 Query: 257 KLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDI 315 + Y EI PLF YQ+ESQ+++ +L SGG +VI+ TEAL AID+NS R+TR +I Sbjct: 302 QPYKDEIMPLFHRYQVESQMDAMHSPIAQLRSGGYLVINQTEALVAIDVNSGRSTRERNI 361 Query: 316 EETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQ 375 EETA+ TNLEAADEIARQLRLRDL GLIVIDFIDM R VE R+++A+R DRARIQ Sbjct: 362 EETAYKTNLEAADEIARQLRLRDLSGLIVIDFIDMDDPRSNANVERRVKDALRNDRARIQ 421 Query: 376 ISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKEN 435 + IS FGLLEMSRQRL PSL E+S CP C G+G++R ES ++ ILR+IEEE ++ Sbjct: 422 LGRISHFGLLEMSRQRLRPSLMETSFQPCPHCHGSGSLRSVESTAIHILRIIEEEGVRRR 481 Query: 436 TQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEET 495 + EV VP IA Y+LN KR+ + AIE R D + ++ +D + P Y + RV+ E Sbjct: 482 SSEVTVTVPTAIALYILNNKRTVLAAIEARYD-FQVFLLGDDTLIVPDYRMDRVKAEREG 540 Query: 496 PTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAP 555 +A E E + ++ + A + Sbjct: 541 LDALPAAAPPPTAPVAALPAPEVLEDEDEDEGTVEDEAFAEENGQNGADADGQGRKRRRR 600 Query: 556 KAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNN 615 + + S + + + E D P + Sbjct: 601 RRRRRKDQDGVEIEGSSVDDEEGAPEGTADSTEDEGADDEGETGDEAEDTGDELDPADGS 660 Query: 616 RRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAP 675 DR+ + R R R++ + + + E A D+ A Sbjct: 661 LSDRDGQSRRRRRRRGRRGRRDDTGNGLPEPAVPASTADTLPLDDDSIESAEIDDDPTAE 720 Query: 676 RRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSV 735 S D + A A+ E R + R + + + Sbjct: 721 DEIISSTDADSAPAGEDSAAAITDELGREGRRPPRRRRPRRKDRGVETNRAIALDASDAE 780 Query: 736 AEEAVVAPVVEETVAAEPIVQEAPAP 761 A A + A P Sbjct: 781 AGPATAETDLAAFDDAPDAEAPFAEP 806 >UniRef50_C7RBE6 Ribonuclease, Rne/Rng family n=1 Tax=Kangiella koreensis DSM 16069 RepID=C7RBE6_KANKD Length = 951 Score = 549 bits (1414), Expect = e-154, Method: Composition-based stats. Identities = 423/954 (44%), Positives = 559/954 (58%), Gaps = 39/954 (4%) Query: 1 MKRMLINAT-QQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 M+RMLINAT EELRVALVDGQRLYDLDIE G EQKK NIYKGK+TRIEPSLEAAFVD Sbjct: 1 MRRMLINATNHHEELRVALVDGQRLYDLDIELAGREQKKGNIYKGKVTRIEPSLEAAFVD 60 Query: 60 YGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 YGAERHGFLPLKE+AREY N + GRP IK+ L+EGQE+IVQIDKEERGNKGAALTT Sbjct: 61 YGAERHGFLPLKEVAREYMQ-NAPSRGRPTIKEALKEGQEIIVQIDKEERGNKGAALTTS 119 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ISLAGSYLVLMPNNPRAGGISRRIEGD+RTELK+ ++ L +P GMG IVRTAG+GKS E Sbjct: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDERTELKQVMSQLPVPNGMGCIVRTAGIGKSLEE 179 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 +Q+D ++ + W IK+ A +RPAPFLI QES+VI RA RDYLR DIGEI+ID P++ E Sbjct: 180 IQYDFNYLIDTWNGIKQVAGTRPAPFLITQESDVITRAIRDYLRPDIGEIIIDRPEIYER 239 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + + RPDF SK+KLY EIPLF+ YQ+ESQIESAFQREVRLPSGGS+V D TEAL Sbjct: 240 VKSELQ-YQRPDFVSKVKLYRDEIPLFNRYQVESQIESAFQREVRLPSGGSVVFDQTEAL 298 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +IDINSARAT+GGDIEETA +TN+EAA+EIARQLRLRD+GGLIVIDFIDM P R+QR V Sbjct: 299 LSIDINSARATKGGDIEETALHTNVEAAEEIARQLRLRDIGGLIVIDFIDMGPPRNQREV 358 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 E L+++V +DRARIQI ISRFGLLEMSRQRL PSL ESS HVCPRC+G+G +R +SL Sbjct: 359 ERVLKDSVARDRARIQIGRISRFGLLEMSRQRLRPSLEESSQHVCPRCTGSGVIRGTDSL 418 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 +LSILRL+E+EA+KE+T EV A+VPV +A++LLNEKR + IE RQ VR V+VPN + Sbjct: 419 ALSILRLMEDEAMKESTAEVQAVVPVEVATFLLNEKRRKIEQIEKRQ-KVRLVVVPNPYL 477 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPP 539 ETPHY VLRV+ GE SY L E + S ++ A Sbjct: 478 ETPHYEVLRVKAGETLEDSSYSLIGDAPEIELVRSSKQPAPV------------------ 519 Query: 540 APTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAE 599 + V +P AP+ +PGL +R + +LF E+ K ++ + Sbjct: 520 --SDQPALKGVKPTSPPPAPSKAVKKKKPGLFARLW---TSLFGDDEDKKKKDKQSKNNR 574 Query: 600 AKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQ 659 K +R R R ++ N++ +++ + +E+ + QQ+T + +Q Sbjct: 575 GKYDRNTRGRNTRHQGKKRTNQKGRNQTQAQNKNQPQEQRDGKDNKVQQKTGGRPQKKQN 634 Query: 660 AEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPR 719 + +Q P+ E+ + +++ ++ K ++ E E + + Sbjct: 635 DKPQR------KQTGPKHEQKPEQKQEQQNVVEQPKTKRPPRKTRAERMAEAKQPQQPEQ 688 Query: 720 RKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPE 779 +Q Q+ + +Q+ A ++ A E V+ P + + P Q + Sbjct: 689 GQQPAAKQEQQPQQAKKPSVRSA--IKGKKAQEDSVEAKPVAKKDKAGTDKPTKGQDQTK 746 Query: 780 QQEENNADNRDNGG---MPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPE 836 +E ++ + + + R + + +DE+ A + Sbjct: 747 TAKERAPKSKAQAEDIMVYKAHKSLERSVSDVMGYSKDKKDEKPEVIKATQQAANDAQVK 806 Query: 837 LASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVV 896 A + + + + Q+E V + V + P V + + Sbjct: 807 QAPESASPAKAETSTERHEPQATQTQDES-VATKLDAETVEPFVNPEVKSEPKTAASTKT 865 Query: 897 EAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEP 950 E P + AE E V T A E AV + A+ +P Sbjct: 866 EEPAKEAEQAKEPVAKTEVAKKPAKPHEATHASAPMAKAVNHDSVVSADFAPKP 919 Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 65/597 (10%), Positives = 155/597 (25%), Gaps = 10/597 (1%) Query: 456 RSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSE 515 + +V R R +M + + S Sbjct: 363 KDSVARDRARIQIGRISRFGLLEMSRQRLRPSLEESSQHVCPRCTGSGVIRGTDSLALSI 422 Query: 516 EEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFF 575 E + ++ A+ V A + K P L + + Sbjct: 423 LRLMEDEAMKESTAEVQAVVPVEVATFLLNEKRRKIEQIEKRQKVRLVVVPNPYLETPHY 482 Query: 576 GALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDN 635 L+ E E + R + P + + + + S Sbjct: 483 EVLRVKAGETLEDSSYSLIGDAPEIELVRSSKQPAPVSDQPALKGVKPTSPP--PAPSKA 540 Query: 636 REENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAK 695 ++ + + + ++ + + + R R+ R KR Q+ Sbjct: 541 VKKKKPGLFARLWTSLFGDDEDKKKKDKQSKNNRGKYDRNTRGRNTRHQGKKRTNQKGRN 600 Query: 696 ALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIV 755 + ++ + +++ + VQ + R ++ Q E+ + +V Sbjct: 601 QTQAQNKNQPQEQRDGKDNKVQQKTGGRPQKKQNDKPQRKQTGPKHEQKPEQKQEQQNVV 660 Query: 756 QEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRY 815 ++ R + P+Q E+ P+++++ + G++ + Sbjct: 661 EQPKTKRPPRKTRAERMAEAKQPQQPEQGQQPAAKQEQQPQQAKKPSVRSAIKGKKAQED 720 Query: 816 RDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVP 875 E P VA + ++ + + + E++ V + Sbjct: 721 SVEAKP--------VAKKDKAGTDKPTKGQDQTKTAKERAPKSKAQAEDIMVYKAHKSLE 772 Query: 876 VAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVA 935 + + S +E V++A Q A A + + + Sbjct: 773 RSVSDVMGYSKDKKDEKPEVIKATQQAANDAQVKQAPESASPAKAETSTERHEPQATQTQ 832 Query: 936 VAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAV 995 + VEP E A EP A+ A VA+ + Sbjct: 833 DESVATKLDAETVEPFVNPEVKSEPKTAASTKTEEPAKEAEQAKEPVAKTEVAKKPAKPH 892 Query: 996 EPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASA 1052 E + ++ P+ + S+ T + ++ S+ Sbjct: 893 EATHASAPMAKAVNHDSVVSADFAPKPYQFSETDVITTDIKDTSDKHSNSPAAKTSS 949 Score = 61.9 bits (148), Expect = 1e-07, Method: Composition-based stats. Identities = 43/468 (9%), Positives = 103/468 (22%), Gaps = 6/468 (1%) Query: 596 PKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRE 655 K + + + + E+ E + E Sbjct: 427 EDEAMKESTAEVQAVVPVEVATFLLNEKRRKIEQIEKRQKVRLVVVPNPYLETPHYEVLR 486 Query: 656 SRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRP 715 + + + + + + Q K + ++ ++ +P Sbjct: 487 VKAGETLEDSSYSLIGDAPEIELVRSSKQPAPVSDQPALKGVKPTSPPPAPSKAVKKKKP 546 Query: 716 VQPRRK-----QRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPL 770 R ++K + +QS + + Sbjct: 547 GLFARLWTSLFGDDEDKKKKDKQSKNNRGKYDRNTRGRNTRHQGKKRTNQKGRNQTQAQN 606 Query: 771 PVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTV 830 Q + ++ +++ + R ++ + + P T Sbjct: 607 KNQPQEQRDGKDNKVQQKTGGRPQKKQNDKPQRKQTGPKHEQKPEQKQEQQNVVEQPKTK 666 Query: 831 ACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVE 890 A + P Q Q ++EQ+ + + S Sbjct: 667 RPPRKTRAERMAEAKQPQQPEQGQQPAAKQEQQPQQAKKPSVRSAIKGKKAQEDSVEAKP 726 Query: 891 EVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEP 950 + + Q + + A E V + Sbjct: 727 VAKKDKAGTDKPTKGQDQTKTAKERAPKSKAQAEDIMVYKAHKSLERSVSDVMGYSKDKK 786 Query: 951 QEETADIEEVVETA-EVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAP 1009 E+ I+ + A + V + A PA + E + + V + + T Sbjct: 787 DEKPEVIKATQQAANDAQVKQAPESASPAKAETSTERHEPQATQTQDESVATKLDAETVE 846 Query: 1010 MTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARP 1057 P + P+ + + P E T A P Sbjct: 847 PFVNPEVKSEPKTAASTKTEEPAKEAEQAKEPVAKTEVAKKPAKPHEA 894 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 51/454 (11%), Positives = 122/454 (26%), Gaps = 34/454 (7%) Query: 640 RRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNV 699 + + + A + +Q +R++ R + + Sbjct: 427 EDEAMKESTAEVQAVVPVEVATFLLNEKRRKIEQIEKRQKVRLVVVPNPYLETPHYEVLR 486 Query: 700 EEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAP 759 + + + P + + +++ V P ++ + ++ P Sbjct: 487 VKAGETLEDSSYSLIGDAPEIELVRSSKQPAPVSDQPALKGVKPTSPPPAPSKAVKKKKP 546 Query: 760 APRTEL------VKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRR 813 L + + + + + + R + +R+ + R Q + Sbjct: 547 GLFARLWTSLFGDDEDKKKKDKQSKNNRGKYDRNTRGRNTRHQGKKRTNQKGRNQTQAQN 606 Query: 814 RYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTE 873 + + + + + P+ Q EQ+++++ V+ T+ Sbjct: 607 KNQPQEQRDGKDNKVQQKTGGRPQKKQNDKPQRKQTGPKHEQKPEQKQEQQNVVEQPKTK 666 Query: 874 VPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESD 933 P ++ + + P E QP+ + Q + Sbjct: 667 RPPRKTRAERMAEAKQPQQPEQGQQPAAKQEQQPQQAKKPSVRSAIKGKKAQEDSVEAKP 726 Query: 934 VAVAQEVAEQAEPVVEPQEETADIEEVVETAEVV-------------------------- 967 VA + + Q +TA A+ Sbjct: 727 VAKKDKAGTDKPTKGQDQTKTAKERAPKSKAQAEDIMVYKAHKSLERSVSDVMGYSKDKK 786 Query: 968 -VAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHS 1026 + A A A+V E+ + + E + E + A T+ + +A Sbjct: 787 DEKPEVIKATQQAANDAQVKQAPESASPAKAETSTERHEPQATQTQDESVATKLDAETVE 846 Query: 1027 DWQRPTFAFEGKGAAGGHTATHHASAAPARPQPV 1060 + P E K AA T A A+ +PV Sbjct: 847 PFVNPEVKSEPKTAASTKTEEPAKEAEQAK-EPV 879 >UniRef50_Q2SK60 Ribonucleases G and E n=3 Tax=Gammaproteobacteria RepID=Q2SK60_HAHCH Length = 1056 Score = 549 bits (1413), Expect = e-154, Method: Composition-based stats. Identities = 411/1060 (38%), Positives = 568/1060 (53%), Gaps = 24/1060 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EELRVALVDGQ+LYDLDIES EQKK+NIYKGKITRIEPSLEAAFVD+ Sbjct: 1 MKRMLINATQPEELRVALVDGQKLYDLDIESGTREQKKSNIYKGKITRIEPSLEAAFVDF 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEI+REYF + G+ NIKD+L+EGQE+I+Q+DKEERGNKGAALTTFI Sbjct: 61 GAERHGFLPLKEISREYFKSQPQKGGKMNIKDLLQEGQEIIIQVDKEERGNKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPRAGGISRRIEGDDR +LK+A++ L +P+ MGLI+RTAGVG+S++ L Sbjct: 121 SLAGRYLVLMPNNPRAGGISRRIEGDDRDQLKDAMSGLTVPKDMGLIIRTAGVGRSSKEL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q DL + L+ W++I+ A++S+PAPFLI+QESNV++RA RDYLRQDIGE+LID+P+V + A Sbjct: 181 QRDLDYLLQFWDSIRHASDSKPAPFLIYQESNVVIRATRDYLRQDIGEVLIDHPQVHQDA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + A+ P+F ++IKLY +IPLF+ YQIESQIE+AFQREV+LPSGGSIVID TEAL Sbjct: 241 LNFVKAV-MPNFENRIKLYQDDIPLFNRYQIESQIETAFQREVKLPSGGSIVIDPTEALV 299 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSARAT+GGDIEETA TNLEAADEIARQLRLRD+GGLIVIDFIDMTP ++QR VE Sbjct: 300 SIDINSARATKGGDIEETALQTNLEAADEIARQLRLRDIGGLIVIDFIDMTPNKNQREVE 359 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NRL+EA+ DRAR+QI ISRFGLLEMSRQRL PSLGE+ + +CPRC G G++R ESL+ Sbjct: 360 NRLKEALELDRARVQIGKISRFGLLEMSRQRLRPSLGETRNEMCPRCKGQGSIRGVESLA 419 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LS++RLIEEEA KE T EV AI P+ +A+YLLNEKR + + R GV+ ++VPN M+ Sbjct: 420 LSVMRLIEEEAFKERTAEVRAICPISVATYLLNEKRENLAKTQKRH-GVKVIVVPNSHMD 478 Query: 481 TPHYHVLRVRKGEETPTL-SYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPP 539 TPH+ V R+R + SY + EE + S ++ + PP Sbjct: 479 TPHFEVQRIRDDNANVSEISYNVRPEMEEKNPVESLLHKEVVRQEAAVKTIVPSSTPTPP 538 Query: 540 APT-------------------PAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKA 580 + VA +P+ + A + + R G Sbjct: 539 SEEVGLLKRLRQKVSKMFSGEKKDSDLKITVAESPQTSQDKDAGRRKVKVRDRQDGQRDN 598 Query: 581 LFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENR 640 G + + D R R+N R D + R R + D++ + R Sbjct: 599 QRQGDSRQAESRDGGQDNRRGNRGRNDDRNQRRNERNDGQKDRRQRDRDSSKGDSQRDQR 658 Query: 641 RNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVE 700 A+ + +S +++ + R++R R++ + Q + + Sbjct: 659 GRNESAKADSGSQEKSEFNRPRRDRSSGKPVPRPQRQDRPERQDKPEDQEKAVEEVAERR 718 Query: 701 EQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPA 760 + E + ++ + + E + AP E EP Q A Sbjct: 719 ALTAAAASAAEEPAKSEIAKEVWNKSVEAIAESESTDNTRQAPPKAEEKGVEPAQQTAKQ 778 Query: 761 PRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERY 820 P + P + ++ + + ++++ RR D Sbjct: 779 PHQPSEQSKAPQERASEQSAKQSDADSRQRKQDDAEANQQNAGEDGQEKSARRARADNDP 838 Query: 821 PTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAI 880 ++ P A + + K + Q V + + AA Sbjct: 839 RNKARRPKREAAEAKSEEAPK-ESQLERSVAQAKANAPAMGNTSVESKNKEDKKEGRAAK 897 Query: 881 EPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEV 940 + P E + P + + +++P + + Sbjct: 898 ASAIEQPKKEATPEAKDKPDTAPATDKGATKAAPEPTVEKKPSDKPAATAAQEEEEPKRA 957 Query: 941 AEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVT 1000 V + + ++ + + + + +P E E + + Sbjct: 958 FNDPREV-RKRIQAQKVQAGNDASSALAPQQIAAPKPPEAATIEPKMEAKEPEPKKAPAA 1016 Query: 1001 VEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGA 1040 + P AP+ A ++ + + + A Sbjct: 1017 EKPREEVEPPKSAPSAPEATVADVKAEDKPSSQDSKASQA 1056 >UniRef50_Q2P196 Ribonuclease E n=28 Tax=Proteobacteria RepID=Q2P196_XANOM Length = 1240 Score = 548 bits (1412), Expect = e-154, Method: Composition-based stats. Identities = 414/1076 (38%), Positives = 554/1076 (51%), Gaps = 31/1076 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EELRVA+VDGQ LYD+DIE P EQKK+NIYKG+ITR+EPSLEAAFVDY Sbjct: 1 MKRMLINATQAEELRVAIVDGQTLYDIDIEQPSKEQKKSNIYKGRITRLEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEI+R+YF A H + I+++LREGQE++VQ+DKEERGNKGAALTTFI Sbjct: 61 GAERHGFLPLKEISRDYFQAGVD-HNKSTIRELLREGQEIVVQVDKEERGNKGAALTTFI 119 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG Y+VLMPN+P AGG+SRRIEG+DR LKEAL L++P+ MG+I+RTAGVG+ AE L Sbjct: 120 SLAGRYMVLMPNSPSAGGVSRRIEGEDRAALKEALDKLDIPDDMGVIIRTAGVGRDAEEL 179 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDL + L+ W+AI +AA S+PA FLI+QES +I+RA RDYLR D+GEIL+D P++ A Sbjct: 180 QWDLDYLLQTWKAIAEAALSKPAAFLIYQESRLIIRALRDYLRADVGEILVDTPELYADA 239 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++ + + P K+K YT +IPLF+ +QIESQIE A++R VRLPSGGSIV+D TEALT Sbjct: 240 QEFMKQV-MPQSLRKLKHYTDDIPLFNRFQIESQIEGAYERNVRLPSGGSIVVDQTEALT 298 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 A+D+NS+RAT+G DIEETAF TNLEAA+E+ARQLRLRDLGGL+VIDFIDM +HQR VE Sbjct: 299 AVDVNSSRATKGSDIEETAFQTNLEAAEEVARQLRLRDLGGLVVIDFIDMASSKHQREVE 358 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N+L+ A++ DRAR+Q+ ISRFGL+EMSRQRL PSLGESS VCPRC G G +R ESLS Sbjct: 359 NKLQNALKYDRARVQLGRISRFGLMEMSRQRLRPSLGESSQIVCPRCDGHGRMRSVESLS 418 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSI+R+ EE A+KENT +V PV IA+YLLNEKRSA+ IE R + +IV ++Q+ Sbjct: 419 LSIIRVAEEHAMKENTGQVLVQAPVEIANYLLNEKRSALREIEQRHES-PIIIVADEQLH 477 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPHY V R+R+ E P + + + A A+ + P+ Sbjct: 478 TPHYEVTRLRENELG-----EDSGKPSYQRGTPRKLPVHALTKAQLNIPAPPAVTSIKPS 532 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 AP AAPA P ++ G LK +F G E P + P+ Sbjct: 533 QPAPVREETPAPVAPVAAPAPVVTVPIPAPVTGVVGWLKRIFGGVEPLAPAPESIPRPRQ 592 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 + R R R + RD R+ G+ R ++ + + + + Sbjct: 593 NDAGRNHR-NERGERGGQRRDGRDARNGGHSGNQQRGNGNGANKERRDERRQPASGQGAQ 651 Query: 661 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR 720 + + A + PR E + +QAQQ+ + T ++ + + Sbjct: 652 NGAQAQQQAQTPKPPRNEAQSPKQQQPQQAQQQKPKPQNQTPRPPRTPAQQDGAQAERQP 711 Query: 721 KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ 780 + + ++ + Q+V A +A A A A V T Sbjct: 712 RPARQDEGMAAAQTVTSTAAMATTSSVVAAITDAAAPATAQTNANEAAQAHAVDVTVSAS 771 Query: 781 QEENNADNR------------------DNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPT 822 + AD + R R V Sbjct: 772 TADPGADASVAAPAQDAAGDDAANGEGGSRRRRGRRGGRRRRRGVGANGGEGGASVDGLE 831 Query: 823 QSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEP 882 + + G + + + ++ P V P A Sbjct: 832 GDDLDGDADNDLDSDSEGDAAAAQAHASAAPRAGQPEFDFDDDAPAPTVRAKPEPTAQAA 891 Query: 883 VVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAA---AVTEQPQVITESDVAVAQE 939 PV +E A + P + A A + + A Sbjct: 892 AKPRPVPKERAEPQVGNDTSSTTAPVSNTVPASQPPVATPVAKADTNHERPAAPTVAADA 951 Query: 940 VAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEV 999 A+ A AD+ + + APV A V A Sbjct: 952 PAKPAPAATASTAVNADVAATQAVKQRPAPVAQHAPAAPAPVAAPAPVASTPVPAGAAVA 1011 Query: 1000 TVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFE-GKGAAGGHTATHHASAAP 1054 V +TAP+ AP +P + T G +A + +AAP Sbjct: 1012 PVAETASTAPVATPSAPASTVASPVSNVAATSTQHQPLGSASARAAASDTDKAAAP 1067 Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 60/586 (10%), Positives = 118/586 (20%), Gaps = 6/586 (1%) Query: 478 QMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 + G + + EA + ++ +++ +P T P Sbjct: 639 DERRQPASGQGAQNGAQAQQQAQTPKPPRNEAQSPKQQQPQQAQQQKPKPQNQTPRPPRT 698 Query: 538 PPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPK 597 P A+ A ++ + A+ Sbjct: 699 PAQQDGAQAERQPRPARQDEGMAAAQTVTSTAAMATTSSVVAAITDAAAPATAQTNANEA 758 Query: 598 AEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESR 657 A+A + + ++ +RR R + + Sbjct: 759 AQAHAVDVTVSASTADPGADASVAAPAQDAAGDDAANGEGGSRRRRGRRGGRRRRRGVGA 818 Query: 658 QQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQ 717 E + + +D + A + ++ Q + P Sbjct: 819 NGGEGGASVDGLEGDDLDGDADNDLDSDSEGDAAAAQAHASAAPRAGQPEFDFDDDAPAP 878 Query: 718 PRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTA 777 R + + + + + P V ++ P ++ A T Sbjct: 879 TVRAKPEPTAQAAAKPRPVPKERAEPQVGNDTSSTTAPVSNTVPASQPPVATPVAKADTN 938 Query: 778 PEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEL 837 E+ + S + + Q A+P Sbjct: 939 HERPAAPTVAADAPAKPAPAATASTAVNADVAATQAVKQRPAPVAQHAPAAPAPVAAPAP 998 Query: 838 ASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVE 897 + V P V A P+ A Sbjct: 999 VASTPVPAGAAVAPVAETASTAPVATPSAPASTVASPVSNVAATSTQHQPLGSASARAAA 1058 Query: 898 APVQVAEPQPEVVETTHPEVIAAAVTE---QPQVITESDVAVAQEVAEQAEPVVEPQEET 954 + A + A P T A P + + T Sbjct: 1059 SDTDKAAAPNADRQQRAAAADVATPATTQAAPVQTTPVKQTADLSAPVAAMPAAQAEVVT 1118 Query: 955 ADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAP---MT 1011 A A + V + V A A+ V V +P T Sbjct: 1119 ATSPHAEPPAAQAPSSEVAVTATSTLVQASPTADATPVRKRYAPVQTTMLDTLSPNDAAT 1178 Query: 1012 RAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARP 1057 APA P + + AP+ Sbjct: 1179 SAPAASEHPAPAAAAQEAVAVAVAVADKPKPTVVVSEVKPVAPSTE 1224 >UniRef50_Q1YTQ8 Ribonuclease E n=1 Tax=gamma proteobacterium HTCC2207 RepID=Q1YTQ8_9GAMM Length = 1008 Score = 546 bits (1405), Expect = e-153, Method: Composition-based stats. Identities = 403/1017 (39%), Positives = 544/1017 (53%), Gaps = 10/1017 (0%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINA+ EE+RVA+VDGQ+LYDLDIE+ EQKKANIYKGKITR+EPSLEAAFVDY Sbjct: 1 MKRMLINASHTEEVRVAMVDGQKLYDLDIENRTREQKKANIYKGKITRVEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GA+RHGFLPLKEI+REYF S GR NIKD +REGQE+ VQ++KEERG+KGAALTTFI Sbjct: 61 GADRHGFLPLKEISREYFKGKSSDGGRVNIKDAIREGQEIFVQVEKEERGSKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPRAGGISRRIEG++R +L+EA+ L++PEGMG IVRTAG+G++ E L Sbjct: 121 SLAGRYLVLMPNNPRAGGISRRIEGEERADLREAMRGLDIPEGMGAIVRTAGIGRATEEL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDL + L+ W I+ AE AP + QESNVIVRA RDYLRQD+GE+++D+ LA Sbjct: 181 QWDLDYLLQLWNTIEAEAEGAKAPHFLFQESNVIVRAIRDYLRQDVGEVIVDSQDAYNLA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 I + PDF++K+K Y +IPLF+ YQIE+QIE+AF+REV LPSGGSIVID TEA+ Sbjct: 241 AAFIGTV-MPDFTNKVKFYQEQIPLFNRYQIENQIETAFRREVSLPSGGSIVIDITEAMV 299 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSARAT+GGDIEETAFNTN EAA+E+ARQLRLRD+GGLIVIDFIDM RHQ+ VE Sbjct: 300 SIDINSARATKGGDIEETAFNTNKEAAEEVARQLRLRDVGGLIVIDFIDMLNTRHQKEVE 359 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N +REA++ DRAR+Q+ ISRFGLLEMSRQRL PSL E+ +CPRC G GT+R SL+ Sbjct: 360 NTIREALKIDRARVQVGRISRFGLLEMSRQRLRPSLEETMSKICPRCKGQGTIRGTRSLA 419 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSILRLIEEEA KE ++E+ AIVPV +A++LLNEKRS + IE+R + + V++PN QME Sbjct: 420 LSILRLIEEEAQKEFSKEIRAIVPVSVATFLLNEKRSEIADIESR-NKINVVVLPNTQME 478 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPH+ V+R+R ++ + KL E + E++ P P VP Sbjct: 479 TPHFEVVRIRAQDDDDSDGEFSYKLAHELSSKEPEQDLERTSAPL-PISEPAVKTLVPHK 537 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 P AP++ A +PGLL R + ++ S + E+ + Sbjct: 538 P------APIMPEKAAPTAAAAVKTEKPGLLKRIWESIFGGSSTEAKKTEDEKKTRPRGS 591 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 R + R R R+ R EG ++ + + + + R + Sbjct: 592 NSRRGGQNQDSRNRQGNRRPNNRNRNRNRNEGRNDSNRDAEGTETQAKSADKQGQGRGRN 651 Query: 661 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR 720 + + A D ++ S + + + + + R + Sbjct: 652 DQSRPAAKQDTREQKVDSASTATQTADKGPETGEGGELKKRPNDKRRGPRRRRQRQDVPA 711 Query: 721 KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ 780 + ++ A +P VE AA + T P + A + Sbjct: 712 NVTEQLSADIAVETSTVAADSSPSVESKTAAPETAAQVTTDTTAEATETKPARKRPARRR 771 Query: 781 QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG 840 + + + + +P V+ + E P P L A A P+ Sbjct: 772 KPKADVVETGETAETGSTEATPTAPVVADTQDSAAAPEEKPAPKPRALRKAPAKPKKVEA 831 Query: 841 KVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPV 900 + + Q P TE E P + E P Sbjct: 832 DASSSAAASEATAAPEKAEAPQSTEAEAPKPTEAEAPKPTEAEAPKPTKADAPKPAEKPK 891 Query: 901 QVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEV 960 + VE A + + + + + +PV + + TA +E+ Sbjct: 892 APKKAAAV-VEVIEKAAPKAEAKATAKPARAATARASNDPRFKPKPVSDVKVSTARVEKP 950 Query: 961 VETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPE 1017 A A A A + + + +A + P+ Sbjct: 951 AAVALDTSKPAPTAAPKAPVARASNDPRKNRASQATKADSAPSDTGSAKESTEKGPQ 1007 Score = 59.5 bits (142), Expect = 6e-07, Method: Composition-based stats. Identities = 61/607 (10%), Positives = 134/607 (22%), Gaps = 12/607 (1%) Query: 451 LLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAM 510 + N R A+ R R +M + + Sbjct: 358 VENTIREALKIDRARVQVGRISRFGLLEMSRQRLRPSLEETMSKICPRCKGQGTIRGTRS 417 Query: 511 ALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGL 570 S E + ++ + A+ V A +A + Sbjct: 418 LALSILRLIEEEAQKEFSKEIRAIVPVSVATFLLNEKRSEIADIESRNKINVVVLPNTQM 477 Query: 571 LSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDR-RKPRQNNRRDRNERRDTRSER 629 + F ++ +++ E + + + + + Sbjct: 478 ETPHFEVVRIRAQDDDDSDGEFSYKLAHELSSKEPEQDLERTSAPLPISEPAVKTLVPHK 537 Query: 630 TEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQ 689 + + + + ++ + A + + ++ R R N + Sbjct: 538 PAPIMPEKAAPTAAAAVKTEKPGLLKRIWESIFGGSSTEAKKTEDEKKTRPRGSNSRRGG 597 Query: 690 AQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETV 749 Q+++ + R + + + + Sbjct: 598 QNQDSRNRQGNRRPNNRNRNRNRNEGRNDSNRDAEGTETQAKSADKQGQGRGRNDQSRPA 657 Query: 750 AAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSG 809 A + ++ + + + ++ D R R+ + P ++ Sbjct: 658 AKQDTREQKVDSASTATQTADKGPETGEGGELKKRPNDKRRGPRRRRQRQDVPANVTEQL 717 Query: 810 QRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQP 869 S + A+PE A+ + + + Sbjct: 718 SADIAVETSTVAADSSPSVESKTAAPETAAQVTTDTTAEATETKPARKRPARRRKPKADV 777 Query: 870 MVTEVPVAA-AIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQV 928 + T + E +APVV + AP +P P+ E Sbjct: 778 VETGETAETGSTEATPTAPVVADTQDSAAAP--EEKPAPKP-RALRKAPAKPKKVEADAS 834 Query: 929 ITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAE 988 + + + P E E P P Sbjct: 835 SSAAASEATAAPEKAEAPQSTEAEAPKPTEAEAPK-------PTEAEAPKPTKADAPKPA 887 Query: 989 VETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATH 1048 + A + VE AP A A A P F + TA Sbjct: 888 EKPKAPKKAAAVVEVIEKAAPKAEAKATAKPARAATARASNDPRFKPKPVSDVKVSTARV 947 Query: 1049 HASAAPA 1055 AA A Sbjct: 948 EKPAAVA 954 >UniRef50_C4PNX0 Ribonuclease E n=17 Tax=Chlamydiales RepID=C4PNX0_CHLTZ Length = 512 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 167/504 (33%), Positives = 280/504 (55%), Gaps = 19/504 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M+ ++ + +E+R A + +L+DL IE Q K NIY+G++T I ++++AF++ Sbjct: 1 MENDILLNIESKEIRYAHLKNGQLFDLIIERKKIRQLKGNIYRGRVTNILRNIQSAFINI 60 Query: 61 GAERHGFLPLKEIAR---------------EYFPANYSAHGRPNIKDVLREGQEVIVQID 105 +GF+ + ++ ++ I+++L+ V+VQ+ Sbjct: 61 DERENGFIHISDVLENSKKFEQMFDIDSDADHAEPQPEETSEAPIEELLKLDSPVLVQVV 120 Query: 106 KEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGM 164 KE G KGA LT+ IS+ G YLVL+PN+P G+SR+IE R +LK+ + S E+P+ M Sbjct: 121 KEPIGTKGARLTSNISIPGRYLVLLPNSPH-RGVSRKIEDPLMRDQLKQLIRSFEMPQNM 179 Query: 165 GLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQ 224 GLI RTA + S E L + L W++I + S P L+++E++++ +A + + Sbjct: 180 GLICRTASISASTETLINEAQNLLNTWQSILEKFYSPDHPSLLYEETDILKKAVMTCVDK 239 Query: 225 DIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVR 284 +LID+ + ++ + PD + KI+ Y +P+F + IE +I+ A +R++ Sbjct: 240 SYKRLLIDDYATYQKCKRLLGKYS-PDTTVKIEYYRDSVPMFERFNIEKEIDRATKRKIW 298 Query: 285 LPSGGSIVIDSTEALTAIDINSARATRGGD-IEETAFNTNLEAADEIARQLRLRDLGGLI 343 L SGG + D TEA+ ID+NS R+T+ + +EET NLEAA+EIARQLRLR++GGL+ Sbjct: 299 LSSGGYLFFDKTEAMHTIDVNSGRSTQLENGVEETLVQINLEAAEEIARQLRLRNIGGLV 358 Query: 344 VIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHV 403 +IDFIDM ++QR V RL+E ++ D AR I +S FGL+EM+RQR SL ++ Sbjct: 359 IIDFIDMKSRKNQRRVLERLKEHMKYDAARCTILSMSEFGLVEMTRQRNRESLMQTLFTT 418 Query: 404 CPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIE 463 CP C+G ++ +ES+ + I R +++ + + +V IA Y+ E+ Sbjct: 419 CPYCNGNAIIKTSESILIEIERDLKKIIKHKEHTNLCLVVHPEIAHYMKQEQDDVELIRL 478 Query: 464 TRQDGVRCVIVPNDQMETPHYHVL 487 +Q + I +D + HY Sbjct: 479 AKQLKAKLQINTSDSIHLNHYQFF 502 >UniRef50_B8FM65 Ribonuclease, Rne/Rng family n=1 Tax=Desulfatibacillum alkenivorans AK-01 RepID=B8FM65_DESAA Length = 529 Score = 542 bits (1396), Expect = e-152, Method: Composition-based stats. Identities = 165/529 (31%), Positives = 262/529 (49%), Gaps = 39/529 (7%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M++ LI E RVALV+ L +L IE G +NIYKG++ R+ P ++AAFVD Sbjct: 1 MEKKLIINDAGFETRVALVEDGALAELYIERTGESDIVSNIYKGRVMRVLPGMQAAFVDI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAH----------------------------------G 86 G ++ F+ + ++ ++ + Sbjct: 61 GLDQAAFIYVDDVVMDFPSDETGSPLIHEDEEDQEVILLDAEDDDDEIEEAARIIRPPRI 120 Query: 87 RPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD 146 RP+I+D++REGQE++VQ+ K G KGA +T+ I++ G +LVLMP G+SRRI Sbjct: 121 RPSIEDMIREGQEIMVQVAKSPIGKKGARVTSRITIPGRFLVLMPTTNHI-GVSRRITDS 179 Query: 147 -DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPF 205 +R LKE L + E G IVRT G E L ++ F + W+ + AP Sbjct: 180 GERNRLKEQLMEARV-EPFGYIVRTVCEGIGPEKLTHEVEFLTRVWKRVVHRYWQCSAPS 238 Query: 206 LIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPL 265 L+HQE + +R+ RD +++ ++ID+ + + + P ++ Y P+ Sbjct: 239 LLHQELSASLRSVRDLFTKEVDRLVIDSERGYREIQDFL-EPNMPGLRDAVQYYDRREPI 297 Query: 266 FSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLE 325 F YQ+E I +++V L SGG IVI+ TEAL +ID+N+ R GD+ ET TNLE Sbjct: 298 FDAYQLEGDISRLGRKKVWLKSGGYIVIEETEALVSIDVNTGRYVGKGDLSETILKTNLE 357 Query: 326 AADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLL 385 A EIA QLRLRD+GG+IVIDFIDM + + V L E +++DR+ + +S GL+ Sbjct: 358 ALKEIAYQLRLRDIGGIIVIDFIDMEKLEDRDKVYQVLVETLKKDRSTTNVLPMSEMGLI 417 Query: 386 EMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPV 445 +M+R+R ++ C C G G V +S+ +I R I ++ + Sbjct: 418 QMTRKRTRENINRQLSEPCAYCEGEGIVLSKKSICHNIYREILRQSYDIQGSRISVKAHP 477 Query: 446 PIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEE 494 IA +LL E+ V ++E R + +I + + + ++ Sbjct: 478 EIARFLLEEENITVLSLEQRIE-TPILIQADPALHIERFEIMEFMDSAP 525 >UniRef50_B5JUW5 Ribonuclease E n=1 Tax=gamma proteobacterium HTCC5015 RepID=B5JUW5_9GAMM Length = 914 Score = 542 bits (1395), Expect = e-152, Method: Composition-based stats. Identities = 370/917 (40%), Positives = 500/917 (54%), Gaps = 8/917 (0%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EELRVA+VDGQ+L +LDIE P EQKKANIYKG ITR+EPSLEAAFVD+ Sbjct: 1 MKRMLINATQPEELRVAIVDGQKLINLDIEVPSREQKKANIYKGVITRVEPSLEAAFVDF 60 Query: 61 GAERHGFLPLKEIAREYFPA--NYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 GAERHGFLP KEI R Y P + +GRPN+KD ++EGQE+I+Q++KEERGNKGAA+TT Sbjct: 61 GAERHGFLPFKEINRRYLPDDIETNDNGRPNVKDGIKEGQELIIQVEKEERGNKGAAITT 120 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAE 178 ISLAG YLV MP++PR+GG+SRRIEG++R +++EA+ + +P+G G+IVRTAGVG+++E Sbjct: 121 NISLAGRYLVAMPHSPRSGGVSRRIEGEERAQVREAMQDMTIPDGTGVIVRTAGVGRTSE 180 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 LQWD + + WEAI+KAAESR PFLI+QESNVI+RA RD+ R DIGEILID + + Sbjct: 181 ELQWDFDYLAQIWEAIEKAAESRQGPFLIYQESNVIIRALRDHYRDDIGEILIDEAGIHK 240 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 A ++ L + K+K Y +PLF+ YQIESQIESAFQREVRLPSGGSIV+D TEA Sbjct: 241 QANDFMS-LAMQNDLRKLKFYEDSVPLFNRYQIESQIESAFQREVRLPSGGSIVVDPTEA 299 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 LT+IDINSARAT+G +I+ETA NTNLEAADEIARQLRLRDLGGL+VIDFIDM +HQR Sbjct: 300 LTSIDINSARATKGSNIDETALNTNLEAADEIARQLRLRDLGGLVVIDFIDMGSNKHQRE 359 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 VENRLR+AVR DRAR+Q + IS+FGLLEMSRQRL PSLGESS VCPRC G GT+R ES Sbjct: 360 VENRLRDAVRIDRARVQTNRISKFGLLEMSRQRLRPSLGESSKEVCPRCEGHGTIRSIES 419 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 L+L++LR++EEEALKENT V A +PV +A+++LNEKR V +E R + + +IVPN Sbjct: 420 LALAVLRIMEEEALKENTGRVIAQLPVDVATFMLNEKRQQVAELENR-NSIDLLIVPNKA 478 Query: 479 METPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVP 538 +ETPHY V RVR ++ + E K P + P P Sbjct: 479 LETPHYVVERVRLSDKEANAKRTSYEQAT-VAEESYVPELRSDKTPVEEPAVQTVAPVAP 537 Query: 539 PAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKA 598 P A Q S+ + + + + Sbjct: 538 PQVEQKPKKKEAAPLGLLARLIQWLFGNQDKRPSKGQKGKQQRNNNRGGGRNNNRGGRNN 597 Query: 599 EAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQ 658 + ++N +R N R + SDN+ +NR+++ + + Sbjct: 598 NRNRNNRNQNNNDKKNKQRSDNRSGGGRQQNKGKSDNKNDNRQSKGNNNSDNGDQNKDNN 657 Query: 659 QAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQP 718 + R R R N + Q + ++ + Sbjct: 658 SQNGNNRNNRGSRGGRGRGGRGRGGNRNNDNRNQNSNRNADNKEQNNGNDANNGPSKNSQ 717 Query: 719 RRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAP 778 R NQ + + A+++ + + + + + Sbjct: 718 ARNSEPKNQDPKKSDNRAQQSDKNSNETNSSRKPRQNDRSG---SSDHQASISTRHSKVT 774 Query: 779 EQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELA 838 + + + A R ++S V+ Y +++ +Q S + A Sbjct: 775 KDDKPSVAKQPQEAEQMRSDQKSISQTGVTNTSVLAYAEKKKASQQQTAKAEQANSGDSA 834 Query: 839 SGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEA 898 + K + + Q + V + ++ E+ Sbjct: 835 NAKPADAKSAPPSKSEKPAAQDTPQAASKPEDKKPVESTTPQSEPKPSTQDKQAQSPTES 894 Query: 899 PVQVAEPQPEVVETTHP 915 + P E P Sbjct: 895 AEPKKDQTPPKGEEKAP 911 >UniRef50_B0VED2 Ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation n=16 Tax=Acinetobacter RepID=B0VED2_ACIBY Length = 1110 Score = 541 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 378/1092 (34%), Positives = 522/1092 (47%), Gaps = 41/1092 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINAT EE+RVAL+ G RLYD D+E+ EQKK+NIYKG +TR+EPSLEA FV+Y Sbjct: 1 MKRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GA R GFL ++EIA YF A NI++++ EG E++VQ++KEERGNKGAAL+TFI Sbjct: 61 GAGRQGFLSMREIANSYFQA--DPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFI 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNP+ GGISR+I G R ELKE LASL +P GM +IVRTAG+G++ E L Sbjct: 119 SLAGRYLVLMPNNPKGGGISRQISGSVREELKEILASLNVPRGMSVIVRTAGIGRTQEEL 178 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q DL L W I+ A S P+P L+HQE+ V+ RA RDYLR D+ EILID+ + A Sbjct: 179 QLDLQHLLDLWAQIQGTASSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEA 238 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + A+ P K+K YT PLF+H+ IESQI++A++REV+LPSGGSIVID TEAL Sbjct: 239 YNFVKAV-MPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSA++TRG D+EETA NTNLEAA+EIARQLRLRD+GGL+VIDFIDMT R+QR VE Sbjct: 298 SIDINSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKERNQRMVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 +LREA + DRARIQ +SRFGL+EMSRQRL PSL E++ +VCPRC GTG VRD SLS Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLS 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSI+R +EE AL+E EV VPV IA++LLNEKR ++ + GVR ++P+ +E Sbjct: 418 LSIMRKVEEIALRERHGEVQVEVPVEIAAFLLNEKRHSLV-YLEQTSGVRVTVLPHPHLE 476 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPHY + G + E E+ + A T A Sbjct: 477 TPHYEIAYNPDGFAPSSYERTEATRSSEKELGYESSEWHLEEADHGHAHVTATASTHAAA 536 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 A A VA A+P A + + + + S EQ Sbjct: 537 QKKANHATQPVAQPSAQKAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNTGAV 596 Query: 601 KPERQQDRRKPRQNNRRDRNER----RDTRSERTEGSDNREENRRNRRQAQQQTAETRES 656 + P + ++ ++++ +++ + + +E Sbjct: 597 SRGQFGQVAVPAVAEVAPVQSNNAYISQSPVKQDVREHVEKDDKSQQQRQNNKKRKHKEQ 656 Query: 657 RQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQET----EQEER 712 R+Q + + + ++ + R +R ++Q +Q+ + + VQ T + +R Sbjct: 657 REQHHQSHEQQHQVHEEVVQLSRQEQRELKRQQKRQQQQDQQHQNNDVQHTENAVPRRDR 716 Query: 713 VRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEP------------------- 753 +P R R + V E V ++ V P Sbjct: 717 NNQQRPNRPNRHRDPSVLNENQNTLVVVDEKQIKVDVIDAPKHDVMNTALIINVDQGQSE 776 Query: 754 ----IVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSG 809 + R E + AP E+ P + P+ R S Sbjct: 777 IVALTPERRHVERVETTSTEVAQEPTPAPVVAEKAAVVETKEEAQPSQEAAQPQIKRASN 836 Query: 810 QR--RRRYRDERYPTQSPMPLTVACASPELASGK--VWIRYPIVRPQDVQVEEQREQEEV 865 RRR + E ++ P P LA IR+ V +E+ Sbjct: 837 DPRMRRRQQREAKHAKAATPSIAPSQIPTLAQHTIGSLIRHVYGEDCTVLIEQFGLVPTF 896 Query: 866 HVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPE--VIAAAVT 923 + A+ + V+A E+ +A + +P E A Sbjct: 897 NRALQKFAEQYASTLVVEVTAETEEKKPVTRDAELPSHKPAEEAEPAPVLPLTPPQAPAP 956 Query: 924 EQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVA 983 E + E V + ++ AE VA P Q Sbjct: 957 RVANDPRERRRLAKLAAEQAFEQVKQQHSAQEEVATPAPVAEETVAAPTAETQATVEPAQ 1016 Query: 984 EVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGG 1043 + ++ V+PE AT P + + + Sbjct: 1017 QPLELNQSTEVVQPEAAPAEEKATEETVAEAPAAKEPAPSKAASKAKAAAEETVAPTEAT 1076 Query: 1044 HTATHHASAAPA 1055 A A Sbjct: 1077 TDAESEDVKADK 1088 >UniRef50_A4A8E4 Ribonuclease E n=5 Tax=unclassified Gammaproteobacteria RepID=A4A8E4_9GAMM Length = 1003 Score = 541 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 390/1011 (38%), Positives = 539/1011 (53%), Gaps = 12/1011 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK+MLINAT EE+RVALVDGQ+LYDLDIE+ QKKANIY GKITR+EPSLEAAFVD+ Sbjct: 1 MKKMLINATHAEEMRVALVDGQKLYDLDIENRTRLQKKANIYVGKITRVEPSLEAAFVDF 60 Query: 61 GAERHGFLPLKEIAREYFPANYS-AHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 GAERHGFL +KEIAREYF N G+ +I+DV++EG +IVQ+DKEERGNKGAALTTF Sbjct: 61 GAERHGFLSVKEIAREYFYRNPKDVDGKFSIRDVVKEGTRLIVQVDKEERGNKGAALTTF 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ISL G Y+VLMPNNPRAGGISRRIEGDDR EL+EAL++L++P+GMG+I+RTAGVG+SAE Sbjct: 121 ISLPGRYMVLMPNNPRAGGISRRIEGDDRAELREALSALDIPDGMGVIIRTAGVGRSAEE 180 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 LQWDL++ L+ WEA+ KA E +P L++QESNVI+RA RDYLR D+ ++LID+P + Sbjct: 181 LQWDLNYLLQLWEAVSKAGEENRSPVLLYQESNVIIRAVRDYLRDDVDQVLIDSPDAFKQ 240 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 A ++ + P + +IKLY IPLF+ +QIESQIE+AFQREVRLPSGGSIVID TEAL Sbjct: 241 AMDFVSMV-MPKYQQRIKLYEDNIPLFNRFQIESQIETAFQREVRLPSGGSIVIDPTEAL 299 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +IDINSARAT+G +IE TA TNLEAADE+ARQLRLRD+GGLIVIDFIDM ++QRAV Sbjct: 300 VSIDINSARATKGANIEATALQTNLEAADEVARQLRLRDMGGLIVIDFIDMLAAKNQRAV 359 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 ENR+R+A+ DRAR+Q+ ISRFGLLEMSRQRL PSLGE+S +CPRC+G G++RD +SL Sbjct: 360 ENRMRDALAIDRARVQVGRISRFGLLEMSRQRLRPSLGETSAIICPRCTGQGSIRDTKSL 419 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 SLSILRL+EEEA+K+ T EV AIVPV +A+YLLNEKR A++ +E+ VR +++PN + Sbjct: 420 SLSILRLLEEEAIKDRTAEVRAIVPVDVAAYLLNEKRVALSEVES-LTRVRVLVIPNPNL 478 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPP 539 ETPH+ V R+R E A + ++ + A P Sbjct: 479 ETPHFEVTRLRDDEVEGDQQTSYKVEIAVPDADSISDSHDHSLPTQEAVVQRIAPTAAPA 538 Query: 540 APTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAE 599 A+ A A AA + L P Sbjct: 539 PTAVADSEATEPASVSGAATSAATTAVAATAAVAAKPGLAQRLWVSFFGDPNANAEEAGA 598 Query: 600 AKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQ 659 + + +R R RN Q Sbjct: 599 EEAGAVTTSDSNTSESADAEGDRPKRTRGRRRRGGQGRNQNRNAEDTDQNADSKDSEAST 658 Query: 660 AEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPR 719 + +A ++ + R +R+++ ++ ++S E+ + Sbjct: 659 DAAEARTGSASDEDGSEKPEDGTRRRRRRRSRGGRRSGPDGQESTGESGVTQSEDSSDSD 718 Query: 720 RKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPE 779 ++ E S ++ V + + E R + V VA+ + Sbjct: 719 EAAAVASEDDNGESSDRDQDVASEHKPRKRPSNQRRGEPRRRRRKPVTETAEAVAEEQTD 778 Query: 780 QQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVA---CASPE 836 Q + ++ + + DE S + A+ E Sbjct: 779 QASTSVVESEAESSVEPVEAIEAVTEVEAVAETASVVDESAVDASLNDAEASNSVAAADE 838 Query: 837 LASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVV 896 +G+ V + V E+ + + + ++AA + + E+ V Sbjct: 839 ALTGEAATATDTVEAAETPVAEEATKPASAGSSIEAAMGLSAATDGQTAIVEAEDSPEAV 898 Query: 897 EAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETAD 956 + +V AA T Q V ++ A + + E+ V +P+ + Sbjct: 899 DDVSEVVADATADTAQAPAPAEPAAATLQ--VDAKAANAPGEGLTEEGRAVNDPRVSPSP 956 Query: 957 IEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHAT 1007 ++E+ +V ++ AAP V +V + + Sbjct: 957 VQELHIETGQIVLF----SETAAPAVEAPDRQVPRASNDPRGPKDAVSAEA 1003 Score = 55.7 bits (132), Expect = 9e-06, Method: Composition-based stats. Identities = 78/606 (12%), Positives = 138/606 (22%), Gaps = 26/606 (4%) Query: 451 LLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAM 510 + N R A+ R R +M + + Sbjct: 359 VENRMRDALAIDRARVQVGRISRFGLLEMSRQRLRPSLGETSAIICPRCTGQGSIRDTKS 418 Query: 511 ALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGL 570 S E + + A+ V A ++ P L Sbjct: 419 LSLSILRLLEEEAIKDRTAEVRAIVPVDVAAYLLNEKRVALSEVESLTRVRVLVIPNPNL 478 Query: 571 LSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERT 630 + F + E + T A D + D+ Sbjct: 479 ETPHFEVTRLRDDEVEGDQQTSYKVEIA-----------------VPDADSISDSHDHSL 521 Query: 631 EGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQA 690 + + E+ + A V+ A +A + ++ Sbjct: 522 PTQEAVVQRIAPTAAPAPTAVADSEATEPASVSGAATSAATTAVAATAAVAAKPGLAQRL 581 Query: 691 QQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVA 750 E+ V + + R +++ + Sbjct: 582 WVSFFGDPNANAEEAGAEEAGAVTTSDSNTSESADAEGDRPKRTRGRRRRGGQGRNQNRN 641 Query: 751 AEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQ 810 AE Q A + +E +A ++ ++ RRSR R + Sbjct: 642 AEDTDQNADSKDSEASTDAAEARTGSASDEDGSEKPEDGTRRRRRRRSRGGRRSGPDGQE 701 Query: 811 RRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPM 870 + S A AS + + + R++ + Sbjct: 702 STGESGVTQSEDSSDSDEAAAVASEDDNGESSDRDQDVA-----SEHKPRKRPSNQRRGE 756 Query: 871 VTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVIT 930 E + + AE E VE AV E V+ Sbjct: 757 PRRRRRKPVTETAEAVAEEQTDQASTSVVESEAESSVEPVEAIEAVTEVEAVAETASVVD 816 Query: 931 ESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVE 990 ES V + AE + V +E E T V AE V + P A + E Sbjct: 817 ESAVDASLNDAEASNSVAA-ADEALTGEAATATDTVEAAETPVAEEATKPASAGSSIEAA 875 Query: 991 TVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHA 1050 + + A A + V E + + AA A Sbjct: 876 MGLSAATDGQTAIVEAEDSPE---AVDDVSEVVADATADTAQAPAPAEPAAATLQVDAKA 932 Query: 1051 SAAPAR 1056 + AP Sbjct: 933 ANAPGE 938 >UniRef50_Q0A8Q8 Ribonuclease E n=8 Tax=Gammaproteobacteria RepID=Q0A8Q8_ALHEH Length = 1073 Score = 541 bits (1392), Expect = e-152, Method: Composition-based stats. Identities = 433/1066 (40%), Positives = 532/1066 (49%), Gaps = 11/1066 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EELRVALVDGQ+LYDLDIE+P EQKKANIYKG ITR+EPSLEAAFV Y Sbjct: 1 MKRMLINATQPEELRVALVDGQQLYDLDIETPAREQKKANIYKGTITRVEPSLEAAFVQY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSA-HGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 GAERHGFLP KEIA Y+ A GRP+I+D +REGQEV+VQ+DKEERG KGAALTT+ Sbjct: 61 GAERHGFLPFKEIAPSYYREGLKADGGRPSIRDAVREGQEVVVQVDKEERGTKGAALTTY 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ISLAG YLVLMPNNPRAGG+SRRIEG DR E++EAL L++PEGMGLIVRTAGVG++ E Sbjct: 121 ISLAGRYLVLMPNNPRAGGVSRRIEGSDRAEIREALRQLDVPEGMGLIVRTAGVGRTVEE 180 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 LQWDL + LK W AI+KAAE+R APFLI+QES+VI+RA RDYLR DIGEILID+P+V E Sbjct: 181 LQWDLDYLLKLWSAIQKAAEARSAPFLIYQESDVIIRALRDYLRSDIGEILIDDPQVFEK 240 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 A + + + P K+K Y +PLF+ YQIESQIESAFQR+VRLPSGG+IVID TEAL Sbjct: 241 AVEFVEQV-MPYNRQKLKYYDDRVPLFTRYQIESQIESAFQRDVRLPSGGAIVIDHTEAL 299 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +IDINSARAT+G DIEETA +TNLEAADEIARQLRLRDLGGLIVIDFIDM P R+QR V Sbjct: 300 ISIDINSARATKGSDIEETALHTNLEAADEIARQLRLRDLGGLIVIDFIDMGPNRNQREV 359 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 ENRLREAV+ DRAR+QI ISRFGLLEMSRQRL SLGES VC RC G GTVR ESL Sbjct: 360 ENRLREAVKADRARVQIGRISRFGLLEMSRQRLRSSLGESHQEVCARCGGQGTVRSVESL 419 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 +LSILR++EEEA+KE T V A +PV +A++LLNEKR +++ IE R V V++PN M Sbjct: 420 ALSILRIVEEEAMKEKTGTVLAQLPVDVATFLLNEKRPSISEIEDRHR-VAVVLIPNRTM 478 Query: 480 ETPHYHVLRVRKGEETPTLS--YMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 ETPHY V R+R +E+ + + H E E E A R Sbjct: 479 ETPHYDVQRLRSDDESTEDPSYRLASEEHPEPSPEWLEREAAPRSEEPVVQRVQPPSAPP 538 Query: 538 PPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPK 597 P AP P P A + A+ L+ F L+ F + Q P Sbjct: 539 PTAPVEESPKEEAPPPQRDAPEGSGASDVGISGLTGLFQRLRGFFGREADNDSAGQEGPV 598 Query: 598 AEAKPERQQDRRKPRQN--NRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRE 655 E P R ++ N R + RT E+ R + E+ Sbjct: 599 GEKAPAASGRRGSDQKGATNGRRGGGSNGGKGGRTRQKARPEDGRSASQPEATGKPESDA 658 Query: 656 SRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRP 715 R E E A + + RR RRR Q ++ ++Q Q E Sbjct: 659 RRDADETAEGAGRSGRSRRGRRGGRRRRRSGSTGGGQPEESAARQDQKGQTPPAAEAADD 718 Query: 716 VQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQ 775 R + + A P E V A+ + Sbjct: 719 APRDRAAGKAEAAAERPREGDRAAAEKPAASEKVKADKPALPTITEEEIQGSATPQLKDW 778 Query: 776 TAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASP 835 Q A + QR E T++ P + Sbjct: 779 PPRGQVATEAASPESAPADDESGTAAGSPKATQAQRPATADTEASDTKADAPASSGETPA 838 Query: 836 ELASGKVWIRYPIVRPQDVQVEEQREQE----EVHVQPMVTEVPVAAAIEPVVSAPVVEE 891 + +G + E+ + + P + P V Sbjct: 839 DQPTGAPPAAGGDGAKAPTAEKAAGEKPGARRKRSKPSVQPGTPPVLPQDIGPDEPSVRS 898 Query: 892 VAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQ 951 + A + + + Sbjct: 899 GRPRISAAAPTEGNEADTAGSADVAPREPTPANTGTDQPPKPAPEPAPAKAPEPAPGSDS 958 Query: 952 EETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMT 1011 E A ++ EV A + A P A E E A Sbjct: 959 EPAAADQDAAPAEEVPNAADDGAAGPQATPWLEHEPESSREAIGAHSAGTPDAPDAQKAP 1018 Query: 1012 RAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARP 1057 A D + T KG + + A P P Sbjct: 1019 ADTADAADTAGDEGGDQTQETDEASRKGGSRRKGPAGESEARPESP 1064 >UniRef50_Q1QX63 Ribonuclease E n=5 Tax=Gammaproteobacteria RepID=Q1QX63_CHRSD Length = 1175 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 436/1062 (41%), Positives = 570/1062 (53%), Gaps = 9/1062 (0%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EELRVALVDGQRLYDLDIES EQKKANIY+G+ITRIEPSLEAAFVD+ Sbjct: 1 MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYRGRITRIEPSLEAAFVDF 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEI+REYF GRPNIK+VL+EGQEVIVQ+DKEERGNKGAALTTFI Sbjct: 61 GAERHGFLPLKEISREYFTKE--PSGRPNIKEVLKEGQEVIVQVDKEERGNKGAALTTFI 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG +LVLMPNNPRAGGISRRIEGDDR +LK+A+ L +P+ MG+IVRTAG+G+S E L Sbjct: 119 SLAGRFLVLMPNNPRAGGISRRIEGDDRAQLKDAMGQLTVPDKMGVIVRTAGIGRSPEEL 178 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWD+ + ++ WEAI + A R APFLI++ESNVI+RA RDYLR DIGE+LID+P+V E A Sbjct: 179 QWDMDYLVQVWEAITEEAGKRSAPFLIYRESNVIIRAMRDYLRHDIGEVLIDSPEVHEEA 238 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 I + P + +KIKLY ++PLFS +QIESQIE+A+QREV+LPSGG++VID TEAL Sbjct: 239 LHFIRQV-MPSYQNKIKLYADDVPLFSRFQIESQIETAYQREVKLPSGGAVVIDHTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSARATRG DIEETA TNLEAADEIARQLRLRD+GGL+VIDFIDMTP ++QR VE Sbjct: 298 SIDINSARATRGSDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMTPAKNQREVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NR+R+A++ DRAR+QI ISRFGL+EMSRQRL PSLGE+S VCPRC+G GT+RD S+S Sbjct: 358 NRVRDALKLDRARVQIGRISRFGLMEMSRQRLRPSLGETSGVVCPRCNGQGTIRDVRSIS 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSI+RLIEEEA+KE + ++ AI+PVP+A+YLLNEKRS +N IE RQ GV+ V++PN M+ Sbjct: 418 LSIMRLIEEEAMKERSSQIRAILPVPVATYLLNEKRSVLNDIEQRQ-GVQVVLLPNPDMD 476 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPHY V R+R + + L E + A K ++ A ++ PA Sbjct: 477 TPHYDVQRLRDDQVSEEDGQRSSFELPTTTELTQEPDPALDKPMQRAEAAVKSVAHNAPA 536 Query: 541 PTPAE--PAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKA 598 PT + A P AA A + PA+ GL SR L L +G + T P++Q +A Sbjct: 537 PTSLQHDTAPPATPTPAPAADAPASTPAESGLFSRLVKGLGKLLNGEDSTSPSKQSNDQA 596 Query: 599 EAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQ 658 + + RQ D++ + + +++RR+ + R Sbjct: 597 QQSGASKTTSEARRQRQGSDQSSTSRSDGDTGSKQRQNDDSRRDAGSGNGRGGNRRRRNG 656 Query: 659 QAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQP 718 + +A +D + R RS R N + A+ ++ Q+T + R Sbjct: 657 EESQDRQASRSDNRDGNRSSRSSRGNGGNGGRNENARGSGGSDKGRQDTRSDSRNDARND 716 Query: 719 RRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAP 778 R + + + + AE Q AP + K P Sbjct: 717 SRSDSRNDGRNATKGGNKPREENKDAKAGKPKAETPSQSAPDKQATSDKQTTPSQDD--- 773 Query: 779 EQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELA 838 + + N R + + V+ Q + + + E S T A+ A Sbjct: 774 APKSDGKPKRTRNNPRQRSRKHAVNPNAVAEQEKLQAQQEAEGATSTGDNTQPQATAAQA 833 Query: 839 SGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEA 898 S + +++E A + + Sbjct: 834 SPEAEPTSTAPSDAPAAAAAPTDEDESSQAAAAKSSQDAKSRNAKSKRSRNASKPARTAS 893 Query: 899 PVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIE 958 A PQ + A + A A A Sbjct: 894 ETADAAPQGKTSADAPETAAEAPSQPREAAAAAQPADSATSEAPATANADTRASAPAPSA 953 Query: 959 EVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEY 1018 + A + AP A++ + + A T E Sbjct: 954 DDASALSEPKAPRDATPSAEAPADETSASDAPRGEVSDSQPASSAAADEATSTGRDTVEQ 1013 Query: 1019 VPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPV 1060 P D A A +S A + + Sbjct: 1014 EAATPVTKDEAATAPATSSADADVDTRQDAASSTATPQDDTL 1055 >UniRef50_D0LZK2 Ribonuclease, Rne/Rng family n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LZK2_HALO1 Length = 543 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 174/525 (33%), Positives = 272/525 (51%), Gaps = 31/525 (5%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 + +L+ + E RV +V L + +ES NIY+G+++R+ P ++AAFVD G Sbjct: 3 ENLLVVNAEGPETRVGVVHEGTLSEYFVESKRDRGIVGNIYRGRVSRVLPGMQAAFVDLG 62 Query: 62 A--ERHGFLPLKEIAREYFPANYSAHGRP------------------------NIKDVLR 95 ER GFL + +I A P I+D+L+ Sbjct: 63 PTVERAGFLYVADILGAADERKLFADEDPDSDDAPEGTAARLARSRKRANANRKIEDLLK 122 Query: 96 EGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEA 154 QEV+VQ+ KE G KGA LT ++SL G Y V MP + G+SRRI + +R L++ Sbjct: 123 ADQEVLVQVVKEPIGLKGARLTGYLSLPGRYNVFMPAVQQV-GVSRRISSEAERRRLRKI 181 Query: 155 LASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVI 214 + S+ G G IVRTA G + ++ D+ + L+ W I++ S P LI+ + +++ Sbjct: 182 VTSVGHKSG-GFIVRTAAEGVVDQEIRDDVDYLLRLWSEIQRRERSMKGPGLIYADLDLV 240 Query: 215 VRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQ 274 +R RD LR D EI+ID+ + + AR+ P +IK Y G P+F HY +E++ Sbjct: 241 LRTIRDLLRADTKEIVIDDEEQYDRARKF-TMAFLPPAVDRIKQYRGRQPIFDHYGVEAE 299 Query: 275 IESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQL 334 + +A R V L SGGS+VID EALTAID+N+ D+EET N+EA E+ARQL Sbjct: 300 LRTALGRRVELKSGGSLVIDQGEALTAIDVNTGSFVGKRDLEETVTKNNIEACREVARQL 359 Query: 335 RLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSP 394 RLR++GG+IVIDF+DM +++ V + L +A+ DR+R ++ IS GL+EM+R+R Sbjct: 360 RLRNIGGIIVIDFVDMDKENNRKKVWDILNQALASDRSRCNLTKISELGLVEMTRKRTRE 419 Query: 395 SLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNE 454 SL + CP CSG+G V+ +++ +LR + + +A L Sbjct: 420 SLNQLLTEACPTCSGSGVVKSTTTVAHEVLREVRRLGSHAEADSIDVECAPVVADLLDKY 479 Query: 455 KRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLS 499 +R ++ +E + + VI N Y V+ + + Sbjct: 480 ERGYLDELEKKFQK-KVVIQSNGGYRPDQYQVMGRGQQTGSERSP 523 >UniRef50_A6GBN9 Ribonuclease G n=1 Tax=Plesiocystis pacifica SIR-1 RepID=A6GBN9_9DELT Length = 507 Score = 533 bits (1373), Expect = e-149, Method: Composition-based stats. Identities = 168/506 (33%), Positives = 260/506 (51%), Gaps = 15/506 (2%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 +++ E RVAL++ L +L IE N+YKGKI R+ P ++AAFVD G + Sbjct: 5 VIVINADGPETRVALIENGILTELFIERERERGIVGNVYKGKILRVLPGMQAAFVDIGED 64 Query: 64 RHGFLPLKEIAREYFPANYSA----------HGRPNIKDVLREGQEVIVQIDKEERGNKG 113 + FL +IA + NI D++ GQE++VQ+ K+ KG Sbjct: 65 KAAFLYAGDIASQKPGEKVDKVDKNGVPKRGGKVSNIADLVHPGQEILVQVVKDPISTKG 124 Query: 114 AALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGV 173 A +TT+ISL G +V MP GISRRI + + L P+G G IVRT Sbjct: 125 ARITTYISLPGRNVVFMPTVSHV-GISRRINSERQRRRLRRLVDEMRPKGSGFIVRTVAR 183 Query: 174 GKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDN 233 S+ ++ + + ++ W IK AP L++++ ++++R RD L D +++D+ Sbjct: 184 HASSAQVRAGMDYLIRLWANIKANERLHRAPVLLYRDLDLMLRVVRDNLSPDYARVIVDD 243 Query: 234 PKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVI 293 E ++ A P+++ +I+L++G +F Y IE +I+ A +R+V L SGGS+V Sbjct: 244 RAAYERLKRF-ADAFLPEYADRIELFSGRQGIFDSYGIELEIDRALERKVELKSGGSLVF 302 Query: 294 DSTEALTAIDINSARATR--GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMT 351 D EALTAID+N+ + G +E+T TNLEAADEIA QLRLR++GGLI+IDFIDM Sbjct: 303 DQGEALTAIDVNTGKFVGSKGKTLEQTITQTNLEAADEIAEQLRLRNVGGLIIIDFIDMD 362 Query: 352 PVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTG 411 ++R V RL++A+R+DRA+ I+ IS GL+EMSR+R SL C C G G Sbjct: 363 RESNRRKVYRRLQDALRRDRAKAHITKISEMGLVEMSRKRTRESLERRLAITCEVCGGKG 422 Query: 412 TVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRC 471 + ++ ILR I E + + +A + +RSA++ R Sbjct: 423 YHKSPSTICYEILRQIRREGEHLAGEVISVTAHPDVAELMNGAERSALDHAVKRVHK-AI 481 Query: 472 VIVPNDQMETPHYHVLRVRKGEETPT 497 + + + + P Sbjct: 482 DVQGRKGFHPEKFEIRGKKARRANPQ 507 >UniRef50_D0L1K6 Ribonuclease, Rne/Rng family n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0L1K6_HALNC Length = 1016 Score = 532 bits (1371), Expect = e-149, Method: Composition-based stats. Identities = 402/1041 (38%), Positives = 532/1041 (51%), Gaps = 31/1041 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EE+RVALVDGQ LYD+DIE+PGHEQKK+N+YK ITRIEPSLEA FV+Y Sbjct: 1 MKRMLINATQAEEIRVALVDGQTLYDIDIETPGHEQKKSNVYKALITRIEPSLEAVFVNY 60 Query: 61 GAERHGFLPLKEIAREYFPAN-YSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 GA+RHGFLP KEIAR YF + GRP IK L+EGQE+IVQ++KEERGNKGAALTTF Sbjct: 61 GADRHGFLPFKEIARSYFDSEAVDDKGRPIIKSALKEGQEIIVQVEKEERGNKGAALTTF 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 +SLAG YLVLMPNNPRAGG+SRRIEGDDR E+K AL+ L +PEGMGLIVRTAGVG+ Sbjct: 121 VSLAGRYLVLMPNNPRAGGVSRRIEGDDRAEIKAALSELVVPEGMGLIVRTAGVGREPAE 180 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 LQ DL + + W+AI K +E+R APFLI+QES++I+RA RDY+R DIGE+LID P + + Sbjct: 181 LQSDLDYLQQVWDAIVKKSEARKAPFLIYQESDLIIRALRDYMRNDIGEVLIDEPNMHQQ 240 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 A + L PD KI+LY PLF+ YQIESQIESA++R V LPSGG +V D EAL Sbjct: 241 ALDFV-NLVSPDSVDKIRLYQDRTPLFTRYQIESQIESAYERNVTLPSGGELVFDVAEAL 299 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 TA+DINS R+T+G DIE+TAFNTNLEAADEIARQLRLRDLGGL+VIDFIDM +HQR V Sbjct: 300 TAVDINSGRSTKGQDIEDTAFNTNLEAADEIARQLRLRDLGGLVVIDFIDMGQPKHQREV 359 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 ENRLR+A++ DRAR+Q+ ISRFGLLEMSRQRLS SL ES+ HVCPRC G G +R ESL Sbjct: 360 ENRLRDALKMDRARVQLGRISRFGLLEMSRQRLSASLEESAQHVCPRCMGQGHIRSVESL 419 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 +LSI+RL+ +E++K+ T V A VPV + +YLLNEKR ++ IE V +++PN + Sbjct: 420 ALSIMRLMIDESMKDQTGRVVAQVPVDVGTYLLNEKRLQLHEIEQNHQ-VEVLVIPNINL 478 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPP 539 ETPH+ + RVR+ + + + + A+A+P E R A P P Sbjct: 479 ETPHFKIERVRRSDLAESPANSRALIEPLAVAVPDLERAPRR-------PAAPVEPIRPV 531 Query: 540 APTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAE 599 + P P PA + A G L + +F G++ E AP+ Sbjct: 532 PQSAPRPKVVASVPDVATEPAASTSAANIGALGLLKRVIGQIFGAGDKRVEAEVAAPRDP 591 Query: 600 AKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQ 659 A+ + + NR N ++ +E E+ RR+ + + E Sbjct: 592 ARKASSNRPPRAKDENRATPNRLPRAATQTSESEARLEDKRRDEGKVEGTKPE------- 644 Query: 660 AEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPR 719 R + E R + + + E + + Sbjct: 645 ---GSSNRRRRSRSRKPAEGQRDAQVNTAASANQPAEAPAVTTDTAEGKGSAKAPEKTTA 701 Query: 720 RKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPE 779 R++ + + A E + + A P L A Sbjct: 702 RQREPRSSEPAVRPIAAHEQSLIDQQLKAPVASPSALPLNVAVKRDPAAALAPNAALGLL 761 Query: 780 QQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELAS 839 + P+ + P + + Sbjct: 762 ADDVIVPALVAAAITPKAEAQIAAPQPEDTAANEVNVAPSAPMVESQAEAPTDTTIAAVT 821 Query: 840 GKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGV---V 896 V P EE + + A E +V+ PV Sbjct: 822 PVVAEPVSAAEPVIHTKEEMPSVAATESPVETSTLIPEAIAEQIVAQPVEATNDSPWSQA 881 Query: 897 EAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETAD 956 A + + + + +V V+E+ + + + EV + A Sbjct: 882 SAILAAKQDEVAAPAASETKVADEPVSEKAPTDVQPNASAVDEVEPPVAQAESIHDSPAM 941 Query: 957 IEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAP 1016 E AE ++ V ++P V E T AV AT + AP Sbjct: 942 ASEHAPVAEAIIESAPVESEPVEAVTEAEQPEATTADAV--------TEATTQVETAPQE 993 Query: 1017 EYVPEAPRHSDWQRPTFAFEG 1037 + PEA +D T E Sbjct: 994 DVHPEAIATTDSAEETVRKEP 1014 Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 60/486 (12%), Positives = 107/486 (22%), Gaps = 2/486 (0%) Query: 578 LKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNRE 637 F + +P P R S R Sbjct: 479 ETPHFKIERVRRSDLAESPANSRALIEPLAVAVPDLERAPRRPAAPVEPIRPVPQSAPRP 538 Query: 638 ENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKAL 697 + + + A + + + R + +R R ++A + Sbjct: 539 KVVASVPDVATEPAASTSAANIGALGLLKRVIGQIFGAGDKRVEAEVAAPRDPARKASSN 598 Query: 698 NVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQE 757 + R+ + + + + + E + Sbjct: 599 RPPRAKDENRATPNRLPRAATQTSESEARLEDKRRDEGKVEGTKPEGSSNRRRRSRSRKP 658 Query: 758 APAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRD 817 A R V + A+ + + P ++ R R S R Sbjct: 659 AEGQRDAQVNTAASANQPAEAPAVTTDTAEGKGSAKAPEKTTARQREPRSSEPAVRPIAA 718 Query: 818 ERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVA 877 + L R P + + + + Sbjct: 719 HEQSLIDQQLKAPVASPSALPLNVAVKRDPAAALAPNAALGLLADDVIVPALVAAAITPK 778 Query: 878 AAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVA 937 A + P V AP T V +P E + Sbjct: 779 AEAQIAAPQPEDTAANEVNVAPSAPMVESQAEAPTDTTIAAVTPVVAEPVSAAEPVIHTK 838 Query: 938 QEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVA--QPAAPVVAEVAAEVETVAAV 995 +E+ A + T E + E E + A+ ++A EV AA Sbjct: 839 EEMPSVAATESPVETSTLIPEAIAEQIVAQPVEATNDSPWSQASAILAAKQDEVAAPAAS 898 Query: 996 EPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPA 1055 E +V E AP P V E + A +AP Sbjct: 899 ETKVADEPVSEKAPTDVQPNASAVDEVEPPVAQAESIHDSPAMASEHAPVAEAIIESAPV 958 Query: 1056 RPQPVE 1061 +PVE Sbjct: 959 ESEPVE 964 >UniRef50_C9KMZ9 Ribonuclease G n=2 Tax=Veillonellaceae RepID=C9KMZ9_9FIRM Length = 480 Score = 532 bits (1370), Expect = e-149, Method: Composition-based stats. Identities = 158/492 (32%), Positives = 259/492 (52%), Gaps = 14/492 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK +++N EE +AL++ L +++E H NIYKG++ + P ++AAFVD Sbjct: 1 MKSIIVNMV-PEETCMALLEDGELQAVEMERSSHSHLVGNIYKGRVQNVLPGMQAAFVDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++ FL + + + + R + GQ + +QI K+ G KG T I Sbjct: 60 GTGKNAFLYIGDGLPHETIESMPQNAR------IHIGQSLPIQIVKDAIGTKGPRATMHI 113 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G +VLMP G+SRRIE + A+A P+GMGLI+RT G+S ++L Sbjct: 114 SLPGRNVVLMPTAAYI-GMSRRIEDEGERARLHAIAERICPKGMGLIIRTVAAGQSEQSL 172 Query: 181 QWDLSFRLKHWEAIKKAAESR-PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 D+ + ++ WE+I + R L+++++++I+R RD DI E++IDN + + Sbjct: 173 AADVRYLVRLWESILARYKMRTKGSALLYRDADLIIRLVRDRFTADIDELVIDNEEAYQR 232 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 R + A P+ +I+ Y + P+F Y IE +IE REV L SGG +VID TEAL Sbjct: 233 VRSLVEA-NSPELVDRIRFYEAKTPIFKAYHIEEEIEKLGAREVELKSGGFLVIDKTEAL 291 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+N+ + ++ +T + TNLEAA EI +Q+RLRD+GG+I++DFIDM + + Sbjct: 292 TVIDVNTGKYVGKTNLGDTVYQTNLEAAAEILKQIRLRDIGGIIIVDFIDMEKESQKEEL 351 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 +RE V+ DR + I I+ GL+E++R++ ++ + CP C G G + E++ Sbjct: 352 LTYMREQVKHDRTKTNIVDITSLGLVEITRKKTRQNIDSIVYSECPICHGRGRIESPETV 411 Query: 420 SLSILRLIEEEALKENTQE-VHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 ++ I R I K + +E V +A L + + + G + Sbjct: 412 AIRISRDIRRMERKSHAREGYEIEVHETVAEELRANQ---LMMNLAAEFGTDIKVTVKPG 468 Query: 479 METPHYHVLRVR 490 M +Y +L+ Sbjct: 469 MHPENYTILQQS 480 >UniRef50_C0VHW5 Ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation n=1 Tax=Acinetobacter sp. ATCC 27244 RepID=C0VHW5_9GAMM Length = 1143 Score = 531 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 381/1123 (33%), Positives = 529/1123 (47%), Gaps = 68/1123 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINAT EE+RVAL+ G RLYD D+E+ EQKK+NIYKG +TR+EPSLEA FV+Y Sbjct: 21 MKRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY 80 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GA+R GFL ++EIA YF A NI++++ EG E++VQ++KEERGNKGAAL+TFI Sbjct: 81 GAQRQGFLSMREIANSYFKA--DPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFI 138 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNP+ GGISR+I G R ELKE LA+L +P GM +IVRTAG+G++ E L Sbjct: 139 SLAGRYLVLMPNNPKGGGISRQISGSVREELKEILATLNIPRGMSVIVRTAGIGRTQEEL 198 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q DL L W I+ +A + P+P L+HQE+ V+ RA RDYLR D+GEILID+ + A Sbjct: 199 QLDLQHLLDLWAQIQSSASTGPSPMLVHQEAGVVTRAIRDYLRDDVGEILIDSEQAYNEA 258 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + A+ P K+K YT PLF+H+ IESQI++A++REV+LPSGGSIVID TEAL Sbjct: 259 YNFVKAV-MPRQLDKLKTYTLNEPLFAHFGIESQIQTAYEREVKLPSGGSIVIDQTEALV 317 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSA++TRG D+EETA NTNLEAA+EIARQLRLRD+GGL+VIDFIDMT R+QR VE Sbjct: 318 SIDINSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVE 377 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 +LREA + DRARIQ +SRFGL+EMSRQRL PSL E++ +VCPRC GTG VRD SLS Sbjct: 378 AKLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLS 437 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSI+R +EE AL+E EV VPV IA++LLNEKR ++ +E + VR ++P+ +E Sbjct: 438 LSIMRKVEEIALRERQGEVQVEVPVEIAAFLLNEKRHSLVYLEQTSN-VRVTVLPHPHLE 496 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFA-ERKRPEQPALATFAMPDVPP 539 TPHY + G + E E+ E A A Sbjct: 497 TPHYQIQYNPAGFAPSSYERTEATRSSEKELGYESSEWHLEDAEHVHAAPAQAQTAAPQK 556 Query: 540 APTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAE 599 + A P A P A+P A + + + + S EQ Sbjct: 557 KTAQPQAAQPKQAQVPAQKSASPCAWLENLFVQKQAQTIDQSRSAQNAAAAIEQLVNGGA 616 Query: 600 AKPER---------QQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQT 650 + + N ++ R + + +R N+ Q +++ Sbjct: 617 VSRGQFGQVNTPVVTETPAPASTTNNAYISQNPVKHEARESFEKDEKTHRPNQNQKKRKH 676 Query: 651 AETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQ-------------EAKAL 697 E RE A + + Q R+E+ + + KRQ ++ +A Sbjct: 677 KEQREQHAHAHEQQNQVHEEVVQLSRQEQRHEQRELKRQQKRQQTQEPQNQQQHHDAAQG 736 Query: 698 NVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIV-- 755 N + ++R R Q LN+ ++ V V + EP+ Sbjct: 737 NESAPVPRRERNQQRPNRPNRHRDQSVLNEAPVVTETAVNPQQVKVDVIDAPRTEPMNTA 796 Query: 756 -----------------QEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRS 798 Q+ P T++ VP V E Sbjct: 797 LVVNIDQGQSEIIALNPQQKTTPATKVEAVPAVVEKAEVTPTAEAEPVVIEQEAETEATQ 856 Query: 799 RRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVA-------------CASPELASGKVWIR 845 + R RRR+ + ++ + + + K+ I Sbjct: 857 TPAKRASNDPRSRRRQRGGQAVAKEASVKIAPSQIPTLGQYTLGSLIRHVYGEDCKILIE 916 Query: 846 Y-PIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAE 904 ++ + +++ EQ + T V + P + + APV Sbjct: 917 QFGLITTFNRALQKFTEQYASTLVVENTVVEEKRPVTRDAELPTQKAMEEAEPAPVLDLT 976 Query: 905 PQPEVVETTHPEVIA--------AAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETAD 956 P + A ++ + + + AV + AE V E Sbjct: 977 PPKASAARVANDPRERRRLAKLAAEQAKEAHLASNATPAVVENTEVAAEEVKETAPLEEP 1036 Query: 957 IEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAP 1016 E E E A AA A ET + T+A Sbjct: 1037 SVEATPVPEQQPLELAATAVEAAETETVTAVVEETQPEPQQPAPKPAKEVVEKATKAEKV 1096 Query: 1017 EYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQP 1059 EA ++ K + P + Sbjct: 1097 TEKAEAVEKTEATEAEEDEAAKIEKEKSSRPRRPRGRPPKKST 1139 >UniRef50_Q0AWI9 RNAse G n=1 Tax=Syntrophomonas wolfei subsp. wolfei str. Goettingen RepID=Q0AWI9_SYNWW Length = 476 Score = 529 bits (1363), Expect = e-148, Method: Composition-based stats. Identities = 152/487 (31%), Positives = 253/487 (51%), Gaps = 15/487 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + +I E RVA+V+ RL ++ G IYKGKI I P L F+D Sbjct: 1 MIKEIIAEVYPWESRVAIVEDGRLAEVFWADQGEN--VGKIYKGKIKDILPGLSCVFIDI 58 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ FL ++ N+ ++L+ GQ+++VQ+ KE KGA +T + Sbjct: 59 GLARNAFLYAGDV------VRVGKKKGLNVYELLKSGQDIMVQVKKEAFSEKGARVTGDL 112 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 S+ G LVL+P ISR+I GD+R + +L PE G+IVRTA + + + Sbjct: 113 SIPGRLLVLLPFQNEV-SISRKITGDERRKHLRSLLEESKPENGGIIVRTACLEAEDQEI 171 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 +L+ LK WE IK+ ++R AP LI+++ +V+ R RDYL ++ I+I+N ++ + Sbjct: 172 IQELNRLLKTWEEIKQRYQNRKAPSLIYEDMDVLERTMRDYLDGNLSRIVINNRRLKDKI 231 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 +I+ + +++ E LF Y +E I+ + +R++ L +GG ++ D TEA+T Sbjct: 232 LDYISG---KKIFNSLRVDYEEGALFEKYNLEKDIKRSLRRKIWLKNGGYLIFDRTEAMT 288 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ID+NS + T + EET F N+EAA EI RQLRLR LGG+I+IDFIDM +Q + Sbjct: 289 VIDVNSGKFTGKDNFEETVFKINMEAAIEIPRQLRLRSLGGIILIDFIDMKEKSNQDELI 348 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 L+ + +D+A +I I+ G LEM+R++ + E C CSG G + + ++L+ Sbjct: 349 KVLKTGLEKDKANTRIIGITGLGFLEMTRKKSRYGVVEFFTDECSNCSGRGHIINLQALA 408 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 R + EN ++ + L ++++ R+ G +++ + + Sbjct: 409 SEAKRKMAHMGYLEN-NQIICKAEPRLLKILKDDEKD--IGYIERRSGKSVLLLSDPDLA 465 Query: 481 TPHYHVL 487 Y + Sbjct: 466 PGEYKIF 472 >UniRef50_B8DIL9 Ribonuclease, Rne/Rng family n=3 Tax=Desulfovibrio RepID=B8DIL9_DESVM Length = 491 Score = 527 bits (1356), Expect = e-147, Method: Composition-based stats. Identities = 189/484 (39%), Positives = 277/484 (57%), Gaps = 14/484 (2%) Query: 3 RMLINATQQEELRVALVDGQ----RLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFV 58 RM I+ E++ VAL + ++ + +E + K NIY+G I ++ +L+AAFV Sbjct: 9 RMFISVLPGEQVEVALAEEGAKENQVKEYYVEMVHQAKTKGNIYRGIINNVDTNLQAAFV 68 Query: 59 DYGAERHGFLPLKEIAREYFPANYSAHGRPN---IKDVLREGQEVIVQIDKEERGNKGAA 115 +YGA+++GFL + E+ EY+ + A ++ VL+ GQEV+VQ+ KE G+KGA Sbjct: 69 NYGADKNGFLQIDEVHPEYYNTPHDATKGKKYPLMQKVLKAGQEVLVQVVKEPTGSKGAF 128 Query: 116 LTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVG 174 LTT++S+ G +LVL P + G+SR++E ++R L+E L L G+G+IVRT G Sbjct: 129 LTTYLSMPGRFLVLTPGREQI-GVSRKVEDDEERGRLREMLEGLNPGPGLGVIVRTVSAG 187 Query: 175 KSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNP 234 S LQ DL F + W+ I+K AP LI++E ++ RA RDYL D+ E+ +D+ Sbjct: 188 TSKTTLQRDLQFLKRLWKDIRKKGTEESAPCLIYKEPDLASRAVRDYLSDDVAEVWVDDE 247 Query: 235 KVLELARQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVI 293 L ++ ++L P S +K+Y + L+ + I+ Q+E + REV LPSGG +V Sbjct: 248 HTATLIEEY-SSLLFPRKGSLVKVYKDQTRTLWERFGIQRQLEQIYSREVTLPSGGRLVF 306 Query: 294 DSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPV 353 D TEAL AIDINS + + + E A TN+EAA+ IA+QL+LRD+GG +VIDFI+M Sbjct: 307 DQTEALMAIDINSGKISGKTNFESMALRTNMEAAETIAQQLKLRDIGGQVVIDFIEMRDR 366 Query: 354 RHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 H R VE LR A++ DRAR + +SRFGLL++ RQR S + CP C G+G Sbjct: 367 NHWREVEKILRNAMKNDRARHDVGKMSRFGLLQVVRQRTGSSALSITMEACPCCKGSGLR 426 Query: 414 RDNESLSLSILRLIEEEALKENTQEVH--AIVPVPIASYLLNEKRSAVNAIETRQDGVRC 471 R+ E SL LR I + V +A +LLN KR + RQ GV Sbjct: 427 RNMEWQSLQALREIHRQLRALPHGTVTFLFETGAEVAMHLLNHKRERLLD-LERQFGVHL 485 Query: 472 VIVP 475 I P Sbjct: 486 DIRP 489 >UniRef50_C0R3W8 Ribonuclease, Rne/Rng family protein n=9 Tax=Wolbachia RepID=C0R3W8_WOLWR Length = 590 Score = 526 bits (1354), Expect = e-147, Method: Composition-based stats. Identities = 198/566 (34%), Positives = 299/566 (52%), Gaps = 55/566 (9%) Query: 2 KRMLI--NATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 KR+L+ N+T E+RVAL ++ + + E +Q + NIY I RIEPSL+A F++ Sbjct: 6 KRLLLIENSTCSNEVRVALSVNNKVVEFEQEFKEKKQLRGNIYVAYIKRIEPSLQAVFIE 65 Query: 60 YGAERHGFLPLKEIAREYFPANYSAH---------------------------------- 85 YG + GFL EI+ +YF Sbjct: 66 YGKNKQGFLSFSEISLDYFNIPEKEKETIFESYSNDDYTEKGNDTIANVSSDSAASKNVN 125 Query: 86 -------------GRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPN 132 + ++DV+ Q+V+VQ+ KEERGNKGA+ TT+I+L G Y V MPN Sbjct: 126 ESGSGFVREVPLYKKYKLQDVISVNQKVLVQLTKEERGNKGASFTTYITLVGRYCVFMPN 185 Query: 133 NPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHW 191 + GG+SRRIE + R +LKE L+S+ LP+ GLIVRT G GK+ + ++ D ++ W Sbjct: 186 SMSKGGVSRRIEDANVRKQLKEILSSINLPKRSGLIVRTVGSGKNKKEIEQDYNYLSSLW 245 Query: 192 EAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPD 251 ++I+K A S P LI+ E++VI+R+ RD+ I E+++ + E RQ+ A Sbjct: 246 QSIQKNAFSVNVPSLIYNEADVIMRSVRDFCSDGI-EVIVSGKEAFEAVRQY-ANNALKG 303 Query: 252 FSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATR 311 + +LY G P+F++Y IE QI + V LPSGGS++I TEA +ID+NS + T Sbjct: 304 SKLRYRLYRGYAPIFTYYGIEDQISELYSNRVELPSGGSLIITLTEAFVSIDVNSGKMTG 363 Query: 312 GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDR 371 IEETA+ TN+EA EI+RQ+ LR L GLIV+DFIDM ++ RAVE+ +++A + D+ Sbjct: 364 EDSIEETAYRTNMEAVPEISRQVNLRGLSGLIVVDFIDMLKYQYCRAVESAIKQAFKDDK 423 Query: 372 ARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEA 431 A++Q S+I+ FGL+ SRQR+ P++ E + C C GTG V+ NE + SILR ++ A Sbjct: 424 AKVQFSYINDFGLMVFSRQRIKPNIQEINTTECLHCKGTGRVKSNEVIVSSILRDLQHIA 483 Query: 432 LKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQD---GVRCVIVPNDQMETPHYHVLR 488 K + + + +++ N KR+ V+ IE + V + Sbjct: 484 NKNRNKSFDLVAHSAVIAHIFNNKRNTVSTIEKEFNITLNVSIDNSLDVNTFVLKQGDDV 543 Query: 489 VRKGEETPTLSYMLPKLHEEAMALPS 514 G + S A S Sbjct: 544 NLNGYKPLQNSGYQVGDSSNEEADNS 569 >UniRef50_UPI0001C430FE cytosolic axial filament protein n=1 Tax=Bacillus pseudofirmus OF4 RepID=UPI0001C430FE Length = 503 Score = 526 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 155/506 (30%), Positives = 265/506 (52%), Gaps = 6/506 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M R + T E R A+V+ ++ +L +E P + N+Y G++ + P ++AAFVD Sbjct: 1 MNRKIYFNTATRERRAAIVENGQVVELLVERPAENRIVGNVYIGRVVNVLPGMQAAFVDI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSA-HGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G E++GFL ++ + + NI + + +GQE++VQ+ KE G KG L+ Sbjct: 61 GREKNGFLYRDDLLSFHLSEEADEVKKQRNITEFVTKGQELLVQVTKEGFGQKGPRLSGV 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 +S+ G Y V MP G+SRR+ ++ E + L E G+I+RT E Sbjct: 121 VSMPGKYTVYMPEGGYV-GVSRRMGTEEERERLRGIGEDLLKENEGMIIRTVCEDAKPEV 179 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 ++ DL F WE++ + + + AP LIHQ S++I + D+ I EI+ID+ + Sbjct: 180 IEQDLHFLRTSWESVWQEGKEKRAPALIHQGSSLIEKMMLDFSLNQIDEIVIDDADDYQT 239 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + +A D K++LY + +FS + I+ +++ A +R++ L +G +++D TEAL Sbjct: 240 LKALLAPYS--DVHEKVRLYHDKENIFSVFGIDKELDKALRRQIWLKNGAYLIVDQTEAL 297 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+N+ + T D+++T TNLEAA EIARQLRLRD G+I+IDFIDM + V Sbjct: 298 TVIDVNTGKFTGKTDLQDTVRKTNLEAAKEIARQLRLRDTSGIIIIDFIDMKREEDREYV 357 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 + ++QDR + + ++ GL+EM+R+++ SL S CP C G+V +E+ Sbjct: 358 LEAFKRGLKQDRTKTNVVGLTGLGLVEMTRKKVRQSLQASLSKACPTCKEQGSVLSDEAQ 417 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 + I RLI E + + + +P +++ L K + G R +++PN M Sbjct: 418 AYKIERLIWEYRG-MDHEAILIELPSAVSAVLAGPKGE-LLKQLEEATGFRILLMPNKHM 475 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKL 505 + + + EE + + + Sbjct: 476 PEEAFAIRFMGDLEEAASQLERVKQK 501 >UniRef50_D1B5Z1 Ribonuclease, Rne/Rng family n=3 Tax=Synergistaceae RepID=D1B5Z1_THEAS Length = 496 Score = 525 bits (1352), Expect = e-147, Method: Composition-based stats. Identities = 156/497 (31%), Positives = 258/497 (51%), Gaps = 24/497 (4%) Query: 2 KRMLINATQQEELRVALVD-GQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 K ++ N + EE RVA++D RL D+ IE QK IYK ++ + P + AAFV+ Sbjct: 5 KTIVANTLESEESRVAVLDPSGRLLDIYIERMWERQKAGEIYKARVDNVLPGMNAAFVNL 64 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+GFL L+++ R G+E++VQ+ K R KGA +T + Sbjct: 65 GDGRNGFLYLEDLGRSP-----------------HPGEEILVQVAKTARKGKGARVTPKL 107 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLVL+P G+S+RIE ++ + + L P+G G+IVRT G + L Sbjct: 108 SLPGRYLVLVPEGKDV-GVSKRIEDEEERQRLKVLGREVRPQGFGIIVRTVAQGCHMDQL 166 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 + D+ + W++I AA PAP L++++ ++ R RD L + E+++DNP+ L+L Sbjct: 167 KSDVEDLMDLWDSICAAASRSPAPCLLYRDRGLLDRVLRDELDHQVAEVVVDNPEELDLV 226 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 R+ + ++ LY G P+F Y +E ++E A +R+V LPSG +VID EALT Sbjct: 227 REMVGRFFSQGKGPEVTLYRGRTPVFEVYGVEREMELALERKVWLPSGAYLVIDQAEALT 286 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ID+N+ + T D++ T TNLEAA+EIARQLRLR +GG++V+DFIDM H++ + Sbjct: 287 VIDVNTGKFTGSKDLKSTILKTNLEAAEEIARQLRLRAIGGIVVVDFIDMDDESHRQILL 346 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 RE ++ DR R ++ ++ GL+E++R+R L CP C G+G V ++ + Sbjct: 347 ETTRELLKGDRQRAKVFGVTSLGLVELTRRRTRGDLKSVMTRGCPMCGGSGLVEREDACA 406 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 + + R + + + + +A + + R ++ + ++ Sbjct: 407 MRLKRAVRKMTGDSPPEALLVAANPQLARHCAEYLLAWEEEFRCR-----ILLREDQSLQ 461 Query: 481 TPHYHVLRVRKGEETPT 497 + V + Sbjct: 462 WGRFKVEHQGALRQAEH 478 >UniRef50_D1BNE2 Ribonuclease, Rne/Rng family n=3 Tax=Veillonella RepID=D1BNE2_VEIPT Length = 475 Score = 522 bits (1345), Expect = e-146, Method: Composition-based stats. Identities = 151/490 (30%), Positives = 245/490 (50%), Gaps = 22/490 (4%) Query: 1 MKRMLINATQQEELRVALV-DGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 M ++L+N +EE+R+A++ + +L D +E ++YKG + + ++AAFVD Sbjct: 1 MHKILVN-VMREEIRMAVIDEEGQLVDFVLERTDDSHMANHMYKGTVKNVLNGMQAAFVD 59 Query: 60 YGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G ++ +L N I L GQ+++VQ+ KEE KGA +T Sbjct: 60 IGGSQNAYL------------NLQQGKEQKILPRLSVGQQILVQVVKEEMLGKGARVTAD 107 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 +SLAG ++VL+P + IS++I + + LA+ + EG G I+RTA SA+ Sbjct: 108 VSLAGRFMVLLPYSE-GMHISKKITDEALRSKLQELAAPYVQEGCGFIIRTAAAKASADE 166 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + D+ + + W+ + K + + ++ +++ R RDY +++ EI++D+ Sbjct: 167 IGRDMEYLWRTWQHVLKRFKVAKSGTDLYSDADFWFRLVRDYAHRNVEEIIVDSDMGESR 226 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + G K+ + P+F IE Q+E R++ LPSGGSI ID TEAL Sbjct: 227 LLDLLGH-GPTSQQIKVTRHRDSTPIFKANHIEPQLEDLISRDINLPSGGSIRIDHTEAL 285 Query: 300 TAIDINSARATRGGD-IEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 T D+NSA T + +E+ AF N EAA EI RQLRLRD+GG+IV+DFIDM HQ+ Sbjct: 286 TVFDVNSAHYTGKSNKLEDLAFTVNKEAAKEICRQLRLRDIGGIIVVDFIDMKDKEHQQE 345 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 + L + D+ + + IS GL+EM+R+R L CP+C GTG + + Sbjct: 346 LLKLLGVQAKLDKMKTVVCGISSLGLVEMTRKRARQGLQTLMFDTCPQCGGTGYMLSGRT 405 Query: 419 LSLSILRLIEEEALKENTQ-EVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 + + I+R I E + + V +A YL + G + IV N Sbjct: 406 VYMQIVRRIRELFKSGRIKTNLEIEVHPEVAQYLTKAVLEDLGESI----GRKISIVVNP 461 Query: 478 QMETPHYHVL 487 Q+ Y ++ Sbjct: 462 QISREGYSLM 471 >UniRef50_C0WDS2 Ribonuclease n=1 Tax=Acidaminococcus sp. D21 RepID=C0WDS2_9FIRM Length = 468 Score = 522 bits (1344), Expect = e-146, Method: Composition-based stats. Identities = 154/491 (31%), Positives = 256/491 (52%), Gaps = 28/491 (5%) Query: 5 LINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAER 64 + + + EE R+ LV +L D +E G NIY+G+++ + P ++AAF+D + Sbjct: 4 IFVSVKPEETRMGLVFDSKLRDFAVERRGEGNLVGNIYRGRVSNVVPGIQAAFIDLNVGK 63 Query: 65 HGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAG 124 +GFL L + +D L EGQ ++VQ+ K+ RG KG +T ++L G Sbjct: 64 NGFLTLHK------------------QDRLTEGQMLLVQVVKDCRGTKGPGVTRNVTLPG 105 Query: 125 SYLVLMPNNPRAGGISRRIE-GDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWD 183 Y+VL P R +SR+I RT L+ + LPEGMG+++RTA +AE ++ D Sbjct: 106 RYIVLEPFGNRI-SLSRKITCKSLRTRLRTLVQK-SLPEGMGVVIRTAAAKAAAEEIEND 163 Query: 184 LSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQH 243 L L W+ + + ++ P L+++E ++ +R RDY+ +D+ +I++D+ + Sbjct: 164 LRQLLASWQVLLRRSKVGRGPQLLYRELDLSIRMIRDYVTKDVQKIIVDDEATYHTVEEL 223 Query: 244 IAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAID 303 + +G + + + Y + LF+HY + +I S R V LP GGS+V D TEA+T ID Sbjct: 224 LQDMGLTEI--RTEWYQEKEDLFTHYGLNEEIASISDRVVPLPGGGSLVFDYTEAMTVID 281 Query: 304 INSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL 363 +NS + G D EET+ TN EAA EIARQLRLRD+GG+IV DFIDM Q + + L Sbjct: 282 VNSGHYSTGSDREETSLATNREAALEIARQLRLRDIGGIIVADFIDMERKEEQEEILDLL 341 Query: 364 REAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSI 423 R DR + ++ ++ L+EM+R + +L + + CP C G+G V E++ + I Sbjct: 342 RREFAMDRMKPRVMGMTALNLVEMTRMKARRNLFGTVYTTCPMCQGSGRVESPETVYVEI 401 Query: 424 LRLIEEEALKEN-TQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETP 482 R + L + + V + ++ R ++ G + +V N + Sbjct: 402 RRRLRSLYLDHAMARSLVLSVHPLVEEWI----RIHGMKDMEQEFGAKIRLVSNPSLAVG 457 Query: 483 HYHVLRVRKGE 493 + +L G+ Sbjct: 458 VFTLLNAPDGD 468 >UniRef50_B8CXZ3 Ribonuclease, Rne/Rng family n=1 Tax=Halothermothrix orenii H 168 RepID=B8CXZ3_HALOH Length = 489 Score = 522 bits (1343), Expect = e-146, Method: Composition-based stats. Identities = 169/490 (34%), Positives = 271/490 (55%), Gaps = 7/490 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M +I + +E R A++ L D+ IE +++ N+Y+ ++ + P ++AAFVD Sbjct: 1 MVNQIIINSGIKEKRAAILMDNVLEDIVIELDSYKKIVGNVYRARVIDVLPGMQAAFVDI 60 Query: 61 GAERHGFLPLKEIAR--EYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 G +++ FL + +I + G+ I+ VL+ GQE++VQ+ KE KGA +T Sbjct: 61 GYDKNAFLHVSDIYPLLDEKQLKLKKEGKLGIQHVLQPGQELMVQVVKEPIYEKGAKVTC 120 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSA 177 ISL G YLVL+P ISR+I+ D+R LK+ + L+ P MGLI+RT K A Sbjct: 121 KISLPGRYLVLLP-GEYRTAISRKIKDFDERDRLKKIVGKLKDP-DMGLIIRTNSRYKKA 178 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 + L+ D S+ + W IK+ + AP LI++ ++++ RDYL +D+ ++LID+ Sbjct: 179 DLLELDYSYLKRTWTQIKENYNNSKAPDLIYEHASLLKTIVRDYLNKDVDKVLIDDESDY 238 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 + + ++ PD ++I LY ++P+F Y IE ++E A ++++ L SGG IVI+ TE Sbjct: 239 RVLLE-LSEKLAPDLKNRINLYNKKMPIFHVYGIEKELERAIRKKIWLDSGGFIVIEQTE 297 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 AL AID+N+ + T + T TNLEAA EIARQLRLRD+GG+I+IDFIDM RHQ+ Sbjct: 298 ALVAIDVNTGKYTGKKNAARTILKTNLEAAREIARQLRLRDIGGIIIIDFIDMKERRHQQ 357 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V + + +DR+ I +++ GLLEM+RQ++ LGE C C G G + Sbjct: 358 EVLETFEKELAKDRSVTSIQGLTKLGLLEMTRQKVREGLGELMQKECSYCRGKGLILSAN 417 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 S++ SI+R I+ + E + S L + + I + GV + P + Sbjct: 418 SVAESIIRNIQLKKASEEFSRAVVECHPLVVSSLKGDNGEVLQKIFKK-TGVSLELKPVN 476 Query: 478 QMETPHYHVL 487 + Y + Sbjct: 477 SLHIEKYRIN 486 >UniRef50_D2RM73 Ribonuclease, Rne/Rng family n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RM73_ACIFE Length = 476 Score = 519 bits (1337), Expect = e-145, Method: Composition-based stats. Identities = 151/503 (30%), Positives = 257/503 (51%), Gaps = 29/503 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + + + + EE R+ V+ +L D +E + N+Y+ ++ + P ++AAFVD Sbjct: 1 MNTIFV-SVRPEETRMGTVEDDQLRDYAVERNSADNLVGNVYRARVCNVVPGIQAAFVDL 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 ++GFL LK+ + L EGQ ++VQ+ K+ RG+KG A+T I Sbjct: 60 NTGKNGFLTLKKG------------------ETLSEGQMLLVQVVKDARGSKGPAVTRDI 101 Query: 121 SLAGSYLVLMPNNPRAGGISRRIE-GDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 +L G Y+VL P R +SR+I R EL++ L LP+ MGL++RTA + Sbjct: 102 TLPGRYVVLEPYGSRV-SLSRKISCKTKRKELRDWAREL-LPDHMGLVLRTAAAHAEEDE 159 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 ++ DL L++W+ + + ++ P L+++E ++ +R RDY+ + I++D K Sbjct: 160 IRADLEQLLRNWDVLVRRSKVGRGPQLLYRELDLAIRLVRDYVTDRVERIIVDEEKTCRR 219 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 ++ + +G P +KLY G+ LF+ Y+++ IES R V LP GG +VID TEA+ Sbjct: 220 LQEMLRDMGLPGIQ--VKLYRGKEDLFTFYRLDEDIESLSDRVVWLPGGGYLVIDCTEAM 277 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+NS + + G D + T+ TN EAA EIARQLRLRD+GG+IV DFIDM Q + Sbjct: 278 TVIDVNSGKFSTGADRDATSMATNREAAREIARQLRLRDIGGIIVADFIDMDREEEQEEI 337 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 L++ D+ + ++ +++ L+EM+R + +L + CP C G+G V E++ Sbjct: 338 LQILKKEFASDKMKPKVIDLTQLNLVEMTRMKARKNLAGILYTTCPLCGGSGRVESPETV 397 Query: 420 SLSILRLIEEEALKEN-TQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 + I R + L+ + + V + S+L R ++ + + Sbjct: 398 YVEIRRRLRSTFLQGKMSHALLLTVHPLVYSWL----RQQGLRDMEQEFHCSLKLASDPS 453 Query: 479 METPHYHVLRVRKGEETPTLSYM 501 +E + +L Sbjct: 454 LEVGVFTLLTADPEGTGREGERQ 476 >UniRef50_A8MHL2 Ribonuclease, Rne/Rng family n=2 Tax=Alkaliphilus RepID=A8MHL2_ALKOO Length = 501 Score = 518 bits (1333), Expect = e-145, Method: Composition-based stats. Identities = 171/498 (34%), Positives = 274/498 (55%), Gaps = 6/498 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M +I E R+A+++ + L +L IE +++ NIYKG++ + P ++AAFVD Sbjct: 1 MN-QIIVDVGISENRLAILEDEELVELYIERRNNKRIVGNIYKGRVVNVLPGMQAAFVDI 59 Query: 61 GAERHGFLPLKE-IAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G E++ FL +K+ + +EYF +IKDV+++GQE+IVQ+ KE +KGA +TT Sbjct: 60 GLEKNCFLYVKDALGQEYFNKKDFVDREISIKDVVKQGQEIIVQVIKEPIADKGARVTTN 119 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 I+L G YLVLMP+ G+SR+I + E +A PE MG+I+RT GKS + Sbjct: 120 ITLPGRYLVLMPDTQYI-GVSRKIGSAEERERLKAEIEALKPENMGVILRTVAEGKSKDD 178 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + D+ F LK W+ I+K + AP LI+++ ++I + RD ++I E +I++ + Sbjct: 179 FREDIKFLLKLWQKIEKEKKLGFAPRLIYKDFDLIDKTIRDTFSKNIHEFIINDENEYKS 238 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 A + L P+ ++ + +F HY+IESQI A +R++ L SGG IVIDSTEAL Sbjct: 239 AMDLV-ELLSPNLKDRLSYFEESHDIFRHYKIESQIHKALERKIWLKSGGYIVIDSTEAL 297 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T +D+N+ + D+E+T TNLEAA EIA+QLRLRD+GG+I+IDFIDM+ ++ V Sbjct: 298 TVVDVNTGKYVGITDLEDTVLKTNLEAAVEIAKQLRLRDIGGIIIIDFIDMSNEEDEQKV 357 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 N L +++ +DR + +I ++ GL+EM+R+++ L C C G+G + + +L Sbjct: 358 LNLLEKSLNKDRTKSKILGMTELGLVEMTRKKVRQKLESVMQKKCHCCDGSGKLLNEYTL 417 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 + + AL + + V V E + V+ IVPN + Sbjct: 418 LQRFEKEMRRIALHTSCEAVIFEVHPTAFKIFEEEFIT--RKEIEGLTKVQSFIVPNPSL 475 Query: 480 ETPHYHVLRVRKGEETPT 497 + E Sbjct: 476 NFDDLKTKAMGSLENVKK 493 >UniRef50_Q0F3G3 Ribonucleases G and E n=1 Tax=Mariprofundus ferrooxydans PV-1 RepID=Q0F3G3_9PROT Length = 727 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 264/758 (34%), Positives = 383/758 (50%), Gaps = 36/758 (4%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 MLINA+ EE RVA+ + L++LDIES K+NIYKGK+T++E SL+AAFV+YGA Sbjct: 1 MLINASHDEESRVAIAEDGYLHELDIESAQKTLTKSNIYKGKVTKVEASLQAAFVEYGAA 60 Query: 64 RHGFLPLKEIAREYFPANYSAHGRPN---IKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 R GFL L EI +Y+ P I+DVL QE++VQ+ KEERGNKGAALTT I Sbjct: 61 RQGFLSLSEIHPDYWKDGVDKSTNPRNISIQDVLAPKQELLVQVVKEERGNKGAALTTQI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVL PN R GGISR++ ++R +KE L+ L++PE MGLI+RTAG ++ EAL Sbjct: 121 SLAGRYLVLSPNTTR-GGISRKLSDEERRSMKEILSQLDVPENMGLIIRTAGKDQTLEAL 179 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q D + + W+ I+ +E+ P P LI+ E ++ RA RD+ D+ EI +DN ++ Sbjct: 180 QRDYQYLRRLWDEIRIKSETTPPPALIYLEGDLATRAIRDHFSDDVDEIWVDNHEIYTHT 239 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + + A+ P +KLY G+IPLF Y IESQ E +RE+RL +GGSIV+D TEALT Sbjct: 240 KAFVHAV-LPGKEKLVKLYRGKIPLFRKYGIESQCEEMHEREIRLRTGGSIVLDPTEALT 298 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +ID+NSARAT+G I++TA NLEAA+EIARQLR+RD+GGLIVIDFIDM +H + VE Sbjct: 299 SIDVNSARATKGKHIDDTALAINLEAAEEIARQLRIRDIGGLIVIDFIDMASRKHGQQVE 358 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 + LR+A + D+ARIQ + ISRFGLLEMSRQRL PS+ ES+ CPRC G G +R +S++ Sbjct: 359 DMLRKACKGDKARIQFARISRFGLLEMSRQRLHPSVRESTTEPCPRCQGRGFIRTVDSMA 418 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 L +L +E+ A + VP YL+N KR + IE + ++ + ++ Sbjct: 419 LQMLTRMEDWAEAGKKPTLVVQVPSDTGEYLMNNKRDNIARIEETYE-IQITLQIRPDLD 477 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 PHY + E ++ E + L PP Sbjct: 478 IPHYRI----------------------------ERQWTENNQQRVEVLEDTNKRVKPPR 509 Query: 541 PTPAEPAAPVVA--PAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKA 598 P V P P A A + G L+ L + K E+ A Sbjct: 510 PNRKLKPMKPVVGIPTPPPELAEKAEEKKKGPLTTLIAMLTGQSRKEKLQKEAEEKAQAE 569 Query: 599 EAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQ 658 + + R R + + + E+ + + + ++ R+ Sbjct: 570 REAQRQSERSRNSRARGEKKSRRKPAAAKTSAPENVAEEKQKTDSNNPNSEKNTPKKPRR 629 Query: 659 QAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQP 718 + + E+ + + + + Sbjct: 630 PRKPRAPKPEGEATVNSATEQQSAEGTTDAPKPKRRRRRRPRRPAGNGEANNNSGQENSA 689 Query: 719 RRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQ 756 ++ + + + A V+ + P + Sbjct: 690 STGNGGTSEPAADKPAASRAPESATTVQAAPPSTPQGE 727 >UniRef50_Q2LU58 Ribonuclease E n=1 Tax=Syntrophus aciditrophicus SB RepID=Q2LU58_SYNAS Length = 630 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 236/633 (37%), Positives = 332/633 (52%), Gaps = 7/633 (1%) Query: 1 MKR-MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 MK MLINA E+ R+A+V+ +L + +I+ E NIYKG + ++E L+AAFV+ Sbjct: 1 MKHIMLINAVHHEQKRMAIVEDGKLVEFNIQMSLREPITGNIYKGIVLKVERGLQAAFVN 60 Query: 60 YGAERHGFLPLKEIAREYFPANYSAHGRPNIKDV-LREGQEVIVQIDKEERGNKGAALTT 118 +G + GFLPL++++ YF A L+ GQEVIVQ+ +E G KGA LTT Sbjct: 61 FGVGKDGFLPLRDVSPAYFTEKKEAGRESAHSRGSLKIGQEVIVQVAREVSGRKGALLTT 120 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIE-GDDRTELKEALASLELPEGMGLIVRTAGVGKSA 177 ++SL G YLVL+PN + GISR+IE +DR LK + +++ EGMG IVRTAG+ ++ Sbjct: 121 YLSLPGRYLVLLPN-KHSSGISRKIEAEEDRRLLKTLVEQIKIDEGMGFIVRTAGINRTK 179 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 + L D L+ W+ I+K AE+ PAP LI+QES+ VR+ RDY +I EIL+D+ + Sbjct: 180 QELSRDYQHLLRLWKEIQKRAETDPAPALIYQESDFGVRSLRDYFTSEIEEILVDDLETY 239 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 R + A+ P IK Y +P+FS Y +E QI +Q V L SGGSIVI TE Sbjct: 240 RKMRAYCKAVA-PRNLRMIKQYKERLPIFSQYNLEEQIREIYQERVELKSGGSIVISPTE 298 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 A+ ID+NS RA+ ++E+TAF TNLEAA+EI RQLRLRDLGGLIVIDFIDMT +H+ Sbjct: 299 AMITIDVNSGRASNKKNVEDTAFKTNLEAAEEIGRQLRLRDLGGLIVIDFIDMTDRKHEA 358 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 VE ++A+ DRARIQ+S IS+FG+LE+SRQ+ ++ E S+ CP CSG+G E Sbjct: 359 EVEKTFKKALTLDRARIQMSRISKFGILELSRQKKHSTIQEISYTTCPFCSGSGIRPSLE 418 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 +LS R IE EA KE + VP IA YLLN+KR+ + IET D + I Sbjct: 419 YTALSAFRKIETEAAKEKANALKISVPYEIADYLLNQKRTDIQRIETLYD-LSIHISGKA 477 Query: 478 QMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 M H + V + T T + + +E A Sbjct: 478 DMTWDHAAISAVARELATETPETAEEEKPSLPVEALRGQELEPAASGNAGESVETASGSG 537 Query: 538 PPAP-TPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAP 596 P PA A + + + E + Sbjct: 538 GPEELLPATELAKKKSRRRPRKRRRKSEEKVEAAAAPSLPEGMDESPISPEQDVFGEILS 597 Query: 597 KAEAKPERQQDRRKPRQNNRRDRNERRDTRSER 629 + + ++ + R++ E Sbjct: 598 YPPVITQESVEEHPVLSPVSQESDNRKEVIEEE 630 >UniRef50_A6VXP7 Ribonuclease, Rne/Rng family n=3 Tax=Gammaproteobacteria RepID=A6VXP7_MARMS Length = 1071 Score = 516 bits (1328), Expect = e-144, Method: Composition-based stats. Identities = 407/1044 (38%), Positives = 534/1044 (51%), Gaps = 6/1044 (0%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M RMLINATQQEELRVALVDGQRLYDLDIES EQKK+NIYKG+ITRIEPSLEAAFVD+ Sbjct: 1 MIRMLINATQQEELRVALVDGQRLYDLDIESGSREQKKSNIYKGRITRIEPSLEAAFVDF 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GA+RHGFLPLKEI++ YF + GR NIKDVL EGQEVIVQ+DKEERGNKGAALTTF+ Sbjct: 61 GADRHGFLPLKEISKTYFSKKSNHEGRINIKDVLSEGQEVIVQVDKEERGNKGAALTTFV 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPRAGGISRRI+GDDR+ LKEA++ L PE GLIVRTAGVG+S E L Sbjct: 121 SLAGRYLVLMPNNPRAGGISRRIDGDDRSHLKEAMSGLNTPENGGLIVRTAGVGRSTEEL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDL + W +I KAA +PAPFLI+QESN+++RA RDYLR+DIGE+LID + A Sbjct: 181 QWDLDYLDTLWSSITKAASEKPAPFLIYQESNIVIRAIRDYLREDIGEVLIDEKSAYQDA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + + P F S+IK+YT PLF+ +QIE+QIE+AFQREVRLPSGGSIVID TEAL Sbjct: 241 INFVMQV-MPHFKSRIKMYTDSTPLFNRFQIETQIETAFQREVRLPSGGSIVIDPTEALV 299 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSARAT+GGDIEETA TNLEAADEIARQLRLRD+GGL+VIDFIDMTPVR+Q+ VE Sbjct: 300 SIDINSARATKGGDIEETALQTNLEAADEIARQLRLRDIGGLVVIDFIDMTPVRNQKEVE 359 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 R++ A+ DRAR+Q+ ISRFGLLEMSRQRL PSLGE+S VCPRC+G G +RD ESL+ Sbjct: 360 TRMKNALEADRARVQLGRISRFGLLEMSRQRLRPSLGETSGIVCPRCNGQGFIRDVESLA 419 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LS+LRLIEEE KE T ++ A++PV +A++LLNEKR+ + IE R + V ++VPN ME Sbjct: 420 LSVLRLIEEECSKERTAQIRAVLPVSVATFLLNEKRTNIAKIEKR-NNVHIILVPNPHME 478 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPH+ V R+R + + L E P E A +P A ++ PA Sbjct: 479 TPHFEVERIRDDSTVVSQNENSYTLVETPEQPPYEPRKANEN--VRPQAAVTSIAPKAPA 536 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 P PAA + L K Q + Sbjct: 537 PEHTAPAAATPKVVKAQDKPSLLKRIITALFGETQSKPKQKTVSKTPPVAPSQNDRDTSS 596 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 KP + R R ++ + + +E+ + + + Sbjct: 597 KPNGNRVNRNKRNVKHQNADRDDNNTAEKNRSTRQSRREQAESGTKGTSNNRRNNRGNKQ 656 Query: 661 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR 720 E E E R ++ + + ++ + N + E E + + Sbjct: 657 ETQEPRVEKQEAAVKAAPRQPQKEVPEVKERKRDRNDNRRRNGKLKDEALEATKLQEQED 716 Query: 721 KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ 780 + ++ + + +E + E V+ T Sbjct: 717 AALVEAAQNAEVENHENGDEPQRRSRRSRRSRRPQKEENSAPQENVESESDETQSTVTAA 776 Query: 781 QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG 840 + + + + V A Sbjct: 777 AQTEEVKSTTPEVKQTEAEAKSVDTTSEFSTKDEPEAVEAVEAVEAVEAVEAVEAVEAVE 836 Query: 841 KVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPV 900 V + EE +E+ +P ++ V A + + E V Sbjct: 837 AVEAEKVESTNAEQATEETKEKSP-EAKPAKPKMSVKAQMRKIEQETPEVASIATDETKV 895 Query: 901 QVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEV 960 + AE + + +T A E + ++ + + ++P E Sbjct: 896 EQAEVELKTTTSTAEIQTATPTEEPAVEASVTEEIKTEAPEKPTTVEIKPVAIEPTPEVT 955 Query: 961 VETAEVVVAEP-EVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYV 1019 T + V +E V + E + P T A AP + Sbjct: 956 EATTDPVTSETVAVDSSETKEAEEEKVQNAARSSTRTPRRGRGKPATKQANTEAKAPVEL 1015 Query: 1020 PEAPRHSDWQRPTFAFEGKGAAGG 1043 P A + E + AA Sbjct: 1016 PAAILAQQEKLRLEQEEKRNAATS 1039 Score = 69.6 bits (168), Expect = 7e-10, Method: Composition-based stats. Identities = 55/518 (10%), Positives = 110/518 (21%), Gaps = 2/518 (0%) Query: 544 AEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPE 603 E + +A A ++ + P Sbjct: 427 EEECSKERTAQIRAVLPVSVATFLLNEKRTNIAKIEKRNNVHIILVPNPHMETPHFEVER 486 Query: 604 RQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVT 663 + D QN + N + + A E A T Sbjct: 487 IRDDSTVVSQNENSYTLVETPEQPPYEPRKANENVRPQAAVTSIAPKAPAPEHTAPAAAT 546 Query: 664 EKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQR 723 K A ++ + + + + ++ + + +++ +P R + Sbjct: 547 PKVVKAQDKPSLLKRIITALFGETQSKPKQKTVSKTPPVAPSQNDRDTSSKPNGNRVNRN 606 Query: 724 QLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEE 783 + N K + E P +++ Sbjct: 607 KRNVKHQNADRDDNNTAEKNRSTRQSRREQAESGTKGTSNNRRNNRGNKQETQEPRVEKQ 666 Query: 784 NNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVW 843 A + R RRR + L + + + + Sbjct: 667 EAAVKAAPRQPQKEVPEVKERKRDRNDNRRRNGKLKDEALEATKLQEQEDAALVEAAQNA 726 Query: 844 IRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVA 903 + Q +R + Q P A E Sbjct: 727 EVENHENGDEPQRRSRRSRRSRRPQKEENSAPQENVESESDETQSTVTAAAQTEEVKSTT 786 Query: 904 EPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVET 963 + + + + + V + V E + E+V T Sbjct: 787 PEVKQTEAEAKSVDTTSEFSTKDEPEAVEAVEAVEAVEAVEAVEAVEAVEAVEAEKVEST 846 Query: 964 AEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAP 1023 E P A + + +E E + AT A + Sbjct: 847 NAEQATEETKEKSPEAKPAKPKMSVKAQMRKIEQETPEVASIATDETKVEQAEVELKTTT 906 Query: 1024 RHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE 1061 ++ Q T E A + AP +P VE Sbjct: 907 STAEIQTATPTEEPAVEASVTEEIK--TEAPEKPTTVE 942 >UniRef50_Q6FEY0 Ribonuclease E (RNase E): endoribonuclease for rRNA processing and mRNA degradation n=1 Tax=Acinetobacter sp. ADP1 RepID=Q6FEY0_ACIAD Length = 1138 Score = 512 bits (1318), Expect = e-143, Method: Composition-based stats. Identities = 383/1128 (33%), Positives = 533/1128 (47%), Gaps = 82/1128 (7%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINAT EE+RVAL+ G RLYD D+E+ EQKK+NIYKG +TR+EPSLEA FV+Y Sbjct: 1 MKRMLINATHAEEVRVALITGNRLYDFDLENRTREQKKSNIYKGHVTRVEPSLEAVFVEY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GA+R GFL ++EIA Y + NI++++ EG E++VQ++KEERGNKGAAL+TFI Sbjct: 61 GAQRQGFLSMREIASSYL--HADPRQTSNIRELITEGTELLVQVEKEERGNKGAALSTFI 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNP+ GGISR+I G R ELKE LASL +P GM +IVRTAG+G+S E L Sbjct: 119 SLAGRYLVLMPNNPKGGGISRQISGSVREELKEMLASLNVPRGMSVIVRTAGIGRSQEEL 178 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q DL L W I+ + S P+P L+HQE+ V+ RA RDYLR D+ EILID+ + A Sbjct: 179 QLDLQHLLDLWSQIQSTSNSGPSPMLVHQEAGVVTRAIRDYLRDDVAEILIDSEQAYNEA 238 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + A+ P K+K YT PLF+H+ IESQI++A++REV+LPSGGSIVID TEAL Sbjct: 239 YNFVKAV-MPRQLDKLKTYTLNEPLFAHFAIESQIQTAYEREVKLPSGGSIVIDQTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSA++TRG D+EETA NTNLEAA+EIARQLRLRD+GGL+VIDFIDMT R+QR VE Sbjct: 298 SIDINSAKSTRGHDVEETALNTNLEAAEEIARQLRLRDIGGLVVIDFIDMTKDRNQRMVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 +LREA + DRARIQ +SRFGL+EMSRQRL PSL E++ +VCPRC GTG VRD SLS Sbjct: 358 AKLREATQSDRARIQFGQLSRFGLMEMSRQRLRPSLEEATGYVCPRCHGTGMVRDLRSLS 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSI+R +EE AL+E EV VPV IA++LLNEKR ++ + GVR ++P+ +E Sbjct: 418 LSIMRKVEEIALRERHGEVQVEVPVEIAAFLLNEKRHSLV-YLEQTSGVRVTVLPHPHLE 476 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPHY + +G + E + Q A Sbjct: 477 TPHYEIQYNPEGFAPSSYERTEATRSSEKELGYESSGWHLEDTEHQHASPVSQEASKAKN 536 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQ------- 593 A A P A+P A + + + + S EQ Sbjct: 537 QQKPASPASAPAATPV-KAASPCAWLENLFVQKQAQTVDQSRSAQNAAAAIEQMVNNGAV 595 Query: 594 ----------------------------PAPKAEAKPERQQDRRKPRQNNRRDRNERRDT 625 + R+Q + + + +N ++ Sbjct: 596 SRGQFGQVAHVPAIAETAPVAVPSNNAYMSQNTTKHDAREQVEKDEKPQQQSRQNNKKRK 655 Query: 626 RSERTEGSDNREENRRN------------RRQAQQQTAETRESRQQAEVTEKARTADEQQ 673 E E ++ +E + + Q +Q+ + R +E + + +E Sbjct: 656 HKEHREQHNHVQEQPQQVQIHEETVQLSRQEQREQKRHQKRHQSSPSEQHNEQQQTEEAV 715 Query: 674 APRRERSRRRNDDK-----RQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQL--- 725 PRR+R+++R + + E A + +ER V R Sbjct: 716 VPRRDRNQQRPNRPNRYRDQSVLSEETAQTKAPANATAPVVDERQVRVDQIDVPRDEVLA 775 Query: 726 NQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENN 785 V E V +ETV P+++ P L + + Q P E + Sbjct: 776 TALVINVDESQSEIVALTEQKETVKTAPVMKSEPVEAKTLPENKVKAATQVEPAVAETKS 835 Query: 786 ADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKV--- 842 + RR+ R+ RRR + E ++ P + P+LA + Sbjct: 836 KQTESTDSASTQVRRASNDPRM----RRRQQREAQKAKAQTPKVLPSQVPQLAQYSIGSL 891 Query: 843 ------------WIRYPIVRPQDVQVEEQREQEEVH--VQPMVTEVPVAAAIEPVVSAPV 888 ++ +V + + + EQ V + + V P Sbjct: 892 IRHVYGEDCTVLIEQFGLVPTFNRALLKFTEQYAATLVVSEVANATEDKKPVTRDVELPN 951 Query: 889 VEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVV 948 + V APV P V + + + A Q Sbjct: 952 SKPAEEVEPAPVLPLTPPQASVSRVANDPRERRRLAKQAAEQAHEQAKLAAEQAQIGSKE 1011 Query: 949 EPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATA 1008 +P + A VE A + P VV + A + A+ E A Sbjct: 1012 QPAAD-AVATSQVEEAPKSIETPVEAIALVEAVVDQPTATIVQEASTEEVAATSQIAVEA 1070 Query: 1009 PMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPAR 1056 + A + ++ A A +A S + Sbjct: 1071 EQPQHDAVQASLPEIEQAETATTPQAKGKTSKATAKSAPKETSTEQEK 1118 >UniRef50_Q0ABM4 Ribonuclease G n=2 Tax=Proteobacteria RepID=Q0ABM4_ALHEH Length = 492 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 176/492 (35%), Positives = 264/492 (53%), Gaps = 9/492 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + ++ E RVALV+ L +L +E N+YKG++ R+ P ++AAF++ Sbjct: 1 MAQEILINVTPRETRVALVENGVLQELHLERARRRGLVGNLYKGRVVRVLPGMQAAFIEA 60 Query: 61 GAERHGFLPLKEIAR----EYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL 116 G ER FL +IAR I ++L EGQEV+VQ+ K+ G+KGA L Sbjct: 61 GLERTAFLHASDIARAEPAPVGDEPNGRPPPLPIDELLTEGQEVVVQVLKDPIGSKGARL 120 Query: 117 TTFISLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEG-MGLIVRTAGVG 174 TT I++ YLVL P RA G+S R+E +R L+ SL G MG+IVRTA Sbjct: 121 TTHITIPSRYLVLAP-GSRALGVSARVEDPAERERLRAIGESLLADRGDMGIIVRTAAEQ 179 Query: 175 KSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNP 234 + EAL+ D F L+ W++I + A A +H++ + VRA RD ++ + +D+ Sbjct: 180 VAEEALRADFDFLLRLWQSISERAAHASAGQRVHEDLPLTVRAMRDLAGSEVERVRVDSR 239 Query: 235 KVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVID 294 + P+ + +++ Y GE PLF Y IE +I A R V L SGG +VID Sbjct: 240 ENYLNVVSFCRRF-LPEMAPRVEYYPGERPLFDLYNIEDEILRALNRRVPLKSGGHLVID 298 Query: 295 STEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVR 354 TEA+T +D+N+ +EET F TNLEAA IARQLRLR+LGG+I++DFIDM Sbjct: 299 QTEAMTTVDVNTGAYVGHRTLEETIFKTNLEAAQAIARQLRLRNLGGIIIVDFIDMVEEE 358 Query: 355 HQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVR 414 H+R V L +A+++D A+ QIS +S GL+EM+R+R SL CP C G G+V+ Sbjct: 359 HKRQVLRALEKALQKDHAKTQISGVSALGLVEMTRKRTRESLEHQLCESCPTCGGRGSVK 418 Query: 415 DNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIV 474 E++S I R I EA + ++ + + + LL ++ +++ +E G + Sbjct: 419 SAETVSYEIFREILREARQFESRRLVVLAATEVVDLLLEDESTSLAQLEEFI-GRPIELQ 477 Query: 475 PNDQMETPHYHV 486 + V Sbjct: 478 AESLYTQEQFDV 489 >UniRef50_Q11NU1 Ribonuclease G n=10 Tax=Bacteroidetes RepID=Q11NU1_CYTH3 Length = 535 Score = 511 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 145/532 (27%), Positives = 245/532 (46%), Gaps = 26/532 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M L ++ Q R+AL+ +RL + E + +IY G + ++ P L AAF+D Sbjct: 1 MSNELFISSSQSGDRIALIQEKRLVEYQFEDHTRKFNVGDIYLGTVRKVVPGLNAAFIDV 60 Query: 61 GAERHGFLPLKEIAREY----------------------FPANYSAHGRPNIKDVLREGQ 98 G E+ FL ++ + F + VL +G Sbjct: 61 GYEKDAFLHYFDLGPKIKSLTKFTKNAITSASTPALLKKFELEAEIKKDGKVSQVLEKGN 120 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASL 158 ++VQ+ KE KG L+ ISLAG YLVL+P + +S++I + + L S Sbjct: 121 PILVQVVKEPISTKGPRLSCEISLAGRYLVLVPFSN-VVSVSKKITDKEERQRLVRLISS 179 Query: 159 ELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAF 218 PE G+I+RT K L DL +K WE + LI E + Sbjct: 180 IRPENFGVIIRTVASNKEVAELDKDLRNLVKTWEDGIAILKKARPRDLIIGELDRTSSIL 239 Query: 219 RDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESA 278 RD L + I +D ++ + R +I + PD +KL+ G+ +F +E Q+++ Sbjct: 240 RDMLNESFDSINVDTKELYDDLRSYIKNIA-PDKERLVKLHQGKTKMFESTGVEKQLKTL 298 Query: 279 FQREVRLPSGGSIVIDSTEALTAIDINSA-RATRGGDIEETAFNTNLEAADEIARQLRLR 337 F + V L GG ++I+ TEAL ID+NS ++ EETA +TNLEA E+ARQLRLR Sbjct: 299 FGKSVSLSGGGYLIIEHTEALHVIDVNSGNKSNNETSQEETALHTNLEACREVARQLRLR 358 Query: 338 DLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLG 397 D+GG+IV+DFIDM + +++ + R++ ++ DR++ I +S+FGL++++R+R+ P Sbjct: 359 DMGGIIVVDFIDMKNLDNRKVIYERMKLEMKDDRSKNVILPLSKFGLMQITRERVRPQTN 418 Query: 398 ESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRS 457 + VCP C+GTG + + +++ I ++ K+N + + ++ I +Y S Sbjct: 419 LITMEVCPTCNGTGKISASIAITDQIEHKLDYIITKQNEKNITLVLHPYIYAYFTTGYIS 478 Query: 458 AVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEA 509 + + + + + L E Sbjct: 479 KRTKWFFKYF-RWVKLRTDSSLGLTEFKFLDEGAQNIDMESEATTEDYRSEE 529 >UniRef50_C6JJB6 Ribonuclease G and E n=2 Tax=Fusobacterium RepID=C6JJB6_FUSVA Length = 489 Score = 510 bits (1313), Expect = e-142, Method: Composition-based stats. Identities = 152/471 (32%), Positives = 253/471 (53%), Gaps = 5/471 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M +++IN + + R A+++ ++ ++ IE + +IYKGK+ + P +E+AFV+ Sbjct: 1 MNQIVINIDEF-QSRAAIIEDGKVVEILIEREEEGRINGSIYKGKVANVLPGMESAFVNI 59 Query: 61 GAERHGFLPLKEIAREYFP-ANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G E++GFL + ++ + + I+D+L G +V+VQI E RG KGA +TT Sbjct: 60 GLEKNGFLYVNDLREFEEKYLDGILNSSRPIEDILNVGDDVVVQILNEPRGTKGARVTTH 119 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ++ G YLVLMPNN IS++I+ + E E++ PE MG+I+RTA GKS Sbjct: 120 FTIPGKYLVLMPNNDHI-AISKKIKDEKERERLESIFKEIKPENMGVIIRTAAFGKSEFH 178 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + ++ + +K WE I+K + ++++++ +I RD DI E+++DN V Sbjct: 179 FEREIEYLVKKWEDIEKKIKGAKIGEVLYKDNGIITTVLRDIFSNDIDELIVDNEDVYWE 238 Query: 240 ARQHIAALGRPDFSSKIKLYTG--EIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 +I A +KIKLY E +F Y I +I+ A V L GG +VI TE Sbjct: 239 VIDYINAFSEKTLKTKIKLYKDGKEKDIFDLYGINEEIDKALNEVVWLECGGYLVIQKTE 298 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 AL +ID+N+ + T ++EET NTN+EAA EI RQLRLR+ GG+I+IDFIDM + Sbjct: 299 ALISIDVNTGKNTGSLNLEETVVNTNIEAAKEIPRQLRLRNFGGIIIIDFIDMRVEEDKI 358 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V L + +++DR + I H + GL+EM+R+R L VCP C+GTG ++ + Sbjct: 359 KVLEALEKHLQKDRIKNNIVHFTDLGLVEMTRKRSGKPLAYYFQEVCPCCNGTGKIKSKD 418 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDG 468 +L +++ I+ + ++ + + + + + Sbjct: 419 ALIHELMKEIKICSEDKDISTIKVRLSKNLIESFKEIYFEIIKEFLKMKKK 469 >UniRef50_B2KEH9 Ribonuclease, Rne/Rng family n=1 Tax=Elusimicrobium minutum Pei191 RepID=B2KEH9_ELUMP Length = 483 Score = 509 bits (1310), Expect = e-142, Method: Composition-based stats. Identities = 157/488 (32%), Positives = 267/488 (54%), Gaps = 19/488 (3%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K ++ T EE RVA+V+ RL +L E G NIYK + + P + +AFV+ G Sbjct: 9 KVEVLANTSFEETRVAIVENGRLAELMWERRGAVNIVGNIYKATVENVLPGISSAFVNIG 68 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFIS 121 E++ +L + ++ + + NI+ V+++GQE++VQ+ K+ G KG +T ++ Sbjct: 69 YEKNAYLYISDVLGD---------EKKNIEKVIKKGQEIMVQVVKDAIGTKGMKITMDVT 119 Query: 122 LAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELP--EGMGLIVRTAGVGKSAE 178 L G +LVL P+ G+S+ IE + +R +L + + L GMG IVRT + + Sbjct: 120 LPGRFLVLTPHQSFV-GVSKNIEDNQERHKLNDMVQELAEKYLHGMGCIVRTEAEEATKD 178 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 L+ ++ + + W++I E+ P+P ++H++ + +++ RD L ++I +DN K E Sbjct: 179 ELEREVKYLYRQWQSILNKFETLPSPSILHEDMDAVLQVSRDILSENIEVYYLDNKKDYE 238 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 ++ P+ KIKLY G+ P+F + IES+I++ + ++ LP+GGSI+I E+ Sbjct: 239 NVLDFVSK-NSPELKDKIKLYKGKTPIFEAFNIESEIDNLRKTKISLPNGGSIIIQEAES 297 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 L AID+N+ + T EET TN+EAA E+A QLRLR++GG++VIDFIDM ++ Sbjct: 298 LCAIDVNTGKFTGSKSQEETVTQTNIEAAQEVAHQLRLRNIGGIVVIDFIDMKKASNRHR 357 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 V L +AV +DRA+I+I I+R GL+EM+R+R S G CP+C G+G V ES Sbjct: 358 VVEALADAVHRDRAKIRILPITRLGLVEMTRERKKESTGSLLTEECPQCHGSGRVLSAES 417 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 + + I R I + + ++ +A + ++ + I + Q Sbjct: 418 MRIKIQREIYDLTQGRPGGNLRIVLHPELAD-----QIKHQQSVIEQNIHRSMKIQSDAQ 472 Query: 479 METPHYHV 486 + Y + Sbjct: 473 LSWEDYKI 480 >UniRef50_B0TWF6 Ribonuclease G n=17 Tax=Francisella RepID=B0TWF6_FRAP2 Length = 509 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 159/499 (31%), Positives = 256/499 (51%), Gaps = 14/499 (2%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 + + E R+A+ + L ++ IE ++ NIYKGKI R+ P ++AAFVD G Sbjct: 15 NTEIFLNINKYEQRIAIKENNILKEILIERDNQKRIVGNIYKGKIIRVLPGMQAAFVDIG 74 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRP-------NIKDVLREGQEVIVQIDKEERGNKGA 114 E+ GFL L E+ S +I LREGQEV+VQ+ KE GNKG Sbjct: 75 LEKAGFLHLSEVIPLERDDEESDENFKLNKLNTEDINKWLREGQEVLVQVVKESIGNKGV 134 Query: 115 ALTTFISLAGSYLVLMPNNPRAGGISRRIE-GDDRTELKEALASLELPEG-MGLIVRTAG 172 LT+ +S++ +LV +P+ GIS +I +++ L +++ + E G I+RTA Sbjct: 135 KLTSHLSVSSRFLVFLPDLDHI-GISLKISKEEEKQRLLDSIKKITQSENPRGYILRTAA 193 Query: 173 VGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILID 232 G S E L+ D+ F W+ I + + P +++++ ++I++ + + +I +D Sbjct: 194 EGASYEELENDIKFLNNLWQDILDISSTIIKPGVVYEDFSLIIKTINIFANDNPDKIHVD 253 Query: 233 NPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIV 292 + + Q A P KI+LY + +F Y I+ +I A + V L SGG +V Sbjct: 254 DIDSYKEICQF-ADKYIPGLRDKIELYQ-KHNIFEEYDIDVEINKALDKTVYLKSGGYLV 311 Query: 293 IDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTP 352 I+ TEA+ IDIN+ ++EET F TNLEA EIARQLRLR+LGG+I+IDFIDM Sbjct: 312 IEQTEAMITIDINTGGFIGTKNLEETIFKTNLEATKEIARQLRLRNLGGIIIIDFIDMMD 371 Query: 353 VRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGT 412 H+ V L++ + D+A+ +S IS GL+EM+R+R+ SL + C C+G G+ Sbjct: 372 ESHKNQVLEALKKELELDKAKTSVSDISELGLVEMTRKRVHESLLRTLCQPCEHCNGKGS 431 Query: 413 VRDNESLSLSILRLIEEEALK-ENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRC 471 V+ +++ I R I+ E+ N + I Y+ E+ + +E D Sbjct: 432 VKTLQTICYDIFREIKSESKNYPNYNNFLLMSSKKIIDYIEREESIWLAELELEIDK-NI 490 Query: 472 VIVPNDQMETPHYHVLRVR 490 + Y ++ + Sbjct: 491 YLKAESNHIYNQYDIIPLN 509 >UniRef50_C6D805 Ribonuclease, Rne/Rng family n=3 Tax=Bacillales RepID=C6D805_PAESJ Length = 411 Score = 508 bits (1308), Expect = e-142, Method: Composition-based stats. Identities = 141/412 (34%), Positives = 229/412 (55%), Gaps = 7/412 (1%) Query: 10 QQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLP 69 E L+ A++ RL D +E N+YKG++ + P ++AAFVD G ++ FL Sbjct: 4 HGELLQTAVLMDGRLIDFFMEQSESSGLVGNVYKGRVVNVLPGMQAAFVDIGLGKNAFLY 63 Query: 70 LKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129 + ++ + +P+I ++++ GQE++VQ+ KE G+KGA +TT +L G +LV Sbjct: 64 IDDLLHPHL--EKQPEHKPSITELVKPGQELVVQVMKEPMGSKGARVTTHFTLPGRWLVY 121 Query: 130 MPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLK 189 MP G+S++I + + G+I+RTA G+ E+L D+ + Sbjct: 122 MPIAGYI-GVSKKIMAESERSRIRMIGERLRQGEEGIIMRTAAEGECEESLGADVDQLRQ 180 Query: 190 HWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGR 249 W ++ + A+ AP +H+E+ ++ RA RD L D+ E+ +D+P A + + Sbjct: 181 LWTSVLQRADHAKAPAELHREAGLLRRAVRDTLTDDMDEVWLDDPSRYSEAVSLLKEMT- 239 Query: 250 PDFSSKIKLYT---GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINS 306 P + ++KL+ ++ LF + + QIE+AF +RL SGGS+V D TEALT ID+N+ Sbjct: 240 PHLAGRLKLFEARKEKVSLFDRFGVTDQIEAAFSSRIRLESGGSLVWDETEALTVIDVNT 299 Query: 307 ARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREA 366 A+ +E+T F TN+EAADEIAR LR+RD+GG+IVIDFIDM ++ V RL + Sbjct: 300 AKYIGATGLEDTVFKTNMEAADEIARLLRIRDVGGIIVIDFIDMENESNREKVMARLSDW 359 Query: 367 VRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 ++DR + + +R GLLE++R++ + CP C GTG S Sbjct: 360 AKKDRTKCTVFGWTRLGLLELTRRKARDNAARQLTERCPACGGTGKKSSIHS 411 >UniRef50_C1A932 Ribonuclease G n=1 Tax=Gemmatimonas aurantiaca T-27 RepID=C1A932_GEMAT Length = 520 Score = 507 bits (1304), Expect = e-141, Method: Composition-based stats. Identities = 158/504 (31%), Positives = 258/504 (51%), Gaps = 24/504 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKR ++ E RVA+++ +L +L ++ P + ++Y GK+ + P ++AAFV+ Sbjct: 1 MKREILVNATPRETRVAIIEDGQLVELLVDRPDARRMVGDVYLGKVEAVLPGIQAAFVNI 60 Query: 61 GAERHGFLPLKEIARE--------------------YFPANYSAHGRPNIKDVLREGQEV 100 G E+ FL ++ E I+D+L+ GQE+ Sbjct: 61 GTEKSAFLHAADVVVEDAQVSDDDDDDEDESGEESGGGGGRRGRREVRPIQDLLKRGQEI 120 Query: 101 IVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLE 159 +VQI KE KG +T +SLAG +LV MP + G+SR+I+ +R L+ + + Sbjct: 121 LVQITKEPISTKGPRVTAQVSLAGRFLVYMPFASKV-GVSRKIDERSERQRLRAMVGEML 179 Query: 160 LPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFR 219 + G+IVRT + E + +L + +W+ IK+ + AP L+H+E+NV R Sbjct: 180 PDDAGGVIVRTVSEDATKETFERELQTLINNWKRIKRKTQFTRAPSLVHRETNVTRGLVR 239 Query: 220 DYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAF 279 D + + +D+ +V +++ + P+ ++KLY +PLF IE++I F Sbjct: 240 DLFSAKVERVQVDSKQVYNEITEYLQGIA-PELVERVKLYEENVPLFDKEGIETEIRDLF 298 Query: 280 QREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDL 339 +R LPSGG ++ + TEAL +ID+NS R T D E+T TN EAA EIARQLRLRD+ Sbjct: 299 KRRCDLPSGGYLIFEPTEALVSIDVNSGRYTGKRDPEKTILKTNTEAAREIARQLRLRDV 358 Query: 340 GGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGES 399 GG+IV DFIDM ++ V + LR + +DRAR + +S GL+EM+RQR+ S S Sbjct: 359 GGIIVCDFIDMETQSNRDKVLHELRTHLGRDRARTKAFAVSDLGLVEMTRQRVRQSHWHS 418 Query: 400 SHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAV 459 CP CSGTG V E++ R + A + + V + +A ++L ++ + Sbjct: 419 MTEGCPTCSGTGRVFTPETIVRRTERAVRRMAAEGRKEPVVLRLHPEVALHVLEQEHDFM 478 Query: 460 NAIETRQDGVRCVIVPNDQMETPH 483 + G + + ++ Sbjct: 479 KR-LEKMAGFTLELRDDPLLKPDE 501 >UniRef50_A0LIP4 RNAse G n=22 Tax=Bacteria RepID=A0LIP4_SYNFM Length = 530 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 172/528 (32%), Positives = 273/528 (51%), Gaps = 38/528 (7%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M LI E RVALV+ ++ +L IE NIYKG++ ++ P ++AAFVD Sbjct: 1 MSAELIINGSAFETRVALVENGQVAELHIERSSDRGIAGNIYKGRVVKVLPGMQAAFVDI 60 Query: 61 GAERHGFLPLKEIAREYFPAN---------------------------------YSAHGR 87 E+ FL + +I + Sbjct: 61 DLEKAAFLYVSDIHHPMGDVEQLLLSTCEVEPDVEKVDSAREPGAPEFQDVLDLQRYYSS 120 Query: 88 PNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD- 146 I++ L+EGQE++VQ+ KE G+KGA +TT I+L G +LV MP G+SRRIE + Sbjct: 121 VPIEERLQEGQEILVQVAKEPIGHKGARITTHITLPGRHLVFMPTMDHV-GVSRRIENEV 179 Query: 147 DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFL 206 +R L+E + + P G IVRTA G E LQ ++ F +K W+ I++ ES P L Sbjct: 180 ERKRLREIMCEI-KPSHCGFIVRTAAEGAEPEKLQVEVDFLVKVWQNIQRRFESASVPSL 238 Query: 207 IHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLF 266 ++QE ++ +RA RD +++ ++ID+ + I P S I+LY G+ P+F Sbjct: 239 VYQELDITLRAVRDLFTKEVDRLVIDSRSEHKKITNFIETF-LPALQSSIELYEGDEPIF 297 Query: 267 SHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEA 326 Y IE +++ A +++ L SGG IVI+ TEALTA+D+N+ R ++EET TNLEA Sbjct: 298 DAYGIEMEVQRALSKKIWLKSGGYIVIEMTEALTAVDVNTGRYVGKRNLEETILKTNLEA 357 Query: 327 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLE 386 EIA QLRLR++GG+I+IDFIDM ++ V N L++A+ +D+++ I H+S GL+E Sbjct: 358 VKEIAYQLRLRNIGGIIIIDFIDMEKESNREKVCNALKDAMHKDKSKTNILHMSELGLIE 417 Query: 387 MSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVP 446 M+R+R S+G+ C C G G ++ +++ ILR +E E Q + + Sbjct: 418 MTRKRTRESIGQVLCEPCFYCEGEGYLKSRQTVCYEILRELEREKRDLYGQNIMVLAHPE 477 Query: 447 IASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEE 494 +A+ +E R + +E R ++ + Y + + + Sbjct: 478 VAARFCDEDRGPLERVEETLHA-RIMVKGDPGFHLEQYEIAPLESEKR 524 >UniRef50_D1N7U6 Ribonuclease, Rne/Rng family n=2 Tax=Lentisphaerae RepID=D1N7U6_9BACT Length = 544 Score = 506 bits (1302), Expect = e-141, Method: Composition-based stats. Identities = 188/539 (34%), Positives = 281/539 (52%), Gaps = 49/539 (9%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 + +I ++ E R AL++ RL + IE G+E K +IY GKI +EPSL+AAFVD GA Sbjct: 6 KQIILNCEKLERRFALLNNGRLEEYQIERDGNEPKVGDIYLGKIINLEPSLQAAFVDIGA 65 Query: 63 ERHGFLPLKEIAREYFP------------------------------------------- 79 E++ FL E+ Sbjct: 66 EKNAFLHYHEMLPGCDELLGRRDSDDDDDEKTVSGNEQPIQAKRQKRQEAKPNSKVNQEA 125 Query: 80 -ANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGG 138 +I ++ + G E++VQ+ K KGA +TT IS+AG YLVLMP + G Sbjct: 126 LRRKKKLTVADIPNIFKPGMEILVQVVKSPISTKGARVTTDISIAGRYLVLMPYSEHI-G 184 Query: 139 ISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKA 197 +S RIEG +R L++ LA+LELPEGMGLI RT G G+ + + DL L +W I+K Sbjct: 185 LSTRIEGGQERDRLRKILAALELPEGMGLICRTVGEGRRSTFFKRDLDLLLDNWRKIEKG 244 Query: 198 AESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIK 257 ++R AP L++ E N++ R RD++ ++ I++D+ + + G + K+ Sbjct: 245 MDTRNAPALLYTEPNLVERTIRDFMTEEFQGIVVDDADASCQIIETLNRFGGRKMAEKVT 304 Query: 258 LYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEE 317 LY P+F Y+I Q+ FQREVRLP GG+IV+D TEAL AID+NS R +G D E Sbjct: 305 LYNSGKPVFEAYRINDQLREVFQREVRLPGGGAIVVDETEALIAIDVNSGRGRKGADQPE 364 Query: 318 TAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQIS 377 TNLEAA+EIARQLRLR++GGL+V+DFIDM R + V ++ V+ DRA+ ++ Sbjct: 365 FILKTNLEAAEEIARQLRLRNIGGLVVLDFIDMRSARDREEVYRTMKRLVKDDRAKTKVL 424 Query: 378 HISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEAL--KEN 435 +SR GL+EM+RQR S+ + CP C G+G V+ S+S+ I R + + Sbjct: 425 PLSRLGLMEMTRQREHESIKDQVFMPCPYCHGSGRVKSVVSMSVEIQRRLNTVLRESRYR 484 Query: 436 TQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEE 494 + V I+ I L NE + +E + + + + + ++ G+E Sbjct: 485 NRPVRVIMHPDILQRLRNEDALLLRELEEKY-KHDLSFRADPMLHSEEFKLVDPDTGDE 542 >UniRef50_Q1MQA2 Ribonucleases G and E n=2 Tax=Desulfovibrionaceae RepID=Q1MQA2_LAWIP Length = 666 Score = 504 bits (1297), Expect = e-141, Method: Composition-based stats. Identities = 195/473 (41%), Positives = 281/473 (59%), Gaps = 10/473 (2%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLI+ E++ VA+ +L++ IE H + + NIYKG I I+ +L+AAF++YG Sbjct: 177 KKMLISVIPGEQVEVAISSDGQLFEYFIEMNHHAKIRGNIYKGVINNIDANLQAAFINYG 236 Query: 62 AERHGFLPLKEIAREYFPANYSA---HGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 ++GFL + E+ EY+ + P I+ VL+ GQE++VQ+ KE GNKGA LTT Sbjct: 237 NTKNGFLQIDEVHPEYYLQPHEPTKLKKYPPIQKVLKAGQEILVQVVKEPTGNKGAFLTT 296 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSA 177 ++SLAG +LVL P + GISR++E ++ RT L+E + L+ G+G IVRT +G S Sbjct: 297 WLSLAGRFLVLTPGQEQI-GISRKVEDEEERTRLRELIKGLDPGSGLGAIVRTVSIGTSK 355 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 LQ DLSF + W I+K A + +P LI++E + RA RDYL DI EI +D+P+ Sbjct: 356 TTLQKDLSFLKRVWREIRKKATTEKSPCLIYEEPGLATRAVRDYLADDITEIWVDDPETK 415 Query: 238 ELARQHIAALGRPDFSSKIKLYTGE-IPLFSHYQIESQIESAFQREVRLPSGGSIVIDST 296 + ++ + L P + + LY PL+ H+++ QI REV +PSGG +V D T Sbjct: 416 QAIQE-VTTLLFPRKTKLVHLYQNNNEPLWEHFKLNKQIIQVHSREVIMPSGGRLVFDQT 474 Query: 297 EALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 EAL AIDINS R + E A+ TN+EAA IA+QLRLRD+GG IVIDFI+M H Sbjct: 475 EALMAIDINSGRIAGKTNFESMAYRTNMEAAATIAQQLRLRDIGGQIVIDFIEMKEPAHC 534 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDN 416 R VE L+ A++ DRAR + +S FGLL++ RQR+ S S CP C GTG R+ Sbjct: 535 RDVEKELQLAMKADRARHDVGKMSSFGLLQVVRQRIGSSAISISQETCPYCQGTGQRRNI 594 Query: 417 ESLSLSILRLIEEEALKENTQEVHAIVP---VPIASYLLNEKRSAVNAIETRQ 466 E ++ LR I ++ + T H + + YLLN KR+ + A+E Sbjct: 595 EWQAIQTLREIHKKMQQTVTAGKHEYIHTLDQELGLYLLNNKRNRLIALEQEF 647 >UniRef50_P0A9J2 Ribonuclease G n=523 Tax=cellular organisms RepID=RNG_ECO57 Length = 489 Score = 503 bits (1295), Expect = e-140, Method: Composition-based stats. Identities = 157/490 (32%), Positives = 257/490 (52%), Gaps = 8/490 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M L+ E RVA +DG L ++ IE NIYKG+++R+ P ++AAFVD Sbjct: 1 MTAELLVNVTPSETRVAYIDGGILQEIHIEREARRGIVGNIYKGRVSRVLPGMQAAFVDI 60 Query: 61 GAERHGFLPLKEIARE---YFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALT 117 G ++ FL +I +I +++R+GQ+++VQ+ K+ G KGA LT Sbjct: 61 GLDKAAFLHASDIMPHTECVAGEEQKQFTVRDISELVRQGQDLMVQVVKDPLGTKGARLT 120 Query: 118 TFISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKS 176 T I+L YLV MP G+S+RIE + +R LK+ +A E G I+RTA G Sbjct: 121 TDITLPSRYLVFMPGASHV-GVSQRIESESERERLKKVVAE-YCDEQGGFIIRTAAEGVG 178 Query: 177 AEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKV 236 L D ++ + W + + + + ++ E + R RD+ ++ I +D+ Sbjct: 179 EAELASDAAYLKRVWTKVMERKKRPQTRYQLYGELALAQRVLRDFADAELDRIRVDSRLT 238 Query: 237 LELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDST 296 E + + P+ +SK++ YTG P+F + +E++I+ A +R+V L SGG ++ID T Sbjct: 239 YEALLEFTSEY-IPEMTSKLEHYTGRQPIFDLFDVENEIQRALERKVELKSGGYLIIDQT 297 Query: 297 EALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 EA+T +DIN+ ++++T FNTN+EA IARQLRLR+LGG+I+IDFIDM H+ Sbjct: 298 EAMTTVDINTGAFVGHRNLDDTIFNTNIEATQAIARQLRLRNLGGIIIIDFIDMNNEDHR 357 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDN 416 R V + L +A+ +DR + ++ S GL+EM+R+R S+ + CP C G GTV+ Sbjct: 358 RRVLHSLEQALSKDRVKTSVNGFSALGLVEMTRKRTRESIEHVLCNECPTCHGRGTVKTV 417 Query: 417 ESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPN 476 E++ I+R I ++ +A L E+ ++ +E G + + Sbjct: 418 ETVCYEIMREIVRVHHAYDSDRFLVYASPAVAEALKGEESHSLAEVEI-FVGKQVKVQIE 476 Query: 477 DQMETPHYHV 486 + V Sbjct: 477 PLYNQEQFDV 486 >UniRef50_C6ADR1 Ribonuclease E n=5 Tax=Rhizobiales RepID=C6ADR1_BARGA Length = 876 Score = 503 bits (1294), Expect = e-140, Method: Composition-based stats. Identities = 214/733 (29%), Positives = 354/733 (48%), Gaps = 23/733 (3%) Query: 45 KITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQI 104 I E +L A D + + ++I E + I++V++ Q ++VQ+ Sbjct: 143 IIDNTEEALNA---DISYDEIEMVGAEDIREELPIYQRKQGRQYKIQEVIKRRQILLVQV 199 Query: 105 DKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEG 163 KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I DR LKE + L +P+G Sbjct: 200 IKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKITNVQDRKRLKEIVKELAVPKG 259 Query: 164 MGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLR 223 MG+I+RTAG ++ ++ D + ++ W+ I+ AP L+H+ESN+I R+ RD Sbjct: 260 MGVILRTAGANRTKAEIKRDYEYLMRLWDTIRTLTLESTAPCLVHEESNLIKRSIRDLYN 319 Query: 224 QDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREV 283 ++I EIL+ + A+ + L P + ++ Y P+F+ IE Q++ Q +V Sbjct: 320 KNISEILVSGDQGYREAKDFMRML-MPSHAKVVQPYRDPTPIFARNNIEIQLDKMLQPQV 378 Query: 284 RLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLI 343 L SGG +VI+ TEAL AID+NS R+T+ +E+TA TNLEAA+E+ARQLRLRDL GLI Sbjct: 379 SLKSGGYLVINQTEALVAIDVNSGRSTKEFSVEKTALQTNLEAAEEVARQLRLRDLAGLI 438 Query: 344 VIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHV 403 VIDFIDM R+ + VE +L++ ++ DRARIQ+ HIS FGLLEMSRQR+ S+ ES+ Sbjct: 439 VIDFIDMLEERNVKLVEKKLKDCLKNDRARIQVGHISHFGLLEMSRQRIRISVLESTTQP 498 Query: 404 CPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIE 463 CP C+GTG +R S++L ++R IEE L + + PV A Y+LN KR+ + +E Sbjct: 499 CPHCAGTGNIRSESSIALHVMRSIEEYLLHNSQYNIIVRTPVATALYVLNHKRNILVNLE 558 Query: 464 TRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKR 523 TR + I +D + T H + + E S E ++ E E E Sbjct: 559 TRF-KLNISIEADDSIGTQHLVISKGSIAESISRPSLEDVNKQEIEDSVFIESESIENPS 617 Query: 524 P----EQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALK 579 P ++ + + ++ F ++ Sbjct: 618 PIGTNQKRRRKNRHDEITDHSLSNVHKKEDTLSNDSYRRGRRRGRRGGRRNQDNSFHQIR 677 Query: 580 ALFSG------GEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGS 633 ++ + + K P + + + + N + +++ + Sbjct: 678 IPYAEPVGDFAKQALAEIKAAHRKHRVSPAKSFELEETKNNTQALDIQQQGESKKIDTSI 737 Query: 634 DNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQE 693 ++ R+ + + Q + + V E+ ++ + +++ + DK + E Sbjct: 738 KPKKRKTRSSKVVENQLSLDNDQN----VVEQKSLEEKPKTSSVRKAKTKKADKSIHKVE 793 Query: 694 AKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEP 753 K ++S + T ++ + +K + +K + +E+T+ Sbjct: 794 DKTFENSKKSTRGTRKKSSSKETTQIQK---VLEKETIIEMEEVVETSPSQIEKTINQPV 850 Query: 754 IVQEAPAPRTELV 766 +V P ++ Sbjct: 851 VVSSTPNDSSKTE 863 Score = 95.8 bits (236), Expect = 9e-18, Method: Composition-based stats. Identities = 40/84 (47%), Positives = 55/84 (65%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+A+ EE RV +V G ++ +LD ES +Q K NIY +ITR+EPSL+AAFV+YG Sbjct: 3 NKMLIDASHPEETRVVVVHGNKIEELDFESEHRKQLKGNIYLARITRVEPSLQAAFVEYG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAH 85 RHGFL EI +Y+ + Sbjct: 63 GNRHGFLTFSEIHPDYYQIPIADR 86 >UniRef50_C9RQU1 Ribonuclease, Rne/Rng family n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RQU1_FIBSS Length = 511 Score = 502 bits (1293), Expect = e-140, Method: Composition-based stats. Identities = 163/505 (32%), Positives = 263/505 (52%), Gaps = 14/505 (2%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 KR ++ + E R+A+++ L +L +E + NIYKG + ++ P+L+AAF+D G Sbjct: 6 KRGILISKTPYEKRIAIMEDGELAELVVEGVSSNRVLGNIYKGVVQKVLPALKAAFIDIG 65 Query: 62 AERHGFLPLKEIAR---------EYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNK 112 E+ GFL ++ A +I ++L+EGQE++VQ+ KE K Sbjct: 66 LEKAGFLHQEDAMDRNELLRREYGDDDDEGDASKEISIDEILQEGQEIMVQVVKEPISTK 125 Query: 113 GAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTA 171 GA LTT +S AG +LV MP G+S+R R E K+ + L +G IVRT Sbjct: 126 GARLTTHLSFAGRFLVCMPGANFV-GVSKRERDPVKRREFKKVVRRL-KGRDVGYIVRTN 183 Query: 172 GVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILI 231 G+ +S + + WE K E+ P I++ES+ I + R+Y + + I Sbjct: 184 GLNESEFEINKQMRELESKWEQTKYNFETMPPETCIYEESDSIEQTVREYFGDNTDYVYI 243 Query: 232 DNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSI 291 DN R ++ + PD K+KL++ LF +++IE+ + QR+V LP GG++ Sbjct: 244 DNRDEYFALRDYLK-VLSPDKLDKVKLWSSSESLFEYFKIENDYARSLQRQVPLPRGGNL 302 Query: 292 VIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMT 351 VI+ TEAL +ID+N+ G D + TNL+A EIA+QLRLRD+GGLI+IDFIDM Sbjct: 303 VIEQTEALVSIDVNTGPKVHGKDQGKIILETNLDACHEIAKQLRLRDVGGLIIIDFIDME 362 Query: 352 PVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTG 411 + AV R+A+R+D+A I + IS+FGL+E++R+R+ +L CP C+G+G Sbjct: 363 TDEDREAVYQEFRKAIRRDKAPISPAPISQFGLMEVTRKRVRVNLMTEKTECCPVCNGSG 422 Query: 412 TVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRC 471 + ES I R + K +EV +V P+ L + N +E + + ++ Sbjct: 423 RIATLESTLGMIDRWLARAHTKGRLREVTLVVSAPVIDVLCKDLNRMFNYLEYKHN-IKI 481 Query: 472 VIVPNDQMETPHYHVLRVRKGEETP 496 +V ++ + + + T Sbjct: 482 SLVEDEYAHINQFWMYDKNNEDITD 506 >UniRef50_A6LDG7 Ribonuclease G n=21 Tax=Bacteria RepID=A6LDG7_PARD8 Length = 525 Score = 502 bits (1292), Expect = e-140, Method: Composition-based stats. Identities = 157/529 (29%), Positives = 265/529 (50%), Gaps = 28/529 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M L+ Q +E+ +A+++ + L +L E+ +IY GK+ ++ P L AAF+D Sbjct: 1 MISELVVDVQPKEVSIAVLEDKSLVELQKEARNVSFAVGDIYLGKVKKLMPGLNAAFIDV 60 Query: 61 GAERHGFLPLKEIAREYFPAN----------------------YSAHGRPNIKDVLREGQ 98 G ++ FL ++ + +I DVL+ GQ Sbjct: 61 GYKKDAFLHYLDLGPNFNTQQKYLKQLLSDPKKAPVLSKTQILPEIEKNGSISDVLKVGQ 120 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALAS 157 EV+VQI KE KG LT+ +S AG Y+VL+P + +S +I ++R L++ + S Sbjct: 121 EVLVQIAKEPISTKGPRLTSELSFAGRYIVLIPFADKV-SVSTKIKSSEERARLRQLIQS 179 Query: 158 LELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRA 217 + P+ +IVRT+ GK L +L +K WE AP +I++E+ V Sbjct: 180 I-KPKNFSVIVRTSSEGKRVAELDHELKTLMKRWEDNIVKVPKLKAPAIIYEETARTVAL 238 Query: 218 FRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIES 277 RD I +++ +V R +++ + P ++LYTGE+P+F ++ + QI+S Sbjct: 239 LRDIFNPSFQNIYVNDKEVYNNVRDYVSLIA-PGREEIVQLYTGELPIFDNFAVTKQIKS 297 Query: 278 AFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGD-IEETAFNTNLEAADEIARQLRL 336 F R V SG ++I+ TEA+ ID+NS ++G D E+TA + N+ AADEIARQLRL Sbjct: 298 LFGRTVTYKSGAYLIIEHTEAMHVIDVNSGNRSKGSDAQEKTAIDVNIAAADEIARQLRL 357 Query: 337 RDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSL 396 RD+GG+IVIDFIDM +++ + + +A+ DRA+ I +S+FGL++++RQR+ P++ Sbjct: 358 RDMGGIIVIDFIDMAEAANRQKLFEHMTKAMANDRAKHNILPLSKFGLMQITRQRVRPAM 417 Query: 397 GESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKR 456 + CP C GTGTV+ + + S+ I+ K + ++ V +A+Y+ Sbjct: 418 DVDTSEDCPSCFGTGTVKPSILFTDSLEEKIDCLVNKHHVKKFTLHVHPYVAAYVNKGLF 477 Query: 457 SAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKL 505 + + ++PN + Y K E + Sbjct: 478 PLSMKWKMKYT-HGLKVIPNQSLAFLEYKFFDADKNELDMKEEKEIINK 525 >UniRef50_B5JNK0 Ribonuclease, Rne/Rng family n=1 Tax=Verrucomicrobiae bacterium DG1235 RepID=B5JNK0_9BACT Length = 582 Score = 498 bits (1282), Expect = e-139, Method: Composition-based stats. Identities = 186/514 (36%), Positives = 283/514 (55%), Gaps = 27/514 (5%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQK-KANIYKGKITRIEPSLEAAFVDYG 61 R LI ++ E+RV + L DIE Q+ I+KG+I ++P L+AAFVD G Sbjct: 68 RELIINSEPLEIRVGQLVDGILDKFDIERRHSAQRIVGGIFKGRIKNLDPGLKAAFVDIG 127 Query: 62 AERHGFLPLKEIAR-------EYFPANYSAHGRPNIKDVLRE-------GQEVIVQIDKE 107 ++ FL +I E N S G+ K L+E G E+++QI K Sbjct: 128 MPKNAFLHYWDIQPQEADSSIEVVRVNSSRKGKKQAKIPLKEIPNHYPIGTEIVIQITKG 187 Query: 108 ERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGL 166 G KG TT +S+ G ++VL+P++ + GISR+IE +R LK+ + L +PEGMG+ Sbjct: 188 PIGTKGPRSTTNLSIPGRFIVLVPHSDQ-CGISRKIEDNKERQRLKKIIRDLTIPEGMGI 246 Query: 167 IVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDI 226 IVRTAG GK A DL L+ WE I+K +S AP +++E ++ R RD+L +DI Sbjct: 247 IVRTAGEGKKARYFVRDLHILLQTWEKIQKKMDSARAPACLYKEPDLAERTVRDFLTEDI 306 Query: 227 GEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLP 286 +LIDN + + +A + + SKI+LY IP+F Y IE QIE FQR+V LP Sbjct: 307 DRVLIDNEEDHGRISETVAQISKRST-SKIQLYQDSIPIFERYNIEKQIEQTFQRQVPLP 365 Query: 287 SGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVID 346 SGG+IVI+ TEAL AID+N+ G+ +T F N EAA+E+ARQ+RLR++GGLI+ID Sbjct: 366 SGGAIVIEETEALIAIDVNTGSHKNRGNENDTIFQVNCEAAEEVARQIRLRNIGGLIIID 425 Query: 347 FIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPR 406 FIDM RH+ A+ +R+R+A+ D+A+ I IS G+++M+RQR+ S+ + CP Sbjct: 426 FIDMKQRRHRNAILSRMRDAMSSDKAKTHILPISPLGIMQMTRQRMQESVSSGLYTDCPY 485 Query: 407 CSGTGTVRDNESLSLSILRLIEEEALKENTQ--------EVHAIVPVPIASYLLNEKRSA 458 C G G V+ ++S+ + R + + + ++ +V I L E Sbjct: 486 CRGKGIVKSGTTVSVELQRKLSGIIRRARNRTPDLAKPIKLRILVNPAIIDRLREEDADL 545 Query: 459 VNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKG 492 + ++E + + + +Y V+ V G Sbjct: 546 LISLEKDYNA-QLTFRADPNFHVENYRVIDVETG 578 >UniRef50_B6YQX9 Ribonuclease G n=23 Tax=Bacteroidales RepID=B6YQX9_AZOPC Length = 518 Score = 495 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 144/521 (27%), Positives = 255/521 (48%), Gaps = 30/521 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M L+ Q + + +A+++ + L + E NIY G++ ++ P L AAFVD Sbjct: 1 MISELVIDVQPQIISIAVLEDKNLVEFRKEVRDLSFSVGNIYLGRVKKMMPGLNAAFVDI 60 Query: 61 GAERHGFLPLKEIAREYFPANY----------------------SAHGRPNIKDVLREGQ 98 G E+ FL +++ N +I D+L++G Sbjct: 61 GGEKGAFLHYRDLGGNINSLNTFLKKVFSEKRIPPIGKFLCSSAEVAKDISITDILKQGD 120 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALAS 157 V+VQI KE KG LT+ +S+ G L+++P R IS +I +R LK+ + S Sbjct: 121 NVLVQIVKEPIATKGPRLTSELSIVGRCLIVIPFGDRV-SISLKIQSDKERIRLKQLVCS 179 Query: 158 LELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRA 217 + P+ +IVRT+ GK A L +L +K W + +P LI++E+ ++ Sbjct: 180 I-KPKNFSVIVRTSAKGKQASELDKELKILVKRWNDNIVKLINSKSPSLIYEETGRVLAL 238 Query: 218 FRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIES 277 RD I I++ + R +++ L P S+ +KLY GE P+F ++ I Q++S Sbjct: 239 LRDNFDSSFEHIYINDENMFNEVRDYLS-LIDPQKSNIVKLYKGEFPIFDNFVITKQLKS 297 Query: 278 AFQREVRLPSGGSIVIDSTEALTAIDINSARA---TRGGDIEETAFNTNLEAADEIARQL 334 F + + L +G +VI+ TEA+ ID+NS T + E+ + N+ AA+EIA+QL Sbjct: 298 KFGKIITLKNGAYLVIEHTEAMYVIDVNSGNRLALTANTNQEDVIVDVNMSAAEEIAKQL 357 Query: 335 RLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSP 394 RLRD+GG+IVIDFIDM +++ + + + + +DRA+ + +S+ GL+E++R+R+ P Sbjct: 358 RLRDMGGIIVIDFIDMYEQVNRQKLYDSMCNFMAKDRAKHHVFPLSKVGLMEITRKRIRP 417 Query: 395 SLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNE 454 +L ++ C G GT++ + + + I+ K +E + +A+++ Sbjct: 418 ALDFNAMETCSVPLGKGTIKPSIFFTDMLDEKIKIVVKKMGVKEFSLHIHPYVAAFVKKG 477 Query: 455 KRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEET 495 S + + V I+P+ +E Y +K Sbjct: 478 FFSLNMKWKIKY-SVGIRIIPDQSLEILGYKFFNKKKEGIN 517 >UniRef50_A8FWL8 Ribonuclease, Rne/Rng family n=38 Tax=Gammaproteobacteria RepID=A8FWL8_SHESH Length = 1201 Score = 494 bits (1271), Expect = e-138, Method: Composition-based stats. Identities = 480/1077 (44%), Positives = 604/1077 (56%), Gaps = 36/1077 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EELRVALVDGQ+LYDLDIESPGHEQKKANIYKGKITR+EPSLEAAFVDY Sbjct: 1 MKRMLINATQSEELRVALVDGQQLYDLDIESPGHEQKKANIYKGKITRVEPSLEAAFVDY 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GA+RHGFLPLKEIAREYFP YS GRPNIK+V++EGQEVIVQIDKEERGNKGAALTTFI Sbjct: 61 GADRHGFLPLKEIAREYFPKGYSFQGRPNIKEVVKEGQEVIVQIDKEERGNKGAALTTFI 120 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAGSYLVLMPNNPRAGGISRRIEGD+RTELK A++ LE+P+GMGLIVRTAGVGK + L Sbjct: 121 SLAGSYLVLMPNNPRAGGISRRIEGDERTELKAAMSELEVPQGMGLIVRTAGVGKDSAEL 180 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 +WDL HW AIK+A+E RPAPFLIHQESNVIVRA RDYLR+D+GE+LID+P++ E A Sbjct: 181 KWDLKVLEHHWTAIKEASEGRPAPFLIHQESNVIVRAIRDYLRRDVGEVLIDHPRIFEDA 240 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 +QH+ AL RPDF +IK Y E+PLF+H+QIE+QIESAFQREVRLPSGGSIVID TEALT Sbjct: 241 KQHV-ALVRPDFVDRIKQYDAEVPLFTHFQIETQIESAFQREVRLPSGGSIVIDPTEALT 299 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSARAT+GGDIEETA NTNLEAADE+ARQLRLRDLGGL+VIDFIDMTPVRHQR VE Sbjct: 300 SIDINSARATKGGDIEETALNTNLEAADEVARQLRLRDLGGLVVIDFIDMTPVRHQREVE 359 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 NR+R+AV DRAR+Q+ ISRFGL+EMSRQRL PSL ES+ H+CPRC G GT+R ESL+ Sbjct: 360 NRMRDAVHHDRARVQLGRISRFGLMEMSRQRLRPSLEESAAHLCPRCHGQGTIRGTESLA 419 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 LSILRL+EEEA+KENT ++ A VPV +A++LLNEKR A+ E R D V ++P+ M Sbjct: 420 LSILRLMEEEAIKENTSQIEATVPVDVAAFLLNEKRKAIRITEQRHD-VEVYVIPDPNMT 478 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TP Y V+R RK ++ SY L E + P + E A +P + P+ Sbjct: 479 TPDYRVVRHRKDDQISESSYKLLDQPEAKLYEPRKLERAAPPQPALKGFSAPVKEVEKPS 538 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 + A + + Sbjct: 539 SIKKDVKTESKKDAEPGLISKLFSAISALFKPEEKKEEPKKKPQSNRDSQNRNNRRNTRR 598 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 R+ K + +++ RN R + ++ R QA++Q+ +SR+ A Sbjct: 599 NDNRRNRDDKDQASDKGARNSRNKSADSAKSDKVEKQV-RGKDEQAKRQSRNDSKSRRPA 657 Query: 661 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR 720 + ++ +Q RER +RRN ++ + +A E Q + ET + V + R Sbjct: 658 QESDAESKEQPKQEVARERRQRRNMRRKVRVENEQAQVEETQVLAETPVKAAVSEEKTTR 717 Query: 721 KQRQLNQ--KVRYEQSVAEEAVVAPVVE-----------------ETVAAEPIVQEAPAP 761 +RQ + K + +Q +EA A VE E + Q AP Sbjct: 718 PKRQPRKSNKPKPQQEATQEAQAATQVEAEVSDISLTETVKTETLEAKVEAKVEQTAPVA 777 Query: 762 RTELVKVPLPVVAQTAPEQQEE------NNADNRDNGGMPRRSRRSPRHLRVSGQRRRRY 815 + P+ Q EE ++ + R+ RRSRRSPRHLR +GQRRRR Sbjct: 778 VDSIQTTPVTDADQVEISSSEEVEVEATDDKEQREPREGQRRSRRSPRHLRAAGQRRRRD 837 Query: 816 RDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVP 875 D + S E+ + + V E E Q TEV Sbjct: 838 EDTEGESSSDAAPAFVSNETEVENQANETKAASVAVSTPAQPETPEIPAEDTQKADTEVK 897 Query: 876 VAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVA 935 A E A V + P V + + + Sbjct: 898 SEAT--------KPESTKPEATASVAASAPAKPAVPAKKQAPAKPKTAVKSEAMAAPAKP 949 Query: 936 VAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAV 995 A AE + P + ++ + A+PA V AE + E A Sbjct: 950 AAPVKAEASVASAAPAKPATPVKAETQVKTEASVAAAAPAKPAVQVKAEAPVKTEASVAT 1009 Query: 996 EPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASA 1052 +A AP + + +P + + ++ Sbjct: 1010 AAPAKPVAPAKVEASVKAEAPVKAKASVAAAAPAKPAAPVKAEAPVETEVPAKAKAS 1066 >UniRef50_Q1NUM8 Ribonuclease E and G n=2 Tax=Deltaproteobacteria RepID=Q1NUM8_9DELT Length = 715 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 207/487 (42%), Positives = 306/487 (62%), Gaps = 7/487 (1%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 ++LIN + EE R+AL++ ++ IES + K NIYKG++T +E +L+AAFVD G Sbjct: 223 KLLINTDEPEECRLALLENSKVEGFYIESVSRARIKGNIYKGRVTSVEANLQAAFVDIGL 282 Query: 63 ERHGFLPLKEIAREYFPANYSAH---GRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 E++GFL EI EY+ I+D++++GQEV+V++ KE GNKG +LTT+ Sbjct: 283 EKNGFLSFNEIHPEYYQQEVDPETSWKNLKIQDMVKKGQEVLVEVVKEGSGNKGPSLTTY 342 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAE 178 +SL G +LVLMP + A GISR+I+ ++ R +L+E + L +PEG+G IVRTA + Sbjct: 343 LSLPGRFLVLMPGSDSA-GISRKIDDEEHRNKLREMVEGLNIPEGVGYIVRTASQEITKT 401 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 AL DL F L W I+K +S PAP L+++E N+I R RD+ DI EIL+D E Sbjct: 402 ALSQDLRFLLNLWSEIRKGGQSLPAPSLLYKEQNIISRFLRDHYTSDIREILVDEEDAAE 461 Query: 239 LARQHIAAL-GRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 R + L + +KL+ G P+F Y +E QIE FQ V LPSGGSIVI+ TE Sbjct: 462 QVRNFLQLLPASQRKKTTVKLHQGSQPIFHQYHVEKQIEEMFQPTVPLPSGGSIVINPTE 521 Query: 298 ALTAIDINSAR-ATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 AL AID+NS R +++ D EE+ F N+EAA+E+ARQLR+RDLGGLIV+DFIDM H Sbjct: 522 ALVAIDVNSGRTSSKDRDFEESIFIANMEAAEELARQLRMRDLGGLIVVDFIDMRSAAHT 581 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDN 416 R VE ++RE +++D+A++ S IS+FGL+++SRQ+++ L +S+ CP C G G +R Sbjct: 582 REVEKKVRECMKRDKAKVDFSKISKFGLMQISRQKMAAPLQTTSYKTCPYCEGRGLIRSV 641 Query: 417 ESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPN 476 E+L+LS LR I+ + ++V +P+ +A Y+LN+KR + +E + V Sbjct: 642 ENLALSHLRQIQTGMSRRRAKKVVCQLPMEVAQYILNKKREELLELEKEYGAEIVIEVDA 701 Query: 477 DQMETPH 483 + + Sbjct: 702 AMLPADN 708 >UniRef50_UPI0001C31D95 ribonuclease, Rne/Rng family n=1 Tax=Conexibacter woesei DSM 14684 RepID=UPI0001C31D95 Length = 636 Score = 493 bits (1268), Expect = e-137, Method: Composition-based stats. Identities = 170/640 (26%), Positives = 282/640 (44%), Gaps = 37/640 (5%) Query: 1 MKRMLINATQQEELRVALVD------------------------GQRLYDLDIESPGHEQ 36 MK+ ++ + + E RVAL++ G R+ +L +E G+ Sbjct: 1 MKKQVLVSVDRGETRVALLEATGDVAPAPRTSGRRRRKPANPSAGYRVAELYLERRGNRS 60 Query: 37 KKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPN----IKD 92 NIYKGK+ + LEAAFVD G E++GFL + EI G+ I D Sbjct: 61 IVGNIYKGKVDNVLAGLEAAFVDIGLEKNGFLHVDEIVIPGVETPRRGRGQGKDGLKIHD 120 Query: 93 VLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELK 152 +LR GQEV+VQ+ K+ KGA L+ +++ G Y+V P G+SRR+ +R L+ Sbjct: 121 LLRPGQEVVVQVVKDPLKTKGARLSMELTIPGRYMVYTPQGEGV-GVSRRLPDKERDRLR 179 Query: 153 EALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESN 212 + A L+L +G G I+RTA G E + ++ + K + + K E AP L+ QE++ Sbjct: 180 KEAARLDL-QGGGAIIRTAAFGARREDFEREMQYLFKLNDVLAKRVEETQAPDLVFQEAD 238 Query: 213 VIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIE 272 + +R RD ++D+ K + P+ +++L+ E PLF + +E Sbjct: 239 LSIRVVRDVFSDHFERAVVDDQKQYQRLVSFFTRTA-PELVDRVELWEEEAPLFERFGVE 297 Query: 273 SQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATR---GGDIEETAFNTNLEAADE 329 +I+ R V LPSGG ++ID EALT ID+N+ G +E+T TNLEAA+E Sbjct: 298 REIQGTLTRRVDLPSGGYLIIDYAEALTVIDVNTGSFIGRGRGARLEDTITRTNLEAAEE 357 Query: 330 IARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSR 389 RQLRLRD+GG+IVIDFIDM R++ AV LR+++ +DR + + IS GL+EM+R Sbjct: 358 AVRQLRLRDIGGIIVIDFIDMARARNRDAVLKTLRKSLDEDRTKTFVVEISPLGLVEMTR 417 Query: 390 QRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIAS 449 Q ++ + E CP C G G +R E++++ R + + A + + + + + + Sbjct: 418 QNVTEGVREIMTRHCPTCGGEGVIRSEETIAIDFERRLRDIAKEHEAEALLLQINPRVGA 477 Query: 450 YLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHE-- 507 + + G ++ + H+ + +E + + E Sbjct: 478 VFTGNSAR-ILRQLEEETGKWFHFEGSEGLPLDHFAITFEGSRDEVAERALPFREGDEVL 536 Query: 508 EAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQ 567 + P + + + V A A A Sbjct: 537 VTIVEPHMYNVDDAVAKIDGYIVSVTGGGRHVGEKRLVRIDEVGRTAATATLVGNGADGS 596 Query: 568 PGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQD 607 G + + + +A A + Sbjct: 597 SGGEDSGDSPDGVESTARRRGRRGGRRRSRATADSTAATE 636 >UniRef50_B0SXB4 Ribonuclease, Rne/Rng family n=2 Tax=Alphaproteobacteria RepID=B0SXB4_CAUSK Length = 905 Score = 492 bits (1265), Expect = e-137, Method: Composition-based stats. Identities = 270/911 (29%), Positives = 401/911 (44%), Gaps = 63/911 (6%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLI+A EE RV +VDG R+ + D ES +Q + NIY K+TR+EPSL+AAF++YG Sbjct: 3 KKMLIDAAHAEETRVVVVDGSRVEEFDFESQTRKQLRGNIYLAKVTRVEPSLQAAFIEYG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAH------------------------------------ 85 RHGFL EI +Y+ + Sbjct: 63 GNRHGFLAFNEIHPDYYQIPVADREALMRDDSHDDEDDHDHGRDGDDGDAVDDEEDAVEE 122 Query: 86 ----------GRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPR 135 + I++V+R Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R Sbjct: 123 ELARRKRRLMRKYKIQEVIRRRQIMLVQVVKEERGNKGAALTTYLSLAGRYGVLMPNTAR 182 Query: 136 AGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAI 194 GGISR+I DR LK + L++P+GMGLIVRTAG ++ ++ D + L+ WE I Sbjct: 183 GGGISRKITTITDRKRLKSVVQGLDVPQGMGLIVRTAGAKRTKAEIKRDYEYLLRLWENI 242 Query: 195 KKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSS 254 + AP LI++E +++ RA RD +D+ I ++ + AR + L P + Sbjct: 243 RDNTLHSIAPALIYEEEDLVKRAIRDMYDKDLEGIWVEGEAGYKEARDFMRML-MPSQAK 301 Query: 255 KIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGD 314 K+ Y PLF ++IE + + V L SGG +VI+ TEAL AID+NS +ATR + Sbjct: 302 KVFPYREAAPLFVKHKIEDHLAQIYSPVVPLRSGGYLVINQTEALVAIDVNSGKATRERN 361 Query: 315 IEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARI 374 IE TA TN+EAA+E ARQLRLRDL GLIVIDFIDM ++ RAVE L+++++ DRARI Sbjct: 362 IEATALKTNMEAAEEAARQLRLRDLAGLIVIDFIDMDEGKNNRAVEKILKDSLKDDRARI 421 Query: 375 QISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKE 434 Q+ IS FGL+E+SRQR + E + HVC C GTG VR ES +L+ LR +E EALK Sbjct: 422 QMGKISGFGLMEISRQRRRTGVLEGTTHVCEHCDGTGRVRSVESSALAALRAVEVEALKG 481 Query: 435 NTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEE 494 V V P+ Y+LNEKR+ + ++ + ++ +D + + + R GE Sbjct: 482 -GGAVTLKVSRPVGIYILNEKRAYLLRLQQTH-ALFVTVLVDDSLHQAEHDIDRTELGER 539 Query: 495 TPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPA 554 + + P ++ A E+ P PA Sbjct: 540 PAPQIFAPIE------PDPVYDDEAFEDEDEEDEEEIEVGASEEDDEAPRVARPARAEPA 593 Query: 555 PKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQN 614 A + R + + G+E + +AE E + + + R+ Sbjct: 594 EDDANGRRGRKRRRRGGRRDERDEAPVEAAGDEDEEDADGVERAEGDIEGEDEESRRRRR 653 Query: 615 NRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQA 674 R R RR R + +D R + E+ + D + Sbjct: 654 RRGRRGGRRGGREDGDRPADAFAWTRPRVPFGENAFVWHDPEALDGRNGERRPSGDRPER 713 Query: 675 PRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQK-VRYEQ 733 R +R + E E R R R + Sbjct: 714 TERPEPVEAVVAERAERPERAERGERGGRRGRGRGERGDRTETSADAPRAERTPAPRVDV 773 Query: 734 SVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGG 793 + E A +AP V E A+ V P+ E K ++ E + + Sbjct: 774 ADLEPAPLAPAVIEGPPAD--VWVELPPQDEAPKKARRPRSRGRKATDAETSVEASVEES 831 Query: 794 MPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQD 853 + +P + + E P P P + + + P Sbjct: 832 VAETVEATPAPVDETPLVAADVEVEASVAVQPAP----APEPVMVAPEPVPAPVAAEPDP 887 Query: 854 VQVEEQREQEE 864 ++ E+ + Sbjct: 888 AEILTPPEKPK 898 Score = 69.6 bits (168), Expect = 6e-10, Method: Composition-based stats. Identities = 57/378 (15%), Positives = 96/378 (25%), Gaps = 5/378 (1%) Query: 630 TEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQ 689 + E + ++ + + V + DE + E +++ + Sbjct: 521 DDSLHQAEHDIDRTELGERPAPQIFAPIEPDPVYDDEAFEDEDEEDEEEIEVGASEEDDE 580 Query: 690 AQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYE-QSVAEEAVVAPVVEET 748 A + A+ E + R R + R+ + V E+A E Sbjct: 581 APRVARPARAEPAEDDANGRRGRKRRRRGGRRDERDEAPVEAAGDEDEEDADGVERAEGD 640 Query: 749 VAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVS 808 + E R R G P L Sbjct: 641 IEGEDEESRRRRRRRGRRGGRRGGREDGDRPADAFAWTRPRVPFGENAFVWHDPEALDGR 700 Query: 809 GQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQ 868 RR D T+ P P+ A + R + E E Sbjct: 701 NGERRPSGDRPERTERPEPVEAVVAERAERPERAERGERGGRRGRGRGERGDRTETSADA 760 Query: 869 PMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQV 928 P P + + E P+ + + Sbjct: 761 PRAERTPAPRVDVADLEPAPLAPAVIEGPPADVWVELPPQDEAPKKARRPRSRGRKATDA 820 Query: 929 ITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQP----AAPVVAE 984 T + +V + VAE E P +ET + VE V +P +P PV A Sbjct: 821 ETSVEASVEESVAETVEATPAPVDETPLVAADVEVEASVAVQPAPAPEPVMVAPEPVPAP 880 Query: 985 VAAEVETVAAVEPEVTVE 1002 VAAE + + P + Sbjct: 881 VAAEPDPAEILTPPEKPK 898 Score = 58.4 bits (139), Expect = 2e-06, Method: Composition-based stats. Identities = 51/355 (14%), Positives = 78/355 (21%), Gaps = 11/355 (3%) Query: 707 TEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELV 766 E + + E +EE AP V AEP +A R Sbjct: 546 APIEPDPVYDDEAFEDEDEEDEEEIEVGASEEDDEAPRVARPARAEPAEDDANGRRGRKR 605 Query: 767 KVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPM 826 + + E ++ ++ R+ +RRRR R R + Sbjct: 606 RRRGGRRDERDEAPVEAAGDEDEEDADGVERAEGDIEGEDEESRRRRRRRGRRGGRRG-- 663 Query: 827 PLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSA 886 P A R P V + + + + + + P Sbjct: 664 -GREDGDRPADAFAWTRPRVPFGENAFVWHDPEAL-DGRNGERRPSGDRPERTERPEPVE 721 Query: 887 PVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEP 946 VV E A E + + P+ V Sbjct: 722 AVVAERAERPERAERGERGGRRGRGRGERGDRTETSADAPRAERTPAPRVDVA------- 774 Query: 947 VVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHA 1006 +EP + E V P+ A A + E Sbjct: 775 DLEPAPLAPAVIEGPPADVWVELPPQDEAPKKARRPRSRGRKATDAETSVEASVEESVAE 834 Query: 1007 TAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE 1061 T T AP E A + A P P E Sbjct: 835 TVEATPAPVDETPLVAADVEVEASVAVQPAPAPEPVMVAPEPVPAPVAAEPDPAE 889 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 62/375 (16%), Positives = 91/375 (24%), Gaps = 8/375 (2%) Query: 659 QAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQP 718 QAE E+ AP+ + E + EE+ +E+ P Sbjct: 526 QAEHDIDRTELGERPAPQIFAPIEPDPVYDDEAFEDEDEEDEEEIEVGASEEDDEAPRVA 585 Query: 719 RRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAP 778 R + + + + + +E A + Sbjct: 586 RPARAEPAEDDANGRRGRKRRRRGGRRDERDEAPVEAAGDEDEEDADGVERAEGDIEGED 645 Query: 779 EQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEL- 837 E+ GG R R R P + + E Sbjct: 646 EESRRRRRRRGRRGGRRGGREDGDRPADAFAWTRPRVPFGENAFVWHDPEALDGRNGERR 705 Query: 838 ASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPV--VSAPVVEEVAGV 895 SG R P + V E+ E+ E + E A Sbjct: 706 PSGDRPERTERPEPVEAVVAERAERPERAERGERGGRRGRGRGERGDRTETSADAPRAER 765 Query: 896 VEAP---VQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQE 952 AP V EP P E P A + E Sbjct: 766 TPAPRVDVADLEPAPLAPAVIEGPPAD-VWVELPPQDEAPKKARRPRSRGRKATDAETSV 824 Query: 953 ETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTR 1012 E + E V ET E A + AA V E + V+ A EP + AP+ Sbjct: 825 EASVEESVAETVEATPAPVDETPLVAADVEVEASVAVQPAPAPEPVMVAPEP-VPAPVAA 883 Query: 1013 APAPEYVPEAPRHSD 1027 P P + P Sbjct: 884 EPDPAEILTPPEKPK 898 >UniRef50_B0K422 Ribonuclease, Rne/Rng family n=12 Tax=Thermoanaerobacterales RepID=B0K422_THEPX Length = 474 Score = 491 bits (1264), Expect = e-137, Method: Composition-based stats. Identities = 149/490 (30%), Positives = 260/490 (53%), Gaps = 17/490 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKR++++ + ++AL++ +L + E + NIYKGKI + ++AAFVD Sbjct: 1 MKRLILDIDEN-LSQIALLENGKLKEYHPEKRDGKNILGNIYKGKIQNVLKGMQAAFVDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++ FL ++ + +I VL+ GQ ++VQ+ KE G K +T I Sbjct: 60 GIGKNAFLFFDDVL------FQQENLPKSITQVLKPGQPIMVQVSKEAVGMKNPRVTANI 113 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 SL G Y+VLMPN GIS RIE + +R L+E + L PEG+G+IVRTA + + + Sbjct: 114 SLPGKYVVLMPNVDYI-GISHRIEEEVERKRLQEIVKKL-KPEGIGIIVRTAALEATEQQ 171 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 ++ DL ++ +E I+K ++ P P LI++E + ++ RD L ++ EI++++ + E Sbjct: 172 IREDLEELIRLYEKIQKDFQNAPLPSLIYKEEDFAIKYLRDLLSDEVDEIVVNDKEEYEN 231 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 ++++ +G+ I + E L Y + Q++ +++V L SGG ++ID TEAL Sbjct: 232 IKRYLKNVGK----ENISVTYEEGDLLGIYGADFQVDKLLEKKVWLKSGGFVIIDQTEAL 287 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+N+ + +EET + TNLEAA+EIA QL+LRD+GG+I+IDFIDM +R + Sbjct: 288 TVIDVNTGKYVGKSSLEETIYKTNLEAAEEIALQLKLRDIGGIIIIDFIDMKNENFKRDL 347 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 + +++DR + + ++ GL+EM+R+R+ +G CP C G G V E + Sbjct: 348 LEFFKRELQKDRTKCTVLGYTQLGLVEMTRKRVRSQVGSYLKEKCPICEGEGMVYSTEYI 407 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 + IE N ++++ + + + V +V ++ Sbjct: 408 YRRLRNNIERVLRHVNARKIYIKGNDKVVKIASE---KGIIKFYKEKFNVDLELVVDNNK 464 Query: 480 ETPHYHVLRV 489 + H+ + Sbjct: 465 KYGHFEIEFE 474 >UniRef50_C1DR24 Ribonuclease E n=27 Tax=Gammaproteobacteria RepID=C1DR24_AZOVD Length = 1139 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 436/1065 (40%), Positives = 557/1065 (52%), Gaps = 8/1065 (0%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKRMLINATQ EELRVALVDGQRLYDLDIES EQKKANIYKG+ITR+EPSLEAAFVD+ Sbjct: 1 MKRMLINATQPEELRVALVDGQRLYDLDIESGAREQKKANIYKGRITRVEPSLEAAFVDF 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 GAERHGFLPLKEI+REYF S GR NIKDVL EGQEVIVQ++KEERGNKGAALTTFI Sbjct: 61 GAERHGFLPLKEISREYFKK--SPEGRINIKDVLSEGQEVIVQVEKEERGNKGAALTTFI 118 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG YLVLMPNNPRAGGISRRIEG++R EL+EAL L++P MGLIVRTAG+G+S+E L Sbjct: 119 SLAGRYLVLMPNNPRAGGISRRIEGEERNELREALNGLDVPADMGLIVRTAGLGRSSEEL 178 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 QWDL + ++ W AIK+A+ R PFLI+QESNVI+RA RDYLRQDIGE+LID+ + E A Sbjct: 179 QWDLDYLVQLWTAIKEASLDRSPPFLIYQESNVIIRAIRDYLRQDIGEVLIDSVEAQEEA 238 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 I + P ++SKIKLY +PLF+ +QIESQIE+AFQREV+LPSGGSIVID TEAL Sbjct: 239 LSFIRQV-MPQYASKIKLYEDSVPLFNRFQIESQIETAFQREVKLPSGGSIVIDPTEALV 297 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +IDINSARAT+GGDIEETA TNLEAA+EIARQLRLRD+GGLIVIDFIDMTP ++QRAVE Sbjct: 298 SIDINSARATKGGDIEETALQTNLEAAEEIARQLRLRDIGGLIVIDFIDMTPAKNQRAVE 357 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 +++REA+ DRAR+QI ISRFGLLEMSRQRL PSLGE+S VCPRCSG G +RD ESLS Sbjct: 358 DKMREALEADRARVQIGRISRFGLLEMSRQRLRPSLGETSGIVCPRCSGQGIIRDVESLS 417 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 L+ILRLIEEEALK+ T EV A VP+P+A++LLNEKR+++ IE R VR VI+P+D ME Sbjct: 418 LAILRLIEEEALKDRTAEVRAQVPIPVAAFLLNEKRNSITKIELRTR-VRIVILPSDHME 476 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 TPH+ V R+R + ++ + ++ A+ T + Sbjct: 477 TPHFEVQRLRDDSPEVQSAQSSYEMTPAEVEEVQLVSSTRTLVRQEAAVKTAPPRNALVP 536 Query: 541 PTPAEPAAPVVAPAPKAAP---ATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPK 597 PAAP AP P + EE + Sbjct: 537 VPAEIPAAPAAAPHPALELNLFKGLVKSLVSLFAGKEIAKPVVAERLVEERLTRSSEERR 596 Query: 598 AEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESR 657 + + R+++ R R R E R R R E R R+ + + Sbjct: 597 SSRQQNRRRESRHGRDEERSRPREERQLREVREERVPRPAREERPAREERHPSEFVEPRE 656 Query: 658 QQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQ 717 + E+ + R+ + + +E + + + +E Sbjct: 657 PRESRRERPPREERAPREERQAVETMEPREPREPRETRRERPPREERRRELREPLDIQEI 716 Query: 718 PRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTA 777 + + + E+ E V I +E P E+ + + Sbjct: 717 QESPREERTVRPPREELPQREERQPHEERPVVNEPKIPEEQVLPHEEIQEEEAEASGEER 776 Query: 778 PEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEL 837 P ++ + R + S + + T S +P A+ E Sbjct: 777 PRRRSRGQRRRSNRRERQRDGQGSEIEGVEEDEAAAVAAESTAATVSAVPAQADEATAEA 836 Query: 838 ASGKVWIR-YPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVV 896 ++ P V +E V V E V A E VA Sbjct: 837 STTASPPSGQPAVEETQPAIETVAIAAPVAETAPVEIPQPILQPEQVQPAGAEEPVAEPS 896 Query: 897 EAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETAD 956 EA A+P E TT P + + ++ E T Sbjct: 897 EALQVPAQPVQEPPATTEPSAEVEVPRSTARAANDPREVRRRKREAAEAEAKRAAEATKA 956 Query: 957 IEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAP 1016 E +A V + A A E+ +E + + A Sbjct: 957 AEAAKIAEASAIAAAAAVTETRAEAGPVPVASTPEAPEERIEIPLEQPRTASEPSPASME 1016 Query: 1017 EYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPVE 1061 + + S A AA A +P+E Sbjct: 1017 SVELPSEQVSPEPEAFSTVAEPVEAPFELIQPEVPAAVAAEEPIE 1061 Score = 71.5 bits (173), Expect = 2e-10, Method: Composition-based stats. Identities = 76/557 (13%), Positives = 141/557 (25%), Gaps = 4/557 (0%) Query: 494 ETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAP 553 + ++ + + R+R + V P Sbjct: 576 KPVVAERLVEERLTRSSEERRSSRQQNRRRESRHGRDEERSRPREERQLREVREERVPRP 635 Query: 554 APKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQ 613 A + PA + R + EE P E+ +P ++ R+ R+ Sbjct: 636 AREERPAREERHPSEFVEPREPRESRRERPPREERAPREERQAVETMEPREPREPRETRR 695 Query: 614 NNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQ 673 RR+ R + ++ RE RQ E + Sbjct: 696 ERPPREERRRELREPLDIQEIQESPREERTVRPPREELPQREERQPHEERPVVNEPKIPE 755 Query: 674 APRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQ 733 + ++ + +E Q + +E + + + ++ Sbjct: 756 EQVLPHEEIQEEEAEASGEERPRRRSRGQRRRSNRRERQRDGQGSEIEGVEEDEAAAVAA 815 Query: 734 SVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGG 793 V A + A A P + +T + Sbjct: 816 ESTAATVSAVPAQADEATAEASTTASPPSGQPAVEETQPAIETVAIAAPVAETAPVEIP- 874 Query: 794 MPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQD 853 + P ++ +G P+ A+ E ++ R D Sbjct: 875 ---QPILQPEQVQPAGAEEPVAEPSEALQVPAQPVQEPPATTEPSAEVEVPRSTARAAND 931 Query: 854 VQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETT 913 + +R++E + AA ++ A V A P P Sbjct: 932 PREVRRRKREAAEAEAKRAAEATKAAEAAKIAEASAIAAAAAVTETRAEAGPVPVASTPE 991 Query: 914 HPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEV 973 PE EQP+ +E A + V +E V E + + E VE ++ Sbjct: 992 APEERIEIPLEQPRTASEPSPASMESVELPSEQVSPEPEAFSTVAEPVEAPFELIQPEVP 1051 Query: 974 VAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTF 1033 A A + + + V E E E V EA + Sbjct: 1052 AAVAAEEPIETTSEQSAPVEEERSEDRKEQQTLDLLPVAGQPEELVDEAQIAPGVENEEV 1111 Query: 1034 AFEGKGAAGGHTATHHA 1050 A + A AT A Sbjct: 1112 AEPRRKEAESGNATAEA 1128 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 59/422 (13%), Positives = 106/422 (25%), Gaps = 4/422 (0%) Query: 603 ERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEV 662 + Q+ + + R R E + + + E +E +A Sbjct: 714 QEIQESPREERTVRPPREELPQREERQPHEERPVVNEPKIPEEQVLPHEEIQEEEAEASG 773 Query: 663 TEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQ 722 E+ R Q R R R+ D + + + + + T P Q Sbjct: 774 EERPRRRSRGQRRRSNRRERQRDGQGSEIEGVEEDEAAAVAAESTAATVSAVPAQADEAT 833 Query: 723 RQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQE 782 + + P +E A P+ + AP + + P V A E Sbjct: 834 AEASTTASPPSGQPAVEETQPAIETVAIAAPVAETAPVEIPQPILQPEQVQPAGAEEPVA 893 Query: 783 ENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKV 842 E + + + + R R P + A + + + Sbjct: 894 EPSEALQVPAQPVQEPPATTEPSAEVEVPRSTARAANDPREVRRRKREAAEAEAKRAAEA 953 Query: 843 WIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQV 902 + + + P + E P Sbjct: 954 TKAAEAAKIAEASAIAAAAAVTETRAEAGPVPVASTPEAPEERIEIPLEQPRTASEPSPA 1013 Query: 903 AEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVE 962 + E+ A T V E+ + Q A EP E T++ VE Sbjct: 1014 SMESVELPSEQVSPEPEAFSTVAEPV--EAPFELIQPEVPAAVAAEEPIETTSEQSAPVE 1071 Query: 963 TAEVVVAEPEVVAQ--PAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVP 1020 + + P A E+ E + VE E E A A A + Sbjct: 1072 EERSEDRKEQQTLDLLPVAGQPEELVDEAQIAPGVENEEVAEPRRKEAESGNATAEAKLT 1131 Query: 1021 EA 1022 + Sbjct: 1132 DE 1133 Score = 68.0 bits (164), Expect = 2e-09, Method: Composition-based stats. Identities = 56/490 (11%), Positives = 105/490 (21%), Gaps = 4/490 (0%) Query: 505 LHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAA 564 E + E + P + V Sbjct: 647 HPSEFVEPREPRESRRERPPREERAPREERQAVETMEPREPREPRETRRERPPREERRRE 706 Query: 565 PAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRD 624 +P + + + + + Q + + + K + E ++ Sbjct: 707 LREPLDIQEIQESPREERTVRPPREELPQREERQPHEERPVVNEPKIPEEQVLPHEEIQE 766 Query: 625 TRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRN 684 +E + R +R RR++ ++ + + E E+ A Sbjct: 767 EEAEASGEERPRRRSRGQRRRSNRRERQRDGQGSEIEGVEEDEAAAVAAESTAATVSAVP 826 Query: 685 DDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPV 744 +A EA E+ + V Q + + V P Sbjct: 827 AQADEATAEASTTASPPSGQPAVEETQPAIETVAIAAPVAETAPVEIPQPILQPEQVQPA 886 Query: 745 VEETVAAEPIV--QEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSP 802 E AEP Q P E P P D R+ R + + Sbjct: 887 GAEEPVAEPSEALQVPAQPVQEPPATTEPSAEVEVPRSTARAANDPREVRRRKREAAEAE 946 Query: 803 RHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQ 862 + + V E +G V + P++ + Sbjct: 947 AKRAAEATKAAEAAKIAEASAIAAAAAVTETRAE--AGPVPVASTPEAPEERIEIPLEQP 1004 Query: 863 EEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAV 922 + V E V P E I Sbjct: 1005 RTASEPSPASMESVELPSEQVSPEPEAFSTVAEPVEAPFELIQPEVPAAVAAEEPIETTS 1064 Query: 923 TEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVV 982 + V E ++ PV EE D ++ E + + Sbjct: 1065 EQSAPVEEERSEDRKEQQTLDLLPVAGQPEELVDEAQIAPGVENEEVAEPRRKEAESGNA 1124 Query: 983 AEVAAEVETV 992 A + Sbjct: 1125 TAEAKLTDEQ 1134 >UniRef50_Q0BVH1 Ribonuclease E n=2 Tax=Acetobacteraceae RepID=Q0BVH1_GRABC Length = 949 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 217/708 (30%), Positives = 325/708 (45%), Gaps = 21/708 (2%) Query: 74 AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 + + I++V++ Q +++Q+ KEERGNKGAAL+T+ISLAG Y VLMPN+ Sbjct: 238 KEDRERRSPRFLRNYKIQEVIKRRQILLIQVVKEERGNKGAALSTYISLAGRYCVLMPNS 297 Query: 134 PRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWE 192 PR GG+SR+I DR LK+ + +LE+P GMG+IVRTAG + + D + L+ W+ Sbjct: 298 PRGGGVSRKITSATDRRRLKDIIGALEIPRGMGIIVRTAGGNRPKAEIMRDCEYLLRLWD 357 Query: 193 AIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDF 252 I+ AP LIH+E+++I RA RD I E+L+D + AR + L P Sbjct: 358 DIRDITLRSSAPALIHEEASLIKRAIRDVYTSTIEEVLVDGEEGWRAARDIMRML-MPSH 416 Query: 253 SSKIKLYTGE-----IPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSA 307 + K+ + + PLF+HYQ+ESQ+++ V L SGG +VI+ EAL AID+NS Sbjct: 417 ARKVICWNADKERAGQPLFAHYQVESQLDAILAPNVSLKSGGYLVINQAEALVAIDVNSG 476 Query: 308 RATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAV 367 R+T+ IEETA TNLEAADE+ARQLRLRDL GLIVIDFIDM +H VE RL+EA+ Sbjct: 477 RSTKERGIEETALRTNLEAADEVARQLRLRDLAGLIVIDFIDMESRKHNGMVERRLKEAL 536 Query: 368 RQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLI 427 + DRARIQ+ IS FGLLEMSRQRL PSL E+S CP C+G G VR E S+ +LR I Sbjct: 537 KNDRARIQVGQISSFGLLEMSRQRLRPSLTETSMITCPHCNGLGLVRTTEGASVHVLRAI 596 Query: 428 EEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVL 487 EEE + E+ +A Y+LN +R + +E+R G++ + + Q + Sbjct: 597 EEEGARRRYAEIMVHAAADVAFYILNNRRDFLATLESRF-GMKVLFSADTQFSGSQLRIE 655 Query: 488 RVRKGEETPTLSYMLP---KLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPA 544 ++R + L + A A A+P A Sbjct: 656 KIRARAMEDVVRTPLIGVADPQPSVAGDLYDFADASDGFATFEAAPVAALPVAVQAEPVG 715 Query: 545 EPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPER 604 +A G R + + + + + Sbjct: 716 TAEEGNNGGRLPSAEGDSEPGPDDGERRRRRRRRRRGNRRNDGAENGMDARSEQDENGNP 775 Query: 605 QQDRRKPRQNNRR------DRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQ 658 ++ R + + E E S + + + QA + Sbjct: 776 VEEGEGVRHGDANTSALPVETTELTVAGVASKETSAETQGDAIDGTQAVSGEFGDEFAED 835 Query: 659 QAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKA---LNVEEQSVQETEQEERVRP 715 R ++ P + + A ++ V + ++ +R Sbjct: 836 SRPRRRGRRGGRGRRQPAQANGHDAGEVAYTGPTPADPFGQQPLDVFDVMDGIEQPMIRD 895 Query: 716 VQ-PRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPR 762 + + + + + + E V E P + + I AP R Sbjct: 896 GKVDQGSRSERHPDLVPEPVVVSEEQAEPYIAPPIQPVVIEDTAPRAR 943 Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 42/86 (48%), Positives = 57/86 (66%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLI+A+ EE RV ++DG RL D D+E+ +Q K NIY K+ R+EPSL+AAFV+YG Sbjct: 51 KKMLIDASHAEETRVVVMDGNRLEDFDVEAASRKQIKGNIYLAKVVRVEPSLQAAFVEYG 110 Query: 62 AERHGFLPLKEIAREYFPANYSAHGR 87 RHGFL EI +Y+ + R Sbjct: 111 GNRHGFLAFSEIHPDYYQIPVADRQR 136 >UniRef50_D1I512 Whole genome shotgun sequence of line PN40024, scaffold_57.assembly12x (Fragment) n=2 Tax=Vitis vinifera RepID=D1I512_VITVI Length = 934 Score = 489 bits (1258), Expect = e-136, Method: Composition-based stats. Identities = 148/579 (25%), Positives = 259/579 (44%), Gaps = 69/579 (11%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG-- 61 +LIN++ R+A+++ L +L +E + ++Y G +T++ P + AFV+ G Sbjct: 344 ILINSSICTMQRIAVLEDGSLVELLLEPVKSNVQCDSVYLGVVTKLVPHMGGAFVNIGIQ 403 Query: 62 --------------------------------AERHGFLP------LKEIAREYFPANYS 83 + FLP + Sbjct: 404 FAHDDFEEHEVEDDFDVLIKKDLNGSIVDHDSETINNFLPVELEKGFHDSQLPPLLEMKD 463 Query: 84 AHGRPNIKDV---LREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGIS 140 + +++ +++G ++IVQ+ KE G KG LT + L + VL+ R G+S Sbjct: 464 SRQAYTVENKWAQVQKGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTCCNRI-GVS 522 Query: 141 RRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAES 200 ++I G +RT L+ +L P+G GL VRT G + E LQ DL L W+ I + A+S Sbjct: 523 KKISGVERTRLRVIAKTL-QPKGFGLTVRTVAAGHTLEELQKDLEGLLSTWKNIVEHAKS 581 Query: 201 RP----------APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 P ++H+ + +DY + + +++D+P+ ++ + P Sbjct: 582 AALAADEGVEGAIPVILHRAMGQTLSVVQDYFNEKVESMVVDSPRTYHEVTNYLQEIA-P 640 Query: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARA- 309 D +++LY +PLF + IE +I + + V LP+GGS+VI+ TEAL +ID+N Sbjct: 641 DLCDRVELYNKRVPLFDEFNIEEEINNILSKRVPLPNGGSLVIEQTEALVSIDVNGGHGM 700 Query: 310 -TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVR 368 G E+ + NL AA +IAR+LRLRD+GG+IV+DFIDM ++R V +++AV Sbjct: 701 LGNGTSQEKAILDVNLAAAKQIARELRLRDIGGIIVVDFIDMLDDSNKRLVYEEVKKAVE 760 Query: 369 QDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIE 428 +DR+ +++S +SR GL+E++R+R+ PS+ C C GTG V E+ I + I Sbjct: 761 RDRSMVKVSELSRHGLMEITRKRVRPSVTFMISEPCSCCHGTGRVEALETSFSKIEQEIC 820 Query: 429 EEALKENTQ----------EVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 + +V + +YL + KR+ + I + V ++ Sbjct: 821 RLLAMTEEKADPENPNSWPRFILMVDRFMCNYLTSGKRTRLA-ILSSSLKVWILLKVARG 879 Query: 479 METPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEE 517 + V + + + A Sbjct: 880 FTRGAFEVKPFTDDKVNISSHQGPISMLRPTEAGTYNPR 918 >UniRef50_B8GWM7 Ribonuclease E n=6 Tax=Caulobacteraceae RepID=B8GWM7_CAUCN Length = 898 Score = 487 bits (1252), Expect = e-135, Method: Composition-based stats. Identities = 266/892 (29%), Positives = 379/892 (42%), Gaps = 65/892 (7%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEA------ 55 K+MLI+A EE RV +VDG R+ + D ES +Q + NIY K+TR+EPSL+A Sbjct: 3 KKMLIDAAHAEETRVVVVDGTRVEEFDFESQTRKQLRGNIYLAKVTRVEPSLQAAFIEYG 62 Query: 56 -------AFVDY-------------------------------------------GAERH 65 AF + G +R Sbjct: 63 GNRHGFLAFNEIHPDYYQIPVADREALMRDDSGDDEDDTPISRRASGGDDEDDVNGGDRA 122 Query: 66 GFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGS 125 ++ E + I++V+R Q ++VQ+ KEERGNKGAALTT++SLAG Sbjct: 123 VDDDDDDVEEELARRKRRLMRKYKIQEVIRRRQIMLVQVVKEERGNKGAALTTYLSLAGR 182 Query: 126 YLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDL 184 Y VLMPN R GGISR+I DR LK + SL++P+GMGLIVRTAG ++ ++ D Sbjct: 183 YGVLMPNTARGGGISRKITAVTDRKRLKSVVQSLDVPQGMGLIVRTAGAKRTKAEIKRDY 242 Query: 185 SFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHI 244 + L+ WE I++ AP LI++E +++ RA RD +D+ I ++ + AR + Sbjct: 243 EYLLRLWENIRENTLHSIAPALIYEEEDLVKRAIRDMYDKDLDGIWVEGDAGYKEARDFM 302 Query: 245 AALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDI 304 L P + K+ Y PLF +IE + + V L SGG +VI+ TEAL AID+ Sbjct: 303 RML-MPSQAKKVFNYRDPTPLFVKNKIEDHLAQIYSPVVPLRSGGYLVINQTEALVAIDV 361 Query: 305 NSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLR 364 NS +ATR +IE TA TN EAA+E ARQLRLRDL GLIVIDFIDM ++ R VE L+ Sbjct: 362 NSGKATRERNIEATALKTNCEAAEEAARQLRLRDLAGLIVIDFIDMDEAKNNRTVEKVLK 421 Query: 365 EAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSIL 424 +A++ DRARIQ+ IS FGL+E+SRQR + E + HVC C GTG VR ES +L+ L Sbjct: 422 DALKDDRARIQMGKISGFGLMEISRQRRRTGVLEGTTHVCEHCEGTGRVRSVESSALAAL 481 Query: 425 RLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHY 484 R +E EALK + V V + Y+LNEKR + + T G+ +V +D + Sbjct: 482 RAVEAEALKG-SGSVILKVSRSVGLYILNEKRDYLQRLLTTH-GLFVSVVVDDSLHAGDQ 539 Query: 485 HVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPA 544 + R GE + ++ ++E E T T Sbjct: 540 EIERTELGERIAVAPPPFVEEDDDFDPNAYDDEEEEDDVILDDEDDTDREDTDDDDATTR 599 Query: 545 EPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPER 604 + A K G G ++ E + Sbjct: 600 KSARDDERGDRKGRRGRRDRNRGRGRRDERDGETESEDEDVVAEGADEDRGEFGDDDEGG 659 Query: 605 QQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNR---RQAQQQTAETRESRQQAE 661 ++ RR+ R+ RR E D ++ R N RQ E Sbjct: 660 RRRRRRGRRGGRRGGREDGDRPTDAFVWIRPRVPFGENVFTWHDPAALVGGGESRRQAPE 719 Query: 662 VTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRK 721 A T + R ER R ++ + ++ +E V E E Sbjct: 720 PRVDAATEAAPRPERAEREERPGRERGRRGRDRGRRQRDEAPVAEMTSVESATVEAAEPF 779 Query: 722 QRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQ 781 + + A+ V P VEE + TE + V + A E Sbjct: 780 EAPILAPPVIAGPPADVWVELPEVEEAPKKPKRSRARGKKATETSVEAIDTVTEVAAEAP 839 Query: 782 EENNADNRDNGGMPRRS--RRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVA 831 A+ P +P V E P + P Sbjct: 840 APETAEPEAVEVAPPAPTVEAAPEPGPVVEAVEEAQPAEPDPNEITAPPEKP 891 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 29/181 (16%), Positives = 47/181 (25%), Gaps = 2/181 (1%) Query: 793 GMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQ 852 G RR PR + R R ER + + Sbjct: 711 GESRRQAPEPRVDAATEAAPRPERAEREERPGRERGRRGRDRGRRQRDEAPVAEMTSVES 770 Query: 853 DVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEV--V 910 + + + P++ P +E ++ + E E Sbjct: 771 ATVEAAEPFEAPILAPPVIAGPPADVWVELPEVEEAPKKPKRSRARGKKATETSVEAIDT 830 Query: 911 ETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAE 970 T A T +P+ + + A E A + PVVE EE E + Sbjct: 831 VTEVAAEAPAPETAEPEAVEVAPPAPTVEAAPEPGPVVEAVEEAQPAEPDPNEITAPPEK 890 Query: 971 P 971 P Sbjct: 891 P 891 >UniRef50_C3W9J7 Ribonuclease G and E n=1 Tax=Fusobacterium mortiferum ATCC 9817 RepID=C3W9J7_FUSMR Length = 488 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 161/483 (33%), Positives = 262/483 (54%), Gaps = 4/483 (0%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M +++IN + + R A+++ +++ ++ IE + ANIYKGK+ + P +E+AFV+ Sbjct: 1 MNQIVINIDEF-QSRAAIIEDEKVVEVLIEREEERRINANIYKGKVANVLPGMESAFVNI 59 Query: 61 GAERHGFLPLKEIAREYFP-ANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G E++ FL + ++ + + I+D+L G EV+VQ+ E RG KGA +TT Sbjct: 60 GLEKNAFLYVNDLREFEEKYLDGICNSERPIEDILTVGDEVVVQVLSEPRGTKGARVTTH 119 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ++ G YLVLMPNN IS++I+ ++ E + PE MG+I+RTA GKS Sbjct: 120 YTIPGKYLVLMPNNNHI-AISKKIKEEEERNRLEEIVRDLKPENMGVIIRTAAQGKSIFH 178 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + ++ + +K WE I+K + ++++++ ++ RD +I E++IDN +V Sbjct: 179 FEREMEYLVKKWEDIEKKTSTAKIGEVLYKDNGIVATVLRDIFSNEIDELVIDNEEVYWE 238 Query: 240 ARQHIAALGRPDFSSKIKLY-TGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 +I A +KIKLY EI +F Y IE +IE+A + EVRL GG +VI TEA Sbjct: 239 VIDYINAFSEKTLKTKIKLYNDDEIGIFERYGIEKEIENALKEEVRLECGGYLVIQKTEA 298 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 L +ID+N+ + T ++E+T NTNLEAA EI RQLRLR+LGG+I+IDFIDM + Sbjct: 299 LISIDVNTGKNTGSYNLEQTVLNTNLEAAREIPRQLRLRNLGGIIIIDFIDMRLEEDKLK 358 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 V L + + +DR + I H + GL+EM+R+R L CP C GTG ++ +S Sbjct: 359 VLEALEQNLSKDRIKNNIVHFTDLGLIEMTRKRTGKPLYNYFQERCPMCEGTGKIKSKDS 418 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 + ++ I+E A E+ + I+ + V + + + Sbjct: 419 VIHEMMTEIKECAKDEDINIIKVILSKKLKIAFKELYFDFVEDFVKNRKKKIILEENSQN 478 Query: 479 MET 481 + Sbjct: 479 DYS 481 >UniRef50_C9LKU5 Cytoplasmic axial filament protein n=1 Tax=Dialister invisus DSM 15470 RepID=C9LKU5_9FIRM Length = 472 Score = 483 bits (1243), Expect = e-134, Method: Composition-based stats. Identities = 153/488 (31%), Positives = 251/488 (51%), Gaps = 23/488 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M R +I + +E +A+ +L DL+IE + + IYKG + I P+++ FVD Sbjct: 1 MNR-VILSDSTDETILAVTRQHKLVDLEIEQQINTEIVGCIYKGIVKNIVPAVDGIFVDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++ FL K++ E K EG ++ Q+ K + KGA +T I Sbjct: 60 GIGKNAFLRRKDLLNE--------------KRFPTEGSPILAQVIKSDTDMKGALITEKI 105 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 S+ G Y V + G+S++I + R LKE + E MGLI+RTA + Sbjct: 106 SMLGKYAVTLSGTGYI-GVSKKIRSESVRKRLKEIGKEI-CAEHMGLIIRTAAENADMDE 163 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + D++ ++W+ I+K +P L+++ES++IV+A RDY+ + ++ DN K+ E Sbjct: 164 FRKDITRLKENWDIIQKRFRMEKSPTLLYRESDIIVKALRDYVNKGTEILITDNRKIYER 223 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + + KI LY +PL +IE QI F+R V LPSGGS++I+ TEAL Sbjct: 224 ICK-LNESEHTIEPDKISLYKERMPLLKKEEIEEQIHLLFKRRVELPSGGSLIIEDTEAL 282 Query: 300 TAIDINSARATRGG-DIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 T ID+NS R G EE + N EAA EIARQ+RLR +GG+I+IDFIDM ++ Sbjct: 283 TVIDVNSGAFNRQGIPHEEAVYLINQEAAIEIARQVRLRGIGGMILIDFIDMQKENQKKD 342 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 + L+ +++D+ + + ++ GL+EM+R+R + SL ++ +CP C+GTG + +S Sbjct: 343 IVGILQRELKKDKVKSIVCGMTSLGLVEMTRKRTTHSLIKNYCDICPICNGTGHILSVQS 402 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 + I R +E +++ +A+ L E++ + +I ND Sbjct: 403 VIQQIHRELETVKRYGGARDLVIRCHPEVAARLKEEQK---AGYFMKYFNREIMIEENDH 459 Query: 479 METPHYHV 486 + Y V Sbjct: 460 LNREVYSV 467 >UniRef50_C5CEM0 Ribonuclease, Rne/Rng family n=1 Tax=Kosmotoga olearia TBF 19.5.1 RepID=C5CEM0_KOSOT Length = 481 Score = 482 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 146/466 (31%), Positives = 245/466 (52%), Gaps = 19/466 (4%) Query: 5 LINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAER 64 ++ ++ ++E+R+A++D ++ ++ E +E NIY GKI + PSLEAAFV+ G + Sbjct: 12 IVFSSLEDEVRIAILDEGKIQEVFFEEMDNESYMGNIYLGKIENVVPSLEAAFVNIGIGK 71 Query: 65 HGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAG 124 +GFL K+ L +G++V+VQ+ K+ G+KG LT IS+ G Sbjct: 72 NGFLRFKDTRNN---------------QKLEKGKKVLVQVKKDPIGSKGPQLTLKISIPG 116 Query: 125 SYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDL 184 LV MP + GIS++I E ++A + G+I RTA G + L+ +L Sbjct: 117 RCLVYMPFSKHV-GISKKITDQAERERLISIAKGIIENDEGIIFRTAANGVGEDTLREEL 175 Query: 185 SFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHI 244 W+ I + P ++++E +++ R+ L +D+ EI++D+ + I Sbjct: 176 ENLRTIWKKINEKFRRARKPQILYEEPSLVEYILRERLTEDVKEIVVDSEDLWHDVVAGI 235 Query: 245 AALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDI 304 + + F ++ E F H I +++ + R V LP+GG+I ID TEA+T ID+ Sbjct: 236 SKF-KSGFKPIVRYV--EEDAFLHEGIYEKMKVLYTRVVPLPNGGNIFIDKTEAMTVIDV 292 Query: 305 NSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLR 364 NSA T G D+ E + NTNLEAA EIARQLRLR++GG+IVIDFIDM ++ V + L Sbjct: 293 NSASNTHGSDVSEMSLNTNLEAAVEIARQLRLRNIGGIIVIDFIDMKSEADRKKVISLLS 352 Query: 365 EAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSIL 424 E +++D+A I +R GLLEM+R+R + ++ + CP C GTG + + ++ Sbjct: 353 EELKKDKAHSLILGFTRLGLLEMTRKRSTATINSRIYSTCPICRGTGQIESPKITYQRLV 412 Query: 425 RLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVR 470 ++ + + V ++ L E + ++ R+ V Sbjct: 413 SDLQRLFKDKKIKSATVQVYQNLSGILTPEVQKQLSKQFKREIKVS 458 >UniRef50_C4K6Y9 RNase G (Ribonuclease G) n=2 Tax=Enterobacteriaceae RepID=C4K6Y9_HAMD5 Length = 495 Score = 480 bits (1234), Expect = e-133, Method: Composition-based stats. Identities = 155/500 (31%), Positives = 254/500 (50%), Gaps = 13/500 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQ--KKANIYKGKITRIEPSLEAAFV 58 M L+ E RVA +D L ++ IE + NIY+G++TRI P ++AAF+ Sbjct: 1 MTSELLINVTPFETRVAYIDDNILQEIYIERENENKTGLVGNIYQGRVTRILPGMQAAFI 60 Query: 59 DYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 D E+ FL +I P N I +++ GQ V+VQ+ K+ G+KGA LTT Sbjct: 61 DIQLEKAAFLHASDILSLKPPENEDQRQD--IAELIHLGQNVMVQVIKDPLGSKGARLTT 118 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAE 178 I+LA YLVL IS+R+E + E + + S + G IVRTA G + Sbjct: 119 HITLASRYLVLTMTPE--VAISQRLENEQERERLKNIVSSYCDKKNGFIVRTAAEGMDEK 176 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDY-LRQDIGEILIDNPKVL 237 AL D +F W I + +++ E + R RD+ + + + ID+ + Sbjct: 177 ALASDAAFLKSLWANIIAGKTQNGSKNVLYTELPLKKRILRDFTVVASLDRVRIDDQQTY 236 Query: 238 ELARQHIAALGRPDFSSKIKLY----TGEIPLFSHYQIESQIESAFQREVRLPSGGSIVI 293 + P+ K++ Y LFS Y +E++I+S ++V L SGG ++I Sbjct: 237 NSLKAFSEEY-IPEMLPKLEHYPVEKKNNQTLFSFYHVENEIQSLLNKKVPLKSGGCLII 295 Query: 294 DSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPV 353 + TEA+T IDIN+A ++EET F+TN+EA IARQLRLR+LGG+I+IDFIDM Sbjct: 296 EQTEAMTTIDINTAGFVGYKNLEETIFDTNIEATRVIARQLRLRNLGGIIIIDFIDMKNE 355 Query: 354 RHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 H++ V + L++A+ QDR + + S GL+E++R+R + ++ + C C G G Sbjct: 356 EHKKNVLSSLKKALNQDRVKTTVGEFSPLGLIEITRKRTTENIEKILCDRCQTCEGRGWF 415 Query: 414 RDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVI 473 + E++ I R + + ++Q++ V ++ +LL++K + I+ G + I Sbjct: 416 KSPETVCHEIFRKMIQLHHSSDSQQMLVYVSNRVSDFLLHQKAETLAKIQC-LLGKKIQI 474 Query: 474 VPNDQMETPHYHVLRVRKGE 493 + +H+L + Sbjct: 475 KIDPLYTQNQFHILTISPPS 494 >UniRef50_A3ZLB1 Ribonuclease E n=4 Tax=Planctomycetaceae RepID=A3ZLB1_9PLAN Length = 588 Score = 479 bits (1232), Expect = e-133, Method: Composition-based stats. Identities = 167/425 (39%), Positives = 243/425 (57%), Gaps = 4/425 (0%) Query: 83 SAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRR 142 +P I+++ + G EV+VQ+ KE G+KG L+T+IS+ G YLVLMP R G+SR+ Sbjct: 165 RPRVKPPIQEIFKRGDEVLVQVIKEGIGSKGPTLSTYISIPGRYLVLMPALGRV-GVSRK 223 Query: 143 IEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESR 201 IE D R L+ L L P+G+G IVRTAG ++ + L D+++ L+ W+ I + ++ Sbjct: 224 IEDDQVRRRLRSTLLELSPPKGLGFIVRTAGQERNKKELSRDMAYLLRLWKVIVRRLKNT 283 Query: 202 PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTG 261 P I++ES++I+R RD D+ I +D+ E A++ + L P +++K Y Sbjct: 284 TGPCDIYEESDMIIRTIRDIFSSDVDSIYVDSEPAYERAKEFLQ-LVMPRHVNRLKKYES 342 Query: 262 EIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFN 321 + PLF Y ++ +I QREV L GGSIVID TEAL AID+NS G EE A+ Sbjct: 343 KDPLFHKYHLDEEIARINQREVPLRRGGSIVIDQTEALVAIDVNSGNFRYDGTAEEAAYQ 402 Query: 322 TNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISR 381 N+ AA EIARQLRLRDLGG++V DFIDM +H+R VE LR++V++DRAR +I S Sbjct: 403 LNMMAAKEIARQLRLRDLGGVVVNDFIDMRREKHRRNVERALRDSVKRDRARTKILKTSP 462 Query: 382 FGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHA 441 FGL+EM+RQR+ PSL S CP C G G V+ ES+++ ++R++ A + V Sbjct: 463 FGLIEMTRQRIRPSLKRSVFKDCPCCKGRGVVKSAESMAIEVVRMLLAAAHHDGASHVTI 522 Query: 442 IVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYM 501 V +A+YL N+KR + IE + V I ++ H V V Sbjct: 523 RVNDEVATYLNNKKRRELARIEEDTNIV-VQIYGSESFYPEHLEVECVDADGRRLHFDDR 581 Query: 502 LPKLH 506 Sbjct: 582 PTGNA 586 Score = 105 bits (261), Expect = 1e-20, Method: Composition-based stats. Identities = 33/83 (39%), Positives = 52/83 (62%), Gaps = 1/83 (1%) Query: 1 MKR-MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 MK+ MLIN +Q EE R+A+V+ L + +E + NIYKG + +EPS++AAFVD Sbjct: 1 MKKEMLINVSQPEECRIAIVEDGILEEFYLERTSQDNYVGNIYKGVVVNLEPSIQAAFVD 60 Query: 60 YGAERHGFLPLKEIAREYFPANY 82 +G ++GFL + ++ +YF Sbjct: 61 FGVGKNGFLHISDVEPQYFRQGG 83 >UniRef50_Q83MU7 Ribonuclease G n=2 Tax=Tropheryma whipplei RepID=Q83MU7_TROWT Length = 549 Score = 479 bits (1231), Expect = e-133, Method: Composition-based stats. Identities = 154/455 (33%), Positives = 248/455 (54%), Gaps = 22/455 (4%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 ML+ + +++V +++ L + + NIY G++ + P +EAAFVD G Sbjct: 68 MLVRGSGASDVQVGILEEGILVEYYMARGASSSLVGNIYMGRVQNVLPGMEAAFVDIGCG 127 Query: 64 RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLA 123 R+ L E E +I++ +REG V+VQ+ K+ NKG +T +SLA Sbjct: 128 RNAVLYSGEAVWE-------GVKAQSIENTVREGSSVLVQVTKDAVANKGPRVTGQLSLA 180 Query: 124 GSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWD 183 G YLV P + GG+SRRI +R L+++L + + + LI+RTA VG ++E L D Sbjct: 181 GRYLVYAPGS---GGVSRRIAPSERARLQKSLKA-AVEDVSSLIIRTAAVGATSEQLGND 236 Query: 184 LSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQH 243 + + AIK+ +E+ AP +I+ E ++++R RD D E++++ ++ E + Sbjct: 237 AKMLCEAYRAIKEKSENATAPSIIYSEPDLLIRLLRDTFNNDFKELIVEGAELYERVNSY 296 Query: 244 IAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAID 303 + + P+ K+ + E LF Y+I QI+ + R+V LPSGGS+V+D TEA+T ID Sbjct: 297 LQDVS-PEMLGKVSK-SSEEDLFDAYRITEQIDRSLNRKVLLPSGGSLVVDHTEAMTVID 354 Query: 304 INSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENR 362 +N+ + +E+T + NLEA DEI RQ+RLRDLGG++VIDFIDM ++ V NR Sbjct: 355 VNTGKFVGTSSSLEQTVTDNNLEAVDEIVRQIRLRDLGGIVVIDFIDMLLQENRDLVYNR 414 Query: 363 LREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLS 422 L EA+ DR+R +++ I+ GL++M+R++L +L E +C RCSG G V + Sbjct: 415 LLEALSLDRSRHKVAEITSLGLVQMTRKKLGVAL-EPVSELCDRCSGRGRVINPVPNKPR 473 Query: 423 I-----LRLIEEEALKENTQEVHAIVPVPIASYLL 452 LR + +EA + A Y Sbjct: 474 ARKKHRLRQVNKEA--SDAAVRIISAMQDTAGYSD 506 >UniRef50_Q92QJ4 Probable ribonuclease E n=1 Tax=Sinorhizobium meliloti RepID=Q92QJ4_RHIME Length = 924 Score = 477 bits (1227), Expect = e-132, Method: Composition-based stats. Identities = 216/679 (31%), Positives = 324/679 (47%), Gaps = 4/679 (0%) Query: 83 SAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRR 142 + I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+ Sbjct: 236 KPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRK 295 Query: 143 IEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESR 201 I DR LKE L++P+GMG+I+RTAG ++ ++ D + ++ WE ++ + Sbjct: 296 ITNLQDRKRLKEIARGLDVPQGMGVILRTAGANRTKVEIKRDFEYLMRLWENVRTLTLNS 355 Query: 202 PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTG 261 AP L+++E ++I R+ RD +DI EI++ + + A+ + L P + ++ Y Sbjct: 356 TAPCLVYEEGSLIKRSIRDLYNKDISEIVVSGEEGYKEAKGFMKML-MPSHAKVVQPYRD 414 Query: 262 EIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFN 321 P+FS IE+Q++ Q +V L SGG I+I+ TEAL +ID+NS R+TR IE+TA Sbjct: 415 VHPIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREHSIEDTALQ 474 Query: 322 TNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISR 381 TNLEAA+E+ARQLRLRDL GLIVIDFIDM R+ R+VE +L++ ++ DRARIQ+ IS Sbjct: 475 TNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISH 534 Query: 382 FGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHA 441 FGLLEMSRQR+ S+ ES+ CP C+GTG +R S++L +LR IEE LK T ++ Sbjct: 535 FGLLEMSRQRIRASVLESTMQTCPHCNGTGHIRSQSSVALHVLRGIEEHLLKNTTHDISV 594 Query: 442 IVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYM 501 IA YLLN+KRS++ E R GV I + + H+ + R E + + Sbjct: 595 RTTPDIALYLLNQKRSSITDYEQRF-GVSIFIEADAHVGAQHFAIDRGEPVENPVRIDQI 653 Query: 502 LPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPAT 561 L E E + + A P Sbjct: 654 LQFEPEPEDEEEVLIEEESDEEEVEEIAAERQDPKKGQTDEQGGRKRKRRRRRRGKGAGQ 713 Query: 562 PAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAP-KAEAKPERQQDRRKPRQNNRRDRN 620 A A + + + +++ +R++ RR R R ++ Sbjct: 714 GADEAFADAADAAEDETGDEAAVDDAEDEVDATDALNGDSEQKRKRRRRGKRGGRRSRQD 773 Query: 621 ERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERS 680 E + E ++ E + A E+ A E+ P + R Sbjct: 774 ELAEAEGETGMAAEAGEGAGDDAEAEVAPAAAAEETSPDIAAAAAVEAAAEEPKPAKPRR 833 Query: 681 RRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAV 740 R+ K + E+ E+ + E E K Sbjct: 834 SRKKAVKAEEPAESVDEVAEKTVEAQPEATEAAPEAVEEAVADLEGAKPARANRDLSAIA 893 Query: 741 VAPVVEETVAAEPIVQEAP 759 PVV + P Sbjct: 894 TEPVVTSSKGEGEEEPTKP 912 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 40/86 (46%), Positives = 55/86 (63%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 ++MLI+A+ EE RV +V G R+ + D ES +Q + NIY K+TR+EPSL+AAFVDYG Sbjct: 3 EKMLIDASHSEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGR 87 RHGFL EI +Y+ + Sbjct: 63 GNRHGFLAFAEIHPDYYQIPLADRQA 88 >UniRef50_D2NSV3 Ribonuclease G and E n=2 Tax=Rothia mucilaginosa RepID=D2NSV3_9MICC Length = 1288 Score = 477 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 215/875 (24%), Positives = 368/875 (42%), Gaps = 36/875 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R ++ + +++ +++ L + + + N+Y GK+ + PS+EAAFVD Sbjct: 417 VDRQMLVRQKDGRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDI 476 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + + + I++ L+ G V+VQ+ K+ G+KGA LT+ + Sbjct: 477 GRGRNAVLYAGEVNWDVTGLDGAPR---KIENALKPGDSVLVQVTKDPIGHKGARLTSQV 533 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G +LV +P GISR++ +R LK+ L +LPEG G+IVRTA G S E L Sbjct: 534 SLPGRFLVYVPGGSMT-GISRKLPDTERARLKKILKD-KLPEGAGVIVRTAAEGASEEEL 591 Query: 181 QWDLSFRLKHWEAIKKAAESRP--APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 D++ WE I++ A+SR AP +++QE +++++ RD +D +++ + Sbjct: 592 THDINRLRAQWEEIQEKAKSRKVLAPEMLYQEPDLMIKTVRDVFNEDFTAMIVQGENAWD 651 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 ++ + PD S+++ + G+ LF HY+I Q+ A R+V LPSGGS+VID TEA Sbjct: 652 SIEAYVTYVA-PDLVSRLQQWDGDDDLFDHYRINEQLAKALDRKVYLPSGGSLVIDRTEA 710 Query: 299 LTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 +T +D+N+ + T GG++EET NLEAA+EI RQLRLRD+GG+IVIDFIDM ++ Sbjct: 711 MTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRD 770 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V RL E + +DR + Q++ ++ GL++M+R+RL L E C C+G G V ++ Sbjct: 771 LVLRRLIECLGRDRTKHQVAEVTSLGLVQMTRKRLGTGLLEVFSEPCEHCAGRGLVVHDQ 830 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 LS + E + KRS A E +D + + + Sbjct: 831 PLSGRSGGASDYIHRHER----------------NDRKRSRAAAREDSRDQQKQDALESK 874 Query: 478 QMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 + E + + S ++ + + + A Sbjct: 875 KAERRNAMAAVAAASAHSEEASEETASTRKKRKRRKRSRRAETAELSLEQEIQGIAEAAS 934 Query: 538 PPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPK 597 A VA + L+ F ++ + G E+ + + Sbjct: 935 EQAHAEVAQREDKVAEVTEGNWIGEQGGFSLEQLASAFDRVEEESAEGSSKDSAEERSDQ 994 Query: 598 AEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRES- 656 A+ R R + + + R R E D E S + + +R S Sbjct: 995 ERAEERRSSKRGEKKSSRNRKRRELTDADIAAVEDSGAGALEDEHHVDPELDPRFSRSSD 1054 Query: 657 RQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPV 716 R +A +A+ Q+A R R+ + + + AK N E++ + T E Sbjct: 1055 RFEAIRAGEAKARASQKAGRLARAEGESFRSGREDRSAKRQNAEQKGAEATSAEVNSGVQ 1114 Query: 717 QPRRKQRQLNQKVRYEQSVAEE---------AVVAPVVEETVAAEPIVQEAPAPRTELVK 767 + + +R + +R E A E++ ++APA ++ K Sbjct: 1115 KAQESKRVEREDLRIEDVRETPRASRRRARRAADEKRAEKSAEQSVASEQAPAKADKIEK 1174 Query: 768 -VPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPM 826 PVV ++P R+R + Sbjct: 1175 SESRPVVTGVISAPAVTGVVGAAPAAVEAPVEDQTPAAQVPGSTPRKRRTRRAASSAGAG 1234 Query: 827 PLTVACASPELASGKVWIRYPIVRPQDVQVEEQRE 861 V + E A G V + V + Sbjct: 1235 AQVVTVDASERAEGSVVASASVADVAPVADDASAP 1269 >UniRef50_A6LNV2 Ribonuclease, Rne/Rng family n=2 Tax=Thermosipho RepID=A6LNV2_THEM4 Length = 465 Score = 477 bits (1226), Expect = e-132, Method: Composition-based stats. Identities = 147/468 (31%), Positives = 250/468 (53%), Gaps = 19/468 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M+++L+ + L A+++ RL +L S E+ NIY G+I R+ +L+A FV+ Sbjct: 1 MEKILVLNSLDNGLHYAIIENNRLVEL--ASDEEEKLTGNIYLGRIERVVNALDALFVNI 58 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +++GFL K++ +YF L G +++VQ+ K+ G+KG LT+ I Sbjct: 59 GTKKNGFLRFKDVPEKYFEFFSLKK--------LENGGKILVQVKKDPVGDKGPQLTSNI 110 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 S+AG Y+VL P + G+S++IE + +R L + +G+I+RTA G Sbjct: 111 SVAGRYVVLFPFSE-VVGVSKKIEDEDERKRLYDLAGRFSEKYNLGVIMRTASEGLDEVH 169 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + ++ K I ++ + + ++++E N++ R+ L +D+ I+ +N K +EL Sbjct: 170 IMSEIDILSKKINKIIESFKRKRKAQVLYKEENLLDYILREKLTKDVKLIITNNFKHVEL 229 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 R+++ + KI++ G+ F + I +R+V LPSGG I+ID EAL Sbjct: 230 IRKYLKIFSK---RPKIEIIDGDS--FDYMDIYKYFRELLKRKVLLPSGGEIIIDKAEAL 284 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+NS +G + +ETAF TN EA EI RQLRLR++GG+I+IDFIDM ++ + Sbjct: 285 TVIDVNSKHFVKGKNQQETAFQTNKEAVSEIFRQLRLRNIGGIILIDFIDMDSDEKKKLI 344 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 ++ E +++D+++I+I +R GLLEMSR+R S E+ +CP C+GTG + + Sbjct: 345 LKQIDEEIKKDKSKIEIFGFTRLGLLEMSRKRTVRSFFENYITICPICNGTGFIVSPKMT 404 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQD 467 + + IEE E+ +EV + L + I Sbjct: 405 LKKLYQKIEE--APEDAKEVIIKLHPYFKDKLEKSELKKRKDIVYHIH 450 >UniRef50_B1I4P9 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I4P9_DESAP Length = 416 Score = 475 bits (1222), Expect = e-132, Method: Composition-based stats. Identities = 160/416 (38%), Positives = 243/416 (58%), Gaps = 8/416 (1%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 KR +I +T+ RVAL++ + ++ IE +I+KG + + P +EAAFV+ G Sbjct: 3 KREIIVSTRDNATRVALLENRVPMEVYIEPDEEICLVGSIFKGVVENVLPGIEAAFVNVG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFIS 121 +R+ FL + ++ + A+ SA G I+D+L GQEVIVQ+ K+ GNKG +T ++ Sbjct: 63 LDRNAFLYVNDVLPQSARADQSAAG---IRDLLHPGQEVIVQVAKDPLGNKGPRVTMRVN 119 Query: 122 LAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 L G Y VLMP GISRRIE + +R L+E + PEGMG IVRTA G +AE L Sbjct: 120 LPGHYTVLMPTVNHV-GISRRIEDESERERLREVVHRAR-PEGMGAIVRTAARGIAAEVL 177 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 D+ K W I+K AP L+++E ++ R RD ++I +++D+ + Sbjct: 178 ADDIRELEKLWRDIQKREAGAAAPSLLYRECGLLPRIIRDLFTEEIERLVLDSFTSYARS 237 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + + P S++ + + +F Y + +I A QR+ L GG ++ D EALT Sbjct: 238 LTILDTVN-PQLKSRV-FWEDKPDIFEAYNVNQEINKALQRKTWLRCGGYLIFDQAEALT 295 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ID+N+ R T D+E+T + TNLEAA EIARQLRLR+LGG+I+IDFIDM+ H+ V Sbjct: 296 VIDVNTGRFTGRVDLEDTVYKTNLEAAVEIARQLRLRNLGGIIIIDFIDMSHEEHRNRVL 355 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDN 416 L E +++DR R I ++R GL+E++R+++ PSL E CP+C GTG ++ Sbjct: 356 EVLGEEIKKDRRRTHIMGLTRLGLVELTRKKVHPSLAELLLTNCPQCGGTGKIQGQ 411 >UniRef50_Q9K8J2 Ribonuclease G (Cytosolic axial filament protein) n=1 Tax=Bacillus halodurans RepID=Q9K8J2_BACHD Length = 500 Score = 475 bits (1221), Expect = e-132, Method: Composition-based stats. Identities = 164/506 (32%), Positives = 275/506 (54%), Gaps = 7/506 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK +L N + E R A+V+ ++ +L IE P E+ N+Y+G++ + P ++A FVD Sbjct: 1 MKSILFNMATR-ERRAAVVENGQVIELMIERPVEERIVGNVYRGRVVNVLPGMQACFVDI 59 Query: 61 GAERHGFLPLKEIAREYF-PANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G E++GFL E+ + + NI D ++EG+E++VQ+ KE G KG LT Sbjct: 60 GREKNGFLYRDELLSFHLSNEEEDEKKKRNISDFVQEGEELLVQVTKEGFGTKGPRLTGV 119 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ++ G Y+V MP G+S++I ++ E + L GLI+RTA + Sbjct: 120 VAFPGRYVVYMPQAGYV-GVSKKIFPEEERERWRSEWEQLLLNDEGLIIRTACKKEVRHE 178 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + ++ F + WE ++K + AP L++Q S +I R RD+ ++GEI++D+ + Sbjct: 179 AEQEILFFRQMWEELQKRGKGAKAPSLLYQSSGLIERILRDFPLDEVGEIVVDDREEYHF 238 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 +Q +A+ P+ S++ LY G+ +FSH ++E +IE +R+V L +GG +++D EAL Sbjct: 239 IKQLLASY--PNMESRVFLYKGKENVFSHLKVEKEIEKGLRRQVWLKNGGYLMMDHAEAL 296 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+NS + D+++T N+EAA EIA QLRLRD+ G+I+IDFIDM Q+ V Sbjct: 297 TVIDVNSGKFIGKQDLQDTVVKVNIEAAKEIAHQLRLRDISGIIIIDFIDMKREEDQQLV 356 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 + L +A++ DR + + ++ GL+EM+R+++ SL S CP C GTG V +E+ Sbjct: 357 LHTLEQALKTDRTKTNVIGMTGLGLVEMTRKKVRQSLQASLSKPCPTCRGTGQVLSDEAQ 416 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 + I R + E + + + +P IA L + + +ET G R + VP + Sbjct: 417 AFKIERELWEYRG-SDAEAIVLELPSHIAPVLFGQDGGHLKRLETAI-GSRILAVPKKTL 474 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKL 505 + Y + + EE + K Sbjct: 475 KEEQYEIRYIGSLEEATQFVERIKKR 500 >UniRef50_D2LS23 Ribonuclease, Rne/Rng family n=1 Tax=Bacillus cellulosilyticus DSM 2522 RepID=D2LS23_BACS4 Length = 456 Score = 474 bits (1219), Expect = e-132, Method: Composition-based stats. Identities = 135/443 (30%), Positives = 225/443 (50%), Gaps = 11/443 (2%) Query: 41 IYKGKITRIEPSLEAAFVDYGAERHGFLPLKE-IAREYFPANYSAH-GRPNIKDVLREGQ 98 ++ G++ I P +EAAFV+ GA+++GFL E IA + + +P I +L+EGQ Sbjct: 1 MFIGRVEDIVPGMEAAFVNIGADKNGFLYRNELIAYDTLKDDKEPDVKQPTIASMLKEGQ 60 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASL 158 +IVQ+ KE G KG LT ISL G Y+V +P +S+++ ++R +E Sbjct: 61 SIIVQVTKEAVGAKGVRLTEKISLPGKYIVYLPYGNYV-AVSKKMNEENRKGWREKAREW 119 Query: 159 ELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAF 218 + + G+I+RT S E + + + + + + AE P ++ +S++I R Sbjct: 120 -IEDREGIIIRTNAEDASHEEIYHEFTLLRHQHQQMLQQAEKVNVPNVLLNQSSLISRVQ 178 Query: 219 RDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESA 278 RDYL EI++D+ + E L I LY + +FS+Y IE +E A Sbjct: 179 RDYLTNKNSEIVVDHFESYEQL------LNSSLEGCNIHLYQEKEDIFSYYDIEKHLEKA 232 Query: 279 FQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRD 338 +V L SGG ++I+ TEALT ID+N+ + T ++ +T TN+EAA +A+QLRLR+ Sbjct: 233 LHEKVWLKSGGFLIIEKTEALTVIDVNTGKFTGKHNLRDTVVKTNIEAAYAVAQQLRLRN 292 Query: 339 LGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGE 398 +GG+I+IDFIDM Q++V L+EA + DR ++ + FGL+EM+R++ L + Sbjct: 293 IGGIILIDFIDMKVESDQKSVLKALKEATKNDRTLTNVAGFTNFGLVEMTRKKARKPLHD 352 Query: 399 SSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSA 458 C C GTG V +S + R + + + V + LL Sbjct: 353 IMMESCSVCKGTGQVLSLKSKIAHLEREVFALRYIDQ-DAILVEVDSAVYESLLQNNNDL 411 Query: 459 VNAIETRQDGVRCVIVPNDQMET 481 + ++E + ++ + Sbjct: 412 LTSMEQVVNKTIYLVNGENGHLP 434 >UniRef50_C6E0U6 Ribonuclease, Rne/Rng family n=8 Tax=Desulfuromonadales RepID=C6E0U6_GEOSM Length = 919 Score = 474 bits (1218), Expect = e-131, Method: Composition-based stats. Identities = 268/936 (28%), Positives = 408/936 (43%), Gaps = 23/936 (2%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 MLINA EE RVA+V+ RL DLD+E G+EQ + NIYKG + R+E L+AAFVD G + Sbjct: 1 MLINALHPEEARVAIVEDGRLVDLDVEIAGNEQIRGNIYKGVVVRVEQGLQAAFVDIGLK 60 Query: 64 RHGFLPLKEIAREYFP-----ANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 + GFL + E+ E + H RP I++VLR GQE+IVQ++K ER NKG+ALTT Sbjct: 61 KLGFLQMGELHPENWKWRDDIPEDQRHRRPRIQEVLRRGQELIVQVEKGERDNKGSALTT 120 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSA 177 ++SL G Y+VLMP + A GISR++EGD +R +LKE +A + +PEG G I+RT +G++ Sbjct: 121 YVSLPGRYMVLMPGSDSA-GISRKVEGDGERKKLKEIIAEMTIPEGYGYIIRTEAMGRTR 179 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 + LQ DL + ++ I+ + +I+QES +I+R RDY DI E+L+D+ V Sbjct: 180 DELQKDLDNLIATYQGIRSKGLAMKGAGMIYQESALIIRTIRDYFSADIDEVLVDSKDVY 239 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 R + + P F +K++ + P+FS YQ+E QI+ ++++V L SGGSI I+ TE Sbjct: 240 NDVRDCLKEID-PAFEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSIFIEPTE 298 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 AL +ID+NS ++T +E+TAF TNLEAA+E ARQLRLRDLGGLIVIDFIDM +H Sbjct: 299 ALVSIDVNSGKSTGEKGVEDTAFKTNLEAAEEAARQLRLRDLGGLIVIDFIDMRDRKHNA 358 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 VE L+ A++ D+AR+ +S IS FGLLEMSRQR+ +L ++S CP C G G V+ E Sbjct: 359 EVEKTLKTALKADKARVNVSRISEFGLLEMSRQRIRQTLNQASTLECPHCDGRGKVKSVE 418 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 +++LS LR + A K EV +P+ +A YLLN KR ++ IE+ D + + Sbjct: 419 AMALSFLRKVHAAAAKGTIGEVVGGLPLEVAYYLLNRKRHELSQIESDYD-IEVTVKGKP 477 Query: 478 QMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 + L K + A L E+ R P++ A A Sbjct: 478 SYLLNQMDL--------------ELIKREKPADELLLEKPAHGRSLPKEEAAQEPAAEGR 523 Query: 538 PPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPK 597 +P P A +A P L K Sbjct: 524 KKKKKGKKPQEPEAAAHAEALPVAVVEEPTGAELVVTVEGEPDEHKKKRRRKRKRGKGGA 583 Query: 598 AEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESR 657 AEA E + E + + +A ++ + R + Sbjct: 584 AEAGAEAATAQSAEADVELSAAEAGTLPEPGPVTEQAAAAEGEQLQHEAGEEVKKKRRRK 643 Query: 658 QQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQ 717 ++ E A + +E + E + + Sbjct: 644 RRRGKVGHEAQLHEPGAEFPPQLEAFAAAGDIPVREVTPVITASAVSVEPGAAAKKGRKR 703 Query: 718 PRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTA 777 + + + Q A V AA+P E A Sbjct: 704 GKARAEEPAVSAGAAQVEAITVPAEGVESAEPAAKPKRTRGGRKAKEASAEQGAAAVAAA 763 Query: 778 PEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEL 837 + P +++R PR + + E + + A + Sbjct: 764 APGVAPEAPARTEAPAEPAKAKRKPRGAKAAKGAEAAPVPEAGEAKPAPAVKKAPVAVTE 823 Query: 838 ASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVE 897 + + ++E E A A + + + E Sbjct: 824 GVEAPAKEKSAKGKSAKAPKAPKAKKEQEAATAAPEPSSAPAQDKAPAKARAPRASRKKE 883 Query: 898 APVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESD 933 AP + + + + ++ Sbjct: 884 APEGTGQASAAPAAPVEEKPKKPRAPRKKKEEAPAE 919 Score = 61.5 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 55/418 (13%), Positives = 113/418 (27%), Gaps = 6/418 (1%) Query: 640 RRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNV 699 +R + + + R + A E + +++ + + + + V Sbjct: 490 KREKPADELLLEKPAHGRSLPKEEAAQEPAAEGRKKKKKGKKPQEPEAAAHAEALPVAVV 549 Query: 700 EEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAP 759 EE + E P + ++K+R+ ++ + + A E + Sbjct: 550 EEPTGAELVVTVEGEPDEHKKKRRRKRKRGKGGAAEAGAEAATAQSAEADVELSAAEAGT 609 Query: 760 APRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDER 819 P V EQ + + +R R H + + + Sbjct: 610 LPEPGPVTEQAAAA---EGEQLQHEAGEEVKKKRRRKRRRGKVGHEAQLHEPGAEFPPQL 666 Query: 820 YPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAA 879 + + V +P + + V + + + + R +E + Sbjct: 667 EAFAAAGDIPVREVTPVITASAVSVEPGAAAKKGRKRGKARAEEPAVSAGAAQVEAITVP 726 Query: 880 IEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQE 939 E V SA + + A + ++ A A+ Sbjct: 727 AEGVESAEPAAKPKRTRGGRKAKEASAEQGAAAVAAAAPGVAPEAPARTEAPAEPAKAKR 786 Query: 940 VAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEV 999 A+ + + A V P V + E +A+ ++ A + Sbjct: 787 KPRGAKAAKGAEAAPVPEAGEAKPAPAVKKAPVAVTEGVEAPAKEKSAKGKSAKAPKAPK 846 Query: 1000 TVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARP 1057 + A T AP P P + R A K A G A AAP Sbjct: 847 AKKEQEA---ATAAPEPSSAPAQDKAPAKARAPRASRKKEAPEGTGQASAAPAAPVEE 901 >UniRef50_Q7CZH1 Ribonuclease E n=7 Tax=Alphaproteobacteria RepID=Q7CZH1_AGRT5 Length = 977 Score = 473 bits (1216), Expect = e-131, Method: Composition-based stats. Identities = 211/712 (29%), Positives = 330/712 (46%), Gaps = 6/712 (0%) Query: 83 SAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRR 142 + I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+ Sbjct: 262 KPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRK 321 Query: 143 IE-GDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESR 201 I DR LKE LE+P+GMG+I+RTAG ++ ++ D + ++ WE ++ + Sbjct: 322 ITQPTDRKRLKEIARDLEVPQGMGVILRTAGANRTRVEIKRDFEYLMRLWENVRTLTLNS 381 Query: 202 PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTG 261 AP L+++E ++I R+ RD +DI EI++ + A+ + L P + ++ Y Sbjct: 382 TAPCLVYEEGSLIKRSIRDLYNKDISEIIVSGEEGYREAKDFMKML-MPSHAKVVQPYRD 440 Query: 262 EIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFN 321 P+FS IE+Q++ Q +V L SGG ++I+ TEAL AID+NS R+TR IEETA Sbjct: 441 IHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIINQTEALVAIDVNSGRSTREHSIEETALT 500 Query: 322 TNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISR 381 TNLEAA+E+ARQLRLRDL GL+VIDFIDM R+ R+VE +L++ ++ DRARIQ+ IS Sbjct: 501 TNLEAAEEVARQLRLRDLAGLVVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISH 560 Query: 382 FGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHA 441 FGLLEMSRQR+ S+ ES+ VC C GTG VR S++L +LR +EE L+ T + Sbjct: 561 FGLLEMSRQRIRASVLESTTQVCQHCGGTGHVRSESSIALHVLRGVEEYLLRNTTHNITV 620 Query: 442 IVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYM 501 A YLLN KR ++ E R GV +I + + H+ + R E + + Sbjct: 621 RCTPETALYLLNHKRGSIVDYEGRF-GVAIIIAADSSVGAQHFAIDRGEAVENPVKIESL 679 Query: 502 LPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPAT 561 + L E E+ + + + Sbjct: 680 IQMLPSFVEEEDDIVIEVEEDEEEEEIVKAESAQPRQQPQGDNGEDGKRKRKRRRRRRGK 739 Query: 562 PAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNE 621 Q G L G + E A++ + + + + Sbjct: 740 GGQNEQNGALDGQSGNDAEDDDAEGDDDGVETDEAGADSDENGANE---AANADEDGKRK 796 Query: 622 RRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSR 681 RR + + + + E A + + Sbjct: 797 RRRRGKRGGRRNRDDALDAAGADGETEGEGAEGEEVSTAAPVTEEPATAAEVVEGVVADV 856 Query: 682 RRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVV 741 + ++ ++ KA E +E + E V V+P + + + + ++ E Sbjct: 857 VAEEAPKKPRRTRKAKTKTETETEEAPKAETVETVEPVIIEPVVVEATVVDVAIEEVGEA 916 Query: 742 APVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGG 793 + + ++ A R V PVV + + + + G Sbjct: 917 SAGLAPGADVPGTEEKTRANRGSNVSSSEPVVTSSGSPASNPDGDEPKPRKG 968 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 40/86 (46%), Positives = 55/86 (63%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+A+ +EE RV +V G R+ + D ES +Q + NIY K+TR+EPSL+AAFVDYG Sbjct: 3 DKMLIDASHEEETRVVVVRGNRIEEFDFESEHKKQIRGNIYLAKVTRVEPSLQAAFVDYG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGR 87 RHGFL EI +Y+ + Sbjct: 63 GNRHGFLAFAEIHPDYYQIPLADRQA 88 >UniRef50_A5FJP9 Ribonuclease, Rne/Rng family n=29 Tax=Bacteroidetes RepID=A5FJP9_FLAJ1 Length = 543 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 147/510 (28%), Positives = 241/510 (47%), Gaps = 32/510 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + + LI + E + AL+ +L +L E + +I+ KI + L AAFV+ Sbjct: 30 VNKELIIRSSSEAVDFALLKDGKLIELHKEEEKSNFQVGDIFIAKIRKPVAGLNAAFVNV 89 Query: 61 GAERHGFLPLKEIAREY----------------------FPANYSAHGRPNIKDVLREGQ 98 G E+ FL ++ F I D+L Q Sbjct: 90 GFEKDAFLHYHDLGPNLASQLKFIKLVSAGKLKDFSLKTFQFEKEIDKDGIITDILSANQ 149 Query: 99 EVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALAS 157 V+VQ+ KE KG ++ +SLAG ++VL+P + R IS++IE ++ LK+ + S Sbjct: 150 SVLVQVVKEPISTKGPRISAELSLAGRFIVLVPFSDRV-SISQKIEDKKEKDRLKKLVLS 208 Query: 158 LELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRA 217 + P+G G+IVRT GK+ L+ DL L W A+ K + P + E N Sbjct: 209 I-KPKGFGVIVRTVAEGKNVAELEKDLQNLLGRWSAMCKKLPTAHHPSKVLGELNRASSI 267 Query: 218 FRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYT-GEIPLFSHYQIESQIE 276 RD I ID+ ++ ++++ + P S +K Y + P+F Y IE QI+ Sbjct: 268 LRDVFNDTFSGIQIDDEELYHQTKEYLQEIA-PSKQSIVKFYQSNDTPIFEKYNIERQIK 326 Query: 277 SAFQREVRLPSGGSIVIDSTEALTAIDINSA-RATRGGDIEETAFNTNLEAADEIARQLR 335 ++F R V + G ++I+ TEAL ID+NS R+ + + E+TA N+ AA EIARQLR Sbjct: 327 TSFGRTVSMSKGAYLIIEHTEALHVIDVNSGNRSNKATNQEDTAMEVNMIAAAEIARQLR 386 Query: 336 LRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPS 395 LRD+GG+IV+DFIDM+ +++ + + LRE + D+A+ +I S+FGL++++RQR+ P Sbjct: 387 LRDMGGIIVVDFIDMSNPENRKVLFDFLREEMSDDKAKHKILPPSKFGLVQITRQRVRPE 446 Query: 396 LGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEK 455 + + P G + + I +E N +V +A+YL Sbjct: 447 VNIKTREEDPN-KVNGEIEAPILIIDKITSDLERLLKTHN--KVVLNTHPFVAAYLSKGF 503 Query: 456 RSAVNAIETRQDG-VRCVIVPNDQMETPHY 484 S + V+ + H+ Sbjct: 504 PSLRSKWFFEHKKWVKIIPRDAYTYLEYHF 533 >UniRef50_A5I670 Ribonuclease G n=12 Tax=Clostridium RepID=A5I670_CLOBH Length = 479 Score = 470 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 118/500 (23%), Positives = 238/500 (47%), Gaps = 21/500 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK + I Q+E +R+ L + + +L IE + IY G + I P++++AFVD Sbjct: 1 MKEIFIER-QRENVRIVLRENNHIKELFIEEDNKSPQVGEIYVGMVKNIIPAIKSAFVDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++ +L L + +++G ++V++ KE+ KG +T I Sbjct: 60 GWNKNAYLYLD---------------KKFNNTHIKKGDYILVEVVKEDLNKKGPKVTNAI 104 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 ++ G Y VL N S +I+ + E ++ P+ +G+++RT + S E + Sbjct: 105 TIPGRYTVLQILNNEIT-FSHKIKDEKIRT--EIQNNIVKPKDVGILIRTEAINTSIENI 161 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 ++ K + ++ + ++ + ++ Q ++ + RD L +I +I ++ + Sbjct: 162 NNEIRRLYKIYSSLIEKSKYKMNTGVLFQNGGIVGKILRDKLNDNISKIYLNCREDYVYV 221 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + + G + K+ +Y GE L +Y IE +I S ++V L GG I+ID TEA+ Sbjct: 222 SEFLKEYGENNI--KLDIYEGERNLLDYYAIEKEILSLRNKKVYLNCGGYIIIDKTEAMY 279 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +D+NS + +G +E+T F TN+EAADEI Q+ LR+L G+IVIDFIDM + V Sbjct: 280 VVDVNSGKNVKGNSMEKTIFTTNMEAADEICNQIILRNLNGIIVIDFIDMDNENLKEKVL 339 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 ++L++ +++D+ + + + L++++R+R ++ + C CSG G++ + Sbjct: 340 DKLKQGLKRDKNKSVVYPFTELNLVQIARKRQGKTIYDYIEQPCKCCSGKGSIVSFTYMK 399 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 L I I ++++ + Y+ + ++ IE + + + + Sbjct: 400 LLIRNEIINILNMREIKDIYIELNKRYKDYIDKNRIQFISEIEALEKNIYINYIDAENQY 459 Query: 481 TPHYHVLRVRKGEETPTLSY 500 + + + + Y Sbjct: 460 KVEPLIFKNQIEDVKDLKIY 479 >UniRef50_Q5WES2 Ribonuclease G n=1 Tax=Bacillus clausii KSM-K16 RepID=Q5WES2_BACSK Length = 497 Score = 470 bits (1208), Expect = e-130, Method: Composition-based stats. Identities = 141/508 (27%), Positives = 239/508 (47%), Gaps = 15/508 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M++ ++ + L++ + + ES Q +++ GK+ R+ P +EAAFVD Sbjct: 1 MEQSIVITKGINKREAVLLENNEVVEWFFESNDRPQMVGSVFLGKVERVLPGMEAAFVDI 60 Query: 61 GAERHGFLPLKEIAREYF-PANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G ++GFL E+ + P++ + +I + G + VQ+ KE KG L+ Sbjct: 61 GTGKNGFLHRDELLAFHLDPSDLTEKQTKSISQFVSPGDTIAVQVTKEGTNEKGPRLSGV 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAE 178 +S+ G Y+V MP +SRRIE + R L AL + +L G IVRTA E Sbjct: 121 VSIPGKYVVYMPEGAYV-AVSRRIESEHVRASLHTALEN-KLQHNEGAIVRTAAANAPLE 178 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 ++ DL F W+ + E AP LI++ + ++ YL + + E+++D+ Sbjct: 179 EVERDLVFLRTLWQKTLRHQEQ--APALIYRAATLVETLLLGYLNEQVTEVVVDDIDDYR 236 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 L +Q + D K+KLY + F +I +Q+ A +R + L +G +VID TEA Sbjct: 237 LMKQLVQT----DDKDKVKLYAHKGSSFQSARISAQLAKAQKRRIWLKNGAFLVIDETEA 292 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 +T ID+N+ + T ET N AA E A+Q+RLR+ G+IVIDFIDM + A Sbjct: 293 MTVIDVNTGKFTGKFAQSETVLAVNKLAAVEAAKQIRLRNCSGIIVIDFIDMQSDSDRLA 352 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 V+ + A+++DR + + ++ GLLEM+R++ S+ ++ C C+GTG V Sbjct: 353 VQQTMERALKKDRVKTSVRGFTKLGLLEMTRKKTRLSMAKTVTVECKACAGTGAVLAGHG 412 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 + + RLI EE + + V + S L+ GV +V ++ Sbjct: 413 HAFMLERLILEE----QAEALVVAVTAELRSLLVGVG-DLYKERLESLAGVTLFLVTDNS 467 Query: 479 METPHYHVLRVRKGEETPTLSYMLPKLH 506 + + + E + Sbjct: 468 LPQAKPYSIDFAGSYEEAQKRFDTMAQA 495 >UniRef50_Q2IVP9 RNAse E n=3 Tax=Bradyrhizobiaceae RepID=Q2IVP9_RHOP2 Length = 1060 Score = 469 bits (1206), Expect = e-130, Method: Composition-based stats. Identities = 222/738 (30%), Positives = 331/738 (44%), Gaps = 16/738 (2%) Query: 71 KEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLM 130 ++ E + + I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLM Sbjct: 315 DDVLEEVPERAFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLM 374 Query: 131 PNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLK 189 PN R GGISR+I DR+ LKE + L++PEGMG+I+RTAG ++ ++ D + ++ Sbjct: 375 PNTARGGGISRKITSAQDRSRLKEVVQDLDVPEGMGIILRTAGASRTKPEIKRDFEYLIR 434 Query: 190 HWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGR 249 WE ++ AP L+++E ++I R+ RD ++I EI + + AR + L Sbjct: 435 MWETVRDVTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEIQVAGEAGYQEARDFMHML-M 493 Query: 250 PDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARA 309 P +KLY PLFS +ESQ+++ F V+L SGG IVI+ TEAL +ID+NS R+ Sbjct: 494 PSNVRAVKLYRDGQPLFSRMGVESQLDAMFSPTVQLRSGGYIVINQTEALVSIDVNSGRS 553 Query: 310 TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQ 369 TR IE+TA TNLEA++E+ARQLRLRDL GLIVIDFIDM R+ RAVE +L + +RQ Sbjct: 554 TREHHIEDTALKTNLEASEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQ 613 Query: 370 DRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEE 429 DRARIQ+ IS FGLLEMSRQR+ S+ ESS CP C G+G VR S++L +LR +EE Sbjct: 614 DRARIQVGRISHFGLLEMSRQRIRASVLESSTEPCPHCGGSGHVRSVSSVALQLLRGLEE 673 Query: 430 EALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRV 489 +K T + +A Y+LN+KR + +ET G R + + Sbjct: 674 ILMKGATHNLIVRTRADVALYVLNQKRGHLRDLET---GFRVTLSVVSDPTVTGQQSFVI 730 Query: 490 RKGEETPTLSYMLPKLHEEAMALPSE-EEFAERKRPEQPALATFAMPDVPPAPTPAEPAA 548 +GE+ TL L + A P + EE E + V A A + Sbjct: 731 DRGEQVHTLESAKALLAAQVAAYPVQAEEPFEDDEGYEFEAEIETDETVGLADEHASDSG 790 Query: 549 PVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGG---EETKPTEQPAPKAEAKPERQ 605 +R GA + E + + + Sbjct: 791 EGEGEGDARKRKRRRRRRSRTGEAREAGAPREDGDAALVPEVLEAVSEDDSEDGDDSADG 850 Query: 606 QDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEK 665 + + ++ + R R R A + + +E E Sbjct: 851 AEGDGDARADQANGERRPRRRGRRGGRRRRGAAEGGLEEGASGSIVDDIGELETSEAAEA 910 Query: 666 ARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQL 725 A D + R + R++ + A+ + V +E + + Sbjct: 911 AADMDGGGSDGRLLGK-RHEPDIDDDEMAEPVTATLSPVASEPEERAEPVQAQQSEPVAS 969 Query: 726 NQKVRYEQSVAEEAVVAPVVEETVAAEPIVQE------APAPRTELVKVPLPVVAQTAPE 779 S + A + ++ P P Q P Sbjct: 970 APAQDAAPSAQAQDDAAAERAAARRRSTVREKVNFGSSEPKVEASTPLAIEPAAQQPEPA 1029 Query: 780 QQEENNADNRDNGGMPRR 797 + P R Sbjct: 1030 PAIPEPQAAAEPAPEPSR 1047 Score = 75.3 bits (183), Expect = 1e-11, Method: Composition-based stats. Identities = 38/86 (44%), Positives = 54/86 (62%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+AT EE RV +V G R+ + D E+ +Q + NIY K+TR+EPSL+AAF++YG Sbjct: 3 NKMLIDATHPEETRVVVVRGNRVEEFDFETAQRKQLRGNIYLAKVTRVEPSLQAAFIEYG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGR 87 RHGFL EI +Y+ + Sbjct: 63 GNRHGFLAFSEIHPDYYQIPVADRQA 88 >UniRef50_C6MTB8 Ribonuclease, Rne/Rng family n=1 Tax=Geobacter sp. M18 RepID=C6MTB8_9DELT Length = 937 Score = 469 bits (1205), Expect = e-130, Method: Composition-based stats. Identities = 269/944 (28%), Positives = 425/944 (45%), Gaps = 15/944 (1%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLINA EE RVA+V+ RL DLD+E G+EQ + NIYKG + R+E L+AAFVD G Sbjct: 3 KKMLINALHAEEARVAIVEDGRLVDLDVEIAGNEQTRGNIYKGVVVRVEQGLQAAFVDIG 62 Query: 62 AERHGFLPLKEIAREYFP-----ANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL 116 ++ GFL + E+ E + H RP I++VLR GQE+IVQ++K ER NKG+AL Sbjct: 63 LKKLGFLQMGELHPENWKWRDDIPEDQRHRRPRIQEVLRRGQELIVQVEKGERDNKGSAL 122 Query: 117 TTFISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGK 175 TT+ SL G Y+VLMP + A GISR++E + +R +LKE +A + +PEG G I+RT +G+ Sbjct: 123 TTYASLPGRYMVLMPGSDSA-GISRKVESEGERKKLKEIIAEMTIPEGYGYIIRTEAMGR 181 Query: 176 SAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPK 235 + + LQ DL + +E I++ + +I+QES +I+R RDY DI E+L+D+ Sbjct: 182 TRDELQKDLDNLIALYEGIREKGLAMKGAGMIYQESALIIRTIRDYFSADIDEVLVDSKD 241 Query: 236 VLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDS 295 V + R + + P F +K++ + P+FS YQ+E QI+ ++++V L SGGSI I+ Sbjct: 242 VFKDVRDALKEID-PAFEKLVKMHQEKRPIFSRYQLEEQIDLIYEKKVPLKSGGSIFIEP 300 Query: 296 TEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRH 355 TEAL +ID+NS ++T +E+TAF TNLEAA+E ARQLRLRDLGGLIVIDFIDM +H Sbjct: 301 TEALVSIDVNSGKSTGEKGVEDTAFKTNLEAAEEAARQLRLRDLGGLIVIDFIDMRDRKH 360 Query: 356 QRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRD 415 VE L+ A++ D+AR+ +S IS FGLLEMSRQR+ +L ++S CP C G G V+ Sbjct: 361 NSEVEKTLKSALKADKARVNVSRISEFGLLEMSRQRIRQTLNQASTLECPHCDGRGKVKS 420 Query: 416 NESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVP 475 E+++LS LR + A K EV +P+ +A YLLN KR ++ IE D + + Sbjct: 421 VEAMALSFLRKVHAAAAKGTIGEVVGSLPLEVAYYLLNRKRHELSQIENDYD-IEVTVKG 479 Query: 476 NDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMP 535 + +++ + +L +E + A Sbjct: 480 KPSYLLNQMELELIKREKLPQE------ELPQEKAQHGRPAKEEAAVAEPAAAEGRKKKK 533 Query: 536 DVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPA 595 A P A A P A + + + L++ ++ + ++ Sbjct: 534 KGKKAQEPEAAPHAAPHAEAAHAEAVPVALVEEPTGAEYVVTLESETEEHKKKRRRKRKR 593 Query: 596 PKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRE 655 K A + P + E + + ++ Sbjct: 594 GKGGAAEAAAEQAAAPAEAMVELPGGAPAELPEPGFVVEQPAAQGAEHGAHEPGEEGKKK 653 Query: 656 SRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRP 715 R++ + + + + A +A+ V E + E+ Sbjct: 654 RRRKRRRGKGGHDGHPAHELKPGEAAQLESAVPVAAVPVEAVPVGEAAAANEAGAEKKPA 713 Query: 716 VQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQ 775 + R + + + E A A A E AA + E K Sbjct: 714 KKRRSRGKGAAAETAPEAVAASVAASAVPAEPPTAAMHRSPATESVAAEAAKPAKKARPA 773 Query: 776 TAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASP 835 P+ + + + + + +R + P + A + Sbjct: 774 RKPKAAAAVESAAPATPAAAPVAEPTAPVEKAAKPKRGKSAKAEAPGVAVAVPAEAAVAE 833 Query: 836 ELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGV 895 + A + P + ++++ +E +E + P A EP AG Sbjct: 834 KPAEKPKTAKAPKAVKEPKELKQPKEPKEPKEAKVKEPKPAKPAKEPKAPKTAGAAEAGP 893 Query: 896 VEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQE 939 EA A+ + + AA + Sbjct: 894 AEAAAGKAKEPAKRAKKVAEPGAAAEEKPKKPRAPRKKKEETAA 937 Score = 57.2 bits (136), Expect = 3e-06, Method: Composition-based stats. Identities = 47/442 (10%), Positives = 99/442 (22%), Gaps = 10/442 (2%) Query: 576 GALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDN 635 L E+ + +A + RK ++ ++ + + + + Sbjct: 496 EKLPQEELPQEKAQHGRPAKEEAAVAEPAAAEGRKKKKKGKKAQEPEAAPHAAPHAEAAH 555 Query: 636 REENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAK 695 E + + E +K R ++ A+ + Sbjct: 556 AEAVPVALVEEPTGAEYVVTLESETEEHKKKRRRKRKRGKGGAAEAAAEQAAAPAEAMVE 615 Query: 696 ALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIV 755 + E Q + ++ + + A E Sbjct: 616 LPGGAPAELPEPGFVVEQPAAQGAEHGAHEPGEEGKKKRRRKRRRGKGGHDGHPAHELKP 675 Query: 756 QEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRY 815 EA + + +PV A E N A RRSR + + Sbjct: 676 GEAAQLESAVPVAAVPVEAVPVGEAAAANEAGAEKKPAKKRRSRGKGAAAETAPEAVAAS 735 Query: 816 RDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVP 875 P + + + + + + E Sbjct: 736 VAASAVPAEPPTAAMHRSPATESVAAEAAKPAKKARPARKPKAAAAVESAAPATPAAAPV 795 Query: 876 VAAAIEPVVSAPVVEEVAGVVEAP----------VQVAEPQPEVVETTHPEVIAAAVTEQ 925 +A + EAP +P + P+ + + Sbjct: 796 AEPTAPVEKAAKPKRGKSAKAEAPGVAVAVPAEAAVAEKPAEKPKTAKAPKAVKEPKELK 855 Query: 926 PQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEV 985 + + + A+P EP+ AE + + A+ A V Sbjct: 856 QPKEPKEPKEAKVKEPKPAKPAKEPKAPKTAGAAEAGPAEAAAGKAKEPAKRAKKVAEPG 915 Query: 986 AAEVETVAAVEPEVTVEHNHAT 1007 AA E + A Sbjct: 916 AAAEEKPKKPRAPRKKKEETAA 937 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 50/435 (11%), Positives = 102/435 (23%) Query: 622 RRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSR 681 + +EE + + Q + E + A + + ++A E + Sbjct: 486 NQMELELIKREKLPQEELPQEKAQHGRPAKEEAAVAEPAAAEGRKKKKKGKKAQEPEAAP 545 Query: 682 RRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVV 741 A EA + + E+ + +K+R+ +K + A Sbjct: 546 HAAPHAEAAHAEAVPVALVEEPTGAEYVVTLESETEEHKKKRRRKRKRGKGGAAEAAAEQ 605 Query: 742 APVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRS 801 A E + P A P V + + R Sbjct: 606 AAAPAEAMVELPGGAPAELPEPGFVVEQPAAQGAEHGAHEPGEEGKKKRRRKRRRGKGGH 665 Query: 802 PRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQRE 861 H + + E + +P+ A+ + + + + + Sbjct: 666 DGHPAHELKPGEAAQLESAVPVAAVPVEAVPVGEAAAANEAGAEKKPAKKRRSRGKGAAA 725 Query: 862 QEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAA 921 + A P + V + A+ + + +A Sbjct: 726 ETAPEAVAASVAASAVPAEPPTAAMHRSPATESVAAEAAKPAKKARPARKPKAAAAVESA 785 Query: 922 VTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPV 981 P ++ E A + + + E + V V +P + A Sbjct: 786 APATPAAAPVAEPTAPVEKAAKPKRGKSAKAEAPGVAVAVPAEAAVAEKPAEKPKTAKAP 845 Query: 982 VAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAA 1041 A + E P A P+ A A + K A Sbjct: 846 KAVKEPKELKQPKEPKEPKEAKVKEPKPAKPAKEPKAPKTAGAAEAGPAEAAAGKAKEPA 905 Query: 1042 GGHTATHHASAAPAR 1056 AA Sbjct: 906 KRAKKVAEPGAAAEE 920 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 51/427 (11%), Positives = 99/427 (23%), Gaps = 10/427 (2%) Query: 639 NRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALN 698 NR+ +Q + E + + + + + R + + ++ Sbjct: 458 NRKRHELSQIENDYDIEVTVKGKPSYLLNQMELELIKREKLPQEELPQEKAQHGRPAKEE 517 Query: 699 VEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEA 758 E ++ + + ++ + ++ EAV +VEE AE +V Sbjct: 518 AAVAEPAAAEGRKKKKKGKKAQEPEAAPHAAPHAEAAHAEAVPVALVEEPTGAEYVVTLE 577 Query: 759 PAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDE 818 K + M +P L G + + Sbjct: 578 SETEEHKKKRRRKRKRGKGGAAEAAAEQAAAPAEAMVELPGGAPAELPEPGFVVEQPAAQ 637 Query: 819 RYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAA 878 + P + + +++ E + E V V Sbjct: 638 GAEHGAHEPGEEGKKKRRRKRRRGKGGHDGHPAHELKPGEAAQLESAVPVAAVPVEAVPV 697 Query: 879 AIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQ 938 + E+ E V A+AV +P + Sbjct: 698 GEAAAANEAGAEKKPAKKRRSRGKGAAAETAPEAVAASVAASAVPAEPPTAAMHRSPATE 757 Query: 939 EVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPE 998 VA +A + + A P E AA+ + + + E Sbjct: 758 SVAAEAAKPAKKARPARKPKAAAAVESAAPATPAAAPVAEPTAPVEKAAKPKRGKSAKAE 817 Query: 999 VT----------VEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATH 1048 A AP+ V E + P E K Sbjct: 818 APGVAVAVPAEAAVAEKPAEKPKTAKAPKAVKEPKELKQPKEPKEPKEAKVKEPKPAKPA 877 Query: 1049 HASAAPA 1055 AP Sbjct: 878 KEPKAPK 884 >UniRef50_Q2GES6 Ribonuclease, Rne/Rng family n=2 Tax=Neorickettsia RepID=Q2GES6_NEOSM Length = 549 Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats. Identities = 149/540 (27%), Positives = 258/540 (47%), Gaps = 20/540 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK++LI++ E R+A++ L D E +K NIY+G + +++ SL+AAFV+Y Sbjct: 1 MKKILIDSR-DGETRLAILRSGLLVGYDCEHTNSLPQKGNIYQGIVFKVDDSLQAAFVEY 59 Query: 61 GAERHGFLPLKEIAREYF-------------PANYSAHGRPNIKDVLREGQEVIVQIDKE 107 +GFLP EI YF + + + N +V+++G + VQ+ KE Sbjct: 60 LPGEYGFLPFSEIPVIYFDLLEEVKANAIAEGKHVNLYKHFNATEVIKKGLVLFVQVTKE 119 Query: 108 ERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLEL-PEGMGL 166 +R K LT ++ L G Y VLMP +S++I + A E+ G+ Sbjct: 120 KRRTKDVTLTAYVKLPGRYCVLMPFLKDLI-LSKQIVDEQAVSRLTHFAEEEMANRKCGV 178 Query: 167 IVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDI 226 + + + + D L WE + + AP L+ +E+N++ + RD + Sbjct: 179 VFKPYCADADKKNILGDYCSLLSEWEKVVSQNDKSKAPRLVFREANLVKKFLRDSYDGSV 238 Query: 227 GEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLP 286 GE+++++ V + A+ +I + I LY+ +P+F Y++E Q++ ++ + L Sbjct: 239 GEVIVNHSDVYQEAKDYIQNSLHFEN-PNITLYSDTLPVFDKYKVEPQVDGLYEETIYLR 297 Query: 287 SGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVID 346 +G IVI++TEALTA+D+NS R + +IEETA+ N+EA EI R L LR + G++VID Sbjct: 298 NGAYIVINTTEALTAVDVNSGRMKKESNIEETAYKVNMEAVAEIVRHLELRGIAGIVVID 357 Query: 347 FIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPR 406 FIDM ++ VE L +A ++ R+R+QI+ I++FGL+ +S+QR ++ +S CP Sbjct: 358 FIDMNNSKYMLNVERALLDAFKRYRSRVQIAPINKFGLIALSKQRTKHNILDSHTVKCPC 417 Query: 407 CSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQ 466 C G G V E + R+ +EV +A + N R + E Sbjct: 418 CEGKGKVLKME---HQVRRVFSAIYTAPRCREVTVTANPELAVAVFNGYRKMLAQAEKVV 474 Query: 467 DGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQ 526 G + + + K + + E+ + E + + E Sbjct: 475 GGSIVFKIDEKLGLAKGFEIAFHGKDDVEILREDQVLTTVEDQSNEKTVTEGSSVVKVES 534 >UniRef50_C3WSU7 Ribonuclease G n=6 Tax=Fusobacterium RepID=C3WSU7_9FUSO Length = 458 Score = 468 bits (1203), Expect = e-130, Method: Composition-based stats. Identities = 136/480 (28%), Positives = 228/480 (47%), Gaps = 27/480 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK+ LI + E ++AL++ +L ++ IE ++ NIYKGK+ I + E FVD Sbjct: 1 MKKYLILSKSVYETKLALLEDNKLDEMYIERNNKKEITGNIYKGKVVDILNNGEIIFVDI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G E++ FL N + NI ++IVQ + E R KGA LT Sbjct: 61 GLEKNAFLSF---------ENKKDISKYNID------DKLIVQAETEPRDEKGAKLTLDY 105 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 S+ G LVL+P + IS++I+ ++ LK S GLI+RT GKS E Sbjct: 106 SINGENLVLLP-KSKNLSISKKIKDIEEVNRLKNIFLST----DNGLILRTNSEGKSEEN 160 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 L + I K E L++ + N I++ + +ID+ + + Sbjct: 161 LLEEYRRLENIDNQINKDFEKINV-GLLY-DVNSILKKVVALFDDSTEKFIIDDEHIFKE 218 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + + +G+ D K++ Y + +F +Y I SQIE A R+V L SG I+I+ TEAL Sbjct: 219 IKYLLEEIGKKDLIKKLRKYFKDEDIFEYYNINSQIERALDRKVYLDSGAYIIIEKTEAL 278 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +ID+N+ + T +E F TNLEA EIARQ++LR+L G+I+IDFIDM +++ + Sbjct: 279 ISIDVNTGQNTGNKTSQEIIFQTNLEATKEIARQIKLRNLAGIIIIDFIDMKKFSNKKRI 338 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 + ++ + +D+ I + GL++ +R+R L C C G G + + Sbjct: 339 LEKFKKYLSKDKVEINSVEYTNLGLIQFTRKRQGKELALYYREKCQYCEGIGYFLSKDRI 398 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIA----SYLLNEKRSAVNAIETRQDGVRCVIVP 475 L++L + + ++ +++ I Y+ N K + + G + + Sbjct: 399 ILNLLEDLNNQIKSQDIKKIVIRTKKDIIKELNKYIDNNKIEYIEDNNFYKIGYKMELYN 458 >UniRef50_C7LYB0 Ribonuclease, Rne/Rng family n=1 Tax=Acidimicrobium ferrooxidans DSM 10331 RepID=C7LYB0_ACIFD Length = 457 Score = 468 bits (1203), Expect = e-130, Method: Composition-based stats. Identities = 145/424 (34%), Positives = 231/424 (54%), Gaps = 9/424 (2%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESP--GHEQKKANIYKGKITRIEPSLEAAFVDYG 61 + + VA+++G+ L + NIY G++ + P +EAAF+D G Sbjct: 38 QMAVHVHGDVTHVAILEGRSLIQHAVSRASDTETSVVGNIYLGRVVNVLPGMEAAFIDIG 97 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFIS 121 ++ L ++ E G I+ +LR Q ++ Q K +KGA LT +S Sbjct: 98 TAKNAVLYRGDVRYEREDLEGLGDGA-RIEQLLRPKQVIVCQAVKNPIAHKGARLTQEVS 156 Query: 122 LAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQ 181 L G + VL+P R+ GIS+R+ +R L+ + L +PEG G+I+RTA G + L+ Sbjct: 157 LPGRFAVLVP-GQRSVGISKRLPDQERRRLRGLVEDL-VPEGFGVILRTAAEGATRAELE 214 Query: 182 WDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELAR 241 D++ + W+ I + A + AP L++QE VR R+ Q+ + ID+ + E Sbjct: 215 RDITQLVGMWQRIDELARTEHAPALLYQEPPAAVRVIREEFSQEFRSVAIDDRALYEDVA 274 Query: 242 QHIAALGRPDFSSKIKLYTGE---IPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 +++ + P+ + +++ Y E +P+F Y ++ Q+ A +R V LPSGGS+VID EA Sbjct: 275 RYVQTIS-PELADRVEYYDAEAEGVPIFQRYHVQHQLAKALERTVWLPSGGSLVIDRAEA 333 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 LT ID+N+AR +EET NLEA +EIARQLRLRD+GG+IVID +DM +++ Sbjct: 334 LTVIDVNTARNVGAVSLEETIHRNNLEAVEEIARQLRLRDIGGIIVIDVVDMVDPQNRDD 393 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 V R A+ +D+ R + +S GL++M+RQR+S L ES CP C G G V D + Sbjct: 394 VMRAFRAALARDKTRTHVYDMSPLGLIQMTRQRISEGLVESLSSTCPTCHGQGYVLDEDV 453 Query: 419 LSLS 422 ++ Sbjct: 454 VASR 457 >UniRef50_C1PAJ8 Ribonuclease, Rne/Rng family n=1 Tax=Bacillus coagulans 36D1 RepID=C1PAJ8_BACCO Length = 492 Score = 468 bits (1203), Expect = e-130, Method: Composition-based stats. Identities = 145/487 (29%), Positives = 242/487 (49%), Gaps = 12/487 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M R +I + E R A+++ ++ + I PG K NIY GK+ ++P + AAF+D Sbjct: 1 MDRSIIINVKTREKRYAVIENGKVSGIRIRQPGDAAKVGNIYLGKVADVKPGINAAFIDI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G RHG+L + + N + P I L GQ V+VQ+ K+E G KG LT I Sbjct: 61 GGIRHGYLHISRLPAFANSKNSN----PTISAYLSPGQTVMVQVKKDETGQKGPLLTGII 116 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 L+G +V +P +S++ + DR + + P+ G+IVRTA + + Sbjct: 117 ELSGEQIVYLPEGKYT-AVSKKADDADRNRWRNRVRKALEPQ-EGIIVRTAAIHAGGDGW 174 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 + +L ++ + + A AP ++H++S V FR+ +R G +++D+ + L Sbjct: 175 RDELKCLRLRYKCLLEKAAQLKAPAVLHEKSTVEAEIFRELVRLKSGTVIVDDAEALARL 234 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + GRP+ +LY+G+ +F+ Y+I+ +E A +R V L +G +VID TEALT Sbjct: 235 KA--LLAGRPELDWSFELYSGKQNIFTRYRIDRTLEDALKRVVWLENGAYLVIDETEALT 292 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ID+N+ + T D ET TNL AA EI RQL+LRD GG+I++DFIDM + V Sbjct: 293 IIDVNTGKYTGTTDQAETVLKTNLLAAKEIGRQLKLRDYGGIILVDFIDMQRDEQRAQVR 352 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 L + + D + +I+ + G+L+M+R++ SL E+ VCP C G+G + E+L+ Sbjct: 353 AVLEKELENDEKQTRITGFTELGILQMTRKKTRKSLPEALLSVCPVCGGSGKIESPETLA 412 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIET---RQDGVRCVIVPND 477 + R + E + + V + E + +E + P+ Sbjct: 413 FRLERELWEAPYA-DYEAVLIECTQDVKDCFCGETDVHLKRLENLLGMKLIFHITRDPHP 471 Query: 478 QMETPHY 484 + Sbjct: 472 FYAIRQF 478 >UniRef50_C8WCX7 Ribonuclease, Rne/Rng family n=3 Tax=Zymomonas mobilis RepID=C8WCX7_ZYMMN Length = 912 Score = 466 bits (1198), Expect = e-129, Method: Composition-based stats. Identities = 210/781 (26%), Positives = 334/781 (42%), Gaps = 12/781 (1%) Query: 71 KEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLM 130 + + I+DV+R Q ++VQ+ KEERGNKGAALTT++SLAG Y VLM Sbjct: 129 DSLENLRNRRRHFGRHHYRIQDVIRRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLM 188 Query: 131 PNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLK 189 PN GGISR+I DR LK +A L LP MG IVRTAG+ ++ ++ D + + Sbjct: 189 PNTSNGGGISRKISNLADRKRLKSIMAELNLPSSMGCIVRTAGLQRTKTEIKRDFDYLAR 248 Query: 190 HWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGR 249 W+ I++ AP LI+ +S+++ RA RD ++I EIL++ AR + L Sbjct: 249 LWDEIREKTLLSQAPALIYGDSDLVKRAIRDIYSREIDEILVEGDDGYRAARNFMK-LLM 307 Query: 250 PDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARA 309 P K++ Y PLF + +E+Q+ + +Q V+L SGG +VI+ TEAL +IDINS R+ Sbjct: 308 PSHVRKVRPYADPAPLFQRFGVEAQLNAMYQPIVQLKSGGYLVINPTEALVSIDINSGRS 367 Query: 310 TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQ 369 TR +IE+TA TNLEAA EIARQLRLRD+ GLIVIDFIDM + R VE +++A++ Sbjct: 368 TREHNIEQTATATNLEAAAEIARQLRLRDMAGLIVIDFIDMESSANIRRVEKAMKDALKH 427 Query: 370 DRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEE 429 DRARIQ+ HIS FGL+EMSRQRL + E+S CP C G+G + S L LR+IE+ Sbjct: 428 DRARIQVGHISSFGLMEMSRQRLRTGMLEASTVPCPHCQGSGLMLTTPSAGLMALRMIED 487 Query: 430 EALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRV 489 EA + N ++H + + A Y+LN+KR + +IET GV +I + V Sbjct: 488 EASRGNGSQIHVLTSLDSAIYVLNKKRKELGSIETLY-GVTILIDGDPLRGNNQISVESA 546 Query: 490 RKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAP 549 + EEE + + + P + A Sbjct: 547 GPPPSHGLMLPPPLPTSSPDEIDDYEEEPEIEEIEAEEVIEA------PFRRNHRQNMAR 600 Query: 550 VVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRR 609 + +P ++ F + S E+++ + + + ++ Sbjct: 601 RNSSYNAEVAIQDNQRMEPKEATQAFLNTEEDASHEEDSEHSRRNRRSRRGRRGGRRRNG 660 Query: 610 KPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTA 669 + + + E + +E ++ AE ++ E Sbjct: 661 ENFAEKPLMLSSEASEATSPDEDTPIKESYESEALPVEKDVAEKSTPTEETSEAENKTAR 720 Query: 670 DEQQAPRRERSRRRNDDKRQAQQEA---KALNVEEQSVQETEQEERVRPVQPRRKQRQLN 726 + R + + + + E +V E + EE + + + Sbjct: 721 SSRTRRRPRARSPKVESESYQAPANVLHEETPPTETAVVEVKNEEPIAEKPATEAETAVV 780 Query: 727 QKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNA 786 E + T + + E + ++ Sbjct: 781 ASSEPETVEETKPKRVRKRTTTTRRKKAEPKTADKAEESEDSEAEAKPKRPATRRTRTTK 840 Query: 787 DNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRY 846 + S + + + + + +S P A + + Sbjct: 841 AATAKVAAKKAETESETPVVAKAEAKTVEKTDDTAIKSETPKDSDAAPVSDSKEEAEKPV 900 Query: 847 P 847 P Sbjct: 901 P 901 Score = 91.5 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 40/82 (48%), Positives = 52/82 (63%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 +MLI+A +EE RVA++ G R+ + D ES Q K NIY K+TR+EPSL+AAFVDYG Sbjct: 5 KMLIDARHREETRVAVIKGNRIEEFDFESADRRQLKGNIYLAKVTRVEPSLQAAFVDYGG 64 Query: 63 ERHGFLPLKEIAREYFPANYSA 84 R GFL EI +Y+ Sbjct: 65 NRQGFLAFSEIHPDYYQIPRED 86 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 23/184 (12%), Positives = 42/184 (22%), Gaps = 2/184 (1%) Query: 879 AIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDV-AVA 937 A + +E + E + + + A Sbjct: 607 AEVAIQDNQRMEPKEATQAFLNTEEDASHEEDSEHSRRNRRSRRGRRGGRRRNGENFAEK 666 Query: 938 QEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEP 997 + +E I+E E+ + V + +E + + Sbjct: 667 PLMLSSEASEATSPDEDTPIKESYESEALPVEKDVAEKSTPTEETSEAENKTARSSRTRR 726 Query: 998 EVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARP 1057 + +APA E P E A T A A + P Sbjct: 727 RPRARSPKVESESYQAPANVLHEETPPTETAVVE-VKNEEPIAEKPATEAETAVVASSEP 785 Query: 1058 QPVE 1061 + VE Sbjct: 786 ETVE 789 >UniRef50_B9JDP7 Ribonuclease E protein n=3 Tax=Alphaproteobacteria RepID=B9JDP7_AGRRK Length = 960 Score = 464 bits (1193), Expect = e-129, Method: Composition-based stats. Identities = 217/712 (30%), Positives = 328/712 (46%), Gaps = 5/712 (0%) Query: 79 PANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGG 138 + I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GG Sbjct: 244 RVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGG 303 Query: 139 ISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKA 197 ISR+I DR LKE LE+P GMG+I+RTAG ++ ++ D + ++ WE ++ Sbjct: 304 ISRKITNPQDRKRLKEIAKMLEVPLGMGVILRTAGANRTKVEVKRDFEYLMRLWENVRTL 363 Query: 198 AESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIK 257 + AP L+++E ++I R+ RD +DI E+++ + A+ + L P + ++ Sbjct: 364 TLASTAPCLVYEEGSLIKRSIRDLYNKDISEVIVSGEEGYREAKDFMKML-MPSHAKVVQ 422 Query: 258 LYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEE 317 Y P+FS IE+Q++ Q +V L SGG ++++ TEAL +ID+NS R+TR IE+ Sbjct: 423 PYRDIHPIFSRSGIEAQLDRMLQPQVTLKSGGYLIMNQTEALVSIDVNSGRSTREHSIED 482 Query: 318 TAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQIS 377 TA TNLEAADE+ARQLRLRDL GLIVIDFIDM R+ RAVE +L+E ++ DRARIQ+ Sbjct: 483 TALQTNLEAADEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKNDRARIQVG 542 Query: 378 HISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQ 437 IS FGLLEMSRQR+ S+ ES+ VC C G+G VR S++L +LR IEE LK T Sbjct: 543 RISHFGLLEMSRQRIRASVLESTTQVCSHCGGSGHVRSQSSVALHVLRGIEEYLLKNTTH 602 Query: 438 EVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPT 497 ++ IA YLLN KR + E+R GV +I ++ + H+ + R E Sbjct: 603 DITVRTTPEIALYLLNHKRQTIVDYESRF-GVAIIIGADNAVGAQHFAIDRGEPVENPVK 661 Query: 498 LSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKA 557 + + A+ E+ ++ P A + + Sbjct: 662 IETLFNFAAIPEDDDDDIVIEADEDEDEELEEKAASVEQAPVARSSETNDGNRKRKRRRR 721 Query: 558 APATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRR 617 Q S+ + + +E D ++ RR Sbjct: 722 RRGGRGNEVQTA--SQPGDTSAEDGDEDGDEGDEDDNNENSEVSAVSGSDEDAQQKRKRR 779 Query: 618 DRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRR 677 R +R R+ EG N + E A + A+ + A Sbjct: 780 RRGKRGGRRNRDGEGEGNELAAGEESGSDEGADGEDDGENDVAVTVAEIVIAEGEAAVES 839 Query: 678 ERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAE 737 + + + ++ K + + E PV + E +VA Sbjct: 840 QPAMAAVETASTVTEDVKPAKSRSRRKPKAEASPVEAPVVEAAPVADAEAETVTEIAVAL 899 Query: 738 EAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNR 789 + PVV A + P+ +T + Sbjct: 900 DTPAEPVVAAEPEAAKPARANRESNVSSSSEPVVKSTRTNEGTDSDGKPKKA 951 Score = 89.2 bits (219), Expect = 7e-16, Method: Composition-based stats. Identities = 40/86 (46%), Positives = 55/86 (63%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+A+ +EE RV +V G R+ + D ES +Q + NIY K+TR+EPSL+AAFVDYG Sbjct: 3 DKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVDYG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGR 87 RHGFL EI +Y+ + Sbjct: 63 GNRHGFLAFAEIHPDYYQIPLADRQA 88 >UniRef50_C9M9G5 Ribonuclease G n=1 Tax=Jonquetella anthropi E3_33 E1 RepID=C9M9G5_9BACT Length = 495 Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats. Identities = 152/508 (29%), Positives = 254/508 (50%), Gaps = 27/508 (5%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 ++ N +EE RVA+V+ RL DL +E Q+ +IY ++ I + AAF++ G Sbjct: 6 KIYANMLDEEERRVAVVEDGRLRDLYVEHGRPVQQSGDIYLARVESIVSGMNAAFLNLGD 65 Query: 63 ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISL 122 R+GFL L + + E E+IVQ+ K R +KGA +T +SL Sbjct: 66 GRNGFLYLADAKGF----------------SVHENGELIVQVTKTPRRSKGARVTPQVSL 109 Query: 123 AGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQ 181 G + V +P + G+SR+I DR L+ + S+ E G+I+RTA + E L Sbjct: 110 PGRFFVYLPFA-GSVGVSRKIGSAKDRQRLRALVGSV---ERGGVIIRTAAQDAADEDLA 165 Query: 182 WDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELAR 241 DL+ + WE I+++A+ R +P ++ QE ++RA RD L I E++ D+ + + + Sbjct: 166 ADLAQLQEQWERIEQSAKLRMSPGVLWQEDGFLIRALRDELAHHISEVVTDSREAFDAVK 225 Query: 242 QHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTA 301 ++A G +S ++ L I LF + + +IES + +V LPSGG +VID TEALTA Sbjct: 226 GFVSAAGA-GWSGQVSLLEKGIDLFEYCGLTQEIESLIRPKVLLPSGGYLVIDQTEALTA 284 Query: 302 IDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVEN 361 ID+NS + G + T TNLEAA EIARQ+RLR +GG++++DFIDM + AV + Sbjct: 285 IDVNSGKCVDGSSLSATVKTTNLEAAREIARQIRLRAIGGIVIVDFIDMESEADRTAVLD 344 Query: 362 RLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSL 421 L++A D ++++ ++ GL E++R+R L C C G +E+L+ Sbjct: 345 ALKDASAADPNKVRVYGMTSLGLAEVTRKRTRLDLRSQMTQPCSSCC-EGRTWKDEALAA 403 Query: 422 SILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMET 481 S+ R + + ++ + +A + + E G R V+ Sbjct: 404 SVKRRLRKAFAGSSSGWALVAMNDELAQIVAQ---KWLKGWEETF-GRRIVLRGLPGASR 459 Query: 482 PHYHVLRVRKGEETPTLSYMLPKLHEEA 509 + + + + T + + E + Sbjct: 460 TDWRIEALGDSRKILTQAQSPWEREEPS 487 >UniRef50_A8F3K6 Ribonuclease, Rne/Rng family n=1 Tax=Thermotoga lettingae TMO RepID=A8F3K6_THELT Length = 470 Score = 463 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 143/458 (31%), Positives = 237/458 (51%), Gaps = 19/458 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M L+ Q+E++ VA++ L ++ E E NIY G+I +I P L AAFV+ Sbjct: 1 MANQLVINIQEEKVNVAILSDGVLQEIFSEE--DESLSGNIYVGRIEKIIPGLNAAFVNI 58 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+GFL L +I ++Y + ++EG +++VQ+ + G KG LT I Sbjct: 59 GGNRNGFLKLTDITKQYISEVTKSP--------VKEGIKILVQVKHDAIGTKGPQLTGKI 110 Query: 121 SLAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 SLAG +LV P + G+S+++ E +R L+E SL + G+++RTA E Sbjct: 111 SLAGRFLVYFP-LSKVRGVSKKVQEPKERVRLQELSRSLA--KNDGVVIRTAAEFVPEEY 167 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + + + W + ++ + L+ +E + R+ L +DI E+ ++ ++ E Sbjct: 168 VAEEFNQLKSEWRKVLQSFKRARKIKLLRREPTTVDYILRERLNKDIDEVHVNTREIYEK 227 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 ++ + K +Y E LF I SQI +R + LPSGG I +D+TEA+ Sbjct: 228 VKE-----VSKRLAKKPMIYFFEGDLFDKLCIYSQIGQLQERIIHLPSGGYIALDTTEAM 282 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T D+NSA + + A+ TN+EAA EIARQLRLR++GG++++DFIDM + + Sbjct: 283 TVFDVNSASFVSEKNHADLAYKTNVEAAYEIARQLRLRNIGGIVIVDFIDMPSKTYYDRL 342 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 L++A+R D A I++ ++ GLLEM+R+R SPS+ + CP C GTG V + Sbjct: 343 TKELQQAIRNDSAHIELIGFTKLGLLEMTRKRRSPSIDQLLFSGCPICKGTGRVVSPHIV 402 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRS 457 ++ + + V I+ ++ Y K+S Sbjct: 403 VRRVINELSKIENISEYSSVKVILHQRLSGYTEKIKKS 440 >UniRef50_B6JHD4 Ribonuclease E (RNase E) n=19 Tax=Alphaproteobacteria RepID=B6JHD4_OLICO Length = 1123 Score = 463 bits (1190), Expect = e-128, Method: Composition-based stats. Identities = 221/700 (31%), Positives = 327/700 (46%), Gaps = 8/700 (1%) Query: 71 KEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLM 130 + E + + I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLM Sbjct: 404 DDALEEVPERTFRPRRQYKIQEVIKRRQVMLVQVVKEERGNKGAALTTYLSLAGRYAVLM 463 Query: 131 PNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLK 189 PN R GGISR+I DR LK+ + L++PEGMG+I+RTAG ++ ++ D + ++ Sbjct: 464 PNTARGGGISRKITSAQDRNRLKDVVQDLDVPEGMGIILRTAGASRTKPEIKRDFEYLIR 523 Query: 190 HWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGR 249 WE ++ AP L+++E ++I R+ RD ++I E+L+ + AR + L Sbjct: 524 MWETVRDLTLKSQAPTLVYEEGSLIKRSLRDLYNKEIDEVLVSGEEGYHEARDFMKML-M 582 Query: 250 PDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARA 309 P +KLY PLFS +ESQ+++ F V L SGG +VI+ TEAL +ID+NS R+ Sbjct: 583 PSNVRAVKLYRDNQPLFSRMGVESQLDAMFSPVVTLRSGGYLVINQTEALVSIDVNSGRS 642 Query: 310 TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQ 369 TR IE+TA TNLEAA+E+ARQLRLRDL GLIVIDFIDM R+ RAVE +L + +RQ Sbjct: 643 TREHHIEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMDEKRNNRAVERKLSDCLRQ 702 Query: 370 DRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEE 429 DRARIQ+ IS FGLLEMSRQR+ S+ ESS CP C G G VR S++L +LR +EE Sbjct: 703 DRARIQVGRISHFGLLEMSRQRIRASVLESSTEPCPTCGGIGHVRSVASVALQLLRSLEE 762 Query: 430 EALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRV 489 + +K T +A Y+LN KR + +E + + + + Sbjct: 763 QLMKSGTHNYTVRTRTDVALYVLNHKRGHLRDLE---EAFQVTLAVIADPTVGGQQAFVI 819 Query: 490 RKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAP 549 +GE+ T+ L A P E E + + + T Sbjct: 820 ERGEQVHTVEAAKALLAARVAAQPVEVEEFDAEEEFFEEETETESAENGDTETADAQGEN 879 Query: 550 VVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRR 609 + + S +A + + +E +EA R ++ Sbjct: 880 EDGNRRRRRRRRGRGRGEGREASAQSAEGEASTGEDTQAEASEDGEEDSEAASARGEENG 939 Query: 610 KPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTA 669 + R R R RR + G + +A + +A+ + + A Sbjct: 940 ERRPRRRGRRGGRRRRGNGNGNGDEATATAGEADTEAGEASADEGTPHNLSMPSFDAPQP 999 Query: 670 DEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKV 729 D E + A A + E ++ R V+ + V Sbjct: 1000 DISVPIATEN---ESTPAPAATAPTAAAPEADAPAHEEDKAPRRSTVREKVSFFFGEPPV 1056 Query: 730 RYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVP 769 E A A EE AA V+ P+ Sbjct: 1057 ADTAPATEAAPAAAATEEQAAAPAPVETTPSESASNELAS 1096 Score = 76.1 bits (185), Expect = 7e-12, Method: Composition-based stats. Identities = 39/86 (45%), Positives = 54/86 (62%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+AT EE RV +V G R+ + D ES +Q + NIY K+TR+EPSL+AAF++YG Sbjct: 109 NKMLIDATHPEETRVVVVRGNRVEEFDFESAQRKQLRGNIYLAKVTRVEPSLQAAFIEYG 168 Query: 62 AERHGFLPLKEIAREYFPANYSAHGR 87 RHGFL EI +Y+ + Sbjct: 169 GNRHGFLAFSEIHPDYYQIPVADRQA 194 >UniRef50_Q31PW1 Ribonuclease, Rne/Rng family n=19 Tax=Cyanobacteria RepID=Q31PW1_SYNE7 Length = 808 Score = 462 bits (1188), Expect = e-128, Method: Composition-based stats. Identities = 179/771 (23%), Positives = 303/771 (39%), Gaps = 25/771 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + ++ A Q A+ ++ + + H + +IY G + + P ++AAFV+ Sbjct: 55 MPKQIVIAEQHRI--AAVFAEDQIEEFIVAKGTH--QIGDIYLGVVENVLPGIDAAFVNI 110 Query: 61 GA-ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G E++GF+ + ++ I ++L Q+V+VQ+ KE +KG LT Sbjct: 111 GDSEKNGFIHVTDLGPLRLR-----RSAGAITELLAPQQKVLVQVMKEPTSSKGPRLTGN 165 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ISL G YLVLMP + +SRRI + AL+ L P GMGL+VRT G + E Sbjct: 166 ISLPGRYLVLMPYSSGV-SLSRRIMSESERNRLRALSVLIKPAGMGLLVRTEADGIAEEL 224 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + DL + WE + A+S PAP L+ ++ + I R RD + + I++D+ L+ Sbjct: 225 IIEDLESLQRQWEQTLQLADSTPAPALLTRDDDFIQRVLRDMYDEGVNRIVVDSHTGLKR 284 Query: 240 ARQHIAALGRPDFSS--KIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 +QH++A G + + I+ Y + ++++ + I A + V LPSGG ++I+ TE Sbjct: 285 VKQHLSAWGAGEIAPGLLIEQYRDRSSILDYFRVNAAIREALKPRVDLPSGGYVIIEKTE 344 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 ALT +D+NS TR ET TN EAA EIARQLRLR++ G+I++DFIDM R Q Sbjct: 345 ALTVVDVNSGSFTRSATARETVLWTNCEAAAEIARQLRLRNIAGVIIVDFIDMDSRRDQL 404 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRD-- 415 V A+R D++R QIS +S GL+E++R+R ++ E C C G G V Sbjct: 405 QVLEHFTRALRHDKSRPQISQLSELGLVELTRKRQGQNIYELFSTPCTTCGGLGHVAHLP 464 Query: 416 NESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVP 475 E + I+R + + + + + S + R GV ++ Sbjct: 465 GEVGAQPIVRTSDRPPITTPVATTTPVSASTNLAPSNDSYLSPARSALARATGVPPLL-- 522 Query: 476 NDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMP 535 TP + L P+ + P ++ Sbjct: 523 --NETTPASELENNGDSYSGLGLLERSPQRRGRRRGGGRNAGPSLPNTGINPEISA---- 576 Query: 536 DVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPA 595 A A + + +T + + + E+ A Sbjct: 577 SPGLAEALAATTRDSAPERDRDSESTGMSRRPRRQPPEPPVIVAVELTLEEQELYAWMGA 636 Query: 596 PKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQ--TAET 653 + + +E+ + D R +RR + + E Sbjct: 637 SPLIRAESLPEPSQPVLVGVYAQESEKEPAIAAAKALYDQRSRHRRGGGDSGRPTLAREN 696 Query: 654 RESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERV 713 RE+ ++ ++ + P + S + A E + T E Sbjct: 697 RETASAESSESRSDSSSTAETPAEQPSSITTEGATSAVTAEVIAASEPTPAEPTPAEPTP 756 Query: 714 RPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTE 764 P + V AP E + + ++ Sbjct: 757 AEPTPAEPTPVEPTPAPVAVASEASEVTAPASEVPAPGRRRRRSSAQRESQ 807 Score = 51.1 bits (120), Expect = 3e-04, Method: Composition-based stats. Identities = 32/222 (14%), Positives = 58/222 (26%), Gaps = 3/222 (1%) Query: 835 PELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEV-- 892 PE+++ +D E R+ E + P + V + E+ Sbjct: 572 PEISASPGLAEALAATTRDSAPERDRDSESTGMSRRPRRQPPEPPVIVAVELTLEEQELY 631 Query: 893 AGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDV-AVAQEVAEQAEPVVEPQ 951 A + +P+ AE PE + V A ++P + + P Sbjct: 632 AWMGASPLIRAESLPEPSQPVLVGVYAQESEKEPAIAAAKALYDQRSRHRRGGGDSGRPT 691 Query: 952 EETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMT 1011 + E + ++ A+ A + + E T A + P Sbjct: 692 LARENRETASAESSESRSDSSSTAETPAEQPSSITTEGATSAVTAEVIAASEPTPAEPTP 751 Query: 1012 RAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAA 1053 P P A P A+ A Sbjct: 752 AEPTPAEPTPAEPTPVEPTPAPVAVASEASEVTAPASEVPAP 793 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 32/249 (12%), Positives = 57/249 (22%), Gaps = 12/249 (4%) Query: 734 SVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGG 793 + + A + P +A T + E + D+ G Sbjct: 545 ERSPQRRGRRRGGGRNAGPSLPNTGINPEISASPGLAEALAATTRDSAPERDRDSESTGM 604 Query: 794 MPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQD 853 R R+ P + E Y PL A + PE + + Y ++ Sbjct: 605 SRRPRRQPPEPPVIVAVELTLEEQELYAWMGASPLIRAESLPEPSQPVLVGVYAQESEKE 664 Query: 854 VQVEEQRE------------QEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQ 901 + + + A+A + E P Sbjct: 665 PAIAAAKALYDQRSRHRRGGGDSGRPTLARENRETASAESSESRSDSSSTAETPAEQPSS 724 Query: 902 VAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVV 961 + T + +P + EP P ++ EV Sbjct: 725 ITTEGATSAVTAEVIAASEPTPAEPTPAEPTPAEPTPAEPTPVEPTPAPVAVASEASEVT 784 Query: 962 ETAEVVVAE 970 A V A Sbjct: 785 APASEVPAP 793 >UniRef50_Q3J4J9 RNAse E n=6 Tax=Rhodobacteraceae RepID=Q3J4J9_RHOS4 Length = 936 Score = 460 bits (1184), Expect = e-128, Method: Composition-based stats. Identities = 212/663 (31%), Positives = 322/663 (48%), Gaps = 3/663 (0%) Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G + + +++A E R I++V++ Q ++VQ+ KEERGNKGAALTT++ Sbjct: 182 GDDEIESVADEDVAEEIPAPRKPRSRRYKIQEVIKVRQIMLVQVVKEERGNKGAALTTYL 241 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 SLAG Y VLMPN R GGISR+I DR +LKE + LE+PEG GLI+RTAG ++ + Sbjct: 242 SLAGRYCVLMPNTARGGGISRKITQAADRKKLKEIASELEVPEGAGLIIRTAGAKRTKQE 301 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 ++ D + L+ WE I+ AP I++E ++I R RD ++I E+L++ Sbjct: 302 IRRDYEYLLRLWEQIRDLTLKSVAPAPIYEEGDLIKRTIRDLFNREIEEVLVEGETGYRT 361 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 A+ + + P + ++ Y +PLF+ YQ+ES + F V+L SGG IVI TEAL Sbjct: 362 AKDFMRMI-MPAHARQVIRYDEPMPLFARYQVESYLSGMFNPVVQLKSGGYIVIGVTEAL 420 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 AID+NS RAT+ G IEETA TNLEAA+E+ARQLRLRDL GLIVIDFIDM ++ AV Sbjct: 421 VAIDVNSGRATKEGSIEETALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEERKNNAAV 480 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 E RL++ ++ DRARIQ+ IS FGL+EMSRQRL P + ES+ C C GTG +R ++SL Sbjct: 481 EKRLKDKLKTDRARIQVGRISGFGLMEMSRQRLRPGMLESTTQPCAHCHGTGLIRSDDSL 540 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 +L +LR +EEE ++ ++EV P+ + ++L+N KR + IE R G+ + + + Sbjct: 541 ALQVLRQLEEEGTRKRSKEVLLRAPIAVVNFLMNSKREHIAMIEARY-GMAVRVEADPSL 599 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPP 539 +P Y + + + + + + M P +E + E + Sbjct: 600 SSPDYVIEKFKTATRVVPEAVKVISGSADLMGAPVDEPEDDWVEEEPEIVEEAEEVADAA 659 Query: 540 APTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAE 599 P+E + ++ G+ E A Sbjct: 660 EAAPSEGQPKKKRRRRRRRRNGVNGANGSDAQENGDEGDESDEDEGDAADEPEAVEAAAA 719 Query: 600 AKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQ 659 + + + + +R R + + T E Sbjct: 720 VPELAPEAVVSAPEPAAAEPEPTPADPVAAPAAEEPAAPRKRTRTRKPKVTEEAPAEAAA 779 Query: 660 AEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPR 719 E + ++ R+R K A EA +V ET E + + Sbjct: 780 EAPAEAPAAEAPAKEAKKPRTRTSRSRKTAAAAEAVPAVEVAVTVDETPAEASLEIARTT 839 Query: 720 RKQ 722 Sbjct: 840 EAA 842 Score = 96.5 bits (238), Expect = 5e-18, Method: Composition-based stats. Identities = 41/86 (47%), Positives = 54/86 (62%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLI+AT EE RV +VDG ++ + D E+ Q NIY K+TR+EPSL+AAFVDYG Sbjct: 3 KKMLIDATHPEETRVVVVDGNKVEEFDFETVNKRQLAGNIYLAKVTRVEPSLQAAFVDYG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGR 87 RHGFL EI +Y+ + Sbjct: 63 GNRHGFLAFAEIHPDYYQIPVADRKA 88 >UniRef50_Q0G6Z6 Ribonuclease E and G n=2 Tax=Rhizobiales RepID=Q0G6Z6_9RHIZ Length = 1013 Score = 460 bits (1183), Expect = e-127, Method: Composition-based stats. Identities = 207/732 (28%), Positives = 344/732 (46%), Gaps = 6/732 (0%) Query: 71 KEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLM 130 ++ E I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLM Sbjct: 279 EDALEEVPVRQARPRKNYKIQEVIKRRQILLVQVVKEERGNKGAALTTYLSLAGRYSVLM 338 Query: 131 PNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLK 189 PN R GGISR+I DR L++ + L++P GMG+I+RTAG ++ ++ D + ++ Sbjct: 339 PNTARGGGISRKITNQADRKRLRDVVKELDVPRGMGIILRTAGANRTKAEVKRDYEYLMR 398 Query: 190 HWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGR 249 WE+++ AP L+++E ++I R+ RD +DI +IL+ A+ + L Sbjct: 399 LWESVRTLTLQSIAPSLVYEEGSLIKRSIRDLFNKDIDQILVSGEAGYREAKDFMRML-M 457 Query: 250 PDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARA 309 P + ++ Y P+F+ IE+Q++ Q V L SGG I+I+ TEAL AID+NS R+ Sbjct: 458 PSQAKAVQPYRDATPIFTRQGIEAQLDKMLQPHVTLKSGGYIIINQTEALVAIDVNSGRS 517 Query: 310 TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQ 369 TR IE TA+ TNLEAA+EIARQLRLRDL GLIV+DFIDM R+ R VE ++++ ++ Sbjct: 518 TREMSIENTAYQTNLEAAEEIARQLRLRDLAGLIVVDFIDMDEKRNNRNVEKKMKDCLKN 577 Query: 370 DRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEE 429 DRARIQ+ IS FGL+EMSRQR+ S+ ES+ CP C G G VR SL+L +R IE+ Sbjct: 578 DRARIQVGKISHFGLMEMSRQRIRASVLESTMRPCPVCEGAGMVRATSSLALHAIRHIED 637 Query: 430 EALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRV 489 K +++ VP A ++LNEKR ++ +E D +R I + + + + Sbjct: 638 YLQKNKGRDLIVKVPTETALFILNEKRHHIDELEQNHD-LRIFIEADPSVGHNDLSIEQG 696 Query: 490 RKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAP 549 T +++ P A+ +E+ E+ + + Sbjct: 697 GVASRPITRNFVSPISVAAEDAVDEDEDADVEISEEETGTSEARDDSESSDDNNEGRSKG 756 Query: 550 VVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRR 609 + + + G + S + E + R++ R Sbjct: 757 RGRRRRRRRGGSDGDDNENGGNEQQASDSSNASSDDVDNSDDESQDSDGSSGRRRRRRGR 816 Query: 610 KPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTA 669 + + +R +++ + + E + +D + ++ + Q R+S ++ E ++ Sbjct: 817 RGGRRHRDGNDKQAEGQIESDQDNDQQSDDADGAEEENSQGRRRRQSNWGSKSDEDTKST 876 Query: 670 DEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKV 729 ++ A E + A++ S + ++ V + + +K Sbjct: 877 EKSDA---EPDGSATEPSDTGVGAMPAIDPAAPSTADERFDDPVATLIGEAAEAGSAEKA 933 Query: 730 RYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNR 789 E+S + T + + A A K E + DN Sbjct: 934 ATEESSESTPASDRDEDNTPSNDNERSTAGAADESGEKKDEKPKQAALTEPVVTSGEDNG 993 Query: 790 DNGGMPRRSRRS 801 + RR+ Sbjct: 994 GPKQEETKPRRT 1005 Score = 75.0 bits (182), Expect = 2e-11, Method: Composition-based stats. Identities = 38/92 (41%), Positives = 57/92 (61%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+++ EE RV +V G R+ + D ES +Q K NIY K+TR+EPSL+AAF++YG Sbjct: 3 NKMLIDSSHPEETRVVVVRGNRVEEFDFESEHKKQLKGNIYLAKVTRVEPSLQAAFIEYG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKDV 93 RHGFL EI +Y+ + +++ Sbjct: 63 GGRHGFLAFSEIHPDYYQIPKADREALLAEEM 94 >UniRef50_C2KPN3 Ribonuclease G n=3 Tax=Actinomycetaceae RepID=C2KPN3_9ACTO Length = 817 Score = 460 bits (1182), Expect = e-127, Method: Composition-based stats. Identities = 166/590 (28%), Positives = 276/590 (46%), Gaps = 11/590 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 +KR ++ + +VAL++ L + + N+Y GK+ + S+EAAFVD Sbjct: 229 VKREMVVRGRDGLNQVALLEDGLLVEHYVSRHTQTTMVGNVYLGKVQNVLSSMEAAFVDI 288 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + N I++ L G V+VQ+ K+ G+KGA LT+ I Sbjct: 289 GKGRNAVLYAGEVNWDAAGLNSKTG---RIEEALSPGDMVLVQVTKDPIGHKGARLTSQI 345 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LAG +LVL+P+ GISR++ ++R LK L ++ +P G G+IVRTA G + E L Sbjct: 346 TLAGRHLVLVPSGAMT-GISRKLPEEERKRLKTVLKTM-IPAGFGVIVRTAAEGATEEQL 403 Query: 181 QWDLSFRLKHWEAI-KKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + D+ +K WE I KK A R +P L+H E + VR RD +DI + I + Sbjct: 404 RVDVERLVKIWEDIEKKRARPRNSPQLLHAEPELAVRVVRDIFNEDISSLTIQGEEAWHT 463 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 +++ L P+ ++ + + +F+ ++I+ Q+ F+R+V LPSGG ++ID TEA+ Sbjct: 464 ISKYVKELS-PELGERLHFWEDDSDVFAAHRIDEQLAKGFERKVWLPSGGYLIIDRTEAM 522 Query: 300 TAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 T ID+N+ R GG +EET NLEAA+EI RQLRLRD+GG++VIDF+DM ++ Sbjct: 523 TVIDVNTGRYIGAGGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVIESNRDL 582 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 V RL E + +DR R Q++ ++ GL++M+R+R+ L E+ C C G G + + Sbjct: 583 VLRRLVECLGRDRTRHQVTEVTSLGLVQMTRKRVGQGLVEAFSTQCECCDGRGFIVHDVP 642 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRS--AVNAIETRQDGVRCVIVPN 476 + + + E+ N + + + K + V Sbjct: 643 VENNG-QAPEDVVKHSNRRGSSGGATNRKRNVAKSVKETKPEVRQTMAGIAAAAHAQEEP 701 Query: 477 DQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPD 536 + + + + E A ++ A + + A A Sbjct: 702 TESQATTTKGKSGATKKTKSAGGVQTSESSEITTAADTDTAIATKAPTKTTAKKRSAKEL 761 Query: 537 VPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGE 586 PA A +A + + G + +G + Sbjct: 762 ERAKEKPALTAGETKREITSSAVPGTTPTRRRHRRAVSTGVINTDSTGAD 811 >UniRef50_C0ZAL2 Putative ribonuclease G n=1 Tax=Brevibacillus brevis NBRC 100599 RepID=C0ZAL2_BREBN Length = 491 Score = 459 bits (1179), Expect = e-127, Method: Composition-based stats. Identities = 139/494 (28%), Positives = 247/494 (50%), Gaps = 13/494 (2%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 + + +TQ +R+A ++ +L + + +IY+G+I ++P +++AFVD G Sbjct: 2 KQVAISTQGGSIRIAFMENGKLQEWRTQDVRSHASVGDIYQGRIADVKPGIQSAFVDIGT 61 Query: 63 ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISL 122 ++ +L + + +PNI + + GQ+V+VQ+ KE K +T ISL Sbjct: 62 GQNAYLYVDDT----VGVESGGTAKPNIAERVHVGQKVLVQVSKEAMEMKAPKITMRISL 117 Query: 123 AGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQW 182 G YLV +P + +SR+I D + + + + S + +G G I+RT + L Sbjct: 118 QGRYLVYLP-TEESISLSRKISDDTKRKRLQQVISSTVEQGEGCILRTEAAEAEEQTLIR 176 Query: 183 DLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQ 242 +L++ W+ +++ AE + I Q++ +I A RD L + E+L++ + + Sbjct: 177 ELTYLRNRWQDMRRTAEGLRSTGRIFQDAELIEVALRDGLANGMDELLVEGAATHQQVKA 236 Query: 243 HIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAI 302 +AA P+ K++ Y G+ PLF + +E+++ A R+V L SGGS+VID TEA+T I Sbjct: 237 ALAAFA-PEVQEKLRWYQGKQPLFDYLGVEAELIRARDRQVPLKSGGSLVIDRTEAMTVI 295 Query: 303 DINSARATR--GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 D+N+ T G E+ TNLEA EIARQLRLRD+GG+++IDFIDM ++ V Sbjct: 296 DVNTGSFTGAGGQQREQAVTATNLEAVAEIARQLRLRDIGGIVIIDFIDMKEQGNKERVI 355 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 +RL++ + +D + ++ GL+EM+R+R+ SL E C C+G G V + L Sbjct: 356 SRLKQELAKDPVPSTVLGMTSLGLVEMTRKRVRASLMERLTEPCEACAGRGRVWRVDELL 415 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 + + A ++ + +P + + +++ V M Sbjct: 416 RRLYVEVTALAKSQDAEAALVDMPPRLLDMIEAWEKAEAVTWP-----VHVYKRLVPSMS 470 Query: 481 TPHYHVLRVRKGEE 494 + + V E Sbjct: 471 PDEFRIGYVGNRAE 484 >UniRef50_B3QZC2 Ribonuclease, Rne/Rng family n=12 Tax=Chlorobiaceae RepID=B3QZC2_CHLT3 Length = 582 Score = 457 bits (1176), Expect = e-126, Method: Composition-based stats. Identities = 130/423 (30%), Positives = 213/423 (50%), Gaps = 4/423 (0%) Query: 78 FPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAG 137 N I L+ ++VQ+ KE NKGA LT+ I++AG ++VL+P Sbjct: 158 EKRNRRMSYTQMIASKLKPNDSILVQVIKEPISNKGARLTSDITIAGRFMVLLPFGSGHL 217 Query: 138 GISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKA 197 IS+RI + + LP+G G IVRT + L+ DL L W+ I++ Sbjct: 218 AISKRIVNRRERRRLKGIVRSILPKGFGAIVRTVAEEQDELLLKTDLEKLLAKWKQIEET 277 Query: 198 AESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIK 257 + P LI +E +I RD L +D+ E++ ++ + + + P+ ++ Sbjct: 278 VKDAKPPKLIFKEDTMISSVLRDSLTEDVTELVTNSQHIYKETLTFVR-WAAPEMEKRVS 336 Query: 258 LYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEE 317 Y G++PLF Y I +ES F R+V L SGG ++I+ TEA+ ID+NS R + EE Sbjct: 337 HYKGKLPLFESYGIAKDVESIFSRKVWLKSGGYLIIEHTEAMVVIDVNSGRYAAKREQEE 396 Query: 318 TAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQIS 377 + TNLEAA EI+RQLRLRD+GG+IV+DFID+ ++ R V + ++ R+DRA+ I Sbjct: 397 NSLKTNLEAAKEISRQLRLRDIGGIIVVDFIDLLDEKNARKVYDTMKTEFRRDRAKSNIL 456 Query: 378 HISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENT- 436 +S FGL++++R+R+ PSL + CP C G+G V+ + I R + + AL N Sbjct: 457 PMSEFGLMQITRERIRPSLMQRMGDECPACGGSGVVQARHTTIHQINRWLRKYALNGNHA 516 Query: 437 -QEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEET 495 + + V +A L + + + + +D + + + + + Sbjct: 517 FERLDLYVSQTVAQPLFQDAMNPQWKWFLQHLLF-VNVKTDDSLRSDDFRFYLSKNHSDV 575 Query: 496 PTL 498 T Sbjct: 576 TTE 578 Score = 98.8 bits (244), Expect = 1e-18, Method: Composition-based stats. Identities = 24/73 (32%), Positives = 43/73 (58%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 +K+ L+ +E++VALV+ RL ++ IE P + +IY G++ ++ L+AAF+D Sbjct: 4 VKKQLLMNKSGDEVQVALVEDGRLAEVFIERPESTRNVGDIYLGRVQKVVEGLQAAFIDI 63 Query: 61 GAERHGFLPLKEI 73 G GFL ++ Sbjct: 64 GHSSDGFLHFSDV 76 >UniRef50_Q1K0W4 Ribonuclease, Rne/Rng family n=1 Tax=Desulfuromonas acetoxidans DSM 684 RepID=Q1K0W4_DESAC Length = 952 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 263/933 (28%), Positives = 422/933 (45%), Gaps = 17/933 (1%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLINAT EE RVA+V+ L +LDIES GH+Q K NIYKG++ R+E L+AAF+DYG Sbjct: 20 KKMLINATLPEEDRVAIVEDGILTELDIESAGHQQTKGNIYKGEVIRVEQGLQAAFIDYG 79 Query: 62 AERHGFLPLKEIA---REYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 A+R GFL + EI ++ RP I ++L+ GQ+++VQ+ KEERG KGAALTT Sbjct: 80 AQRPGFLQIGEIHPSLYPKRDDEGQSNRRPPITEILKRGQQILVQVVKEERGTKGAALTT 139 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSA 177 +SL G Y+VL+P + + GISR+I+ D R E+K L+SLELP+ MG I+RTA + + Sbjct: 140 EVSLPGRYMVLIPQSS-SRGISRKIDNDHVRKEIKNTLSSLELPDNMGYIIRTAAIDQPP 198 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 E L+ D + L + +I +E AP LI+QESN+++R+ RDY +I E+LID+ +V Sbjct: 199 EELKRDFDYLLNTYNSIVSHSEKAKAPALIYQESNLVLRSIRDYFSPEIDEVLIDDREVF 258 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 + AR A+ P++ +KL+ P+F+ YQIE QI V LPSGGSIV+D TE Sbjct: 259 QEARDFFKAV-MPEYMPLVKLHQERRPIFARYQIEEQISHLSSNTVNLPSGGSIVLDQTE 317 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 AL AID+NS + D+E TA NLEAA E+ARQLRLRD+GGLIVIDFIDM R+ R Sbjct: 318 ALVAIDVNSGKMGGEQDVEATAHRVNLEAAIEVARQLRLRDMGGLIVIDFIDMRQRRNAR 377 Query: 358 AVENRLREAVRQDRARIQISHIS-RFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDN 416 VE L+ A++ D+AR+ + IS +FGLLEMSRQR+ +LGE S+++CP C G+G +R + Sbjct: 378 EVEKALKNALKIDKARVTVGRISHQFGLLEMSRQRIKANLGEGSYNMCPHCQGSGRIRSD 437 Query: 417 ESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPN 476 ES S+++LR I+ K + + V + A+YLLN KR + +E R + I + Sbjct: 438 ESRSIALLRRIQAGTAKGHIEAVVCTAALDTANYLLNNKRRELYDLEQRYKLI-IEIKGD 496 Query: 477 DQMETPHYHVLRVRKGEETPTLSYMLPKL------HEEAMALPSEEEFAERKRPEQPALA 530 + V++ E + E A + + ++ +Q Sbjct: 497 PGYLPEQVDIEFVKQSREQRQENRNDQGPLVDTDLSERANIEVVLPDASSAEQGDQENAQ 556 Query: 531 TFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKP 590 + P + + + +S+ + + Sbjct: 557 KEEKDEEAPRKSSRRRRRSNRRRNDRNRRSEETNDETAADVSQSDADQDQDKAAQTQAPQ 616 Query: 591 TEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQT 650 + + E P ++ Q N E + + ++ +Q Sbjct: 617 QSEAPSQPEQPPIAEKSSEPEPQENTPKSGENSEETDKAKAPRKPARRRPARKKAPAKQD 676 Query: 651 AETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQE 710 +T + + + A S ++++K + + + + + + Sbjct: 677 EQTEQPSSEENAAAGSSQPTVSTASEPAESDAKDEEKPKRRAPRRKPAATSAATEAKTEN 736 Query: 711 ERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPL 770 + + + + R + E + ++ AP + Sbjct: 737 ATTEVTEETKPAPRRRRATRKTTTADTTTTAEAATETDKKSTEASEKKAAPAKRTTRRKT 796 Query: 771 PVVAQTAPEQQEENNADNRDNGGMPRRS---RRSPRHLRVSGQRRRRYRDERYPTQSPMP 827 A + + E + D P + RR + + + ++ T + Sbjct: 797 TTKAAPSSQTTEPESTQTDDTADKPEKKPVRRRRTTAKKATEKAAETTTEQPAETTAEGA 856 Query: 828 LTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAP 887 + + + E E++ + AA E Sbjct: 857 EETPKKKTTRRRTTTTKKAVNDTEKTAETGETAEKKPTRRRTTRKTTTEKAAEEETPKKT 916 Query: 888 VVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAA 920 + + A +P+ E Sbjct: 917 ARSKKSTEKAAEEGEEKPKRRAPRKKKVEPAPE 949 Score = 79.2 bits (193), Expect = 8e-13, Method: Composition-based stats. Identities = 52/450 (11%), Positives = 106/450 (23%), Gaps = 8/450 (1%) Query: 584 GGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNR 643 + + + + + Q + R E + E D + + Sbjct: 501 PEQVDIEFVKQSREQRQENRNDQGPLVDTDLSERANIEVVLPDASSAEQGDQENAQKEEK 560 Query: 644 RQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQS 703 + + + R R ++ R ++E + + D+ Q + + ++ Sbjct: 561 DEEAPRKSSRRRRRSNRRRNDRNRRSEETNDETAADVSQSDADQDQDKAAQTQAPQQSEA 620 Query: 704 VQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRT 763 + EQ Q + + + A + + Sbjct: 621 PSQPEQPPIAEKSSEPEPQENTPKSGENSEETDKAKAPRKPARRRPARKKAPAKQDEQTE 680 Query: 764 ELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQ 823 + + P + D + RR+PR + + E T+ Sbjct: 681 QPSSEENAAAGSSQPTVSTASEPAESDAKDEEKPKRRAPRRKPAATSAATEAKTENATTE 740 Query: 824 SPMPLTVACASPELASGKVWIRYPIVRPQDV-----QVEEQREQEEVHVQPMVTEVPVAA 878 A E ++ + + A Sbjct: 741 VTEETKPAPRRRRATRKTTTADTTTTAEAATETDKKSTEASEKKAAPAKRTTRRKTTTKA 800 Query: 879 AIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQ 938 A + P + + P + + E A TEQP T Sbjct: 801 APSSQTTEPESTQTDDTADKPEKKPVRRRRTTAKKATEKAAETTTEQPAETTAEGAEETP 860 Query: 939 EVAEQAEPVVEPQEE---TADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAV 995 + ++ T E ETAE + AE +T + Sbjct: 861 KKKTTRRRTTTTKKAVNDTEKTAETGETAEKKPTRRRTTRKTTTEKAAEEETPKKTARSK 920 Query: 996 EPEVTVEHNHATAPMTRAPAPEYVPEAPRH 1025 + P RAP + V AP Sbjct: 921 KSTEKAAEEGEEKPKRRAPRKKKVEPAPET 950 Score = 51.5 bits (121), Expect = 2e-04, Method: Composition-based stats. Identities = 32/287 (11%), Positives = 58/287 (20%), Gaps = 3/287 (1%) Query: 771 PVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTV 830 P +Q N P + E+ ++ Sbjct: 501 PEQVDIEFVKQSREQRQENRNDQGPLVDTDLSERANIEVVLPDASSAEQGDQENAQKEEK 560 Query: 831 ACASPELASGKVWIRYPIVRPQDVQVEE---QREQEEVHVQPMVTEVPVAAAIEPVVSAP 887 +P +S + ++ + EE + + + A P S Sbjct: 561 DEEAPRKSSRRRRRSNRRRNDRNRRSEETNDETAADVSQSDADQDQDKAAQTQAPQQSEA 620 Query: 888 VVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPV 947 + + EPQ ++ + + + Sbjct: 621 PSQPEQPPIAEKSSEPEPQENTPKSGENSEETDKAKAPRKPARRRPARKKAPAKQDEQTE 680 Query: 948 VEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHAT 1007 EE A T E A+ + E E+ Sbjct: 681 QPSSEENAAAGSSQPTVSTASEPAESDAKDEEKPKRRAPRRKPAATSAATEAKTENATTE 740 Query: 1008 APMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAP 1054 PAP + + T A T AAP Sbjct: 741 VTEETKPAPRRRRATRKTTTADTTTTAEAATETDKKSTEASEKKAAP 787 Score = 43.0 bits (99), Expect = 0.062, Method: Composition-based stats. Identities = 36/253 (14%), Positives = 71/253 (28%), Gaps = 13/253 (5%) Query: 804 HLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQE 863 +V + ++ R++R ++ V E A+ +V + Q Q Q+E++ Sbjct: 501 PEQVDIEFVKQSREQRQENRNDQGPLVDTDLSERANIEVVLPDASSAEQGDQENAQKEEK 560 Query: 864 EVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVT 923 + + + EE A V ++ + + + Sbjct: 561 DEEAPRKSSRRRRRSNRRRNDRNRRSEETNDETAADVSQSDADQDQDKAAQTQAPQQ--- 617 Query: 924 EQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVA 983 +E+ Q + EPQE T E E + A + + A A Sbjct: 618 ------SEAPSQPEQPPIAEKSSEPEPQENTPKSGENSEETDKAKAPRKPARRRPARKKA 671 Query: 984 EVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGG 1043 + +T E + A + E+ + + A K AA Sbjct: 672 PAKQDEQTEQPSSEE----NAAAGSSQPTVSTASEPAESDAKDEEKPKRRAPRRKPAATS 727 Query: 1044 HTATHHASAAPAR 1056 A Sbjct: 728 AATEAKTENATTE 740 >UniRef50_D0JBK5 Ribonuclease G n=2 Tax=Blattabacterium RepID=D0JBK5_BLASB Length = 510 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 142/522 (27%), Positives = 244/522 (46%), Gaps = 39/522 (7%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + LI +++E+ +AL++ +L +L + + +IY G + +I L AA +D Sbjct: 1 MNKELIINAEEQEVEIALLEEGQLLELHRDVFNKKFSVGDIYLGIVKKILYGLNAAIIDI 60 Query: 61 GAERHGFLPLKEI--------------AREYFPANYSAHGRPNIKDVLREGQEVIVQIDK 106 G + FL ++ + + R +I +L GQ ++VQI K Sbjct: 61 GHSKGAFLHYNDLGFQINKILELISMNRKFFSNNFEKKENRNSIDKILHPGQRILVQISK 120 Query: 107 EERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLELPEGMG 165 E NKG LT+ I + G YL+L+P + + IS++I+ + + L + + P G Sbjct: 121 EPISNKGPKLTSKICIPGRYLILIPFSEKI-SISKKIKNAKEESRLLSYIRKI-KPHEFG 178 Query: 166 LIVRTAGVGKSAEALQWDLSFRLKHWEA-IKKAAESRPAPFLIHQESNVIVRAFRDYLRQ 224 +I+RTA K E L +L F +K W+ +K + P P + E + RD Sbjct: 179 IIIRTASHNKREEVLNEELIFLIKKWKKTLKNLIKLPPPPVRVLSEISKTSCLLRDTFND 238 Query: 225 DIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVR 284 D I +N + + +++ + P+ + IK Y G IP+F Y IE QI+ R V Sbjct: 239 DFKSIYCNNNFLCQEIHSYLSLIA-PEKINIIKYYKGNIPIFEKYGIEKQIQIFLGRNVP 297 Query: 285 LPSGGSIVIDSTEALTAIDINSA------RATRGGDIEETAFNTNLEAADEIARQLRLRD 338 L +G ++I+ TEAL ID+NS + + + NL AA EIARQLRLRD Sbjct: 298 LENGAYLIIEHTEALHVIDVNSGMNNHMKKNCTESERIDNILKINLLAATEIARQLRLRD 357 Query: 339 LGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGE 398 +GG+IV+DFIDM+ ++ + L+E ++ DRA+ +I ++FGL++ +R R+ P L Sbjct: 358 MGGIIVVDFIDMSEPIQRKQLYEHLKEKMKNDRAKHKILPPNKFGLVQFTRHRVRPELKV 417 Query: 399 SSHHVCPRCSGTGTVRDNESLSLSILRL---IEEEALKENTQEVHAIVPVPIASYLLNEK 455 + ++ + +S I RL +E +N Q++ + +++YL Sbjct: 418 NINNE----------KSKDSPIHYIHRLEFVLESIIKNKNHQKIQLHIHSFVSAYLKKGF 467 Query: 456 RSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPT 497 S + I+P D Y + + + Sbjct: 468 PSIQQKWLLKYKK-WIQIIPRDSFGYTEYKIFNENHEIISSS 508 >UniRef50_Q2GKZ9 Ribonuclease, Rne/Rng family n=10 Tax=Anaplasmataceae RepID=Q2GKZ9_ANAPZ Length = 636 Score = 457 bits (1175), Expect = e-126, Method: Composition-based stats. Identities = 172/470 (36%), Positives = 263/470 (55%), Gaps = 13/470 (2%) Query: 79 PANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPN-NPRAG 137 H +++V++ Q+++VQI KEERG+K A +T+I LAG Y + MPN + Sbjct: 156 KGKLVPHKMYKVQNVIKVDQKLMVQITKEERGSKCATFSTYIVLAGRYCIFMPNSGNKNS 215 Query: 138 GISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKK 196 GISRRI+ R LKE L ++LP+ G+I+RTAG ++ + L+ DLS+ W+ +K Sbjct: 216 GISRRIDDCVHRKNLKEFLDEMKLPKEAGVIIRTAGSNRTHKELERDLSYLQSTWDEVKS 275 Query: 197 AAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKI 256 + ES P L++ E++VI R RD+ +++ ++++ K L +++ ++ ++ Sbjct: 276 SFESVTHPSLLYVEADVIKRTLRDFCDENVHDVVVAGSKAFGLVKEYAKSMFGNRL--RV 333 Query: 257 KLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIE 316 + Y G IP+F+HY++ +QI + ++ LPSGG +VI TEAL +ID+NS R T IE Sbjct: 334 RTYKGSIPIFTHYRVNAQILELYTDKIYLPSGGYLVITPTEALVSIDVNSGRMTGEDSIE 393 Query: 317 ETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQI 376 ETA+ TN+EA EIARQ+ LR L GLIVIDFIDM R+ RAVE +REA + D+A+IQ Sbjct: 394 ETAYRTNMEAVKEIARQVNLRGLSGLIVIDFIDMVKYRYCRAVEAEVREAFKGDKAKIQF 453 Query: 377 SHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENT 436 +IS FGL+E+SRQR+ S+ +SS C C G G R ES+S SILR + A K Sbjct: 454 GYISAFGLMEISRQRVKQSILDSSTVQCHHCKGVGRTRSLESISASILRDVSYVANKNPE 513 Query: 437 QEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETP 496 + + V + S+L N KR + IE+ V + +D + Y++ + Sbjct: 514 KILVVSVVSSVVSHLFNSKRRQIAEIESEF-KVLIRLDVDDNLGISDYNIRAEKGYSSLL 572 Query: 497 TLS--------YMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVP 538 K EEA LP+E ++ E A ++ V Sbjct: 573 HEELSSAVVVTADSVKKKEEAAELPAEGTDHQKSLAENVAEVGESVVAVT 622 Score = 98.5 bits (243), Expect = 1e-18, Method: Composition-based stats. Identities = 35/85 (41%), Positives = 53/85 (62%), Gaps = 1/85 (1%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKA-NIYKGKITRIEPSLEAAFVDY 60 KR+LI+A +E+RVA++D ++ + D E +Q + NIY + RIEPSL+A F++Y Sbjct: 11 KRILIDAVYLDEIRVAVLDEGKVVEFDQELKDRKQLRGGNIYFAVVRRIEPSLQAVFIEY 70 Query: 61 GAERHGFLPLKEIAREYFPANYSAH 85 G +HGFLP EIA E++ Sbjct: 71 GVGKHGFLPFSEIAVEHYQIPQEEK 95 >UniRef50_UPI00003842F2 COG1530: Ribonucleases G and E n=1 Tax=Magnetospirillum magnetotacticum MS-1 RepID=UPI00003842F2 Length = 836 Score = 456 bits (1173), Expect = e-126, Method: Composition-based stats. Identities = 216/643 (33%), Positives = 321/643 (49%), Gaps = 7/643 (1%) Query: 71 KEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLM 130 + E I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLM Sbjct: 163 GDDDVENERRRARLLRNYKIQEVIKRRQIMLVQVVKEERGNKGAALTTYLSLAGRYCVLM 222 Query: 131 PNNPRAGGISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLK 189 PN R GG+SR+I DR LK +++P+GM +I+RTAG +S ++ D + L+ Sbjct: 223 PNTARGGGVSRKIVSATDRRRLKSIANEMDIPDGMAVIIRTAGSERSKTEIKRDYEYLLR 282 Query: 190 HWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGR 249 W+++++ AP L+++E+++I R+ RD +DI E+L+D + LA+ ++ L Sbjct: 283 MWDSVRELTLKSSAPALVYEEASLIKRSIRDLYSRDIDEVLVDGDEGYRLAKDYMRMLT- 341 Query: 250 PDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSAR 308 P + K++ Y + P+F YQ+E+Q+++ V+L SGG IVI TEAL AID+NS R Sbjct: 342 PSHAKKVQPYKDPVMPMFHRYQVEAQLDAMHSPVVQLKSGGYIVISQTEALVAIDVNSGR 401 Query: 309 ATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVR 368 AT+ IEETA TN+EAADE+ARQLRLRDL GLIVIDFIDM R+ AVE RL+EA++ Sbjct: 402 ATKERHIEETALKTNMEAADEVARQLRLRDLAGLIVIDFIDMEENRNNHAVERRLKEALK 461 Query: 369 QDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIE 428 DRARIQ+ IS FGLLE+SRQRL PSL E++ CP C GTG VR ES ++ ILR IE Sbjct: 462 NDRARIQVGKISAFGLLELSRQRLRPSLQETTFSPCPHCGGTGLVRSVESAAVHILRAIE 521 Query: 429 EEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLR 488 EE ++ + EV V IA Y+LN+KRSA+ AIE R + + +D + P + + + Sbjct: 522 EEGIRRRSSEVTVYVSSAIALYILNQKRSALAAIEERYE-FDVFLSGDDTLIPPAFRMDK 580 Query: 489 VRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAA 548 V+ + + + E + + A P+ P P Sbjct: 581 VKAEFRPDEPARTAISM--DDAVHRPPAEPEADEAEPEDEEEVEARPERAPRARDERPRE 638 Query: 549 PVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPA-PKAEAKPERQQD 607 P + + + G + E + + Sbjct: 639 DRGEEDPDSEAGRKRRRRRRRRRKPGDDRPEQAEGEGGSEEELPPTEGESEAEDDEAEGE 698 Query: 608 RRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKAR 667 R D R+ R R R E + S + AE Sbjct: 699 GEGTRTEGGDDDQPRKRRRGRRGGRRRRRREGEGEGEAGEGGETAEAGSGETAESLSDTP 758 Query: 668 TADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQE 710 A+ + AP+ + A +++ + + E Sbjct: 759 AAEGETAPQESAEGEAASAEEAAPAAEVEKPKRKRAPAKKKAE 801 Score = 89.2 bits (219), Expect = 8e-16, Method: Composition-based stats. Identities = 42/84 (50%), Positives = 54/84 (64%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 MLI+AT EE RV +V+G RL +LD+E+ Q K NIY K+ R+EPSL+AAFV+YG Sbjct: 1 MLIDATHPEETRVVVVNGTRLEELDVETSTKRQLKGNIYLAKVVRVEPSLQAAFVEYGGN 60 Query: 64 RHGFLPLKEIAREYFPANYSAHGR 87 RHGFL EI +YF + Sbjct: 61 RHGFLAFSEIHPDYFQIPVADRQA 84 >UniRef50_B2V9I2 Ribonuclease, Rne/Rng family n=4 Tax=Hydrogenothermaceae RepID=B2V9I2_SULSY Length = 470 Score = 456 bits (1172), Expect = e-126, Method: Composition-based stats. Identities = 140/444 (31%), Positives = 220/444 (49%), Gaps = 18/444 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M R LI + +++ +L IE ++ +IYKGK+ R ++EA FVD Sbjct: 1 MDRKLIVTKGFKNTFYLILEDNIPVELKIEDIEISKQTGSIYKGKVLRYSQAMEAFFVDI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++ FLP K+I E + +G ++VQ+ + KGA L+ I Sbjct: 61 GEDKEAFLPKKDICEEVCKN-------------IDKGSSILVQVKRSPVSTKGAKLSCKI 107 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEG-DDRTELKEALASLE---LPEGMGLIVRTAGVGKS 176 SL G YLVL+P + IS + E D+R E+KE + +L E GLI+RTA Sbjct: 108 SLPGKYLVLLPQSKGKISISSKYEDNDERNEIKERIKNLLHEINQENFGLIIRTAAKDAP 167 Query: 177 AEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKV 236 EA+ D F ++ W I+K + AP +I++E RDY EI+ D+ + Sbjct: 168 DEAILEDFKFLIELWNQIQKDYNKKKAPSVIYEEPFKAFAILRDYAG-SFSEIISDDVSI 226 Query: 237 LELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDST 296 L+L ++ + + LF Y+++ I L SG +VI T Sbjct: 227 LKLIKKFVLENFTNANIKMTPYRKRKESLFYEYELDKLINKILSPYAYLKSGSYLVIQET 286 Query: 297 EALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 EAL ID+NS + ++EETAF NLEA EI RQ+RLRDL G++VIDFIDM H+ Sbjct: 287 EALVVIDVNSGSCHKQKNLEETAFRINLEAIPEIVRQIRLRDLSGIVVIDFIDMINQEHK 346 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDN 416 A+ RL+E ++D+ ++I +++ GLLE+SR++L SL + C C G G ++ Sbjct: 347 EAIVERLKEEFKKDKRPVKIKGLTQLGLLELSRKKLEESLIKQLSDYCQHCYGRGYIKSQ 406 Query: 417 ESLSLSILRLIEEEALKENTQEVH 440 + + + + I + + + Sbjct: 407 DVVIFELEKTINKLKPFAKMKIII 430 >UniRef50_A9BIJ0 RNA binding S1 domain protein n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIJ0_PETMO Length = 471 Score = 455 bits (1171), Expect = e-126, Method: Composition-based stats. Identities = 128/427 (29%), Positives = 237/427 (55%), Gaps = 21/427 (4%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 ++ ++ + EE+R+A+++ +L ++ E ++ I+ G I PSLEA FV+ G Sbjct: 4 EKTMLVSKALEEIRIAILEEDKLSEIFFEDFETDRNIGKIFLGIIENRVPSLEAFFVNIG 63 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFIS 121 ++GFL +++ + + + G +++VQ+ K+ KG L+ IS Sbjct: 64 LGKNGFLRYRDVLDDP--------------NQYKVGDKILVQVRKDGGTRKGPQLSMQIS 109 Query: 122 LAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 L G YLV +PN+ + GISR+I + +R L++ + + + +I RT G + + Sbjct: 110 LPGKYLVYIPNSNESIGISRKILQEKERIRLRQVAKKILI-DNESIIFRTNSEGIDEKEV 168 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 + +LS K + +I + S+ P ++++ES+ + R+ L +I+ D+ ++ Sbjct: 169 EVELSEMRKMYNSILQRFHSQKNPGVLYEESDFLEYILRERLDSKTKKIITDDRQIFRKL 228 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++ + + K++ G +F + I Q+E F +++ L GG+I +D TEALT Sbjct: 229 KKSLKGF---ELKPKVEFVRG--DVFQIHNIYHQMEEIFTKKIELSGGGTITVDRTEALT 283 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AID++SA G +IEET+F TN+EAA EIARQL+LR++GG+IV+DFIDM H++ + Sbjct: 284 AIDVDSAGNLEGKNIEETSFITNMEAAKEIARQLKLRNIGGMIVVDFIDMKDSSHKKTII 343 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N L+E ++D++++ I + GLLE+ R+R + L + + CP C GTG + + Sbjct: 344 NILKEESKKDKSKVTILGFTNMGLLEIIRKRTTQPLDTNVYSQCPLCHGTGKIIAPSLVH 403 Query: 421 LSILRLI 427 +++ + Sbjct: 404 GRLIKEL 410 >UniRef50_C5EUP6 Ribonuclease G n=1 Tax=Clostridiales bacterium 1_7_47FAA RepID=C5EUP6_9FIRM Length = 393 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 118/404 (29%), Positives = 193/404 (47%), Gaps = 15/404 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M R LI + + A V G R+ L +E NIY GK+ ++ ++ AAFVD Sbjct: 1 MDR-LIVTQLNDRVCTAAVSGSRITQLMMEPEDSSSLLNNIYIGKVQKVVGNINAAFVDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R G+ L E F + + L+ G E++VQ+ ++ K LT + Sbjct: 60 GGGRTGYYSLDENKEHLFVSPSTGK--------LKAGDEIVVQVSRDAVKTKAPVLTGKL 111 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEG--MGLIVRTAGVGKSA 177 + G Y VL G S +I + + ++ L +G G+IVRT G G + Sbjct: 112 AFTGRYCVLTAGKTGV-GFSNKIGDNKYKARVRSMLNEALAEDGDRFGIIVRTNGAGATD 170 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 E L + + + K A R I++ + A RD + I+ D P Sbjct: 171 EVLLQEYRQLKDMYLKLSKEASCRTCYSCIYRALPGYIAAIRDSYSGTLDGIVTDIPAYY 230 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDST 296 E + ++ D + K+ LY ++ PL Y ++S +E A + V L SGG +VI+ T Sbjct: 231 EELKDYLEKYQAED-ADKLTLYEDKLLPLSKLYSLDSALEHALNKHVWLKSGGYLVIEPT 289 Query: 297 EALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 EA+ ID+N+ + + +++T N+EAADEI RQLRLR+L G+I+IDFIDM + Sbjct: 290 EAMVVIDVNTGKYSGKKKMQDTICRINMEAADEIGRQLRLRNLSGIILIDFIDMEREEDR 349 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESS 400 + L + V +D + + ++R L+E++R+++ L E Sbjct: 350 EMLMRHLGDVVSKDPVKTTVVDMTRLNLVEVTRKKVRKPLYEQI 393 >UniRef50_Q2G5W8 Ribonuclease E n=8 Tax=cellular organisms RepID=Q2G5W8_NOVAD Length = 935 Score = 455 bits (1170), Expect = e-126, Method: Composition-based stats. Identities = 224/714 (31%), Positives = 323/714 (45%), Gaps = 4/714 (0%) Query: 74 AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 A E + R I+DV++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN+ Sbjct: 193 ADELRAKRMALRRRYKIQDVIQRRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLMPNS 252 Query: 134 PRAGGISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWE 192 GGISR+I DR LK ++ LELP M IVRTAG+ ++ ++ D + + W+ Sbjct: 253 SHGGGISRKINSASDRKRLKTIISELELPRSMSCIVRTAGLQRTKPEIKRDFDYLARLWD 312 Query: 193 AIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDF 252 I++ AP LIH +S++I RA RD +DI E++++ A+ + L P Sbjct: 313 EIRERTMKSVAPALIHSDSDLIKRAIRDIYNRDIEEVVVEGEHGYRAAKDFMK-LLMPSH 371 Query: 253 SSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRG 312 + ++K Y +PLF Y E Q+ + + V+L SGG +VI+ TEAL +IDINS R+T+ Sbjct: 372 AKRVKAYADPVPLFQRYGAEDQLTAMYDPVVQLKSGGYLVINPTEALVSIDINSGRSTKE 431 Query: 313 GDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRA 372 IE+TA TNLEAA EIARQLRLRD+ GL+VIDFIDM + R VE +++A++ DRA Sbjct: 432 HGIEQTAVATNLEAAREIARQLRLRDMAGLVVIDFIDMEYGSNIRKVEKAMKDALKNDRA 491 Query: 373 RIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEAL 432 RIQ+ IS FGL+EMSRQRL + E++ CP C G+G VR S LS LRLIE+EA Sbjct: 492 RIQVGRISGFGLMEMSRQRLRTGVLEATTRACPHCDGSGLVRTASSAGLSALRLIEDEAA 551 Query: 433 KENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKG 492 K V A Y+LN KR+ + IE R GV ++P + E V R Sbjct: 552 KGKGNVVTLYASQEAAVYVLNAKRADLAEIEERY-GVTVEVIPEGENEGAKMRVA-SRGP 609 Query: 493 EETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVA 552 + + EE + E E P A D Sbjct: 610 KPEFVPRFEPIVEPEEDDVVEDAYEDEEEVEERAPRGNRAAEGDEGERSDGRRKRRKRRR 669 Query: 553 PAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPR 612 + L A G E + + + +R +R+ R Sbjct: 670 GRNRDRREDGTDGEVETSLDDAEADTDADAEGDEAEGNEAATSDENADENDRGPRKRRRR 729 Query: 613 QNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQ 672 RR E + ++++ + ++ + A E+ Sbjct: 730 GRRRRGGRENGENGADQSGHDEAEGDDAGAAEAVAEAAEAPAAEEAPAAAEPAVEPVVEE 789 Query: 673 QAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYE 732 + +R+R++ + A + E E V P + +R +KV Sbjct: 790 APAKPKRTRKKKVEAAPAPEAEAEAAPAAPEAAEPAAAEPVAEEAPAKPKRTRKKKVEAA 849 Query: 733 QSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNA 786 + EA E AA A R KV E Sbjct: 850 PAPEAEAETEAEAAEPAAAAAEEAPAKPKRVRKKKVEAVASDAAPAETVTAEAP 903 Score = 94.6 bits (233), Expect = 2e-17, Method: Composition-based stats. Identities = 43/83 (51%), Positives = 55/83 (66%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 RMLI+A QEE RVA++ G R+ + D ES H+Q K NIY K+TR+EPSL+AAFVD+G Sbjct: 4 RMLIDARHQEETRVAVLKGNRIEEFDFESADHKQIKGNIYLAKVTRVEPSLQAAFVDFGG 63 Query: 63 ERHGFLPLKEIAREYFPANYSAH 85 RHGFL EI +Y+ Sbjct: 64 NRHGFLAFSEIHPDYYQIPKEDR 86 >UniRef50_A4AGL0 Ribonuclease G n=3 Tax=Actinobacteria (class) RepID=A4AGL0_9ACTN Length = 944 Score = 454 bits (1168), Expect = e-126, Method: Composition-based stats. Identities = 163/662 (24%), Positives = 296/662 (44%), Gaps = 6/662 (0%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R+++ ++ + +++A+++ L + + N+Y G++ + PS+EAAFVD Sbjct: 285 VDRVMVVRSKFDRIQIAVLEDGVLVEHYVAKAQDASLIGNVYLGRVQNVLPSMEAAFVDI 344 Query: 61 GAERHGFLPLKEIAREYFPANYSAHG--RPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 G R+ L E+ + N + I+ L+ G V+VQ+ K+ G+KGA LT+ Sbjct: 345 GRGRNAVLYSGEVDWDAAAENSADGKPQARRIELALKPGDRVLVQVTKDPVGHKGARLTS 404 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAE 178 +SL G YLV +PN + GISR++ +R+ LK+ L + LPE +G+IVRTA G + E Sbjct: 405 QVSLPGRYLVYVPNGSMS-GISRKLPDTERSRLKKILKGV-LPENVGVIVRTAAEGATEE 462 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 L D+S W I + AP L+H E +++++ RD +D +++I+ + Sbjct: 463 QLTLDVSRLTNQWADISAQVDKVQAPALLHSEPDLLIKIIRDVFNEDFHKLVIEGDDARK 522 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 ++ ++ PD +++ + + F +++ QIE A R+V LPSGGS+VID TEA Sbjct: 523 TIENYVRSVA-PDLLDRLQPHESTVDSFEEFRVSEQIEKALDRKVWLPSGGSLVIDRTEA 581 Query: 299 LTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 +T +D+N+ + GG++EET N+EAA+EI RQLRLRD+GG+IV+DFIDM ++ Sbjct: 582 MTVVDVNTGKFVGSGGNLEETVTKNNVEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRD 641 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V RL E + +DR + Q++ ++ GL++M+R++L L E+ C C+G G V ++ Sbjct: 642 LVLRRLVECLSRDRTKHQVAEVTSLGLVQMTRKKLGLGLLETFSENCEVCAGRGVVVHHD 701 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 ++ + + E + + + ++ ++ Sbjct: 702 PVTKHRQQPTQNEQAGSGRRGRNRGGNGNGSGNGSGNGGNSGGGNSGSGANGGSQNQQSN 761 Query: 478 QMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 G T ++ + A PA Sbjct: 762 SPSKSSNGASSNGAGNGTHAITEDVRNALARVAASTVLSATEHPAEERVPAAEAPETTQK 821 Query: 538 PPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPK 597 ++ AP AAP ++ ++ A + + + + A Sbjct: 822 SGKSAKSDAPQKSDAPQKTAAPQKSSSGSKSNTAKAEKKANTSATQTADVVEGAAETAVA 881 Query: 598 AEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESR 657 P + + P+ + + E R R+A Q + Sbjct: 882 IFDIPISKTSQAAPKISTQDAEQILGSVLEALPEPKQPGHGKARGSRRASSQGKTVTAAP 941 Query: 658 QQ 659 + Sbjct: 942 SE 943 >UniRef50_Q97JL8 Ribonucleases G/E family protein n=1 Tax=Clostridium acetobutylicum RepID=Q97JL8_CLOAB Length = 481 Score = 453 bits (1166), Expect = e-125, Method: Composition-based stats. Identities = 121/499 (24%), Positives = 233/499 (46%), Gaps = 26/499 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK++ I + L+VA++D + IE E IYKG + I P+++ AFVD Sbjct: 1 MKKIFIERCT-DFLKVAVLDNGEFKECFIEDEKEEIYSGAIYKGVVKNIVPAIKCAFVDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++G+L + +++G E++V+I KE G+KG ++ I Sbjct: 60 GNGKNGYLYMDSKFNNVN---------------IKKGDEMLVEIVKESIGSKGPKVSNAI 104 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 ++ G Y V++ N IS++I +K +++ PE +G+++RT S E + Sbjct: 105 TIPGRYSVIITLNTDIN-ISKKISDS--KYIKMLKENVKKPEDVGVMIRTNAQNVSLEDI 161 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGE--ILIDNPKVLE 238 ++ + + I+K A+ +++ I R RD +D+ + +++++ K + Sbjct: 162 NNEIENLYETYVGIRKKAKYSNKVGIVYNAGGTIERIMRD--NEDVADLTVVVNDKKDFD 219 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 + +I L + D +KL+ I L +Y E +I R+V L GG ++ID+TEA Sbjct: 220 NIQNYI--LTKKDMKCNLKLHDSNISLMEYYGFEREIVKLIDRKVMLKCGGYLIIDNTEA 277 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 + ID+NS + + ++ TAF TN+EAA E ARQ+ LR+L G+IVIDFID+T + Sbjct: 278 MHVIDVNSGKNIKNSNLARTAFLTNMEAAKEAARQIILRNLSGIIVIDFIDITDEEAKSK 337 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 + N L++ +D+ + + + +++++R+R S+ + C C G+G + E Sbjct: 338 IVNVLKQGFLKDKNKTIVYPFTELNIVQIARRRRGKSIYDYLEEKCDSCIGSGRKLNFEY 397 Query: 419 LSLSILRL-IEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 + + I E + ++ + + + + + I V Sbjct: 398 MKNLMRNKVIRFLEEHEKAKSIYIEMDKRYENKISLDVEGFIKDIGADNLSVYIEYKSKP 457 Query: 478 QMETPHYHVLRVRKGEETP 496 + ++ L + Sbjct: 458 DVFKINFRELSSDMEKMQQ 476 >UniRef50_C6QC83 Ribonuclease, Rne/Rng family n=1 Tax=Hyphomicrobium denitrificans ATCC 51888 RepID=C6QC83_9RHIZ Length = 1025 Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats. Identities = 223/729 (30%), Positives = 335/729 (45%), Gaps = 15/729 (2%) Query: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 E I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMP Sbjct: 278 EFREGPRSRQRRRPRSYKIQEVIKRRQIILVQVVKEERGNKGAALTTYLSLAGRYTVLMP 337 Query: 132 NNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKH 190 N R GGISR+I DR LK LE+PEGMGLI+RTAG ++ + ++ D + L+ Sbjct: 338 NTARGGGISRKITNPQDRRRLKSIAQELEVPEGMGLIIRTAGAARTKQEIKRDFEYLLRL 397 Query: 191 WEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRP 250 WE+++ AP L+++E ++I R+ RD +D+ EI++ + A + L P Sbjct: 398 WESVRDLTLQSTAPSLVYEEGDLIKRSIRDLYNKDVEEIVVAGDAGHQEAADFMKML-MP 456 Query: 251 DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARAT 310 + + Y PLF+ Y +E Q+ + FQ +V L SGG IVI+ TEAL AID+NS ++T Sbjct: 457 SHAKNVVAYREPTPLFTRYGVERQLNAMFQPQVTLRSGGYIVINQTEALVAIDVNSGKST 516 Query: 311 RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQD 370 R IEETA TNLEAADEIARQL+LRDL GLIVIDFIDM R+ RAVE RL++A+R D Sbjct: 517 REFSIEETALATNLEAADEIARQLKLRDLAGLIVIDFIDMEEKRNNRAVERRLKDALRFD 576 Query: 371 RARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE 430 RARIQ+ IS FGL+EMSRQRL + E S C C GTG +R ES++L++LR IE+ Sbjct: 577 RARIQLGRISHFGLMEMSRQRLRTGVLEGSTSQCAHCQGTGIIRSTESIALAVLRGIEDA 636 Query: 431 ALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVR 490 + A +A Y+LN KR+ V +E R G ++ +D+++ ++ V Sbjct: 637 ITAGANGPLVATTTSAVALYILNSKRAYVADMEVRH-GYSVTVLGSDRVQGANFTV---- 691 Query: 491 KGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPV 550 + + LP E A+ + + + P+ A M A E Sbjct: 692 ----ERSAASALPIRRTERAAVNMD--WGFDAEGDAPSYAPSDMDSANEAGDADEDVID- 744 Query: 551 VAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRK 610 + + R + E EQ +E D Sbjct: 745 RETRNGSRDGEENGQRRSRRRRRRGRGGRDRGDDRGEEYSLEQREDDSERDQPATDDAHS 804 Query: 611 PRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTAD 670 D D S + + + ++ R ++ + +D Sbjct: 805 DFDEPTADIEGLGDQPSVDDGAHAEASNGQGSDEKPNKRRRRGRRGGRRGRERGRDAASD 864 Query: 671 EQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVR 730 + + + E+ ET +R + R+ R++ Sbjct: 865 ATASDTDQPDLDDEGSDEAVEVVEVVEAAEQNEPAETGAPDRAKAPSSGRRPRRVWDVPS 924 Query: 731 YEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRD 790 + A V+++ P+V AP P + + + V ++ + Sbjct: 925 AANGADDAAPEPAEVDQSPEPAPVVL-APEPAPQPIAAEVEVASEPVAAPAAPARRRHEI 983 Query: 791 NGGMPRRSR 799 PR R Sbjct: 984 GSSEPRIER 992 Score = 85.7 bits (210), Expect = 9e-15, Method: Composition-based stats. Identities = 37/84 (44%), Positives = 51/84 (60%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 +MLI+AT EE RV + R+ + D ES + + NIY K+TR+EPSL+AAFVDYG Sbjct: 5 KMLIDATHPEETRVVVQRNGRVEEFDFESAARKLLRGNIYLAKVTRVEPSLQAAFVDYGG 64 Query: 63 ERHGFLPLKEIAREYFPANYSAHG 86 RHGFL E+ +Y+ + Sbjct: 65 NRHGFLAFNEVHPDYYQIPVADRQ 88 >UniRef50_C5VAX0 Ribonuclease E n=5 Tax=Corynebacterium RepID=C5VAX0_9CORY Length = 929 Score = 453 bits (1164), Expect = e-125, Method: Composition-based stats. Identities = 162/622 (26%), Positives = 266/622 (42%), Gaps = 24/622 (3%) Query: 14 LRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEI 73 +V +++ L + + S NIY G++ + P++EAAF+D G R+G L E+ Sbjct: 306 TQVGVLEDDMLVEHFVTSDTQSSLAGNIYLGRVQNVLPAMEAAFIDIGKGRNGVLYAGEV 365 Query: 74 AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 I+ L+ G +V+VQ+ K+ G KG LTT ISLAG YLV +P Sbjct: 366 DWRAANL---GGRHRKIEQALKSGDQVLVQVAKDPIGQKGPRLTTQISLAGRYLVYVPGG 422 Query: 134 PRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEA 193 ++ GISR++ +R LK L ++ +P +I+RTA G +A+ D++ WE Sbjct: 423 -KSAGISRKLPAPERKRLKAILKNV-VPADGSVIIRTAAEGVPEDAIAADVNRLHSLWEQ 480 Query: 194 IKKAAESRP-----APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALG 248 I++ P +++E N++V+ RD +D +++D + +I ++ Sbjct: 481 IQERTLKEKESKGTKPVTMYEEPNMLVKVVRDLFNEDFTSLVVDGNRAWNTVHAYIQSVA 540 Query: 249 RPDFSSKIKLYT----GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDI 304 PD +++ + F +++ Q++ A R+V LPSGG++VID TEA+T ID+ Sbjct: 541 -PDLLDRLEKFDREAHDGQDAFEALRVDEQLKKALSRKVWLPSGGTLVIDRTEAMTVIDV 599 Query: 305 NSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL 363 N+ + T GG++EET NLEAA+EI RQ+RLRDLGG+IV+DFIDM +Q V RL Sbjct: 600 NTGKFTGSGGNLEETVTKNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRL 659 Query: 364 REAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSI 423 EA+ +DR R QIS ++ GL++++R+RL L E+ C CSG G + ++ + Sbjct: 660 TEALGRDRTRHQISEVTSLGLVQITRKRLGTGLLETFATECEECSGRGVLIHDDPVEHHT 719 Query: 424 LRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPH 483 + E K + + ++ Sbjct: 720 ISDRPERRGKHGVPHQDPTRHPAVLAMEHQDESDE--------PEPTDDFAEEPLFRPSE 771 Query: 484 YHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTP 543 + + P+ LP +EEA++ RK PTP Sbjct: 772 TSIEGLAAAVVAPSAEDYLPATYEEAVSAYEASPRRNRKVRGNSLSDVPPQKSDFEPPTP 831 Query: 544 AEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPE 603 P + + K + K Sbjct: 832 EPEPEPEPESGSRRRRRAVHKKVTESEAAPAVDVDKLEETTHRTRKRRRVVRKTGSTATR 891 Query: 604 RQQDRRKPRQNNRRDRNERRDT 625 R + R + T Sbjct: 892 RGATTQSRRSAASGKTSTDSAT 913 >UniRef50_A6CTK6 Cytosolic axial filament protein n=1 Tax=Bacillus sp. SG-1 RepID=A6CTK6_9BACI Length = 494 Score = 452 bits (1163), Expect = e-125, Method: Composition-based stats. Identities = 139/481 (28%), Positives = 248/481 (51%), Gaps = 6/481 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M R+++NA +E+ R A + + + P E NIY G++ ++E L AAF++ Sbjct: 10 MNRIIVNALGREK-RWARLRDGIMESFHVYQPEKESIAGNIYIGRVDKVEKGLNAAFINI 68 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++GFL ++++A EY + I +L +GQ++IVQ+ K+ G KG +T I Sbjct: 69 GEGKNGFLHIEDLA-EYMLLDEKERKTAEINRLLHQGQKLIVQVKKDPAGTKGPRVTGII 127 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 + G+ LV +P+ R +S++ +++ + S E G++ RTA +GK+ + + Sbjct: 128 EMKGTSLVYLPHG-RYTAVSKKASSEEQKKKWRRFGSRIKEEEEGIVFRTAALGKAEKEI 186 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q + K ++ + ++ S+ APFL+H++ + + + EI+ D+ Sbjct: 187 QNEYLGLKKQYQELYSSSLSKKAPFLLHRQDVMKEDILEEIKKVKQAEIITDDYSWKNEF 246 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++ + + +I + +F HY++E+QIE A ++ V L +G +IVI+ TEALT Sbjct: 247 QEFLHN-NKASLGGEITHFQSHENIFVHYRVETQIEKAMKKVVWLDNGATIVIEPTEALT 305 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ID+N+ + T D+ +T TN AA EIARQL++R+L G+I+IDFI+M +HQ V Sbjct: 306 VIDVNTGKFTGKSDLSQTVLKTNELAAKEIARQLKIRNLSGIILIDFIEMKSEQHQTEVV 365 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 N L+E +++D R I + G+L+++R++ P L E CP CSG G V ES++ Sbjct: 366 NALKEGLKEDGKRTTIVGFTELGILQLTRKKTKPPLLEYISCRCPICSGYGMVESAESMA 425 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 + R + E + +V + E + +E + + P Q Sbjct: 426 YKLEREL-YELYPADEDKVIIEATEDVQKVFKGESSQYLKEMEKSINK-KIEFQPVSQSH 483 Query: 481 T 481 Sbjct: 484 P 484 >UniRef50_C0VZF1 Ribonuclease E n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0VZF1_9ACTO Length = 819 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 172/647 (26%), Positives = 279/647 (43%), Gaps = 10/647 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 +KR +I Q ++A+++ L + + + NIY G++ + PS+EAAFVD Sbjct: 181 VKREMIVREQNGLNQIAVLEDGLLVEHYVARRTQQTMVGNIYLGRVQNVLPSMEAAFVDL 240 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ E I+ L+ G V+VQ+ K+ G+KGA LT+ I Sbjct: 241 GKGRNAVLYAGEVNWEAVGLAGRPR---RIEQALKSGDTVLVQVTKDPIGHKGARLTSQI 297 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LAG YLVL+P GISR++ +RT LK+ L+ + +P+ G+IVRTA G + E L Sbjct: 298 TLAGRYLVLVPAGQMT-GISRKLPERERTRLKKLLSKI-VPKDYGVIVRTAAEGATEEQL 355 Query: 181 QWDLSFRLKHWEAIKKAAES-RPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + D++ WE I+K + + P L+ E + VR RD +D + + + + Sbjct: 356 RDDVTRLQAQWEEIEKKQKKTQKVPVLLRSEPELAVRVVRDVFTEDFQSLTVQGEETWQT 415 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 ++++ L PD +++ + + +F+ ++I+ Q+ R+V LPSGGS+VID TEA+ Sbjct: 416 VQEYVDELA-PDLRDRLRRWVNKEDVFTVHRIDEQLTKGMDRKVWLPSGGSLVIDRTEAM 474 Query: 300 TAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 T ID+N+ + GG +EET NLEAA+EI RQLRLRD+GG++VIDF+DM ++ Sbjct: 475 TVIDVNTGKFIGSGGTLEETVTKNNLEAAEEIVRQLRLRDIGGIVVIDFVDMVLESNRDL 534 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 V RL E + +DR R Q++ I+ GL++M+R+R+ L E+ C C G G + Sbjct: 535 VLRRLVECLGRDRTRHQVTEITSLGLVQMTRKRVGEGLVEAFSTPCECCDGRGFIVHQNP 594 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 + K Q V P A E RSA++AI ND Sbjct: 595 V--ERDHTGHAIMPKTLRQVQPETVVDPEAEAKHEEVRSALSAIAAAAASAHASEEKNDN 652 Query: 479 METPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVP 538 + K E + + E + ++ D Sbjct: 653 HSEGDKADVSTDKVELPQKRTKNERGRRGLKDRRNKQARNQMLDDAEALLDSIGSVLDAK 712 Query: 539 PAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKA 598 E A P + G P+ Sbjct: 713 AERKSGEAEVGAGESTVVAEPVVSGKETVFTAETSVGAQRAPKHRGARRAVSVAAGQPQV 772 Query: 599 EAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQ 645 ++P R + + +++ Sbjct: 773 VSEPVVVAPVVIARPVAEVTTADLPERPVKKSRRVAVANPVVSAENN 819 >UniRef50_A8IFL2 Ribonuclease E and G n=6 Tax=Rhizobiales RepID=A8IFL2_AZOC5 Length = 1093 Score = 451 bits (1160), Expect = e-125, Method: Composition-based stats. Identities = 222/725 (30%), Positives = 340/725 (46%), Gaps = 10/725 (1%) Query: 78 FPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAG 137 A I++V+R Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R G Sbjct: 368 ERAPQRRARTYKIQEVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTARGG 427 Query: 138 GISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKK 196 GISR+I DR LKE + LE+PEGMG+I+RTAG ++ ++ D + L+ WE +++ Sbjct: 428 GISRKITNAVDRKRLKEVVQELEVPEGMGIILRTAGANRTKVEIKRDFEYLLRLWETVRE 487 Query: 197 AAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKI 256 + AP L+++E ++I RA RD ++I EI + + + AR + L P + + Sbjct: 488 LTLTSSAPNLVYEEGSLIKRAIRDLYSKEIDEIHVAGEEGFQEARDFMRML-MPSHAKNV 546 Query: 257 KLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIE 316 Y P+F+ Y +E Q+++ F V+L SGG IVI+ TEAL +ID+NS RATR IE Sbjct: 547 IAYREPQPIFAKYGVEHQLDAMFSPVVQLKSGGYIVINPTEALVSIDVNSGRATREHHIE 606 Query: 317 ETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQI 376 +TA TN+EAA+EIARQLRLRDL GLIVIDFIDM R+ R+VE +L++ ++ DRARIQ+ Sbjct: 607 DTALKTNMEAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRSVERKLKDCLKNDRARIQV 666 Query: 377 SHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENT 436 IS FGL+EMSRQR+ + ESS VCP C GTG VR S++L +LR +EE+ L+ + Sbjct: 667 GRISHFGLMEMSRQRIRTGVLESSIEVCPVCGGTGHVRSAASVALQLLRALEEQLLRSAS 726 Query: 437 QEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETP 496 + A +A Y+LN KR+ + +E R V + + + Sbjct: 727 HNLIARTRGEVALYVLNHKRAHLRELEDRFSVTLIVQADESVTGHQPFLIEKGEIAAPPA 786 Query: 497 TLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPK 556 + +H +++ + + E+ + + A + K Sbjct: 787 PAPRLSSAVHPDSIL-----PDEDYEDDEEELEESAEAEAEDESEGEAVASERGDDQPRK 841 Query: 557 AAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNR 616 + + + G++ + EA+ E + R Sbjct: 842 RRRRRRRRGGERESRADDANGSDEDGAEGDDETESASGEGDDEARAEGEDRSEADSAERR 901 Query: 617 RDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPR 676 R R RR R R EG + +A ++AE + +A + Q+ Sbjct: 902 RRRRGRRGGRRNRREGEAGSGDETSADAEADGESAEGEGLESDGQEPARALSFPGQETFA 961 Query: 677 RERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVA 736 + +A + + + E + P + R +V Sbjct: 962 EIEATSSESPSHEASSNEPPVTADPPLPEPVVVPEVLAPAPAAEPEAPAAPAPRRRSTVR 1021 Query: 737 EEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPR 796 E+ APV +A AP TE P+ ++ E + P Sbjct: 1022 EK---APVSGAASSAPTEAAPAPQAPTEPASEPVEAAPESPVEPAVAQAEEAPAAPAAPP 1078 Query: 797 RSRRS 801 R+ Sbjct: 1079 AKPRT 1083 Score = 70.7 bits (171), Expect = 3e-10, Method: Composition-based stats. Identities = 39/86 (45%), Positives = 54/86 (62%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+AT EE RV +V G R+ + D ES +Q + NIY K+TR+EPSL+AAF++YG Sbjct: 3 NKMLIDATHPEETRVVVVRGNRVEEFDYESASRKQLRGNIYLAKVTRVEPSLQAAFIEYG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGR 87 RHGFL EI +Y+ + Sbjct: 63 GNRHGFLAFSEIHPDYYQIPVADRQA 88 >UniRef50_B5ZYQ5 Ribonuclease, Rne/Rng family n=7 Tax=Alphaproteobacteria RepID=B5ZYQ5_RHILW Length = 965 Score = 451 bits (1159), Expect = e-125, Method: Composition-based stats. Identities = 218/703 (31%), Positives = 327/703 (46%), Gaps = 4/703 (0%) Query: 79 PANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGG 138 + I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GG Sbjct: 256 RVQRKPRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGG 315 Query: 139 ISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKA 197 ISR+I DR LKE LE+P+GMG+I+RTAG ++ ++ D + ++ WE ++ Sbjct: 316 ISRKITNPADRKRLKEIARMLEVPQGMGVILRTAGANRTKVEVKRDFEYLMRLWENVRTL 375 Query: 198 AESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIK 257 + AP L+++E ++I R+ RD +DIGEI++ + A+ + L P + ++ Sbjct: 376 TLASTAPCLVYEEGSLIKRSIRDLYNKDIGEIIVAGEEGYREAKDFMKML-MPSHAKVVQ 434 Query: 258 LYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEE 317 Y P+FS IE+Q++ Q +V L SGG ++++ TEAL +ID+NS R+TR IE+ Sbjct: 435 PYRDIHPIFSRSGIEAQLDRMLQPQVTLRSGGYLIMNQTEALVSIDVNSGRSTREHSIED 494 Query: 318 TAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQIS 377 TA TNLEAA+EIARQLRLRDL GLIVIDFIDM R+ RAVE +L+E ++ DRARIQ+ Sbjct: 495 TALQTNLEAAEEIARQLRLRDLAGLIVIDFIDMEEKRNNRAVEKKLKECLKNDRARIQVG 554 Query: 378 HISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQ 437 IS FGLLEMSRQR+ S+ ES+ VC C G+G VR S++L +LR IEE LK T Sbjct: 555 RISHFGLLEMSRQRIRASVLESTTQVCSHCGGSGHVRSQSSVALHVLRGIEEYLLKNTTH 614 Query: 438 EVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPT 497 + IA YLLN KR + E R GV VI + + H+ + R E Sbjct: 615 NISVRTTPDIALYLLNHKRQTIIDYENRF-GVAIVIDADGSVGAQHFAIDRGEAVENPVK 673 Query: 498 LSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKA 557 + + + E+ A A + E + Sbjct: 674 IETLFNFAAIPEDDDDDIVIEIDEDEDEELEEKPAATERPVAARSEGEGDGNRKRKRRRR 733 Query: 558 APATPAAPAQPGL-LSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNR 616 QP + E T + A + A+ E Q R++ R+ R Sbjct: 734 RRGRNGNAEQPASAAGEAGDEDEDGDDESGEGDETTEGATETLAESEESQRRKRRRRGKR 793 Query: 617 RDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPR 676 R R + SE T G + + + + + + T +A ++ Sbjct: 794 GGRRNRAEDGSELTVGEAGEDNGGDDGGEEGEADDVSNDGAPGEAETVEAVAEQAGESQA 853 Query: 677 RERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVA 736 + + + A+ + + E+ + + E Sbjct: 854 AAAAVEGAAIVAEDVKPARGRGRRKAAAAPVEEPVAEAAPVAEAEPELVEASADLETPAQ 913 Query: 737 EEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPE 779 EEA I P ++ + + Sbjct: 914 EEAPEEAKPVRANRESNITSSEPTVKSTRSENGESDDGKPKKA 956 Score = 87.7 bits (215), Expect = 2e-15, Method: Composition-based stats. Identities = 40/86 (46%), Positives = 55/86 (63%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+A+ +EE RV +V G R+ + D ES +Q + NIY K+TR+EPSL+AAFVDYG Sbjct: 3 DKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVDYG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGR 87 RHGFL EI +Y+ + Sbjct: 63 GNRHGFLAFAEIHPDYYQIPLADRQA 88 >UniRef50_B9JVK9 Ribonuclease E n=40 Tax=Rhizobiales RepID=B9JVK9_AGRVS Length = 1035 Score = 450 bits (1158), Expect = e-124, Method: Composition-based stats. Identities = 232/741 (31%), Positives = 350/741 (47%), Gaps = 9/741 (1%) Query: 84 AHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI 143 + I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I Sbjct: 289 PRKQYRIQEVIKRRQILLVQVAKEERGNKGAALTTYLSLAGRYSVLMPNTARGGGISRKI 348 Query: 144 EG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRP 202 DR LKE LE+P GMG+I+RTAG ++ ++ D + ++ WE ++ + Sbjct: 349 TNPADRKRLKEVARDLEVPLGMGVILRTAGANRTKVEVKRDFEYLMRLWENVRTLTLNST 408 Query: 203 APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGE 262 AP L+++E ++I R+ RD +DI EI++ + A+ + L P + ++ Y Sbjct: 409 APCLVYEEGSLIKRSIRDLYNKDISEIVVSGEEGYREAKDFMKML-MPSHAKVVQPYRDI 467 Query: 263 IPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNT 322 P+FS IE+Q++ Q +V L SGG I+I+ TEAL +ID+NS R+TR IE+TA T Sbjct: 468 HPIFSRSGIEAQLDRMLQPQVTLKSGGYIIINQTEALVSIDVNSGRSTREYSIEDTALQT 527 Query: 323 NLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRF 382 NLEAA+E+ARQLRLRDL GLIVIDFIDM R+ R+VE +L++ ++ DRARIQ+ IS F Sbjct: 528 NLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRSVEKKLKDCLKNDRARIQVGRISHF 587 Query: 383 GLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAI 442 GLLEMSRQR+ S+ ES+ VC CSGTG +R S++L +LR +EE LK T ++ Sbjct: 588 GLLEMSRQRIRASVLESTTQVCQHCSGTGLIRSQSSVALHVLRGVEEYLLKSTTHDITVR 647 Query: 443 VPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYML 502 A YLLN KR ++ E R GV +I + + H+ + + + +L Sbjct: 648 TLPETALYLLNHKRGSIVDYENRF-GVSIIIDSDASVGHQHFAIDKGEPVANPVRIETLL 706 Query: 503 PKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATP 562 P + E P E E A A A + Sbjct: 707 PLISEPEEDDPIIEIEEEDDEDVVEAPVQAQPASSGNAAANAAEDGNRKRKRRRRRRGKN 766 Query: 563 AAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNER 622 G G ++++ + AE + + + N + Sbjct: 767 GNGHADG-----QQNAAGGDEGDDDSEGEDDAEDTAEDRDDSVEASDASEDGNSESQRRN 821 Query: 623 RDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRR 682 + R + G R+EN + TAE +S +++ + + + P + Sbjct: 822 KRRRRGKRGGRRGRDENGVSADAEGNDTAEDDDSAEESVQADADQAVAVAEVPSDAVADS 881 Query: 683 RNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVA 742 + +A+ +E + + + + + V A Sbjct: 882 VVVAAEVSVPATEAVKADEPVAAKPRRARKPKASAKTEAADSVETVTEPAAVPEAVVVEA 941 Query: 743 PVVEETVAAEPIVQEAPAPR-TELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRS 801 P E VAA P+ +E P + V P P V APE E A + + P R+ RS Sbjct: 942 PAAAEPVAASPVSEETSVPAPAQDVSAPEPAVEAPAPEVASEPEAVSDASAEKPVRANRS 1001 Query: 802 PRHLRVSGQRRRRYRDERYPT 822 E P Sbjct: 1002 SNVSTSEPVVTSVTNGEEAPK 1022 Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 40/86 (46%), Positives = 55/86 (63%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+A+ +EE RV +V G R+ + D ES +Q + NIY K+TR+EPSL+AAFVDYG Sbjct: 3 DKMLIDASHEEETRVVVVRGNRIEEFDFESQHKKQIRGNIYLAKVTRVEPSLQAAFVDYG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGR 87 RHGFL EI +Y+ + Sbjct: 63 GNRHGFLAFAEIHPDYYQIPLADRQA 88 Score = 49.9 bits (117), Expect = 5e-04, Method: Composition-based stats. Identities = 48/333 (14%), Positives = 90/333 (27%) Query: 727 QKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNA 786 K + + P++ E +PI++ ++V+ P+ ++ Sbjct: 691 DKGEPVANPVRIETLLPLISEPEEDDPIIEIEEEDDEDVVEAPVQAQPASSGNAAANAAE 750 Query: 787 DNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRY 846 D RR R + GQ+ DE A S + Sbjct: 751 DGNRKRKRRRRRRGKNGNGHADGQQNAAGGDEGDDDSEGEDDAEDTAEDRDDSVEASDAS 810 Query: 847 PIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQ 906 + + ++R + + + E V+A E +A + V+A A Sbjct: 811 EDGNSESQRRNKRRRRGKRGGRRGRDENGVSADAEGNDTAEDDDSAEESVQADADQAVAV 870 Query: 907 PEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEV 966 EV + + A + + +T + V E Sbjct: 871 AEVPSDAVADSVVVAAEVSVPATEAVKADEPVAAKPRRARKPKASAKTEAADSVETVTEP 930 Query: 967 VVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHS 1026 VV + A A+ V +V A AP PEA + Sbjct: 931 AAVPEAVVVEAPAAAEPVAASPVSEETSVPAPAQDVSAPEPAVEAPAPEVASEPEAVSDA 990 Query: 1027 DWQRPTFAFEGKGAAGGHTATHHASAAPARPQP 1059 ++P A + + P+P Sbjct: 991 SAEKPVRANRSSNVSTSEPVVTSVTNGEEAPKP 1023 Score = 48.4 bits (113), Expect = 0.001, Method: Composition-based stats. Identities = 31/293 (10%), Positives = 62/293 (21%) Query: 653 TRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEER 712 Q A A A E +R+R RRR + + + + E Sbjct: 732 APVQAQPASSGNAAANAAEDGNRKRKRRRRRRGKNGNGHADGQQNAAGGDEGDDDSEGED 791 Query: 713 VRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPV 772 + + E +E ++ + Sbjct: 792 DAEDTAEDRDDSVEASDASEDGNSESQRRNKRRRRGKRGGRRGRDENGVSADAEGNDTAE 851 Query: 773 VAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVAC 832 +A E + + +P + + + + P Sbjct: 852 DDDSAEESVQADADQAVAVAEVPSDAVADSVVVAAEVSVPATEAVKADEPVAAKPRRARK 911 Query: 833 ASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEV 892 + + P V E + V ++ E Sbjct: 912 PKASAKTEAADSVETVTEPAAVPEAVVVEAPAAAEPVAASPVSEETSVPAPAQDVSAPEP 971 Query: 893 AGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAE 945 A AP +EP+ + V A + E A + + Sbjct: 972 AVEAPAPEVASEPEAVSDASAEKPVRANRSSNVSTSEPVVTSVTNGEEAPKPK 1024 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 30/293 (10%), Positives = 61/293 (20%) Query: 643 RRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQ 702 Q + + AE + R ++ + E + E Sbjct: 732 APVQAQPASSGNAAANAAEDGNRKRKRRRRRRGKNGNGHADGQQNAAGGDEGDDDSEGED 791 Query: 703 SVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPR 762 ++T ++ + ++ R + + + Sbjct: 792 DAEDTAEDRDDSVEASDASEDGNSESQRRNKRRRRGKRGGRRGRDENGVSADAEGNDTAE 851 Query: 763 TELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPT 822 + E +D + + P V + R Sbjct: 852 DDDSAEESVQADADQAVAVAEVPSDAVADSVVVAAEVSVPATEAVKADEPVAAKPRRARK 911 Query: 823 QSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEP 882 T A S E + + +V E + +A EP Sbjct: 912 PKASAKTEAADSVETVTEPAAVPEAVVVEAPAAAEPVAASPVSEETSVPAPAQDVSAPEP 971 Query: 883 VVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVA 935 V AP E + AE +++ VT Sbjct: 972 AVEAPAPEVASEPEAVSDASAEKPVRANRSSNVSTSEPVVTSVTNGEEAPKPK 1024 Score = 44.1 bits (102), Expect = 0.030, Method: Composition-based stats. Identities = 32/339 (9%), Positives = 67/339 (19%), Gaps = 4/339 (1%) Query: 632 GSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQ 691 N +E E E+ E+ + + + + N A+ Sbjct: 691 DKGEPVANPVRIETLLPLISEPEEDDPIIEIEEEDDEDVVEAPVQAQPASSGNAAANAAE 750 Query: 692 QEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAA 751 + + + + + + VE + A+ Sbjct: 751 DGNRKRKRRRRRRGKNGNGHADGQQNAAGGDEGDDDSEGEDDAEDTAEDRDDSVEASDAS 810 Query: 752 EPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQR 811 E E+ + + N + Sbjct: 811 EDGNSESQRRNKRRRRGKRGGRRGRDENGVSADAEGNDTAEDDDSAEESVQADADQAVAV 870 Query: 812 RRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMV 871 D + A+ + + + P + + + V Sbjct: 871 AEVPSDAVADSVVVAAEVSVPATEAVKADEPVAAKPRRARKPKASAKTEAADSVETVTEP 930 Query: 872 TEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITE 931 VP A +E +A V E V P P + + A E Sbjct: 931 AAVPEAVVVEAPAAAEPVAASPVSEETSV----PAPAQDVSAPEPAVEAPAPEVASEPEA 986 Query: 932 SDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAE 970 A A++ E + Sbjct: 987 VSDASAEKPVRANRSSNVSTSEPVVTSVTNGEEAPKPKK 1025 Score = 43.0 bits (99), Expect = 0.062, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 58/230 (25%), Gaps = 1/230 (0%) Query: 790 DNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIV 849 S + + +RR + R + A G Sbjct: 796 TAEDRDDSVEASDASEDGNSESQRRNKRRRRGKRGGRRGRDENGVSADAEGNDTAEDDDS 855 Query: 850 RPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEV 909 + VQ + + V V A E V A + V A + A Sbjct: 856 AEESVQADADQAVAVAEVPSDAVADSVVVAAEVSVPATEAVKADEPVAAKPRRARKPKAS 915 Query: 910 VETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVA 969 +T + + A A A PV E A ++V E V Sbjct: 916 AKTEAADSVETVTEPAAVPEAVVVEAPAAAEPVAASPVSEETSVPAPAQDVS-APEPAVE 974 Query: 970 EPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYV 1019 P V++ +AE A V+ T+ AP+ Sbjct: 975 APAPEVASEPEAVSDASAEKPVRANRSSNVSTSEPVVTSVTNGEEAPKPK 1024 >UniRef50_B4RCR6 Ribonuclease, Rne/Rng family protein n=4 Tax=Alphaproteobacteria RepID=B4RCR6_PHEZH Length = 896 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 217/761 (28%), Positives = 326/761 (42%), Gaps = 16/761 (2%) Query: 88 PNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIE-GD 146 I++V+R Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN R GGISR+I Sbjct: 143 YKIQEVIRRRQIMLVQVVKEERGNKGAALTTYLSLAGRYGVLMPNTARGGGISRKITTAT 202 Query: 147 DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFL 206 DR LK + SL++P GMGLIVRTAG ++ ++ D + L+ WE I++ AP L Sbjct: 203 DRKRLKSIVQSLDVPAGMGLIVRTAGAKRTKAEIKRDYDYLLRLWENIRETTLHSIAPAL 262 Query: 207 IHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLF 266 I++E +++ RA RD +D+ + ++ + AR + L P + K++LY PL+ Sbjct: 263 IYEEEDLVKRAIRDLYDKDVDNVWVEGEAGFKEARDFMRML-MPSQAKKVQLYREPTPLY 321 Query: 267 SHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEA 326 +++E + + V L SGG +VI+ TEAL AID+NS RATR +IE TA TN+EA Sbjct: 322 VKHKVEDHLSQIYSPVVPLRSGGYLVINQTEALVAIDVNSGRATRERNIEATALKTNMEA 381 Query: 327 ADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLE 386 A+E ARQLRLRDL GLIVIDFIDM ++ RAVE +L++ ++ DRAR+Q+ IS FGL+E Sbjct: 382 AEEAARQLRLRDLAGLIVIDFIDMDEAKNNRAVEKKLKDCLKDDRARVQMGKISPFGLME 441 Query: 387 MSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVP 446 +SRQR + E + HVC C GTG VR ES +L+ LR +E EALK + VP Sbjct: 442 ISRQRRRTGVLEGTTHVCEHCGGTGRVRSVESSALAALRALEIEALKGGGEA-TLTVPRA 500 Query: 447 IASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLH 506 + Y+LNEKR + + G+ ++ +D M + + + Sbjct: 501 VGLYILNEKRGHLARLHHAF-GLFVTVLIDDDMAHAEHGI------------ERTASETR 547 Query: 507 EEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPA 566 E A + E+ L + +A Sbjct: 548 AEHAAALAPTAAGAVPPAEEAYLEEVFEDEDEAEEEEESFEEDEDEGGAEAEAPRSREAR 607 Query: 567 QPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTR 626 + G +P + A ++ R + R+ + R Sbjct: 608 GDREDGEGRRGRRRRRRGRRGDEPAGERPEGARSEGGRPEGGRREEVQAEDEDGAHGRRR 667 Query: 627 SERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDD 686 G ++ R + A AP + + Sbjct: 668 RRGRRGGRRMRDDFRPHEPFSWVRPWVPYGEDPFVWYDPAEDLKPVAAPPAAANDAAAEP 727 Query: 687 KRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVE 746 + A + A E + E V K ++ + + AE V Sbjct: 728 QPAAAEAAAPAPAVRAPQPEGDMEVWVELPAEEEKPKRARRSRSRGRGKAEAQAEEAVAA 787 Query: 747 ETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLR 806 E A E +V P E A + + +R + Sbjct: 788 EVAAPEAVVAPEPEAPAEPEPAAAEPEAAEPEKPAPKRRTRSRKAAAPVEAEATAAEPAA 847 Query: 807 VSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYP 847 + P + +P A +P+ A P Sbjct: 848 EPARPEPAPAAPAEPVAASVPEPEAPQAPDPAEISGPPPAP 888 Score = 92.7 bits (228), Expect = 7e-17, Method: Composition-based stats. Identities = 41/80 (51%), Positives = 53/80 (66%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K MLI+A EE RV +VDG R+ + D ES +Q + NIY K+TR+EPSL+AAFV+YG Sbjct: 3 KTMLIDAAHAEETRVVVVDGNRVEEFDFESQNRKQLRGNIYLAKVTRVEPSLQAAFVEYG 62 Query: 62 AERHGFLPLKEIAREYFPAN 81 RHGFL EI +Y+ Sbjct: 63 GNRHGFLAFNEIHPDYYQIP 82 >UniRef50_A8RTZ4 Putative uncharacterized protein n=1 Tax=Clostridium bolteae ATCC BAA-613 RepID=A8RTZ4_9CLOT Length = 385 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 111/403 (27%), Positives = 203/403 (50%), Gaps = 21/403 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + L+ + +++ A+V ++ L +E + NIY GK+ ++ ++ AAF+D Sbjct: 1 MDK-LVVTRRGDKVCTAVVSDGKVSQLMLEPDTADSLLGNIYIGKVQKVVSNINAAFIDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G G+ L+E + + L+ G E++VQ+ K+ +K +T + Sbjct: 60 GPGCTGYYSLQERWKP---------------ERLKTGDELVVQVSKDAVKSKAPVVTERL 104 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALA-SLELPEGMGLIVRTAGVGKSAE 178 S G Y VL G S +I + L+E L L + +G+IVRT V Sbjct: 105 SFTGRYCVLTVGKTGI-GFSAKIRDASYKARLRELLECDLAGTKDLGIIVRTNAVTVEEC 163 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 A++ +L+ ++ W+ + A R +++ + A RD + EI+ D P+ Sbjct: 164 AVREELAELMRTWQRLSAEAGCRVCYSCLYRALPGYIAAIRDSFGGTLEEIITDVPEYHR 223 Query: 239 LARQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 + ++ + D + ++ LY + PL Y +E+ E A + V L SGG +VI+ TE Sbjct: 224 ELKAYLEMCQKED-AGRLTLYEDSLLPLGKLYSLETAFEKALGKNVWLKSGGYLVIEPTE 282 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 A+T ID+N+ + + +++T + N+EAADEI RQ+RLR+L G+I++DFIDM ++ Sbjct: 283 AMTVIDVNTGKYSGRKKMQDTIYKINMEAADEIGRQIRLRNLSGIIIVDFIDMEREEDRK 342 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESS 400 A+ L E V +D + + ++ L+E++R+++ L E Sbjct: 343 ALLAHLVEVVSRDPVKTTVVDMTALNLVELTRKKVRKPLHEQV 385 >UniRef50_D2LHL1 Ribonuclease, Rne/Rng family n=1 Tax=Rhodomicrobium vannielii ATCC 17100 RepID=D2LHL1_RHOVA Length = 1049 Score = 449 bits (1155), Expect = e-124, Method: Composition-based stats. Identities = 223/724 (30%), Positives = 322/724 (44%), Gaps = 16/724 (2%) Query: 71 KEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLM 130 ++ E + I++V++ Q V++Q+ KEERG+KGAALTT++SLAG Y VLM Sbjct: 310 EDALEELPQRHKRRWRHYKIQEVIKRNQIVLIQVVKEERGSKGAALTTYLSLAGRYTVLM 369 Query: 131 PNNPRAGGISRRIE-GDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLK 189 PN GGISR+I DR LKE L++PEGMGLI+RTAG ++ ++ D + L+ Sbjct: 370 PNTASGGGISRKITVPADRKRLKEIAQELDVPEGMGLIIRTAGASRTKAEIKRDFEYLLR 429 Query: 190 HWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGR 249 WE ++ AP L+++E ++I R+ RD +DI EIL+ + AR+ + L Sbjct: 430 LWENVRDLTLKSTAPCLVYEEGDLIKRSIRDLYNKDIDEILVAGDEAHHEAREFMRML-M 488 Query: 250 PDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARA 309 P + + LY P+F+ Y++E Q+ F V L SGG IV++ TEAL AID+NS R+ Sbjct: 489 PSHAKNVLLYKEPEPIFTKYEVERQLNQMFSPVVTLKSGGYIVLNQTEALVAIDVNSGRS 548 Query: 310 TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQ 369 TR IE+TA TN+EAA+E+ARQ+RLRDL GLIVIDFIDM R+ R+VE +L+E++R Sbjct: 549 TREYSIEDTALKTNMEAAEEVARQVRLRDLAGLIVIDFIDMDERRNNRSVERKLKESLRH 608 Query: 370 DRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEE 429 DRARIQ+ HIS FGL+EMSRQRL + E S CP C G G +R ES++L ILR IE+ Sbjct: 609 DRARIQVGHISHFGLMEMSRQRLRQGVVEVSTVPCPVCQGVGHIRSIESVALMILRSIED 668 Query: 430 EALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRV 489 + + A Y+LN KRS + IE R GV V+ P+D+ H+ + R Sbjct: 669 HLRTQGAANITLTASTEAALYILNNKRSYLRDIELRY-GVTIVLQPDDKAHGAHFVLERG 727 Query: 490 RKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAP 549 + +H E +L +E E + PA A A + + + Sbjct: 728 AEAVPPVVG--DSRVVHMETASLAQADEEEEAEPASSPAAAATAEGEGEKRTSRRKRRRR 785 Query: 550 VVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRR 609 A P + G + TE A A + Sbjct: 786 RGRGDAAADAPLPNGHTVSMAEGSDDDDDDDDDTDGADEGVTEAGAQAVAAVNGEDRRES 845 Query: 610 KPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTA 669 + + + R RR R D+ +Q E Sbjct: 846 AEERQDGQFRRNRRRGRRGGRRHRDDFAGQPGEIPGLGEQPEIDFEH-----------GL 894 Query: 670 DEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKV 729 Q+P E Q E ++ E E + + Sbjct: 895 PVVQSPAAEAVTAEAHADTAPQLEQSVEVAPVEASVAVEAEPKPVQAVGEDATADVASSD 954 Query: 730 RYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNR 789 + E E AE + A V + E + Sbjct: 955 PVQSEAVAELAAEVASEPAAEAEAKPEALAAEADAPQSPNADVAEAVEAKPDEPAEEQVK 1014 Query: 790 DNGG 793 Sbjct: 1015 VEAE 1018 Score = 86.5 bits (212), Expect = 5e-15, Method: Composition-based stats. Identities = 39/92 (42%), Positives = 55/92 (59%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+AT EE RV + G R+ + D ES +Q + NIY K+ RIEPSL+AAFV+YG Sbjct: 3 NKMLIDATHPEETRVVVTRGNRVEEFDYESASRKQLRGNIYLAKVARIEPSLQAAFVNYG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKDV 93 RHGFL EI +Y+ + + ++ Sbjct: 63 GNRHGFLAFAEIHPDYYQIPVAVREQLMKEEA 94 >UniRef50_B0UJB2 Ribonuclease, Rne/Rng family n=4 Tax=Methylobacterium RepID=B0UJB2_METS4 Length = 1092 Score = 449 bits (1154), Expect = e-124, Method: Composition-based stats. Identities = 218/694 (31%), Positives = 327/694 (47%), Gaps = 5/694 (0%) Query: 71 KEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLM 130 + E + I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLM Sbjct: 388 GDALAEIPDRPRAPRRHYKIQEVIKRRQVILVQVVKEERGNKGAALTTYLSLAGRYSVLM 447 Query: 131 PNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLK 189 PN R GGISR+I DR LKE A LE+P+GMG+I+RTAG ++ ++ D + ++ Sbjct: 448 PNTGRGGGISRKITSAADRKRLKEIAADLEVPDGMGVILRTAGASRTKPEIKRDFEYLMR 507 Query: 190 HWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGR 249 WE++++ S AP L+++E ++I RA RD +DI E+L+ A+ + L Sbjct: 508 LWESVRELTLSSSAPALVYEEGSLIKRAIRDLYNKDIDEVLVAGDDAYREAKDFMRML-M 566 Query: 250 PDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARA 309 P S +K Y PLF+ Y +E Q+++ F V L SGG +VI+ TEAL +ID+NS RA Sbjct: 567 PSQSKVVKPYRDPTPLFARYGVEQQLDAMFSNHVALRSGGYLVINPTEALVSIDVNSGRA 626 Query: 310 TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQ 369 TR DIE+TA TNLEAA+E+ARQLRLRDL GLIVIDFIDM R+ RAVE +L E ++ Sbjct: 627 TREHDIEDTALKTNLEAAEEVARQLRLRDLAGLIVIDFIDMEEKRNNRAVERKLNECLKD 686 Query: 370 DRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEE 429 DRARIQ+ IS FGLLEMSRQR+ + ESS CP C G+G VR S++L ILR IEE Sbjct: 687 DRARIQVGRISPFGLLEMSRQRIRTGVLESSSVPCPHCGGSGFVRATSSVALQILRAIEE 746 Query: 430 EALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRV 489 +K ++ + +A Y+LN+KR + +ETR GV + ++++ L Sbjct: 747 ALIKSSSHNLILRTRTDVALYILNQKRGHLRELETRF-GVSITVSADERLPPTSAFHLDR 805 Query: 490 RKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRP--EQPALATFAMPDVPPAPTPAEPA 547 + + P + + EA+ P EE E + EQ A + A T E Sbjct: 806 GEPAQPPEPRLPVTSIRAEAVQPPPLEEEDEEEDETLEQAEGAAEEAGEAGGAGTEDEGG 865 Query: 548 APVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQD 607 + P + + G + E+ A + P + Sbjct: 866 GRRRRRRRRRRGRGEGRPGEIEGETETAGQEAVGDEAAGDEAAGEEAAGEETGLPAAGPE 925 Query: 608 RRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKAR 667 + + D RR R + ++ + E + + ++ Sbjct: 926 GDEEPGEGPVTIPITEGGEAVIAREGDEGGGRRRRRGRRGGRSRDRHEEAEVGHIGDEVV 985 Query: 668 TADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQ 727 + A D + ++ + + ++ Sbjct: 986 VGASETAEADPAGTLAQDALAEEIVAVGEISGPSPEAVAPASPAEMPDLTATEREAVRAD 1045 Query: 728 KVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAP 761 ++ + A P V P Sbjct: 1046 AIQAPEPEQAPAAPEPEPVAVVLTPPDPDRPKRA 1079 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 38/91 (41%), Positives = 54/91 (59%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+A+ EE RV V G ++ + D E+ Q + NIY K+TR+EPSL+AAFV+YG Sbjct: 3 NKMLIDASHPEETRVVTVKGSKVEEFDFEAANRRQLRGNIYLAKVTRVEPSLQAAFVEYG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKD 92 RHGFL EI +Y+ + +D Sbjct: 63 GNRHGFLAFSEIHPDYYQIPVADRLALLEED 93 >UniRef50_B6INB6 Ribonuclease, Rne n=1 Tax=Rhodospirillum centenum SW RepID=B6INB6_RHOCS Length = 1035 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 246/821 (29%), Positives = 380/821 (46%), Gaps = 17/821 (2%) Query: 86 GRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145 I++V++ Q ++VQ+ KEERGNKGAALTT++SL G Y VLMPN PR GGISR+I Sbjct: 226 KSYKIQEVIKRRQILLVQVTKEERGNKGAALTTYLSLPGRYCVLMPNTPRGGGISRKITN 285 Query: 146 -DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAP 204 DR +KE L L++P+GM +I+RTAG+ +S ++ DL + ++ W++I++ AP Sbjct: 286 PADRKRMKELLEGLDVPQGMSVILRTAGIERSKPEIKRDLEYLMRLWDSIRELTLQSVAP 345 Query: 205 FLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIP 264 LI++E+N+I R+ RD DI E++++ + A+ + L P + K++ Y +IP Sbjct: 346 ALIYEEANLIKRSIRDLYASDIDEVIVEGEQGYRTAKDFMRML-MPSHAKKVQPYKDDIP 404 Query: 265 LFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNL 324 LF +Q+E IE+ F V+L SGG IVI+ TEAL AID+NS R+T+ +IEETA TNL Sbjct: 405 LFHRFQVEGAIETMFDPVVQLRSGGYIVINQTEALVAIDVNSGRSTKERNIEETALRTNL 464 Query: 325 EAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGL 384 EAA+EIARQLRLRDL GLIVIDFIDM R+ +VE RL+EA++ DRARIQ+ IS FGL Sbjct: 465 EAAEEIARQLRLRDLAGLIVIDFIDMEEARNNASVEKRLKEAMKADRARIQLGRISPFGL 524 Query: 385 LEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVP 444 LE+SRQRL PSL E + CP C+GTG VR ES +L++LR IEEE ++ + E+ Sbjct: 525 LELSRQRLRPSLQEINFERCPHCAGTGLVRSVESAALAVLRAIEEEGIRRRSAEITVTAA 584 Query: 445 VPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPK 504 + Y+LN+KR ++ AIE R G+R + +D + P + + R+R + L Sbjct: 585 ASLVLYILNQKRESLTAIERRY-GLRVYLAADDSLTPPAHRLERLRARQPGDDLPVAQTT 643 Query: 505 LHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAA 564 + E + ++ + E L AP AE + + + Sbjct: 644 VSAEKVYAETDRALEVEEAEEAEELEEETEESAATAPQTAEERSQGDRDSRRRRRRRRRR 703 Query: 565 PAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRD 624 P + T P + + + D + ++ + Sbjct: 704 PGE-----------ARFGDAEATTLPADAETAERTEDAGAEGDEDEDADDDAGEEAGAEG 752 Query: 625 TRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRN 684 + S + + + + RR ++ ++ A R E +E + E + Sbjct: 753 SVSATGDDAQSLRKKRRRGKRGGRRRARQRIDGLPEIPGETLAEGEEAEGDDTEDGGAED 812 Query: 685 DDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPV 744 +A + + AL V + T E V + + +V A A Sbjct: 813 GGAGEAAEPSGALAVAGEGPALTGTETTVSEPVEPSPDAGVPGEAVTTGTVVAAAEPATA 872 Query: 745 VEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRH 804 E A + + APR + + P T + A + +R+R + Sbjct: 873 GTEPTAKP---KRSRAPRKKAAETPAAAAEATPVAEAAPAEAAEAEEKPKAKRTRAPRKK 929 Query: 805 LRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEE 864 + + + P V E + Sbjct: 930 TAETPAAAAEATPVAEAAPAEAAAAEEKPKAKRTRAPRKKTAAAETPAADTVTEAVTAVD 989 Query: 865 VHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEP 905 + VT A APV VV P++ + Sbjct: 990 TDMATAVTPAVETPAETSAAPAPVEAAPQAVVNPPIEAPKK 1030 Score = 86.1 bits (211), Expect = 7e-15, Method: Composition-based stats. Identities = 42/86 (48%), Positives = 54/86 (62%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 KRML++AT EE RV +V G RL +LD E +Q K NIY K+ R+EPSL+AAFV+YG Sbjct: 3 KRMLVDATHPEETRVVVVSGNRLEELDFEIASRKQLKGNIYLAKVIRVEPSLQAAFVEYG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGR 87 RHGFL EI +Y+ + Sbjct: 63 GNRHGFLAFSEIHPDYYRIPVADREA 88 Score = 44.1 bits (102), Expect = 0.033, Method: Composition-based stats. Identities = 49/440 (11%), Positives = 95/440 (21%), Gaps = 2/440 (0%) Query: 617 RDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPR 676 + E R + A + + + E+ Sbjct: 593 NQKRESLTAIERRYGLRVYLAADDSLTPPAHRLERLRARQPGDDLPVAQTTVSAEKVYAE 652 Query: 677 RERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVA 736 +R+ + + + E + + Q E+ + RR++R+ + A Sbjct: 653 TDRALEVEEAEEAEELEEETEESAATAPQTAEERSQGDRDSRRRRRRRRRRPGEARFGDA 712 Query: 737 EEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPR 796 E + E E E A+ + ++ R + Sbjct: 713 EATTLPADAETAERTEDAGAEGDEDEDADDDAGEEAGAEGSVSATGDDAQSLRKKRRRGK 772 Query: 797 RSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQV 856 R R R+ G ++ T + + +G+ + Sbjct: 773 RGGRRRARQRIDGLPEIPGETLAEGEEAEGDDTEDGGAEDGGAGEAAEPSGALAVAGEGP 832 Query: 857 EEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPE 916 + V + V + E Sbjct: 833 ALTGTETTVSEPVEPSPDAGVPGEAVTTGTVVAAAEPATAGTEPTAKPKRSRAPRKKAAE 892 Query: 917 VIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQ 976 AAA P A E +A+ P+++TA+ A V A Sbjct: 893 TPAAAAEATPVAEAAPAEAAEAEEKPKAKRTRAPRKKTAETPAAAAEATPVAEAAPAEAA 952 Query: 977 PAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFE 1036 A E A A + + T A Sbjct: 953 AAEEKPKAKRTRAPRKKTAAAETPAADTVTEA--VTAVDTDMATAVTPAVETPAETSAAP 1010 Query: 1037 GKGAAGGHTATHHASAAPAR 1056 A + AP + Sbjct: 1011 APVEAAPQAVVNPPIEAPKK 1030 >UniRef50_C9XNN6 Ribonuclease g n=8 Tax=Clostridium RepID=C9XNN6_CLODC Length = 473 Score = 448 bits (1152), Expect = e-124, Method: Composition-based stats. Identities = 137/497 (27%), Positives = 262/497 (52%), Gaps = 25/497 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK+++I + + + A+++ +RL +L +E +++ +NIY+G + ++ P +EA FVD Sbjct: 1 MKKIVIESLIGSQ-KTAVLEDERLTELFVEDNLNKKTVSNIYRGIVKKVIPGIEACFVDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++ +L LK+ + ++ GQ+++VQI+KEE G KGA L T I Sbjct: 60 GFKKLAYLQLKKGST------------------IKSGQDILVQINKEEIGTKGAKLNTEI 101 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 S++G Y+V +P+N R IS +I + +R LK+ ++ E +GLI+RT G + + Sbjct: 102 SISGRYIVYIPSNDRTT-ISNKITDEKERFRLKKITKAVNK-ENLGLIIRTEAQGCTHDE 159 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 ++ D+ +E I K + P L+++ + + +D + DI I+ ++ Sbjct: 160 IKKDIEELKLKYENILKEYKLGIGPKLLYKSLDFATKYVKDNVNDDIESIITNSYDKYSE 219 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + + + + + K+ L +F Y+IES+IE ++V L SGG ++I+ TEAL Sbjct: 220 LKSILRGIDKT-YVDKLCL-EENRDVFDLYRIESKIEKLLNKKVWLKSGGYLIIEKTEAL 277 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+N+ + G ++ET + TNLEAA EI RQL +RD+ G+I+IDFIDM +HQ+ + Sbjct: 278 TVIDVNTGKFIGTGKLDETVYKTNLEAAKEIVRQLIIRDIAGIIIIDFIDMHKKKHQKEI 337 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 + L E +D+ + ++ +++ GL+E++R+R S+ + CP C G T++ + Sbjct: 338 LHILEEEFNKDKRKAEVLGMTKLGLVEVARRREKESIDKYYLMSCPCCDGEQTIKSVHYI 397 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 SI + I + + + I + ++ I + + ++ + N + Sbjct: 398 LDSIEKEIMRISEHTVYKNIMVEFNDFIFEQIKEYYMDIIDKIGEKYN-IKISLNANSTL 456 Query: 480 ETPHYHVLRVRKGEETP 496 + +V+ + + Sbjct: 457 KHNKTNVIFDKIVDNKM 473 >UniRef50_A7HQG8 Ribonuclease, Rne/Rng family n=1 Tax=Parvibaculum lavamentivorans DS-1 RepID=A7HQG8_PARL1 Length = 506 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 151/506 (29%), Positives = 240/506 (47%), Gaps = 24/506 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHE-----------QKKANIYKGKITRI 49 M ++ E RVA+V+ R +L +E + NI+ G++ R+ Sbjct: 1 MSEEVLINVGPGETRVAIVEDGRPVELFLERTMEDDLKAKTGRAGHSLIGNIFLGRVQRV 60 Query: 50 EPSLEAAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEER 109 P ++AAFV+ G ER GFL +E P I ++EGQ ++VQ K+ Sbjct: 61 LPGMQAAFVEVGLERAGFLGAREARCLCELTGLDEGTLPPISACVQEGQTILVQAVKDPI 120 Query: 110 GNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLE--------L 160 +KGA L+ +++ G LVL+PN +SRRIE + +R L + + Sbjct: 121 SDKGARLSANVTIPGRLLVLVPNQSGV-ALSRRIEDEPERERLAALVEEMVERFNPMGVT 179 Query: 161 PEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRD 220 E G IVRTA +G +AE + D + W +++ + AP ++ + + + + RD Sbjct: 180 GEPAGFIVRTAAIGATAEDIAADARQLAEEWRKVRETEKRSTAPCVVFHDLDPVSKTLRD 239 Query: 221 YLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQ 280 + D +LID A+++ P+ +I+L+ G LFS Y ++ +IE+A + Sbjct: 240 CVSADTSRVLIDCADAFGEAQRYCRR-AMPEMLDRIQLFNGPGQLFSLYDVDGEIEAALE 298 Query: 281 REVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLG 340 LPSGG I +++TEALTAID+NS R T +EET+ NLEA EI QLRLR G Sbjct: 299 PRAELPSGGWITVETTEALTAIDVNSGRYTAATGLEETSVKINLEAVHEIVYQLRLRGTG 358 Query: 341 GLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESS 400 GLIVIDFI + + + V + L E +DR QIS +S FGL+EM+R+R+ L + Sbjct: 359 GLIVIDFIHLNDPANIQKVIDALNEGFAKDRVPTQISGMSEFGLVEMTRKRVREPLDKLL 418 Query: 401 HHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVN 460 G + +++ +LR I EA + + A V + +L + Sbjct: 419 TEP-AYPHGRPRRKTCATMANDLLRRIAREAQATPGRPLVARASVEVVDWL-ERGNPYLV 476 Query: 461 AIETRQDGVRCVIVPNDQMETPHYHV 486 R+ ++ V Sbjct: 477 ERLRRKVPADISLIGEPAFPRERIDV 502 >UniRef50_D2SCS1 Ribonuclease, Rne/Rng family n=39 Tax=Bacteria RepID=D2SCS1_9ACTO Length = 1048 Score = 447 bits (1149), Expect = e-123, Method: Composition-based stats. Identities = 173/671 (25%), Positives = 298/671 (44%), Gaps = 16/671 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R ++ + E ++A+++ L + + N+Y G++ + PS+EAAF+D Sbjct: 384 VDRKMVIRQRGERTQIAVLEDDVLVEHYVTQAQATSFAGNVYLGRVQNVLPSMEAAFIDI 443 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + + + +I+ L+ G +V+VQ+ K+ G+KGA LT + Sbjct: 444 GKGRNAVLYAGEVNWDAAGL---SGKQRSIEQALKSGDKVLVQVTKDPIGHKGARLTQQV 500 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +L G +LV +P GISR++ +R LK+ L + +PE G+I+RTA G S E L Sbjct: 501 NLPGRFLVYVPGGSMT-GISRKLPDTERQRLKDVLKKI-VPEDAGVIIRTAAEGASEEEL 558 Query: 181 QWDLSFRLKHWEAIKKAAESRP-APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 D++ W+ I++ AES AP L++ E ++ +R RD +D E+++ + Sbjct: 559 TRDVNRLQAQWDVIQRKAESSSNAPSLLYGEPDLAIRVIRDVFNEDFKELVVQGDDAWDT 618 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 ++A + P+ ++ +TGE +F +I+ Q+ A R+V LPSGGS+VID TEA+ Sbjct: 619 VEAYVAHVS-PELVGRLTRHTGEGDVFRDLRIDEQLAKALDRKVWLPSGGSLVIDRTEAM 677 Query: 300 TAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 T +D+N+ + T GG++E+T N+EAA+EI RQLRLRD+GG+IVIDFIDM ++ Sbjct: 678 TVVDVNTGKFTGSGGNLEQTVTRNNMEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDL 737 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 V RL E + +DR + Q++ ++ GL++M+R+R+ L E C C G G V + Sbjct: 738 VLRRLTECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLLEVFSEPCEHCRGRGVVVHIDP 797 Query: 419 LSLSILRLIEEEAL--------KENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVR 470 + + ++ ++ + + V E G Sbjct: 798 VDEKRRGGGNAGSGNGGNGRRDQQRGKDNGGKENGARDAGAKDSGGKDVEPAEAVAVGAE 857 Query: 471 CVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALA 530 + E R+ S + E A+ + + A+ Sbjct: 858 APVPDGADGEGEGQRSGGSRRNRGRRNRSQSGEERAAEDAAVLAAAAEDADAPDPEVAVV 917 Query: 531 TFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKP 590 PD EP A + A PA APA+ L G E + Sbjct: 918 EPDQPDAVTPEQAPEPVAELAQEPVPAEPAQGPAPAEQALAEPSLAEPVDRAMGAEGSDD 977 Query: 591 TEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQT 650 P P + T + +D+ + +++ Sbjct: 978 EAVPPGAGPDDPGPMDAEPPAEPAPADTPSSEGATGETQPPVADDGSATAAPVTRPRRRR 1037 Query: 651 AETRESRQQAE 661 A +R + A Sbjct: 1038 AASRPAGPPAS 1048 >UniRef50_B8HA23 Ribonuclease, Rne/Rng family n=1 Tax=Arthrobacter chlorophenolicus A6 RepID=B8HA23_ARTCA Length = 1151 Score = 447 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 182/709 (25%), Positives = 312/709 (44%), Gaps = 27/709 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R +I + + +++ +++ L + + + N+Y GK+ + PS+EAAFVD Sbjct: 431 VDRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDI 490 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ E I++ L+ G V+VQ+ K+ G+KGA LT+ I Sbjct: 491 GRGRNAVLYAGEVNWEAVNLEGKQR---RIENALKSGDTVLVQVTKDPVGHKGARLTSQI 547 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLV +P GISR++ +R LK L LPE G+IVRTA G S E L Sbjct: 548 SLPGRYLVYVPGGSMT-GISRKLPDVERNRLKRILKD-RLPEQAGVIVRTAAEGASEEEL 605 Query: 181 QWDLSFRLKHWEAIKKAAESRP--APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 D++ WE I+ + S AP L++ E ++ ++ RD +D ++++ + + Sbjct: 606 THDINRLRAQWEGIESQSSSTKVLAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGEEAWD 665 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 ++ + PD +++ +T + +F+ ++I+ QI A +R+V LPSGGS+VID TEA Sbjct: 666 TIEAYVTYVA-PDLVGRLEKWTKDQDIFAAWRIDEQIHKALERKVFLPSGGSLVIDRTEA 724 Query: 299 LTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 +T +D+N+ + T GG++EET NLEAA+E+ RQLRLRD+GG+IVIDFIDM ++ Sbjct: 725 MTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRD 784 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V R+ E + +DR + Q++ ++ GL++M+R+R+ L E C C+G G V ++ Sbjct: 785 LVLRRMVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEACAGRGVVTHDD 844 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 + V A V + + R+ N E +++ Sbjct: 845 PVEHR------------RANIVAAEQHVHRSDARPSGNRNEGNRSEGQRN------EGQR 886 Query: 478 QMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 + ++ + A P + + E +R + A+ ++ Sbjct: 887 TDVNQEGNRGERKRRRGRGGQAAEPAPAPAAVAAHPVQPDPHEAERHAKAEATRLALANI 946 Query: 538 PPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPK 597 A A VA A + A F G + P + A + Sbjct: 947 AAAAHAAHLHDDEVAARQTPALQDAGTTEKHDDGMPARPAAVLTFGGEKVALPFVEHADE 1006 Query: 598 AEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESR 657 +A P DR + + S + + + + + Sbjct: 1007 HQASPALSLDRLAEAFAHLGQPASPVGSPSRESGTAQAAPAAPEPAEEVASAPRQPVAAA 1066 Query: 658 QQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQE 706 A A TAD + R R+R + + A + + E Sbjct: 1067 APARELNAAATADPSRQRRPRRNRSASRAQGAANATTVEHHESVPAASE 1115 >UniRef50_B5ZDP7 Ribonuclease, Rne/Rng family n=12 Tax=Alphaproteobacteria RepID=B5ZDP7_GLUDA Length = 1009 Score = 447 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 244/846 (28%), Positives = 358/846 (42%), Gaps = 10/846 (1%) Query: 86 GRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG 145 I++V+R Q ++VQ+ KEERGNKGAALTT+ISLAG Y VLMPN+ R GG+SR+I Sbjct: 161 RNYKIQEVIRRRQILLVQVVKEERGNKGAALTTYISLAGRYCVLMPNSLRGGGVSRKITS 220 Query: 146 -DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAP 204 DR LK+ +A L++P GM +IVRTAG + + D + L+ W+ I+ AP Sbjct: 221 VADRRRLKDVIAELQIPRGMAMIVRTAGAQRPRPEIMRDCEYLLRLWDDIRDHTMHSVAP 280 Query: 205 FLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGE-I 263 LI++E+++I RA RD +D+GEIL+D + AR+ + L P + K+K + Sbjct: 281 ALIYEEASLIKRAIRDIYTRDVGEILVDGEAGWKSAREFMRML-MPQSAPKVKCWRDGGQ 339 Query: 264 PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTN 323 PLFSH+ +E ++S V+L SGG +VI+ EAL AID+NS RATR +IEETA TN Sbjct: 340 PLFSHFNVEGLLDSMLSPTVQLRSGGYLVINQAEALVAIDVNSGRATRERNIEETALRTN 399 Query: 324 LEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFG 383 LEAA+E+ARQLRLRDL GLIVIDFIDM +H VE RL++A+R DRARIQ+ IS FG Sbjct: 400 LEAAEEVARQLRLRDLAGLIVIDFIDMESRKHNGMVERRLKDALRTDRARIQVGAISHFG 459 Query: 384 LLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIV 443 LLEMSRQRL PS+ ES+ CP C GTG +R ES +L +LR +EEE + E+ V Sbjct: 460 LLEMSRQRLRPSIAESTFTPCPHCQGTGIIRGTESAALHVLRAVEEEGARRRAAEITVHV 519 Query: 444 PVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLP 503 IA Y+LN KR+ ++ IE R + V P+ + P + RVR E Sbjct: 520 AAEIALYILNNKRAWLSEIEKRH-KMHVVFSPDASLLPPQLRIERVRPQTERFEPVAPPV 578 Query: 504 KLHEEA--MALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPAT 561 R+ P Q A AP E + Sbjct: 579 LAEPTDILAEETEAAAPVVREIPIQAEAPADAAVAAEAAPVSTEEGEEGTDHRRRRRRRR 638 Query: 562 PAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNE 621 + + +A + + + E P + R + Sbjct: 639 RRRGGERAEGAPQAVPAEAADAEQADEDAGHGNEGEEETVPTIHAESVPEPAPAREEGGR 698 Query: 622 RRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA----EVTEKARTADEQQAPRR 677 R+ R + + + + +V E++ A + R Sbjct: 699 DRNRRRRDRQDRRPAQPAAPPAQAPYRGPTPANPFGDGILDIFDVIEQSTEAPQAPVRRP 758 Query: 678 ERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAE 737 E + D A+ A + ++ E E PV+ + + + Sbjct: 759 EPNAMPADIVDVAETLAVSEPEAVPAIVEAEIVIEAAPVEAAPVEAEPVEVEAETVETPA 818 Query: 738 EAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRR 797 + ++ AE + EAP TE V P+++ Sbjct: 819 KPRRRTRARKSAVAEAMTAEAPDSTTEPAPVAAEAEEPAKPKRRRAATPRKTAAKAAAEE 878 Query: 798 SRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVE 857 + + + + P A+ + K D Sbjct: 879 PTVADSAPPATAEAVPAEDAAEAAPKKPTRKRTTRATTTTRARKAKPAEDAATEADATEA 938 Query: 858 EQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEV 917 + E + P A A E + P + + + Sbjct: 939 AEPAPEAPAKPRRTRKAPARAKAAAKPQAEAEAEATAEATPEAEKTAPVVQPIVIDDSKP 998 Query: 918 IAAAVT 923 A T Sbjct: 999 APARKT 1004 Score = 85.7 bits (210), Expect = 9e-15, Method: Composition-based stats. Identities = 42/86 (48%), Positives = 56/86 (65%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 KRMLI+ T EE RV ++DG RL D D+E+ +Q K NIY K+ R+EPSL+AAFV+YG Sbjct: 3 KRMLIDTTHAEETRVVVMDGNRLEDYDVEASAKKQLKGNIYLAKVIRVEPSLQAAFVEYG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGR 87 RHGFL EI +Y+ + + Sbjct: 63 GNRHGFLAFSEIHPDYYQIPVADREK 88 Score = 49.1 bits (115), Expect = 8e-04, Method: Composition-based stats. Identities = 67/445 (15%), Positives = 101/445 (22%), Gaps = 21/445 (4%) Query: 636 REENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAK 695 + R R + Q + E AE T+ E AP + + A A+ Sbjct: 556 PPQLRIERVRPQTERFEPVAPPVLAEPTDILAEETEAAAPVVREIPIQAEAPADAAVAAE 615 Query: 696 ALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIV 755 A V + +E R R + RR+ + + + E Sbjct: 616 AAPVSTEEGEEGTDHRRRRRRRRRRRGGERAEGAPQAVPAEAADAEQADEDAGHGNEGEE 675 Query: 756 QEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQ----- 810 + P E V P P + ++ P + + Sbjct: 676 ETVPTIHAESVPEPAPAREEGGRDRNRRRRDRQDRRPAQPAAPPAQAPYRGPTPANPFGD 735 Query: 811 ------------RRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQ----DV 854 R P + MP + + LA + IV + Sbjct: 736 GILDIFDVIEQSTEAPQAPVRRPEPNAMPADIVDVAETLAVSEPEAVPAIVEAEIVIEAA 795 Query: 855 QVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTH 914 VE + E T A + A EAP EP P E Sbjct: 796 PVEAAPVEAEPVEVEAETVETPAKPRRRTRARKSAVAEAMTAEAPDSTTEPAPVAAEAEE 855 Query: 915 PEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVV 974 P P+ A VA+ A P D E Sbjct: 856 PAKPKRRRAATPRKTAAKAAAEEPTVADSAPPATAEAVPAEDAAEAAPKKPTRKRTTRAT 915 Query: 975 AQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFA 1034 A A E A TR A ++ + A Sbjct: 916 TTTRARKAKPAEDAATEADATEAAEPAPEAPAKPRRTRKAPARAKAAAKPQAEAEAEATA 975 Query: 1035 FEGKGAAGGHTATHHASAAPARPQP 1059 A ++P P Sbjct: 976 EATPEAEKTAPVVQPIVIDDSKPAP 1000 >UniRef50_A6LQR5 Ribonuclease, Rne/Rng family n=8 Tax=Clostridium RepID=A6LQR5_CLOB8 Length = 482 Score = 446 bits (1147), Expect = e-123, Method: Composition-based stats. Identities = 132/508 (25%), Positives = 233/508 (45%), Gaps = 27/508 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK + + ++ LRVA+ L + +E +E IYKGKI I P++ + FVD Sbjct: 1 MKEIFVERRER-ILRVAIKSNNELIESIVEESKNEPIIGEIYKGKIKNIIPAINSVFVDL 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++ G+L + + +++G +++V++ KE +KGA LT + Sbjct: 60 GLDKEGYLYYSDELKA---------------KGIKKGDDILVEVLKEPLNDKGAKLTAKV 104 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 S+ G Y+VL + S+RIE ++ E L+++E + + + VRT G L Sbjct: 105 SIPGKYIVLNCY-EQGIEFSKRIEDKEKK--IELLSNIEPLKDVCITVRTEGANVDINIL 161 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 + ++S ++ I K + I+ E + + ++ ++I +I +DN + Sbjct: 162 KNEISKLYDEFQNIDKKMKHSLGVRKIYGEDLTLTKLLMNFSGEEIIKIYVDNSIDFDKI 221 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + + KI+ Y G LF Y IE ++ +V L GG IVID TEA+ Sbjct: 222 SSF----AKGQENLKIEKYEGYRKLFDFYGIEKELLRLRHNKVNLQCGGYIVIDRTEAMY 277 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ID+NS + + +T TNLEAA EI +Q+RLR+L G+IVIDFIDM + V Sbjct: 278 VIDVNSGKNIKEKSFNKTILETNLEAAREIGKQIRLRNLSGIIVIDFIDMRDKSQRDIVM 337 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 + L+E++R D+ ++I ++ L++++R+R S+ E C C G G + Sbjct: 338 DALKESLRLDKGNVKIFPFTQLDLVQIARKRQGKSIYEYMEEECSLCKGRGIILKLSY-- 395 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 I LI+ + ++ + + + S + R + DG+ I N Sbjct: 396 --IEGLIKNDIVRMQEESSINCFHIQMDSVYKDRIRENIFEFMKEIDGLDKEIYLNYVDN 453 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEE 508 Y + + + L + E+ Sbjct: 454 IEGYKIEPLIFQGQKDNLKDYKVTVIEK 481 >UniRef50_A3EQR7 Ribonucleases G and E n=3 Tax=Leptospirillum RepID=A3EQR7_9BACT Length = 527 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 165/526 (31%), Positives = 257/526 (48%), Gaps = 46/526 (8%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 ++ EE +VALV+ ++L + E NIYKG++ ++ P ++AAFVD G E Sbjct: 2 EILIHVSHEETKVALVENRQLAEFFFERKREAGVVGNIYKGRVNKVLPGMQAAFVDVGLE 61 Query: 64 RHGFLPLKEIAREY----------------------------------------FPANYS 83 + FL + +I E P Sbjct: 62 KAAFLYVDDIYVEGSDILPGEMPQDDQTAPPPPVEGESPAEGSLTEDPAAGPVSRPEPPR 121 Query: 84 AHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRI 143 R I+++L EGQE+++Q+ KE KG TT+ISL G YLV MP G+SRRI Sbjct: 122 KVPRKPIEEILTEGQEILIQMTKEPISTKGPRATTYISLPGRYLVYMPQVNHV-GVSRRI 180 Query: 144 EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPA 203 ++ + + + + G I+RT G S + D+ F W+ I+ AE+ A Sbjct: 181 TNEEERQRLKEMVNALKGGKGGYIIRTVAEGMSESEARSDIIFLELLWQDIRSRAETMKA 240 Query: 204 PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEI 263 P L+ ++ +V+ R RDYL ++ + ID+ K + I PD++S+++L+ G Sbjct: 241 PSLVREDLDVVFRTIRDYLTHEVETLYIDDVKEYKRVMDFIGTY-MPDYASRVRLWEGPT 299 Query: 264 PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTN 323 PLF+ Y IE Q+ A +++V L SGG +VID EALT ID+N+ R D E T TN Sbjct: 300 PLFASYDIERQLSKALEKKVWLKSGGYLVIDRAEALTVIDVNTGRFVGENDPESTILQTN 359 Query: 324 LEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFG 383 LEA EIARQLRLR++GG+I+IDFIDM +++ V L+E++ D+AR IS G Sbjct: 360 LEAVTEIARQLRLRNIGGIIIIDFIDMEKEKNREKVFQGLQESLAHDKARTNALKISDLG 419 Query: 384 LLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEE---ALKENTQEVH 440 L+EMSR+R+ L C C G G + +++ IL + ++ Sbjct: 420 LVEMSRKRVREDLVHLLGETCAYCDGKGYTKSLRTIAYEILEELRSVPSGGQNPKEKKAI 479 Query: 441 AIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHV 486 V I + L E+R + A+E + + +I P+ + + Sbjct: 480 LFVHPEIQTILQEEERDFLQAVERKIR-RQIIIKPDPLSHIEEFSI 524 >UniRef50_A0JXK2 Ribonuclease, Rne/Rng family n=4 Tax=Actinomycetales RepID=A0JXK2_ARTS2 Length = 1113 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 179/732 (24%), Positives = 307/732 (41%), Gaps = 14/732 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R +I + + +++ +++ L + + + N+Y GK+ + PS+EAAFVD Sbjct: 381 VDRQMIVRQRDDRIQIGVLEDGVLAEHFVSKTQQDSLIGNVYLGKVQNVLPSMEAAFVDI 440 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + I++ L+ G V+VQ+ K+ G+KGA LT+ I Sbjct: 441 GRGRNAVLYAGEVNWDAVNLEGKQR---RIENALKSGDSVLVQVTKDPVGHKGARLTSQI 497 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLV +P GISR++ +R LK L LPE G+IVRTA G S E L Sbjct: 498 SLPGRYLVYVPGGSMT-GISRKLPDVERNRLKRILKD-RLPEDAGVIVRTAAEGASEEEL 555 Query: 181 QWDLSFRLKHWEAIKKAAESRP--APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 D++ WE I+ A S AP L++ E ++ ++ RD +D ++++ + + Sbjct: 556 THDINRLRAQWEGIESQATSTKILAPELLYGEPDLTIKVVRDVFNEDFSKLIVSGEEAWD 615 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 ++ + PD +++ +T + +F+ ++I+ QI A R+V LPSGGS+VID TEA Sbjct: 616 TIEAYVTYVA-PDLVGRLEKWTKDTDIFAAWRIDEQIHKALDRKVFLPSGGSLVIDRTEA 674 Query: 299 LTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 +T +D+N+ + T GG++EET NLEAA+E+ RQLRLRD+GG+IVIDFIDM ++ Sbjct: 675 MTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEVVRQLRLRDIGGIIVIDFIDMVLESNRD 734 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V R+ E + +DR + Q++ ++ GL++M+R+R+ L E C C+G G V +E Sbjct: 735 LVLRRMVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFGEQCEACAGRGIVTHDE 794 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 + + E + T+ + + A A+ V ++ Sbjct: 795 PVEHRRANTVAAEHHVQRTEAQQPPRTERKSRRRGKGGQPASEAVPLTPAPVH-----HE 849 Query: 478 QMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 E + + + ++ + A + Q A Sbjct: 850 PTEAERHAKAEATRVALANIAAAAHAAHLHDSETGHAAPAAAAQASAAQAVGQALAAQAP 909 Query: 538 PPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPK 597 + A A PA ++ + A F G + P + A + Sbjct: 910 SGQAGATAGEGAAQPSTTQPATARPAKVSESEAAAAGRPAAVLTFGGEKVALPFVEHAGE 969 Query: 598 AEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESR 657 A A R + + E + Sbjct: 970 APASGAALTLDRLAEAFAHLGEPAAAEAPASPAEQQAPSAQAPVEAPARVPSVQAPAAPA 1029 Query: 658 QQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQ 717 +A+ T+ + PRR RS R + T + + P + Sbjct: 1030 AEADYTDHTAVQGRARRPRRHRSASRAQGAANETSVEHHETAPVAASGHTHEAKAPEPAK 1089 Query: 718 PRRKQRQLNQKV 729 + + Sbjct: 1090 KDVPAKAPASEP 1101 >UniRef50_B2GGD5 Putative ribonuclease n=1 Tax=Kocuria rhizophila DC2201 RepID=B2GGD5_KOCRD Length = 1145 Score = 445 bits (1145), Expect = e-123, Method: Composition-based stats. Identities = 173/799 (21%), Positives = 321/799 (40%), Gaps = 12/799 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 ++R ++ +++ +++ +++ L + + + N+Y GK+ + PS+EAAFVD Sbjct: 330 VERTMLVRQKEDRIQIGVLEDGILAEHFVSHTTQDSLIGNVYVGKVQNVLPSMEAAFVDI 389 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + + I++ L+ G V+VQ+ K+ G+KGA LT+ + Sbjct: 390 GRGRNAVLYAGEVDWDAAEMGHKPR---KIENALKSGDTVLVQVTKDPVGHKGARLTSQV 446 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLV +P GISR++ +R LK+ L LPEG G+IVRTA G S L Sbjct: 447 SLPGRYLVYVPGGSMT-GISRKLPDVERQRLKKILKD-RLPEGAGVIVRTAAEGASETEL 504 Query: 181 QWDLSFRLKHWEAIKKAAESRP--APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 D++ WE I++ A S AP L++ E ++ ++ RD +D +++ + + Sbjct: 505 TNDINRLRSQWEQIQEKAGSTKTLAPELLYAEPDLTIKTVRDVFNEDFTAMVVQGEQAWD 564 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 ++ + PD +++ +T + LF H ++E QI+ A +R+V LPSGGS+VID TEA Sbjct: 565 NIEAYVTYVA-PDLLDRLQRWTEDEDLFEHMRVEEQIQKALERKVFLPSGGSLVIDRTEA 623 Query: 299 LTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 +T +D+N+ + T GG++EET NLEAA+EI RQLRLRD+GG+IV+DFIDM ++ Sbjct: 624 MTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRD 683 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V RL E + +DR + Q++ ++ GL++M+R+R+ L E C C+G G + + Sbjct: 684 LVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLLEVFSEPCEECAGRGVLVHDH 743 Query: 418 SLSLSILRLI--EEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVP 475 L + + P + + + + R + R Sbjct: 744 PLKGRSTASAPDHRGNRNDRKRSRQKQQHQPQEKQPSPARSKSPDEQQARDEAARTAFAT 803 Query: 476 NDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMP 535 + + + + + E + Sbjct: 804 IAAASSHEDDAAQHGSRDAAASSGSASGAADSARDHQAAGGPGDESHGESEGGRRRKKRR 863 Query: 536 DVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPA 595 + + T G + L G ++ ++ Sbjct: 864 GKRSRGRTQQGEDGGSSQETSREDHTQGQDGGAASQLTIGGEVVELPQGHQDRGTAQESL 923 Query: 596 PKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNRE-ENRRNRRQAQQQTAETR 654 + + + DR+ R + +AE Sbjct: 924 TLDSLSAAFSGEDTSGEETSGGDRSGSGSRSGGAGRQRRGRRVATAPGTATGARGSAEDA 983 Query: 655 ESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVR 714 + ++ + D + R + +Q + ++++ ++ ++ Sbjct: 984 DRSSDSQGGKSGAGQDSDTQRDQSGGGRSRNGGAGNRQSGSGWSEDDKTGRDQSGRDQSG 1043 Query: 715 PVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVA 774 + + + A +A + + V A AP T V+ + Sbjct: 1044 SSRSGGAGTAPSAAGQNAPGAAGQAAPSTPARRRRGSRRAVAPAAAPGTASVETREYEAS 1103 Query: 775 QTAPEQQEENNADNRDNGG 793 A + R Sbjct: 1104 AGAASRFTAEATAVRTAPS 1122 >UniRef50_Q0C4E1 Ribonuclease, Rne/Rng family n=2 Tax=Hyphomonadaceae RepID=Q0C4E1_HYPNA Length = 909 Score = 444 bits (1142), Expect = e-123, Method: Composition-based stats. Identities = 210/728 (28%), Positives = 317/728 (43%), Gaps = 13/728 (1%) Query: 85 HGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIE 144 R I++V+R Q ++VQ+ KEERGNKGAALTT++SLAG Y VLMPN PR GGISR+I Sbjct: 176 SKRYKIQEVIRRRQVMLVQVVKEERGNKGAALTTYLSLAGRYSVLMPNTPRGGGISRKIV 235 Query: 145 GD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPA 203 DR LK ++ L++PEG GLIVRTAG ++ ++ D + K WE I + S A Sbjct: 236 NSADRKRLKSIVSELDVPEGQGLIVRTAGAKRTKIEIKRDYDYLSKLWEQIVEKTLSSEA 295 Query: 204 PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEI 263 P LI+ E ++ RA RD ++I E+ + + A+ +A + P + K++ + E Sbjct: 296 PALINAEGGLVHRAMRDMFDKEIEEVWVQGDEAYREAKD-LAKIIMPSQAKKVQQWREED 354 Query: 264 PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTN 323 PL+ +E+Q++S + V+L SGG +VI+ TEAL AID+NS ++TR +IE+TA TN Sbjct: 355 PLYVAEAVENQLDSIYSPVVQLKSGGYLVINQTEALVAIDVNSGKSTRERNIEQTAVRTN 414 Query: 324 LEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFG 383 LEAA+E RQ+RLRDL GLIVIDFIDM ++ RAVE RL+E ++ DRAR+Q IS+FG Sbjct: 415 LEAAEEACRQMRLRDLAGLIVIDFIDMEENKNNRAVEKRLKECLKVDRARVQHGRISQFG 474 Query: 384 LLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIV 443 L+E+SRQR + +++ C C+GTG R S +L ++R IE A + + Sbjct: 475 LMEISRQRRRQGVLQATSDPCSACNGTGRRRSIPSAALQLIRAIEARAATGGLKGIGVKA 534 Query: 444 PVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLP 503 P +A Y+LN KR A+ R G I ++ M + + R P Sbjct: 535 PTDVALYILNNKREALIE-IERLAGFAISIHSSEDMLPGDFQIDADRDPNAKPKKRSTPR 593 Query: 504 KLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPA 563 L + +++ E + D A + Sbjct: 594 SLMKPTPPSARDDDDEEIDDEDVIEDEAGEDDDGETPAAAANKDKQGGGRRRRRRGGRNR 653 Query: 564 APAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERR 623 A+ L A E+ + + E D + RR Sbjct: 654 GEARETGLEVVDAEPAADADASEDDDDEDDGEDTSNGSAEAGSDDSDAARKRRRRGRRGG 713 Query: 624 DTRSERTEGSDNREENRR----------NRRQAQQQTAETRESRQQAEVTEKARTADEQQ 673 R EG + A +E + + T DE + Sbjct: 714 RRRRRGGEGRGENGDIAAIADGGAFLDGLSVSADVMLSEDEPAIGLPAAADTQDTDDESE 773 Query: 674 APRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQ 733 + + A + + + +P + + Sbjct: 774 TKAAPAEAAADAAETDEAPAATEEAAPRPARSRSRRGRGSKPAPEETPSAEETAPAAEAE 833 Query: 734 SVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGG 793 + AE + A EP+ + P P P A E E + Sbjct: 834 AEAEAEAPVVEAAQEAAPEPVAEAEPEPEMAQADFAPPKAAAVEAEPAPEPEGAPAPSAA 893 Query: 794 MPRRSRRS 801 P +R+ Sbjct: 894 EPPAPKRA 901 Score = 91.1 bits (224), Expect = 2e-16, Method: Composition-based stats. Identities = 42/87 (48%), Positives = 57/87 (65%), Gaps = 1/87 (1%) Query: 1 MKR-MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 M R MLI+A EE RVA+V+ ++ D D E+ G+EQ + NIY K+TR+EPSL+AAFV+ Sbjct: 1 MSRLMLIDAAHPEETRVAIVNNGQVDDFDFEATGNEQLRGNIYLAKVTRVEPSLQAAFVE 60 Query: 60 YGAERHGFLPLKEIAREYFPANYSAHG 86 YG RHGFL EI +Y+ + Sbjct: 61 YGGNRHGFLAFSEIHPDYYQLPAADRE 87 >UniRef50_UPI0001BC2E10 putative ribonuclease n=1 Tax=Brevibacterium linens BL2 RepID=UPI0001BC2E10 Length = 1076 Score = 444 bits (1141), Expect = e-122, Method: Composition-based stats. Identities = 168/645 (26%), Positives = 281/645 (43%), Gaps = 17/645 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDI-ESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 + R ++ E+ ++ +V+ + + E+ N+Y GK+ + PS+EAAF+D Sbjct: 434 VDRTMLVRESGEQTQLVVVEDGITVEHYLKENRQQSSLIGNVYLGKVQNVLPSMEAAFID 493 Query: 60 YGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G R+ L E+ + + A I+ L G V+VQ+ K+ G+KGA LT+ Sbjct: 494 IGKGRNAVLYAGEVNWDALGMDGKAR---RIEVALSPGDAVLVQVTKDPIGHKGARLTSQ 550 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ISL G +LV +P N GISR++ +R LK+ L L G+IVRTA G S + Sbjct: 551 ISLPGRFLVYVPGNSMT-GISRKLPDVERNRLKKLLKELVGDSN-GVIVRTAAEGASDKE 608 Query: 180 LQWDLSFRLKHWEAIKKAAESRP--APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 L D+ K WE I+K ++S AP L++ E ++IVR RD +D ++ID Sbjct: 609 LSTDVERLAKRWETIEKKSKSTKVLAPQLLYSEPDMIVRIIRDVFNEDFSSLVIDGDGAW 668 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 +++ A+ PD ++ Y+ + +F HY++E Q++ A QR V LPSGGS+VID TE Sbjct: 669 NTIHEYVEAVA-PDLLDRVHRYSEDEDIFDHYRVEEQVQKALQRTVNLPSGGSLVIDRTE 727 Query: 298 ALTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 A+T ID+N+ + T GG++EET NLEAA+E+ RQ+RLRD+GG+IV+DFIDM ++ Sbjct: 728 AMTVIDVNTGKFTGSGGNLEETVTRNNLEAAEEVIRQVRLRDIGGIIVVDFIDMVLESNR 787 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDN 416 V RL E + +DR + Q++ ++ GL++M+R+R+ L ES SG G + Sbjct: 788 DLVVRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRIGTGLAESLVSAGADLSGRGLLLPG 847 Query: 417 E----SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCV 472 S + R + + ++ + + V Sbjct: 848 SEEDGSKAHHGNRSSNNDGGNSRRDRKRRGDNKSSSKSNDSDGQ---SDTVANDASRSAV 904 Query: 473 IVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATF 532 + + ++S + S+ + + Sbjct: 905 AAIAKATLKKDEAESKEPGSSQDASVSDNASSSANTDSSKDSQGNEPSDSAGNGGSGRSR 964 Query: 533 AMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTE 592 + + + ++ PA K + E E Sbjct: 965 TRSNRRRSQAKSADSSDSAQDQSAQDTTVDETPAPEQPAQEQPAQAKPARAKKPEVPAAE 1024 Query: 593 QPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNRE 637 P + + RR + + +SE + S Sbjct: 1025 LPLMIGADSATKVAKAEPVKAAPRRKPAAKSEAKSETAQPSLPTS 1069 >UniRef50_P72656 Ribonuclease E homolog n=10 Tax=Cyanobacteria RepID=RNE_SYNY3 Length = 674 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 162/699 (23%), Positives = 283/699 (40%), Gaps = 28/699 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + ++ A + + A+ ++ +L + + Q+ +IY G + I PS++AAF++ Sbjct: 1 MPKQIVIAEKHQV--AAVFWKDQIQELVVSTGS--QQVGDIYLGLVDNILPSIDAAFINI 56 Query: 61 GA-ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G E++GF+ + ++ +I ++L Q V+VQ+ KE GNKG LT Sbjct: 57 GDTEKNGFIHVSDLGPVRLR-----RTAGSISELLSPQQRVLVQVMKEPTGNKGPRLTGN 111 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 IS+ G Y+VLMP +SRRI ++ ALA L P GMGL+VRT +A Sbjct: 112 ISMPGRYMVLMPYGRGVN-LSRRINREEERSRLRALAVLIKPPGMGLLVRTEAEDVPEDA 170 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + DL K WE +++ A +R AP L+ ++ + I R RD ++ I++D P ++ Sbjct: 171 IIEDLENLQKQWELVQQQAMTRSAPMLLDRDDDFIKRVLRDMYSSEVNRIVVDTPAGMKR 230 Query: 240 ARQHIAALGRPDFSSKIKL--YTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 +Q + + + + + + + ++++ + I A + V LPSGG I+I+ TE Sbjct: 231 IKQQLMNWDQGRLPEGVLIDCHRESLSILEYFRVNATIREALKPRVDLPSGGYIIIEPTE 290 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 ALT ID+NS T + ET TN EAA EIARQL+LR++GG+I+IDFIDM + Q Sbjct: 291 ALTVIDVNSGSFTHSANSRETVLWTNYEAATEIARQLKLRNIGGVIIIDFIDMDSHKDQL 350 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 + + D+AR QI+ ++ GL+E++R+R +L E CP C G G + + Sbjct: 351 QLLEHFNRCLETDKARPQIAQLTELGLVELTRKRQGQNLYELFGQPCPECGGLGHLVELP 410 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 E+ + + V++ +P + + A +++ + + Sbjct: 411 G---------EKGFVSLSPTAVNSSIPPRLVEKPILSPPVAKVNDLPKKEEAKISSPLDL 461 Query: 478 QMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 + E ++ P + + A P Sbjct: 462 LFHPNYQEQGDRDSNRRRRRRRGSEFSEKENIKSVGISRSKGPSPSPTKEKVTGTAPPRR 521 Query: 538 PPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPK 597 E V A A L +K ++ + Sbjct: 522 ERPSRRVEKTLVPVDVAMTTLEQDIYARMGISPL------IKTEYADQDPRSFMVSVVTA 575 Query: 598 AEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESR 657 A + + + ++G E +Q ET E Sbjct: 576 GAALEGNTNGSGSLVNAVITTVDNGDNGDNVPSDGLTIVSEVTAPTPVIEQPREETVEPE 635 Query: 658 QQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKA 696 Q T A + R+ ++ + Sbjct: 636 QVVLPQLDDETPAAPVAEESAPIETKKRPGRRRRRSSAE 674 >UniRef50_Q8DL99 Ribonuclease E n=3 Tax=Chroococcales RepID=Q8DL99_THEEB Length = 668 Score = 443 bits (1140), Expect = e-122, Method: Composition-based stats. Identities = 163/655 (24%), Positives = 252/655 (38%), Gaps = 17/655 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + +I A E A+ ++ +L + + H + +IY G + + P ++AAFV+ Sbjct: 1 MPKQIIIAE--EHRLAAVFAEDQIQELIVATGTH--QVGDIYLGVVENVLPGIDAAFVNL 56 Query: 61 GAE-RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G R+GF+ + ++ I ++L Q+V+VQ+ KE G KG LT Sbjct: 57 GDASRNGFIHVSDLGPLRLK-----RTAGAITELLAPQQKVLVQVMKEPTGTKGPRLTGN 111 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ISL G YLVLMP +SRRI + AL L P GMGL+VRT G S EA Sbjct: 112 ISLPGRYLVLMPYGRGVN-LSRRITNEAERHRLRALGILVKPAGMGLLVRTEAEGVSEEA 170 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + DL + WE I++ A + P L+ ++ + I + RD D+ I++D P ++ Sbjct: 171 ILEDLELLQRQWETIQQQAAASRPPQLLGRDDDFIQKVLRDVYSSDVNRIVVDTPDGVKR 230 Query: 240 ARQHIAALGRPDFSS-KIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 +QH+ I + IP+ ++++ + I A + V LPSGG I+I TEA Sbjct: 231 VKQHLKNWNVNRPVGVLIDYHQEPIPILDYFRVNAAIREALKPRVDLPSGGYIIIQPTEA 290 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 LT ID+NS T ET TN EAA EIARQLRLR++ G+I++DFIDM R Q Sbjct: 291 LTVIDVNSGSFTSSATSRETVLWTNCEAATEIARQLRLRNIAGVIIVDFIDMDSRRDQLL 350 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 + +A+R D+AR QI+ +S GL+E++R+R ++ E C C G G + Sbjct: 351 LLEHFSKALRADKARPQIAQLSELGLVELTRKRQGQNIYELFGRPCSACGGLGHLVHLPG 410 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPI--ASYLLNEKRSAVNAIETRQDGVRCVIVPN 476 I E + E + + + + + Q + Sbjct: 411 EPEDSPGEIVERSPIPRPPEPRRSLEPRTEPNGFASSSLETQLINHPDYQAVGGIRPRSS 470 Query: 477 DQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPD 536 P R P + E RP + A Sbjct: 471 RSSHPPTPRSPRRTPENGNGRKVVTTPPEAAPPPVVKVESRPVRPARPSRSEPAEVITVT 530 Query: 537 VPPAPTPAEPAAPVVAPA---PKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQ 593 + + + + E P E Sbjct: 531 MTDQEQAVYAEMGISPLVLYGEEVKNPRGTIVMVARPGQDPLPLPQKTGRPVSEGGPEEA 590 Query: 594 PAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQ 648 P E N ++ E + E Sbjct: 591 PETADELPSPEVSTMNVEPIPATGLLNTSESLKTSEPEVTTEAESVGEASTPEAS 645 >UniRef50_A8UTH4 Cytoplasmic axial filament protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UTH4_9AQUI Length = 466 Score = 443 bits (1138), Expect = e-122, Method: Composition-based stats. Identities = 130/453 (28%), Positives = 231/453 (50%), Gaps = 17/453 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M LI + + + L+ + + ++ +E G ++ +I+KG++ R SL+ AFVD Sbjct: 1 MDVRLIISASRNLVLTFLLKEKEISEIKVEKRGKKRLSGSIFKGRVKRFAKSLDGAFVDI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G + +LPLK + S + EG E++VQ+ +E +KGA +T I Sbjct: 61 GIGKEAYLPLKAYENTALEEDESCP-------LPEEGSEILVQMKREPIEDKGAKVTCRI 113 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 S+ G +LV +P + + +S +IE ++R + L L E G+IVRT+ + E L Sbjct: 114 SIPGKFLVYLPTSKKV-FVSSKIEDENRRAFFKELFERALDE-EGVIVRTSAEFATEEEL 171 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 +L W+ IK+ + S L+++E V+ RDY D+ EI++D+ ++ Sbjct: 172 LAELQKLRNTWKEIKERSASIKQ-GLVYEEVPAYVQLVRDYWN-DVSEIIVDDRELWSEL 229 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + + P+ K++ F Y ++ + F R V L +GG I+I+ TEA+T Sbjct: 230 LAELESYF-PELVGKVRYVKNISVFFKKYGLDKALTRLFARYVWLRNGGYIIIEETEAMT 288 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ID+NS +E+ A TNLEAA+EI RQ++LRD+GG+++IDFIDM +++ + Sbjct: 289 VIDVNSGSGCGDT-LEDNALQTNLEAAEEIVRQIKLRDIGGIVIIDFIDMKNKKNREKLV 347 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 R++E + +++ + I+ GLLE++R++ +PS+ CP C G G ++ E + Sbjct: 348 KRVKELFADEGSKVHVYGITHLGLLELTRKKETPSVTRLLSINCPYCKGKGYIKSPEVVL 407 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLN 453 I + I + + V + + N Sbjct: 408 YEIEKEINYF----KGRYLEVRVNPALKERVEN 436 >UniRef50_A8GXM7 Ribonuclease E n=15 Tax=cellular organisms RepID=A8GXM7_RICB8 Length = 693 Score = 442 bits (1137), Expect = e-122, Method: Composition-based stats. Identities = 179/553 (32%), Positives = 274/553 (49%), Gaps = 14/553 (2%) Query: 72 EIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMP 131 EI + N + + ++DV+R+ Q ++VQ+ KEERGNK AA TT++SLAG Y VLMP Sbjct: 151 EIIQSDKEENIPQYKQYKVQDVIRKNQILLVQVTKEERGNKCAAFTTYVSLAGKYCVLMP 210 Query: 132 NNPRAGGISRRIEG-DDRTELKEALASLELPEG--MGLIVRTAGVGKSAEALQWDLSFRL 188 N GISR+I D+R LK L + + +I+RTAG G S L+ D S+ Sbjct: 211 NKAAQNGISRKISNGDERKRLKNILNKVVNGDKSPYSVIIRTAGRGCSTLDLKKDYSYLS 270 Query: 189 KHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALG 248 + W I+K+ PAP IH+E ++I + RD ++ E++I + E A + + L Sbjct: 271 RLWNKIRKSTVKFPAPCFIHEEDSIIRKTIRDMCDHNVKEVIIYGQEAYEDAAKFMQDL- 329 Query: 249 RPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSAR 308 P +K+K + + P+F+ +Q+E Q+ +Q V LPSGG IVI+ TEAL +ID+NS R Sbjct: 330 LPSEMTKLKEHKSKTPIFTKFQVEEQLIKLYQPVVTLPSGGYIVINPTEALISIDVNSGR 389 Query: 309 ATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVR 368 +T +IEETA TNLEAA EIARQ++LRDL GLIV+DFIDM ++++ +E +E + Sbjct: 390 STSEKNIEETALKTNLEAAKEIARQVKLRDLSGLIVVDFIDMDETKNRKIIERSFKEFLS 449 Query: 369 QDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIE 428 +DRARIQ +IS+FGLLE SRQRL S E++ +C C+G G VR +ES ++ ILR IE Sbjct: 450 RDRARIQTGNISQFGLLEFSRQRLRFSFLETNSSICSHCNGKGVVRADESNAMLILRTIE 509 Query: 429 EEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLR 488 E ++ ++ V YLLN KR + IE + + +R + + Y + + Sbjct: 510 NEIFEDRIDIINVFANVSSVIYLLNNKRQEIKFIEEKYN-IRLNFYSDPNATSDSYSIEK 568 Query: 489 VRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAA 548 V+ ++ P + + E+P Sbjct: 569 VKLLKKNNNNL---------NAGKPVIQNHSADYTEEEPKKEQLRKNKHKWKTGNNNNVV 619 Query: 549 PVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDR 608 + K T++ ++ R Sbjct: 620 SEEKKKVPEIKEVKDQVVSVVKEEVEITDDGVVVEEKPLPKKTKRRYRNKKSNKNRPVAN 679 Query: 609 RKPRQNNRRDRNE 621 ++ +E Sbjct: 680 KESSVAEDSGGSE 692 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 34/88 (38%), Positives = 52/88 (59%), Gaps = 1/88 (1%) Query: 2 KRMLINATQQEELRVALV-DGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 K+++I+A E RV L+ + D++ ++ +Q K NIY K+TRIEPSL+A F++Y Sbjct: 3 KKIIIDANFSNETRVVLLGQSNNIEDIEFQTTRKQQNKGNIYLAKVTRIEPSLQAVFIEY 62 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRP 88 G ++ GFLP EI Y+ S P Sbjct: 63 GMDKSGFLPFSEIHPNYYNLPASEKNFP 90 >UniRef50_D1Y9V9 S1 RNA binding domain protein n=3 Tax=Propionibacterium acnes RepID=D1Y9V9_PROAC Length = 874 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 140/425 (32%), Positives = 235/425 (55%), Gaps = 12/425 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R +I + ++A+++ L + ++ NIY GK+ + PS+EAAF+D Sbjct: 427 VDRKMIVRQSDDYSQLAVLEDGVLVEHYVDRASATSSIGNIYLGKVQNVLPSMEAAFIDI 486 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + I+ VL+ G +V+VQ+ K+ G KGA LT+ I Sbjct: 487 GRGRNAVLYAGEVDWAKYGKEGE---DKRIEHVLKSGDQVLVQVTKDPVGAKGARLTSHI 543 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 S+ G ++V P GISR++ +R LK+ + + +P +IVRTA G + E L Sbjct: 544 SVPGRFVVYSPGG-HLSGISRKLADSERKRLKKIVEN-NIPSDASVIVRTAAEGATEEDL 601 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDN----PKV 236 D++ WE I++ + AP +++ E ++ VR RD D E++I Sbjct: 602 VRDINRLKVQWEVIERKVSNSKAPLMLYTEPDLTVRIIRDLFTADFSELVIAGNGGPDDA 661 Query: 237 LELARQHIAALGRPDFSSKIKLYTG-EIPLFSHYQIESQIESAFQREVRLPSGGSIVIDS 295 + + ++ + P+ +S++ + + F+ Y+I+ Q+ A +R+V LPSGGS+VID Sbjct: 662 YDTIKAYVDHVA-PEMASRLIHWEHTDKDPFAEYRIDEQVAKALERKVYLPSGGSLVIDR 720 Query: 296 TEALTAIDINSARATRG-GDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVR 354 TEA+T ID+N+ + T G++E T NLEAA+EI RQLRLRD+GG+IVIDFIDM Sbjct: 721 TEAMTVIDVNTGKFTGSAGNLEATVTANNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLPT 780 Query: 355 HQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVR 414 ++ + RL E + +DR R Q++ ++ GL++M+R+++ L E+ C C G G R Sbjct: 781 NRELLVRRLTECLGRDRTRHQVAEVTSLGLVQMTRKKIGTGLAEAFTEQCEACGGRGYRR 840 Query: 415 DNESL 419 ++ + Sbjct: 841 FDKPV 845 >UniRef50_C0XRI1 Ribonuclease E (Fragment) n=2 Tax=Corynebacterium RepID=C0XRI1_9CORY Length = 743 Score = 442 bits (1136), Expect = e-122, Method: Composition-based stats. Identities = 151/420 (35%), Positives = 240/420 (57%), Gaps = 16/420 (3%) Query: 10 QQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLP 69 +V +++ L + + S + NIY G++ + PS+EAAF+D G R+G L Sbjct: 248 HGTITQVGVLEDGVLAEHFVTSDQNASMIGNIYLGRVQNVLPSMEAAFIDIGQNRNGVLY 307 Query: 70 LKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129 E+ + + I+ L+ G +V+VQ+ K+ G+KGA LTT ISLAG YLV Sbjct: 308 AGEVDWKAAGLGGRSR---RIEQALKSGDQVMVQVTKDPVGHKGARLTTQISLAGRYLVY 364 Query: 130 MPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLK 189 +P R+ GISR++ +R LKE LA + +P G I+RTA G S EA+ D++ Sbjct: 365 VPGG-RSAGISRKLPAPERKRLKEILAKV-VPGKGGAIIRTAAEGVSEEAIAADVTRLHN 422 Query: 190 HWEAIKKAAESRP-----APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHI 244 WE +++ AE P +++E N++V+ RD +D ++++D + ++ Sbjct: 423 QWETLQEQAEREKSSKGAKPVTLYEEPNLLVKVVRDLFNEDFSKLIVDGKRPWNTVHAYV 482 Query: 245 AALGRPDFSSKIKLYT----GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 +++ PD ++ Y F Y+++ QI+ A R V LPSGG++VID TEA+T Sbjct: 483 SSVA-PDLEDRLVRYDRAAHDGQDAFEAYRVDEQIQKALSRTVWLPSGGTLVIDRTEAMT 541 Query: 301 AIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 ID+N+ + T GG +EET NLEAA+EI RQ+RLRD+GG+I++DFIDM +Q V Sbjct: 542 VIDVNTGKFTGSGGSLEETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMILPENQELV 601 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 RL+EA+ +DR R Q+S ++ GL++M+R+RL L E+ C C G G + ++ + Sbjct: 602 LRRLKEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLLETFSTPCECCGGRGIIVADDPV 661 >UniRef50_Q0FAK9 Ribonuclease, Rne/Rng family protein n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=Q0FAK9_9RHOB Length = 870 Score = 442 bits (1135), Expect = e-122, Method: Composition-based stats. Identities = 211/656 (32%), Positives = 334/656 (50%), Gaps = 6/656 (0%) Query: 70 LKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVL 129 + E R I++V++ Q +++Q+ KEERGNKGAALTT++SLAG Y VL Sbjct: 214 ADDDVEEEVRPRKPRPRRYKIQEVIKVRQILLIQVVKEERGNKGAALTTYLSLAGRYCVL 273 Query: 130 MPNNPRAGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRL 188 MPN R GGISR+I DR ++KE + L++P+G GLIVRTAG ++ + + D + + Sbjct: 274 MPNTARGGGISRKITNVQDRKKIKEITSELDVPKGAGLIVRTAGAKRNRDDILRDYEYLM 333 Query: 189 KHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALG 248 + W I+ AP I+ E ++I R+ RD DI EI+++ + E A+ ++ L Sbjct: 334 RQWTQIRDITLESIAPTQIYAEGDIIKRSIRDLYNNDIDEIIVEGERGFEAAKAYMTML- 392 Query: 249 RPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSAR 308 P ++K Y ++PL++ YQ+E+ + F V+L SGG IVI TEAL A+D+NS + Sbjct: 393 MPSHVKRVKQYKNKMPLYARYQVENYLGGMFNPTVQLKSGGYIVIGVTEALVAVDVNSGK 452 Query: 309 ATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVR 368 AT+ IE+TA TNLEAADE+ARQLRLRDL GLIVIDFIDM R+ AVE R+++ ++ Sbjct: 453 ATKESSIEKTALKTNLEAADEVARQLRLRDLAGLIVIDFIDMEERRNNIAVEKRMKDKLK 512 Query: 369 QDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIE 428 DRARIQ+ IS FGL+EMSRQRL P + E++ CP C GTG VR ++S +LSILR IE Sbjct: 513 SDRARIQVGRISGFGLMEMSRQRLRPGMLEATTKECPHCLGTGLVRSDDSQALSILREIE 572 Query: 429 EEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLR 488 EEA+++ T+E+ A VPV I++YLLN KR + IE++ + +I + M Y + + Sbjct: 573 EEAIRKRTKEIQATVPVGISNYLLNHKRENIALIESQY-AISIIIEASASMIGTDYELEK 631 Query: 489 VRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAA 548 + + +P E A + + L P +P Sbjct: 632 RKTSSRIIADVFDMPTAREMEAAANIDVTKSTEDAETSTNLDDDDKPKKRRRRRRRKPRK 691 Query: 549 PVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDR 608 +AP P + +L E+ + K + K + + Sbjct: 692 DEIAPDTSNEAEDVNQGDAPSS---DKSNIVSLEPAKEQPLKPKAVKSKRKPKIKDITEI 748 Query: 609 RKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKART 668 D + SE + + + + + + ++ + + KA+ Sbjct: 749 EINISEKPSDAKQSVVEISEEVKPKKRKRRTKAQIEADEAEAKKNKDLEKPKKSQPKAKK 808 Query: 669 ADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQ 724 + + + R+ +++ E+ + ++ + P + +R+ Sbjct: 809 SAGKLSSSGTRAEENKTKSLSKTKKSTVEAPEDVKIIPEDKSIGIEDEVPSKPKRR 864 Score = 90.7 bits (223), Expect = 2e-16, Method: Composition-based stats. Identities = 41/91 (45%), Positives = 56/91 (61%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLI+AT EE RV +V+G ++ + D ES Q NIY K+TR+EPSL+AAFVDYG Sbjct: 3 KKMLIDATHAEETRVVVVEGNKVDEFDFESLNKRQLSGNIYLAKVTRVEPSLQAAFVDYG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKD 92 RHGFL EI +Y+ + ++ Sbjct: 63 GNRHGFLSFAEIHPDYYQIPVADREALIAEE 93 >UniRef50_C4RPB5 Ribonuclease Rne/Rng n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RPB5_9ACTO Length = 1086 Score = 440 bits (1131), Expect = e-121, Method: Composition-based stats. Identities = 149/420 (35%), Positives = 243/420 (57%), Gaps = 7/420 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R++ + + ++A+++ L + + N+Y GK+ + PS+EAAFVD Sbjct: 535 VDRVMAVRQRGDRTQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQNVLPSMEAAFVDI 594 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + +I+ LR G V+VQ+ K+ G+KGA LT+ I Sbjct: 595 GRGRNAVLYAGEVNWDTTGLE---GRARSIEQALRSGDSVLVQVTKDPIGHKGARLTSHI 651 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +L+G +LV +PN A GISR++ +R L++ L L +P+G G+IVRTA G S + L Sbjct: 652 ALSGRHLVYVPNGN-ASGISRKLPDTERKRLRDVLKKL-VPDGAGVIVRTAAEGASEDEL 709 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 D+ WE I+ S AP L+++E ++++R RD +D E++I+ + + Sbjct: 710 ARDVKRLQAQWEDIQAKVASGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGDESYGMV 769 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 +++ + PD +++ + G +F+ Y+I+ QI R+V LPSGG +VID TEA+T Sbjct: 770 ESYLSHVS-PDLVDRVRRHVGTSDVFATYRIDEQILKGLDRKVFLPSGGHLVIDRTEAMT 828 Query: 301 AIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +D+N+ + T GG++EET NLEAA+EI RQLRLRD+GG++VIDFIDM ++ V Sbjct: 829 VVDVNTGKYTGAGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELV 888 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 RL E + +DR + Q++ I+ GL++M+R+R+ L E+ C C G G V E + Sbjct: 889 LRRLTECLGRDRTKHQVTEITSLGLVQMTRKRIGAGLLEAFSETCDCCKGRGVVIHTEPV 948 Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 56/385 (14%), Positives = 95/385 (24%), Gaps = 8/385 (2%) Query: 599 EAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQ 658 E +PE + DR T + A TA + + Sbjct: 19 ENEPEGGERTGSQPAGETADRTTDTGRAGGDTVTGTADLAAAESAAPAGGPTAAQGAAAE 78 Query: 659 QAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQP 718 + + R + P + + + + + + V E + Sbjct: 79 TPAASPRKRATRRRATPLNQPEQTEAPVEASTSAGSASAESPQAEVFAPVAGELEEAPKT 138 Query: 719 RRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAP 778 R++R+ E+ +A A E + + P A P Sbjct: 139 PRRRRKATTAKAVEEPIAATAAEESGAEVVPPVKVTRTRRRKATGPAAETPAAEPAAGVP 198 Query: 779 EQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVA------- 831 A P + +P V P P A Sbjct: 199 APVAAEVAPAGAPAETP-GTEATPAPAVVERPTVVEPTAASGPADQPTAGRTATGRSRRR 257 Query: 832 CASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEE 891 + E SG+V + + + E + A A V+ P Sbjct: 258 SSGAENRSGEVPPGVAVSGAAEPAADVTEPAEIIVPAEATPAEATAPAEAIEVAEPRTRR 317 Query: 892 VAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQ 951 + AP + V++A E+P + V +AEPV P+ Sbjct: 318 RRAALSAPTVLFMAPQPDEPPVARVVVSAPAEEEPVEEQPEPSRRRRRVRREAEPVETPE 377 Query: 952 EETADIEEVVETAEVVVAEPEVVAQ 976 E E E E E A Sbjct: 378 AEEEPFAETEEAEGGEDEEDEESAA 402 Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 52/366 (14%), Positives = 78/366 (21%), Gaps = 10/366 (2%) Query: 651 AETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQE 710 E ++ TAD R A E+ A + Q E Sbjct: 19 ENEPEGGERTGSQPAGETADRTTDTGRAGGDTVTGTADLAAAESAAPAGGPTAAQGAAAE 78 Query: 711 ERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPL 770 + R +R+ + EQ+ A + + AP Sbjct: 79 TPAASPRKRATRRRATPLNQPEQTEAPVEASTSAGSASAESPQAEVFAPVAGELEEAPKT 138 Query: 771 PVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTV 830 P + A + P + + +R+ P P Sbjct: 139 PRRRRKATTAKAVEEPIAATAAEESGAEVVPPVKVTRTRRRKATGPAAETPAAEPAAGVP 198 Query: 831 ACASPELASGKVWIRYPIVR--PQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPV 888 A + E+A P P VE E + Sbjct: 199 APVAAEVAPAGAPAETPGTEATPAPAVVERPTVVEPTAASGPADQPTAGRTATGRSRRRS 258 Query: 889 VEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVV 948 E P VA E V + + A A EVAE Sbjct: 259 SGAENRSGEVPPGVAVSGAAEPAADVTEPAEIIVPAEATPAEATAPAEAIEVAEPRTRRR 318 Query: 949 EPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATA 1008 + + + A VV+ A E EP A Sbjct: 319 RAALSAPTVLFMAPQPDEPPV--------ARVVVSAPAEEEPVEEQPEPSRRRRRVRREA 370 Query: 1009 PMTRAP 1014 P Sbjct: 371 EPVETP 376 Score = 48.8 bits (114), Expect = 0.001, Method: Composition-based stats. Identities = 48/358 (13%), Positives = 77/358 (21%), Gaps = 2/358 (0%) Query: 552 APAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKP 611 P + A + A +G + E AP + P Sbjct: 21 EPEGGERTGSQPAGETADRTTDTGRAGGDTVTGTADLAAAESAAPAGGPTAAQGAAAETP 80 Query: 612 RQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADE 671 + R+ RR T + E ++ E + A ++ + A E+A Sbjct: 81 AASPRKRATRRRATPLNQPEQTEAPVEASTSAGSASAESPQAEVFAPVAGELEEAPKTPR 140 Query: 672 QQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRY 731 ++ A +E+ A V V T + + P Sbjct: 141 RRRKATTAKAVEEPIAATAAEESGAEVVPPVKVTRTRRRKATGPAAETPAAEPAAGVPAP 200 Query: 732 EQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDN 791 + A T A E P TA R + Sbjct: 201 VAAEVAPAGAPAETPGTEATPAPAVVERPTVVEPTAASGPADQPTAGRTA--TGRSRRRS 258 Query: 792 GGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRP 851 G RS P + VSG + A R Sbjct: 259 SGAENRSGEVPPGVAVSGAAEPAADVTEPAEIIVPAEATPAEATAPAEAIEVAEPRTRRR 318 Query: 852 QDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEV 909 + V +A E + + AEP Sbjct: 319 RAALSAPTVLFMAPQPDEPPVARVVVSAPAEEEPVEEQPEPSRRRRRVRREAEPVETP 376 >UniRef50_A9KMH0 Ribonuclease, Rne/Rng family n=1 Tax=Clostridium phytofermentans ISDg RepID=A9KMH0_CLOPH Length = 404 Score = 439 bits (1128), Expect = e-121, Method: Composition-based stats. Identities = 114/405 (28%), Positives = 203/405 (50%), Gaps = 11/405 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M LI + + AL +G ++ ++++ NIY GK+ I ++ AAFV+ Sbjct: 1 MSGKLIVTKMDDNIVTALYEGNQMIQVNVDREEEVSSLGNIYIGKVKNIVKNINAAFVEI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 + +LPL ++ F D + G E++VQ+ KE+ K +TT I Sbjct: 61 SDRKMCYLPLADVVNPIFT-------HAKSSDKVNIGDELVVQVIKEDIKTKAPVVTTSI 113 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 + G Y+VLM + + GIS +I + + + +L S L E G ++RT V + Sbjct: 114 AFTGKYVVLM-HGTKTIGISSKIGSEQKRKRLRSLVSPFLGEQYGFVLRTNAVEAEDNLI 172 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 ++ K ++ I R L+++ + A RD +D+ I+ D+ + + Sbjct: 173 VEEIEQLKKQYDRILTYGIYRNRFSLLYKTLQPFLCAIRDGFAKDLEAIITDDLSLYDEI 232 Query: 241 RQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 ++++ R D K+ Y ++ L Y IE+++ A + +V LP GGS+VI TEAL Sbjct: 233 KEYLTEHQREDIG-KLTFYQDKLLALSKLYSIETKLSRALREKVWLPCGGSLVIQPTEAL 291 Query: 300 TAIDINSARAT-RGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 T ID+N+ +A + +++ET NLEAA+EIA Q+ LR+L G+I++DFIDM + Sbjct: 292 TVIDVNTGKAVSKKKNVQETFLKVNLEAAEEIAAQICLRNLSGIIIVDFIDMISEDAKTQ 351 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHV 403 + E +R+D + + ++ L+E++R+++ L E H Sbjct: 352 LLRVFDEYLRKDPIKTTLVDMTALNLVEITRKKVRKPLHEQMKHT 396 >UniRef50_P51211 Ribonuclease E homolog n=2 Tax=Porphyra RepID=RNE_PORPU Length = 511 Score = 438 bits (1126), Expect = e-121, Method: Composition-based stats. Identities = 128/474 (27%), Positives = 220/474 (46%), Gaps = 27/474 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M ++ + A++ ++ L + + ++IY G + +I + AAFVD Sbjct: 1 MTNTIVISCLHNI--AAILYCGQIQKLVV--ANAHYQVSDIYLGTVDKIFSGINAAFVDL 56 Query: 61 GAER-HGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G GF+ + + + NI ++L Q+++VQI KE NKG LT Sbjct: 57 GKNEYSGFIHISDT-----GPLKKKYYINNITNILTIRQKILVQIIKEPTLNKGPRLTAN 111 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 I+L+G Y+VLMP + +A ISR+I +D +ALA L P MGL+ R + +G E Sbjct: 112 ITLSGRYIVLMPFS-QAICISRKIYDEDERHYLKALAILIKPPTMGLLFRPSAIGIDEEI 170 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + +L+ + W I+K+A + AP L++++ +++ + RD+ + I+ID+ L+ Sbjct: 171 ILSELTNLKEQWYFIQKSAINNCAPVLLYKDEDIVKKVIRDFYDNNTKNIVIDSNLGLKQ 230 Query: 240 ARQHIAALGRP--DFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 +I ++LY+ + ++I I A +V L GG + I++ E Sbjct: 231 LNYYINTWQCNFSSTIPSLQLYSSNKCILDTFRINQAISRALIPKVDLILGGYMFIETLE 290 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 A T ID+NS ET TN AA EIA QL++R++ G+I+IDFIDM R Q Sbjct: 291 AFTIIDVNSGSFNNSTSARETVLKTNCSAATEIAYQLKIRNIAGVIIIDFIDMESQRDQL 350 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 + + + D A+ QI +S GL+E++R+R SL E N+ Sbjct: 351 QLLEHFDKELSLDDAKPQIVQLSELGLVELTRRRKGKSLYELV--------------SND 396 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRC 471 S +E+ + + + + S+L +E + + R Sbjct: 397 SNYFHFFIQLEQLDSIKPSSYKSKRLSSSVKSWLFSEIDMINRVFFKKSNLYRL 450 >UniRef50_C7NH23 RNAse G n=1 Tax=Kytococcus sedentarius DSM 20547 RepID=C7NH23_KYTSD Length = 959 Score = 438 bits (1125), Expect = e-121, Method: Composition-based stats. Identities = 183/656 (27%), Positives = 287/656 (43%), Gaps = 11/656 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R ++ E +V +++ L + I+ N+Y G++ + PS+EAAFVD Sbjct: 314 VHRTMVVRESAEYTQVGVLEDGVLVEHYIDRQQQTTMVGNVYLGRVQNVLPSMEAAFVDI 373 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+G L E+ + + I+ L+ GQ V+VQ+ K+ G+KGA LT I Sbjct: 374 GKGRNGVLYAGEVNWDAAG--LPKGEQKRIESALQPGQPVLVQVTKDPIGHKGARLTGQI 431 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLV +P N GISR++ +R LK+ L + +P G+IVRTA G + L Sbjct: 432 SLPGRYLVYVPGNT-TTGISRKLPDTERARLKKILKDV-VPADAGVIVRTAAEGAAEAEL 489 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 + D+ WE I A AP L+H E ++ VR RD +D ++++ P E Sbjct: 490 RADVERLTTQWERIAAAQAKGSAPTLVHGEPDLTVRVIRDVFNEDFTKLVVSGPTAWESV 549 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 +I A+ PD + K++ + GE +F H++IE QI A R+V LPSGGS++ D TEA+T Sbjct: 550 TSYIDAVA-PDLTPKLERWEGEQDVFEHHRIEEQIAKAMDRKVWLPSGGSLIFDRTEAMT 608 Query: 301 AIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +D+N+ + GG++EET N+EAA+EI RQLRLRD+GG+IV+DFIDM ++ V Sbjct: 609 VVDVNTGKFVGSGGNLEETVTKNNIEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLV 668 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 RL E + +DR + Q++ ++ GL++M+R+R+ L E C C G G V + + Sbjct: 669 VRRLVECLARDRTKHQVAEVTSLGLVQMTRKRVGSGLVEVYGETCEHCDGHGLVVQDAPV 728 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 ++ + + RS+ ++ V + D+ Sbjct: 729 AVR-----GGGSGGGRRSGRQSGKEGRQQGEAQAAPRSSGPSVAQIARAVHAAALKGDEE 783 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPP 539 P + ++A +E+ E+ R EQPA A A + Sbjct: 784 GLPEEQAAGGTDESAPQAPAAAAEGATDDAAEGVAEQAPREQTRAEQPATAPKAAAETAS 843 Query: 540 APTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAE 599 AP V A P A + A + E P Sbjct: 844 PAQATSGDAPAVTGRIGRRSAAPVESAPQVGDEESSSYVGAPVADAPEPAPAPARRSSRR 903 Query: 600 AKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRE 655 + + E S R R A Q + Sbjct: 904 RAASTGAAAPSVTVAPQPAPTTSVAGGAGVAEKSTITRRTPRRRVVAPQGDGASPA 959 >UniRef50_C8XF15 Ribonuclease, Rne/Rng family n=1 Tax=Nakamurella multipartita DSM 44233 RepID=C8XF15_NAKMY Length = 1080 Score = 437 bits (1124), Expect = e-120, Method: Composition-based stats. Identities = 181/691 (26%), Positives = 293/691 (42%), Gaps = 14/691 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R++ + E +VAL++ L + + G + +++ GK+ + PS+EAAFVD Sbjct: 366 VDRVMAVRQRGELAQVALLEDGILVEHFVSQTGADSLIGSVFLGKVQNVLPSMEAAFVDI 425 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ + E+ + A I+ L G ++ Q+ K+ G+KGA LTT I Sbjct: 426 GRGRNAVIYAGEVNWDAAGLGGKAR---RIESALSSGDTILAQVSKDPVGHKGARLTTQI 482 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G +LV +P A GISR++ +R LK L + +PE G+I+RTA G S E L Sbjct: 483 SLPGRFLVYVPGG-GATGISRKLPDTERKRLKAILDRI-VPEDAGVIIRTAAEGVSEEEL 540 Query: 181 QWDLSFRLKHWEAIKKAAE-SRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPK---- 235 D+ WE I + A+ AP L++ E +++ RD DI +++D Sbjct: 541 ARDVERLKAQWEEISRRAQAKGSAPTLLYAEPGTLIKVVRDLFNSDINRLVVDGDAGNDT 600 Query: 236 VLELARQHIAALGRPDFSSKIKLYT-GEIPLFSHYQIESQIESAFQREVRLPSGGSIVID 294 V ++ A+ P+ + ++ + +F++Y+I+ QI A +R+V LPSGGS+VID Sbjct: 601 VWGPVSDYVNAVA-PELADRLVRWDHDGQDVFANYRIDEQIAKALERKVHLPSGGSLVID 659 Query: 295 STEALTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPV 353 TEA+T +D+N+ + T GG++EET NLEAA+EI RQLRLRD+GG+IV+DFIDM Sbjct: 660 RTEAMTVVDVNTGKYTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLE 719 Query: 354 RHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 ++ V RL EA+ +DR R Q++ ++ GL++M+R+R+ L E+ CP C G G V Sbjct: 720 SNRELVMRRLTEALGRDRTRHQVAEVTSLGLVQMTRKRMGTGLVEAFSEPCPHCGGRGIV 779 Query: 414 RDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVI 473 L+ + A + + ++ R + A Sbjct: 780 LHEMPLATAGQESAPAPARGKGRRRGRDGGKPAPVEEIVIP-RVELAAGRRPDPRGPKPP 838 Query: 474 VPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFA 533 H + + + EA + + + A Sbjct: 839 PSVFGAHDSHDPRDADTGEHDEQPIESSGRRDDREADLVMAVADAAAIAAEAADEAGEPV 898 Query: 534 MPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQ 593 P A + A P +PA+ G + + E Sbjct: 899 ATGEPAAGGVDDSVPDAPTSPESAEPVASGSPAEAGDVVMTTAPAAEAPASAAEPVREPV 958 Query: 594 PAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAET 653 AP+ P + + RR S D A Sbjct: 959 AAPEPVPAPPAAAEPPRSAPRRRRAAGRPAGAPSTTAAAVDIVVSPVAEAAGNGHAAATE 1018 Query: 654 RESRQQAEVTEKARTADEQQAPRRERSRRRN 684 +E R + E A ++A R Sbjct: 1019 QEPRTGGYLVEDAPVRTTRRAASRPAGPSAP 1049 >UniRef50_Q0SR50 Ribonuclease, Rne/Rng family n=8 Tax=Clostridium perfringens RepID=Q0SR50_CLOPS Length = 480 Score = 437 bits (1123), Expect = e-120, Method: Composition-based stats. Identities = 144/508 (28%), Positives = 243/508 (47%), Gaps = 29/508 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M+ + + + LRVA+ + L + IE E + IYKG + R+ P +++AF+D Sbjct: 1 MRDIYVERREN-LLRVAIKENNLLSECYIEEESLEPVQGEIYKGIVKRVVPGIKSAFIDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G + ++ L E ++ L++G +IV++ KE+ G+KGA +T+ I Sbjct: 60 GYSKQAYMILGEDEKD-----------------LKQGDGIIVEVLKEQFGSKGAKVTSKI 102 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SLAG Y VL + ISR+IE + KE SL P +G+ VRT S + Sbjct: 103 SLAGRYCVLETSRNDI-SISRKIENLEFK--KELENSLIKPSELGVTVRTKAQSASIFEI 159 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 Q ++ K+++ + + + P I + ++I + RD + I++D+ + E Sbjct: 160 QEEIEELYKNYKEVIREGKFSLNPKKIMGKGDLINKIIRDDIDAYTSSIIVDSIEDYERI 219 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 + I+ K+ LY LF +Y IE +I S V L GG IVI+ TEA+ Sbjct: 220 KDSISN----SEYLKVTLYDDARSLFDYYGIEKEILSLRNNRVNLNCGGDIVIEKTEAMY 275 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ID+NS + T + E+TA+ TN AA EIARQ+++R+LGG+I++DFIDM +++ + Sbjct: 276 VIDVNSGKNTNHKNKEKTAYETNKNAAIEIARQIKIRNLGGIILVDFIDMYSQENKKKIL 335 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 L++ + D R +I + GL++++R R S+ E C C+G G ++ Sbjct: 336 KILKDEFKSDSQRAKIFPFTELGLVQITRYRKGKSIYEYIEENCLACNGHGKRLKLSYIN 395 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 L L+ E LK+N + + I S + R + + I N Q Sbjct: 396 L----LLRNEILKKNGEGKIKDFHIEINSIYEKDIRGNIFEFLKEIGALDLNIYLNFQES 451 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEE 508 Y V + + ++ L K E+ Sbjct: 452 KDFYKVEPLIFKNQIESVKEYLVKNIEK 479 >UniRef50_B8EPB2 Ribonuclease, Rne/Rng family n=1 Tax=Methylocella silvestris BL2 RepID=B8EPB2_METSB Length = 1080 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 222/754 (29%), Positives = 338/754 (44%), Gaps = 11/754 (1%) Query: 71 KEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLM 130 + E + I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLM Sbjct: 327 GDAMEEVPVRPQRYRRQYKIQEVIKRRQVLLVQVVKEERGNKGAALTTYLSLAGRYSVLM 386 Query: 131 PNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLK 189 PN R GGISR+I DR LK LE+PEGMG+I+RTAG ++ ++ D + L+ Sbjct: 387 PNTARGGGISRKITDSTDRQRLKSIAQELEVPEGMGVILRTAGASRTKPEVKRDFEYLLR 446 Query: 190 HWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGR 249 WE +++ AP L+++E ++I RA RD +DI +I++ K AR + L Sbjct: 447 MWETVRETTLKSSAPTLVYEEGSLIKRAIRDLFNKDIDDIVVAGDKGYREARDFMR-LLM 505 Query: 250 PDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARA 309 P + ++ Y P+FS +E+Q+++ F +V L SGG IVI+ TEAL AID+NS R+ Sbjct: 506 PSHVNSVQPYRDAQPIFSKSDVETQLDAMFLNQVTLKSGGYIVINQTEALVAIDVNSGRS 565 Query: 310 TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQ 369 TR +IE+TA TNLEAADE+ARQLRLRDL GLIV+DFIDM R+ RAVE RL++A++ Sbjct: 566 TREHNIEDTALRTNLEAADEVARQLRLRDLAGLIVVDFIDMEEGRNNRAVERRLKDALKN 625 Query: 370 DRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEE 429 DRARIQ+ IS FGLLEMSRQR+ + E S +CP CSG+G +R S++L +LR+ E+ Sbjct: 626 DRARIQVGRISHFGLLEMSRQRIRTGVLEGSTELCPHCSGSGILRSTASIALHVLRVAED 685 Query: 430 EALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRV 489 LK + ++ +A Y+LNEKR+ + +E R GV I +D + YH + Sbjct: 686 ALLKSASHDLIIRTRSAVALYILNEKRAHLRDLERRF-GVAVSIEVDDSLIGSVYHAMER 744 Query: 490 RKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAP 549 + L +A E A + A D P + A Sbjct: 745 GEPASGGHEPIELAAPEPAQIAARDFVEDAAPGFAPEDEAPEGAAEDGDEDQEPGDANAR 804 Query: 550 VVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPA-------PKAEAKP 602 + A + + + + P A Sbjct: 805 GEGESEGDAENRRKRRRRRRRGRGGDREGSGIAANAPQPSDDALGVIAQYGGLPGAIPSV 864 Query: 603 ERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEV 662 + + + + N E + E + + R +R + Sbjct: 865 DVIAEAFENADYQPSEVNAETAPELAADESGEVVETSFEREAAPAKPARRPRRARSREAA 924 Query: 663 TEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQ 722 E+A +A+ + + + EA + R P Sbjct: 925 PEEAESAEPVTDLASTGAAPSGVEGEEDDAEAAQPARRSRRTPRPRAPRRAASELPAPAS 984 Query: 723 RQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQE 782 + +++ A A ++ +A P P + P ++T Sbjct: 985 EAEAATLDLQEAAAAPAPLSEPTLPFESAPPAATAVEPPAPSAFE-PATAASETEASTAS 1043 Query: 783 ENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYR 816 + G S R R +R + Sbjct: 1044 SIVGSDEPAPGTESNPPESDRPKRSGWWQRAKAT 1077 Score = 87.3 bits (214), Expect = 3e-15, Method: Composition-based stats. Identities = 39/92 (42%), Positives = 55/92 (59%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +MLI+A+ EE RV ++ G R+ + D ES +Q + NIY K+TR+EPSL+AAFVDYG Sbjct: 3 NKMLIDASHPEETRVVVLRGNRVEEFDFESASKKQLRGNIYLAKVTRVEPSLQAAFVDYG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKDV 93 RHGFL EI +Y+ ++ Sbjct: 63 GNRHGFLAFSEIHPDYYQIPVVDRQALIEEEA 94 Score = 53.4 bits (126), Expect = 4e-05, Method: Composition-based stats. Identities = 34/323 (10%), Positives = 70/323 (21%) Query: 634 DNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQE 693 + E + E + + V + A + + ++D+ Sbjct: 743 ERGEPASGGHEPIELAAPEPAQIAARDFVEDAAPGFAPEDEAPEGAAEDGDEDQEPGDAN 802 Query: 694 AKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEP 753 A+ E + + R R + Q + V A P Sbjct: 803 ARGEGESEGDAENRRKRRRRRRRGRGGDREGSGIAANAPQPSDDALGVIAQYGGLPGAIP 862 Query: 754 IVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRR 813 V P V A+TAPE + + + + + P + R Sbjct: 863 SVDVIAEAFENADYQPSEVNAETAPELAADESGEVVETSFEREAAPAKPARRPRRARSRE 922 Query: 814 RYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTE 873 +E + L A+P G+ + + + + Sbjct: 923 AAPEEAESAEPVTDLASTGAAPSGVEGEEDDAEAAQPARRSRRTPRPRAPRRAASELPAP 982 Query: 874 VPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESD 933 A A + + P T + + Sbjct: 983 ASEAEAATLDLQEAAAAPAPLSEPTLPFESAPPAATAVEPPAPSAFEPATAASETEASTA 1042 Query: 934 VAVAQEVAEQAEPVVEPQEETAD 956 ++ P E Sbjct: 1043 SSIVGSDEPAPGTESNPPESDRP 1065 Score = 49.5 bits (116), Expect = 7e-04, Method: Composition-based stats. Identities = 34/324 (10%), Positives = 68/324 (20%), Gaps = 13/324 (4%) Query: 676 RRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSV 735 R + + A V++ P ++ + Sbjct: 743 ERGEPASGGHEPIELAAPEPAQIAARDFVEDAAPGFAPEDEAPEGAAEDGDEDQEPGDAN 802 Query: 736 AEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMP 795 A + E + Q + + G +P Sbjct: 803 ARGEGESEGDAENRRKRRRRRRRGRGGDREGSGIAANAPQPSDDALGVIAQYGGLPGAIP 862 Query: 796 RRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQ 855 + Q + + V S E + R + + Sbjct: 863 SVDVIAEAFENADYQPSEVNAETAPELAADESGEVVETSFEREAAPAKPARRPRRARSRE 922 Query: 856 VEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVE---- 911 + + V + + + +E + A + P+ E Sbjct: 923 AAPEEAESAEPVTDLASTGAAPSGVEGEEDDAEAAQPARRSRRTPRPRAPRRAASELPAP 982 Query: 912 ---------TTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVE 962 A A +P + ES A V A EP ++ E Sbjct: 983 ASEAEAATLDLQEAAAAPAPLSEPTLPFESAPPAATAVEPPAPSAFEPATAASETEASTA 1042 Query: 963 TAEVVVAEPEVVAQPAAPVVAEVA 986 ++ V EP + P Sbjct: 1043 SSIVGSDEPAPGTESNPPESDRPK 1066 Score = 44.1 bits (102), Expect = 0.028, Method: Composition-based stats. Identities = 39/334 (11%), Positives = 67/334 (20%), Gaps = 5/334 (1%) Query: 711 ERVRPVQPRRKQRQLNQKVRYEQSVAE-EAVVAPVVEETVAAEPIVQEAPAPRTELVKVP 769 ER P + +L + + + AP A E E Sbjct: 743 ERGEPASGGHEPIELAAPEPAQIAARDFVEDAAPGFAPEDEAPEGAAEDGDEDQEPGDAN 802 Query: 770 LPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPT--QSPMP 827 ++ + + R G S +P Sbjct: 803 ARGEGESEGDAENRRKRRRRRRRGRGGDREGSGIAANAPQPSDDALGVIAQYGGLPGAIP 862 Query: 828 LTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEV--HVQPMVTEVPVAAAIEPVVS 885 A + ++ +E E E + + Sbjct: 863 SVDVIAEAFENADYQPSEVNAETAPELAADESGEVVETSFEREAAPAKPARRPRRARSRE 922 Query: 886 APVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAE 945 A E + + P VE + AA + + A Sbjct: 923 AAPEEAESAEPVTDLASTGAAPSGVEGEEDDAEAAQPARRSRRTPRPRAPRRAASELPAP 982 Query: 946 PVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNH 1005 E A + + P A E A A T Sbjct: 983 ASEAEAATLDLQEAAAAPAPLSEPTLPFESAPPAATAVEPPAPSAFEPATAASETEASTA 1042 Query: 1006 ATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKG 1039 ++ + PAP P +R + K Sbjct: 1043 SSIVGSDEPAPGTESNPPESDRPKRSGWWQRAKA 1076 >UniRef50_B2HMG4 Ribonuclease E Rne n=28 Tax=Mycobacterium RepID=B2HMG4_MYCMM Length = 1017 Score = 436 bits (1120), Expect = e-120, Method: Composition-based stats. Identities = 143/420 (34%), Positives = 239/420 (56%), Gaps = 20/420 (4%) Query: 14 LRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEI 73 ++A+++ + + + S NIY G + + PS+EAAFVD G R+G L E+ Sbjct: 362 TQIAVLEDGIVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 421 Query: 74 AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 + + I+ L+ G ++VQ+ K+ G+KGA LTT +SLAG YLV +P Sbjct: 422 NWDAAGLGGADR---KIEQALKPGDYIVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGA 478 Query: 134 PRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEA 193 GISR++ +R LKE L + +P G+I+RTA G + ++ D++ + W Sbjct: 479 SST-GISRKLPDTERQRLKEILREV-VPSDAGVIIRTASEGVKEDDIRADVTRLQERWNQ 536 Query: 194 IKKAA-----ESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALG 248 I+ A ++ A +++E +V+V+ RD +D +++ + ++++++ Sbjct: 537 IEAKAVEIKQKAAGAAVALYEEPDVLVKVIRDLFNEDFAGLVVSGDDAWDTINEYVSSVA 596 Query: 249 RPDFSSKIKLYTGEI--------PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 PD SK+ Y + +F+ ++I+ Q+ A R+V LPSGG++VID TEA+T Sbjct: 597 -PDLVSKLSKYEPAVGSEGQVGPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMT 655 Query: 301 AIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +D+N+ + T GG++E+T NLEAA+EI RQLRLRD+GG++VIDFIDM ++ V Sbjct: 656 VVDVNTGKFTGSGGNLEQTVTKNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLV 715 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 RL EA+ +DR R Q+S ++ GL++++R+RL L E+ CP CSG G + + + Sbjct: 716 LRRLTEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTSCPHCSGRGILLHADPV 775 >UniRef50_Q3AF57 Ribonuclease, Rne/Rng family n=1 Tax=Carboxydothermus hydrogenoformans Z-2901 RepID=Q3AF57_CARHZ Length = 392 Score = 435 bits (1117), Expect = e-120, Method: Composition-based stats. Identities = 131/413 (31%), Positives = 212/413 (51%), Gaps = 29/413 (7%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + L+ Q E A++ + L + + + +IY GK+ ++ P L+AAFV+ Sbjct: 1 MTKTLVFHRQPEYDLAAVMVDGSPFSLFAKRRDEQTQINDIYLGKVEKVVPGLQAAFVNL 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++G+LPL EI ++ G V+V++ K KGA L+T I Sbjct: 61 GLAKNGYLPLDEIN-------------------VKPGDVVLVRVVKNPTAQKGAKLSTVI 101 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G LV P GISR++ D R L +L LP G IVRT E L Sbjct: 102 SLPGRNLVYFPQKEM-KGISRKLTEDKREYYHRVLENLNLP--GGFIVRTLAGE--EEDL 156 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 + + W+ I + +++ AP L+++E ++ R+ L +D + +D+ ++LE Sbjct: 157 LQEAKRLYEEWQGILERSKTAQAPALLYKEDDLFTWCLRELLDKDFTALYVDDFELLE-- 214 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 I R F + + + + +E + V L +GG +VI+ TEALT Sbjct: 215 ---IGQKFRERFRVLLPPIYKSFNVMEEFNLIRTMEKLTRERVWLKNGGILVIEKTEALT 271 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 AID+NS + T D++ETAF NLEAA EIA+Q+RLR++GG+IV+DFI + + Sbjct: 272 AIDVNSGKFTGKKDLKETAFKINLEAAREIAKQIRLRNIGGIIVVDFISLLEEERWEEIL 331 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 + E +D+A+++I+ + GL+E++RQ++ S+GE H C C GTG + Sbjct: 332 RVMEEEFLRDKAKVKITGKTPSGLVEIARQKIGLSIGELFTHECSVCQGTGRI 384 >UniRef50_D2RC82 S1 RNA binding domain protein n=8 Tax=Bifidobacteriaceae RepID=D2RC82_GARVA Length = 1093 Score = 434 bits (1115), Expect = e-119, Method: Composition-based stats. Identities = 152/582 (26%), Positives = 265/582 (45%), Gaps = 14/582 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 ++R+++ + ++++++ L + + NIY G+I + PS+EAAFVD Sbjct: 518 VERLMVVRERDRHTQISVIEDNILVEHYVSDIQEVATVGNIYLGRIQNVLPSMEAAFVDI 577 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+G L E+ + I+ + G V+VQ+ K+ G+KGA LT+ + Sbjct: 578 GQARNGVLYAGEVNWDMARLEGQPR---RIELAFKSGDPVLVQVTKDPIGHKGARLTSQV 634 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LAG +LVL+P+ G+SR++ +R+ L+ ++ + P+ MG+I+RTA G S E++ Sbjct: 635 TLAGRFLVLVPSGGMT-GVSRKLSDRERSRLRAIVSKIA-PKDMGVIIRTAADGASEESI 692 Query: 181 QWDLSFRLKHWEAI---KKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 + DL +K WE I ++ P L+ E +V +R RD D +++++ V Sbjct: 693 EKDLDSLVKQWERIEAKREEYLHGKRPKLLQGEPDVAIRVVRDIFNDDFQKLIVEGEGVR 752 Query: 238 ELARQHIAALGRPDFSSKIKLYT----GEIPLFSHYQIESQIESAFQREVRLPSGGSIVI 293 + +++ + PD SK++ + +F +QI+SQ+ +R+V LP+GGSIVI Sbjct: 753 QRIDEYLEMMA-PDLRSKVEYWDPAEHEGKDVFDKWQIDSQLRKGMERQVYLPAGGSIVI 811 Query: 294 DSTEALTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTP 352 D TEA+T ID+N+ R G +EET NLEA++EIARQLRLRD+GG+++ID++DM Sbjct: 812 DRTEAMTTIDVNTGRFIGRGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVM 871 Query: 353 VRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGT 412 ++ V RL E + +DR + Q++ ++ GL++M+R+R+ L E+ CP C G G Sbjct: 872 PANRDLVLRRLLECLARDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSEECPTCKGRGF 931 Query: 413 VRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCV 472 + +E S + + + K+ +A + Sbjct: 932 ILHDEPTVSSEYADPYALKGGDPFVKTNKYGHGSATEQPAPVKQQGSSAEVRAKLARIAA 991 Query: 473 IVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATF 532 + + S + E L Sbjct: 992 ASVITDAAHKSEEETQYSNFLNSDEESVSSKADETSEVVDAGETAETSEVDKTSEELVEN 1051 Query: 533 AMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRF 574 + D P + A Q S Sbjct: 1052 NLEDTTQEIAEYTAEQPTQETMQETAQDNTQEIMQETTESDD 1093 >UniRef50_B1LBB5 Ribonuclease, Rne/Rng family n=6 Tax=Thermotogaceae RepID=B1LBB5_THESQ Length = 459 Score = 433 bits (1114), Expect = e-119, Method: Composition-based stats. Identities = 136/450 (30%), Positives = 226/450 (50%), Gaps = 20/450 (4%) Query: 16 VALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAR 75 A++D L ++ + E IY G+I +I P LEAAFV G R+ FL L EI Sbjct: 3 YAVMDDGELEEVFFDEI--ETIAGKIYLGRIEKIVPGLEAAFVKIGKGRNAFLKLSEINE 60 Query: 76 EYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPR 135 Y ++EGQ+++VQ+ K+ G KG +T I +A ++V+ P + Sbjct: 61 AYRKTVLKGQE-------VKEGQKILVQVKKDASGKKGPQVTPQIGIADRFVVIFPF-KK 112 Query: 136 AGGISRRIEG-DDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAI 194 G+SR+IE +R L+ SL G+G+I+RTA G E + + L+ W + Sbjct: 113 VIGVSRKIEDASERRRLRTIAFSLRKKYGVGVIMRTAAEGVDEEEIIKNFERALEKWNQV 172 Query: 195 KKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSS 254 + P L+++E + + + ++ + I +++ ++ +LE ++++ L + Sbjct: 173 LQKFRRSRKPKLLYEE-DPVEQIIKEKVNSKIDKLIYNDRSLLETLQKYLQNLPKKPEIE 231 Query: 255 KIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGD 314 + E LF + + +++ R V L SGG+IVID TEALT ID+NS T + Sbjct: 232 YV-----EGDLFEKFSVYERLKKLLSRTVPLKSGGNIVIDRTEALTVIDVNSESYTDAEN 286 Query: 315 IEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARI 374 EE A TN+EA +EI RQL LR++GG++VIDFI + + +R +E ++D RI Sbjct: 287 QEELALKTNMEAIEEIVRQLILRNIGGIVVIDFIKQKDPKSYEKLLSRFKEVAKRDGTRI 346 Query: 375 QISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKE 434 +I + GLLE++R+R + L CP CSGTG V + L I +++ + Sbjct: 347 EIFGFTNLGLLEITRKRTTRPLDTLLFTRCPVCSGTGKVLSQKILLKRIREDLKKL---K 403 Query: 435 NTQEVHAIVPVPIASYLLNEKRSAVNAIET 464 + +EV V ++ Y E + Sbjct: 404 DFEEVTLKVHPNMSGYFKREDIKKLQKEFK 433 >UniRef50_C5RGP2 Ribonuclease, Rne/Rng family n=1 Tax=Clostridium cellulovorans 743B RepID=C5RGP2_CLOCL Length = 475 Score = 433 bits (1113), Expect = e-119, Method: Composition-based stats. Identities = 135/501 (26%), Positives = 233/501 (46%), Gaps = 31/501 (6%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + I + LR+A+ D ++L IE E IY G + I P+++ AF+D Sbjct: 1 MNEIFIEKDKPY-LRIAIKDHEKLLACYIEEETEEAVPGQIYLGIVKNIVPAIKGAFIDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G + F+ L L++G +V++ +E K A +T+ I Sbjct: 60 GKAKDAFMHLDNNRD------------------LKKGDYFLVEVLREATELKSANVTSLI 101 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDR-TELKEALASLELPEGMGLIVRTAGVGKSAEA 179 ++ G+Y+V+ P +A ISR+I E+KE L + G+ VR++ Sbjct: 102 TIPGTYVVVNPM-EKALKISRKISNSKFINEVKEQLKDV---STYGITVRSSAENVDINI 157 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 ++ ++ + I + P LI+ + + R RDY+ I++D+ K +L Sbjct: 158 IREEVQALNIVVDKIIAKGKYSLKPQLIYDDGGALGRILRDYINDGTKRIIVDDIKNYDL 217 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 +++I L S+++ ++ +F Y IE +I + ++V L SGG I+I+ TEAL Sbjct: 218 VKENIEKL---HSSAELIMHEESRGIFDCYSIEKEILALRHKKVVLKSGGYIIIEKTEAL 274 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +ID+NS ++T I +TAF TNLEAA+EIARQ+ LR+L G+IVIDFI+M + + V Sbjct: 275 YSIDVNSGKSTGEVAISKTAFKTNLEAAEEIARQIILRNLSGIIVIDFINMKDKKEKTEV 334 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 L A ++D + I + L++++R++ +G C C G G + L Sbjct: 335 IKILEAAFKKDNNKTTIYPFTDVNLVQITRKKRGKDIGSFLEESCKHCGGEGARLKWDYL 394 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 L LI+ + +K Q + + I S +E + + T +G C++ Sbjct: 395 KL----LIKNQLIKLKGQHITKEFVITIDSKYKSEVQKKLTEFITFIEGHDCLLYLLYLD 450 Query: 480 ETPHYHVLRVRKGEETPTLSY 500 Y V V + L Sbjct: 451 NFNSYKVEPVIFDSQRKNLQE 471 >UniRef50_A5CEM7 Ribonuclease E n=2 Tax=Orientia tsutsugamushi RepID=A5CEM7_ORITB Length = 675 Score = 432 bits (1110), Expect = e-119, Method: Composition-based stats. Identities = 164/525 (31%), Positives = 267/525 (50%), Gaps = 10/525 (1%) Query: 69 PLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLV 128 P+ + + H + I+DV+ GQ V+VQ KE RGNK A+ TT+ISL+G Y + Sbjct: 146 PVSKQNSQEIAEFLPPHKQQEIQDVISSGQIVLVQATKESRGNKNASFTTYISLSGKYCI 205 Query: 129 LMPNNPRAGGISRRIEG-DDRTELKEALASL--ELPEGMGLIVRTAGVGKSAEALQWDLS 185 L PN GISRRI +DR +LK + +L ++ + +I+RTAG ++A ++ D + Sbjct: 206 LTPNLSNHSGISRRITNSEDRKQLKTIVGNLISKITKTSSVIIRTAGSRRTAYEIKKDFN 265 Query: 186 FRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIA 245 + LK W I A+ P I+ E+++I + D + E++I + A + + Sbjct: 266 YLLKLWNEIINTAKQAKPPAFIYVENDIIRKTILDIYNISVQEMIIQGKAAYDYAVKFMN 325 Query: 246 ALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDIN 305 A+ P KIK + IP+F+ Y +E Q+ + ++ V LPSGG IVI+ TEAL AID+N Sbjct: 326 AI-LPSEVHKIKEHKSTIPIFAQYNLEEQLATLYKPIVTLPSGGYIVINPTEALIAIDVN 384 Query: 306 SARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLRE 365 S + T +IEETA TNLEAA EI+ Q++LR+L GLI IDFI MT ++ + +E ++ Sbjct: 385 SGKDTSEQNIEETAVKTNLEAAKEISHQIKLRNLSGLITIDFICMTDSKNHKLIEKSFKK 444 Query: 366 AVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILR 425 + +D+A+IQ+ I+ FG+L++SRQRL PS ES+ +C CSG G VR ES ++ ILR Sbjct: 445 YLAKDKAKIQVDSINSFGVLQLSRQRLRPSFLESNSVICSHCSGKGIVRAEESNAMIILR 504 Query: 426 LIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYH 485 IE E + ++ + +Y+LN KR+ + IE + + V+ + Q + + Sbjct: 505 TIENEIHTSKSNIINVYAHLHSVTYILNNKRTEIADIEKKYN-VQLKFYNDFQSTSDSFS 563 Query: 486 VLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAE 545 + +V T + + A L + E A + + + + Sbjct: 564 IEKVTLSASTTKSALTEQPVVTSAKLLENIENPASQAISNTNISGSKILSIKSNKRRARK 623 Query: 546 PA-----APVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGG 585 + + + P ++ +K Sbjct: 624 QTHNLDLSAEQSVQQISKPVNDKKDNASNNKNQPTRPIKRRTKPS 668 Score = 93.1 bits (229), Expect = 6e-17, Method: Composition-based stats. Identities = 41/110 (37%), Positives = 61/110 (55%), Gaps = 10/110 (9%) Query: 2 KRMLINATQQEELRVALVDGQ-RLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 KR+L++A+ E RVAL+D R+ +++ E+ K NIY IT+IEPSL+AAF+DY Sbjct: 3 KRILVDASYPNETRVALIDNNCRIAEIEYETASKHLIKGNIYLATITKIEPSLQAAFIDY 62 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERG 110 + GFLP EI +Y+ N+ + L +V+I EE Sbjct: 63 SNGKSGFLPFSEIHPDYYN---------NVTNSLPFDTVPLVEITSEEIK 103 >UniRef50_D2PUT1 Ribonuclease, Rne/Rng family n=1 Tax=Kribbella flavida DSM 17836 RepID=D2PUT1_9ACTO Length = 1119 Score = 431 bits (1108), Expect = e-119, Method: Composition-based stats. Identities = 166/612 (27%), Positives = 291/612 (47%), Gaps = 27/612 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 ++R ++ + + ++A+ + L + + N+Y G++ + PS+EAAF+D Sbjct: 528 VERAMVIRARGDLTQIAVSEDNVLVEHYVAQEEQVSLIGNVYLGRVQNVLPSMEAAFIDI 587 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ I+ VL+ GQ V+VQ+ K+ G+KGA LT I Sbjct: 588 GKGRNAVLYAGEVDWNTLGGGNGPR---KIESVLKSGQAVLVQVTKDPIGHKGARLTNQI 644 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G Y+V +P GGISR++ +R+ LK L + +P+ G+IVRTA G + E L Sbjct: 645 SLPGRYVVYVPRG-GNGGISRKLPDTERSRLKGILKDI-VPDEAGVIVRTAAEGATEEEL 702 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 D+S +WE I K ++S AP L+H E ++++R RD +D +++I + Sbjct: 703 TADVSRLQAYWEDIDKKSKSGQAPQLLHGEPDLLIRVVRDLFTEDFAKLVISGDDAFDQV 762 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++++A+ P + ++ +TG+ +F++++I+ QI+ A R+V LPSGGS++ID TEA+T Sbjct: 763 SEYVSAVA-PHLAERVAKWTGDGDVFANFRIDEQIKKALDRKVWLPSGGSLIIDRTEAMT 821 Query: 301 AIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +D+N+ + T GG++EET NLEAA+EI RQLRLRD+GG+IVIDFIDM ++ V Sbjct: 822 VVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLV 881 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 RL E + +DR + Q++ ++ GL++M+R+R+ L E+ C C G G + +E Sbjct: 882 LRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRIGTGLLEAFGENCDHCGGRGLILHDEPK 941 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 + A ++N + +G + + Sbjct: 942 ESRRRQDGRGGAEQKNGHD--------------------HKNGTGDGEGKKGSRRNRGKG 981 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPP 539 H + + L ++ + + + +PA A D Sbjct: 982 RRDDEHTETPEPVQHNSDAAQRLAQIAAATVNGNAGNGHGTSEPATEPATEAPAAEDRGN 1041 Query: 540 APTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAE 599 P + A T A A+P + G+ ++ ++ + Sbjct: 1042 GPADRTDGSAGSGAEAGADAGTGEATAEPTDAAEPNGSSRSSRRRRSSRSRSKSAGDEGG 1101 Query: 600 AKPERQQDRRKP 611 + P+ + Sbjct: 1102 SAPDSGGEAPVE 1113 Score = 52.6 bits (124), Expect = 9e-05, Method: Composition-based stats. Identities = 47/376 (12%), Positives = 89/376 (23%), Gaps = 1/376 (0%) Query: 602 PERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAE 661 + R + + + R R + + + Sbjct: 3 DNEPNTTEAADVAATDQPARKAGARKTAAKKTAVKSSTPRKRTVKKAAASAAEPAEAAVV 62 Query: 662 VTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRK 721 T+ A + +++ R + ++A A +++V++T ++ + P Sbjct: 63 STQSDAEAADPAPAPVKKTAARKTAAKAPAKKAAAKTAAKRTVKKTARKATGQDPLPEDT 122 Query: 722 QRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQ 781 + + + EA P + T AP P PL A ++ Sbjct: 123 AAEATPETPADGGPVVEAAPEPAKKTTRRRTTKKSAAPQPDLLTPDSPLTDGP-VADAEE 181 Query: 782 EENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGK 841 +E+ S V+ + S + + + E + Sbjct: 182 DEDAQSEDTAAETDDTSSAGDDQASVTTSAPKSITTTGTSYVSLGGPSSSTPTAEETPEE 241 Query: 842 VWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQ 901 + V Q V V P A + A Sbjct: 242 TPEAPTRRSRRRAPVAAPIFQAPVEVAPQAASTSPVEATPEAEAPRKRTRSRRGAAADAA 301 Query: 902 VAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVV 961 E T AA EQP ++ E A EP E A Sbjct: 302 PVADAQAADELTDGPGTAADTDEQPSTSRRRRSRRGRDAEEVAADRAEPVLEAARELSAD 361 Query: 962 ETAEVVVAEPEVVAQP 977 + V Sbjct: 362 DATVADVDVEAEADDS 377 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 29/283 (10%), Positives = 51/283 (18%) Query: 764 ELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQ 823 + A +Q + +PR V Sbjct: 3 DNEPNTTEAADVAATDQPARKAGARKTAAKKTAVKSSTPRKRTVKKAAASAAEPAEAAVV 62 Query: 824 SPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPV 883 S A K R + + + + + E Sbjct: 63 STQSDAEAADPAPAPVKKTAARKTAAKAPAKKAAAKTAAKRTVKKTARKATGQDPLPEDT 122 Query: 884 VSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQ 943 + E A EP + + AA + + + E Sbjct: 123 AAEATPETPADGGPVVEAAPEPAKKTTRRRTTKKSAAPQPDLLTPDSPLTDGPVADAEED 182 Query: 944 AEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEH 1003 + E D + V + + E E Sbjct: 183 EDAQSEDTAAETDDTSSAGDDQASVTTSAPKSITTTGTSYVSLGGPSSSTPTAEETPEET 242 Query: 1004 NHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTA 1046 A +R AP P + + A A Sbjct: 243 PEAPTRRSRRRAPVAAPIFQAPVEVAPQAASTSPVEATPEAEA 285 >UniRef50_A9VIS0 Ribonuclease, Rne/Rng family n=78 Tax=Bacillus RepID=A9VIS0_BACWK Length = 469 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 129/467 (27%), Positives = 232/467 (49%), Gaps = 26/467 (5%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 + L E RVA+ + Q++ +L + ++ +IY G+I R + AAFV+ G Sbjct: 9 KTLYINYTGSEKRVAIEEKQKIVELLWKRNEEQEIVGHIYVGRIVRTIAGMNAAFVNIGL 68 Query: 63 ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISL 122 E+H +L ++ Y + EGQ ++VQ+ KE KG LT I Sbjct: 69 EKHAYLSFDDVPSSYR---------------IHEGQAILVQVVKEAIDTKGPKLTAKIEF 113 Query: 123 AGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQW 182 G Y+V MP +SR+I+ + R + L +E+ G I R+A + + +Q Sbjct: 114 TGKYVVYMPY-DEMRAVSRKIKNNKRRQ---QLLGIEVEGTGGYIFRSASEKGTIDEIQA 169 Query: 183 DLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQ 242 ++ + +E +K+ + AP L+HQ + + R F++ + I +I++D +++ + Sbjct: 170 EMQGLQQLYEELKRKEDQGKAPLLLHQPATFLDRVFQENPIETIEKIVVDTRSIVKELEE 229 Query: 243 HIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAI 302 + ++ Y + +F+H+ I+ +IE A Q+ V LP+G ++++ E +T I Sbjct: 230 KVG-------KERVAFYNEKSSMFNHFGIDREIEKALQKIVWLPNGAYLIVEQMETMTVI 282 Query: 303 DINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENR 362 D+N+ + T ++++T F TN AA+EIARQLRLRD+GG+I+IDFI+M + V R Sbjct: 283 DVNTGKFTGKQNLQDTVFRTNEMAAEEIARQLRLRDIGGMILIDFINMKRREDKEKVRER 342 Query: 363 LREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLS 422 L A++ DR ++ + G+LEM+R+R SL + C C TG V NE+++ Sbjct: 343 LMIALQDDRTYTRVLGFTELGILEMTRKRKKHSLRDVLLEECAPCKATGYVISNETIAYE 402 Query: 423 ILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGV 469 + R + E+ + A + E + + +D + Sbjct: 403 LERELITYGNIEDEAVLIAASKKVQKHFSQKELQKNIPFEIYFKDDI 449 >UniRef50_A8L1W0 Ribonuclease, Rne/Rng family n=25 Tax=Actinobacteridae RepID=A8L1W0_FRASN Length = 1427 Score = 430 bits (1106), Expect = e-118, Method: Composition-based stats. Identities = 172/659 (26%), Positives = 280/659 (42%), Gaps = 8/659 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 ++R +I + ++A+++ L + + N+Y G++ + S+EAAFVD Sbjct: 776 VERRMIVRHNGDRTQIAVLEDGVLVEHFVTRASSASYAGNVYLGRVQNVLASMEAAFVDI 835 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + + I+ VL+ GQ V+VQ+ K+ G+KGA LT+ + Sbjct: 836 GKGRNAVLYAGEVNYDASGLDGRPR---KIEQVLKSGQSVLVQVSKDPIGHKGARLTSQV 892 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLV +P+ A GISR++ +R LK L + PE G+IVRTA G S L Sbjct: 893 SLPGRYLVYVPDGQNA-GISRKLPDTERARLKSILKKI-TPENGGVIVRTAAEGASEAEL 950 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 + D+ + WE I++ A+ AP L++ E +++VR RD +D E+++ Sbjct: 951 ERDIERLVAQWEDIQRKAQKASAPSLLYGEPDLVVRVIRDIFNEDFTELVVQGSHEAATV 1010 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++ + PD +++ Y G +F+ ++++ Q+ A R+V LPSGGS+VID TEA+T Sbjct: 1011 EGYVDTVA-PDLRDRVRRYVGTGDVFAEHRVDEQLAKALDRKVWLPSGGSLVIDRTEAMT 1069 Query: 301 AIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 ID+N+ + T GG++EET NLEAA+EI RQLRLRD+GG+IVIDFIDM ++ V Sbjct: 1070 VIDVNTGKFTGKGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELV 1129 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 RL E + +DR R Q++ ++ GL++M+R+R+ L E+ C C+G G + +S Sbjct: 1130 LRRLTECLGRDRTRHQVAEVTSLGLVQMTRKRVGQGLLEAYSEPCAHCNGRGVLVHLDS- 1188 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 + S + A + + T+ G V Sbjct: 1189 AHSRDAQSRDGAQPREAASSASQPAAEAPAQAAGTSTGRRARHATKPAGPALVAAAVSSA 1248 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPP 539 + G + S + E PA A Sbjct: 1249 VDGAHVSSDDASGSVNGSASAESTDSSGSVGSAGVSGPAEAVALGEHPAAQAGASLLDAV 1308 Query: 540 APTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAE 599 AP A A V A + + + G G + + Sbjct: 1309 APRAARIAVTVGAGSDQGTESNGVDSNGVSGGPGANGTGSGGAEGTTVDGESRPGSGGIP 1368 Query: 600 AKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQ 658 + R + AQ + + Sbjct: 1369 VFANTDDPDSVLHSGTNGAGTPAGAEKPARARRRRASRPVSKPTDTAQPIPVPSEATST 1427 Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 50/467 (10%), Positives = 87/467 (18%), Gaps = 12/467 (2%) Query: 550 VVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRR 609 + P+ L A A T E AP++ Q Sbjct: 8 EDQATRSEVTPSETVPSDNTLADTAAPATAAPEPVTPATAVAESAAPESVTAETAPQRPT 67 Query: 610 KPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTA 669 + R+ R + +D + ++ Sbjct: 68 RRRRAAGRPAGPPPEEAGPPAAAADGETAVDAADSATGAGAGAVSSTLPVSDGAAPDAAV 127 Query: 670 DEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKV 729 +A + + + + + + Sbjct: 128 PLVEAGAEPAPEAAPAKPARRARTTRPRRASREVSEAVPDTTATPAPSDTTSPAAGSSDT 187 Query: 730 RYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNR 789 + A E + A+ + V + TA + R Sbjct: 188 TSLDTRAPETTSSATAAPEAGADNVPGSPGQVAKGDVTASDALADTTASGEAAPAVTKPR 247 Query: 790 DNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIV 849 ++ P PT +P + A AS + V Sbjct: 248 RTRARRAATKVEPAAETG------------TPTGAPGSESAASASSSVGEPAVGQTPAAS 295 Query: 850 RPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEV 909 P + T VAA A A+ + Sbjct: 296 APAPAAAPDSVADAATPPAVAATSQVVAATSPAPEPAIDETVDPLAEPVDELPADATADA 355 Query: 910 VETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVA 969 T AA T+ P + +A A A Sbjct: 356 DAGTSAAGTGAAATDAPGAQPAVASSPEPVIAATVADTAAVTGAGTTGTTEATPAAGPEA 415 Query: 970 EPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAP 1016 P V + V + APAP Sbjct: 416 VAGTETAPGPEAVGAPEPPRAERTSRRRTRAVAPTWTSGAEAPAPAP 462 Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 55/548 (10%), Positives = 101/548 (18%), Gaps = 1/548 (0%) Query: 472 VIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALAT 531 I+ + + V + E + E A + Sbjct: 5 QIIEDQATRSEVTPSETVPSDNTLADTAAPATAAPEPVTPATAVAESAAPESVTAETAPQ 64 Query: 532 FAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPT 591 A PA P P AA A A GA+ + + P Sbjct: 65 RPTRRRRAAGRPAGPPPEEAGPPAAAADGETAVDAADSATGAGAGAVSSTLPVSDGAAPD 124 Query: 592 EQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTA 651 + R RR +R D + + + Sbjct: 125 AAVPLVEAGAEPAPEAAPAKPARRARTTRPRRASREVSEAVPDTTATPAPSDTTSPAAGS 184 Query: 652 ETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEE 711 S + +A + + AL S + Sbjct: 185 SDTTSLDTRAPETTSSATAAPEAGADNVPGSPGQVAKGDVTASDALADTTASGEAAPAVT 244 Query: 712 RVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLP 771 + R + RR ++ + + EP V + PA Sbjct: 245 KPRRTRARRAATKVEPAAETGTPTGAPGSESAASASSSVGEPAVGQTPAASAPAPAAAPD 304 Query: 772 VVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVA 831 VA A + P + + + Sbjct: 305 SVADAATPPAVAATSQVVAATS-PAPEPAIDETVDPLAEPVDELPADATADADAGTSAAG 363 Query: 832 CASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEE 891 + + + T AA V+ Sbjct: 364 TGAAATDAPGAQPAVASSPEPVIAATVADTAAVTGAGTTGTTEATPAAGPEAVAGTETAP 423 Query: 892 VAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQ 951 V AP + T + E P + + + VA EP Sbjct: 424 GPEAVGAPEPPRAERTSRRRTRAVAPTWTSGAEAPAPAPVTRQSARRPVAMITFQQPEPA 483 Query: 952 EETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMT 1011 + + + A + + + Sbjct: 484 VVDPWPRRRRDADDAPAEPAVTGRGGLTGAGLDDVAPADEIVDAADDAVAYDTAEFGEAL 543 Query: 1012 RAPAPEYV 1019 + E Sbjct: 544 ETESSEQA 551 Score = 43.4 bits (100), Expect = 0.055, Method: Composition-based stats. Identities = 47/349 (13%), Positives = 69/349 (19%), Gaps = 6/349 (1%) Query: 716 VQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQ 775 + + + S + A PA P V A+ Sbjct: 1 MPEDQIIEDQATRSEVTPSETVPSDNTLADTAAPATAAPEPVTPATAVAESAAPESVTAE 60 Query: 776 TAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASP 835 TAP++ G P P + T+ + Sbjct: 61 TAPQRPTRRRRAAGRPAGPPPEEAGPPAAAADGETAVDAADSATGAGAGAVSSTLPVSDG 120 Query: 836 ELASGKVW-----IRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVE 890 V R V+E P S Sbjct: 121 AAPDAAVPLVEAGAEPAPEAAPAKPARRARTTRPRRASREVSEAVPDTTATPAPSDTTSP 180 Query: 891 EVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEP 950 + P+ T PE A V P + + DV + +A+ Sbjct: 181 AAGSSDTTSLDTRAPETTSSATAAPEAGADNVPGSPGQVAKGDVTASDALADTTASGEAA 240 Query: 951 QEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPM 1010 T A V EP +A + + EP V + Sbjct: 241 PAVTKPRRTRARRAATKV-EPAAETGTPTGAPGSESAASASSSVGEPAVGQTPAASAPAP 299 Query: 1011 TRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQP 1059 AP P A T A P P Sbjct: 300 AAAPDSVADAATPPAVAATSQVVAATSPAPEPAIDETVDPLAEPVDELP 348 >UniRef50_C0D9K4 Putative uncharacterized protein n=2 Tax=Clostridium RepID=C0D9K4_9CLOT Length = 400 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 113/404 (27%), Positives = 195/404 (48%), Gaps = 14/404 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + L+ ++++ A+ G++ L +E NIY GK+ ++ ++ AAFV+ Sbjct: 1 MDK-LVITRWRDKVLTAVFSGRKPLALTLEPEQGGSLLNNIYIGKVQKVVKNISAAFVEI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R G+LPL+ + + L G E+I+Q++K+ K +T + Sbjct: 60 GGGRVGYLPLEGTCPRVLNRPGAKN--------LAPGDELIIQVEKDAVKTKAPVVTCRL 111 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEG---MGLIVRTAGVGKSA 177 S AG Y VL P SR + + ++ L G GLIVRT Sbjct: 112 SFAGRYCVLTAGKPGVNFSSRLTDQSFKRRVRPVLEEAVRARGHEACGLIVRTNAGEAGE 171 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 E L +L+ +E+++ R +++ + + RD L + +L D V Sbjct: 172 EQLLAELAVLFDQYESVQNQGNHRVCYSCLYRSLPGYMASVRDSLGGSLEAVLTDQADVY 231 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDST 296 E + ++A + D K+ Y + L + Y ++ +E A + V L SGG +VI+ T Sbjct: 232 EELKHYLALNQQKDL-EKLSFYDDPLLSLGALYSLDKVMEEALGKRVWLKSGGYLVIEPT 290 Query: 297 EALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 EA+ ID+N+ + + ++ET NLEAA EIA Q+RLR+L G+I++DFIDM P ++ Sbjct: 291 EAMVVIDVNTGKYSGKKTLQETILKINLEAAVEIAHQIRLRNLSGIILVDFIDMEPGENR 350 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESS 400 + L EAV D + + +++ L+EM+R+++ L E Sbjct: 351 EILLKALSEAVSADPVKTAVVDMTKLNLVEMTRKKVRRPLHEQV 394 >UniRef50_C3WHH5 Ribonuclease G n=4 Tax=Fusobacterium RepID=C3WHH5_9FUSO Length = 459 Score = 429 bits (1103), Expect = e-118, Method: Composition-based stats. Identities = 139/433 (32%), Positives = 223/433 (51%), Gaps = 23/433 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + LI + E ++AL++ +L ++ IE ++ NIYKGKI I E FVD Sbjct: 1 MSKCLILSKNTYETKLALLEDDKLEEIYIEREKEKEISGNIYKGKIIDILNKGEIIFVDI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G E++ FL N + NI D L IVQ++ E R KGA LT Sbjct: 61 GLEKNAFLSF---------ENKKNIPKFNIFDSL------IVQVETEARDGKGARLTLDY 105 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDR-TELKEALASLELPEGMGLIVRTAGVGKSAEA 179 S+ G LVL+PN+ + IS++IE + +LK+ +++ GLI+RT V KS EA Sbjct: 106 SINGENLVLLPNS-KNLSISKKIENLETIKKLKDIFLNIDK----GLILRTKSVEKSPEA 160 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 L + I+K + + L++ ++++ +A L +DI E +ID+ Sbjct: 161 LLEEYKKLEAINNQIQKDFKEKNT-TLLYDNNSILKKAL-TLLDEDIDEFIIDDEDSFNK 218 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + + R K K Y + +FS+Y++++QIE A R+V L SG SIVI+ TEAL Sbjct: 219 IKNTLEENKRNYLLKKFKKYFKDEDIFSYYKLDTQIERALDRKVYLESGASIVIEKTEAL 278 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +ID+N+ + T + FNTNLEA EIARQ++LR+L G+I+IDFID+ + ++ + Sbjct: 279 VSIDVNTGQNTGNQSSQNLIFNTNLEACKEIARQIKLRNLAGIIIIDFIDLKKISDRKKI 338 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 L+ +++DR I S GL++ +R+R L C C GT + + + Sbjct: 339 LEELKRYLKKDRMEINSLDFSHLGLVQFTRKRQGKELSFYYREKCHYCEGTSYLLSKDRI 398 Query: 420 SLSILRLIEEEAL 432 L++ + + Sbjct: 399 ILNLFAELNSQIK 411 >UniRef50_A0R152 Ribonuclease, Rne/Rng family protein n=9 Tax=Corynebacterineae RepID=A0R152_MYCS2 Length = 1037 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 154/530 (29%), Positives = 249/530 (46%), Gaps = 19/530 (3%) Query: 14 LRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEI 73 ++A+++ + + + S NIY G + + PS+EAAFVD G R+G L E+ Sbjct: 402 TQIAVLEDGVVVEHFVTSAASASLVGNIYLGIVQNVLPSMEAAFVDIGRGRNGVLYAGEV 461 Query: 74 AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 E I+ L+ G V+VQ+ K+ G+KGA LTT +SLAG YLV +P Sbjct: 462 NWEAAGL---GGQNRKIEQALKPGDYVVVQVSKDPVGHKGARLTTQVSLAGRYLVYVPGA 518 Query: 134 PRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEA 193 GISR++ +R LKE L + +P G+I+RTA G E ++ D+ K W Sbjct: 519 SST-GISRKLPDTERQRLKEILREV-VPSDAGVIIRTASEGVKEEDIRSDVERLQKRWSE 576 Query: 194 IKKAA-----ESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALG 248 I+ A + A +++E +V+V+ RD +D +++ + ++ A+ Sbjct: 577 IEAKAAEVTEKKAGAAVALYEEPDVLVKVIRDLFNEDFSSLIVSGDEAWNTINSYVEAVA 636 Query: 249 RPDFSSKIKLYT----GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDI 304 PD ++ Y +F+ ++I+ Q+ A R+V LPSGG++VID TEA+T +D+ Sbjct: 637 -PDLMPRLTKYEPAGPDAPDVFAVHRIDEQLAKAMDRKVWLPSGGTLVIDRTEAMTVVDV 695 Query: 305 NSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL 363 N+ + T GG++E+T NLEAA+EI RQLRLRD+GG++VIDFIDM ++ V RL Sbjct: 696 NTGKFTGSGGNLEQTVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRDLVLRRL 755 Query: 364 REAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSI 423 EA+ +DR R Q+S ++ GL++++R+RL L E+ C C G G V + + + Sbjct: 756 TEALARDRTRHQVSEVTSLGLVQLTRKRLGTGLVEAFSTACTHCGGRGIVLHGDPIDSAS 815 Query: 424 LRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPH 483 + + V + G + M + Sbjct: 816 SNGGRKSDSSGGGGSGGGRRGKRGKKGAARTEEVHVAKVPDHTPGEHPMF---KAMAAAN 872 Query: 484 YHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFA 533 E+ E +E A+ + A A Sbjct: 873 GKHEGDEDHEDHEDHETAEDTTAAEVRDDTRDEHDADERAHVVTAAVGAA 922 >UniRef50_A5ZQK1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=A5ZQK1_9FIRM Length = 396 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 126/402 (31%), Positives = 205/402 (50%), Gaps = 13/402 (3%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 ML+N A+V Q++ +L +E G + NIY G++ I +++AAFV Sbjct: 1 MLLNEVPC--TVCAIVQDQKVIELRLEPSGKKNTLNNIYVGQVENIAANIQAAFVRLSDS 58 Query: 64 RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLA 123 +G+LPL + + LR G +++VQI++E K ALT ++ + Sbjct: 59 VNGYLPLNQCTNAIYTDG------RKTDQPLRPGDQLLVQINREAMKGKLPALTANLNFS 112 Query: 124 GSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLE-LPE-GMGLIVRTAGVGKSAEALQ 181 G YLVL N + G S ++ ++ + L + L LPE G+I RT S E Sbjct: 113 GKYLVLTTGNRKI-GFSNKLSKEESSLLNKWLEEERSLPEREYGIIARTNAAEASKEEFF 171 Query: 182 WDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELAR 241 +L K +E + +R L+++ + A RD +D+ EI+ D P++ E Sbjct: 172 HELEMLKKQYEKVAVHGRNRTCYSLLYEAEPFYLAAVRDVYTRDLDEIVTDIPEIHEKIF 231 Query: 242 QHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 +++ PD +KLY ++ PL+ Y +E I+ ++ L SGG +VI TEA Sbjct: 232 AYLSEFQ-PDKLEILKLYQDKLLPLYKLYSLEGAIDEVCHEKIWLKSGGFLVIQQTEAFV 290 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 +ID+NS + T EET NLEAA EIARQ+RLR+L G+I++DFI+M HQ + Sbjct: 291 SIDVNSGKYTGKKKAEETYRKINLEAAAEIARQIRLRNLSGIILVDFINMENPDHQDELF 350 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHH 402 + L++ +R+D + + I+ +LEM+RQ++ L E Sbjct: 351 HVLQKYLRKDPVKCKAIDITPLHILEMTRQKVRRPLIEDLRE 392 >UniRef50_C4LJU7 Ribonuclease E n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LJU7_CORK4 Length = 1258 Score = 428 bits (1100), Expect = e-118, Method: Composition-based stats. Identities = 181/825 (21%), Positives = 334/825 (40%), Gaps = 53/825 (6%) Query: 14 LRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEI 73 +VA+++ +L + + S NIY G++ + S+EAAFVD G +R+G + +I Sbjct: 433 TQVAIMEDDQLVEHFVTSERTRTLVGNIYLGRVQNVLASMEAAFVDIGTDRNGVIYSGDI 492 Query: 74 AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 + + I+ L+ G ++VQ+ K+ G+KG LT+ ISLAG YLV +P Sbjct: 493 DWRHTRHT---GRQRKIEKALKPGDPILVQVTKDSVGHKGPRLTSHISLAGRYLVYVPEG 549 Query: 134 PRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEA 193 RA G+SR++ +R LK+A++ + LP+ G I+RTA G E + D+ + W+ Sbjct: 550 -RAHGVSRKLPEPERKRLKKAVSGI-LPDEGGAIIRTAAEGVDTEDIARDVRRQQNVWDT 607 Query: 194 IKKAAESRP------------------------------APFLIHQESNVIVRAFRDYLR 223 I + A+ P +H+E N++V+ RD Sbjct: 608 ILEKADELRTLPGSQASSGKGSGKKNSKGGKKGSKPHFDGPQTLHEEPNLLVKVVRDLFN 667 Query: 224 QDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYT----GEIPLFSHYQIESQIESAF 279 +D E+++D + + +I + PD K+ Y F H+ I+ Q++ A Sbjct: 668 EDFDELIVDGGRSWSMVSSYIHRIA-PDLEEKLSKYERQDHDGQDAFGHWGIDKQLKQAL 726 Query: 280 QREVRLPSGGSIVIDSTEALTAIDINSARATRG-GDIEETAFNTNLEAADEIARQLRLRD 338 R V LPSGG++VI+ TEA+T ID+N+ R T G +EET NLEAADEI RQ+RLRD Sbjct: 727 DRVVFLPSGGTLVIEKTEAMTVIDVNTGRFTGSSGSLEETVTRNNLEAADEIVRQMRLRD 786 Query: 339 LGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGE 398 +GG+IV+DFIDM +Q V RL EA+ +DR R Q+ ++ GL++++R+RL L E Sbjct: 787 IGGMIVVDFIDMVLEENQELVLRRLSEALAKDRTRHQLGEVTSLGLVQITRKRLGKGLVE 846 Query: 399 SSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSA 458 + C C G G + ++ + +L +++ +++ + V + Y ++ Sbjct: 847 TFSTPCSECHGRGFIVHDDPI---LLSSTDDDESDDDSAALQDNVDNDLPEYSFDDDTDD 903 Query: 459 VNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEF 518 + + + + + + ++ + Sbjct: 904 HADDTSSDSTSGDSKNDRSKGGRSGGGRSKKDHAGKGGSGKQGHSEKQGDSEEATTRRRS 963 Query: 519 AERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGAL 578 E LA PD P A + A A+ G Sbjct: 964 IEEIAAAAVILADDEDPDEPSGADYLPAAQDSRSGGDDADNASAGDNGSSGDKDGRPRRR 1023 Query: 579 KALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREE 638 + + E+ +A + N R+E + + ++ Sbjct: 1024 RRRKTTRSSRSQHEEQV---KADHTESDGAKTNPPENATKRDEETAHHPDADADKGSGDK 1080 Query: 639 NRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQ------Q 692 R ++Q ++ A R + Q + +++ + + + D + + Sbjct: 1081 TTRGKKQRGRRHATRRSASQAKKAASSSQSKSRNEDDSHAKDEHQTKDASRTKSRSKDSG 1140 Query: 693 EAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAE 752 ++ + + ++S + + ++Q + + R + V P E + Sbjct: 1141 DSSSRSRGKKSSSADTSSQHEETYEEAQRQFDRSPRRRRATRGNSRSDVPPEKENYSDGK 1200 Query: 753 PIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRR 797 + K A+ E ++ D+ + Sbjct: 1201 TGKTGRGSSNASDQKQSDKSSAENRSEHADKRENDSHSGSSARKN 1245 >UniRef50_Q2JW46 Ribonuclease, Rne/Rng family n=4 Tax=Synechococcus RepID=Q2JW46_SYNJA Length = 711 Score = 428 bits (1099), Expect = e-118, Method: Composition-based stats. Identities = 169/714 (23%), Positives = 276/714 (38%), Gaps = 16/714 (2%) Query: 1 MKRMLINATQQEELRVA-LVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 M R ++ E+ RVA + ++ +L + S + ++Y G + + PS++AAFV+ Sbjct: 1 MPRQIVI---DEQHRVAAVFAEDQVQELIVASGT--YQVGDVYVGIVENVLPSIDAAFVN 55 Query: 60 YGAE-RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 G+ R+GF+ + ++ N +I +++ Q+V+VQ+ KE GNKG LT Sbjct: 56 IGSGERNGFIHVSDLGPLRLKRN-----HASISELVLPQQKVLVQVMKEPTGNKGPRLTG 110 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAE 178 ++ G YLVL P +SRRIE + ++LA L P MGL+VRT G S E Sbjct: 111 DLAFPGRYLVLRPYGKGV-HLSRRIEDREERNRLKSLAILIKPPQMGLLVRTEAEGVSEE 169 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 A+ DL K WE I++ ++ P L+ ++ + I R RD +D+ I+ D+P + Sbjct: 170 AMIEDLEQLKKLWEDIQQQYQAARGPGLLSRDDDFIQRVLRDVYSEDVNRIVTDSPAGAK 229 Query: 239 LARQHIAALGRPDFSSKIKL--YTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDST 296 R ++ + + + + P+ ++++ + I A + V LPSGG IVI+ T Sbjct: 230 RVRSYLQGWNKGQMPPGVVVDAHREPTPILEYFRVNAVIRQALRPRVDLPSGGYIVIEPT 289 Query: 297 EALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 EALT ID+NS T+ ET TN EAA EIARQLRLR++ G+IV+DFIDM R Q Sbjct: 290 EALTVIDVNSGSFTQSATSRETVLWTNCEAATEIARQLRLRNIAGVIVVDFIDMDSRRDQ 349 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDN 416 V +A+ D+AR Q+ +S GL+E++R+R SL E H CP C G G + Sbjct: 350 LLVLEHFNKALSSDKARPQVVQLSELGLVELTRKRQGQSLYEIFGHSCPTCEGLGILARL 409 Query: 417 ESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPN 476 L +E E + + +R+ + + + Sbjct: 410 PGAEPGRLLTVESGLPVTLPTEGEDGSSPSLLQE-GDSQRAGLRLGSNGVSRTEGRVSLS 468 Query: 477 DQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPD 536 P E + P + P Sbjct: 469 RSRTAPEQRPDLEESRIEVGRKRSRDEWVDPRVGQRPVSRSGEAEGGSLEVPGEDLLQPA 528 Query: 537 VPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAP 596 A + + + G +R G + + E Sbjct: 529 GGGAEQKRKESRRPSRGEDGEEQGSHRDQPTAGRSARAGGVESSESRPARQAITVEMTPL 588 Query: 597 KAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRES 656 + E + + E + TAET Sbjct: 589 QQRVYSELGLSPLLLLDQPPPSGRDTVVMVALPGTVKMASPEEAEAGATSANGTAETVAP 648 Query: 657 RQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQE 710 A ++ AP ++ + V Q++ Sbjct: 649 EAAALPEQEPVNTLPPPAPSEPQTPPPVSSMAEPLATVTPQEVVIDPSQQSPAA 702 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 38/291 (13%), Positives = 72/291 (24%), Gaps = 7/291 (2%) Query: 600 AKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQ 659 A+P R E + S EG R R + SR + Sbjct: 412 AEPGRLLTVESGLPVTLPTEGEDGSSPSLLQEGDSQRAGLRLGSNGVSRTEGRVSLSRSR 471 Query: 660 AEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPV--- 716 ++ + + R+RSR D R Q+ E E E+ ++P Sbjct: 472 TAPEQRPDLEESRIEVGRKRSRDEWVDPRVGQRPVSRSGEAEGGSLEVPGEDLLQPAGGG 531 Query: 717 QPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQT 776 ++++ + P + A + P + + V + + Q Sbjct: 532 AEQKRKESRRPSRGEDGEEQGSHRDQPTAGRSARAGGVESSESRPARQAITVEMTPLQQR 591 Query: 777 APEQQEENNADNRDNGGMPRRSR----RSPRHLRVSGQRRRRYRDERYPTQSPMPLTVAC 832 + + D R P ++++ + A Sbjct: 592 VYSELGLSPLLLLDQPPPSGRDTVVMVALPGTVKMASPEEAEAGATSANGTAETVAPEAA 651 Query: 833 ASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPV 883 A PE PQ + V P + + Sbjct: 652 ALPEQEPVNTLPPPAPSEPQTPPPVSSMAEPLATVTPQEVVIDPSQQSPAA 702 >UniRef50_Q2S597 Ribonuclease, Rne/Rng family subfamily n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S597_SALRD Length = 596 Score = 427 bits (1098), Expect = e-118, Method: Composition-based stats. Identities = 144/451 (31%), Positives = 248/451 (54%), Gaps = 24/451 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + ++ E+ R+A+V+ +L +L IE+ H++ N+Y G+I ++ PS++AAFVD Sbjct: 1 MSKEIVFNVGNEQTRIAIVEDGKLVELYIENAEHKRTIGNLYLGQIRKVMPSIQAAFVDI 60 Query: 61 GAERHGFLPLKEIARE-----------------YFPANYSAHGRPNIKDVLREGQEVIVQ 103 G E+ FL +++ D+L GQ ++VQ Sbjct: 61 GQEQDAFLHFSDLSDNLPYLLDFLGLEAPTVEAIDVPKGKKDWDKRPSDLLNRGQTILVQ 120 Query: 104 IDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEG 163 + KE NKG+ ++T ISLAG +LVL+P +SR+I D+ E+LAS +P+G Sbjct: 121 VTKEPISNKGSRISTDISLAGRFLVLVPLQNYV-AVSRKITDDEERRRLESLASSLVPDG 179 Query: 164 MGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRP-APFLIHQESNVIVRAFRDYL 222 +G+IVRT + A++L D+ ++ W ++K + +P P L+H++ ++ RD Sbjct: 180 VGVIVRTVAQDRDAKSLDKDMKLLMERWRRVEKRLKDKPSPPELVHEDVDMASSIVRDEF 239 Query: 223 RQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQRE 282 ++ IL+D+ + + ++ A+G P +++L+ G+ P+F I+ + AF+ Sbjct: 240 SEEYDRILVDHEGLYSSIQSYVRAVG-PQLVDRVELHEGDQPVFESVGIQHGADRAFKDR 298 Query: 283 VRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGL 342 V LPSGG + I+ TEA+ +D+NS R+ +G E + N NLEAA IARQ+RLRDLGG+ Sbjct: 299 VELPSGGYLFIEKTEAMHVVDVNSGRSGKGKSQAENSLNVNLEAARVIARQIRLRDLGGI 358 Query: 343 IVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHH 402 IV+DFID+ ++ V + +++ +DRA ++ +S FGL+E++RQRL PS+ + Sbjct: 359 IVVDFIDLRDEDDKKKVYDEVKKGFEEDRAVTKVLPMSDFGLVEITRQRLRPSITTTFSS 418 Query: 403 VCPRCSGTGTVRDNESLSLSILRLIEEEALK 433 +GT + ++ LR E + Sbjct: 419 A----NGTPSDDGDDGADPEELRQAERKIQS 445 >UniRef50_A3VT88 Ribonuclease E n=1 Tax=Parvularcula bermudensis HTCC2503 RepID=A3VT88_9PROT Length = 1038 Score = 426 bits (1095), Expect = e-117, Method: Composition-based stats. Identities = 211/664 (31%), Positives = 318/664 (47%), Gaps = 11/664 (1%) Query: 76 EYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPR 135 E I++V++ Q ++VQ+ KEERGNKGAALTTF+SLAG Y VLMPNN R Sbjct: 372 EARRERDRLLRNYRIQEVIKRRQVMLVQVVKEERGNKGAALTTFLSLAGRYGVLMPNNAR 431 Query: 136 AGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAI 194 GG+SR+I DR L++A+A L +P G GLI+RTAG ++ ++ D + + W+ I Sbjct: 432 GGGVSRKISNQSDRRRLRKAMAELNVPAGQGLIIRTAGAKRTKAEIKRDYDYLARLWDTI 491 Query: 195 KKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSS 254 + AP LI++E+++I RA RD +D EIL++ A+ + L P + Sbjct: 492 RSQTLQSVAPCLIYEEASLIKRAIRDLYDKDTAEILVEGEDGYREAKDFMKML-MPSHAK 550 Query: 255 KIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGD 314 ++ Y + PLF HY +E Q++ +Q V L SGG +VI TEAL +ID+NS ++T+ + Sbjct: 551 NVQPYREQEPLFLHYGVERQLDEMYQPVVTLKSGGYLVIQQTEALISIDVNSGKSTKERN 610 Query: 315 IEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARI 374 +E TA TN EAA E+ARQ RLRDL GLIV+DFIDM R+ R VE + +EA++ DRARI Sbjct: 611 VEATALKTNSEAAVEVARQCRLRDLAGLIVVDFIDMDENRNNRTVEKKFKEALKSDRARI 670 Query: 375 QISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKE 434 Q+ IS FGLLEMSRQR + + + CP C G G VR E +L ILR IEE+A + Sbjct: 671 QVGSISTFGLLEMSRQRRRSGIVDGTTRTCPTCDGAGAVRSVEMAALRILRAIEEKAASD 730 Query: 435 NTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEE 494 V A + ++ Y+LN+KR +N IE G R + + Y + + +E Sbjct: 731 KAASVTASAALDVSLYILNQKRDWLNQIEATY-GCRITVEGDSDKNGDQYELTVSGRLKE 789 Query: 495 TPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPA 554 TL +A +L +E + + A A+ + + + A Sbjct: 790 EETLRQGSSAAAVDASSLLENDEQQDDGDTPKEAAASDSDDPEQKSQKADDETAEGGDGK 849 Query: 555 PKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQN 614 PK ++ +A E EQ A + P+Q Sbjct: 850 PKKRRRRRRKRNADSAETKGETESRAPSQPTENETKDEQIEAGAAEPNAGSVKDQSPQQG 909 Query: 615 NRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQA 674 ++ + + D A + R+ Q A T+ + E+ + Sbjct: 910 AAEEQAGTQVDGQTAAKDKD--------SEAAPKPARRRRKPAQPAAETDSGPSDTEKDS 961 Query: 675 PRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQS 734 P +++ R A QEA + + + + P L + E Sbjct: 962 PSPQQAAPRAKATETADQEAGQSSPPKTDAPADKAQPSEPPRAAETIHAPLEDSAQGEDK 1021 Query: 735 VAEE 738 A + Sbjct: 1022 PAPK 1025 Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 35/88 (39%), Positives = 53/88 (60%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+M+I+A EE RVA++ ++ D D ES + + NIY ++TR+EPSL+AAF++YG Sbjct: 3 KKMMIDARHPEETRVAVLSNGKVEDFDFESLSRKPLRGNIYLARVTRVEPSLQAAFIEYG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPN 89 RHGFL EI +Y+ + Sbjct: 63 GNRHGFLAFGEIHSDYYQIPVADREVLR 90 Score = 46.5 bits (108), Expect = 0.005, Method: Composition-based stats. Identities = 34/225 (15%), Positives = 56/225 (24%), Gaps = 11/225 (4%) Query: 834 SPELASGKVWIRYPIVRPQDVQVEEQREQEEVHV--QPMVTEVPVAAAIEPVVSAPVVEE 891 + G D + + Q+ +E + SA E Sbjct: 811 DEQQDDGDTPKEAAASDSDDPEQKSQKADDETAEGGDGKPKKRRRRRRKRNADSAETKGE 870 Query: 892 VAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQ 951 + E + E +E E A +V +Q ++ +V Q + Sbjct: 871 TESRAPSQPTENETKDEQIEAGAAEPNAGSVKDQSPQQGAAEEQAGTQVDGQTAAKDKDS 930 Query: 952 EETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMT 1011 E AE + + + A E ++ P T Sbjct: 931 EAAPKPARRRRKPAQPAAETDSGPSDTE-KDSPSPQQAAPRAKATETADQEAGQSSPPKT 989 Query: 1012 RAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPAR 1056 APA + P A E A +A AP R Sbjct: 990 DAPA--------DKAQPSEPPRAAETIHAPLEDSAQGEDKPAPKR 1026 >UniRef50_C7Q8B4 Ribonuclease, Rne/Rng family n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q8B4_CATAD Length = 1334 Score = 426 bits (1094), Expect = e-117, Method: Composition-based stats. Identities = 165/658 (25%), Positives = 281/658 (42%), Gaps = 17/658 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 ++R+++ + ++ +++ L + + N+Y GK+ + PS+EAAFVD Sbjct: 681 VERVMVVRQSGDRTQIGVLEDGVLVEHYVNRAQSASYVGNVYLGKVQNVLPSMEAAFVDI 740 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ F A I+ VL+ GQ V+ Q+ K+ G+KGA LT+ I Sbjct: 741 GKGRNAVLYAGEVN---FEAAGITGQAKRIESVLKSGQAVLTQVTKDPIGHKGARLTSQI 797 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLV +P GISR++ ++R LK L ++ +PE G+IVRTA G + + L Sbjct: 798 SLPGRYLVYVPEGTMT-GISRKLPENERNRLKTILKAV-VPEHAGVIVRTAAEGATEDEL 855 Query: 181 QWDLSFRLKHWEAIKKAAESR--PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 + D+ WE I++ A++ AP L++ E ++ VR RD +D ++++ + + Sbjct: 856 RRDVERLSAQWEEIQRKAKTSAGSAPTLLYGEPDLTVRVVRDIFNEDFSKLVVSGDQAWD 915 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 R+++ + PD + +++ +T E +F+ ++++ Q+ A R+V LPSGGS+VID TEA Sbjct: 916 TIREYVGGVA-PDLAPRLERWTSEQDIFAVHRVDEQLAKALDRKVWLPSGGSLVIDRTEA 974 Query: 299 LTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 + ID+N+ + T GG++EET N+EAA+EI RQLRLRDLGG+IVIDFIDM ++ Sbjct: 975 MVVIDVNTGKFTGSGGNLEETVTRNNIEAAEEIVRQLRLRDLGGIIVIDFIDMVLESNRD 1034 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V RL E + +DR + Q++ ++ GL++M+R+R+ L E+ C +C+G G + E Sbjct: 1035 LVMRRLLECLGRDRTKHQVAEVTSLGLIQMTRKRVGQGLLEAFSETCDKCNGRGVLVHME 1094 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVP--------IASYLLNEKRSAVNAIETRQDGV 469 + E+ +Q+ + +E Sbjct: 1095 PVPHGHGHGSEDADRDGRSQQNKGGGKQEESRADGGQGGAEEEHEGGRGRRKRRKSHGHA 1154 Query: 470 RCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPAL 529 + Q + + + + +A + Sbjct: 1155 DRQQHFDPQYDVDGVPEEFQDFADGEQAPAGPVTVTKVARVAADGAGVADDADTDRDEDE 1214 Query: 530 ATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETK 589 A P+ P A A L A Sbjct: 1215 AAELSEHSAVDRVPSHEHVVAPVVTPDDVVAAEEADVTERLAVGDAQAHTVYVPRTGGAV 1274 Query: 590 PTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQ 647 + + E +R R R A Sbjct: 1275 SASEADKDETEAEVAEPSAVAAMAVAPAPAAEADPDAPKRRGLRVRRAAKRPAGPPAA 1332 Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 46/476 (9%), Positives = 100/476 (21%), Gaps = 1/476 (0%) Query: 521 RKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKA 580 P A + A+ A + A Sbjct: 3 DNEPTGVPGEQPDQTSDAQDAATAATNEGGAPQRQRRRAASRPAGPPQPPEAGSEAAASG 62 Query: 581 LFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENR 640 + E+KP A+ + + + ++ R + ++ Sbjct: 63 DAAAEPESKPKRARKTAAKKVAAPEPEPETAEPGDSASAAKKTTRARTRKKAAEAEPVAA 122 Query: 641 RNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVE 700 R + TA+T + Q + A A + R R + A + Sbjct: 123 GEARDSGSATAQTAPTEQAQPAADTADDAAKGARTRTRRRATSAGTAAEQVTGADSGAES 182 Query: 701 EQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPA 760 + + + + + A AA+ + Sbjct: 183 AEGAKTADTAAAAAGTGRSETAAAGTGRTGAAKRGTRAAAADRDQASAAAADTASAQVDT 242 Query: 761 PRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERY 820 + + G + +P + D+ Sbjct: 243 SSDQAETSQSDTSQADTAGASRTRTRRRATSAGTAAQQASAPEAATAPQGTAEQADDQSA 302 Query: 821 PTQS-PMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAA 879 + S P L+ A+P A P EQ + E +P Sbjct: 303 DSGSRPTGLSSPFANPFAAPQLPAKTAKKAAPAQETPTEQPGKPEFKAEPKAQAEAPTVP 362 Query: 880 IEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQE 939 + +A + +G + E A Q + Q+ Sbjct: 363 VAAAAAASDDDAESGAKSKRTRRRAASAPAGPPRALEEAAEGQQTQQGQDKQGQDKQGQQ 422 Query: 940 VAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAV 995 + + ++ + + A+ AA+ Sbjct: 423 DKQGQAQQDKQDKQDKPRQGRQSRQSKQDKAQQSQPAAQDTATAQTAAQDAEQPVD 478 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 46/407 (11%), Positives = 81/407 (19%) Query: 489 VRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAA 548 K + E A P + A +K A + A + + Sbjct: 71 KPKRARKTAAKKVAAPEPEPETAEPGDSASAAKKTTRARTRKKAAEAEPVAAGEARDSGS 130 Query: 549 PVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDR 608 AP A A + S G + AE+ + Sbjct: 131 ATAQTAPTEQAQPAADTADDAAKGARTRTRRRATSAGTAAEQVTGADSGAESAEGAKTAD 190 Query: 609 RKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKART 668 +R QA A+T ++ + + Sbjct: 191 TAAAAAGTGRSETAAAGTGRTGAAKRGTRAAAADRDQASAAAADTASAQVDTSSDQAETS 250 Query: 669 ADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQK 728 + + R +R A Q + Sbjct: 251 QSDTSQADTAGASRTRTRRRATSAGTAAQQASAPEAATAPQGTAEQADDQSADSGSRPTG 310 Query: 729 VRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADN 788 + + A P AA P K A+ A + Sbjct: 311 LSSPFANPFAAPQLPAKTAKKAAPAQETPTEQPGKPEFKAEPKAQAEAPTVPVAAAAAAS 370 Query: 789 RDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPI 848 D+ +S+R+ R + R +E Q + + Sbjct: 371 DDDAESGAKSKRTRRRAASAPAGPPRALEEAAEGQQTQQGQDKQGQDKQGQQDKQGQAQQ 430 Query: 849 VRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGV 895 + Q Q Q + AA + V Sbjct: 431 DKQDKQDKPRQGRQSRQSKQDKAQQSQPAAQDTATAQTAAQDAEQPV 477 >UniRef50_A5WCI8 RNAse G n=4 Tax=Moraxellaceae RepID=A5WCI8_PSYWF Length = 613 Score = 423 bits (1088), Expect = e-116, Method: Composition-based stats. Identities = 137/412 (33%), Positives = 216/412 (52%), Gaps = 11/412 (2%) Query: 83 SAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRR 142 I+ L EGQ+++VQ+ K++ G KGA LTT ISL YLV +P++ GIS+R Sbjct: 202 EPPRHELIQYRLHEGQKILVQVTKDQLGTKGARLTTNISLPSRYLVYLPSSEHI-GISQR 260 Query: 143 IEGDD-RTELKEALASLELPEG--MGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKA-- 197 I+ ++ R LK L +L GLI RTA L+ D+ + ++ W I+ Sbjct: 261 IDNEEERHRLKTELGALMQTVNLTGGLIARTAAERVPVAKLEEDIYYLVQLWRTIQARKE 320 Query: 198 --AESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSK 255 A S + LI+QE ++ +R+ RD + D ++++D+ + RQ P + Sbjct: 321 ASAGSGQSAVLIYQELSLPLRSIRDLVHPDTEKVIVDHEGMYNEVRQFAKEFV-PFIYPR 379 Query: 256 IKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDI 315 I Y+GE PLF +++E + A +R V L SGG ++ID TEA+T ID+N+ G + Sbjct: 380 ILPYSGEQPLFDVHRVEEDLRDALKRRVDLKSGGYLIIDQTEAMTTIDVNTGSFVGGRSL 439 Query: 316 EETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQ 375 E+T + TNLEA IARQLRLR+LGG+I++DFIDM +H+ V L+ + QD A+ + Sbjct: 440 EDTVYKTNLEATHAIARQLRLRNLGGIIILDFIDMLEQQHKDDVLENLQYQLSQDYAKTK 499 Query: 376 ISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKEN 435 I+ +S GL+EM+R+R SL + C C G G ++ E++ I R I A N Sbjct: 500 ITQVSELGLVEMTRKRTRESLEQQLCEPCKTCEGKGFIKTAETVCFEIFREIMRCARTYN 559 Query: 436 T-QEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHV 486 + ++ + + LL+ + V +E G + Y + Sbjct: 560 SPKKFTVVAHASVIDLLLSSEADTVADLEY-LLGRVITFEVENLYTQEQYDI 610 Score = 95.4 bits (235), Expect = 1e-17, Method: Composition-based stats. Identities = 30/101 (29%), Positives = 49/101 (48%), Gaps = 1/101 (0%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M L+ E RVA++D + ++ IE NIY G + R+ P ++AAFV+ Sbjct: 1 MSEELLINVSPMESRVAVLDNGVVSEVYIERHNKLGLVGNIYLGTVVRVLPGMQAAFVEI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVI 101 G R FL + ++ R PA +A P I+ ++ V+ Sbjct: 61 GQSRTAFLHVNDMRRIARPA-PTADKAPEIRHNAKQEPTVL 100 >UniRef50_C2BMV7 Ribonuclease E n=3 Tax=Corynebacterium RepID=C2BMV7_9CORY Length = 1294 Score = 422 bits (1085), Expect = e-116, Method: Composition-based stats. Identities = 203/811 (25%), Positives = 339/811 (41%), Gaps = 37/811 (4%) Query: 14 LRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEI 73 +V +++ L + + + NIY G++ + PS+EAAFVD G R+G L EI Sbjct: 422 TQVGVLEDDLLVEHFVTTESQASLIGNIYLGRVQNVLPSMEAAFVDIGQGRNGVLYAGEI 481 Query: 74 AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 +++ L+ G +V+VQ+ K+ G+KGA LTT ISLAG YLV +P Sbjct: 482 DW---RKTKLHGRARKVENALKSGDQVLVQVAKDPIGHKGARLTTQISLAGRYLVYVPGG 538 Query: 134 PRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEA 193 R+ GISR++ +R LK+ L + +P G I+RTA EA+ D++ WE Sbjct: 539 -RSAGISRKLPAPERKRLKDILGRV-VPGDGGAIIRTAAENVPEEAIATDVNRLHSRWED 596 Query: 194 IKKAAESRP-----APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALG 248 I A+ P +++E N++++ RD +D E+++D + R ++ ++ Sbjct: 597 IVAHAKKEKSSKGAKPVTMYEEPNMLIKVVRDLFNEDFTELIVDGKRSFNTVRAYVDSMA 656 Query: 249 RPDFSSKIKLYT----GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDI 304 PD + ++ Y G F Y+I+ Q+ A R+V LPSGG++VID TEA+T ID+ Sbjct: 657 -PDLADRVVRYRAKDHGGQDAFEAYRIDEQLHKALSRKVWLPSGGTLVIDRTEAMTVIDV 715 Query: 305 NSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL 363 N+ + T GG++EET NLEAA+EI RQ+RLRDLGG+IV+DFIDM +Q V RL Sbjct: 716 NTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDLGGMIVVDFIDMVLPENQDLVLRRL 775 Query: 364 REAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSL-S 422 +EA+ +DR R Q+S ++ GL++M+R+RL L E+ C C+G G + + Sbjct: 776 KEALGRDRTRHQVSEVTSLGLVQMTRKRLGTGLVETFSTECECCNGRGIIIHQYPVEEAE 835 Query: 423 ILRLIEEEALKENTQEVHAIVPVP--IASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 + + K + P A + + ++ + P E Sbjct: 836 DEQRSKHSGRKPKAHKKQHHDPQQHPAAVAMHKHELDDAAESSSKPKRFKKTQAPVYGTE 895 Query: 481 TPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPA 540 + + E + ++ + SEE + R ++ Sbjct: 896 SEEAARESAKTSLEDLVANVVVDERGPAQSHGGSEEHSGDHDRSKERGRGRGRRRARKRT 955 Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 T A A A S + + + A Sbjct: 956 QTEVSDIE-----------AIAYAAADNAAESDEVQEFNSYVPDADTDADSGAVAKAHPG 1004 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 R + +KPR+ RR + E+ + +A +T + + +A Sbjct: 1005 AGARSKRGKKPRRATRRSKATHTVAGGEQKAPEKETAPEKTAPEKATGKTYDEAVAEFEA 1064 Query: 661 EVTEKARTADEQQAPRRERSRR-------RNDDKRQAQQEAKALNVEEQSVQETEQEERV 713 K RT ++ RR + + + D A+A + ++ S +E + R Sbjct: 1065 SPRRKRRTRGNSRSDRRPQPQDFAVSGDHDSADTDGNASGAEAQHGQQASREERKARGRG 1124 Query: 714 RPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVV 773 R R +Q + R V E+A + +AE ++A Sbjct: 1125 RRRSVRPQQAKRRTTSRVPHEVKEKAQEHEHKQAGGSAEQRHEKAAGAARAGRAGGKGRG 1184 Query: 774 AQTAPEQQEENNADNRDNGGMPRRSRRSPRH 804 + A Q A + RS + Sbjct: 1185 RRRAVRQAAPKKAVAENPKAAKTAQGRSTQQ 1215 >UniRef50_D0LAJ7 Ribonuclease, Rne/Rng family n=1 Tax=Gordonia bronchialis DSM 43247 RepID=D0LAJ7_GORB4 Length = 1123 Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats. Identities = 162/618 (26%), Positives = 266/618 (43%), Gaps = 21/618 (3%) Query: 14 LRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEI 73 +VA+++ L + + + NIY G++ + P +EAAFVD G R+G L E+ Sbjct: 512 TQVAVLEDGVLVEHFVTTATSSSMVGNIYLGRVQNVLPGMEAAFVDIGRGRNGVLYAGEV 571 Query: 74 AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 + + G I+ L+ G V+VQ+ K+ G+KGA LTT ISLAG YLV +P Sbjct: 572 NWDAAGLD---GGSRKIEQALKPGDNVLVQVSKDPVGHKGARLTTQISLAGRYLVYVPGG 628 Query: 134 PRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEA 193 GISR++ +R LK+ LA L +P G+I+RTA G SAE L D++ W + Sbjct: 629 SST-GISRKLPDVERKRLKQILAKL-VPADAGVIIRTASEGVSAEELGADIARLEAKWRS 686 Query: 194 IKKAAESRPA------PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAAL 247 I ++ P +++E +++VR RD +D +++++ K L ++ ++ Sbjct: 687 IDESVTQAKKNSGSAGPKALYEEPDLLVRVVRDLFNEDFKKLVVEGAKAWNLVEGYVGSV 746 Query: 248 GRPDFSSKI----KLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAID 303 PD ++ K + F ++I+ Q+ A R+V LPSGG+++I+ TEA+T +D Sbjct: 747 A-PDLMDRVEKFEKPHADAPDSFVVHRIDEQLAKALDRKVWLPSGGTLIIEHTEAMTVVD 805 Query: 304 INSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENR 362 +N+ + T GG++EET NLEAA+EI RQ+RLRD+GG+I++DFIDM ++ V R Sbjct: 806 VNTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIIVDFIDMVLESNRDLVLRR 865 Query: 363 LREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLS 422 L EA+ +DR R Q+S ++ GL++M+R+RL L E+ C C G G + + + Sbjct: 866 LTEALARDRTRHQVSEVTSLGLVQMTRKRLGTGLLEAFSTTCTTCGGRGVIVHANPVEVR 925 Query: 423 ILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETP 482 E + ++ + + Sbjct: 926 SEEAGRVEGGSKRSRRGKRKPEAAPEHKPAHHPAEHPMFRAMAAHSHDDPEHVAHDSDAA 985 Query: 483 HYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPT 542 + S A + + + + T P A Sbjct: 986 PDSAAEASDSAAEASDSAAEASDSAAAASDSTAAAPESTPKTPESTPTTPPSTSGPAAEG 1045 Query: 543 PAEPAAPVVAPAPKAAPATPAAP----AQPGLLSRFFGALKALFSGGEETKPTEQPAPKA 598 P A+P P A P F T A + Sbjct: 1046 DGSPRRRRRVVRRAASPTAAPEPMVLTAAPDGQGDAAPTPVTTFGPVSPTSAESAVAVRR 1105 Query: 599 EAKPERQQDRRKPRQNNR 616 + P + Sbjct: 1106 RPRRRSAGRPAGPPPGEQ 1123 >UniRef50_A2BYM7 S1 RNA binding domain:Ribonuclease E and G n=8 Tax=Prochlorococcus marinus RepID=A2BYM7_PROM5 Length = 608 Score = 422 bits (1083), Expect = e-116, Method: Composition-based stats. Identities = 149/613 (24%), Positives = 258/613 (42%), Gaps = 25/613 (4%) Query: 1 MKRMLINATQQEELRVA-LVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 M + +I A E+ R+A L+ R+ +L + + + +I+ G + + P ++AAF+ Sbjct: 1 MSQQIIIA---EQARIAALLTDDRVDELIVAQG--QYQIGDIFLGTVENVLPGIDAAFIH 55 Query: 60 YGA-ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 G E++GF+ + ++ G I ++L Q+V+VQ+ KE GNKG LT Sbjct: 56 IGESEKNGFIHVSDLGPLRLK-----KGVVGITELLEPKQKVLVQVMKEPTGNKGPRLTG 110 Query: 119 FISLAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSA 177 ISL G YL+L P ISR+I +R+ L+ AL L P GL+ RT Sbjct: 111 NISLPGKYLILQPFGQGVN-ISRKINTDTERSRLR-ALGVLIKPPSTGLLFRTEAEKIKE 168 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 E L DL ++ W+ + K +E+ P LI+++ + ++ RD ++ +++IDN L Sbjct: 169 ELLIEDLENLIQQWDQVLKISETCQPPNLINRDEDFSLKILRDCIKASTSKVVIDNKVAL 228 Query: 238 ELARQHIAALGRPDFSSKIKLYTG-EIPLFSHYQIESQIESAFQREVRLPSGGSIVIDST 296 E A+ + + + + YQI I+ A + V LPSGG I+I+ T Sbjct: 229 EKAKDFL--INNDSNVDLVLHNNDINEHILEKYQINKTIQKALEPRVDLPSGGYIIIEPT 286 Query: 297 EALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQ 356 EALT ID+NS TR + +T TN EAA EI+RQ++LR++GG++VIDFIDM R Q Sbjct: 287 EALTVIDVNSGSFTRSANSRQTVLWTNCEAAVEISRQMKLRNIGGVLVIDFIDMESRRDQ 346 Query: 357 RAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDN 416 + + A++ D AR QI+ ++ GL+E++R+R ++ E C C+G G ++ Sbjct: 347 FQLLEQFTLAIKDDSARPQIAELTELGLVELTRKRQGQNIYELFGKKCNACNGLGHIKSL 406 Query: 417 ESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPN 476 + A K + + + + N+++ + + I+ Sbjct: 407 -PNYQNSNSETNHSAKKSSRLNNTKFTDLEPSEVIENQEKIVKKELPNSK------ILNK 459 Query: 477 DQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPD 536 D ++ E + + T Sbjct: 460 DDDPAKQKENDNEIVNTHNSKEKKVITVELSEVEKIVYSQLGINPLIKLGKQYLTNNHLV 519 Query: 537 VPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAP 596 E + + + S + + +E + Sbjct: 520 RLENSNNNEKELSLQKNKKAKTKVSNKKTNKKSSTSNSIEKSEVEVNESKEINHESKLPK 579 Query: 597 KAEAKPERQQDRR 609 A E + Sbjct: 580 ITTANEEVEITDE 592 >UniRef50_Q6B930 Ribonuclease E n=1 Tax=Gracilaria tenuistipitata var. liui RepID=Q6B930_GRATL Length = 497 Score = 421 bits (1082), Expect = e-116, Method: Composition-based stats. Identities = 117/384 (30%), Positives = 196/384 (51%), Gaps = 11/384 (2%) Query: 23 RLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA-ERHGFLPLKEIAREYFPAN 81 ++ + I + + + +IY G + +I S+ AAF+ + GF+ + +I Sbjct: 21 KIQE--IITINNPYQVNDIYIGTVEKIFTSINAAFIKLNKSGKSGFIHINDIKHL----- 73 Query: 82 YSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISR 141 +I+ VL Q ++VQ+ KE KG LT I L G YLVLMP IS Sbjct: 74 KKGKHVKSIEKVLSINQIILVQVTKEPTIYKGPRLTANIHLHGKYLVLMPFCS-TICISH 132 Query: 142 RIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESR 201 +I + +L L P MGL+++++ G + + DL K W I+KA Sbjct: 133 KIYDHNERTYLYSLGVLLKPGKMGLLIKSSAQGVKEKIILKDLDDLKKQWGFIEKAIIEY 192 Query: 202 PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSK--IKLY 259 +P L++++ ++I R RD+ + +I+ID+ + L ++ K ++LY Sbjct: 193 SSPLLLYKDEDLIKRIIRDFYEDSVTKIIIDSKEGLNQLNYYLYKWNCISNRIKTILQLY 252 Query: 260 TGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETA 319 + + + I+ I +A + +V+LP GG I+I+S EALT ID+NS + G+ +E Sbjct: 253 NHQKCILDEFYIKHAINNALKPKVKLPYGGHIIIESNEALTVIDVNSGSFNKSGNSKEAI 312 Query: 320 FNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHI 379 TN AA EIA QL++R++ G+I+IDFIDM+ Q + + ++ D A+ QI + Sbjct: 313 LKTNFYAAIEIAHQLKIRNINGVIIIDFIDMSSQGDQLQLLEHFSKLLKLDSAKPQIVQL 372 Query: 380 SRFGLLEMSRQRLSPSLGESSHHV 403 S GL+E++R+R SL E H Sbjct: 373 SELGLVELTRRRRGQSLQELFIHE 396 >UniRef50_C7MPQ3 Ribonuclease, Rne/Rng family n=2 Tax=Actinomycetales RepID=C7MPQ3_SACVD Length = 1093 Score = 420 bits (1079), Expect = e-115, Method: Composition-based stats. Identities = 164/604 (27%), Positives = 268/604 (44%), Gaps = 20/604 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 ++R ++ A + + ++ +++ L + + S N+Y G++ + PS+EAAF+D Sbjct: 494 VERTMVVAERGDSTQIGVLEDGVLVEHFVTSSDSGSIVGNVYLGRVQNVLPSMEAAFIDI 553 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + A I+ L G V+VQ+ K+ G+KGA LTT I Sbjct: 554 GRGRNAVLYAGEVDWDAAGLEGKAR---KIEQALTTGDHVLVQVTKDPVGHKGARLTTQI 610 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G +LV +P+ A GISR++ ++R LK+ L + +P G+I+RTA G S E L Sbjct: 611 SLPGRFLVYVPSG-GATGISRKLPENERRRLKDILKRI-VPSDAGVIIRTASEGISEEEL 668 Query: 181 QWDLSFRLKHWEAIKKAA-----ESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPK 235 D+ WE IK+ A + AP L++QE +++V+ RD +D ++++ Sbjct: 669 ARDVRRLKAQWEVIKEKAEAASAKKSGAPALLYQEPDLLVKVIRDLFTEDFKKLVVQGDT 728 Query: 236 VLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDS 295 E R ++ + PD +++ Y G +F+ Y+I+ Q+ A R+V LPSGG +VID Sbjct: 729 AWETIRNYVEHVA-PDLLDRVERYVGTGDVFADYRIDEQLMKALDRKVWLPSGGYLVIDR 787 Query: 296 TEALTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVR 354 TEA+T ID+N+ + T GG++EET NLE+A+EI RQLRLRD+GG+IVIDFIDM Sbjct: 788 TEAMTVIDVNTGKFTGSGGNLEETVTRNNLESAEEIVRQLRLRDIGGIIVIDFIDMVLES 847 Query: 355 HQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVR 414 ++ V RL E + +DR R Q++ ++ GL++M+R+R+ L E+ C C G G + Sbjct: 848 NRELVLRRLTECLSRDRTRHQVAEVTSLGLVQMTRKRVGTGLLEAFSTTCEHCKGRGVIV 907 Query: 415 DNESL----SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVN----AIETRQ 466 + + K E H V A+ ++ Sbjct: 908 STDPHRGNGHGNGHHGSRRSRNKSKAGEQHGTKAVEQAAQGPTPEQRESAVSAVQAMANA 967 Query: 467 DGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQ 526 V + + + + E Sbjct: 968 SKVALTKTSESESDAERADRSGEDTRTTVEAQPDESAAVDGQRNGAVPVRPEEEAASTLS 1027 Query: 527 PALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGE 586 T + P A P A + + R A Sbjct: 1028 SVAKTSTSAEESAEDRPESTADGQREQRPTTTAAAAVSEPAVRTVRRPRRAAVRPAGPPV 1087 Query: 587 ETKP 590 + Sbjct: 1088 PARD 1091 Score = 48.4 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 31/189 (16%), Positives = 44/189 (23%), Gaps = 2/189 (1%) Query: 836 ELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGV 895 E + Q + E AA PV E A Sbjct: 80 ETEPPDGQEQSDTDATQTDITQTVEPAEAPAADAGDEPAADPAAAPNATEEPVAEGAATE 139 Query: 896 VEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQ--VITESDVAVAQEVAEQAEPVVEPQEE 953 +P+ +VV + E+ V +ES + Q PVVEP E Sbjct: 140 EPEKDPEKDPEKDVVADSAESKKDEETAEEDPRGVRSESSEQAGATESPQGAPVVEPAET 199 Query: 954 TADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRA 1013 T V+ P PV + + + Sbjct: 200 GGTPSATTPTGMAPPVTAPVLIPPVPPVQSTQPEPRPEIPHTPVFAAPSPLFLPPEPIAS 259 Query: 1014 PAPEYVPEA 1022 P EA Sbjct: 260 PPAAAKGEA 268 >UniRef50_Q8GZQ4 Endoribonuclease n=8 Tax=core eudicotyledons RepID=Q8GZQ4_ARATH Length = 996 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 141/488 (28%), Positives = 235/488 (48%), Gaps = 37/488 (7%) Query: 44 GKITRIEPSLEAAFVDYGAERHGFLPLKEIAR-EYFPANYSAHGRPNIKDV-------LR 95 G + + A V+ G+E +G +P++ + +N S + +R Sbjct: 479 GLVNGTVVNHGA--VEVGSE-NGHIPMERGHSADSLDSNASVAKASKVMSSKDNKWIQVR 535 Query: 96 EGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEAL 155 +G ++IVQ+ KE G KG LT + L + VL+ R G+S++I G +RT LK Sbjct: 536 KGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRI-GVSKKISGVERTRLKVIA 594 Query: 156 ASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRP----------APF 205 +L P+G GL VRT G S E LQ DL L W+ I A+S P Sbjct: 595 KTL-QPQGFGLTVRTVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADEGVEGAIPA 653 Query: 206 LIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPL 265 L+H+ + +DY + ++++D+P+ ++ + PD ++++L+ IPL Sbjct: 654 LLHRAMGQTLSVVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMA-PDLCNRVELHDKGIPL 712 Query: 266 FSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSAR--ATRGGDIEETAFNTN 323 F Y+IE +IE + V L +GGS+VI+ TEAL +ID+N +G E+ N Sbjct: 713 FDLYEIEEEIEGILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVN 772 Query: 324 LEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFG 383 L AA +IAR++RLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++S +SR G Sbjct: 773 LAAARQIAREIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRHG 832 Query: 384 LLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQ------ 437 L+E++R+R+ PS+ C C TG V E+ I + I + K + Sbjct: 833 LMEITRKRVRPSVTFMISEPCSCCHATGRVEALETTFSKIEQEICRQLAKMEKRGDLENP 892 Query: 438 ----EVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGE 493 V ++S+L KR+ + I + V ++ + V + Sbjct: 893 KSWPRFILRVDSHMSSFLTTGKRTRLA-ILSSSLKVWILLKVARHFTRGTFEVKPFMDEK 951 Query: 494 ETPTLSYM 501 + Sbjct: 952 TVNERQHQ 959 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 4/98 (4%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 +LIN++ R+A+++G +L +L +E + ++Y G IT+ P + AFV+ G+ Sbjct: 331 ILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNIGSA 390 Query: 64 RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVI 101 RH F+ +K + + + D G ++ Sbjct: 391 RHSFMDIKSNREPFIFPPFCDGSKKQAAD----GSPIL 424 >UniRef50_Q1V2D3 Ribonuclease E/G n=5 Tax=Bacteria RepID=Q1V2D3_PELUB Length = 619 Score = 419 bits (1076), Expect = e-115, Method: Composition-based stats. Identities = 166/450 (36%), Positives = 255/450 (56%), Gaps = 14/450 (3%) Query: 73 IAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPN 132 + P R I++V++ Q +++Q+ K+ERG KGAAL+TFIS+AG Y+VLMPN Sbjct: 161 VLHGRKPETRFRSKRYKIQEVIKPNQVILIQVLKDERGQKGAALSTFISIAGKYIVLMPN 220 Query: 133 NPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHW 191 P+ GGISR+I +R +++ L + +P+ MGLIVRTAG K+ + DL +K W Sbjct: 221 TPKGGGISRKIFNPGERKKIRTILNDIVIPKEMGLIVRTAGSNKTKNDIDHDLQTLIKTW 280 Query: 192 EAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPD 251 IK+ A + AP LIHQES++I R RD + I+I+ + + A+ + L P Sbjct: 281 NEIKENALNSIAPSLIHQESDIIKRTLRDMYDESTNSIVIEGNEGYKKAQNFMK-LMMPS 339 Query: 252 FSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATR 311 KIK Y ++PLF IE ++ + E++L SGG +VI+ TEAL +IDINS + + Sbjct: 340 HVKKIKKYREKVPLFFKENIEEKLNQIYDSEIKLKSGGYLVINPTEALVSIDINSGSSIK 399 Query: 312 GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDR 371 ++E TA +TNLEAA+EI+RQ+++RDL GLI+IDFIDM ++R VE +L+E R DR Sbjct: 400 QKNVESTALDTNLEAAEEISRQIKIRDLSGLIIIDFIDMLSFGNRRLVERKLKEQCRTDR 459 Query: 372 ARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEA 431 ARIQI IS FGLLEMSRQRL S + +ES ++ IL+L+E +A Sbjct: 460 ARIQIGRISTFGLLEMSRQRLRESAVKWKVT-----------LTDESFAMKILKLVEVKA 508 Query: 432 LKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRK 491 + + V + I+ ++ + E + + ++ I+ ++ + P Y + K Sbjct: 509 VLTKAKFVELKICEKISDFMKENFIEDLKYFEEK-NLIKIDIIADNSLIIPEYIIDLQNK 567 Query: 492 GEETPTLSYMLPKLHEEAMALPSEEEFAER 521 ++T + + KL + F Sbjct: 568 TKKTIEIVQHIEKLKNLEEQKKEFKSFESP 597 Score = 81.9 bits (200), Expect = 1e-13, Method: Composition-based stats. Identities = 34/83 (40%), Positives = 51/83 (61%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K + I+A+ E RV L G+ + D + E + K NIY GK++R+EPSL+AAF+D+G Sbjct: 3 KNLYIDASHPNETRVVLKSGENIEDYEYEGLKNNLIKNNIYLGKVSRVEPSLQAAFIDFG 62 Query: 62 AERHGFLPLKEIAREYFPANYSA 84 +RHGFL +I +Y+ S Sbjct: 63 RDRHGFLSFNDIQSDYYQIPQSD 85 >UniRef50_C6J9J6 Putative uncharacterized protein n=1 Tax=Ruminococcus sp. 5_1_39BFAA RepID=C6J9J6_9FIRM Length = 398 Score = 417 bits (1071), Expect = e-114, Method: Composition-based stats. Identities = 112/389 (28%), Positives = 196/389 (50%), Gaps = 11/389 (2%) Query: 17 ALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIARE 76 A + ++ +L E G + NIY G+I I ++ AAFV A +L L + Sbjct: 17 AYEEDGKVMELRFEPVGEKSSLGNIYVGQIENIAANIGAAFVQISAGEKCYLQLSDAPNA 76 Query: 77 YFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRA 136 + + L+ G E++VQI +E K A+TT ++ G YLVL + Sbjct: 77 IYASVKKGDRP------LKAGDEILVQISREAMKGKLPAVTTNLNFTGKYLVLTT-GDKK 129 Query: 137 GGISRRIEGDDRTELKEALASL--ELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAI 194 G+S ++ DDR+ + + + + + G+IVRT S E + +L + + Sbjct: 130 FGLSSKLSNDDRSRISKWMEAEVNRPDKEFGIIVRTNAADASKEEILKELEYLKGLYHKA 189 Query: 195 KKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSS 254 SR +++ + A RD +++ EI+ D P++ ++ + P+ Sbjct: 190 AVDGRSRTCFSCVYRTEPFYISAVRDANSRNLEEIITDIPEISRQISDYLNS-NSPEEKE 248 Query: 255 KIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGG 313 K++ Y ++ PL+ Y++E+ +E +V L SGG +VI TEA +ID+NS + T Sbjct: 249 KLRFYDDKLLPLYKLYRLETVLEEIQHEKVWLNSGGFLVIQQTEAFVSIDVNSGKFTGKK 308 Query: 314 DIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRAR 373 ++ET NLEAA EIARQLRLR+L G+I+IDFI+M HQ + + L++ +R+D + Sbjct: 309 KMQETYRKINLEAAKEIARQLRLRNLSGIILIDFINMENQDHQDELFHVLQKYLRKDPVK 368 Query: 374 IQISHISRFGLLEMSRQRLSPSLGESSHH 402 + I+ +LE++R+++ + E Sbjct: 369 AKAVDITPLHILELTRKKVRKPVIEEIRE 397 >UniRef50_B1VGM2 Ribonuclease E n=1 Tax=Corynebacterium urealyticum DSM 7109 RepID=B1VGM2_CORU7 Length = 1190 Score = 416 bits (1068), Expect = e-114, Method: Composition-based stats. Identities = 182/797 (22%), Positives = 327/797 (41%), Gaps = 34/797 (4%) Query: 14 LRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEI 73 +V +V+ +L + + S + NIY G++ + S+EAAF+D G R+ L E+ Sbjct: 396 TQVGVVEDGQLVEHFVTSDTQQSMVGNIYLGRVQNVLASMEAAFIDIGTGRNAVLYASEV 455 Query: 74 AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 + + I LR G +V+VQ+ K+ G+KGA LT IS AG YLV P Sbjct: 456 NWH---SPHLHSKSRRIDQALRSGDQVMVQVIKDPVGHKGARLTNRISFAGRYLVYFPGG 512 Query: 134 PRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEA 193 GISR++ +R LKE L + +P G I+RTA + E ++ D++ K W Sbjct: 513 T-TAGISRKLPEAERKRLKEILQRV-VPGQGGAIIRTAAENVAEELIEEDVNRLHKQWLN 570 Query: 194 I-----KKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALG 248 I K+ P +++E N+++ RD +D E+L++ K + R ++ + Sbjct: 571 IEKTEAKERKSKGAKPVTLYEEPNMLITVIRDLFNEDFSELLVEGDKSWRMVRDYMGRMA 630 Query: 249 RPDFSSKIKLYT----GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDI 304 P+ ++ + + +F+ ++++ Q+ A R+V LPSGG +VID TEA+T ID+ Sbjct: 631 -PELMDRVHKWHPEQHADEDVFAAHRLDDQLAKALCRKVWLPSGGHLVIDHTEAMTVIDV 689 Query: 305 NSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL 363 N+ GG++EET NLEAA+EI RQ+RLRD+GG+IV+DFIDM +Q V RL Sbjct: 690 NTGSFVGSGGNLEETVTENNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLEENQDLVLRRL 749 Query: 364 REAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSI 423 E + +DR ++S ++ GL++++R+RL L E+ C C G G + + + Sbjct: 750 IEYLGRDRTHHKVSEVTSLGLVQITRKRLGAGLLETFSTTCECCDGRGVIVHPDPVE--- 806 Query: 424 LRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPH 483 ++ + + + + ++++ E RQ G DQ H Sbjct: 807 ----QDFSEEPERRRRSSRGNGRGRDERGSKEQRNGQGTEQRQGGRG------DQGSKNH 856 Query: 484 YHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTP 543 + + + T + A E+ R Q + D Sbjct: 857 GRDEQRDQRGKNATRHEDKGSKSKVANGKGREDAQDHRNSEGQERRSGKQRQDSQAGSES 916 Query: 544 AEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPE 603 A + + Q S A G E K + + +A + Sbjct: 917 AADLGGEQKQETRTSRRGGRRSVQRRTSSSVKDATARTEQGSAEKKQSADRSDEASQSGQ 976 Query: 604 RQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVT 663 + RR R+ RR ++ + + + N + + + ++ R +Q++E Sbjct: 977 ERAPRRVVRRIVRRTAPSQQRGGAAQRRSAANADAPELKISSREDRGSDQRGEQQKSESG 1036 Query: 664 EKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQ----EERVRPVQPR 719 + ++ R + R++D ++ + Q +Q + R + Sbjct: 1037 SRGARRRGRRVVRSRPAVRQSDTRQAGGDTLRGEESSGQQRSGQKQGSAGDRRSSATRRS 1096 Query: 720 RKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPE 779 + + +E +P + P P P A+ P+ Sbjct: 1097 GTRGAGKYGATTYEEAVKEFENSPRRRRRTRGNSVSDRRPQPED-FGAQPEANQAKEEPK 1155 Query: 780 QQEENNADNRDNGGMPR 796 ++ N Sbjct: 1156 RESRNAGKTEQPAQSES 1172 Score = 44.9 bits (104), Expect = 0.019, Method: Composition-based stats. Identities = 28/289 (9%), Positives = 62/289 (21%) Query: 687 KRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVE 746 + + V V + +R+ + V + A Sbjct: 51 AGKVPSSTLSNEEATDVVSRLAAGGGVTQSEQPAAKREADAAEPAADKVEAKKRTAKKAG 110 Query: 747 ETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLR 806 +A + K A E E++ + ++ + R Sbjct: 111 AKKSAAKKATPKKTTAKKSTKKTAAKEAAPTQETPEQDTSPEAAEQQEEQKKAEPKKGAR 170 Query: 807 VSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVH 866 S Q+ ++ + + + + +P+ E+ + E Sbjct: 171 KSTQKSAEKSAQQAEKKGAAKKSSTKRAATKKAEAKKAEVDNAQPRQAAAEQPAQAESPA 230 Query: 867 VQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQP 926 ++ A V V V +Q + + Sbjct: 231 GTTPESQTSTDEATPQPTRRRVRRIVRRVGSRAIQQDSAAAKTELSDEGSKKQEPSKNSE 290 Query: 927 QVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVA 975 E + EP +E + E E V Sbjct: 291 AKKAEPKKKEQKAQQPNPEPQGATEEAITADQLHPGEREEADIVDEPVR 339 Score = 43.4 bits (100), Expect = 0.045, Method: Composition-based stats. Identities = 28/254 (11%), Positives = 71/254 (27%) Query: 676 RRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSV 735 + E+ + + K + + + ++ + P++ + + K + Sbjct: 79 QSEQPAAKREADAAEPAADKVEAKKRTAKKAGAKKSAAKKATPKKTTAKKSTKKTAAKEA 138 Query: 736 AEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMP 795 A AAE ++ A + + A+ + +Q E+ A + + Sbjct: 139 APTQETPEQDTSPEAAEQQEEQKKAEPKKGARKSTQKSAEKSAQQAEKKGAAKKSSTKRA 198 Query: 796 RRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQ 855 + + V + R+ E+ T + VR + Sbjct: 199 ATKKAEAKKAEVDNAQPRQAAAEQPAQAESPAGTTPESQTSTDEATPQPTRRRVRRIVRR 258 Query: 856 VEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHP 915 V + Q++ + EP ++ + E Q P+P+ Sbjct: 259 VGSRAIQQDSAAAKTELSDEGSKKQEPSKNSEAKKAEPKKKEQKAQQPNPEPQGATEEAI 318 Query: 916 EVIAAAVTEQPQVI 929 E+ + Sbjct: 319 TADQLHPGEREEAD 332 >UniRef50_Q9M498 Endoribonuclease E (Fragment) n=6 Tax=Magnoliophyta RepID=Q9M498_ARATH Length = 575 Score = 415 bits (1065), Expect = e-114, Method: Composition-based stats. Identities = 132/408 (32%), Positives = 214/408 (52%), Gaps = 26/408 (6%) Query: 44 GKITRIEPSLEAAFVDYGAERHGFLPLKEIAR-EYFPANYSAHGRPNIKDV-------LR 95 G + + A V+ G+E +G +P++ + +N S + +R Sbjct: 152 GLVNGTVVNHGA--VEVGSE-NGHIPMERGHSADSLDSNASVAKASKVMSSKDNKWIQVR 208 Query: 96 EGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEAL 155 +G ++IVQ+ KE G KG LT + L + VL+ R G+S++I G +RT LK Sbjct: 209 KGTKIIVQVVKEGLGTKGPTLTAYPKLRSRFWVLLTRCKRI-GVSKKISGVERTRLKVIA 267 Query: 156 ASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRP----------APF 205 +L P+G GL VRT G S E LQ DL L W+ I A+S P Sbjct: 268 KTL-QPQGFGLTVRTVAAGHSLEELQKDLDGLLLTWKNITDEAKSAALAADEGVEGAIPA 326 Query: 206 LIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPL 265 L+H+ + +DY + ++++D+P+ ++ + PD ++++L+ IPL Sbjct: 327 LLHRAMGQTLSVVQDYFNDKVEKMVVDSPRTYHEVTHYLQDMA-PDLCNRVELHDKGIPL 385 Query: 266 FSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSAR--ATRGGDIEETAFNTN 323 F Y+IE +IE + V L +GGS+VI+ TEAL +ID+N +G E+ N Sbjct: 386 FDLYEIEEEIEGILSKRVPLSNGGSLVIEQTEALVSIDVNGGHGMFGQGNSQEKAILEVN 445 Query: 324 LEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFG 383 L AA +IAR++RLRD+GG+IV+DFIDM ++R V +++AV +DR+ +++S +SR G Sbjct: 446 LAAARQIAREIRLRDIGGIIVVDFIDMADESNKRLVYEEVKKAVERDRSLVKVSELSRHG 505 Query: 384 LLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEA 431 L+E++R+R+ PS+ C C TG V E+ I + I + Sbjct: 506 LMEITRKRVRPSVTFMISEPCSCCHATGRVEALETTFSKIEQEICRQL 553 Score = 83.0 bits (203), Expect = 6e-14, Method: Composition-based stats. Identities = 24/98 (24%), Positives = 48/98 (48%), Gaps = 4/98 (4%) Query: 4 MLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAE 63 +LIN++ R+A+++G +L +L +E + ++Y G IT+ P + AFV+ G+ Sbjct: 4 ILINSSICTVQRIAVLEGGKLVELLLEPVKTNVQCDSVYLGVITKFVPHMGGAFVNIGSA 63 Query: 64 RHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVI 101 RH F+ +K + + + D G ++ Sbjct: 64 RHSFMDIKSNREPFIFPPFCDGSKKQAAD----GSPIL 97 >UniRef50_A0Q1T9 Ribonuclease G n=4 Tax=Clostridium RepID=A0Q1T9_CLONN Length = 481 Score = 414 bits (1064), Expect = e-114, Method: Composition-based stats. Identities = 133/499 (26%), Positives = 248/499 (49%), Gaps = 24/499 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M+ + I + LR+ L + L + IE E IYKG + I P+++ AF+D Sbjct: 1 METIYIEREE-GILRIVLREDDILKECFIEEEKLEPSPGEIYKGVVKNIVPAIKCAFIDI 59 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G +++ ++ L D ++ G EV+V+I KE G KG +T+ I Sbjct: 60 GYDKNAYMYLN---------------HKFKNDDVKNGDEVLVEIMKESLGEKGPKVTSSI 104 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 S+ G Y+V++ +N + G S++IE +D + + ++ P+ +G+++RT + + E + Sbjct: 105 SVPGRYVVIVTHNKKI-GFSKKIEDNDNFK-SYIIDNINKPDDIGIMIRTNALDATIEDI 162 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 +L +++ I + P L++ + R D L + +++++N E Sbjct: 163 NKELEKLYDNYKKIVQEGTYSLKPKLLYNGGGTLGRILNDILTFNTKKVIVNNEDDAEYI 222 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 ++ + + D +I++Y+G+ LFSHY IE +I S ++ LPSGG+IVID TEA+ Sbjct: 223 KEFVED--KSDLELEIEVYSGKQSLFSHYNIEKEILSLRNNKIVLPSGGNIVIDRTEAMY 280 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ID+NS + T+ I++TA TNLEAA EIARQ+ +R+L G+I+IDFID+ +++ + Sbjct: 281 VIDVNSGKNTKQTSIDKTALVTNLEAAQEIARQIMMRNLSGIIIIDFIDIHNYEYKKKIM 340 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLS 420 + L+E ++D+ + I ++ L++++R+R ++ E C C G E L Sbjct: 341 HILKEEFKEDKKKTVIYPFTQLNLVQIARKRRGKAISEYIEEDCSMCHGKSKRIKLEYL- 399 Query: 421 LSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQME 480 +LI++E K + + + I + + +G+ I N Sbjct: 400 ---NKLIKDEITKIDEGYNIKDIYIEIDEIYKKDILGDIIKFIEEIEGMHKSIYVNFISN 456 Query: 481 TPHYHVLRVRKGEETPTLS 499 ++ V + + L Sbjct: 457 LEYFKVEPLLFASQIKKLE 475 >UniRef50_C0ERY0 Putative uncharacterized protein n=1 Tax=Eubacterium hallii DSM 3353 RepID=C0ERY0_9FIRM Length = 403 Score = 414 bits (1063), Expect = e-114, Method: Composition-based stats. Identities = 109/402 (27%), Positives = 181/402 (45%), Gaps = 11/402 (2%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K L+ ++ + +L E + NIY ++ R+ + AF++ G Sbjct: 5 KNKLVITEKEGVICYGYFQDGVPTELYCEPKEQQSILGNIYAARVERVAEGIHGAFLEIG 64 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFIS 121 + + L A P +D L G ++VQI K+ K T IS Sbjct: 65 DNQKCYYSLS--------AEQPVKLSPGHEDKLYGGDIILVQITKDAVKTKLPVGTGNIS 116 Query: 122 LAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQ 181 L G Y V + R GIS++I E E L E G+IVRT G S E L Sbjct: 117 LDGKYFVFTLTDKRT-GISKKIRNTVERERLETLLKKYTREEYGIIVRTNAAGVSEETLT 175 Query: 182 WDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELAR 241 +L +E + + A+ L+++E + ++ + + EIL D+ +V + Sbjct: 176 KELELLQLRYEELMRKAKIATGKTLLYREPPHYITLGKELPAKALDEILTDHAEVFTELK 235 Query: 242 QHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTA 301 ++ D + KI Y L++ Y+ E A+ + + L SG S+VI+ TEA+T Sbjct: 236 EYYKQTSESDTT-KISFYEDTYSLYNLYRFAHYYEEAYGKYIWLKSGASLVIEHTEAMTV 294 Query: 302 IDINSARATRGGDIEET-AFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ID+N+ + E+T + N EAA EIARQLRLR++ G+I+IDFI+M + + Sbjct: 295 IDVNTGSVLKKKKQEDTLFYQINREAAKEIARQLRLRNISGIIMIDFINMKDTAQKEKLL 354 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHH 402 + L ++DR + ++ L+EM+R ++ L E Sbjct: 355 SLLDSECKKDRVHCNVIDMTALNLVEMTRSKVRKPLHEQIRS 396 >UniRef50_B8IYX2 Ribonuclease, Rne/Rng family n=10 Tax=Desulfovibrionales RepID=B8IYX2_DESDA Length = 1076 Score = 413 bits (1061), Expect = e-113, Method: Composition-based stats. Identities = 185/471 (39%), Positives = 277/471 (58%), Gaps = 7/471 (1%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 RM I+ E++ VAL + +L + ++ + K NIYKG I I+ +L+AAFV YGA Sbjct: 600 RMFISVLPGEQVEVALTEDGQLLEYYLDMLHQRKIKGNIYKGVIHNIDTNLQAAFVSYGA 659 Query: 63 ERHGFLPLKEIAREYFPANYSA---HGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 ++GFL + EI EY+ ++ P I+ VL+ GQEV+VQ+ KE G+KGA LTT+ Sbjct: 660 GKNGFLQIDEIHPEYWLTHHEPAKGKKFPPIQKVLKAGQEVLVQVVKEPTGSKGAFLTTW 719 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAE 178 +SLAG +LVL P + G+SR+++ ++ R+ L+E + ++ +G+G+IVRT G + Sbjct: 720 LSLAGRFLVLTPGQEQI-GVSRKVDDEEERSRLREMMNGIDPGQGLGVIVRTVSAGTTKT 778 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 L+ DL + + W I+K A AP LI+QE + RA RDYL D+GEI +DN V + Sbjct: 779 TLKNDLQYLKRVWRDIRKKATEVTAPSLIYQEPGLSERAVRDYLTDDVGEIWVDNEDVAQ 838 Query: 239 LARQHIAALGRPDFSSKIKLYTG-EIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 R+ + L P S ++L++ ++ + + Q++ + REV LPSGG +V D TE Sbjct: 839 SIRETVNLLF-PRKSDLVRLHSDVRTSMWERFSLRRQLDQIYTREVLLPSGGRLVFDQTE 897 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 AL A+DINS + + G+ E A TN+EAA+ IAR L+LRD+GG +VIDFI+M +H Sbjct: 898 ALMAVDINSGKISGKGNFEAMAHKTNMEAAETIARHLKLRDIGGQVVIDFIEMRDKKHII 957 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 VE LR A++ DRAR + +S FGLLE+ RQR S + CP C GTG R+ E Sbjct: 958 EVEKTLRSAMKNDRARHDVGRMSAFGLLELVRQRTGSSALAITMEPCPACGGTGQRRNLE 1017 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDG 468 +L LR + E+ ++ +A YLLN KR ++ +E Sbjct: 1018 WQALQALRELRRMLRAESKEKCVYGTSAELALYLLNHKRDSLREMEQDYGK 1068 Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 38/374 (10%), Positives = 71/374 (18%), Gaps = 3/374 (0%) Query: 689 QAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEET 748 QE + + + R K ++ + + Sbjct: 2 TKDQETPVTETQNSGESGQKTSKPKSRASARGKSATASEATAGQAEKTSSRPSPASKTSS 61 Query: 749 VAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVS 808 ++ AP A + D ++ + Sbjct: 62 SSSPSADTPAPKASKPRAGKSTATKPVAASKSTAAKAGSAEDASAAKGAAKTKTVEKTAT 121 Query: 809 GQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQ 868 + + + + + A + + + Sbjct: 122 KAKSTAKPAVKSKAAAGSEAEGVEKTVKKAKAEEKTPGAASSAAAAPKRTAPKAATAKSK 181 Query: 869 PMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQV 928 T+ A S A + T A + P Sbjct: 182 QATTKSTGKPAAGTAKSGSEDAPADKTASAAAGAKTAKSATKATAGTAAPKAVAAKAPDA 241 Query: 929 ITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAE 988 + + P + A +V A P A+ A Sbjct: 242 KDAAPSVAQSPKSASQTGEKLPGADAAKAPADTAANKVQTAAPSAAAKDGTVAAGAPEAG 301 Query: 989 VETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATH 1048 + +A + ATA A +P AG Sbjct: 302 AKAASAARSRAATKVRAATARKKTTDKSADKSAAEGRVAPAQPKSTAAAATVAGAAEKIS 361 Query: 1049 HASA---APARPQP 1059 SA APA P P Sbjct: 362 PPSAGATAPAMPTP 375 >UniRef50_C5CAZ2 Ribonuclease, Rne/Rng family n=1 Tax=Micrococcus luteus NCTC 2665 RepID=C5CAZ2_MICLC Length = 1091 Score = 412 bits (1059), Expect = e-113, Method: Composition-based stats. Identities = 181/869 (20%), Positives = 324/869 (37%), Gaps = 28/869 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R ++ + + +++A+++ L + + + N+Y GK+ + PS+EAAFVD Sbjct: 226 VDRKMLVRQRDQRIQIAVLEDGVLAEHFVSHTTQDSMIGNVYLGKVQNVLPSMEAAFVDI 285 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + + I++ L+ G V+VQ+ K+ G+KGA LT+ + Sbjct: 286 GRGRNAVLYAGEVNWDAAQLDGKPR---KIENALKSGDTVLVQVTKDSVGHKGARLTSQV 342 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLV +P GISR++ +R+ LK+ L LP+ G+IVRTA G S + L Sbjct: 343 SLPGRYLVYVPGGSMT-GISRKLPDVERSRLKKILKD-HLPQDAGVIVRTAAEGTSEQEL 400 Query: 181 QWDLSFRLKHWEAIKKAAESRP--APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 Q D++ WE I++ A AP L++ E ++ ++ RD +D +L+ + Sbjct: 401 QNDINRLRAQWEGIQEKASGTKVLAPELLYAEPDLTIKTVRDVFNEDFSAMLVQGEATWD 460 Query: 239 LARQHIAALGRPDFSSKIKLY----TGEIPLFSHYQIESQIESAFQREVRLPSGGSIVID 294 ++ + P ++ + L++ ++++ Q+ A +R+V LPSGGS+VID Sbjct: 461 NIEAYVTYVA-PHLLGRLHHWVPEDHDGEDLYATHRVDEQLHKALERKVYLPSGGSLVID 519 Query: 295 STEALTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPV 353 TEA+T +D+N+ + T GG++EET NLEAA+EI RQLRLRD+GG+IVIDFIDM Sbjct: 520 RTEAMTVVDVNTGKFTGSGGNLEETVTKNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLE 579 Query: 354 RHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTV 413 ++ V RL E + +DR + Q++ ++ GL++M+R+R+ L E C C+G G + Sbjct: 580 ANRDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRMGTGLVEVFSETCEHCAGRGIL 639 Query: 414 RDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVI 473 + + E + + Sbjct: 640 IQDTPI--------------ERGRSGGEQRGEAEGRRRRRRRGDGEGEHAHAAAATTTGA 685 Query: 474 VPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFA 533 P D + +++ K+ E+ + + A Sbjct: 686 EPTDSEDERQRRERAEAARVALHSIAKASGKVAEDETPAQESAPAEQAADAAEDQAAEAV 745 Query: 534 MPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQ 593 +PA P+ ++ + ++ Sbjct: 746 EAASAGPAEAGQPAGADEEETPRRRRRRGRRRSRGRAEESGDTGAEDAARSHDDELAESA 805 Query: 594 PAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAET 653 P+ + + P + + E E E Q + Sbjct: 806 EQPRQTEEEAASKAPGAPEHQDPVVQAEEAVAAVAEAEADAEAEPTEDAAEQGDRPRRSR 865 Query: 654 RESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERV 713 R + A + + + R + +A E + E+ Sbjct: 866 RRRGGRGRSRRDGEAASTEADAEDQGAERATPSRHDVAGDAPEPEPAEDAPAPVPAEDVP 925 Query: 714 RPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVV 773 P + R ++ + VR A A + E P Sbjct: 926 APRRRRSRRASSDGVVRPAAGADASAERAADRMDAAPVETTEPSPEESTDATEVHEQPAA 985 Query: 774 AQTAPEQQEENNAD-NRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVAC 832 E A G + +P + + + R R S Sbjct: 986 PAAVEEAVMVEPAATEPTADGEQASAADAPTEAQAAPAPKSPRRRSRRAVSSDGVHVQVQ 1045 Query: 833 ASPELASGKVWIRYPIVRPQDVQVEEQRE 861 A+P A G + + + Sbjct: 1046 AAPGGAQGGRFTAAVAEASTPAEPQGAAP 1074 Score = 68.8 bits (166), Expect = 1e-09, Method: Composition-based stats. Identities = 51/432 (11%), Positives = 95/432 (21%) Query: 568 PGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRS 627 P R G + G + + +P + + R + Sbjct: 644 PIERGRSGGEQRGEAEGRRRRRRRGDGEGEHAHAAAATTTGAEPTDSEDERQRRERAEAA 703 Query: 628 ERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDK 687 S + + + Q + E A + A + A E + D+ Sbjct: 704 RVALHSIAKASGKVAEDETPAQESAPAEQAADAAEDQAAEAVEAASAGPAEAGQPAGADE 763 Query: 688 RQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEE 747 + + + + E + R +L + + EEA Sbjct: 764 EETPRRRRRRGRRRSRGRAEESGDTGAEDAARSHDDELAESAEQPRQTEEEAASKAPGAP 823 Query: 748 TVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRV 807 + E + +Q + +R G RSRR Sbjct: 824 EHQDPVVQAEEAVAAVAEAEADAEAEPTEDAAEQGDRPRRSRRRRGGRGRSRRDGEAAST 883 Query: 808 SGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHV 867 + + P++ + P + + P+ + V Sbjct: 884 EADAEDQGAERATPSRHDVAGDAPEPEPAEDAPAPVPAEDVPAPRRRRSRRASSDGVVRP 943 Query: 868 QPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQ 927 AA + E + QP V+ +P Sbjct: 944 AAGADASAERAADRMDAAPVETTEPSPEESTDATEVHEQPAAPAAVEEAVMVEPAATEPT 1003 Query: 928 VITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAA 987 E A QA P + + + V V AQ A A Sbjct: 1004 ADGEQASAADAPTEAQAAPAPKSPRRRSRRAVSSDGVHVQVQAAPGGAQGGRFTAAVAEA 1063 Query: 988 EVETVAAVEPEV 999 V Sbjct: 1064 STPAEPQGAAPV 1075 Score = 55.3 bits (131), Expect = 1e-05, Method: Composition-based stats. Identities = 45/366 (12%), Positives = 78/366 (21%), Gaps = 4/366 (1%) Query: 696 ALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIV 755 E+ EQ + RR++ + + + E+ Sbjct: 641 QDTPIERGRSGGEQRGEAEGRRRRRRRGDGEGEHAHAAAATTTGAEPTDSEDERQRRERA 700 Query: 756 QEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRY 815 + A + K V P Q+ D + + Sbjct: 701 EAARVALHSIAKASGKVAEDETPAQESAPAEQAADAAEDQAAEAVEAASAGPAEAGQPAG 760 Query: 816 RDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVP 875 DE + + R D ++ E EQ + ++ P Sbjct: 761 ADEEETPRRRRRRGRRRSRGRAEESGDTGAEDAARSHDDELAESAEQPRQTEEEAASKAP 820 Query: 876 VAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVA 935 A + V A AEP + E + A Sbjct: 821 GAPEHQDPVVQAEEAVAAVAEAEADAEAEPTEDAAEQGDRPRRSRRRRGGRGRSRRDGEA 880 Query: 936 VAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVA-A 994 + E + + D+ E P V P + + Sbjct: 881 ASTEADAEDQGAERATPSRHDVAGDAPEPEPAEDAPAPVPAEDVPAPRRRRSRRASSDGV 940 Query: 995 VEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAP 1054 V P + + A AP E + A A P Sbjct: 941 VRPAAGADASAERAADRMDAAPVETTEPSPEESTDATEVHEQPAAPAAVEEA---VMVEP 997 Query: 1055 ARPQPV 1060 A +P Sbjct: 998 AATEPT 1003 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 44/320 (13%), Positives = 68/320 (21%), Gaps = 9/320 (2%) Query: 751 AEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQ 810 + E R A D+ D R+ + L + Sbjct: 653 EQRGEAEGRRRRRRRGDGEGEHAHAAAATTTGAEPTDSEDERQRRERAEAARVALHSIAK 712 Query: 811 RRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPM 870 + ++ P Q P A + E + + + Q E+E + Sbjct: 713 ASGKVAEDETPAQESAPAEQAADAAEDQAAEAVEAASAGPAEAGQPAGADEEETPRRRRR 772 Query: 871 VTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVIT 930 E + + + AE + E + A + P V Sbjct: 773 RGRRRSRGRAEESGDTGAEDAARSHDDELAESAEQPRQTEEEAASKAPGAPEHQDPVVQA 832 Query: 931 ESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVE 990 E VA E AE AA A+ + Sbjct: 833 EEAVAAVAEAEADAEAEPTEDAAEQGDRPRRSRRRRGGRGRSRRDGEAASTEADAEDQGA 892 Query: 991 TVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRP---------TFAFEGKGAA 1041 A P APAP + P + A A Sbjct: 893 ERATPSRHDVAGDAPEPEPAEDAPAPVPAEDVPAPRRRRSRRASSDGVVRPAAGADASAE 952 Query: 1042 GGHTATHHASAAPARPQPVE 1061 A P P E Sbjct: 953 RAADRMDAAPVETTEPSPEE 972 >UniRef50_D1SD19 Ribonuclease, Rne/Rng family n=1 Tax=Micromonospora aurantiaca ATCC 27029 RepID=D1SD19_9ACTO Length = 1092 Score = 409 bits (1050), Expect = e-112, Method: Composition-based stats. Identities = 151/420 (35%), Positives = 246/420 (58%), Gaps = 7/420 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R+++ + + ++A+++ L + + N+Y GK+ + PS+EAAFVD Sbjct: 535 VDRVMVVRQRGDRTQIAVLEDGVLVEHYVTRNSSGTMAGNVYLGKVQNVLPSMEAAFVDI 594 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + +I+ LR G V+VQ+ K+ G+KGA LT+ I Sbjct: 595 GRGRNAVLYAGEVNWDATGLE---GRARSIEQALRSGDSVLVQVTKDPIGHKGARLTSHI 651 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +L+G +LV +PN A GISR++ +R L++ L L +P+G G+IVRTA G S + L Sbjct: 652 ALSGRHLVYVPNGN-ASGISRKLPDTERKRLRDVLKKL-VPDGAGVIVRTAAEGASEDEL 709 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 D+ WE I+ A AP L+++E ++++R RD +D E++I+ +L Sbjct: 710 ARDVKRLQAQWEDIQAKATEGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGEPAYDLV 769 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 +++ + PD ++++ + G +F+ Y+I+ QI R+V LPSGGS+VID TEA+T Sbjct: 770 ESYLSHVS-PDLVARLRRHAGVADVFAEYRIDEQILKGLDRKVFLPSGGSLVIDRTEAMT 828 Query: 301 AIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +D+N+ + T GG++EET NLEAA+EI RQLRLRDLGG++VIDFIDM ++ V Sbjct: 829 VVDVNTGKYTGSGGNLEETVTRNNLEAAEEIVRQLRLRDLGGIVVIDFIDMVLESNRELV 888 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 RL E + +DR + Q++ I+ GL++M+R+R+ L E+ C C G G + E + Sbjct: 889 LRRLTECLGRDRTKHQVTEITSLGLVQMTRKRIGAGLLEAFSETCECCKGRGVIIHTEPV 948 Score = 60.3 bits (144), Expect = 4e-07, Method: Composition-based stats. Identities = 57/488 (11%), Positives = 101/488 (20%) Query: 570 LLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSER 629 L + G + T + A + A + E + +R Sbjct: 2 LENEPEGGERTGAEPAGTTADSATTASGSAASATSAGAGGATTEGTVEGVAETKPPARKR 61 Query: 630 TEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQ 689 N+ + A + + T ++ E + + +RRR Sbjct: 62 ASRRKAAPLNQPEQTDAPVEASTTVTGSGESPQAEVLAPVAGELDTAPKTTRRRRKATPA 121 Query: 690 AQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETV 749 E ++ E RRK + V +++ A A V + Sbjct: 122 KAVEEPVAAAGVEAASEEVVPPVKVTRTRRRKATPAAETVAPDETTAAGQAPADGVIDGP 181 Query: 750 AAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSG 809 + P R ++ + A G + R+ Sbjct: 182 VSAPGGDLIAEGRADIDGGETAAPGEAVTAGTAAETAPQAPTGRRRATTSRTKAAGAGKA 241 Query: 810 QRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQP 869 + + A+ + R V Sbjct: 242 STGGIGETTGEDVEDAEDAEAEAMADASAAAARTEEVNLARSGGPADATGVVSTGAAVPR 301 Query: 870 MVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVI 929 E + + AP P +V E I AV + Sbjct: 302 AAEEPAETPPATSRRRRAALSAPTVLFMAPQPDEAPAVQVTYPAAEEPIEEAVETGRRRR 361 Query: 930 TESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEV 989 E + E E A+ + + A + Sbjct: 362 RGRREVEPVEAEVEPEVAEEELAAEAEETAEGDEDDETAAGRRRRRRGRRGRGRGKGGAD 421 Query: 990 ETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHH 1049 E E A R +R A E AA T Sbjct: 422 EVDDEDVEEPAAAEAEGEAEEPAEDEEAEGEGMTRRRRRRRRRGAGEADTAAEDGVPTVV 481 Query: 1050 ASAAPARP 1057 P +P Sbjct: 482 KIREPRKP 489 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 47/358 (13%), Positives = 86/358 (24%), Gaps = 14/358 (3%) Query: 707 TEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELV 766 + +P + A A E + PA + Sbjct: 5 EPEGGERTGAEPAGTTADSATTASGSAASATSAGAGGATTEGTVEGVAETKPPARKRASR 64 Query: 767 KVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPM 826 + P+ + E + +G P+ +P + + R + + Sbjct: 65 RKAAPLNQPEQTDAPVEASTTVTGSGESPQAEVLAPVAGELDTAPKTTRRRRKATPAKAV 124 Query: 827 PLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSA 886 VA A E AS +V + R + + E + P I+ VSA Sbjct: 125 EEPVAAAGVEAASEEVVPPVKVTRTRRRKATPAAETVAPDETTAAGQAPADGVIDGPVSA 184 Query: 887 PVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEP 946 P + +A P T A + + A + + Sbjct: 185 PGGDLIAEGRADIDGGETAAPGEAVTAGTAAETAPQAPTGRRRATTSRTKAAGAGKASTG 244 Query: 947 VVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHA 1006 + + AE + A+ +A + V V Sbjct: 245 GIGETTGEDVEDAEDAEAEAMADASAAAARTEEVNLARSGGPADATGVVSTGAAVPR--- 301 Query: 1007 TAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAA---PARPQPVE 1061 A E E P + +R + PA +P+E Sbjct: 302 --------AAEEPAETPPATSRRRRAALSAPTVLFMAPQPDEAPAVQVTYPAAEEPIE 351 >UniRef50_D0WNB8 Putative S1 RNA binding domain protein n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WNB8_9ACTO Length = 940 Score = 408 bits (1049), Expect = e-112, Method: Composition-based stats. Identities = 173/629 (27%), Positives = 280/629 (44%), Gaps = 24/629 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 +KR ++ Q ++A+++ L + + N+Y G++ + PS+EAAFVD Sbjct: 327 VKREMLIREQDGLNQIAVLEDDVLVEHYVARHTQVSMVGNVYLGRVQNVLPSMEAAFVDI 386 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ E I+ L+ G V+VQ+ K+ G+KGA LT I Sbjct: 387 GKGRNAVLYAGEVNWEAAGLEGRPR---RIEQALKSGDTVVVQVTKDPIGHKGARLTAQI 443 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LAG +LVL+P+ GISR++ +R LK L + +P G+IVRTA G S + L Sbjct: 444 TLAGRHLVLVPSGAMT-GISRKLPDKERQRLKRLLREI-VPAEHGVIVRTAAEGTSEDQL 501 Query: 181 QWDLSFRLKHWEAIKKAAESRP-APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + D+ K W+ I+ A++ AP L+ E + VR RD +D + I K Sbjct: 502 RADVERLAKTWQDIQTKAKNTKGAPMLLKGEPELAVRVVRDIFNEDFQSLKIQGAKAWRT 561 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 +++A L P+ S +++ +TG +F+ ++++ Q+ AF R+V LPSGG++VID TEA+ Sbjct: 562 ISEYVAELS-PELSQRLEHWTGASDIFASHRVDEQLAKAFDRKVWLPSGGTLVIDRTEAM 620 Query: 300 TAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 T ID+N+ + T GG +EET NLEAA+EI RQLRLRD+GG+IVIDFIDM ++ Sbjct: 621 TVIDVNTGKFTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLEANREL 680 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 V RL E + +DR R Q++ ++ GL++M+R+R+ L E+ VC C G G + + Sbjct: 681 VLRRLVECLGRDRTRHQVAEVTSLGLVQMTRKRVGQGLVEAFSTVCEACEGRGYIIHSNP 740 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 + E + + + AS +E + D V+ + Sbjct: 741 V--------ERGDGGADKRARNKQAAKQSASEPRDEGP--------KHDDVKAALHSIAA 784 Query: 479 METPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVP 538 + ++ S E A E+ + A+ Sbjct: 785 AAQSKHDENSEPGDSDSAQDSAKSADDAEGRTAEDGEDSKPGTAKARNRTKASAKKQGTK 844 Query: 539 PAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKA 598 A + A A E P + P Sbjct: 845 KAKGVQGKRGKAASVQAAEADEADGAGQADIPGEASEQGQAEFAERAESFSPGDAPEQGE 904 Query: 599 EAKPERQQDRRKPRQNNRRDRNERRDTRS 627 P + R + R+ + + Sbjct: 905 AGSPASESSRSRTRRVSSSGTITPSAGPA 933 >UniRef50_Q3A2X7 Ribonuclease E n=3 Tax=Bacteria RepID=Q3A2X7_PELCD Length = 926 Score = 407 bits (1046), Expect = e-111, Method: Composition-based stats. Identities = 292/927 (31%), Positives = 439/927 (47%), Gaps = 8/927 (0%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLINAT EE RVA+V+ L +LDIE G EQ K NIYK + R+E L+AAFVDYG Sbjct: 3 KKMLINATHPEEHRVAIVEDGILSELDIEISGKEQTKGNIYKAVVARVETGLQAAFVDYG 62 Query: 62 AERHGFLPLKEIAREYFPA---NYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 +ER GFL + EI +F A RP I D+LR GQE++VQI KEERG KGAALTT Sbjct: 63 SERLGFLQIGEIHPAFFKEAEGRVEAGKRPRINDILRRGQEILVQIVKEERGTKGAALTT 122 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSA 177 ++SL G Y+VLMP++ GISR+IE + DR +L+E + SLE+PE MG IVRTAG + Sbjct: 123 YLSLPGRYMVLMPDSD-TKGISRKIEKESDRKKLRELMDSLEIPEEMGYIVRTAGSTQKR 181 Query: 178 EALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 L+ D+ + L+ + I+ ++S AP LI++ESN+++R+ RDY D+ E+L+D+ KV Sbjct: 182 TDLKRDVDYLLRLFNKIQSLSDSTKAPSLIYKESNLVIRSIRDYFSDDMDEVLVDDAKVS 241 Query: 238 ELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 AR + P+++ +KL+ P+F+ YQIE QIES + +V LPSGGSIVIDSTE Sbjct: 242 TEARDFFQEV-MPEYAELVKLHQERRPIFARYQIEDQIESIGKNKVMLPSGGSIVIDSTE 300 Query: 298 ALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 AL AID+NS + +E TA+ TNLEAA E ARQLRLRDLGGL+VIDFIDM +H R Sbjct: 301 ALVAIDVNSGKMASEQGVEATAYKTNLEAAVETARQLRLRDLGGLVVIDFIDMRDRKHIR 360 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 +E L+EA++ D+AR+ I IS+FGLLEMSRQR+ +L +S VCP C+G+G ++ E Sbjct: 361 DIEKTLKEAMKTDKARVTIGRISQFGLLEMSRQRIKSALAAASFEVCPHCNGSGKIKTIE 420 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 + SL LR I K V A VP+ +ASYLLN KR + AIE + D + D Sbjct: 421 AQSLGFLRRIHTGLAKGRIGRVEATVPLDVASYLLNNKRVELMAIEQKNDVSIHIKGCPD 480 Query: 478 QMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 M R+ EET +Y+ ++ + + Sbjct: 481 YMNGQGEIDFHKREKEETQATAYIEASQVMSETNNAQQDSTTDTEEKPAKRRRRPRRRRK 540 Query: 538 PPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPK 597 A TP + + + + PA A+ ++ + + E TE P Sbjct: 541 SSAATPVSEPSTLTTESEEQQPAATQDAAESQPMATDTEVAREVSEKTAEPVSTEATEPA 600 Query: 598 AEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESR 657 + +P++ +R R + + + E + +A+ + + Sbjct: 601 EKTAEPASAAEEQPQKPSRPRSRSGRRKPATKKTEAKP-EAKPEAKPEAKPEAKPEAKPE 659 Query: 658 QQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQ 717 + E +A+ + +A + + + K +A+ EAK E E + E + Sbjct: 660 AKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKP-EAKPEAKPEAKP 718 Query: 718 PRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTA 777 + + + K + EA E A+P + P+ E + Sbjct: 719 EAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPKAKPKVESEAQSEAMPEAKP 778 Query: 778 PEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPEL 837 + + + + ++ T+ P A + + Sbjct: 779 KTTRRAPSRSRTKTKTKTETAESNTSATGTETDTPSEKDEKPAETKPPAKRARARRTTKP 838 Query: 838 ASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVE 897 + V P + + + + A ++ A V Sbjct: 839 TAKTATQASDDVSPAEKDETAKATETAAPKRRTRARKTTAKTVKSGDDASSVSASNAEEA 898 Query: 898 APVQVAEPQPEVVETTHPEVIAAAVTE 924 + + E A +E Sbjct: 899 EKKKPTRRPRKPAAKAVEESKKAETSE 925 Score = 97.7 bits (241), Expect = 2e-18, Method: Composition-based stats. Identities = 42/434 (9%), Positives = 99/434 (22%), Gaps = 2/434 (0%) Query: 607 DRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKA 666 R K + D+ + + +++ R+S V+E + Sbjct: 492 KREKEETQATAYIEASQVMSETNNAQQDSTTDTEEKPAKRRRRPRRRRKSSAATPVSEPS 551 Query: 667 RTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLN 726 E + + ++ + + A A V E++ + E + Sbjct: 552 TLTTESEEQQPAATQDAAESQPMATDTEVAREVSEKTAEPVSTEATEPAEKTAEPASAAE 611 Query: 727 QKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPL--PVVAQTAPEQQEEN 784 ++ + + + A+P + P + P P A + + Sbjct: 612 EQPQKPSRPRSRSGRRKPATKKTEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPE 671 Query: 785 NADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWI 844 P + + + + + P A PE Sbjct: 672 AKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPE 731 Query: 845 RYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAE 904 P +P+ + + E + P + + P + + Sbjct: 732 AKPEAKPEAKPEAKPEAKPEAKPEAKPKAKPKVESEAQSEAMPEAKPKTTRRAPSRSRTK 791 Query: 905 PQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETA 964 + + T+ P E + + + Sbjct: 792 TKTKTETAESNTSATGTETDTPSEKDEKPAETKPPAKRARARRTTKPTAKTATQASDDVS 851 Query: 965 EVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPR 1024 E + AAP A + + + + A P P P Sbjct: 852 PAEKDETAKATETAAPKRRTRARKTTAKTVKSGDDASSVSASNAEEAEKKKPTRRPRKPA 911 Query: 1025 HSDWQRPTFAFEGK 1038 + A + Sbjct: 912 AKAVEESKKAETSE 925 Score = 91.9 bits (226), Expect = 1e-16, Method: Composition-based stats. Identities = 46/435 (10%), Positives = 95/435 (21%), Gaps = 2/435 (0%) Query: 629 RTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKR 688 + E + + Q +T ++ + A+ + R+ + + Sbjct: 492 KREKEETQATAYIEASQVMSETNNAQQDSTTDTEEKPAKRRRRPRRRRKSSAATPVSEPS 551 Query: 689 QAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEET 748 E++ Q R + + V E + E P Sbjct: 552 TLTTESEEQQPAATQDAAESQPMATDTEVAREVSEKTAEPVSTEATEPAEKTAEPASAAE 611 Query: 749 VAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVS 808 + + A + + P + + Sbjct: 612 EQPQKPSRPRSRSGRRKPATKKTEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPE 671 Query: 809 GQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQ 868 + + + P A PE P +P+ + + E + Sbjct: 672 AKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPE 731 Query: 869 PMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQV 928 P A + P + A P +E Q E + P+ A + Sbjct: 732 AKPEAKPEAKPEAKPEAKPEAKPEAKPKAKPKVESEAQSEAMPEAKPKTTRRAPSRSRTK 791 Query: 929 ITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETA--EVVVAEPEVVAQPAAPVVAEVA 986 + P E+ E A + A+ A +V+ Sbjct: 792 TKTKTETAESNTSATGTETDTPSEKDEKPAETKPPAKRARARRTTKPTAKTATQASDDVS 851 Query: 987 AEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTA 1046 + A E A T A + +A S + A Sbjct: 852 PAEKDETAKATETAAPKRRTRARKTTAKTVKSGDDASSVSASNAEEAEKKKPTRRPRKPA 911 Query: 1047 THHASAAPARPQPVE 1061 + + Sbjct: 912 AKAVEESKKAETSED 926 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 55/394 (13%), Positives = 94/394 (23%), Gaps = 3/394 (0%) Query: 664 EKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQR 723 D + + E + Q E + + E + +R R + RRK Sbjct: 483 NGQGEIDFHKREKEETQATAYIEASQVMSETNNAQQDSTTDTEEKPAKRRRRPRRRRKSS 542 Query: 724 QLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEE 783 E P + A + E+ + V+ A E E+ Sbjct: 543 AATPVSEPSTLTTESEEQQPAATQDAAESQPMATDTEVAREVSEKTAEPVSTEATEPAEK 602 Query: 784 NNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVW 843 P++ R ++ + P A PE Sbjct: 603 TAEPASAAEEQPQKPSRPRSRSGRRKPATKKTEAKPEAKPEAKPEAKPEAKPEAKPEAKP 662 Query: 844 IRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVA 903 P +P+ + + E + P A + P + A P Sbjct: 663 EAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKP 722 Query: 904 EPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVET 963 E +PE PE A P+ E+ E +A+P VE + ++ + E Sbjct: 723 EAKPEAKPEAKPEAKPEAK---PEAKPEAKPEAKPEAKPKAKPKVESEAQSEAMPEAKPK 779 Query: 964 AEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAP 1023 AE P E T P + + Sbjct: 780 TTRRAPSRSRTKTKTKTETAESNTSATGTETDTPSEKDEKPAETKPPAKRARARRTTKPT 839 Query: 1024 RHSDWQRPTFAFEGKGAAGGHTATHHASAAPARP 1057 + Q + A R Sbjct: 840 AKTATQASDDVSPAEKDETAKATETAAPKRRTRA 873 Score = 88.4 bits (217), Expect = 1e-15, Method: Composition-based stats. Identities = 46/434 (10%), Positives = 105/434 (24%), Gaps = 3/434 (0%) Query: 631 EGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQA 690 E ++ + + E +++ E T+ + Q + +++ Sbjct: 466 EQKNDVSIHIKGCPDYMNGQGEIDFHKREKEETQATAYIEASQVMSETNNAQQDSTTDTE 525 Query: 691 QQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVA 750 ++ AK + + + P + + + + ++ V V+ Sbjct: 526 EKPAKRRRRPRRRRKSSAATPVSEPSTLTTESEEQQPAATQDAAESQPMATDTEVAREVS 585 Query: 751 AEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQ 810 + + K P A Q+ + + + + Sbjct: 586 EKTAEPVSTEATEPAEKTAEPASAAEEQPQKPSRPRSRSGRRKPATKKTEAKPEAKPEAK 645 Query: 811 RRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPM 870 + + P A PE P +P+ + + E + Sbjct: 646 PEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAK 705 Query: 871 VTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVIT 930 P A + P + A P E +PE PE A + + Sbjct: 706 PEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPEAKPKAKPKVE 765 Query: 931 ESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVE 990 + A A+ P + ETAE + + + A Sbjct: 766 SEAQSEAMPEAKPKTTRRAPSRSRTKTKTKTETAESNTSATGTETDTPSEKDEKPAETKP 825 Query: 991 TVAAVEP---EVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTAT 1047 A +PA + + + A + Sbjct: 826 PAKRARARRTTKPTAKTATQASDDVSPAEKDETAKATETAAPKRRTRARKTTAKTVKSGD 885 Query: 1048 HHASAAPARPQPVE 1061 +S + + + E Sbjct: 886 DASSVSASNAEEAE 899 >UniRef50_C7QYR2 Ribonuclease, Rne/Rng family n=1 Tax=Jonesia denitrificans DSM 20603 RepID=C7QYR2_JONDD Length = 1018 Score = 405 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 159/577 (27%), Positives = 262/577 (45%), Gaps = 7/577 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R ++ ++A+++ L + + N+Y G++ + PS+EAAFVD Sbjct: 446 VDRSMVVREVAGRTQIAVLEDGILVEHYVSQQEQASIAGNVYLGRVQNVLPSMEAAFVDI 505 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + I++ L+ G V+VQ+ K+ G+KGA LT+ I Sbjct: 506 GKGRNAVLYAGEVNWDVHGIEGQPR---RIEEALKSGDSVLVQVTKDPIGHKGARLTSQI 562 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LAG YLV +P GISR++ +R LK L L + EG G+IVRTA G S L Sbjct: 563 TLAGRYLVYVPGGGMT-GISRKLPDTERARLKRILKEL-VDEGSGVIVRTAAEGASETEL 620 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 + D+ K W AI+K ++ AP L+ E ++ +R RD D ++ + + Sbjct: 621 RADVERLKKQWAAIEKKRKNANAPALLQGEPDLAIRVVRDIFNDDFTQLSVQGDQAWGEI 680 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 +++ L PD ++K+ +T E +F+ +I+ Q+ R+V LPSGGS+VID TEA+T Sbjct: 681 SEYVGDLA-PDLANKMSRWTSEDDIFAAARIDEQLAKGLDRKVYLPSGGSLVIDRTEAMT 739 Query: 301 AIDINSARATRGGD-IEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 ID+N+ + T G +EET NLEAA+EI RQLRLRD+GG+IVIDFIDM ++ V Sbjct: 740 VIDVNTGKFTGTGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRDLV 799 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 RL E + +DR + Q++ ++ GL++M+R+R+ L E+ C CSG G + + Sbjct: 800 LRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLIEAFSTACDHCSGRGYTIHTDPV 859 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 + + + + + + + + + + + Sbjct: 860 ERHGHAPSPQSSNTQEGESKRSKRRRSKEAKEPKDTVDTHTSADKSAPDTPQDPATDPSV 919 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPP 539 L + H + + E A P+ P Sbjct: 920 REDVKTALAAIAAAAAHAHDAQHGEDHSDDAPTVTSASAGGTDSTEHTAPTGSPEPETAP 979 Query: 540 APTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFG 576 T E + P + + PA Sbjct: 980 QVTSEEQSEPAPKKTTRTRSRRASRPAGSSAKDATRE 1016 >UniRef50_B8DVT8 Ribonuclease G n=7 Tax=Bifidobacterium RepID=B8DVT8_BIFA0 Length = 1028 Score = 405 bits (1039), Expect = e-111, Method: Composition-based stats. Identities = 152/559 (27%), Positives = 263/559 (47%), Gaps = 14/559 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R+++ + ++++++ L + + NIY G++ + PS+EAAFVD Sbjct: 476 VDRLMVVRERGRHTQISVIEDNVLVEHYVSDIQEVATVGNIYLGRVQNVLPSMEAAFVDI 535 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+G L E+ + I+ + G V+VQ+ K+ G+KGA LT+ + Sbjct: 536 GQARNGVLYAGEVNWDATRLEGQPR---RIELAFKSGDPVLVQVTKDPIGHKGARLTSQV 592 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LAG +LVL+P+ G+SR++ +R LK ++ + P+ MG+I+RTA G S EA+ Sbjct: 593 TLAGRFLVLVPSGGMT-GVSRKLSDRERNRLKSIVSKIA-PKDMGVIIRTAAEGASEEAI 650 Query: 181 QWDLSFRLKHWEAIKKA---AESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVL 237 DL W I++ P L+ E +V +R RD D +++++ V Sbjct: 651 AKDLEGLTNQWAEIQRKREEFLHGKRPKLLQGEPDVAIRVVRDIFNDDFNKMIVEGDGVY 710 Query: 238 ELARQHIAALGRPDFSSKIKLYT----GEIPLFSHYQIESQIESAFQREVRLPSGGSIVI 293 +++ + PD +K++ + G +F +QI+SQ+ +R+V LPSGGSIVI Sbjct: 711 HRIEEYLDHMA-PDLHNKLERWDPEEHGGKDVFDRWQIDSQLRKGMERQVYLPSGGSIVI 769 Query: 294 DSTEALTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTP 352 D TEA+T ID+N+ R G +EET NLEA++EIARQLRLRD+GG+++ID++DM Sbjct: 770 DRTEAMTTIDVNTGRFIGKGKSLEETVTRCNLEASEEIARQLRLRDIGGMVMIDYVDMVM 829 Query: 353 VRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGT 412 ++ V RL E + +DR + Q++ ++ GL++M+R+R+ L E+ CP C G G Sbjct: 830 PANRDLVLRRLVECLARDRTKHQVAEVTSLGLVQMTRKRIGQGLVEAFSEECPECKGRGF 889 Query: 413 VRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCV 472 + +E + + + + +AV A + Sbjct: 890 IVHDEPTISAEFDDPYAMKGGDPFVRTNKHGHGTPEVHAPKGSSAAVKAKLAQIAAAAVA 949 Query: 473 IVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATF 532 + E E + + A + + + ++ E + Sbjct: 950 ANVAAEAEESVEAPAADTTEETAKVDVAVESTVESAAESAGNAGDTERVEQVEGEVIDDA 1009 Query: 533 AMPDVPPAPTPAEPAAPVV 551 A E AA Sbjct: 1010 EQSADDAAAVTVEDAAEES 1028 >UniRef50_A8LRP5 Ribonuclease n=35 Tax=Rhodobacterales RepID=A8LRP5_DINSH Length = 1026 Score = 404 bits (1038), Expect = e-111, Method: Composition-based stats. Identities = 216/684 (31%), Positives = 324/684 (47%), Gaps = 6/684 (0%) Query: 71 KEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLM 130 +++A E R I++V++ Q ++VQ+ KEERGNKGAALTT++SLAG Y VLM Sbjct: 339 EDVAEEIRRPRQRRERRYKIQEVIKVRQVLLVQVVKEERGNKGAALTTYLSLAGRYCVLM 398 Query: 131 PNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLK 189 PN R GGISR+I DR +LKE + +E+P G GLIVRTAG ++ ++ D + + Sbjct: 399 PNTARGGGISRKITNAVDRKKLKEIASEIEVPRGAGLIVRTAGAKRTKTEIKRDYDYLKR 458 Query: 190 HWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGR 249 WE I+ AP I++E N+I R+ RD +DI E+L++ + +A+ + L Sbjct: 459 LWEQIRDLTLKSIAPAPIYEEGNLIKRSIRDLYSRDIDEVLVEGEEGYRVAKDFMKML-M 517 Query: 250 PDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARA 309 P + +KLY +PLF+ YQ+ES + F V+L SGG +VI TEAL AID+NS RA Sbjct: 518 PSHAKNVKLYNENLPLFARYQVESYLAGMFNPTVQLKSGGYLVIGVTEALVAIDVNSGRA 577 Query: 310 TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQ 369 T+ G IEETA TNLEAA+E+ARQ+RLRDL GLIVIDFIDM R+ AVE RL++ ++ Sbjct: 578 TKEGSIEETALKTNLEAAEEVARQVRLRDLAGLIVIDFIDMEERRNNTAVEKRLKDKLKT 637 Query: 370 DRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEE 429 DRARIQ+ IS FGLLEMSRQRL P + E + C C GTG +R + SL+LSI+R +EE Sbjct: 638 DRARIQVGRISGFGLLEMSRQRLRPGMLEITTQPCNHCHGTGLIRSDNSLALSIVRALEE 697 Query: 430 EALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRV 489 E ++ +EV PV + +YL NEKR + IE R G+ + ++++ + + + Sbjct: 698 EGMRRRVREVLVKAPVNVINYLFNEKREHIALIEGRY-GLSVRLEASNELSGADFTIDKF 756 Query: 490 RKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAP 549 + + + +E + + A Sbjct: 757 KTATRKVVELDAPVVSIDTSGVDEAEIVEEPDEEEADTETEAETAATEETSEEQAPRKRR 816 Query: 550 VVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRR 609 + T + A A S + + + A + + Sbjct: 817 RRRRRSRRGGGTENGESNGDGSDEAQSAADADSSDQADISEEAESSQPAVEAEAEEAPKP 876 Query: 610 KPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTA 669 K R+ RR + + + + ++ A Sbjct: 877 KRRRRRRRKSDAEEGEAAPDGDAVSEDVSAPEPAPTPEPVAEAKADAPAAEAEPVAEAEA 936 Query: 670 DEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKV 729 + A + + A+ E +T EE +PV + + Sbjct: 937 PVEPAESEAPAPEVDPTPETAETAPVEHGDE---ASDTTDEETGQPVSEEASEAEAEDPQ 993 Query: 730 RYEQSVAEEAVVAPVVEETVAAEP 753 E +AE A A ++ Sbjct: 994 AVEPELAEAANEAAPAQDDDTKPK 1017 Score = 86.1 bits (211), Expect = 7e-15, Method: Composition-based stats. Identities = 42/92 (45%), Positives = 57/92 (61%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K+MLI+AT EE RV +VDG ++ + D ES Q NIY K+TR+EPSL+AAFVDYG Sbjct: 3 KKMLIDATHAEETRVVVVDGTKVEEFDFESVNKRQLAGNIYLAKVTRVEPSLQAAFVDYG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKDV 93 RHGFL EI +Y+ + +++ Sbjct: 63 GNRHGFLAFSEIHPDYYQIPVADREALLAEEM 94 >UniRef50_A8M0Z2 Ribonuclease, Rne/Rng family n=2 Tax=Salinispora RepID=A8M0Z2_SALAI Length = 1058 Score = 403 bits (1036), Expect = e-110, Method: Composition-based stats. Identities = 158/549 (28%), Positives = 266/549 (48%), Gaps = 18/549 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R++ + + ++A+++ L + + N+Y GK+ + PS+EAAFVD Sbjct: 508 VDRVMAVRQRGDRTQIAVLEDGVLVEHYVTRNSSTTMAGNVYLGKVQNVLPSMEAAFVDI 567 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + +I+ L+ G V+VQ+ K+ G+KGA LT+ + Sbjct: 568 GRGRNAVLYAGEVNWDATGLE---GRARSIEQALKSGDSVLVQVTKDPIGHKGARLTSHV 624 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +L+G +LV +P GISR++ ++R L++AL L +PEG G+IVRTA G S + L Sbjct: 625 ALSGRHLVYVPGGN-TSGISRKLPDNERRRLRDALKKL-VPEGAGVIVRTAAEGASEDEL 682 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 D+ WE I+ A AP L+++E ++++R RD +D E++I+ ++ Sbjct: 683 ARDVKRLQAQWEDIQAKAGKGGAPVLLYEEPDLVIRVVRDLFNEDFRELVIEGEGAYDMV 742 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 +++ + PD ++++ + G + +F+ Y+I+ QI R+V LPSGG +VID TEA+T Sbjct: 743 ESYLSHVS-PDLVARLRRHVGTVDVFTEYRIDEQILKGLDRKVFLPSGGHLVIDRTEAMT 801 Query: 301 AIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +D+N+ + T GG++EET NLEAA+EI RQLRLRD+GG++VIDFIDM ++ V Sbjct: 802 VVDVNTGKYTGAGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIVVIDFIDMVLESNRELV 861 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 RL E + +DR + Q++ I+ GL++M+R+R+ L E+ C C G G + E + Sbjct: 862 LRRLTECLGRDRTKHQVTEITSLGLVQMTRKRIGAGLLEAFSETCDCCKGRGLIVHTEPV 921 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 K T V ++ R + +V ++ Sbjct: 922 -----------PEKPRTGGTGERVKAVASAETGTAPRRRTRKGSVTAERTSVEVVEGERD 970 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPP 539 M L P+ A + + PA Sbjct: 971 AGTTDTPGAAPTTPGADYYDTMGYDLSRYETETPAAPSVAASQPGDDPARLAAPDDPDAV 1030 Query: 540 APTPAEPAA 548 E Sbjct: 1031 GGDDGEEPE 1039 Score = 54.2 bits (128), Expect = 3e-05, Method: Composition-based stats. Identities = 36/370 (9%), Positives = 69/370 (18%), Gaps = 5/370 (1%) Query: 642 NRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEE 701 + + AE A + + + + E Sbjct: 3 ANEPEGGERTGFHPDGETAEYHAGDGGAPAKTTSAEGGEAATGELAGSSPEPVGPATSEA 62 Query: 702 QSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAP 761 E E V+ R +++ R EQ+ A A AP Sbjct: 63 AGAGVAELGEPAARVRKRATRKRATPVNRPEQTEAPIEAGTAAASGAGEAPQAEVLAPIA 122 Query: 762 RTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYP 821 + A + + P + + +++ Sbjct: 123 GDGEPATKSTRRRRKATTAKAAEESVTVSGAEETAADIVPPVKVTRTRRKKTAPAPTEPA 182 Query: 822 TQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIE 881 + P V A+ + + V E++ P Sbjct: 183 ATTAEPDAVPAGPAPTAAERESVAAGPAATAAGPVAGPAERKAESAPPASAAAGEVPPGA 242 Query: 882 PVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTH-----PEVIAAAVTEQPQVITESDVAV 936 V V + + V + P +P Sbjct: 243 AVAGPEQQPLRPRVRSSAEPERPARRRAVLSAPTVLFMPPQPEEPAPARPAEERVETSRR 302 Query: 937 AQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVE 996 + EP E + + E + E E Sbjct: 303 RRRGRRDVEPTTEVETGEPREADEEAREVRKPRETAEPRKTEEAEEPRETEEAEEPGETP 362 Query: 997 PEVTVEHNHA 1006 E A Sbjct: 363 EASEDEDETA 372 Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 45/311 (14%), Positives = 64/311 (20%), Gaps = 4/311 (1%) Query: 744 VVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPR 803 +T +AE + P ++ A E R R +P Sbjct: 30 APAKTTSAEGGEAATGELAGSSPEPVGPATSEAAGAGVAELGEPAARVRKRATRKRATPV 89 Query: 804 HLRVSGQRRRRYRDERYPTQSPMPLTVACA----SPELASGKVWIRYPIVRPQDVQVEEQ 859 + + P A E A+ R + + Sbjct: 90 NRPEQTEAPIEAGTAAASGAGEAPQAEVLAPIAGDGEPATKSTRRRRKATTAKAAEESVT 149 Query: 860 REQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIA 919 E +V V V + E A E A P P E Sbjct: 150 VSGAEETAADIVPPVKVTRTRRKKTAPAPTEPAATTAEPDAVPAGPAPTAAERESVAAGP 209 Query: 920 AAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAA 979 AA P A + A A V P A E+ V + Sbjct: 210 AATAAGPVAGPAERKAESAPPASAAAGEVPPGAAVAGPEQQPLRPRVRSSAEPERPARRR 269 Query: 980 PVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKG 1039 V++ EP R E + P A E Sbjct: 270 AVLSAPTVLFMPPQPEEPAPARPAEERVETSRRRRRGRRDVEPTTEVETGEPREADEEAR 329 Query: 1040 AAGGHTATHHA 1050 T Sbjct: 330 EVRKPRETAEP 340 Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 37/370 (10%), Positives = 68/370 (18%), Gaps = 3/370 (0%) Query: 676 RRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSV 735 E + A+ + + +T E Sbjct: 3 ANEPEGGERTGFHPDGETAEYHAGDGGAPAKTTSAEGGEAATGELAGSSPEPVGPATSEA 62 Query: 736 AEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMP 795 A V + ++ P + P+ A TA + Sbjct: 63 AGAGVAELGEPAARVRKRATRKRATPVNRPEQTEAPIEAGTAAASGAGEAPQAEVLAPIA 122 Query: 796 -RRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDV 854 + R + +E P + + + Sbjct: 123 GDGEPATKSTRRRRKATTAKAAEESVTVSGAEETAADIVPPVKVTRTRRKKTAPAPTEPA 182 Query: 855 QVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQ--PEVVET 912 + + P E AA +A V A A Sbjct: 183 ATTAEPDAVPAGPAPTAAERESVAAGPAATAAGPVAGPAERKAESAPPASAAAGEVPPGA 242 Query: 913 THPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPE 972 + + + E + + A V+ + + E V Sbjct: 243 AVAGPEQQPLRPRVRSSAEPERPARRRAVLSAPTVLFMPPQPEEPAPARPAEERVETSRR 302 Query: 973 VVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPT 1032 E A E V TA + E E + Sbjct: 303 RRRGRRDVEPTTEVETGEPREADEEAREVRKPRETAEPRKTEEAEEPRETEEAEEPGETP 362 Query: 1033 FAFEGKGAAG 1042 A E + Sbjct: 363 EASEDEDETA 372 Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 45/294 (15%), Positives = 63/294 (21%), Gaps = 6/294 (2%) Query: 770 LPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLT 829 P + + A+ G S + E + Sbjct: 5 EPEGGERTGFHPDGETAEYHAGDGGAPAKTTSAEGGEAATGELAGSSPEPVGPATSEAAG 64 Query: 830 VACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVV 889 A + +V R R V EQ E + A E + Sbjct: 65 AGVAELGEPAARVRKRATRKRATPVNRPEQTEAPIEAGTAAASGAGEAPQAEVLAPIAGD 124 Query: 890 EEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVE 949 E A + A E+ + + + + EP Sbjct: 125 GEPATKSTRRRRKATTAKAAEESVTVSGAEETAADIVPPVKVTRTRRKKTAPAPTEPAAT 184 Query: 950 PQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAP 1009 E A TA + A AA VA A A E A Sbjct: 185 TAEPDAVPAGPAPTAAERESVAAGPAATAAGPVAGPAERKAESAPPASAAAGEVPPGAAV 244 Query: 1010 MTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTAT--HHASAAPARPQPVE 1061 PE P PR P + T PA +P E Sbjct: 245 A----GPEQQPLRPRVRSSAEPERPARRRAVLSAPTVLFMPPQPEEPAPARPAE 294 >UniRef50_C3PI06 Ribonuclease E n=3 Tax=Corynebacterium RepID=C3PI06_CORA7 Length = 1062 Score = 403 bits (1035), Expect = e-110, Method: Composition-based stats. Identities = 185/712 (25%), Positives = 309/712 (43%), Gaps = 43/712 (6%) Query: 14 LRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEI 73 +V +++ L + + + H + NIY G++ + PS+EAAFVD G R+G L +I Sbjct: 368 TQVGVLEDDLLVEHFVTTETHPSQIGNIYLGRVQNVLPSMEAAFVDIGQGRNGVLYAGDI 427 Query: 74 AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 + +++ L+ G +V+VQ+ K+ G+KGA LTT ISLAG +LV +P Sbjct: 428 DWRALGIGGRSR---KVENALKSGDQVLVQVAKDPIGHKGARLTTQISLAGRFLVYVPGG 484 Query: 134 PRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEA 193 R+ GISR++ +R LK L + +P G I+RTA S E + D++ WE Sbjct: 485 -RSAGISRKLPAPERKRLKGILERV-IPGDGGAIIRTAAENVSEEDIASDVNRLHSLWED 542 Query: 194 IKKAAESRPA-----PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALG 248 I A A P +++E +++++ RD +D +++D + ++ ++ Sbjct: 543 ISARAAHEKATKGAKPVTLYEEPDLLIKVVRDLFNEDFSTLVVDGKRSYNTVSAYVDSMA 602 Query: 249 RPDFSSKIKLYT----GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDI 304 D + ++ Y FS Y+I+ Q++ A R+V LPSGG++VID TEA+T ID+ Sbjct: 603 H-DLADRVVRYDAREHDGEDAFSAYRIDEQLQKALGRKVWLPSGGTLVIDRTEAMTVIDV 661 Query: 305 NSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL 363 N+ + T GG++EET NLEAA+EI RQ+RLRD+GG+IV+DFIDM +Q V RL Sbjct: 662 NTGKFTGSGGNLEETVTRNNLEAAEEIVRQMRLRDIGGMIVVDFIDMVLPENQDLVLRRL 721 Query: 364 REAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSI 423 +EA+ +DR R Q+S ++ GL++M+R+R+ L E+ C C G G + + Sbjct: 722 KEALGRDRTRHQVSEVTSLGLVQMTRKRVGTGLIETFSTECEACHGRGIIIHEYP----V 777 Query: 424 LRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPH 483 EEE K + E+R+ + VR M Sbjct: 778 DEDPEEENSKPQRRG-------------RKERRAPQRDPKKHPAAVR--------MHRDD 816 Query: 484 YHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTP 543 + S EE +A + E + P+ ++ + + Sbjct: 817 EDAAAEHETATEKETSRDDDSSLEELVANVVVVDEDEPETPDSASIGYAVAESLDAKRSK 876 Query: 544 AEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPE 603 +P + Q S A + + + + Sbjct: 877 PKPKSKAKRSRKPRRATRTFREPQREETSEGSRAKHGKRDEHADAEKASPQRSEQTYEEA 936 Query: 604 RQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVT 663 + + PR+ R N R D R +R + ++E Q E + R+ AE Sbjct: 937 VEAFEKSPRRKRRTRGNSRSDIRPKREDF--AQDETSAKDAQLATSKKEAKAERKGAEPG 994 Query: 664 EKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRP 715 E + RR R+ + + E Q + + Q + Sbjct: 995 ENTSVRATRSRGRRRVVRKMAQSQSTPASNDREQGSEAQRRESSAQTTASKA 1046 >UniRef50_C8NQN5 Ribonuclease E n=5 Tax=Corynebacterium RepID=C8NQN5_COREF Length = 1148 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 198/820 (24%), Positives = 328/820 (40%), Gaps = 39/820 (4%) Query: 1 MKRMLINATQ------QEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLE 54 M+R +I + +V +++ L + + S NIY G++ + PS+E Sbjct: 350 MERRMIVRERQRTDGTGLVTQVGVLEDDLLVEQFVTSDSQSSMVGNIYLGRVQNVLPSME 409 Query: 55 AAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGA 114 AAF+D G R+G L E+ + I+ L+ GQ+V+VQ+ K+ G+KGA Sbjct: 410 AAFIDIGKGRNGVLYAGEVDWKAAGLGGRGR---RIEQALKSGQKVLVQVTKDPVGHKGA 466 Query: 115 ALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVG 174 LTT ISLAG YLV +P R+ GISR++ G +R LKE L + P+G G I+RTA G Sbjct: 467 RLTTQISLAGRYLVYVPGG-RSAGISRKLPGPERKRLKEILGRVVPPQG-GTIIRTAAEG 524 Query: 175 KSAEALQWDLSFRLKHWEAIKKAAESRPA-----PFLIHQESNVIVRAFRDYLRQDIGEI 229 S E + D++ WE I++ + P +++E +++V+ RD +D + Sbjct: 525 VSEENIAADVNRLHTLWEQIQERTKQEKKSRNTRPVTMYEEPDMLVKVIRDLFNEDFTSL 584 Query: 230 LIDNPKVLELARQHIAALGRPDFSSKIKLYT----GEIPLFSHYQIESQIESAFQREVRL 285 ++D + R +I ++ PD S+++ + F + + +Q+E A R+V L Sbjct: 585 IVDGDRAWNTVRAYIQSVA-PDLVSRVEHFDRADYDGKDAFEAFGLNTQLEEAMSRKVNL 643 Query: 286 PSGGSIVIDSTEALTAIDINSARATRGG--DIEETAFNTNLEAADEIARQLRLRDLGGLI 343 PSGGS++ID TEA+T IDIN+ R G ++EET N+EAA+EI RQLRLRD+GG+I Sbjct: 644 PSGGSLIIDKTEAMTVIDINTGRYVGKGVGNLEETVTLNNIEAAEEIVRQLRLRDIGGMI 703 Query: 344 VIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHV 403 VIDFIDM ++ V RL EA+ DR R Q+S ++ GL++M+R+R+ L E+ Sbjct: 704 VIDFIDMVLPENRDLVLRRLNEALENDRTRHQVSEVTSLGLVQMTRKRIGAGLLETFSSE 763 Query: 404 CPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIE 463 C C+G G V + + +N E A N++ + Sbjct: 764 CEHCAGRGLVIHPDPV--------------DNVDERVEAKAEERARRHKNQQEDSRPQQP 809 Query: 464 TRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKR 523 R ++V + + K E S ++ E+ + A+ Sbjct: 810 VRDPARHPMVVAMQDLVED--EDHDLDKEFEDLAASVIITDDAEDTADTAGTVDTADDTE 867 Query: 524 PEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFS 583 PE A + + P P P A A A+ Sbjct: 868 PEITADEVISTVEPEEGPRRRARRRRGRQQETPETPVEPEATGDTTADDIAAIAAAAVDI 927 Query: 584 GGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNR 643 E A + RR TR + E+ ++ Sbjct: 928 ADAEDPDEPSGANYVSDAAGAATSYEQALAEFEASPRRRRATRGNSRSDHAPKPEDFKSE 987 Query: 644 RQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQS 703 ++ E +AE + R+ ++ R + + S Sbjct: 988 PARREVEPIPVEEIGEAEEKPRRRSRGRGRSQRPAPVVETTVETAVEDIPEETPRRNRPS 1047 Query: 704 VQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRT 763 R + R +R + + +P + R Sbjct: 1048 EVAASAPSRPGRGRRRAVRRSSGHIETLDDATPTPITPSPADKAGDGEREASPSKGRRRR 1107 Query: 764 ELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPR 803 + +++ A +G R +R+ R Sbjct: 1108 RRAIRVSGKALSQSTAEKQPEPAAPAGSGRRRRGTRKPQR 1147 Score = 55.7 bits (132), Expect = 1e-05, Method: Composition-based stats. Identities = 38/358 (10%), Positives = 75/358 (20%) Query: 648 QQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQET 707 + + R +A+ E+AR QQ R + R+ + + L +E + Sbjct: 776 PDPVDNVDERVEAKAEERARRHKNQQEDSRPQQPVRDPARHPMVVAMQDLVEDEDHDLDK 835 Query: 708 EQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVK 767 E E+ V + + E EP R + Sbjct: 836 EFEDLAASVIITDDAEDTADTAGTVDTADDTEPEITADEVISTVEPEEGPRRRARRRRGR 895 Query: 768 VPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMP 827 PE + AD+ T Sbjct: 896 QQETPETPVEPEATGDTTADDIAAIAAAAVDIADAEDPDEPSGANYVSDAAGAATSYEQA 955 Query: 828 LTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAP 887 L ASP P+ + + + EV P+ Sbjct: 956 LAEFEASPRRRRATRGNSRSDHAPKPEDFKSEPARREVEPIPVEEIGEAEEKPRRRSRGR 1015 Query: 888 VVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPV 947 + V + ET + P + + E + Sbjct: 1016 GRSQRPAPVVETTVETAVEDIPEETPRRNRPSEVAASAPSRPGRGRRRAVRRSSGHIETL 1075 Query: 948 VEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNH 1005 + + + + V+ + + + E + Sbjct: 1076 DDATPTPITPSPADKAGDGEREASPSKGRRRRRRAIRVSGKALSQSTAEKQPEPAAPA 1133 Score = 53.0 bits (125), Expect = 6e-05, Method: Composition-based stats. Identities = 43/371 (11%), Positives = 87/371 (23%), Gaps = 7/371 (1%) Query: 613 QNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQ 672 + + +ER + ++E ++ +Q + A ++ E ++ Sbjct: 776 PDPVDNVDERVEAKAEERARRHKNQQEDSRPQQPVRDPARHPMVVAMQDLVEDEDHDLDK 835 Query: 673 QAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYE 732 + S DD A ++ + + E +E + V+P R+ ++ R Sbjct: 836 EFEDLAASVIITDDAEDTADTAGTVDTADDTEPEITADEVISTVEPEEGPRRRARRRRGR 895 Query: 733 QSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPV-------VAQTAPEQQEENN 785 Q E V P A+ I A A E Sbjct: 896 QQETPETPVEPEATGDTTADDIAAIAAAAVDIADAEDPDEPSGANYVSDAAGAATSYEQA 955 Query: 786 ADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIR 845 + RR+ R + + + P+P+ + E + R Sbjct: 956 LAEFEASPRRRRATRGNSRSDHAPKPEDFKSEPARREVEPIPVEEIGEAEEKPRRRSRGR 1015 Query: 846 YPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEP 905 RP V E + + S P V + + Sbjct: 1016 GRSQRPAPVVETTVETAVEDIPEETPRRNRPSEVAASAPSRPGRGRRRAVRRSSGHIETL 1075 Query: 906 QPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAE 965 P A + + + + + E Sbjct: 1076 DDATPTPITPSPADKAGDGEREASPSKGRRRRRRAIRVSGKALSQSTAEKQPEPAAPAGS 1135 Query: 966 VVVAEPEVVAQ 976 Q Sbjct: 1136 GRRRRGTRKPQ 1146 >UniRef50_D1BDM1 Ribonuclease, Rne/Rng family n=1 Tax=Sanguibacter keddieii DSM 10542 RepID=D1BDM1_SANKS Length = 1265 Score = 401 bits (1031), Expect = e-110, Method: Composition-based stats. Identities = 162/587 (27%), Positives = 273/587 (46%), Gaps = 10/587 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 ++R +I + ++A+++ L + + N+Y G++ + PS+EAAF+D Sbjct: 685 VERSMIVRERNGRTQIAVLEDGVLVEHYVSQQSQASMAGNVYLGRVQNVLPSMEAAFIDV 744 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + I+ L+ G V+VQ+ K+ G KGA LT+ + Sbjct: 745 GKGRNAVLYAGEVNWDAAGMEGQPR---RIEQALKSGDSVLVQVTKDPIGQKGARLTSQV 801 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LAG YLV +P GISR++ +R LK+ L + +PE G+IVRTA G S E L Sbjct: 802 TLAGRYLVYVPGGGMT-GISRKLPDTERARLKKILREV-VPETAGVIVRTAAEGASEEEL 859 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 + D++ WEAI+K +++ AP L+ E ++ +R RD D + + Sbjct: 860 RADIARLQGQWEAIEKKSKTASAPALLQGEPDLAIRVVRDIFNDDFTSLTVSGDGAWSEI 919 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 +++ AL PD + ++K +T + +F+ +I+ Q+ R+V LPSGGS+VID TEA+T Sbjct: 920 SEYVNALA-PDLAERVKRWTSDKDVFAEARIDEQLAKGMDRKVWLPSGGSLVIDRTEAMT 978 Query: 301 AIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +D+N+ + T GG +EET NLEAA+EI RQLRLRD+GG+IV+DFIDM ++ V Sbjct: 979 VVDVNTGKFTGSGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVVDFIDMVLESNRDLV 1038 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 R+ E + +DR + Q++ ++ GL++M+R+R+ L E+ C C+G G + +E Sbjct: 1039 LRRMVECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSETCDHCNGRGFIVHDEPN 1098 Query: 420 SLSILRLIE---EEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPN 476 + + +++ K + + + V Sbjct: 1099 EKHFQGGSQPSGAQVAAQSSAPADGGDSKRSRRKRGGAKETESTTVPVLPEAREAVKATL 1158 Query: 477 DQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPD 536 + H S +L + + E+ + +PA Sbjct: 1159 ATIAAAAAHAHEHDDEHGHAAGSAEQGELAVVEVTVVETEQVVDEVEQAEPADDVTVGEQ 1218 Query: 537 VPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFS 583 T AE + P + + R GA KA Sbjct: 1219 ATETETGAEDSDEQEPKRPVLDVVAELRSVRRPVSGRGRGAKKADQD 1265 Score = 56.9 bits (135), Expect = 5e-06, Method: Composition-based stats. Identities = 48/452 (10%), Positives = 94/452 (20%), Gaps = 4/452 (0%) Query: 541 PTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEA 600 PT A P T A A + + + + A A Sbjct: 5 PTNTTEPTDATAKKPARRRVTRPAAAPAAEAGDSTKDATSSEAPRSTSTTSAPAAETAAP 64 Query: 601 KPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQA 660 P+ + R + + + +A T ++ Sbjct: 65 APKTRSRRATSAKKTVETSTAPAAEAAAAEPAAAPAAAQSAAPTEAATSTEAAAPAKAPR 124 Query: 661 EVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRR 720 +T ++ + A A + Sbjct: 125 RSRRVTKTTEQLDVFAELSGPTSAPAAAASTAPAAAETAPAAVDTTAAVDTPAAAETTAP 184 Query: 721 KQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQ 780 + ++ + A + + EP P A Sbjct: 185 TEDAAPRRRTRAATRKASAPASAAAPASQETEPTAGTTAPAPVSDAPAEAPARAPRRSRS 244 Query: 781 QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG 840 + A + ++ + + S + + Sbjct: 245 RAAAPATTPTHEDEVASLDVVASIEALATEPASKPARRSRKAASAPATALFEDAEVSRPR 304 Query: 841 KVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEV----AGVV 896 + R + E ++VP A EP AP + Sbjct: 305 RAATRAASAPAAVEAEQTAPAAEAGSTSTSTSDVPAVTATEPQADAPRKTRSRRARSAEP 364 Query: 897 EAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETAD 956 E+ AEP + E A V E P T + + A + Q Sbjct: 365 ESRQAPAEPASAERDHQVAEPEAETVAEAPARRTTALLFQAPDPDAGRPRRRRAQSPAGP 424 Query: 957 IEEVVETAEVVVAEPEVVAQPAAPVVAEVAAE 988 + + E A V E + + + Sbjct: 425 PKAISEAAAAVEVEEDEDEATTDEALVAAQDQ 456 Score = 53.4 bits (126), Expect = 5e-05, Method: Composition-based stats. Identities = 52/427 (12%), Positives = 95/427 (22%), Gaps = 3/427 (0%) Query: 587 ETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQA 646 + T +P KP R++ R + +D S S + A Sbjct: 4 DPTNTTEPTDATAKKPARRRVTRPAAAPAAEAGDSTKDATSSEAPRSTSTTSAPAAETAA 63 Query: 647 QQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQE 706 +R + + E + + A + + A + + Sbjct: 64 PAPKTRSRRATSAKKTVETSTAPAAEAAAAEPAAAPAAAQSAAPTEAATSTEAAAPAKAP 123 Query: 707 TEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELV 766 + + +L+ + A A A + PA Sbjct: 124 RRSRRVTKTTEQLDVFAELSGPTSAPAAAASTAPAAAETAPAAVDTTAAVDTPAAAE--T 181 Query: 767 KVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPM 826 P A + A + P P + E Sbjct: 182 TAPTEDAAPRRRTRAATRKASAPASAAAPASQETEPTAGTTAPAPVSDAPAEAPARAPRR 241 Query: 827 PLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSA 886 + A A + + + V + + + P A E + Sbjct: 242 SRSRAAAPATTPTHEDEVASLDVVASIEALATEPASKPARRSRKAASAPATALFEDAEVS 301 Query: 887 PVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEP 946 AP V Q + + A + + +A Sbjct: 302 RPRRAATRAASAPAAVEAEQTAPAAEAGSTSTSTSDVPAVTATEPQADAPRKTRSRRARS 361 Query: 947 VVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHA 1006 EP+ A E + VAEPE AP A + + Sbjct: 362 A-EPESRQAPAEPASAERDHQVAEPEAETVAEAPARRTTALLFQAPDPDAGRPRRRRAQS 420 Query: 1007 TAPMTRA 1013 A +A Sbjct: 421 PAGPPKA 427 Score = 47.6 bits (111), Expect = 0.003, Method: Composition-based stats. Identities = 50/383 (13%), Positives = 90/383 (23%), Gaps = 9/383 (2%) Query: 679 RSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEE 738 + ++ V + + + + + Sbjct: 4 DPTNTTEPTDATAKKPARRRVTRPAAAPAAEAGDSTKDATSSEAPRSTSTTSAPAAETAA 63 Query: 739 AVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRS 798 +A+ V+ + AP E A A + + + Sbjct: 64 PAPKTRSRRATSAKKTVETSTAPAAEAAAAEPAAAPAAAQSAAPTEAATSTEAAAPAKAP 123 Query: 799 RRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEE 858 RRS R + + Q + + A A+ E A V + P + Sbjct: 124 RRSRRVTKTTEQLDVFAELSGPTSAPAAAASTAPAAAETAPAAVDTTAAVDTPAAAETTA 183 Query: 859 QREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVI 918 E + +A A E AP V++ E Sbjct: 184 PTEDAAPRRRTRAATRKASAPASAAAPASQETEPTAGTTAPAPVSDAPAEAPARAPRRSR 243 Query: 919 AAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPA 978 + A E +VA VA EP + A +A + Sbjct: 244 SRAAAPATTPTHEDEVASLDVVASIEALATEPASKPARRSRKAASAPATALFEDAEVSRP 303 Query: 979 APVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGK 1038 A+ V A + E + + PA + + A Sbjct: 304 RRAATRAASAPAAVEAEQTAPAAEAGSTSTSTSDVPA---------VTATEPQADAPRKT 354 Query: 1039 GAAGGHTATHHASAAPARPQPVE 1061 + +A + APA P E Sbjct: 355 RSRRARSAEPESRQAPAEPASAE 377 >UniRef50_C1F7B7 Ribonuclease, Rne/Rng family, insertion n=2 Tax=Bacteria RepID=C1F7B7_ACIC5 Length = 1013 Score = 401 bits (1029), Expect = e-110, Method: Composition-based stats. Identities = 138/402 (34%), Positives = 218/402 (54%), Gaps = 5/402 (1%) Query: 88 PNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIE-GD 146 P I D+L++GQE++VQI KE KGA +T+ I+L G +LV MP G+SR+I + Sbjct: 615 PIISDLLKQGQEILVQIAKEPIAKKGARITSHIALPGRFLVFMPTVNHV-GVSRKISSDE 673 Query: 147 DRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFL 206 +R LK L S + G IVRTA G + L+ D+ F + W IK+ ++S AP L Sbjct: 674 ERQRLKRILISEKGDATGGFIVRTAAEGAGEDELRADIRFLINLWNEIKERSDSGKAPAL 733 Query: 207 IHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLF 266 I+ + N++ R RD + ++ I +D+ E + + P ++KLYT E+PLF Sbjct: 734 IYHDLNLVERILRDQVSEEFSTIWVDSETDYERIVRFLNRFQ-PSLVRRVKLYTKEMPLF 792 Query: 267 SHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGD-IEETAFNTNLE 325 + I+ +I A + +V L SGGSIVI+ TEAL AIDIN+ + +E+T TNL+ Sbjct: 793 EQFGIQDEITKALKSKVWLKSGGSIVINQTEALVAIDINTGKYVGKTARLEDTIVKTNLD 852 Query: 326 AADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLL 385 A EI RQ+RLRDLGG+IVIDFIDM +++ V L E ++ DRA ++ + FGL+ Sbjct: 853 AIPEIVRQIRLRDLGGIIVIDFIDMDERKNRHKVLQALEEELKHDRAPSKVLQFNDFGLV 912 Query: 386 EMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQEVHAIVPV 445 ++R+R+ SL + C C+GTG V+ +++ I + + ++V V Sbjct: 913 AITRKRVKQSLERTLSIPCNICTGTGMVKSPATVANEIYVEMRKMQRHLENKDVLLRVNP 972 Query: 446 PIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVL 487 + L +N +E G ++ + + + + Sbjct: 973 EVVKTLKASGGRWLNELEEM-TGKTIIVKSDPTLHPEQFDIH 1013 Score = 83.0 bits (203), Expect = 5e-14, Method: Composition-based stats. Identities = 23/76 (30%), Positives = 43/76 (56%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + + ++ E R+A+++ +L ++ E +IYKG++TR+ P +++AFVD Sbjct: 1 MAKEICISSTPHETRLAILEDDQLAEIYYERENEYTLAGSIYKGRVTRVLPGMQSAFVDI 60 Query: 61 GAERHGFLPLKEIARE 76 G ER FL + + E Sbjct: 61 GLERDAFLYVTDFLEE 76 >UniRef50_Q1D0P4 Ribonuclease, Rne/Rng family n=7 Tax=Proteobacteria RepID=Q1D0P4_MYXXD Length = 936 Score = 401 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 152/564 (26%), Positives = 244/564 (43%), Gaps = 3/564 (0%) Query: 79 PANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGG 138 I+D+L+ GQEV+VQI K+ G KGA LT+ IS+ G +LV MP G Sbjct: 348 KEKAKPRRTDKIEDLLKVGQEVVVQISKDPIGTKGARLTSHISIPGRHLVFMPTVDHV-G 406 Query: 139 ISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAA 198 ISRRI + + P G G IVRT E L+ D+ F ++ W + + Sbjct: 407 ISRRISNEKERRRLRDIVDRLRPPGTGFIVRTVAENVPQEKLESDIRFLIEVWNQVVRKN 466 Query: 199 ESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKL 258 E R P L+H + ++I+RA RD D+ ++++D+ + E + A P ++ L Sbjct: 467 EKRGGPGLLHPDLDLILRATRDLFAHDVEKLVVDDREEYERILGFVTA-QDPALRDRVAL 525 Query: 259 YTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEET 318 + G+ +F Y IE +++ A QR+V L SGG ++ID EALTAID+NS R +EET Sbjct: 526 HEGDDTVFDAYGIEQELQRATQRKVWLKSGGYLIIDQAEALTAIDVNSGRYVGKKSLEET 585 Query: 319 AFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISH 378 N+EAA EI QLRLR++GG+I+ DFIDM +++ V L+EA+ +D+A+ + Sbjct: 586 ITKINVEAAKEIVYQLRLRNIGGIIICDFIDMEKAQNRDKVFKALQEALGRDKAKTNVLR 645 Query: 379 ISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQE 438 IS GL+EM+R+R+ S+G H CP C G G V+ +++ I R I EA Sbjct: 646 ISELGLVEMTRKRVRESIGRMLHEDCPYCDGNGFVKTATTVAYEIFREIRREAPGYKDST 705 Query: 439 VHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTL 498 + +A L E+R+ + + R + + Y + + Sbjct: 706 LVINCNAEVARLLQGEERNELRHLMDRYNK-SIQVKAQQNYHREQYDIYGRSASGPEHKV 764 Query: 499 SYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAA 558 + E + + Q + + Sbjct: 765 ASSPGSGDGELAMQQRKPDSNGGGYGRQEQGRRGGGGGGGGGRDRGGERGNERSERGERG 824 Query: 559 PATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRD 618 + + G + E+ E ++ + + R + Sbjct: 825 GDRREGRREGRSGGDRPRGDRGGERGDRSERGGERGERGGERGERSERGGERSERGERSE 884 Query: 619 RNERRDTRSERTEGSDNREENRRN 642 R ER D R +R E + + Sbjct: 885 RGERGDRRGDRGERGERGGSQNTS 908 Score = 84.6 bits (207), Expect = 2e-14, Method: Composition-based stats. Identities = 26/76 (34%), Positives = 43/76 (56%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M +L+ E RVALV+G + + +E + NIYKG++ R+ P ++AAFVD Sbjct: 1 MSSILVINAAGRETRVALVEGGHIAEFYLERKKDKGVVGNIYKGRVVRVLPGMQAAFVDI 60 Query: 61 GAERHGFLPLKEIARE 76 G E+ FL + ++ + Sbjct: 61 GLEKAAFLYVSDVVYD 76 Score = 52.2 bits (123), Expect = 1e-04, Method: Composition-based stats. Identities = 37/275 (13%), Positives = 63/275 (22%), Gaps = 3/275 (1%) Query: 774 AQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACA 833 + E + ++ PRHL + P + A Sbjct: 87 TEGEHEDAPDVPDESEAEAAEAAARHAPPRHLEPEPEDAHFEPVAAPTESLPRDTALELA 146 Query: 834 SPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVA 893 + P+ ++ V A+EP +APV A Sbjct: 147 ANAPTVTPPGAETPVAPAEEAPAAGSELVVAAEVAVQPVTPEQIVAVEPSTAAPVEAAPA 206 Query: 894 GVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEE 953 +P++ E E P+ A + A A P E Sbjct: 207 PAGGEAEAAPSSEPQMAEAAVEPDA---NVESPEAALAVAAASEPDAAGVAVPAESAMEA 263 Query: 954 TADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRA 1013 + + + +P A + + E E A P R Sbjct: 264 AEGEATGLPVEPPPPSAAALGDIIPSPAEEGAQAAKPSEVSGERRTPREAREAREPRNRE 323 Query: 1014 PAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATH 1048 + R + +R E K A Sbjct: 324 KERGEKDKGRRPQEEKRRGDKHEDKEKAKPRRTDK 358 Score = 46.8 bits (109), Expect = 0.004, Method: Composition-based stats. Identities = 35/249 (14%), Positives = 53/249 (21%), Gaps = 15/249 (6%) Query: 828 LTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAP 887 ++ P+ A + + +E + + E P Sbjct: 70 VSDVVYDPDFARAQFELTEGEHEDAPDVPDESEAEAAEAAARHAPPRHLEPEPEDAHFEP 129 Query: 888 VVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAV-------TEQPQVITESDVAVAQEV 940 V + V E A +E + V E Sbjct: 130 VAAPTESLPRDTALELAANAPTVTPPGAETPVAPAEEAPAAGSELVVAAEVAVQPVTPEQ 189 Query: 941 AEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVT 1000 EP E A E +EP++ P + E A E Sbjct: 190 IVAVEPSTAAPVEAAPAPAGGEAEAAPSSEPQMAEAAVEPDANVESPEAALAVAAASEPD 249 Query: 1001 VEHNHATAPMTRAPAPEY----VPEAPRHSDWQ----RPTFAFEGKGAAGGHTATHHASA 1052 A A E P S P+ A EG AA + Sbjct: 250 AAGVAVPAESAMEAAEGEATGLPVEPPPPSAAALGDIIPSPAEEGAQAAKPSEVSGERRT 309 Query: 1053 APARPQPVE 1061 + E Sbjct: 310 PREAREARE 318 >UniRef50_B7ANV1 Putative uncharacterized protein n=1 Tax=Bacteroides pectinophilus ATCC 43243 RepID=B7ANV1_9BACE Length = 418 Score = 400 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 109/424 (25%), Positives = 197/424 (46%), Gaps = 35/424 (8%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M+R+LI + A+ D + + + E NIY G++ + ++ AAF++Y Sbjct: 1 MQRLLI-TKFNGQTLCAVCDQMTIRTVRVIE--DESILGNIYVGRVENVVNNINAAFIEY 57 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 + G+ L + F P D + G V+VQ+ +E K LT I Sbjct: 58 ARGKKGYYSLTDNEHHIFL-------NPKNNDRMCIGDLVLVQVSREGVKTKEPTLTGRI 110 Query: 121 SLAGSYLVLMPNN---PRAGGISRRIEGDDRTELKEALASLELPE--------------- 162 + G Y L + + IS++I +DR + + + Sbjct: 111 GITGRYCALTLDCKSENSSVFISKKITDEDRRSYLKGIVKDAMNNALNAYTASSVNSIPT 170 Query: 163 ----GMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAF 218 +IVRT E + ++S + I K A +R ++ + Sbjct: 171 ASDMHFNIIVRTNAEDAPEEPVTAEVSRIVTTMCDILKDAVTRKGLTRMYSPEESCLEDV 230 Query: 219 RDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTG-EIPLFSHYQIESQIES 277 ++ ++ +I+ D P+V + R+++ P ++K++ Y ++PL Y +ESQI + Sbjct: 231 QNMRATNLEKIITDIPEVYDSVRRYLGE-NEPGEAAKLEFYDDMQLPLNKLYSVESQIST 289 Query: 278 AFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEE-TAFNTNLEAADEIARQLRL 336 A + V LPSGG +VI+ TEALT ID+NS + T +++ T N+EAA EI RQL L Sbjct: 290 ALNKRVWLPSGGYLVIEPTEALTVIDVNSGKFTGNRKLKDNTYLKINMEAAVEIGRQLML 349 Query: 337 RDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSL 396 R+L G+IV+DFI++ ++ + + L + ++ D + ++R GL+E++R+++ L Sbjct: 350 RNLSGIIVVDFINLNTFEEKKELMSYLADILKADTVPTSVVDMTRLGLVEITRKKIRKPL 409 Query: 397 GESS 400 E Sbjct: 410 HEVI 413 >UniRef50_Q6AIU3 Probable RNAse E n=1 Tax=Desulfotalea psychrophila RepID=Q6AIU3_DESPS Length = 883 Score = 399 bits (1025), Expect = e-109, Method: Composition-based stats. Identities = 208/505 (41%), Positives = 317/505 (62%), Gaps = 13/505 (2%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 R+LINA + EE R+AL++ RL + + + Q K NIYK K+ +E +L+AAFVDYG Sbjct: 380 RLLINAEEPEECRLALLEDGRLESIHVSTVTRAQTKNNIYKAKVVAVEANLQAAFVDYGT 439 Query: 63 ERHGFLPLKEIAREYFPANYSAHGRPN----------IKDVLREGQEVIVQIDKEERGNK 112 ++GFLP EI EY+ A+ S R N I+DV+ GQE++VQ+ KEE G K Sbjct: 440 VKNGFLPFSEIHPEYYRADLSESARKNVEERRWRRLKIEDVMARGQELLVQVVKEEVGKK 499 Query: 113 GAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRT-ELKEALASLELPEGMGLIVRTA 171 GA +TT++SL G +VLMP + A GISR+I G++R +L++ + SL +PEG G IVRTA Sbjct: 500 GANMTTYLSLPGRCVVLMPGSDSA-GISRKIVGEERRSQLRDTMRSLGIPEGTGWIVRTA 558 Query: 172 GVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILI 231 V + EAL D+++ LK WE +++ + LI+++ ++R R++ I EIL+ Sbjct: 559 SVDINEEALARDVTYLLKLWEDVREKGQEIKDVGLIYEDHRSVMRFLREHYDPSIQEILV 618 Query: 232 DNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSI 291 D P LE + ++ L + K++L+ G P+F+ + +E QIES +Q +V LPSGGSI Sbjct: 619 DAPLALEQVNEFVSMLPANQQNVKVRLHKGSRPIFNQFSVEDQIESIYQPQVSLPSGGSI 678 Query: 292 VIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMT 351 VID TEAL AID+NS ++G + +E+ F N+EAA E ARQLRLRDLGGL+V+DFIDM Sbjct: 679 VIDPTEALVAIDVNSGSTSKGKNFDESIFQANMEAASEFARQLRLRDLGGLVVVDFIDMR 738 Query: 352 PVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTG 411 +H AVE +++ A+++D+A++ + IS+FGL+++SRQ+L + ++ VC C G G Sbjct: 739 NKKHINAVEKQVKIAMKRDKAKVDFTRISKFGLMQISRQKLGSPIEAGAYRVCQHCKGRG 798 Query: 412 TVRDNESLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRC 471 VR E+L+L LR I+ A ++ ++ P+ +ASYLLN KR + +E + V Sbjct: 799 IVRAVETLALFYLRRIQTGASRKPVVKIECHFPLDVASYLLNNKRQEITEMENN-NEVEI 857 Query: 472 VIVPNDQMETPHYHVLRVRKGEETP 496 +IV + + ++ R +E Sbjct: 858 MIVVESRFKPAENEIVFHRAEKEKE 882 Score = 56.9 bits (135), Expect = 4e-06, Method: Composition-based stats. Identities = 37/282 (13%), Positives = 68/282 (24%), Gaps = 1/282 (0%) Query: 779 EQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELA 838 + + ++ + + + + + + S + A Sbjct: 8 SEAQSKKSEGNEAKSKLKIKASTGAWWKSKVETEAKAPVAAKKVSSQVKTPSPEAVQPTK 67 Query: 839 SGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEA 898 K V+ + Q +P A + P + Sbjct: 68 PAKPAQAAKPVKAAKPAKAAEAAQTAKPAKPAKPAKAAETAKPAKAAKPAKVAESAKPAK 127 Query: 899 PVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIE 958 P + A+P T E A T +P E V EQ PV + Sbjct: 128 PAKPAKPAKSAGATKVAEPAKPAKTTKPAKAVEVAEKVVGGAVEQKAPVAKESAPKPPAR 187 Query: 959 EVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEY 1018 + T ++ A VE + +P VE ++ + AP E Sbjct: 188 KKRATRPARPVAKAS-SEEAKVASEPAKKAVEAKSGEKPVQDVEKAPVSSAESPAPESEV 246 Query: 1019 VPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPARPQPV 1060 P+ R + AP + V Sbjct: 247 APKKRPARRRSRSNKKTSARPETDSVAEKAPMDPAPVSEKAV 288 >UniRef50_UPI0001973AFC ribonuclease n=1 Tax=Clostridium sp. M62/1 RepID=UPI0001973AFC Length = 441 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 114/433 (26%), Positives = 197/433 (45%), Gaps = 34/433 (7%) Query: 1 MKRM---LINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAF 57 M+R L+ ++ AL + + L++E NIY GK+ I ++ +AF Sbjct: 1 MERKSNKLLITRWNGQILTALTEDGKCRSLNLEPADSRGILGNIYIGKVKNIVKNINSAF 60 Query: 58 VDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKD------------------------- 92 VD G+ + G+ LKE R F +A N K Sbjct: 61 VDLGSGQIGYYSLKENKRHLFTDEIAAAQAGNRKKTEGEENGTEEGWMKKSDGFPVRAKE 120 Query: 93 -VLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEG-DDRTE 150 + + G E+IVQ++++ K LT+ ++ G YLVL + G S +I + Sbjct: 121 RLPKAGDEIIVQVERDAVKTKDPVLTSNLNFTGKYLVLTLGKNQI-GFSGKIRDGAWKES 179 Query: 151 LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQE 210 LK+ L + + G+IVRT +++ +L + + A R L+ Sbjct: 180 LKKILEE-KKDDSFGIIVRTNAREADIQSILRELELLKERKSRLFATAGWRTCYSLLSSS 238 Query: 211 SNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGE-IPLFSHY 269 V + RD +++ I+ D+ + R ++ R D K+ Y +PL Y Sbjct: 239 EPSYVNSIRDTYAENLEAIVTDDRDCYDALRTYMEENQREDL-EKLSFYEDTMVPLAKLY 297 Query: 270 QIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADE 329 +++ +E A + V L SGG +VI+ TEALT ID+N+ + ET N EAA E Sbjct: 298 SLDTAMEQALGKHVWLKSGGYLVIEPTEALTVIDVNTGKYAGKKTQAETILRINREAAVE 357 Query: 330 IARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSR 389 IARQ++LR+L G+I++DFIDM ++ + L + +D + + +++ GL+E++R Sbjct: 358 IARQMQLRNLSGIIIVDFIDMDADEDKKELMRLLELELLRDPVKTVLVEMTKLGLVEITR 417 Query: 390 QRLSPSLGESSHH 402 +++ L E Sbjct: 418 KKIRRPLAEQVRE 430 >UniRef50_Q2B6H0 Cytosolic axial filament protein n=1 Tax=Bacillus sp. NRRL B-14911 RepID=Q2B6H0_9BACI Length = 492 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 130/462 (28%), Positives = 222/462 (48%), Gaps = 10/462 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK+++IN +E+ L + + L I+ P + +IY G + ++ P + AAFV+ Sbjct: 1 MKKLVINYATREKRYAVLNESGKPEKLIIDQPKNLSAVGSIYLGTVAKVLPGMNAAFVEI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRP-NIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 G E+ GFL +A A +I +REG++++VQ++K+ G KG LT Sbjct: 61 GEEKSGFLHRDRLASYVRSAEDKEKKDKKSISSFVREGEKLLVQVEKDAAGTKGPRLTNV 120 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 I G L+ MP +SR+IE D E L E GLI RT+ G S E Sbjct: 121 IEFQGEKLIYMPFGRYV-AVSRKIEKDSAREELRTLGMKLKEEEEGLIFRTSAAGASEED 179 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 Q +L + K A S P + ++ + A + R GE+++D+ V + Sbjct: 180 FQKELEELRAEHRELAKKAASVKKPAKLAEKETFLEEAAAEMARLGAGEVVVDDLAVKQK 239 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 + A ++ Y + +FS Y ++ +I+ A ++ V L +G ++ D EAL Sbjct: 240 LEKAAAESV-------VRYYNNKESIFSAYNLDQEIDRALKKIVWLDNGAYLIFDEAEAL 292 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+N+ + + ++ +T TN AA E ARQ+RLRD+GG+I+IDFIDM R ++ + Sbjct: 293 TVIDVNTGKYSGRENLRDTVLRTNEWAAAEAARQIRLRDIGGMILIDFIDMKEERDRQHI 352 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 + + +R+D R +I + G+L+++R++ +L ES C C GTG + E+ Sbjct: 353 SRVMEKELRKDERRTRIVGFTPLGILQITRKKTRAALSESLTVKCTACEGTGRMVSAETA 412 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNA 461 + + R I E + + + + E+ Sbjct: 413 AFRLEREIWEMRGSDYEAALI-RLSADVLDVFSGEQGIHRKR 453 >UniRef50_A0L8J1 Ribonuclease E n=1 Tax=Magnetococcus sp. MC-1 RepID=A0L8J1_MAGSM Length = 984 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 238/871 (27%), Positives = 377/871 (43%), Gaps = 39/871 (4%) Query: 69 PLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLV 128 P + + I+D+L++GQ +++Q+ KE RG KGA+LTT ISLAG Y V Sbjct: 150 PARRPRNNERANRGNRRRHIPIQDILKKGQLLLLQVVKEARGTKGASLTTNISLAGRYTV 209 Query: 129 LMPNNPRAGGISRRIEGDD-RTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFR 187 L+P N GGISR+I + R LK L +E+P+ + LI+RTAG+ ++ + D+S+ Sbjct: 210 LLPENSGGGGISRKIMDNQARKALKTMLTEMEIPQEVSLIIRTAGMERTKREIARDMSYL 269 Query: 188 LKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAAL 247 + W+ I++ E P LIH+E ++I+R RD D+ EILID + + + L Sbjct: 270 TRLWKTIQEKVEQHNTPTLIHEEGDLIIRTIRDLYSTDMEEILIDGGEAYRRGKDFMR-L 328 Query: 248 GRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSA 307 P + ++ Y IPLFS YQ+E QIES +R + L +GG +VI+ TEAL +IDINS Sbjct: 329 LMPRYVKAVQPYKDRIPLFSRYQVEHQIESMHERTISLKAGGYLVIEPTEALVSIDINSG 388 Query: 308 RATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAV 367 R+T+ ++E TAF TN++A DEIARQLRLRDLGGLIVIDFIDM +H VE RL+EA+ Sbjct: 389 RSTKEKNVENTAFKTNMQAVDEIARQLRLRDLGGLIVIDFIDMEEKKHNLEVEKRLKEAL 448 Query: 368 RQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLI 427 + DRA+IQ+ IS+FGLLE+SRQR+ P+ ES+ VCPRC+G GT+R ES ++ + R I Sbjct: 449 KGDRAKIQLGKISQFGLLELSRQRMKPAFNESNREVCPRCTGLGTIRSVESTAIRLFRCI 508 Query: 428 EEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVL 487 EE+ ++ P +A+YL N KR + +E + + +I + +++TPH+ Sbjct: 509 EEDISSGRFSKLIYFAPADVANYLHNRKRFQMVQLEQE-NNLELLIEIDPELQTPHF--- 564 Query: 488 RVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPA 547 +E +A P ++E ++RPE + D P + Sbjct: 565 ------------------RKERIARPVQDEPVVKERPEPEEPTLVSEEDEP------QEL 600 Query: 548 APVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQD 607 A + P + R + G E T E+ P EA + Sbjct: 601 MDDAAEGGEENRTDPKKRKRRRKRRRGGREREEGAMGEETTSLNEEEMPSTEAPAMDDEA 660 Query: 608 RRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKAR 667 + + + + +E +T + + RR RR+ + + E R + E+A Sbjct: 661 DDEGDGDEQANPSESAETTPDS-----PSKRRRRRRRRRRSTSQEESAPRLDSGDEEQAI 715 Query: 668 TADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQ 727 DE ++ ++R++ +L + +E + Sbjct: 716 HGDEPSPSPEDQPQQRDEHPVTLSDVLHSLPTSVTPL--LMEEPDTPQPVLLIDPPTMPI 773 Query: 728 KVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNAD 787 K E + +V+ P + E P E V + +++ Sbjct: 774 KHEVEIETPQPSVLLPEDPQPAIVERTQSTLPGLEVEPPLQEQVAVKKPVRRRRKPAVKK 833 Query: 788 NRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYP 847 S + + + + + + A Sbjct: 834 PSAETAESVVSAQEVENHATASVTPAAAENVQDKASIAADPDAGVTTDVAAGDHPTPSEG 893 Query: 848 IVRPQDVQVEEQREQEEVHVQP--MVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEP 905 P+ + + T P PVV P A P V P Sbjct: 894 AEPPKQRRRSSTPRKRATPKADTAAETAAPTTTPEAPVVETPAETPAATTEAKPKAVRAP 953 Query: 906 QPEVVETTHPEVIAAAVTEQPQVITESDVAV 936 + A E+ V Sbjct: 954 RKRTATPRKRATAAKPAAEESHQGEAVPDEV 984 Score = 79.2 bits (193), Expect = 7e-13, Method: Composition-based stats. Identities = 45/87 (51%), Positives = 60/87 (68%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 KRML++AT EE+RVA+V QRL DLDIE+ Q K NIY G++TR+EPSL+AAFVD+ Sbjct: 3 KRMLVDATHPEEVRVAIVQDQRLIDLDIETCTKAQIKGNIYLGRVTRVEPSLQAAFVDFN 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRP 88 R GFL + +I +Y+P + P Sbjct: 63 DGRQGFLSVNDINPKYYPPEFRPEPDP 89 Score = 71.9 bits (174), Expect = 1e-10, Method: Composition-based stats. Identities = 54/421 (12%), Positives = 116/421 (27%), Gaps = 1/421 (0%) Query: 637 EENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKA 696 E + + ++ R + + V E+ + + + DD + +E + Sbjct: 554 EIDPELQTPHFRKERIARPVQDEPVVKERPEPEEPTLVSEEDEPQELMDDAAEGGEENRT 613 Query: 697 LNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQ 756 + + ++ + R R ++ + + A E + Sbjct: 614 DPKKRKRRRKRRRGGREREEGAMGEETTSLNEEEMPSTEAPAMDDEADDEGDGDEQANPS 673 Query: 757 EAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYR 816 E+ + + +E +A D+G + Q ++R Sbjct: 674 ESAETTPDSPSKRRRRRRRRRRSTSQEESAPRLDSGDEEQAIHGDEPSPSPEDQPQQRDE 733 Query: 817 DERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPV 876 + L + + ++ P + ++ + E E ++ E P Sbjct: 734 HPVTLSDVLHSLPTSVTPLLMEEPDTPQPVLLIDPPTMPIKHEVEIETPQPSVLLPEDPQ 793 Query: 877 AAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAV 936 A +E S EV ++ V V +P + + A E E + Sbjct: 794 PAIVERTQSTLPGLEVEPPLQEQVAVKKPVRRRRKPAVKKPSAET-AESVVSAQEVENHA 852 Query: 937 AQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVE 996 V A V+ + A + T +V + ++ A P + A Sbjct: 853 TASVTPAAAENVQDKASIAADPDAGVTTDVAAGDHPTPSEGAEPPKQRRRSSTPRKRATP 912 Query: 997 PEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAPAR 1056 T A AP E E P + +P + A+ A Sbjct: 913 KADTAAETAAPTTTPEAPVVETPAETPAATTEAKPKAVRAPRKRTATPRKRATAAKPAAE 972 Query: 1057 P 1057 Sbjct: 973 E 973 >UniRef50_A7VBE5 Putative uncharacterized protein n=3 Tax=cellular organisms RepID=A7VBE5_9CLOT Length = 388 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 106/407 (26%), Positives = 188/407 (46%), Gaps = 24/407 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M +++I + L A+ +L DL + + +NIY GK+ I +++AAFVD Sbjct: 1 MNKLVITNYEDHILE-AVYSDGKLSDLML--FDRQSILSNIYVGKVENIVANIDAAFVDI 57 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G + + + + A ++ VL+ G E++VQ+ K+ K T+ I Sbjct: 58 GTGLPCYYSISDNKHIFLNAKKNS--------VLKAGDEILVQVSKDAIKTKNPVATSEI 109 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 L L+ N GIS +I + + LA LP+G G I+RT E + Sbjct: 110 ELKTEN--LLVNTSGRIGISGKIRKKETRDHLHQLAKRVLPDGFGCILRTVCQELPDETI 167 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYL----RQDIGEILIDNPKV 236 DLS K + I + A++R +++ + DY + EI+ D V Sbjct: 168 LSDLSELSKQLKQIIQTAKTRTCYSCLYKNDAEYL----DYFILKHNAGLQEIVTDQKLV 223 Query: 237 LELARQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDS 295 + +++ D K+ +Y + L + Y + +E+ + V + SG +VI+ Sbjct: 224 FDEFAMYLSEKQITDV--KLTMYNDKNCNLLTLYNLPRDLENLKKERVWMKSGAYLVIEQ 281 Query: 296 TEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRH 355 TEA+ ID+N+ ++ EE N EAA E+ RQLRLR+L G+IV+DFI+M Sbjct: 282 TEAMVVIDVNTGKSVDKHSFEEHLLRINSEAAVEVCRQLRLRNLSGIIVVDFINMKQPGS 341 Query: 356 QRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHH 402 +++ L + + +D +++ L+E++R+++ SL E Sbjct: 342 MDVIKDILEQELAKDSVPAAFVDVTKLSLVELTRKKIRKSLKEQLTK 388 >UniRef50_D1BV45 Ribonuclease, Rne/Rng family n=2 Tax=Actinomycetales RepID=D1BV45_XYLCX Length = 1043 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 147/422 (34%), Positives = 231/422 (54%), Gaps = 8/422 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R +I + ++A+++ L + + N+Y G++ + PS+EAAFVD Sbjct: 551 VSRSMIVRERDGRTQIAVLEDGVLVEHYVSQQSQSSMVGNVYLGRVQNVLPSMEAAFVDV 610 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + + I+ L+ G V+VQ+ K+ G+KGA LT+ + Sbjct: 611 GKGRNAVLYAGEVNWDAAGLDGGQPR--RIEQALKSGDSVLVQVTKDPIGHKGARLTSQV 668 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 +LAG YLVL+P GISR++ +R LK+ L + +PEG G+IVRTA G S E L Sbjct: 669 TLAGRYLVLVPGGGMT-GISRKLPDVERNRLKKVLRDI-VPEGAGVIVRTAAEGASEEEL 726 Query: 181 QWDLSFRLKHWEAIKKAAESRP--APFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 + D+ W I A AP L+ E ++ +R RD D +++ + Sbjct: 727 RADVERLQNQWTGITTKAGRASTSAPALLQGEPDLAIRVVRDIFNDDFSSLIVQGDGAWQ 786 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 ++ L PD ++ +T +FS ++++ Q+ R+V LPSGGS+VID TEA Sbjct: 787 EVAGYVEELA-PDLRERVTSWTENTDVFSVHRVDEQLAKGMDRKVWLPSGGSLVIDRTEA 845 Query: 299 LTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 +T ID+N+ + T GG +EET NLEAA+EI RQLRLRD+GG+IVIDFIDM ++ Sbjct: 846 MTVIDVNTGKFTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRD 905 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V RL E + +DR + Q++ ++ GL++M+R+R+ L E+ C C G G + E Sbjct: 906 LVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRVGQGLVEAFSETCEHCKGRGFIVHAE 965 Query: 418 SL 419 + Sbjct: 966 PI 967 Score = 66.9 bits (161), Expect = 4e-09, Method: Composition-based stats. Identities = 45/379 (11%), Positives = 82/379 (21%), Gaps = 12/379 (3%) Query: 684 NDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAP 743 +D+ ++ A+ + + + L+ A++A Sbjct: 3 SDNTEPTRKPARRRVMRPAGGPAAGTTPDAPVTPRQAEPAALSLTDIVMPERADDAATTE 62 Query: 744 VVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPR 803 + L + LP D PR++ R+ R Sbjct: 63 PSTRVTVGRSTGAGSRRAVRSLADIELPNGPAAPSASAPARADDVEPVEKAPRKTTRTRR 122 Query: 804 HLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQE 863 + + + P A A G+ + + + Sbjct: 123 PKAAAQEAATEVVPATEAPAADTPAQDTVAENTAAQGEPGRETRAPKTAATKSTRAKAAA 182 Query: 864 EVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVV-EAPVQVAEPQPEVVETTHPEVIAAAV 922 + A + + A VA E + Sbjct: 183 KTESADEPGAEAATRAPRTRRARAERTDRVERSGSAAEPVAATTGEQAVADTEPPADSTA 242 Query: 923 TEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVV 982 T + + + QA + P+ + +A P Sbjct: 243 TASRAPGSSTPRLATTAMLFQAPDLATPRRSRRVVAPAGPPTTPALATKPAETTP----T 298 Query: 983 AEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAG 1042 E+ ET E T E A+ RA P A Sbjct: 299 PEIQGGAETQDVAETRPTAERKPASGRARRASRKTAEPTTADAPAKAPLVLDLPEPVGAA 358 Query: 1043 GHTATHHASAAPARPQPVE 1061 A P P+PVE Sbjct: 359 -------ARVEPTAPEPVE 370 Score = 66.5 bits (160), Expect = 6e-09, Method: Composition-based stats. Identities = 54/366 (14%), Positives = 91/366 (24%), Gaps = 2/366 (0%) Query: 525 EQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSG 584 +P + PA PA P P+ A + + R A S Sbjct: 6 TEPTRKPARRRVMRPAGGPAAGTTPDAPVTPRQAEPAALSLTDIVMPERADDAATTEPST 65 Query: 585 GEETKPTEQPAPKAEAKP-ERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNR 643 + + + + P + D R Sbjct: 66 RVTVGRSTGAGSRRAVRSLADIELPNGPAAPSASAPARADDVEPVEKAPRKTTRTRRPKA 125 Query: 644 RQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQS 703 + T + A T T E A + E R K A + +A + Sbjct: 126 AAQEAATEVVPATEAPAADTPAQDTVAENTAAQGEPGRETRAPKTAATKSTRAKAAAKTE 185 Query: 704 VQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRT 763 + E R+ R A E V A E+ VA ++ A + Sbjct: 186 SADEPGAEAATRAPRTRRARAERTDRVERSGSAAEPVAATTGEQAVADTEPPADSTATAS 245 Query: 764 ELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQ 823 P +A TA Q + A R + + + + E Sbjct: 246 RAPGSSTPRLATTAMLFQAPDLATPRRSRRVVAPAGPPTTPALATKPAETTPTPEIQGGA 305 Query: 824 SPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPV 883 + + E R + + + + + V + V AA +EP Sbjct: 306 ETQDVAETRPTAERKPASGRARRASRKTAEPTTADAPAKAPL-VLDLPEPVGAAARVEPT 364 Query: 884 VSAPVV 889 PV Sbjct: 365 APEPVE 370 Score = 63.8 bits (153), Expect = 3e-08, Method: Composition-based stats. Identities = 50/420 (11%), Positives = 95/420 (22%), Gaps = 8/420 (1%) Query: 561 TPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRN 620 T +R A T +AE D P + + Sbjct: 2 TSDNTEPTRKPARRRVMRPAGGPAAGTTPDAPVTPRQAEPAALSLTDIVMPERADDAATT 61 Query: 621 ERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERS 680 E + R+ + S + ++ Sbjct: 62 EPSTRVTVGRSTGAGSRRAVRSLADIELPNGPAAPSASAPARADDVEPVEKAPRKTTRTR 121 Query: 681 RRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAV 740 R + + A + A + Q + K +S +A Sbjct: 122 RPKAAAQEAATEVVPATEAPAADTPAQDTVAENTAAQGEPGRETRAPKTAATKSTRAKAA 181 Query: 741 VAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRR 800 + AE + R + + +A E + P Sbjct: 182 AKTESADEPGAEAATRAPRTRRARAERTDRVERSGSAAEPVAATTGEQAVADTEP----- 236 Query: 801 SPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQ--DVQVEE 858 P + R R T + + A+P + V P P E Sbjct: 237 -PADSTATASRAPGSSTPRLATTAMLFQAPDLATPRRSRRVVAPAGPPTTPALATKPAET 295 Query: 859 QREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVI 918 E E ++ + P P + PE + Sbjct: 296 TPTPEIQGGAETQDVAETRPTAERKPASGRARRASRKTAEPTTADAPAKAPLVLDLPEPV 355 Query: 919 AAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPA 978 AA +P ++ + A + +E + +E V E +V + + +P Sbjct: 356 GAAARVEPTAPEPVELTGEEAAAAEEVAAIEAELVADGVELVDLGPEDLVDDEDTELEPE 415 Score = 58.8 bits (140), Expect = 1e-06, Method: Composition-based stats. Identities = 52/486 (10%), Positives = 92/486 (18%), Gaps = 3/486 (0%) Query: 456 RSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSE 515 R A A + D V + P V R + E + Sbjct: 37 RQAEPAALSLTDIVMPERADDAATTEPSTRVTVGRSTGAGSRRAVRSLADIELPNGPAAP 96 Query: 516 EEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFF 575 A + + + A P PAQ + Sbjct: 97 SASAPARADDVEPVEKAPRKTTRTRRPKAAAQEAATEVVPATEAPAADTPAQDTVAENTA 156 Query: 576 GALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDN 635 + + A D R R R Sbjct: 157 AQGEPGRETRAPKTAATKSTRAKAAAKTESADEPGAEAATRAPRTRRARAERTDRVERSG 216 Query: 636 REENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAK 695 +Q A+T +A + + + D + Sbjct: 217 SAAEPVAATTGEQAVADTEPPADSTATASRAPGSSTPRLATTAMLFQAPDLATPRRSRRV 276 Query: 696 ALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVA--PVVEETVAAEP 753 + + P + Q V + AE + AEP Sbjct: 277 VAPAGPPTTPALATKPAETTPTPEIQGGAETQDVAETRPTAERKPASGRARRASRKTAEP 336 Query: 754 IVQEAPAPRTELVKVPLPVVAQTAPEQQEENNAD-NRDNGGMPRRSRRSPRHLRVSGQRR 812 +APA ++ +P PV A E + + L G Sbjct: 337 TTADAPAKAPLVLDLPEPVGAAARVEPTAPEPVELTGEEAAAAEEVAAIEAELVADGVEL 396 Query: 813 RRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVT 872 E L + R + + + Sbjct: 397 VDLGPEDLVDDEDTELEPEDDDRPRRRRRRGGRGRRGGRRPEDEDGDEDDATDADPADAD 456 Query: 873 EVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITES 932 A + EE + E + +++ + S Sbjct: 457 AETEGADEAEDDTTDEGEEGGEDGSRGSSRRRRRRRGSRAERAETQRSRSSDEVTALKGS 516 Query: 933 DVAVAQ 938 A+ Sbjct: 517 TRLEAK 522 Score = 58.0 bits (138), Expect = 2e-06, Method: Composition-based stats. Identities = 32/365 (8%), Positives = 68/365 (18%) Query: 671 EQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVR 730 + RR + A + ++ E ++ Sbjct: 3 SDNTEPTRKPARRRVMRPAGGPAAGTTPDAPVTPRQAEPAALSLTDIVMPERADDAATTE 62 Query: 731 YEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRD 790 V V + ++ P P E+ R Sbjct: 63 PSTRVTVGRSTGAGSRRAVRSLADIELPNGPAAPSASAPARADDVEPVEKAPRKTTRTRR 122 Query: 791 NGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVR 850 + + + +D + + R Sbjct: 123 PKAAAQEAATEVVPATEAPAADTPAQDTVAENTAAQGEPGRETRAPKTAATKSTRAKAAA 182 Query: 851 PQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVV 910 + E E + +E SA +A P Sbjct: 183 KTESADEPGAEAATRAPRTRRARAERTDRVERSGSAAEPVAATTGEQAVADTEPPADSTA 242 Query: 911 ETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAE 970 + + ++ ++ + + P A + ET + Sbjct: 243 TASRAPGSSTPRLATTAMLFQAPDLATPRRSRRVVAPAGPPTTPALATKPAETTPTPEIQ 302 Query: 971 PEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQR 1030 Q A + + A +AP +PE + Sbjct: 303 GGAETQDVAETRPTAERKPASGRARRASRKTAEPTTADAPAKAPLVLDLPEPVGAAARVE 362 Query: 1031 PTFAF 1035 PT Sbjct: 363 PTAPE 367 >UniRef50_UPI0001BC3959 ribonuclease G n=1 Tax=Butyrivibrio crossotus DSM 2876 RepID=UPI0001BC3959 Length = 386 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 107/405 (26%), Positives = 193/405 (47%), Gaps = 24/405 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK+++I +++ V L + + ++ + NIY G++ ++ P++ +AFV+ Sbjct: 1 MKKLVITGYREKNTAV-LFEDGKETEIRVIE-EEGSILNNIYVGRVNKVVPNINSAFVEI 58 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 +LP+ E + D + +G V+VQ+ K+ K +T + Sbjct: 59 SKGIICYLPINEEHVIFL--------NRKNTDKVCQGDIVLVQVVKDAIKTKRPMVTCKL 110 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDR-TELKEALASLELPEGMGLIVRTAGVGKSAEA 179 +++G Y+ + +N G+S++I R ELK L E G IVRT + Sbjct: 111 NISGKYVAISFDNKGIIGVSKKITDSRRIAELKTLLKEYATDE-YGFIVRTEAEHADNKD 169 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + + + +E I + + RPA LI + N + + E++ D P++ E Sbjct: 170 ICDEALKLVNEFEDIVRISSMRPAFTLIKKGGNSVDDMVSSMKLRKEDEVITDIPEIYE- 228 Query: 240 ARQHIAALGRPDFSSKIKLYTGE-IPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 D + LY I L + Y IE I A + V L GG +VI+ TEA Sbjct: 229 --------ALSDKEYTVSLYQDTMISLKTLYNIEKIINDALSKYVWLKRGGYLVIEQTEA 280 Query: 299 LTAIDINSARATRG-GDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 LT ID+N+ + D E+T N+EAA+E+ RQLRLR++ G++V+DFI+M + + Sbjct: 281 LTVIDVNTGKYDGKDKDREDTFLKINMEAAEEVERQLRLRNISGIVVVDFINMKD-DNIK 339 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHH 402 + + L +++D + + ++ GL+E++RQ++ SL E Sbjct: 340 ILTDELCTQLKKDIVKCKYVDYTKLGLVEITRQKIRRSLIEYFTK 384 >UniRef50_A4F9K3 Ribonuclease, Rne/Rng family n=1 Tax=Saccharopolyspora erythraea NRRL 2338 RepID=A4F9K3_SACEN Length = 1075 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 188/712 (26%), Positives = 301/712 (42%), Gaps = 40/712 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 + R ++ ++ ++A+++ L + + S G N+Y G++ + PS+EAAFVD Sbjct: 401 VDRRMVVRENGDQTQIAVLEDNVLVENFVTSAGSGSLVGNVYLGRVQNVLPSMEAAFVDI 460 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + A I+ L G V+VQ+ K+ G+KGA LTT I Sbjct: 461 GRGRNAVLYAGEVDWDAAGL---AGKARRIEQALSTGDSVLVQVTKDPVGHKGARLTTQI 517 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G +LV +P A GISR++ ++R LKE L + +PE G+I+RTA G S EAL Sbjct: 518 SLPGRFLVYVPGG-GATGISRKLPDNERKRLKEILKRI-VPENAGVIIRTASEGTSEEAL 575 Query: 181 QWDLSFRLKHWEAIKKAAESRPA--PFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 D+ WE IK+ A+S A P L+++E +++++ RD +D + + + + Sbjct: 576 DRDVRRLQAQWEVIKEKADSPKAQAPQLLYEEPDLLIKVVRDLFTEDFSAMAVQGNQAWD 635 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 ++ + PD + ++ + G+ +F+ +I QI A R+V LPSGG +VID TEA Sbjct: 636 TIEAYVKHVA-PDLAGRLSKHVGKNDVFTEQRISEQIAKALDRKVWLPSGGYLVIDRTEA 694 Query: 299 LTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQR 357 +T ID+N+ + T GG++EET NLEAA+EI RQLRLRD+GG+IVIDFIDM ++ Sbjct: 695 MTVIDVNTGKFTGSGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRD 754 Query: 358 AVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNE 417 V RL E + +DR R Q++ ++ GL++M+R+R+ L E+ C C G G + + Sbjct: 755 LVLRRLTECLGRDRTRHQVAEVTSLGLVQMTRKRVGTGLLEAYSSTCEHCRGRGLLVSTD 814 Query: 418 SLSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPND 477 ++ + + + Sbjct: 815 PVTHA-------------------------------HTNGSGGGGGGGRRNRNRGKSQEP 843 Query: 478 QMETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDV 537 + + + P P+ E+ E A + P Sbjct: 844 ETPVVEAAPAAEPEAKAEPAAEAPKPEKQEKPQKQEKAERKAAAAAEQPVRADKAPEPAK 903 Query: 538 PPAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPK 597 P AE A PV A P AP P + A S EE PT P+ Sbjct: 904 AEQPVEAERAEPVKATEPAPAPEAVEEPVAEQPEAAAPAAEPVRASQPEEAAPTPASQPE 963 Query: 598 AEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESR 657 A+ + + + R + + T Sbjct: 964 PAAEESSEPAVNGRARRRKVSRPAGSAGAPAAPVVVAVPAKPAESSESQDNGVPSTPPPA 1023 Query: 658 QQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQ 709 A + R+A P + + R D + E S E Sbjct: 1024 AAAVSRRRGRSASRPAGPPVDGGQNRQSDAAADGAAGTSEESGESSGASAES 1075 Score = 48.0 bits (112), Expect = 0.002, Method: Composition-based stats. Identities = 32/229 (13%), Positives = 57/229 (24%), Gaps = 2/229 (0%) Query: 781 QEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASG 840 E + P + + + PT+ A + A G Sbjct: 84 AEPEQGAEDTSRQQAAGKPEEPAQPQAQPGAESARKQQAQPTRDEESAEGKAAESKPAEG 143 Query: 841 KVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPV 900 K + +V + + Q A + PV +AP + + + Sbjct: 144 KATEGEAGDKSAEVAPVKAPNPGFLAAQESEPTRSGAPGLTPVFAAP--QAMFLAPDPKT 201 Query: 901 QVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEV 960 A+P+PE + E TE PQ +D + + Sbjct: 202 APAKPEPEQKQAQAEEEQQETATEAPQQSESADTGEDEGDQGGRRRRRRGRRGRGRGRGA 261 Query: 961 VETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAP 1009 + E AE A + E E + +A Sbjct: 262 EGEQDEQQRETSEADTTEQDGKAEQAEPATEQQSEEAAEAAETDGDSAE 310 Score = 46.5 bits (108), Expect = 0.006, Method: Composition-based stats. Identities = 51/256 (19%), Positives = 69/256 (26%), Gaps = 2/256 (0%) Query: 803 RHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQ 862 H SG R R +S P T + A + P+ + E+ ++Q Sbjct: 819 AHTNGSGGGGGGGRRNRNRGKSQEPETPVVEAAPAAEPEAKAEPAAEAPKPEKQEKPQKQ 878 Query: 863 EEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQP--EVVETTHPEVIAA 920 E+ + A + A + V PV+ EP P E VE E A Sbjct: 879 EKAERKAAAAAEQPVRADKAPEPAKAEQPVEAERAEPVKATEPAPAPEAVEEPVAEQPEA 938 Query: 921 AVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAP 980 A V A A Q EP E E A A Sbjct: 939 AAPAAEPVRASQPEEAAPTPASQPEPAAEESSEPAVNGRARRRKVSRPAGSAGAPAAPVV 998 Query: 981 VVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGA 1040 V + + + A A R P P Q GA Sbjct: 999 VAVPAKPAESSESQDNGVPSTPPPAAAAVSRRRGRSASRPAGPPVDGGQNRQSDAAADGA 1058 Query: 1041 AGGHTATHHASAAPAR 1056 AG + +S A A Sbjct: 1059 AGTSEESGESSGASAE 1074 >UniRef50_A7HJB9 Ribonuclease, Rne/Rng family n=1 Tax=Fervidobacterium nodosum Rt17-B1 RepID=A7HJB9_FERNB Length = 463 Score = 395 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 150/490 (30%), Positives = 249/490 (50%), Gaps = 29/490 (5%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M +L + E+ + AL++ L ++ I E NIY GKI + P+LEAAFV Sbjct: 1 MILLLKKDGENEKAQAALIENGILAEIFISDDDEESIAGNIYIGKIEKFIPALEAAFVKL 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 + + FL +K+I EY + L+E Q+++VQI KE KG +TT I Sbjct: 61 PDDENAFLRIKDIKNEYLNFFGISK--------LQECQKILVQIKKEGGNTKGPQVTTNI 112 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGD-DRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 + G Y+V MP + ++ GISR+I + DR L+E L+ G I+RT+ V E Sbjct: 113 GIPGRYIVYMPFS-KSIGISRKITNENDRKHLREVGEKLKSKYNCGFILRTSCVESKEEY 171 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 ++ + K WE I + LIH+ES+ R++LR+++ +++ ++ K+ + Sbjct: 172 IEKEAEELHKKWEEIVNTFKRSRKTKLIHKESDSDEFVVREFLRKEVEQVITNSQKLKVI 231 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 ++ +P+ K+ E F Y + QI+++ +R LPSGG IVID TEAL Sbjct: 232 SKDF-----KPNIPVKLI----ESDPFEEYNVYKQIQNSMKRIHELPSGGEIVIDKTEAL 282 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+NS T EE + N+EAA EI R +RLR++GG+I+IDFIDM ++ + Sbjct: 283 TIIDVNSGHYTSSESHEELSKKINIEAAKEICRLIRLRNIGGIIIIDFIDMKNEENRLEI 342 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 N ++ +D+ +I++ ++ GLLEM+R+R S SL E +CP C+GTG V + + Sbjct: 343 LNAIKSETLKDKNKIEVYGFTQLGLLEMARKRTSKSLDEKMTALCPVCNGTGHVMSPKFV 402 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 +L+ ++ +N +EV + ++ + + V I + Sbjct: 403 IERLLKEVKN--KPKNAKEVIIKFHPSLKEFINK-------DLLRKTFKVPIHIHF-THL 452 Query: 480 ETPHYHVLRV 489 + Y + Sbjct: 453 DPESYEITWK 462 >UniRef50_C9L8D6 Ribonucleases G and E n=1 Tax=Blautia hansenii DSM 20583 RepID=C9L8D6_RUMHA Length = 400 Score = 395 bits (1013), Expect = e-108, Method: Composition-based stats. Identities = 115/409 (28%), Positives = 206/409 (50%), Gaps = 18/409 (4%) Query: 1 MKRM--LINATQQEE----LRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLE 54 MK++ LI L AL R+ L+ S + NIY GK+ I+ +++ Sbjct: 1 MKKLSKLILTEMNYRNTPILVAALEKEGRICQLNPMSLNSDSILGNIYIGKVKNIQKNIQ 60 Query: 55 AAFVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGA 114 AAF++ + + E A F +VL+ G E+IVQ+ KE +K Sbjct: 61 AAFIEIENGIMCYYSMAEKASPCF-------VNVKKNNVLKIGDEMIVQVSKEGIKSKLP 113 Query: 115 ALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVG 174 +++ ++ G YLVL + G S +++ +++ +++E L ++PE +G+IVRT Sbjct: 114 YVSSNLNFTGRYLVLTSE-RKELGFSGKLKKEEKKQIREILKD-KIPENVGIIVRTNCRD 171 Query: 175 KSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNP 234 E + +L +K +EA+ + +SR ++ + V+ ++ QD+ EI+ D Sbjct: 172 AQEEEILHELEELMKRYEAVLQKGKSRVCFSVLEKSMPEYVQILQNLYSQDLEEIVTDKQ 231 Query: 235 KVLELARQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVI 293 ++ E A Q++ ++ Y ++ PL+ Y ++ E A V L SGG +VI Sbjct: 232 ELYECAVQYLKGY--KQQEKIVRYYEDKLLPLYKLYNLQKAFEQAQNERVWLKSGGFLVI 289 Query: 294 DSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPV 353 TEA ID+N+ + T D++ET NLEAA EIA QLRLR+L G+I+IDFI++ Sbjct: 290 QQTEAFVCIDVNTGKCTSKKDMQETFRKINLEAAKEIAWQLRLRNLSGIILIDFINLERA 349 Query: 354 RHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHH 402 + + L++ + QD + + ++ ++E++R+++ SL E Sbjct: 350 EDKEELMQTLQKYLWQDSIKGTVVDMTELNIVEVTRKKVRKSLAEELKE 398 >UniRef50_Q7U4C5 Ribonuclease E n=16 Tax=cellular organisms RepID=Q7U4C5_SYNPX Length = 663 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 168/650 (25%), Positives = 268/650 (41%), Gaps = 21/650 (3%) Query: 1 MKRMLINATQQEELRVA-LVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 M + ++ A E+LR+A ++ +R+ +L + + ++Y G + + P ++AAFV+ Sbjct: 14 MPQQIVIA---EQLRIAAVLTDERVDELIVAQG--RYQIGDVYLGTVENVLPGIDAAFVN 68 Query: 60 YGA-ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 G E++GF+ + ++ G I ++L Q+V+VQ+ KE G KG LT Sbjct: 69 IGESEKNGFIHVTDLGPLRLK-----KGSAGITELLEPRQKVLVQVMKEPTGTKGPRLTG 123 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAE 178 ++L G YLVL P+ ISRRI + AL L P G GL++RT G + + Sbjct: 124 NLALPGRYLVLQPHGQGVN-ISRRISSEAERNRLRALGVLIKPPGAGLLIRTEADGIAED 182 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 L DL L+ WEAI++AAE+ P L++++ + I R RD+ D+ +++D P + Sbjct: 183 QLIDDLESLLRQWEAIQQAAETAAPPVLLNRDEDFINRILRDHTSTDLVRVVVDEPAAVA 242 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 + A ++ ++ L H+++ + I A + V LPSGG ++I+ TEA Sbjct: 243 RVSSFLGAEADKVL---VEAHSEPSELLEHFKVNAAIRDALKPRVDLPSGGYVIIEPTEA 299 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 LT ID+NS TR + ET TN EAA EIARQL+LR++GG+I+IDFIDM R Q Sbjct: 300 LTVIDVNSGSFTRSANARETVLWTNCEAAIEIARQLKLRNIGGVIIIDFIDMDSRRDQLQ 359 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 + AVR D AR QI+ ++ GL+E++R+R ++ E CP C G G V Sbjct: 360 LLEHFTTAVRDDAARPQIAQLTELGLVELTRKRQGQNIYELFGRACPSCGGLGHV----- 414 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 L L++ A A +A + + V +D Sbjct: 415 AVLPGKDLLQPLATATGLVRSAASARAEVAPPSETSGNGRRRRGGRGRAAQDNLPVLSDT 474 Query: 479 METPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVP 538 T V E + E P +V Sbjct: 475 DATEAPEVSTEEAQEPALARRQDPELVAVPMTPEQEEVYGTLGLNPILLLDEPPESENVM 534 Query: 539 PAPTPAEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKA 598 A V + A A + G+ + A Sbjct: 535 VRVVRPGEDADAVLEQARQQLAATAGRRRRRGGRGGRGSSRGNSGASSPAPLDASEVVVA 594 Query: 599 EAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQ 648 E +Q D++ D E + + Sbjct: 595 EPPVVEEQPLMVEITPLEADQSVVLDEVPPLPEPTPAVVVDGSEATAEDT 644 >UniRef50_O67311 Cytoplasmic axial filament protein n=1 Tax=Aquifex aeolicus RepID=O67311_AQUAE Length = 458 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 124/468 (26%), Positives = 210/468 (44%), Gaps = 31/468 (6%) Query: 18 LVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEIAREY 77 + G L D +E + + KG + + P+L+ F+D G + L Sbjct: 20 VFLGTELKDFKVERRKEKYRTGAFLKGLVKKECPALDGFFLDVGLTKEALL--------- 70 Query: 78 FPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAG 137 LR G VIVQ+ ++ER KGA +T +S+ G Y+V P + Sbjct: 71 --------QEKKNCKNLRIGDSVIVQLKRKERDLKGAKVTCKVSIPGKYIVYFPETKKLN 122 Query: 138 GISRRIEGDDRTE-LKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKK 196 S++++G TE LK+ L EL + G+I+R + + + E + +L WE++K+ Sbjct: 123 -FSKKLKGFAFTEDLKKILKE-ELNDREGVIIRASAISATKEQILKELQELRNKWESLKE 180 Query: 197 AAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKI 256 A+ ++ + ++ DY I I +DN V + K+ Sbjct: 181 KAKKVNK-GILEEGQPQFIKTILDYWGF-IKNIYVDNGDVWGEIVEFFGD----SIKHKL 234 Query: 257 KLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIE 316 + L + I+ + V L +GG IVI+ TEALT+ID+NS T G +E Sbjct: 235 RYVNTIDTLPGGITLNQLIDKLTSKTVWLKNGGFIVIEQTEALTSIDVNSGE-TCGKSLE 293 Query: 317 ETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQI 376 ETA+N NLEA E+A+Q++ R+L G+I++D IDM + + ++ + +++ + RI+I Sbjct: 294 ETAYNVNLEALKEVAKQIKFRNLSGIIIVDLIDMKKEKTKESLLSEVKKIFEGEGLRIKI 353 Query: 377 SHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENT 436 I++ GLLEM+++ S S+ E CP C G G V+ E IL +E+ K Sbjct: 354 YGITKLGLLEMTKKWESESIYEVIGETCPHCQGKGFVKSKEF----ILHTLEKALEKTRG 409 Query: 437 QEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHY 484 +++ V +A + V Q+ Y Sbjct: 410 KKIVLKVHPSVAKTVEEFINEKNLKDWITIKEVWEERSDYFQLSYSDY 457 >UniRef50_A6WDN2 Ribonuclease, Rne/Rng family n=1 Tax=Kineococcus radiotolerans SRS30216 RepID=A6WDN2_KINRD Length = 1244 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 144/407 (35%), Positives = 233/407 (57%), Gaps = 11/407 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 ++R+++ Q ++ ++ +++ L + N+Y G++ + PS+EAAF+D Sbjct: 732 VERVMVVRQQADKTQIGVLEDGILVEHYGAKLAQTTMVGNVYLGRVQNVLPSMEAAFIDV 791 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + I+ L+ G V+VQ+ K+ G+KGA LT+ + Sbjct: 792 GKGRNAVLYAGEVNWDAAGLEGQPR---RIEAALKSGDPVLVQVTKDPVGHKGARLTSQV 848 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLV +P GISR++ +R LK+ L + +PEG G+IVRTA G + E L Sbjct: 849 SLPGRYLVYVPRGSMT-GISRKLPDTERARLKKVLKQV-VPEGAGVIVRTAAEGVAEEEL 906 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 D+ WEAI+ A S+ AP L+H E ++ VR RD +D +++I + E Sbjct: 907 AADVQRLQATWEAIQAKASSKNAPVLLHGEPDLTVRVVRDVFNEDFTKLVISGDEAWETV 966 Query: 241 RQHIAALGRPDFSSKIKLYTGE----IPLFSHYQIESQIESAFQREVRLPSGGSIVIDST 296 R ++ + PD + +++ + G +F+H++I+ Q++ A R+V LPSGGS+VID T Sbjct: 967 RGYVDDVA-PDLAERLERWDGGAGGAEDVFAHHRIDEQLQKALGRKVWLPSGGSLVIDPT 1025 Query: 297 EALTAIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRH 355 EA+ +D+N+ + T GG +EET NLEAA+EI RQLRLRD+GG+IVIDFIDM + Sbjct: 1026 EAMHVVDVNTGKFTGAGGTLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESN 1085 Query: 356 QRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHH 402 + V RL E + +DR + Q++ ++ GL++M+R+R L Sbjct: 1086 RDLVLRRLVECLGRDRTKHQVAEVTSLGLVQMTRKRTGQGLAAVLDE 1132 Score = 50.3 bits (118), Expect = 4e-04, Method: Composition-based stats. Identities = 59/563 (10%), Positives = 104/563 (18%), Gaps = 8/563 (1%) Query: 492 GEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTPAEPAAPVV 551 E + + P E A T A Sbjct: 82 RERSGRPAPAATSSGRRRPGAPGRAERAVPHCQWSSVPHTGRPARRRDRRPARGSRAAPR 141 Query: 552 APAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPERQQDRRKP 611 + + P + E+ + P + R Sbjct: 142 SSGRTSQAPRPTRWTSTAGGTSGGPRRARARWCTEDFRRVRDDPPGDSDQDARATVGSPV 201 Query: 612 RQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADE 671 +++R T E + R RR+ +R Q E A Sbjct: 202 ERSSRASGAPVTTTPEENAAPTAEGAATARPRRRRAASRPAGPPARVQPESAPAEPAAPA 261 Query: 672 QQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRY 731 EA A+ E P + + Sbjct: 262 ASESTPAVEPAAEPVVEAPAVEAPAVEAPAAETPAAEVPVVETPAVEAPVEAVAAAEPAP 321 Query: 732 EQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDN 791 + ETV V +E P A + R Sbjct: 322 RRRTRRATRKVAAPAETVVEPAAVAAPAEVPSEPAPAPETAAEPVAEAPEAPAAPARRRR 381 Query: 792 GGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRP 851 V R + +P + P Sbjct: 382 SRKAVAPAPLAEAPAVEAPAVPEVEAPRTEVVAVAEDAPVEETPVETPVAAAVEAPAAPA 441 Query: 852 QDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVE 911 E+ + + A + + E A + P Sbjct: 442 PVAATAPAAPAEQPDLMDDPVLLRAAGFAQGRRAPSEGERAADAAARATALFFQAPVDEA 501 Query: 912 TTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEP 971 T A+A P V A+ ++ + ++ ++ A + + Sbjct: 502 PTRRSRRASAPAGPPPVSDREAPALDEDDDLLLDDLLPGADDEAGEDAPELDGDAP---- 557 Query: 972 EVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRP 1031 A E + T A E EA + + Sbjct: 558 ----GSAEDGDEEQDEDGGAPRRRRRRGGRGRRSRTREDGEADTDEEPTEAGEVGEARDG 613 Query: 1032 TFAFEGKGAAGGHTATHHASAAP 1054 + E + A P Sbjct: 614 SDDEEPEAGASASDDEDEDGEEP 636 >UniRef50_A9RK39 Predicted protein n=1 Tax=Physcomitrella patens subsp. patens RepID=A9RK39_PHYPA Length = 727 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 136/502 (27%), Positives = 230/502 (45%), Gaps = 27/502 (5%) Query: 41 IYKGKITRIEPSLEAAFVDYGAER---HGFLPLKEIAREYFPANYSAHGRPNIKDVLREG 97 I + + F D E+ E R+ P + + + + EG Sbjct: 215 IARSIVVDRVSGEAENFKDSPEEKVQVKKLSKAWEPHRQGSPITVNFGRKFSKWRNVEEG 274 Query: 98 QEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALAS 157 +IVQ+ KE G KG LT F SLAG + VL+P G+S RI G +R LK LA Sbjct: 275 MPIIVQVKKESMGKKGPRLTAFPSLAGRFWVLIPRGNSV-GVSARITGPERRRLK-LLAQ 332 Query: 158 LELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKA----------AESRPAPFLI 207 PE +G+ VRT +G E L+ DL+ + W+ I + E P L+ Sbjct: 333 KLQPEDLGITVRTEAIGHEQEELERDLTRLMDAWKEIMEKAAAAAVAVERGEEAAVPVLL 392 Query: 208 HQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEIPLFS 267 H+E + RD + + +++D+ + + ++ + P +++ LY+G++P+F Sbjct: 393 HREMGQTLTIIRDLFTEKVSRVVVDSAQSFQEVINYLQEVA-PHLMNRVVLYSGKVPIFD 451 Query: 268 HYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGD--IEETAFNTNLE 325 + +ES ++ F V+LP+GG +V+ TEAL +ID+N G E N NL Sbjct: 452 KFNVESDLDKFFSERVKLPNGGYLVMQETEALVSIDVNGGTGMLGHSMKQREAILNVNLA 511 Query: 326 AADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLL 385 AA +IA ++RLRD+GG+IV+DFIDM ++ V +R A+++DR+++ IS IS +GL+ Sbjct: 512 AAKQIAHEIRLRDIGGIIVVDFIDMDNHEDEKLVYEEMRRAIQRDRSKVSISEISEYGLM 571 Query: 386 EMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENT--------Q 437 EM+R+R+ PS+ + H C C GTG V E+ I R I Sbjct: 572 EMTRKRVRPSVTYTIHSSCACCKGTGRVEALETTLSKIERAIRRVLADHPDVSSDASTWP 631 Query: 438 EVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRVRKGEETPT 497 ++ V + +L + K+ + + V + ++ + V V + + Sbjct: 632 QILLRVEPSMLEFLKSWKKKRIIQLGHSLR-VWINLKLGMELSHGQFEVTEVPRTSSKKS 690 Query: 498 LSYMLPKLHEEAMALPSEEEFA 519 + + + + Sbjct: 691 SAGVPSASPSTISQQEAAVTAS 712 Score = 80.7 bits (197), Expect = 3e-13, Method: Composition-based stats. Identities = 22/96 (22%), Positives = 42/96 (43%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGA 62 +LIN ++ R+A+++ +++ + IE + + NIY G++ ++ P + FVD G Sbjct: 73 EILINTSECTMQRMAILENKKVVEFSIEPVNTKVQVGNIYLGRVKQLLPGMSGVFVDIGG 132 Query: 63 ERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQ 98 R L + Y G D + G Sbjct: 133 PRLALLDIARNQYPYTFPPVCGSGNHLSTDSVSGGS 168 >UniRef50_C6LLP4 Cytoplasmic axial filament protein n=1 Tax=Bryantella formatexigens DSM 14469 RepID=C6LLP4_9FIRM Length = 408 Score = 388 bits (995), Expect = e-106, Method: Composition-based stats. Identities = 124/407 (30%), Positives = 192/407 (47%), Gaps = 13/407 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK LI + + AL R +L + NIY GK+ + +++AAFV+ Sbjct: 1 MKNKLIITRLWDGIATALYLDGRAAELSFDRETETPLPGNIYIGKVKNVVKNIQAAFVEI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 +LPL E A YF ++ L G E++VQI +E K +T I Sbjct: 61 EDGISCYLPLSEKAEPYFTNKTNSPR-------LVAGDELLVQIAREGVKTKAPTVTANI 113 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEG-MGLIVRTAGVGKSAEA 179 S G YLVL + GIS ++ +R L++ L PEG G I+RT E Sbjct: 114 SFPGKYLVLTSGKTQT-GISAKLAKAERERLQQIAGRL--PEGNFGWILRTNAAEAEEEE 170 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + + K +E I + A R +++ + +D + + EIL D+ + + Sbjct: 171 ILREAETLAKRFEDICRTARYRTCKSCLYRSPAAWLAHLKDIRQTECEEILTDDQGLYDR 230 Query: 240 ARQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 + ++A P + K+ Y + PL+ Y +E E A + V L SG +VI TEA Sbjct: 231 LQAYLAE-NLPADAEKLSFYEDRLLPLYKLYSLEGAFEEALRERVWLKSGAYLVIQPTEA 289 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 LTAID+N+ + RG ET NLEAA E ARQ+RLR+L G+I+IDFI+M ++ Sbjct: 290 LTAIDVNTGKCERGKKASETFRKINLEAAREAARQIRLRNLSGIILIDFINMDSKEEEQR 349 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCP 405 + L +++D + I+ GL E++R+R+ L E P Sbjct: 350 LLAALDAELQKDPVKAYAVDITPLGLAEVTRKRVQKPLAEKMRQSVP 396 >UniRef50_A7H8A5 Ribonuclease, Rne/Rng family n=1 Tax=Anaeromyxobacter sp. Fw109-5 RepID=A7H8A5_ANADF Length = 740 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 149/464 (32%), Positives = 235/464 (50%), Gaps = 5/464 (1%) Query: 71 KEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLM 130 + R + NI+D+L+EGQEVIVQ+ K+ G KGA +T+ ISL G +LV M Sbjct: 281 ERGNRNGHEREKRSKEPKNIQDLLKEGQEVIVQVAKDPIGTKGARITSHISLPGRHLVFM 340 Query: 131 PNNPRAGGISRRIE-GDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLK 189 P GISRRIE +R L+E + + P+G G IVRT A L+ D+ F ++ Sbjct: 341 PTVDHI-GISRRIEKDSERRRLREIVDRMR-PDGTGFIVRTVAENVEAGKLEADIRFLIQ 398 Query: 190 HWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGR 249 W I + + AP L+H + ++I+RA RD D+G+++ID+ E + + Sbjct: 399 VWNEIIRTKDKVSAPALLHGDLDLILRATRDLFTADVGKLVIDDRDEYERILRFVHE-QA 457 Query: 250 PDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARA 309 P S+I+ Y GE P+F Y IE +++ A QR+V L SGG I++D EALTAID+NS R Sbjct: 458 PHLESQIEYYRGEEPIFDAYGIEQELKRASQRKVWLKSGGYIIMDQAEALTAIDVNSGRY 517 Query: 310 TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQ 369 ++EET N+EAA EI QLRLR++GG+I+IDFIDM +++ V L++A+ + Sbjct: 518 VGKKNLEETITKINVEAAKEIVYQLRLRNIGGIIIIDFIDMDKPQNRDKVFKALQDALGR 577 Query: 370 DRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEE 429 D+A+ + IS GL+EM+R+R+ S+ + C C G G ++ +++ I R I Sbjct: 578 DKAKTNVLKISELGLVEMTRKRVRESVTRVMNEPCSYCEGKGHLKSKITITYEIFREIRR 637 Query: 430 EALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVLRV 489 EA+ + +A L +R + + R + + P + + Sbjct: 638 EAVHFPEPVLVVNCHPEVARILQGSEREELRYLMDRFNKT-IQVKPQSGYHQEQFDIYGR 696 Query: 490 RKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFA 533 ++ + P + + P A Sbjct: 697 QERIDQPRDRERERGRGRDRDRGGRGKSEEPATPPADAAGGEER 740 Score = 82.7 bits (202), Expect = 8e-14, Method: Composition-based stats. Identities = 23/75 (30%), Positives = 42/75 (56%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 +L+ E RVALV+ +++ +E + NIYKG++ R+ P ++AAFVD G Sbjct: 4 NSILVINAAGAETRVALVENNTIHEYYLERKREKGIVGNIYKGRVVRVLPGMQAAFVDIG 63 Query: 62 AERHGFLPLKEIARE 76 ++ FL + ++ + Sbjct: 64 LDKAAFLYVGDVYGD 78 >UniRef50_A6MVU3 Ribonuclease E n=1 Tax=Rhodomonas salina RepID=A6MVU3_RHDSA Length = 429 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 111/403 (27%), Positives = 180/403 (44%), Gaps = 11/403 (2%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + L+ A Q + V + + L IE +IY G + + PS+ AAF+ Sbjct: 1 MVKTLVLAEQNKIGSV-YDNDTVITQLIIERGT--YHIGDIYIGIVETVLPSINAAFIIL 57 Query: 61 GAERH-GFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 + GF+ + + NI + L V+VQ+ KE G KG +T Sbjct: 58 DYSENNGFIHINNLGHL-----KKKTNSTNITNHLSCNSIVMVQVLKEPNGQKGPTVTGD 112 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 I+L G YL L+P SR E ++ L +L P+ G+++ + S Sbjct: 113 ITLRGRYLTLLPFEEDI-FFSRDFESNENIVYLRLLFTLLKPKSTGILINKKAIHASINN 171 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 + D L W++I + APFLI + N I + + + + IL+D+ + + Sbjct: 172 IIQDFYSLLYEWDSICHNLNYQSAPFLISRNKNFISKVLQKVYSEKVDTILVDSKQGSKK 231 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLF-SHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 + + ++ Y F Y ++ + Q + L GG I+I+ TEA Sbjct: 232 IASTVTRWIKQKNNTLSIKYFENHNFFVRDYNLDLIVYDLLQSRINLLGGGYIIIEKTEA 291 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 LT ID+NS + ET N +AA +IAR LRLR++ G+I++DFIDM + Q A Sbjct: 292 LTTIDVNSGSFNYLNNPRETILLVNRKAAKQIARHLRLRNISGVIIVDFIDMKNQQDQLA 351 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSH 401 + ++QD R +I S GL+E++R+R SL E Sbjct: 352 LLLHFDSFLKQDEQRPRIIQFSELGLVELTRKRQGRSLLEMFS 394 >UniRef50_A8VZD2 Alanine racemase n=1 Tax=Bacillus selenitireducens MLS10 RepID=A8VZD2_9BACI Length = 473 Score = 381 bits (978), Expect = e-104, Method: Composition-based stats. Identities = 130/483 (26%), Positives = 230/483 (47%), Gaps = 16/483 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MKR + T E R A+++ R+ + + + I G+IT I ++AAF+D Sbjct: 1 MKRTIAVHTGLTEARGAVIEDGRVTEWLMSPGPTRLETGMIITGQITDIHDGMDAAFIDI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G+++ GFL E+ R I + +G +++++ + KG LT I Sbjct: 61 GSDKRGFLHKSELNRP------DKGEDVPISRQVTKGAYLLLEVLRPGTDTKGPKLTEKI 114 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 S +G Y V MP + +S+++ + E A L E GLI+RT + E + Sbjct: 115 SFSGKYAVYMPFSRYV-AVSKKMSSESVRESWRAFGKERLQEDEGLIIRTNAEEEDPEVI 173 Query: 181 QWDLSFRLKHWEAIKKAAESRP-APFLIHQESN-VIVRAFRDYLRQDIGEILIDNPKVLE 238 ++ + +K+A +P +H + + + R RD+L + E++ D ++ E Sbjct: 174 DREIDLLRAKADEVKRAFLDQPIKAGAVHVDPSALAARISRDFLADEDTEVICDGRQLYE 233 Query: 239 LARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEA 298 + + + + Y+ E + + V LP+GGS++I+ TEA Sbjct: 234 EL---VREREVMPLGASVSYTREN--VARLYEFERMMMQTVRPYVWLPNGGSLLIEETEA 288 Query: 299 LTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRA 358 +T ID+NS R T ++ +TA+ TNL+AA IAR+LRLR++ G+I+IDFIDM ++ Sbjct: 289 MTVIDVNSGRFTGKENLRKTAYQTNLQAAKVIARELRLREVSGIILIDFIDMDTDDDRKD 348 Query: 359 VENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNES 418 V LR+ +QDR R+ + + GL+EM+R++ +GE C C GTG V Sbjct: 349 VLKTLRQGCKQDRTRVNVIGFTSLGLVEMTRKKSRMPIGEIMKEPCGCCGGTGRVDTANE 408 Query: 419 LSLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQ 478 + ++ EA++ T+ + + V + L + + +AI+ R GVR + + Sbjct: 409 QLYRVSEALQ-EAVQGKTESLWLDLNVRLYEALTSNQEDWASAIKARI-GVRVYVTQSAS 466 Query: 479 MET 481 Sbjct: 467 DTP 469 >UniRef50_C4Z0A7 Ribonuclease G n=1 Tax=Eubacterium eligens ATCC 27750 RepID=C4Z0A7_EUBE2 Length = 409 Score = 378 bits (970), Expect = e-103, Method: Composition-based stats. Identities = 94/423 (22%), Positives = 199/423 (47%), Gaps = 36/423 (8%) Query: 1 MKRMLINATQQEELRVAL-VDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVD 59 M+ I ++ + ++ NIY G++ + ++ AAF++ Sbjct: 1 MEYKYIITDINNKIFCCIYTSDNTC--HYLKPLDSGSVVGNIYVGRVENVVKNINAAFIE 58 Query: 60 YGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTF 119 ++ + +++ F + + +G ++V++ E K A +++ Sbjct: 59 IEDKQKCYYSIQDNKAPIFFNEKNNP-------AICQGDRILVKVTTEPLKTKPAKVSSK 111 Query: 120 ISLAGSYLVLMPNNPRAGGISRRIEGDDR-TELKEALASLELPE--------------GM 164 I L G+Y V + N+ + IS++I+ ++ +E+K+ +A + + + Sbjct: 112 IELTGNYAV-VSNDVKGVHISKKIKSNETISEIKKRVADILIQKQREAIEKTGYDYLSNF 170 Query: 165 GLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQ 224 G+I+R+ + + D+ + + + A L+H++ + + Sbjct: 171 GIILRSGCADADTDDIIKDVKALCNEYTDMLRKAVFSKFYTLVHKDRPEYIEEIVHLSGK 230 Query: 225 DIGEILIDNPKVLELARQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREV 283 D E++ D P + ++ I++Y E+ PL+ Y IE +I++A ++V Sbjct: 231 DRVEVITDIPDIYNELETYLPRSSNMS----IRMYKDELWPLYKLYSIEKEIDTALSKKV 286 Query: 284 RLPSGGSIVIDSTEALTAIDINSARATRGGD----IEETAFNTNLEAADEIARQLRLRDL 339 L SGG ++I+ TEAL+ ID+NS + IE +A TNLEAAD++ +Q+++R+L Sbjct: 287 WLKSGGYLIIEQTEALSVIDVNSGKNVTKAKSMEAIEASALKTNLEAADKLCQQIKVRNL 346 Query: 340 GGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGES 399 G+I++DFI+M R+ + L+ ++D I I++ GL+E++R+++ SL ES Sbjct: 347 SGIIIVDFINM-NQRNCDILMEHLKFLAKKDIVNTTIVDITKLGLVEITRKKIGKSLSES 405 Query: 400 SHH 402 + Sbjct: 406 LNK 408 >UniRef50_D1AAW2 Ribonuclease, Rne/Rng family n=1 Tax=Thermomonospora curvata DSM 43183 RepID=D1AAW2_THECD Length = 1041 Score = 377 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 160/544 (29%), Positives = 275/544 (50%), Gaps = 10/544 (1%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 ++R+++ + E ++A+++ L + ++ H+ N+Y GK+ + PS+EAAFVD Sbjct: 507 VERVMVICQRGERTQIAVLEDGVLVEHYVDRASHQSYVGNVYLGKVQNVLPSMEAAFVDI 566 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G R+ L E+ + I+ L+ GQ V+VQ+ K+ G+KGA LT+ I Sbjct: 567 GKGRNAVLYAGEVNWDVAGLVGQPR---RIEQALKSGQSVLVQVTKDPVGHKGARLTSQI 623 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 SL G YLV +P+ GISR++ +R+ LK+ L + +P+ G+IVRTA G + E L Sbjct: 624 SLPGRYLVYVPDGSMT-GISRKLPDKERSRLKQVLKKI-MPDNAGVIVRTAAEGATEEEL 681 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 D++ WE I K A++ AP L+H E ++ +R RD +D ++++ ++ Sbjct: 682 AGDIARLSAQWEHIHKQAKTASAPALLHGEPDLTIRVVRDIFNEDFSKLVVSGDTAWDMV 741 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 +++ + P + +++ + + + S Y+I+ QI A +R+V LPSGGS+VID TEA+T Sbjct: 742 SEYVGYVA-PHLAERLERWESDQDVLSAYRIDEQIAKALERKVWLPSGGSLVIDRTEAMT 800 Query: 301 AIDINSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 +D+N+ + T GG++EET NLEAA+EI RQLRLRD+GG+IVIDFIDM ++ V Sbjct: 801 VVDVNTGKFTGQGGNLEETVTRNNLEAAEEIVRQLRLRDIGGIIVIDFIDMVLESNRELV 860 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESL 419 RL E + +DR + Q++ ++ GL++M+R+R+ L E+ C C+G G + Sbjct: 861 LRRLLECLSRDRTKHQVAEVTSLGLVQMTRKRVGQGLLEAFSEPCECCNGRGIHIQTTPV 920 Query: 420 SLSILRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQM 479 + + + + EKR+A + Q P + Sbjct: 921 EHGSD---KSGGRRRKRKGDVERAVEEKLAKHEAEKRAAAKREQETQAASAEPAQPAGEP 977 Query: 480 ETPHYHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPP 539 + + + E + +P R+R + T +V Sbjct: 978 AQEPAQTVAEVPQAAPAAVETAEAETAEPPVEVPDAAAGNGRRRVRRSRAKTKDKAEVAG 1037 Query: 540 APTP 543 + Sbjct: 1038 SAES 1041 Score = 56.5 bits (134), Expect = 6e-06, Method: Composition-based stats. Identities = 64/467 (13%), Positives = 111/467 (23%), Gaps = 6/467 (1%) Query: 579 KALFSGGEETKPTEQPAPKAEAKPERQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREE 638 + ++ T PA P R R+ R + S Sbjct: 3 ENDRENDNDSAGTGSPAETTTGSPVITTVRSGRRRAASRPAGPPPEIDDIPAVISPAASA 62 Query: 639 NRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRNDDKRQAQQEAKALN 698 R + + + Q +A A E+ S + D + + + Sbjct: 63 TPRTEATGADRDRQEPATEQTETAQAQAEPAPEEGDEPAGASAEQTDGAEEQPETTEEQA 122 Query: 699 VEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEA 758 Q+ E + ++ + E AV P E V Sbjct: 123 EAAAERQDAEPVPPETAAEQAEHAQEAEEPAEAAAEGDEAAVERPDAEPAPQEPAAVPRP 182 Query: 759 PAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDE 818 + R E P + + + D + + ++ R Sbjct: 183 QSARDEEETAQEPDHDEPEAAEAAKETIDPVRSPFGAVSAVQTTEPSHEGAAYRPAGPPP 242 Query: 819 RYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAA 878 P P+P A PE + P + + + EV + + Sbjct: 243 PVPLVPPVPTLDVPAQPETPTVPSVTFQPPMVVFQ--PPQPIPKAEVPPKHAAVVEDESE 300 Query: 879 AIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQ 938 IEPV E A + E + +P+ ++ A+ Sbjct: 301 DIEPVDLDEEDEGTALRRRRRRRRGGRGRGKSADKGGEKAEESADGEPEAAEGTEEQQAE 360 Query: 939 EVAE--QAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVE 996 E QA P +P+ E EE A+ A + A A Sbjct: 361 AAEEDRQARPGEQPEAEPETAEEGGGETAGAEQPEGETAEAAPEGAEDTEAAGAAPATTG 420 Query: 997 PEVTVEHNHAT--APMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAA 1041 AP+ P H R + A Sbjct: 421 TSRRRRRRRRRSGTAEVEEQAPDDPPNTVVHVRPPRELRDVTDEVQA 467 Score = 54.2 bits (128), Expect = 2e-05, Method: Composition-based stats. Identities = 46/443 (10%), Positives = 93/443 (20%), Gaps = 1/443 (0%) Query: 605 QQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTE 664 +++ R+ ++ + T + R R A + Sbjct: 2 RENDRENDNDSAGTGSPAETTTGSPVITTVRSGRRRAASRPAGPPPEIDDIPAVISPAAS 61 Query: 665 KARTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQ 724 + A R + + Q A ++ + ++ QP + Q Sbjct: 62 ATPRTEATGADRDRQEPATEQTETAQAQAEPAPEEGDEPAGASAEQTDGAEEQPETTEEQ 121 Query: 725 LNQKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEEN 784 + + A E EA A E Sbjct: 122 AEAAAERQDAEPVPPETAAEQAEHAQEAEEPAEAAAEGDEAAVERPDAEPAPQEPAAVPR 181 Query: 785 NADNRDNGGMPRRSRRSPRHLRVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWI 844 RD + + + + S + T Sbjct: 182 PQSARDEEETAQEPDHDEPEAAEAAKETIDPVRSPFGAVSAVQTTEPSHEGAAYRPAGPP 241 Query: 845 RYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAE 904 + P ++ + E V + + P+ P + + Sbjct: 242 PPVPLVPPVPTLDVPAQPETPTVPSVTFQPPMVVFQPPQPIPKAEVPPKHAAVVEDESED 301 Query: 905 PQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVV-EPQEETADIEEVVET 963 +P ++ + + + + + E EP+ E+ E Sbjct: 302 IEPVDLDEEDEGTALRRRRRRRRGGRGRGKSADKGGEKAEESADGEPEAAEGTEEQQAEA 361 Query: 964 AEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAP 1023 AE A P AE A T E A T A Sbjct: 362 AEEDRQARPGEQPEAEPETAEEGGGETAGAEQPEGETAEAAPEGAEDTEAAGAAPATTGT 421 Query: 1024 RHSDWQRPTFAFEGKGAAGGHTA 1046 +R + + Sbjct: 422 SRRRRRRRRRSGTAEVEEQAPDD 444 Score = 43.0 bits (99), Expect = 0.069, Method: Composition-based stats. Identities = 34/306 (11%), Positives = 58/306 (18%), Gaps = 4/306 (1%) Query: 752 EPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHLRVSGQR 811 E + + + G P P + + Sbjct: 3 ENDRENDNDSAGTGSPAETTTGSPVITTVRSGRRRAASRPAGPPPEIDDIPAVISPAASA 62 Query: 812 RRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMV 871 R P T + + A + + +E+ Sbjct: 63 TPRTEATGADRDRQEPATEQTETAQ-AQAEPAPEEGDEPAGASAEQTDGAEEQPETTEEQ 121 Query: 872 TEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITE 931 E V E A + + AE E E A ++P + Sbjct: 122 AEAAAERQDAEPVPPETAAEQAEHAQEAEEPAEAAAEGDEAAVERPDAEPAPQEPAAV-P 180 Query: 932 SDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVET 991 + E EP + E +E ++ V Sbjct: 181 RPQSARDEEETAQEPDHDEPEAAEAAKETIDPVRSPFGAVSAVQTTEPSHEGAAYRPAGP 240 Query: 992 VAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHAS 1051 V V A P + P +P H A Sbjct: 241 PPPVPLVPPVPTLDVPAQPETPTVPSVTFQPPMVVF--QPPQPIPKAEVPPKHAAVVEDE 298 Query: 1052 AAPARP 1057 + P Sbjct: 299 SEDIEP 304 >UniRef50_Q4JWU2 Ribonuclease E n=2 Tax=Corynebacterium jeikeium RepID=Q4JWU2_CORJK Length = 1013 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 167/692 (24%), Positives = 276/692 (39%), Gaps = 67/692 (9%) Query: 14 LRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYGAERHGFLPLKEI 73 +V +V+ +L + + H+ N+Y G++ + S+EAAFVD G R+ L E+ Sbjct: 350 TQVGVVEDGQLVEHFVADATHQSLIGNVYLGRVQNVLGSMEAAFVDIGTGRNAVLYAGEM 409 Query: 74 AREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNN 133 + + I LR G +++VQ+ K+ G+KGA LT IS AG YLV P Sbjct: 410 DW---RSPHLHSKSRKIDQALRPGDQILVQVLKDPIGHKGARLTNRISFAGRYLVYFPAG 466 Query: 134 PRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEA 193 GISR++ +R LK+ L + +G G I+RTA + E + D+ K W+ Sbjct: 467 T-TAGISRKLPAGERKRLKDILGEVITGDG-GAIIRTAAENATEEQITEDVQRLEKRWQE 524 Query: 194 IKK-----AAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALG 248 I+K P +++E N++++ RD D E++ID K + R ++ Sbjct: 525 IQKLENKERNSKGSKPVTLYEEPNMLIQVVRDVFNADFSELIIDGDKSWQAVRDYLGR-T 583 Query: 249 RPDFSSKIKLYT----GEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDI 304 P+ ++ + F+ ++ Q+E A R+V LPSGG ++ID TEA+T ID+ Sbjct: 584 SPELMDRVHKWNRGKHDGQDAFAPLDLDQQLEKAMARKVWLPSGGYLIIDHTEAMTVIDV 643 Query: 305 NSARATR-GGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRL 363 N+ GG++E T NLEAA+EI RQLRLRD+GG+IV+DFIDM ++Q V RL Sbjct: 644 NTGSFVGSGGNLEATVTENNLEAAEEIVRQLRLRDIGGMIVVDFIDMLLQQNQDLVLRRL 703 Query: 364 REAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSI 423 E + +DR R ++ ++ GL++++R+RL L E+ C C G G + + + Sbjct: 704 SEFLGRDRTRHKLGEVTSLGLVQLTRKRLGTGLLETFSTPCEACDGRGFIMHPDPVE--- 760 Query: 424 LRLIEEEALKENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPH 483 P + + H Sbjct: 761 ------------------------------------------------QKDPEPRRDHGH 772 Query: 484 YHVLRVRKGEETPTLSYMLPKLHEEAMALPSEEEFAERKRPEQPALATFAMPDVPPAPTP 543 + K + L + + S+ E + +R Q P T Sbjct: 773 RKERQQAKNQGKNQSKGQLKERGQGKAPERSQREDKQVERTPQVEQTEQTQRPQSPQGTR 832 Query: 544 AEPAAPVVAPAPKAAPATPAAPAQPGLLSRFFGALKALFSGGEETKPTEQPAPKAEAKPE 603 V P AA + QP E A + Sbjct: 833 RRVRRVVRRGTPLAAQGSERQEEQPEPKQEQSQKRGGNAKARNRASDIEGIVASARKRSA 892 Query: 604 RQQDRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVT 663 ++ +N + + + N R A+ + S + Sbjct: 893 QEDPDEPSAADNAERPEQNKVAANRVRRRRRVVRSAHTNARSARSSSGRDAHSSAANRSS 952 Query: 664 EKARTADEQQAPRRERSRRRNDDKRQAQQEAK 695 + +++PRR+R R N A + Sbjct: 953 YEEAKRKFEESPRRKRQTRGNSKSDFAPRPED 984 Score = 53.8 bits (127), Expect = 4e-05, Method: Composition-based stats. Identities = 30/212 (14%), Positives = 56/212 (26%), Gaps = 2/212 (0%) Query: 852 QDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVE 911 Q +++ V+ E P +A + A + + +EP Sbjct: 71 SASSEPSQADEKPAEVEAPAAEKPKKSAKKAAKKATKKSAKQTAKKRTKKSSEPAEHAKP 130 Query: 912 TTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEP 971 + E + V ++VA E E + + V +TA+ V + Sbjct: 131 SKSVEPAEQKEQVEQAVEDATEVAPEAVAEETTEKPEKKSAKRTAKRSVKKTAKRAVKKS 190 Query: 972 EVVAQPAAPVVAEVAAEVE--TVAAVEPEVTVEHNHATAPMTRAPAPEYVPEAPRHSDWQ 1029 +Q A + + E +P+ P R Sbjct: 191 AKKSQQAEEPEQKPEKKSERAAAQVAKPQEEKAQEEKAQEENSEQKPVRRRRVRRVVRRV 250 Query: 1030 RPTFAFEGKGAAGGHTATHHASAAPARPQPVE 1061 E + + T + AP P E Sbjct: 251 GSARRAEERASEEKADETPAKNVAPEDLHPAE 282 Score = 47.2 bits (110), Expect = 0.004, Method: Composition-based stats. Identities = 24/171 (14%), Positives = 42/171 (24%), Gaps = 2/171 (1%) Query: 883 VVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAE 942 +SA A A V+ + A + + + + Sbjct: 69 ALSASSEPSQADEKPAEVEAPAAEKPKKSAKKAAKKATKKSAKQTAKKRTKKSSEPAEHA 128 Query: 943 QAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVE 1002 + VEP E+ +E+ VE A V E P + + V+ Sbjct: 129 KPSKSVEPAEQKEQVEQAVEDATEVAPEAVAEETTEKPEKKSAKRTAKRSVKKTAKRAVK 188 Query: 1003 HNHATAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAA 1053 + + P E PE + E K + Sbjct: 189 KSAKKSQQAEEP--EQKPEKKSERAAAQVAKPQEEKAQEEKAQEENSEQKP 237 >UniRef50_C7G7S7 Ribonuclease, Rne/Rng family n=2 Tax=Roseburia RepID=C7G7S7_9FIRM Length = 418 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 112/425 (26%), Positives = 201/425 (47%), Gaps = 31/425 (7%) Query: 1 MKRMLINATQQE--ELRVALVDG--QRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAA 56 M R +I T+ E E R+A + Q+L ++ ES NIY G++ + +L AA Sbjct: 1 MNRFIITTTEIEKKEYRIAALCDARQKLIEVTTESMTGTSVLGNIYIGRVENVVKNLNAA 60 Query: 57 FVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL 116 FV ++ +LPL+E+ F S + G E++VQ+ KE K ++ Sbjct: 61 FVCIAPGQNCYLPLQELKNPIFTKKQSEKKA------ICAGDELLVQVVKEALKTKDPSV 114 Query: 117 TTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEG---MGLIVRTAGV 173 +T ++ G Y++L + G S ++ + R +L + + + G++VRT Sbjct: 115 STNLTFTGKYVILTTGKRKIGASS-KLPKEKREKLLKIVEDFLSGKEQIPYGVVVRTNAA 173 Query: 174 GKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDN 233 S E L +L+ + I A+ L+H+E + ++GE++ D+ Sbjct: 174 QASKEELLLELAQLEAEVQKIISGAKYLIRYSLVHKEEQPWQKMLNGLYETELGEVVTDD 233 Query: 234 PKVLELARQHIAALGRP----------------DFSSKIKLYTGE-IPLFSHYQIESQIE 276 ++ E + KI+ Y E + L + I SQ+ Sbjct: 234 REIFETICNMYGVGAKQLVTGGSVRSRVDEILTGHGLKIRYYEDEMVSLSALSGITSQLH 293 Query: 277 SAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRL 336 A + V L SG ++I TEALT ID+N+ + +++E N+EAA+EIARQLRL Sbjct: 294 DALRERVWLKSGAYLIIQPTEALTVIDVNTGKNIAKKEMQENFLKVNIEAAEEIARQLRL 353 Query: 337 RDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSL 396 R++ G++++DFI++ + + N A+++D QI +++ GL+E++R+++ SL Sbjct: 354 RNISGIVIVDFINLEAKSAESELLNVFGAALKKDPVPTQIVEMTKLGLVEVTRKKIKKSL 413 Query: 397 GESSH 401 ES Sbjct: 414 RESLS 418 >UniRef50_C4Z9Z5 Ribonuclease G and E n=1 Tax=Eubacterium rectale ATCC 33656 RepID=C4Z9Z5_EUBR3 Length = 402 Score = 375 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 108/415 (26%), Positives = 195/415 (46%), Gaps = 28/415 (6%) Query: 1 MKRMLINATQQEE---LRVALV-DGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAA 56 M R+++ T + AL+ + D + P + NIY ++ +I P + AA Sbjct: 1 MNRIILTKTVKNNKTYTVYALMDENGNYKDFQL-LPEKDTIINNIYAARVNKILPGINAA 59 Query: 57 FVDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAAL 116 FV + +L L + + + + K+ L EG E++VQ+ K+ K + Sbjct: 60 FVTIAQNKSCYLSLNDAKNPVYT------NKKSKKEGLCEGDEILVQVIKDALKTKDPVV 113 Query: 117 TTFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEAL---ASLELPEGMGLIVRTAGV 173 TT +S+ GS ++L N G+S +++ + L++A+ + EG G+IVRT Sbjct: 114 TTKLSIFGSNVILT-NFDTQIGVSSKLDKERAALLRKAVLLSCADHEKEGYGIIVRTNAK 172 Query: 174 GKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESN---VIVRAFRDYLRQDIGEIL 230 +A+ D + ++ I K A + ++ + ++++ D+ + I Sbjct: 173 NVEDKAVSQDAYSVAQKYDQIIKKAPHQALYSCVYHGMSDYLLLMKTI-DFAT--VEWIK 229 Query: 231 IDNPKVLELARQHIAALGRPDFSS-KIKLYTGE-IPLFSHYQIESQIESAFQREVRLPSG 288 D + + + G D + KI Y I + + Y I I++ R V L G Sbjct: 230 TDCDDIYDSL---LTEYGIYDHAPEKIMRYDDSAISMSTLYGIRGLIDNLTSRRVWLDCG 286 Query: 289 GSIVIDSTEALTAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFI 348 G+I+I+ E LT ID+NSA+ G + TN+EAA EIARQLRLR++ G+I+IDFI Sbjct: 287 GNIIIEQLETLTFIDVNSAKNISSGS--NSILKTNMEAAKEIARQLRLRNISGMIIIDFI 344 Query: 349 DMTPVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESSHHV 403 +M + + L+ ++ D I++ GL+E++R+++ SL + Sbjct: 345 NMKSEASKDTLIEELKRYIKDDNTVCTFVDITKLGLVELTRKKVHKSLKQILEKT 399 >UniRef50_B4U851 RNA binding S1 domain protein n=1 Tax=Hydrogenobaculum sp. Y04AAS1 RepID=B4U851_HYDS0 Length = 384 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 111/400 (27%), Positives = 196/400 (49%), Gaps = 28/400 (7%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 MK L+ + + + L L D+ +++ + ++I+ GKI I +E FVD Sbjct: 1 MK--LVVYKKNDVIFSMLFKSNELLDIKVDNLNDPEYSSSIFLGKIKSIANGVEGYFVDI 58 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G ++ G+LP KE +EY + G V+VQ+ KE KGA LTT + Sbjct: 59 GLKKDGYLPFKEADKEY-----------------KIGDYVVVQVKKEPSKFKGAKLTTKL 101 Query: 121 SLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEAL 180 S G Y++ ++ S + + +++ + + L E +I+RT + Sbjct: 102 SFKGKYIIYY-EADKSVKTSHLFDENFKSDYIDKVYRLLR-EKESVIIRTQAKNVDISRI 159 Query: 181 QWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELA 240 +L F K + I+ S A + + V +DY+ I +I++ + KV Sbjct: 160 GQELEFYRKKAKLIRDI--SHKAIMQLEPKEPCYVSMIKDYVG-GIEKIVVSDIKVYNNI 216 Query: 241 RQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALT 300 I D + +++ + L + Y++E I + V L SGG +VI+ TEA+T Sbjct: 217 VGFI---LSNDLNINVEMIIDKESLENLYEVEKHINRLLSKYVWLESGGFLVIEETEAMT 273 Query: 301 AIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVE 360 ID+NS + T IE ++++TNLEAA EI RQ++LR++GG+I+IDFI M H++ V Sbjct: 274 TIDVNSGKNTCDC-IESSSYSTNLEAAKEIPRQIKLRNIGGIIMIDFIFMKDQVHRKEVL 332 Query: 361 NRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESS 400 + L+ +D + + + GL+E++R++ SL ++ Sbjct: 333 DVLKNGFSKDNVQTTVYGYTALGLMEIARKKTGRSLFQTI 372 >UniRef50_C4FYU8 Putative uncharacterized protein n=1 Tax=Abiotrophia defectiva ATCC 49176 RepID=C4FYU8_ABIDE Length = 406 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 114/409 (27%), Positives = 189/409 (46%), Gaps = 20/409 (4%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQK---KANIYKGKITRIEPSLEAAF 57 M R +I+ + L AL D + + I + +I G++ I ++ A F Sbjct: 1 MIR-IISTKIKGRLVSALTDDFDIKEFKISESTDGEVSFNIGDIVVGRVENIVKNINACF 59 Query: 58 VDYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALT 117 V+ +LPL + + N G P I D+ ++VQI K K +LT Sbjct: 60 VEIFPGIQAYLPLTPDMKIIY-VNGKPGGTPVIDDL------ILVQIAKLPTKTKSYSLT 112 Query: 118 TFISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEAL----ASLELPEGMGLIVRTAGV 173 T + G Y VL PN + S+ E D TE+K G G ++R + + Sbjct: 113 TDFTFIGKYAVLKPNLDKIHLSSKYREEADFTEIKSRFMSVGEKFATETGAGGVIRKSAL 172 Query: 174 GKSAEALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDN 233 S + L+ L + +I + I +E + RD + I +I+ D+ Sbjct: 173 NLSDKELEDTLYDLYVKFVSIINRGKHGVKYERIFKEIPEHLSLIRDNC-EKIEKIMTDD 231 Query: 234 PKVLELARQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIV 292 + ++++ D K+ Y E+ L + Y I + +E A + V L SG IV Sbjct: 232 EETYNEYKEYLKEFSEKDI-KKLFFYKDEMMSLSALYSINTTLEKALSKRVWLKSGAYIV 290 Query: 293 IDSTEALTAIDINSARA-TRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMT 351 I+ TEALT ID+NS +A T ET NLEAA EIA QLRLR+L G+I++DFI++ Sbjct: 291 IEYTEALTIIDVNSGKAITGKSTNTETFMKINLEAAREIADQLRLRNLSGIIIVDFIEIP 350 Query: 352 PVRHQRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESS 400 R + + N + + +++D + ++ I++ GL+E++R+R + E Sbjct: 351 KSRG-KELINAMEDFLKEDSTKSNVADITKLGLMELTRRRTGKPIYEIL 398 >UniRef50_A9ESZ7 Ribonuclease G n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9ESZ7_SORC5 Length = 907 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 149/415 (35%), Positives = 235/415 (56%), Gaps = 8/415 (1%) Query: 77 YFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRA 136 + I++V+REGQEVIVQ+ KE G KGA +T+ ISL G Y+V +P Sbjct: 495 WQNEPPRISKSTPIREVVREGQEVIVQVSKEPIGTKGARVTSHISLPGRYVVYLPTVDHI 554 Query: 137 GGISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIK 195 GIS+RI +R+ L++A+ +++ P+G GLIVRT G + + L+ D+ + ++ W + Sbjct: 555 -GISKRIGSEKERSRLRDAIEAMKPPQG-GLIVRTLAEGLTKKQLKADVGYLVRLWGEVA 612 Query: 196 KAAESR-PAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSS 254 K ES AP +++ E +++++ RD DI +I+ID+ + R+ + P+ + Sbjct: 613 KKRESGVRAPAVLYTELDLVLKTARDLFTDDIEKIVIDDREEYIRLRRFVEMF-MPERAD 671 Query: 255 KIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRG-- 312 ++LY G P+F Y IE +I+ A R+V LPSGG ++ID EALTAID+N+ R Sbjct: 672 AVELYEGTEPIFDAYGIEDEIQRALSRKVPLPSGGHLIIDQAEALTAIDVNTGRFVGKGS 731 Query: 313 GDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRA 372 D+EET TNLEA +EIA QLR R++GGLI++D IDM +++ V RL E + +D+A Sbjct: 732 KDLEETILTTNLEAVEEIAYQLRFRNIGGLIILDLIDMERAQNREKVRRRLEELLSRDKA 791 Query: 373 RIQISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEAL 432 + ++ IS GL+EM+R+R SLG + C C GTG ++ ++++ ILR I E + Sbjct: 792 KTTLNRISDLGLIEMTRKRTRESLGRTILEPCFYCDGTGQLQSKQTVAYEILRQIRRERM 851 Query: 433 KENTQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVL 487 V + L N++R AV R R +VP + + + Sbjct: 852 NLPGYSVVVNAHPAVIDLLKNDERIAVQE-AERLFQRRIDLVPRKEYHLEQFDLQ 905 Score = 77.3 bits (188), Expect = 3e-12, Method: Composition-based stats. Identities = 29/91 (31%), Positives = 50/91 (54%) Query: 2 KRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDYG 61 K +L+ E RVAL++ + +L +E + NIY GK++R+ P ++AAF+D G Sbjct: 3 KNLLVINVDIRETRVALIENGIIAELHLERESSKGTLGNIYLGKVSRVLPGMQAAFIDVG 62 Query: 62 AERHGFLPLKEIAREYFPANYSAHGRPNIKD 92 ER FL ++++ R Y A R +++ Sbjct: 63 LERAAFLHVEDLIRPDDFEAYLAGHRRTVEE 93 >UniRef50_A7B8M6 Putative uncharacterized protein n=4 Tax=Clostridiales RepID=A7B8M6_RUMGN Length = 413 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 101/403 (25%), Positives = 187/403 (46%), Gaps = 17/403 (4%) Query: 3 RMLINATQQEELRVALVDGQRLYDLDIESPG----HEQKKANIYKGKITRIEPSLEAAFV 58 R ++ ++ ++ L++ + ++ P + +IY GK+ I ++ AAF+ Sbjct: 4 RKILMLKKEGKIWTFLLENDVIAEIHCSLPDSDQHRQPVLGDIYIGKVKNIAANIGAAFI 63 Query: 59 DYGAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTT 118 + + + L + + F K L G E++VQI +E K +++ Sbjct: 64 EIAPGKECYYDLSQAPQAIFTHKIG-------KKPLCIGDELVVQISREAVKTKAPTVSS 116 Query: 119 FISLAGSYLVLMPNNPRAGGISRRIEGDDRTELKEALASLELPEGMGLIVRTAGVGKSAE 178 I+ G Y VL N R G S ++ R KE L+ L E GLI+RT E Sbjct: 117 NINFTGRYAVLTTGNTRI-GTSGKLPRSLRDTYKEKLSHL-KNEDYGLIIRTNAKDVPFE 174 Query: 179 ALQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLE 238 + ++ +K+ A R + + + ++ + I+ D+PK+ + Sbjct: 175 TVLEEIQKLENACVKLKETAPFRTCFSCLQEAPPSYITDLKNVYADGLSAIITDDPKLYQ 234 Query: 239 LARQHIAALGRPDFSSKIKLYTGEI-PLFSHYQIESQIESAFQREVRLPSGGSIVIDSTE 297 + A +P+ SK++ Y ++ PL Y + +E A + V L +G +VI TE Sbjct: 235 QIHGFLQA-EQPEDLSKLQFYEEQLLPLSKLYSTDIAVERALKEYVWLKNGAYLVIQPTE 293 Query: 298 ALTAIDINSARATRGGDIE--ETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRH 355 ALT +D+NS + + + ET NLEAA E ARQ+RLR++ G+I+IDFI+M Sbjct: 294 ALTVVDVNSGKYSAKTKKKSAETYLKINLEAAKETARQIRLRNISGIILIDFINMDDPDM 353 Query: 356 QRAVENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGE 398 + + + R + +D + + ++ L+E++R+++ L E Sbjct: 354 MQELLKQFRRFLGEDPIQTSVVDVTALQLVEVTRKKVRRPLHE 396 >UniRef50_Q01YX3 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus Solibacter usitatus Ellin6076 RepID=Q01YX3_SOLUE Length = 913 Score = 368 bits (943), Expect = e-100, Method: Composition-based stats. Identities = 146/410 (35%), Positives = 223/410 (54%), Gaps = 6/410 (1%) Query: 78 FPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAG 137 A P+I D+L+EGQE+IVQI KE G KGA +T+ I+L G +LV MP Sbjct: 506 PDARSDRPPLPSISDLLKEGQEIIVQIAKEPLGQKGARITSHIALPGRFLVYMPTVDHI- 564 Query: 138 GISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKK 196 G+SR+I D+R LK L + G IVRTAG G++ E L+ D+ F W +++ Sbjct: 565 GVSRKIPSDDERLRLKRILQTNRTGIPGGYIVRTAGDGRTEEELRADMMFLYNLWLDMRQ 624 Query: 197 AAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKI 256 AE R AP LIH + NV+ R RD L + +DN +V E + + P +++ Sbjct: 625 KAERRAAPLLIHHDLNVVERILRDQLTSSYKSVWVDNEEVYESVLRFVQRFQ-PALVNRV 683 Query: 257 KLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGD-I 315 K+YT P+F + I +++E A + +V L SGG IVI+ TEAL AIDIN+ + + + Sbjct: 684 KMYTRSTPIFDEFGITAELEKALRPKVWLKSGGYIVINQTEALVAIDINTGKYVGKSNRL 743 Query: 316 EETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQ 375 E+T TN +A EI RQ+RLRDLGG+IV+DFIDM ++++ V L EA+R DRA + Sbjct: 744 EDTIVKTNTDAIKEIVRQIRLRDLGGIIVVDFIDMDERKNRQKVMQALEEAMRADRAPYK 803 Query: 376 ISHISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKEN 435 I + FGL+ ++R+R+ SL + CP C G G V+ +++ IL+ + A + Sbjct: 804 ILQFNDFGLVAITRKRVKQSLERTLCTPCPYCEGAGYVKSPQTVVGEILQEAHKIARAVD 863 Query: 436 TQEVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYH 485 V V +A L + + + + G ++ + + + Sbjct: 864 -GNVMLRVAPEVAKLLKSNQNTFLQE-VEEILGRPVIVKSDPLLHQEKFD 911 Score = 78.0 bits (190), Expect = 2e-12, Method: Composition-based stats. Identities = 21/76 (27%), Positives = 43/76 (56%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + LI + + E RVA+++ ++ ++ + +I+KG++TR+ P +++AFVD Sbjct: 1 MSKELIISATRHETRVAVIEEDQVVEIYHQRENEYSLAGSIHKGRVTRVLPGMQSAFVDI 60 Query: 61 GAERHGFLPLKEIARE 76 G R FL + + + Sbjct: 61 GLGRDAFLYVSDFFED 76 Score = 51.1 bits (120), Expect = 2e-04, Method: Composition-based stats. Identities = 54/463 (11%), Positives = 94/463 (20%), Gaps = 16/463 (3%) Query: 607 DRRKPRQNNRRDRNERRDTRSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKA 666 + E+ + + S A A Sbjct: 75 EDNDEYDKIVSSVEEKVLKLDRVPAAQPAPAAQEGTPEEVAGTPSAAPVSEAAAVPQNVA 134 Query: 667 RTADEQQAPRRERSRRRNDDKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLN 726 A + R D+ + + + + ++ R + R + Sbjct: 135 PLGPPASAMQVPPGMERRSDRSGDRGGDRGGDRGGDRGGDRDRRGGRRSRRGRGNRGGGG 194 Query: 727 QKVRYEQSVAEEAVVAPVVEETVAAEPIVQEAPAPRTE--------------LVKVPLPV 772 + E V E A P+ E P+ + Sbjct: 195 RGSLPESKFYSPRQEGEVHEPAPAPTPVAAEEPSASEPRVVFDMEQDDFFVLPGESLAKY 254 Query: 773 VAQTAPEQQEENNADNRDNGGMPRRSRRSP-RHLRVSGQRRRRYRDERYPTQSPMPLTVA 831 E +E +NA + P + H V R + P A Sbjct: 255 KGGPEDEAEESSNAGAAEETEQPAATAEPDLVHEAVIEARVEAVEVAAEVVAATEPEVEA 314 Query: 832 CASPELASGKVWIRYPIVRPQDVQVEEQREQEEVHVQPMVTEVPVAAAIEPVVSAPVVEE 891 + + P V P V + ++ + + A E V + E Sbjct: 315 APAKAAEPESARVAEPAVGPPVQVVSFETGFTSIYTEEAPADFEAVEAAEAGVESEAESE 374 Query: 892 VAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQPQVITESDVAVAQEVAEQAEPVVEPQ 951 + Q + A E P E+ E + Sbjct: 375 AESEAGSEAQAEAGMELEGDAEGELEADAEGGE-PHAEGEAGAETVVEDEGPEPARIPTS 433 Query: 952 EETADIEEVVETAEVVVAEPEVVAQPAAPVVAEVAAEVETVAAVEPEVTVEHNHATAPMT 1011 E+ V + E + EP Sbjct: 434 LTATLREQGSRYPHRVSRRTRRKGRGERGPDRGPLPEGQRPPQGEPRPQEGRPEQRTSPR 493 Query: 1012 RAPAPEYVPEAPRHSDWQRPTFAFEGKGAAGGHTATHHASAAP 1054 PE PEA + RP G + P Sbjct: 494 PEGRPESRPEARPDARSDRPPLPSISDLLKEGQEIIVQIAKEP 536 >UniRef50_Q1IRN1 Ribonuclease, Rne/Rng family n=1 Tax=Candidatus Koribacter versatilis Ellin345 RepID=Q1IRN1_ACIBL Length = 1031 Score = 364 bits (933), Expect = 1e-98, Method: Composition-based stats. Identities = 138/410 (33%), Positives = 213/410 (51%), Gaps = 5/410 (1%) Query: 80 ANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFISLAGSYLVLMPNNPRAGGI 139 N + P I D+L+EGQE++VQI KE G KGA +T+ I+L G +LV MP G+ Sbjct: 625 KNMQSRNTPLISDLLKEGQEILVQIAKEPIGKKGARITSHIALPGRFLVYMPTVNHV-GV 683 Query: 140 SRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEALQWDLSFRLKHWEAIKKAA 198 SR+I ++R LK ++S G IVRTA + L+ D+ F W IK + Sbjct: 684 SRKIASDEERQRLKRIVSSERENGHGGFIVRTAAANVKEDELRADIRFLKHLWSEIKGRS 743 Query: 199 ESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLELARQHIAALGRPDFSSKIKL 258 + +P LI+ + N++ R RD + D I +DN E + + P +IKL Sbjct: 744 DKSKSPALIYHDLNLVERVLRDQVTSDFTTIWVDNESEYERVLRFASRFQ-PSLVRRIKL 802 Query: 259 YTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEALTAIDINSARATRGGD-IEE 317 YT PLF + I+ +I A + +V L SGG IVI+ TEAL AIDIN+ + +E+ Sbjct: 803 YTKNTPLFEEFGIQEEINKALKAKVWLKSGGYIVINQTEALVAIDINTGKYVGKTTRLED 862 Query: 318 TAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAVENRLREAVRQDRARIQIS 377 T TN++A EI RQ+RLRDLGG+IVIDFIDM ++++ V L EA++ DRA ++ Sbjct: 863 TIVKTNVDAIKEIVRQIRLRDLGGIIVIDFIDMDERKNRQKVMAALEEALKSDRAPSKVL 922 Query: 378 HISRFGLLEMSRQRLSPSLGESSHHVCPRCSGTGTVRDNESLSLSILRLIEEEALKENTQ 437 + FGL+ ++R+R+ SL + C C TG V+ ++ I + + A + + Sbjct: 923 QFNDFGLVAITRKRVKQSLERTLGTPCSYCEATGFVKSVPTMCSEIYTEVRKLAKHLDGK 982 Query: 438 EVHAIVPVPIASYLLNEKRSAVNAIETRQDGVRCVIVPNDQMETPHYHVL 487 +V V +A + + G ++ + M H+ + Sbjct: 983 DVTIRVNPEVAKAIKENNGK-LVQEFEELTGKTVIVKSDPAMHQEHFDIH 1031 Score = 77.7 bits (189), Expect = 2e-12, Method: Composition-based stats. Identities = 26/72 (36%), Positives = 42/72 (58%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M + L ++ E RVALV+ +L ++ E +IYKG++TR+ P +++AFVD Sbjct: 1 MNKELYVSSNPHETRVALVEDDQLAEIFYERENEYTLAGSIYKGRVTRVLPGMQSAFVDV 60 Query: 61 GAERHGFLPLKE 72 G ER FL + + Sbjct: 61 GLERDAFLYVSD 72 Score = 49.1 bits (115), Expect = 9e-04, Method: Composition-based stats. Identities = 55/440 (12%), Positives = 101/440 (22%), Gaps = 4/440 (0%) Query: 626 RSERTEGSDNREENRRNRRQAQQQTAETRESRQQAEVTEKARTADEQQAPRRERSRRRND 685 + E E + + +++ R++R++ + R A E + R R R + Sbjct: 77 QDEEDEDFEVAVKTNGTADNTREERPARRDNRREERHGREERQAREDRPSRENRREPRRN 136 Query: 686 DKRQAQQEAKALNVEEQSVQETEQEERVRPVQPRRKQRQLNQKVRYEQSVAEEAVVAPVV 745 + + +E EE + E E Sbjct: 137 REERQPPGEPQQPTAIFEGGYSEAEEETEEASVETAGTEEGNSTAEENGDGEGTSRWRGR 196 Query: 746 EETVAAEPIVQEAPAPRTELVKVPLPVVAQTAPEQQEENNADNRDNGGMPRRSRRSPRHL 805 RTE + A + ++EE + + +P Sbjct: 197 RRRRGGRRGRNGERFERTETQQQAASASAAESEVEEEEQPEVHEEAAPVPEAEVEEQPRR 256 Query: 806 RVSGQRRRRYRDERYPTQSPMPLTVACASPELASGKVWIRYPIVRPQDVQVEEQREQEEV 865 Q RR + + G + P +P + E + Sbjct: 257 EREDQGRRDRAERGTRRGRDRGGRDRDRGDRESGGGDFGPPPGYQPIVMPGESLSKYRNR 316 Query: 866 HVQPMVTEVPVAAAIEPVVSAPVVEEVAGVVEAPVQVAEPQPEVVETTHPEVIAAAVTEQ 925 A PV E + E P V + Sbjct: 317 PAAAETHVEHPAHEQTLETHEPVQHEEHESNTQEEAASIVAAAFEEHAVPAVTHEEAVSE 376 Query: 926 PQVIT--ESDVAVAQEVAEQAEPVVEPQEETADIEEVVETAEVVVAEPEVVAQPAAPVVA 983 P E+ +E E + P++ + A E E + Sbjct: 377 PHTEEVSEAAQQHDEEPTEGFAELRAPRQVAEMRVDPEAEAYRKDVEDEFEEEEQVEEAE 436 Query: 984 EVAAEVETVAAVEPEVTVEHNHA--TAPMTRAPAPEYVPEAPRHSDWQRPTFAFEGKGAA 1041 E A P V + ++ + P E + A Sbjct: 437 RAEQESAAEALSAPAAEVAQDEEALSSELEAQPVAEDDDVTYHRVTEYEAPPRILPETAP 496 Query: 1042 GGHTATHHASAAPARPQPVE 1061 G T H + V+ Sbjct: 497 VGKTLEHETFDGEESGESVQ 516 >UniRef50_B6INE9 Ribonuclease, Rne n=1 Tax=Rhodospirillum centenum SW RepID=B6INE9_RHOCS Length = 392 Score = 363 bits (932), Expect = 2e-98, Method: Composition-based stats. Identities = 119/401 (29%), Positives = 184/401 (45%), Gaps = 14/401 (3%) Query: 1 MKRMLINATQQEELRVALVDGQRLYDLDIESPGHEQKKANIYKGKITRIEPSLEAAFVDY 60 M R L R AL+ L DL ++ ++ G++ R+ L+AAFV+ Sbjct: 1 MSRALHIDRSGPLSRAALLRDGELSDLHLDRLDRPAWLGSLRLGRVVRVVAGLDAAFVEI 60 Query: 61 GAERHGFLPLKEIAREYFPANYSAHGRPNIKDVLREGQEVIVQIDKEERGNKGAALTTFI 120 G G L ++ + I +LR GQ V+VQ+ + G+KGA LT + Sbjct: 61 GDRLPGLLNAADVRPL---PSGRDRREARIGQLLRTGQAVLVQVKADAHGDKGAVLTMDV 117 Query: 121 SLAGSYLVLMPNNPRAGGISRRI-EGDDRTELKEALASLELPEGMGLIVRTAGVGKSAEA 179 +L G +LV P +SRR+ G +R ++ L L LP G IVR Sbjct: 118 TLPGRFLVHAPLGS-GLHLSRRLGRGPERARVQATLRDL-LPAEGGWIVRADAASADPGL 175 Query: 180 LQWDLSFRLKHWEAIKKAAESRPAPFLIHQESNVIVRAFRDYLRQDIGEILIDNPKVLEL 239 L + W +AA+ AP L+ VRA ++ I ++ + L Sbjct: 176 LALEAESLWADWRQAARAADGAGAPALLLPAPTAPVRALLEFGGAGFDAIRVEGAEALAE 235 Query: 240 ARQHIAALGRPDFSSKIKLYTGEIPLFSHYQIESQIESAFQREVRLPSGGSIVIDSTEAL 299 R+ PD ++ + + LF + I + +R V L GGS+VI+ TEAL Sbjct: 236 VRRWCRDRA-PDLEPLVRPHVARLSLFEEGDLAGAIAALAERRVPLAQGGSLVIERTEAL 294 Query: 300 TAIDINSARATRGGDIEETAFNTNLEAADEIARQLRLRDLGGLIVIDFIDMTPVRHQRAV 359 T ID+N +TNLEAA EIARQLRLR++GG++V+DF++M + + Sbjct: 295 TVIDVNGGERGNP-------LSTNLEAAREIARQLRLRNVGGIVVVDFVNMAAAADREHL 347 Query: 360 ENRLREAVRQDRARIQISHISRFGLLEMSRQRLSPSLGESS 400 L +AV +D A + +S+ GL+EM+R R P + + Sbjct: 348 LLTLTQAVSEDPAGTHVYGLSKLGLMEMTRSRRGPPVADLL 388 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.297 0.113 0.262 Lambda K H 0.267 0.0350 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 4,636,112,108 Number of Sequences: 3077464 Number of extensions: 209766281 Number of successful extensions: 2136921 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 24474 Number of HSP's successfully gapped in prelim test: 32167 Number of HSP's that attempted gapping in prelim test: 1505622 Number of HSP's gapped (non-prelim): 341853 length of query: 1061 length of database: 1,040,396,356 effective HSP length: 139 effective length of query: 922 effective length of database: 612,628,860 effective search space: 564843808920 effective search space used: 564843808920 T: 11 A: 40 X1: 16 ( 6.8 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.1 bits) S2: 98 (42.6 bits)