BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (467 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P04995 Exodeoxyribonuclease I n=282 Tax=Bacteria RepID=... 972 0.0 UniRef50_B0BNV2 Exonuclease I n=17 Tax=Gammaproteobacteria RepID... 557 e-157 UniRef50_C6XFI1 Exonuclease I n=1 Tax=Candidatus Liberibacter as... 514 e-144 UniRef50_Q483M2 Exodeoxyribonuclease I n=21 Tax=Gammaproteobacte... 502 e-140 UniRef50_Q8K923 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidico... 452 e-125 UniRef50_Q1QT40 Exodeoxyribonuclease I subunit C n=10 Tax=Proteo... 445 e-123 UniRef50_C1DSN1 Exodeoxyribonuclease I n=1 Tax=Azotobacter vinel... 433 e-120 UniRef50_P57620 Exodeoxyribonuclease I n=2 Tax=Buchnera aphidico... 429 e-118 UniRef50_B3PLL7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacter... 427 e-118 UniRef50_A3WL65 Exonuclease I n=2 Tax=Idiomarina RepID=A3WL65_9GAMM 419 e-115 UniRef50_UPI0001911F1B exonuclease I n=1 Tax=Salmonella enterica... 416 e-114 UniRef50_Q4K7B4 Exodeoxyribonuclease I n=25 Tax=Pseudomonas RepI... 416 e-114 UniRef50_Q21I25 Exodeoxyribonuclease I subunit C n=2 Tax=Gammapr... 412 e-113 UniRef50_A4ADV7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacter... 412 e-113 UniRef50_A6VXX3 Exodeoxyribonuclease I n=4 Tax=Oceanospirillales... 407 e-112 UniRef50_Q0AEW3 Exodeoxyribonuclease I subunit C n=2 Tax=Nitroso... 407 e-112 UniRef50_Q89A43 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidico... 405 e-111 UniRef50_A0Z9I3 Exonuclease n=1 Tax=marine gamma proteobacterium... 396 e-109 UniRef50_Q21WQ6 Exodeoxyribonuclease I subunit C n=24 Tax=cellul... 390 e-107 UniRef50_D2UDX2 Putative exodeoxyribonucleaseIprotein n=1 Tax=Xa... 386 e-106 UniRef50_B8KPJ8 Exodeoxyribonuclease I n=1 Tax=gamma proteobacte... 384 e-105 UniRef50_Q605A2 Exodeoxyribonuclease I n=1 Tax=Methylococcus cap... 384 e-105 UniRef50_Q2P315 Exodeoxyribonuclease I n=17 Tax=Xanthomonadaceae... 384 e-105 UniRef50_A2R5F8 Remark: it is assumed (Fragment) n=1 Tax=Aspergi... 381 e-104 UniRef50_Q7VQX2 Exodeoxyribonuclease I n=2 Tax=Candidatus Blochm... 362 2e-98 UniRef50_B4SPA5 Exodeoxyribonuclease I n=3 Tax=Stenotrophomonas ... 355 2e-96 UniRef50_A4BJV3 Putative exodeoxyribonuclease i protein n=1 Tax=... 346 1e-93 UniRef50_C0B120 Putative uncharacterized protein n=2 Tax=Enterob... 340 8e-92 UniRef50_Q056Y2 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidico... 318 3e-85 UniRef50_UPI0000E0E98F exodeoxyribonuclease I n=1 Tax=Rhodobacte... 317 5e-85 UniRef50_B8KX06 Exonuclease I n=1 Tax=gamma proteobacterium NOR5... 308 2e-82 UniRef50_A5CVQ8 Exodeoxyribonuclease I n=4 Tax=Gammaproteobacter... 306 1e-81 UniRef50_A5KSP8 Exodeoxyribonuclease I n=2 Tax=candidate divisio... 302 2e-80 UniRef50_D0KZN4 Exodeoxyribonuclease I n=1 Tax=Halothiobacillus ... 287 5e-76 UniRef50_C0QKN8 SbcB n=1 Tax=Desulfobacterium autotrophicum HRM2... 156 1e-36 UniRef50_B5K7E4 Exodeoxyribonuclease I n=3 Tax=Rhodobacteraceae ... 150 1e-34 UniRef50_B9NSM4 Exodeoxyribonuclease I n=1 Tax=Rhodobacteraceae ... 148 4e-34 UniRef50_A3XEM3 Exonuclease I n=3 Tax=Rhodobacteraceae RepID=A3X... 133 2e-29 UniRef50_B6J811 Exodeoxyribonuclease I n=7 Tax=Gammaproteobacter... 130 1e-28 UniRef50_A4IYM7 Exonuclease n=19 Tax=Francisella RepID=A4IYM7_FRATW 125 3e-27 UniRef50_D0RRC0 Exodeoxyribonuclease I n=1 Tax=alpha proteobacte... 120 8e-26 UniRef50_Q07NS2 Exodeoxyribonuclease I subunit C n=5 Tax=Alphapr... 120 1e-25 UniRef50_C5B4J5 Putative Exodeoxyribonuclease I n=1 Tax=Methylob... 96 3e-18 UniRef50_B4WCZ9 Exonuclease family n=1 Tax=Brevundimonas sp. BAL... 93 2e-17 UniRef50_B8K5Y6 Exonuclease I n=1 Tax=Vibrio parahaemolyticus 16... 88 7e-16 UniRef50_A1ZTJ0 Exodeoxyribonuclease I, putative n=1 Tax=Microsc... 86 2e-15 UniRef50_A4GJC0 Exodeoxyribonuclease I n=1 Tax=uncultured marine... 81 1e-13 UniRef50_B6BR92 Exodeoxyribonuclease I n=1 Tax=Candidatus Pelagi... 79 3e-13 UniRef50_Q4FND4 Exodeoxyribonuclease I n=2 Tax=Candidatus Pelagi... 79 5e-13 UniRef50_UPI000169825E exonuclease I n=1 Tax=Endoriftia persepho... 77 2e-12 UniRef50_UPI0001698261 Exodeoxyribonuclease I n=1 Tax=Endoriftia... 67 2e-09 UniRef50_UPI000169825F exonuclease I n=1 Tax=Endoriftia persepho... 54 1e-05 UniRef50_UPI0001698260 exonuclease I n=1 Tax=Endoriftia persepho... 52 5e-05 UniRef50_A4V7F6 Putative exodeoxyribonuclease n=1 Tax=Pseudomona... 51 7e-05 UniRef50_UPI0001743E3B exonuclease I n=1 Tax=candidate division ... 47 0.001 UniRef50_UPI00017434A8 hypothetical protein cdivTM_22527 n=1 Tax... 47 0.002 UniRef50_A5I1F6 Helicase, UvrD/REP/exonuclease family protein n=... 46 0.003 UniRef50_A2SRZ3 Exonuclease, RNase T and DNA polymerase III n=1 ... 46 0.004 UniRef50_B4S7Q3 Exonuclease RNase T and DNA polymerase III n=1 T... 44 0.009 >UniRef50_P04995 Exodeoxyribonuclease I n=282 Tax=Bacteria RepID=EX1_ECOLI Length = 475 Score = 972 bits (2512), Expect = 0.0, Method: Compositional matrix adjust. Identities = 467/467 (100%), Positives = 467/467 (100%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 >UniRef50_B0BNV2 Exonuclease I n=17 Tax=Gammaproteobacteria RepID=B0BNV2_ACTPJ Length = 514 Score = 557 bits (1435), Expect = e-157, Method: Compositional matrix adjust. Identities = 262/460 (56%), Positives = 344/460 (74%), Gaps = 3/460 (0%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 TF F+DYE+FG PALDRPAQFA IRTDS+FN+IGEP +FYCK DYLP P AV++TGI Sbjct: 6 TFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAVMVTGI 65 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 TPQ+ A+G E FAARIH+ F+ P TCILGYNN+R+DDE+TR F+RNF+DPY +SW+ Sbjct: 66 TPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPYEYSWK 125 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 + NSRWDLLD++RACYALRP+GI W +++G+P+F+LE+LTKANGI H NAHDAMADVYA Sbjct: 126 NGNSRWDLLDLVRACYALRPDGIEWVIDENGMPNFKLENLTKANGIAHENAHDAMADVYA 185 Query: 190 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 249 TIAMAKL+K +QP+LF + F +R K ++ +ID +M PLVHVSGMFG R NT+W+AP+ Sbjct: 186 TIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTAWIAPI 245 Query: 250 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAA-VPVKLVHINKCPV 308 AWHP N+N V+ DL+GD+S LL ++ LR RLYT K +L + A VP+K VHIN+CP+ Sbjct: 246 AWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHINRCPI 305 Query: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQ-VREKVVAIFAEAEPFTPSDNVDAQL 367 +A A L PE+A RLGI+R+ CL+NLK+L+ N VREKV IF E F PS NV+ L Sbjct: 306 IAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSANVETTL 365 Query: 368 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 427 Y+GFFS AD+ M I+ P+ L + F D+R+E LLF+YRAR++P TL AEQ +W Sbjct: 366 YDGFFSPADKNNMAILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRAEQIKW 425 Query: 428 LEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 ++ Q + +Q +A+ + +L Q + D+ EKV LL+ L Sbjct: 426 QKYCHQQIDAKSVQ-FAEAIDILFQIHHDNPEKVKLLENL 464 >UniRef50_C6XFI1 Exonuclease I n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFI1_LIBAP Length = 471 Score = 514 bits (1325), Expect = e-144, Method: Compositional matrix adjust. Identities = 243/458 (53%), Positives = 324/458 (70%), Gaps = 3/458 (0%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT Sbjct: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW + Sbjct: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Query: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190 NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT Sbjct: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 Query: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250 +A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A Sbjct: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 Query: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310 WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L Sbjct: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 Query: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD-NVDAQLYN 369 + + E +R GI+ + CL+NL +LR+ +R++ AI+ +P+T S +VD+QLY+ Sbjct: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIY--NKPYTSSSQDVDSQLYD 362 Query: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429 GFF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLE Sbjct: 363 GFFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLE 422 Query: 430 HRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 HR+++ T ++ Y ++LQ L +Y D+ K L+ AL Sbjct: 423 HRKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINAL 460 >UniRef50_Q483M2 Exodeoxyribonuclease I n=21 Tax=Gammaproteobacteria RepID=Q483M2_COLP3 Length = 487 Score = 502 bits (1292), Expect = e-140, Method: Compositional matrix adjust. Identities = 248/476 (52%), Positives = 337/476 (70%), Gaps = 14/476 (2%) Query: 4 DGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 63 + +Q + L+HDYET+G +P D+P+QFA IRTD + N+IGEPE+FYC P DYLP P A Sbjct: 8 NNTEQPSILWHDYETWGINPKFDKPSQFAGIRTDLDLNIIGEPEMFYCTPPVDYLPHPEA 67 Query: 64 VLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 L+TGITPQ+A+ +G +EA FAARIH+LFT P TC+ GYN++RFDDEVTR + YRNFYDP Sbjct: 68 CLVTGITPQKAQREGLSEAEFAARIHTLFTQPNTCVAGYNSIRFDDEVTRYLLYRNFYDP 127 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWP---ENDDGLPSFRLEHLTKANGIEHSNA 180 YA WQ+ NSRWD++D++RACYALRPEGINWP + + + SFRLE LT AN I H A Sbjct: 128 YAREWQNGNSRWDIIDMVRACYALRPEGINWPTVKRDGEEVISFRLELLTAANDISHEAA 187 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 HDAM+DVYATIAMAKL+K +QP+L+D++F +NK+++ LI+ +M P+VH S + Sbjct: 188 HDAMSDVYATIAMAKLIKEKQPKLYDFIFNLKNKNQVKDLINTAEMTPIVHTSSKVSSAH 247 Query: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLG-DNAAVPVK 299 G TSW AP+++HP N+NAVI VDLA DISPLL L S+ ++ RLYT DL D +PVK Sbjct: 248 GCTSWFAPVSYHPVNKNAVICVDLARDISPLLTLSSEEIKARLYTRYDDLAPDELPIPVK 307 Query: 300 LVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTP 359 L+H+NKCPV+A A TL PE+A+RL I R CLDNL +LR++ ++R+K+ +FA ++ Sbjct: 308 LIHVNKCPVIAPAKTLLPENAERLAIPRDVCLDNLALLRKHAELRDKLSDVFATSD--FD 365 Query: 360 SDNVDAQ--LYNG-FFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFP 416 +D+VDA+ LY G FFS +D+A M I+ P L F D+R+ LLF YRARN+P Sbjct: 366 NDDVDAEQALYGGSFFSHSDKAQMDILRGLSPEQLANHPFQFQDERLSVLLFRYRARNYP 425 Query: 417 GTLDYAEQQRWLEHRRQVFTPE-----FLQGYADELQMLVQQYADDKEKVALLKAL 467 TL EQQ+W ++ + L + +++ L ++ DK K+++LKAL Sbjct: 426 YTLSTEEQQKWQQYCQNKLQYGGKGILSLDEFMMKIENLAHEHETDKAKMSVLKAL 481 >UniRef50_Q8K923 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidicola (Schizaphis graminum) RepID=EX1_BUCAP Length = 482 Score = 452 bits (1162), Expect = e-125, Method: Compositional matrix adjust. Identities = 205/462 (44%), Positives = 301/462 (65%), Gaps = 5/462 (1%) Query: 6 KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 K + FLF+DYETFG H +LD+PAQF++IRTD FN++ EP+ FYC P+DDYLP P ++L Sbjct: 7 KNEVNFLFYDYETFGIHTSLDKPAQFSSIRTDKNFNIMEEPKCFYCFPSDDYLPDPSSIL 66 Query: 66 ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA 125 ITGITP+ G NE F+ +IH + P TCI+GYNN+ FDDE+TRNIFYRNF DPY Sbjct: 67 ITGITPEYTEKHGFNEYKFSKKIHDVLLKPNTCIIGYNNINFDDEITRNIFYRNFLDPYE 126 Query: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMA 185 WSW+++NSRWDLL+V+RACYALRP GI WP+N+ GLP F+L LT+ N I H NAHDA + Sbjct: 127 WSWKNNNSRWDLLNVVRACYALRPSGIQWPKNEFGLPVFKLSDLTQKNNISHYNAHDATS 186 Query: 186 DVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSW 245 DVYATI +AKL+K +QP+LFD+ F +R K++L LID+ + P+++VS FGA R N S Sbjct: 187 DVYATIELAKLIKRKQPKLFDFFFKYRKKNELCRLIDIEKFTPIIYVSSYFGALRQNMSC 246 Query: 246 VAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINK 305 + PL+W N+N +I +DL DI L+ + + + + D + + LV++N+ Sbjct: 247 ILPLSWDLHNKNILISIDLFKDIDKLI-----VFCKTVSISNISIKDLFDLGIVLVYLNR 301 Query: 306 CPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDA 365 CP+LA +R ED +RL + + ++++N + + V + + S NVD Sbjct: 302 CPILAPIKVIRKEDTNRLNFKKYFYYKKINLVKKNYFLIDLVKNVLLKKNENKNSLNVDL 361 Query: 366 QLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQ 425 Q+Y+ FF+ D+ +K + T+ +L + + F D R+++L F Y+ARNF L E++ Sbjct: 362 QIYDSFFNFHDKNLIKKISLTKSSDLKKMKLDFKDPRLKELFFRYKARNFFNILKNDEKK 421 Query: 426 RWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 W+ + + FL GY D+++ L++ Y+ D +K LL L Sbjct: 422 EWINYCLKTLNSFFLTGYIDKIESLLKIYSYDVKKNNLLSDL 463 >UniRef50_Q1QT40 Exodeoxyribonuclease I subunit C n=10 Tax=Proteobacteria RepID=Q1QT40_CHRSD Length = 495 Score = 445 bits (1145), Expect = e-123, Method: Compositional matrix adjust. Identities = 235/479 (49%), Positives = 309/479 (64%), Gaps = 18/479 (3%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 M GK + TFL+HDYETFG P DRPAQFAAIRTDS+FN +GEP FYCKPADD+LP P Sbjct: 1 MAQGKTEPTFLWHDYETFGADPRRDRPAQFAAIRTDSDFNPVGEPMTFYCKPADDFLPHP 60 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 A LITGITPQ AR +G E FAARIH+ +VP TC LGYN +RFDDEV+R++FYRNF Sbjct: 61 QACLITGITPQAARRRGLAEIEFAARIHAEMSVPGTCSLGYNTLRFDDEVSRHLFYRNFI 120 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 DPY+ WQ+ NSRWDL+DV+R +ALRP+GI WP +DG PSFRLE LT ANGIEH+ AH Sbjct: 121 DPYSREWQNGNSRWDLIDVVRTYHALRPDGIEWPTREDGAPSFRLEDLTAANGIEHAGAH 180 Query: 182 DAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG 241 DA+ADV ATI +A+L+K R +LF+YL R+K + ++D+ KP++HVS + A RG Sbjct: 181 DALADVRATIELARLLKARNAQLFEYLLKLRDKRTVARMLDIQARKPMLHVSRRYPASRG 240 Query: 242 NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAA-VPVKL 300 ++ V PLA HP N N VI+ DL+ D SPLL +++ +RER++ + +L + A +P+K+ Sbjct: 241 CSALVVPLAEHPSNPNGVIVYDLSVDPSPLLSMEAAQIRERVFASADELAEGEARIPLKV 300 Query: 301 VHINKCPVLAQANTLRPEDAD----------RLGINRQHCLDNLKILRENPQVREKVVAI 350 +HINK PV+ A +L+ D RLG++ C + K L+ P V K + Sbjct: 301 IHINKSPVIMPAASLKDVDGPQRGEYGALVARLGLDMAACRRHWKQLQAAPDVAAKAAEV 360 Query: 351 FAEAEPFTPSDNVDAQLYN-GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFN 409 FAE P P + D LY+ GFFS ADR M+ E +L F D R+E++LF Sbjct: 361 FAEG-PGAPPSDPDLMLYSGGFFSPADRREMQRAREMPAWDLAEASFAFQDPRLEEMLFR 419 Query: 410 YRARNFPGTLDYAEQQRWLEHRRQVFTPE-----FLQGYADELQMLVQQYADDKEKVAL 463 RARN+P TL EQ +W +R L G+A E++ L Q DD ++ L Sbjct: 420 LRARNYPDTLSSEEQAQWEAYRWARMNDAEVASLTLTGFAREIERLNQVPLDDAQRQVL 478 >UniRef50_C1DSN1 Exodeoxyribonuclease I n=1 Tax=Azotobacter vinelandii DJ RepID=C1DSN1_AZOVD Length = 476 Score = 433 bits (1113), Expect = e-120, Method: Compositional matrix adjust. Identities = 225/464 (48%), Positives = 305/464 (65%), Gaps = 13/464 (2%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 S+ ++DYET G +P DRP Q A IRTD N IG P YC+PADD LP P A L+TG Sbjct: 3 SSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGAPLNLYCRPADDILPHPAACLVTG 62 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 ITP+ +G EA F R+H+ +P TC GYN++RFDDE++R+ YRNF+DPYA W Sbjct: 63 ITPRLLAERGLCEAEFVTRLHAELALPGTCTAGYNSLRFDDEISRHALYRNFFDPYAREW 122 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 Q NSRWDL+D++R YALRPEGI+WP+ ++G S RLE LT ANGIEH AHDA+ADV Sbjct: 123 QAGNSRWDLIDLLRTAYALRPEGIHWPQ-EEGRVSLRLERLTAANGIEHGQAHDALADVR 181 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 ATIA+A+L++ RQP+L+ YL+ R+K +++ I + ++PLVHVSG F A RG + V P Sbjct: 182 ATIALARLLRERQPKLYGYLYQLRSKQRVLDQIRL--LRPLVHVSGRFAAERGYLAVVLP 239 Query: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAA-VPVKLVHINKCP 307 LAWHP NRNA+I+ DL D SPLL+LD++ LR RLY + +L DN + VP+KLVHIN+CP Sbjct: 240 LAWHPSNRNALIVCDLQADPSPLLDLDAEILRRRLYMRREELADNESPVPLKLVHINRCP 299 Query: 308 VLAQANTLRPEDADRLGINRQHCLDNLKIL-RENPQVREKVVAIFAEAEPFTPSDNVDAQ 366 VLA + LR ED RL ++ C +++L Q +EK+ I+ E F S++ + Q Sbjct: 300 VLAPLSVLREEDIGRLRVDMAECQRRVELLCAAQGQWQEKLARIYMGDE-FPASEDPEQQ 358 Query: 367 LYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQR 426 LY GFF + DR + V EP +L + F D+R+ +LLF YRARNFP TL AE + Sbjct: 359 LYGGFFGERDRRLCEQVRRAEPESLGRQNWGFDDERLPELLFRYRARNFPETLTAAEGEC 418 Query: 427 WLEHRRQVFT------PEFLQGYADELQMLVQQYADDKEKVALL 464 W E R+ + P L + +L+ L+ Q AD++ + L+ Sbjct: 419 WQEFCRRRLSDAAWGAPCTLGDFNVQLEQLLAQ-ADEEHRPILV 461 >UniRef50_P57620 Exodeoxyribonuclease I n=2 Tax=Buchnera aphidicola (Acyrthosiphon pisum) RepID=EX1_BUCAI Length = 413 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 197/415 (47%), Positives = 277/415 (66%), Gaps = 5/415 (1%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 M+ K+ FLF+DYETFG H ALD+PAQFA IRTD N+I +P+ FYC P+DDYLP Sbjct: 1 MIQFQKKTPNFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPD 60 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 PG+VLIT ITPQ G NE F+ +I+ + TC++GYNN+ FDDE+TRNIFYRNF Sbjct: 61 PGSVLITHITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNF 120 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 +DPY WSW++ NSRWD+L+++RACYALRP GINWP+N+ GL SF+L LTK N I H NA Sbjct: 121 FDPYEWSWKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNA 180 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 H+A++DVYATI +AKLVK +QPRLFD+ F R K++L LID+ +P++++S FGA Sbjct: 181 HNAVSDVYATIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIY 240 Query: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 N S + P+AWH N N +I +DL DI L+ + + ++ +L D+ V L Sbjct: 241 HNMSCILPIAWHENNSNILIAIDLFKDIKTLINMCKKICFDSIFIK--NLLDSGVV---L 295 Query: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 +H+N+CP+LA +R ED +RL +R ++++++N + + IF++ Sbjct: 296 LHLNRCPILAPIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNIKIIFSKNNNTNQF 355 Query: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNF 415 NVD ++YNGFF+ D+ ++I+ T+P L + F D R++ L F YRARNF Sbjct: 356 FNVDLEIYNGFFNSKDKKKIQIIRNTDPVFLKHIFCNFHDSRLKNLFFRYRARNF 410 >UniRef50_B3PLL7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacteria RepID=B3PLL7_CELJU Length = 497 Score = 427 bits (1097), Expect = e-118, Method: Compositional matrix adjust. Identities = 217/429 (50%), Positives = 285/429 (66%), Gaps = 7/429 (1%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 +Q T +HDYET+G PA+DRP QFA +RTD + N++GEP Y +PA D LP+P A LI Sbjct: 5 EQITLYWHDYETWGESPAIDRPVQFAGVRTDLDLNILGEPLTIYARPAPDVLPKPEACLI 64 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 TGITPQEA AKG +EA F A IH P TC +GYN++RFDDEVTR YRNFYDPY Sbjct: 65 TGITPQEAEAKGVSEADFIAAIHRELARPGTCGVGYNSIRFDDEVTRYTLYRNFYDPYER 124 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 W++ NSRWDL+DV+R ALRPEGI+WP+ +DG P F+LE LT+ N I H AHDA++D Sbjct: 125 EWRNGNSRWDLIDVLRMTRALRPEGIHWPDYEDGTPCFKLERLTEVNRISHEAAHDALSD 184 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWV 246 V+ATIAMA+L+K+RQP+L+DY F R+K +LID+ KPL+H+S F +GN + V Sbjct: 185 VHATIAMARLLKSRQPKLYDYAFRLRDKRFAASLIDIDGQKPLLHISSRFPGQQGNAALV 244 Query: 247 APLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAA-VPVKLVHINK 305 PLA+HP N+N+VI +LA D SPLL L D LR RL+TA DL + +P+K +H+NK Sbjct: 245 LPLAYHPANKNSVIAFNLAFDPSPLLNLPVDELRIRLFTASADLPEGVERLPLKEIHLNK 304 Query: 306 CPVLAQANTLRPEDADRLGINRQHCLDNLK-----ILRENPQVREKVVAIFAEAEPFTPS 360 P+L + A RL ++ C +L+ E + EK+ +++ A+ FT Sbjct: 305 TPMLVTTAMVDETLARRLQLDMAICEQHLRAWTQLTRTEREALAEKLDELYS-AQDFTGR 363 Query: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 + + QLY GFFSDAD+ M V P L + TF D R+ +LLF YRARNFP +LD Sbjct: 364 TDPEQQLYAGFFSDADKRLMSRVRTLSPDALAKTEWTFEDSRLPELLFRYRARNFPESLD 423 Query: 421 YAEQQRWLE 429 AEQQRW + Sbjct: 424 PAEQQRWFD 432 >UniRef50_A3WL65 Exonuclease I n=2 Tax=Idiomarina RepID=A3WL65_9GAMM Length = 486 Score = 419 bits (1077), Expect = e-115, Method: Compositional matrix adjust. Identities = 216/473 (45%), Positives = 302/473 (63%), Gaps = 9/473 (1%) Query: 4 DGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 63 + K Q TF +HDYET+G P +DRPAQFA +RT +F +G P Y +P D+LP P A Sbjct: 7 NNKNQPTFYWHDYETWGARPLIDRPAQFAGMRTTLDFQPVGRPLTIYAQPTPDFLPDPEA 66 Query: 64 VLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 VLITGITPQ A +G NEA FA I + P T I+GYNN+RFDDEVTR++ YRNFYDP Sbjct: 67 VLITGITPQYALNQGVNEANFAQAIVQEMSQPNTIIIGYNNIRFDDEVTRSLCYRNFYDP 126 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDA 183 YA +WQ+ NSRWDL+DV+RACYALRPEGI+WPE++DG + RLE LT+AN I+H AHDA Sbjct: 127 YAHTWQNGNSRWDLIDVVRACYALRPEGIHWPEDEDGRVTLRLEKLTQANRIDHGQAHDA 186 Query: 184 MADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNT 243 M+DV ATIAMA+L+ +QP+L+ + HR+K+ LM LI+ Q+KPLVHVSG++GA Sbjct: 187 MSDVRATIAMAQLLAEKQPKLWQFALQHRHKNDLMNLINWQQIKPLVHVSGLYGADNFFV 246 Query: 244 SWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAV--PVKLV 301 S V P+ +H + NA+I DL + + + ++ LR+ L+ ++ N + Sbjct: 247 SAVLPIGFHAQRANALIAWDLRINPADFADYSTEQLRDLLFASRQQHETNGTQRPGATQI 306 Query: 302 HINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEA--EPFTP 359 +N+CP LA TL E R I+ + + L EN R++++AIF A P Sbjct: 307 TLNRCPFLAPLATLTAEAQQRTQIDLATLRERTRWLAENSDFRDRIMAIFDSALEHGEQP 366 Query: 360 SDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTL 419 +VD +LY+GFF D+ ++++ P L +++ D R+ +LLF YRARN+P TL Sbjct: 367 PLDVDQRLYDGFFDAQDKQNLQMIRAMRPEQLAGIELNTQDNRLPELLFRYRARNYPATL 426 Query: 420 DYAEQQRWLEHRRQVFTPEF-----LQGYADELQMLVQQYADDKEKVALLKAL 467 D +E QRW + RQ T + +A++L+ L QQY D+K ++ LLK+L Sbjct: 427 DQSELQRWQQFCRQRLTEPTNGQLSITEFAEKLEGLAQQYQDNKHRMQLLKSL 479 >UniRef50_UPI0001911F1B exonuclease I n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. M223 RepID=UPI0001911F1B Length = 228 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 203/220 (92%), Positives = 211/220 (95%) Query: 248 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 307 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAK DLGD+AAVPVKLVHINKCP Sbjct: 1 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCP 60 Query: 308 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 367 VLAQANTLRPEDADRLGINRQHCLDNLK+LRENPQVR+KVVAIFAEAEPF SDNVDAQL Sbjct: 61 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFATSDNVDAQL 120 Query: 368 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 427 Y+GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD AEQQRW Sbjct: 121 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 180 Query: 428 LEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 LEHRRQV TPEFLQ YA+ELQML QQYA+DK K+ LLK+L Sbjct: 181 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSL 220 >UniRef50_Q4K7B4 Exodeoxyribonuclease I n=25 Tax=Pseudomonas RepID=Q4K7B4_PSEF5 Length = 497 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 213/422 (50%), Positives = 280/422 (66%), Gaps = 6/422 (1%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 ++ ++DYET G +P DRP Q A IRTD N I EP YC+P+DD LP P A +ITG Sbjct: 24 TSLFWYDYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMACMITG 83 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 ITP +G EA F R+H P TC +GYN +RFDDE+TR YRNF+DPYA W Sbjct: 84 ITPGRLAEQGLGEADFMTRVHEQLARPGTCGVGYNTLRFDDEMTRYSLYRNFFDPYAREW 143 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 Q NSRWDL+DV+R YALRP+GI WPE + G S +LE LT ANGI+H AHDA++DV Sbjct: 144 QGGNSRWDLIDVVRTAYALRPQGIVWPE-EQGQVSLKLERLTAANGIDHGQAHDALSDVR 202 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 ATIA+A+LV+ +QPRL+D+LF R+K ++M + + ++P+VH+SG F A R V P Sbjct: 203 ATIALARLVRDKQPRLYDWLFQLRSKQRVMDQVRL--LQPMVHISGRFSAARHYIGVVLP 260 Query: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA-AVPVKLVHINKCP 307 LAWHP NRNA+I+ DL D LLELD++TLR+RLYT + DL + VP+KL+HIN+CP Sbjct: 261 LAWHPRNRNALIVCDLHLDPQGLLELDAETLRQRLYTRREDLLEGELPVPLKLIHINRCP 320 Query: 308 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQV-REKVVAIFAEAEPFTPSDNVDAQ 366 V+A + LR ED RL ++ + L E +V R+K+ I+ E F SD+ + Q Sbjct: 321 VVAPLSVLRSEDQQRLHLDMELYQRRAVALSEAQEVWRDKLSVIYGPDE-FAASDDPEQQ 379 Query: 367 LYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQR 426 LY+GF D DR + V E +P +L F D+R+ +LLF YRARNFP TL+ AEQ+R Sbjct: 380 LYDGFIGDRDRRLCEQVREADPLHLAQQQWPFDDERLPELLFRYRARNFPETLNKAEQER 439 Query: 427 WL 428 WL Sbjct: 440 WL 441 >UniRef50_Q21I25 Exodeoxyribonuclease I subunit C n=2 Tax=Gammaproteobacteria RepID=Q21I25_SACD2 Length = 485 Score = 412 bits (1060), Expect = e-113, Method: Compositional matrix adjust. Identities = 200/427 (46%), Positives = 277/427 (64%), Gaps = 4/427 (0%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 Q TF +HDYET+G +PA+DRP+QFA +RTD + N+IGEP V YCKP +D P P A L+T Sbjct: 2 QKTFYWHDYETWGANPAVDRPSQFAGVRTDMDLNIIGEPLVIYCKPPEDIWPNPEACLVT 61 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 G+TPQE AKG E F +IH P TC +GYN++RFDDEVTR YRN++DPY Sbjct: 62 GLTPQETLAKGVTEREFIKQIHRELAKPGTCGVGYNSIRFDDEVTRYTLYRNYFDPYERE 121 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 W++ NSRWD++D++R CYALRPEGI WP DG PSFRLE+LTK NGI H++AHDA +DV Sbjct: 122 WRNGNSRWDIIDMVRLCYALRPEGIEWPVV-DGKPSFRLENLTKVNGIVHASAHDAYSDV 180 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 247 ATI +A+LV+ +QP L++++ +R K + L+DV KP++H+S F + G +A Sbjct: 181 EATIKLARLVREKQPALYEHVVNNRGKREATKLLDVASKKPMLHISSKFSSENGCAGLIA 240 Query: 248 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAA-VPVKLVHINKC 306 PLA+HP N+NAVI+++L D PL +L +D +R R++TA DL + +PVKL+H+NKC Sbjct: 241 PLAYHPVNKNAVIVINLNADPKPLFDLSADEIRARIFTATKDLPEGVERLPVKLIHLNKC 300 Query: 307 PVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQ 366 P+L L + RLGI++ C + L + + EK+ +FA E F S + + Sbjct: 301 PILLTPKILDEQAQARLGIDKAQCEKHWSQL-QRMDITEKLQQVFATNE-FEGSLDPERM 358 Query: 367 LYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQR 426 LY+GF D D+ M V + L + F DKR+ +L Y+ARNFP L +E+ Sbjct: 359 LYDGFVGDTDKYVMADVRKANGAELSKHNFVFSDKRLNDMLLRYKARNFPDDLTDSERAE 418 Query: 427 WLEHRRQ 433 W E Q Sbjct: 419 WREFVSQ 425 >UniRef50_A4ADV7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacteria RepID=A4ADV7_9GAMM Length = 482 Score = 412 bits (1059), Expect = e-113, Method: Compositional matrix adjust. Identities = 213/433 (49%), Positives = 276/433 (63%), Gaps = 9/433 (2%) Query: 6 KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 TF +HDYETFG PA DRP+QFA +RTD + N+IGEP V Y +P DY+P P A L Sbjct: 2 SSSETFYWHDYETFGVDPAYDRPSQFAGLRTDLDLNLIGEPLVIYAQPPRDYVPHPDACL 61 Query: 66 ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA 125 ITGITPQ A A+G EA F + I F P TC +GYN++RFDD VTR YRN DPYA Sbjct: 62 ITGITPQTALAEGVVEAQFMSTILDEFMKPGTCAVGYNSLRFDDTVTRATLYRNLRDPYA 121 Query: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMA 185 + SRWDL+DV+R YALRPEG+NWP DDGLPSFRLE L KANG+E AHDA+ Sbjct: 122 REYGDGRSRWDLIDVVRTAYALRPEGLNWPTRDDGLPSFRLEDLCKANGLEQGQAHDALV 181 Query: 186 DVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSW 245 DV ATIA+A+ +K +QPRLFD+LF R K + L+D P +P++HVSGMFGA R N Sbjct: 182 DVKATIALARAIKDKQPRLFDWLFRQRFKQAVKPLLD-PMAQPVLHVSGMFGARRANLGL 240 Query: 246 VAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVP-VKLVHIN 304 + PLA H +NRN VI DL+ D + +++L ++ L RLYT+ DLG+ P +K VHIN Sbjct: 241 ILPLAVHYQNRNEVICADLSVDAALIIDLPAEELHRRLYTSNADLGEGEVRPGIKSVHIN 300 Query: 305 KCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQ-----VREKVVAIFAEAEPFTP 359 +CPVL A+R G++ C NL+ LR + +R+K+ A+ +E P Sbjct: 301 RCPVLLPEKMADAAVAERSGLDLAVCHGNLQRLRAYDERMPGALRDKLRAV-SELSGREP 359 Query: 360 SDNVDAQLYN-GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGT 418 + D LY+ GF DR + VL P +L + F D R+E++LF YRARN+P T Sbjct: 360 ETDPDRMLYSGGFIPKEDRRTLDRVLALTPEDLATTTVAFEDTRLEEMLFRYRARNYPET 419 Query: 419 LDYAEQQRWLEHR 431 L+ E+ RW E+R Sbjct: 420 LNDEERARWEEYR 432 >UniRef50_A6VXX3 Exodeoxyribonuclease I n=4 Tax=Oceanospirillales RepID=A6VXX3_MARMS Length = 484 Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust. Identities = 197/426 (46%), Positives = 279/426 (65%), Gaps = 3/426 (0%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 ++F + D+ET GT PA DRP QFA IRTD +FN IGEP +FYC+ A+D LPQP A L+TG Sbjct: 7 TSFFWFDFETTGTDPARDRPMQFAGIRTDLDFNPIGEPIMFYCRLAEDVLPQPEACLLTG 66 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 I+PQ+A +G EA F + + + P TC LGYN +RFDDEV R FYRNF DPY W Sbjct: 67 ISPQDANREGLCEAEFMQAVEAELSQPGTCALGYNTIRFDDEVVRYGFYRNFIDPYTREW 126 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 Q++ SRWD++D++R YA+RPEGI WP+N+DG S +LE LTKANGI H AHDA++DVY Sbjct: 127 QNNCSRWDMIDLVRMTYAMRPEGIVWPKNEDGQVSMKLEALTKANGIAHEQAHDALSDVY 186 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 TI +AKL++++QP+LF Y F R KH+L IDV ++KP +H+SGMFG + ++V P Sbjct: 187 GTIEIAKLIRSKQPKLFAYYFKMRQKHELQQFIDVVRLKPFLHISGMFGQAKNYAAFVVP 246 Query: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308 +A HP N+N VI+ DL D PL++L + +R R++T + +LGD +P+K++H NK P Sbjct: 247 IAPHPTNKNGVIIFDLMADAQPLIDLSVEEIRHRVFTRQEELGDLERLPLKVIHYNKSPA 306 Query: 309 LAQANTLRPED-ADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 367 +A A L+ D RL ++ C NL I++ + + K+ +F + + D D L Sbjct: 307 VAPATFLKDVDVVKRLALDGSVCRHNLAIIKGHAGLAAKLSDVFMQEDRPIHKDP-DVML 365 Query: 368 YN-GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQR 426 Y+ GFFS DR M+ + T L L ++F D+R+ ++L Y RN+P L +Q Sbjct: 366 YSGGFFSREDRVRMEKIRSTPANQLSELAMSFDDRRLPEMLMRYIGRNYPDQLSEQQQFE 425 Query: 427 WLEHRR 432 W E+R+ Sbjct: 426 WEEYRQ 431 >UniRef50_Q0AEW3 Exodeoxyribonuclease I subunit C n=2 Tax=Nitrosomonas RepID=Q0AEW3_NITEC Length = 486 Score = 407 bits (1046), Expect = e-112, Method: Compositional matrix adjust. Identities = 203/435 (46%), Positives = 278/435 (63%), Gaps = 2/435 (0%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 ST +HDYET G +P DRP QFA +RTD N IG+P V YCKPA D LP P A L+TG Sbjct: 6 STLYWHDYETSGANPRQDRPVQFAGLRTDEALNEIGDPLVIYCKPARDRLPHPEACLLTG 65 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 ITPQ A +G E F A IH+ P TC +GYN +RFDDEVTR YRNFYDPYA W Sbjct: 66 ITPQMAATRGLPEPEFIALIHAQLAQPGTCGVGYNTLRFDDEVTRFALYRNFYDPYAREW 125 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 Q NSRWD++D+ R +ALRPEGINWP N +G PSFRLE +T ANG+ H +AHDA++DV Sbjct: 126 QSGNSRWDVIDLARMTFALRPEGINWPVNGEGKPSFRLEDITAANGLMHDSAHDALSDVR 185 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 ATIA+A+L++ RQPRL+D+LF R+K + L+D+ P++H S M+ + +G T+ V P Sbjct: 186 ATIALARLLRDRQPRLYDWLFRLRDKREASHLLDLTAHTPVLHTSRMYPSEQGCTTLVMP 245 Query: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAA-VPVKLVHINKCP 307 L N N++++ DL D + ++L+ D L ERL+T K +L + +PVK + +NKCP Sbjct: 246 LLPETGNTNSILVYDLRHDPAEFMQLNVDALVERLFTPKLELAEGQQRLPVKTIRLNKCP 305 Query: 308 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 367 LA L E A R+G+N + C + ++L ++P +++ ++ + F P ++ D L Sbjct: 306 ALAPQKVLNDEIAKRIGLNDEQCQQHWQLLLQHPDFMQRIRQAYSNGKIF-PENDADLAL 364 Query: 368 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 427 Y+GF +D DR +V ++EP L L F D R +LLF YRARNFP TL E+ RW Sbjct: 365 YDGFANDHDRNLFPLVRDSEPERLIDLSEEFQDGRYAELLFRYRARNFPDTLSAQEKHRW 424 Query: 428 LEHRRQVFTPEFLQG 442 H R+ + + G Sbjct: 425 QVHCRRQLGEDAING 439 >UniRef50_Q89A43 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=EX1_BUCBP Length = 481 Score = 405 bits (1041), Expect = e-111, Method: Compositional matrix adjust. Identities = 193/461 (41%), Positives = 292/461 (63%), Gaps = 10/461 (2%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 TFLF+DYETFG +PALD+P+QF+ I+TD +FN+IG + +C P+ DYLP P +VLITGI Sbjct: 10 TFLFYDYETFGKNPALDKPSQFSCIQTDIDFNIIGSIQEIFCYPSVDYLPDPESVLITGI 69 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 +P+ G NE FA +I+SLF TCI+GYNN+ FDDE TRNIFYRNF + Y WSW+ Sbjct: 70 SPKYTSLFGVNEFEFAKKIYSLFMKSDTCIIGYNNIYFDDEFTRNIFYRNFLNSYEWSWK 129 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 + NSRWD+LD++RACY LRPEGINWP N+D S RL ++ AN I H+ AH+A +DVYA Sbjct: 130 NGNSRWDMLDLLRACYVLRPEGINWPRNEDNSVSLRLSDISLANNIVHNVAHNASSDVYA 189 Query: 190 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 249 T+ +AKL+K ++P+LF++ F +R K ++ LIDV + P+V++S FG S++ P+ Sbjct: 190 TMNIAKLIKQKKPKLFNFFFKYRTKKAILTLIDVNSLNPIVYISRFFGVVNRYISYIVPI 249 Query: 250 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVL 309 WHP N N ++ +DL+ D+ +L +R + + + ++ +++N+CP+L Sbjct: 250 LWHPINSNILVSIDLSQDVQKILN-----FFKRNSILNVNYKEIFLMGIRFIYVNRCPIL 304 Query: 310 AQANTLRPEDADRLGINRQHCLDNLKILREN---PQVREKVVAIFAEAEPFTPSDNVDAQ 366 N +R +D RL IN + +NL +LR+N + +K + AEA + S NVD + Sbjct: 305 IPTNVIRMKDRIRLRINYKLFQNNLVLLRKNIFLKKKLKKFLCSIAEAPKYNGS-NVDLK 363 Query: 367 LYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQR 426 +YN FFS D +K + T P+ + ++ D RI +L + AR P LDY+E+ Sbjct: 364 MYNSFFSYIDNNVIKNIHSTLPKRI-KINFMKYDNRINQLFILFLARYRPDMLDYSEKYF 422 Query: 427 WLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 W++ +F+ +Q Y +++ L+ +Y + V LL+ L Sbjct: 423 WIQRYLNIFSYANIQKYENKILKLIVKYKNHVRNVQLLEEL 463 >UniRef50_A0Z9I3 Exonuclease n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z9I3_9GAMM Length = 483 Score = 396 bits (1018), Expect = e-109, Method: Compositional matrix adjust. Identities = 206/432 (47%), Positives = 267/432 (61%), Gaps = 6/432 (1%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 +F +HDYET G + DRP QFA +RTD FNVI EP V YC+P+ D L P A+ +TGI Sbjct: 6 SFYWHDYETSGANVFEDRPLQFAGVRTDKNFNVISEPLVHYCRPSPDCLLHPAAIRVTGI 65 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 +P +A A+G NE AF A+I F VP TC LGYN+VRFDDE+TR YRNF+ PYA + Sbjct: 66 SPYKALAEGANEGAFMAKIQREFMVPGTCALGYNSVRFDDEITRFALYRNFFPPYAREFG 125 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 + SRWDL+DV RA YALRP+GI WP +DGLPSFRLE LT ANGI+H NAHDA+ADV A Sbjct: 126 QNRSRWDLIDVARAIYALRPDGIVWPIREDGLPSFRLEDLTAANGIDHGNAHDALADVLA 185 Query: 190 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 249 TIA+AKL+ QP LFD L+ R K + L++ KP++HVSG FGA R N + V PL Sbjct: 186 TIALAKLLSKAQPTLFDTLYAQRGKQAIAPLLNCLDPKPVIHVSGQFGAQRDNLAIVLPL 245 Query: 250 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAA-VPVKLVHINKCPV 308 A HP N+N VI DL G+ L+ S+ +R+ L+T K D P+K++ IN+ PV Sbjct: 246 AVHPTNKNGVICADL-GEAPAFLDQSSEDVRQLLFTPKADFPAGVQRPPLKMIQINRAPV 304 Query: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEA----EPFTPSDNVD 364 + + E A RL ++ +L R QV K F E F P + D Sbjct: 305 VLPTTWVSGEPAQRLRLDGDQTRASLAAYRVARQVDPKGFTRFIEEIYADRAFAPRSDPD 364 Query: 365 AQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQ 424 QLY GF D A ++ + + P +L + TF D+R+ ++ F YRARNFP +LD E+ Sbjct: 365 TQLYEGFLGRHDEALLETIRQATPDSLASHTWTFEDRRLPEVFFRYRARNFPESLDPDEK 424 Query: 425 QRWLEHRRQVFT 436 RW EH R+ T Sbjct: 425 ARWREHCRETLT 436 >UniRef50_Q21WQ6 Exodeoxyribonuclease I subunit C n=24 Tax=cellular organisms RepID=Q21WQ6_RHOFD Length = 485 Score = 390 bits (1001), Expect = e-107, Method: Compositional matrix adjust. Identities = 204/436 (46%), Positives = 273/436 (62%), Gaps = 8/436 (1%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 M TFL+HDYETFGT+ DRPAQFAAIRTD+E NVIG P + YC+PA D+LP P Sbjct: 1 MTPSPSHHTFLWHDYETFGTNTRRDRPAQFAAIRTDAELNVIGAPLMLYCQPAGDFLPDP 60 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 A LITGITPQ KG E FAA+I F++P T +GYN +RFDDE+TR +F+RN Sbjct: 61 QACLITGITPQLCLEKGIPEYQFAAQIEQAFSLPGTVGVGYNTIRFDDEITRFMFWRNLI 120 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 DPYA WQ+D RWDLLDV+R YALRP+G+ WP N +G PSF+L L+ ANG+ H AH Sbjct: 121 DPYAREWQNDCGRWDLLDVVRTAYALRPDGMEWPLNAEGKPSFKLTDLSAANGLLHEAAH 180 Query: 182 DAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVP----QMKPLVHVSGMFG 237 DA++DV ATIA+A+L+KT QP+LFD+ F K ++MA + +P Q +P +H+SGMF Sbjct: 181 DALSDVRATIALARLIKTAQPKLFDFCFGLHKKDRVMAELGLPTTLTQARPFLHISGMFA 240 Query: 238 AWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAA-V 296 RG + + PLA HP N+N ++ DLA D L +++++ +R RL+T DL + + Sbjct: 241 PERGCLALMWPLAMHPANKNELLAWDLAFDPRELAQMNAEQIRLRLFTKTADLPEGVQRL 300 Query: 297 PVKLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAE 355 PVK +H+NK P V+ TL A R G+N L N + P + A+F Sbjct: 301 PVKSIHLNKSPTVIGNYKTLSSAMAQRWGLNLDAQLANAAHAQALPDMSGIWPAVFKRPA 360 Query: 356 PFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNF 415 TP +VD LY GF +ADR + + + + + L + F D R+ +LL+ YRARNF Sbjct: 361 AATP--DVDEDLYGGFVGNADRRRLNDLRQLKAQELASARPAFDDARLTELLWRYRARNF 418 Query: 416 PGTLDYAEQQRWLEHR 431 P +L E RW HR Sbjct: 419 PQSLSADELARWEAHR 434 >UniRef50_D2UDX2 Putative exodeoxyribonucleaseIprotein n=1 Tax=Xanthomonas albilineans RepID=D2UDX2_XANAL Length = 492 Score = 386 bits (992), Expect = e-106, Method: Compositional matrix adjust. Identities = 213/473 (45%), Positives = 287/473 (60%), Gaps = 9/473 (1%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 62 +D +FLF+D ETFG P R AQFAA+RTD+ N I EP F+ +PADD LP P Sbjct: 10 HDATMPDSFLFYDLETFGADPRRTRIAQFAAVRTDAALNQIEEPISFFVQPADDLLPSPV 69 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 A LITGITPQ+A +G NEA ARI P+TC LGYN++RFDDE R+ +RNF+D Sbjct: 70 ATLITGITPQQALREGINEADAFARIAEQMAQPQTCTLGYNSLRFDDEFIRHGLFRNFHD 129 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHD 182 PY W+ NSRWDLLD++R +ALRP+GI WP+ +DG SF+LE L ANG+ +AH+ Sbjct: 130 PYEREWRGGNSRWDLLDMLRLMHALRPDGIVWPQREDGATSFKLEQLALANGVRDGDAHE 189 Query: 183 AMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGN 242 A++DVYATI MA+ + QPRL++Y R+K +L+DV M+P++HVS + A R Sbjct: 190 ALSDVYATIGMARHFRRCQPRLWEYALKLRDKRFCASLLDVTAMQPVLHVSMRYPASRLC 249 Query: 243 TSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAA-VPVKLV 301 + V PL HP + V++ DL GDI+ LL + + +RLYT + DL + + +K V Sbjct: 250 AAPVLPLTRHPRIDSRVVVFDLEGDINTLLRCTPEEIADRLYTPQADLPEGEQRIALKEV 309 Query: 302 HINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRE-NPQVREKVVAIFAEAEPFTPS 360 H+NK P L LR + +RLGI+ L +RE P + EKV +FA P+ Sbjct: 310 HLNKAPALVAWAHLREAEFERLGIDPAQALAKAARMREAGPTLAEKVRRVFASERATMPA 369 Query: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 D VDA LY+GF +D D+ AM V T P L L+ F D R+ +LLF YRARN+P TL Sbjct: 370 D-VDASLYDGFLADTDKRAMAQVRATAPMQLAPLEHGFRDPRLPELLFRYRARNWPQTLS 428 Query: 421 YAEQQRWLEHRRQVFTPE------FLQGYADELQMLVQQYADDKEKVALLKAL 467 AEQ RW ++RR+ + + YA +L L + +D K ALL L Sbjct: 429 IAEQTRWDDYRRRRLEVDNGLSELTFETYAAQLADLRLAHPEDATKQALLDQL 481 >UniRef50_B8KPJ8 Exodeoxyribonuclease I n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KPJ8_9GAMM Length = 482 Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust. Identities = 204/429 (47%), Positives = 263/429 (61%), Gaps = 9/429 (2%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 T +HDYETFG P DRPAQFA +RTD + N IGEP V Y KP DY+P P A LITGI Sbjct: 6 TLYWHDYETFGVDPGYDRPAQFAGLRTDLDLNPIGEPLVLYAKPPRDYVPHPDACLITGI 65 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 TPQ A A G EA F I F TC +GYN++RFDD VTR YRN DPYA + Sbjct: 66 TPQAALAAGVPEADFIKAILHEFMQRGTCAVGYNSLRFDDTVTRATLYRNLRDPYAREYG 125 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 SRWDL+D++R YALRPEG+ WPE DDGLPSFRLE L +ANG+ AHDA+ DV A Sbjct: 126 DGRSRWDLIDIVRTAYALRPEGLIWPERDDGLPSFRLEDLCEANGLAQGRAHDALVDVQA 185 Query: 190 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 249 TIA+A+L+K RQPRLF +L+ R K + L++ P +P++HVSGMFGA R N + PL Sbjct: 186 TIALARLLKERQPRLFQWLYQQRFKQAVKPLLE-PMSQPVLHVSGMFGAQRANLGLILPL 244 Query: 250 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVP-VKLVHINKCPV 308 A H +NRN V+ DL+ D L +L + L L+TA DL + P +K VHIN+CPV Sbjct: 245 AAHHQNRNEVMCADLSIDADLLTDLPAAELHRLLFTANADLAEGEQRPGLKSVHINRCPV 304 Query: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQ-----VREKVVAIFAEAEPFTPSDNV 363 L A R ++ + C NL+ LR+ Q +R+K+ ++ +E P + Sbjct: 305 LLPAKMADAAVTQRADLDLEACRANLQHLRDYEQHMPGALRDKLRSV-SELSTRAPETDP 363 Query: 364 DAQLYN-GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 422 D LY+ GF DR + +L+ P +L + F D R++++LF YRARN+P TL Sbjct: 364 DRMLYSGGFIPKEDRRTLDRILDLSPEDLADTTVAFDDLRLQEMLFRYRARNYPQTLSAE 423 Query: 423 EQQRWLEHR 431 EQ RW E R Sbjct: 424 EQLRWEEFR 432 >UniRef50_Q605A2 Exodeoxyribonuclease I n=1 Tax=Methylococcus capsulatus RepID=Q605A2_METCA Length = 478 Score = 384 bits (986), Expect = e-105, Method: Compositional matrix adjust. Identities = 198/426 (46%), Positives = 264/426 (61%), Gaps = 3/426 (0%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 +F ++D ETFGT PA DR AQFA +RTD EFN IG P+V YC+P+DD +P P A L+TGI Sbjct: 6 SFYWYDLETFGTDPARDRIAQFAGLRTDLEFNPIGPPDVLYCRPSDDMVPYPDACLVTGI 65 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 TPQ A G E+AF A IH +F P TC+LGYN +RFDDE+ R+ FYRN YDPYA W+ Sbjct: 66 TPQYAAELGVPESAFIATIHRIFMRPGTCVLGYNTLRFDDEMLRHAFYRNLYDPYAREWK 125 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 NSRWD++D+ R ALRP+GI WP + G P F+LE L ANGI H +AHDA++DV A Sbjct: 126 GGNSRWDVIDLARLTQALRPDGIEWPRDSLGSPVFKLERLAAANGIRHESAHDALSDVRA 185 Query: 190 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 249 T+A A+L+ RQPRLF + R K + L+ + +P++HVS F A R + V PL Sbjct: 186 TVAFARLIAERQPRLFQFALESRAKGAVERLLALGAWQPVLHVSEKFSASRHCIACVLPL 245 Query: 250 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDL-GDNAAVPVKLVHINKCPV 308 HP VI+ DLA D + L +L D +R RL+T +L +P+K VH N+CPV Sbjct: 246 CRHPRIATRVIVFDLASDPAQLSDLSVDEIRRRLFTPSAELPAATGRLPLKGVHTNRCPV 305 Query: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQ-VREKVVAIFAEAEPFTPSDNVDAQL 367 + + LRP D +RLGI+ C + L+++ + + K+ A F F + + + L Sbjct: 306 VVPMSALRPADGERLGIDAVLCRRRARWLQDHAEDIIPKISAAFEVDASFEAASDPELML 365 Query: 368 Y-NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQR 426 Y GF DADR A+ V P L FVD R ++LLF +RARNFP TL+ E++R Sbjct: 366 YRGGFIPDADRRALDQVHRLTPDQLAHYRPRFVDGRFDELLFRFRARNFPETLNAEERER 425 Query: 427 WLEHRR 432 W RR Sbjct: 426 WTAFRR 431 >UniRef50_Q2P315 Exodeoxyribonuclease I n=17 Tax=Xanthomonadaceae RepID=Q2P315_XANOM Length = 481 Score = 384 bits (985), Expect = e-105, Method: Compositional matrix adjust. Identities = 205/467 (43%), Positives = 284/467 (60%), Gaps = 9/467 (1%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 +FLF+D ETFG P R AQFAA+RTD++ VI EP F+ +PADD LP P A ++T I Sbjct: 4 SFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMVTAI 63 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 TPQ A +G EA ARI + P+TC LGYN++RFDDE R +RNFYDPY W+ Sbjct: 64 TPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYEREWR 123 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 NSRWDLLDV+R +ALRP+GI WP+ +DG SF+LEHL AN + +AH+A++DVYA Sbjct: 124 GGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANDVREGDAHEALSDVYA 183 Query: 190 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 249 TI MA+ + QP+L+DY R+K L+DV M+P++H+S + A R + V PL Sbjct: 184 TIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAVLPL 243 Query: 250 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA-AVPVKLVHINKCPV 308 HP + VI+ DL GD LL L D + +RLY DL + +P+K VH+NK P Sbjct: 244 TRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYIRAADLPEGERRIPLKEVHLNKSPA 303 Query: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRE-NPQVREKVVAIF-AEAEPFTPSDNVDAQ 366 L LR D +RLG+++ L +RE P++ EKV ++ +E P +++ DA Sbjct: 304 LVAWQHLRAADFERLGVDQDAVLAKAARMRELGPELAEKVRQVYGSERAPAAATNDADAS 363 Query: 367 LYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQR 426 LY+GF ++ D+ + V + P L AL+ F D R+ +LLF YRARN+P TL + EQ+R Sbjct: 364 LYDGFLAEGDKRLLAQVRTSAPAELCALESRFRDPRLIELLFRYRARNWPQTLSFDEQER 423 Query: 427 WLEHRRQVFTPE------FLQGYADELQMLVQQYADDKEKVALLKAL 467 W +RRQ + L+ Y ++ L + + DD K ALL L Sbjct: 424 WNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQL 470 >UniRef50_A2R5F8 Remark: it is assumed (Fragment) n=1 Tax=Aspergillus niger CBS 513.88 RepID=A2R5F8_ASPNC Length = 298 Score = 381 bits (979), Expect = e-104, Method: Compositional matrix adjust. Identities = 175/176 (99%), Positives = 175/176 (99%) Query: 38 SEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKT 97 EFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKT Sbjct: 123 GEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKT 182 Query: 98 CILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPEN 157 CILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPEN Sbjct: 183 CILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPEN 242 Query: 158 DDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRN 213 DDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRN Sbjct: 243 DDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRN 298 >UniRef50_Q7VQX2 Exodeoxyribonuclease I n=2 Tax=Candidatus Blochmannia RepID=Q7VQX2_BLOFL Length = 501 Score = 362 bits (928), Expect = 2e-98, Method: Compositional matrix adjust. Identities = 190/481 (39%), Positives = 286/481 (59%), Gaps = 21/481 (4%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 ++ TFL +DYETFG +PALDRPAQFA+IR ++ + + EVF+C+ +DYLP P +VLI Sbjct: 6 KKPTFLIYDYETFGLNPALDRPAQFASIRVNNSLCPVEKKEVFFCQIPNDYLPNPESVLI 65 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 TGITP + + G E FA +I F VP TCILGYNN+ FDDE +RNIFYRNFYDPY W Sbjct: 66 TGITPYDTLSNGLLEPQFAYQISQKFNVPNTCILGYNNISFDDEFSRNIFYRNFYDPYKW 125 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 S+ H NSRWDLL V+RA Y+L P GI WP N SFRL LT AN I+H NAHDA +D Sbjct: 126 SYHHGNSRWDLLPVLRAFYSLYPTGIQWPINSKKKVSFRLTDLTLANSIQHLNAHDATSD 185 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGN-TSW 245 ++AT+ + KL+K QP+LF +L+ HR K++L +I++ MKPL+H+S N + Sbjct: 186 IFATLEIMKLIKYTQPQLFQFLYNHRTKNQLQKIINLNSMKPLIHISNKINNKYNNFIHF 245 Query: 246 VAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGD-NAAVPVKLVHIN 304 + P+ HP N N +I +L + L L+ +TL + + + + + +P++L+ +N Sbjct: 246 LLPITLHPNNHNVLITYNLLNKLDILWNLNINTLYQNIKDNQQCIYNLLKQIPLQLIRLN 305 Query: 305 KCPVLAQANTLRPED-----ADRLGINRQHCLDNLKILREN---PQVREKVVAIFAEAEP 356 CP+ L+ + L + Q+ L NL +++ +++K+ + + E Sbjct: 306 SCPIFIPITVLQENNNIFKYTSELLSDYQNHLKNLHEIKQKINYTHLQQKIKSFYVIIES 365 Query: 357 FTP------SDNVDAQLYNGFFSDAD-RAAMKIVLETEPRNLPALDI--TFVDKRIEKLL 407 + S +VD QLYNGFF +D R +I T+ + L + I D R++ LL Sbjct: 366 YLNKIKNKLSTHVDNQLYNGFFQYSDCRIIKQIRNITDVQKLSTIHINSNSNDNRLKSLL 425 Query: 408 FNYRARNFPGTLDYAEQQRWLEHRRQ-VFTPEFLQGYADELQMLVQQYADDKEKVALLKA 466 F YR+RNFP TL+ E++ W +++ + + + Y + L+ ++ +K+ LL + Sbjct: 426 FFYRSRNFPHTLNSEEKKIWTTYKKNMLLNQDKYKNYLHHINYLLFN-QNNIKKINLLSS 484 Query: 467 L 467 L Sbjct: 485 L 485 >UniRef50_B4SPA5 Exodeoxyribonuclease I n=3 Tax=Stenotrophomonas RepID=B4SPA5_STRM5 Length = 479 Score = 355 bits (912), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 206/466 (44%), Positives = 283/466 (60%), Gaps = 9/466 (1%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 +FLF+D ETFG P R +Q+AAIRTD++ N I P F+ +PADD LP P A L+TGI Sbjct: 4 SFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLVTGI 63 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 TPQ+A A+G +EA RI+ + P TC LGYN +RFDDE R +RNF+DPY W+ Sbjct: 64 TPQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYEREWR 123 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 + NSRWDLLD++R A+RPEGI WP +DG SF+LEHL +AN + +AH+A++DV A Sbjct: 124 NGNSRWDLLDMLRLMRAMRPEGIQWPLREDGATSFKLEHLAEANNVREGDAHEALSDVRA 183 Query: 190 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 249 TI MA+L K QPRL+DY R+K + +L+DV MKP++H+S + A R + V PL Sbjct: 184 TIGMARLFKQSQPRLWDYALKLRDKRFVGSLLDVAAMKPVLHISMRYPASRLCAAPVLPL 243 Query: 250 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAA-VPVKLVHINKCPV 308 + HP N VI+ DL GDI LLEL ++ + +RLY ++L + A VP+K V +NK P Sbjct: 244 SMHPTVNNRVIVFDLDGDIDDLLELPAEVIAQRLYMRASELPEGATRVPLKEVQLNKVPA 303 Query: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRE-NPQVREKVVAIFAEAEPFTPSDNVDAQL 367 L N LR +D RLG++ + LR PQ+ EK ++ + +D VDA L Sbjct: 304 LIAWNHLRADDHARLGLDVAAIEAKAERLRAFAPQLAEKARQVYNQPRVANVAD-VDASL 362 Query: 368 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 427 Y+GF D+ + + T P L AL+ F D R+ +LLF YRARN P +L E+QRW Sbjct: 363 YDGFLGAGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPDSLAPDERQRW 422 Query: 428 LEHRRQ------VFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 ++RRQ L Y +L L + DD + LL++L Sbjct: 423 QDYRRQRLLGDGGLGELNLPQYQQQLDALAAEAPDDARRQDLLQSL 468 >UniRef50_A4BJV3 Putative exodeoxyribonuclease i protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BJV3_9GAMM Length = 517 Score = 346 bits (887), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 187/467 (40%), Positives = 276/467 (59%), Gaps = 10/467 (2%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 M N+ ++L++DYET+GT P+ DR AQFAA+RTD + N+I EP +CKP D + Sbjct: 1 MPNNATHPPSYLWYDYETWGTVPSRDRIAQFAAVRTDMDLNIIEEPINLFCKPDIDTVID 60 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 PGAV IT ++P E G +E F+ +H+ P TC GYN++RFDDE +R +FYRN Sbjct: 61 PGAVQITRLSPLELEQTGLSEWEFSQAVHNAMAQPNTCTTGYNSIRFDDECSRFLFYRNL 120 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 +PY W++ NSRWDLLDV+R +ALRP+GI WP DDG PSFRLEHLT ANG+ H+NA Sbjct: 121 INPYEREWKNGNSRWDLLDVVRMTHALRPDGIEWPRRDDGSPSFRLEHLTAANGLSHANA 180 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 HDA++DV ATIA+A+L++ +QP+LFDY F+ R+KH+ ID+ KP +H SG A Sbjct: 181 HDAVSDVKATIALAQLIRKQQPKLFDYAFSLRSKHRAREAIDLVGGKPHLHFSGKIPASE 240 Query: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA-AVPVK 299 PL HP+ N VI++D+ D + +L+ D+DTLR LY +L + A P+K Sbjct: 241 FCMGIEVPLMAHPDRNNEVIVIDIREDPAWILDHDADTLRTWLYAKTEELPEGARRPPLK 300 Query: 300 LVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTP 359 +H+N+ P++A + L E RLG++ + + + ++P++ + +F E + Sbjct: 301 TIHLNRSPMIAPMSLLDDETTTRLGVDLDAIQHHYRWVADHPELNRLAMDVFTETQERAA 360 Query: 360 SDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFV--DKRIEKLLFNYRARNFPG 417 + + LY+GF SD D+A + + + LD + + D R+ +L N AR FP Sbjct: 361 ITDPEQALYSGFISDHDQALLNRMRTGKLPPEQWLDNSHLLQDDRLPTILLNLLARAFPD 420 Query: 418 TLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALL 464 L + W + RR +L DE + + Q D +ALL Sbjct: 421 CLTEQQLSEWQDQRRT-----YLIEQQDERHLTLSQALTD--TLALL 460 >UniRef50_C0B120 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=C0B120_9ENTR Length = 274 Score = 340 bits (871), Expect = 8e-92, Method: Compositional matrix adjust. Identities = 156/265 (58%), Positives = 207/265 (78%), Gaps = 1/265 (0%) Query: 204 LFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVD 263 +FDY F R+K K+ ALID+P M P+VHVSGMFGA R N S VAPLAWHP+NRNAVI+ D Sbjct: 1 MFDYFFNLRDKRKVQALIDIPAMTPIVHVSGMFGAARSNLSLVAPLAWHPDNRNAVIVCD 60 Query: 264 LAGDISPLLELDSDTLRERLYTAKTDLG-DNAAVPVKLVHINKCPVLAQANTLRPEDADR 322 L+ DISPLL L SD LRERLYT +++L D VP+KL+HINKCP++A NTLRP+DADR Sbjct: 61 LSADISPLLTLTSDQLRERLYTPRSELAVDEPPVPIKLLHINKCPIVAPQNTLRPQDADR 120 Query: 323 LGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKI 382 +G++ CL+N IL +P++R KVV +FA+ PF SD+VD+Q+YNGFFS+ DR+AM+I Sbjct: 121 IGLDVDTCLNNQAILFSHPEIRNKVVELFAQQTPFVVSDDVDSQIYNGFFSENDRSAMEI 180 Query: 383 VLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQG 442 + T+P+NLPALD+TF D R+E L F YRARN+P TL+Y EQQRWL HR+++ TPE L Sbjct: 181 IRSTQPQNLPALDLTFEDARMEPLFFRYRARNYPSTLNYDEQQRWLAHRKEMLTPEKLNE 240 Query: 443 YADELQMLVQQYADDKEKVALLKAL 467 Y + +Q+L ++Y+D++EK+ L+ L Sbjct: 241 YINTIQLLAEKYSDNEEKLKQLQEL 265 >UniRef50_Q056Y2 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q056Y2_BUCCC Length = 475 Score = 318 bits (814), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 149/456 (32%), Positives = 252/456 (55%), Gaps = 6/456 (1%) Query: 12 LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITP 71 +F+DYETFG + ALD+ +QF +I TD++F+ I + + +C P DYLP P A+LIT I P Sbjct: 11 IFYDYETFGKNVALDKVSQFCSIETDNKFSYIIKKTILFCYPPIDYLPDPEAILITKILP 70 Query: 72 QEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHD 131 Q G NE + +IH +F+ CI+GYNN+ FD+ +TRNIFYRN +DPY WSW+++ Sbjct: 71 QYTYKYGLNEYFLSKKIHDIFSQKNICIIGYNNINFDNLITRNIFYRNLFDPYEWSWKNN 130 Query: 132 NSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATI 191 N WD+L+++RA Y P+ + W N +G SF+L +T N I+H + HDA +DVYAT Sbjct: 131 NFSWDILNILRAFYIFLPKSMCWYYNSNGTVSFKLSDITLVNNIKHIHIHDAYSDVYATF 190 Query: 192 AMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAW 251 + K + ++ F YL+ K + + + KP ++S FG+ N + + Sbjct: 191 LITKYLFSKYKNFFLYLYMISKKKYISSFLLNNINKPFFYISSFFGSINYNFGCIMYIGL 250 Query: 252 HPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQ 311 HP +N +++ DL+ D + L ++ T + V +K+V I+K P+ Sbjct: 251 HPLYKNNIVIFDLSSDFKKIFN-----LYKKYSTCLISIKKLFNVGIKVVSISKSPLFFS 305 Query: 312 ANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGF 371 N++ + RL I+ C N +L+ N ++ +++ F+ + +D +D LYN F Sbjct: 306 YNSVSLKHCIRLNIDYLKCQKNFFLLKNNFLIKNWIISCFSYKKKEKIND-IDLMLYNNF 364 Query: 372 FSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHR 431 F ++DR + + + EP+ F+D RI+KL F +ARNF L++ E ++W + Sbjct: 365 FLNSDRCLLSFIHKNEPKKWMGWSANFLDNRIKKLFFRLKARNFIKLLNFNEIKKWQFYC 424 Query: 432 RQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 + L+ Y ++++ ++ + + LL+ L Sbjct: 425 KNKINFIKLEEYFEKIKKFQLKFNKNDKNFILLEDL 460 >UniRef50_UPI0000E0E98F exodeoxyribonuclease I n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0E98F Length = 488 Score = 317 bits (813), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 174/429 (40%), Positives = 253/429 (58%), Gaps = 10/429 (2%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 ++FLFHDYET+G P D P QFAAIRTD EP K DYLP P AVL+TG Sbjct: 6 ASFLFHDYETWGISPQHDYPCQFAAIRTDENLQQCDEPINITAKIHLDYLPHPQAVLVTG 65 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 ITPQ A+GE E F +IH P TC++GYN+++FDDEV+R F+RNF DPY + Sbjct: 66 ITPQMTLAEGEYEYTFMQKIHQAMIQPNTCVVGYNSIKFDDEVSRFSFFRNFMDPYQREY 125 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 H NSRWDL++++RACYALRPEGI WP D+GL SF+LE LT+ NGI H+NAHDA++DV+ Sbjct: 126 LHGNSRWDLINLVRACYALRPEGIKWPLGDNGLVSFKLERLTQENGISHTNAHDALSDVH 185 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 ATIA+A+L++ +QP+LF Y + R+K ++ +++ +PL+ ++ A G S + P Sbjct: 186 ATIAIAQLIQQQQPKLFAYAYQLRSKQAVIRILEQHHGQPLIFINPYRSAKFGCVSIIMP 245 Query: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAA-VPVKLVHINKCP 307 + HP N+NA + +DL DI PL+ D DTL+ + K + + ++ N+CP Sbjct: 246 MCPHPVNKNATVCIDLTKDIFPLINEDLDTLQRIQFLPKAQRNEETPDIATIVIKHNQCP 305 Query: 308 VLAQANTLRPEDADRLGINRQHC---LDNLKILRENPQVREKVVAIFAEAEPFT-----P 359 LA TL ++ L I+ +++LK + ++ + ++ + T P Sbjct: 306 FLAPIKTLSQSRSEALNIDLNKVDQQVEHLKHICQDQESYANLIMTLTQLNSQTYDAEKP 365 Query: 360 SDNVDAQLYN-GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGT 418 + +V+A LY GF +DA++ + V P L L RI++L + ARNF T Sbjct: 366 ATDVEASLYTGGFMNDAEKQFCQQVHMASPNELVNLKNNTPSPRIDELFQRFIARNFLDT 425 Query: 419 LDYAEQQRW 427 L Q +W Sbjct: 426 LSTDLQSQW 434 >UniRef50_B8KX06 Exonuclease I n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KX06_9GAMM Length = 408 Score = 308 bits (790), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 168/381 (44%), Positives = 234/381 (61%), Gaps = 13/381 (3%) Query: 77 KGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWD 136 +G++E F +IH+ VP TC +GYN++RFDDEV R YRNF+DPY + + NSRWD Sbjct: 3 RGDSECDFVDKIHAALAVPGTCGVGYNSIRFDDEVMRFALYRNFFDPYQREYANGNSRWD 62 Query: 137 LLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKL 196 L+DV RA YALRPEG WP D+GLPSFRLE LT ANGI H AHDA++DV ATI +A+ Sbjct: 63 LIDVARAIYALRPEGTQWPARDNGLPSFRLEDLTAANGIAHGAAHDALSDVDATIDLARH 122 Query: 197 VKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENR 256 + QP LF L + R K + L+D+ ++P+VHVS M+G+ R N + V PL HP NR Sbjct: 123 FQNVQPALFAELLSMRRKRHVETLMDLGSLRPVVHVSSMYGSDRSNLALVVPLVRHPVNR 182 Query: 257 NAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAV-PVKLVHINKCPVLAQANTL 315 N +I DL+ L E +D + RL+T ++L + A P+K +HINK PV+ + Sbjct: 183 NEIICADLSQPPDFLSESATD-MAARLFTPASELPEGAVRPPIKTIHINKSPVVLNTQWV 241 Query: 316 RPEDADRLGIN----RQHCLDNLKILRENPQ-VREKVVAIFAEAEPFTPSDNVDAQLYNG 370 R E A+RLG++ R+H + + +NP+ +++++ I++E F P + D LY+G Sbjct: 242 RGEVAERLGLDGEAHRRHLAEIRQANDKNPEGLKQRLQDIYSERR-FAPRTDPDVMLYDG 300 Query: 371 FFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEH 430 FF ++DR+ + P L A F D R+E+LLF YRARNFP TLD E RW EH Sbjct: 301 FFPNSDRSQFDGLRAASPEQL-ASGWVFEDARLEELLFRYRARNFPATLDAEESARWQEH 359 Query: 431 RRQVF----TPEFLQGYADEL 447 R + P L + +EL Sbjct: 360 CRHRYFDADAPFPLTAFREEL 380 >UniRef50_A5CVQ8 Exodeoxyribonuclease I n=4 Tax=Gammaproteobacteria RepID=A5CVQ8_VESOH Length = 473 Score = 306 bits (783), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 163/427 (38%), Positives = 247/427 (57%), Gaps = 11/427 (2%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 TF ++DYETFG P +DR +QFA IRTD FN++ E ++FYCKP +D L P LITGI Sbjct: 3 TFYWYDYETFGISPKIDRISQFAGIRTDENFNILDE-QMFYCKPTNDCLLSPETCLITGI 61 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 +PQ KG E F +IH+ + P TC++GYN++RFDDE TR YRNF DPY W W+ Sbjct: 62 SPQLCEQKGMIEHKFIKKIHAQLSTPDTCVIGYNSIRFDDEFTRYALYRNFIDPYTWHWK 121 Query: 130 HDNSRWDLLDVMRACYALRPE-GINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 + N+RWD+LDV+R CYAL+ + + W ++ F+L+ L+ AN IEH+ AH+A+ADVY Sbjct: 122 NGNTRWDILDVVRLCYALKKDTSLKWVYDEQNKVIFKLDQLSLANNIEHTYAHNALADVY 181 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 ATIA+AK++K QP+LF+Y F+ R K + I + +P++H S ++ A T Sbjct: 182 ATIAIAKIIKKTQPQLFNYAFSLRKKKTIKEKIKL--FEPMLHTSRVYSATLSCTRLSVA 239 Query: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLG---DNAAVPVKLVHINK 305 LA+H + + V + +L D LLEL+ TL+ ++T + + +K + NK Sbjct: 240 LAYHSYH-DRVFVFNLDQDPCILLELNIKTLKTLMFTKNNQSALSKEMKGLQIKELIFNK 298 Query: 306 CPVLA-QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVA-IFAEAEPFTPSDNV 363 P+ L + +L I+ CL L+ +++N + KVV ++ + PS +V Sbjct: 299 SPMFVPNVYKLESKIIKQLKIDMSTCLQRLEFIKKNQVIISKVVQDLYRNDQQRQPSSDV 358 Query: 364 DAQLYNGFFSD-ADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 422 D LY+ F +D D+ + L F D R+ KLL +++ARN+P L Sbjct: 359 DQALYDDFINDNTDKHICNQIQTLSTNELKNFHPKFKDNRLSKLLIHFKARNYPNILTEN 418 Query: 423 EQQRWLE 429 E++ W + Sbjct: 419 EKEEWFK 425 >UniRef50_A5KSP8 Exodeoxyribonuclease I n=2 Tax=candidate division TM7 RepID=A5KSP8_9BACT Length = 476 Score = 302 bits (773), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 171/446 (38%), Positives = 246/446 (55%), Gaps = 8/446 (1%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 MM D + TF F+D ET G P DR QFA RT + + IGEP + DD LP Sbjct: 1 MMKDMAE--TFFFYDLETSGLDPRRDRIMQFAGQRTTMDLDPIGEPFNILVRLNDDVLPS 58 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 P AV++TGITPQ+ +G EA F H+ P T +G+NN+RFDDE R +RNF Sbjct: 59 PDAVMVTGITPQKTHEEGIAEAEFIKLFHNQVCTPGTVTVGFNNIRFDDEFIRFALWRNF 118 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 +DPY W+W+ SRWDLLDV+R ALRP GI WP + P+ RLE LT N +EHS A Sbjct: 119 HDPYEWAWKDGRSRWDLLDVVRMTRALRPGGIVWPVDKSDKPTNRLELLTSENNLEHSQA 178 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 HDA++DVYA IA+ ++V+ +QP+LF+YLF+ R+K + L++ + KP+V+ SG + A Sbjct: 179 HDALSDVYALIAITRMVRDKQPKLFEYLFSIRDKKAVTQLVNPYKPKPIVYTSGRYDANY 238 Query: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDN--AAVPV 298 TS V P+A + DL + +L + +++RL + D A+PV Sbjct: 239 HKTSVVFPIA-EGSRPGTTFVYDLRHNPQQFTDLSPEEIKKRLLAKWEERKDPNFVAIPV 297 Query: 299 KLVHINKCPVLAQANTLRPEDA-DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPF 357 K V N+ P +A L + + + + +L++L+ +P + K+ + E+ F Sbjct: 298 KEVTHNRAPAVAPLGVLEQGGGWENIQLTNETVRKHLEVLQRSPDLVTKIKTAY-ESRSF 356 Query: 358 TPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPG 417 S + +AQLY+ F +D D+ ++ V R L F DKR+ LL Y+ARNFP Sbjct: 357 PKSSDAEAQLYDSFLNDKDKTHIQAVRNASERELADFHPEFNDKRLPPLLIRYKARNFPR 416 Query: 418 TLDYAEQQRWLEHRRQVFTPEFLQGY 443 +L EQ W +R E L GY Sbjct: 417 SLSEEEQVEWEAYRATRLQAE-LPGY 441 >UniRef50_D0KZN4 Exodeoxyribonuclease I n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KZN4_HALNC Length = 495 Score = 287 bits (735), Expect = 5e-76, Method: Compositional matrix adjust. Identities = 175/485 (36%), Positives = 262/485 (54%), Gaps = 28/485 (5%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 +FLF+D+ET G+ P DRP QFAA+RT+ E I P Y + + LP P AVL+TGI Sbjct: 2 SFLFYDFETTGSDPRCDRPIQFAALRTNDELEPIDSPLTLYATLSPEVLPHPQAVLVTGI 61 Query: 70 TPQE-ARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 PQ A + G EA FAA IH+ P TC +G+N++RFD E+ R +F+RN DPYA W Sbjct: 62 LPQTLASSGGRPEAEFAALIHAEMMQPGTCAVGFNSLRFDAELLRFMFWRNLRDPYAHEW 121 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 + NSRWD+LD RA LRPEGI+WP ++ G P+ RLE LTK N I H+NAHDA+ DV Sbjct: 122 KSGNSRWDVLDAARAFRLLRPEGIHWPTDEQGAPTLRLEALTKVNVIAHANAHDALGDVE 181 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 AT+A A+L++ + P+LF+YL + R K + +D P+ VHVSG + G+ S A Sbjct: 182 ATLAFARLMRAQSPKLFEYLLSLRKKAVVADFVDNPERASFVHVSGRISSTLGSASVFAN 241 Query: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA-AVPVKLVHINKCP 307 L ++ DL D + +L+ D +TL R + D DN +P+KL+H+N+ P Sbjct: 242 LGQVQGINTQRLLWDLRFDPTEVLDDDMETLAARRFLRDADAQDNQHRLPIKLLHLNRAP 301 Query: 308 VLAQANTLRPED-ADRLGINRQHCLDNLKILRE-NPQVREKVVAIFAEAEPFTPSDNVDA 365 V+ L+ D +R+ ++ N + + + +V +K+ A+ AE F S + + Sbjct: 302 VVVPNAILKEGDIVERMQLDLDAVQKNTRTMAQFKREVADKLHAVLAEQMAFA-SQDAEC 360 Query: 366 QLYNGFFSDADRAAM---------KIVLETEPRNLPALDI-------TFVDKRIEKLLFN 409 LY GF + DR A+ + ++ P + ++ D R+ +L+F Sbjct: 361 ALYEGFMPNVDRYALDDFNRVFDQAMAAGGSAQDEPVTEALRKLMAQSWQDARLPELVFR 420 Query: 410 YRARNFPGTLDYAEQ---QRWLEHRRQVFTPEFLQGYADELQMLVQQYAD----DKEKVA 462 + AR P L+ E+ Q W++ R + G+A + AD D+ +A Sbjct: 421 FVARLRPDLLNEDERTQWQSWVDSRLNAAPDQRYMGFAGFFAAIDALMADAAYRDEATLA 480 Query: 463 LLKAL 467 LL L Sbjct: 481 LLTQL 485 >UniRef50_C0QKN8 SbcB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKN8_DESAH Length = 471 Score = 156 bits (395), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 143/476 (30%), Positives = 219/476 (46%), Gaps = 43/476 (9%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 TFLF+D ET G +PA D+ FAAIRTD E I + +D +P PGA + + Sbjct: 3 TFLFYDIETSGLNPAFDQILTFAAIRTDLELREIDRTSIV-ISLRNDIVPSPGAFITHRL 61 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 TP++ + G E A IH L P T +GYN++ FDDE R FYRN DPY + Sbjct: 62 TPEDLK-DGLCEYQGVALIHRLLNTPDTISIGYNSLGFDDEFLRFAFYRNLLDPYTHQYA 120 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSN-AHDAMADVY 188 +D +R DLL + +P+GI+WP DD S RLE +++ N + S AHDAM DV Sbjct: 121 NDCARMDLLPIATLYRIFKPDGIHWPVIDDK-ASMRLELISEKNNLVQSGRAHDAMTDVE 179 Query: 189 ATIAMAKLVKTRQPRLFDY---LFTHRNKHKLMALID------VPQMKPLVHVSGMFGAW 239 AT+A+A+ + + Q R+++Y F +N + +D + + + VS FG+ Sbjct: 180 ATLALARRL-SGQKRMWNYCLDFFDKKNDQARLDAVDEVFQSIFGRHRLCIMVSVSFGS- 237 Query: 240 RGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVK 299 + +++AP+ ++ + S L LD +E + K D GD V K Sbjct: 238 --DLTYMAPVL-------SLGHSTPYANQSLWLRLD----KELVLPFKPDSGDGPFVLRK 284 Query: 300 LVHINKC--PVLAQA-NTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAE- 355 K P L + N L P Q C N+ +L+ N +K+V + Sbjct: 285 RYGEAKIVLPSLDRFWNRLTPS-------QHQVCEKNIAMLKANQDEFQKLVIHHRSFKY 337 Query: 356 PFTPSDNVDAQLY-NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARN 414 PF P ++DA LY +GFFS ++ M + + T V R++ L RN Sbjct: 338 PFVPDLDLDASLYQDGFFSSVEKKEMGVFHRAINNGEMGVCETLVSPRVKGLAQRIVLRN 397 Query: 415 F---PGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 F A R++ R + ++GY ++L+ A + V + L Sbjct: 398 FYEQAAPEVRAGHDRYMVKIRGPLGDDPVKGYRNDLKFTCDMAAQELASVRSAQGL 453 >UniRef50_B5K7E4 Exodeoxyribonuclease I n=3 Tax=Rhodobacteraceae RepID=B5K7E4_9RHOB Length = 500 Score = 150 bits (378), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 118/378 (31%), Positives = 182/378 (48%), Gaps = 31/378 (8%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F+F+D ET G PA D+P QFAAI TD F V + C+ A LP P A+++T +T Sbjct: 3 FVFYDLETTGLSPAFDQPLQFAAIYTDENF-VEKDRVNIRCRLAPHILPSPQALVVTRVT 61 Query: 71 P-QEARAKGENEAAFAARIHSLFTVPKTCI-LGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 P Q + F+ ++ L I +GYN ++FD+EV R FYRN P ++ Sbjct: 62 PDQLTDPSLPSLFEFSQQVAELTERWAPAIWVGYNTIKFDEEVLRQTFYRNL-SPNVYAT 120 Query: 129 QHD-NSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 Q + N+R+D+L + A Y P+ + WP++D G SF+L+ L ANG + NAHDA+ DV Sbjct: 121 QFNGNTRFDILPAVYAAYVREPDLLAWPKDDTGRRSFKLDRLAPANGFKAHNAHDALGDV 180 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 247 ATI +A+L+ R P L+ L + +K ++ A ++ +P V+ FG + Sbjct: 181 EATIHIARLIAMRSPALWSELLDNAHKARVQAKLE--SFRPYELVT-RFGGGEPRSYTGC 237 Query: 248 PLAWHPENRNAVIMVDL-AGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKC 306 + NR DL A D + +E E ++ A D ++ V NK Sbjct: 238 FCGYSQGNRAQAAFFDLDAADPAEFVEASD----EAIFAAV----DATPKIIRGVSTNKA 289 Query: 307 PVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAE---AEPFTPSDNV 363 P L + E R ++ E P R +V A A +P P V Sbjct: 290 PALLEHTAPSEEHLRRAA-----------VIAEAPAFRLRVGAAMAARFVEDPDAPPKPV 338 Query: 364 DAQLYNGFFSDADRAAMK 381 + Q+Y F+S+AD+ ++ Sbjct: 339 ERQIYGEFYSNADKQLLQ 356 >UniRef50_B9NSM4 Exodeoxyribonuclease I n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NSM4_9RHOB Length = 469 Score = 148 bits (374), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 122/427 (28%), Positives = 201/427 (47%), Gaps = 39/427 (9%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F F D ET GT PA D+P QFA I TD + ++ C+ + LP P A+ +TG++ Sbjct: 2 FAFFDLETSGTSPAFDQPLQFAGILTDDTLEEVERIDI-RCRLSPHILPAPWALAVTGVS 60 Query: 71 PQEARAKGENEA-AFAARIHSLFT--VPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 P A F+ + SL P T GYNN+ FD+++ R +FY+N + + Sbjct: 61 PGMLSNPNLPSAFEFSQEVSSLIHRWGPATWT-GYNNIAFDEQMLRQMFYQNLHPNLYLT 119 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 N R D++ ++ A + L + + WP ++ G +F+L+ L ANG +N HDA+ADV Sbjct: 120 QMDGNDRMDIMKLVYATWVLANDALTWPTDEAGKITFKLDQLAPANGFVSNNFHDALADV 179 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMF--GAWRGNTSW 245 ATI +AKL++ R P ++ +R+K+ + ++ Q+ L+ G A+RG Sbjct: 180 EATINIAKLIRDRAPDVWVQSLRNRSKNNVQDIMQSGQVLTLIERFGATPPRAYRG---- 235 Query: 246 VAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINK 305 A +P+NRNA+ ++DL D+ +D +TL +A + + V+ V IN Sbjct: 236 -AYAGQNPDNRNALALMDL--DL-----VDPNTLDPTDASAIANAVSASPKTVRTVAINN 287 Query: 306 CPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAE-----AEPFTPS 360 P L + + I+ L+ + LR N ++ + AE +EP Sbjct: 288 APNLFE-----------VPIDDSDLLNRAEDLRGNHDLQTALGNALAERFADRSEP---- 332 Query: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 D V+ ++Y GF+S D+ + + F D+R++ L N P L Sbjct: 333 DQVEQKIYAGFYSTDDKKRLNQFEFASWAKRIEIAQAFEDRRLQWLASRLIYLNEPSLLS 392 Query: 421 YAEQQRW 427 Q W Sbjct: 393 RYAQDYW 399 >UniRef50_A3XEM3 Exonuclease I n=3 Tax=Rhodobacteraceae RepID=A3XEM3_9RHOB Length = 459 Score = 133 bits (334), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 114/378 (30%), Positives = 173/378 (45%), Gaps = 31/378 (8%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F+F+D ET G P D+P QFAAI TD F V + C+ A LP P A+++T +T Sbjct: 3 FVFYDLETTGISPEFDQPLQFAAIWTDENF-VEKDRVNIRCRLAPHILPSPQALVVTRVT 61 Query: 71 P-QEARAKGENEAAFAARIHSLFTVPKTCI-LGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 P Q + F+ ++ I +GYN ++FD+EV R FY+N P ++ Sbjct: 62 PDQLIDPSLPSLFEFSQQVAEFTERWAPAIWVGYNTMKFDEEVLRQTFYQNL-SPNIYAT 120 Query: 129 QHD-NSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 Q + N+R+D+L + A Y P + WP +D G SF+L+ L ANG NAHDA+ DV Sbjct: 121 QFNGNTRFDILPAVYAAYVRHPGLLVWPTDDTGRRSFKLDRLAPANGFNAHNAHDALGDV 180 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 247 ATI +A+L+ TR P L+ L + +K ++ A ++ +P V+ FG + Sbjct: 181 EATIHIARLIATRSPALWSELIDNAHKARVQAKLE--SFRPYELVT-RFGGGEPRSYVGC 237 Query: 248 PLAWHPENRNAVIMVDL-AGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKC 306 + N DL A D S L E ++ A D ++ V NK Sbjct: 238 FCGYSHGNSAQAAFFDLDAADPSEFLGASD----EAIFAAV----DATPKIIRGVSTNKA 289 Query: 307 PVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAE---AEPFTPSDNV 363 P L + E L I+ P+ +V A A + P V Sbjct: 290 PALLEHTAPSAEH-----------LHRATIIANAPEFLRRVGAAMANRFVEDSDAPPKPV 338 Query: 364 DAQLYNGFFSDADRAAMK 381 + Q+Y F+S AD+ ++ Sbjct: 339 ERQIYGEFYSSADKQLLQ 356 >UniRef50_B6J811 Exodeoxyribonuclease I n=7 Tax=Gammaproteobacteria RepID=B6J811_COXB1 Length = 458 Score = 130 bits (327), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 91/301 (30%), Positives = 141/301 (46%), Gaps = 18/301 (5%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 + T+LF+D ET G + D+ QFAAIRTD N + E+ + D +P P A+ Sbjct: 2 SNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEIL-IRLNPDVIPSPEAM 60 Query: 65 LITGIT-PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 +I + Q K E EA IH P T +GYN + FDDE R FYRN P Sbjct: 61 IIHRFSIDQMLSGKAEIEAI--REIHQSVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPP 118 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDA 183 Y + + R DL + Y +P +NWP+ D +LE+L+KAN + AH+A Sbjct: 119 YTHQYDNFCGRMDLYPLTILYYLFKPNALNWPDPFD----LKLENLSKANQLAEGQAHNA 174 Query: 184 MADVYATIAMAKLVKTRQP--RLFDYLFTHRNKHKLMALIDVPQMKPL------VHVSGM 235 M DV A++A+AKL+ ++ R F + + + ++ + + V + G+ Sbjct: 175 MVDVEASVALAKLLMNQEAMWRYVIGYFDKKTETQRLSQLPIGIQSTFGSHHEGVLIQGV 234 Query: 236 FGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAA 295 FGA + V L H +N + + L D LL D++ + Y + +G+ Sbjct: 235 FGAQLAYQAPVICLGQHNHYKNQCLWLRL--DREELLSTTVDSIPQTTYAIRKKMGEQPI 292 Query: 296 V 296 V Sbjct: 293 V 293 >UniRef50_A4IYM7 Exonuclease n=19 Tax=Francisella RepID=A4IYM7_FRATW Length = 482 Score = 125 bits (314), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 86/269 (31%), Positives = 128/269 (47%), Gaps = 16/269 (5%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 T LF+D ET G + + D+ QFAAIRTD +FN I E F+ K D P P A + I Sbjct: 6 TLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEI-ERFNFFVKLNPDTTPSPMATITHHI 64 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 + +A G E +IH + P T +GYN + FDDE R FY+N PY+ ++ Sbjct: 65 SIAQANT-GIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSHQFK 123 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPEN-DDG----LPSFRLEHLTKANGIEHSNAHDAM 184 + SR DL ++ Y E +NWP+ D+G N AHDA+ Sbjct: 124 NGCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAHDAI 183 Query: 185 ADVYATIAMAKLVKTRQPRLFDYL---FTHRNKHKLMALIDVP------QMKPLVHVSGM 235 DV T+ +AK ++ P+++ +L F +N + +DV + K + VSG+ Sbjct: 184 TDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAVSGI 243 Query: 236 FGAWRGNTSWVAPLAWHPENRNAVIMVDL 264 FG+ S + L H +N I + L Sbjct: 244 FGSKNNFISAILDLGQHRHYKNQEIFLRL 272 >UniRef50_D0RRC0 Exodeoxyribonuclease I n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RRC0_9RICK Length = 473 Score = 120 bits (302), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 98/382 (25%), Positives = 176/382 (46%), Gaps = 30/382 (7%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 ++F+D+ET G D+ Q AI + F+++ E C +P+PGA+L+ T Sbjct: 3 YVFYDFETTGRSSTWDQIIQVGAILVNDTFDILDRFEA-RCSLKPGTVPEPGALLVNKTT 61 Query: 71 PQEARAKGENEAAFAARIHSLFTV-PKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 P + + + F +GYN++ FD+E R F+++ D Y + Sbjct: 62 PDMLKKTNLSHFGMVQMMKETFEKWSPAMFIGYNSLSFDEEFLRKTFFKSLTDVYLTN-T 120 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 + N R D+L ++R+ + PE + P ++ G F+L+ + NGI H NAHDAM DV A Sbjct: 121 NGNKRGDILGLVRSAHLYYPECLKTPISEKGNAVFKLDQIASMNGISHDNAHDAMGDVLA 180 Query: 190 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 249 T+ MAK++ + P ++ +K + ++ Q + L V+ F + V+ + Sbjct: 181 TMGMAKIIADKAPSVWKASLMTMSKQDVGNIV---QKEKLFCVNEYFYG-KARPFVVSFV 236 Query: 250 AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVL 309 HP N DL D ++D TL++ + + L + V NK P++ Sbjct: 237 CNHPV-YNWPQCFDLKNDPEDYFKMDMSTLKDAMKKSPKLL--------RSVKDNKHPII 287 Query: 310 AQANTLRPEDA-DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL- 367 N D ++GI++ + + + +++N + +KV AI E ++D+QL Sbjct: 288 MNPNYATNFDTYKQIGISKLN--ERAEKIKQNEEFGKKVSAILQEEA--QEKQDLDSQLD 343 Query: 368 -------YNGFFSDADRAAMKI 382 Y+G F D D+ M + Sbjct: 344 VQAEESIYSGGFPD-DKTKMAL 364 >UniRef50_Q07NS2 Exodeoxyribonuclease I subunit C n=5 Tax=Alphaproteobacteria RepID=Q07NS2_RHOP5 Length = 490 Score = 120 bits (300), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 109/384 (28%), Positives = 169/384 (44%), Gaps = 49/384 (12%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV------ 64 F+F D ET G D+ FAAIRTD++ N EV + +P P A+ Sbjct: 3 FVFFDTETTGLRHGFDQIVHFAAIRTDNDLNETDRFEV-RSRLLPHVVPHPSALRTNRLS 61 Query: 65 ---LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 LI G P + A S+F +GYN++RFD+E+ R+ ++ + Sbjct: 62 IERLIDGTLPSHYEMVRAIQRTLLAWSPSIF-------VGYNSIRFDEEMLRHALFQTLH 114 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 Y S + N R D L ++ A L P + P +G P FRL+ L N ++H AH Sbjct: 115 PAYLTS-NNGNCRADALGLIMAAATLSPACLVVPLGPEGRPIFRLDQLASVNDLKHDQAH 173 Query: 182 DAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMF-GAWR 240 DAMADV AT+ + +LV+ R P L+ K + ++ G F + Sbjct: 174 DAMADVAATLDLCRLVRERAPELWQRFIRFSKKATVGDFVESED--------GFFLTEFF 225 Query: 241 GNTSWVAP---LAWHPENRNAVIMVDLAGDISP-LLELDSDTLRERLYTAKTDLGDNAAV 296 N ++ AP L P+ N + + L D+ P L L D + +AK Sbjct: 226 SNQAYHAPVVCLGPDPDQPNGRLCLRL--DVPPEELALMPDEALQAYLSAKPS------- 276 Query: 297 PVKLVHINKCPVLAQANTLRPEDADRL---GINRQHCLDNLKILRENPQVREKVVAIF-A 352 PV+ + IN P L + DA L G + D + L+E+ R ++++++ A Sbjct: 277 PVRRLRINASPTLTAFH-----DAPDLMLNGADLDELEDRARRLKEDAAFRSRIISLYVA 331 Query: 353 EAEPFTPSDNVDAQLYNGFFSDAD 376 E F PS +V+ Q+Y+G D Sbjct: 332 VRESFAPSLHVEGQIYDGLLGPDD 355 >UniRef50_C5B4J5 Putative Exodeoxyribonuclease I n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4J5_METEA Length = 491 Score = 95.9 bits (237), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 70/220 (31%), Positives = 111/220 (50%), Gaps = 24/220 (10%) Query: 50 YCKPADDYLPQPGAVLITGITPQEARAKGE-NEAAFAARIHSLFTVPK----TCILGYNN 104 YC +P GA+ + P A +E + AA IH + + PK +LGYN Sbjct: 54 YC------IPAYGALSTNRLDPYALEATDRTDEFSAAASIHGILS-PKPGRPLVVLGYNI 106 Query: 105 VRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSF 164 + FD+E+ R F+RN DPYA S R+DLL R +AL P+ ++DDG PSF Sbjct: 107 LSFDEEIVRTTFFRNLLDPYATS-AKGVRRFDLLPAARLAHALDPDAFPAGQDDDGGPSF 165 Query: 165 RLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVP 224 RLE + ANGI AHDA+ D AT+A+A+ +++ P ++ ++++ + D Sbjct: 166 RLERIAPANGI-GLRAHDALEDARATLALARRLRSSVPAAWETCLRASDRYEAERVFDAA 224 Query: 225 QMK--PLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMV 262 + P+ ++G GN + P +P +N ++V Sbjct: 225 AARNEPVWVLAG------GNAPVLEPA--YPVGKNGRLLV 256 >UniRef50_B4WCZ9 Exonuclease family n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WCZ9_9CAUL Length = 476 Score = 92.8 bits (229), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 98/370 (26%), Positives = 168/370 (45%), Gaps = 22/370 (5%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F+F+D ET G D+ QFAAI TD + N + E+ C+ +P P A+L ++ Sbjct: 3 FVFYDTETTGLSKGFDQIVQFAAIHTDGDLNELDRFEL-RCRLQPHVVPHPKAMLANRLS 61 Query: 71 PQ---EARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 + + + R L + +GYN++RFD+E+ R+ F++N + Y S Sbjct: 62 IERLTDLSLPSHYDMVREIR-RRLSGWGRGIFIGYNSIRFDEEMLRHAFFQNLFPAYLTS 120 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 R D + ++ A + P DG +FRLE + ANG+ AHDAMAD Sbjct: 121 -TPGCGRADAMHIVLTACADASACLTLPLAADGRKTFRLEAVAAANGLNVDAAHDAMADA 179 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 247 T+A+ + V + P ++ NK A+ D+ +PL ++ +G + + VA Sbjct: 180 QMTLALCRRVASEAPEIWSRAIRTSNK---AAVADLVASEPLFILTEFYG-FEASHRVVA 235 Query: 248 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 307 L N N + DLA D + ++L +D L + + P++ + N P Sbjct: 236 CLGPEAGNPNGRLCWDLASDPAEAVQLQTDDLAALISQREG--------PLRRLKTNAAP 287 Query: 308 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTP-SDNVDAQ 366 +A + PED ++ + L+ NP++ +++ A +P S +V+ Q Sbjct: 288 AIAMSWDA-PEDWALGDVDEAE--RRAEWLQANPELSSRIIEAQAARWANSPLSPHVELQ 344 Query: 367 LYNGFFSDAD 376 LY+ F D D Sbjct: 345 LYDRFPDDDD 354 >UniRef50_B8K5Y6 Exonuclease I n=1 Tax=Vibrio parahaemolyticus 16 RepID=B8K5Y6_VIBPA Length = 96 Score = 87.8 bits (216), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 44/88 (50%), Positives = 60/88 (68%), Gaps = 1/88 (1%) Query: 380 MKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEF 439 M I+ +T+P NL ALDI+F D RI LLF YRARNFP TLD +EQQRW H R F Sbjct: 1 MDIIRQTDPNNLAALDISFNDDRIAPLLFRYRARNFPATLDESEQQRWANHCRDYFESR- 59 Query: 440 LQGYADELQMLVQQYADDKEKVALLKAL 467 ++ Y L+ LV ++ D++K+A+LK++ Sbjct: 60 IEDYMLNLENLVHEHESDEKKLAILKSV 87 >UniRef50_A1ZTJ0 Exodeoxyribonuclease I, putative n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZTJ0_9SPHI Length = 487 Score = 86.3 bits (212), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 91/373 (24%), Positives = 150/373 (40%), Gaps = 33/373 (8%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 + +F+D + G +P D+ + TD FN++ E K D +P P A++ Sbjct: 19 KNKNLVFYDTRSSGDNPVFDQILRADTYVTDHAFNLL-ETHHIEIKKRPDVVPSPEALIA 77 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 P + AKG E IH LF P + +GY N+ DD + R FYRN PY Sbjct: 78 NNWLPSDL-AKGSTEYEAMRHIHELFNTPHSYNVGYGNLNNDDLLVRFGFYRNGLTPYTH 136 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 WQ R DL ++ Y P + + +N G S L+ + +ANG+ + Sbjct: 137 QWQRSCRRVDLRTIVTLYYLQAPNALVFSKNAAGKVSLELDDIAQANGL---TVGKGATN 193 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQ-----MKPLVHVSGMFGAWRG 241 + +AKL+ P L++ +K + + Q + + V GA G Sbjct: 194 AQTIMELAKLLHNANPMLWEQALGFFDKKEDQNRVKAAQGQIEGVNGALLVDAQLGADAG 253 Query: 242 NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLV 301 V L ++ + V + D L L++ L R + K L D + L Sbjct: 254 FQQPVHVLGQVGKDVHYVPL-----DDPDLSTLNTKNLESRFWVQKKKLTDEKLL---LN 305 Query: 302 HINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD 361 ++ P + DA R + ++ N + NP + ++ + + + F + Sbjct: 306 WKHRDPAVF--------DAARGALIKR----NAAFVANNPNLMQQ-LGEYVAGKSFAHRN 352 Query: 362 NV--DAQLYNGFF 372 NV DAQLY G F Sbjct: 353 NVDLDAQLYQGGF 365 >UniRef50_A4GJC0 Exodeoxyribonuclease I n=1 Tax=uncultured marine bacterium EB0_49D07 RepID=A4GJC0_9BACT Length = 469 Score = 80.9 bits (198), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 75/311 (24%), Positives = 138/311 (44%), Gaps = 31/311 (9%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 S +F+D ET G + Q +I+T+ ++ E + C P +P P A+ Sbjct: 5 SNLIFYDTETTGLLKDFSQILQCGSIQTNRSLEILHEQNL-GCAPLPWAIPYPMAM---- 59 Query: 69 ITPQEARAKGENEAAFAA-----RIHSLFTVPKTCI-LGYNNVRFDDEVTRNIFYRNFYD 122 +T ++ N + + R +T+ + + + +N + +D+E+ R FY N ++ Sbjct: 60 VTNKKTNLFHSNVSHYELMRDLNRQWRQWTIDEPAVFITFNGMAYDEELVRRQFYWNLFE 119 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEH--LTKANGIEHSNA 180 Y + + N R D+L +M A P+ +N P D G P L+ + +ANGIE +A Sbjct: 120 SYLTN-TNGNGRLDILLMMNNVAAFSPDVLNIPLFDGG-PGISLKQADIAEANGIEIGDA 177 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 HDA+AD I + + + ++P L D+ + K + A ++ P L V +R Sbjct: 178 HDAIADCKLMIGLLEKINAKKPELIDFFLSISTKPGIQAAVEHPGFLALGEV------FR 231 Query: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 + + N ++ DL+ + + E+D+ + +Y+ G + P K Sbjct: 232 REIFKYPVVPCGSKAPNDLMFFDLSFEPEEIFEMDT----QEIYSLVQKPGKSG--PFKK 285 Query: 301 VHINK----CP 307 INK CP Sbjct: 286 YGINKTIPVCP 296 >UniRef50_B6BR92 Exodeoxyribonuclease I n=1 Tax=Candidatus Pelagibacter sp. HTCC7211 RepID=B6BR92_9RICK Length = 481 Score = 79.3 bits (194), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 74/299 (24%), Positives = 139/299 (46%), Gaps = 41/299 (13%) Query: 100 LGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDD 159 LGY+++ FDDEV R F+++ PY + N R D L++++A +A+ + + N Sbjct: 92 LGYSSINFDDEVIRKEFFKSLRKPYLTN-TEGNVRHDALNIVKAAFAIDDDILKTELNAK 150 Query: 160 GLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLF-DYLFTHRNKHKLM 218 G S +LE L + NG E + AH A+ D T+ + L+K +QP ++ +YL T + Sbjct: 151 GNKSMKLESLARLNGFESAGAHSALFDTELTVKVLDLIKKKQPDIWTEYLKTSSK----V 206 Query: 219 ALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL----AWHPENRNAVIMVDLAGDISPLLEL 274 + ++ + + ++ ++ F + APL HP + + VDL DI + +L Sbjct: 207 VVENLIKQENIITLNEYFYG-KSYLYLCAPLHPNFCSHPVYKWGQV-VDLKADIEAIQKL 264 Query: 275 DSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQA-------------NTLRPEDAD 321 + + L++ + + L + V NK P++ ++L + A+ Sbjct: 265 NYEDLKKEMKKSPKFL--------RTVKSNKAPIILDKSFALKVDPYKKLDSSLINKRAE 316 Query: 322 RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAM 380 + N + D ILRE + EK+ + E P +++ Y+G F+ A A+ Sbjct: 317 LVKTNEKFSKDISNILREAAE--EKIET--SSQEDIEPEESI----YSGGFTSAKDQAL 367 >UniRef50_Q4FND4 Exodeoxyribonuclease I n=2 Tax=Candidatus Pelagibacter ubique RepID=Q4FND4_PELUB Length = 475 Score = 78.6 bits (192), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 75/279 (26%), Positives = 118/279 (42%), Gaps = 38/279 (13%) Query: 49 FYCKPADDYLPQPGAVLITGITPQEARAKG---------ENEAAFAARIHSLFTVPKTCI 99 F C+ + +PQ A LI T + KG + EA F ++F Sbjct: 40 FRCRLPEGEVPQAMA-LIVNKTSVDLLTKGNLSHYQMLSQLEATFKKWSPAMF------- 91 Query: 100 LGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDD 159 +G++N+ FDDE+ RN F+R PY + N R D L+++R +A+ + N Sbjct: 92 MGWSNIGFDDEMIRNEFFRGIRYPYITN-ATPNKRHDGLNIVRGAHAVDESVVKTEINAK 150 Query: 160 GLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMA 219 G +LE L + NG E S AH A+ D T+ + L+K QP+ +D NK Sbjct: 151 GNAVMKLESLARMNGFESSGAHSALFDAELTVKVLGLIKKNQPQTWDTFLRTANKSDTET 210 Query: 220 LIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIM-----VDLAGDISPLLEL 274 + +M L FG + VAPL HP++ I DL D PL ++ Sbjct: 211 IFKTEKMFTLAEYH--FG--KNYRFVVAPL--HPKHCIHPIYQWGQAFDLKIDPIPLFDM 264 Query: 275 DSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQAN 313 L+ + K ++ + NK P++ A+ Sbjct: 265 SISELKSAIKKLKF---------LRTIRSNKAPIILDAS 294 >UniRef50_UPI000169825E exonuclease I n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI000169825E Length = 79 Score = 76.6 bits (187), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 35/53 (66%), Positives = 41/53 (77%) Query: 140 VMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIA 192 ++R +ALRPEGI WP + G PSFRLE LT ANGI H AHDA++DVYATIA Sbjct: 1 MVRLTHALRPEGIEWPSDAAGRPSFRLELLTAANGIAHQAAHDALSDVYATIA 53 >UniRef50_UPI0001698261 Exodeoxyribonuclease I n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698261 Length = 142 Score = 67.0 bits (162), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 45/118 (38%), Positives = 64/118 (54%), Gaps = 7/118 (5%) Query: 357 FTPSDNVDAQLYNG-FFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNF 415 F P + D LY+G FFS+ DR M+ + ET L L F D R+ ++LF YRARN+ Sbjct: 14 FEPQTDPDLSLYSGPFFSEDDRRRMQQIRETPVDQLAGLHFAFDDARLPEMLFRYRARNW 73 Query: 416 PGTLDYAEQQRWLEHRR-QVFTPEF-----LQGYADELQMLVQQYADDKEKVALLKAL 467 P TL+ E+QRW E+R+ ++F + L Y +L +L E+ ALL L Sbjct: 74 PETLNETERQRWDEYRQTRLFDADGGGAIQLDEYLAQLDLLAADEGLSAERRALLPKL 131 >UniRef50_UPI000169825F exonuclease I n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI000169825F Length = 76 Score = 53.5 bits (127), Expect = 1e-05, Method: Composition-based stats. Identities = 23/45 (51%), Positives = 34/45 (75%), Gaps = 1/45 (2%) Query: 193 MAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKP-LVHVSGMF 236 +A+L+K RQPRL+ YL +HRNKH+L L+++ P L+HVS M+ Sbjct: 12 LARLIKQRQPRLYGYLLSHRNKHQLRDLLNLKATPPILLHVSSMY 56 >UniRef50_UPI0001698260 exonuclease I n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698260 Length = 60 Score = 52.0 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 24/47 (51%), Positives = 32/47 (68%), Gaps = 1/47 (2%) Query: 270 PLLELDSDTLRERLYTAKTDLGDNAA-VPVKLVHINKCPVLAQANTL 315 PLLELD + + +RL+T DL + +P+K VH+NKCPVL NTL Sbjct: 2 PLLELDDEQIHQRLFTPTADLPEGVERIPLKTVHLNKCPVLVPTNTL 48 >UniRef50_A4V7F6 Putative exodeoxyribonuclease n=1 Tax=Pseudomonas fluorescens SBW25 RepID=A4V7F6_PSEFS Length = 465 Score = 51.2 bits (121), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 77/345 (22%), Positives = 133/345 (38%), Gaps = 31/345 (8%) Query: 77 KGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRW- 135 G +E A +H FT P +G N D R+ FYRN P+ NS + Sbjct: 68 SGHSELECARTVHRHFTRPNCLHIGLGNTTRVDPFLRSTFYRNLL-PFPCIGLPGNSYYL 126 Query: 136 DLLDVMRACYALRPEGINWPENDDGLPSFRLEHLT--KANGIEHSNA---HDAMADVYAT 190 DL ++RA LRP+ W ++ D + H AN + A D +AD +A+ Sbjct: 127 DLETMLRAINILRPDEYPWADSPDPTNTQSFHHFLMWGANVSGENRAVRLRDLLADTHAS 186 Query: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALI--------DVPQMKPLVHVSGMFGAWRGN 242 P+L + H + + + + D+ P+ V A +G Sbjct: 187 C----------PKLVGHALKHSSLQSIKSALGLEQGEVSDLESATPVYLVHQSLQAPKGF 236 Query: 243 TSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVH 302 + P+ + + + DL DIS L + + + + N P+ + Sbjct: 237 ILGL-PVGVDITYPDILYVADLESDISQLCNPAITSYQSFVRNPSS----NPNGPLVRIS 291 Query: 303 INKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDN 362 +++ P A + +RP DA RL I+ + LR + ++ PSD Sbjct: 292 LSRFPFCAPLSAIRPADAARLSIDIGLVKRRIAQLRSATLLPSRLKETPVLHLSSQPSD- 350 Query: 363 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLL 407 V +++ G FS D+ M+ + + L + D RI +L+ Sbjct: 351 VFHRMWAGDFSPKDQVLMQELHQAPMGEWLNLAVGASDGRIYELV 395 >UniRef50_UPI0001743E3B exonuclease I n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI0001743E3B Length = 106 Score = 47.0 bits (110), Expect = 0.001, Method: Compositional matrix adjust. Identities = 24/96 (25%), Positives = 51/96 (53%), Gaps = 3/96 (3%) Query: 357 FTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFP 416 FTP + +++LY+GF ++ D+ ++V + + F D R++++ Y+ARN+P Sbjct: 10 FTPQADAESKLYDGFINNQDKLRSEVVRNLDQNQIKQYTPEFEDSRLKQIYPRYKARNYP 69 Query: 417 GTLDYAEQQRWLEHRRQVFT---PEFLQGYADELQM 449 L E+ + E+R+ P FL+ ++ ++ Sbjct: 70 NALSSDERIEYDEYRKNRLNRQLPGFLKDLTEQSKI 105 >UniRef50_UPI00017434A8 hypothetical protein cdivTM_22527 n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI00017434A8 Length = 50 Score = 47.0 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/41 (48%), Positives = 28/41 (68%) Query: 169 LTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLF 209 + K N +EH+ AHDA++DV A IA+ KL+ RLF+YL Sbjct: 2 IIKINNLEHTKAHDALSDVEALIAVTKLIAKTNNRLFNYLL 42 >UniRef50_A5I1F6 Helicase, UvrD/REP/exonuclease family protein n=10 Tax=Clostridium RepID=A5I1F6_CLOBH Length = 855 Score = 46.2 bits (108), Expect = 0.003, Method: Compositional matrix adjust. Identities = 54/241 (22%), Positives = 97/241 (40%), Gaps = 35/241 (14%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKP---ADDY 57 ++ G + D E+ G + D Q A I+ +++ VI + F D Y Sbjct: 485 LLTRGLDNENVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLTPKKFVGDSY 544 Query: 58 LPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFY 117 L + G + Q + GEN+ L + T I+G+N V FD + + Sbjct: 545 L-------VHGFSDQFLKENGENKKVVLKDF--LEFIKDTVIVGHN-VAFDISILNSELE 594 Query: 118 RNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEH 177 R + ++ + +D LD+ R Y L + +LE L+K E Sbjct: 595 RLSLEKASFK-----TYYDTLDIARRFYP-------------NLTNHKLETLSKLFNTET 636 Query: 178 SNAHDAMADVYAT--IAMAKLVKTRQPRLFDYLFTHRNKHKLMALI--DVPQMKPLVHVS 233 ++HDAM D+ AT + MA L + +P + + + + K I ++ +K L ++ Sbjct: 637 KSSHDAMDDILATKDVLMAMLKEKVKPTIINRMVVYGKYIKKFQPIYKEITNLKKLTYIK 696 Query: 234 G 234 Sbjct: 697 N 697 >UniRef50_A2SRZ3 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Methanocorpusculum labreanum Z RepID=A2SRZ3_METLZ Length = 228 Score = 45.8 bits (107), Expect = 0.004, Method: Compositional matrix adjust. Identities = 50/207 (24%), Positives = 80/207 (38%), Gaps = 39/207 (18%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL----- 65 L D ET G +P +DR + AAI+ F+ G V D+Y+ P + Sbjct: 1 MLIVDTETTGLNPKIDRITELAAIK----FDKYGNKSVM-----DEYISLPNDICYPENV 51 Query: 66 --ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD- 122 +TGITP+ KG E A + P +L +N +FD + + R+ Y Sbjct: 52 QEMTGITPEILELKGHPEEEIAWMFAMMLKSPGRVLLVTHNAQFDLRFIQEMLSRHRYVF 111 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEH-SNAH 181 P W ++D + +P+ RL G++ N+H Sbjct: 112 PNGWG---------VIDTLTVFRDRKPQ------------PHRLSDAISYYGLDGVKNSH 150 Query: 182 DAMADVYATIAMAKLVKTRQPRLFDYL 208 A+ DV A A+ + Q L +Y+ Sbjct: 151 RAIDDVVALCAVFDAMCQEQNDLDEYI 177 >UniRef50_B4S7Q3 Exonuclease RNase T and DNA polymerase III n=1 Tax=Prosthecochloris aestuarii DSM 271 RepID=B4S7Q3_PROA2 Length = 189 Score = 44.3 bits (103), Expect = 0.009, Method: Compositional matrix adjust. Identities = 51/191 (26%), Positives = 76/191 (39%), Gaps = 21/191 (10%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAI-RTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 Q L+ D ET GT+PA Q AI D V+ E C P + P A+ Sbjct: 3 QHKKVLYCDVETTGTNPAKHGIIQIGAIIEVDG---VVVEECNLKCAPHEGAEISPDALA 59 Query: 66 ITGITPQEARAKGENEAAFAARIHSL------FTVPKTCILGYNNVRFDDEVTRNIFYRN 119 I+G E ++ + A+ H L + C N+ FD + ++R+ Sbjct: 60 ISGTERSELESRMTSHEAYTQFRHFLSRHIEQYDREDKCYPAGYNIHFDLNFIQA-WFRH 118 Query: 120 FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSN 179 D Y W +LD + + I LP +RLE + + GI + Sbjct: 119 HGDKYGIG---SFINWRMLDPLPLLF------IKDFTRQITLPDYRLETVCRHFGIA-LH 168 Query: 180 AHDAMADVYAT 190 AHDAM+D+ AT Sbjct: 169 AHDAMSDIRAT 179 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P04995 Exodeoxyribonuclease I n=282 Tax=Bacteria RepID=... 685 0.0 UniRef50_B0BNV2 Exonuclease I n=17 Tax=Gammaproteobacteria RepID... 638 0.0 UniRef50_Q483M2 Exodeoxyribonuclease I n=21 Tax=Gammaproteobacte... 614 e-174 UniRef50_Q1QT40 Exodeoxyribonuclease I subunit C n=10 Tax=Proteo... 591 e-167 UniRef50_C6XFI1 Exonuclease I n=1 Tax=Candidatus Liberibacter as... 591 e-167 UniRef50_C1DSN1 Exodeoxyribonuclease I n=1 Tax=Azotobacter vinel... 585 e-165 UniRef50_A6VXX3 Exodeoxyribonuclease I n=4 Tax=Oceanospirillales... 584 e-165 UniRef50_Q605A2 Exodeoxyribonuclease I n=1 Tax=Methylococcus cap... 580 e-164 UniRef50_Q4K7B4 Exodeoxyribonuclease I n=25 Tax=Pseudomonas RepI... 580 e-164 UniRef50_Q21I25 Exodeoxyribonuclease I subunit C n=2 Tax=Gammapr... 577 e-163 UniRef50_A3WL65 Exonuclease I n=2 Tax=Idiomarina RepID=A3WL65_9GAMM 575 e-162 UniRef50_Q0AEW3 Exodeoxyribonuclease I subunit C n=2 Tax=Nitroso... 572 e-162 UniRef50_B3PLL7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacter... 572 e-161 UniRef50_D2UDX2 Putative exodeoxyribonucleaseIprotein n=1 Tax=Xa... 561 e-158 UniRef50_Q2P315 Exodeoxyribonuclease I n=17 Tax=Xanthomonadaceae... 558 e-157 UniRef50_Q8K923 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidico... 557 e-157 UniRef50_A4ADV7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacter... 548 e-154 UniRef50_Q21WQ6 Exodeoxyribonuclease I subunit C n=24 Tax=cellul... 546 e-154 UniRef50_B8KPJ8 Exodeoxyribonuclease I n=1 Tax=gamma proteobacte... 537 e-151 UniRef50_A0Z9I3 Exonuclease n=1 Tax=marine gamma proteobacterium... 534 e-150 UniRef50_B4SPA5 Exodeoxyribonuclease I n=3 Tax=Stenotrophomonas ... 531 e-149 UniRef50_A4BJV3 Putative exodeoxyribonuclease i protein n=1 Tax=... 525 e-147 UniRef50_P57620 Exodeoxyribonuclease I n=2 Tax=Buchnera aphidico... 516 e-145 UniRef50_A5KSP8 Exodeoxyribonuclease I n=2 Tax=candidate divisio... 503 e-141 UniRef50_Q89A43 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidico... 502 e-141 UniRef50_UPI0000E0E98F exodeoxyribonuclease I n=1 Tax=Rhodobacte... 499 e-139 UniRef50_Q056Y2 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidico... 486 e-135 UniRef50_A5CVQ8 Exodeoxyribonuclease I n=4 Tax=Gammaproteobacter... 481 e-134 UniRef50_Q7VQX2 Exodeoxyribonuclease I n=2 Tax=Candidatus Blochm... 480 e-134 UniRef50_D0KZN4 Exodeoxyribonuclease I n=1 Tax=Halothiobacillus ... 475 e-132 UniRef50_B8KX06 Exonuclease I n=1 Tax=gamma proteobacterium NOR5... 438 e-121 UniRef50_C0QKN8 SbcB n=1 Tax=Desulfobacterium autotrophicum HRM2... 392 e-107 UniRef50_B9NSM4 Exodeoxyribonuclease I n=1 Tax=Rhodobacteraceae ... 370 e-101 UniRef50_B5K7E4 Exodeoxyribonuclease I n=3 Tax=Rhodobacteraceae ... 369 e-100 UniRef50_A3XEM3 Exonuclease I n=3 Tax=Rhodobacteraceae RepID=A3X... 364 4e-99 UniRef50_B6J811 Exodeoxyribonuclease I n=7 Tax=Gammaproteobacter... 340 8e-92 UniRef50_D0RRC0 Exodeoxyribonuclease I n=1 Tax=alpha proteobacte... 340 8e-92 UniRef50_Q07NS2 Exodeoxyribonuclease I subunit C n=5 Tax=Alphapr... 326 1e-87 UniRef50_B4WCZ9 Exonuclease family n=1 Tax=Brevundimonas sp. BAL... 322 2e-86 UniRef50_C0B120 Putative uncharacterized protein n=2 Tax=Enterob... 316 8e-85 UniRef50_A1ZTJ0 Exodeoxyribonuclease I, putative n=1 Tax=Microsc... 309 2e-82 UniRef50_A2R5F8 Remark: it is assumed (Fragment) n=1 Tax=Aspergi... 307 5e-82 UniRef50_A4IYM7 Exonuclease n=19 Tax=Francisella RepID=A4IYM7_FRATW 305 2e-81 UniRef50_A4GJC0 Exodeoxyribonuclease I n=1 Tax=uncultured marine... 286 1e-75 UniRef50_UPI0001911F1B exonuclease I n=1 Tax=Salmonella enterica... 280 6e-74 UniRef50_A4V7F6 Putative exodeoxyribonuclease n=1 Tax=Pseudomona... 278 3e-73 UniRef50_Q4FND4 Exodeoxyribonuclease I n=2 Tax=Candidatus Pelagi... 262 3e-68 UniRef50_B6BR92 Exodeoxyribonuclease I n=1 Tax=Candidatus Pelagi... 258 3e-67 UniRef50_C5B4J5 Putative Exodeoxyribonuclease I n=1 Tax=Methylob... 204 5e-51 UniRef50_UPI0001698261 Exodeoxyribonuclease I n=1 Tax=Endoriftia... 130 1e-28 UniRef50_B8K5Y6 Exonuclease I n=1 Tax=Vibrio parahaemolyticus 16... 102 3e-20 UniRef50_UPI0001743E3B exonuclease I n=1 Tax=candidate division ... 100 9e-20 UniRef50_UPI000169825E exonuclease I n=1 Tax=Endoriftia persepho... 87 1e-15 UniRef50_UPI0001698260 exonuclease I n=1 Tax=Endoriftia persepho... 62 6e-08 UniRef50_UPI000169825F exonuclease I n=1 Tax=Endoriftia persepho... 59 4e-07 UniRef50_UPI00017434A8 hypothetical protein cdivTM_22527 n=1 Tax... 55 6e-06 Sequences not found previously or not previously below threshold: UniRef50_A2SRZ3 Exonuclease, RNase T and DNA polymerase III n=1 ... 70 2e-10 UniRef50_A6DIP6 Exonuclease n=1 Tax=Lentisphaera araneosa HTCC21... 70 2e-10 UniRef50_Q3B5G9 Exonuclease n=3 Tax=Chlorobium/Pelodictyon group... 70 3e-10 UniRef50_Q1DB51 Exonuclease n=3 Tax=Cystobacterineae RepID=Q1DB5... 67 2e-09 UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicu... 66 2e-09 UniRef50_D1BUD4 DNA polymerase III, epsilon subunit n=1 Tax=Xyla... 66 3e-09 UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermo... 65 5e-09 UniRef50_B9L7M7 Exonuclease n=3 Tax=cellular organisms RepID=B9L... 65 5e-09 UniRef50_A7B402 Putative uncharacterized protein n=1 Tax=Ruminoc... 65 7e-09 UniRef50_Q0SVV0 Helicase/exonuclease n=12 Tax=Clostridium RepID=... 65 8e-09 UniRef50_A5I1F6 Helicase, UvrD/REP/exonuclease family protein n=... 64 1e-08 UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit ... 63 2e-08 UniRef50_C8WA42 DNA polymerase III, epsilon subunit n=1 Tax=Atop... 63 2e-08 UniRef50_UPI0001BC4EA4 exonuclease n=4 Tax=Fusobacterium RepID=U... 63 3e-08 UniRef50_A9NGM6 DNA polymerase III, epsilon subunit n=1 Tax=Acho... 63 3e-08 UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Vict... 62 4e-08 UniRef50_C7G6P2 DNA polymerase III PolC-type n=1 Tax=Roseburia i... 62 7e-08 UniRef50_C0ECE2 Putative uncharacterized protein n=1 Tax=Clostri... 61 8e-08 UniRef50_Q03C57 3'-5' exonuclease and CRISPR-associated protein ... 61 8e-08 UniRef50_UPI0000D537B4 Exodeoxyribonuclease I n=1 Tax=Psychrofle... 61 1e-07 UniRef50_C9KN36 Helicase, UvrD/REP/exonuclease family protein n=... 61 1e-07 UniRef50_B4S7Q3 Exonuclease RNase T and DNA polymerase III n=1 T... 61 1e-07 UniRef50_Q6KIN3 DNA polymerase III alpha subunit n=1 Tax=Mycopla... 60 1e-07 UniRef50_UPI0001693F5B Exonuclease RNase T and DNA polymerase II... 60 2e-07 UniRef50_B4SAW0 Exonuclease RNase T and DNA polymerase III n=2 T... 60 2e-07 UniRef50_D2RJV7 DNA polymerase III, epsilon subunit n=1 Tax=Acid... 60 2e-07 UniRef50_C8P6J0 Putative uncharacterized protein n=1 Tax=Lactoba... 60 2e-07 UniRef50_C7H6D8 DNA polymerase III, alpha subunit n=4 Tax=Clostr... 60 2e-07 UniRef50_A1ZKT0 Exonuclease n=1 Tax=Microscilla marina ATCC 2313... 60 2e-07 UniRef50_C2KP37 DNA polymerase III epsilon subunit n=3 Tax=Mobil... 59 3e-07 UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit... 59 4e-07 UniRef50_C7X7A5 Exonuclease n=4 Tax=Bacteroidales RepID=C7X7A5_9... 59 4e-07 UniRef50_Q67M39 DNA polymerase III-like protein n=1 Tax=Symbioba... 58 6e-07 UniRef50_A7BXL6 Exodeoxyribonuclease I n=1 Tax=Beggiatoa sp. PS ... 58 6e-07 UniRef50_B9XHY8 DNA-directed DNA polymerase n=1 Tax=bacterium El... 58 7e-07 UniRef50_A8UVH7 Putative uncharacterized protein n=1 Tax=Hydroge... 58 8e-07 UniRef50_Q9PQB4 DNA polymerase III polC-type n=17 Tax=Ureaplasma... 57 1e-06 UniRef50_Q2Q0H1 Putative DNA polymerase type III, exonuclease do... 57 1e-06 UniRef50_C9ZG17 Putative DNA polymerase III, epsilon chain (EC 2... 57 1e-06 UniRef50_D1R5I0 Putative uncharacterized protein n=1 Tax=Parachl... 57 1e-06 UniRef50_B0B7H7 DNA polymerase III, epsilon chain n=13 Tax=Chlam... 57 1e-06 UniRef50_C1FD33 Exonuclease and DNA helicase n=3 Tax=cellular or... 57 2e-06 UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamyd... 57 2e-06 UniRef50_B8FZZ1 DnaQ family exonuclease/DinG family helicase n=2... 57 2e-06 UniRef50_B9CLN3 Putative exonuclease, RNase T and DNA polymerase... 57 2e-06 UniRef50_C3RQT5 DNA polymerase III subunit epsilon n=1 Tax=Molli... 56 3e-06 UniRef50_A5IXK4 DNA polymerase III alpha subunit n=1 Tax=Mycopla... 56 3e-06 UniRef50_A5FKC9 DNA polymerase III, alpha subunit n=26 Tax=cellu... 56 3e-06 UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive... 56 4e-06 UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7... 55 4e-06 UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburi... 55 4e-06 UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncult... 55 5e-06 UniRef50_B5ZV55 DNA polymerase III, epsilon subunit n=23 Tax=Alp... 55 5e-06 UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit ... 55 6e-06 UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminoc... 55 6e-06 UniRef50_C8SCL6 DNA polymerase III, epsilon subunit n=1 Tax=Ferr... 55 7e-06 UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidob... 55 8e-06 UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hy... 55 9e-06 UniRef50_D0LN23 Exonuclease RNase T and DNA polymerase III n=7 T... 54 9e-06 UniRef50_P96171 DNA for Na+/glucose symporter, n=1 Tax=Vibrio pa... 53 2e-05 UniRef50_C9PT90 Putative uncharacterized protein n=1 Tax=Prevote... 53 2e-05 UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Para... 53 2e-05 UniRef50_A5UUT9 DNA polymerase III, epsilon subunit n=4 Tax=Chlo... 53 2e-05 UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyc... 53 2e-05 UniRef50_C7TCP7 DNA helicase n=8 Tax=Lactobacillus RepID=C7TCP7_... 53 2e-05 UniRef50_Q0JYK3 Putative exonuclease n=1 Tax=Ralstonia eutropha ... 53 2e-05 UniRef50_A8EU91 DNA polymerase III, epsilon subunit n=5 Tax=Epsi... 53 2e-05 UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:Dna... 53 3e-05 UniRef50_B3T077 Putative exonuclease n=1 Tax=uncultured marine m... 53 3e-05 UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit ... 53 3e-05 UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax... 53 3e-05 UniRef50_C5F3P4 DNA polymerase III n=1 Tax=Lactobacillus paracas... 53 3e-05 UniRef50_C0DYM7 Putative uncharacterized protein n=1 Tax=Eikenel... 53 3e-05 UniRef50_Q1J224 Exonuclease domain in DNA-polymerase alpha and e... 52 3e-05 UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, pu... 52 4e-05 UniRef50_C0GGY8 Exonuclease RNase T and DNA polymerase III n=1 T... 52 4e-05 UniRef50_B3PN84 DNA polymerase III subunit alpha n=2 Tax=Mycopla... 52 4e-05 UniRef50_A8L7F0 Exonuclease RNase T and DNA polymerase III n=1 T... 52 4e-05 UniRef50_UPI0001B52926 exonuclease, RNase T and DNA polymerase I... 52 4e-05 UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Ther... 52 4e-05 UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia Re... 52 4e-05 UniRef50_P47277 DNA polymerase III polC-type n=2 Tax=Mycoplasma ... 52 5e-05 UniRef50_Q83YZ1 DNA polymerase III alpha subunit n=1 Tax=Peanut ... 52 6e-05 UniRef50_D1W6A9 UvrD/REP helicase n=3 Tax=Prevotella RepID=D1W6A... 52 6e-05 UniRef50_C9LHX7 Exonuclease n=1 Tax=Prevotella tannerae ATCC 512... 52 6e-05 UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Para... 52 6e-05 UniRef50_D1PV56 DNA-directed DNA polymerase III epsilon subunit ... 52 7e-05 UniRef50_Q041D1 DNA polymerase III, alpha subunit (Gram-positive... 51 8e-05 UniRef50_Q2FLJ5 Exonuclease n=1 Tax=Methanospirillum hungatei JF... 51 8e-05 UniRef50_B8L493 Exonuclease n=1 Tax=Stenotrophomonas sp. SKA14 R... 51 8e-05 UniRef50_Q38X67 Putative ATP-dependent helicase, DinG family n=1... 51 8e-05 UniRef50_Q9Y3B8 Oligoribonuclease, mitochondrial n=17 Tax=Eutele... 51 8e-05 UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=... 51 9e-05 UniRef50_C9RIR1 DNA polymerase III, epsilon subunit n=1 Tax=Fibr... 51 9e-05 UniRef50_C2BET5 3'-5' exonuclease and CRISPR-associated Cas2 fam... 51 9e-05 UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, pu... 51 9e-05 UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxid... 51 1e-04 UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Trepo... 51 1e-04 UniRef50_A8RD59 Putative uncharacterized protein n=2 Tax=unclass... 51 1e-04 UniRef50_C0W0V1 DNA polymerase III subunit epsilon n=1 Tax=Actin... 51 1e-04 UniRef50_B8GAH5 DNA polymerase III, epsilon subunit n=1 Tax=Chlo... 51 1e-04 UniRef50_D0WP21 Putative DNA polymerase III epsilon subunit n=1 ... 51 1e-04 UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA poly... 51 1e-04 UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Dein... 51 1e-04 UniRef50_A6VD64 Oligoribonuclease n=25 Tax=Proteobacteria RepID=... 50 1e-04 UniRef50_A5KRR8 Oligoribonuclease n=2 Tax=candidate division TM7... 50 1e-04 UniRef50_B5YGV6 DNA polymerase III alpha subunit n=1 Tax=Thermod... 50 2e-04 UniRef50_B7GHT3 DNA polymerase III, epsilon subunit and Rad3-rel... 50 2e-04 UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependen... 50 2e-04 UniRef50_UPI0000D55BE7 PREDICTED: similar to three prime repair ... 50 2e-04 UniRef50_C9PFC2 DNA polymerase III epsilon subunit n=2 Tax=Vibri... 50 2e-04 UniRef50_D1PSL1 Putative DNA polymerase III, epsilon subunit n=1... 50 2e-04 UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogac... 50 2e-04 UniRef50_Q21VB4 DNA polymerase III, epsilon subunit n=7 Tax=Beta... 50 2e-04 UniRef50_B9F7W0 Putative uncharacterized protein n=3 Tax=Poaceae... 50 2e-04 UniRef50_A8LH88 Exonuclease RNase T and DNA polymerase III n=2 T... 50 2e-04 UniRef50_C0A8I6 DNA-directed DNA polymerase n=1 Tax=Opitutaceae ... 50 2e-04 UniRef50_D1VLC1 DNA polymerase III, epsilon subunit n=1 Tax=Fran... 50 2e-04 UniRef50_Q10MN9 Os03g0301400 protein n=4 Tax=Poaceae RepID=Q10MN... 50 2e-04 UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit... 50 2e-04 UniRef50_B1C737 Putative uncharacterized protein n=1 Tax=Anaerof... 50 2e-04 UniRef50_D1N0X4 DNA polymerase III, epsilon subunit n=1 Tax=Vict... 50 3e-04 UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4... 50 3e-04 UniRef50_Q83GA7 Oligoribonuclease n=2 Tax=Tropheryma whipplei Re... 49 3e-04 UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=1... 49 3e-04 UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlam... 49 3e-04 UniRef50_A4HVE4 Mitochondrial DNA polymerase I protein B, putati... 49 3e-04 UniRef50_Q7PD30 AGAP012804-PA n=10 Tax=Endopterygota RepID=Q7PD3... 49 3e-04 UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaero... 49 3e-04 UniRef50_A4FXS5 Exonuclease, RNase T and DNA polymerase III n=5 ... 49 3e-04 UniRef50_B7GKX3 Exonuclease n=2 Tax=Bacillaceae RepID=B7GKX3_ANOFW 49 4e-04 UniRef50_Q68BL2 DNA helicase RecG n=2 Tax=cellular organisms Rep... 49 4e-04 UniRef50_C4FTI9 Putative uncharacterized protein n=1 Tax=Catonel... 49 4e-04 UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae R... 49 4e-04 UniRef50_Q14JL3 Oligoribonuclease n=21 Tax=Gammaproteobacteria R... 49 4e-04 UniRef50_C2D7T6 3'-5' exonuclease and CRISPR-associated Cas2 fam... 49 5e-04 UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moor... 49 5e-04 UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibr... 48 5e-04 UniRef50_Q2S3Z9 Exonuclease, putative n=1 Tax=Salinibacter ruber... 48 5e-04 UniRef50_A9DMS8 DNA polymerase III, epsilon subunit n=1 Tax=Kord... 48 6e-04 UniRef50_Q31HZ4 Oligoribonuclease n=12 Tax=Gammaproteobacteria R... 48 6e-04 UniRef50_D2BLE9 ATP-dependent DNA helicase/DNA polymerase III, e... 48 6e-04 UniRef50_A3XHM4 DNA polymerase III, epsilon subunit n=1 Tax=Leeu... 48 6e-04 UniRef50_B0KHB9 Exonuclease RNase T and DNA polymerase III n=3 T... 48 6e-04 UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicu... 48 7e-04 UniRef50_C1YUT4 Exonuclease, DNA polymerase III, epsilon subunit... 48 7e-04 UniRef50_Q5SK39 DNA polymerase III epsilon chain-like protein n=... 48 8e-04 UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepI... 48 8e-04 UniRef50_A9HX18 Putative exonuclease n=1 Tax=Bordetella petrii D... 48 8e-04 UniRef50_Q2KXB5 Putative exonuclease n=4 Tax=Bordetella RepID=Q2... 48 9e-04 UniRef50_B7V8D9 Probable nuclease n=6 Tax=Pseudomonas aeruginosa... 48 0.001 UniRef50_C7Q2F7 Exonuclease RNase T and DNA polymerase III n=1 T... 48 0.001 UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candida... 48 0.001 UniRef50_D1XX28 UvrD/REP helicase n=3 Tax=Prevotella RepID=D1XX2... 48 0.001 UniRef50_C4LJX7 Putative oligoribonuclease n=1 Tax=Corynebacteri... 48 0.001 UniRef50_UPI0001AEDE41 DNA polymerase III n=2 Tax=Streptomyces R... 47 0.001 UniRef50_Q04F80 DNA polymerase III, alpha subunit (Gram-positive... 47 0.001 UniRef50_C5WML0 Putative uncharacterized protein Sb01g037840 n=1... 47 0.001 UniRef50_C2BLZ4 DNA polymerase III subunit epsilon n=6 Tax=Coryn... 47 0.001 UniRef50_C7LWI5 DNA polymerase III, epsilon subunit n=2 Tax=Delt... 47 0.001 UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1... 47 0.001 UniRef50_Q8EUK5 DNA polymerase III subunit alpha n=1 Tax=Mycopla... 47 0.001 UniRef50_B0UN90 Exonuclease RNase T and DNA polymerase III n=3 T... 47 0.001 UniRef50_UPI00015B53D6 PREDICTED: similar to ENSANGP00000010833 ... 47 0.001 UniRef50_A4U2R7 DNA polymerase III, epsilon subunit n=1 Tax=Magn... 47 0.001 UniRef50_UPI000186E428 oligoribonuclease, putative n=1 Tax=Pedic... 47 0.002 UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 47 0.002 UniRef50_D1BPK1 UvrD/REP helicase n=3 Tax=Veillonella RepID=D1BP... 47 0.002 UniRef50_C4LI81 Putative uncharacterized protein n=1 Tax=Coryneb... 47 0.002 UniRef50_B1I518 DNA-directed DNA polymerase n=1 Tax=Candidatus D... 47 0.002 UniRef50_Q47TJ3 DNA polymerase III, epsilon subunit n=10 Tax=Act... 47 0.002 UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51... 47 0.002 UniRef50_C8X5R2 Exonuclease RNase T and DNA polymerase III n=1 T... 47 0.002 UniRef50_A0JYL8 DNA polymerase III, epsilon subunit n=8 Tax=Micr... 47 0.002 UniRef50_Q746C7 Putative uncharacterized protein n=2 Tax=Thermus... 47 0.002 UniRef50_A4NXF4 Oligoribonuclease n=1 Tax=Haemophilus influenzae... 47 0.002 UniRef50_D0LL62 Exonuclease RNase T and DNA polymerase III n=1 T... 47 0.002 UniRef50_Q2SSE0 DNA polymerase III, alpha subunit, Gram-positive... 47 0.002 UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Haloth... 47 0.002 UniRef50_Q4UVB0 Oligoribonuclease n=29 Tax=Bacteria RepID=ORN_XANC8 46 0.002 UniRef50_B2A7J4 DNA polymerase III, epsilon subunit n=1 Tax=Natr... 46 0.003 UniRef50_A7A526 Putative uncharacterized protein n=1 Tax=Bifidob... 46 0.003 UniRef50_Q47VZ4 Oligoribonuclease n=73 Tax=cellular organisms Re... 46 0.003 UniRef50_UPI000185C525 DNA polymerase III, epsilon subunit n=1 T... 46 0.003 UniRef50_A3D8L9 Exonuclease, RNase T and DNA polymerase III n=4 ... 46 0.003 UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacte... 46 0.003 UniRef50_C4VNH6 DNA polymerase III n=4 Tax=Lactobacillus jenseni... 46 0.003 UniRef50_UPI00019768DE DNA polymerase III alpha subunit n=1 Tax=... 46 0.003 UniRef50_C0YII7 DNA-directed DNA polymerase n=1 Tax=Chryseobacte... 46 0.003 UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacte... 46 0.003 UniRef50_A7RWU1 Predicted protein n=2 Tax=Nematostella vectensis... 46 0.003 UniRef50_D1B3F1 DNA polymerase III, epsilon subunit n=1 Tax=Sulf... 46 0.003 UniRef50_A5FH18 DNA polymerase III, epsilon subunit n=2 Tax=Flav... 46 0.003 UniRef50_A1VJH5 Exonuclease, RNase T and DNA polymerase III n=8 ... 46 0.004 >UniRef50_P04995 Exodeoxyribonuclease I n=282 Tax=Bacteria RepID=EX1_ECOLI Length = 475 Score = 685 bits (1768), Expect = 0.0, Method: Composition-based stats. Identities = 467/467 (100%), Positives = 467/467 (100%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 >UniRef50_B0BNV2 Exonuclease I n=17 Tax=Gammaproteobacteria RepID=B0BNV2_ACTPJ Length = 514 Score = 638 bits (1646), Expect = 0.0, Method: Composition-based stats. Identities = 260/465 (55%), Positives = 344/465 (73%), Gaps = 3/465 (0%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 + TF F+DYE+FG PALDRPAQFA IRTDS+FN+IGEP +FYCK DYLP P AV Sbjct: 1 MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAV 60 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 ++TGITPQ+ A+G E FAARIH+ F+ P TCILGYNN+R+DDE+TR F+RNF+DPY Sbjct: 61 MVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPY 120 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 +SW++ NSRWDLLD++RACYALRP+GI W +++G+P+F+LE+LTKANGI H NAHDAM Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGMPNFKLENLTKANGIAHENAHDAM 180 Query: 185 ADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTS 244 ADVYATIAMAKL+K +QP+LF + F +R K ++ +ID +M PLVHVSGMFG R NT+ Sbjct: 181 ADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA 240 Query: 245 WVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA-AVPVKLVHI 303 W+AP+AWHP N+N V+ DL+GD+S LL ++ LR RLYT K +L + VP+K VHI Sbjct: 241 WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHI 300 Query: 304 NKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQV-REKVVAIFAEAEPFTPSDN 362 N+CP++A A L PE+A RLGI+R+ CL+NLK+L+ N + REKV IF E F PS N Sbjct: 301 NRCPIIAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSAN 360 Query: 363 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 422 V+ LY+GFFS AD+ M I+ P+ L + F D+R+E LLF+YRAR++P TL A Sbjct: 361 VETTLYDGFFSPADKNNMAILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRA 420 Query: 423 EQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 EQ +W ++ Q + +Q +A+ + +L Q + D+ EKV LL+ L Sbjct: 421 EQIKWQKYCHQQIDAKSVQ-FAEAIDILFQIHHDNPEKVKLLENL 464 >UniRef50_Q483M2 Exodeoxyribonuclease I n=21 Tax=Gammaproteobacteria RepID=Q483M2_COLP3 Length = 487 Score = 614 bits (1583), Expect = e-174, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 332/475 (69%), Gaps = 10/475 (2%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 62 + +Q + L+HDYET+G +P D+P+QFA IRTD + N+IGEPE+FYC P DYLP P Sbjct: 7 QNNTEQPSILWHDYETWGINPKFDKPSQFAGIRTDLDLNIIGEPEMFYCTPPVDYLPHPE 66 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 A L+TGITPQ+A+ +G +EA FAARIH+LFT P TC+ GYN++RFDDEVTR + YRNFYD Sbjct: 67 ACLVTGITPQKAQREGLSEAEFAARIHTLFTQPNTCVAGYNSIRFDDEVTRYLLYRNFYD 126 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWP---ENDDGLPSFRLEHLTKANGIEHSN 179 PYA WQ+ NSRWD++D++RACYALRPEGINWP + + + SFRLE LT AN I H Sbjct: 127 PYAREWQNGNSRWDIIDMVRACYALRPEGINWPTVKRDGEEVISFRLELLTAANDISHEA 186 Query: 180 AHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAW 239 AHDAM+DVYATIAMAKL+K +QP+L+D++F +NK+++ LI+ +M P+VH S + Sbjct: 187 AHDAMSDVYATIAMAKLIKEKQPKLYDFIFNLKNKNQVKDLINTAEMTPIVHTSSKVSSA 246 Query: 240 RGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDL-GDNAAVPV 298 G TSW AP+++HP N+NAVI VDLA DISPLL L S+ ++ RLYT DL D +PV Sbjct: 247 HGCTSWFAPVSYHPVNKNAVICVDLARDISPLLTLSSEEIKARLYTRYDDLAPDELPIPV 306 Query: 299 KLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFT 358 KL+H+NKCPV+A A TL PE+A+RL I R CLDNL +LR++ ++R+K+ +FA ++ Sbjct: 307 KLIHVNKCPVIAPAKTLLPENAERLAIPRDVCLDNLALLRKHAELRDKLSDVFATSDFDN 366 Query: 359 PSDNVDAQLYNG-FFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPG 417 + + LY G FFS +D+A M I+ P L F D+R+ LLF YRARN+P Sbjct: 367 DDVDAEQALYGGSFFSHSDKAQMDILRGLSPEQLANHPFQFQDERLSVLLFRYRARNYPY 426 Query: 418 TLDYAEQQRWLEHRRQVFTPE-----FLQGYADELQMLVQQYADDKEKVALLKAL 467 TL EQQ+W ++ + L + +++ L ++ DK K+++LKAL Sbjct: 427 TLSTEEQQKWQQYCQNKLQYGGKGILSLDEFMMKIENLAHEHETDKAKMSVLKAL 481 >UniRef50_Q1QT40 Exodeoxyribonuclease I subunit C n=10 Tax=Proteobacteria RepID=Q1QT40_CHRSD Length = 495 Score = 591 bits (1524), Expect = e-167, Method: Composition-based stats. Identities = 234/479 (48%), Positives = 308/479 (64%), Gaps = 18/479 (3%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 M GK + TFL+HDYETFG P DRPAQFAAIRTDS+FN +GEP FYCKPADD+LP P Sbjct: 1 MAQGKTEPTFLWHDYETFGADPRRDRPAQFAAIRTDSDFNPVGEPMTFYCKPADDFLPHP 60 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 A LITGITPQ AR +G E FAARIH+ +VP TC LGYN +RFDDEV+R++FYRNF Sbjct: 61 QACLITGITPQAARRRGLAEIEFAARIHAEMSVPGTCSLGYNTLRFDDEVSRHLFYRNFI 120 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 DPY+ WQ+ NSRWDL+DV+R +ALRP+GI WP +DG PSFRLE LT ANGIEH+ AH Sbjct: 121 DPYSREWQNGNSRWDLIDVVRTYHALRPDGIEWPTREDGAPSFRLEDLTAANGIEHAGAH 180 Query: 182 DAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG 241 DA+ADV ATI +A+L+K R +LF+YL R+K + ++D+ KP++HVS + A RG Sbjct: 181 DALADVRATIELARLLKARNAQLFEYLLKLRDKRTVARMLDIQARKPMLHVSRRYPASRG 240 Query: 242 NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA-AVPVKL 300 ++ V PLA HP N N VI+ DL+ D SPLL +++ +RER++ + +L + +P+K+ Sbjct: 241 CSALVVPLAEHPSNPNGVIVYDLSVDPSPLLSMEAAQIRERVFASADELAEGEARIPLKV 300 Query: 301 VHINKCPVLAQANTLRPEDA----------DRLGINRQHCLDNLKILRENPQVREKVVAI 350 +HINK PV+ A +L+ D RLG++ C + K L+ P V K + Sbjct: 301 IHINKSPVIMPAASLKDVDGPQRGEYGALVARLGLDMAACRRHWKQLQAAPDVAAKAAEV 360 Query: 351 FAEAEPFTPSDNVDAQLYN-GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFN 409 FAE P P + D LY+ GFFS ADR M+ E +L F D R+E++LF Sbjct: 361 FAEG-PGAPPSDPDLMLYSGGFFSPADRREMQRAREMPAWDLAEASFAFQDPRLEEMLFR 419 Query: 410 YRARNFPGTLDYAEQQRWLEHRRQVFTPE-----FLQGYADELQMLVQQYADDKEKVAL 463 RARN+P TL EQ +W +R L G+A E++ L Q DD ++ L Sbjct: 420 LRARNYPDTLSSEEQAQWEAYRWARMNDAEVASLTLTGFAREIERLNQVPLDDAQRQVL 478 >UniRef50_C6XFI1 Exonuclease I n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFI1_LIBAP Length = 471 Score = 591 bits (1523), Expect = e-167, Method: Composition-based stats. Identities = 241/457 (52%), Positives = 322/457 (70%), Gaps = 1/457 (0%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT Sbjct: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW + Sbjct: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Query: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190 NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT Sbjct: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 Query: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250 +A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A Sbjct: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 Query: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310 WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L Sbjct: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 Query: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNG 370 + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY+G Sbjct: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSS-SQDVDSQLYDG 363 Query: 371 FFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEH 430 FF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLEH Sbjct: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 Query: 431 RRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 R+++ T ++ Y ++LQ L +Y D+ K L+ AL Sbjct: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINAL 460 >UniRef50_C1DSN1 Exodeoxyribonuclease I n=1 Tax=Azotobacter vinelandii DJ RepID=C1DSN1_AZOVD Length = 476 Score = 585 bits (1507), Expect = e-165, Method: Composition-based stats. Identities = 225/466 (48%), Positives = 304/466 (65%), Gaps = 13/466 (2%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 S+ ++DYET G +P DRP Q A IRTD N IG P YC+PADD LP P A L+ Sbjct: 1 MTSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGAPLNLYCRPADDILPHPAACLV 60 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 TGITP+ +G EA F R+H+ +P TC GYN++RFDDE++R+ YRNF+DPYA Sbjct: 61 TGITPRLLAERGLCEAEFVTRLHAELALPGTCTAGYNSLRFDDEISRHALYRNFFDPYAR 120 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 WQ NSRWDL+D++R YALRPEGI+WP+ ++G S RLE LT ANGIEH AHDA+AD Sbjct: 121 EWQAGNSRWDLIDLLRTAYALRPEGIHWPQ-EEGRVSLRLERLTAANGIEHGQAHDALAD 179 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWV 246 V ATIA+A+L++ RQP+L+ YL+ R+K +++ I + ++PLVHVSG F A RG + V Sbjct: 180 VRATIALARLLRERQPKLYGYLYQLRSKQRVLDQIRL--LRPLVHVSGRFAAERGYLAVV 237 Query: 247 APLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA-AVPVKLVHINK 305 PLAWHP NRNA+I+ DL D SPLL+LD++ LR RLY + +L DN VP+KLVHIN+ Sbjct: 238 LPLAWHPSNRNALIVCDLQADPSPLLDLDAEILRRRLYMRREELADNESPVPLKLVHINR 297 Query: 306 CPVLAQANTLRPEDADRLGINRQHCLDNLKILRENP-QVREKVVAIFAEAEPFTPSDNVD 364 CPVLA + LR ED RL ++ C +++L Q +EK+ I+ E F S++ + Sbjct: 298 CPVLAPLSVLREEDIGRLRVDMAECQRRVELLCAAQGQWQEKLARIYMGDE-FPASEDPE 356 Query: 365 AQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQ 424 QLY GFF + DR + V EP +L + F D+R+ +LLF YRARNFP TL AE Sbjct: 357 QQLYGGFFGERDRRLCEQVRRAEPESLGRQNWGFDDERLPELLFRYRARNFPETLTAAEG 416 Query: 425 QRWLEHRRQVFT------PEFLQGYADELQMLVQQYADDKEKVALL 464 + W E R+ + P L + +L+ L+ Q AD++ + L+ Sbjct: 417 ECWQEFCRRRLSDAAWGAPCTLGDFNVQLEQLLAQ-ADEEHRPILV 461 >UniRef50_A6VXX3 Exodeoxyribonuclease I n=4 Tax=Oceanospirillales RepID=A6VXX3_MARMS Length = 484 Score = 584 bits (1505), Expect = e-165, Method: Composition-based stats. Identities = 201/471 (42%), Positives = 292/471 (61%), Gaps = 9/471 (1%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 ++F + D+ET GT PA DRP QFA IRTD +FN IGEP +FYC+ A+D LPQP A Sbjct: 3 SSGPTSFFWFDFETTGTDPARDRPMQFAGIRTDLDFNPIGEPIMFYCRLAEDVLPQPEAC 62 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 L+TGI+PQ+A +G EA F + + + P TC LGYN +RFDDEV R FYRNF DPY Sbjct: 63 LLTGISPQDANREGLCEAEFMQAVEAELSQPGTCALGYNTIRFDDEVVRYGFYRNFIDPY 122 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 WQ++ SRWD++D++R YA+RPEGI WP+N+DG S +LE LTKANGI H AHDA+ Sbjct: 123 TREWQNNCSRWDMIDLVRMTYAMRPEGIVWPKNEDGQVSMKLEALTKANGIAHEQAHDAL 182 Query: 185 ADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTS 244 +DVY TI +AKL++++QP+LF Y F R KH+L IDV ++KP +H+SGMFG + + Sbjct: 183 SDVYGTIEIAKLIRSKQPKLFAYYFKMRQKHELQQFIDVVRLKPFLHISGMFGQAKNYAA 242 Query: 245 WVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHIN 304 +V P+A HP N+N VI+ DL D PL++L + +R R++T + +LGD +P+K++H N Sbjct: 243 FVVPIAPHPTNKNGVIIFDLMADAQPLIDLSVEEIRHRVFTRQEELGDLERLPLKVIHYN 302 Query: 305 KCPVLAQANTLRPED-ADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNV 363 K P +A A L+ D RL ++ C NL I++ + + K+ +F + + + Sbjct: 303 KSPAVAPATFLKDVDVVKRLALDGSVCRHNLAIIKGHAGLAAKLSDVFMQEDRPIHK-DP 361 Query: 364 DAQLYN-GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 422 D LY+ GFFS DR M+ + T L L ++F D+R+ ++L Y RN+P L Sbjct: 362 DVMLYSGGFFSREDRVRMEKIRSTPANQLSELAMSFDDRRLPEMLMRYIGRNYPDQLSEQ 421 Query: 423 EQQRWLEHRRQVF------TPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 +Q W E+R+ ++ Y + L ++ Q + +L+ L Sbjct: 422 QQFEWEEYRQVRLLEKDGGGSINMEQYFERLNLIAQTPDLSPAEQVMLQDL 472 >UniRef50_Q605A2 Exodeoxyribonuclease I n=1 Tax=Methylococcus capsulatus RepID=Q605A2_METCA Length = 478 Score = 580 bits (1496), Expect = e-164, Method: Composition-based stats. Identities = 207/466 (44%), Positives = 276/466 (59%), Gaps = 8/466 (1%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 +F ++D ETFGT PA DR AQFA +RTD EFN IG P+V YC+P+DD +P P A L+TG Sbjct: 5 PSFYWYDLETFGTDPARDRIAQFAGLRTDLEFNPIGPPDVLYCRPSDDMVPYPDACLVTG 64 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 ITPQ A G E+AF A IH +F P TC+LGYN +RFDDE+ R+ FYRN YDPYA W Sbjct: 65 ITPQYAAELGVPESAFIATIHRIFMRPGTCVLGYNTLRFDDEMLRHAFYRNLYDPYAREW 124 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 + NSRWD++D+ R ALRP+GI WP + G P F+LE L ANGI H +AHDA++DV Sbjct: 125 KGGNSRWDVIDLARLTQALRPDGIEWPRDSLGSPVFKLERLAAANGIRHESAHDALSDVR 184 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 AT+A A+L+ RQPRLF + R K + L+ + +P++HVS F A R + V P Sbjct: 185 ATVAFARLIAERQPRLFQFALESRAKGAVERLLALGAWQPVLHVSEKFSASRHCIACVLP 244 Query: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDN-AAVPVKLVHINKCP 307 L HP VI+ DLA D + L +L D +R RL+T +L +P+K VH N+CP Sbjct: 245 LCRHPRIATRVIVFDLASDPAQLSDLSVDEIRRRLFTPSAELPAATGRLPLKGVHTNRCP 304 Query: 308 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQ-VREKVVAIFAEAEPFTPSDNVDAQ 366 V+ + LRP D +RLGI+ C + L+++ + + K+ A F F + + + Sbjct: 305 VVVPMSALRPADGERLGIDAVLCRRRARWLQDHAEDIIPKISAAFEVDASFEAASDPELM 364 Query: 367 LY-NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQ 425 LY GF DADR A+ V P L FVD R ++LLF +RARNFP TL+ E++ Sbjct: 365 LYRGGFIPDADRRALDQVHRLTPDQLAHYRPRFVDGRFDELLFRFRARNFPETLNAEERE 424 Query: 426 RWLEHRRQVF----TPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 RW RR L + + L Q D K A+L AL Sbjct: 425 RWTAFRRARLAGIGGGLSLAEFFSRIDRLRSQ-ESDAGKRAILDAL 469 >UniRef50_Q4K7B4 Exodeoxyribonuclease I n=25 Tax=Pseudomonas RepID=Q4K7B4_PSEF5 Length = 497 Score = 580 bits (1494), Expect = e-164, Method: Composition-based stats. Identities = 215/434 (49%), Positives = 283/434 (65%), Gaps = 6/434 (1%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 ++ ++DYET G +P DRP Q A IRTD N I EP YC+P+DD LP P A +ITG Sbjct: 24 TSLFWYDYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMACMITG 83 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 ITP +G EA F R+H P TC +GYN +RFDDE+TR YRNF+DPYA W Sbjct: 84 ITPGRLAEQGLGEADFMTRVHEQLARPGTCGVGYNTLRFDDEMTRYSLYRNFFDPYAREW 143 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 Q NSRWDL+DV+R YALRP+GI WPE + G S +LE LT ANGI+H AHDA++DV Sbjct: 144 QGGNSRWDLIDVVRTAYALRPQGIVWPE-EQGQVSLKLERLTAANGIDHGQAHDALSDVR 202 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 ATIA+A+LV+ +QPRL+D+LF R+K ++M + + ++P+VH+SG F A R V P Sbjct: 203 ATIALARLVRDKQPRLYDWLFQLRSKQRVMDQVRL--LQPMVHISGRFSAARHYIGVVLP 260 Query: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA-AVPVKLVHINKCP 307 LAWHP NRNA+I+ DL D LLELD++TLR+RLYT + DL + VP+KL+HIN+CP Sbjct: 261 LAWHPRNRNALIVCDLHLDPQGLLELDAETLRQRLYTRREDLLEGELPVPLKLIHINRCP 320 Query: 308 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQV-REKVVAIFAEAEPFTPSDNVDAQ 366 V+A + LR ED RL ++ + L E +V R+K+ I+ E F SD+ + Q Sbjct: 321 VVAPLSVLRSEDQQRLHLDMELYQRRAVALSEAQEVWRDKLSVIYGPDE-FAASDDPEQQ 379 Query: 367 LYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQR 426 LY+GF D DR + V E +P +L F D+R+ +LLF YRARNFP TL+ AEQ+R Sbjct: 380 LYDGFIGDRDRRLCEQVREADPLHLAQQQWPFDDERLPELLFRYRARNFPETLNKAEQER 439 Query: 427 WLEHRRQVFTPEFL 440 WL +Q L Sbjct: 440 WLVFCQQRLLDPQL 453 >UniRef50_Q21I25 Exodeoxyribonuclease I subunit C n=2 Tax=Gammaproteobacteria RepID=Q21I25_SACD2 Length = 485 Score = 577 bits (1487), Expect = e-163, Method: Composition-based stats. Identities = 206/469 (43%), Positives = 288/469 (61%), Gaps = 11/469 (2%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 Q TF +HDYET+G +PA+DRP+QFA +RTD + N+IGEP V YCKP +D P P A L+ Sbjct: 1 MQKTFYWHDYETWGANPAVDRPSQFAGVRTDMDLNIIGEPLVIYCKPPEDIWPNPEACLV 60 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 TG+TPQE AKG E F +IH P TC +GYN++RFDDEVTR YRN++DPY Sbjct: 61 TGLTPQETLAKGVTEREFIKQIHRELAKPGTCGVGYNSIRFDDEVTRYTLYRNYFDPYER 120 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 W++ NSRWD++D++R CYALRPEGI WP DG PSFRLE+LTK NGI H++AHDA +D Sbjct: 121 EWRNGNSRWDIIDMVRLCYALRPEGIEWPVV-DGKPSFRLENLTKVNGIVHASAHDAYSD 179 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWV 246 V ATI +A+LV+ +QP L++++ +R K + L+DV KP++H+S F + G + Sbjct: 180 VEATIKLARLVREKQPALYEHVVNNRGKREATKLLDVASKKPMLHISSKFSSENGCAGLI 239 Query: 247 APLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDN-AAVPVKLVHINK 305 APLA+HP N+NAVI+++L D PL +L +D +R R++TA DL + +PVKL+H+NK Sbjct: 240 APLAYHPVNKNAVIVINLNADPKPLFDLSADEIRARIFTATKDLPEGVERLPVKLIHLNK 299 Query: 306 CPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDA 365 CP+L L + RLGI++ C + L + + EK+ +FA E F S + + Sbjct: 300 CPILLTPKILDEQAQARLGIDKAQCEKHWSQL-QRMDITEKLQQVFATNE-FEGSLDPER 357 Query: 366 QLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQ 425 LY+GF D D+ M V + L + F DKR+ +L Y+ARNFP L +E+ Sbjct: 358 MLYDGFVGDTDKYVMADVRKANGAELSKHNFVFSDKRLNDMLLRYKARNFPDDLTDSERA 417 Query: 426 RWLEHRRQVFTPE-----FLQGYADELQMLVQ--QYADDKEKVALLKAL 467 W E Q L D+L + + D+ + K L Sbjct: 418 EWREFVSQRLKDGGDGVLSLSELNDKLVNIRAELEQQQDQSPEQIAKKL 466 >UniRef50_A3WL65 Exonuclease I n=2 Tax=Idiomarina RepID=A3WL65_9GAMM Length = 486 Score = 575 bits (1481), Expect = e-162, Method: Composition-based stats. Identities = 216/476 (45%), Positives = 303/476 (63%), Gaps = 9/476 (1%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 + + K Q TF +HDYET+G P +DRPAQFA +RT +F +G P Y +P D+LP Sbjct: 4 VPENNKNQPTFYWHDYETWGARPLIDRPAQFAGMRTTLDFQPVGRPLTIYAQPTPDFLPD 63 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 P AVLITGITPQ A +G NEA FA I + P T I+GYNN+RFDDEVTR++ YRNF Sbjct: 64 PEAVLITGITPQYALNQGVNEANFAQAIVQEMSQPNTIIIGYNNIRFDDEVTRSLCYRNF 123 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 YDPYA +WQ+ NSRWDL+DV+RACYALRPEGI+WPE++DG + RLE LT+AN I+H A Sbjct: 124 YDPYAHTWQNGNSRWDLIDVVRACYALRPEGIHWPEDEDGRVTLRLEKLTQANRIDHGQA 183 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 HDAM+DV ATIAMA+L+ +QP+L+ + HR+K+ LM LI+ Q+KPLVHVSG++GA Sbjct: 184 HDAMSDVRATIAMAQLLAEKQPKLWQFALQHRHKNDLMNLINWQQIKPLVHVSGLYGADN 243 Query: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA--AVPV 298 S V P+ +H + NA+I DL + + + ++ LR+ L+ ++ N Sbjct: 244 FFVSAVLPIGFHAQRANALIAWDLRINPADFADYSTEQLRDLLFASRQQHETNGTQRPGA 303 Query: 299 KLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIF--AEAEP 356 + +N+CP LA TL E R I+ + + L EN R++++AIF A Sbjct: 304 TQITLNRCPFLAPLATLTAEAQQRTQIDLATLRERTRWLAENSDFRDRIMAIFDSALEHG 363 Query: 357 FTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFP 416 P +VD +LY+GFF D+ ++++ P L +++ D R+ +LLF YRARN+P Sbjct: 364 EQPPLDVDQRLYDGFFDAQDKQNLQMIRAMRPEQLAGIELNTQDNRLPELLFRYRARNYP 423 Query: 417 GTLDYAEQQRWLEHRRQVFTPEF-----LQGYADELQMLVQQYADDKEKVALLKAL 467 TLD +E QRW + RQ T + +A++L+ L QQY D+K ++ LLK+L Sbjct: 424 ATLDQSELQRWQQFCRQRLTEPTNGQLSITEFAEKLEGLAQQYQDNKHRMQLLKSL 479 >UniRef50_Q0AEW3 Exodeoxyribonuclease I subunit C n=2 Tax=Nitrosomonas RepID=Q0AEW3_NITEC Length = 486 Score = 572 bits (1475), Expect = e-162, Method: Composition-based stats. Identities = 207/463 (44%), Positives = 284/463 (61%), Gaps = 8/463 (1%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 ST +HDYET G +P DRP QFA +RTD N IG+P V YCKPA D LP P A L+T Sbjct: 5 TSTLYWHDYETSGANPRQDRPVQFAGLRTDEALNEIGDPLVIYCKPARDRLPHPEACLLT 64 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 GITPQ A +G E F A IH+ P TC +GYN +RFDDEVTR YRNFYDPYA Sbjct: 65 GITPQMAATRGLPEPEFIALIHAQLAQPGTCGVGYNTLRFDDEVTRFALYRNFYDPYARE 124 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 WQ NSRWD++D+ R +ALRPEGINWP N +G PSFRLE +T ANG+ H +AHDA++DV Sbjct: 125 WQSGNSRWDVIDLARMTFALRPEGINWPVNGEGKPSFRLEDITAANGLMHDSAHDALSDV 184 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 247 ATIA+A+L++ RQPRL+D+LF R+K + L+D+ P++H S M+ + +G T+ V Sbjct: 185 RATIALARLLRDRQPRLYDWLFRLRDKREASHLLDLTAHTPVLHTSRMYPSEQGCTTLVM 244 Query: 248 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAA-VPVKLVHINKC 306 PL N N++++ DL D + ++L+ D L ERL+T K +L + +PVK + +NKC Sbjct: 245 PLLPETGNTNSILVYDLRHDPAEFMQLNVDALVERLFTPKLELAEGQQRLPVKTIRLNKC 304 Query: 307 PVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQ 366 P LA L E A R+G+N + C + ++L ++P +++ ++ + F P ++ D Sbjct: 305 PALAPQKVLNDEIAKRIGLNDEQCQQHWQLLLQHPDFMQRIRQAYSNGKIF-PENDADLA 363 Query: 367 LYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQR 426 LY+GF +D DR +V ++EP L L F D R +LLF YRARNFP TL E+ R Sbjct: 364 LYDGFANDHDRNLFPLVRDSEPERLIDLSEEFQDGRYAELLFRYRARNFPDTLSAQEKHR 423 Query: 427 WLEHRRQVFTPE------FLQGYADELQMLVQQYADDKEKVAL 463 W H R+ + L Y +L L ++ L Sbjct: 424 WQVHCRRQLGEDAINGSLTLNKYRQKLIQLRTDCPQQAQQEIL 466 >UniRef50_B3PLL7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacteria RepID=B3PLL7_CELJU Length = 497 Score = 572 bits (1474), Expect = e-161, Method: Composition-based stats. Identities = 224/481 (46%), Positives = 297/481 (61%), Gaps = 19/481 (3%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 +Q T +HDYET+G PA+DRP QFA +RTD + N++GEP Y +PA D LP+P A Sbjct: 3 STEQITLYWHDYETWGESPAIDRPVQFAGVRTDLDLNILGEPLTIYARPAPDVLPKPEAC 62 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 LITGITPQEA AKG +EA F A IH P TC +GYN++RFDDEVTR YRNFYDPY Sbjct: 63 LITGITPQEAEAKGVSEADFIAAIHRELARPGTCGVGYNSIRFDDEVTRYTLYRNFYDPY 122 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 W++ NSRWDL+DV+R ALRPEGI+WP+ +DG P F+LE LT+ N I H AHDA+ Sbjct: 123 EREWRNGNSRWDLIDVLRMTRALRPEGIHWPDYEDGTPCFKLERLTEVNRISHEAAHDAL 182 Query: 185 ADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTS 244 +DV+ATIAMA+L+K+RQP+L+DY F R+K +LID+ KPL+H+S F +GN + Sbjct: 183 SDVHATIAMARLLKSRQPKLYDYAFRLRDKRFAASLIDIDGQKPLLHISSRFPGQQGNAA 242 Query: 245 WVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDN-AAVPVKLVHI 303 V PLA+HP N+N+VI +LA D SPLL L D LR RL+TA DL + +P+K +H+ Sbjct: 243 LVLPLAYHPANKNSVIAFNLAFDPSPLLNLPVDELRIRLFTASADLPEGVERLPLKEIHL 302 Query: 304 NKCPVLAQANTLRPEDADRLGINRQHCLDNLK-----ILRENPQVREKVVAIFAEAEPFT 358 NK P+L + A RL ++ C +L+ E + EK+ +++ + FT Sbjct: 303 NKTPMLVTTAMVDETLARRLQLDMAICEQHLRAWTQLTRTEREALAEKLDELYSAQD-FT 361 Query: 359 PSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGT 418 + + QLY GFFSDAD+ M V P L + TF D R+ +LLF YRARNFP + Sbjct: 362 GRTDPEQQLYAGFFSDADKRLMSRVRTLSPDALAKTEWTFEDSRLPELLFRYRARNFPES 421 Query: 419 LDYAEQQRWLEHRRQVFTPEF------LQGYADELQMLVQ------QYADDKEKVALLKA 466 LD AEQQRW + T L + + L+ D +K +LK Sbjct: 422 LDPAEQQRWFDFCCGRLTRPDQGASLVLSDFRQRIHALLAGLDVQPPQPDPIKKRQILKQ 481 Query: 467 L 467 L Sbjct: 482 L 482 >UniRef50_D2UDX2 Putative exodeoxyribonucleaseIprotein n=1 Tax=Xanthomonas albilineans RepID=D2UDX2_XANAL Length = 492 Score = 561 bits (1447), Expect = e-158, Method: Composition-based stats. Identities = 212/473 (44%), Positives = 287/473 (60%), Gaps = 9/473 (1%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 62 +D +FLF+D ETFG P R AQFAA+RTD+ N I EP F+ +PADD LP P Sbjct: 10 HDATMPDSFLFYDLETFGADPRRTRIAQFAAVRTDAALNQIEEPISFFVQPADDLLPSPV 69 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 A LITGITPQ+A +G NEA ARI P+TC LGYN++RFDDE R+ +RNF+D Sbjct: 70 ATLITGITPQQALREGINEADAFARIAEQMAQPQTCTLGYNSLRFDDEFIRHGLFRNFHD 129 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHD 182 PY W+ NSRWDLLD++R +ALRP+GI WP+ +DG SF+LE L ANG+ +AH+ Sbjct: 130 PYEREWRGGNSRWDLLDMLRLMHALRPDGIVWPQREDGATSFKLEQLALANGVRDGDAHE 189 Query: 183 AMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGN 242 A++DVYATI MA+ + QPRL++Y R+K +L+DV M+P++HVS + A R Sbjct: 190 ALSDVYATIGMARHFRRCQPRLWEYALKLRDKRFCASLLDVTAMQPVLHVSMRYPASRLC 249 Query: 243 TSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAA-VPVKLV 301 + V PL HP + V++ DL GDI+ LL + + +RLYT + DL + + +K V Sbjct: 250 AAPVLPLTRHPRIDSRVVVFDLEGDINTLLRCTPEEIADRLYTPQADLPEGEQRIALKEV 309 Query: 302 HINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILREN-PQVREKVVAIFAEAEPFTPS 360 H+NK P L LR + +RLGI+ L +RE P + EKV +FA P+ Sbjct: 310 HLNKAPALVAWAHLREAEFERLGIDPAQALAKAARMREAGPTLAEKVRRVFASERATMPA 369 Query: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 +VDA LY+GF +D D+ AM V T P L L+ F D R+ +LLF YRARN+P TL Sbjct: 370 -DVDASLYDGFLADTDKRAMAQVRATAPMQLAPLEHGFRDPRLPELLFRYRARNWPQTLS 428 Query: 421 YAEQQRWLEHRRQVFTPE------FLQGYADELQMLVQQYADDKEKVALLKAL 467 AEQ RW ++RR+ + + YA +L L + +D K ALL L Sbjct: 429 IAEQTRWDDYRRRRLEVDNGLSELTFETYAAQLADLRLAHPEDATKQALLDQL 481 >UniRef50_Q2P315 Exodeoxyribonuclease I n=17 Tax=Xanthomonadaceae RepID=Q2P315_XANOM Length = 481 Score = 558 bits (1437), Expect = e-157, Method: Composition-based stats. Identities = 205/470 (43%), Positives = 284/470 (60%), Gaps = 9/470 (1%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 +FLF+D ETFG P R AQFAA+RTD++ VI EP F+ +PADD LP P A ++ Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 T ITPQ A +G EA ARI + P+TC LGYN++RFDDE R +RNFYDPY Sbjct: 61 TAITPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 W+ NSRWDLLDV+R +ALRP+GI WP+ +DG SF+LEHL AN + +AH+A++D Sbjct: 121 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANDVREGDAHEALSD 180 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWV 246 VYATI MA+ + QP+L+DY R+K L+DV M+P++H+S + A R + V Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240 Query: 247 APLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA-AVPVKLVHINK 305 PL HP + VI+ DL GD LL L D + +RLY DL + +P+K VH+NK Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYIRAADLPEGERRIPLKEVHLNK 300 Query: 306 CPVLAQANTLRPEDADRLGINRQHCLDNLKILRE-NPQVREKVVAIF-AEAEPFTPSDNV 363 P L LR D +RLG+++ L +RE P++ EKV ++ +E P +++ Sbjct: 301 SPALVAWQHLRAADFERLGVDQDAVLAKAARMRELGPELAEKVRQVYGSERAPAAATNDA 360 Query: 364 DAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAE 423 DA LY+GF ++ D+ + V + P L AL+ F D R+ +LLF YRARN+P TL + E Sbjct: 361 DASLYDGFLAEGDKRLLAQVRTSAPAELCALESRFRDPRLIELLFRYRARNWPQTLSFDE 420 Query: 424 QQRWLEHRRQVFTPE------FLQGYADELQMLVQQYADDKEKVALLKAL 467 Q+RW +RRQ + L+ Y ++ L + + DD K ALL L Sbjct: 421 QERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQL 470 >UniRef50_Q8K923 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidicola (Schizaphis graminum) RepID=EX1_BUCAP Length = 482 Score = 557 bits (1435), Expect = e-157, Method: Composition-based stats. Identities = 205/462 (44%), Positives = 301/462 (65%), Gaps = 5/462 (1%) Query: 6 KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 K + FLF+DYETFG H +LD+PAQF++IRTD FN++ EP+ FYC P+DDYLP P ++L Sbjct: 7 KNEVNFLFYDYETFGIHTSLDKPAQFSSIRTDKNFNIMEEPKCFYCFPSDDYLPDPSSIL 66 Query: 66 ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA 125 ITGITP+ G NE F+ +IH + P TCI+GYNN+ FDDE+TRNIFYRNF DPY Sbjct: 67 ITGITPEYTEKHGFNEYKFSKKIHDVLLKPNTCIIGYNNINFDDEITRNIFYRNFLDPYE 126 Query: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMA 185 WSW+++NSRWDLL+V+RACYALRP GI WP+N+ GLP F+L LT+ N I H NAHDA + Sbjct: 127 WSWKNNNSRWDLLNVVRACYALRPSGIQWPKNEFGLPVFKLSDLTQKNNISHYNAHDATS 186 Query: 186 DVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSW 245 DVYATI +AKL+K +QP+LFD+ F +R K++L LID+ + P+++VS FGA R N S Sbjct: 187 DVYATIELAKLIKRKQPKLFDFFFKYRKKNELCRLIDIEKFTPIIYVSSYFGALRQNMSC 246 Query: 246 VAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINK 305 + PL+W N+N +I +DL DI L+ + + + + D + + LV++N+ Sbjct: 247 ILPLSWDLHNKNILISIDLFKDIDKLI-----VFCKTVSISNISIKDLFDLGIVLVYLNR 301 Query: 306 CPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDA 365 CP+LA +R ED +RL + + ++++N + + V + + S NVD Sbjct: 302 CPILAPIKVIRKEDTNRLNFKKYFYYKKINLVKKNYFLIDLVKNVLLKKNENKNSLNVDL 361 Query: 366 QLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQ 425 Q+Y+ FF+ D+ +K + T+ +L + + F D R+++L F Y+ARNF L E++ Sbjct: 362 QIYDSFFNFHDKNLIKKISLTKSSDLKKMKLDFKDPRLKELFFRYKARNFFNILKNDEKK 421 Query: 426 RWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 W+ + + FL GY D+++ L++ Y+ D +K LL L Sbjct: 422 EWINYCLKTLNSFFLTGYIDKIESLLKIYSYDVKKNNLLSDL 463 >UniRef50_A4ADV7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacteria RepID=A4ADV7_9GAMM Length = 482 Score = 548 bits (1411), Expect = e-154, Method: Composition-based stats. Identities = 216/475 (45%), Positives = 286/475 (60%), Gaps = 14/475 (2%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 TF +HDYETFG PA DRP+QFA +RTD + N+IGEP V Y +P DY+P P A Sbjct: 1 MSSSETFYWHDYETFGVDPAYDRPSQFAGLRTDLDLNLIGEPLVIYAQPPRDYVPHPDAC 60 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 LITGITPQ A A+G EA F + I F P TC +GYN++RFDD VTR YRN DPY Sbjct: 61 LITGITPQTALAEGVVEAQFMSTILDEFMKPGTCAVGYNSLRFDDTVTRATLYRNLRDPY 120 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 A + SRWDL+DV+R YALRPEG+NWP DDGLPSFRLE L KANG+E AHDA+ Sbjct: 121 AREYGDGRSRWDLIDVVRTAYALRPEGLNWPTRDDGLPSFRLEDLCKANGLEQGQAHDAL 180 Query: 185 ADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTS 244 DV ATIA+A+ +K +QPRLFD+LF R K + L+D P +P++HVSGMFGA R N Sbjct: 181 VDVKATIALARAIKDKQPRLFDWLFRQRFKQAVKPLLD-PMAQPVLHVSGMFGARRANLG 239 Query: 245 WVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVP-VKLVHI 303 + PLA H +NRN VI DL+ D + +++L ++ L RLYT+ DLG+ P +K VHI Sbjct: 240 LILPLAVHYQNRNEVICADLSVDAALIIDLPAEELHRRLYTSNADLGEGEVRPGIKSVHI 299 Query: 304 NKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQ-----VREKVVAIFAEAEPFT 358 N+CPVL A+R G++ C NL+ LR + +R+K+ A+ +E Sbjct: 300 NRCPVLLPEKMADAAVAERSGLDLAVCHGNLQRLRAYDERMPGALRDKLRAV-SELSGRE 358 Query: 359 PSDNVDAQLYN-GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPG 417 P + D LY+ GF DR + VL P +L + F D R+E++LF YRARN+P Sbjct: 359 PETDPDRMLYSGGFIPKEDRRTLDRVLALTPEDLATTTVAFEDTRLEEMLFRYRARNYPE 418 Query: 418 TLDYAEQQRWLEHRRQVFTPE-----FLQGYADELQMLVQQYADDKEKVALLKAL 467 TL+ E+ RW E+R + L+ ++ + +L+ L Sbjct: 419 TLNDEERARWEEYRFARISEGDGRSLNLEDLNGIIEERLIAAQITDRDRHVLEEL 473 >UniRef50_Q21WQ6 Exodeoxyribonuclease I subunit C n=24 Tax=cellular organisms RepID=Q21WQ6_RHOFD Length = 485 Score = 546 bits (1407), Expect = e-154, Method: Composition-based stats. Identities = 211/477 (44%), Positives = 287/477 (60%), Gaps = 15/477 (3%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 M TFL+HDYETFGT+ DRPAQFAAIRTD+E NVIG P + YC+PA D+LP P Sbjct: 1 MTPSPSHHTFLWHDYETFGTNTRRDRPAQFAAIRTDAELNVIGAPLMLYCQPAGDFLPDP 60 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 A LITGITPQ KG E FAA+I F++P T +GYN +RFDDE+TR +F+RN Sbjct: 61 QACLITGITPQLCLEKGIPEYQFAAQIEQAFSLPGTVGVGYNTIRFDDEITRFMFWRNLI 120 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 DPYA WQ+D RWDLLDV+R YALRP+G+ WP N +G PSF+L L+ ANG+ H AH Sbjct: 121 DPYAREWQNDCGRWDLLDVVRTAYALRPDGMEWPLNAEGKPSFKLTDLSAANGLLHEAAH 180 Query: 182 DAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVP----QMKPLVHVSGMFG 237 DA++DV ATIA+A+L+KT QP+LFD+ F K ++MA + +P Q +P +H+SGMF Sbjct: 181 DALSDVRATIALARLIKTAQPKLFDFCFGLHKKDRVMAELGLPTTLTQARPFLHISGMFA 240 Query: 238 AWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAA-V 296 RG + + PLA HP N+N ++ DLA D L +++++ +R RL+T DL + + Sbjct: 241 PERGCLALMWPLAMHPANKNELLAWDLAFDPRELAQMNAEQIRLRLFTKTADLPEGVQRL 300 Query: 297 PVKLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAE 355 PVK +H+NK P V+ TL A R G+N L N + P + A+F Sbjct: 301 PVKSIHLNKSPTVIGNYKTLSSAMAQRWGLNLDAQLANAAHAQALPDMSGIWPAVF--KR 358 Query: 356 PFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNF 415 P + +VD LY GF +ADR + + + + + L + F D R+ +LL+ YRARNF Sbjct: 359 PAAATPDVDEDLYGGFVGNADRRRLNDLRQLKAQELASARPAFDDARLTELLWRYRARNF 418 Query: 416 PGTLDYAEQQRWLEHRRQVF-----TPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 P +L E RW HR ++ +EL L + D+ A+L AL Sbjct: 419 PQSLSADELARWEAHRSARLFDGEGGALTIEQLFEELDSLAESA--DERGEAILGAL 473 >UniRef50_B8KPJ8 Exodeoxyribonuclease I n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KPJ8_9GAMM Length = 482 Score = 537 bits (1384), Expect = e-151, Method: Composition-based stats. Identities = 208/475 (43%), Positives = 276/475 (58%), Gaps = 14/475 (2%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 T +HDYETFG P DRPAQFA +RTD + N IGEP V Y KP DY+P P A Sbjct: 1 MSSSETLYWHDYETFGVDPGYDRPAQFAGLRTDLDLNPIGEPLVLYAKPPRDYVPHPDAC 60 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 LITGITPQ A A G EA F I F TC +GYN++RFDD VTR YRN DPY Sbjct: 61 LITGITPQAALAAGVPEADFIKAILHEFMQRGTCAVGYNSLRFDDTVTRATLYRNLRDPY 120 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 A + SRWDL+D++R YALRPEG+ WPE DDGLPSFRLE L +ANG+ AHDA+ Sbjct: 121 AREYGDGRSRWDLIDIVRTAYALRPEGLIWPERDDGLPSFRLEDLCEANGLAQGRAHDAL 180 Query: 185 ADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTS 244 DV ATIA+A+L+K RQPRLF +L+ R K + L++ P +P++HVSGMFGA R N Sbjct: 181 VDVQATIALARLLKERQPRLFQWLYQQRFKQAVKPLLE-PMSQPVLHVSGMFGAQRANLG 239 Query: 245 WVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVP-VKLVHI 303 + PLA H +NRN V+ DL+ D L +L + L L+TA DL + P +K VHI Sbjct: 240 LILPLAAHHQNRNEVMCADLSIDADLLTDLPAAELHRLLFTANADLAEGEQRPGLKSVHI 299 Query: 304 NKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQ-----VREKVVAIFAEAEPFT 358 N+CPVL A R ++ + C NL+ LR+ Q +R+K+ ++ +E Sbjct: 300 NRCPVLLPAKMADAAVTQRADLDLEACRANLQHLRDYEQHMPGALRDKLRSV-SELSTRA 358 Query: 359 PSDNVDAQLYN-GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPG 417 P + D LY+ GF DR + +L+ P +L + F D R++++LF YRARN+P Sbjct: 359 PETDPDRMLYSGGFIPKEDRRTLDRILDLSPEDLADTTVAFDDLRLQEMLFRYRARNYPQ 418 Query: 418 TLDYAEQQRWLEHRRQVFTPE-----FLQGYADELQMLVQQYADDKEKVALLKAL 467 TL EQ RW E R + L+G + ++ + + +L+ L Sbjct: 419 TLSAEEQLRWEEFRFNRISEGDGRSLTLEGLNELIEERLASPQLCERDRQVLEEL 473 >UniRef50_A0Z9I3 Exonuclease n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z9I3_9GAMM Length = 483 Score = 534 bits (1375), Expect = e-150, Method: Composition-based stats. Identities = 211/468 (45%), Positives = 279/468 (59%), Gaps = 6/468 (1%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 +F +HDYET G + DRP QFA +RTD FNVI EP V YC+P+ D L P A+ Sbjct: 1 MSSSESFYWHDYETSGANVFEDRPLQFAGVRTDKNFNVISEPLVHYCRPSPDCLLHPAAI 60 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 +TGI+P +A A+G NE AF A+I F VP TC LGYN+VRFDDE+TR YRNF+ PY Sbjct: 61 RVTGISPYKALAEGANEGAFMAKIQREFMVPGTCALGYNSVRFDDEITRFALYRNFFPPY 120 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 A + + SRWDL+DV RA YALRP+GI WP +DGLPSFRLE LT ANGI+H NAHDA+ Sbjct: 121 AREFGQNRSRWDLIDVARAIYALRPDGIVWPIREDGLPSFRLEDLTAANGIDHGNAHDAL 180 Query: 185 ADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTS 244 ADV ATIA+AKL+ QP LFD L+ R K + L++ KP++HVSG FGA R N + Sbjct: 181 ADVLATIALAKLLSKAQPTLFDTLYAQRGKQAIAPLLNCLDPKPVIHVSGQFGAQRDNLA 240 Query: 245 WVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAA-VPVKLVHI 303 V PLA HP N+N VI DL G+ L+ S+ +R+ L+T K D P+K++ I Sbjct: 241 IVLPLAVHPTNKNGVICADL-GEAPAFLDQSSEDVRQLLFTPKADFPAGVQRPPLKMIQI 299 Query: 304 NKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEA----EPFTP 359 N+ PV+ + E A RL ++ +L R QV K F E F P Sbjct: 300 NRAPVVLPTTWVSGEPAQRLRLDGDQTRASLAAYRVARQVDPKGFTRFIEEIYADRAFAP 359 Query: 360 SDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTL 419 + D QLY GF D A ++ + + P +L + TF D+R+ ++ F YRARNFP +L Sbjct: 360 RSDPDTQLYEGFLGRHDEALLETIRQATPDSLASHTWTFEDRRLPEVFFRYRARNFPESL 419 Query: 420 DYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 D E+ RW EH R+ T + + + L ++ A + V + AL Sbjct: 420 DPDEKARWREHCRETLTGKAGPDWEGFSKQLNEERAREGLSVMQIAAL 467 >UniRef50_B4SPA5 Exodeoxyribonuclease I n=3 Tax=Stenotrophomonas RepID=B4SPA5_STRM5 Length = 479 Score = 531 bits (1367), Expect = e-149, Method: Composition-based stats. Identities = 204/467 (43%), Positives = 282/467 (60%), Gaps = 9/467 (1%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 +FLF+D ETFG P R +Q+AAIRTD++ N I P F+ +PADD LP P A L+TG Sbjct: 3 DSFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLVTG 62 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 ITPQ+A A+G +EA RI+ + P TC LGYN +RFDDE R +RNF+DPY W Sbjct: 63 ITPQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYEREW 122 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 ++ NSRWDLLD++R A+RPEGI WP +DG SF+LEHL +AN + +AH+A++DV Sbjct: 123 RNGNSRWDLLDMLRLMRAMRPEGIQWPLREDGATSFKLEHLAEANNVREGDAHEALSDVR 182 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 ATI MA+L K QPRL+DY R+K + +L+DV MKP++H+S + A R + V P Sbjct: 183 ATIGMARLFKQSQPRLWDYALKLRDKRFVGSLLDVAAMKPVLHISMRYPASRLCAAPVLP 242 Query: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDN-AAVPVKLVHINKCP 307 L+ HP N VI+ DL GDI LLEL ++ + +RLY ++L + VP+K V +NK P Sbjct: 243 LSMHPTVNNRVIVFDLDGDIDDLLELPAEVIAQRLYMRASELPEGATRVPLKEVQLNKVP 302 Query: 308 VLAQANTLRPEDADRLGINRQHCLDNLKILRE-NPQVREKVVAIFAEAEPFTPSDNVDAQ 366 L N LR +D RLG++ + LR PQ+ EK ++ + + +VDA Sbjct: 303 ALIAWNHLRADDHARLGLDVAAIEAKAERLRAFAPQLAEKARQVYNQPRVANVA-DVDAS 361 Query: 367 LYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQR 426 LY+GF D+ + + T P L AL+ F D R+ +LLF YRARN P +L E+QR Sbjct: 362 LYDGFLGAGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPDSLAPDERQR 421 Query: 427 WLEHRRQV------FTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 W ++RRQ L Y +L L + DD + LL++L Sbjct: 422 WQDYRRQRLLGDGGLGELNLPQYQQQLDALAAEAPDDARRQDLLQSL 468 >UniRef50_A4BJV3 Putative exodeoxyribonuclease i protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BJV3_9GAMM Length = 517 Score = 525 bits (1353), Expect = e-147, Method: Composition-based stats. Identities = 186/469 (39%), Positives = 272/469 (57%), Gaps = 10/469 (2%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 M N+ ++L++DYET+GT P+ DR AQFAA+RTD + N+I EP +CKP D + Sbjct: 1 MPNNATHPPSYLWYDYETWGTVPSRDRIAQFAAVRTDMDLNIIEEPINLFCKPDIDTVID 60 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 PGAV IT ++P E G +E F+ +H+ P TC GYN++RFDDE +R +FYRN Sbjct: 61 PGAVQITRLSPLELEQTGLSEWEFSQAVHNAMAQPNTCTTGYNSIRFDDECSRFLFYRNL 120 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 +PY W++ NSRWDLLDV+R +ALRP+GI WP DDG PSFRLEHLT ANG+ H+NA Sbjct: 121 INPYEREWKNGNSRWDLLDVVRMTHALRPDGIEWPRRDDGSPSFRLEHLTAANGLSHANA 180 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 HDA++DV ATIA+A+L++ +QP+LFDY F+ R+KH+ ID+ KP +H SG A Sbjct: 181 HDAVSDVKATIALAQLIRKQQPKLFDYAFSLRSKHRAREAIDLVGGKPHLHFSGKIPASE 240 Query: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA-AVPVK 299 PL HP+ N VI++D+ D + +L+ D+DTLR LY +L + A P+K Sbjct: 241 FCMGIEVPLMAHPDRNNEVIVIDIREDPAWILDHDADTLRTWLYAKTEELPEGARRPPLK 300 Query: 300 LVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTP 359 +H+N+ P++A + L E RLG++ + + + ++P++ + +F E + Sbjct: 301 TIHLNRSPMIAPMSLLDDETTTRLGVDLDAIQHHYRWVADHPELNRLAMDVFTETQERAA 360 Query: 360 SDNVDAQLYNGFFSDADRAAMKIVLE--TEPRNLPALDITFVDKRIEKLLFNYRARNFPG 417 + + LY+GF SD D+A + + P D R+ +L N AR FP Sbjct: 361 ITDPEQALYSGFISDHDQALLNRMRTGKLPPEQWLDNSHLLQDDRLPTILLNLLARAFPD 420 Query: 418 TLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKA 466 L + W + RR +L DE + + Q D +ALL Sbjct: 421 CLTEQQLSEWQDQRRT-----YLIEQQDERHLTLSQALTD--TLALLAE 462 >UniRef50_P57620 Exodeoxyribonuclease I n=2 Tax=Buchnera aphidicola (Acyrthosiphon pisum) RepID=EX1_BUCAI Length = 413 Score = 516 bits (1330), Expect = e-145, Method: Composition-based stats. Identities = 195/415 (46%), Positives = 273/415 (65%), Gaps = 5/415 (1%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 M+ K+ FLF+DYETFG H ALD+PAQFA IRTD N+I +P+ FYC P+DDYLP Sbjct: 1 MIQFQKKTPNFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPD 60 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 PG+VLIT ITPQ G NE F+ +I+ + TC++GYNN+ FDDE+TRNIFYRNF Sbjct: 61 PGSVLITHITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNF 120 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 +DPY WSW++ NSRWD+L+++RACYALRP GINWP+N+ GL SF+L LTK N I H NA Sbjct: 121 FDPYEWSWKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNA 180 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 H+A++DVYATI +AKLVK +QPRLFD+ F R K++L LID+ +P++++S FGA Sbjct: 181 HNAVSDVYATIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIY 240 Query: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 N S + P+AWH N N +I +DL DI L+ + + ++ V L Sbjct: 241 HNMSCILPIAWHENNSNILIAIDLFKDIKTLINMCKKICFDSIFIKN-----LLDSGVVL 295 Query: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 +H+N+CP+LA +R ED +RL +R ++++++N + + IF++ Sbjct: 296 LHLNRCPILAPIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNIKIIFSKNNNTNQF 355 Query: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNF 415 NVD ++YNGFF+ D+ ++I+ T+P L + F D R++ L F YRARNF Sbjct: 356 FNVDLEIYNGFFNSKDKKKIQIIRNTDPVFLKHIFCNFHDSRLKNLFFRYRARNF 410 >UniRef50_A5KSP8 Exodeoxyribonuclease I n=2 Tax=candidate division TM7 RepID=A5KSP8_9BACT Length = 476 Score = 503 bits (1295), Expect = e-141, Method: Composition-based stats. Identities = 174/470 (37%), Positives = 255/470 (54%), Gaps = 9/470 (1%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 MM D + TF F+D ET G P DR QFA RT + + IGEP + DD LP Sbjct: 1 MMKDMAE--TFFFYDLETSGLDPRRDRIMQFAGQRTTMDLDPIGEPFNILVRLNDDVLPS 58 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 P AV++TGITPQ+ +G EA F H+ P T +G+NN+RFDDE R +RNF Sbjct: 59 PDAVMVTGITPQKTHEEGIAEAEFIKLFHNQVCTPGTVTVGFNNIRFDDEFIRFALWRNF 118 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 +DPY W+W+ SRWDLLDV+R ALRP GI WP + P+ RLE LT N +EHS A Sbjct: 119 HDPYEWAWKDGRSRWDLLDVVRMTRALRPGGIVWPVDKSDKPTNRLELLTSENNLEHSQA 178 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 HDA++DVYA IA+ ++V+ +QP+LF+YLF+ R+K + L++ + KP+V+ SG + A Sbjct: 179 HDALSDVYALIAITRMVRDKQPKLFEYLFSIRDKKAVTQLVNPYKPKPIVYTSGRYDANY 238 Query: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDN--AAVPV 298 TS V P+A + DL + +L + +++RL + D A+PV Sbjct: 239 HKTSVVFPIA-EGSRPGTTFVYDLRHNPQQFTDLSPEEIKKRLLAKWEERKDPNFVAIPV 297 Query: 299 KLVHINKCPVLAQANTLRP-EDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPF 357 K V N+ P +A L + + + + +L++L+ +P + K+ + E+ F Sbjct: 298 KEVTHNRAPAVAPLGVLEQGGGWENIQLTNETVRKHLEVLQRSPDLVTKIKTAY-ESRSF 356 Query: 358 TPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPG 417 S + +AQLY+ F +D D+ ++ V R L F DKR+ LL Y+ARNFP Sbjct: 357 PKSSDAEAQLYDSFLNDKDKTHIQAVRNASERELADFHPEFNDKRLPPLLIRYKARNFPR 416 Query: 418 TLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 +L EQ W +R E L GY + + + + + LL+ L Sbjct: 417 SLSEEEQVEWEAYRATRLQAE-LPGYMGAIARIAKTDPSENTQF-LLQEL 464 >UniRef50_Q89A43 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=EX1_BUCBP Length = 481 Score = 502 bits (1293), Expect = e-141, Method: Composition-based stats. Identities = 194/470 (41%), Positives = 293/470 (62%), Gaps = 10/470 (2%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 M TFLF+DYETFG +PALD+P+QF+ I+TD +FN+IG + +C P+ DYLP Sbjct: 1 MDIQKNTSLTFLFYDYETFGKNPALDKPSQFSCIQTDIDFNIIGSIQEIFCYPSVDYLPD 60 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 P +VLITGI+P+ G NE FA +I+SLF TCI+GYNN+ FDDE TRNIFYRNF Sbjct: 61 PESVLITGISPKYTSLFGVNEFEFAKKIYSLFMKSDTCIIGYNNIYFDDEFTRNIFYRNF 120 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 + Y WSW++ NSRWD+LD++RACY LRPEGINWP N+D S RL ++ AN I H+ A Sbjct: 121 LNSYEWSWKNGNSRWDMLDLLRACYVLRPEGINWPRNEDNSVSLRLSDISLANNIVHNVA 180 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 H+A +DVYAT+ +AKL+K ++P+LF++ F +R K ++ LIDV + P+V++S FG Sbjct: 181 HNASSDVYATMNIAKLIKQKKPKLFNFFFKYRTKKAILTLIDVNSLNPIVYISRFFGVVN 240 Query: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 S++ P+ WHP N N ++ +DL+ D+ +L +R + + + ++ Sbjct: 241 RYISYIVPILWHPINSNILVSIDLSQDVQKILN-----FFKRNSILNVNYKEIFLMGIRF 295 Query: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILREN---PQVREKVVAIFAEAEPF 357 +++N+CP+L N +R +D RL IN + +NL +LR+N + +K + AEA + Sbjct: 296 IYVNRCPILIPTNVIRMKDRIRLRINYKLFQNNLVLLRKNIFLKKKLKKFLCSIAEAPKY 355 Query: 358 TPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPG 417 S NVD ++YN FFS D +K + T P+ + ++ D RI +L + AR P Sbjct: 356 NGS-NVDLKMYNSFFSYIDNNVIKNIHSTLPKRIK-INFMKYDNRINQLFILFLARYRPD 413 Query: 418 TLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 LDY+E+ W++ +F+ +Q Y +++ L+ +Y + V LL+ L Sbjct: 414 MLDYSEKYFWIQRYLNIFSYANIQKYENKILKLIVKYKNHVRNVQLLEEL 463 >UniRef50_UPI0000E0E98F exodeoxyribonuclease I n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0E98F Length = 488 Score = 499 bits (1284), Expect = e-139, Method: Composition-based stats. Identities = 181/477 (37%), Positives = 269/477 (56%), Gaps = 14/477 (2%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 + ++FLFHDYET+G P D P QFAAIRTD EP K DYLP P AV Sbjct: 2 SQPPASFLFHDYETWGISPQHDYPCQFAAIRTDENLQQCDEPINITAKIHLDYLPHPQAV 61 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 L+TGITPQ A+GE E F +IH P TC++GYN+++FDDEV+R F+RNF DPY Sbjct: 62 LVTGITPQMTLAEGEYEYTFMQKIHQAMIQPNTCVVGYNSIKFDDEVSRFSFFRNFMDPY 121 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 + H NSRWDL++++RACYALRPEGI WP D+GL SF+LE LT+ NGI H+NAHDA+ Sbjct: 122 QREYLHGNSRWDLINLVRACYALRPEGIKWPLGDNGLVSFKLERLTQENGISHTNAHDAL 181 Query: 185 ADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTS 244 +DV+ATIA+A+L++ +QP+LF Y + R+K ++ +++ +PL+ ++ A G S Sbjct: 182 SDVHATIAIAQLIQQQQPKLFAYAYQLRSKQAVIRILEQHHGQPLIFINPYRSAKFGCVS 241 Query: 245 WVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAA-VPVKLVHI 303 + P+ HP N+NA + +DL DI PL+ D DTL+ + K + + ++ Sbjct: 242 IIMPMCPHPVNKNATVCIDLTKDIFPLINEDLDTLQRIQFLPKAQRNEETPDIATIVIKH 301 Query: 304 NKCPVLAQANTLRPEDADRLGINR---QHCLDNLKILRENPQVREKVVAIFAEAEPFT-- 358 N+CP LA TL ++ L I+ +++LK + ++ + ++ + T Sbjct: 302 NQCPFLAPIKTLSQSRSEALNIDLNKVDQQVEHLKHICQDQESYANLIMTLTQLNSQTYD 361 Query: 359 ---PSDNVDAQLY-NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARN 414 P+ +V+A LY GF +DA++ + V P L L RI++L + ARN Sbjct: 362 AEKPATDVEASLYTGGFMNDAEKQFCQQVHMASPNELVNLKNNTPSPRIDELFQRFIARN 421 Query: 415 FPGTLDYAEQQRWLEHRRQVFTPE----FLQGYADELQMLVQQYADDKEKVALLKAL 467 F TL Q +W ++ T L Y + ++ L ++ LL+ L Sbjct: 422 FLDTLSTDLQSQWYVDCQRRLTNNTQKLTLMRYFEIIEELKSTENLSSTQLYLLEEL 478 >UniRef50_Q056Y2 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q056Y2_BUCCC Length = 475 Score = 486 bits (1250), Expect = e-135, Method: Composition-based stats. Identities = 148/461 (32%), Positives = 253/461 (54%), Gaps = 6/461 (1%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 + +F+DYETFG + ALD+ +QF +I TD++F+ I + + +C P DYLP P A+LI Sbjct: 6 SKKKIIFYDYETFGKNVALDKVSQFCSIETDNKFSYIIKKTILFCYPPIDYLPDPEAILI 65 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 T I PQ G NE + +IH +F+ CI+GYNN+ FD+ +TRNIFYRN +DPY W Sbjct: 66 TKILPQYTYKYGLNEYFLSKKIHDIFSQKNICIIGYNNINFDNLITRNIFYRNLFDPYEW 125 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 SW+++N WD+L+++RA Y P+ + W N +G SF+L +T N I+H + HDA +D Sbjct: 126 SWKNNNFSWDILNILRAFYIFLPKSMCWYYNSNGTVSFKLSDITLVNNIKHIHIHDAYSD 185 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWV 246 VYAT + K + ++ F YL+ K + + + KP ++S FG+ N + Sbjct: 186 VYATFLITKYLFSKYKNFFLYLYMISKKKYISSFLLNNINKPFFYISSFFGSINYNFGCI 245 Query: 247 APLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKC 306 + HP +N +++ DL+ D + L ++ T + V +K+V I+K Sbjct: 246 MYIGLHPLYKNNIVIFDLSSDFKKIFN-----LYKKYSTCLISIKKLFNVGIKVVSISKS 300 Query: 307 PVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQ 366 P+ N++ + RL I+ C N +L+ N ++ +++ F+ + +++D Sbjct: 301 PLFFSYNSVSLKHCIRLNIDYLKCQKNFFLLKNNFLIKNWIISCFSYKKKEKI-NDIDLM 359 Query: 367 LYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQR 426 LYN FF ++DR + + + EP+ F+D RI+KL F +ARNF L++ E ++ Sbjct: 360 LYNNFFLNSDRCLLSFIHKNEPKKWMGWSANFLDNRIKKLFFRLKARNFIKLLNFNEIKK 419 Query: 427 WLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 W + + L+ Y ++++ ++ + + LL+ L Sbjct: 420 WQFYCKNKINFIKLEEYFEKIKKFQLKFNKNDKNFILLEDL 460 >UniRef50_A5CVQ8 Exodeoxyribonuclease I n=4 Tax=Gammaproteobacteria RepID=A5CVQ8_VESOH Length = 473 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 166/469 (35%), Positives = 261/469 (55%), Gaps = 16/469 (3%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 TF ++DYETFG P +DR +QFA IRTD FN++ E ++FYCKP +D L P LITG Sbjct: 2 KTFYWYDYETFGISPKIDRISQFAGIRTDENFNILDE-QMFYCKPTNDCLLSPETCLITG 60 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 I+PQ KG E F +IH+ + P TC++GYN++RFDDE TR YRNF DPY W W Sbjct: 61 ISPQLCEQKGMIEHKFIKKIHAQLSTPDTCVIGYNSIRFDDEFTRYALYRNFIDPYTWHW 120 Query: 129 QHDNSRWDLLDVMRACYALRPE-GINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 ++ N+RWD+LDV+R CYAL+ + + W ++ F+L+ L+ AN IEH+ AH+A+ADV Sbjct: 121 KNGNTRWDILDVVRLCYALKKDTSLKWVYDEQNKVIFKLDQLSLANNIEHTYAHNALADV 180 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 247 YATIA+AK++K QP+LF+Y F+ R K + I + +P++H S ++ A T Sbjct: 181 YATIAIAKIIKKTQPQLFNYAFSLRKKKTIKEKIKL--FEPMLHTSRVYSATLSCTRLSV 238 Query: 248 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTD---LGDNAAVPVKLVHIN 304 LA+H + V + +L D LLEL+ TL+ ++T + + +K + N Sbjct: 239 ALAYHS-YHDRVFVFNLDQDPCILLELNIKTLKTLMFTKNNQSALSKEMKGLQIKELIFN 297 Query: 305 KCPVLAQ-ANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVA-IFAEAEPFTPSDN 362 K P+ L + +L I+ CL L+ +++N + KVV ++ + PS + Sbjct: 298 KSPMFVPNVYKLESKIIKQLKIDMSTCLQRLEFIKKNQVIISKVVQDLYRNDQQRQPSSD 357 Query: 363 VDAQLYNGFFSD-ADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421 VD LY+ F +D D+ + L F D R+ KLL +++ARN+P L Sbjct: 358 VDQALYDDFINDNTDKHICNQIQTLSTNELKNFHPKFKDNRLSKLLIHFKARNYPNILTE 417 Query: 422 AEQQRWLEHRRQVF-----TPEFLQGYADELQMLVQQYADDKEKVALLK 465 E++ W + ++ + Y + ++ +Q+ + ++ L+ Sbjct: 418 NEKEEWFKTVQERVQTGKNGYTTIDDYLARINIIRKQHPNQEKLWKQLE 466 >UniRef50_Q7VQX2 Exodeoxyribonuclease I n=2 Tax=Candidatus Blochmannia RepID=Q7VQX2_BLOFL Length = 501 Score = 480 bits (1236), Expect = e-134, Method: Composition-based stats. Identities = 190/486 (39%), Positives = 287/486 (59%), Gaps = 21/486 (4%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 M ++ TFL +DYETFG +PALDRPAQFA+IR ++ + + EVF+C+ +DYLP P Sbjct: 1 MLSNIKKPTFLIYDYETFGLNPALDRPAQFASIRVNNSLCPVEKKEVFFCQIPNDYLPNP 60 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 +VLITGITP + + G E FA +I F VP TCILGYNN+ FDDE +RNIFYRNFY Sbjct: 61 ESVLITGITPYDTLSNGLLEPQFAYQISQKFNVPNTCILGYNNISFDDEFSRNIFYRNFY 120 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 DPY WS+ H NSRWDLL V+RA Y+L P GI WP N SFRL LT AN I+H NAH Sbjct: 121 DPYKWSYHHGNSRWDLLPVLRAFYSLYPTGIQWPINSKKKVSFRLTDLTLANSIQHLNAH 180 Query: 182 DAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG 241 DA +D++AT+ + KL+K QP+LF +L+ HR K++L +I++ MKPL+H+S Sbjct: 181 DATSDIFATLEIMKLIKYTQPQLFQFLYNHRTKNQLQKIINLNSMKPLIHISNKINNKYN 240 Query: 242 N-TSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGD-NAAVPVK 299 N ++ P+ HP N N +I +L + L L+ +TL + + + + + +P++ Sbjct: 241 NFIHFLLPITLHPNNHNVLITYNLLNKLDILWNLNINTLYQNIKDNQQCIYNLLKQIPLQ 300 Query: 300 LVHINKCPVLAQANTLRPED-----ADRLGINRQHCLDNLKILREN---PQVREKVVAIF 351 L+ +N CP+ L+ + L + Q+ L NL +++ +++K+ + + Sbjct: 301 LIRLNSCPIFIPITVLQENNNIFKYTSELLSDYQNHLKNLHEIKQKINYTHLQQKIKSFY 360 Query: 352 AEAEPFTP------SDNVDAQLYNGFFSDADRAAMKIVLE-TEPRNLPALDI--TFVDKR 402 E + S +VD QLYNGFF +D +K + T+ + L + I D R Sbjct: 361 VIIESYLNKIKNKLSTHVDNQLYNGFFQYSDCRIIKQIRNITDVQKLSTIHINSNSNDNR 420 Query: 403 IEKLLFNYRARNFPGTLDYAEQQRWLEHRRQV-FTPEFLQGYADELQMLVQQYADDKEKV 461 ++ LLF YR+RNFP TL+ E++ W +++ + + + Y + L+ ++ +K+ Sbjct: 421 LKSLLFFYRSRNFPHTLNSEEKKIWTTYKKNMLLNQDKYKNYLHHINYLLFN-QNNIKKI 479 Query: 462 ALLKAL 467 LL +L Sbjct: 480 NLLSSL 485 >UniRef50_D0KZN4 Exodeoxyribonuclease I n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KZN4_HALNC Length = 495 Score = 475 bits (1223), Expect = e-132, Method: Composition-based stats. Identities = 173/485 (35%), Positives = 259/485 (53%), Gaps = 28/485 (5%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 +FLF+D+ET G+ P DRP QFAA+RT+ E I P Y + + LP P AVL+TGI Sbjct: 2 SFLFYDFETTGSDPRCDRPIQFAALRTNDELEPIDSPLTLYATLSPEVLPHPQAVLVTGI 61 Query: 70 TPQEARAKG-ENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 PQ + G EA FAA IH+ P TC +G+N++RFD E+ R +F+RN DPYA W Sbjct: 62 LPQTLASSGGRPEAEFAALIHAEMMQPGTCAVGFNSLRFDAELLRFMFWRNLRDPYAHEW 121 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 + NSRWD+LD RA LRPEGI+WP ++ G P+ RLE LTK N I H+NAHDA+ DV Sbjct: 122 KSGNSRWDVLDAARAFRLLRPEGIHWPTDEQGAPTLRLEALTKVNVIAHANAHDALGDVE 181 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 AT+A A+L++ + P+LF+YL + R K + +D P+ VHVSG + G+ S A Sbjct: 182 ATLAFARLMRAQSPKLFEYLLSLRKKAVVADFVDNPERASFVHVSGRISSTLGSASVFAN 241 Query: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA-AVPVKLVHINKCP 307 L ++ DL D + +L+ D +TL R + D DN +P+KL+H+N+ P Sbjct: 242 LGQVQGINTQRLLWDLRFDPTEVLDDDMETLAARRFLRDADAQDNQHRLPIKLLHLNRAP 301 Query: 308 VLAQANTLRPED-ADRLGINRQHCLDNLKILRE-NPQVREKVVAIFAEAEPFTPSDNVDA 365 V+ L+ D +R+ ++ N + + + +V +K+ A+ AE F S + + Sbjct: 302 VVVPNAILKEGDIVERMQLDLDAVQKNTRTMAQFKREVADKLHAVLAEQMAFA-SQDAEC 360 Query: 366 QLYNGFFSDADRAAMKIVLE---------TEPRNLPALD-------ITFVDKRIEKLLFN 409 LY GF + DR A+ ++ P + ++ D R+ +L+F Sbjct: 361 ALYEGFMPNVDRYALDDFNRVFDQAMAAGGSAQDEPVTEALRKLMAQSWQDARLPELVFR 420 Query: 410 YRARNFPGTLDYAEQQRWL---EHRRQVFTPEFLQGYADELQMLVQQYAD----DKEKVA 462 + AR P L+ E+ +W + R + G+A + AD D+ +A Sbjct: 421 FVARLRPDLLNEDERTQWQSWVDSRLNAAPDQRYMGFAGFFAAIDALMADAAYRDEATLA 480 Query: 463 LLKAL 467 LL L Sbjct: 481 LLTQL 485 >UniRef50_B8KX06 Exonuclease I n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KX06_9GAMM Length = 408 Score = 438 bits (1127), Expect = e-121, Method: Composition-based stats. Identities = 165/401 (41%), Positives = 231/401 (57%), Gaps = 13/401 (3%) Query: 77 KGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWD 136 +G++E F +IH+ VP TC +GYN++RFDDEV R YRNF+DPY + + NSRWD Sbjct: 3 RGDSECDFVDKIHAALAVPGTCGVGYNSIRFDDEVMRFALYRNFFDPYQREYANGNSRWD 62 Query: 137 LLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKL 196 L+DV RA YALRPEG WP D+GLPSFRLE LT ANGI H AHDA++DV ATI +A+ Sbjct: 63 LIDVARAIYALRPEGTQWPARDNGLPSFRLEDLTAANGIAHGAAHDALSDVDATIDLARH 122 Query: 197 VKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENR 256 + QP LF L + R K + L+D+ ++P+VHVS M+G+ R N + V PL HP NR Sbjct: 123 FQNVQPALFAELLSMRRKRHVETLMDLGSLRPVVHVSSMYGSDRSNLALVVPLVRHPVNR 182 Query: 257 NAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDN-AAVPVKLVHINKCPVLAQANTL 315 N +I DL+ L + + RL+T ++L + P+K +HINK PV+ + Sbjct: 183 NEIICADLSQ-PPDFLSESATDMAARLFTPASELPEGAVRPPIKTIHINKSPVVLNTQWV 241 Query: 316 RPEDADRLGINRQHCLDNLKILRENPQ-----VREKVVAIFAEAEPFTPSDNVDAQLYNG 370 R E A+RLG++ + +L +R+ +++++ I++E F P + D LY+G Sbjct: 242 RGEVAERLGLDGEAHRRHLAEIRQANDKNPEGLKQRLQDIYSERR-FAPRTDPDVMLYDG 300 Query: 371 FFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEH 430 FF ++DR+ + P L + F D R+E+LLF YRARNFP TLD E RW EH Sbjct: 301 FFPNSDRSQFDGLRAASPEQLAS-GWVFEDARLEELLFRYRARNFPATLDAEESARWQEH 359 Query: 431 RRQVF----TPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 R + P L + +EL L AL Sbjct: 360 CRHRYFDADAPFPLTAFREELAQERSAPDLSDSVARALDAL 400 >UniRef50_C0QKN8 SbcB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKN8_DESAH Length = 471 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 140/477 (29%), Positives = 210/477 (44%), Gaps = 43/477 (9%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 TFLF+D ET G +PA D+ FAAIRTD E I + +D +P PGA + Sbjct: 2 KTFLFYDIETSGLNPAFDQILTFAAIRTDLELREIDRTSIV-ISLRNDIVPSPGAFITHR 60 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 +TP++ G E A IH L P T +GYN++ FDDE R FYRN DPY + Sbjct: 61 LTPEDL-KDGLCEYQGVALIHRLLNTPDTISIGYNSLGFDDEFLRFAFYRNLLDPYTHQY 119 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGI-EHSNAHDAMADV 187 +D +R DLL + +P+GI+WP DD S RLE +++ N + + AHDAM DV Sbjct: 120 ANDCARMDLLPIATLYRIFKPDGIHWPVIDD-KASMRLELISEKNNLVQSGRAHDAMTDV 178 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDV---------PQMKPLVHVSGMFGA 238 AT+A+A+ + + Q R+++Y +K A +D + + + VS FG+ Sbjct: 179 EATLALARRL-SGQKRMWNYCLDFFDKKNDQARLDAVDEVFQSIFGRHRLCIMVSVSFGS 237 Query: 239 WRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPV 298 + V L N + + L +E + K D GD V Sbjct: 238 DLTYMAPVLSLGHSTPYANQSLWLRLD--------------KELVLPFKPDSGDGPFVLR 283 Query: 299 KLVHINKC--PVLAQ-ANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAE 355 K K P L + N L P Q C N+ +L+ N +K+V + Sbjct: 284 KRYGEAKIVLPSLDRFWNRLTPS-------QHQVCEKNIAMLKANQDEFQKLVIHHRSFK 336 Query: 356 -PFTPSDNVDAQLY-NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRAR 413 PF P ++DA LY +GFFS ++ M + + T V R++ L R Sbjct: 337 YPFVPDLDLDASLYQDGFFSSVEKKEMGVFHRAINNGEMGVCETLVSPRVKGLAQRIVLR 396 Query: 414 NF---PGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 NF A R++ R + ++GY ++L+ A + V + L Sbjct: 397 NFYEQAAPEVRAGHDRYMVKIRGPLGDDPVKGYRNDLKFTCDMAAQELASVRSAQGL 453 >UniRef50_B9NSM4 Exodeoxyribonuclease I n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NSM4_9RHOB Length = 469 Score = 370 bits (949), Expect = e-101, Method: Composition-based stats. Identities = 117/431 (27%), Positives = 196/431 (45%), Gaps = 25/431 (5%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F F D ET GT PA D+P QFA I TD + + C+ + LP P A+ +TG++ Sbjct: 2 FAFFDLETSGTSPAFDQPLQFAGILTDDTLEEVERID-IRCRLSPHILPAPWALAVTGVS 60 Query: 71 PQEARAKGENEA-AFAARIHSLFTVPKTCI-LGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 P A F+ + SL GYNN+ FD+++ R +FY+N + + Sbjct: 61 PGMLSNPNLPSAFEFSQEVSSLIHRWGPATWTGYNNIAFDEQMLRQMFYQNLHPNLYLTQ 120 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 N R D++ ++ A + L + + WP ++ G +F+L+ L ANG +N HDA+ADV Sbjct: 121 MDGNDRMDIMKLVYATWVLANDALTWPTDEAGKITFKLDQLAPANGFVSNNFHDALADVE 180 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 ATI +AKL++ R P ++ +R+K+ + ++ Q+ L+ FGA A Sbjct: 181 ATINIAKLIRDRAPDVWVQSLRNRSKNNVQDIMQSGQVLTLI---ERFGATPPRAYRGAY 237 Query: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308 +P+NRNA+ ++DL +D +TL +A + + V+ V IN P Sbjct: 238 AGQNPDNRNALALMDLDL-------VDPNTLDPTDASAIANAVSASPKTVRTVAINNAPN 290 Query: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEA-EPFTPSDNVDAQL 367 L + + I+ L+ + LR N ++ + AE + D V+ ++ Sbjct: 291 LFE-----------VPIDDSDLLNRAEDLRGNHDLQTALGNALAERFADRSEPDQVEQKI 339 Query: 368 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 427 Y GF+S D+ + + F D+R++ L N P L Q W Sbjct: 340 YAGFYSTDDKKRLNQFEFASWAKRIEIAQAFEDRRLQWLASRLIYLNEPSLLSRYAQDYW 399 Query: 428 LEHRRQVFTPE 438 + Q + + Sbjct: 400 KDAIDQRWQND 410 >UniRef50_B5K7E4 Exodeoxyribonuclease I n=3 Tax=Rhodobacteraceae RepID=B5K7E4_9RHOB Length = 500 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 123/420 (29%), Positives = 192/420 (45%), Gaps = 31/420 (7%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F+F+D ET G PA D+P QFAAI TD F V + C+ A LP P A+++T +T Sbjct: 3 FVFYDLETTGLSPAFDQPLQFAAIYTDENF-VEKDRVNIRCRLAPHILPSPQALVVTRVT 61 Query: 71 P-QEARAKGENEAAFAARIHSLFTVPKTCI-LGYNNVRFDDEVTRNIFYRNFYDP-YAWS 127 P Q + F+ ++ L I +GYN ++FD+EV R FYRN YA Sbjct: 62 PDQLTDPSLPSLFEFSQQVAELTERWAPAIWVGYNTIKFDEEVLRQTFYRNLSPNVYATQ 121 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 + + N+R+D+L + A Y P+ + WP++D G SF+L+ L ANG + NAHDA+ DV Sbjct: 122 F-NGNTRFDILPAVYAAYVREPDLLAWPKDDTGRRSFKLDRLAPANGFKAHNAHDALGDV 180 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 247 ATI +A+L+ R P L+ L + +K ++ A ++ +P V+ FG + Sbjct: 181 EATIHIARLIAMRSPALWSELLDNAHKARVQAKLE--SFRPYELVT-RFGGGEPRSYTGC 237 Query: 248 PLAWHPENRNAVIMVDL-AGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKC 306 + NR DL A D + +E + + + D ++ V NK Sbjct: 238 FCGYSQGNRAQAAFFDLDAADPAEFVEASDEAIFAAV--------DATPKIIRGVSTNKA 289 Query: 307 PVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAE---AEPFTPSDNV 363 P L + E L ++ E P R +V A A +P P V Sbjct: 290 PALLEHTAPSEEH-----------LRRAAVIAEAPAFRLRVGAAMAARFVEDPDAPPKPV 338 Query: 364 DAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAE 423 + Q+Y F+S+AD+ ++ + + D R+ +L A + P L E Sbjct: 339 ERQIYGEFYSNADKQLLQEFQHATWPRRQEIVASLTDPRLRQLGRRLVAFHSPELLSSEE 398 >UniRef50_A3XEM3 Exonuclease I n=3 Tax=Rhodobacteraceae RepID=A3XEM3_9RHOB Length = 459 Score = 364 bits (934), Expect = 4e-99, Method: Composition-based stats. Identities = 119/439 (27%), Positives = 187/439 (42%), Gaps = 31/439 (7%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F+F+D ET G P D+P QFAAI TD F V + C+ A LP P A+++T +T Sbjct: 3 FVFYDLETTGISPEFDQPLQFAAIWTDENF-VEKDRVNIRCRLAPHILPSPQALVVTRVT 61 Query: 71 PQEARAKGENE-AAFAARIHSLFTVPKTCI-LGYNNVRFDDEVTRNIFYRNFYDP-YAWS 127 P + F+ ++ I +GYN ++FD+EV R FY+N YA Sbjct: 62 PDQLIDPSLPSLFEFSQQVAEFTERWAPAIWVGYNTMKFDEEVLRQTFYQNLSPNIYATQ 121 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 + + N+R+D+L + A Y P + WP +D G SF+L+ L ANG NAHDA+ DV Sbjct: 122 F-NGNTRFDILPAVYAAYVRHPGLLVWPTDDTGRRSFKLDRLAPANGFNAHNAHDALGDV 180 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 247 ATI +A+L+ TR P L+ L + +K ++ A ++ +P V+ FG + Sbjct: 181 EATIHIARLIATRSPALWSELIDNAHKARVQAKLE--SFRPYELVT-RFGGGEPRSYVGC 237 Query: 248 PLAWHPENRNAVIMVDL-AGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKC 306 + N DL A D S L + + + D ++ V NK Sbjct: 238 FCGYSHGNSAQAAFFDLDAADPSEFLGASDEAIFAAV--------DATPKIIRGVSTNKA 289 Query: 307 PVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAE---AEPFTPSDNV 363 P L + E L I+ P+ +V A A + P V Sbjct: 290 PALLEHTAPSAEH-----------LHRATIIANAPEFLRRVGAAMANRFVEDSDAPPKPV 338 Query: 364 DAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAE 423 + Q+Y F+S AD+ ++ + + D R+ +L A P L E Sbjct: 339 ERQIYGEFYSSADKQLLQEFQHATWPRRQEIVASLSDPRLRQLGRRLVAFYSPELLTADE 398 Query: 424 QQRWLEHRRQVFTPEFLQG 442 + + R ++ + Sbjct: 399 MALFKAYLRDKWSAPDVPE 417 >UniRef50_B6J811 Exodeoxyribonuclease I n=7 Tax=Gammaproteobacteria RepID=B6J811_COXB1 Length = 458 Score = 340 bits (871), Expect = 8e-92, Method: Composition-based stats. Identities = 123/477 (25%), Positives = 205/477 (42%), Gaps = 41/477 (8%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 + T+LF+D ET G + D+ QFAAIRTD N + E+ + D +P P A+ Sbjct: 2 SNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNRHEIL-IRLNPDVIPSPEAM 60 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 +I + + G+ E IH P T +GYN + FDDE R FYRN PY Sbjct: 61 IIHRFSIDQML-SGKAEIEAIREIHQSVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPPY 119 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 + + R DL + Y +P +NWP+ D +LE+L+KAN + AH+AM Sbjct: 120 THQYDNFCGRMDLYPLTILYYLFKPNALNWPDPFD----LKLENLSKANQLAEGQAHNAM 175 Query: 185 ADVYATIAMAKLVKTRQP--RLFDYLFTHRNKHKLMALIDVPQMKPL------VHVSGMF 236 DV A++A+AKL+ ++ R F + + + ++ + + V + G+F Sbjct: 176 VDVEASVALAKLLMNQEAMWRYVIGYFDKKTETQRLSQLPIGIQSTFGSHHEGVLIQGVF 235 Query: 237 GAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAV 296 GA + V L H +N + + L D LL D++ + Y + +G+ V Sbjct: 236 GAQLAYQAPVICLGQHNHYKNQCLWLRL--DREELLSTTVDSIPQTTYAIRKKMGEQPIV 293 Query: 297 PVKLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAE- 355 P + L E RL + ++ K L + Q+ + + Sbjct: 294 L---------PASDRYLRLSEE---RLQL----ATESKKWLESHSQLFHHIFDYYQNFTY 337 Query: 356 PFTPSDNVDAQLYN-GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARN 414 P P+ + DA LY GF + + + P + + F + F R+ Sbjct: 338 PKVPNLDPDAALYEVGFPTPYEDFLSQRFHLAPPAEKEKIALEFPNPIRRNQAFRLIERH 397 Query: 415 FPGTLDYAEQQRWL---EHR-RQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 +P L Q R L ++R + T E ++++ L Q+ + D+E++ LL L Sbjct: 398 YPDYLPAETQARSLGLCDYRGERRLTRETA---FNQIESLKQEKSLDQEQLRLLDEL 451 >UniRef50_D0RRC0 Exodeoxyribonuclease I n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RRC0_9RICK Length = 473 Score = 340 bits (871), Expect = 8e-92, Method: Composition-based stats. Identities = 107/468 (22%), Positives = 195/468 (41%), Gaps = 30/468 (6%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 ++F+D+ET G D+ Q AI + F+++ E C +P+PGA+L+ Sbjct: 2 NYVFYDFETTGRSSTWDQIIQVGAILVNDTFDILDRFEA-RCSLKPGTVPEPGALLVNKT 60 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKT-CILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 TP + + + F +GYN++ FD+E R F+++ D Y + Sbjct: 61 TPDMLKKTNLSHFGMVQMMKETFEKWSPAMFIGYNSLSFDEEFLRKTFFKSLTDVYLTN- 119 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 + N R D+L ++R+ + PE + P ++ G F+L+ + NGI H NAHDAM DV Sbjct: 120 TNGNKRGDILGLVRSAHLYYPECLKTPISEKGNAVFKLDQIASMNGISHDNAHDAMGDVL 179 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 AT+ MAK++ + P ++ +K + ++ Q + L V+ F + V+ Sbjct: 180 ATMGMAKIIADKAPSVWKASLMTMSKQDVGNIV---QKEKLFCVNEYFYG-KARPFVVSF 235 Query: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308 + HP N DL D ++D TL++ + + ++ V NK P+ Sbjct: 236 VCNHPVY-NWPQCFDLKNDPEDYFKMDMSTLKDAMKKS--------PKLLRSVKDNKHPI 286 Query: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDN------ 362 + N D + I + + +++N + +KV AI E + Sbjct: 287 IMNPNYATNFDTYK-QIGISKLNERAEKIKQNEEFGKKVSAILQEEAQEKQDLDSQLDVQ 345 Query: 363 VDAQLYNGFFSDAD-RAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421 + +Y+G F D + A+K + E ++ + D+R P + Sbjct: 346 AEESIYSGGFPDDKTKMALKEFQKAEWKDRLVIADKMKDERYNYFAKRLMYEEAPDIMPK 405 Query: 422 A---EQQRWLEHRRQVFTPE---FLQGYADELQMLVQQYADDKEKVAL 463 E R + R E + +EL L +Y +D ++ L Sbjct: 406 DLYNEIHRGIAKRILSTNDEKWNTIPKAYNELDSLRAKYEEDGDEERL 453 >UniRef50_Q07NS2 Exodeoxyribonuclease I subunit C n=5 Tax=Alphaproteobacteria RepID=Q07NS2_RHOP5 Length = 490 Score = 326 bits (835), Expect = 1e-87, Method: Composition-based stats. Identities = 98/396 (24%), Positives = 168/396 (42%), Gaps = 19/396 (4%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F+F D ET G D+ FAAIRTD++ N EV + +P P A+ ++ Sbjct: 3 FVFFDTETTGLRHGFDQIVHFAAIRTDNDLNETDRFEV-RSRLLPHVVPHPSALRTNRLS 61 Query: 71 PQEA-RAKGENEAAFAARIHS-LFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 + + I L + +GYN++RFD+E+ R+ ++ + Y S Sbjct: 62 IERLIDGTLPSHYEMVRAIQRTLLAWSPSIFVGYNSIRFDEEMLRHALFQTLHPAYLTS- 120 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 + N R D L ++ A L P + P +G P FRL+ L N ++H AHDAMADV Sbjct: 121 NNGNCRADALGLIMAAATLSPACLVVPLGPEGRPIFRLDQLASVNDLKHDQAHDAMADVA 180 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 AT+ + +LV+ R P L+ K + ++ ++ F + + + V Sbjct: 181 ATLDLCRLVRERAPELWQRFIRFSKKATVGDFVESEDG---FFLTEFF-SNQAYHAPVVC 236 Query: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308 L P+ N + + L L + + L+ L PV+ + IN P Sbjct: 237 LGPDPDQPNGRLCLRLDVPPEELALMPDEALQAYLSAK--------PSPVRRLRINASPT 288 Query: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIF-AEAEPFTPSDNVDAQL 367 L + D G + D + L+E+ R ++++++ A E F PS +V+ Q+ Sbjct: 289 LTAFH--DAPDLMLNGADLDELEDRARRLKEDAAFRSRIISLYVAVRESFAPSLHVEGQI 346 Query: 368 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRI 403 Y+G D + E ++ D+R+ Sbjct: 347 YDGLLGPDDERRIADFHEASWLEALSIVRDLDDERL 382 >UniRef50_B4WCZ9 Exonuclease family n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WCZ9_9CAUL Length = 476 Score = 322 bits (826), Expect = 2e-86, Method: Composition-based stats. Identities = 100/396 (25%), Positives = 171/396 (43%), Gaps = 20/396 (5%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F+F+D ET G D+ QFAAI TD + N + E C+ +P P A+L ++ Sbjct: 3 FVFYDTETTGLSKGFDQIVQFAAIHTDGDLNELDRFE-LRCRLQPHVVPHPKAMLANRLS 61 Query: 71 PQ-EARAKGENEAAFAARIHSLFTVPK-TCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 + + I + +GYN++RFD+E+ R+ F++N + Y S Sbjct: 62 IERLTDLSLPSHYDMVREIRRRLSGWGRGIFIGYNSIRFDEEMLRHAFFQNLFPAYLTS- 120 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 R D + ++ A + P DG +FRLE + ANG+ AHDAMAD Sbjct: 121 TPGCGRADAMHIVLTACADASACLTLPLAADGRKTFRLEAVAAANGLNVDAAHDAMADAQ 180 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 T+A+ + V + P ++ NK + L+ +PL ++ +G + + VA Sbjct: 181 MTLALCRRVASEAPEIWSRAIRTSNKAAVADLV---ASEPLFILTEFYG-FEASHRVVAC 236 Query: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308 L N N + DLA D + ++L +D L + + P++ + N P Sbjct: 237 LGPEAGNPNGRLCWDLASDPAEAVQLQTDDLAALISQREG--------PLRRLKTNAAPA 288 Query: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTP-SDNVDAQL 367 +A + PED ++ + L+ NP++ +++ A +P S +V+ QL Sbjct: 289 IAMSWDA-PEDWALGDVDEA--ERRAEWLQANPELSSRIIEAQAARWANSPLSPHVELQL 345 Query: 368 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRI 403 Y+ F D D M + +F D R+ Sbjct: 346 YDRFPDDDDLRLMADFHGAPKIRQREIVDSFADVRL 381 >UniRef50_C0B120 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=C0B120_9ENTR Length = 274 Score = 316 bits (811), Expect = 8e-85, Method: Composition-based stats. Identities = 156/265 (58%), Positives = 207/265 (78%), Gaps = 1/265 (0%) Query: 204 LFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVD 263 +FDY F R+K K+ ALID+P M P+VHVSGMFGA R N S VAPLAWHP+NRNAVI+ D Sbjct: 1 MFDYFFNLRDKRKVQALIDIPAMTPIVHVSGMFGAARSNLSLVAPLAWHPDNRNAVIVCD 60 Query: 264 LAGDISPLLELDSDTLRERLYTAKTDLG-DNAAVPVKLVHINKCPVLAQANTLRPEDADR 322 L+ DISPLL L SD LRERLYT +++L D VP+KL+HINKCP++A NTLRP+DADR Sbjct: 61 LSADISPLLTLTSDQLRERLYTPRSELAVDEPPVPIKLLHINKCPIVAPQNTLRPQDADR 120 Query: 323 LGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKI 382 +G++ CL+N IL +P++R KVV +FA+ PF SD+VD+Q+YNGFFS+ DR+AM+I Sbjct: 121 IGLDVDTCLNNQAILFSHPEIRNKVVELFAQQTPFVVSDDVDSQIYNGFFSENDRSAMEI 180 Query: 383 VLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQG 442 + T+P+NLPALD+TF D R+E L F YRARN+P TL+Y EQQRWL HR+++ TPE L Sbjct: 181 IRSTQPQNLPALDLTFEDARMEPLFFRYRARNYPSTLNYDEQQRWLAHRKEMLTPEKLNE 240 Query: 443 YADELQMLVQQYADDKEKVALLKAL 467 Y + +Q+L ++Y+D++EK+ L+ L Sbjct: 241 YINTIQLLAEKYSDNEEKLKQLQEL 265 >UniRef50_A1ZTJ0 Exodeoxyribonuclease I, putative n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZTJ0_9SPHI Length = 487 Score = 309 bits (792), Expect = 2e-82, Method: Composition-based stats. Identities = 107/474 (22%), Positives = 178/474 (37%), Gaps = 42/474 (8%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 + +F+D + G +P D+ + TD FN++ E K D +P P A++ Sbjct: 19 KNKNLVFYDTRSSGDNPVFDQILRADTYVTDHAFNLL-ETHHIEIKKRPDVVPSPEALIA 77 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 P + AKG E IH LF P + +GY N+ DD + R FYRN PY Sbjct: 78 NNWLPSDL-AKGSTEYEAMRHIHELFNTPHSYNVGYGNLNNDDLLVRFGFYRNGLTPYTH 136 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 WQ R DL ++ Y P + + +N G S L+ + +ANG+ + Sbjct: 137 QWQRSCRRVDLRTIVTLYYLQAPNALVFSKNAAGKVSLELDDIAQANGL---TVGKGATN 193 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMK-----PLVHVSGMFGAWRG 241 + +AKL+ P L++ +K + + Q + + V GA G Sbjct: 194 AQTIMELAKLLHNANPMLWEQALGFFDKKEDQNRVKAAQGQIEGVNGALLVDAQLGADAG 253 Query: 242 NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLV 301 V L ++ + V + D L L++ L R + K L D + L Sbjct: 254 FQQPVHVLGQVGKDVHYVPL-----DDPDLSTLNTKNLESRFWVQKKKLTDEKLL---LN 305 Query: 302 HINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD 361 ++ P + DA R + N + NP + +++ + + F + Sbjct: 306 WKHRDPAVF--------DAARGAL----IKRNAAFVANNPNLMQQLGE-YVAGKSFAHRN 352 Query: 362 NV--DAQLY-NGFFSDADRAAMKIVLETEPRNL-PALDITFVDKRIEKLLFNYRARNFPG 417 NV DAQLY GF++ ++ E + T +R + RNF Sbjct: 353 NVDLDAQLYQGGFWATNEKRFFAEFHEAPNAQEKMQVVNTAPTQRTAAIGQRILYRNFVH 412 Query: 418 TLDYAEQ-QRWLEHRRQVFTP----EFLQGYADELQMLVQQYADDKEKVALLKA 466 + W P L+ Y + ++++ D E ALL A Sbjct: 413 DMGALGMTTDWQRFIADSVAPVSDLATLKDYKGGRKRSIERFLADAE--ALLNA 464 >UniRef50_A2R5F8 Remark: it is assumed (Fragment) n=1 Tax=Aspergillus niger CBS 513.88 RepID=A2R5F8_ASPNC Length = 298 Score = 307 bits (787), Expect = 5e-82, Method: Composition-based stats. Identities = 175/175 (100%), Positives = 175/175 (100%) Query: 39 EFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTC 98 EFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTC Sbjct: 124 EFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTC 183 Query: 99 ILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPEND 158 ILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPEND Sbjct: 184 ILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPEND 243 Query: 159 DGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRN 213 DGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRN Sbjct: 244 DGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRN 298 >UniRef50_A4IYM7 Exonuclease n=19 Tax=Francisella RepID=A4IYM7_FRATW Length = 482 Score = 305 bits (781), Expect = 2e-81, Method: Composition-based stats. Identities = 121/502 (24%), Positives = 197/502 (39%), Gaps = 68/502 (13%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 T LF+D ET G + + D+ QFAAIRTD +FN I F+ K D P P A + Sbjct: 3 SNQTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERF-NFFVKLNPDTTPSPMATIT 61 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 I+ +A G E +IH + P T +GYN + FDDE R FY+N PY+ Sbjct: 62 HHISIAQANT-GIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPYSH 120 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPEN-----DDGLPSFRLEHLTKANGIEHSNAH 181 +++ SR DL ++ Y E +NWP+ + N AH Sbjct: 121 QFKNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGRAH 180 Query: 182 DAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKH---KLMALIDVP------QMKPLVHV 232 DA+ DV T+ +AK ++ P+++ +L NK + +DV + K + V Sbjct: 181 DAITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAIAV 240 Query: 233 SGMFGAWRGNTSWVAPLAWHPENRNAVIMVD----LAGD-ISPLLELDSDTLRERLYTAK 287 SG+FG+ S + L H +N I + L D I L+++ R L Sbjct: 241 SGIFGSKNNFISAILDLGQHRHYKNQEIFLRLDSCLFSDFIDEFGSLEAEHWRLTLNKKW 300 Query: 288 TDLGDNAAVPVKLVHINKCPVLAQANT--LRPEDADRLGINRQHCLDNLKILRENPQVRE 345 D+ P++ A T + +R+ + N + +R NP+ Sbjct: 301 GDI----------------PIILPAKTRFVGKLPQERIEL----IKANKEFIRNNPETFA 340 Query: 346 KVVA-IFAEAEPFTPSDNVDAQLY-NGFFSDADRAAMKIVLET----EPRNLPALDITFV 399 V + P + + DA +Y + F S AD + + L L ++ Sbjct: 341 NFVEYVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLPKSYY 400 Query: 400 DKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPE--------------FLQGYAD 445 D+ R L Q + ++ ++ + + L+ Sbjct: 401 DR-----AVRIIGRLDFSKLPAKAQIEFQDYLNKIVSLDSDELLIDHKGKTRKTLEDIYQ 455 Query: 446 ELQMLVQQYADDKEKVALLKAL 467 E++ L Y +E+ ALL L Sbjct: 456 EIEDLRMNYDLTEEQQALLYEL 477 >UniRef50_A4GJC0 Exodeoxyribonuclease I n=1 Tax=uncultured marine bacterium EB0_49D07 RepID=A4GJC0_9BACT Length = 469 Score = 286 bits (732), Expect = 1e-75, Method: Composition-based stats. Identities = 90/472 (19%), Positives = 177/472 (37%), Gaps = 32/472 (6%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 S +F+D ET G + Q +I+T+ ++ E + C P +P P A++ Sbjct: 4 SSNLIFYDTETTGLLKDFSQILQCGSIQTNRSLEILHE-QNLGCAPLPWAIPYPMAMVTN 62 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVP----KTCILGYNNVRFDDEVTRNIFYRNFYDP 123 T + ++ + + +N + +D+E+ R FY N ++ Sbjct: 63 KKTN--LFHSNVSHYELMRDLNRQWRQWTIDEPAVFITFNGMAYDEELVRRQFYWNLFES 120 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG-LPSFRLEHLTKANGIEHSNAHD 182 Y + + N R D+L +M A P+ +N P D G S + + +ANGIE +AHD Sbjct: 121 YLTN-TNGNGRLDILLMMNNVAAFSPDVLNIPLFDGGPGISLKQADIAEANGIEIGDAHD 179 Query: 183 AMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGN 242 A+AD I + + + ++P L D+ + K + A ++ P L V +R Sbjct: 180 AIADCKLMIGLLEKINAKKPELIDFFLSISTKPGIQAAVEHPGFLALGEV------FRRE 233 Query: 243 TSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVH 302 + + N ++ DL+ + + E+D+ + + + P K Sbjct: 234 IFKYPVVPCGSKAPNDLMFFDLSFEPEEIFEMDTQEIYSLVQKP------GKSGPFKKYG 287 Query: 303 INKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAE--AEPFTPS 360 INK + ++ + +D I+ + +REN + V A+ Sbjct: 288 INKTIPVCPSSMIDNKDI--FDIDFEVLEKRAAQVRENTDFQALVSQAMADKIDNWNNEY 345 Query: 361 DNVDAQLYNGFFSDA-DRAAMKIVLET-EPRNLPALDITFVDKRIEKLLFNYRARNFPGT 418 D+++ +Y G F D+ M + D+R + +P Sbjct: 346 DHIEQMIYAGGFPSKQDKELMADFHRIDSAEERIKICRNITDERHRLFAERLICQFYPQE 405 Query: 419 LDYAEQQRWLEHRRQVFTPE----FLQGYADELQMLVQQYADDKEKVALLKA 466 R+ Q + + EL+ L+++ + E +L+ Sbjct: 406 APEDMMNRYQSLITQRLNEDGPWGSMSKVMTELEKLLEK-DNSTETQTILED 456 >UniRef50_UPI0001911F1B exonuclease I n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. M223 RepID=UPI0001911F1B Length = 228 Score = 280 bits (717), Expect = 6e-74, Method: Composition-based stats. Identities = 203/220 (92%), Positives = 211/220 (95%) Query: 248 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 307 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAK DLGD+AAVPVKLVHINKCP Sbjct: 1 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCP 60 Query: 308 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 367 VLAQANTLRPEDADRLGINRQHCLDNLK+LRENPQVR+KVVAIFAEAEPF SDNVDAQL Sbjct: 61 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFATSDNVDAQL 120 Query: 368 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 427 Y+GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD AEQQRW Sbjct: 121 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 180 Query: 428 LEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 LEHRRQV TPEFLQ YA+ELQML QQYA+DK K+ LLK+L Sbjct: 181 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSL 220 >UniRef50_A4V7F6 Putative exodeoxyribonuclease n=1 Tax=Pseudomonas fluorescens SBW25 RepID=A4V7F6_PSEFS Length = 465 Score = 278 bits (711), Expect = 3e-73, Method: Composition-based stats. Identities = 85/438 (19%), Positives = 157/438 (35%), Gaps = 34/438 (7%) Query: 13 FHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQ 72 F+D T G PA + ++ ++ + + + + A Sbjct: 7 FYDAITAGKSPAEGQIVRYDSLMCEESLTPQVMEMMVGLRSDVHVDLEAAA---NSELGS 63 Query: 73 EARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDN 132 G +E A +H FT P +G N D R+ FYRN P+ N Sbjct: 64 MDLLSGHSELECARTVHRHFTRPNCLHIGLGNTTRVDPFLRSTFYRNLL-PFPCIGLPGN 122 Query: 133 SRW-DLLDVMRACYALRPEGINWPENDDGLPSFRLEHLT--KANGIEHSNA---HDAMAD 186 S + DL ++RA LRP+ W ++ D + H AN + A D +AD Sbjct: 123 SYYLDLETMLRAINILRPDEYPWADSPDPTNTQSFHHFLMWGANVSGENRAVRLRDLLAD 182 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALI--------DVPQMKPLVHVSGMFGA 238 +A+ P+L + H + + + + D+ P+ V A Sbjct: 183 THASC----------PKLVGHALKHSSLQSIKSALGLEQGEVSDLESATPVYLVHQSLQA 232 Query: 239 WRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPV 298 +G P+ + + + DL DIS L + + + ++ P+ Sbjct: 233 PKGFI-LGLPVGVDITYPDILYVADLESDISQLCNPAITSYQSFVRNPSSN----PNGPL 287 Query: 299 KLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFT 358 + +++ P A + +RP DA RL I+ + LR + ++ Sbjct: 288 VRISLSRFPFCAPLSAIRPADAARLSIDIGLVKRRIAQLRSATLLPSRLKETPVLHLSSQ 347 Query: 359 PSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGT 418 PS +V +++ G FS D+ M+ + + L + D RI +L+ P Sbjct: 348 PS-DVFHRMWAGDFSPKDQVLMQELHQAPMGEWLNLAVGASDGRIYELVVRLLGGIAPEI 406 Query: 419 LDYAEQQRWLEHRRQVFT 436 L ++ + + F+ Sbjct: 407 LTSDQRSEVDGYTQSRFS 424 >UniRef50_Q4FND4 Exodeoxyribonuclease I n=2 Tax=Candidatus Pelagibacter ubique RepID=Q4FND4_PELUB Length = 475 Score = 262 bits (669), Expect = 3e-68, Method: Composition-based stats. Identities = 96/489 (19%), Positives = 178/489 (36%), Gaps = 60/489 (12%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 D E+ + + + I D F + F C+ + +PQ A+++ Sbjct: 2 NLAIWDIESSSANTSWGSIIEVGGILVDPNFKELDRF-NFRCRLPEGEVPQAMALIVNKT 60 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKT-CILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 + + +++ + F +G++N+ FDDE+ RN F+R PY + Sbjct: 61 SVDLLTKGNLSHYQMLSQLEATFKKWSPAMFMGWSNIGFDDEMIRNEFFRGIRYPYITNA 120 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 N R D L+++R +A+ + N G +LE L + NG E S AH A+ D Sbjct: 121 TP-NKRHDGLNIVRGAHAVDESVVKTEINAKGNAVMKLESLARMNGFESSGAHSALFDAE 179 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 T+ + L+K QP+ +D NK + +M L FG + VAP Sbjct: 180 LTVKVLGLIKKNQPQTWDTFLRTANKSDTETIFKTEKMFTLAEYH--FG--KNYRFVVAP 235 Query: 249 LAWHPENRNAVIM-----VDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHI 303 L HP++ I DL D PL ++ L+ + K ++ + Sbjct: 236 L--HPKHCIHPIYQWGQAFDLKIDPIPLFDMSISELKSAIKKLKF---------LRTIRS 284 Query: 304 NKCPVLAQANT-LRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDN 362 NK P++ A+ L+ E ++ + K++ N + + V+ E + Sbjct: 285 NKAPIILDASYGLQVEPYS--NLDPDLIKERAKLVNSNERFSQNVLTALRETAEEKAQFD 342 Query: 363 ------VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKR-------------- 402 + +Y F D A ++ L F D+R Sbjct: 343 SQVDLLAEETIYKKFTPQKDTALFPKWHAASWKDKLILLDKFEDERMVSFGKKIIYQESP 402 Query: 403 --IEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYAD--DK 458 + +F R + E+++W + + E L +Y + D+ Sbjct: 403 ETLPPDMFKTIKRGIAERILSDEKEKW----------WTCKEFYFECDNLRDRYTNEKDE 452 Query: 459 EKVALLKAL 467 +K+ L + Sbjct: 453 KKLKFLDEI 461 >UniRef50_B6BR92 Exodeoxyribonuclease I n=1 Tax=Candidatus Pelagibacter sp. HTCC7211 RepID=B6BR92_9RICK Length = 481 Score = 258 bits (659), Expect = 3e-67, Method: Composition-based stats. Identities = 84/405 (20%), Positives = 165/405 (40%), Gaps = 28/405 (6%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 ++ D ET + I D F + C+ D +P A+ I Sbjct: 3 YVVWDIETDSAQTDWATIIEIGGILLDENFKELERFSA-RCRMPQDRVPSATALCINKSN 61 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCI-LGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 + +++ + F LGY+++ FDDEV R F+++ PY + Sbjct: 62 VDLLTKGNLSHYEMLSQVENKFKEWSPATFLGYSSINFDDEVIRKEFFKSLRKPYLTN-T 120 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 N R D L++++A +A+ + + N G S +LE L + NG E + AH A+ D Sbjct: 121 EGNVRHDALNIVKAAFAIDDDILKTELNAKGNKSMKLESLARLNGFESAGAHSALFDTEL 180 Query: 190 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 249 T+ + L+K +QP ++ +K + LI + + ++ ++ F + APL Sbjct: 181 TVKVLDLIKKKQPDIWTEYLKTSSKVVVENLI---KQENIITLNEYFYG-KSYLYLCAPL 236 Query: 250 ----AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINK 305 HP + ++ DL DI + +L+ + L++ + + L + V NK Sbjct: 237 HPNFCSHPVYKWGQVV-DLKADIEAIQKLNYEDLKKEMKKSPKFL--------RTVKSNK 287 Query: 306 CPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDN--- 362 P++ + D + ++ ++++ N + + + I EA + Sbjct: 288 APIILDKSFALKVDPYK-KLDSSLINKRAELVKTNEKFSKDISNILREAAEEKIETSSQE 346 Query: 363 ---VDAQLYNGFFSDA-DRAAMKIVLETEPRNLPALDITFVDKRI 403 + +Y+G F+ A D+A + + AL F D+R+ Sbjct: 347 DIEPEESIYSGGFTSAKDQALFPKFHNSNWKEKFALLDKFEDERL 391 >UniRef50_C5B4J5 Putative Exodeoxyribonuclease I n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4J5_METEA Length = 491 Score = 204 bits (520), Expect = 5e-51, Method: Composition-based stats. Identities = 96/408 (23%), Positives = 167/408 (40%), Gaps = 35/408 (8%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEA 74 D ET T + FAA+ ++ V + +P GA+ + P Sbjct: 13 DTETSDTDVRHGQIFDFAAVTSNLTDLVETGTRTVRIRRLSYCIPAYGALSTNRLDPYAL 72 Query: 75 RAKGEN-EAAFAARIHSLFT-VPK--TCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 A E + AA IH + + P +LGYN + FD+E+ R F+RN DPYA S + Sbjct: 73 EATDRTDEFSAAASIHGILSPKPGRPLVVLGYNILSFDEEIVRTTFFRNLLDPYATSAK- 131 Query: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190 R+DLL R +AL P+ ++DDG PSFRLE + ANGI AHDA+ D AT Sbjct: 132 GVRRFDLLPAARLAHALDPDAFPAGQDDDGGPSFRLERIAPANGIG-LRAHDALEDARAT 190 Query: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMK--PLVHVSGMFGAWRGNTSWVAP 248 +A+A+ +++ P ++ ++++ + D + P+ ++G GN + P Sbjct: 191 LALARRLRSSVPAAWETCLRASDRYEAERVFDAAAARNEPVWVLAG------GNAPVLEP 244 Query: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308 +N ++++ + ++ +++ +D L DL D N+ PV Sbjct: 245 AYPVGKN-GRLLVLARSSRLAESMQIGADAL---------DLDDWRDGSFIRCRTNRMPV 294 Query: 309 LAQANT------LRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDN 362 + A L P + + + + +V +P P+ Sbjct: 295 VLSAAAAAVLSELHPGAFPVPPGDVRAPGAGWSEFKGA--LASRVADADPWTKPTGPT-- 350 Query: 363 VDAQLYNGFFSDADRAAMKIVLET-EPRNLPALDITFVDKRIEKLLFN 409 + ++Y+GF ++ M+ A F D RI + Sbjct: 351 AEERIYDGFVDWGEKDRMRHFRYLGTWEERAAAFAGFRDSRIREFAAR 398 >UniRef50_UPI0001698261 Exodeoxyribonuclease I n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698261 Length = 142 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 8/132 (6%) Query: 343 VREKVVAIFAEAEPFTPSDNVDAQLYNG-FFSDADRAAMKIVLETEPRNLPALDITFVDK 401 ++ K+ + + + F P + D LY+G FFS+ DR M+ + ET L L F D Sbjct: 1 MQAKISRVH-QMKQFEPQTDPDLSLYSGPFFSEDDRRRMQQIRETPVDQLAGLHFAFDDA 59 Query: 402 RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVF------TPEFLQGYADELQMLVQQYA 455 R+ ++LF YRARN+P TL+ E+QRW E+R+ L Y +L +L Sbjct: 60 RLPEMLFRYRARNWPETLNETERQRWDEYRQTRLFDADGGGAIQLDEYLAQLDLLAADEG 119 Query: 456 DDKEKVALLKAL 467 E+ ALL L Sbjct: 120 LSAERRALLPKL 131 >UniRef50_B8K5Y6 Exonuclease I n=1 Tax=Vibrio parahaemolyticus 16 RepID=B8K5Y6_VIBPA Length = 96 Score = 102 bits (255), Expect = 3e-20, Method: Composition-based stats. Identities = 44/88 (50%), Positives = 60/88 (68%), Gaps = 1/88 (1%) Query: 380 MKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEF 439 M I+ +T+P NL ALDI+F D RI LLF YRARNFP TLD +EQQRW H R F Sbjct: 1 MDIIRQTDPNNLAALDISFNDDRIAPLLFRYRARNFPATLDESEQQRWANHCRDYF-ESR 59 Query: 440 LQGYADELQMLVQQYADDKEKVALLKAL 467 ++ Y L+ LV ++ D++K+A+LK++ Sbjct: 60 IEDYMLNLENLVHEHESDEKKLAILKSV 87 >UniRef50_UPI0001743E3B exonuclease I n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI0001743E3B Length = 106 Score = 100 bits (250), Expect = 9e-20, Method: Composition-based stats. Identities = 24/103 (23%), Positives = 52/103 (50%), Gaps = 3/103 (2%) Query: 351 FAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNY 410 + FTP + +++LY+GF ++ D+ ++V + + F D R++++ Y Sbjct: 4 LLKKPDFTPQADAESKLYDGFINNQDKLRSEVVRNLDQNQIKQYTPEFEDSRLKQIYPRY 63 Query: 411 RARNFPGTLDYAEQQRWLEHRRQVFT---PEFLQGYADELQML 450 +ARN+P L E+ + E+R+ P FL+ ++ ++ Sbjct: 64 KARNYPNALSSDERIEYDEYRKNRLNRQLPGFLKDLTEQSKIT 106 >UniRef50_UPI000169825E exonuclease I n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI000169825E Length = 79 Score = 87.3 bits (215), Expect = 1e-15, Method: Composition-based stats. Identities = 35/53 (66%), Positives = 41/53 (77%) Query: 140 VMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIA 192 ++R +ALRPEGI WP + G PSFRLE LT ANGI H AHDA++DVYATIA Sbjct: 1 MVRLTHALRPEGIEWPSDAAGRPSFRLELLTAANGIAHQAAHDALSDVYATIA 53 >UniRef50_A2SRZ3 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Methanocorpusculum labreanum Z RepID=A2SRZ3_METLZ Length = 228 Score = 70.0 bits (170), Expect = 2e-10, Method: Composition-based stats. Identities = 49/198 (24%), Positives = 78/198 (39%), Gaps = 29/198 (14%) Query: 15 DYETFGTHPALDRPAQFAAIRTDS--EFNVIGEPEVFYCKPADDYLPQPGAVL-ITGITP 71 D ET G +P +DR + AAI+ D +V+ E Y +D P V +TGITP Sbjct: 5 DTETTGLNPKIDRITELAAIKFDKYGNKSVMDE----YISLPNDIC-YPENVQEMTGITP 59 Query: 72 QEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHD 131 + KG E A + P +L +N +FD + + R + Sbjct: 60 EILELKGHPEEEIAWMFAMMLKSPGRVLLVTHNAQFDLRFIQEMLSR-------HRYVFP 112 Query: 132 NSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEH-SNAHDAMADVYAT 190 N W ++D + +P+ RL G++ N+H A+ DV A Sbjct: 113 NG-WGVIDTLTVFRDRKPQ------------PHRLSDAISYYGLDGVKNSHRAIDDVVAL 159 Query: 191 IAMAKLVKTRQPRLFDYL 208 A+ + Q L +Y+ Sbjct: 160 CAVFDAMCQEQNDLDEYI 177 >UniRef50_A6DIP6 Exonuclease n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIP6_9BACT Length = 261 Score = 69.6 bits (169), Expect = 2e-10, Method: Composition-based stats. Identities = 45/189 (23%), Positives = 69/189 (36%), Gaps = 29/189 (15%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 Q +F D ET G +P DR + I+ + G+ ++ + + A IT Sbjct: 6 QRPIVFFDLETTGLNPTEDRIIEICCIKVHPD----GKRDIKTRRVNPEKPISSEASEIT 61 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCIL-GYNNVRFDDEVTRNIFYRNFYDPYAW 126 GIT ++ + +E F ++ + C + GYN +RFD V F R Sbjct: 62 GITDEDVK----DEPTFKQMAKGIYKFFEGCDISGYNIMRFDLRVLTEEFKRAGIS---- 113 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 D S DL+DV R + P + AH A D Sbjct: 114 ---FDASAHDLVDVQRIFHKKEPRTLEAALRFYCKKDLE-------------GAHAAEND 157 Query: 187 VYATIAMAK 195 V ATI + + Sbjct: 158 VIATIDVLE 166 >UniRef50_Q3B5G9 Exonuclease n=3 Tax=Chlorobium/Pelodictyon group RepID=Q3B5G9_PELLD Length = 197 Score = 69.6 bits (169), Expect = 3e-10, Method: Composition-based stats. Identities = 48/199 (24%), Positives = 78/199 (39%), Gaps = 29/199 (14%) Query: 12 LFHDYETFGTHPALDRPAQFAAIRTDSEFN-VIGEPEVFYCKPADDYLPQPGAVLITGIT 70 L+ D ET G P QFA + +E V+ E +P + + + A+ ++G + Sbjct: 5 LWFDLETTGIDPDRHGIIQFAGL---AEIEGVVAESFEIKMQPHEGAMIEDEALAVSGFS 61 Query: 71 PQ-------EARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 + A A + A + K GYN VRFD + +F R YD Sbjct: 62 REQIASFTPHAEAYKAIDGFLARHVSRFERNDKFYPAGYN-VRFDLDFLSRMFRR--YDQ 118 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSF---RLEHLTKANGIEHSNA 180 Y L +L P+ I G S +L+ + + G+ NA Sbjct: 119 Y------------GLGSFINWRSLDPQPILNIMEYMGRLSLPNHKLQTVCEHLGVRLENA 166 Query: 181 HDAMADVYATIAMAKLVKT 199 HDA++D+ AT + +L+ Sbjct: 167 HDALSDIKATRELMELLME 185 >UniRef50_Q1DB51 Exonuclease n=3 Tax=Cystobacterineae RepID=Q1DB51_MYXXD Length = 219 Score = 66.5 bits (161), Expect = 2e-09, Method: Composition-based stats. Identities = 46/200 (23%), Positives = 66/200 (33%), Gaps = 23/200 (11%) Query: 6 KQQSTFLFHDYETFGTHPALDRPAQFAAIRTD-SEFNVIGEPEVFYCKPADDYLPQPGAV 64 T F D ET G + + A +R D V+ E E KP P A+ Sbjct: 26 PHLRTLCFVDLETTGLDASRHEVLEVAVLRVDARSLKVLAEYEA-RVKPTRLADAHPEAL 84 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 + G + +E A + L T + G+N FD F + Y Sbjct: 85 AVCGYSDEE-WRDALPLQEVLATVTPLLA--GTLVAGHNT-SFD-----WGF---LVESY 132 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLP-SFRLEHLTKANGIEHSNAHDA 183 S L + + L + WP G S L L K G+ H A Sbjct: 133 RRSEL-------ALPSVD-YHRLDTASLAWPLLATGEVESLSLNALAKRFGLHRPTPHRA 184 Query: 184 MADVYATIAMAKLVKTRQPR 203 MAD + +A+ + R R Sbjct: 185 MADARCALEVARCLAVRMAR 204 >UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C0FNH3_9FIRM Length = 228 Score = 66.2 bits (160), Expect = 2e-09, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 82/248 (33%), Gaps = 36/248 (14%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 ++ D ET GT D + +A++ V+ E +P A ++ Sbjct: 15 PDYVLFDLETTGTSCIYDEVIEISAVKV-RSGKVVEEFSQLVNPKRP--IPYA-ASMVNH 70 Query: 69 ITPQEARAKGENEAAFAARIHSLFT-VPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 I+ + NE F + T ++G+N FD + R F Sbjct: 71 ISDEMVA----NEPDFGQVLPEFLTFAGDDILVGHNIQTFDMKFLYRDCERLF------Q 120 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 + N D L V + C+ PE W RL L + GI AH A+ D Sbjct: 121 QKLTNDYVDTLRVAKLCF---PE---WRHR-------RLSDLAEHYGISTRGAHRALTDC 167 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 247 + + + ++ K + I P+ +G FG + G + Sbjct: 168 KMNQQVFEYLAKELEKM------PAAKKQSKEKICPECGLPMKKRNGRFGEFWGCIGY-- 219 Query: 248 PLAWHPEN 255 P H EN Sbjct: 220 PDCRHTEN 227 >UniRef50_D1BUD4 DNA polymerase III, epsilon subunit n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BUD4_XYLCX Length = 547 Score = 65.8 bits (159), Expect = 3e-09, Method: Composition-based stats. Identities = 48/185 (25%), Positives = 68/185 (36%), Gaps = 30/185 (16%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F D ET G P DR + A +R D+ + E + GA I GIT Sbjct: 49 FAVVDVETTGLSPRYDRVIEVAILRLDTNGRTVDEWST---RLNPQRTV--GATWIHGIT 103 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD-PYAWSWQ 129 + A + A AA++ T +G+N RFD R +D P W Sbjct: 104 DADV-AHAPSFADVAAQVAQRLT--GAVFVGHNA-RFDAGFVLAELTRAGWDAPEPTIW- 158 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 ++ A + P+ S RL + A GI ++AH A+ D A Sbjct: 159 --CTQA-------ASHHWLPDA----------SSRRLVDVAAAAGISLTHAHSALGDARA 199 Query: 190 TIAMA 194 T AM Sbjct: 200 TAAML 204 >UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae RepID=A7HNS3_FERNB Length = 1390 Score = 65.4 bits (158), Expect = 5e-09, Method: Composition-based stats. Identities = 54/241 (22%), Positives = 85/241 (35%), Gaps = 39/241 (16%) Query: 1 MMND---GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDY 57 MMN+ T++ D ET G +P D + A++T + VI E F +P Sbjct: 370 MMNEIEGNVDDYTYVVLDLETTGLNPRSDEIMEIGAVKT-RDGKVIDEFHTF-VRPNK-- 425 Query: 58 LPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFY 117 ++ ITGIT + + L K IL +N FD +NI Sbjct: 426 -LNKKSLNITGITEDMLKDA----PDIMQVLPKLLEFIKDSILVAHNADFDMTFLKNILS 480 Query: 118 RN---FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANG 174 ++ F PY +D +R AL I SF L+ L G Sbjct: 481 KSGIEFNPPY-------------IDTLRLSQALLRNKIK---------SFSLDKLVDHFG 518 Query: 175 IEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNK--HKLMALIDVPQMKPLVHV 232 + H A+ D T+ + + + F NK + L+ PQ ++ Sbjct: 519 LGAFQHHRALDDARVTVNVFWKLIELAKKKSITTFEKLNKLVENINPLVKHPQHVTVLVR 578 Query: 233 S 233 + Sbjct: 579 N 579 >UniRef50_B9L7M7 Exonuclease n=3 Tax=cellular organisms RepID=B9L7M7_NAUPA Length = 293 Score = 65.0 bits (157), Expect = 5e-09, Method: Composition-based stats. Identities = 58/272 (21%), Positives = 105/272 (38%), Gaps = 41/272 (15%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLP-QPGAVLITGITPQE 73 D ET G + DR Q + + + I E KP LP A+ + IT + Sbjct: 7 DTETTG-NKEEDRIIQLSYLVLNENL-EIEEIHDELVKPP---LPISFEAMAVHHITNEM 61 Query: 74 ARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNS 133 K + + + P+ ++ +N +FD ++ + + NS Sbjct: 62 VEDKPLIKHTESYKRLKELNSPENLLVIHNA-KFDLDMLKKEGF--------------NS 106 Query: 134 RWDLLDVMRACYALRPEG---INWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190 + L+D R L PEG + + GL + + + + I NAHDA+ DV Sbjct: 107 FFKLIDTFRVLKHLIPEGKFSLQYNRYALGL-YKKEKDICEKYNI-QINAHDALGDVIV- 163 Query: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250 + + LF+YL T+ K+ + L+++ KP++H + L Sbjct: 164 LGL----------LFEYLVTNFEKN-VEELVELT-TKPVLH-DKFYQGKYKFEKIKDVLI 210 Query: 251 WHPENRNAVIMV-DLAGDISPLLELDSDTLRE 281 P+ ++ + DL D+ +E + L E Sbjct: 211 KDPDYIEYMLSLTDLDPDVKYSIEHHLENLDE 242 >UniRef50_A7B402 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B402_RUMGN Length = 300 Score = 64.6 bits (156), Expect = 7e-09, Method: Composition-based stats. Identities = 49/178 (27%), Positives = 68/178 (38%), Gaps = 25/178 (14%) Query: 14 HDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQE 73 +D ET G +P D P + D + VI E Y +P + P A I GITP++ Sbjct: 137 YDLETTGVNPWKDEPLSMCIM--DLQGKVIFEH---YFRP-EHTKSWPDAAAIHGITPEK 190 Query: 74 ARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNS 133 + + +I +F ++ YN + FDD P + Sbjct: 191 VANESPMSF-YRDQIQKIFDASD-ILITYNGINFDDSFLEAA---GIKLPEVMQF----- 240 Query: 134 RWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATI 191 DVMR L + W E G +RL G E S AHDA DV AT+ Sbjct: 241 -----DVMREYAWLIHD---WDEYHQGWRWWRLIDCAAYYGYEFS-AHDAAEDVKATL 289 >UniRef50_Q0SVV0 Helicase/exonuclease n=12 Tax=Clostridium RepID=Q0SVV0_CLOPS Length = 870 Score = 64.6 bits (156), Expect = 8e-09, Method: Composition-based stats. Identities = 52/323 (16%), Positives = 118/323 (36%), Gaps = 43/323 (13%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 ++ + ++ + D E+ G D Q AAI+ + V+ + E F Sbjct: 494 LLINEFEKENIIVFDVESTGVDVTEDEIIQIAAIKLNKNVEVVDKFEKFLKNKKS----V 549 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYR-N 119 + + G + + + GE E + ++ + I+G+N V++D + + R N Sbjct: 550 KDSYYVHGFSDEMLQRIGE-EKEKVLKEFVEYSK-DSIIVGHN-VQYDINILCSELERNN 606 Query: 120 FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSN 179 P ++ +D LD+ R Y G +++LE+L+K +H Sbjct: 607 LGKPKFKTF------YDTLDIYRRFY-------------PGNINYKLENLSKVYDTKHKP 647 Query: 180 AHDAMADVYATIAMA-KLVKTRQPRLFDYLFTHRNKH-----KLMALID-----VPQMKP 228 +HDAM D+ AT + + + + +KH + ++ + +P Sbjct: 648 SHDAMDDIIATGELLVRAINEKIKETSMERMALMSKHLKAFTAISKKLNELFQIAERKRP 707 Query: 229 LVHVSGMFGAWRGNTSWVAPLAWHPENRNAVI--MVDLAGDISPLLELDSDTLRERLYTA 286 V+ + G + + + + L D+ + + D L + + Sbjct: 708 YELVACVI---NGFNIKSMYAGDENKEKLNRLRDLYALFRDLDDKSKGNRDALLDIIRIT 764 Query: 287 KTDLGDNAAVPVKLVHINKCPVL 309 G+ ++ + + P++ Sbjct: 765 GLSNGELESLIINRTKKPRIPII 787 >UniRef50_A5I1F6 Helicase, UvrD/REP/exonuclease family protein n=10 Tax=Clostridium RepID=A5I1F6_CLOBH Length = 855 Score = 64.2 bits (155), Expect = 1e-08, Method: Composition-based stats. Identities = 49/214 (22%), Positives = 84/214 (39%), Gaps = 33/214 (15%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 ++ G + D E+ G + D Q A I+ +++ VI + F P+ Sbjct: 485 LLTRGLDNENVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRF-------LTPK 537 Query: 61 P---GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFY 117 + L+ G + Q + GEN+ T I+G+N V FD + + Sbjct: 538 KFVGDSYLVHGFSDQFLKENGENKKVVLKDFLEFI--KDTVIVGHN-VAFDISILNSELE 594 Query: 118 RNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEH 177 R + + +D LD+ R Y P N +LE L+K E Sbjct: 595 R-----LSLEKASFKTYYDTLDIARRFY---PNLTN----------HKLETLSKLFNTET 636 Query: 178 SNAHDAMADVYAT--IAMAKLVKTRQPRLFDYLF 209 ++HDAM D+ AT + MA L + +P + + + Sbjct: 637 KSSHDAMDDILATKDVLMAMLKEKVKPTIINRMV 670 >UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit n=38 Tax=Enterococcus RepID=C2JLR4_ENTFA Length = 929 Score = 63.1 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 64/190 (33%), Gaps = 27/190 (14%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEA 74 D ET GT P DR QF + + +I F + + +TGI+ + Sbjct: 17 DLETTGTDPTSDRIIQFGCVLV-QDGKIIA---NFATDVNPNQVVPKQIQSLTGISNTQV 72 Query: 75 RAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSR 134 + E A I+ T + +N V FD R P Sbjct: 73 QKAPYFE-DVAHTIYHYLE--DTIFVAHN-VHFDYNFLARELVRCGTPPLTIP------- 121 Query: 135 WDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMA 194 +D + P SFRL L+++ G+ H N H A +D T + Sbjct: 122 --AIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQADSDAQVTAELL 169 Query: 195 KLVKTRQPRL 204 L++ + L Sbjct: 170 LLIQEKMKSL 179 >UniRef50_C8WA42 DNA polymerase III, epsilon subunit n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8WA42_ATOPD Length = 342 Score = 63.1 bits (152), Expect = 2e-08, Method: Composition-based stats. Identities = 43/198 (21%), Positives = 73/198 (36%), Gaps = 34/198 (17%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 K +++ D ET G + AA++ + + E +P GA Sbjct: 72 SKYPESYVVVDLETTGLDVHYCEIIEIAALKV-VDGKITEEFSSLI--HPPREIPS-GAT 127 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFT-VPKTCILGYNNVRFDDEVTRNIFYR-NFYD 122 I IT + N I T V ++G+N++R+D V F+R +F Sbjct: 128 AINHITNHMVK----NAPTLDKVIPQFDTFVKGFPLIGHNSLRYDAIVLEENFFRRDFLC 183 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTK-ANGIEHSNAH 181 Y W +D + R L P ++L ++ K N +H AH Sbjct: 184 DYVW--------YDTYKLAR--QILEP-------------PYKLINIAKRLNVKQHGKAH 220 Query: 182 DAMADVYATIAMAKLVKT 199 A+AD Y T + + ++ Sbjct: 221 RALADCYMTYGIYEKMRE 238 >UniRef50_UPI0001BC4EA4 exonuclease n=4 Tax=Fusobacterium RepID=UPI0001BC4EA4 Length = 186 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 47/197 (23%), Positives = 75/197 (38%), Gaps = 22/197 (11%) Query: 12 LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITP 71 L+ D ET G Q AAI I E YC P D A+ IT T Sbjct: 4 LYLDTETTGL-TYRSTIIQLAAIVEIDG--EIKETINLYCAPFPDSDISEEALSITKFTR 60 Query: 72 QEARAKGENEAAFAARIHSLFTV--------PKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 +E + + K ++G+N V+FD ++ RN YR + Sbjct: 61 EEIFQFDSPQVVC-QTFTQILGKYVDKYNKNDKFIVIGHN-VKFDLDMLRNWAYR-CNER 117 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDA 183 + S+ + +D L + L P+ ++ +LE L +A I NAH+A Sbjct: 118 FIASYIDFKNEFDTLAFTKCLKILG----RLPQTENN----KLETLCQAFQIPLENAHNA 169 Query: 184 MADVYATIAMAKLVKTR 200 +AD A + ++ + Sbjct: 170 LADTIAAKDLYHYLQNK 186 >UniRef50_A9NGM6 DNA polymerase III, epsilon subunit n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NGM6_ACHLI Length = 227 Score = 62.7 bits (151), Expect = 3e-08, Method: Composition-based stats. Identities = 43/220 (19%), Positives = 86/220 (39%), Gaps = 33/220 (15%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTD---SEFNVIGEPEVFYCKPAD--DYLPQP 61 + L D+ET G P D+ + A+ + + ++ E + + D++ Sbjct: 4 EYKKILVFDFETTGLTPKRDKVIEVGAVLLEKIGDTYEIVQEIDYLIKQQTPITDFISN- 62 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 +TGIT + G E +A R T ++ YN + FD + Y+ + Sbjct: 63 ----LTGITNEMLARDGVEE-EYAFRQLDNLIDEDTLLVAYN-LAFDIGFL-SALYQTYV 115 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 A +++ N D+LD C A+ + +P +LE+ + ++ AH Sbjct: 116 ---AHNYKIQN---DILD----CMAVYKDRYPYPH--------KLENAVARFELSNNQAH 157 Query: 182 DAMADVYATIAMAKLVKTRQP--RLFDYLFTHRNKHKLMA 219 A D AT + + + + +L+ + + K+ L Sbjct: 158 RASEDAKATFKVLDCLASEENNLKLYVNVLGYNKKYGLPD 197 >UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N2X3_9BACT Length = 185 Score = 62.3 bits (150), Expect = 4e-08, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 63/198 (31%), Gaps = 29/198 (14%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F D ET G P DR + AA+R D + G F AV + IT Sbjct: 9 FTIFDVETTGMSPVRDRIVELAAVRVDRD----GSLSRFQSLVNPGVRIPAQAVAVHHIT 64 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 G A F T + +N RFD + R W + Sbjct: 65 DDMVA--GAPSFARMGLDFLEFASESTLVA--HNARFDLGFLQESLARTGLP--LWKGKT 118 Query: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190 LD +R P + F+LE N AH A ADV T Sbjct: 119 -------LDSLRLLKTTFPN-LPSYNLQSLRAYFQLETEKGMN------AHRAGADVEWT 164 Query: 191 -----IAMAKLVKTRQPR 203 IA++K ++ P+ Sbjct: 165 RQVLEIALSKAIRMSAPQ 182 >UniRef50_UPI0001698260 exonuclease I n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698260 Length = 60 Score = 61.5 bits (148), Expect = 6e-08, Method: Composition-based stats. Identities = 25/56 (44%), Positives = 33/56 (58%), Gaps = 1/56 (1%) Query: 270 PLLELDSDTLRERLYTAKTDLGDN-AAVPVKLVHINKCPVLAQANTLRPEDADRLG 324 PLLELD + + +RL+T DL + +P+K VH+NKCPVL NTL L Sbjct: 2 PLLELDDEQIHQRLFTPTADLPEGVERIPLKTVHLNKCPVLVPTNTLTGGSGGALA 57 >UniRef50_C7G6P2 DNA polymerase III PolC-type n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G6P2_9FIRM Length = 228 Score = 61.5 bits (148), Expect = 7e-08, Method: Composition-based stats. Identities = 45/207 (21%), Positives = 70/207 (33%), Gaps = 33/207 (15%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 +F D ET G P D+ + AA N I +CK + V +T Sbjct: 5 KKIVFFDTETTGLDPEKDQIIELAAALVTE--NGIELKIDAFCKLPEGEKIPEKIVELTH 62 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 IT KG + ++ +L +N++FD +F R P A Sbjct: 63 ITDDMLADKGIDYREACRIFCNMLHSDSEVLLVAHNIQFDLLFILEMFKRCGMVPKA--- 119 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEH-------SNAH 181 +RA + + ++ P AN IEH N+H Sbjct: 120 ----------PKLRAL-----DSLTVYKDRAAYPHK------LANAIEHYGLADKVQNSH 158 Query: 182 DAMADVYATIAMAKLVKTRQPRLFDYL 208 A+ DV A + K + + L DY+ Sbjct: 159 RAIDDVLALYEVTKAMSEERDDLTDYI 185 >UniRef50_C0ECE2 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0ECE2_9CLOT Length = 865 Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 43/182 (23%), Positives = 68/182 (37%), Gaps = 25/182 (13%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 + D E+ GT + D Q AA+R D V+ E + P + + Sbjct: 497 KNVVVFDVESTGTDTSSDEIIQIAAVRIDETGRVLRSFE----QLLHPSKPVGQSEAVHH 552 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 + +G A S ++G+N V FD + + R P + Sbjct: 553 FSDALLAERGGEPPQVLAEFCSFVR--GAVVVGHN-VGFDLTILASELSRLGLPPAEYE- 608 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 +D LD+ R Y P+ LP+ +LE L+K E ++HDAM D+ Sbjct: 609 ----EYYDTLDLARRFY---PD----------LPNHKLETLSKLLDTEVKSSHDAMDDIL 651 Query: 189 AT 190 AT Sbjct: 652 AT 653 >UniRef50_Q03C57 3'-5' exonuclease and CRISPR-associated protein cas2 n=3 Tax=Lactobacillus RepID=Q03C57_LACC3 Length = 301 Score = 61.2 bits (147), Expect = 8e-08, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 68/190 (35%), Gaps = 27/190 (14%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F+ D ET G D A++ N + LP A L TG++ Sbjct: 130 FVALDIETTGLDAERDAIIAIGAVK-GPSVNETEKFTTLVNPRRP--LPSTVAKL-TGLS 185 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 +E A G + + + FT +GYN +RFD + Sbjct: 186 AEELVANGISLSEAVQAL-RDFTGSLPL-VGYN-LRFDMGFLSAAGRETGLTSF------ 236 Query: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190 N +DLL +++ ++L + I++ H A++D AT Sbjct: 237 GNQTFDLLPLVKKSSRFLDN-------------YKLSTVLAHYQIDNEQPHHALSDATAT 283 Query: 191 IAMA-KLVKT 199 +A+A KL+K Sbjct: 284 MALADKLIKK 293 >UniRef50_UPI0000D537B4 Exodeoxyribonuclease I n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D537B4 Length = 212 Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 78/202 (38%), Gaps = 34/202 (16%) Query: 288 TDLGDNAAVPVKLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKV 347 + +++ ++ V NK VL ++ + I + +KIL NPQ E + Sbjct: 7 SKALESSPKIIRTVKCNKSLVLLNSDYA-MKTQKYSEIGLEEIHRRVKILDNNPQFIELI 65 Query: 348 VAIFAEAEPFTPSDNVDAQL------YNGFFSDADRAAMKIVLETEPRNLPALDITFVDK 401 +I ++ S + L Y GF + D+A MK E + + L F ++ Sbjct: 66 GSILSDKAQQKMSMDQTELLFEETIYYGGFAKEKDKAVMKKFHEVDWKEKVNLIDKFSEE 125 Query: 402 R----------------IEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAD 445 R + K +FN R+F L +++W + + Sbjct: 126 RFQYFAKCLIYEESPESLPKSIFNEINRSFAQRLLSKNKEKWE----------TIPSFYS 175 Query: 446 ELQMLVQ-QYADDKEKVALLKA 466 E+ L + +Y DD+E + L++ Sbjct: 176 EVDTLRELKYQDDEEMLELIEQ 197 >UniRef50_C9KN36 Helicase, UvrD/REP/exonuclease family protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN36_9FIRM Length = 874 Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 42/196 (21%), Positives = 72/196 (36%), Gaps = 27/196 (13%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPE-VFYCKPADDYLPQPGAVL 65 + + D E G P D Q A +R + E + + + + + Sbjct: 509 EAENIVVFDVEATGVDPTRDEIIQIAGLRLGRDGKAKAEFKRLLRARRSVG-----DSYR 563 Query: 66 ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA 125 + I+ + +GE E R F I+G+N V +D + + R P + Sbjct: 564 VHKISDAILQQEGE-EPEAVLREFCAFAE-GAVIVGHN-VTYDLSILGSELARLGLPPLS 620 Query: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMA 185 + +D LD+ R Y P LP+ +LE+L + + H + HDAM Sbjct: 621 YQ-----RYYDTLDIFRRFY---PN----------LPNHKLEYLGEFCKVSHRSTHDAMD 662 Query: 186 DVYATIAMAKLVKTRQ 201 DV AT + + Sbjct: 663 DVCATAEILTYAIEKN 678 >UniRef50_B4S7Q3 Exonuclease RNase T and DNA polymerase III n=1 Tax=Prosthecochloris aestuarii DSM 271 RepID=B4S7Q3_PROA2 Length = 189 Score = 60.8 bits (146), Expect = 1e-07, Method: Composition-based stats. Identities = 53/199 (26%), Positives = 77/199 (38%), Gaps = 25/199 (12%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAA-IRTDSEFNVIGEPEVFYCKPADDYLPQPGA 63 Q L+ D ET GT+PA Q A I D V+ E C P + P A Sbjct: 1 MNQHKKVLYCDVETTGTNPAKHGIIQIGAIIEVDG---VVVEECNLKCAPHEGAEISPDA 57 Query: 64 VLITGITPQEARAKGENEAAF-------AARIHSLFTVPKTCILGYNNVRFDDEVTRNIF 116 + I+G E ++ + A+ + I K GYN + FD + Sbjct: 58 LAISGTERSELESRMTSHEAYTQFRHFLSRHIEQYDREDKCYPAGYN-IHFDLNFI-QAW 115 Query: 117 YRNFYDPYAWSWQHDNSRW-DLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGI 175 +R+ D Y N R D L ++ I LP +RLE + + GI Sbjct: 116 FRHHGDKYG-IGSFINWRMLDPLPLLF---------IKDFTRQITLPDYRLETVCRHFGI 165 Query: 176 EHSNAHDAMADVYATIAMA 194 +AHDAM+D+ AT + Sbjct: 166 A-LHAHDAMSDIRATRELL 183 >UniRef50_Q6KIN3 DNA polymerase III alpha subunit n=1 Tax=Mycoplasma mobile RepID=Q6KIN3_MYCMO Length = 1433 Score = 60.4 bits (145), Expect = 1e-07, Method: Composition-based stats. Identities = 44/214 (20%), Positives = 75/214 (35%), Gaps = 35/214 (16%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFN-VIGEPEVFYCKPADDYLPQPGAVL 65 + T++ D ET G P D +F A + N + + F+ KP + L Sbjct: 396 KNETYVVFDLETTGLSPIFDDIIEFGAQKI---LNGKVIDTLQFFVKPNKEI--SEKITL 450 Query: 66 ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA 125 ITGI Q+ +E +I F T + +N FD NF + Sbjct: 451 ITGIKNQDVEN-AISEKEALKKILE-FMGDHTVVA--HNATFD---------MNFINEKI 497 Query: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGI--EHSNAHDA 183 + S ++D + + PE F LE+L +GI + AH A Sbjct: 498 EKYNFQESNLQIIDTLVVSKIIEPEA----------KKFSLENLASRSGIIYNSTEAHRA 547 Query: 184 MADVYATIAM----AKLVKTRQPRLFDYLFTHRN 213 D + + + + FD ++ ++ Sbjct: 548 DYDADVLAKVWNLYIQKLSDMNVKYFDDIYNFKS 581 >UniRef50_UPI0001693F5B Exonuclease RNase T and DNA polymerase III n=3 Tax=Paenibacillus larvae subsp. larvae BRL-230010 RepID=UPI0001693F5B Length = 203 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 42/201 (20%), Positives = 63/201 (31%), Gaps = 40/201 (19%) Query: 14 HDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQE 73 D ET G P D+ + AAIRTD G P V +TGI+ Sbjct: 8 FDLETTGLDPTKDQITEIAAIRTDL-IREYGR-LDIRITKNSGTKLTPEIVNLTGISESM 65 Query: 74 ARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNS 133 G E + + T ++ + + P+ Sbjct: 66 M-RGGVPEPVAIMLLSCFMS--GTIVVAH------------------HAPF--------- 95 Query: 134 RWDLLDVMRACYALRPEGINWPENDDGLP----SFRLEHLTKANGIEHSNAHDAMADVYA 189 DL + R Y P+ L S L + + GIE + H AM DV A Sbjct: 96 --DLAFLAR--YQFEPDSFVCTRALSKLVESDESASLASVAERRGIELTGHHRAMNDVEA 151 Query: 190 TIAMAKLVKTRQPRLFDYLFT 210 T+ + + +K L + Sbjct: 152 TVKVFQQMKAEADALGIKYYN 172 >UniRef50_B4SAW0 Exonuclease RNase T and DNA polymerase III n=2 Tax=Chlorobium/Pelodictyon group RepID=B4SAW0_PELPB Length = 190 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 46/200 (23%), Positives = 74/200 (37%), Gaps = 25/200 (12%) Query: 11 FLFHDYETFGT-----HPALD-----RPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 +LF D ET G P D R Q A + D+E N + + KP +P Sbjct: 2 YLFFDTETTGLPRNWRAPVTDVDNWPRLVQLAYLSFDAEGNQLFSGDAI-IKPEGFVIPS 60 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 AV I GI+ Q A +G+ + L + + +N+ FD+++ + R Sbjct: 61 -SAVQIHGISTQRALLEGKPLGQVLQSFYELVADAEVLVA--HNISFDEKIVGSELIRAG 117 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 S + + + C P G WP+ E + G + A Sbjct: 118 MPNSLPSKRKICT---MESTTDFCAIKGPYGNKWPKLS--------ELYFQLFGTVFNEA 166 Query: 181 HDAMADVYATIAMAKLVKTR 200 H+A +D+ AT +K R Sbjct: 167 HNAASDIQATAKCFWELKRR 186 >UniRef50_D2RJV7 DNA polymerase III, epsilon subunit n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RJV7_ACIFE Length = 223 Score = 60.0 bits (144), Expect = 2e-07, Method: Composition-based stats. Identities = 50/218 (22%), Positives = 79/218 (36%), Gaps = 40/218 (18%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTD-----SEFNVIGEPEVFYCKPADDYLPQPG 62 T++ D ET G P D+ + A+ F+ + +P P + P Sbjct: 22 PDTYVVVDLETTGLDPERDQIIEIGALEVTAGKRGRTFSTLLQPRT----PLEGQYVSPF 77 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTV--PKTCILGYNNVRFDDEVTRNIFYRNF 120 +TGIT + A + + F +GYN V FD + F Sbjct: 78 ITRLTGITNEMLAAAPQP-----RQALEAFGKFLGSRVAVGYN-VGFDMGFLQQQFQDQL 131 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Y P A W D+L + + + L W + RL +L +E+ A Sbjct: 132 YRPLANDW------VDVLPMAQTLFPL------WDHH-------RLNNLAAWYHVENKEA 172 Query: 181 HDAMADVYATIAMAKLVKT----RQPRLFDYLFTHRNK 214 H A++DV T + +K + P L D+L R K Sbjct: 173 HRALSDVETTETCFRKLKEDAGRQYPSLEDFLEKVRQK 210 >UniRef50_C8P6J0 Putative uncharacterized protein n=1 Tax=Lactobacillus antri DSM 16041 RepID=C8P6J0_9LACO Length = 224 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 72/199 (36%), Gaps = 30/199 (15%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFY--CKPADDYLPQ 60 + + S F+ D ET G +P + A++ + G FY K Sbjct: 47 HSRSKGSDFVSLDLETSGLNPTTAQIISIGAVK-----RIAGHTTTFYRLVKLQSGKKLA 101 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 +TG+ Q+ +G + F I+GYN + FD+ + R Sbjct: 102 GDIARLTGLNSQQLATEGVAVKEALIDL-QSFAKKLP-IVGYN-LLFDERFLQTAVIR-- 156 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 A Q +N D+L ++ + L + GI++ A Sbjct: 157 ----AGIVQFNNKMVDVLPYVKTVDKFCDN-------------YHLATILTRYGIKNEQA 199 Query: 181 HDAMADVYATIAMA-KLVK 198 H+++AD AT+ + KL+K Sbjct: 200 HNSLADATATMKLVDKLIK 218 >UniRef50_C7H6D8 DNA polymerase III, alpha subunit n=4 Tax=Clostridiales RepID=C7H6D8_9FIRM Length = 244 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 48/218 (22%), Positives = 85/218 (38%), Gaps = 43/218 (19%) Query: 6 KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDS----EFNVIGEPEVFYCKPADDYLPQP 61 + +F D ET G + + AAIR + + +VF P + +PQ Sbjct: 9 TKYKAVVFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQ- 67 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYN---NVRFDDEVTRNIFYR 118 V +TGIT ++ +G EA AAR L + + ++ +N ++ F E+ R Sbjct: 68 KIVELTGITDEQLENEGITEAEAAARFTELISGGRVLLVAHNAQFDLLFTAEMLR----- 122 Query: 119 NFYDPYAWSWQHDNS------RWDLLDVMRACYALR--PEGINWPENDDGLPSFRLEHLT 170 +H N D LD + R P + + + +++LE Sbjct: 123 ----------RHGNGGPEALKAADYLDSLTVYKDRRAYPHKL-----ANAILTYKLEG-- 165 Query: 171 KANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYL 208 + N+H A+ DV A + K + + L +Y+ Sbjct: 166 -----KVQNSHRAIDDVAALFEVCKAMDAERSDLLNYV 198 >UniRef50_A1ZKT0 Exonuclease n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZKT0_9SPHI Length = 245 Score = 59.6 bits (143), Expect = 2e-07, Method: Composition-based stats. Identities = 41/194 (21%), Positives = 67/194 (34%), Gaps = 43/194 (22%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 + +F D ET GT DR Q A I+ ++ + + + P + Sbjct: 4 KKPIVFFDLETTGTDTLNDRIVQIAIIKLAADGTKVEKERLI----NPTIPIPPEVTKVH 59 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRN---FYDPY 124 G++ + K A+ F + GYN++ FD + F R F +P Sbjct: 60 GVSDEMV--KDAPTFHQVAKSLFEFIR-GCDLAGYNHLNFDMPLLIEEFARAGVVFPEP- 115 Query: 125 AWSWQHDNSRWDL--LDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEH---SN 179 D+ +DVM+ Y P ++ H N Sbjct: 116 -----------DVQYIDVMKVYYHFHPRTLS----------------AAYQLYCHKELEN 148 Query: 180 AHDAMADVYATIAM 193 AH+AMAD AT+ + Sbjct: 149 AHNAMADTQATLEI 162 >UniRef50_C2KP37 DNA polymerase III epsilon subunit n=3 Tax=Mobiluncus RepID=C2KP37_9ACTO Length = 258 Score = 59.2 bits (142), Expect = 3e-07, Method: Composition-based stats. Identities = 45/200 (22%), Positives = 73/200 (36%), Gaps = 31/200 (15%) Query: 14 HDYETFGTHPALDRPAQFAAIR----TDSEFNVIGEPEVFYCKPADDYLPQP-GAVLITG 68 D ET G DR A + IR D+ +N + P +P P A + G Sbjct: 37 FDTETTGVWVRRDRIATASLIRRVGGEDTAYNWVINPG----------VPMPVKASEVNG 86 Query: 69 ITPQEARAKGENEAAFAARIHSLF---TVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA 125 +T + GE A A I S ++G+N V FD E+ R + P Sbjct: 87 LTDEYLEKHGEQPAVALAEIASELAAAMSSGVPVVGFN-VAFDFEILEAELAR-YELPTL 144 Query: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA-HDAM 184 + R + P ++ + +L + +A G++ + A H A Sbjct: 145 RARLGG----------RIAPVIDPLVLDRTLDRYRRGKRKLATVCEAYGLDGNRAFHQAD 194 Query: 185 ADVYATIAMAKLVKTRQPRL 204 +DV AT+ + + R L Sbjct: 195 SDVTATLDLLGAMIERYESL 214 >UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TRP3_9BACT Length = 193 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 46/198 (23%), Positives = 72/198 (36%), Gaps = 30/198 (15%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDY-LPQ 60 M+ S F+ D ET G DR + AIR F E E F + +P Sbjct: 1 MDKSLWDSGFVAIDVETTGLSNRWDRIVEIGAIR----FTPGSETESFQTFVSPGRPIPS 56 Query: 61 PGAVLITGITPQEAR-AKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRN 119 AV I GIT + A G +EA+ A P + ++N FD Sbjct: 57 -EAVAIHGITDEMVEGAPGLSEASIALASFLKDEEP----MVFHNPSFD---------LG 102 Query: 120 FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSN 179 F D + + W+++ V C R + G+ + L L + G+ Sbjct: 103 FLDANMRAIK---GSWNVMPVFDTCGLAR-------KAFPGIKGYSLVALARHFGLSGGG 152 Query: 180 AHDAMADVYATIAMAKLV 197 H A+ D + ++ L+ Sbjct: 153 HHRALEDCRYSASLFNLI 170 >UniRef50_UPI000169825F exonuclease I n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI000169825F Length = 76 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 24/54 (44%), Positives = 36/54 (66%), Gaps = 1/54 (1%) Query: 193 MAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKP-LVHVSGMFGAWRGNTSW 245 +A+L+K RQPRL+ YL +HRNKH+L L+++ P L+HVS M+ G + Sbjct: 12 LARLIKQRQPRLYGYLLSHRNKHQLRDLLNLKATPPILLHVSSMYPVELGCIAP 65 >UniRef50_C7X7A5 Exonuclease n=4 Tax=Bacteroidales RepID=C7X7A5_9PORP Length = 192 Score = 58.8 bits (141), Expect = 4e-07, Method: Composition-based stats. Identities = 45/199 (22%), Positives = 78/199 (39%), Gaps = 24/199 (12%) Query: 11 FLFHDYETFGTHPALDRPAQFAA-IRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 LF D ET G + Q + I D V E F P + A+ I + Sbjct: 3 LLFFDLETTGIKYWRNGVHQISGEIVIDG---VTKESFNFNVCPHPQCEIEEEALRICNV 59 Query: 70 TPQEARAKGENEAAF-------AARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 + ++ +A + + + K ++GYNN FD+ + F +N D Sbjct: 60 SKEQIQAYPPMREVYVKFVNMLSKYVDKFDKKDKFFLVGYNNASFDNHFLKAFFVQNG-D 118 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA-- 180 Y +SW NS D++ V+ + +R + F+ E + +A GI+ +A Sbjct: 119 NYFYSWFWVNS-IDVM-VLSTQHLMR--------KRHEMTDFKQETVARALGIQIDSAKL 168 Query: 181 HDAMADVYATIAMAKLVKT 199 HDA D+ T + + + Sbjct: 169 HDASYDIQLTKKIYNRISS 187 >UniRef50_Q67M39 DNA polymerase III-like protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67M39_SYMTH Length = 390 Score = 58.5 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 39/189 (20%), Positives = 66/189 (34%), Gaps = 25/189 (13%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 + D ET G R Q + I + + D + A+ + + Sbjct: 23 NLVVIDTETTGLEYDQHRIIQIGVVAIKE--QRIVKTWESKLRLIDGEV-SAYAMQVNRL 79 Query: 70 TPQEARAKGENEAAFA-ARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 P + R++ ++ F P +LG +N+ FD + F R+ W Sbjct: 80 DPSDMRSEKYPHPKAVLRKLQEEFLRPG-VLLGAHNLSFDLGFLQAEFARHGLP----QW 134 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 Q + +D M AL P+ S LE L + +E + HDA+AD Sbjct: 135 QGN-----FVDSMALGRALLPDL-----------SASLESLARHFRVELTQHHDALADAV 178 Query: 189 ATIAMAKLV 197 AT + + Sbjct: 179 ATAHVLLHL 187 >UniRef50_A7BXL6 Exodeoxyribonuclease I n=1 Tax=Beggiatoa sp. PS RepID=A7BXL6_9GAMM Length = 178 Score = 58.5 bits (140), Expect = 6e-07, Method: Composition-based stats. Identities = 24/121 (19%), Positives = 46/121 (38%), Gaps = 2/121 (1%) Query: 328 QHCLDNLKILRENPQVREKVVAIFAEAE-PFTPSDNVDAQLY-NGFFSDADRAAMKIVLE 385 +N L+ + ++ K++ E P P +++A LY N F S ++ A + Sbjct: 41 ALVEENKNWLQSHTEIFRKIIQYHQEFRYPKIPDLDIEAALYQNDFLSASELAKCRQFHA 100 Query: 386 TEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAD 445 + + F D + KL RN+P L + + ++ +V Y D Sbjct: 101 ATLPDKIEMVTQFEDIDLRKLASRLLCRNYPDNLPPMLTRDFEDYVWRVNPENEEDAYFD 160 Query: 446 E 446 Sbjct: 161 H 161 >UniRef50_B9XHY8 DNA-directed DNA polymerase n=1 Tax=bacterium Ellin514 RepID=B9XHY8_9BACT Length = 199 Score = 58.1 bits (139), Expect = 7e-07, Method: Composition-based stats. Identities = 46/226 (20%), Positives = 74/226 (32%), Gaps = 35/226 (15%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 ++ D ET G D Q AA+R + V+ + F+ Sbjct: 1 MHQDYVIFDLETTGLSSYQDEIIQIAAVRMSNG--VVCSSDSFFSYVNPGRSISSFITSY 58 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTV--PKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 TGIT Q+ +A + F+ K ++ +N RFD + RN Sbjct: 59 TGITNQD-----VGDAPRVGTVLKDFSRYAGKATLIAHNGHRFDMKFLHAGCSRNALP-- 111 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 + D + + R + P G GL S L L +N HDA Sbjct: 112 ----TRAVNYHDSIYLSRLVWGKCPGG-------HGLDSV-LNRLQISN--HGVRRHDAR 157 Query: 185 ADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLV 230 DV L+ +++ L R + +L L + P + Sbjct: 158 GDVE-------LLAEAVEKMWHLL---RERAELKPLALHQGVLPCL 193 >UniRef50_A8UVH7 Putative uncharacterized protein n=1 Tax=Hydrogenivirga sp. 128-5-R1-1 RepID=A8UVH7_9AQUI Length = 215 Score = 57.7 bits (138), Expect = 8e-07, Method: Composition-based stats. Identities = 48/202 (23%), Positives = 77/202 (38%), Gaps = 34/202 (16%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIR-TDSEFNVIGEPEVFYCKPADDYLPQ 60 + +++TF+ D ET G A+R + FN + E + KP + Sbjct: 31 LKQKVEETTFVVFDTETTGLDLRRAELVSIGALRVVNYSFN-LSESFHRFVKPKELTR-- 87 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFT--VPKTCILGYNNVRFDDEVTRNIFYR 118 +V I GITP E K E+ R+ F V + ++G+N V FD ++ + Sbjct: 88 -VSVEIHGITPHELEKKAESH----DRVLEDFMEYVRGSVLVGFN-VEFDRKIVEKYSLK 141 Query: 119 NFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHS 178 P N R D+ + W + G L+ + + GI Sbjct: 142 VLGLPLL------NYRLDVFRL-------------WKKR--GGREGSLKDIAEELGIPVV 180 Query: 179 NAHDAMADVYAT-IAMAKLVKT 199 AH A+ D Y T + KL+K Sbjct: 181 GAHSALDDAYITALVFLKLLKR 202 >UniRef50_Q9PQB4 DNA polymerase III polC-type n=17 Tax=Ureaplasma RepID=DPO3_UREPA Length = 1442 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 69/205 (33%), Gaps = 27/205 (13%) Query: 4 DGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 63 +T++ D ET G P D +F A+ + IGE F+ KP Sbjct: 402 QNLDNATYVIFDIETTGLFPNFDEIIEFGAVIMQNN-KQIGEKIQFFIKPIQQI--NENV 458 Query: 64 VLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 +T I+ QE +E +I +F ++ +N + FD + +P Sbjct: 459 TNLTNIS-QEMVNNAIDEKTALLKIKEIF--DDHILVAHNGINFDINFINQRLLKWGLEP 515 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDA 183 N D L + RA + + G + E +AH A Sbjct: 516 LK------NPSIDTLMISRAINPFKSHRL-------GAICKKYEV-----DYNDESAHRA 557 Query: 184 MADVYATIAMAKLVKTRQPRLFDYL 208 D I +A + K + LF+ Sbjct: 558 DYDA---IVLADVFKVMKNNLFNDF 579 >UniRef50_Q2Q0H1 Putative DNA polymerase type III, exonuclease domain n=1 Tax=uncultured organism HF70_19B12 RepID=Q2Q0H1_9ZZZZ Length = 270 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 49/188 (26%), Positives = 70/188 (37%), Gaps = 34/188 (18%) Query: 14 HDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL-ITGITPQ 72 D ET G +P DR Q+A I D + V + D + P A + + GI+ + Sbjct: 12 FDTETTGLNPRKDRILQYAFIGRD-----VDGSSVCQVELIDPGIKIPEASMNVHGISNE 66 Query: 73 EARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYR---NFYDPYAWSWQ 129 + +G + I L I+G+N FD F R PYA Sbjct: 67 DVTGRGSFGMH-SNDIAELI--DGAIIVGHNINAFDWRFIEFEFMRVGEAVPSPYAL--- 120 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 D L++ R G+ P G + L HL K GI AH A AD A Sbjct: 121 -----VDTLELAR--------GLRIP----GRHT--LGHLCKRYGIGLDRAHSADADAAA 161 Query: 190 TIAMAKLV 197 T+ + + Sbjct: 162 TLILLWKM 169 >UniRef50_C9ZG17 Putative DNA polymerase III, epsilon chain (EC 2.7.7.7) n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZG17_STRSW Length = 613 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 38/181 (20%), Positives = 58/181 (32%), Gaps = 28/181 (15%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEA 74 D ET G P DR + + D++ N GE D P P V + G+T Sbjct: 23 DVETSGLRPGRDRVLSLSILTLDAQGNQTGEFSTL---LNPDCDPGP--VHVHGLTADRL 77 Query: 75 RAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSR 134 G A + + +N +FD + + F + SW + R Sbjct: 78 A--GAPAFEEIAPQVGALLSSRVLVA--HNAQFDYDFLAHEFAQ------VRSWAPVSRR 127 Query: 135 WDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMA 194 L + R P+ +L L G+ AHDA DV + Sbjct: 128 LCTLALNRLVGPATPD-------------LKLGTLAAHYGVRQEKAHDAQDDVRVLSGIL 174 Query: 195 K 195 + Sbjct: 175 R 175 >UniRef50_D1R5I0 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5I0_9CHLA Length = 231 Score = 57.3 bits (137), Expect = 1e-06, Method: Composition-based stats. Identities = 40/178 (22%), Positives = 57/178 (32%), Gaps = 32/178 (17%) Query: 12 LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITP 71 L++D ET G D + A + +G F P A I IT Sbjct: 4 LYYDTETTGIKADRDYVIELAVY------DPVGNR-TFERLINPGVPIPPEATAIHHITD 56 Query: 72 QEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRN--FYDPYAWSWQ 129 + F ++ +NN +FD RN F R+ P Sbjct: 57 EMVA--NAPSFGEIIEEFKEFCSGDVVLIAHNNDQFDIHFLRNEFKRSNQELPP------ 108 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 W LD ++ R + LP L+ L GI +NAH A+ DV Sbjct: 109 -----WKFLDTLKWARRYRND----------LPRHTLQFLRGIYGIAENNAHRALDDV 151 >UniRef50_B0B7H7 DNA polymerase III, epsilon chain n=13 Tax=Chlamydiaceae RepID=B0B7H7_CHLT2 Length = 232 Score = 56.9 bits (136), Expect = 1e-06, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 67/187 (35%), Gaps = 40/187 (21%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIR--TDSEFNVIGEPEVFYCKPADDYLPQP-GAVL 65 +F+D ET GT DR + AA T F + PE +P P A Sbjct: 2 PALIFYDTETTGTQIDKDRIVELAAYNGTTSESFQTLVNPE----------IPIPAEATK 51 Query: 66 ITGITPQE-ARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 I GIT E A A EA + I F ++ +NN FD + Sbjct: 52 IHGITTAEVADAPRFPEA-YQKFI--EFCGTDNILVAHNNNAFDYPLL------------ 96 Query: 125 AWSWQHDNSRWDL-LDVMRACYALRPEGINWPEN-DDGLPSFRLEHLTKANGIEHSNAHD 182 + R L +R + + W + LP L++L + G E + AH Sbjct: 97 ----VRECRRHGLSEPQLRTI-----DSLKWAKKYRTDLPQHSLQYLRQVYGFEENQAHR 147 Query: 183 AMADVYA 189 A+ DV Sbjct: 148 ALDDVIT 154 >UniRef50_C1FD33 Exonuclease and DNA helicase n=3 Tax=cellular organisms RepID=C1FD33_9CHLO Length = 1473 Score = 56.9 bits (136), Expect = 2e-06, Method: Composition-based stats. Identities = 39/202 (19%), Positives = 66/202 (32%), Gaps = 28/202 (13%) Query: 6 KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 + + D ET G + +R + AA+ + +P P +P P V Sbjct: 290 SEVPCVVVFDLETTGLNKDRNRIIEIAAVNVS---DPTHQPMSTLVNPGRFAVPPP-VVA 345 Query: 66 ITGITPQEARAKGENEAAFAARIHSLF-----TVPKTCIL---GYNNVRFDDEVTRNIFY 117 +TGIT A AA + + + +N +FD + Y Sbjct: 346 LTGITNAMVSAPAVPSFQRAAELFQEYIDEARRRCGGASVLLAAHNARQFDAGFLQAE-Y 404 Query: 118 RNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGI-- 175 R W+ D L + R A + S++LE L G+ Sbjct: 405 RRLGRELPEDWRF----VDTLPLARKTLA---------KEAVPGGSYKLESLAAHFGVDT 451 Query: 176 EHSNAHDAMADVYATIAMAKLV 197 ++AH A AD + + + Sbjct: 452 AGASAHRAEADARMLGDVLQRL 473 >UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamydiales RepID=Q252U5_CHLFF Length = 249 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 45/221 (20%), Positives = 75/221 (33%), Gaps = 27/221 (12%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 + + F+ D E G DR +FAA R + NVI E D + + I Sbjct: 5 KDTIFVCLDCEMTGLDVKKDRIIEFAAKRFTFD-NVIDSMETL---INPDRVISAESQRI 60 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 I+ + + F F I+G+ +V FD +V Sbjct: 61 HRISDAMLKDQPRISEVFPKI--QAFLKEGDYIVGH-SVGFDLQVLTQEA--------ER 109 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 + S++ ++D +R + P+ LE L + + H AM D Sbjct: 110 IGETFLSKYCIIDTLRLA-----------KEYGDSPNNSLEALAVHFNVPYDGNHRAMKD 158 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMK 227 V I + K R R + L +K M + + + K Sbjct: 159 VEININIFKHFCKRF-RTIEQLKQVLSKPIKMKYMPLGKHK 198 >UniRef50_B8FZZ1 DnaQ family exonuclease/DinG family helicase n=2 Tax=Desulfitobacterium hafniense RepID=B8FZZ1_DESHD Length = 929 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 46/183 (25%), Positives = 72/183 (39%), Gaps = 34/183 (18%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL-ITGITPQE 73 D ET G D +FAA+ + E P P +L +TGI+P+E Sbjct: 10 DIETTGFDIYNDEIIEFAALCIEEG--EEAEAFSVLISPRRQV---PERILRLTGISPEE 64 Query: 74 ARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNS 133 + G +A + +I LF I+G+N V FD + +N+ Sbjct: 65 LKQAGSLQA-YRDKILDLFQ--DAIIVGHN-VEFDLGFLEQAL----------TIHFENT 110 Query: 134 RWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEH-SNAHDAMADVYATIA 192 WD L++ R L P +P ++L LTK+ G+ AH A+ D A Sbjct: 111 LWDTLEIAR---ILYPN----------MPKYKLGDLTKSLGLTPLEKAHRALFDARAAWE 157 Query: 193 MAK 195 + + Sbjct: 158 LLQ 160 >UniRef50_B9CLN3 Putative exonuclease, RNase T and DNA polymerase III n=1 Tax=Atopobium rimae ATCC 49626 RepID=B9CLN3_9ACTN Length = 251 Score = 56.5 bits (135), Expect = 2e-06, Method: Composition-based stats. Identities = 48/179 (26%), Positives = 64/179 (35%), Gaps = 26/179 (14%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEA 74 D ET G P D Q + I D I E C P P A I GITP+ Sbjct: 27 DTETTGLDPRKDEIIQLSMI--DGHGKSI--FESLICPPTRKRWPN--AQEINGITPKMV 80 Query: 75 RAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSR 134 KG+ E A I+GYN + FD + + +F D + Sbjct: 81 --KGKPELEEVADQVQEAINAADLIVGYN-LPFDISMMEAEGF-DFSD---------KEQ 127 Query: 135 WDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAM 193 +DL++ + W D +L K GI+ AHDA D ATI + Sbjct: 128 YDLMEDYAQVFGR------WSSAKDDYLWTKLTTAAKHYGIK-FAAHDAGEDARATIKL 179 >UniRef50_C3RQT5 DNA polymerase III subunit epsilon n=1 Tax=Mollicutes bacterium D7 RepID=C3RQT5_9MOLU Length = 224 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 38/198 (19%), Positives = 68/198 (34%), Gaps = 25/198 (12%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLP---QPGAVLIT 67 ++ D ET G + DR + AI+ V+ C P P +T Sbjct: 41 YVVFDLETTGFNKKEDRIIEIGAIKV-KNGRVVDRFSTL-CAPIKGGKPMYISAKITEVT 98 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYR-NFYDPYAW 126 GI + + E+ K + +N ++FD + R N + Sbjct: 99 GIKNVDLLNQ-IPESEAVKNFMCWLGESK-ISVAHNGLKFDIPFLKEACKRSNVEFKFTH 156 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 +LD M AL N+ +P+ + E L + G+++ AH A+ D Sbjct: 157 ----------ILDTMLLSKALN------YVNNGNIPNNKQETLARYFGVDY-QAHRAVND 199 Query: 187 VYATIAMAKLVKTRQPRL 204 A + + +K + Sbjct: 200 CEALLKIFDKLKNDAKNI 217 >UniRef50_A5IXK4 DNA polymerase III alpha subunit n=1 Tax=Mycoplasma agalactiae PG2 RepID=A5IXK4_MYCAP Length = 1459 Score = 56.1 bits (134), Expect = 3e-06, Method: Composition-based stats. Identities = 26/119 (21%), Positives = 46/119 (38%), Gaps = 6/119 (5%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 + N + +++ D ET G P +F A+ + + +GE F+ KP Sbjct: 415 VPNGNFKDYSYVSFDIETTGLSPKFHEIIEFGAVDINQDL-KVGEVTQFFIKPQAKI--G 471 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRN 119 +TGIT Q ++G + RI+ + +N +FD + F N Sbjct: 472 AFTTELTGITQQMLDSEGLSIKDGLQRIYDCL--DGKVAIAHNA-KFDFNFLKEQFRLN 527 >UniRef50_A5FKC9 DNA polymerase III, alpha subunit n=26 Tax=cellular organisms RepID=A5FKC9_FLAJ1 Length = 1510 Score = 55.8 bits (133), Expect = 3e-06, Method: Composition-based stats. Identities = 47/194 (24%), Positives = 71/194 (36%), Gaps = 30/194 (15%) Query: 11 FLFHDYETFGTHPALDRP----------AQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 +L D ET G D P Q A D + E + + KP +P Sbjct: 2 YLIFDTETTGLPKRWDAPITDSDNWPRCIQIAWQLHDE-MGQLIEHQDYLVKPEGFNIPY 60 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 A I GI+ + A A G A + + + K I+G N + FD + F+R Sbjct: 61 -DAERIHGISTELAEADGITLAEVLEKFNIALSKTK-FIVGQN-LGFDVNIMGAEFHRMG 117 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSN- 179 + S+ + V+ C + + P G F+L LT+ + Sbjct: 118 VE----------SQMASMPVLDTCTEVTASLLQLPGGRGGK--FKLPTLTELHSYLFDQP 165 Query: 180 ---AHDAMADVYAT 190 AH+A ADV AT Sbjct: 166 FAEAHNATADVEAT 179 >UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive type n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSB7_9FIRM Length = 1415 Score = 55.8 bits (133), Expect = 4e-06, Method: Composition-based stats. Identities = 48/232 (20%), Positives = 79/232 (34%), Gaps = 34/232 (14%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIR-TDSEFNVIGEPEVFYCKPADDYLPQP 61 N+ K +T++ D ET G P D+ + A++ D +I E P P Sbjct: 393 NENKSYNTYVVFDIETTGLSPIRDKITEIGAVKIVDG---IITERFSQLINPQMLI---P 446 Query: 62 GAVL-ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 V +T IT + E A + + + ++ +N +FD R +F N Sbjct: 447 EKVQELTRITNALVENEPTIE-EVAPKFYDFI--KDSVLVAHNA-KFDTAFIRRVFKEND 502 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 D N D L RA F L L K G+ A Sbjct: 503 LD-------FINPILDTLSFARAT-------------VKDTKKFNLATLCKKFGVSLVGA 542 Query: 181 HDAMADVYATIAMAKLVKTR--QPRLFDYLFTHRNKHKLMALIDVPQMKPLV 230 H A+ D AT + + + P+ D+ + K ++ I ++ Sbjct: 543 HRAVNDAEATAHLFIKLINKIFDPKHIDFNKLNSLKSQIEPEILFESSLSIL 594 >UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7 Tax=Geobacillus RepID=C5D3B0_GEOSW Length = 921 Score = 55.4 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 47/226 (20%), Positives = 80/226 (35%), Gaps = 34/226 (15%) Query: 11 FLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 F+ D ET G P DR Q + ++ F+ P D P + T I Sbjct: 5 FVIIDLETTGNVPKKGDRIIQL-GMVVIENGKIVDRFSSFF-NPERDIPPFVQQL--TNI 60 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 T Q A + A AA++ + + + +N V FD + + + P++ Sbjct: 61 TEQMV-ADAPSFAEEAAKVADMLQQ--SYFVAHN-VSFDLQFLQEELHMAGLPPFSGPT- 115 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 +D + I +P + S++L L K I+H H A +D Sbjct: 116 --------IDTVELAR------IVFPTAE----SYKLGDLAKQLHIDHDQPHQADSDAEV 157 Query: 190 T----IAMAKLVKTRQPRLFDYLFTHRN--KHKLMALIDVPQMKPL 229 T IA+ ++ +L K L L+D M+ + Sbjct: 158 TAKLFIALLNRLRQLPFITLQHLKRLSPYLKSDLYPLLDNIIMEKM 203 >UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFC6_9FIRM Length = 226 Score = 55.4 bits (132), Expect = 4e-06, Method: Composition-based stats. Identities = 46/246 (18%), Positives = 82/246 (33%), Gaps = 38/246 (15%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 ++ +D ET G D + +A++ ++ E +P A + I+ Sbjct: 17 YVLYDLETTGISSLYDEVIEISAVKV-RNGKIVDEFSELVNPGRP--IPYA-ASSVNNIS 72 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCIL-GYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 + N +F + +L G+N FD + YR+ + Y Sbjct: 73 DKMVE----NARSFEKVLPEFLAFAGDDVLAGHNIAGFDMKFL----YRD-CEKYFGQTL 123 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 N D L + + C+ PE W +L L + GI AH A+AD Sbjct: 124 T-NDYIDTLAIAKLCF---PE---WKHR-------KLSDLAEHYGISTKGAHRALADCRM 169 Query: 190 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPL 249 + +L+ K + + L +G FG + G T + P Sbjct: 170 NQQVFELMAKESG-------GTSAKQTEEKICPRCGL-ALKKRNGRFGGFWGCTGF--PD 219 Query: 250 AWHPEN 255 + +N Sbjct: 220 CRYTKN 225 >UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncultured Thermotogales bacterium RepID=Q1EM31_9BACT Length = 1428 Score = 55.4 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 42/218 (19%), Positives = 74/218 (33%), Gaps = 41/218 (18%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 FL D ET G +P D + AI+ + + + + KP + +TGIT Sbjct: 418 FLVFDLETTGLNPKEDEIIEIGAIK--MKGSEVLGTYSTFVKPEKEL--SAMITSLTGIT 473 Query: 71 PQEARAKGENEAAFAARIHSLFTV-PKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 +EA + FT + CIL +N FD RN ++F W+ Sbjct: 474 EDML-----SEARPIKEVLPEFTKFTEGCILVAHNASFDYGFVRNSVKKHF----GGDWE 524 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 + + A R S+ L+++ K + H + H A D Sbjct: 525 MPC----IDTLALAKSLFR------------SKSYSLDNVVKRLKLGHFDHHRAFEDAKV 568 Query: 190 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMK 227 T + K K + + ++ +++ Sbjct: 569 TAEVLKK-----------FVQLAKKRGVQNVNELEKLR 595 >UniRef50_B5ZV55 DNA polymerase III, epsilon subunit n=23 Tax=Alphaproteobacteria RepID=B5ZV55_RHILW Length = 245 Score = 55.4 bits (132), Expect = 5e-06, Method: Composition-based stats. Identities = 40/184 (21%), Positives = 58/184 (31%), Gaps = 27/184 (14%) Query: 12 LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITP 71 + D ET G DR + I + F G Y P D + P A+ + GIT Sbjct: 4 IIFDTETTGLDNRADRIIEIGGIELFNHF-PTGNVIHIYINPGDQKV-HPDALAVHGITD 61 Query: 72 QEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHD 131 + + K + A A I + F K +N FD R P Sbjct: 62 EFLKDK-KPFAEVAEEILTFFGDAKWIA---HNATFDMGFINAELARIGLPPILPE---- 113 Query: 132 NSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGI--EHSNAHDAMADVYA 189 D L + R + + P L+ L + GI H H A+ D Sbjct: 114 -RVLDTLSMARRKHPMGPN--------------SLDALCRRYGIDNSHRTKHGALLDSEL 158 Query: 190 TIAM 193 + Sbjct: 159 LAEV 162 >UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C0WTL9_LACBU Length = 945 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 47/202 (23%), Positives = 78/202 (38%), Gaps = 30/202 (14%) Query: 5 GKQQSTFLFHDYETFGTHPALD-RPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 63 ++T+ D ET GT ++D R QF+ T I E V P + P Sbjct: 1 MNSKTTYAVVDIETTGTDMSVDNRIIQFSC--TLVAHGKIVETYVSDINPQREV---PER 55 Query: 64 VL-ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 ++ +TGITP+ K +++++ L + T + +N V FD F R Y Sbjct: 56 IIQLTGITPERL-KKAPTFDQVSSKLYKLLS--GTVFVAHN-VNFDFPFLNGEFQRVGYP 111 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHD 182 +D + L P L S+RL+ L+ I H++ H Sbjct: 112 ELDIE---------AIDTVTLSQILLPT----------LSSYRLQDLSTYFNIIHNHPHT 152 Query: 183 AMADVYATIAMAKLVKTRQPRL 204 A +D AT + ++ + L Sbjct: 153 ADSDALATAKLLLILLRQVKML 174 >UniRef50_UPI00017434A8 hypothetical protein cdivTM_22527 n=1 Tax=candidate division TM7 single-cell isolate TM7a RepID=UPI00017434A8 Length = 50 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 22/49 (44%), Positives = 30/49 (61%), Gaps = 2/49 (4%) Query: 168 HLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFT--HRNK 214 + K N +EH+ AHDA++DV A IA+ KL+ RLF+YL R K Sbjct: 1 RIIKINNLEHTKAHDALSDVEALIAVTKLIAKTNNRLFNYLLKCAIRKK 49 >UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B5W2_RUMGN Length = 219 Score = 55.0 bits (131), Expect = 6e-06, Method: Composition-based stats. Identities = 41/236 (17%), Positives = 77/236 (32%), Gaps = 43/236 (18%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 + D ET G +D + +A++ ++ + P +P A + G Sbjct: 13 PDYTVFDLETTGISANMDDIIEISAVKVKGG--IVQDTFSTLVNPGRH-IPA-QATKVNG 68 Query: 69 ITPQEARAKGENEAAFAARIHSLFTV--PKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 IT Q +EA + F + ++G+N FD + YR + + Sbjct: 69 ITDQM-----VSEAPLIREAMTEFLRFVGEDILVGHNIQSFDMKFI----YREVEELFQE 119 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 + + D +D + PE L RL L + GI AH A+ D Sbjct: 120 TVSN-----DFIDTLYMARKCLPE----------LKHHRLTDLAEHFGISSKGAHRALND 164 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGN 242 + F+ + + K + ++ +G +G + G Sbjct: 165 CVM-----------NQKCFEEMAKLQKKSVVFVCPKCGGE--MIRRNGRYGEFWGC 207 >UniRef50_C8SCL6 DNA polymerase III, epsilon subunit n=1 Tax=Ferroglobus placidus DSM 10642 RepID=C8SCL6_FERPL Length = 200 Score = 55.0 bits (131), Expect = 7e-06, Method: Composition-based stats. Identities = 42/216 (19%), Positives = 73/216 (33%), Gaps = 31/216 (14%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYC-KPADDYLPQPGAVL 65 ++ F D ET G + D A I D ++ + KP + +V Sbjct: 2 REEKFAVVDVETTGLNVKKDEIISIAIIPMDG-LKILFSEAYYRILKPRRFKI---DSVK 57 Query: 66 ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA 125 GITP+ + I + I+GY ++ D E + F Sbjct: 58 YHGITPRMVE-EAPTFCEVKEEILEKLN--ERIIVGY-SINLDIEFLKKSF-------KE 106 Query: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMA 185 + D+ DV E + D + LE L K G++ + H A++ Sbjct: 107 CEVVFECKYVDIADV---------EKLVGRLFGDYMKDVTLEDLAKKYGVDVAYRHSALS 157 Query: 186 DVYAT-----IAMAKLVKTRQPRLFDYLFTHRNKHK 216 D Y T + + +L+K + F+ + K Sbjct: 158 DAYITAQIFQMQLLRLLKYGLRK-FEDVLRAIKKED 192 >UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidobacterium angulatum DSM 20098 RepID=C4FGI7_9BIFI Length = 186 Score = 54.6 bits (130), Expect = 8e-06, Method: Composition-based stats. Identities = 43/189 (22%), Positives = 69/189 (36%), Gaps = 28/189 (14%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL-ITGI 69 ++ D ET G PA DR + A+R + G Y K + P G + +TGI Sbjct: 19 YVVVDLETTGISPARDRIIEIGAVRVEH-----GTVTAEYSKLVNPGRPVGGFITGLTGI 73 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 + + EA + L P I+ +N FD + R P++ Sbjct: 74 SDEMVGNASPIEAVLPDFLAHL--RPSDTIVAHNA-NFDINFLYDNCMRTLGKPFS---- 126 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 +D +D +R AL P+ RL L + GI H ++D Sbjct: 127 -----YDFIDTLRLSRALFPQE----------RQHRLVDLIQRFGIADEEEHRGLSDALQ 171 Query: 190 TIAMAKLVK 198 T+ + +K Sbjct: 172 TVECYERMK 180 >UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hydrogenothermaceae RepID=C1DWW1_SULAA Length = 205 Score = 54.6 bits (130), Expect = 9e-06, Method: Composition-based stats. Identities = 54/239 (22%), Positives = 92/239 (38%), Gaps = 42/239 (17%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 M N ++++FL D ET G +P + AA+R + ++ + KP+ ++P Sbjct: 1 MYNLTIEEASFLIVDLETTGLNPVNSEIIEIAALRVEGG--IVVDKFHTLVKPSIGFIPT 58 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFY--- 117 L TGIT K E F + F+ + I+ +N +FD ++ Y Sbjct: 59 YITKL-TGITNALVVDKPTIEEVFPQFLK--FSE-NSIIVAHNA-QFDMSFLNSVSYQIT 113 Query: 118 -RNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE 176 R+ +P + L P+ LPS L +L I Sbjct: 114 GRSIQNPVLCTQ-------------NLAKRLFPD----------LPSKSLVNLAYHFNIP 150 Query: 177 HSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGM 235 ++ H A+ D T + K ++ DYL+ N +K+M L+ + K L S Sbjct: 151 YNKKHRALEDALVTYELFK-------KIIDYLYMF-NINKVMDLVRLSNGKDLNQTSKR 201 >UniRef50_D0LN23 Exonuclease RNase T and DNA polymerase III n=7 Tax=Haliangium ochraceum DSM 14365 RepID=D0LN23_HALO1 Length = 180 Score = 54.2 bits (129), Expect = 9e-06, Method: Composition-based stats. Identities = 40/188 (21%), Positives = 64/188 (34%), Gaps = 21/188 (11%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 +F D ET G P + AAIR + V +P P A+ + G Sbjct: 4 LVFIDCETTGLDPERHEILEIAAIRVHPQTLDEERELVLRVRPERLEDADPEALEVNGYR 63 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 + A A + A + + + G+N V FD +W Sbjct: 64 -RRAWADAVSLGDAMAELAPMLE--GAVLAGHN-VAFDRRFL------------EAAWDC 107 Query: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLP-SFRLEHLTKANGIEHSNAHDAMADVYA 189 R + LD +AL + +P G S L + G+ H A DV A Sbjct: 108 VGHRPENLD----HHALDTAALAFPLLMAGEIDSLSLTPVCAHLGVLRGEEHWAFDDVRA 163 Query: 190 TIAMAKLV 197 ++ +A+ + Sbjct: 164 SLGVAQRL 171 >UniRef50_P96171 DNA for Na+/glucose symporter, n=1 Tax=Vibrio parahaemolyticus RepID=P96171_VIBPA Length = 234 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 73/195 (37%), Gaps = 27/195 (13%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 ++D ++ T + D+ET G +P +DR + + + + A D Sbjct: 40 LSDARELDTLVL-DFETTGFNPEVDRVISIGWVEIRNSNIRLNSARHVFINHAIDIC--H 96 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNV---RFDDEVTRNIFYR 118 +V + I P+ G +E A ++ + ++ + + RF ++ + Y+ Sbjct: 97 ESVKVHHIRPETLHVSGISEQAAFTQLLDVIA--GKILVAHGCIMEQRFLEQYIKMK-YQ 153 Query: 119 NFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHS 178 N P W D L + + LRP +W RL + K + Sbjct: 154 NLKLPLIW--------LDTLKIEQYRTQLRPTRSDW----------RLSSIRKELNLPTY 195 Query: 179 NAHDAMADVYATIAM 193 AH+A+ D AT + Sbjct: 196 QAHNALNDAIATAEL 210 >UniRef50_C9PT90 Putative uncharacterized protein n=1 Tax=Prevotella sp. oral taxon 472 str. F0295 RepID=C9PT90_9BACT Length = 900 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 75/205 (36%), Gaps = 19/205 (9%) Query: 14 HDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQE 73 D ET G + D Q AA++ + V G + K P P A+L P Sbjct: 520 FDTETTGLNVFEDDIVQIAAVKMRASCVVEGSAFNVFIKTER---PIP-AMLGDIPNPIV 575 Query: 74 ARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNS 133 A + A + +L +N FD + R R Y P + Sbjct: 576 AELQRNTCLPAAQALQDFMQYVGDSVLLAHNADFDYNILRFNLQR--YCPSIDLHATHPT 633 Query: 134 RWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAM 193 +D L ++R L+P GL ++L+ L + +E +N+H A DV AT+++ Sbjct: 634 YFDSLKIIRL---LQP----------GLKQYKLKALLEVLHLEGTNSHLADEDVQATVSL 680 Query: 194 AKLVKTRQPRLFDYLFTHRNKHKLM 218 + + + + ++ Sbjct: 681 VGYCRQKAAEMIPAQQQFLARQRVQ 705 >UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BAS5_PARDP Length = 659 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 48/228 (21%), Positives = 75/228 (32%), Gaps = 42/228 (18%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIR------TDSEFNVIGEPEVFYCKPADDYLPQPGA 63 T + D ET G P DR Q A +R T F+ + +P +P P + Sbjct: 452 TCVVFDTETTGLDPVADRIVQIAGLRIARGRLTGERFDTLVDPG----RPIP-----PAS 502 Query: 64 VLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 + GIT +A G + A F T ++ +N FD R P Sbjct: 503 TAVHGIT--DAMVAGAPDMTAALTAFHHFAE-DTVLVAHNA-PFDMGFLRRAV------P 552 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEH--SNAH 181 DN D + + + W ++ L+ LT+ GI H Sbjct: 553 -ETGAHFDNQVLDTVLL---------SAMLWGQSA----PHSLDALTERLGIVIPPEARH 598 Query: 182 DAMADVYATIA-MAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKP 228 AM D AT +L+ + + D + + + KP Sbjct: 599 TAMGDARATAEAYLRLIAALEAKGLDRFEDVLAEARRHRRLVDDANKP 646 >UniRef50_A5UUT9 DNA polymerase III, epsilon subunit n=4 Tax=Chloroflexaceae RepID=A5UUT9_ROSS1 Length = 233 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 17/191 (8%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEA 74 D ET G +P D + D + + +P DD P A+ + G+ PQ+ Sbjct: 42 DVETTGLNPRRDALLAIGLVDIDDGRIRMDQRWYTLVRPPDDAPVNPEAIRVHGLLPQDV 101 Query: 75 RAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSR 134 + L + ++ F + R Y+ DP R Sbjct: 102 EQAPPPGDVLPVLLRRLTGRVLVVHVADIDIGFLRQALRR-LYQ--VDP----------R 148 Query: 135 WDLLDVMRACYAL-RPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAM 193 +D R + R + + + D P+ +L L ++ G+ H+A+ D T + Sbjct: 149 GPAIDTARLAWHFQRNQRLI--DGADQEPALQLRALAESAGLPVYAEHNALNDALTTAQV 206 Query: 194 -AKLVKTRQPR 203 + QP Sbjct: 207 FLAQINAMQPN 217 >UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWI2_ALIAD Length = 1440 Score = 53.5 bits (127), Expect = 2e-05, Method: Composition-based stats. Identities = 42/231 (18%), Positives = 83/231 (35%), Gaps = 40/231 (17%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKP-ADDYLPQPGAVLI 66 ++ ++ D ET G + D + AA++ + G+ Y + P V + Sbjct: 424 ETEYVVFDTETTGLNAREDTLIEIAAVKVKA-----GQIVDTYATLIDPERSLDPKIVEL 478 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 TGIT + G+ + A F + +N FD R DP+ Sbjct: 479 TGITNEMVA--GQPKLREALDGFRQFARGAVLVA--HNAEFDVGFLNQCAERLGLDPWEQ 534 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 ++D + L P G +++L+ LT+ ++ N H A+AD Sbjct: 535 P---------VIDTLALARVLYP----------GEKNYKLKTLTQKFSVDLVNHHRALAD 575 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFG 237 AT ++F ++ + L+D+ ++ + +S + Sbjct: 576 SEAT-----------AKVFVHMLKDAKARGIHNLLDMNHLRGQIDISRVRP 615 >UniRef50_C7TCP7 DNA helicase n=8 Tax=Lactobacillus RepID=C7TCP7_LACRG Length = 933 Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 48/198 (24%), Positives = 66/198 (33%), Gaps = 30/198 (15%) Query: 5 GKQQSTFLFHDYETFGTH-PALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 63 +TF D ET GT DR QF I + P P Sbjct: 1 MNADTTFAVVDLETTGTSVKDGDRMIQFGCALVRHG--KIIQTISQMINPDRSV---PQT 55 Query: 64 VL-ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 + +TGI+P+ A + A +H + T T + +N V FD F R Sbjct: 56 IQRLTGISPERLVAAPYFD-EVAPALHQVLTK--TVFVAHN-VNFDYPFLNAEFERIGLP 111 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHD 182 +D + L PE SFRL LT I+H N H Sbjct: 112 KLQLE---------AIDTVELAQVLLPEI----------SSFRLSDLTTHFAIQHDNPHQ 152 Query: 183 AMADVYATIAMAKLVKTR 200 A +D +T + +K R Sbjct: 153 ADSDATSTAKLLLQLKAR 170 >UniRef50_Q0JYK3 Putative exonuclease n=1 Tax=Ralstonia eutropha H16 RepID=Q0JYK3_RALEH Length = 220 Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 37/182 (20%), Positives = 61/182 (33%), Gaps = 28/182 (15%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL-I 66 F+ D ET G + AIR + N +V KP+ P + + Sbjct: 49 PERFVVFDIETTGLDSERHEILEIGAIRVNRNSNNHDTFQVL-VKPSRKV---PKKITEL 104 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 TGITP+ A+G + + ++ +N FD Sbjct: 105 TGITPEMIEAEGVSLESAVQDFAKF--AGNLRLVSFNA-EFDMAFI-------------- 147 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 S S + + AL+ WP+ S+RL + K ++ S+ H A+ D Sbjct: 148 SKAAGKSSITFANPVSC--ALKMSRRAWPD----RKSYRLAEIAKDGNLDTSDMHRALGD 201 Query: 187 VY 188 Sbjct: 202 CQ 203 >UniRef50_A8EU91 DNA polymerase III, epsilon subunit n=5 Tax=Epsilonproteobacteria RepID=A8EU91_ARCB4 Length = 247 Score = 53.1 bits (126), Expect = 2e-05, Method: Composition-based stats. Identities = 58/273 (21%), Positives = 101/273 (36%), Gaps = 44/273 (16%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 ++ D ET G DR QF A+ D++ + + P L A+ + IT Sbjct: 4 YVLFDTETTGAA-QEDRVIQFGAMIVDNK-GKVEAFDELCSAPIPIKL---EAMEVHNIT 58 Query: 71 PQEA-RAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 P E F R+ + ++ +N + FD ++ + + N Y Sbjct: 59 PDLLENKPKAVETNFYKRL-EELNSDENYLIAHN-INFDLDMIKKEGFENSYK------- 109 Query: 130 HDNSRWDLLDVMRACYALRPEG----INWPENDDGLPSFRLEHLTKANGIEHSNAHDAMA 185 L+D +R L + + + L F E+ GI AHDA+ Sbjct: 110 -------LIDTLRCAKHLFSDLPYHRLQYLRYALDLYKFE-ENEASKYGIT-IKAHDAIG 160 Query: 186 DVYAT-IAMAKLV---KTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG 241 DV + ++KLV + P L + + L+++ P+ + FG ++G Sbjct: 161 DVLVMKLFLSKLVGKCREVYPSL----------NPMEKLVELT-TTPVFINTFKFGKYKG 209 Query: 242 -NTSWVAPLAWHPENRNAVIMVDLAGDISPLLE 273 N VA + + N M DL D+ L+ Sbjct: 210 QNIEEVAKIDANYLNWMRTSMNDLDEDMKFTLD 242 >UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (DnaQ-like) (DinG-like helicase) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VES4_9BACT Length = 960 Score = 53.1 bits (126), Expect = 3e-05, Method: Composition-based stats. Identities = 45/211 (21%), Positives = 71/211 (33%), Gaps = 37/211 (17%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPA---DDYLPQPGA 63 +Q F+ D ET G + D Q A +R + V KP ++ Sbjct: 20 EQLEFVAIDIETTGLNSEWDEIIQIAGMRFKG--EEVVNQFVSLVKPKGKVPKFIEH--- 74 Query: 64 VLITGITPQEARAKGENEAAFAARIHSLFT--VPKTCILGYNNVRFDDEVTRNIFYRNFY 121 +T I+PQE + A + F + + ++G+N + FD N Sbjct: 75 --LTHISPQELKT-----APPIKEVLKDFCNFIGDSILVGHN-IGFDFNFLNQFIVDNGG 126 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 P + N WD ++ R + +L L GIE NAH Sbjct: 127 FPIS------NMHWDTAEIGRIYLPFTTD-------------HKLSTLVSFFGIELMNAH 167 Query: 182 DAMADVYATIAMAKLVKTRQPRLFDYLFTHR 212 A AD AT + + + Y+ R Sbjct: 168 QADADALATGKLFNALTNYILNHYGYMLNAR 198 >UniRef50_B3T077 Putative exonuclease n=1 Tax=uncultured marine microorganism HF4000_001N02 RepID=B3T077_9ZZZZ Length = 299 Score = 52.7 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 46/193 (23%), Positives = 64/193 (33%), Gaps = 28/193 (14%) Query: 14 HDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQE 73 D ET G DR Q+A I +D + + I P +P A I GI+ ++ Sbjct: 42 FDLETTGLDARKDRIVQYALIGSDVDGSHIN--LASLVDPRRG-IPTA-ASRIHGISEED 97 Query: 74 ARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYR-NFYDPYAWSWQHDN 132 R G E A I L I+G+N FD R P + Sbjct: 98 VRGVGSFETHVGA-ISELIE--DAVIVGHNISNFDWRFLELECMRAGVETPIPRA----- 149 Query: 133 SRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIA 192 ++D LR P G + L L I AH A AD A++ Sbjct: 150 ----IVDTYSLARKLR-----IP----GRRT--LGVLCARYDISIGRAHSADADAGASLL 194 Query: 193 MAKLVKTRQPRLF 205 + + P F Sbjct: 195 LLWSMMHSHPAEF 207 >UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C2ES78_9LACO Length = 960 Score = 52.7 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 44/220 (20%), Positives = 69/220 (31%), Gaps = 36/220 (16%) Query: 15 DYETFGTHPAL-DRPAQFAAIRTDSE--FNVIGEPEVFYCKPADDYLPQPGAVLITGITP 71 D ET GT DR Q + N +TGI Sbjct: 29 DLETTGTSVNHGDRIIQVGCVLVQDGEIINHFETKINPRVAVPRHI------TQLTGIKN 82 Query: 72 QEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHD 131 + R E A ++SL + T + +N V FD R Y + Sbjct: 83 NDVRNAPLFE-DIAGTLYSLLS--GTIFVAHN-VNFDFPFLNAELERAGYPSLSIK---- 134 Query: 132 NSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATI 191 +D + L P S+RL LT + IEH + H A++D AT Sbjct: 135 -----AIDTVTLSQILMPTV----------KSYRLRDLTSSLSIEHDHPHSAVSDAEATA 179 Query: 192 AMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVH 231 + + + L + + +++PQ +V Sbjct: 180 HLLVDLMKQLRELPTLTL----EKLVELKLNLPQQTTMVL 215 >UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36AB7 Length = 264 Score = 52.7 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 41/195 (21%), Positives = 61/195 (31%), Gaps = 50/195 (25%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP-GA 63 K ++ D ET G D + +A++ + E + + + P P GA Sbjct: 52 SKYVDNYVVFDLETTGISAVKDDIIEISALKVKN-----HEQVETFSRLVNPRRPIPAGA 106 Query: 64 VLITGITPQEARAKGENEA---AFAARIHSLFTVPKTCILGYNNVRFD--------DEVT 112 + GIT + +++ E F I ++G+N FD DEV Sbjct: 107 TKVNGITDEMVQSEPGLEFILPEFLDFI------DGEILIGHNIQSFDLLFLNRAADEVC 160 Query: 113 RNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKA 172 R D +D + AL P GL RL L Sbjct: 161 RKAVLN-----------------DFIDTLFMARALLP----------GLSRHRLTDLADY 193 Query: 173 NGIEHSNAHDAMADV 187 I AH A D Sbjct: 194 FKISSEGAHRAFNDC 208 >UniRef50_C5F3P4 DNA polymerase III n=1 Tax=Lactobacillus paracasei subsp. paracasei 8700:2 RepID=C5F3P4_LACPA Length = 309 Score = 52.7 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 70/190 (36%), Gaps = 35/190 (18%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL-ITGITPQE 73 D ET G D Q +A++ + VI + Y KP+ P V+ ITGIT Sbjct: 49 DIETTGLSSVSDDIIQLSALKVKED-KVIDTFDS-YVKPSTSI---PENVVYITGITNST 103 Query: 74 ARAKGENEAAFAARIHSLFT-VPKTCILGYNNVRFDDEV-TRNIFYRNFYDPYAWSWQHD 131 N + + ++G+N +RFD N FY Y Sbjct: 104 VE----NAPEIFEIMPKFVSFTEGMPLVGHNIIRFDIPFIVNNGFY------YEDI---- 149 Query: 132 NSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATI 191 + LD R + + L + +L L + GI ++H+A+ D TI Sbjct: 150 ----EALDTWRLA--------KNKDFPEPLKNLKLPTLKEYFGIS-GSSHNALDDCKTTI 196 Query: 192 AMAKLVKTRQ 201 + + ++ + Sbjct: 197 TVYRHLRDNK 206 >UniRef50_C0DYM7 Putative uncharacterized protein n=1 Tax=Eikenella corrodens ATCC 23834 RepID=C0DYM7_EIKCO Length = 238 Score = 52.7 bits (125), Expect = 3e-05, Method: Composition-based stats. Identities = 31/136 (22%), Positives = 48/136 (35%), Gaps = 17/136 (12%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 M + D E G +P DR + A + TD++ N++ + E + +D+ L Sbjct: 44 MHTPKPNPLNLCWLDMEMTGLNPEHDRIIEAAVVITDADLNILAQSESYAIHQSDELLEG 103 Query: 61 PGAVLI-----TGITPQEARAKGENEAAFAARIHSLFTVP---KTCILGYNNVRFDDEVT 112 A TG+T Q + +EA R+ T L N V D Sbjct: 104 MDAWNTSTHERTGLT-QRVKDSTLSEAEVEQRLLDFIAQWIPQGTSPLCGNTVHQDRRFM 162 Query: 113 -RNI-------FYRNF 120 R + YRN Sbjct: 163 QRYMPKLEAWFHYRNL 178 >UniRef50_Q1J224 Exonuclease domain in DNA-polymerase alpha and epsilon chain, ribonuclease T n=1 Tax=Deinococcus geothermalis DSM 11300 RepID=Q1J224_DEIGD Length = 188 Score = 52.3 bits (124), Expect = 3e-05, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 65/190 (34%), Gaps = 18/190 (9%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 + + +F D ET G PA P + T + + P + + Y + Sbjct: 4 LPHLAALTQPIIFVDTETGGRDPAR-HPLLTVGLVTLTPQGEVTRPLHLRVR-HEHYEVE 61 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 A+ + GI A + A + + +LG +N+ +D F R Sbjct: 62 EEAMAVNGIDLATHHATAQAPEEVAEAVRAYARAVGRVMLGGHNLAYD-----LGFLRWL 116 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 ++ R D + A + L + G P L+ L K G+ + A Sbjct: 117 LPDLKSIFRRG--RVD--TKLTAQFLLHAGILP---RKVGTP---LDQLAKYFGLAY-QA 165 Query: 181 HDAMADVYAT 190 HDA+ D T Sbjct: 166 HDALEDARVT 175 >UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, putative n=11 Tax=Lactobacillales RepID=A5VK04_LACRD Length = 954 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 74/201 (36%), Gaps = 30/201 (14%) Query: 6 KQQSTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 K+ + D ET GT+ DR Q + + +I E P + P ++ Sbjct: 14 KKAPIYSVVDLETTGTNVNHGDRIIQIGCVLV-QDGEIINHFET-KINPREKI---PRSI 68 Query: 65 L-ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 + +TGI ++ R E A I+SL +T + +N V FD R Y Sbjct: 69 VQLTGIEDKDVRKAPLFE-DIAGTIYSLLA--ETTFVAHN-VNFDFPFLNAELERAGYPS 124 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDA 183 + +D + L P SFRL LT + IEH + H A Sbjct: 125 LSIP---------AIDTVTLSQILLPTA----------KSFRLRDLTSSLHIEHDHPHSA 165 Query: 184 MADVYATIAMAKLVKTRQPRL 204 ++D AT + + R L Sbjct: 166 VSDAEATADLLNDLLKRVQEL 186 >UniRef50_C0GGY8 Exonuclease RNase T and DNA polymerase III n=1 Tax=Dethiobacter alkaliphilus AHT 1 RepID=C0GGY8_9FIRM Length = 198 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 47/188 (25%), Positives = 67/188 (35%), Gaps = 38/188 (20%) Query: 13 FHDYETFGTHPALDRPAQFA----AIRTDSEFNVIGEPEVFYCKPADDYLP-QPGAVLIT 67 F D ET G P + + A A R DS I Y + +P PGA + Sbjct: 14 FVDVETTGLSPRKEEIVELAICLFAYRRDSG--EITRIVDRYVGQREPGVPVSPGAARVH 71 Query: 68 GITPQEARAKGENEAAFAARIH-SLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 G+ + R K + A A +H + F V N FD +F Sbjct: 72 GLRMADLRGKQLDTARIEAILHSAEFIVAH-------NASFDRGFVARLF---------- 114 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 +W GI+W G PS L++L +A+ I+ AH A D Sbjct: 115 -PVSGRKQW----------LCSMSGIDW--KGKGFPSRGLQNLLRAHRIDAGRAHRAEDD 161 Query: 187 VYATIAMA 194 V AT+ + Sbjct: 162 VLATLKLL 169 >UniRef50_B3PN84 DNA polymerase III subunit alpha n=2 Tax=Mycoplasma RepID=B3PN84_MYCA5 Length = 1438 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 44/203 (21%), Positives = 71/203 (34%), Gaps = 36/203 (17%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQF-AAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 T++ D ET G P + +F A+I + +I E F+ KP P Sbjct: 401 SSQTYVVFDLETTGLSPRFNEIIEFGASIIENG---IIKESHQFFIKPTKPIPPS--ITE 455 Query: 66 ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA 125 IT IT A G ++ +I+ + +N +FD V + F + D Sbjct: 456 ITKIT-DNTVANGYSQEEGVRKIYDILKNRICVA---HNAKFDINVCKENFLKYGLD--- 508 Query: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANG--IEHSNAHDA 183 NS+ +D + L E S+RLE + K + AH A Sbjct: 509 ------NSKIIGIDSLAIARFLIDEA----------KSYRLEIVAKKFNVYYARNEAHRA 552 Query: 184 MADVYA-----TIAMAKLVKTRQ 201 D + + KL + + Sbjct: 553 DYDANVLANVWILMILKLAREKN 575 >UniRef50_A8L7F0 Exonuclease RNase T and DNA polymerase III n=1 Tax=Frankia sp. EAN1pec RepID=A8L7F0_FRASN Length = 237 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 45/197 (22%), Positives = 66/197 (33%), Gaps = 33/197 (16%) Query: 15 DYETFGTHPALDRPAQFAAIRT--DSEFNVIGEPEVFYCKPADDYLPQPGAVL-ITGITP 71 D+ET GT DR Q A ++ N + C+ D + P A I GIT Sbjct: 12 DFETTGTDVETDRAVQVALLKVGPTGVLNQL-------CQIIDPGVDVPEAAARIHGITT 64 Query: 72 QEARAKGENEAAFAARIHSLFT---VPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 + AR +G + A R+ ++ N+ FD + R Sbjct: 65 ERARREGRDPAEVLGRVGQALEGVWRDGIPVVIMNS-SFDLTLLDRELRR---------- 113 Query: 129 QHDNS--RWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 H S D+L L P I+ + L L + AHDA+AD Sbjct: 114 HHGRSLAEADML-------VLDPMVIDRELDPRRPGKRTLTALATHYRVRQEGAHDALAD 166 Query: 187 VYATIAMAKLVKTRQPR 203 T +A + P Sbjct: 167 CLTTARIAWRLPRMHPD 183 >UniRef50_UPI0001B52926 exonuclease, RNase T and DNA polymerase III n=3 Tax=Fusobacterium RepID=UPI0001B52926 Length = 191 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 54/202 (26%), Positives = 83/202 (41%), Gaps = 37/202 (18%) Query: 12 LFHDYETFGTHPALDRPAQFAA-IRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 +F D ET G +P Q + IR D + E FY KP ++ A+ + G T Sbjct: 5 IFIDTETGGVNPEKSALIQLSGIIRIDKK---DVEKFNFYIKPFENSEVNEKALEVQGRT 61 Query: 71 PQEARAKGENEAAFAARIHSLF------------TVPKTCILGYNNVRFDDEVTRNIFYR 118 E +A+ E ++ F K + GYN VRFD ++ + +F R Sbjct: 62 LDELKAEKYIE---EKEVYKQFINLLDKYIDKYDKTDKFIVAGYN-VRFDVDILKALFQR 117 Query: 119 ---NFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGI 175 NF Y S +LD + + L+ GI P ++ +LE K GI Sbjct: 118 HGNNFLFSYLDSS--------MLDPLYSIRLLQIAGI-LPVLENN----KLETWCKHFGI 164 Query: 176 EHSNAHDAMADVYATIAMAKLV 197 E AHD++ D+ AT + + Sbjct: 165 E-LKAHDSLEDIVATKKLIGKL 185 >UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Thermomicrobia (class) RepID=B9KXM0_THERP Length = 693 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 67/197 (34%), Gaps = 27/197 (13%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 +F+ D ET G PA R + A+R + + V V +T Sbjct: 83 PRSFVALDVETTGLRPARHRIIEIGAVRY-EDGCCVERFSVL---VNPHRRLPVYIVRLT 138 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 GI ++ A +F T ++GYN V FD + R P Sbjct: 139 GIRDEDLLT--APSFVDVAAAFRVFLGEST-VIGYN-VGFDLDFLNAELRRIGQGPLP-- 192 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 N D+L + RA +G + L+ + ++ G+ H A+ D Sbjct: 193 ----NPALDVLPLARAL-----------LTANGR--YDLDAICRSIGLARGTRHRALPDA 235 Query: 188 YATIAMAKLVKTRQPRL 204 AT + + R ++ Sbjct: 236 EATAVLYLHLVERAEQV 252 >UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia RepID=C6LDW1_9FIRM Length = 1010 Score = 52.3 bits (124), Expect = 4e-05, Method: Composition-based stats. Identities = 42/198 (21%), Positives = 64/198 (32%), Gaps = 28/198 (14%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 K + ++ D ET G D + +A++ V GE P A Sbjct: 19 NKYVADYVVFDLETTGISSKYDEVIEISAVKV-EAGQVTGEFSTL---VNPGRKIPPAAS 74 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKT-CILGYNNVRFDDEVTRNIFYRNFYDP 123 + GIT + F+ + F ++G+N FD + YR+ Sbjct: 75 RVNGITDKMVAGALP----FSEVLGDFFAFAGDFVLVGHNINSFDMKFL----YRDAKK- 125 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDA 183 Y DN D L + RA PE L RL L + GI AH A Sbjct: 126 YFRK-VPDNDYVDTLLLARAA---LPE----------LSHHRLVDLAEHYGISAKGAHRA 171 Query: 184 MADVYATIAMAKLVKTRQ 201 + D + + + Sbjct: 172 LNDCHMNQKVYGKLAEEA 189 >UniRef50_P47277 DNA polymerase III polC-type n=2 Tax=Mycoplasma RepID=DPO3_MYCGE Length = 1451 Score = 51.9 bits (123), Expect = 5e-05, Method: Composition-based stats. Identities = 47/266 (17%), Positives = 83/266 (31%), Gaps = 31/266 (11%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYC-KPADDYLPQPGAVL 65 +TF+ D ET G H D +F+A + + + + KP + Sbjct: 412 SDATFVIFDIETTGLHGRYDDVIEFSARKIKNNSEIDHQQFFLKIDKPIPKTI-----TE 466 Query: 66 ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA 125 IT IT + G ++ +I + ++ +N + FD + F + P Sbjct: 467 ITKITDEMLEG-GIDQQQGLEKIRNYL--DDCVMVAHNGINFDLPFLQTQFEKYNIKPLT 523 Query: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMA 185 L+D + +AL P + + +LE + H A Sbjct: 524 NP---------LIDTLCLSWALNP-LFSSHTLSNICSKLKLE-------FDDERLHRAEY 566 Query: 186 DVYATIAMAKLVKTRQPRLFDYLF-----THRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 D A + K + + K ++ + V +V+V G Sbjct: 567 DTEALKKVFFYFKKQLKEMGINTLTEIDQNLNKKCQIDLMKRVFTNTAIVYVKNQRGFQN 626 Query: 241 GNTSWVAPLAWHPENRNAVIMVDLAG 266 L H NR V+ LA Sbjct: 627 LYEMLSIALTDHNANRPLVLASSLAK 652 >UniRef50_Q83YZ1 DNA polymerase III alpha subunit n=1 Tax=Peanut witches'-broom phytoplasma RepID=Q83YZ1_PEWBP Length = 1492 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 42/244 (17%), Positives = 85/244 (34%), Gaps = 34/244 (13%) Query: 4 DGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 63 G + ++ D ET G DR AA++ + I E P D Sbjct: 398 FGLKNHNYVVLDIETTGFSKTRDRIISIAAVKIQNG--KIIEYFDELINPGKDIKISNLI 455 Query: 64 VLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 +T I+ + K + + + + P ++ +N FD E + F Sbjct: 456 QRLTNISDEILLNKPHIKEILSKFLDFIRDCPNCVLVAHNA-SFDIEFLQETF------- 507 Query: 124 YAWSWQHDNSRWDLLDV---MRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 ++ W LL V + + + + + + SF+++ + Sbjct: 508 -----KNIGLYWPLLPVIDTLTLAQKYFNKILKYFSLEKIVKSFKIKLDS------EGQY 556 Query: 181 HDAMADVYAT--IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGA 238 H+A+ D AT I + L + ++F++ L +D+ +P HV+ + Sbjct: 557 HNALFDARATALIFLEMLEQLEAQKIFNFY-------DLQGSLDIKFERPY-HVNIIVKN 608 Query: 239 WRGN 242 +G Sbjct: 609 KKGY 612 >UniRef50_D1W6A9 UvrD/REP helicase n=3 Tax=Prevotella RepID=D1W6A9_9BACT Length = 904 Score = 51.9 bits (123), Expect = 6e-05, Method: Composition-based stats. Identities = 48/218 (22%), Positives = 79/218 (36%), Gaps = 23/218 (10%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 +Q + D ET G + D Q AA+R V G V + + D +PQ + Sbjct: 518 EQQDIVVFDTETTGLNVFEDDIVQIAAVRMRQGKVVPGSSFVVFMETDRD-IPQQLGEIE 576 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 + + R + A + +LG+N +D + R A Sbjct: 577 NPLIAEMQRHVLHSHAEGLQMFMDYVG--DSMLLGHNA-DYDYHILDFNLQRYLP---AI 630 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 S + R+ LD ++ L P L ++L+HL +E NAH A AD Sbjct: 631 SLKEQCPRY--LDSLKLVRLLEPN----------LREYKLKHLLSVLHLEGENAHLADAD 678 Query: 187 VYATIAMAKLVKTRQ----PRLFDYLFTHRNKHKLMAL 220 V AT + + + P +++ R K + L Sbjct: 679 VDATCNVVRHCYGKAKLMVPSQLEWIRHPRFKKRAEVL 716 >UniRef50_C9LHX7 Exonuclease n=1 Tax=Prevotella tannerae ATCC 51259 RepID=C9LHX7_9BACT Length = 256 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 62/195 (31%), Gaps = 29/195 (14%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 M +F D E G A DR + + I+ + G E + + Sbjct: 1 MTQLNLTRPIIFFDIEATGLQIARDRIVELSYIKVFPD----GREESKTLRFNPEMHISA 56 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCIL-GYNNVRFDDEVTRNIFYRNF 120 A + GI ++ F + L + ++C L G+N+ FD + F R Sbjct: 57 EATAVNGIKDEDVADC----PTFKEKSGELTAIFQSCDLAGFNSNVFDVPMLVEEFARAG 112 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 D + L+DV + L P + NA Sbjct: 113 SDFDITKSK-------LVDVQTIYHKLEPRNLIAAYKFYCNKDL-------------HNA 152 Query: 181 HDAMADVYATIAMAK 195 H AMAD AT + K Sbjct: 153 HTAMADTQATYEVLK 167 >UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BCD0_PARDP Length = 706 Score = 51.5 bits (122), Expect = 6e-05, Method: Composition-based stats. Identities = 41/190 (21%), Positives = 72/190 (37%), Gaps = 31/190 (16%) Query: 7 QQSTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 ++ ++ D ET G +PA D Q A+R + + GE P + +P P ++ Sbjct: 512 ERLSYTVFDTETTGLNPAQGDEIIQIGALRILNGKLLRGERFDQLVDPGRE-IP-PESIP 569 Query: 66 ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA 125 GI P+ + + A H+ T ++G+N V FD + Sbjct: 570 YHGIHPEMVQGQPRI-AEVLPAFHAY--ASDTVLVGHN-VAFDMRFLQ-----------L 614 Query: 126 WSWQHDNSRWD--LLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDA 183 R+D +LD + +P PS LE + G+E + H+A Sbjct: 615 KEAATG-LRFDQPVLDTLLLASIAQPHE----------PSHSLEAIAARLGVEITQRHNA 663 Query: 184 MADVYATIAM 193 ++D T + Sbjct: 664 LSDALVTAEV 673 >UniRef50_D1PV56 DNA-directed DNA polymerase III epsilon subunit n=9 Tax=Prevotella RepID=D1PV56_9BACT Length = 287 Score = 51.5 bits (122), Expect = 7e-05, Method: Composition-based stats. Identities = 38/180 (21%), Positives = 56/180 (31%), Gaps = 24/180 (13%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 + D ET G A DR Q + I+ D + N E + + P P + T IT Sbjct: 9 LIIFDLETTGLDLATDRIIQISYIKVDPQGNE--ERKSLFVNPEKPIPPFVQEL--THIT 64 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 A + F G+N+ RFD + F R D + Sbjct: 65 DDMV-KDAPTFKQIAKSLQETFA--GCDFAGFNSNRFDVPMLAEEFLRAGVD-----FDF 116 Query: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190 R L+D + + P + ++E AH A D AT Sbjct: 117 QRCR--LIDAQNIFHKMEPRNLAAAYRF--YTGNKMED--------DFQAHRADEDTEAT 164 >UniRef50_Q041D1 DNA polymerase III, alpha subunit (Gram-positive type) n=20 Tax=Lactobacillus RepID=Q041D1_LACGA Length = 320 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 50/267 (18%), Positives = 84/267 (31%), Gaps = 41/267 (15%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 + D ET G P DR + ++ V+ P + +P L Sbjct: 30 PENYTLIDVETTGLSPYRDRITEMGGLKVRHG-EVVATFSELVKFPDSNKVPTFITKL-N 87 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 GI KG + + F I+GYN V FD F + + Y + Sbjct: 88 GIDEAAIEEKGLPVQEAIKK-YREFIGSDP-IVGYN-VNFD-----LNFVYDLAEKYHLT 139 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 ++ D +DV R + P+ + L+ + + N I + H + D Sbjct: 140 VLNN----DYVDVYRLARSFYPQE---------RHNRLLDCMHRMN-IAENQEHRGLDDC 185 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 247 T K V +LF R + + L + +V + F + Sbjct: 186 LDT----KKVFDEFHKLFKQEHMLRAQEAVKTLDLTSEWPDIVKQTQAFHSPF------- 234 Query: 248 PLAWHPENRNAVIMVDLAGDISPLLEL 274 ++ VI DL D L + Sbjct: 235 ------IHKKVVIAGDLDLDEYELTNV 255 >UniRef50_Q2FLJ5 Exonuclease n=1 Tax=Methanospirillum hungatei JF-1 RepID=Q2FLJ5_METHJ Length = 215 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 46/197 (23%), Positives = 70/197 (35%), Gaps = 35/197 (17%) Query: 11 FLFHDYETFGT-----HPA-----LDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 +L D E+ G P R Q A I TD E + E + Y P +P Sbjct: 3 YLIFDTESTGLPREEKDPFHYPEYWPRMVQLAWILTDGETIITEENYLIY--PDGFVIPS 60 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 ++ I GIT + AR +G+ + ++G+N V FD + + + R Sbjct: 61 -SSMEIHGITNERAREEGKPVLEVLSVFSESIKQAD-VLVGHN-VSFDRSIVTSEYSRAK 117 Query: 121 YD------PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANG 174 + PY + + +V + G WP + L Sbjct: 118 LNAPILKLPYHCTMKTST------EVCKLPAKGGRRGYKWPSLSE------LHQFLFEEP 165 Query: 175 IEHSNAHDAMADVYATI 191 EH AHDA ADV A + Sbjct: 166 FEH--AHDASADVRACM 180 >UniRef50_B8L493 Exonuclease n=1 Tax=Stenotrophomonas sp. SKA14 RepID=B8L493_9GAMM Length = 188 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 28/129 (21%), Positives = 46/129 (35%), Gaps = 13/129 (10%) Query: 12 LFHDYETFGTHPALDRP---------AQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 62 F+D ET G PA P Q AA ++ + KP +P+ Sbjct: 5 FFYDTETTGL-PAFSEPSDAPHQPHLVQVAASLVNATTRKVISSIDVLVKPDGWTIPE-E 62 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 I GIT ++A G +E+ + ++ + +G+ FD + R R Sbjct: 63 VTRIHGITNEQAEQCGLDESLVTELVLDMWRLSD-VRIGHVE-SFDARILRIALKRYATA 120 Query: 123 PYAWSWQHD 131 A W+ Sbjct: 121 QVADEWKAG 129 >UniRef50_Q38X67 Putative ATP-dependent helicase, DinG family n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38X67_LACSS Length = 944 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 66/192 (34%), Gaps = 33/192 (17%) Query: 15 DYETFGTH-PALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL-ITGITPQ 72 D ET GT+ DR QF + I + P D P + +T IT Sbjct: 11 DLETTGTNIKDGDRIIQFGCALVQNG--KIIQTISQDVNPLRDV---PTKIQHLTHITAD 65 Query: 73 EARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDN 132 + E A + + + T + +N + FD R P + Sbjct: 66 QLELAPIFE-DLAPTLVEILS--GTVFVAHN-INFDLPFLNGELTRVGLQPLDLAG---- 117 Query: 133 SRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIA 192 +D + + PE PS+RL+ LT+ IEH N H A +D T Sbjct: 118 -----IDTVELAQIILPEA----------PSYRLQDLTQLLEIEHDNPHQADSDALVT-- 160 Query: 193 MAKLVKTRQPRL 204 AKL RL Sbjct: 161 -AKLFLKLSARL 171 >UniRef50_Q9Y3B8 Oligoribonuclease, mitochondrial n=17 Tax=Euteleostomi RepID=ORN_HUMAN Length = 237 Score = 51.1 bits (121), Expect = 8e-05, Method: Composition-based stats. Identities = 25/120 (20%), Positives = 41/120 (34%), Gaps = 9/120 (7%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL-- 58 M ++ D E G D+ + A + TDS+ N++ E K D+ L Sbjct: 33 MAAGESMAQRMVWVDLEMTGLDIEKDQIIEMACLITDSDLNILAEGPNLIIKQPDELLDS 92 Query: 59 ------PQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVT 112 G +T + + E F + + T P C L N+V D + Sbjct: 93 MSDWCKEHHGKSGLTKAVKESTITLQQAEYEFLSFVRQQ-TPPGLCPLAGNSVHEDKKFL 151 >UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=3 Tax=Betaproteobacteria RepID=A1K872_AZOSB Length = 734 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 38/194 (19%), Positives = 61/194 (31%), Gaps = 45/194 (23%) Query: 10 TFLFHDYETFGTHPAL-DRPAQFAAIRT-------DSEFNVIGEPEVFYCKPADDYLPQP 61 T+ D ET G +P+ D Q A+R F + +P C+P + Sbjct: 543 TYTVFDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLIDP----CRPLPE----- 593 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 + + GIT G+ F T ++ +N FD + Sbjct: 594 ESARVHGITADMLA--GQPVIEAVLPSFHAFAA-DTVLVAHNA-AFDMRFLQ-------- 641 Query: 122 DPYAWSWQHDNSRWD--LLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSN 179 R+D +LD + + P S RLE + + GI Sbjct: 642 ---LKEDLTG-LRFDQPVLDTLLLSAVIHPN----------QDSHRLEAIAERLGITVVG 687 Query: 180 AHDAMADVYATIAM 193 H A+ D T + Sbjct: 688 RHTALGDAMVTAEV 701 >UniRef50_C9RIR1 DNA polymerase III, epsilon subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIR1_FIBSS Length = 215 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 64/206 (31%), Gaps = 29/206 (14%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEF-------NVIGEPEVFYCKPADDYLPQ 60 F+ D ET G D + A++ E +I E + + L Sbjct: 5 PPKFVAFDLETTGLVNRKDEIIEIGAVKFTVEVKNGRVVPKLISEFDTL---VKPNMLIP 61 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 A + IT + + + F P + +L +N FD R + +N Sbjct: 62 AEATNVNHITDKMVEN-APPVGEALKQF-TAFCGPGSILLAHNA-NFDASFLRTAYEQN- 117 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 P + N D L + + PE N + ++ I+ Sbjct: 118 --P---QFTPGNPVVDSLAISKTI---MPELANHKLGFMANMFMKRGEISMT--IDEEKM 167 Query: 181 HDAMADVYATIA-----MAKLVKTRQ 201 H ++ D + + + +K ++ Sbjct: 168 HRSVYDCEMLMEVFVALLRRRLKEKE 193 >UniRef50_C2BET5 3'-5' exonuclease and CRISPR-associated Cas2 family protein n=1 Tax=Anaerococcus lactolyticus ATCC 51172 RepID=C2BET5_9FIRM Length = 295 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 68/202 (33%), Gaps = 29/202 (14%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 62 + ++ D ET G P DR + AI+ E K ++ Sbjct: 121 KSQEHTKAYIIIDLETTGLDPINDRIIEIGAIKIGKENKEYSSIIWQDIKLSEKI----- 175 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 ITGI+ ++ KG++E ++GYN + FD + R Sbjct: 176 -SNITGISDEDI-KKGKDEKNAINEFIDFIGEDT--LVGYN-INFDIKFINESLKRQEKP 230 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHD 182 + N +D++ ++ L +++LE + K GI + H Sbjct: 231 ------KIKNMTYDVMQYVKNDKLF-------------LKNYKLETVIKEYGINKNVPHR 271 Query: 183 AMADVYATIAMAKLVKTRQPRL 204 A+ DV + + RL Sbjct: 272 ALEDVKIIQKLIAKLNKLVKRL 293 >UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, putative n=19 Tax=Listeria RepID=B8DC27_LISMH Length = 928 Score = 51.1 bits (121), Expect = 9e-05, Method: Composition-based stats. Identities = 42/186 (22%), Positives = 66/186 (35%), Gaps = 30/186 (16%) Query: 7 QQSTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 +Q ++ D ET G + DR QFAA F G+ Y + P P + Sbjct: 2 KQKRYIVVDLETTGNQASREDRIIQFAAC-----FVESGKRLETYTTFLNPEKPIPAFIQ 56 Query: 66 -ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 +TGI+P++ + E A I L T + +N V FD R Sbjct: 57 ELTGISPKDVKNAPLFE-DVAPIIAGLLE--DTIFVAHN-VSFDWTFLEREMTRAGI--- 109 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 + LD + + P G+ S++L+ L+ + H H A Sbjct: 110 ------SLGKMKKLDTVELARIMYP----------GIDSYKLQDLSDEFNLGHDKPHRAD 153 Query: 185 ADVYAT 190 +D T Sbjct: 154 SDAEVT 159 >UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N1K0_9GAMM Length = 488 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 72/219 (32%), Gaps = 31/219 (14%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 M + + + D ET G + DR + A I + +V+ + +P Sbjct: 1 MTDLSAFPPSMVILDCETTGGRASRDRLTEIALIEV-EDGHVVKRWQTLLNPLRP--IP- 56 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 P +TGIT A + F LF ++ +N RFD R F R Sbjct: 57 PWITRLTGIT----DATVADAPTFDEIADELFACLDGKVIVAHNARFDYSFLRQSFQR-- 110 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 + N L ++ L PE S L+ + + G+ N Sbjct: 111 -----CGYTLGNK---TLCSVKLSRQLFPE----------HRSHGLDRIIERLGLTIDNR 152 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMA 219 H AMAD +A + + + P K +L Sbjct: 153 HRAMADTEVLLAFFEHISAQFPA---TTIRSACKQQLKR 188 >UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Treponema pallidum RepID=DPO3E_TREPA Length = 215 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 62/223 (27%), Gaps = 31/223 (13%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 + F D ET G DR + A+ D + +I D P I Sbjct: 11 EHVAFTAFDTETTGLKAEEDRIIEIGAVTFDRK-GIIARFSTL---IFPDRAIPPDVSKI 66 Query: 67 TGITPQEA-RAKGENE--AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 IT E + F+ I T ++ +N FD E Sbjct: 67 NHITDDMLVNKPRFCEIVSDFSRFIK------GTVLVAHNA-NFDVEFLNAEL------- 112 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDA 183 + L + YA+ G +RL++L G+ AH A Sbjct: 113 ------SLCKKQPLSHKVVDTYAMAQAVFP----GLGRHQYRLQNLALQFGLTVHAAHRA 162 Query: 184 MADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQM 226 D + + + + + H + LI Q Sbjct: 163 EDDARVCMELFTTMIAHHAKQNGHCVNHAQSPTIKKLIQEIQA 205 >UniRef50_A8RD59 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RD59_9FIRM Length = 1447 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 38/187 (20%), Positives = 64/187 (34%), Gaps = 34/187 (18%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAA-IRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 ++ T+ D ET G D +F I D + + KP +P P ++ Sbjct: 395 EEGTYCVFDLETTGLSSRFDHIIEFGGQIVKDRT---CIKSLQLFIKPP---VPIPAHIV 448 Query: 66 -ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 +TGI+ + ++ A A +I + ++ +N FD + R P Sbjct: 449 ELTGISEEHV-RNAKSFAECADQILDFIG--DSILVAHNA-DFDYNFLNSELVRIGRKPL 504 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSNAHD 182 DN D LD+ R+ +RL + ++ GI AH Sbjct: 505 ------DNPVIDTLDLARSM--------------QDRKGYRLGQIARSYGIRYDEDVAHR 544 Query: 183 AMADVYA 189 A D Sbjct: 545 ADYDAEV 551 >UniRef50_C0W0V1 DNA polymerase III subunit epsilon n=1 Tax=Actinomyces coleocanis DSM 15436 RepID=C0W0V1_9ACTO Length = 232 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 42/204 (20%), Positives = 75/204 (36%), Gaps = 25/204 (12%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDY-LPQPGAVLI 66 L D ET G A DR A+ V+ + + + +PQ A+ + Sbjct: 5 NGNLLGFDLETTGVDTARDRIVT-ASYEVRCGSEVLEQVTLLF---NPGVEIPQ-SAIDV 59 Query: 67 TGITPQEARAKGENEA----AFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 GIT + A+A+G + AA++ S + +G+N V+FD + N R Sbjct: 60 HGITNERAQAEGLDPRVGLEQLAAKLVSYLSEGAPL-VGFN-VQFDVTLLENELRRYGL- 116 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEH--SNA 180 P R + P ++ + +L L + GI Sbjct: 117 PTVAERLGG----------RFAPIVDPLVLDRELDRWRKGKRKLVDLLEVYGIAVDPDEL 166 Query: 181 HDAMADVYATIAMAKLVKTRQPRL 204 H + DV T+++ + + + P+L Sbjct: 167 HQSDVDVSMTLSLLQAMVRKYPQL 190 >UniRef50_B8GAH5 DNA polymerase III, epsilon subunit n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8GAH5_CHLAD Length = 233 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 43/197 (21%), Positives = 67/197 (34%), Gaps = 30/197 (15%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEA 74 D ET G P D A+ ++ ++ + +P P ++ + +TP+E Sbjct: 42 DVETTGLDPRHDALIAIGAVNVENGRVLLKQTWHSLIRPPPGREPSVESIRVHHLTPEEL 101 Query: 75 R---AKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHD 131 R E A I V + +VRF + + P+ Sbjct: 102 RDAPPPAEVLAELLRLIAGRVLVVHVAEI---DVRFINAALK---------PF-----GG 144 Query: 132 NSRWDLLDVMRACYALRPEGINW----PENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 R +LD R L W P D P+ L LT A G+ H+A+ D Sbjct: 145 RLRRPILDTARLAMTLHLNA-QWLGELP-RDMPAPAVELRGLTGALGLPIYAQHNALNDA 202 Query: 188 YAT----IAMAKLVKTR 200 T IA A L+ + Sbjct: 203 VTTAQLFIAQATLLADQ 219 >UniRef50_D0WP21 Putative DNA polymerase III epsilon subunit n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WP21_9ACTO Length = 240 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 43/218 (19%), Positives = 70/218 (32%), Gaps = 23/218 (10%) Query: 14 HDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG-AVLITGITPQ 72 D ET G P DR + + V E AD + P A + GIT + Sbjct: 16 FDTETTGIDPKRDRLVTCSLV------AVTEEGVSKRYWLADPGVEIPERAGAVHGITTE 69 Query: 73 EARAKGENEAAFAARIHSLF---TVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 ARA+G + +L + +N +D + + R+ P Sbjct: 70 RARAEGRPSKEVLEEVAALLAEHMGRGHPAVAFNA-TYDFTLLESELDRHGL-PTLAERL 127 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGI-EHSNAHDAMADVY 188 ++ V+ R G RLE L + G+ + H+A ADV Sbjct: 128 GG----EVFPVVDPYLLDRSAD----RYRKGKR--RLEDLCRHYGVHAEDDFHNAEADVL 177 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQM 226 AT+ + + + P L + + D Sbjct: 178 ATLRLLAAIVRKFPELARAELEAIQERECETHADFMAF 215 >UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon n=2 Tax=Bacillaceae RepID=A3I8T8_9BACI Length = 914 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 46/202 (22%), Positives = 65/202 (32%), Gaps = 28/202 (13%) Query: 15 DYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQE 73 D ET G PA DR Q A I ++ I + P +P L T IT ++ Sbjct: 2 DLETTGHSPANGDRMIQIA-IVIMKDW-EIERTYTKFINPGK-AIPSFIQDL-THITNED 57 Query: 74 ARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNS 133 + E A I+ L + +N FD + F R W + Sbjct: 58 VKDSYPFE-EHADYIYELLA--DCVFVAHNA-DFDLSFLQAEFKRAGLP--KWQGKK--- 108 Query: 134 RWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAM 193 +D + L P + F+L L IE +NAH A D AT + Sbjct: 109 ----MDTVELAKILFPMSL----------GFKLGDLAADLNIELANAHRADDDARATAEL 154 Query: 194 AKLVKTRQPRLFDYLFTHRNKH 215 K L +K Sbjct: 155 FKCCWKELLNLPQLTLEQMHKR 176 >UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Deinococcus RepID=Q1IXC1_DEIGD Length = 180 Score = 50.8 bits (120), Expect = 1e-04, Method: Composition-based stats. Identities = 24/114 (21%), Positives = 39/114 (34%), Gaps = 16/114 (14%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIR-TDSEFNVIGEPEVFYCKPAD---DYLPQPG-AV 64 + D ET G P D + A+R D E +P + + +P P A Sbjct: 2 NVVVFDLETTGLSPERDAIVEIGALRVVDGRVVESERFETL-VRPQNAAGEVVPIPWRAQ 60 Query: 65 LITGITP---QEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNI 115 + GI+ Q+A G+ F + + +N+ FD R Sbjct: 61 RVHGISDAMVQDAPELGQVLPEFLDFVGRS-------AVAAHNIGFDSSFMRAA 107 >UniRef50_A6VD64 Oligoribonuclease n=25 Tax=Proteobacteria RepID=ORN_PSEA7 Length = 180 Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 37/214 (17%), Positives = 68/214 (31%), Gaps = 48/214 (22%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLP----- 59 + ++ D E G P D + A I TDS+ N + E V ++ L Sbjct: 1 MQNPQNLIWIDLEMTGLDPDRDVIIEMATIVTDSDLNTLAEGPVIAIHQPEEVLAGMDEW 60 Query: 60 ----QPGAVLITGI---TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVT 112 + L + T A A+ + A + + C N++ D Sbjct: 61 NTRQHGQSGLTQRVRESTVSMAEAEAQTLAFLEQWVPKRSS--PICG---NSICQD---- 111 Query: 113 RNIFYRNF--YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLT 170 R YR+ + Y +++ D+ + P+ SF+ Sbjct: 112 RRFLYRHMPRLEGYFH-YRN----LDVSTLKELAARWAPQV---------RESFK----- 152 Query: 171 KANGIEHSNAHDAMADVYATIAMAKLVKTRQPRL 204 N H A+ D+ +IA + + +L Sbjct: 153 ------KGNTHLALDDIRESIAELRHYRDHFIKL 180 >UniRef50_A5KRR8 Oligoribonuclease n=2 Tax=candidate division TM7 RepID=A5KRR8_9BACT Length = 184 Score = 50.4 bits (119), Expect = 1e-04, Method: Composition-based stats. Identities = 31/141 (21%), Positives = 47/141 (33%), Gaps = 11/141 (7%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCK------PADD 56 D K+ + L+ D E G P DR + AAI TD F + E + DD Sbjct: 5 ADMKKHAKLLWLDLEMTGLDPQRDRVLEVAAIATDWNFEEMAVIESVVHQSPKVLDLMDD 64 Query: 57 YL--PQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRN 114 ++ + L + + E I S++ +L N++ D R Sbjct: 65 WVRSQHASSGLTERVRASDVSETD-AEDILLQFIDSVYKDGDPVVLAGNSIHQDRRFIRQ 123 Query: 115 IFYRNFYDPYAWSWQHDNSRW 135 Y D D S W Sbjct: 124 --YWQRLDARLHYRMLDVSAW 142 >UniRef50_B5YGV6 DNA polymerase III alpha subunit n=1 Tax=Thermodesulfovibrio yellowstonii DSM 11347 RepID=B5YGV6_THEYD Length = 230 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 35/194 (18%), Positives = 72/194 (37%), Gaps = 23/194 (11%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 ++ F+ D E G + D AI+ IG+ P+ + +++I Sbjct: 20 SETDFVVVDTELTGLNEFRDNIIAIGAIKMKGRTIKIGDIFYRTVSPSTKKF-RKESIMI 78 Query: 67 TGITPQEARAKGENEA---AFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 ITP E + E F + V + ++ F + RN R ++P Sbjct: 79 HEITPSELEKCPQIEPILREFIKFSKNCLVVGHCVDI---DLTFLKKEIRNNL-REIFEP 134 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDA 183 ++ + ++ + ++ E + P + S LE + + IE HDA Sbjct: 135 FS-----------IDTLLIYKWLIKKEIL--PSDFSNKNS--LEDIALSLDIEPKELHDA 179 Query: 184 MADVYATIAMAKLV 197 ++D + T + + + Sbjct: 180 LSDAFITAQIFQRL 193 >UniRef50_B7GHT3 DNA polymerase III, epsilon subunit and Rad3-related DNA helicase n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GHT3_ANOFW Length = 880 Score = 50.4 bits (119), Expect = 2e-04, Method: Composition-based stats. Identities = 40/186 (21%), Positives = 61/186 (32%), Gaps = 30/186 (16%) Query: 7 QQSTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 F+ D ET G P DR Q + + + + + + +P D +P + Sbjct: 1 MNDRFVVVDIETTGNAPKKEDRIIQIGFVVIEGD--KVKKRFSTFVQPERD-IP----LF 53 Query: 66 ITGIT-PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 I +T A A + L + +NV+FD + F R+ P Sbjct: 54 IQQLTGIDHAMVHDAPPFQHIAAM--LVEQWEGAYFVAHNVQFDWAFLQEEFIRSGIQPP 111 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 LLD + L P S++L HL +A H H A Sbjct: 112 TCR---------LLDTVELARFLMPT----------QSSYKLNHLAEALSFAHDRPHQAD 152 Query: 185 ADVYAT 190 D AT Sbjct: 153 YDAEAT 158 >UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG n=1 Tax=Carnobacterium sp. AT7 RepID=A8UAR2_9LACT Length = 939 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 40/201 (19%), Positives = 66/201 (32%), Gaps = 28/201 (13%) Query: 5 GKQQSTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 63 + T+ D ET G + A DR QF + + + V+ Sbjct: 1 MNHKDTYAVVDIETTGGNVASGDRMIQFGCVLLEGD-QVVHRFAT---NINPLTSIPKQI 56 Query: 64 VLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 +TG++ + E AA I++L I+ +N ++FD R Sbjct: 57 EHLTGLSNKTVAQAPYFE-DIAATIYNLL--DGCIIIAHN-IQFDYTFLSAELQRCGMPA 112 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDA 183 +D + L P S+RL L IEH+N H A Sbjct: 113 LQNKG---------IDTVELAQVLLPTE----------SSYRLNDLVSKFNIEHTNPHQA 153 Query: 184 MADVYATIAMAKLVKTRQPRL 204 +D T + ++K + L Sbjct: 154 DSDAAVTAELFLVLKQKLKEL 174 >UniRef50_UPI0000D55BE7 PREDICTED: similar to three prime repair exonuclease 1 n=1 Tax=Tribolium castaneum RepID=UPI0000D55BE7 Length = 319 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 24/120 (20%), Positives = 41/120 (34%), Gaps = 9/120 (7%) Query: 3 NDGKQQSTFLFHDYETFG---THPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLP 59 Q TF+F D ET G R + A+ ++ +G K + + P Sbjct: 26 TSMSQIKTFVFLDLETTGLPHLEHNKTRITELCAVSVRADHIELGCFPRVQNKLSLCFNP 85 Query: 60 ----QPGAVLITGITPQEARAKGENEAAFAARIHS--LFTVPKTCILGYNNVRFDDEVTR 113 P A +TG++ + + I C++ +N RFD + R Sbjct: 86 MKMISPEATSLTGLSNDLLEYQASFSSDAVDVIRKWLEMNQKPICLVAHNGNRFDYPILR 145 >UniRef50_C9PFC2 DNA polymerase III epsilon subunit n=2 Tax=Vibrio RepID=C9PFC2_VIBFU Length = 238 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 65/206 (31%), Gaps = 32/206 (15%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIG--EPEVFYCKPADDYLPQPGAVL 65 Q L D+ET G D+ + I E + + +++ AV Sbjct: 50 QHDLLAFDFETSGVDAGHDQILSLG--WVGMTLDQIDVAASEEIFVR-HPEFVTADSAV- 105 Query: 66 ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVR-FDDEVTRNIFYRNFYDPY 124 I ITPQ A G R+ + G R F + R F + + Sbjct: 106 INHITPQVL-AHGVTLDEAMDRLFGQLAGKIALVHGACIERAFVAQYMRERF---AIEHF 161 Query: 125 AWSWQHDNSRWDLLDVMR-ACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDA 183 W D L + + YA + E SF+L + + NAH A Sbjct: 162 PCVW------VDTLQIEKQMTYAGKTEC---------GTSFQLNDVRTRYALPQYNAHSA 206 Query: 184 MADVYATIA-----MAKLVKTRQPRL 204 D AT M L K P++ Sbjct: 207 AIDALATAELFTAQMKSLFKNHPPKV 232 >UniRef50_D1PSL1 Putative DNA polymerase III, epsilon subunit n=1 Tax=Subdoligranulum variabile DSM 15176 RepID=D1PSL1_9FIRM Length = 318 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 46/203 (22%), Positives = 76/203 (37%), Gaps = 37/203 (18%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKP--ADDYLPQPGAVLITGITPQ 72 D ET G D Q + + D+ ++ Y KP +D+ P A + IT + Sbjct: 123 DIETTGLDFNQDEILQVSILDIDTGEVLLDS----YVKPYFTEDW---PEARRVNHITKE 175 Query: 73 EARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDN 132 R++ + KT I+GYN FD+ F Y S+ + Sbjct: 176 MV-CNAPYIYELLPRLNQVLAQVKT-IVGYNFTGFDN---------GFLTRYGASFNDET 224 Query: 133 SRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGI-----EHSNAHDAMADV 187 DL ++ A Y G P++ D F+ ++L+ AH+++AD Sbjct: 225 IVEDLSNIFAAIY-----GEFSPKHGD----FKFKNLSTCADYFGYDWGEETAHNSLADC 275 Query: 188 YATIAMAKLVKTRQPRLFDYLFT 210 AT A K Q ++ L+ Sbjct: 276 RAT---AFCYKKTQEEMYQELYQ 295 >UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogaceae RepID=DPO3_THEP1 Length = 1367 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 76/225 (33%), Gaps = 34/225 (15%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 + +TF+ D+ET G P +D + A++ + ++ E KP+ + + I Sbjct: 354 ENATFVVLDFETTGLDPQVDEIIEIGAVKI-QDGQIVDEYHTL-IKPSREI--SRRSSEI 409 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 TGIT + K E + I+ +N FD R W Sbjct: 410 TGITQEMLENKRSIE-EVLPEFLGFLE--NSIIVAHNA-NFDYRFLR-----------LW 454 Query: 127 SWQHDNSRWDLLDVMRACYALRP--EGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 + W+ RP + + ++ + S+ L+ + + G+ H A+ Sbjct: 455 IKKVMGLDWE-----------RPYIDTLALAKSLLKMRSYSLDSVVEKLGLGPFRHHRAL 503 Query: 185 ADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPL 229 D T + ++ + L ID +KP Sbjct: 504 DDARVTAQVFLRFVEMMKKI--GITKLSEIENLKDTIDYTALKPF 546 >UniRef50_Q21VB4 DNA polymerase III, epsilon subunit n=7 Tax=Betaproteobacteria RepID=Q21VB4_RHOFD Length = 476 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 37/192 (19%), Positives = 69/192 (35%), Gaps = 28/192 (14%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 ++ D ET G +P DR + AA+R ++ + P +TG Sbjct: 3 PCYVLLDLETTGGNPVHDRITEIAAVRIENG-QEVARWSTL---VNPGCSISPFIQHLTG 58 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 I+ +G A+ H L + ++ +N VRFD N Sbjct: 59 ISNAMV--RGAPGFETVAQ-HLLALLDGAVLVAHN-VRFDHGFLLNEL------------ 102 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 +R D+ ++ +R + +P++ L+ + + +GI H AM DV Sbjct: 103 ----ARLDVALRVKTLCTVRLSRLLYPQHKGHG----LDAIMQRHGIRTLERHRAMGDVE 154 Query: 189 ATIAMAKLVKTR 200 A ++ + Sbjct: 155 VMQAWLQIARQE 166 >UniRef50_B9F7W0 Putative uncharacterized protein n=3 Tax=Poaceae RepID=B9F7W0_ORYSJ Length = 901 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 68/233 (29%), Gaps = 64/233 (27%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFA----------AIRTDSEFNVIGEPEVFYCKPADDY 57 +T L D ET G +R +FA I+T N E + Y Sbjct: 698 PATILVFDIETTGFSRRYERIIEFAVRDLMGGKNSTIQT--LINPEREIKNAY------- 748 Query: 58 LPQPGAVLITGITPQEARAKGENEA-AFAAR-----IHSLFTVPKTCILGYNNVRFDDEV 111 + GI+ F + + +N FD Sbjct: 749 --------VHGISSSMVCKPDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSFDVPF 800 Query: 112 TRNIFYRNFYD-PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLT 170 F R+ + P W + D L + R DG +L+ ++ Sbjct: 801 LMYEFQRSKIEMPGDWLF------VDTLPIARQL-----------IGSDGE---KLKSVS 840 Query: 171 KANGIEH------SNAHDAMADVYATIAMAKL----VKTRQPRLFDYLFTHRN 213 N EH +AH AM DV + + +K P+L + F + Sbjct: 841 LDNLREHYKIPLAGSAHRAMQDVITLCYVLQKLTFELKLTVPQLLERSFRVSD 893 >UniRef50_A8LH88 Exonuclease RNase T and DNA polymerase III n=2 Tax=Actinomycetales RepID=A8LH88_FRASN Length = 389 Score = 50.0 bits (118), Expect = 2e-04, Method: Composition-based stats. Identities = 43/195 (22%), Positives = 58/195 (29%), Gaps = 30/195 (15%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEA 74 D ET G P DR A + T ++ V P P V I G+T Q Sbjct: 81 DVETTGLSPTRDRVLSVAVVLTAADGTVEHRWSTL---LDPGCDPGP--VHIHGLTRQRL 135 Query: 75 RAKGENEAAFAA-RIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNS 133 G A A + L ++ +N FD +R Sbjct: 136 A--GSPTFAAVADEVAGLLA--GRVLVAHNA-AFD--------WRMLAGEAMRIGTTIPV 182 Query: 134 RWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAM 193 W L + A G+ P S RL L G+ AHDA D A+ Sbjct: 183 EWRLCTLTLASRL----GLELP-------SLRLASLAAYWGVVQRRAHDAQDDAEVLAAL 231 Query: 194 AKLVKTRQPRLFDYL 208 + R + L Sbjct: 232 LPRILQRAADQYLEL 246 >UniRef50_C0A8I6 DNA-directed DNA polymerase n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A8I6_9BACT Length = 197 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 72/198 (36%), Gaps = 27/198 (13%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL-ITG 68 + D ET G P + Q AA+R + + E Y P P P + +TG Sbjct: 2 NLVIFDLETTGFSPRWNDIIQIAAVRL-VDGRISDETFSTYVSPRR---PVPDHITELTG 57 Query: 69 ITPQEARAKGENEAAFAARIHSLF--TVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 IT +A E + A R + F V T ++ +N RFD R I Sbjct: 58 IT--DADVADAPETSDALRAFARFVGDVGPTTLVAHNGHRFD---MRFI----------- 101 Query: 127 SWQHDNSRWDL-LDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMA 185 + L + +R ++ WP +E L GI HDA A Sbjct: 102 --AESCTLHGLPMRPIRFIDSIWLSKKLWPAESLHNLDVIVERLGIETGITGHRRHDARA 159 Query: 186 DVYATI-AMAKLVKTRQP 202 DV+ A+ ++++ P Sbjct: 160 DVHLLANAVRRMIQNLFP 177 >UniRef50_D1VLC1 DNA polymerase III, epsilon subunit n=1 Tax=Frankia sp. EuI1c RepID=D1VLC1_9ACTO Length = 615 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 41/191 (21%), Positives = 63/191 (32%), Gaps = 25/191 (13%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 TF+ D ET GT P +F A++ V+ E + + +P P ++TGI Sbjct: 51 TFVVFDLETTGTGPTTAEITEFGAVKVRGG-EVVAEFATL-VRASTG-IP-PLITVLTGI 106 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 T A A T ++ +N FD + R Y W Sbjct: 107 TDAML-ATAPPLAEVLPAFLEFIQ--GTVLVAHNA-GFDLSFLKAACERVGYPVPTWEH- 161 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 LD R + D P+ +L L + H A+AD A Sbjct: 162 --------LDTARLARRI--------VTRDESPNNKLSSLARLFRARTEPCHRALADARA 205 Query: 190 TIAMAKLVKTR 200 T+ + + R Sbjct: 206 TVDVLHGLFER 216 >UniRef50_Q10MN9 Os03g0301400 protein n=4 Tax=Poaceae RepID=Q10MN9_ORYSJ Length = 313 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 43/233 (18%), Positives = 68/233 (29%), Gaps = 64/233 (27%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFA----------AIRTDSEFNVIGEPEVFYCKPADDY 57 +T L D ET G +R +FA I+T N E + Y Sbjct: 110 PATILVFDIETTGFSRRYERIIEFAVRDLMGGKNSTIQT--LINPEREIKNAY------- 160 Query: 58 LPQPGAVLITGITPQEARAKGENEA-AFAAR-----IHSLFTVPKTCILGYNNVRFDDEV 111 + GI+ F + + +N FD Sbjct: 161 --------VHGISSSMVCKPDIPRFREFIPLLLQYVLSRQMADKPVLWVAHNGRSFDVPF 212 Query: 112 TRNIFYRNFYD-PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLT 170 F R+ + P W + D L + R DG +L+ ++ Sbjct: 213 LMYEFQRSKIEMPGDWLF------VDTLPIARQL-----------IGSDGE---KLKSVS 252 Query: 171 KANGIEH------SNAHDAMADVYATIAMAKL----VKTRQPRLFDYLFTHRN 213 N EH +AH AM DV + + +K P+L + F + Sbjct: 253 LDNLREHYKIPLAGSAHRAMQDVITLCYVLQKLTFELKLTVPQLLERSFRVSD 305 >UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit family protein n=11 Tax=Rhodobacteraceae RepID=A3X8N6_9RHOB Length = 484 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 49/211 (23%), Positives = 71/211 (33%), Gaps = 37/211 (17%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA-VL 65 Q F D ET G P D Q A+R + + GE P P P A Sbjct: 273 NQLCFAVFDTETTGLLPHKDDIVQIGAVRVLNGRLIEGEELNTLVDPGR---PIPEASTR 329 Query: 66 ITGITPQEARAKGENE-AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 + G++ A +G + A AA H LF + +N FD R Sbjct: 330 VHGVS--TAMVQGAPDIAEAAAEFH-LFATDAVIVA--HNAPFDMAFLRR---------- 374 Query: 125 AWSWQHDNSRWD--LLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA-- 180 + + WD +LD + L L+ L + I A Sbjct: 375 -HAKASGLA-WDHPILDTVLLSAVL----------FGASVPHTLDALCERLDITIPPALR 422 Query: 181 HDAMADVYAT-IAMAKLVKTRQPRLFDYLFT 210 H A+ D AT A+ +++ Q R F+ L Sbjct: 423 HTALGDAQATACALVQMIPMLQARGFNSLLQ 453 >UniRef50_B1C737 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C737_9FIRM Length = 204 Score = 49.6 bits (117), Expect = 2e-04, Method: Composition-based stats. Identities = 42/175 (24%), Positives = 63/175 (36%), Gaps = 30/175 (17%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEA 74 D ET G +P + + A++ + ++ E F P D + P +TGI Sbjct: 28 DIETTGLNPDENEIIEVGAVKV-RDRKIVDEFSSF-VSPKKDII-SPEIRKLTGIDEAMI 84 Query: 75 RAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW--SWQHDN 132 + E R + +LG+N V FD YD Y + N Sbjct: 85 EGADQIE-DVIPRFNEFI--DGEILLGHN-VNFDINF--------LYDNYERYSDFYLSN 132 Query: 133 SRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 DLL + R L PE N +LE + K GI+ H A++D Sbjct: 133 DYVDLLKISRK---LSPEFEN----------HKLETVLKKLGIKVDQQHRAVSDC 174 >UniRef50_D1N0X4 DNA polymerase III, epsilon subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N0X4_9BACT Length = 268 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 28/119 (23%), Positives = 43/119 (36%), Gaps = 9/119 (7%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 MM + + + + D E+ G P DR + A ++ G + + + Sbjct: 1 MMQNLQLERPLVVFDIESTGVMPQRDRIVEIAVLK----IFPDGHTQNTVRRLNPEMPIP 56 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCIL-GYNNVRFDDEVTRNIFYR 118 PGA I GI+ + F LF + C L GYN FD + F R Sbjct: 57 PGATAIHGISDADVADC----PTFLLIAEKLFRYIEDCDLAGYNITGFDIPMLEAEFKR 111 >UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4 Tax=Paenibacillus RepID=C6CUG6_PAESJ Length = 953 Score = 49.6 bits (117), Expect = 3e-04, Method: Composition-based stats. Identities = 41/185 (22%), Positives = 65/185 (35%), Gaps = 31/185 (16%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI--TG 68 F D ET G + D Q D ++ E + +P + +P A + TG Sbjct: 3 FAVLDLETTGHSVS-DDILQVGLAVLDDNLEIV-ETYSSFVRPTIE-IP---AFITQLTG 56 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 I E + I L + +L +NV FD R Y P+ Sbjct: 57 IDADMVADAPELDEVLMQLIPYL----EDAVLVAHNVNFDAGFLNQALDRCGYHPFI--- 109 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 R D ++++R L P +++L +T+ GI H H A +D Sbjct: 110 ---GRRLDTIELLR---ILYPSI----------TTYQLGAVTELFGIAHDQHHRADSDAI 153 Query: 189 ATIAM 193 AT + Sbjct: 154 ATAEL 158 >UniRef50_Q83GA7 Oligoribonuclease n=2 Tax=Tropheryma whipplei RepID=ORN_TROWT Length = 184 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 24/123 (19%), Positives = 46/123 (37%), Gaps = 12/123 (9%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 M S ++ D E G +P D + A + TD + + E P+ + L Sbjct: 1 MCVAPTPSHLVWVDCEMTGLNPERDELLEVAVVVTDKDLLPLDEGVNVVVSPSSEAL--- 57 Query: 62 GAV--------LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEV-T 112 GA+ ++G+ + + +EA + + V I+ N++ D T Sbjct: 58 GAMDNYVARMHRVSGLLDELSNGVPVSEAQAMVKEYITKHVKTGGIMSGNSIATDRLFIT 117 Query: 113 RNI 115 R + Sbjct: 118 RYM 120 >UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=10 Tax=Bacillus RepID=DING_BACSU Length = 931 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 73/200 (36%), Gaps = 36/200 (18%) Query: 7 QQSTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 + F+ D ET G P D+ Q AA+ ++ I E Y P +P A + Sbjct: 2 NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENG--QITERFSKYINPNK-SIP---AFI 55 Query: 66 --ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 +TGI+ Q + EA + L + +N + FD + ++ + Sbjct: 56 EQLTGISNQMVENEQPFEAVAE-EVFQLL--DGAYFVAHN-IHFDLGFVKYELHKAGF-- 109 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDA 183 D D +++ R I +P G ++L L++ + H H A Sbjct: 110 ----QLPDCEVLDTVELSR---------IVFP----GFEGYKLTELSEELQLRHDQPHRA 152 Query: 184 MADVYAT----IAMAKLVKT 199 +D T + + + ++ Sbjct: 153 DSDAEVTGLIFLEILEKLRQ 172 >UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlamydiales RepID=C4PPS2_CHLTJ Length = 250 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 53/263 (20%), Positives = 86/263 (32%), Gaps = 53/263 (20%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F+ D ET G DR +FAAIR F+ I + F P + I I+ Sbjct: 9 FVCLDCETTGLDVKKDRVIEFAAIR--FTFDEIIDSVEFLIHPERAV--SAESQKIHKIS 64 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYR---NFYDPYAWS 127 R K +RI F I+G++ V FD +V R + + Sbjct: 65 DAMLRDK-PKFGEVFSRIKGFFKERDH-IVGHH-VGFDLQVLSQESERLGETLLPKHHY- 120 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 ++D +R + P+ LE L + + H H AM DV Sbjct: 121 ---------VIDTLRLA-----------KEYGDSPNNSLEALARHFNVPHQGNHRAMKDV 160 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 247 + + K + R R ++ ++ KP+ G ++G Sbjct: 161 EMNVKVFKHLTKR----------FRTLSQVTHIL----SKPIKMKYMPLGKYKGRLFTDI 206 Query: 248 PLAWHPENRNAVIMVDLAGDISP 270 PL + ++ L D Sbjct: 207 PLEY--------LLWALKMDFDQ 221 >UniRef50_A4HVE4 Mitochondrial DNA polymerase I protein B, putative n=3 Tax=Leishmania RepID=A4HVE4_LEIIN Length = 1430 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 43/202 (21%), Positives = 64/202 (31%), Gaps = 26/202 (12%) Query: 3 NDGKQQSTF--LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 ++ T+ +F D ET G +P+ D + A F+ I E F+ Sbjct: 755 QGSQKLKTYRIVFFDIETTGLNPSTDAIVEVAM------FDPI-ENSTFHTLVNPQRSIT 807 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKT--------CILGYNNVRFDDEVT 112 P V I IT A I + K ++G+N D+ + Sbjct: 808 PRTVGIHHITNAMV-RDAPTVDVVAKSIGQYLRLDKASYNPHEILVLVGHNVFSVDEPML 866 Query: 113 RNIFYRNFYDPYAWSWQH--DNSRWDLLDVMR--ACYALRPEGINWPENDDGLPSFRLEH 168 R + P LL+ R + +R + N P D S RL Sbjct: 867 RRAL--ECHAP-ECQLDGILFCDSLALLNAHRSELRWRMRTKRTNQPLMDALASSLRLSR 923 Query: 169 L-TKANGIEHSNAHDAMADVYA 189 L T N + H A D A Sbjct: 924 LITALNVRPEGDLHRADTDTKA 945 >UniRef50_Q7PD30 AGAP012804-PA n=10 Tax=Endopterygota RepID=Q7PD30_ANOGA Length = 228 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 20/79 (25%), Positives = 28/79 (35%), Gaps = 9/79 (11%) Query: 6 KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 ++ D E G DR + A I TDS+ N+I K + + +P AVL Sbjct: 41 TSVQNLVWIDLEMTGLDVEKDRILEIACIVTDSKLNII-------AKGPNIIINEPDAVL 93 Query: 66 I--TGITPQEARAKGENEA 82 G EA Sbjct: 94 AGMNSWCKDHHSKSGLIEA 112 >UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaerococcus RepID=C7RGM9_ANAPD Length = 1365 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 42/205 (20%), Positives = 70/205 (34%), Gaps = 46/205 (22%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL- 65 ++ +F+ D ET G DR + A R + G+ Y + + + P ++ Sbjct: 345 EEESFVVFDLETTGLSRYKDRITEIGACRVEG-----GKITEIYNELVNPEMVIPEKIIE 399 Query: 66 ITGITPQEARAKGENE------AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRN 119 ITGIT + + E F + ++G N FD R +R Sbjct: 400 ITGITNEMVKDCPTIEEVLPGFLDFCK---------DSILVGQNT-DFDVGFVRENCHRM 449 Query: 120 FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSN 179 D + D L + RA ++ + F L+ + + I N Sbjct: 450 GLD-------FNPIYLDTLPMARALFS-------------DMKKFSLDKIARKLEIPAFN 489 Query: 180 AHDAMADVYAT----IAMAKLVKTR 200 H A D AT I M K++ Sbjct: 490 HHRASDDARATAQIFIKMFKMIMEE 514 >UniRef50_A4FXS5 Exonuclease, RNase T and DNA polymerase III n=5 Tax=Methanococcus RepID=A4FXS5_METM5 Length = 191 Score = 49.2 bits (116), Expect = 3e-04, Method: Composition-based stats. Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 9/109 (8%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 ++F D ET G HP + AQ + + TD + N+ +Y D A + G+T Sbjct: 2 YVFLDTETTGLHPG--QIAQLSYLVTDEDLNLKKVFNQYY--LVDHM--SRSAAKVHGLT 55 Query: 71 PQEARAKGENEAAFAARIHSLF-TVPKTCILGYNNVRFDDEVTRNIFYR 118 + + N F + + + + I+G+N + FD + F R Sbjct: 56 -MDILDELSNGMTFEDTVDEVRDDLEDSVIIGHN-ISFDIRFLKAEFER 102 >UniRef50_B7GKX3 Exonuclease n=2 Tax=Bacillaceae RepID=B7GKX3_ANOFW Length = 222 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 45/214 (21%), Positives = 72/214 (33%), Gaps = 35/214 (16%) Query: 11 FLFHDYETFGTHPA-LDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 F D ET G H A +DR + A++ + E Y P D LP P V +T I Sbjct: 29 FTVFDTETTGFHVATVDRLIEIGAVQVKGTAVIEDETFHTYVNPNRD-LP-PVIVELTNI 86 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKT-CILGYNNVRFDDEVTRNIFYR---NFYDPYA 125 T ++ + ++ C +G+ + FD V ++ R F P Sbjct: 87 TEEKV-KHAPTAIEALQQFFQFVEQKQSVCFVGH-YISFDLFVLKHELRREKMKFRKP-- 142 Query: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE----HSNAH 181 DL+ + Y +R LE +A G HS Sbjct: 143 ----TFIDTLDLIGFIAPSYDMRD----------------LERYAQAFGTRMYERHSAIG 182 Query: 182 DAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKH 215 DA+ Y + + + + R R + L + Sbjct: 183 DALTTAYLFVELLQQFRLRGYRTWGELLRATDSQ 216 >UniRef50_Q68BL2 DNA helicase RecG n=2 Tax=cellular organisms RepID=Q68BL2_NANBA Length = 1341 Score = 49.2 bits (116), Expect = 4e-04, Method: Composition-based stats. Identities = 52/227 (22%), Positives = 74/227 (32%), Gaps = 59/227 (25%) Query: 14 HDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQE 73 D ET G D P + AA E + G + AD A +TGIT + Sbjct: 139 FDLETTGLSKEKDHPVEIAA-----EAPLSGRTFSTLIRLADGMSISTKAEEVTGITTAQ 193 Query: 74 ARAKGENE-----AAFAARIHSLF--TVPK--TCILGYNNVRFDDEVTRNIFYRNFYDPY 124 + A+F I + P ++G+N RFD + Sbjct: 194 CKDPSLPTFPQAYASFLRFIEAEMEDAAPGAFPLLVGHNIERFDLPLL------------ 241 Query: 125 AWSWQHDNSRWD--------LLDVMRACYAL-----RPEGINWPENDDGLPSFRLEHLTK 171 H R+D +LD + A +L +PE N + HLT+ Sbjct: 242 ----LHCAKRFDVAAPLSARILDTLSASRSLLTGSAKPEAFNL--------TTLYGHLTR 289 Query: 172 ANGIEHSNAHDAMADVYATIAMAKLVKTRQ-----PRLFDYLFTHRN 213 I AH A ADV T+A+ + P F F R Sbjct: 290 KEAIA---AHRASADVKMTVAVLHALLEHSAGMSGPDGFAKFFNRRT 333 >UniRef50_C4FTI9 Putative uncharacterized protein n=1 Tax=Catonella morbi ATCC 51271 RepID=C4FTI9_9FIRM Length = 828 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 67/193 (34%), Gaps = 33/193 (17%) Query: 15 DYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQE 73 D ET G+H D+ Q A+ + V+ + + L P + T IT Sbjct: 12 DLETTGSHLDQGDQIIQIGAVLI-EDGQVLAQHSM---------LLNPERNIPTHITAIT 61 Query: 74 ARAKGENE--AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHD 131 + + F+ + K C +N+ FD + F D +Q Sbjct: 62 GIQSDQVQDAPTFSQVAGLWYERLKDCFFVAHNLGFDLTFLQAKFAEQGLD-----FQPP 116 Query: 132 NSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATI 191 LD ++ P+ P F L+ L++ G+ +AHDA+ D T Sbjct: 117 -----ALDTVQLAKIFLPQA----------PGFNLQDLSQFFGLNFQDAHDALGDARMTA 161 Query: 192 AMAKLVKTRQPRL 204 + ++ + L Sbjct: 162 HLLDVLAHQAADL 174 >UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae RepID=Q8EQD9_OCEIH Length = 939 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 38/195 (19%), Positives = 69/195 (35%), Gaps = 28/195 (14%) Query: 11 FLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 F+ D ET G P+ D+ + + + + +I F+ P +TGI Sbjct: 4 FVVIDLETTGHAPSKNDKIIEIGMVIIEGD-EIIDTKTTFF---NPGQPIPPFITNLTGI 59 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 + + A A I S+ + I+ +N V FD N D Sbjct: 60 SDDDV-ADAPLFTEKALSIKSILE--DSYIIAHN-VNFDLGFLNAELKENGIDRLHNQ-- 113 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 +LD + L P P ++L L+ ++H + H A++D Y Sbjct: 114 -------VLDTVELSRILFPTA----------PGYKLSQLSDHFNLQHDDPHRALSDAYV 156 Query: 190 TIAMAKLVKTRQPRL 204 T + + + + +L Sbjct: 157 TAKLFQKLMDKINQL 171 >UniRef50_Q14JL3 Oligoribonuclease n=21 Tax=Gammaproteobacteria RepID=ORN_FRAT1 Length = 178 Score = 48.8 bits (115), Expect = 4e-04, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 59/197 (29%), Gaps = 24/197 (12%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 + ++ D E G + + AAI TD + N+I E E D+ L Sbjct: 1 MQSADNLIWIDLEMTGLDVDSCKITEIAAIITDKDLNIIAEAEPIAIYQPDEVLAN---- 56 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 + + G + ++I + + E R + PY Sbjct: 57 -MNEWCIKTHTETGLTQRVKDSKISTEAAEQQIL-----------EFIRK------FVPY 98 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHL-TKANGIEHSNAHDA 183 S NS W + A Y + D L E N H A Sbjct: 99 QSSPLCGNSIWQDRRFL-AKYMPNIDEYCHYRMLDVTTLKLLNQYWGDGKSFEKKNTHKA 157 Query: 184 MADVYATIAMAKLVKTR 200 + D+ +IA K + + Sbjct: 158 LDDIRESIAELKFYRQK 174 >UniRef50_C2D7T6 3'-5' exonuclease and CRISPR-associated Cas2 family protein n=1 Tax=Atopobium vaginae DSM 15829 RepID=C2D7T6_9ACTN Length = 337 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 42/195 (21%), Positives = 67/195 (34%), Gaps = 30/195 (15%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFY-CKPADDYL-PQPGAV 64 F+ D ET G + D+ + AIR + + Y C D L P Sbjct: 166 SDKKFVILDIETSGLNETDDKIIEIGAIR------ICDKQVDDYQCLIKRDSLNLSPAIT 219 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 +TG+T E +G N + +LGYN + FD N R+ + Sbjct: 220 QLTGLTDIELANRGVNPNLALNGLKQFIG--HLPVLGYN-IAFDMRFINNEL-RSMNEEL 275 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 DN D++ ++ L S+ L+++ K GI + H A+ Sbjct: 276 L-----DNREIDVMRFIKKEKMF-------------LESYALDNVLKVYGISATVPHRAL 317 Query: 185 ADVYATIAMAKLVKT 199 D +A V Sbjct: 318 GDAKLIAKLALKVNK 332 >UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJC1_MOOTA Length = 921 Score = 48.8 bits (115), Expect = 5e-04, Method: Composition-based stats. Identities = 45/205 (21%), Positives = 74/205 (36%), Gaps = 40/205 (19%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV-LI 66 T++ D ET G PA DR + AA+R + N+ + + P P A+ + Sbjct: 3 PQTYVVLDVETTGLDPARDRIIEIAAVRLEGG-NITRQFQTL---VNPGR-PIPPAIERL 57 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 TGI+ + + LF +G+N FD ++ P Sbjct: 58 TGISDAMV-REAPPLPEVLPGLLDLFR--DAIPVGHNG-TFDLAFLNQALGHGWHSP--- 110 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 LLD + L P L S RL++++K +E + H A+ D Sbjct: 111 ----------LLDTLALSRILFP----------CLASHRLDYMSKYLTLEATGHHRALDD 150 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTH 211 V T A+L++ L+ Sbjct: 151 VLTT---ARLLEN----LWQATLEL 168 >UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RRP7_FIBSS Length = 905 Score = 48.4 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 40/209 (19%), Positives = 72/209 (34%), Gaps = 40/209 (19%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTD-----SEFNVIGEPEVFYCKPADDYLPQPGA 63 F+ D ET G D + A +R + + + +P +P + L Sbjct: 5 PAFVALDLETTGLDFEKDEIIEVALVRFENGEPKENLDFLVKPSAVELRPFIETL----- 59 Query: 64 VLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 TGI+ + + + FA + + + +N FD + + F + Sbjct: 60 ---TGISKADLE----SASDFATIAGQICSFVGDLPIVAHNAVFDSKFLKQTFTKVGISY 112 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDA 183 + + WD L + R + P RL+ L + IE S AH A Sbjct: 113 DSHVF------WDSLTLSRIAFQDVPN-------------HRLDTLVQELNIERSRAHRA 153 Query: 184 MADVYAT----IAMAKLVKTRQPRLFDYL 208 + D A + + + T P ++D L Sbjct: 154 LPDADACGRLFVKALEKISTMDPWIYDAL 182 >UniRef50_Q2S3Z9 Exonuclease, putative n=1 Tax=Salinibacter ruber DSM 13855 RepID=Q2S3Z9_SALRD Length = 249 Score = 48.4 bits (114), Expect = 5e-04, Method: Composition-based stats. Identities = 46/182 (25%), Positives = 68/182 (37%), Gaps = 28/182 (15%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIR--TDSEFNVIGEPEVFYCKPADDYLPQPGAVL-IT 67 +F D E GT P R Q R + + E P ++ P AV +T Sbjct: 8 LVFFDLEATGTDPQAARIIQIGMQRFVPSGDGAALDETIDVLVDPQEEI---PAAVTDLT 64 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 G++P +A + A RI L GYN + +D + + F R + + Sbjct: 65 GLSP-DAVRQAPPLGAHLDRIAPLLADADLA--GYNALAYDIPLLQAEFER-----HGRT 116 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 + R +LD R LRP + S E T G +AHDA++DV Sbjct: 117 LPGPDDRV-VLDPYRLEQVLRPRTL----------SALYERYT---GDALDDAHDALSDV 162 Query: 188 YA 189 A Sbjct: 163 EA 164 >UniRef50_A9DMS8 DNA polymerase III, epsilon subunit n=1 Tax=Kordia algicida OT-1 RepID=A9DMS8_9FLAO Length = 457 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 83/250 (33%), Gaps = 42/250 (16%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 + T+ D ET G + + F + D E ++ E + L Sbjct: 1 MAKNPTYTIIDVETTGRSNKITEISIF---KFDGE-TIVDEFTSL---VNPNVLIPTHIT 53 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 +TGI A A A + S+ + + +N V FD V RN F Sbjct: 54 ALTGIDNAMV-ADAPTFAEIAKEVLSI--TKDSIFVAHN-VNFDYNVIRNEF-------- 101 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 + R L +R AL P G S+ L L K+ I S+ H A Sbjct: 102 --KAIDLDFRRKKLCTVRLSRALIP----------GFKSYSLGKLCKSLNIHISDRHRAR 149 Query: 185 ADVYATIAMAKLV--KTRQPRLFDYLFTHRNKHKLM------ALIDVPQMKPLVHVSGMF 236 D AT+ + +L+ K F +K + + D KP ++ F Sbjct: 150 GDAAATVILFQLLLTKDAAAETFQKFLKRESKEATLPPHLPSKIFDDLPAKPGIY---YF 206 Query: 237 GAWRGNTSWV 246 +G +V Sbjct: 207 KDKKGKIIYV 216 >UniRef50_Q31HZ4 Oligoribonuclease n=12 Tax=Gammaproteobacteria RepID=ORN_THICR Length = 184 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 17/64 (26%), Positives = 27/64 (42%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 K ++ ++ D E G D+ + A + TD+E NV+ E V + YL A Sbjct: 1 MKSENNLIWIDLEMTGLDHKADQIIEIATVVTDAELNVLAEGPVMAIQTEQHYLDGMDAW 60 Query: 65 LITG 68 T Sbjct: 61 CTTH 64 >UniRef50_D2BLE9 ATP-dependent DNA helicase/DNA polymerase III, epsilon subunit n=4 Tax=Lactococcus lactis RepID=D2BLE9_LACLK Length = 794 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 44/227 (19%), Positives = 85/227 (37%), Gaps = 43/227 (18%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEA 74 D E H + ++ Q + + I E P + LP+ + TG++ ++ Sbjct: 11 DLEATDAHSSENKIIQIGIVLVEDG--EIVETFSTEVNPHEPLLPRISEL--TGLSDKQL 66 Query: 75 RAKGENEA-AFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNS 133 + E A ++ L T + + +N RFD Y + + N Sbjct: 67 KT--APEFSEVAGKVRELLT--DSVFVAHNA-RFD--------YGLLEKSFLNAGLEFNE 113 Query: 134 --RWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATI 191 R D +D+ R Y P + + LE L++ + H + H A++D YAT Sbjct: 114 MLRVDTVDLARVFY---------PTFEK----YGLESLSEKLDLAHDHPHAAVSDAYATA 160 Query: 192 AMAKLVKTRQPRL----FDYLFTHRN------KHKLMALIDVPQMKP 228 + ++ + +L + L H + K L +D +++P Sbjct: 161 ELLLKIEAKIQKLPRSVLEELLRHSDNLLFESKTFLQEQLDKTKIRP 207 >UniRef50_A3XHM4 DNA polymerase III, epsilon subunit n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XHM4_9FLAO Length = 221 Score = 48.4 bits (114), Expect = 6e-04, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 58/184 (31%), Gaps = 19/184 (10%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 +++ F+ D ET GT+ DR A+ + Y K + AV I Sbjct: 32 EEARFVVFDTETTGTNAREDRMLSIGALELKGNKISLSSSFELYVK---QEVFNEEAVAI 88 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 GI + + K +E ++G++ V FD + R Sbjct: 89 HGILRENRKYKKVSEEEAVKAFLEFIG--DAILVGHH-VGFDIGIINYALKRLGAPKLKN 145 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 + L ++ D + L+ L + I ++ H AM D Sbjct: 146 KFTD-------------TGVLYKRTVHLVNITDPNKVYTLDDLCEELNIAKTDRHKAMGD 192 Query: 187 VYAT 190 Y T Sbjct: 193 AYIT 196 >UniRef50_B0KHB9 Exonuclease RNase T and DNA polymerase III n=3 Tax=root RepID=B0KHB9_PSEPG Length = 203 Score = 48.1 bits (113), Expect = 6e-04, Method: Composition-based stats. Identities = 28/113 (24%), Positives = 40/113 (35%), Gaps = 12/113 (10%) Query: 14 HDYETFG--------THPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 D ET G HP A+ E ++ E +P +P AV Sbjct: 8 FDTETTGFPNFKAPSDHPDQPHIVDICALLYTPEGELVDSFEAM-VRPDGWSIPNEVAV- 65 Query: 66 ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYR 118 I GIT + A G EA +++ + +NV FDD + R R Sbjct: 66 IHGITNELALEHGIPEALAIEGFLNIWNQAGLRVA--HNVSFDDRIMRIALKR 116 >UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicutes RepID=Q67P96_SYMTH Length = 1475 Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 50/221 (22%), Positives = 85/221 (38%), Gaps = 35/221 (15%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F+ D ET G P D + A+R ++ + F +P +P P +T IT Sbjct: 454 FVVLDIETTGFSPIGDDIIELGAVRCRGG-EIVDSFQSF-VRPTK-PVP-PEVQKLTNIT 509 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA-WSWQ 129 P +G EA A + + F I+ +N +FD R Y + Sbjct: 510 PDML--EGAPEA--AEALRAFFQFVGDAIVVAHNAQFDYSFLRYH-----RQKYLGEEFA 560 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY- 188 + +LD + A+ P + S L LTK + + H A AD Sbjct: 561 NP-----VLDTLTLARAVLPH----------MRSHSLAALTKELQVPLVDHHRADADAKT 605 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPL 229 A + + KL++ + + T + ++L I+V Q++P Sbjct: 606 AAMVLMKLLERA-----EGVETVADLNRLTKGINVEQLRPY 641 >UniRef50_C1YUT4 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YUT4_NOCDA Length = 595 Score = 48.1 bits (113), Expect = 7e-04, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 67/192 (34%), Gaps = 24/192 (12%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV-LITG 68 +F+ D ET GT + R + A+R GE + + P P + L+TG Sbjct: 25 SFVVLDLETTGTSASGSRITEVGAVRVRG-----GEVVGEFATLVNPGTPIPANITLLTG 79 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 IT + E + L P T ++ +N FD + R+ D W Sbjct: 80 ITQSMVASAPPMEEVLPRLLAFLDAEPDTVLVAHNA-PFDTGFLKAACERHGTD-----W 133 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 D L + RA A + RL L G+ + H A+ D Sbjct: 134 -PGYPVVDTLRLARAVLAR-----------GETRNHRLATLAAYFGVPVAPNHRALEDAR 181 Query: 189 ATIAMAKLVKTR 200 AT+ + + R Sbjct: 182 ATVGVLHGLVER 193 >UniRef50_Q5SK39 DNA polymerase III epsilon chain-like protein n=2 Tax=Thermus thermophilus RepID=Q5SK39_THET8 Length = 624 Score = 48.1 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 48/216 (22%), Positives = 71/216 (32%), Gaps = 39/216 (18%) Query: 14 HDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQE 73 D ET G P D A + + EVF P A + G+T + Sbjct: 443 FDLETTGLDPEQDAVVALAGVHVLG--RRVLRQEVFEALVNPGRPISPAATAVHGLTAEM 500 Query: 74 ARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNS 133 R K EA A F T ++ +N FD R Sbjct: 501 LRDKPPLEAVLPA--FRAFVQ-DTVLVAHNG-AFDLAFLRRA------------------ 538 Query: 134 RWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAM 193 LD L + +P+ D +RLE L G+ + H A+ D T Sbjct: 539 ---GLDQPPLLDTLLLAQLLFPDLKD----YRLEALAHRFGVPATGRHTALGDALMT--- 588 Query: 194 AKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPL 229 A++ QP LF+ R +L +++ + PL Sbjct: 589 AEVFVRMQPLLFE-----RGLKRLWDVVEACRRLPL 619 >UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepID=Q2W728_MAGSA Length = 412 Score = 48.1 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 44/207 (21%), Positives = 64/207 (30%), Gaps = 51/207 (24%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPAL-DRPAQFAAIR-------TDSEFNVIGEPEVFYCK 52 M + TF+ D ET G HP+ D+ A +R + FN I P + Sbjct: 209 MGAQPLKSLTFVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNPG----R 264 Query: 53 PADDYLPQPGAVLITGITPQEARAK---GENEAAFAARIHSLFTVPKTCILGYNNVRFDD 109 P ++ GIT K G F + + V N FD Sbjct: 265 PIP-----AESIRYHGITDDMVVDKPPAGVVLPQFRSYVADAVLVAH-------NAAFDL 312 Query: 110 EVTRNIFYRNFYDPYAWSWQHDNSRWDL--LDVMRACYALRPEGINWPENDDGLPSFRLE 167 + R R+D+ LD M L D L+ Sbjct: 313 KFLR-----------MREKDMG-IRFDIPVLDTMILSNFL----------DGPDAGHSLD 350 Query: 168 HLTKANGIEHSNAHDAMADVYATIAMA 194 + GIE ++ H A+ D T A+ Sbjct: 351 DICDRYGIEITDRHTALGDAMVTAAVL 377 >UniRef50_A9HX18 Putative exonuclease n=1 Tax=Bordetella petrii DSM 12804 RepID=A9HX18_BORPD Length = 177 Score = 48.1 bits (113), Expect = 8e-04, Method: Composition-based stats. Identities = 42/187 (22%), Positives = 67/187 (35%), Gaps = 29/187 (15%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEP-EVFYCKPADDYLPQPGAVLITGITPQE 73 D ET G A +FAA+ + + E +V + +P P +TGIT E Sbjct: 12 DLETTGLSTASCEILEFAAVHVGPDGAIEREFSQVVRTR---GTVP-PFITRLTGITQAE 67 Query: 74 ARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNS 133 G A + + + ++N FD + N+ Sbjct: 68 VDGHGIPVAEAFSAFLAFLAD---APVFFHNASFDCRFLQAAAEHTGLP-------FANA 117 Query: 134 RWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAM 193 L + R WPE LPS +L+ L + G H A+ADV +T+A+ Sbjct: 118 THCTLQLARQA---------WPE----LPSHKLQVLARHVGAADPT-HRALADVRSTVAV 163 Query: 194 AKLVKTR 200 A + + Sbjct: 164 ALAARRK 170 >UniRef50_Q2KXB5 Putative exonuclease n=4 Tax=Bordetella RepID=Q2KXB5_BORA1 Length = 193 Score = 47.7 bits (112), Expect = 9e-04, Method: Composition-based stats. Identities = 43/178 (24%), Positives = 58/178 (32%), Gaps = 27/178 (15%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 S F+ D ET G +FAA+R D+E + E + +P A L TG Sbjct: 26 SAFVVADLETTGLSAHACEILEFAAVRVDTEGQIASEYSQL-VRIN-GRVPSFIARL-TG 82 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 I+ QE G+ T + ++N FD R R Sbjct: 83 ISQQEVIRDGKPIDEAFRAFCDFV---GTAPVFFHNASFDTRFLRATASR-------CGQ 132 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 DN L + R WPE EHL A + H A+AD Sbjct: 133 AFDNDTHCTLLLARRA---------WPELRSHKLGMLAEHLGAA-----TPTHRALAD 176 >UniRef50_B7V8D9 Probable nuclease n=6 Tax=Pseudomonas aeruginosa RepID=B7V8D9_PSEA8 Length = 208 Score = 47.7 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 73/208 (35%), Gaps = 29/208 (13%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 M++ + + D ET P A+ V+GE Y +P Sbjct: 23 MHEAVEAEEVISLDLETTSLDPRRADILSIGAVLVRRGKLVMGERLELYVEPPPSL--DA 80 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFD----DEVTRNIFY 117 ++ I + + + + E A + + P +LGY + FD + R + Sbjct: 81 ESIRIHKLRRADLEGQLQLEQALRQVLAFIGDRP---LLGY-YLSFDVAVLNRHLRQLLD 136 Query: 118 RNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEH 177 R ++P +++ + R ++P D R + L +A + Sbjct: 137 RQLHNP-------------SIEISSLYH--RKVSRHFP---DAHIDLRFDTLARALDVPV 178 Query: 178 SNAHDAMADVYAT-IAMAKLVKTRQPRL 204 S H A+ D A + +L+K P++ Sbjct: 179 SGRHTALGDAQAVALMFMRLLKGPAPKV 206 >UniRef50_C7Q2F7 Exonuclease RNase T and DNA polymerase III n=1 Tax=Catenulispora acidiphila DSM 44928 RepID=C7Q2F7_CATAD Length = 204 Score = 47.7 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 40/187 (21%), Positives = 65/187 (34%), Gaps = 30/187 (16%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEA 74 D ET G P + + A + D+ V G + +P GA + GIT + Sbjct: 16 DVETSGFQPPIAEILEVAIVHVDATGQVTGSWDSLL-RPQGGV----GATRVHGITREMV 70 Query: 75 RAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYR-NFYDPYAWSWQHDNS 133 E +H L ++ +N + FD + F R + P Sbjct: 71 EPAPRFEDVGM-ELHGLLV--DRVVVAHN-LAFDAKFLVTQFARLGVHSP---EIAGGAC 123 Query: 134 RWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAM 193 +R A+ P PS++L +A G+E ++AH A+ D AT + Sbjct: 124 ------TLRTSQAMLPG-----------PSYKLLDCCEAVGVELTDAHSALGDALATARL 166 Query: 194 AKLVKTR 200 R Sbjct: 167 LGFFLQR 173 >UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R0M5_PHYMT Length = 1449 Score = 47.7 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 41/183 (22%), Positives = 70/183 (38%), Gaps = 30/183 (16%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 T++ D+ET G D+ + AAI+ + +I E + P + P + T I Sbjct: 408 TYVIFDFETTGLSKINDQIIEIAAIKIQNN-QIIDEFQTL-INPQQELTPFIENL--TNI 463 Query: 70 TPQEARAKGENEAAFAARIHSLFTV--PKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 + Q+ + + A I F + ++ +N + FD N ++ + Sbjct: 464 SNQDLKNQPL-----IATILPKFLKFCENSILIAHN-ISFDMGFLVNQTKKHL------N 511 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 + + D L++ R C D L F L+ L K I N H AM+DV Sbjct: 512 LKLNLPFIDTLNLARYCL------------DSNLRYFNLKSLAKYFKISFENHHRAMSDV 559 Query: 188 YAT 190 T Sbjct: 560 LIT 562 >UniRef50_D1XX28 UvrD/REP helicase n=3 Tax=Prevotella RepID=D1XX28_9BACT Length = 894 Score = 47.7 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 85/248 (34%), Gaps = 43/248 (17%) Query: 4 DGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL----- 58 + Q + D ET G D + +AI+ ++GEP Y L Sbjct: 505 NAFHQQEIVVFDTETTGLDVFTDDIIEISAIKIKEG-KIVGEPLDLYIYTDKPILQKLGT 563 Query: 59 -PQPGAVLITG-ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIF 116 P + + E + F + + ++G+N + +D + N Sbjct: 564 KENPLYEIYHKKLASGELLKANDALNKFIEFV------DNSTLIGHN-INYDYHILDNCL 616 Query: 117 YRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE 176 R YA ++S + D ++ L P L S++LE+L + +E Sbjct: 617 KR-----YANDCMDNHS-YKYFDSLKLIRLLEPS----------LRSYKLEYLLERFQLE 660 Query: 177 HSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMF 236 N+H ++ DV ATI++ + + + +D K + V+ Sbjct: 661 GINSHQSIDDVKATISLINYCADKAQLV------------VEKQMDFLNHKQVFKVANKL 708 Query: 237 GAWRGNTS 244 A+ G Sbjct: 709 RAYYGEIY 716 >UniRef50_C4LJX7 Putative oligoribonuclease n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LJX7_CORK4 Length = 222 Score = 47.7 bits (112), Expect = 0.001, Method: Composition-based stats. Identities = 36/189 (19%), Positives = 62/189 (32%), Gaps = 36/189 (19%) Query: 12 LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI----- 66 ++ D E G P+ + AAI TD+ N++ E DD L + + Sbjct: 26 VWIDCEMTGLDPSTHVLVEIAAIVTDANLNILDEGLDIVIHATDDELAKMDDFVTQMHTK 85 Query: 67 TGITPQ---EARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 G+T + + GE E + P+T L N++ D + Y D Sbjct: 86 NGLTDEIRKSTVSVGEAENEVLDYVKKWVNAPRTAPLAGNSIASDRKFI--AAYMPKLDE 143 Query: 124 YAWSWQHDNSRW-DLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHD 182 + R D+ + + P+ N + AH Sbjct: 144 FLH------YRMIDVSSIKELAHRWYPKVYQ-------------------NQPKKGLAHR 178 Query: 183 AMADVYATI 191 A+AD+ +I Sbjct: 179 ALADIKESI 187 >UniRef50_UPI0001AEDE41 DNA polymerase III n=2 Tax=Streptomyces RepID=UPI0001AEDE41 Length = 641 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 39/190 (20%), Positives = 58/190 (30%), Gaps = 28/190 (14%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEA 74 D ET G DR A I + GE P P V + G+T + Sbjct: 24 DVETSGLVARRDRVLSVAVITIGPDGEQTGEFSTL---LDPGCDPGP--VEVHGLTAERL 78 Query: 75 RAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSR 134 +G A + + +N +FD + + F R A W + R Sbjct: 79 --RGAPTFDQVAGRIGAMLQDRVLVA--HNAQFDYDFLAHEFAR------ARMWLPVSQR 128 Query: 135 WDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMA 194 L + R P P +D +L L + AHDA+ D + Sbjct: 129 LCTLALNRQV---DP-----PTDD-----MKLGTLATHYDVPQQRAHDALDDTRVLAGIL 175 Query: 195 KLVKTRQPRL 204 + RL Sbjct: 176 RASLREAARL 185 >UniRef50_Q04F80 DNA polymerase III, alpha subunit (Gram-positive type) n=5 Tax=Leuconostocaceae RepID=Q04F80_OENOB Length = 1437 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 7/106 (6%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 + D ET G D+ Q +A++ + V+ + F + + +TGIT Sbjct: 410 YTIFDIETTGLSAVNDKIIQLSAVKMKNGV-VLDTFDQF---INPGFPLSEQTINLTGIT 465 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIF 116 + + EA + T + G+N ++FD + Sbjct: 466 -DDLVKNSKPEAEVLKMFQQFYAR--TILAGHNVIKFDYGFVNHAL 508 >UniRef50_C5WML0 Putative uncharacterized protein Sb01g037840 n=1 Tax=Sorghum bicolor RepID=C5WML0_SORBI Length = 583 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 45/228 (19%), Positives = 72/228 (31%), Gaps = 42/228 (18%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL-- 65 +T L D ET G DR +FA +R +++G + L P + Sbjct: 380 PATILVFDIETTGFSRREDRIIEFA-VR-----DLMGGKNSTF-----QTLINPEKEVRN 428 Query: 66 --ITGITPQEARAK-----GENEAAFAARIH-SLFTVPKTCILGYNNVRFDDEVTRNIFY 117 + GI+ GE + + +N FD F Sbjct: 429 AYVHGISNSMLCRPDVPRFGELVPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLIFEFR 488 Query: 118 R-NFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE 176 R P W + D L + R + +G L S L++L + I Sbjct: 489 RCKLEMPGDWLF------VDTLPIAR--QLVDSDG-------SKLSSVSLKNLRERYNIP 533 Query: 177 -HSNAHDAMADVYATIAMAKL----VKTRQPRLFDYLFTHRNKHKLMA 219 +AH AM DV + + +K P+L + F + A Sbjct: 534 LTGSAHRAMQDVTTLCYVLQKLTFELKLTVPQLLEKSFQASDLPATRA 581 >UniRef50_C2BLZ4 DNA polymerase III subunit epsilon n=6 Tax=Corynebacterium RepID=C2BLZ4_9CORY Length = 221 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 16/49 (32%), Positives = 20/49 (40%), Gaps = 3/49 (6%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADD 56 + F D ET G + DR + AA+R DS FN I D Sbjct: 18 EPVFAVIDTETTGFNKRYDRIIELAAVRADSHFNPIDSWHTL---LNPD 63 >UniRef50_C7LWI5 DNA polymerase III, epsilon subunit n=2 Tax=Deltaproteobacteria RepID=C7LWI5_DESBD Length = 244 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 47/202 (23%), Positives = 70/202 (34%), Gaps = 22/202 (10%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG-AVLITGITPQE 73 D E G + A+R V GE +P+ +P P + LI ITP+ Sbjct: 50 DTELTGLSARREEIVSIGAVRVRGLAIVPGESFSVLVRPS---IPLPKTSTLIHRITPE- 105 Query: 74 ARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNS 133 A A+ A + T I+G++ V D +N P A + Sbjct: 106 AIAQAPPLAEVLPELIEF--CKGTLIVGHH-VGLDMSFLNRACRKNHGQPLA----NPC- 157 Query: 134 RWDLLDVMRACYALRPEGINW-PENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT-- 190 LD MR R + E + S+ L L + AH+A+ D T Sbjct: 158 ----LDTMRMAMLWREKRTPSHYEQFNLSISYVLTDLAHEFDLPRFTAHEALGDALQTAY 213 Query: 191 --IAMAKLVKTRQPRLFDYLFT 210 I +AK + +P LF Sbjct: 214 LFIYLAKKIAGNRPLTLRELFR 235 >UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus coagulans 36D1 RepID=C1PF24_BACCO Length = 930 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 36/185 (19%), Positives = 63/185 (34%), Gaps = 28/185 (15%) Query: 11 FLFHDYETFGTH-PALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 ++ D ET G DR QF+A+ + I + P + +P P +TGI Sbjct: 4 YVVVDLETTGNSAKKGDRIIQFSAVVVEG--REIKTQFTSFVNP-EKPVP-PFISELTGI 59 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 + + A RI + + + +N + FD + + P+ Sbjct: 60 DNGMLE-EAPVFSEIAPRIMEILE--DSIFVAHNVL-FDLPFLQQELKAAGFPPF----- 110 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 R LD + P L S++L L + + H H A +D + Sbjct: 111 ----RGPSLDTVEFSRIAFPT----------LNSYKLGDLADSLSLYHERPHRADSDAFV 156 Query: 190 TIAMA 194 T + Sbjct: 157 TAKLL 161 >UniRef50_Q8EUK5 DNA polymerase III subunit alpha n=1 Tax=Mycoplasma penetrans RepID=Q8EUK5_MYCPE Length = 1458 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 22/116 (18%), Positives = 40/116 (34%), Gaps = 7/116 (6%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 +T++ D ET G P D+ +F AI+ V E + P + I Sbjct: 417 SDATYVIFDIETTGLSPYYDKIIEFGAIKYHKGVQV--ESIQMFINPEEKI--SDKIFAI 472 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 T I+ ++ +I + ++ +N ++FD N D Sbjct: 473 TKISNEDV-KDALKIKEALVKIKDFIG--DSVLIAHNGIKFDLPFLNCKLEENKMD 525 >UniRef50_B0UN90 Exonuclease RNase T and DNA polymerase III n=3 Tax=Rhizobiales RepID=B0UN90_METS4 Length = 223 Score = 47.3 bits (111), Expect = 0.001, Method: Composition-based stats. Identities = 39/177 (22%), Positives = 56/177 (31%), Gaps = 21/177 (11%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEA 74 D ET G P D AAIR + I E D P A+ + + E Sbjct: 35 DCETTGLDPRRDEIVAVAAIRIRGD--RILTSESLRATVRSDRPSSPEAIKVHRLLNAEI 92 Query: 75 RAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSR 134 R +A A + + P I+GY FD + R F + N R Sbjct: 93 REAEPLDAVLPALLRFIGGRP---IVGYYT-EFDVRMLDKSVRRQF------GIRLPNPR 142 Query: 135 WDLLDVMRAC-YALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190 D+ + A Y P+ + + + G+ HDA D T Sbjct: 143 IDVSSLYHAAKYRDAPDYV--------KIDLSFARILEDLGLPALPQHDAFNDALMT 191 >UniRef50_UPI00015B53D6 PREDICTED: similar to ENSANGP00000010833 n=1 Tax=Nasonia vitripennis RepID=UPI00015B53D6 Length = 185 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 18/125 (14%), Positives = 42/125 (33%), Gaps = 21/125 (16%) Query: 12 LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITP 71 ++ D E G + D+ + A+I TD + N++ + ++D ++ Sbjct: 13 IWIDLEMTGLNVMQDKILEVASIITDDQLNIVSDEFQMVIHQSEDVF---ETMI--PWCQ 67 Query: 72 QEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHD 131 ++ G EA+ + + ++E+ R F+R + Sbjct: 68 EQHNKTGLIEASRNSIFNEEMA--------------EEELIR--FFRKYVPHNTCPLAGS 111 Query: 132 NSRWD 136 D Sbjct: 112 CLYMD 116 >UniRef50_A4U2R7 DNA polymerase III, epsilon subunit n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U2R7_9PROT Length = 459 Score = 46.9 bits (110), Expect = 0.001, Method: Composition-based stats. Identities = 34/184 (18%), Positives = 55/184 (29%), Gaps = 26/184 (14%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEA 74 D ET G A D A+R I + A I GI Sbjct: 261 DTETTGLDAARDAIVSVGAVRCHGS--RIYRAAMLDLLVNPGRRIPARATAIHGIDESMV 318 Query: 75 RAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSR 134 K AA + + + ++ + + FD + R+ R D W Sbjct: 319 AGK----PDLAASLPEIAAIMDKAVVVGHQIGFDLALLRHGTERLGLD-----WTPPPR- 368 Query: 135 WDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAM- 193 LD++ AL P+ ++ G+ S H A+ D T + Sbjct: 369 ---LDILLLSAALAPDE----------SGHEIDDQAARMGVNISGRHTALGDALVTAELW 415 Query: 194 AKLV 197 +L+ Sbjct: 416 VRLI 419 >UniRef50_UPI000186E428 oligoribonuclease, putative n=1 Tax=Pediculus humanus corporis RepID=UPI000186E428 Length = 196 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 20/99 (20%), Positives = 33/99 (33%), Gaps = 3/99 (3%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ-PGAVLITGI 69 +++ D E G +P D + A I T+ + N + E F D+ L L+ Sbjct: 23 YIWIDLEMTGLNPETDTILEVACIITEPDLNPLNEGMHFVIHQNDNVLKSMNEWCLVHHE 82 Query: 70 TPQEARAKGENEAAFAARIHSLFT--VPKTCILGYNNVR 106 + + LF T I G N + Sbjct: 83 KSGLISESRASPHSLKDVEEKLFNYIKSNTFIDGTNYLA 121 >UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4KA24_THASP Length = 769 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 64/193 (33%), Gaps = 34/193 (17%) Query: 10 TFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFN-VIGEPEVFYCKPADDYLPQPGAVLIT 67 ++ D ET G +P+ D Q A R N + E F + P + I Sbjct: 578 SYTVFDTETTGLNPSQGDEIIQVGATRI---LNGKLLRAESFEQLVDPERPLAPESAKIH 634 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 GIT + +G+ F T ++ +N FD + Sbjct: 635 GITSEML--RGQPTIDKVLPAFHAFAA-DTVLIAHNA-AFDMRFLQ-----------LKE 679 Query: 128 WQHDNSRWD--LLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMA 185 Q R+D ++D + + P S RLE + + G+ H A+ Sbjct: 680 EQTG-LRFDHPVIDTLLLSAVVHPN----------QESHRLEAIAERLGLTIVGRHTALG 728 Query: 186 DVYATIAM-AKLV 197 D T + KL+ Sbjct: 729 DAIVTAEVFLKLI 741 >UniRef50_D1BPK1 UvrD/REP helicase n=3 Tax=Veillonella RepID=D1BPK1_VEIPT Length = 862 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 51/189 (26%), Positives = 77/189 (40%), Gaps = 27/189 (14%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 +Q + +D E+ GT A DR Q AAIR D + V+ E F +P + + Sbjct: 490 EQHEVVVYDVESTGTDTAQDRIIQIAAIRIDEDGQVLETFERF---INPG-VPVGQSEEV 545 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYR-NFYDPYA 125 G + + GE E A + F+ I+G+N V +D + N R N +P Sbjct: 546 HGFSDAYLQEHGE-EPAIVLQAFKEFSK-NAIIVGHN-VNYDVTIFTNELARHNLGNP-- 600 Query: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMA 185 + +D LD+ R Y P LP+ +L L I H H+AM Sbjct: 601 ----EFKAIYDTLDIYRRFY---PN----------LPNHKLGFLASKFPIHHEPTHNAMD 643 Query: 186 DVYATIAMA 194 D+ AT + Sbjct: 644 DILATAQLL 652 >UniRef50_C4LI81 Putative uncharacterized protein n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LI81_CORK4 Length = 555 Score = 46.9 bits (110), Expect = 0.002, Method: Composition-based stats. Identities = 45/206 (21%), Positives = 76/206 (36%), Gaps = 40/206 (19%) Query: 6 KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPA---DDYLPQPG 62 + +F+ D ET + A QF + E + C+P D+ P Sbjct: 218 SRPPSFIAFDVET--ANEANGSICQFGVVVYHEG--KEAESHTWLCQPPSAWPDFTPATT 273 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 A I GITP + + ++ +L I+ +N +FD R+ Sbjct: 274 A--IHGITPDKVANEPSCH-DRLEQLAALLRKENLPIVAHNA-KFDMVALRDA------- 322 Query: 123 PYAWSWQHDNSRWDLLDVMRAC-----YALRPEGINWPENDDGLPSFRLEHLTKANGIEH 177 A + + D+ + AC AL PE LP+++L + ++ G E Sbjct: 323 --ARAEK-----VDIPHITFACTYLLARALHPE----------LPNYKLTTVAQSAGSEA 365 Query: 178 SNAHDAMADVYATIAMAKLVKTRQPR 203 + HDA+AD A + + PR Sbjct: 366 FHHHDALADARACGEIMLSLCGISPR 391 >UniRef50_B1I518 DNA-directed DNA polymerase n=1 Tax=Candidatus Desulforudis audaxviator MP104C RepID=B1I518_DESAP Length = 236 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 43/190 (22%), Positives = 62/190 (32%), Gaps = 52/190 (27%) Query: 15 DYETFGTHP-ALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDY---LPQPG------AV 64 D ET G P A D A +R V K +DY L P A Sbjct: 53 DTETTGLRPDAGDEVISVACVR------------VVSAKIQNDYFYTLVDPEREVPELAA 100 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYR----NF 120 ITGIT + + + E + + I G+N ++FD N R Sbjct: 101 TITGITTERVQGQPVLEKVLPRMLREM---AGGVITGFN-IQFDLVFLNNGLKRKCGTTL 156 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 P +LDV+ C L+P +F L + + I + Sbjct: 157 NPPM------------VLDVLSLCRILKPRA----------RTFGLGAMAREYQISVKDR 194 Query: 181 HDAMADVYAT 190 H+A+ D T Sbjct: 195 HNALGDALIT 204 >UniRef50_Q47TJ3 DNA polymerase III, epsilon subunit n=10 Tax=Actinomycetales RepID=Q47TJ3_THEFY Length = 250 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 3/81 (3%) Query: 14 HDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQE 73 D ET G + DR A I T ++ + P AV I GI+ + Sbjct: 19 FDIETTGINLEQDRVVTAAIIETAADGSQRTRRTWL---VNPGVEIPPEAVAIHGISTEL 75 Query: 74 ARAKGENEAAFAARIHSLFTV 94 A A G A I L Sbjct: 76 AVADGIPAPVAVAEITDLLEQ 96 >UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51_GARVA Length = 307 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 45/186 (24%), Positives = 64/186 (34%), Gaps = 32/186 (17%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEA 74 D ET G D + +R + N I + KP+ + +TGIT Sbjct: 26 DTETTGLSAYYDEIIEIGILRVRN--NEIVDRYDQLIKPSIEV--DGFITALTGITNDML 81 Query: 75 RAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSR 134 + ++ + S + ILG+N FD F N Sbjct: 82 EDM-PSISSVKNDVLSFISED--IILGHNT-SFDMRFLNEGFKEQL----------SNQY 127 Query: 135 WDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMA 194 D + R Y PE L RL LT G+ H+N H A+AD AT + Sbjct: 128 MDTMQFARKLY---PE----------LKHHRLSDLTDYLGL-HNNEHRALADCIATKELY 173 Query: 195 KLVKTR 200 VK+R Sbjct: 174 DAVKSR 179 >UniRef50_C8X5R2 Exonuclease RNase T and DNA polymerase III n=1 Tax=Desulfohalobium retbaense DSM 5692 RepID=C8X5R2_DESRD Length = 233 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 65/207 (31%), Gaps = 40/207 (19%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDS-EFNVIGEPEVFYCKPADDYLPQPGA----- 63 +F D E G A+R + + C P A Sbjct: 35 SFCVLDTELTGLR-RRHEIISIGAVRIEHLALKPLDRFYTEVC---------PKAWTKTG 84 Query: 64 VLITGITPQEARAKGENEAAFAARIHSLFTVPKT-CILGYNNVRFDDEVTRNIFYRNFYD 122 LI I+PQ+ + + L T ++G+N + D + + ++ Sbjct: 85 TLIHRISPQQCQDA----PKIGKVLPELIAYLGTSLLIGHN-IALDLQFLQKACKKHLGH 139 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG---LPSFRLEHLTKANGIEHSN 179 P +D +R E W D S++L+ L +A G+ Sbjct: 140 PLVHP---------CIDTLRLARVY--EESRWESYYDRFTLRVSYQLQELAQAYGLPCFP 188 Query: 180 AHDAMADVYAT----IAMAKLVKTRQP 202 AH+A +D T + + ++ P Sbjct: 189 AHNAASDALQTAYLFVYLVHKLRETHP 215 >UniRef50_A0JYL8 DNA polymerase III, epsilon subunit n=8 Tax=Micrococcaceae RepID=A0JYL8_ARTS2 Length = 254 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 67/203 (33%), Gaps = 42/203 (20%) Query: 14 HDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQE 73 D ET G + R + D++ +VI E E A + G+T + Sbjct: 30 FDLETTGRNSRAARIVTASVTVVDADGSVITEHEWL---ADPGIEIPAEASEVHGVTTER 86 Query: 74 ARAKGENEAAFAARIHSLFTV---PKTCILGYNNVRFD-----DEVTRNIFYR-N---FY 121 AR +G A + S+ ++ +N +D E R + N Sbjct: 87 ARLEGRPAAEVTRELASVLQGLFDDGIPVIAFNA-SYDFTVLAAESARYGIPQLNRFPVL 145 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 DPY + Q D R G + L L + + NAH Sbjct: 146 DPYIMNKQVDRFR------------------------KGKRT--LTALCEEYKVNLDNAH 179 Query: 182 DAMADVYATIAMAKLVKTRQPRL 204 + AD AT+ M + + P+L Sbjct: 180 TSAADALATLRMLDAMAGKFPKL 202 >UniRef50_Q746C7 Putative uncharacterized protein n=2 Tax=Thermus thermophilus RepID=Q746C7_THET2 Length = 1649 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 44/187 (23%), Positives = 69/187 (36%), Gaps = 24/187 (12%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEA 74 D E T P+ + AA+ D E V +P P +TGI +E Sbjct: 12 DLEATSTDPSEAEVLEVAAV--DGEGRVFHRYLATQ-RPLP---PDHEVFQLTGIPYEEY 65 Query: 75 RAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSR 134 AK + + +LG+N +R+D + + R+ + WQ Sbjct: 66 EAKKVAPKEALEELLAFLG--GRPLLGHNLLRYDLPLLQ----RHLEEAGLPRWQG---- 115 Query: 135 WDLLDVMRACYALRPEGINWPENDDGLPSFRLEHL-TKANGIEHSNAHDAMADVYATIAM 193 + LD +R + L +P GL +RL L G AH A+ D AT+A+ Sbjct: 116 -EALDTLRLAHLL------FPTPPGGLEGYRLGDLYAFLLGRPLEGAHRALNDAQATLAV 168 Query: 194 AKLVKTR 200 + R Sbjct: 169 FHRLLDR 175 >UniRef50_A4NXF4 Oligoribonuclease n=1 Tax=Haemophilus influenzae 22.4-21 RepID=A4NXF4_HAEIN Length = 115 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 14/51 (27%), Positives = 23/51 (45%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 58 + ++ D E G P +R + A I TD N++ E V +D+ L Sbjct: 5 KQNLIWIDLEMTGLDPEKERIIEIATIVTDKNLNILAEGPVLAVHQSDELL 55 >UniRef50_D0LL62 Exonuclease RNase T and DNA polymerase III n=1 Tax=Haliangium ochraceum DSM 14365 RepID=D0LL62_HALO1 Length = 308 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 25/108 (23%), Positives = 42/108 (38%), Gaps = 8/108 (7%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 L D ET GT D+ + +F + + + D +P A + GI+ Sbjct: 6 LLVFDVETTGTDRRRDQIIELC-----VQFGLGDDAPNRVWRIRPDVAIEPAAQEVHGIS 60 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYR 118 + A+ A + LF T ++GYN V FD + + + R Sbjct: 61 MDDL-AECPRFPEVADELRELFA-SATVLVGYN-VSFDIGMLQAEYER 105 >UniRef50_Q2SSE0 DNA polymerase III, alpha subunit, Gram-positive type n=4 Tax=Mollicutes RepID=Q2SSE0_MYCCT Length = 1479 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 50/237 (21%), Positives = 81/237 (34%), Gaps = 54/237 (22%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 62 N + + +F D ET G P LD +F AI + + + D L +P Sbjct: 424 NQNLKDAKMVFFDLETTGLSPELDEIIEFGAIEYNFKTGE---------RKKIDILIKPK 474 Query: 63 AVL------ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIF 116 + L +T I + K E AF I+ + ++ +N FD + Sbjct: 475 SKLKDFTKKLTNINEEMLENKPGIEVAF-KEINQVI--KDAILVAHNA-NFDYTFLSH-- 528 Query: 117 YRNFYDPYAWSWQHDNSRWD--LLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANG 174 WS + + + ++D + + PE L S RL L K Sbjct: 529 ---------WSEKLGYGKLENTIIDTLTISRIIYPE----------LKSHRLGSLAKRVN 569 Query: 175 IEHSN--AHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPL 229 I + AH D A ++ R+ D R K K+ D ++ PL Sbjct: 570 ISYDPSIAHRGDYD-------ADILADIYERMLD---DTRKKTKITIDSDWDKINPL 616 >UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8CW68_HALOH Length = 1397 Score = 46.5 bits (109), Expect = 0.002, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 68/190 (35%), Gaps = 33/190 (17%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 + +TF+ D ET G + + + A++ VI E F KP + +P + Sbjct: 381 ESATFVVFDLETTGLNKFKNEIIEIGAVKV-KSGKVIDEFSSF-VKPGE-SIPN-KITEL 436 Query: 67 TGITPQEARAKGENE---AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 TGIT + + E F I + ++ +N FD + + Sbjct: 437 TGITNEMVSRAPDIEGVIGDFLEFI------DGSILVAHNA-DFDYGFLQVALKK----- 484 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDA 183 + + +LD + AL P+ L + +L L + + N H A Sbjct: 485 ----TGQGDISYPVLDTLTLSRALLPD----------LSNHKLNTLARHLNVRLDNHHRA 530 Query: 184 MADVYATIAM 193 + D AT + Sbjct: 531 VEDARATSEI 540 >UniRef50_Q4UVB0 Oligoribonuclease n=29 Tax=Bacteria RepID=ORN_XANC8 Length = 194 Score = 46.1 bits (108), Expect = 0.002, Method: Composition-based stats. Identities = 36/219 (16%), Positives = 64/219 (29%), Gaps = 60/219 (27%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 M ++ ++ D E G D + A I TD++ NV+ E + + L Sbjct: 1 MADNVAGNDRLIWIDLEMTGLDTDRDSIIEIATIVTDAQLNVLAEGPELAIAHSLETL-- 58 Query: 61 PGAV------------LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFD 108 A+ L + + + EA A + + + G N++ D Sbjct: 59 -EAMDEWNRNQHRRSGLWQRVLDSQV-THAQAEAQTVAFLSEWIRAGASPMCG-NSICQD 115 Query: 109 DEVT--------RNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG 160 R YRN D+ + P Sbjct: 116 RRFLHRQMSRLERYFHYRNL---------------DVSTIKELARRWAP----------- 149 Query: 161 LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKT 199 A+G S+AH A++DV +I + + Sbjct: 150 ---------AVASGFAKSSAHTALSDVRDSIDELRHYRQ 179 >UniRef50_B2A7J4 DNA polymerase III, epsilon subunit n=1 Tax=Natranaerobius thermophilus JW/NM-WN-LF RepID=B2A7J4_NATTJ Length = 864 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 71/197 (36%), Gaps = 27/197 (13%) Query: 4 DGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 63 + +Q+ + D ET G D + AA++ + V+ E + + P + Sbjct: 493 NKFEQNKLVVFDVETTGLDTTKDEIIELAALKAGKD-GVVDEFHEY----LRNSKPVGES 547 Query: 64 VLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 + GI+ Q +G+ A + ++G+N V +D + N + Sbjct: 548 FQVHGISDQVLLEQGKPPEKSLASFTNFI--DDCDLVGHN-VNYDITMVENQCKKLLNQD 604 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDA 183 +D +D+ R + P + + LE L + I H A Sbjct: 605 LELHG------YDTVDISRRYF---------PRLEK----YNLESLCEDLQISSKPTHRA 645 Query: 184 MADVYATIAMAKLVKTR 200 M DV AT + +++ + Sbjct: 646 MDDVEATFELLQILLEK 662 >UniRef50_A7A526 Putative uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A526_BIFAD Length = 256 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 41/182 (22%), Positives = 60/182 (32%), Gaps = 38/182 (20%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL-ITGITPQE 73 D ET G P+ DR + AIR + G P Y + + P P + + G+T + Sbjct: 90 DLETTGFSPSDDRIVEIGAIRVRN-----GRPVKRYSQLINPQRPLPEEITRLNGLTDAD 144 Query: 74 ARAK---GENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 R + + F I ++G+N FD Sbjct: 145 LRNQPTVDQVLPDFIRFI------GNDTLIGHNINEFDAAF--------LLANTTRLGMR 190 Query: 131 --DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 N D L + RA Y PE P RL + + GI + +H A D Sbjct: 191 HIGNKTIDTLPLDRALY---PEE----------PKHRLVDIIRRFGIAQTESHRAADDAL 237 Query: 189 AT 190 T Sbjct: 238 QT 239 >UniRef50_Q47VZ4 Oligoribonuclease n=73 Tax=cellular organisms RepID=ORN_COLP3 Length = 181 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 39/211 (18%), Positives = 66/211 (31%), Gaps = 52/211 (24%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLP--QPG 62 S ++ D E G P D + A I TDSE N++ + +F DD L P Sbjct: 2 AGNDSNLIWLDLEMTGLEPVEDVILEIAIIITDSELNILAQGPIFAISQTDDVLDNMNPW 61 Query: 63 AVLITGIT--PQEARAKGENEAAFAAR----IHSLFTVPKTCILGYNNVRFDDEVTR--- 113 + G + Q R + A + K+ + G N++ D Sbjct: 62 CIEHHGKSGLTQRCRDSEVSLAHATKESLAFVQEWVPQGKSPMCG-NSIGQDRRFINKYM 120 Query: 114 -----NIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEH 168 + YRN D+ + +PE + Sbjct: 121 PDFEDHFHYRNL---------------DVSTIKELAKRWKPEVLE--------------- 150 Query: 169 LTKANGIEHSNAHDAMADVYATIAMAKLVKT 199 + + AH A+ D+ +IA K+ + Sbjct: 151 -----SVVKTGAHLALDDIKESIAELKVYRE 176 >UniRef50_UPI000185C525 DNA polymerase III, epsilon subunit n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C525 Length = 529 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 65/202 (32%), Gaps = 31/202 (15%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVF---YCKPADDYL 58 ++D +TF+ D ET G D + AI+T IG F + D Sbjct: 14 VDDSLFNTTFVVVDLETTGLKAKNDHIIEIGAIKTRGG-KTIGTFSSFIDPGMEIPDHI- 71 Query: 59 PQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYR 118 +TGIT + + F + +N +FD R Sbjct: 72 -----TSLTGITTADVET--APQLGTVITQFLEFARGSVWVA--HNAKFDIGFLRQACTD 122 Query: 119 NFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHS 178 D W S D L + R + + SF+L L + G + Sbjct: 123 LGLD-----W-PSPSVVDTLTLARRV-----------LDRSQVGSFKLSQLARYVGSPNR 165 Query: 179 NAHDAMADVYATIAMAKLVKTR 200 AH A+ D AT+ + + R Sbjct: 166 PAHRALDDAIATVDVLHYLMER 187 >UniRef50_A3D8L9 Exonuclease, RNase T and DNA polymerase III n=4 Tax=Shewanella baltica RepID=A3D8L9_SHEB5 Length = 204 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 45/215 (20%), Positives = 69/215 (32%), Gaps = 52/215 (24%) Query: 11 FLFHDYETFGTHPALDR---------PAQFAAIRTDSEFNVIGEPEVFYCKPADDYLP-- 59 FLF D ET G + LD + A I TDSE N +GE D+++ Sbjct: 5 FLFGDLETGGLNGRLDNGMLGMEYYPIFELAFIVTDSELNQVGEALHVVVHQDDEHIARS 64 Query: 60 QPGAVLITGITPQEA--RAKGENEAAFAARI-----------HSLFTVPKTCILGYNNVR 106 A+ + + A RA + A + H G N++ Sbjct: 65 HEWAIDVHTKSGLLAAVRASSVSLAQAEQMVIEHLKALGIPKHDRKAKTGVVFAG-NSIM 123 Query: 107 FDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRL 166 FD P + H + D+ + A A PE Sbjct: 124 FDRSFIMCQM------PELHEYMHY-RQLDISALGLAARAWAPEV--------------- 161 Query: 167 EHLTKANGIEHSN-AHDAMADVYATIAMAKLVKTR 200 + N I+ H+A+AD+ +IA K + Sbjct: 162 ----ERNAIKAKQYQHEALADIRESIAELKYYRDE 192 >UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacteria RepID=C9S0C0_GEOSY Length = 1444 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 45/227 (19%), Positives = 79/227 (34%), Gaps = 30/227 (13%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 + T++ D ET G + + AA++ + +I F + + + Sbjct: 425 SEETYVVFDVETTGLSAVYNTIIELAAVKV-KDGEIIDRFMSF---ANPGHPLSVTTMEL 480 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 TGIT + + + + A + + T + +N FD R Sbjct: 481 TGITDEMVKDAPKPDEVLARFV--DWAGDATLVA--HNASFDIGFLNAGLARMGR----- 531 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 + N D L++ R Y P+ L + RL L K IE + H A+ D Sbjct: 532 -GKIANPVIDTLELARFLY---PD----------LKNHRLNTLCKKFDIELTQHHRAIYD 577 Query: 187 VYATIAMA-KLVKTRQPR--LFDYLFTHRNKHKLMALIDVPQMKPLV 230 AT + +L+K + R LF R + + P L+ Sbjct: 578 AEATGHLLMRLLKEAEERGILFHDELNSRTHSEASYRLARPFHVTLL 624 >UniRef50_C4VNH6 DNA polymerase III n=4 Tax=Lactobacillus jensenii RepID=C4VNH6_9LACO Length = 316 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 62/186 (33%), Gaps = 24/186 (12%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEA 74 D ET G P DR + A I+ V+ + P ++ +PQ L GI + Sbjct: 39 DIETTGLSPYRDRVTELAGIKV-RNGKVVDKYSQLVKHPKNNKVPQFITKL-NGIDEKLI 96 Query: 75 RAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSR 134 +G + I+GYN V FD F + + + +N Sbjct: 97 LTQGIPVKEAITDFRNFIGED--VIVGYN-VNFD-----LNFIYDLCEKFNLERLSNN-Y 147 Query: 135 WDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMA 194 D+L R + RL + GI S AH + D T A+ Sbjct: 148 IDVLHFSRVFF-------------KKESHNRLLDCIQRLGISESEAHRGLKDSLDTKAVF 194 Query: 195 KLVKTR 200 + + + Sbjct: 195 DIYQKQ 200 >UniRef50_UPI00019768DE DNA polymerase III alpha subunit n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI00019768DE Length = 180 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 40/207 (19%), Positives = 65/207 (31%), Gaps = 34/207 (16%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKP-ADDYLP 59 M+ DG ++ D ET G D +F A++ V +P Y + Sbjct: 1 MLPDGTLPDDYVVLDLETTGVSWYRDTIIEFGAVKV-----VDRKPVDTYQQLVNPMRNL 55 Query: 60 QPGAVLITGITPQEARAKGENE---AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIF 116 P +TGITP + F ++G+N ++FD + Sbjct: 56 NPFITQLTGITPDMLEPAPTLDTVLPDFLRWC------GDDAMIGHNIMQFDIKFIDLAA 109 Query: 117 YRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE 176 R + N D L + R+ Y RL L + I Sbjct: 110 QRILHHAVP------NRIIDTLQMSRSMYPQYNR-------------HRLVDLIQRFDIA 150 Query: 177 HSNAHDAMADVYATIAMAKLVKTRQPR 203 H A++D T + ++ Q R Sbjct: 151 DVEEHRALSDAEQTQMCFEYMRDEQRR 177 >UniRef50_C0YII7 DNA-directed DNA polymerase n=1 Tax=Chryseobacterium gleum ATCC 35910 RepID=C0YII7_9FLAO Length = 1555 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 46/191 (24%), Positives = 66/191 (34%), Gaps = 25/191 (13%) Query: 11 FLFHDYETFGTHPALDRPA----------QFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 +L D ET G + P Q A D + N+I + KP +P Sbjct: 2 YLIFDTETTGLPKNFNAPLSDSDNWPRMVQIAWQLHDDDGNLIENQDYI-IKPEGYDIPF 60 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYR-N 119 A I GIT + A +G + + + G+N V FD + FYR N Sbjct: 61 -NAARIHGITTKIANEEGRDLQEILEEFSKVLEKVRVVS-GHN-VEFDYNIVGAEFYRKN 117 Query: 120 FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSN 179 D + D + ++ A + G P E K G + Sbjct: 118 LKDNLQEKPK-----ADTM-ILGADFCQLGGG----RGGRFKPPKLEELYEKLYGSKFDE 167 Query: 180 AHDAMADVYAT 190 AH+A ADV AT Sbjct: 168 AHNAAADVNAT 178 >UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z7T3_9FIRM Length = 237 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 67/206 (32%), Gaps = 33/206 (16%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEA 74 D ET G D+ + A++ + + P +TGIT + Sbjct: 9 DIETSGIRVKWDKIIEIGAVKV-RDGKAVDTFSEL---INPGLKLSPYITELTGITDEML 64 Query: 75 RAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSR 134 + K E I F I+G+N + FD + +N + + Sbjct: 65 KDKPFIEEVLPRFI--EFAGDD-VIMGHN-IMFDYSFLK----QNAINQKLKFDKMG--- 113 Query: 135 WDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMA 194 D L + R + GL S LE+L GI N H A D T + Sbjct: 114 IDTLKIAR-------------KTLKGLESRGLEYLCNYYGIADENHHRAFNDAEVTSKLY 160 Query: 195 KLVKTR----QPRLFD-YLFTHRNKH 215 ++ + P LF+ Y + K Sbjct: 161 NVLMEKFGTESPGLFEPYQLVFKAKK 186 >UniRef50_A7RWU1 Predicted protein n=2 Tax=Nematostella vectensis RepID=A7RWU1_NEMVE Length = 461 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 40/213 (18%), Positives = 69/213 (32%), Gaps = 43/213 (20%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 TF+ D ET G + D Q A + G+P A GI Sbjct: 155 TFVMFDTETTGLDTSNDVIIQLACA------SENGDPLHSRYMFPGGRSIGSEATNAHGI 208 Query: 70 T------------------PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEV 111 + ++ G E ++H + + C++ + FD + Sbjct: 209 SEAFIDGSRVLLKDGRPLADVASQKDGLREFIAFLKMHQSQSPKRLCLVAHYGDSFDFRL 268 Query: 112 TRNIFYR-NFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLT 170 N R N + + + D + V+RA P + SF+ E L+ Sbjct: 269 LINCLKRHNLMNEFI---STGSVLLDSVKVVRASKKQEKS----PFDS----SFKKESLS 317 Query: 171 KAN----GIEHSNAHDAMADVYATIAMAKLVKT 199 + G+ HDA AD A++K++ Sbjct: 318 ALHGHLFGVPIDRPHDAQADA---CALSKVLMK 347 >UniRef50_D1B3F1 DNA polymerase III, epsilon subunit n=1 Tax=Sulfurospirillum deleyianum DSM 6946 RepID=D1B3F1_SULD5 Length = 260 Score = 46.1 bits (108), Expect = 0.003, Method: Composition-based stats. Identities = 46/192 (23%), Positives = 67/192 (34%), Gaps = 29/192 (15%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F D E G+ PALD + A+ + ++GE D LP+ V +TGIT Sbjct: 71 FCIVDIEANGSKPALDAIIEIGAVMVEKG-KIVGEFSSL---AKTDVLPE-SIVQLTGIT 125 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 +E LF + +NV FD + + P Sbjct: 126 LEELSF--APSLNSVLEGFRLFIKDAVFVA--HNVNFDYYFISHSLEMAGFGPLL----- 176 Query: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190 N R D +D+ R + I P+ + L L + GI N H A+ D AT Sbjct: 177 -NRRLDTIDLAR-------KCIEAPK-------YGLSALAEHLGITFENHHRALYDAKAT 221 Query: 191 IAMAKLVKTRQP 202 + V P Sbjct: 222 TEVLLHVFNNLP 233 >UniRef50_A5FH18 DNA polymerase III, epsilon subunit n=2 Tax=Flavobacteria RepID=A5FH18_FLAJ1 Length = 209 Score = 45.7 bits (107), Expect = 0.003, Method: Composition-based stats. Identities = 39/209 (18%), Positives = 70/209 (33%), Gaps = 24/209 (11%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 +++ F+ D ET G DR A+ + VI + F D+ + A I Sbjct: 21 EETRFVVLDTETTGFDYENDRILCIGALALQNG--VISVQDSFEIYLHQDHYDKSTA-QI 77 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 GI ++ K E + + I+ ++ V FD + RN Sbjct: 78 HGIL-KDLLVKRPTELEALQQFLDFLG--DSIIIAHHTV-FDVTMINKALERNGLPQLT- 132 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 N D Y + I + + L+ L I + H A+ D Sbjct: 133 -----NKTLD------TAYLYKKTLIQSHLFER-KDHYTLDDLADKFDISKKDRHTALGD 180 Query: 187 VYAT----IAMAKLVKTRQPRLFDYLFTH 211 Y T + + K ++ ++ + LF + Sbjct: 181 AYITAIAFLKIVKKLREKKAVSLNQLFKN 209 >UniRef50_A1VJH5 Exonuclease, RNase T and DNA polymerase III n=8 Tax=Proteobacteria RepID=A1VJH5_POLNA Length = 220 Score = 45.7 bits (107), Expect = 0.004, Method: Composition-based stats. Identities = 37/187 (19%), Positives = 65/187 (34%), Gaps = 16/187 (8%) Query: 15 DYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEA 74 D ET G + D A+R + E +P L +V + + Q+ Sbjct: 46 DCETTGLNTRTDDIIAIGAVRIRDNRIMTSERLELLVRPEKRRL-SAESVRVHRLREQDV 104 Query: 75 RAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSR 134 + A ++ + + P ++GY + FD + + + P Sbjct: 105 AQGISADEAMMKLMYFIGSRP---LVGY-YLEFDLAMINRVLF-----PMLGMGLPQPK- 154 Query: 135 WDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMA 194 ++V Y + + D G R E L K + +AHDA+ D A +A Sbjct: 155 ---IEVSSMYYDYKFHQLPHHARDSGSIDLRFESLMKDLNLPLWSAHDALND--AIMAAL 209 Query: 195 KLVKTRQ 201 +K RQ Sbjct: 210 AFLKLRQ 216 Searching..................................................done Results from round 3 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_P04995 Exodeoxyribonuclease I n=282 Tax=Bacteria RepID=... 572 e-162 UniRef50_B0BNV2 Exonuclease I n=17 Tax=Gammaproteobacteria RepID... 542 e-152 UniRef50_Q483M2 Exodeoxyribonuclease I n=21 Tax=Gammaproteobacte... 520 e-146 UniRef50_Q605A2 Exodeoxyribonuclease I n=1 Tax=Methylococcus cap... 516 e-145 UniRef50_C6XFI1 Exonuclease I n=1 Tax=Candidatus Liberibacter as... 511 e-143 UniRef50_Q1QT40 Exodeoxyribonuclease I subunit C n=10 Tax=Proteo... 510 e-143 UniRef50_A6VXX3 Exodeoxyribonuclease I n=4 Tax=Oceanospirillales... 508 e-142 UniRef50_Q4K7B4 Exodeoxyribonuclease I n=25 Tax=Pseudomonas RepI... 504 e-141 UniRef50_C1DSN1 Exodeoxyribonuclease I n=1 Tax=Azotobacter vinel... 504 e-141 UniRef50_Q0AEW3 Exodeoxyribonuclease I subunit C n=2 Tax=Nitroso... 500 e-140 UniRef50_A3WL65 Exonuclease I n=2 Tax=Idiomarina RepID=A3WL65_9GAMM 496 e-138 UniRef50_D2UDX2 Putative exodeoxyribonucleaseIprotein n=1 Tax=Xa... 494 e-138 UniRef50_Q21I25 Exodeoxyribonuclease I subunit C n=2 Tax=Gammapr... 493 e-138 UniRef50_B3PLL7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacter... 492 e-137 UniRef50_Q2P315 Exodeoxyribonuclease I n=17 Tax=Xanthomonadaceae... 492 e-137 UniRef50_A4ADV7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacter... 481 e-134 UniRef50_B8KPJ8 Exodeoxyribonuclease I n=1 Tax=gamma proteobacte... 477 e-133 UniRef50_Q21WQ6 Exodeoxyribonuclease I subunit C n=24 Tax=cellul... 476 e-133 UniRef50_Q8K923 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidico... 471 e-131 UniRef50_A0Z9I3 Exonuclease n=1 Tax=marine gamma proteobacterium... 470 e-131 UniRef50_B4SPA5 Exodeoxyribonuclease I n=3 Tax=Stenotrophomonas ... 465 e-129 UniRef50_A4BJV3 Putative exodeoxyribonuclease i protein n=1 Tax=... 451 e-125 UniRef50_UPI0000E0E98F exodeoxyribonuclease I n=1 Tax=Rhodobacte... 450 e-125 UniRef50_A5KSP8 Exodeoxyribonuclease I n=2 Tax=candidate divisio... 448 e-124 UniRef50_P57620 Exodeoxyribonuclease I n=2 Tax=Buchnera aphidico... 435 e-120 UniRef50_Q89A43 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidico... 427 e-118 UniRef50_A5CVQ8 Exodeoxyribonuclease I n=4 Tax=Gammaproteobacter... 423 e-117 UniRef50_Q056Y2 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidico... 419 e-115 UniRef50_D0KZN4 Exodeoxyribonuclease I n=1 Tax=Halothiobacillus ... 409 e-113 UniRef50_Q7VQX2 Exodeoxyribonuclease I n=2 Tax=Candidatus Blochm... 407 e-112 UniRef50_B8KX06 Exonuclease I n=1 Tax=gamma proteobacterium NOR5... 390 e-107 UniRef50_B5K7E4 Exodeoxyribonuclease I n=3 Tax=Rhodobacteraceae ... 348 3e-94 UniRef50_D0RRC0 Exodeoxyribonuclease I n=1 Tax=alpha proteobacte... 347 6e-94 UniRef50_B6J811 Exodeoxyribonuclease I n=7 Tax=Gammaproteobacter... 345 2e-93 UniRef50_A3XEM3 Exonuclease I n=3 Tax=Rhodobacteraceae RepID=A3X... 343 6e-93 UniRef50_B9NSM4 Exodeoxyribonuclease I n=1 Tax=Rhodobacteraceae ... 335 3e-90 UniRef50_C0QKN8 SbcB n=1 Tax=Desulfobacterium autotrophicum HRM2... 333 6e-90 UniRef50_A4IYM7 Exonuclease n=19 Tax=Francisella RepID=A4IYM7_FRATW 316 1e-84 UniRef50_Q07NS2 Exodeoxyribonuclease I subunit C n=5 Tax=Alphapr... 309 2e-82 UniRef50_A4GJC0 Exodeoxyribonuclease I n=1 Tax=uncultured marine... 298 3e-79 UniRef50_C0B120 Putative uncharacterized protein n=2 Tax=Enterob... 297 6e-79 UniRef50_B4WCZ9 Exonuclease family n=1 Tax=Brevundimonas sp. BAL... 291 5e-77 UniRef50_Q4FND4 Exodeoxyribonuclease I n=2 Tax=Candidatus Pelagi... 288 2e-76 UniRef50_B6BR92 Exodeoxyribonuclease I n=1 Tax=Candidatus Pelagi... 276 2e-72 UniRef50_A1ZTJ0 Exodeoxyribonuclease I, putative n=1 Tax=Microsc... 272 2e-71 UniRef50_A4V7F6 Putative exodeoxyribonuclease n=1 Tax=Pseudomona... 255 2e-66 UniRef50_UPI0001911F1B exonuclease I n=1 Tax=Salmonella enterica... 253 1e-65 UniRef50_A2R5F8 Remark: it is assumed (Fragment) n=1 Tax=Aspergi... 234 4e-60 UniRef50_C5B4J5 Putative Exodeoxyribonuclease I n=1 Tax=Methylob... 231 4e-59 UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicu... 171 4e-41 UniRef50_Q0SVV0 Helicase/exonuclease n=12 Tax=Clostridium RepID=... 159 3e-37 UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminoc... 156 2e-36 UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburi... 155 3e-36 UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermo... 154 6e-36 UniRef50_P47277 DNA polymerase III polC-type n=2 Tax=Mycoplasma ... 146 1e-33 UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogac... 145 3e-33 UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive... 145 3e-33 UniRef50_C1YUT4 Exonuclease, DNA polymerase III, epsilon subunit... 145 4e-33 UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia Re... 144 5e-33 UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyc... 144 7e-33 UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moor... 144 1e-32 UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Trepo... 142 2e-32 UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidob... 141 5e-32 UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax... 141 6e-32 UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicu... 140 1e-31 UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7... 139 3e-31 UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaero... 137 7e-31 UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncult... 137 8e-31 UniRef50_C1FD33 Exonuclease and DNA helicase n=3 Tax=cellular or... 137 1e-30 UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hy... 137 1e-30 UniRef50_D1VLC1 DNA polymerase III, epsilon subunit n=1 Tax=Fran... 136 1e-30 UniRef50_C7G6P2 DNA polymerase III PolC-type n=1 Tax=Roseburia i... 136 1e-30 UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit ... 136 2e-30 UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlam... 135 4e-30 UniRef50_D2RJV7 DNA polymerase III, epsilon subunit n=1 Tax=Acid... 135 5e-30 UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae R... 134 5e-30 UniRef50_C3RQT5 DNA polymerase III subunit epsilon n=1 Tax=Molli... 134 6e-30 UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Para... 134 6e-30 UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=1... 134 6e-30 UniRef50_Q21VB4 DNA polymerase III, epsilon subunit n=7 Tax=Beta... 134 6e-30 UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamyd... 134 9e-30 UniRef50_B9L7M7 Exonuclease n=3 Tax=cellular organisms RepID=B9L... 133 1e-29 UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Dein... 133 1e-29 UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA poly... 133 2e-29 UniRef50_A6DIP6 Exonuclease n=1 Tax=Lentisphaera araneosa HTCC21... 132 3e-29 UniRef50_C0ECE2 Putative uncharacterized protein n=1 Tax=Clostri... 132 3e-29 UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit ... 132 3e-29 UniRef50_Q9PQB4 DNA polymerase III polC-type n=17 Tax=Ureaplasma... 132 4e-29 UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepI... 131 4e-29 UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Vict... 131 5e-29 UniRef50_A5I1F6 Helicase, UvrD/REP/exonuclease family protein n=... 130 7e-29 UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit... 130 8e-29 UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Para... 130 1e-28 UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxid... 130 1e-28 UniRef50_A2SRZ3 Exonuclease, RNase T and DNA polymerase III n=1 ... 130 1e-28 UniRef50_D1BUD4 DNA polymerase III, epsilon subunit n=1 Tax=Xyla... 130 1e-28 UniRef50_C8WA42 DNA polymerase III, epsilon subunit n=1 Tax=Atop... 129 2e-28 UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1... 129 2e-28 UniRef50_Q83YZ1 DNA polymerase III alpha subunit n=1 Tax=Peanut ... 129 4e-28 UniRef50_UPI0001698261 Exodeoxyribonuclease I n=1 Tax=Endoriftia... 128 4e-28 UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:Dna... 128 4e-28 UniRef50_B7GHT3 DNA polymerase III, epsilon subunit and Rad3-rel... 127 8e-28 UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependen... 127 9e-28 UniRef50_C9KN36 Helicase, UvrD/REP/exonuclease family protein n=... 127 1e-27 UniRef50_Q6KIN3 DNA polymerase III alpha subunit n=1 Tax=Mycopla... 127 1e-27 UniRef50_A8RD59 Putative uncharacterized protein n=2 Tax=unclass... 126 2e-27 UniRef50_Q67M39 DNA polymerase III-like protein n=1 Tax=Symbioba... 126 2e-27 UniRef50_C7LWI5 DNA polymerase III, epsilon subunit n=2 Tax=Delt... 125 3e-27 UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit ... 125 3e-27 UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, pu... 125 3e-27 UniRef50_D1R5I0 Putative uncharacterized protein n=1 Tax=Parachl... 125 3e-27 UniRef50_C7TCP7 DNA helicase n=8 Tax=Lactobacillus RepID=C7TCP7_... 125 3e-27 UniRef50_B9XHY8 DNA-directed DNA polymerase n=1 Tax=bacterium El... 125 4e-27 UniRef50_A3XHM4 DNA polymerase III, epsilon subunit n=1 Tax=Leeu... 124 5e-27 UniRef50_C9RIR1 DNA polymerase III, epsilon subunit n=1 Tax=Fibr... 124 5e-27 UniRef50_Q38X67 Putative ATP-dependent helicase, DinG family n=1... 124 6e-27 UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4... 124 6e-27 UniRef50_Q8EUK5 DNA polymerase III subunit alpha n=1 Tax=Mycopla... 124 6e-27 UniRef50_A5IXK4 DNA polymerase III alpha subunit n=1 Tax=Mycopla... 124 6e-27 UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 124 7e-27 UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Ther... 124 7e-27 UniRef50_A8EU91 DNA polymerase III, epsilon subunit n=5 Tax=Epsi... 124 7e-27 UniRef50_B8FZZ1 DnaQ family exonuclease/DinG family helicase n=2... 124 8e-27 UniRef50_B0B7H7 DNA polymerase III, epsilon chain n=13 Tax=Chlam... 124 8e-27 UniRef50_C9PT90 Putative uncharacterized protein n=1 Tax=Prevote... 123 1e-26 UniRef50_Q04F80 DNA polymerase III, alpha subunit (Gram-positive... 123 1e-26 UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=... 123 1e-26 UniRef50_B5ZV55 DNA polymerase III, epsilon subunit n=23 Tax=Alp... 123 1e-26 UniRef50_Q041D1 DNA polymerase III, alpha subunit (Gram-positive... 123 1e-26 UniRef50_A1ZKT0 Exonuclease n=1 Tax=Microscilla marina ATCC 2313... 123 2e-26 UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit... 122 2e-26 UniRef50_B3T077 Putative exonuclease n=1 Tax=uncultured marine m... 122 2e-26 UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, pu... 122 2e-26 UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibr... 122 2e-26 UniRef50_A9HX18 Putative exonuclease n=1 Tax=Bordetella petrii D... 122 3e-26 UniRef50_C7H6D8 DNA polymerase III, alpha subunit n=4 Tax=Clostr... 122 3e-26 UniRef50_Q03C57 3'-5' exonuclease and CRISPR-associated protein ... 122 3e-26 UniRef50_A9DMS8 DNA polymerase III, epsilon subunit n=1 Tax=Kord... 122 3e-26 UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candida... 122 3e-26 UniRef50_C0A8I6 DNA-directed DNA polymerase n=1 Tax=Opitutaceae ... 122 4e-26 UniRef50_Q3B5G9 Exonuclease n=3 Tax=Chlorobium/Pelodictyon group... 120 8e-26 UniRef50_A4U2R7 DNA polymerase III, epsilon subunit n=1 Tax=Magn... 120 1e-25 UniRef50_Q1DB51 Exonuclease n=3 Tax=Cystobacterineae RepID=Q1DB5... 120 1e-25 UniRef50_B3PN84 DNA polymerase III subunit alpha n=2 Tax=Mycopla... 120 2e-25 UniRef50_B8GAH5 DNA polymerase III, epsilon subunit n=1 Tax=Chlo... 119 2e-25 UniRef50_C2BET5 3'-5' exonuclease and CRISPR-associated Cas2 fam... 119 2e-25 UniRef50_UPI0000D537B4 Exodeoxyribonuclease I n=1 Tax=Psychrofle... 118 5e-25 UniRef50_B4S7Q3 Exonuclease RNase T and DNA polymerase III n=1 T... 117 7e-25 UniRef50_C9ZG17 Putative DNA polymerase III, epsilon chain (EC 2... 117 7e-25 UniRef50_D1W6A9 UvrD/REP helicase n=3 Tax=Prevotella RepID=D1W6A... 117 1e-24 UniRef50_B7GKX3 Exonuclease n=2 Tax=Bacillaceae RepID=B7GKX3_ANOFW 117 1e-24 UniRef50_C5WML0 Putative uncharacterized protein Sb01g037840 n=1... 117 1e-24 UniRef50_A8LH88 Exonuclease RNase T and DNA polymerase III n=2 T... 117 1e-24 UniRef50_UPI0001AEDE41 DNA polymerase III n=2 Tax=Streptomyces R... 116 2e-24 UniRef50_D1PV56 DNA-directed DNA polymerase III epsilon subunit ... 116 2e-24 UniRef50_B1C737 Putative uncharacterized protein n=1 Tax=Anaerof... 115 3e-24 UniRef50_Q5SK39 DNA polymerase III epsilon chain-like protein n=... 115 3e-24 UniRef50_Q0JYK3 Putative exonuclease n=1 Tax=Ralstonia eutropha ... 115 3e-24 Sequences not found previously or not previously below threshold: UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Haloth... 143 1e-32 UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacte... 139 2e-31 UniRef50_Q8RA32 DNA polymerase III polC-type n=5 Tax=Clostridia ... 138 4e-31 UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clos... 138 5e-31 UniRef50_C4LI21 Putative uncharacterized protein n=1 Tax=Coryneb... 135 4e-30 UniRef50_A5Z9S3 Putative uncharacterized protein n=1 Tax=Eubacte... 133 1e-29 UniRef50_C7GFY3 DNA polymerase III PolC-type (Fragment) n=3 Tax=... 131 5e-29 UniRef50_Q38W73 DNA polymerase III polC-type n=246 Tax=Bacilli R... 131 6e-29 UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusoba... 130 9e-29 UniRef50_Q8XJR3 DNA polymerase III polC-type n=37 Tax=Clostridia... 130 9e-29 UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candida... 130 1e-28 UniRef50_Q895K2 DNA polymerase III polC-type n=13 Tax=Clostridia... 130 1e-28 UniRef50_B0MME8 Putative uncharacterized protein n=3 Tax=Clostri... 130 1e-28 UniRef50_D1AWZ0 DNA polymerase III, alpha subunit n=1 Tax=Strept... 130 1e-28 UniRef50_UPI000185C525 DNA polymerase III, epsilon subunit n=1 T... 130 2e-28 UniRef50_UPI0001BCC2A4 DNA polymerase III PolC n=1 Tax=Enterococ... 129 3e-28 UniRef50_C0EF57 Putative uncharacterized protein n=1 Tax=Clostri... 128 5e-28 UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepI... 127 7e-28 UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Cand... 127 7e-28 UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacte... 127 8e-28 UniRef50_B3R8V7 DNA polymerase III, epsilon subunit + GIY-YIG en... 126 2e-27 UniRef50_B0S1A9 DNA polymerase III alpha subunit n=3 Tax=Clostri... 126 2e-27 UniRef50_A5KMD9 Putative uncharacterized protein n=5 Tax=Clostri... 125 2e-27 UniRef50_Q049V0 DNA polymerase III, alpha subunit (Gram-positive... 125 4e-27 UniRef50_A0QF17 DNA polymerase III, epsilon subunit n=7 Tax=Acti... 125 4e-27 UniRef50_D0MI24 DNA polymerase III, epsilon subunit n=1 Tax=Rhod... 125 4e-27 UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2... 125 4e-27 UniRef50_UPI0000510268 hypothetical protein BlinB_15797 n=1 Tax=... 125 5e-27 UniRef50_C3RL58 DNA-directed DNA polymerase n=4 Tax=Bacteria Rep... 125 5e-27 UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus Rep... 124 5e-27 UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalili... 124 8e-27 UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A... 124 8e-27 UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacte... 124 8e-27 UniRef50_A5TTA5 DNA-directed DNA polymerase III alpha subunit n=... 124 8e-27 UniRef50_C0WAB0 DNA polymerase III n=1 Tax=Acidaminococcus sp. D... 123 1e-26 UniRef50_A9BIM3 DNA polymerase III, alpha subunit n=1 Tax=Petrot... 123 2e-26 UniRef50_A6P0N2 Putative uncharacterized protein n=1 Tax=Bactero... 122 2e-26 UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus ... 122 2e-26 UniRef50_C8NZK8 DNA polymerase III (Alpha subunit) n=2 Tax=Erysi... 122 2e-26 UniRef50_B4S124 DNA polymerase III, epsilon subunit n=3 Tax=Prot... 122 2e-26 UniRef50_Q10384 Uncharacterized protein Rv2191/MT2247 n=25 Tax=A... 122 2e-26 UniRef50_C5CGL7 DNA polymerase III, alpha subunit n=2 Tax=Thermo... 122 2e-26 UniRef50_C7MCE6 Exonuclease, DNA polymerase III, epsilon subunit... 122 2e-26 UniRef50_A4BWD8 DNA polymerase III, epsilon subunit n=3 Tax=Flav... 122 3e-26 UniRef50_B8FYI4 DNA polymerase III, alpha subunit n=10 Tax=Clost... 122 3e-26 UniRef50_C7H779 DNA polymerase III, alpha subunit n=5 Tax=Clostr... 122 3e-26 UniRef50_C0W351 DNA polymerase III epsilon subunit n=1 Tax=Actin... 122 3e-26 UniRef50_D2MQ64 DNA polymerase III, alpha subunit, Gram-positive... 122 4e-26 UniRef50_A7BDG4 Putative uncharacterized protein n=1 Tax=Actinom... 122 4e-26 UniRef50_C4RQP7 DNA polymerase III, epsilon subunit n=1 Tax=Micr... 122 4e-26 UniRef50_B0P1Y1 Putative uncharacterized protein n=2 Tax=Clostri... 121 5e-26 UniRef50_A9KMW9 DNA polymerase III, alpha subunit n=28 Tax=Bacte... 121 5e-26 UniRef50_C4K987 DNA polymerase III, epsilon subunit n=1 Tax=Thau... 120 8e-26 UniRef50_Q1LGD6 DNA polymerase III, epsilon subunit n=5 Tax=cell... 120 8e-26 UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51... 120 9e-26 UniRef50_A9NEU3 DNA polymerase III alpha subunit n=1 Tax=Acholep... 120 1e-25 UniRef50_Q73L66 DNA polymerase III domain protein n=2 Tax=Trepon... 120 1e-25 UniRef50_A9AEP6 DNA polymerase III, epsilon subunit n=55 Tax=Bur... 120 1e-25 UniRef50_A9F4T5 DNA polymerase III, epsilon subunit n=1 Tax=Sora... 120 1e-25 UniRef50_C5B5Z3 Protein with DNA-directed DNA polymerase-like do... 120 1e-25 UniRef50_Q5P3L6 Nuclease subunit Cho of the excinuclease complex... 120 2e-25 UniRef50_A7A526 Putative uncharacterized protein n=1 Tax=Bifidob... 120 2e-25 UniRef50_D0WQL3 Putative DNA polymerase III, epsilon subunit n=1... 119 2e-25 UniRef50_B1MY77 Rad3-related DNA helicase n=3 Tax=Leuconostoc Re... 118 3e-25 UniRef50_Q315G7 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 118 3e-25 UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Acti... 118 3e-25 UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Prot... 118 4e-25 UniRef50_O67074 DNA polymerase III subunit epsilon n=3 Tax=Aquif... 118 5e-25 UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cyto... 118 5e-25 UniRef50_UPI00019768DE DNA polymerase III alpha subunit n=1 Tax=... 118 5e-25 UniRef50_C6D2T0 DNA polymerase III, alpha subunit n=2 Tax=Paenib... 118 5e-25 UniRef50_UPI0001B9EC75 DnaQ family exonuclease/DinG family helic... 118 6e-25 UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus ... 118 6e-25 UniRef50_A4YW65 Putative uncharacterized protein n=2 Tax=Bradyrh... 118 6e-25 UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacteri... 117 7e-25 UniRef50_D0WFC5 DNA polymerase III, alpha chain n=1 Tax=Slackia ... 117 8e-25 UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit ... 117 9e-25 UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chlo... 117 1e-24 UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured ca... 117 1e-24 UniRef50_D1BFZ9 Exonuclease, DNA polymerase III, epsilon subunit... 116 1e-24 UniRef50_D0WQJ6 Exonuclease, DNA polymerase III, epsilon subunit... 116 1e-24 UniRef50_O68045 DNA polymerase III subunit epsilon-like protein ... 116 2e-24 UniRef50_Q1MZX4 Putative uncharacterized protein n=1 Tax=Bermane... 116 2e-24 UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus... 116 2e-24 UniRef50_C1DBV5 Probable DNA-directed DNA polymerase III n=1 Tax... 116 2e-24 UniRef50_C6A933 DNA polymerase III alpha subunit n=4 Tax=Bifidob... 116 2e-24 UniRef50_A0PN08 DNA polymerase n=1 Tax=Mycobacterium ulcerans Ag... 116 2e-24 UniRef50_D0MIT4 Putative sensor with HAMP domain n=1 Tax=Rhodoth... 115 3e-24 UniRef50_Q16B76 Exonuclease, putative n=3 Tax=Roseobacter RepID=... 115 3e-24 UniRef50_C7G8J4 Putative DNA polymerase III, alpha chain n=1 Tax... 115 3e-24 UniRef50_Q600A7 DNA polymerase III, alpha chain n=4 Tax=Mycoplas... 115 3e-24 UniRef50_D2L4P4 DNA polymerase III, epsilon subunit n=1 Tax=Desu... 115 3e-24 >UniRef50_P04995 Exodeoxyribonuclease I n=282 Tax=Bacteria RepID=EX1_ECOLI Length = 475 Score = 572 bits (1474), Expect = e-162, Method: Composition-based stats. Identities = 467/467 (100%), Positives = 467/467 (100%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ Sbjct: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF Sbjct: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA Sbjct: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR Sbjct: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 Query: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL Sbjct: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 Query: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS Sbjct: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 Query: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD Sbjct: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD 420 Query: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL Sbjct: 421 YAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 >UniRef50_B0BNV2 Exonuclease I n=17 Tax=Gammaproteobacteria RepID=B0BNV2_ACTPJ Length = 514 Score = 542 bits (1397), Expect = e-152, Method: Composition-based stats. Identities = 259/465 (55%), Positives = 343/465 (73%), Gaps = 3/465 (0%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 + TF F+DYE+FG PALDRPAQFA IRTDS+FN+IGEP +FYCK DYLP P AV Sbjct: 1 MNKNLTFFFYDYESFGVSPALDRPAQFAGIRTDSDFNIIGEPVMFYCKQTPDYLPSPEAV 60 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 ++TGITPQ+ A+G E FAARIH+ F+ P TCILGYNN+R+DDE+TR F+RNF+DPY Sbjct: 61 MVTGITPQQCNAEGVPEPEFAARIHAEFSQPNTCILGYNNIRYDDEMTRYTFFRNFFDPY 120 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 +SW++ NSRWDLLD++RACYALRP+GI W +++G+P+F+LE+LTKANGI H NAHDAM Sbjct: 121 EYSWKNGNSRWDLLDLVRACYALRPDGIEWVIDENGMPNFKLENLTKANGIAHENAHDAM 180 Query: 185 ADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTS 244 ADVYATIAMAKL+K +QP+LF + F +R K ++ +ID +M PLVHVSGMFG R NT+ Sbjct: 181 ADVYATIAMAKLIKQKQPKLFQFFFENRGKKEIEKMIDTGEMTPLVHVSGMFGNARANTA 240 Query: 245 WVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA-AVPVKLVHI 303 W+AP+AWHP N+N V+ DL+GD+S LL ++ LR RLYT K +L + VP+K VHI Sbjct: 241 WIAPIAWHPTNQNQVLCCDLSGDVSALLTDSAEELRTRLYTKKEELAEGVAPVPLKGVHI 300 Query: 304 NKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQV-REKVVAIFAEAEPFTPSDN 362 N+CP++A A L PE+A RLGI+R+ CL+NLK+L+ N + REKV IF E F PS N Sbjct: 301 NRCPIIAPAKVLLPENAARLGIDRERCLENLKLLKANKSLVREKVTEIFMEERSFEPSAN 360 Query: 363 VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 422 V+ LY+GFFS AD+ M I+ P+ L + F D+R+E LLF+YRAR++P TL A Sbjct: 361 VETTLYDGFFSPADKNNMAILRTLPPQELAHHGLQFADERVEALLFHYRARHYPETLSRA 420 Query: 423 EQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 EQ +W ++ Q + + +A+ + +L Q + D+ EKV LL+ L Sbjct: 421 EQIKWQKYCHQQIDAKSV-QFAEAIDILFQIHHDNPEKVKLLENL 464 >UniRef50_Q483M2 Exodeoxyribonuclease I n=21 Tax=Gammaproteobacteria RepID=Q483M2_COLP3 Length = 487 Score = 520 bits (1339), Expect = e-146, Method: Composition-based stats. Identities = 244/475 (51%), Positives = 332/475 (69%), Gaps = 10/475 (2%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 62 + +Q + L+HDYET+G +P D+P+QFA IRTD + N+IGEPE+FYC P DYLP P Sbjct: 7 QNNTEQPSILWHDYETWGINPKFDKPSQFAGIRTDLDLNIIGEPEMFYCTPPVDYLPHPE 66 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 A L+TGITPQ+A+ +G +EA FAARIH+LFT P TC+ GYN++RFDDEVTR + YRNFYD Sbjct: 67 ACLVTGITPQKAQREGLSEAEFAARIHTLFTQPNTCVAGYNSIRFDDEVTRYLLYRNFYD 126 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWP---ENDDGLPSFRLEHLTKANGIEHSN 179 PYA WQ+ NSRWD++D++RACYALRPEGINWP + + + SFRLE LT AN I H Sbjct: 127 PYAREWQNGNSRWDIIDMVRACYALRPEGINWPTVKRDGEEVISFRLELLTAANDISHEA 186 Query: 180 AHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAW 239 AHDAM+DVYATIAMAKL+K +QP+L+D++F +NK+++ LI+ +M P+VH S + Sbjct: 187 AHDAMSDVYATIAMAKLIKEKQPKLYDFIFNLKNKNQVKDLINTAEMTPIVHTSSKVSSA 246 Query: 240 RGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDL-GDNAAVPV 298 G TSW AP+++HP N+NAVI VDLA DISPLL L S+ ++ RLYT DL D +PV Sbjct: 247 HGCTSWFAPVSYHPVNKNAVICVDLARDISPLLTLSSEEIKARLYTRYDDLAPDELPIPV 306 Query: 299 KLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFT 358 KL+H+NKCPV+A A TL PE+A+RL I R CLDNL +LR++ ++R+K+ +FA ++ Sbjct: 307 KLIHVNKCPVIAPAKTLLPENAERLAIPRDVCLDNLALLRKHAELRDKLSDVFATSDFDN 366 Query: 359 PSDNVDAQLYNG-FFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPG 417 + + LY G FFS +D+A M I+ P L F D+R+ LLF YRARN+P Sbjct: 367 DDVDAEQALYGGSFFSHSDKAQMDILRGLSPEQLANHPFQFQDERLSVLLFRYRARNYPY 426 Query: 418 TLDYAEQQRWLEHRRQVFTPE-----FLQGYADELQMLVQQYADDKEKVALLKAL 467 TL EQQ+W ++ + L + +++ L ++ DK K+++LKAL Sbjct: 427 TLSTEEQQKWQQYCQNKLQYGGKGILSLDEFMMKIENLAHEHETDKAKMSVLKAL 481 >UniRef50_Q605A2 Exodeoxyribonuclease I n=1 Tax=Methylococcus capsulatus RepID=Q605A2_METCA Length = 478 Score = 516 bits (1329), Expect = e-145, Method: Composition-based stats. Identities = 207/466 (44%), Positives = 275/466 (59%), Gaps = 8/466 (1%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 +F ++D ETFGT PA DR AQFA +RTD EFN IG P+V YC+P+DD +P P A L+TG Sbjct: 5 PSFYWYDLETFGTDPARDRIAQFAGLRTDLEFNPIGPPDVLYCRPSDDMVPYPDACLVTG 64 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 ITPQ A G E+AF A IH +F P TC+LGYN +RFDDE+ R+ FYRN YDPYA W Sbjct: 65 ITPQYAAELGVPESAFIATIHRIFMRPGTCVLGYNTLRFDDEMLRHAFYRNLYDPYAREW 124 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 + NSRWD++D+ R ALRP+GI WP + G P F+LE L ANGI H +AHDA++DV Sbjct: 125 KGGNSRWDVIDLARLTQALRPDGIEWPRDSLGSPVFKLERLAAANGIRHESAHDALSDVR 184 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 AT+A A+L+ RQPRLF + R K + L+ + +P++HVS F A R + V P Sbjct: 185 ATVAFARLIAERQPRLFQFALESRAKGAVERLLALGAWQPVLHVSEKFSASRHCIACVLP 244 Query: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA-AVPVKLVHINKCP 307 L HP VI+ DLA D + L +L D +R RL+T +L +P+K VH N+CP Sbjct: 245 LCRHPRIATRVIVFDLASDPAQLSDLSVDEIRRRLFTPSAELPAATGRLPLKGVHTNRCP 304 Query: 308 VLAQANTLRPEDADRLGINRQHCLDNLKILREN-PQVREKVVAIFAEAEPFTPSDNVDAQ 366 V+ + LRP D +RLGI+ C + L+++ + K+ A F F + + + Sbjct: 305 VVVPMSALRPADGERLGIDAVLCRRRARWLQDHAEDIIPKISAAFEVDASFEAASDPELM 364 Query: 367 LY-NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQ 425 LY GF DADR A+ V P L FVD R ++LLF +RARNFP TL+ E++ Sbjct: 365 LYRGGFIPDADRRALDQVHRLTPDQLAHYRPRFVDGRFDELLFRFRARNFPETLNAEERE 424 Query: 426 RWLEHRRQVF----TPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 RW RR L + + L Q D K A+L AL Sbjct: 425 RWTAFRRARLAGIGGGLSLAEFFSRIDRLRSQ-ESDAGKRAILDAL 469 >UniRef50_C6XFI1 Exonuclease I n=1 Tax=Candidatus Liberibacter asiaticus str. psy62 RepID=C6XFI1_LIBAP Length = 471 Score = 511 bits (1316), Expect = e-143, Method: Composition-based stats. Identities = 241/457 (52%), Positives = 322/457 (70%), Gaps = 1/457 (0%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F+ +DYETFG ALDRPAQFA +R D ++ I EVF+CKPADDYLP P AV ITGIT Sbjct: 5 FVIYDYETFGRDVALDRPAQFAGVRVDRQWEKIESTEVFFCKPADDYLPDPEAVFITGIT 64 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 PQ+A G EA F+ RIH F+VP TCI+GYNN+RFDD +RNIFYRNFYD Y WSW + Sbjct: 65 PQKALRDGVVEAEFSRRIHQFFSVPNTCIIGYNNIRFDDYYSRNIFYRNFYDSYRWSWDN 124 Query: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190 NSRWDLLDVMRA YA P+GI WP DDG SF+L+ L ANGIEH NAHDA ADVYAT Sbjct: 125 GNSRWDLLDVMRAIYAFSPDGIQWPSRDDGATSFKLQDLALANGIEHVNAHDAKADVYAT 184 Query: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLA 250 +A+ L++ ++P+LF+YL+ +RNK++L LID+ M PLVHVSGMFGA R NT+ +AP+A Sbjct: 185 LALVWLIREKKPKLFEYLYDYRNKNQLRKLIDIQNMTPLVHVSGMFGASRSNTALIAPVA 244 Query: 251 WHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLA 310 WHP +++VI +L+GD+ +LDS L +RL+T+ +L VP+K VH+NKCP+L Sbjct: 245 WHPRYKDSVIGCNLSGDMRVFQDLDSVQLAKRLFTSHDELKGLVPVPIKEVHLNKCPILM 304 Query: 311 QANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNG 370 + + E +R GI+ + CL+NL +LR+ +R++ AI+ + + S +VD+QLY+G Sbjct: 305 PIDYCKKEHFERWGIDHKRCLENLTLLRQQTNLRDRFKAIYNKPYTSS-SQDVDSQLYDG 363 Query: 371 FFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEH 430 FF+D DR M +L T P L L++ F D+R+ +L F YRARNFP TL E+Q WLEH Sbjct: 364 FFADVDRQIMDRILRTAPEQLSTLNLPFSDRRLPELFFRYRARNFPHTLSEKEKQDWLEH 423 Query: 431 RRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 R+++ T ++ Y ++LQ L +Y D+ K L+ AL Sbjct: 424 RKKMLTRSRIEEYKNKLQSLSGEYKGDEGKEGLINAL 460 >UniRef50_Q1QT40 Exodeoxyribonuclease I subunit C n=10 Tax=Proteobacteria RepID=Q1QT40_CHRSD Length = 495 Score = 510 bits (1314), Expect = e-143, Method: Composition-based stats. Identities = 234/483 (48%), Positives = 308/483 (63%), Gaps = 19/483 (3%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 M GK + TFL+HDYETFG P DRPAQFAAIRTDS+FN +GEP FYCKPADD+LP P Sbjct: 1 MAQGKTEPTFLWHDYETFGADPRRDRPAQFAAIRTDSDFNPVGEPMTFYCKPADDFLPHP 60 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 A LITGITPQ AR +G E FAARIH+ +VP TC LGYN +RFDDEV+R++FYRNF Sbjct: 61 QACLITGITPQAARRRGLAEIEFAARIHAEMSVPGTCSLGYNTLRFDDEVSRHLFYRNFI 120 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 DPY+ WQ+ NSRWDL+DV+R +ALRP+GI WP +DG PSFRLE LT ANGIEH+ AH Sbjct: 121 DPYSREWQNGNSRWDLIDVVRTYHALRPDGIEWPTREDGAPSFRLEDLTAANGIEHAGAH 180 Query: 182 DAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG 241 DA+ADV ATI +A+L+K R +LF+YL R+K + ++D+ KP++HVS + A RG Sbjct: 181 DALADVRATIELARLLKARNAQLFEYLLKLRDKRTVARMLDIQARKPMLHVSRRYPASRG 240 Query: 242 NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA-AVPVKL 300 ++ V PLA HP N N VI+ DL+ D SPLL +++ +RER++ + +L + +P+K+ Sbjct: 241 CSALVVPLAEHPSNPNGVIVYDLSVDPSPLLSMEAAQIRERVFASADELAEGEARIPLKV 300 Query: 301 VHINKCPVLAQANTLRPED----------ADRLGINRQHCLDNLKILRENPQVREKVVAI 350 +HINK PV+ A +L+ D RLG++ C + K L+ P V K + Sbjct: 301 IHINKSPVIMPAASLKDVDGPQRGEYGALVARLGLDMAACRRHWKQLQAAPDVAAKAAEV 360 Query: 351 FAEAEPFTPSDNVDAQLY-NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFN 409 FAE P P + D LY GFFS ADR M+ E +L F D R+E++LF Sbjct: 361 FAEG-PGAPPSDPDLMLYSGGFFSPADRREMQRAREMPAWDLAEASFAFQDPRLEEMLFR 419 Query: 410 YRARNFPGTLDYAEQQRWLEHRRQVFTPE-----FLQGYADELQMLVQQYADDKEKVALL 464 RARN+P TL EQ +W +R L G+A E++ L Q D + +L Sbjct: 420 LRARNYPDTLSSEEQAQWEAYRWARMNDAEVASLTLTGFAREIERLNQV-PLDDAQRQVL 478 Query: 465 KAL 467 + L Sbjct: 479 EEL 481 >UniRef50_A6VXX3 Exodeoxyribonuclease I n=4 Tax=Oceanospirillales RepID=A6VXX3_MARMS Length = 484 Score = 508 bits (1307), Expect = e-142, Method: Composition-based stats. Identities = 201/471 (42%), Positives = 291/471 (61%), Gaps = 9/471 (1%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 ++F + D+ET GT PA DRP QFA IRTD +FN IGEP +FYC+ A+D LPQP A Sbjct: 3 SSGPTSFFWFDFETTGTDPARDRPMQFAGIRTDLDFNPIGEPIMFYCRLAEDVLPQPEAC 62 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 L+TGI+PQ+A +G EA F + + + P TC LGYN +RFDDEV R FYRNF DPY Sbjct: 63 LLTGISPQDANREGLCEAEFMQAVEAELSQPGTCALGYNTIRFDDEVVRYGFYRNFIDPY 122 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 WQ++ SRWD++D++R YA+RPEGI WP+N+DG S +LE LTKANGI H AHDA+ Sbjct: 123 TREWQNNCSRWDMIDLVRMTYAMRPEGIVWPKNEDGQVSMKLEALTKANGIAHEQAHDAL 182 Query: 185 ADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTS 244 +DVY TI +AKL++++QP+LF Y F R KH+L IDV ++KP +H+SGMFG + + Sbjct: 183 SDVYGTIEIAKLIRSKQPKLFAYYFKMRQKHELQQFIDVVRLKPFLHISGMFGQAKNYAA 242 Query: 245 WVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHIN 304 +V P+A HP N+N VI+ DL D PL++L + +R R++T + +LGD +P+K++H N Sbjct: 243 FVVPIAPHPTNKNGVIIFDLMADAQPLIDLSVEEIRHRVFTRQEELGDLERLPLKVIHYN 302 Query: 305 KCPVLAQANTLRPED-ADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNV 363 K P +A A L+ D RL ++ C NL I++ + + K+ +F + + + Sbjct: 303 KSPAVAPATFLKDVDVVKRLALDGSVCRHNLAIIKGHAGLAAKLSDVFMQEDRPIH-KDP 361 Query: 364 DAQLY-NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYA 422 D LY GFFS DR M+ + T L L ++F D+R+ ++L Y RN+P L Sbjct: 362 DVMLYSGGFFSREDRVRMEKIRSTPANQLSELAMSFDDRRLPEMLMRYIGRNYPDQLSEQ 421 Query: 423 EQQRWLEHRRQVF------TPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 +Q W E+R+ ++ Y + L ++ Q + +L+ L Sbjct: 422 QQFEWEEYRQVRLLEKDGGGSINMEQYFERLNLIAQTPDLSPAEQVMLQDL 472 >UniRef50_Q4K7B4 Exodeoxyribonuclease I n=25 Tax=Pseudomonas RepID=Q4K7B4_PSEF5 Length = 497 Score = 504 bits (1299), Expect = e-141, Method: Composition-based stats. Identities = 218/471 (46%), Positives = 294/471 (62%), Gaps = 14/471 (2%) Query: 4 DGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 63 + ++ ++DYET G +P DRP Q A IRTD N I EP YC+P+DD LP P A Sbjct: 19 QEQAVTSLFWYDYETTGINPRCDRPLQVAGIRTDLALNEIDEPVNLYCQPSDDILPHPMA 78 Query: 64 VLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 +ITGITP +G EA F R+H P TC +GYN +RFDDE+TR YRNF+DP Sbjct: 79 CMITGITPGRLAEQGLGEADFMTRVHEQLARPGTCGVGYNTLRFDDEMTRYSLYRNFFDP 138 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDA 183 YA WQ NSRWDL+DV+R YALRP+GI WPE + G S +LE LT ANGI+H AHDA Sbjct: 139 YAREWQGGNSRWDLIDVVRTAYALRPQGIVWPE-EQGQVSLKLERLTAANGIDHGQAHDA 197 Query: 184 MADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNT 243 ++DV ATIA+A+LV+ +QPRL+D+LF R+K ++M + + ++P+VH+SG F A R Sbjct: 198 LSDVRATIALARLVRDKQPRLYDWLFQLRSKQRVMDQVRL--LQPMVHISGRFSAARHYI 255 Query: 244 SWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA-AVPVKLVH 302 V PLAWHP NRNA+I+ DL D LLELD++TLR+RLYT + DL + VP+KL+H Sbjct: 256 GVVLPLAWHPRNRNALIVCDLHLDPQGLLELDAETLRQRLYTRREDLLEGELPVPLKLIH 315 Query: 303 INKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQV-REKVVAIFAEAEPFTPSD 361 IN+CPV+A + LR ED RL ++ + L E +V R+K+ I+ + F SD Sbjct: 316 INRCPVVAPLSVLRSEDQQRLHLDMELYQRRAVALSEAQEVWRDKLSVIYG-PDEFAASD 374 Query: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421 + + QLY+GF D DR + V E +P +L F D+R+ +LLF YRARNFP TL+ Sbjct: 375 DPEQQLYDGFIGDRDRRLCEQVREADPLHLAQQQWPFDDERLPELLFRYRARNFPETLNK 434 Query: 422 AEQQRWLEHRRQVF------TPEFLQGYADELQMLVQQYADDKEKVALLKA 466 AEQ+RWL +Q P L+ + L+ + D + +L Sbjct: 435 AEQERWLVFCQQRLLDPQLGAPNTLESFRQGLEQSLLSA--DPMQRQVLDQ 483 >UniRef50_C1DSN1 Exodeoxyribonuclease I n=1 Tax=Azotobacter vinelandii DJ RepID=C1DSN1_AZOVD Length = 476 Score = 504 bits (1298), Expect = e-141, Method: Composition-based stats. Identities = 220/459 (47%), Positives = 298/459 (64%), Gaps = 12/459 (2%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 S+ ++DYET G +P DRP Q A IRTD N IG P YC+PADD LP P A L+ Sbjct: 1 MTSSIFWYDYETTGINPRCDRPLQVAGIRTDEALNEIGAPLNLYCRPADDILPHPAACLV 60 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 TGITP+ +G EA F R+H+ +P TC GYN++RFDDE++R+ YRNF+DPYA Sbjct: 61 TGITPRLLAERGLCEAEFVTRLHAELALPGTCTAGYNSLRFDDEISRHALYRNFFDPYAR 120 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 WQ NSRWDL+D++R YALRPEGI+WP+ ++G S RLE LT ANGIEH AHDA+AD Sbjct: 121 EWQAGNSRWDLIDLLRTAYALRPEGIHWPQ-EEGRVSLRLERLTAANGIEHGQAHDALAD 179 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWV 246 V ATIA+A+L++ RQP+L+ YL+ R+K +++ I + ++PLVHVSG F A RG + V Sbjct: 180 VRATIALARLLRERQPKLYGYLYQLRSKQRVLDQIRL--LRPLVHVSGRFAAERGYLAVV 237 Query: 247 APLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA-AVPVKLVHINK 305 PLAWHP NRNA+I+ DL D SPLL+LD++ LR RLY + +L DN VP+KLVHIN+ Sbjct: 238 LPLAWHPSNRNALIVCDLQADPSPLLDLDAEILRRRLYMRREELADNESPVPLKLVHINR 297 Query: 306 CPVLAQANTLRPEDADRLGINRQHCLDNLKILRENP-QVREKVVAIFAEAEPFTPSDNVD 364 CPVLA + LR ED RL ++ C +++L Q +EK+ I+ + F S++ + Sbjct: 298 CPVLAPLSVLREEDIGRLRVDMAECQRRVELLCAAQGQWQEKLARIYM-GDEFPASEDPE 356 Query: 365 AQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQ 424 QLY GFF + DR + V EP +L + F D+R+ +LLF YRARNFP TL AE Sbjct: 357 QQLYGGFFGERDRRLCEQVRRAEPESLGRQNWGFDDERLPELLFRYRARNFPETLTAAEG 416 Query: 425 QRWLEHRRQVFTPE------FLQGYADELQMLVQQYADD 457 + W E R+ + L + +L+ L+ Q ++ Sbjct: 417 ECWQEFCRRRLSDAAWGAPCTLGDFNVQLEQLLAQADEE 455 >UniRef50_Q0AEW3 Exodeoxyribonuclease I subunit C n=2 Tax=Nitrosomonas RepID=Q0AEW3_NITEC Length = 486 Score = 500 bits (1287), Expect = e-140, Method: Composition-based stats. Identities = 208/467 (44%), Positives = 286/467 (61%), Gaps = 9/467 (1%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 ST +HDYET G +P DRP QFA +RTD N IG+P V YCKPA D LP P A L+T Sbjct: 5 TSTLYWHDYETSGANPRQDRPVQFAGLRTDEALNEIGDPLVIYCKPARDRLPHPEACLLT 64 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 GITPQ A +G E F A IH+ P TC +GYN +RFDDEVTR YRNFYDPYA Sbjct: 65 GITPQMAATRGLPEPEFIALIHAQLAQPGTCGVGYNTLRFDDEVTRFALYRNFYDPYARE 124 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 WQ NSRWD++D+ R +ALRPEGINWP N +G PSFRLE +T ANG+ H +AHDA++DV Sbjct: 125 WQSGNSRWDVIDLARMTFALRPEGINWPVNGEGKPSFRLEDITAANGLMHDSAHDALSDV 184 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 247 ATIA+A+L++ RQPRL+D+LF R+K + L+D+ P++H S M+ + +G T+ V Sbjct: 185 RATIALARLLRDRQPRLYDWLFRLRDKREASHLLDLTAHTPVLHTSRMYPSEQGCTTLVM 244 Query: 248 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDN-AAVPVKLVHINKC 306 PL N N++++ DL D + ++L+ D L ERL+T K +L + +PVK + +NKC Sbjct: 245 PLLPETGNTNSILVYDLRHDPAEFMQLNVDALVERLFTPKLELAEGQQRLPVKTIRLNKC 304 Query: 307 PVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQ 366 P LA L E A R+G+N + C + ++L ++P +++ ++ + F P ++ D Sbjct: 305 PALAPQKVLNDEIAKRIGLNDEQCQQHWQLLLQHPDFMQRIRQAYSNGKIF-PENDADLA 363 Query: 367 LYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQR 426 LY+GF +D DR +V ++EP L L F D R +LLF YRARNFP TL E+ R Sbjct: 364 LYDGFANDHDRNLFPLVRDSEPERLIDLSEEFQDGRYAELLFRYRARNFPDTLSAQEKHR 423 Query: 427 WLEHRRQVFTPE------FLQGYADELQMLVQQYADDKEKVALLKAL 467 W H R+ + L Y +L L + + +L L Sbjct: 424 WQVHCRRQLGEDAINGSLTLNKYRQKLIQLRTDCPQ-QAQQEILNEL 469 >UniRef50_A3WL65 Exonuclease I n=2 Tax=Idiomarina RepID=A3WL65_9GAMM Length = 486 Score = 496 bits (1276), Expect = e-138, Method: Composition-based stats. Identities = 216/476 (45%), Positives = 303/476 (63%), Gaps = 9/476 (1%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 + + K Q TF +HDYET+G P +DRPAQFA +RT +F +G P Y +P D+LP Sbjct: 4 VPENNKNQPTFYWHDYETWGARPLIDRPAQFAGMRTTLDFQPVGRPLTIYAQPTPDFLPD 63 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 P AVLITGITPQ A +G NEA FA I + P T I+GYNN+RFDDEVTR++ YRNF Sbjct: 64 PEAVLITGITPQYALNQGVNEANFAQAIVQEMSQPNTIIIGYNNIRFDDEVTRSLCYRNF 123 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 YDPYA +WQ+ NSRWDL+DV+RACYALRPEGI+WPE++DG + RLE LT+AN I+H A Sbjct: 124 YDPYAHTWQNGNSRWDLIDVVRACYALRPEGIHWPEDEDGRVTLRLEKLTQANRIDHGQA 183 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 HDAM+DV ATIAMA+L+ +QP+L+ + HR+K+ LM LI+ Q+KPLVHVSG++GA Sbjct: 184 HDAMSDVRATIAMAQLLAEKQPKLWQFALQHRHKNDLMNLINWQQIKPLVHVSGLYGADN 243 Query: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDN--AAVPV 298 S V P+ +H + NA+I DL + + + ++ LR+ L+ ++ N Sbjct: 244 FFVSAVLPIGFHAQRANALIAWDLRINPADFADYSTEQLRDLLFASRQQHETNGTQRPGA 303 Query: 299 KLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIF--AEAEP 356 + +N+CP LA TL E R I+ + + L EN R++++AIF A Sbjct: 304 TQITLNRCPFLAPLATLTAEAQQRTQIDLATLRERTRWLAENSDFRDRIMAIFDSALEHG 363 Query: 357 FTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFP 416 P +VD +LY+GFF D+ ++++ P L +++ D R+ +LLF YRARN+P Sbjct: 364 EQPPLDVDQRLYDGFFDAQDKQNLQMIRAMRPEQLAGIELNTQDNRLPELLFRYRARNYP 423 Query: 417 GTLDYAEQQRWLEHRRQVFTPEF-----LQGYADELQMLVQQYADDKEKVALLKAL 467 TLD +E QRW + RQ T + +A++L+ L QQY D+K ++ LLK+L Sbjct: 424 ATLDQSELQRWQQFCRQRLTEPTNGQLSITEFAEKLEGLAQQYQDNKHRMQLLKSL 479 >UniRef50_D2UDX2 Putative exodeoxyribonucleaseIprotein n=1 Tax=Xanthomonas albilineans RepID=D2UDX2_XANAL Length = 492 Score = 494 bits (1273), Expect = e-138, Method: Composition-based stats. Identities = 212/474 (44%), Positives = 287/474 (60%), Gaps = 9/474 (1%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 +D +FLF+D ETFG P R AQFAA+RTD+ N I EP F+ +PADD LP P Sbjct: 9 HHDATMPDSFLFYDLETFGADPRRTRIAQFAAVRTDAALNQIEEPISFFVQPADDLLPSP 68 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 A LITGITPQ+A +G NEA ARI P+TC LGYN++RFDDE R+ +RNF+ Sbjct: 69 VATLITGITPQQALREGINEADAFARIAEQMAQPQTCTLGYNSLRFDDEFIRHGLFRNFH 128 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 DPY W+ NSRWDLLD++R +ALRP+GI WP+ +DG SF+LE L ANG+ +AH Sbjct: 129 DPYEREWRGGNSRWDLLDMLRLMHALRPDGIVWPQREDGATSFKLEQLALANGVRDGDAH 188 Query: 182 DAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG 241 +A++DVYATI MA+ + QPRL++Y R+K +L+DV M+P++HVS + A R Sbjct: 189 EALSDVYATIGMARHFRRCQPRLWEYALKLRDKRFCASLLDVTAMQPVLHVSMRYPASRL 248 Query: 242 NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA-AVPVKL 300 + V PL HP + V++ DL GDI+ LL + + +RLYT + DL + + +K Sbjct: 249 CAAPVLPLTRHPRIDSRVVVFDLEGDINTLLRCTPEEIADRLYTPQADLPEGEQRIALKE 308 Query: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILREN-PQVREKVVAIFAEAEPFTP 359 VH+NK P L LR + +RLGI+ L +RE P + EKV +FA P Sbjct: 309 VHLNKAPALVAWAHLREAEFERLGIDPAQALAKAARMREAGPTLAEKVRRVFASERATMP 368 Query: 360 SDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTL 419 + +VDA LY+GF +D D+ AM V T P L L+ F D R+ +LLF YRARN+P TL Sbjct: 369 A-DVDASLYDGFLADTDKRAMAQVRATAPMQLAPLEHGFRDPRLPELLFRYRARNWPQTL 427 Query: 420 DYAEQQRWLEHRRQV------FTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 AEQ RW ++RR+ + + YA +L L + +D K ALL L Sbjct: 428 SIAEQTRWDDYRRRRLEVDNGLSELTFETYAAQLADLRLAHPEDATKQALLDQL 481 >UniRef50_Q21I25 Exodeoxyribonuclease I subunit C n=2 Tax=Gammaproteobacteria RepID=Q21I25_SACD2 Length = 485 Score = 493 bits (1269), Expect = e-138, Method: Composition-based stats. Identities = 205/469 (43%), Positives = 287/469 (61%), Gaps = 11/469 (2%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 Q TF +HDYET+G +PA+DRP+QFA +RTD + N+IGEP V YCKP +D P P A L+ Sbjct: 1 MQKTFYWHDYETWGANPAVDRPSQFAGVRTDMDLNIIGEPLVIYCKPPEDIWPNPEACLV 60 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 TG+TPQE AKG E F +IH P TC +GYN++RFDDEVTR YRN++DPY Sbjct: 61 TGLTPQETLAKGVTEREFIKQIHRELAKPGTCGVGYNSIRFDDEVTRYTLYRNYFDPYER 120 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 W++ NSRWD++D++R CYALRPEGI WP DG PSFRLE+LTK NGI H++AHDA +D Sbjct: 121 EWRNGNSRWDIIDMVRLCYALRPEGIEWPVV-DGKPSFRLENLTKVNGIVHASAHDAYSD 179 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWV 246 V ATI +A+LV+ +QP L++++ +R K + L+DV KP++H+S F + G + Sbjct: 180 VEATIKLARLVREKQPALYEHVVNNRGKREATKLLDVASKKPMLHISSKFSSENGCAGLI 239 Query: 247 APLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDN-AAVPVKLVHINK 305 APLA+HP N+NAVI+++L D PL +L +D +R R++TA DL + +PVKL+H+NK Sbjct: 240 APLAYHPVNKNAVIVINLNADPKPLFDLSADEIRARIFTATKDLPEGVERLPVKLIHLNK 299 Query: 306 CPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDA 365 CP+L L + RLGI++ C + L + + EK+ +FA F S + + Sbjct: 300 CPILLTPKILDEQAQARLGIDKAQCEKHWSQL-QRMDITEKLQQVFA-TNEFEGSLDPER 357 Query: 366 QLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQ 425 LY+GF D D+ M V + L + F DKR+ +L Y+ARNFP L +E+ Sbjct: 358 MLYDGFVGDTDKYVMADVRKANGAELSKHNFVFSDKRLNDMLLRYKARNFPDDLTDSERA 417 Query: 426 RWLEHRRQVFTPE-----FLQGYADELQMLVQ--QYADDKEKVALLKAL 467 W E Q L D+L + + D+ + K L Sbjct: 418 EWREFVSQRLKDGGDGVLSLSELNDKLVNIRAELEQQQDQSPEQIAKKL 466 >UniRef50_B3PLL7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacteria RepID=B3PLL7_CELJU Length = 497 Score = 492 bits (1267), Expect = e-137, Method: Composition-based stats. Identities = 224/481 (46%), Positives = 297/481 (61%), Gaps = 19/481 (3%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 +Q T +HDYET+G PA+DRP QFA +RTD + N++GEP Y +PA D LP+P A Sbjct: 3 STEQITLYWHDYETWGESPAIDRPVQFAGVRTDLDLNILGEPLTIYARPAPDVLPKPEAC 62 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 LITGITPQEA AKG +EA F A IH P TC +GYN++RFDDEVTR YRNFYDPY Sbjct: 63 LITGITPQEAEAKGVSEADFIAAIHRELARPGTCGVGYNSIRFDDEVTRYTLYRNFYDPY 122 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 W++ NSRWDL+DV+R ALRPEGI+WP+ +DG P F+LE LT+ N I H AHDA+ Sbjct: 123 EREWRNGNSRWDLIDVLRMTRALRPEGIHWPDYEDGTPCFKLERLTEVNRISHEAAHDAL 182 Query: 185 ADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTS 244 +DV+ATIAMA+L+K+RQP+L+DY F R+K +LID+ KPL+H+S F +GN + Sbjct: 183 SDVHATIAMARLLKSRQPKLYDYAFRLRDKRFAASLIDIDGQKPLLHISSRFPGQQGNAA 242 Query: 245 WVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDN-AAVPVKLVHI 303 V PLA+HP N+N+VI +LA D SPLL L D LR RL+TA DL + +P+K +H+ Sbjct: 243 LVLPLAYHPANKNSVIAFNLAFDPSPLLNLPVDELRIRLFTASADLPEGVERLPLKEIHL 302 Query: 304 NKCPVLAQANTLRPEDADRLGINRQHCLDNLK-----ILRENPQVREKVVAIFAEAEPFT 358 NK P+L + A RL ++ C +L+ E + EK+ +++ + FT Sbjct: 303 NKTPMLVTTAMVDETLARRLQLDMAICEQHLRAWTQLTRTEREALAEKLDELYSAQD-FT 361 Query: 359 PSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGT 418 + + QLY GFFSDAD+ M V P L + TF D R+ +LLF YRARNFP + Sbjct: 362 GRTDPEQQLYAGFFSDADKRLMSRVRTLSPDALAKTEWTFEDSRLPELLFRYRARNFPES 421 Query: 419 LDYAEQQRWLEHRRQVFTPEF------LQGYADELQMLVQ------QYADDKEKVALLKA 466 LD AEQQRW + T L + + L+ D +K +LK Sbjct: 422 LDPAEQQRWFDFCCGRLTRPDQGASLVLSDFRQRIHALLAGLDVQPPQPDPIKKRQILKQ 481 Query: 467 L 467 L Sbjct: 482 L 482 >UniRef50_Q2P315 Exodeoxyribonuclease I n=17 Tax=Xanthomonadaceae RepID=Q2P315_XANOM Length = 481 Score = 492 bits (1266), Expect = e-137, Method: Composition-based stats. Identities = 205/470 (43%), Positives = 284/470 (60%), Gaps = 9/470 (1%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 +FLF+D ETFG P R AQFAA+RTD++ VI EP F+ +PADD LP P A ++ Sbjct: 1 MPDSFLFYDLETFGQDPRRTRIAQFAAVRTDAQLRVIEEPISFFVQPADDLLPSPYATMV 60 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 T ITPQ A +G EA ARI + P+TC LGYN++RFDDE R +RNFYDPY Sbjct: 61 TAITPQHALREGVTEAEAFARIAEQMSRPQTCTLGYNSIRFDDEFVRCGLFRNFYDPYER 120 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 W+ NSRWDLLDV+R +ALRP+GI WP+ +DG SF+LEHL AN + +AH+A++D Sbjct: 121 EWRGGNSRWDLLDVLRMVHALRPDGIVWPQREDGATSFKLEHLASANDVREGDAHEALSD 180 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWV 246 VYATI MA+ + QP+L+DY R+K L+DV M+P++H+S + A R + V Sbjct: 181 VYATIGMARKFQQHQPKLWDYALRLRDKRFAATLLDVIAMQPVLHISQRYPASRLCAAAV 240 Query: 247 APLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA-AVPVKLVHINK 305 PL HP + VI+ DL GD LL L D + +RLY DL + +P+K VH+NK Sbjct: 241 LPLTRHPRIDSRVIVFDLEGDPDVLLRLSPDEIADRLYIRAADLPEGERRIPLKEVHLNK 300 Query: 306 CPVLAQANTLRPEDADRLGINRQHCLDNLKILRE-NPQVREKVVAIF-AEAEPFTPSDNV 363 P L LR D +RLG+++ L +RE P++ EKV ++ +E P +++ Sbjct: 301 SPALVAWQHLRAADFERLGVDQDAVLAKAARMRELGPELAEKVRQVYGSERAPAAATNDA 360 Query: 364 DAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAE 423 DA LY+GF ++ D+ + V + P L AL+ F D R+ +LLF YRARN+P TL + E Sbjct: 361 DASLYDGFLAEGDKRLLAQVRTSAPAELCALESRFRDPRLIELLFRYRARNWPQTLSFDE 420 Query: 424 QQRWLEHRRQVFTPE------FLQGYADELQMLVQQYADDKEKVALLKAL 467 Q+RW +RRQ + L+ Y ++ L + + DD K ALL L Sbjct: 421 QERWNAYRRQRLLEDRGLGEVTLEQYNAQIVDLRRAHPDDATKQALLDQL 470 >UniRef50_A4ADV7 Exodeoxyribonuclease I n=2 Tax=Gammaproteobacteria RepID=A4ADV7_9GAMM Length = 482 Score = 481 bits (1239), Expect = e-134, Method: Composition-based stats. Identities = 215/475 (45%), Positives = 284/475 (59%), Gaps = 14/475 (2%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 TF +HDYETFG PA DRP+QFA +RTD + N+IGEP V Y +P DY+P P A Sbjct: 1 MSSSETFYWHDYETFGVDPAYDRPSQFAGLRTDLDLNLIGEPLVIYAQPPRDYVPHPDAC 60 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 LITGITPQ A A+G EA F + I F P TC +GYN++RFDD VTR YRN DPY Sbjct: 61 LITGITPQTALAEGVVEAQFMSTILDEFMKPGTCAVGYNSLRFDDTVTRATLYRNLRDPY 120 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 A + SRWDL+DV+R YALRPEG+NWP DDGLPSFRLE L KANG+E AHDA+ Sbjct: 121 AREYGDGRSRWDLIDVVRTAYALRPEGLNWPTRDDGLPSFRLEDLCKANGLEQGQAHDAL 180 Query: 185 ADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTS 244 DV ATIA+A+ +K +QPRLFD+LF R K + L+D P +P++HVSGMFGA R N Sbjct: 181 VDVKATIALARAIKDKQPRLFDWLFRQRFKQAVKPLLD-PMAQPVLHVSGMFGARRANLG 239 Query: 245 WVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA-AVPVKLVHI 303 + PLA H +NRN VI DL+ D + +++L ++ L RLYT+ DLG+ +K VHI Sbjct: 240 LILPLAVHYQNRNEVICADLSVDAALIIDLPAEELHRRLYTSNADLGEGEVRPGIKSVHI 299 Query: 304 NKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQ-----VREKVVAIFAEAEPFT 358 N+CPVL A+R G++ C NL+ LR + +R+K+ A+ +E Sbjct: 300 NRCPVLLPEKMADAAVAERSGLDLAVCHGNLQRLRAYDERMPGALRDKLRAV-SELSGRE 358 Query: 359 PSDNVDAQLY-NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPG 417 P + D LY GF DR + VL P +L + F D R+E++LF YRARN+P Sbjct: 359 PETDPDRMLYSGGFIPKEDRRTLDRVLALTPEDLATTTVAFEDTRLEEMLFRYRARNYPE 418 Query: 418 TLDYAEQQRWLEHRRQVFTPE-----FLQGYADELQMLVQQYADDKEKVALLKAL 467 TL+ E+ RW E+R + L+ ++ + +L+ L Sbjct: 419 TLNDEERARWEEYRFARISEGDGRSLNLEDLNGIIEERLIAAQITDRDRHVLEEL 473 >UniRef50_B8KPJ8 Exodeoxyribonuclease I n=1 Tax=gamma proteobacterium NOR5-3 RepID=B8KPJ8_9GAMM Length = 482 Score = 477 bits (1227), Expect = e-133, Method: Composition-based stats. Identities = 208/475 (43%), Positives = 275/475 (57%), Gaps = 14/475 (2%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 T +HDYETFG P DRPAQFA +RTD + N IGEP V Y KP DY+P P A Sbjct: 1 MSSSETLYWHDYETFGVDPGYDRPAQFAGLRTDLDLNPIGEPLVLYAKPPRDYVPHPDAC 60 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 LITGITPQ A A G EA F I F TC +GYN++RFDD VTR YRN DPY Sbjct: 61 LITGITPQAALAAGVPEADFIKAILHEFMQRGTCAVGYNSLRFDDTVTRATLYRNLRDPY 120 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 A + SRWDL+D++R YALRPEG+ WPE DDGLPSFRLE L +ANG+ AHDA+ Sbjct: 121 AREYGDGRSRWDLIDIVRTAYALRPEGLIWPERDDGLPSFRLEDLCEANGLAQGRAHDAL 180 Query: 185 ADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTS 244 DV ATIA+A+L+K RQPRLF +L+ R K + L++ P +P++HVSGMFGA R N Sbjct: 181 VDVQATIALARLLKERQPRLFQWLYQQRFKQAVKPLLE-PMSQPVLHVSGMFGAQRANLG 239 Query: 245 WVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVP-VKLVHI 303 + PLA H +NRN V+ DL+ D L +L + L L+TA DL + P +K VHI Sbjct: 240 LILPLAAHHQNRNEVMCADLSIDADLLTDLPAAELHRLLFTANADLAEGEQRPGLKSVHI 299 Query: 304 NKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQ-----VREKVVAIFAEAEPFT 358 N+CPVL A R ++ + C NL+ LR+ Q +R+K+ ++ +E Sbjct: 300 NRCPVLLPAKMADAAVTQRADLDLEACRANLQHLRDYEQHMPGALRDKLRSV-SELSTRA 358 Query: 359 PSDNVDAQLY-NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPG 417 P + D LY GF DR + +L+ P +L + F D R++++LF YRARN+P Sbjct: 359 PETDPDRMLYSGGFIPKEDRRTLDRILDLSPEDLADTTVAFDDLRLQEMLFRYRARNYPQ 418 Query: 418 TLDYAEQQRWLEHRRQVFTPE-----FLQGYADELQMLVQQYADDKEKVALLKAL 467 TL EQ RW E R + L+G + ++ + + +L+ L Sbjct: 419 TLSAEEQLRWEEFRFNRISEGDGRSLTLEGLNELIEERLASPQLCERDRQVLEEL 473 >UniRef50_Q21WQ6 Exodeoxyribonuclease I subunit C n=24 Tax=cellular organisms RepID=Q21WQ6_RHOFD Length = 485 Score = 476 bits (1225), Expect = e-133, Method: Composition-based stats. Identities = 211/477 (44%), Positives = 287/477 (60%), Gaps = 15/477 (3%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 M TFL+HDYETFGT+ DRPAQFAAIRTD+E NVIG P + YC+PA D+LP P Sbjct: 1 MTPSPSHHTFLWHDYETFGTNTRRDRPAQFAAIRTDAELNVIGAPLMLYCQPAGDFLPDP 60 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 A LITGITPQ KG E FAA+I F++P T +GYN +RFDDE+TR +F+RN Sbjct: 61 QACLITGITPQLCLEKGIPEYQFAAQIEQAFSLPGTVGVGYNTIRFDDEITRFMFWRNLI 120 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 DPYA WQ+D RWDLLDV+R YALRP+G+ WP N +G PSF+L L+ ANG+ H AH Sbjct: 121 DPYAREWQNDCGRWDLLDVVRTAYALRPDGMEWPLNAEGKPSFKLTDLSAANGLLHEAAH 180 Query: 182 DAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVP----QMKPLVHVSGMFG 237 DA++DV ATIA+A+L+KT QP+LFD+ F K ++MA + +P Q +P +H+SGMF Sbjct: 181 DALSDVRATIALARLIKTAQPKLFDFCFGLHKKDRVMAELGLPTTLTQARPFLHISGMFA 240 Query: 238 AWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDN-AAV 296 RG + + PLA HP N+N ++ DLA D L +++++ +R RL+T DL + + Sbjct: 241 PERGCLALMWPLAMHPANKNELLAWDLAFDPRELAQMNAEQIRLRLFTKTADLPEGVQRL 300 Query: 297 PVKLVHINKCP-VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAE 355 PVK +H+NK P V+ TL A R G+N L N + P + A+F Sbjct: 301 PVKSIHLNKSPTVIGNYKTLSSAMAQRWGLNLDAQLANAAHAQALPDMSGIWPAVF--KR 358 Query: 356 PFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNF 415 P + +VD LY GF +ADR + + + + + L + F D R+ +LL+ YRARNF Sbjct: 359 PAAATPDVDEDLYGGFVGNADRRRLNDLRQLKAQELASARPAFDDARLTELLWRYRARNF 418 Query: 416 PGTLDYAEQQRWLEHRRQVF-----TPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 P +L E RW HR ++ +EL L + D+ A+L AL Sbjct: 419 PQSLSADELARWEAHRSARLFDGEGGALTIEQLFEELDSLAESA--DERGEAILGAL 473 >UniRef50_Q8K923 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidicola (Schizaphis graminum) RepID=EX1_BUCAP Length = 482 Score = 471 bits (1212), Expect = e-131, Method: Composition-based stats. Identities = 205/462 (44%), Positives = 301/462 (65%), Gaps = 5/462 (1%) Query: 6 KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 K + FLF+DYETFG H +LD+PAQF++IRTD FN++ EP+ FYC P+DDYLP P ++L Sbjct: 7 KNEVNFLFYDYETFGIHTSLDKPAQFSSIRTDKNFNIMEEPKCFYCFPSDDYLPDPSSIL 66 Query: 66 ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA 125 ITGITP+ G NE F+ +IH + P TCI+GYNN+ FDDE+TRNIFYRNF DPY Sbjct: 67 ITGITPEYTEKHGFNEYKFSKKIHDVLLKPNTCIIGYNNINFDDEITRNIFYRNFLDPYE 126 Query: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMA 185 WSW+++NSRWDLL+V+RACYALRP GI WP+N+ GLP F+L LT+ N I H NAHDA + Sbjct: 127 WSWKNNNSRWDLLNVVRACYALRPSGIQWPKNEFGLPVFKLSDLTQKNNISHYNAHDATS 186 Query: 186 DVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSW 245 DVYATI +AKL+K +QP+LFD+ F +R K++L LID+ + P+++VS FGA R N S Sbjct: 187 DVYATIELAKLIKRKQPKLFDFFFKYRKKNELCRLIDIEKFTPIIYVSSYFGALRQNMSC 246 Query: 246 VAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINK 305 + PL+W N+N +I +DL DI L+ + + + + D + + LV++N+ Sbjct: 247 ILPLSWDLHNKNILISIDLFKDIDKLI-----VFCKTVSISNISIKDLFDLGIVLVYLNR 301 Query: 306 CPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDA 365 CP+LA +R ED +RL + + ++++N + + V + + S NVD Sbjct: 302 CPILAPIKVIRKEDTNRLNFKKYFYYKKINLVKKNYFLIDLVKNVLLKKNENKNSLNVDL 361 Query: 366 QLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQ 425 Q+Y+ FF+ D+ +K + T+ +L + + F D R+++L F Y+ARNF L E++ Sbjct: 362 QIYDSFFNFHDKNLIKKISLTKSSDLKKMKLDFKDPRLKELFFRYKARNFFNILKNDEKK 421 Query: 426 RWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 W+ + + FL GY D+++ L++ Y+ D +K LL L Sbjct: 422 EWINYCLKTLNSFFLTGYIDKIESLLKIYSYDVKKNNLLSDL 463 >UniRef50_A0Z9I3 Exonuclease n=1 Tax=marine gamma proteobacterium HTCC2080 RepID=A0Z9I3_9GAMM Length = 483 Score = 470 bits (1209), Expect = e-131, Method: Composition-based stats. Identities = 211/468 (45%), Positives = 279/468 (59%), Gaps = 6/468 (1%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 +F +HDYET G + DRP QFA +RTD FNVI EP V YC+P+ D L P A+ Sbjct: 1 MSSSESFYWHDYETSGANVFEDRPLQFAGVRTDKNFNVISEPLVHYCRPSPDCLLHPAAI 60 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 +TGI+P +A A+G NE AF A+I F VP TC LGYN+VRFDDE+TR YRNF+ PY Sbjct: 61 RVTGISPYKALAEGANEGAFMAKIQREFMVPGTCALGYNSVRFDDEITRFALYRNFFPPY 120 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 A + + SRWDL+DV RA YALRP+GI WP +DGLPSFRLE LT ANGI+H NAHDA+ Sbjct: 121 AREFGQNRSRWDLIDVARAIYALRPDGIVWPIREDGLPSFRLEDLTAANGIDHGNAHDAL 180 Query: 185 ADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTS 244 ADV ATIA+AKL+ QP LFD L+ R K + L++ KP++HVSG FGA R N + Sbjct: 181 ADVLATIALAKLLSKAQPTLFDTLYAQRGKQAIAPLLNCLDPKPVIHVSGQFGAQRDNLA 240 Query: 245 WVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDN-AAVPVKLVHI 303 V PLA HP N+N VI DL G+ L+ S+ +R+ L+T K D P+K++ I Sbjct: 241 IVLPLAVHPTNKNGVICADL-GEAPAFLDQSSEDVRQLLFTPKADFPAGVQRPPLKMIQI 299 Query: 304 NKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEA----EPFTP 359 N+ PV+ + E A RL ++ +L R QV K F E F P Sbjct: 300 NRAPVVLPTTWVSGEPAQRLRLDGDQTRASLAAYRVARQVDPKGFTRFIEEIYADRAFAP 359 Query: 360 SDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTL 419 + D QLY GF D A ++ + + P +L + TF D+R+ ++ F YRARNFP +L Sbjct: 360 RSDPDTQLYEGFLGRHDEALLETIRQATPDSLASHTWTFEDRRLPEVFFRYRARNFPESL 419 Query: 420 DYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 D E+ RW EH R+ T + + + L ++ A + V + AL Sbjct: 420 DPDEKARWREHCRETLTGKAGPDWEGFSKQLNEERAREGLSVMQIAAL 467 >UniRef50_B4SPA5 Exodeoxyribonuclease I n=3 Tax=Stenotrophomonas RepID=B4SPA5_STRM5 Length = 479 Score = 465 bits (1196), Expect = e-129, Method: Composition-based stats. Identities = 204/469 (43%), Positives = 282/469 (60%), Gaps = 9/469 (1%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 +FLF+D ETFG P R +Q+AAIRTD++ N I P F+ +PADD LP P A L+ Sbjct: 1 MADSFLFYDLETFGQDPRRTRISQYAAIRTDADLNEIDTPVSFFVRPADDLLPSPMATLV 60 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 TGITPQ+A A+G +EA RI+ + P TC LGYN +RFDDE R +RNF+DPY Sbjct: 61 TGITPQQALAEGISEAEAFDRINEQLSRPGTCALGYNTLRFDDEFVRYGLFRNFHDPYER 120 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 W++ NSRWDLLD++R A+RPEGI WP +DG SF+LEHL +AN + +AH+A++D Sbjct: 121 EWRNGNSRWDLLDMLRLMRAMRPEGIQWPLREDGATSFKLEHLAEANNVREGDAHEALSD 180 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWV 246 V ATI MA+L K QPRL+DY R+K + +L+DV MKP++H+S + A R + V Sbjct: 181 VRATIGMARLFKQSQPRLWDYALKLRDKRFVGSLLDVAAMKPVLHISMRYPASRLCAAPV 240 Query: 247 APLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDN-AAVPVKLVHINK 305 PL+ HP N VI+ DL GDI LLEL ++ + +RLY ++L + VP+K V +NK Sbjct: 241 LPLSMHPTVNNRVIVFDLDGDIDDLLELPAEVIAQRLYMRASELPEGATRVPLKEVQLNK 300 Query: 306 CPVLAQANTLRPEDADRLGINRQHCLDNLKILRE-NPQVREKVVAIFAEAEPFTPSDNVD 364 P L N LR +D RLG++ + LR PQ+ EK ++ + + +VD Sbjct: 301 VPALIAWNHLRADDHARLGLDVAAIEAKAERLRAFAPQLAEKARQVYNQPRVANVA-DVD 359 Query: 365 AQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQ 424 A LY+GF D+ + + T P L AL+ F D R+ +LLF YRARN P +L E+ Sbjct: 360 ASLYDGFLGAGDKPLLALARTTAPEQLAALEGRFRDPRLPELLFRYRARNHPDSLAPDER 419 Query: 425 QRWLEHRRQV------FTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 QRW ++RRQ L Y +L L + DD + LL++L Sbjct: 420 QRWQDYRRQRLLGDGGLGELNLPQYQQQLDALAAEAPDDARRQDLLQSL 468 >UniRef50_A4BJV3 Putative exodeoxyribonuclease i protein n=1 Tax=Reinekea blandensis MED297 RepID=A4BJV3_9GAMM Length = 517 Score = 451 bits (1161), Expect = e-125, Method: Composition-based stats. Identities = 185/469 (39%), Positives = 271/469 (57%), Gaps = 10/469 (2%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 M N+ ++L++DYET+GT P+ DR AQFAA+RTD + N+I EP +CKP D + Sbjct: 1 MPNNATHPPSYLWYDYETWGTVPSRDRIAQFAAVRTDMDLNIIEEPINLFCKPDIDTVID 60 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 PGAV IT ++P E G +E F+ +H+ P TC GYN++RFDDE +R +FYRN Sbjct: 61 PGAVQITRLSPLELEQTGLSEWEFSQAVHNAMAQPNTCTTGYNSIRFDDECSRFLFYRNL 120 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 +PY W++ NSRWDLLDV+R +ALRP+GI WP DDG PSFRLEHLT ANG+ H+NA Sbjct: 121 INPYEREWKNGNSRWDLLDVVRMTHALRPDGIEWPRRDDGSPSFRLEHLTAANGLSHANA 180 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 HDA++DV ATIA+A+L++ +QP+LFDY F+ R+KH+ ID+ KP +H SG A Sbjct: 181 HDAVSDVKATIALAQLIRKQQPKLFDYAFSLRSKHRAREAIDLVGGKPHLHFSGKIPASE 240 Query: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDN-AAVPVK 299 PL HP+ N VI++D+ D + +L+ D+DTLR LY +L + P+K Sbjct: 241 FCMGIEVPLMAHPDRNNEVIVIDIREDPAWILDHDADTLRTWLYAKTEELPEGARRPPLK 300 Query: 300 LVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTP 359 +H+N+ P++A + L E RLG++ + + + ++P++ + +F E + Sbjct: 301 TIHLNRSPMIAPMSLLDDETTTRLGVDLDAIQHHYRWVADHPELNRLAMDVFTETQERAA 360 Query: 360 SDNVDAQLYNGFFSDADRAAMKIVLE--TEPRNLPALDITFVDKRIEKLLFNYRARNFPG 417 + + LY+GF SD D+A + + P D R+ +L N AR FP Sbjct: 361 ITDPEQALYSGFISDHDQALLNRMRTGKLPPEQWLDNSHLLQDDRLPTILLNLLARAFPD 420 Query: 418 TLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKA 466 L + W + RR +L DE + + Q D +ALL Sbjct: 421 CLTEQQLSEWQDQRRT-----YLIEQQDERHLTLSQALTD--TLALLAE 462 >UniRef50_UPI0000E0E98F exodeoxyribonuclease I n=1 Tax=Rhodobacterales bacterium HTCC2255 RepID=UPI0000E0E98F Length = 488 Score = 450 bits (1158), Expect = e-125, Method: Composition-based stats. Identities = 180/477 (37%), Positives = 268/477 (56%), Gaps = 14/477 (2%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 + ++FLFHDYET+G P D P QFAAIRTD EP K DYLP P AV Sbjct: 2 SQPPASFLFHDYETWGISPQHDYPCQFAAIRTDENLQQCDEPINITAKIHLDYLPHPQAV 61 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 L+TGITPQ A+GE E F +IH P TC++GYN+++FDDEV+R F+RNF DPY Sbjct: 62 LVTGITPQMTLAEGEYEYTFMQKIHQAMIQPNTCVVGYNSIKFDDEVSRFSFFRNFMDPY 121 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 + H NSRWDL++++RACYALRPEGI WP D+GL SF+LE LT+ NGI H+NAHDA+ Sbjct: 122 QREYLHGNSRWDLINLVRACYALRPEGIKWPLGDNGLVSFKLERLTQENGISHTNAHDAL 181 Query: 185 ADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTS 244 +DV+ATIA+A+L++ +QP+LF Y + R+K ++ +++ +PL+ ++ A G S Sbjct: 182 SDVHATIAIAQLIQQQQPKLFAYAYQLRSKQAVIRILEQHHGQPLIFINPYRSAKFGCVS 241 Query: 245 WVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAA-VPVKLVHI 303 + P+ HP N+NA + +DL DI PL+ D DTL+ + K + + ++ Sbjct: 242 IIMPMCPHPVNKNATVCIDLTKDIFPLINEDLDTLQRIQFLPKAQRNEETPDIATIVIKH 301 Query: 304 NKCPVLAQANTLRPEDADRLGINR---QHCLDNLKILRENPQVREKVVAIFAEAEP---- 356 N+CP LA TL ++ L I+ +++LK + ++ + ++ + Sbjct: 302 NQCPFLAPIKTLSQSRSEALNIDLNKVDQQVEHLKHICQDQESYANLIMTLTQLNSQTYD 361 Query: 357 -FTPSDNVDAQLY-NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARN 414 P+ +V+A LY GF +DA++ + V P L L RI++L + ARN Sbjct: 362 AEKPATDVEASLYTGGFMNDAEKQFCQQVHMASPNELVNLKNNTPSPRIDELFQRFIARN 421 Query: 415 FPGTLDYAEQQRWLEHRRQVFTPE----FLQGYADELQMLVQQYADDKEKVALLKAL 467 F TL Q +W ++ T L Y + ++ L ++ LL+ L Sbjct: 422 FLDTLSTDLQSQWYVDCQRRLTNNTQKLTLMRYFEIIEELKSTENLSSTQLYLLEEL 478 >UniRef50_A5KSP8 Exodeoxyribonuclease I n=2 Tax=candidate division TM7 RepID=A5KSP8_9BACT Length = 476 Score = 448 bits (1153), Expect = e-124, Method: Composition-based stats. Identities = 174/470 (37%), Positives = 255/470 (54%), Gaps = 9/470 (1%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 MM D + TF F+D ET G P DR QFA RT + + IGEP + DD LP Sbjct: 1 MMKDMAE--TFFFYDLETSGLDPRRDRIMQFAGQRTTMDLDPIGEPFNILVRLNDDVLPS 58 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 P AV++TGITPQ+ +G EA F H+ P T +G+NN+RFDDE R +RNF Sbjct: 59 PDAVMVTGITPQKTHEEGIAEAEFIKLFHNQVCTPGTVTVGFNNIRFDDEFIRFALWRNF 118 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 +DPY W+W+ SRWDLLDV+R ALRP GI WP + P+ RLE LT N +EHS A Sbjct: 119 HDPYEWAWKDGRSRWDLLDVVRMTRALRPGGIVWPVDKSDKPTNRLELLTSENNLEHSQA 178 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 HDA++DVYA IA+ ++V+ +QP+LF+YLF+ R+K + L++ + KP+V+ SG + A Sbjct: 179 HDALSDVYALIAITRMVRDKQPKLFEYLFSIRDKKAVTQLVNPYKPKPIVYTSGRYDANY 238 Query: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDN--AAVPV 298 TS V P+A + DL + +L + +++RL + D A+PV Sbjct: 239 HKTSVVFPIA-EGSRPGTTFVYDLRHNPQQFTDLSPEEIKKRLLAKWEERKDPNFVAIPV 297 Query: 299 KLVHINKCPVLAQANTLRP-EDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPF 357 K V N+ P +A L + + + + +L++L+ +P + K+ + E+ F Sbjct: 298 KEVTHNRAPAVAPLGVLEQGGGWENIQLTNETVRKHLEVLQRSPDLVTKIKTAY-ESRSF 356 Query: 358 TPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPG 417 S + +AQLY+ F +D D+ ++ V R L F DKR+ LL Y+ARNFP Sbjct: 357 PKSSDAEAQLYDSFLNDKDKTHIQAVRNASERELADFHPEFNDKRLPPLLIRYKARNFPR 416 Query: 418 TLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 +L EQ W +R E L GY + + + + + LL+ L Sbjct: 417 SLSEEEQVEWEAYRATRLQAE-LPGYMGAIARIAKTDPSENTQF-LLQEL 464 >UniRef50_P57620 Exodeoxyribonuclease I n=2 Tax=Buchnera aphidicola (Acyrthosiphon pisum) RepID=EX1_BUCAI Length = 413 Score = 435 bits (1118), Expect = e-120, Method: Composition-based stats. Identities = 195/416 (46%), Positives = 273/416 (65%), Gaps = 5/416 (1%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 M+ K+ FLF+DYETFG H ALD+PAQFA IRTD N+I +P+ FYC P+DDYLP Sbjct: 1 MIQFQKKTPNFLFYDYETFGIHTALDKPAQFACIRTDINLNIIDDPQYFYCFPSDDYLPD 60 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 PG+VLIT ITPQ G NE F+ +I+ + TC++GYNN+ FDDE+TRNIFYRNF Sbjct: 61 PGSVLITHITPQYTEKNGTNEYNFSQKIYDILMQSNTCVVGYNNINFDDEITRNIFYRNF 120 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 +DPY WSW++ NSRWD+L+++RACYALRP GINWP+N+ GL SF+L LTK N I H NA Sbjct: 121 FDPYEWSWKNGNSRWDILNLLRACYALRPTGINWPKNELGLTSFKLSDLTKTNNIVHLNA 180 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 H+A++DVYATI +AKLVK +QPRLFD+ F R K++L LID+ +P++++S FGA Sbjct: 181 HNAVSDVYATIEIAKLVKKKQPRLFDFFFKIRKKNELYKLIDLRNFQPIIYISAYFGAIY 240 Query: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 N S + P+AWH N N +I +DL DI L+ + + ++ V L Sbjct: 241 HNMSCILPIAWHENNSNILIAIDLFKDIKTLINMCKKICFDSIFIKN-----LLDSGVVL 295 Query: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPS 360 +H+N+CP+LA +R ED +RL +R ++++++N + + IF++ Sbjct: 296 LHLNRCPILAPIQVIRKEDYNRLNFHRFSLNKKIELIKKNMFFIQNIKIIFSKNNNTNQF 355 Query: 361 DNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFP 416 NVD ++YNGFF+ D+ ++I+ T+P L + F D R++ L F YRARNF Sbjct: 356 FNVDLEIYNGFFNSKDKKKIQIIRNTDPVFLKHIFCNFHDSRLKNLFFRYRARNFF 411 >UniRef50_Q89A43 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidicola (Baizongia pistaciae) RepID=EX1_BUCBP Length = 481 Score = 427 bits (1097), Expect = e-118, Method: Composition-based stats. Identities = 194/470 (41%), Positives = 292/470 (62%), Gaps = 10/470 (2%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 M TFLF+DYETFG +PALD+P+QF+ I+TD +FN+IG + +C P+ DYLP Sbjct: 1 MDIQKNTSLTFLFYDYETFGKNPALDKPSQFSCIQTDIDFNIIGSIQEIFCYPSVDYLPD 60 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 P +VLITGI+P+ G NE FA +I+SLF TCI+GYNN+ FDDE TRNIFYRNF Sbjct: 61 PESVLITGISPKYTSLFGVNEFEFAKKIYSLFMKSDTCIIGYNNIYFDDEFTRNIFYRNF 120 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 + Y WSW++ NSRWD+LD++RACY LRPEGINWP N+D S RL ++ AN I H+ A Sbjct: 121 LNSYEWSWKNGNSRWDMLDLLRACYVLRPEGINWPRNEDNSVSLRLSDISLANNIVHNVA 180 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 H+A +DVYAT+ +AKL+K ++P+LF++ F +R K ++ LIDV + P+V++S FG Sbjct: 181 HNASSDVYATMNIAKLIKQKKPKLFNFFFKYRTKKAILTLIDVNSLNPIVYISRFFGVVN 240 Query: 241 GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKL 300 S++ P+ WHP N N ++ +DL+ D+ +L +R + + + ++ Sbjct: 241 RYISYIVPILWHPINSNILVSIDLSQDVQKILN-----FFKRNSILNVNYKEIFLMGIRF 295 Query: 301 VHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILREN---PQVREKVVAIFAEAEPF 357 +++N+CP+L N +R +D RL IN + +NL +LR+N + +K + AEA + Sbjct: 296 IYVNRCPILIPTNVIRMKDRIRLRINYKLFQNNLVLLRKNIFLKKKLKKFLCSIAEAPKY 355 Query: 358 TPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPG 417 S NVD ++YN FFS D +K + T P+ ++ D RI +L + AR P Sbjct: 356 NGS-NVDLKMYNSFFSYIDNNVIKNIHSTLPK-RIKINFMKYDNRINQLFILFLARYRPD 413 Query: 418 TLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 LDY+E+ W++ +F+ +Q Y +++ L+ +Y + V LL+ L Sbjct: 414 MLDYSEKYFWIQRYLNIFSYANIQKYENKILKLIVKYKNHVRNVQLLEEL 463 >UniRef50_A5CVQ8 Exodeoxyribonuclease I n=4 Tax=Gammaproteobacteria RepID=A5CVQ8_VESOH Length = 473 Score = 423 bits (1087), Expect = e-117, Method: Composition-based stats. Identities = 166/469 (35%), Positives = 261/469 (55%), Gaps = 16/469 (3%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 TF ++DYETFG P +DR +QFA IRTD FN++ E ++FYCKP +D L P LITG Sbjct: 2 KTFYWYDYETFGISPKIDRISQFAGIRTDENFNILDE-QMFYCKPTNDCLLSPETCLITG 60 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 I+PQ KG E F +IH+ + P TC++GYN++RFDDE TR YRNF DPY W W Sbjct: 61 ISPQLCEQKGMIEHKFIKKIHAQLSTPDTCVIGYNSIRFDDEFTRYALYRNFIDPYTWHW 120 Query: 129 QHDNSRWDLLDVMRACYALRPE-GINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 ++ N+RWD+LDV+R CYAL+ + + W ++ F+L+ L+ AN IEH+ AH+A+ADV Sbjct: 121 KNGNTRWDILDVVRLCYALKKDTSLKWVYDEQNKVIFKLDQLSLANNIEHTYAHNALADV 180 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 247 YATIA+AK++K QP+LF+Y F+ R K + I + +P++H S ++ A T Sbjct: 181 YATIAIAKIIKKTQPQLFNYAFSLRKKKTIKEKIKL--FEPMLHTSRVYSATLSCTRLSV 238 Query: 248 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTD---LGDNAAVPVKLVHIN 304 LA+H + V + +L D LLEL+ TL+ ++T + + +K + N Sbjct: 239 ALAYHS-YHDRVFVFNLDQDPCILLELNIKTLKTLMFTKNNQSALSKEMKGLQIKELIFN 297 Query: 305 KCPVLAQ-ANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVA-IFAEAEPFTPSDN 362 K P+ L + +L I+ CL L+ +++N + KVV ++ + PS + Sbjct: 298 KSPMFVPNVYKLESKIIKQLKIDMSTCLQRLEFIKKNQVIISKVVQDLYRNDQQRQPSSD 357 Query: 363 VDAQLYNGFFSDA-DRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421 VD LY+ F +D D+ + L F D R+ KLL +++ARN+P L Sbjct: 358 VDQALYDDFINDNTDKHICNQIQTLSTNELKNFHPKFKDNRLSKLLIHFKARNYPNILTE 417 Query: 422 AEQQRWLEHRRQVF-----TPEFLQGYADELQMLVQQYADDKEKVALLK 465 E++ W + ++ + Y + ++ +Q+ + ++ L+ Sbjct: 418 NEKEEWFKTVQERVQTGKNGYTTIDDYLARINIIRKQHPNQEKLWKQLE 466 >UniRef50_Q056Y2 Exodeoxyribonuclease I n=1 Tax=Buchnera aphidicola str. Cc (Cinara cedri) RepID=Q056Y2_BUCCC Length = 475 Score = 419 bits (1077), Expect = e-115, Method: Composition-based stats. Identities = 149/466 (31%), Positives = 255/466 (54%), Gaps = 6/466 (1%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 M + + +F+DYETFG + ALD+ +QF +I TD++F+ I + + +C P DYLP P Sbjct: 1 MCEYFSKKKIIFYDYETFGKNVALDKVSQFCSIETDNKFSYIIKKTILFCYPPIDYLPDP 60 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 A+LIT I PQ G NE + +IH +F+ CI+GYNN+ FD+ +TRNIFYRN + Sbjct: 61 EAILITKILPQYTYKYGLNEYFLSKKIHDIFSQKNICIIGYNNINFDNLITRNIFYRNLF 120 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 DPY WSW+++N WD+L+++RA Y P+ + W N +G SF+L +T N I+H + H Sbjct: 121 DPYEWSWKNNNFSWDILNILRAFYIFLPKSMCWYYNSNGTVSFKLSDITLVNNIKHIHIH 180 Query: 182 DAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG 241 DA +DVYAT + K + ++ F YL+ K + + + KP ++S FG+ Sbjct: 181 DAYSDVYATFLITKYLFSKYKNFFLYLYMISKKKYISSFLLNNINKPFFYISSFFGSINY 240 Query: 242 NTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLV 301 N + + HP +N +++ DL+ D + L ++ T + V +K+V Sbjct: 241 NFGCIMYIGLHPLYKNNIVIFDLSSDFKKIFN-----LYKKYSTCLISIKKLFNVGIKVV 295 Query: 302 HINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSD 361 I+K P+ N++ + RL I+ C N +L+ N ++ +++ F+ + + Sbjct: 296 SISKSPLFFSYNSVSLKHCIRLNIDYLKCQKNFFLLKNNFLIKNWIISCFSYKKKEKI-N 354 Query: 362 NVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421 ++D LYN FF ++DR + + + EP+ F+D RI+KL F +ARNF L++ Sbjct: 355 DIDLMLYNNFFLNSDRCLLSFIHKNEPKKWMGWSANFLDNRIKKLFFRLKARNFIKLLNF 414 Query: 422 AEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 E ++W + + L+ Y ++++ ++ + + LL+ L Sbjct: 415 NEIKKWQFYCKNKINFIKLEEYFEKIKKFQLKFNKNDKNFILLEDL 460 >UniRef50_D0KZN4 Exodeoxyribonuclease I n=1 Tax=Halothiobacillus neapolitanus c2 RepID=D0KZN4_HALNC Length = 495 Score = 409 bits (1052), Expect = e-113, Method: Composition-based stats. Identities = 172/485 (35%), Positives = 256/485 (52%), Gaps = 28/485 (5%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 +FLF+D+ET G+ P DRP QFAA+RT+ E I P Y + + LP P AVL+TGI Sbjct: 2 SFLFYDFETTGSDPRCDRPIQFAALRTNDELEPIDSPLTLYATLSPEVLPHPQAVLVTGI 61 Query: 70 TPQEARAKG-ENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 PQ + G EA FAA IH+ P TC +G+N++RFD E+ R +F+RN DPYA W Sbjct: 62 LPQTLASSGGRPEAEFAALIHAEMMQPGTCAVGFNSLRFDAELLRFMFWRNLRDPYAHEW 121 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 + NSRWD+LD RA LRPEGI+WP ++ G P+ RLE LTK N I H+NAHDA+ DV Sbjct: 122 KSGNSRWDVLDAARAFRLLRPEGIHWPTDEQGAPTLRLEALTKVNVIAHANAHDALGDVE 181 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 AT+A A+L++ + P+LF+YL + R K + +D P+ VHVSG + G+ S A Sbjct: 182 ATLAFARLMRAQSPKLFEYLLSLRKKAVVADFVDNPERASFVHVSGRISSTLGSASVFAN 241 Query: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNA-AVPVKLVHINKCP 307 L ++ DL D + +L+ D +TL R + D DN +P+KL+H+N+ P Sbjct: 242 LGQVQGINTQRLLWDLRFDPTEVLDDDMETLAARRFLRDADAQDNQHRLPIKLLHLNRAP 301 Query: 308 VLAQANTLRPEDA-DRLGINRQHCLDNLKILRE-NPQVREKVVAIFAEAEPFTPSDNVDA 365 V+ L+ D +R+ ++ N + + + +V +K+ A+ AE F S + + Sbjct: 302 VVVPNAILKEGDIVERMQLDLDAVQKNTRTMAQFKREVADKLHAVLAEQMAFA-SQDAEC 360 Query: 366 QLYNGFFSDADRAAMKIVLET---------EPRNLPA-------LDITFVDKRIEKLLFN 409 LY GF + DR A+ ++ P + ++ D R+ +L+F Sbjct: 361 ALYEGFMPNVDRYALDDFNRVFDQAMAAGGSAQDEPVTEALRKLMAQSWQDARLPELVFR 420 Query: 410 YRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADE------LQMLVQQYA-DDKEKVA 462 + AR P L+ E+ +W Q Y + L+ A D+ +A Sbjct: 421 FVARLRPDLLNEDERTQWQSWVDSRLNAAPDQRYMGFAGFFAAIDALMADAAYRDEATLA 480 Query: 463 LLKAL 467 LL L Sbjct: 481 LLTQL 485 >UniRef50_Q7VQX2 Exodeoxyribonuclease I n=2 Tax=Candidatus Blochmannia RepID=Q7VQX2_BLOFL Length = 501 Score = 407 bits (1047), Expect = e-112, Method: Composition-based stats. Identities = 187/486 (38%), Positives = 283/486 (58%), Gaps = 21/486 (4%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 M ++ TFL +DYETFG +PALDRPAQFA+IR ++ + + EVF+C+ +DYLP P Sbjct: 1 MLSNIKKPTFLIYDYETFGLNPALDRPAQFASIRVNNSLCPVEKKEVFFCQIPNDYLPNP 60 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 +VLITGITP + + G E FA +I F VP TCILGYNN+ FDDE +RNIFYRNFY Sbjct: 61 ESVLITGITPYDTLSNGLLEPQFAYQISQKFNVPNTCILGYNNISFDDEFSRNIFYRNFY 120 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 DPY WS+ H NSRWDLL V+RA Y+L P GI WP N SFRL LT AN I+H NAH Sbjct: 121 DPYKWSYHHGNSRWDLLPVLRAFYSLYPTGIQWPINSKKKVSFRLTDLTLANSIQHLNAH 180 Query: 182 DAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG 241 DA +D++AT+ + KL+K QP+LF +L+ HR K++L +I++ MKPL+H+S Sbjct: 181 DATSDIFATLEIMKLIKYTQPQLFQFLYNHRTKNQLQKIINLNSMKPLIHISNKINNKYN 240 Query: 242 N-TSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGD-NAAVPVK 299 N ++ P+ HP N N +I +L + L L+ +TL + + + + + +P++ Sbjct: 241 NFIHFLLPITLHPNNHNVLITYNLLNKLDILWNLNINTLYQNIKDNQQCIYNLLKQIPLQ 300 Query: 300 LVHINKCPVLAQANTLRPED-----ADRLGINRQHCLDNLKILRE---NPQVREKVVAIF 351 L+ +N CP+ L+ + L + Q+ L NL +++ +++K+ + + Sbjct: 301 LIRLNSCPIFIPITVLQENNNIFKYTSELLSDYQNHLKNLHEIKQKINYTHLQQKIKSFY 360 Query: 352 AEAEPFTP------SDNVDAQLYNGFFSDADRAAMKIVLETEPRNL---PALDITFVDKR 402 E + S +VD QLYNGFF +D +K + ++ D R Sbjct: 361 VIIESYLNKIKNKLSTHVDNQLYNGFFQYSDCRIIKQIRNITDVQKLSTIHINSNSNDNR 420 Query: 403 IEKLLFNYRARNFPGTLDYAEQQRWLEHRRQV-FTPEFLQGYADELQMLVQQYADDKEKV 461 ++ LLF YR+RNFP TL+ E++ W +++ + + + Y + L+ ++ +K+ Sbjct: 421 LKSLLFFYRSRNFPHTLNSEEKKIWTTYKKNMLLNQDKYKNYLHHINYLLFN-QNNIKKI 479 Query: 462 ALLKAL 467 LL +L Sbjct: 480 NLLSSL 485 >UniRef50_B8KX06 Exonuclease I n=1 Tax=gamma proteobacterium NOR51-B RepID=B8KX06_9GAMM Length = 408 Score = 390 bits (1001), Expect = e-107, Method: Composition-based stats. Identities = 166/402 (41%), Positives = 232/402 (57%), Gaps = 13/402 (3%) Query: 76 AKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRW 135 +G++E F +IH+ VP TC +GYN++RFDDEV R YRNF+DPY + + NSRW Sbjct: 2 DRGDSECDFVDKIHAALAVPGTCGVGYNSIRFDDEVMRFALYRNFFDPYQREYANGNSRW 61 Query: 136 DLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAK 195 DL+DV RA YALRPEG WP D+GLPSFRLE LT ANGI H AHDA++DV ATI +A+ Sbjct: 62 DLIDVARAIYALRPEGTQWPARDNGLPSFRLEDLTAANGIAHGAAHDALSDVDATIDLAR 121 Query: 196 LVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPEN 255 + QP LF L + R K + L+D+ ++P+VHVS M+G+ R N + V PL HP N Sbjct: 122 HFQNVQPALFAELLSMRRKRHVETLMDLGSLRPVVHVSSMYGSDRSNLALVVPLVRHPVN 181 Query: 256 RNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDN-AAVPVKLVHINKCPVLAQANT 314 RN +I DL+ L E + + RL+T ++L + P+K +HINK PV+ Sbjct: 182 RNEIICADLSQPPDFLSE-SATDMAARLFTPASELPEGAVRPPIKTIHINKSPVVLNTQW 240 Query: 315 LRPEDADRLGINRQHCLDNLKILRENPQ-----VREKVVAIFAEAEPFTPSDNVDAQLYN 369 +R E A+RLG++ + +L +R+ +++++ I++E F P + D LY+ Sbjct: 241 VRGEVAERLGLDGEAHRRHLAEIRQANDKNPEGLKQRLQDIYSERR-FAPRTDPDVMLYD 299 Query: 370 GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLE 429 GFF ++DR+ + P L + F D R+E+LLF YRARNFP TLD E RW E Sbjct: 300 GFFPNSDRSQFDGLRAASPEQLAS-GWVFEDARLEELLFRYRARNFPATLDAEESARWQE 358 Query: 430 HRRQVF----TPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 H R + P L + +EL L AL Sbjct: 359 HCRHRYFDADAPFPLTAFREELAQERSAPDLSDSVARALDAL 400 >UniRef50_B5K7E4 Exodeoxyribonuclease I n=3 Tax=Rhodobacteraceae RepID=B5K7E4_9RHOB Length = 500 Score = 348 bits (892), Expect = 3e-94, Method: Composition-based stats. Identities = 121/464 (26%), Positives = 197/464 (42%), Gaps = 38/464 (8%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 F+F+D ET G PA D+P QFAAI TD F C+ A LP P A+++T + Sbjct: 2 DFVFYDLETTGLSPAFDQPLQFAAIYTDENFVEKDR-VNIRCRLAPHILPSPQALVVTRV 60 Query: 70 TPQEARAKGENE-AAFAARIHSLFTVP-KTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 TP + F+ ++ L +GYN ++FD+EV R FYRN + Sbjct: 61 TPDQLTDPSLPSLFEFSQQVAELTERWAPAIWVGYNTIKFDEEVLRQTFYRNLSPNVYAT 120 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 + N+R+D+L + A Y P+ + WP++D G SF+L+ L ANG + NAHDA+ DV Sbjct: 121 QFNGNTRFDILPAVYAAYVREPDLLAWPKDDTGRRSFKLDRLAPANGFKAHNAHDALGDV 180 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 247 ATI +A+L+ R P L+ L + +K ++ A ++ +P V+ FG + Sbjct: 181 EATIHIARLIAMRSPALWSELLDNAHKARVQAKLE--SFRPYELVT-RFGGGEPRSYTGC 237 Query: 248 PLAWHPENRNAVIMVDLA-GDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKC 306 + NR DL D + +E + + + D ++ V NK Sbjct: 238 FCGYSQGNRAQAAFFDLDAADPAEFVEASDEAIFAAV--------DATPKIIRGVSTNKA 289 Query: 307 PVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAE---AEPFTPSDNV 363 P L + E L ++ E P R +V A A +P P V Sbjct: 290 PALLEHTAPSEEH-----------LRRAAVIAEAPAFRLRVGAAMAARFVEDPDAPPKPV 338 Query: 364 DAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAE 423 + Q+Y F+S+AD+ ++ + + D R+ +L A + P L E Sbjct: 339 ERQIYGEFYSNADKQLLQEFQHATWPRRQEIVASLTDPRLRQLGRRLVAFHSPELLSSEE 398 Query: 424 QQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 + R+ ++ ++ + A L+ L Sbjct: 399 TALFNGFLREKWSAPDGPE---------TEWMTHGKAQAALEEL 433 >UniRef50_D0RRC0 Exodeoxyribonuclease I n=1 Tax=alpha proteobacterium HIMB114 RepID=D0RRC0_9RICK Length = 473 Score = 347 bits (890), Expect = 6e-94, Method: Composition-based stats. Identities = 107/468 (22%), Positives = 195/468 (41%), Gaps = 30/468 (6%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 ++F+D+ET G D+ Q AI + F+++ E C +P+PGA+L+ Sbjct: 2 NYVFYDFETTGRSSTWDQIIQVGAILVNDTFDILDRFEA-RCSLKPGTVPEPGALLVNKT 60 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKT-CILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 TP + + + F +GYN++ FD+E R F+++ D Y + Sbjct: 61 TPDMLKKTNLSHFGMVQMMKETFEKWSPAMFIGYNSLSFDEEFLRKTFFKSLTDVYLTN- 119 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 + N R D+L ++R+ + PE + P ++ G F+L+ + NGI H NAHDAM DV Sbjct: 120 TNGNKRGDILGLVRSAHLYYPECLKTPISEKGNAVFKLDQIASMNGISHDNAHDAMGDVL 179 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 AT+ MAK++ + P ++ +K + ++ Q + L V+ F + V+ Sbjct: 180 ATMGMAKIIADKAPSVWKASLMTMSKQDVGNIV---QKEKLFCVNEYFYG-KARPFVVSF 235 Query: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308 + HP N DL D ++D TL++ + + ++ V NK P+ Sbjct: 236 VCNHPVY-NWPQCFDLKNDPEDYFKMDMSTLKDAMKKS--------PKLLRSVKDNKHPI 286 Query: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDN------ 362 + N D + I + + +++N + +KV AI E + Sbjct: 287 IMNPNYATNFDTYK-QIGISKLNERAEKIKQNEEFGKKVSAILQEEAQEKQDLDSQLDVQ 345 Query: 363 VDAQLYNGFFSDAD-RAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDY 421 + +Y+G F D + A+K + E ++ + D+R P + Sbjct: 346 AEESIYSGGFPDDKTKMALKEFQKAEWKDRLVIADKMKDERYNYFAKRLMYEEAPDIMPK 405 Query: 422 A---EQQRWLEHRRQVFTPE---FLQGYADELQMLVQQYADDKEKVAL 463 E R + R E + +EL L +Y +D ++ L Sbjct: 406 DLYNEIHRGIAKRILSTNDEKWNTIPKAYNELDSLRAKYEEDGDEERL 453 >UniRef50_B6J811 Exodeoxyribonuclease I n=7 Tax=Gammaproteobacteria RepID=B6J811_COXB1 Length = 458 Score = 345 bits (885), Expect = 2e-93, Method: Composition-based stats. Identities = 122/478 (25%), Positives = 200/478 (41%), Gaps = 43/478 (8%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 + T+LF+D ET G + D+ QFAAIRTD N + + D +P P A+ Sbjct: 2 SNHRKTYLFYDLETTGLNKCFDQIIQFAAIRTDEALNELNR-HEILIRLNPDVIPSPEAM 60 Query: 65 LITGIT-PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 +I + Q G+ E IH P T +GYN + FDDE R FYRN P Sbjct: 61 IIHRFSIDQML--SGKAEIEAIREIHQSVNTPGTISVGYNTLGFDDEFLRFSFYRNLLPP 118 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDA 183 Y + + R DL + Y +P +NWP+ D +LE+L+KAN + AH+A Sbjct: 119 YTHQYDNFCGRMDLYPLTILYYLFKPNALNWPDPFD----LKLENLSKANQLAEGQAHNA 174 Query: 184 MADVYATIAMAKLVKTRQP--RLFDYLFTHRNKHKLMALIDVPQMKPL------VHVSGM 235 M DV A++A+AKL+ ++ R F + + + ++ + + V + G+ Sbjct: 175 MVDVEASVALAKLLMNQEAMWRYVIGYFDKKTETQRLSQLPIGIQSTFGSHHEGVLIQGV 234 Query: 236 FGAWRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAA 295 FGA + V L H +N + + L D LL D++ + Y + +G+ Sbjct: 235 FGAQLAYQAPVICLGQHNHYKNQCLWLRL--DREELLSTTVDSIPQTTYAIRKKMGEQPI 292 Query: 296 VPVKLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEA- 354 V P + L E RL + ++ K L + Q+ + + Sbjct: 293 VL---------PASDRYLRLSEE---RLQL----ATESKKWLESHSQLFHHIFDYYQNFT 336 Query: 355 EPFTPSDNVDAQLYN-GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRAR 413 P P+ + DA LY GF + + + P + + F + F R Sbjct: 337 YPKVPNLDPDAALYEVGFPTPYEDFLSQRFHLAPPAEKEKIALEFPNPIRRNQAFRLIER 396 Query: 414 NFPGTLDYAEQQRWLEHR----RQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 ++P L Q R L + T E ++++ L Q+ + D+E++ LL L Sbjct: 397 HYPDYLPAETQARSLGLCDYRGERRLTRETA---FNQIESLKQEKSLDQEQLRLLDEL 451 >UniRef50_A3XEM3 Exonuclease I n=3 Tax=Rhodobacteraceae RepID=A3XEM3_9RHOB Length = 459 Score = 343 bits (881), Expect = 6e-93, Method: Composition-based stats. Identities = 114/439 (25%), Positives = 181/439 (41%), Gaps = 29/439 (6%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 F+F+D ET G P D+P QFAAI TD F C+ A LP P A+++T + Sbjct: 2 DFVFYDLETTGISPEFDQPLQFAAIWTDENFVEKDR-VNIRCRLAPHILPSPQALVVTRV 60 Query: 70 TPQEARAKGENE-AAFAARIHSLFTVP-KTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 TP + F+ ++ +GYN ++FD+EV R FY+N + Sbjct: 61 TPDQLIDPSLPSLFEFSQQVAEFTERWAPAIWVGYNTMKFDEEVLRQTFYQNLSPNIYAT 120 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 + N+R+D+L + A Y P + WP +D G SF+L+ L ANG NAHDA+ DV Sbjct: 121 QFNGNTRFDILPAVYAAYVRHPGLLVWPTDDTGRRSFKLDRLAPANGFNAHNAHDALGDV 180 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 247 ATI +A+L+ TR P L+ L + +K ++ A ++ +P V+ FG + Sbjct: 181 EATIHIARLIATRSPALWSELIDNAHKARVQAKLE--SFRPYELVT-RFGGGEPRSYVGC 237 Query: 248 PLAWHPENRNAVIMVDLA-GDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKC 306 + N DL D S L + + + D ++ V NK Sbjct: 238 FCGYSHGNSAQAAFFDLDAADPSEFLGASDEAIFAAV--------DATPKIIRGVSTNKA 289 Query: 307 PVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAE---AEPFTPSDNV 363 P L + E L I+ P+ +V A A + P V Sbjct: 290 PALLEHTAPSAEH-----------LHRATIIANAPEFLRRVGAAMANRFVEDSDAPPKPV 338 Query: 364 DAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAE 423 + Q+Y F+S AD+ ++ + + D R+ +L A P L E Sbjct: 339 ERQIYGEFYSSADKQLLQEFQHATWPRRQEIVASLSDPRLRQLGRRLVAFYSPELLTADE 398 Query: 424 QQRWLEHRRQVFTPEFLQG 442 + + R ++ + Sbjct: 399 MALFKAYLRDKWSAPDVPE 417 >UniRef50_B9NSM4 Exodeoxyribonuclease I n=1 Tax=Rhodobacteraceae bacterium KLH11 RepID=B9NSM4_9RHOB Length = 469 Score = 335 bits (858), Expect = 3e-90, Method: Composition-based stats. Identities = 122/466 (26%), Positives = 206/466 (44%), Gaps = 32/466 (6%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F F D ET GT PA D+P QFA I TD + E C+ + LP P A+ +TG++ Sbjct: 2 FAFFDLETSGTSPAFDQPLQFAGILTDDTLEEV-ERIDIRCRLSPHILPAPWALAVTGVS 60 Query: 71 PQEARAKGENEA-AFAARIHSLFTVPKTC-ILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 P A F+ + SL GYNN+ FD+++ R +FY+N + + Sbjct: 61 PGMLSNPNLPSAFEFSQEVSSLIHRWGPATWTGYNNIAFDEQMLRQMFYQNLHPNLYLTQ 120 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 N R D++ ++ A + L + + WP ++ G +F+L+ L ANG +N HDA+ADV Sbjct: 121 MDGNDRMDIMKLVYATWVLANDALTWPTDEAGKITFKLDQLAPANGFVSNNFHDALADVE 180 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 ATI +AKL++ R P ++ +R+K+ + ++ Q+ L+ FGA A Sbjct: 181 ATINIAKLIRDRAPDVWVQSLRNRSKNNVQDIMQSGQVLTLI---ERFGATPPRAYRGAY 237 Query: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308 +P+NRNA+ ++DL +D +TL +A + + V+ V IN P Sbjct: 238 AGQNPDNRNALALMDLDL-------VDPNTLDPTDASAIANAVSASPKTVRTVAINNAPN 290 Query: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEA-EPFTPSDNVDAQL 367 L + + I+ L+ + LR N ++ + AE + D V+ ++ Sbjct: 291 LFE-----------VPIDDSDLLNRAEDLRGNHDLQTALGNALAERFADRSEPDQVEQKI 339 Query: 368 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 427 Y GF+S D+ + + F D+R++ L N P L Q W Sbjct: 340 YAGFYSTDDKKRLNQFEFASWAKRIEIAQAFEDRRLQWLASRLIYLNEPSLLSRYAQDYW 399 Query: 428 LEHRRQVFTPE-------FLQGYADELQMLVQQYADDKEKVALLKA 466 + Q + + ++ + +L + Q + LK Sbjct: 400 KDAIDQRWQNDDPNPEWTTIEHASRQLAEIADQGVLSIHDLQALKE 445 >UniRef50_C0QKN8 SbcB n=1 Tax=Desulfobacterium autotrophicum HRM2 RepID=C0QKN8_DESAH Length = 471 Score = 333 bits (855), Expect = 6e-90, Method: Composition-based stats. Identities = 140/477 (29%), Positives = 209/477 (43%), Gaps = 43/477 (9%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 TFLF+D ET G +PA D+ FAAIRTD E I +D +P PGA + Sbjct: 2 KTFLFYDIETSGLNPAFDQILTFAAIRTDLELREIDRT-SIVISLRNDIVPSPGAFITHR 60 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 +TP++ + G E A IH L P T +GYN++ FDDE R FYRN DPY + Sbjct: 61 LTPEDLKD-GLCEYQGVALIHRLLNTPDTISIGYNSLGFDDEFLRFAFYRNLLDPYTHQY 119 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGI-EHSNAHDAMADV 187 +D +R DLL + +P+GI+WP DD S RLE +++ N + + AHDAM DV Sbjct: 120 ANDCARMDLLPIATLYRIFKPDGIHWPVIDD-KASMRLELISEKNNLVQSGRAHDAMTDV 178 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALID---------VPQMKPLVHVSGMFGA 238 AT+A+A+ + Q R+++Y +K A +D + + + VS FG+ Sbjct: 179 EATLALARRLSG-QKRMWNYCLDFFDKKNDQARLDAVDEVFQSIFGRHRLCIMVSVSFGS 237 Query: 239 WRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPV 298 + V L N + + L +E + K D GD V Sbjct: 238 DLTYMAPVLSLGHSTPYANQSLWLRLD--------------KELVLPFKPDSGDGPFVLR 283 Query: 299 KLVHINKC--PVLAQ-ANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAE 355 K K P L + N L P Q C N+ +L+ N +K+V + Sbjct: 284 KRYGEAKIVLPSLDRFWNRLTPS-------QHQVCEKNIAMLKANQDEFQKLVIHHRSFK 336 Query: 356 -PFTPSDNVDAQLY-NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRAR 413 PF P ++DA LY +GFFS ++ M + + T V R++ L R Sbjct: 337 YPFVPDLDLDASLYQDGFFSSVEKKEMGVFHRAINNGEMGVCETLVSPRVKGLAQRIVLR 396 Query: 414 NF---PGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 NF A R++ R + ++GY ++L+ A + V + L Sbjct: 397 NFYEQAAPEVRAGHDRYMVKIRGPLGDDPVKGYRNDLKFTCDMAAQELASVRSAQGL 453 >UniRef50_A4IYM7 Exonuclease n=19 Tax=Francisella RepID=A4IYM7_FRATW Length = 482 Score = 316 bits (809), Expect = 1e-84, Method: Composition-based stats. Identities = 122/504 (24%), Positives = 197/504 (39%), Gaps = 68/504 (13%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 T LF+D ET G + + D+ QFAAIRTD +FN I F+ K D P P A Sbjct: 1 MFSNQTLLFYDLETSGINNSFDQVLQFAAIRTDLDFNEIERF-NFFVKLNPDTTPSPMAT 59 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 + I+ +A G E +IH + P T +GYN + FDDE R FY+N PY Sbjct: 60 ITHHISIAQA-NTGIAEYQAIRKIHKIINAPGTISIGYNTLGFDDEFLRFAFYKNMLPPY 118 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFR-----LEHLTKANGIEHSN 179 + +++ SR DL ++ Y E +NWP+ D + N Sbjct: 119 SHQFKNGCSRADLFPIVTCYYLFCNEVLNWPKAIDEGGQEKTSLKLENLNQNNNLYSGGR 178 Query: 180 AHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMA---LIDVP------QMKPLV 230 AHDA+ DV T+ +AK ++ P+++ +L NK +DV + K + Sbjct: 179 AHDAITDVIVTVELAKKLRAANPKMWQFLLAKFNKQNDENTLTQLDVGLEVGDRKYKQAI 238 Query: 231 HVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVDLA----GD-ISPLLELDSDTLRERLYT 285 VSG+FG+ S + L H +N I + L D I L+++ R L Sbjct: 239 AVSGIFGSKNNFISAILDLGQHRHYKNQEIFLRLDSCLFSDFIDEFGSLEAEHWRLTLNK 298 Query: 286 AKTDLGDNAAVPVKLVHINKCPVLAQANT--LRPEDADRLGINRQHCLDNLKILRENPQV 343 D+ P++ A T + +R+ + N + +R NP+ Sbjct: 299 KWGDI----------------PIILPAKTRFVGKLPQERIEL----IKANKEFIRNNPET 338 Query: 344 REKVVA-IFAEAEPFTPSDNVDAQLY-NGFFSDADRAAMKIVLET----EPRNLPALDIT 397 V + P + + DA +Y + F S AD + + L L + Sbjct: 339 FANFVEYVLEYKYPEIENIDTDAAIYQSDFMSMADERGCDKFHSLAITQKAQMLNQLPKS 398 Query: 398 FVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPE--------------FLQGY 443 + D+ R L Q + ++ ++ + + L+ Sbjct: 399 YYDR-----AVRIIGRLDFSKLPAKAQIEFQDYLNKIVSLDSDELLIDHKGKTRKTLEDI 453 Query: 444 ADELQMLVQQYADDKEKVALLKAL 467 E++ L Y +E+ ALL L Sbjct: 454 YQEIEDLRMNYDLTEEQQALLYEL 477 >UniRef50_Q07NS2 Exodeoxyribonuclease I subunit C n=5 Tax=Alphaproteobacteria RepID=Q07NS2_RHOP5 Length = 490 Score = 309 bits (791), Expect = 2e-82, Method: Composition-based stats. Identities = 102/449 (22%), Positives = 174/449 (38%), Gaps = 24/449 (5%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F+F D ET G D+ FAAIRTD++ N E + +P P A+ ++ Sbjct: 3 FVFFDTETTGLRHGFDQIVHFAAIRTDNDLNETDRFE-VRSRLLPHVVPHPSALRTNRLS 61 Query: 71 PQEARA-KGENEAAFAARIHS-LFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 + + I L + +GYN++RFD+E+ R+ ++ + Y S Sbjct: 62 IERLIDGTLPSHYEMVRAIQRTLLAWSPSIFVGYNSIRFDEEMLRHALFQTLHPAYLTS- 120 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 + N R D L ++ A L P + P +G P FRL+ L N ++H AHDAMADV Sbjct: 121 NNGNCRADALGLIMAAATLSPACLVVPLGPEGRPIFRLDQLASVNDLKHDQAHDAMADVA 180 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 AT+ + +LV+ R P L+ K + ++ ++ F + V Sbjct: 181 ATLDLCRLVRERAPELWQRFIRFSKKATVGDFVESEDG---FFLTEFFSNQ-AYHAPVVC 236 Query: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308 L P+ N + + L L + + L+ L PV+ + IN P Sbjct: 237 LGPDPDQPNGRLCLRLDVPPEELALMPDEALQAYLSAK--------PSPVRRLRINASPT 288 Query: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIF-AEAEPFTPSDNVDAQL 367 L + D G + D + L+E+ R ++++++ A E F PS +V+ Q+ Sbjct: 289 LTAFH--DAPDLMLNGADLDELEDRARRLKEDAAFRSRIISLYVAVRESFAPSLHVEGQI 346 Query: 368 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 427 Y+G D + E ++ D+R+ L + Sbjct: 347 YDGLLGPDDERRIADFHEASWLEALSIVRDLDDERLRIFGRRLIYFGGRSVLPSDLKLIV 406 Query: 428 LEHRRQVF-----TPEFLQGYADELQMLV 451 LQ +E + L+ Sbjct: 407 ERDLTDRLVDNAAGNFTLQQALEETERLL 435 >UniRef50_A4GJC0 Exodeoxyribonuclease I n=1 Tax=uncultured marine bacterium EB0_49D07 RepID=A4GJC0_9BACT Length = 469 Score = 298 bits (763), Expect = 3e-79, Method: Composition-based stats. Identities = 91/475 (19%), Positives = 178/475 (37%), Gaps = 32/475 (6%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 S +F+D ET G + Q +I+T+ ++ E + C P +P P A+ Sbjct: 1 MSVSSNLIFYDTETTGLLKDFSQILQCGSIQTNRSLEILHE-QNLGCAPLPWAIPYPMAM 59 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVP----KTCILGYNNVRFDDEVTRNIFYRNF 120 + T + ++ + + +N + +D+E+ R FY N Sbjct: 60 VTNKKTN--LFHSNVSHYELMRDLNRQWRQWTIDEPAVFITFNGMAYDEELVRRQFYWNL 117 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG-LPSFRLEHLTKANGIEHSN 179 ++ Y + + N R D+L +M A P+ +N P D G S + + +ANGIE + Sbjct: 118 FESYLTN-TNGNGRLDILLMMNNVAAFSPDVLNIPLFDGGPGISLKQADIAEANGIEIGD 176 Query: 180 AHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAW 239 AHDA+AD I + + + ++P L D+ + K + A ++ P L V + Sbjct: 177 AHDAIADCKLMIGLLEKINAKKPELIDFFLSISTKPGIQAAVEHPGFLALGEV------F 230 Query: 240 RGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVK 299 R + + N ++ DL+ + + E+D+ + + + P K Sbjct: 231 RREIFKYPVVPCGSKAPNDLMFFDLSFEPEEIFEMDTQEIYSLVQKP------GKSGPFK 284 Query: 300 LVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEA--EPF 357 INK + ++ + +D I+ + +REN + V A+ Sbjct: 285 KYGINKTIPVCPSSMIDNKDI--FDIDFEVLEKRAAQVRENTDFQALVSQAMADKIDNWN 342 Query: 358 TPSDNVDAQLY-NGFFSDADRAAMKIVLET-EPRNLPALDITFVDKRIEKLLFNYRARNF 415 D+++ +Y GF S D+ M + D+R + + Sbjct: 343 NEYDHIEQMIYAGGFPSKQDKELMADFHRIDSAEERIKICRNITDERHRLFAERLICQFY 402 Query: 416 PGTLDYAEQQRWLEHRRQVFTPE----FLQGYADELQMLVQQYADDKEKVALLKA 466 P R+ Q + + EL+ L+++ + E +L+ Sbjct: 403 PQEAPEDMMNRYQSLITQRLNEDGPWGSMSKVMTELEKLLEK-DNSTETQTILED 456 >UniRef50_C0B120 Putative uncharacterized protein n=2 Tax=Enterobacteriaceae RepID=C0B120_9ENTR Length = 274 Score = 297 bits (760), Expect = 6e-79, Method: Composition-based stats. Identities = 156/265 (58%), Positives = 207/265 (78%), Gaps = 1/265 (0%) Query: 204 LFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHPENRNAVIMVD 263 +FDY F R+K K+ ALID+P M P+VHVSGMFGA R N S VAPLAWHP+NRNAVI+ D Sbjct: 1 MFDYFFNLRDKRKVQALIDIPAMTPIVHVSGMFGAARSNLSLVAPLAWHPDNRNAVIVCD 60 Query: 264 LAGDISPLLELDSDTLRERLYTAKTDLG-DNAAVPVKLVHINKCPVLAQANTLRPEDADR 322 L+ DISPLL L SD LRERLYT +++L D VP+KL+HINKCP++A NTLRP+DADR Sbjct: 61 LSADISPLLTLTSDQLRERLYTPRSELAVDEPPVPIKLLHINKCPIVAPQNTLRPQDADR 120 Query: 323 LGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKI 382 +G++ CL+N IL +P++R KVV +FA+ PF SD+VD+Q+YNGFFS+ DR+AM+I Sbjct: 121 IGLDVDTCLNNQAILFSHPEIRNKVVELFAQQTPFVVSDDVDSQIYNGFFSENDRSAMEI 180 Query: 383 VLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQG 442 + T+P+NLPALD+TF D R+E L F YRARN+P TL+Y EQQRWL HR+++ TPE L Sbjct: 181 IRSTQPQNLPALDLTFEDARMEPLFFRYRARNYPSTLNYDEQQRWLAHRKEMLTPEKLNE 240 Query: 443 YADELQMLVQQYADDKEKVALLKAL 467 Y + +Q+L ++Y+D++EK+ L+ L Sbjct: 241 YINTIQLLAEKYSDNEEKLKQLQEL 265 >UniRef50_B4WCZ9 Exonuclease family n=1 Tax=Brevundimonas sp. BAL3 RepID=B4WCZ9_9CAUL Length = 476 Score = 291 bits (744), Expect = 5e-77, Method: Composition-based stats. Identities = 100/404 (24%), Positives = 170/404 (42%), Gaps = 20/404 (4%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F+F+D ET G D+ QFAAI TD + N + E C+ +P P A+L ++ Sbjct: 3 FVFYDTETTGLSKGFDQIVQFAAIHTDGDLNELDRFE-LRCRLQPHVVPHPKAMLANRLS 61 Query: 71 PQEARA-KGENEAAFAARIHSLFTVPK-TCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 + + I + +GYN++RFD+E+ R+ F++N + Y S Sbjct: 62 IERLTDLSLPSHYDMVREIRRRLSGWGRGIFIGYNSIRFDEEMLRHAFFQNLFPAYLTS- 120 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 R D + ++ A + P DG +FRLE + ANG+ AHDAMAD Sbjct: 121 TPGCGRADAMHIVLTACADASACLTLPLAADGRKTFRLEAVAAANGLNVDAAHDAMADAQ 180 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 T+A+ + V + P ++ NK + L+ +PL ++ +G + + VA Sbjct: 181 MTLALCRRVASEAPEIWSRAIRTSNKAAVADLV---ASEPLFILTEFYG-FEASHRVVAC 236 Query: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPV 308 L N N + DLA D + ++L +D L + + P++ + N P Sbjct: 237 LGPEAGNPNGRLCWDLASDPAEAVQLQTDDLAALISQRE--------GPLRRLKTNAAPA 288 Query: 309 LAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTP-SDNVDAQL 367 +A + PED + + L+ NP++ +++ A +P S +V+ QL Sbjct: 289 IAMSWDA-PEDWALG--DVDEAERRAEWLQANPELSSRIIEAQAARWANSPLSPHVELQL 345 Query: 368 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYR 411 Y+ F D D M + +F D R+ Sbjct: 346 YDRFPDDDDLRLMADFHGAPKIRQREIVDSFADVRLRTFGRRLL 389 >UniRef50_Q4FND4 Exodeoxyribonuclease I n=2 Tax=Candidatus Pelagibacter ubique RepID=Q4FND4_PELUB Length = 475 Score = 288 bits (738), Expect = 2e-76, Method: Composition-based stats. Identities = 94/489 (19%), Positives = 177/489 (36%), Gaps = 60/489 (12%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 D E+ + + + I D F + F C+ + +PQ A+++ Sbjct: 2 NLAIWDIESSSANTSWGSIIEVGGILVDPNFKELDRF-NFRCRLPEGEVPQAMALIVNKT 60 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKT-CILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 + + +++ + F +G++N+ FDDE+ RN F+R PY + Sbjct: 61 SVDLLTKGNLSHYQMLSQLEATFKKWSPAMFMGWSNIGFDDEMIRNEFFRGIRYPYITN- 119 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 N R D L+++R +A+ + N G +LE L + NG E S AH A+ D Sbjct: 120 ATPNKRHDGLNIVRGAHAVDESVVKTEINAKGNAVMKLESLARMNGFESSGAHSALFDAE 179 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 T+ + L+K QP+ +D NK + +M L + + VAP Sbjct: 180 LTVKVLGLIKKNQPQTWDTFLRTANKSDTETIFKTEKMFTLAE----YHFGKNYRFVVAP 235 Query: 249 LAWHPENRNAVI-----MVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHI 303 L HP++ I DL D PL ++ L+ + K ++ + Sbjct: 236 L--HPKHCIHPIYQWGQAFDLKIDPIPLFDMSISELKSAIKKLKF---------LRTIRS 284 Query: 304 NKCPVLAQANT-LRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDN 362 NK P++ A+ L+ E ++ + K++ N + + V+ E + Sbjct: 285 NKAPIILDASYGLQVEPYS--NLDPDLIKERAKLVNSNERFSQNVLTALRETAEEKAQFD 342 Query: 363 ------VDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKR-------------- 402 + +Y F D A ++ L F D+R Sbjct: 343 SQVDLLAEETIYKKFTPQKDTALFPKWHAASWKDKLILLDKFEDERMVSFGKKIIYQESP 402 Query: 403 --IEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYAD--DK 458 + +F R + E+++W + + E L +Y + D+ Sbjct: 403 ETLPPDMFKTIKRGIAERILSDEKEKW----------WTCKEFYFECDNLRDRYTNEKDE 452 Query: 459 EKVALLKAL 467 +K+ L + Sbjct: 453 KKLKFLDEI 461 >UniRef50_B6BR92 Exodeoxyribonuclease I n=1 Tax=Candidatus Pelagibacter sp. HTCC7211 RepID=B6BR92_9RICK Length = 481 Score = 276 bits (705), Expect = 2e-72, Method: Composition-based stats. Identities = 86/464 (18%), Positives = 169/464 (36%), Gaps = 34/464 (7%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 ++ D ET + I D F + C+ D +P A+ I Sbjct: 2 KYVVWDIETDSAQTDWATIIEIGGILLDENFKELERF-SARCRMPQDRVPSATALCINKS 60 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTC-ILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 + +++ + F LGY+++ FDDEV R F+++ PY + Sbjct: 61 NVDLLTKGNLSHYEMLSQVENKFKEWSPATFLGYSSINFDDEVIRKEFFKSLRKPYLTN- 119 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 N R D L++++A +A+ + + N G S +LE L + NG E + AH A+ D Sbjct: 120 TEGNVRHDALNIVKAAFAIDDDILKTELNAKGNKSMKLESLARLNGFESAGAHSALFDTE 179 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 T+ + L+K +QP ++ +K + LI ++ ++ F + AP Sbjct: 180 LTVKVLDLIKKKQPDIWTEYLKTSSKVVVENLIKQEN---IITLNEYFYG-KSYLYLCAP 235 Query: 249 L----AWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHIN 304 L HP + ++ DL DI + +L+ + L++ + + ++ V N Sbjct: 236 LHPNFCSHPVYKWGQVV-DLKADIEAIQKLNYEDLKKEMKKS--------PKFLRTVKSN 286 Query: 305 KCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFT------ 358 K P++ + D + ++ ++++ N + + + I EA Sbjct: 287 KAPIILDKSFALKVDPYK-KLDSSLINKRAELVKTNEKFSKDISNILREAAEEKIETSSQ 345 Query: 359 PSDNVDAQLY-NGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPG 417 + +Y GF S D+A + + AL F D+R+ P Sbjct: 346 EDIEPEESIYSGGFTSAKDQALFPKFHNSNWKEKFALLDKFEDERLITFGHGLIFNEAPE 405 Query: 418 TLDYAEQQRWLEHRRQVFTP------EFLQGYADELQMLVQQYA 455 L ++ + + E + + Sbjct: 406 ILPKEIHKKIKRRIASRILSTNKEKWWTVSAFYSECDEIRENED 449 >UniRef50_A1ZTJ0 Exodeoxyribonuclease I, putative n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZTJ0_9SPHI Length = 487 Score = 272 bits (696), Expect = 2e-71, Method: Composition-based stats. Identities = 107/476 (22%), Positives = 179/476 (37%), Gaps = 42/476 (8%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 + +F+D + G +P D+ + TD FN++ E K D +P P A+ Sbjct: 17 MIKNKNLVFYDTRSSGDNPVFDQILRADTYVTDHAFNLL-ETHHIEIKKRPDVVPSPEAL 75 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 + P + AKG E IH LF P + +GY N+ DD + R FYRN PY Sbjct: 76 IANNWLPSDL-AKGSTEYEAMRHIHELFNTPHSYNVGYGNLNNDDLLVRFGFYRNGLTPY 134 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 WQ R DL ++ Y P + + +N G S L+ + +ANG+ Sbjct: 135 THQWQRSCRRVDLRTIVTLYYLQAPNALVFSKNAAGKVSLELDDIAQANGLTVG---KGA 191 Query: 185 ADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMK-----PLVHVSGMFGAW 239 + + +AKL+ P L++ +K + + Q + + V GA Sbjct: 192 TNAQTIMELAKLLHNANPMLWEQALGFFDKKEDQNRVKAAQGQIEGVNGALLVDAQLGAD 251 Query: 240 RGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVK 299 G V L ++ + V + D L L++ L R + K L D + Sbjct: 252 AGFQQPVHVLGQVGKDVHYVPL-----DDPDLSTLNTKNLESRFWVQKKKLTDEKLL--- 303 Query: 300 LVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTP 359 L ++ P + DA R + N + NP + +++ + + F Sbjct: 304 LNWKHRDPAVF--------DAARGAL----IKRNAAFVANNPNLMQQLGE-YVAGKSFAH 350 Query: 360 SDNV--DAQLY-NGFFSDADRAAMKIVLETE-PRNLPALDITFVDKRIEKLLFNYRARNF 415 +NV DAQLY GF++ ++ E + + T +R + RNF Sbjct: 351 RNNVDLDAQLYQGGFWATNEKRFFAEFHEAPNAQEKMQVVNTAPTQRTAAIGQRILYRNF 410 Query: 416 PGTLDYAEQ-QRWLEHRRQVFTP----EFLQGYADELQMLVQQYADDKEKVALLKA 466 + W P L+ Y + ++++ D E ALL A Sbjct: 411 VHDMGALGMTTDWQRFIADSVAPVSDLATLKDYKGGRKRSIERFLADAE--ALLNA 464 >UniRef50_A4V7F6 Putative exodeoxyribonuclease n=1 Tax=Pseudomonas fluorescens SBW25 RepID=A4V7F6_PSEFS Length = 465 Score = 255 bits (652), Expect = 2e-66, Method: Composition-based stats. Identities = 88/458 (19%), Positives = 163/458 (35%), Gaps = 36/458 (7%) Query: 13 FHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQ 72 F+D T G PA + ++ ++ + + + + A Sbjct: 7 FYDAITAGKSPAEGQIVRYDSLMCEESLTPQVMEMMVGLRSDVHVDLEAAA---NSELGS 63 Query: 73 EARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDN 132 G +E A +H FT P +G N D R+ FYRN P+ N Sbjct: 64 MDLLSGHSELECARTVHRHFTRPNCLHIGLGNTTRVDPFLRSTFYRNLL-PFPCIGLPGN 122 Query: 133 SRW-DLLDVMRACYALRPEGINWPENDDGLPSFRLEHLT--KANGIEHSNA---HDAMAD 186 S + DL ++RA LRP+ W ++ D + H AN + A D +AD Sbjct: 123 SYYLDLETMLRAINILRPDEYPWADSPDPTNTQSFHHFLMWGANVSGENRAVRLRDLLAD 182 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALI--------DVPQMKPLVHVSGMFGA 238 +A+ P+L + H + + + + D+ P+ V A Sbjct: 183 THASC----------PKLVGHALKHSSLQSIKSALGLEQGEVSDLESATPVYLVHQSLQA 232 Query: 239 WRGNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPV 298 +G P+ + + + DL DIS L + + + ++ P+ Sbjct: 233 PKGFI-LGLPVGVDITYPDILYVADLESDISQLCNPAITSYQSFVRNPSSN----PNGPL 287 Query: 299 KLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFT 358 + +++ P A + +RP DA RL I+ + LR + ++ Sbjct: 288 VRISLSRFPFCAPLSAIRPADAARLSIDIGLVKRRIAQLRSATLLPSRLKETPVLHLSSQ 347 Query: 359 PSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGT 418 PS +V +++ G FS D+ M+ + + L + D RI +L+ P Sbjct: 348 PS-DVFHRMWAGDFSPKDQVLMQELHQAPMGEWLNLAVGASDGRIYELVVRLLGGIAPEI 406 Query: 419 LDYAEQQRWLEHRRQVFTPEFLQGYADELQMLVQQYAD 456 L ++ + + F+ + L++Q D Sbjct: 407 LTSDQRSEVDGYTQSRFSKNSAPPLW--VAELLKQAQD 442 >UniRef50_UPI0001911F1B exonuclease I n=1 Tax=Salmonella enterica subsp. enterica serovar Typhi str. M223 RepID=UPI0001911F1B Length = 228 Score = 253 bits (645), Expect = 1e-65, Method: Composition-based stats. Identities = 203/220 (92%), Positives = 211/220 (95%) Query: 248 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCP 307 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAK DLGD+AAVPVKLVHINKCP Sbjct: 1 PLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKADLGDHAAVPVKLVHINKCP 60 Query: 308 VLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQL 367 VLAQANTLRPEDADRLGINRQHCLDNLK+LRENPQVR+KVVAIFAEAEPF SDNVDAQL Sbjct: 61 VLAQANTLRPEDADRLGINRQHCLDNLKVLRENPQVRDKVVAIFAEAEPFATSDNVDAQL 120 Query: 368 YNGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDYAEQQRW 427 Y+GFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLD AEQQRW Sbjct: 121 YDGFFSDADRAAMKIVLETEPRNLPALDITFVDKRIEKLLFNYRARNFPGTLDDAEQQRW 180 Query: 428 LEHRRQVFTPEFLQGYADELQMLVQQYADDKEKVALLKAL 467 LEHRRQV TPEFLQ YA+ELQML QQYA+DK K+ LLK+L Sbjct: 181 LEHRRQVLTPEFLQQYANELQMLSQQYAEDKTKLGLLKSL 220 >UniRef50_A2R5F8 Remark: it is assumed (Fragment) n=1 Tax=Aspergillus niger CBS 513.88 RepID=A2R5F8_ASPNC Length = 298 Score = 234 bits (598), Expect = 4e-60, Method: Composition-based stats. Identities = 175/178 (98%), Positives = 175/178 (98%) Query: 36 TDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVP 95 EFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVP Sbjct: 121 FKGEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVP 180 Query: 96 KTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWP 155 KTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWP Sbjct: 181 KTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWP 240 Query: 156 ENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRN 213 ENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRN Sbjct: 241 ENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRN 298 >UniRef50_C5B4J5 Putative Exodeoxyribonuclease I n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B4J5_METEA Length = 491 Score = 231 bits (590), Expect = 4e-59, Method: Composition-based stats. Identities = 95/413 (23%), Positives = 167/413 (40%), Gaps = 35/413 (8%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 + D ET T + FAA+ ++ V + +P GA+ + Sbjct: 8 DVVCWDTETSDTDVRHGQIFDFAAVTSNLTDLVETGTRTVRIRRLSYCIPAYGALSTNRL 67 Query: 70 TPQEARAKGEN-EAAFAARIHSLFTVPKT---CILGYNNVRFDDEVTRNIFYRNFYDPYA 125 P A E + AA IH + + +LGYN + FD+E+ R F+RN DPYA Sbjct: 68 DPYALEATDRTDEFSAAASIHGILSPKPGRPLVVLGYNILSFDEEIVRTTFFRNLLDPYA 127 Query: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMA 185 S + R+DLL R +AL P+ ++DDG PSFRLE + ANGI AHDA+ Sbjct: 128 TSAK-GVRRFDLLPAARLAHALDPDAFPAGQDDDGGPSFRLERIAPANGIGL-RAHDALE 185 Query: 186 DVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMK--PLVHVSGMFGAWRGNT 243 D AT+A+A+ +++ P ++ ++++ + D + P+ ++G GN Sbjct: 186 DARATLALARRLRSSVPAAWETCLRASDRYEAERVFDAAAARNEPVWVLAG------GNA 239 Query: 244 SWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHI 303 + P +N ++++ + ++ +++ +D L DL D Sbjct: 240 PVLEPAYPVGKN-GRLLVLARSSRLAESMQIGADAL---------DLDDWRDGSFIRCRT 289 Query: 304 NKCPVLAQANT------LRPEDADRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPF 357 N+ PV+ A L P + + + + +V +P Sbjct: 290 NRMPVVLSAAAAAVLSELHPGAFPVPPGDVRAPGAGWSEFKGA--LASRVADADPWTKPT 347 Query: 358 TPSDNVDAQLYNGFFSDADRAAMKIVLET-EPRNLPALDITFVDKRIEKLLFN 409 P+ + ++Y+GF ++ M+ A F D RI + Sbjct: 348 GPT--AEERIYDGFVDWGEKDRMRHFRYLGTWEERAAAFAGFRDSRIREFAAR 398 >UniRef50_C0FNH3 Putative uncharacterized protein n=2 Tax=Firmicutes RepID=C0FNH3_9FIRM Length = 228 Score = 171 bits (434), Expect = 4e-41, Method: Composition-based stats. Identities = 45/248 (18%), Positives = 75/248 (30%), Gaps = 36/248 (14%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 ++ D ET GT D + +A++ V+ E A ++ Sbjct: 15 PDYVLFDLETTGTSCIYDEVIEISAVKVR-SGKVVEEFSQL---VNPKRPIPYAASMVNH 70 Query: 69 ITPQEARAKGENEAAFAARIHSLFT-VPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 I+ + E F + T ++G+N FD + R F Sbjct: 71 ISDEMVAN----EPDFGQVLPEFLTFAGDDILVGHNIQTFDMKFLYRDCERLF------Q 120 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 + N D L V + C+ RL L + GI AH A+ D Sbjct: 121 QKLTNDYVDTLRVAKLCFP-------------EWRHRRLSDLAEHYGISTRGAHRALTDC 167 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 247 + + + + K + I P+ +G FG + G + Sbjct: 168 KMNQQVFEYLAKELEK------MPAAKKQSKEKICPECGLPMKKRNGRFGEFWGCIGY-- 219 Query: 248 PLAWHPEN 255 P H EN Sbjct: 220 PDCRHTEN 227 >UniRef50_Q0SVV0 Helicase/exonuclease n=12 Tax=Clostridium RepID=Q0SVV0_CLOPS Length = 870 Score = 159 bits (401), Expect = 3e-37, Method: Composition-based stats. Identities = 50/322 (15%), Positives = 113/322 (35%), Gaps = 41/322 (12%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 ++ + ++ + D E+ G D Q AAI+ + V+ + E F Sbjct: 494 LLINEFEKENIIVFDVESTGVDVTEDEIIQIAAIKLNKNVEVVDKFEKFLKNKKS----V 549 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 + + G + + + GE + + I+G+N V++D + + RN Sbjct: 550 KDSYYVHGFSDEMLQRIGEEKEKVLKEFVEY--SKDSIIVGHN-VQYDINILCSELERNN 606 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 + +D LD+ R Y G +++LE+L+K +H + Sbjct: 607 L-----GKPKFKTFYDTLDIYRRFYP-------------GNINYKLENLSKVYDTKHKPS 648 Query: 181 HDAMADVYATIAMA-KLVKTRQPRLFDYLFTHRNKH-----KLMALID-----VPQMKPL 229 HDAM D+ AT + + + + +KH + ++ + +P Sbjct: 649 HDAMDDIIATGELLVRAINEKIKETSMERMALMSKHLKAFTAISKKLNELFQIAERKRPY 708 Query: 230 VHVSGMFGAWRGNTSWVAPLAWHPENRNAVI--MVDLAGDISPLLELDSDTLRERLYTAK 287 V+ + G + + + + L D+ + + D L + + Sbjct: 709 ELVACVI---NGFNIKSMYAGDENKEKLNRLRDLYALFRDLDDKSKGNRDALLDIIRITG 765 Query: 288 TDLGDNAAVPVKLVHINKCPVL 309 G+ ++ + + P++ Sbjct: 766 LSNGELESLIINRTKKPRIPII 787 >UniRef50_A7B5W2 Putative uncharacterized protein n=1 Tax=Ruminococcus gnavus ATCC 29149 RepID=A7B5W2_RUMGN Length = 219 Score = 156 bits (394), Expect = 2e-36, Method: Composition-based stats. Identities = 37/234 (15%), Positives = 69/234 (29%), Gaps = 39/234 (16%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 + D ET G +D + +A++ ++ + P A + G Sbjct: 13 PDYTVFDLETTGISANMDDIIEISAVKVKGG--IVQDTFSTLVNPGRH--IPAQATKVNG 68 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 IT Q ++G+N FD + YR + + + Sbjct: 69 ITDQMVSEAPLI-REAMTEFLRFVGED--ILVGHNIQSFDMKFI----YREVEELFQETV 121 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 + D +D + PE L RL L + GI AH A+ D Sbjct: 122 SN-----DFIDTLYMARKCLPE----------LKHHRLTDLAEHFGISSKGAHRALNDCV 166 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGN 242 + F+ + + K + ++ +G +G + G Sbjct: 167 M-----------NQKCFEEMAKLQKKSVVFVCPKCGGE--MIRRNGRYGEFWGC 207 >UniRef50_C7GFC6 DNA polymerase III, alpha chain n=1 Tax=Roseburia intestinalis L1-82 RepID=C7GFC6_9FIRM Length = 226 Score = 155 bits (392), Expect = 3e-36, Method: Composition-based stats. Identities = 38/247 (15%), Positives = 71/247 (28%), Gaps = 36/247 (14%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 ++ +D ET G D + +A++ ++ E A + Sbjct: 15 RDYVLYDLETTGISSLYDEVIEISAVKVR-NGKIVDEFSEL---VNPGRPIPYAASSVNN 70 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 I+ + E + + G+N FD + + F Sbjct: 71 ISDKMVENARSFEKVLPEFLAFA---GDDVLAGHNIAGFDMKFLYRDCEKYFG------Q 121 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 N D L + + C+ +L L + GI AH A+AD Sbjct: 122 TLTNDYIDTLAIAKLCFP-------------EWKHRKLSDLAEHYGISTKGAHRALADCR 168 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 + +L+ + + I L +G FG + G T + P Sbjct: 169 MNQQVFELMAKES--------GGTSAKQTEEKICPRCGLALKKRNGRFGGFWGCTGF--P 218 Query: 249 LAWHPEN 255 + +N Sbjct: 219 DCRYTKN 225 >UniRef50_A7HNS3 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae RepID=A7HNS3_FERNB Length = 1390 Score = 154 bits (389), Expect = 6e-36, Method: Composition-based stats. Identities = 51/238 (21%), Positives = 83/238 (34%), Gaps = 33/238 (13%) Query: 1 MMND---GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDY 57 MMN+ T++ D ET G +P D + A++T + VI E F +P Sbjct: 370 MMNEIEGNVDDYTYVVLDLETTGLNPRSDEIMEIGAVKTR-DGKVIDEFHTF-VRPNK-- 425 Query: 58 LPQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFY 117 ++ ITGIT + + L K IL +N FD +NI Sbjct: 426 -LNKKSLNITGITEDMLKDAP----DIMQVLPKLLEFIKDSILVAHNADFDMTFLKNILS 480 Query: 118 RNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEH 177 ++ + +D +R AL I SF L+ L G+ Sbjct: 481 KSGIEFNP----------PYIDTLRLSQALLRNKI---------KSFSLDKLVDHFGLGA 521 Query: 178 SNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNK--HKLMALIDVPQMKPLVHVS 233 H A+ D T+ + + + F NK + L+ PQ ++ + Sbjct: 522 FQHHRALDDARVTVNVFWKLIELAKKKSITTFEKLNKLVENINPLVKHPQHVTVLVRN 579 >UniRef50_P47277 DNA polymerase III polC-type n=2 Tax=Mycoplasma RepID=DPO3_MYCGE Length = 1451 Score = 146 bits (369), Expect = 1e-33, Method: Composition-based stats. Identities = 48/271 (17%), Positives = 83/271 (30%), Gaps = 33/271 (12%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 62 N +TF+ D ET G H D +F+A + + + + D Sbjct: 408 NTKLSDATFVIFDIETTGLHGRYDDVIEFSARKIKNNSEIDHQQFFLKI----DKPIPKT 463 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 IT IT + G ++ +I + ++ +N + FD + F + Sbjct: 464 ITEITKITDEMLEG-GIDQQQGLEKIRNYL--DDCVMVAHNGINFDLPFLQTQFEKYNIK 520 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA-- 180 P L+D + +AL P S L ++ +E + Sbjct: 521 PLTNP---------LIDTLCLSWALNP----------LFSSHTLSNICSKLKLEFDDERL 561 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLF-----THRNKHKLMALIDVPQMKPLVHVSGM 235 H A D A + K + + K ++ + V +V+V Sbjct: 562 HRAEYDTEALKKVFFYFKKQLKEMGINTLTEIDQNLNKKCQIDLMKRVFTNTAIVYVKNQ 621 Query: 236 FGAWRGNTSWVAPLAWHPENRNAVIMVDLAG 266 G L H NR V+ LA Sbjct: 622 RGFQNLYEMLSIALTDHNANRPLVLASSLAK 652 >UniRef50_A5IJJ8 DNA polymerase III polC-type n=7 Tax=Thermotogaceae RepID=DPO3_THEP1 Length = 1367 Score = 145 bits (367), Expect = 3e-33, Method: Composition-based stats. Identities = 40/244 (16%), Positives = 77/244 (31%), Gaps = 33/244 (13%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 + + +TF+ D+ET G P +D + A++ + ++ E KP+ + Sbjct: 349 YDSSFENATFVVLDFETTGLDPQVDEIIEIGAVKI-QDGQIVDEYHTL-IKPSRE--ISR 404 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 + ITGIT + K E + I+ +N FD R + Sbjct: 405 RSSEITGITQEMLENKRSIE-EVLPEFLGFLE--NSIIVAHN-ANFDYRFLRLWIKKVMG 460 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 + + +D + +L + S+ L+ + + G+ H Sbjct: 461 LDWERPY---------IDTLALAKSLL-----------KMRSYSLDSVVEKLGLGPFRHH 500 Query: 182 DAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPL---VHVSGMFGA 238 A+ D T + ++ L ID +KP + V G Sbjct: 501 RALDDARVTAQVFLRFVEMMKKIGIT--KLSEIENLKDTIDYTALKPFHCTILVQNKKGL 558 Query: 239 WRGN 242 Sbjct: 559 KNLY 562 >UniRef50_D1VSB7 DNA polymerase III, alpha subunit, Gram-positive type n=1 Tax=Peptoniphilus lacrimalis 315-B RepID=D1VSB7_9FIRM Length = 1415 Score = 145 bits (366), Expect = 3e-33, Method: Composition-based stats. Identities = 43/235 (18%), Positives = 76/235 (32%), Gaps = 30/235 (12%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 N+ K +T++ D ET G P D+ + A++ + + L Sbjct: 392 YNENKSYNTYVVFDIETTGLSPIRDKITEIGAVKI-VDGIITERFSQL---INPQMLIPE 447 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 +T IT + E A + + + ++ +N +FD R +F N Sbjct: 448 KVQELTRITNALVENEPTIE-EVAPKFYDFI--KDSVLVAHN-AKFDTAFIRRVFKENDL 503 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 D N D L RA F L L K G+ AH Sbjct: 504 D-------FINPILDTLSFARAT-------------VKDTKKFNLATLCKKFGVSLVGAH 543 Query: 182 DAMADVYATIAMAKLVKTR--QPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSG 234 A+ D AT + + + P+ D+ + K ++ I ++ + Sbjct: 544 RAVNDAEATAHLFIKLINKIFDPKHIDFNKLNSLKSQIEPEILFESSLSILTKNE 598 >UniRef50_C1YUT4 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 RepID=C1YUT4_NOCDA Length = 595 Score = 145 bits (365), Expect = 4e-33, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 22/192 (11%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 ++F+ D ET GT + R + A+R V+GE L+TG Sbjct: 24 ASFVVLDLETTGTSASGSRITEVGAVRVR-GGEVVGEFATL---VNPGTPIPANITLLTG 79 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 IT + E + L P T ++ +N FD + R+ D Sbjct: 80 ITQSMVASAPPMEEVLPRLLAFLDAEPDTVLVAHN-APFDTGFLKAACERHGTD------ 132 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 + ++D +R A+ + RL L G+ + H A+ D Sbjct: 133 ---WPGYPVVDTLRLARAV--------LARGETRNHRLATLAAYFGVPVAPNHRALEDAR 181 Query: 189 ATIAMAKLVKTR 200 AT+ + + R Sbjct: 182 ATVGVLHGLVER 193 >UniRef50_C6LDW1 Helicase, RecD/TraA family n=4 Tax=Clostridia RepID=C6LDW1_9FIRM Length = 1010 Score = 144 bits (364), Expect = 5e-33, Method: Composition-based stats. Identities = 40/198 (20%), Positives = 64/198 (32%), Gaps = 28/198 (14%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 K + ++ D ET G D + +A++ ++ V GE P A Sbjct: 19 NKYVADYVVFDLETTGISSKYDEVIEISAVKVEAG-QVTGEFSTL---VNPGRKIPPAAS 74 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKT-CILGYNNVRFDDEVTRNIFYRNFYDP 123 + GIT + F+ + F ++G+N FD + + F Sbjct: 75 RVNGITDKMVAGALP----FSEVLGDFFAFAGDFVLVGHNINSFDMKFLYRDAKKYFRK- 129 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDA 183 DN D L + RA PE L RL L + GI AH A Sbjct: 130 -----VPDNDYVDTLLLARAA---LPE----------LSHHRLVDLAEHYGISAKGAHRA 171 Query: 184 MADVYATIAMAKLVKTRQ 201 + D + + + Sbjct: 172 LNDCHMNQKVYGKLAEEA 189 >UniRef50_C8WWI2 DNA polymerase III, alpha subunit n=2 Tax=Alicyclobacillus acidocaldarius RepID=C8WWI2_ALIAD Length = 1440 Score = 144 bits (363), Expect = 7e-33, Method: Composition-based stats. Identities = 37/230 (16%), Positives = 80/230 (34%), Gaps = 38/230 (16%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 ++ ++ D ET G + D + AA++ + ++ + P V +T Sbjct: 424 ETEYVVFDTETTGLNAREDTLIEIAAVKVKAG-QIVDTYATL---IDPERSLDPKIVELT 479 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 GIT + + + ++ +N FD R DP+ Sbjct: 480 GITNEMVAGQPK-LREALDGFRQFAR--GAVLVAHN-AEFDVGFLNQCAERLGLDPWEQP 535 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 ++D + L P G +++L+ LT+ ++ N H A+AD Sbjct: 536 ---------VIDTLALARVLYP----------GEKNYKLKTLTQKFSVDLVNHHRALADS 576 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFG 237 AT ++F ++ + L+D+ ++ + +S + Sbjct: 577 EATA-----------KVFVHMLKDAKARGIHNLLDMNHLRGQIDISRVRP 615 >UniRef50_Q2RJC1 DNA polymerase III, epsilon subunit n=1 Tax=Moorella thermoacetica ATCC 39073 RepID=Q2RJC1_MOOTA Length = 921 Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats. Identities = 41/192 (21%), Positives = 67/192 (34%), Gaps = 31/192 (16%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 T++ D ET G PA DR + AA+R N+ + + P +T Sbjct: 3 PQTYVVLDVETTGLDPARDRIIEIAAVRL-EGGNITRQFQTL---VNPGRPIPPAIERLT 58 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 GI+ R + + LF +G+N FD ++ P Sbjct: 59 GISDAMVR-EAPPLPEVLPGLLDLFR--DAIPVGHNG-TFDLAFLNQALGHGWHSP---- 110 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 LLD + L P L S RL++++K +E + H A+ DV Sbjct: 111 ---------LLDTLALSRILFP----------CLASHRLDYMSKYLTLEATGHHRALDDV 151 Query: 188 YATIAMAKLVKT 199 T + + + Sbjct: 152 LTTARLLENLWQ 163 >UniRef50_B8CW68 DNA polymerase III, alpha subunit n=1 Tax=Halothermothrix orenii H 168 RepID=B8CW68_HALOH Length = 1397 Score = 143 bits (361), Expect = 1e-32, Method: Composition-based stats. Identities = 36/217 (16%), Positives = 68/217 (31%), Gaps = 31/217 (14%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 + + +TF+ D ET G + + + A++ VI E F Sbjct: 376 PDVSLESATFVVFDLETTGLNKFKNEIIEIGAVKVK-SGKVIDEFSSF---VKPGESIPN 431 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 +TGIT + + E + + + ++ +N FD + + Sbjct: 432 KITELTGITNEMVSRAPDIEGVIGDFLEFI---DGSILVAHN-ADFDYGFLQVALKKTG- 486 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 + + +LD + AL P+ L + +L L + + N H Sbjct: 487 --------QGDISYPVLDTLTLSRALLPD----------LSNHKLNTLARHLNVRLDNHH 528 Query: 182 DAMADVYAT----IAMAKLVKTRQPRLFDYLFTHRNK 214 A+ D AT I +K + K Sbjct: 529 RAVEDARATSEIFINFLSNIKNEGIETVPGINRLSTK 565 >UniRef50_O83649 DNA polymerase III subunit epsilon n=2 Tax=Treponema pallidum RepID=DPO3E_TREPA Length = 215 Score = 142 bits (359), Expect = 2e-32, Method: Composition-based stats. Identities = 38/220 (17%), Positives = 61/220 (27%), Gaps = 25/220 (11%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 + F D ET G DR + A+ D + +I D P I Sbjct: 11 EHVAFTAFDTETTGLKAEEDRIIEIGAVTFDRKG-IIARFSTL---IFPDRAIPPDVSKI 66 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 IT K + T ++ +N FD E P + Sbjct: 67 NHITDDMLVNKPRFC-EIVSDFSRFI--KGTVLVAHN-ANFDVEFLNAELSLCKKQPLSH 122 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 ++D A+ P G +RL++L G+ AH A D Sbjct: 123 K---------VVDTYAMAQAVFP--------GLGRHQYRLQNLALQFGLTVHAAHRAEDD 165 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQM 226 + + + + + H + LI Q Sbjct: 166 ARVCMELFTTMIAHHAKQNGHCVNHAQSPTIKKLIQEIQA 205 >UniRef50_C4FGI7 Putative uncharacterized protein n=1 Tax=Bifidobacterium angulatum DSM 20098 RepID=C4FGI7_9BIFI Length = 186 Score = 141 bits (356), Expect = 5e-32, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 64/191 (33%), Gaps = 26/191 (13%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 ++ D ET G PA DR + A+R + V E +T Sbjct: 16 TDDYVVVDLETTGISPARDRIIEIGAVRVEHG-TVTAEYSKL---VNPGRPVGGFITGLT 71 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 GI+ + EA + L P I+ +N FD + R P++ Sbjct: 72 GISDEMVGNASPIEAVLPDFLAHL--RPSDTIVAHN-ANFDINFLYDNCMRTLGKPFS-- 126 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 +D +D +R AL P+ RL L + GI H ++D Sbjct: 127 -------YDFIDTLRLSRALFPQE----------RQHRLVDLIQRFGIADEEEHRGLSDA 169 Query: 188 YATIAMAKLVK 198 T+ + +K Sbjct: 170 LQTVECYERMK 180 >UniRef50_UPI0001C36AB7 DNA polymerase III, alpha subunit n=1 Tax=Clostridium hathewayi DSM 13479 RepID=UPI0001C36AB7 Length = 264 Score = 141 bits (355), Expect = 6e-32, Method: Composition-based stats. Identities = 41/251 (16%), Positives = 72/251 (28%), Gaps = 41/251 (16%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 K ++ D ET G D + +A++ + V E P GA Sbjct: 52 SKYVDNYVVFDLETTGISAVKDDIIEISALKVKNHEQV--ETFSRLVNPRRP--IPAGAT 107 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 + GIT + +++ E + + ++G+N FD Sbjct: 108 KVNGITDEMVQSEPGLEFILPEFLDFI---DGEILIGHNIQSFDLLFLNRAADEVCRKAV 164 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 D +D + AL P GL RL L I AH A Sbjct: 165 LN---------DFIDTLFMARALLP----------GLSRHRLTDLADYFKISSEGAHRAF 205 Query: 185 ADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTS 244 D ++++ + +G FG + G ++ Sbjct: 206 NDCVM-----------NQICYEHMGKLLKDADIPVCPRCGGELT--KRNGKFGPFYGCSN 252 Query: 245 WVAPLAWHPEN 255 + P + +N Sbjct: 253 Y--PACRYTKN 261 >UniRef50_Q67P96 DNA polymerase III alpha subunit n=2 Tax=Firmicutes RepID=Q67P96_SYMTH Length = 1475 Score = 140 bits (352), Expect = 1e-31, Method: Composition-based stats. Identities = 44/219 (20%), Positives = 75/219 (34%), Gaps = 31/219 (14%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F+ D ET G P D + A+R I + + +P P +T IT Sbjct: 454 FVVLDIETTGFSPIGDDIIELGAVRCRGG--EIVDSFQSFVRPTKPV--PPEVQKLTNIT 509 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 P A + + F I+ +N +FD R + + +A Sbjct: 510 PDMLEGAP----EAAEALRAFFQFVGDAIVVAHNAQFDYSFLRYHRQKYLGEEFANP--- 562 Query: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190 +LD + A+ P + S L LTK + + H A AD Sbjct: 563 ------VLDTLTLARAVLP----------HMRSHSLAALTKELQVPLVDHHRADADAKTA 606 Query: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPL 229 + + R + + T + ++L I+V Q++P Sbjct: 607 AMVLMKLLERA----EGVETVADLNRLTKGINVEQLRPY 641 >UniRef50_C9S0C0 DNA polymerase III, alpha subunit n=30 Tax=Bacteria RepID=C9S0C0_GEOSY Length = 1444 Score = 139 bits (351), Expect = 2e-31, Method: Composition-based stats. Identities = 40/235 (17%), Positives = 71/235 (30%), Gaps = 30/235 (12%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 62 + + T++ D ET G + + AA++ + +I F + Sbjct: 421 HRRLSEETYVVFDVETTGLSAVYNTIIELAAVKVK-DGEIIDRFMSFA---NPGHPLSVT 476 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 + +TGIT + + + + A L +N FD R Sbjct: 477 TMELTGITDEMVKDAPKPDEVLAR----FVDWAGDATLVAHNASFDIGFLNAGLARMGRG 532 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHD 182 A ++D + L P+ L + RL L K IE + H Sbjct: 533 KIANP---------VIDTLELARFLYPD----------LKNHRLNTLCKKFDIELTQHHR 573 Query: 183 AMADVYATIAMAKLVKTRQPR---LFDYLFTHRNKHKLMALIDVPQMKPLVHVSG 234 A+ D AT + + LF R + + P L+ + Sbjct: 574 AIYDAEATGHLLMRLLKEAEERGILFHDELNSRTHSEASYRLARPFHVTLLAQNE 628 >UniRef50_C5D3B0 DnaQ family exonuclease/DinG family helicase n=7 Tax=Geobacillus RepID=C5D3B0_GEOSW Length = 921 Score = 139 bits (349), Expect = 3e-31, Method: Composition-based stats. Identities = 44/230 (19%), Positives = 77/230 (33%), Gaps = 34/230 (14%) Query: 7 QQSTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 + F+ D ET G P DR Q + ++ F+ + P Sbjct: 1 MKDRFVIIDLETTGNVPKKGDRIIQLGMVVI-ENGKIVDRFSSFF---NPERDIPPFVQQ 56 Query: 66 ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA 125 +T IT Q A + A AA++ + + + +N V FD + + + P++ Sbjct: 57 LTNITEQMV-ADAPSFAEEAAKVADMLQQ--SYFVAHN-VSFDLQFLQEELHMAGLPPFS 112 Query: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMA 185 +D + + P S++L L K I+H H A + Sbjct: 113 GP---------TIDTVELARIVFPTA----------ESYKLGDLAKQLHIDHDQPHQADS 153 Query: 186 DVYATIAMAKLVKTRQPRLFDYLFTHRN------KHKLMALIDVPQMKPL 229 D T + + R +L H K L L+D M+ + Sbjct: 154 DAEVTAKLFIALLNRLRQLPFITLQHLKRLSPYLKSDLYPLLDNIIMEKM 203 >UniRef50_Q8RA32 DNA polymerase III polC-type n=5 Tax=Clostridia RepID=DPO3_THETN Length = 1401 Score = 138 bits (348), Expect = 4e-31, Method: Composition-based stats. Identities = 36/239 (15%), Positives = 80/239 (33%), Gaps = 29/239 (12%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 62 ++ + F+ D ET G D + A++ ++ E F Sbjct: 380 SEASLEGEFVVFDIETTGLSNINDEIIEIGAVKIK-NKKIVDTFETF---VNPQIPISSF 435 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 +TGI + E + ++ +N FD ++ + Sbjct: 436 ITKLTGIDESMVKDAPLIE-EVLPKFLEF--AKGAVLVAHN-ANFDVSFIKSKAKKLGL- 490 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHD 182 +N+ D L++ R Y L +++L+ L + ++ + H Sbjct: 491 ------TVENTVLDTLELSRHLY-------------QDLKNYKLDTLAEFFEVKLLHHHR 531 Query: 183 AMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG 241 A+ D AT + + + + + N + +DV ++ P+ HV+ + +G Sbjct: 532 AVEDAKATAEIFIKMLEKLQEIGIKSVSEINSVLMEREVDVKKL-PVYHVTILVKDQKG 589 >UniRef50_C7IIY1 DNA polymerase III, epsilon subunit n=1 Tax=Clostridium papyrosolvens DSM 2782 RepID=C7IIY1_9CLOT Length = 726 Score = 138 bits (347), Expect = 5e-31, Method: Composition-based stats. Identities = 38/242 (15%), Positives = 67/242 (27%), Gaps = 29/242 (11%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 M + + F+ D ET G +P D+ + A++ ++ F Sbjct: 413 MKEHSLEDDFVVFDIETTGLNPHQDKITEIGAVKVR-NGQIVDRFSAF---VNPGVSIPS 468 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 V +TGIT + E + ++ +N FD + Sbjct: 469 FIVKLTGITDDMVKDAPPVE-QVLNEFMEFIQ--GSVLVAHN-ANFDVGFIKQNAKLMGE 524 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 + N D L+ C + PE L ++L + K IE N H Sbjct: 525 -------KVKNPYIDTLE---LCRKMFPE----------LGRYKLNIVAKHLKIELENHH 564 Query: 182 DAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMAL-IDVPQMKPLVHVSGMFGAWR 240 A+ D AT + + + ++ V G Sbjct: 565 RAVDDSMATAKIFMHCINILKEKGCKTIKDIQNAFDGEINLKASSYHAIILVKNKVGLKN 624 Query: 241 GN 242 Sbjct: 625 LY 626 >UniRef50_C7RGM9 DNA polymerase III, alpha subunit n=5 Tax=Anaerococcus RepID=C7RGM9_ANAPD Length = 1365 Score = 137 bits (346), Expect = 7e-31, Method: Composition-based stats. Identities = 40/210 (19%), Positives = 64/210 (30%), Gaps = 28/210 (13%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 ++ +F+ D ET G DR + A R + I E P + + + Sbjct: 343 NIEEESFVVFDLETTGLSRYKDRITEIGACRVEGG--KITEIYNELVNP--EMVIPEKII 398 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 ITGIT + + E + ++G N FD R +R D Sbjct: 399 EITGITNEMVKDCPTIE-EVLPGFLDF--CKDSILVGQNT-DFDVGFVRENCHRMGLD-- 452 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 + D L + RA + F L+ + + I N H A Sbjct: 453 -----FNPIYLDTLPMARA-------------LFSDMKKFSLDKIARKLEIPAFNHHRAS 494 Query: 185 ADVYATIAMAKLVKTRQPRLFDYLFTHRNK 214 D AT + + + NK Sbjct: 495 DDARATAQIFIKMFKMIMEEDGINLSTINK 524 >UniRef50_Q1EM31 DNA polymerase III, alpha subunit n=1 Tax=uncultured Thermotogales bacterium RepID=Q1EM31_9BACT Length = 1428 Score = 137 bits (346), Expect = 8e-31, Method: Composition-based stats. Identities = 42/246 (17%), Positives = 74/246 (30%), Gaps = 32/246 (13%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 FL D ET G +P D + AI+ + + KP + +TGIT Sbjct: 418 FLVFDLETTGLNPKEDEIIEIGAIKMKGS--EVLGTYSTFVKPEKE--LSAMITSLTGIT 473 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 ++ +N FD RN ++F Sbjct: 474 EDMLSEARPI-KEVLPEFTKF--TEGCILVAHN-ASFDYGFVRNSVKKHF---------G 520 Query: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190 + +D + +L S+ L+++ K + H + H A D T Sbjct: 521 GDWEMPCIDTLALAKSLF-----------RSKSYSLDNVVKRLKLGHFDHHRAFEDAKVT 569 Query: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWV-APL 249 + K + K + +D +KP H+S + +G + Sbjct: 570 AEVLKKFVQLAKKRGVQNVNELEKLRKNQNLD--SLKPF-HISILAKNKKGLENLYRLVT 626 Query: 250 AWHPEN 255 A H + Sbjct: 627 ASHTKY 632 >UniRef50_C1FD33 Exonuclease and DNA helicase n=3 Tax=cellular organisms RepID=C1FD33_9CHLO Length = 1473 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 38/202 (18%), Positives = 65/202 (32%), Gaps = 28/202 (13%) Query: 6 KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 + + D ET G + +R + AA+ + +P P +P P V Sbjct: 290 SEVPCVVVFDLETTGLNKDRNRIIEIAAVNV---SDPTHQPMSTLVNPGRFAVPPP-VVA 345 Query: 66 ITGITPQEARAKGENEAAFAARIHSLF--------TVPKTCILGYNNVRFDDEVTRNIFY 117 +TGIT A AA + + + +N +FD + Y Sbjct: 346 LTGITNAMVSAPAVPSFQRAAELFQEYIDEARRRCGGASVLLAAHNARQFDAGFLQAE-Y 404 Query: 118 RNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEH 177 R W+ D L + R + S++LE L G++ Sbjct: 405 RRLGRELPEDWRF----VDTLPLAR---------KTLAKEAVPGGSYKLESLAAHFGVDT 451 Query: 178 SN--AHDAMADVYATIAMAKLV 197 + AH A AD + + + Sbjct: 452 AGASAHRAEADARMLGDVLQRL 473 >UniRef50_C1DWW1 DNA polymerase III PolC-type (PolIII) n=4 Tax=Hydrogenothermaceae RepID=C1DWW1_SULAA Length = 205 Score = 137 bits (344), Expect = 1e-30, Method: Composition-based stats. Identities = 51/236 (21%), Positives = 90/236 (38%), Gaps = 34/236 (14%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 M N ++++FL D ET G +P + AA+R + ++ + KP+ ++P Sbjct: 1 MYNLTIEEASFLIVDLETTGLNPVNSEIIEIAALRVEGG--IVVDKFHTLVKPSIGFIPT 58 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 +TGIT K E F + + I+ +N +FD ++ Y+ Sbjct: 59 Y-ITKLTGITNALVVDKPTIEEVFPQFLKF---SENSIIVAHN-AQFDMSFLNSVSYQ-- 111 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 + + +L L P+ LPS L +L I ++ Sbjct: 112 -------ITGRSIQNPVLCTQNLAKRLFPD----------LPSKSLVNLAYHFNIPYNKK 154 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMF 236 H A+ D T + K ++ DYL+ N +K+M L+ + K L S Sbjct: 155 HRALEDALVTYELFK-------KIIDYLYMF-NINKVMDLVRLSNGKDLNQTSKRR 202 >UniRef50_D1VLC1 DNA polymerase III, epsilon subunit n=1 Tax=Frankia sp. EuI1c RepID=D1VLC1_9ACTO Length = 615 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 41/201 (20%), Positives = 62/201 (30%), Gaps = 25/201 (12%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 TF+ D ET GT P +F A++ V+ E + + P ++TGI Sbjct: 51 TFVVFDLETTGTGPTTAEITEFGAVKVR-GGEVVAEFATL-VRASTG--IPPLITVLTGI 106 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 T A A T ++ +N FD + R Y W Sbjct: 107 TDAML-ATAPPLAEVLPAFLEFIQ--GTVLVAHN-AGFDLSFLKAACERVGYPVPTWEH- 161 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 LD R + D P+ +L L + H A+AD A Sbjct: 162 --------LDTARLARRI--------VTRDESPNNKLSSLARLFRARTEPCHRALADARA 205 Query: 190 TIAMAKLVKTRQPRLFDYLFT 210 T+ + + R L Sbjct: 206 TVDVLHGLFERLGNLGVTTLE 226 >UniRef50_C7G6P2 DNA polymerase III PolC-type n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G6P2_9FIRM Length = 228 Score = 136 bits (343), Expect = 1e-30, Method: Composition-based stats. Identities = 42/206 (20%), Positives = 72/206 (34%), Gaps = 23/206 (11%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 +Q +F D ET G P D+ + AA + +CK + V Sbjct: 1 MQQFKKIVFFDTETTGLDPEKDQIIELAAALVTENGIELK--IDAFCKLPEGEKIPEKIV 58 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 +T IT KG + ++ +L +N++FD +F R P Sbjct: 59 ELTHITDDMLADKGIDYREACRIFCNMLHSDSEVLLVAHNIQFDLLFILEMFKRCGMVPK 118 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHS--NAHD 182 A + D L V + + +P +L + + G+ N+H Sbjct: 119 APKLRA----LDSLTVYK-------DRAAYP--------HKLANAIEHYGLADKVQNSHR 159 Query: 183 AMADVYATIAMAKLVKTRQPRLFDYL 208 A+ DV A + K + + L DY+ Sbjct: 160 AIDDVLALYEVTKAMSEERDDLTDYI 185 >UniRef50_C2JLR4 DNA-directed DNA polymerase III epsilon subunit n=38 Tax=Enterococcus RepID=C2JLR4_ENTFA Length = 929 Score = 136 bits (342), Expect = 2e-30, Method: Composition-based stats. Identities = 41/212 (19%), Positives = 67/212 (31%), Gaps = 27/212 (12%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 62 K + + D ET GT P DR QF + + +I + + Sbjct: 5 KSLKDKQVYAVVDLETTGTDPTSDRIIQFGCVLV-QDGKIIANFAT---DVNPNQVVPKQ 60 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 +TGI+ + + E A I+ T + +N V FD R Sbjct: 61 IQSLTGISNTQVQKAPYFE-DVAHTIYHYLE--DTIFVAHN-VHFDYNFLARELVRCGTP 116 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHD 182 P +D + P SFRL L+++ G+ H N H Sbjct: 117 PLT---------IPAIDTVELAQIFLPTE----------KSFRLSDLSESLGLSHENPHQ 157 Query: 183 AMADVYATIAMAKLVKTRQPRLFDYLFTHRNK 214 A +D T + L++ + L + Sbjct: 158 ADSDAQVTAELLLLIQEKMKSLPLVTMEKIAE 189 >UniRef50_C4LI21 Putative uncharacterized protein n=1 Tax=Corynebacterium kroppenstedtii DSM 44385 RepID=C4LI21_CORK4 Length = 616 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 60/193 (31%), Gaps = 25/193 (12%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 +TF+ D ET G DR + A++ I F L P IT Sbjct: 31 NTTFVVVDLETTGLSAHEDRIIEIGAVKIH-GGEEISRFSTF---VDPGRLIPPLITNIT 86 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 GI+ + + EA T ++ +N RFD + R A Sbjct: 87 GISDDDVNGAPK-EAQAVKDFLEFAR--GTVLVAHN-ARFDIGFLQAASMR------AHI 136 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 + L + R + + SF+L L + + H A+ D Sbjct: 137 TWPQPTHLCTLVLARTM-----------LDRCAVGSFKLSSLARHFHATTTPTHRALDDA 185 Query: 188 YATIAMAKLVKTR 200 AT+ + + Sbjct: 186 LATVTVFHGLLEE 198 >UniRef50_C4PPS2 DNA polymerase III, epsilon chain n=10 Tax=Chlamydiales RepID=C4PPS2_CHLTJ Length = 250 Score = 135 bits (339), Expect = 4e-30, Method: Composition-based stats. Identities = 53/264 (20%), Positives = 86/264 (32%), Gaps = 47/264 (17%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 + F+ D ET G DR +FAAIR F+ I + F P + I Sbjct: 5 KDVEFVCLDCETTGLDVKKDRVIEFAAIRF--TFDEIIDSVEFLIHPERAV--SAESQKI 60 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 I+ R K + +RI F I+G++ V FD +V R Sbjct: 61 HKISDAMLRDKPKF-GEVFSRIKGFFKERDH-IVGHH-VGFDLQVLSQESERLGE----- 112 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 ++D +R + P+ LE L + + H H AM D Sbjct: 113 --TLLPKHHYVIDTLRLA-----------KEYGDSPNNSLEALARHFNVPHQGNHRAMKD 159 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWV 246 V + + K + R R ++ ++ KP+ G ++G Sbjct: 160 VEMNVKVFKHLTKR----------FRTLSQVTHIL----SKPIKMKYMPLGKYKGRLFTD 205 Query: 247 APLAWHPENRNAVIMVDLAGDISP 270 PL + ++ L D Sbjct: 206 IPLEY--------LLWALKMDFDQ 221 >UniRef50_D2RJV7 DNA polymerase III, epsilon subunit n=1 Tax=Acidaminococcus fermentans DSM 20731 RepID=D2RJV7_ACIFE Length = 223 Score = 135 bits (339), Expect = 5e-30, Method: Composition-based stats. Identities = 47/214 (21%), Positives = 73/214 (34%), Gaps = 32/214 (14%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPA---DDYLPQPGAV 64 T++ D ET G P D+ + A+ + G +P + P Sbjct: 22 PDTYVVVDLETTGLDPERDQIIEIGALEVTAGKR--GRTFSTLLQPRTPLEGQYVSPFIT 79 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 +TGIT + A + +GYN V FD + F Y P Sbjct: 80 RLTGITNEMLAAAPQP-RQALEAFGKFLGSR--VAVGYN-VGFDMGFLQQQFQDQLYRPL 135 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 A W D+L + + + L RL +L +E+ AH A+ Sbjct: 136 ANDW------VDVLPMAQTLFPLWDH-------------HRLNNLAAWYHVENKEAHRAL 176 Query: 185 ADVYATIAMAKLVKT----RQPRLFDYLFTHRNK 214 +DV T + +K + P L D+L R K Sbjct: 177 SDVETTETCFRKLKEDAGRQYPSLEDFLEKVRQK 210 >UniRef50_Q8EQD9 ATP-dependent DNA helicase n=3 Tax=Bacillaceae RepID=Q8EQD9_OCEIH Length = 939 Score = 134 bits (338), Expect = 5e-30, Method: Composition-based stats. Identities = 38/205 (18%), Positives = 69/205 (33%), Gaps = 28/205 (13%) Query: 11 FLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 F+ D ET G P+ D+ + + + + +I F+ P +TGI Sbjct: 4 FVVIDLETTGHAPSKNDKIIEIGMVIIEGD-EIIDTKTTFF---NPGQPIPPFITNLTGI 59 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 + + A I S+ + I+ +N V FD N D Sbjct: 60 SDDDVADAPLF-TEKALSIKSILE--DSYIIAHN-VNFDLGFLNAELKENGIDRLHNQ-- 113 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 +LD + L P P ++L L+ ++H + H A++D Y Sbjct: 114 -------VLDTVELSRILFPTA----------PGYKLSQLSDHFNLQHDDPHRALSDAYV 156 Query: 190 TIAMAKLVKTRQPRLFDYLFTHRNK 214 T + + + + +L K Sbjct: 157 TAKLFQKLMDKINQLPYETIEQWLK 181 >UniRef50_C3RQT5 DNA polymerase III subunit epsilon n=1 Tax=Mollicutes bacterium D7 RepID=C3RQT5_9MOLU Length = 224 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 37/202 (18%), Positives = 69/202 (34%), Gaps = 23/202 (11%) Query: 6 KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLP---QPG 62 + ++ D ET G + DR + AI+ V+ C P P Sbjct: 36 QSIQEYVVFDLETTGFNKKEDRIIEIGAIKVK-NGRVVDRFSTL-CAPIKGGKPMYISAK 93 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 +TGI + + E+ K + +N ++FD + R+ + Sbjct: 94 ITEVTGIKNVDLLNQ-IPESEAVKNFMCWLGESK-ISVAHNGLKFDIPFLKEACKRSNVE 151 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHD 182 +LD M AL N+ +P+ + E L + G+++ AH Sbjct: 152 FKFTH---------ILDTMLLSKALN------YVNNGNIPNNKQETLARYFGVDY-QAHR 195 Query: 183 AMADVYATIAMAKLVKTRQPRL 204 A+ D A + + +K + Sbjct: 196 AVNDCEALLKIFDKLKNDAKNI 217 >UniRef50_A1BAS5 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BAS5_PARDP Length = 659 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 45/222 (20%), Positives = 67/222 (30%), Gaps = 30/222 (13%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 T + D ET G P DR Q A +R + + GE P + + GI Sbjct: 452 TCVVFDTETTGLDPVADRIVQIAGLRI-ARGRLTGERFDTLV--DPGRPIPPASTAVHGI 508 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 T G + A F T ++ +N FD R Sbjct: 509 TDAMVA--GAPDMTAALTAFHHFAE-DTVLVAHN-APFDMGFLRRAV-------PETGAH 557 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANG--IEHSNAHDAMADV 187 DN +LD + L + L+ LT+ G I H AM D Sbjct: 558 FDNQ---VLDTVLLSAMLWGQSAP----------HSLDALTERLGIVIPPEARHTAMGDA 604 Query: 188 YATIA-MAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKP 228 AT +L+ + + D + + + KP Sbjct: 605 RATAEAYLRLIAALEAKGLDRFEDVLAEARRHRRLVDDANKP 646 >UniRef50_P54394 Probable ATP-dependent helicase dinG homolog n=10 Tax=Bacillus RepID=DING_BACSU Length = 931 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 43/255 (16%), Positives = 81/255 (31%), Gaps = 28/255 (10%) Query: 7 QQSTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 + F+ D ET G P D+ Q AA+ ++ I E Y P Sbjct: 2 NKQRFVVIDVETTGNSPKKGDKIIQIAAVVIENG--QITERFSKYINPN--KSIPAFIEQ 57 Query: 66 ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA 125 +TGI+ Q + EA A + L + +N + FD + ++ + Sbjct: 58 LTGISNQMVENEQPFEA-VAEEVFQLL--DGAYFVAHN-IHFDLGFVKYELHKAGFQLPD 113 Query: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMA 185 +LD + + P G ++L L++ + H H A + Sbjct: 114 CE---------VLDTVELSRIVFP----------GFEGYKLTELSEELQLRHDQPHRADS 154 Query: 186 DVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSW 245 D T + + + +L + + D+ + + G T + Sbjct: 155 DAEVTGLIFLEILEKLRQLPYPTLKQLRRLSQHFISDLTHLLDMFINENRHTEIPGYTRF 214 Query: 246 VAPLAWHPENRNAVI 260 + PE + I Sbjct: 215 SSFSVREPEAIDVRI 229 >UniRef50_Q21VB4 DNA polymerase III, epsilon subunit n=7 Tax=Betaproteobacteria RepID=Q21VB4_RHOFD Length = 476 Score = 134 bits (338), Expect = 6e-30, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 61/193 (31%), Gaps = 28/193 (14%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 ++ D ET G +P DR + AA+R + P +TG Sbjct: 3 PCYVLLDLETTGGNPVHDRITEIAAVRI-ENGQEVARWSTL---VNPGCSISPFIQHLTG 58 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 I+ R E A + +L ++ +N VRFD N R Sbjct: 59 ISNAMVRGAPGFE-TVAQHLLALL--DGAVLVAHN-VRFDHGFLLNELAR---------- 104 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 R L +R L P+ L+ + + +GI H AM DV Sbjct: 105 LDVALRVKTLCTVRLSRLLYPQ----------HKGHGLDAIMQRHGIRTLERHRAMGDVE 154 Query: 189 ATIAMAKLVKTRQ 201 A ++ + Sbjct: 155 VMQAWLQIARQEH 167 >UniRef50_Q252U5 DNA polymerase III epsilon chain n=5 Tax=Chlamydiales RepID=Q252U5_CHLFF Length = 249 Score = 134 bits (336), Expect = 9e-30, Method: Composition-based stats. Identities = 46/221 (20%), Positives = 76/221 (34%), Gaps = 27/221 (12%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 + + F+ D E G DR +FAA R + NVI E D + + I Sbjct: 5 KDTIFVCLDCEMTGLDVKKDRIIEFAAKRFTFD-NVIDSMETL---INPDRVISAESQRI 60 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 I+ + + F F I+G+ +V FD +V R Sbjct: 61 HRISDAMLKDQPRISEVFPKI--QAFLKEGDYIVGH-SVGFDLQVLTQEAERIG------ 111 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 + S++ ++D +R + P+ LE L + + H AM D Sbjct: 112 --ETFLSKYCIIDTLRLA-----------KEYGDSPNNSLEALAVHFNVPYDGNHRAMKD 158 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMK 227 V I + K R R + L +K M + + + K Sbjct: 159 VEININIFKHFCKRF-RTIEQLKQVLSKPIKMKYMPLGKHK 198 >UniRef50_B9L7M7 Exonuclease n=3 Tax=cellular organisms RepID=B9L7M7_NAUPA Length = 293 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 49/275 (17%), Positives = 91/275 (33%), Gaps = 37/275 (13%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 + D ET G + DR Q + + + I E KP A+ + I Sbjct: 2 KIVILDTETTG-NKEEDRIIQLSYLVLNENL-EIEEIHDELVKPP--LPISFEAMAVHHI 57 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 T + K + + + P+ ++ +N +FD ++ + Sbjct: 58 TNEMVEDKPLIKHTESYKRLKELNSPENLLVIHN-AKFDLDMLKKE-------------- 102 Query: 130 HDNSRWDLLDVMRACYALRPEGINW--PENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 NS + L+D R L PEG + + + + I+ NAHDA+ DV Sbjct: 103 GFNSFFKLIDTFRVLKHLIPEGKFSLQYNRYALGLYKKEKDICEKYNIQI-NAHDALGDV 161 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 247 + + + T + + L K P++H + Sbjct: 162 IVLGLLFEYLVTNFEKNVEELVELTTK-------------PVLH-DKFYQGKYKFEKIKD 207 Query: 248 PLAWHPENRNAVIMV-DLAGDISPLLELDSDTLRE 281 L P+ ++ + DL D+ +E + L E Sbjct: 208 VLIKDPDYIEYMLSLTDLDPDVKYSIEHHLENLDE 242 >UniRef50_Q1IXC1 DNA polymerase III, epsilon subunit n=2 Tax=Deinococcus RepID=Q1IXC1_DEIGD Length = 180 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 31/197 (15%), Positives = 54/197 (27%), Gaps = 29/197 (14%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPAD---DYLPQPG-AVL 65 + D ET G P D + A+R V E +P + + +P P A Sbjct: 2 NVVVFDLETTGLSPERDAIVEIGALRVVDGRVVESERFETLVRPQNAAGEVVPIPWRAQR 61 Query: 66 ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA 125 + GI+ + + + +N+ FD R R Sbjct: 62 VHGISDAMVQDAP----ELGQVLPEFLDFVGRSAVAAHNIGFDSSFMRAAARRCGL---- 113 Query: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEH--SNAHDA 183 W ++ P + L+ L + G+ H + Sbjct: 114 -VWAPPAEY----CTVQLSRRAFPRE----------RTHNLDVLAQRLGLSFAPGGRHRS 158 Query: 184 MADVYATIAMAKLVKTR 200 + DV T + R Sbjct: 159 LGDVQVTAEAFVRLMER 175 >UniRef50_A5Z9S3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z9S3_9FIRM Length = 1474 Score = 133 bits (335), Expect = 1e-29, Method: Composition-based stats. Identities = 35/244 (14%), Positives = 71/244 (29%), Gaps = 31/244 (12%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 ++ D ET G D+ + A++ +I F + Sbjct: 400 PKGQHLNDRYVVFDLETTGFSAKSDKIIEIGAVKV-ENGKIIDRFSTF---VNPEIPIPF 455 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 +T I + + E + + ++ +N+ FD R Sbjct: 456 RIEKLTSINDEMVIDAPKIE-EILPQFMEF--CKDSVMVAHNS-DFDMSFIEANCKRQDL 511 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 + + ++D + L GL ++L+++ KA GI + H Sbjct: 512 E----------CDFTVIDTVAMSRYLI----------IGLGRYKLDNVAKALGIVLDHHH 551 Query: 182 DAMADVYATIAMAKLVKTRQPRLFDYLFT--HRNKHKLMALID-VPQMKPLVHVSGMFGA 238 A+ D T + + +R + LID +P ++ V G Sbjct: 552 RAVDDAECTALIFLKLCKMLEGKGIDNLDELNRQGKQSKNLIDKLPAHHAIILVKNQVGR 611 Query: 239 WRGN 242 Sbjct: 612 VNLY 615 >UniRef50_A3I8T8 Bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon n=2 Tax=Bacillaceae RepID=A3I8T8_9BACI Length = 914 Score = 133 bits (334), Expect = 2e-29, Method: Composition-based stats. Identities = 42/202 (20%), Positives = 60/202 (29%), Gaps = 28/202 (13%) Query: 15 DYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQE 73 D ET G PA DR Q A + I + P +T IT ++ Sbjct: 2 DLETTGHSPANGDRMIQIAIVIMKD--WEIERTYTKFINP--GKAIPSFIQDLTHITNED 57 Query: 74 ARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNS 133 + E A I+ L + +N FD + F R + Sbjct: 58 VKDSYPFE-EHADYIYELLA--DCVFVAHN-ADFDLSFLQAEFKRAGLPKWQGKK----- 108 Query: 134 RWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAM 193 +D + L P + F+L L IE +NAH A D AT + Sbjct: 109 ----MDTVELAKILFPMSL----------GFKLGDLAADLNIELANAHRADDDARATAEL 154 Query: 194 AKLVKTRQPRLFDYLFTHRNKH 215 K L +K Sbjct: 155 FKCCWKELLNLPQLTLEQMHKR 176 >UniRef50_A6DIP6 Exonuclease n=1 Tax=Lentisphaera araneosa HTCC2155 RepID=A6DIP6_9BACT Length = 261 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 48/220 (21%), Positives = 71/220 (32%), Gaps = 27/220 (12%) Query: 6 KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 Q +F D ET G +P DR + I+ + + + + A Sbjct: 4 NLQRPIVFFDLETTGLNPTEDRIIEICCIKVHPDGKRDIKTR----RVNPEKPISSEASE 59 Query: 66 ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA 125 ITGIT ++ + + A I+ F I GYN +RFD V F R Sbjct: 60 ITGITDEDVKDE-PTFKQMAKGIYKFFE--GCDISGYNIMRFDLRVLTEEFKRAGI---- 112 Query: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMA 185 D S DL+DV R + P + AH A Sbjct: 113 ---SFDASAHDLVDVQRIFHKKEPRTLEAALRFYCKKDL-------------EGAHAAEN 156 Query: 186 DVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQ 225 DV ATI + + L + + K +D+ Sbjct: 157 DVIATIDVLEGQLDMYDDLENDMAKLAEYCKDERWVDMNG 196 >UniRef50_C0ECE2 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0ECE2_9CLOT Length = 865 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 41/200 (20%), Positives = 67/200 (33%), Gaps = 25/200 (12%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 + + D E+ GT + D Q AA+R D V+ E P Sbjct: 490 LTRALYGKNVVVFDVESTGTDTSSDEIIQIAAVRIDETGRVLRSFEQLLH----PSKPVG 545 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 + + + +G A S ++G+N V FD + + R Sbjct: 546 QSEAVHHFSDALLAERGGEPPQVLAEFCSFVR--GAVVVGHN-VGFDLTILASELSRLGL 602 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 P + +D LD+ R Y P +LE L+K E ++H Sbjct: 603 PPAEYE-----EYYDTLDLARRFYPDLPN-------------HKLETLSKLLDTEVKSSH 644 Query: 182 DAMADVYATIAMAKLVKTRQ 201 DAM D+ AT + + + Sbjct: 645 DAMDDILATKDVLLHLTAHK 664 >UniRef50_C0WTL9 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C0WTL9_LACBU Length = 945 Score = 132 bits (332), Expect = 3e-29, Method: Composition-based stats. Identities = 48/230 (20%), Positives = 84/230 (36%), Gaps = 30/230 (13%) Query: 5 GKQQSTFLFHDYETFGTHPALD-RPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 63 ++T+ D ET GT ++D R QF+ I E V P + Sbjct: 1 MNSKTTYAVVDIETTGTDMSVDNRIIQFSCTLVAHG--KIVETYVSDINPQREV--PERI 56 Query: 64 VLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 + +TGITP+ K +++++ L + T + +N V FD F R Y Sbjct: 57 IQLTGITPERL-KKAPTFDQVSSKLYKLLS--GTVFVAHN-VNFDFPFLNGEFQRVGYPE 112 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDA 183 +D + L P L S+RL+ L+ I H++ H A Sbjct: 113 LDIE---------AIDTVTLSQILLPT----------LSSYRLQDLSTYFNIIHNHPHTA 153 Query: 184 MADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVS 233 +D AT + ++ + L ++ + + MK + V+ Sbjct: 154 DSDALATAKLLLILLRQVKMLPRRTLE--QIIQINPSLPLDTMKVFIQVN 201 >UniRef50_Q9PQB4 DNA polymerase III polC-type n=17 Tax=Ureaplasma RepID=DPO3_UREPA Length = 1442 Score = 132 bits (331), Expect = 4e-29, Method: Composition-based stats. Identities = 39/199 (19%), Positives = 69/199 (34%), Gaps = 28/199 (14%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 62 + +T++ D ET G P D +F A+ + IGE F+ KP Sbjct: 401 DQNLDNATYVIFDIETTGLFPNFDEIIEFGAVIMQNN-KQIGEKIQFFIKPIQQ--INEN 457 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 +T I+ + +E +I +F ++ +N + FD + + Sbjct: 458 VTNLTNISQEMV-NNAIDEKTALLKIKEIF--DDHILVAHNGINFDINFINQRLLKWGLE 514 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSN--A 180 P N D L + RA S RL + K +++++ A Sbjct: 515 PLK------NPSIDTLMISRAINPF--------------KSHRLGAICKKYEVDYNDESA 554 Query: 181 HDAMADVYATIAMAKLVKT 199 H A D + K++K Sbjct: 555 HRADYDAIVLADVFKVMKN 573 >UniRef50_Q2W728 DNA polymerase III n=4 Tax=Magnetospirillum RepID=Q2W728_MAGSA Length = 412 Score = 131 bits (330), Expect = 4e-29, Method: Composition-based stats. Identities = 43/230 (18%), Positives = 70/230 (30%), Gaps = 31/230 (13%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLP 59 M + TF+ D ET G HP+ D+ A +R + + GE P Sbjct: 209 MGAQPLKSLTFVVFDTETTGLHPSQGDQIVSIAGVRIVNGRILSGESFNRIVNP--GRPI 266 Query: 60 QPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRN 119 ++ GIT K + S ++ +N FD + R Sbjct: 267 PAESIRYHGITDDMVVDK-PPAGVVLPQFRSYVA--DAVLVAHNAA-FDLKFLR------ 316 Query: 120 FYDPYAWSWQHDNSRWDL--LDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEH 177 + R+D+ LD M L D L+ + GIE Sbjct: 317 ------MREKDMGIRFDIPVLDTMILSNFL----------DGPDAGHSLDDICDRYGIEI 360 Query: 178 SNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMK 227 ++ H A+ D T A+ K +A+I + + Sbjct: 361 TDRHTALGDAMVTAAVLLRQIEALEGRGIQTLDQAVKTLDIAMILHERQR 410 >UniRef50_D1N2X3 DNA polymerase III, epsilon subunit n=1 Tax=Victivallis vadensis ATCC BAA-548 RepID=D1N2X3_9BACT Length = 185 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 46/203 (22%), Positives = 65/203 (32%), Gaps = 35/203 (17%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 F D ET G P DR + AA+R D + + + + AV + I Sbjct: 8 PFTIFDVETTGMSPVRDRIVELAAVRVDRDGS-LSRFQSL---VNPGVRIPAQAVAVHHI 63 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 T FA L +N RFD + R + Sbjct: 64 TDDMVAGAPS----FARMGLDFLEFASESTLVAHNARFDLGFLQESLARTGLPLWKGK-- 117 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHS---NAHDAMAD 186 LD +R P LPS+ L+ L +E NAH A AD Sbjct: 118 -------TLDSLRLLKTTFPN----------LPSYNLQSLRAYFQLETEKGMNAHRAGAD 160 Query: 187 VYAT-----IAMAKLVKTRQPRL 204 V T IA++K ++ P+ Sbjct: 161 VEWTRQVLEIALSKAIRMSAPQH 183 >UniRef50_C7GFY3 DNA polymerase III PolC-type (Fragment) n=3 Tax=Clostridiales RepID=C7GFY3_9FIRM Length = 697 Score = 131 bits (330), Expect = 5e-29, Method: Composition-based stats. Identities = 33/243 (13%), Positives = 67/243 (27%), Gaps = 31/243 (12%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 62 + T++ D ET G P ++ + A++ I E + P + Sbjct: 467 KNQNLDDTYVVFDLETTGFSPDKNKIIEIGAVKVVHG--EITERFSTFVNP--EVPIPYR 522 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 +T I + E + I+ +N FD R + Sbjct: 523 IEELTSIRDDMVIDAPKIET----ILPQFMEFCGDAIMVAHNADFDMSFIIKNCERQGIE 578 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHD 182 + ++D + L P+ L F+L+ + KA G+ N H Sbjct: 579 ----------KEFTIIDTVALARILLPQ----------LNRFKLDTVAKALGVSLENHHR 618 Query: 183 AMADVYATIAMAKLVKTRQPRLFDYLF---THRNKHKLMALIDVPQMKPLVHVSGMFGAW 239 A+ D T + + ++ + ++ + G Sbjct: 619 AVDDAGCTAEIFVKFVKMLHDRGMETLDQVNQMGQASPETIMKMNTYHAIILATNDIGRI 678 Query: 240 RGN 242 Sbjct: 679 NLY 681 >UniRef50_Q38W73 DNA polymerase III polC-type n=246 Tax=Bacilli RepID=DPO3_LACSS Length = 1446 Score = 131 bits (329), Expect = 6e-29, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 68/204 (33%), Gaps = 27/204 (13%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 62 + + + ++ D ET G D + AA++ + V+ + F + Sbjct: 417 DQVLESAEYVIFDVETTGLSAVYDSIIELAAVKMR-DGEVVASFDEF---IDPERPLSAF 472 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 +T IT + + EA A +L +NV FD + RN D Sbjct: 473 TTQLTSITNEMVHGAKK-EAEVLAMFKEF---TGDAVLAGHNVSFDMGFLNAGYERNDID 528 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHD 182 ++D + L PE + +L+ LTK I + H Sbjct: 529 LIDNP---------VIDTLELSRMLHPE----------YKNHKLDSLTKRYKINLEHHHR 569 Query: 183 AMADVYATIAMAKLVKTRQPRLFD 206 A AD +T + ++ +D Sbjct: 570 ANADAESTGYLLYKLEKEAAENYD 593 >UniRef50_A5I1F6 Helicase, UvrD/REP/exonuclease family protein n=10 Tax=Clostridium RepID=A5I1F6_CLOBH Length = 855 Score = 130 bits (328), Expect = 7e-29, Method: Composition-based stats. Identities = 55/320 (17%), Positives = 100/320 (31%), Gaps = 40/320 (12%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 ++ G + D E+ G + D Q A I+ +++ VI + F Sbjct: 485 LLTRGLDNENVVVFDVESTGINTTEDEIVQIAGIKINNKGEVIESFQRFLT----PKKFV 540 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 + L+ G + Q + GEN+ T I+G+N V FD + + R Sbjct: 541 GDSYLVHGFSDQFLKENGENKKVVLKDFLEFI--KDTVIVGHN-VAFDISILNSELER-- 595 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 + + +D LD+ R Y L + +LE L+K E ++ Sbjct: 596 ---LSLEKASFKTYYDTLDIARRFYP-------------NLTNHKLETLSKLFNTETKSS 639 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 HDAM D+ AT + + + + + + + + + Sbjct: 640 HDAMDDILATKDVLMAMLKEKVKPTIINRMVVYGKYIKKFQPIYKEITNLKKLTYIKNPK 699 Query: 241 GNTSWV--------APLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGD 292 + + + N +A +I D L E L + Sbjct: 700 DIIGEIVNKTKIKEIYKDQYIKINNLREFFVIAKEIENKEISSRDNLIELLKITSLSNSE 759 Query: 293 N-------AAVPVKLVHINK 305 VP+ VH K Sbjct: 760 LDRMLTKYPRVPIITVHQAK 779 >UniRef50_C1TRP3 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Dethiosulfovibrio peptidovorans DSM 11002 RepID=C1TRP3_9BACT Length = 193 Score = 130 bits (328), Expect = 8e-29, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 66/199 (33%), Gaps = 28/199 (14%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 M+ S F+ D ET G DR + AIR E E F + Sbjct: 1 MDKSLWDSGFVAIDVETTGLSNRWDRIVEIGAIRFTPG----SETESFQTFVSPGRPIPS 56 Query: 62 GAVLITGITPQEAR-AKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 AV I GIT + A G +EA+ A + S + + ++N FD Sbjct: 57 EAVAIHGITDEMVEGAPGLSEASIA--LASFLKDEEPMV--FHNPSFDLGFL-------- 104 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 D + + + + D P G+ + L L + G+ Sbjct: 105 -DANMRAIKGSWNVMPVFDTCGLARKAFP----------GIKGYSLVALARHFGLSGGGH 153 Query: 181 HDAMADVYATIAMAKLVKT 199 H A+ D + ++ L+ Sbjct: 154 HRALEDCRYSASLFNLILE 172 >UniRef50_C7NEP7 DNA polymerase III, alpha subunit n=5 Tax=Fusobacteriaceae RepID=C7NEP7_LEPBD Length = 1459 Score = 130 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 35/198 (17%), Positives = 62/198 (31%), Gaps = 28/198 (14%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 62 + + ++ D ET G P D+ + A++ VIGE F + Sbjct: 417 DKMIEDEIYVVFDIETTGFDPFNDKIIEIGAVKMR-GREVIGEFSEF---VNPEIPIPQK 472 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 +T IT + + E + T ++ +N +FD + + Sbjct: 473 ITELTTITDEMVANAEKIETVLPRFLEF---CTGTTVVAHN-AKFDVGFIKQKTIDQGLE 528 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHD 182 ++D + L PE L + L +L K GI H Sbjct: 529 YSPS----------VIDTLPLARTLLPE----------LRGYGLANLVKYFGITLETHHR 568 Query: 183 AMADVYATIAMAKLVKTR 200 A+ D AT + + Sbjct: 569 AVDDAKATAEVFQKFLNM 586 >UniRef50_Q8XJR3 DNA polymerase III polC-type n=37 Tax=Clostridia RepID=DPO3_CLOPE Length = 1449 Score = 130 bits (328), Expect = 9e-29, Method: Composition-based stats. Identities = 35/231 (15%), Positives = 68/231 (29%), Gaps = 31/231 (13%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 62 ++ ++ D ET G D+ + A++ + ++ F Sbjct: 427 HEESFDDEYVVFDIETTGFSSKNDKIIEIGAVKLK-DGEIVDSFSTF---VDPKVNIPYK 482 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 +T IT + + + + ++ +N FD + Sbjct: 483 ITELTSITQNMVNGQPTID-EVLPKFMEFV--GNSVLVAHNAA-FDVGFIKKNLMDMG-- 536 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHD 182 N D + + R Y L +L + K GI N H Sbjct: 537 -----KTLKNPVMDTVPLARYLYP-------------DLKKVKLNLVAKHLGISLENHHR 578 Query: 183 AMADVYATIAMAKL-VKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHV 232 A+ D AT + K K + + + N+ L + + PL H+ Sbjct: 579 AVDDAKATAEILKFSFKKMKEEMDIHDVKTLNEKYLSNI--DVKKLPLHHI 627 >UniRef50_A1BCD0 DNA polymerase III, epsilon subunit n=1 Tax=Paracoccus denitrificans PD1222 RepID=A1BCD0_PARDP Length = 706 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 37/198 (18%), Positives = 69/198 (34%), Gaps = 27/198 (13%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLP 59 + + ++ ++ D ET G +PA D Q A+R + + GE Sbjct: 506 LDDQPLERLSYTVFDTETTGLNPAQGDEIIQIGALRILNGKLLRGERFDQLV--DPGREI 563 Query: 60 QPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRN 119 P ++ GI P+ + + A H+ T ++G+N V FD + Sbjct: 564 PPESIPYHGIHPEMVQGQPRI-AEVLPAFHAY--ASDTVLVGHN-VAFDMRFLQ------ 613 Query: 120 FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSN 179 + +LD + +P PS LE + G+E + Sbjct: 614 ----LKEAATGLRFDQPVLDTLLLASIAQP----------HEPSHSLEAIAARLGVEITQ 659 Query: 180 AHDAMADVYATIAMAKLV 197 H+A++D T + + Sbjct: 660 RHNALSDALVTAEVFLRL 677 >UniRef50_Q2NJG3 DNA polymerase III alpha subunit n=3 Tax=Candidatus Phytoplasma RepID=Q2NJG3_AYWBP Length = 1572 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 48/265 (18%), Positives = 85/265 (32%), Gaps = 31/265 (11%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 +++T++ D ET G D+ + A I+ N IGE + F I Sbjct: 477 KEATYVVFDLETTGLSNVRDKIIEIAGIKIK-NGNKIGEFQKF---IDPQQKLTKTITNI 532 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 T IT + + + + + K C+L +N FD + + A Sbjct: 533 TNITDEMLQGQQTID----QVLPQFLAFAKDCVLVAHNASFDVDFLKE---------KAK 579 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 + ++D M + + F L+ L ++ + H A+AD Sbjct: 580 ELKISLEPKPIIDTMALSQRYFSNLLKY---------FSLKRLATVFKVKLEDHHRALAD 630 Query: 187 VYATIAMAKLVKTR--QPRLFDYLFTHRNKHKLMALIDVPQMKPL---VHVSGMFGAWRG 241 AT + + + P N +L ID +P + V+ G Sbjct: 631 ATATSEIFIKMIDQLADPTKDPKNEQVINFFELQEKIDHKYERPYHINILVANQTGYRNL 690 Query: 242 NTSWVAPLAWHPENRNAVIMVDLAG 266 L R V+ +LA Sbjct: 691 FELLSNALTKDFNKRPRVLKSNLAN 715 >UniRef50_C0N1K0 Exonuclease family n=1 Tax=Methylophaga thiooxidans DMS010 RepID=C0N1K0_9GAMM Length = 488 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 43/219 (19%), Positives = 68/219 (31%), Gaps = 31/219 (14%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 M + + + D ET G + DR + A I + +V+ + Sbjct: 1 MTDLSAFPPSMVILDCETTGGRASRDRLTEIALIEV-EDGHVVKRWQTL---LNPLRPIP 56 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 P +TGIT F LF ++ +N RFD R F R Sbjct: 57 PWITRLTGITDATVADAP----TFDEIADELFACLDGKVIVAHNARFDYSFLRQSFQRCG 112 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 + N L ++ L PE S L+ + + G+ N Sbjct: 113 -------YTLGNK---TLCSVKLSRQLFPE----------HRSHGLDRIIERLGLTIDNR 152 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMA 219 H AMAD +A + + + P K +L Sbjct: 153 HRAMADTEVLLAFFEHISAQFPA---TTIRSACKQQLKR 188 >UniRef50_A2SRZ3 Exonuclease, RNase T and DNA polymerase III n=1 Tax=Methanocorpusculum labreanum Z RepID=A2SRZ3_METLZ Length = 228 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 47/198 (23%), Positives = 74/198 (37%), Gaps = 23/198 (11%) Query: 12 LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITP 71 L D ET G +P +DR + AAI+ D N Y +D +TGITP Sbjct: 2 LIVDTETTGLNPKIDRITELAAIKFDKYGNK--SVMDEYISLPNDICYPENVQEMTGITP 59 Query: 72 QEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHD 131 + KG E A + P +L +N +FD + + R + Sbjct: 60 EILELKGHPEEEIAWMFAMMLKSPGRVLLVTHNAQFDLRFIQEMLSR-------HRYVFP 112 Query: 132 NSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEH-SNAHDAMADVYAT 190 N W ++D + +P+ RL G++ N+H A+ DV A Sbjct: 113 NG-WGVIDTLTVFRDRKPQP------------HRLSDAISYYGLDGVKNSHRAIDDVVAL 159 Query: 191 IAMAKLVKTRQPRLFDYL 208 A+ + Q L +Y+ Sbjct: 160 CAVFDAMCQEQNDLDEYI 177 >UniRef50_Q895K2 DNA polymerase III polC-type n=13 Tax=Clostridia RepID=DPO3_CLOTE Length = 1427 Score = 130 bits (327), Expect = 1e-28, Method: Composition-based stats. Identities = 36/238 (15%), Positives = 70/238 (29%), Gaps = 32/238 (13%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 + +++ D ET G D+ + A++ V+ + F + + + +T Sbjct: 410 EDSYVVFDIETTGFSNKNDKIIEIGAVKIKEG-KVVDKYSTF---VNPERIIPEKIIELT 465 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 GI + + E I + + ++ +N FD + Sbjct: 466 GIHDYMVKDAPKIEEVLPKFIDFI---EDSILVAHN-ANFDVSFIKKNCKDFGI------ 515 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 +N D + C L PE L ++L + K GI N H A+ D Sbjct: 516 -HFNNPILDTIP---LCKFLYPE----------LKRYKLNVVAKHLGIPLLNHHRAVEDA 561 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKP---LVHVSGMFGAWRGN 242 T + N+ D+ + ++ V G Sbjct: 562 KTTGDILLKAFEDLKDKEIMNLNMLNEEYFKNQ-DIKKSPTYHVIILVKNKIGLKNLY 618 >UniRef50_B0MME8 Putative uncharacterized protein n=3 Tax=Clostridiales RepID=B0MME8_9FIRM Length = 1605 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 41/238 (17%), Positives = 77/238 (32%), Gaps = 32/238 (13%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG-AVLI 66 + + D ET G HPA +R + A++ + I E + P +P P + Sbjct: 588 EDDIIVFDIETTGLHPANERITEIGAVKLRN--MEIVERFSTFVNP---MMPIPSNITEL 642 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 TGIT A E + + +N +FD R+ R Sbjct: 643 TGITDDMV-ADAPTEDVA---VSDFMAFCGNSPVCAHNAKFDVSFIRSAAARM------- 691 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 DN D L + +A G+ +++L+ + K + + H A+AD Sbjct: 692 EKSFDNPVVDTLSIAKAA-------------LKGIKNYKLDTIAKYFKLGDFDHHRAVAD 738 Query: 187 VYATIAMAKLVKTRQPRL--FDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGN 242 + + + +Y+ + + +P ++ V G Sbjct: 739 AEMLCMIYMHIVNDTRKTAKLEYIGDFNTAFGSVDIKKLPTYHQIILVKNKVGLKNLY 796 >UniRef50_D1AWZ0 DNA polymerase III, alpha subunit n=1 Tax=Streptobacillus moniliformis DSM 12112 RepID=D1AWZ0_STRM9 Length = 1465 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 46/268 (17%), Positives = 86/268 (32%), Gaps = 31/268 (11%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 ++ F+ D ET G P D+ + A++ V+ F + V + Sbjct: 400 EEEEFVVFDIETTGFSPINDKIIEIGAVKLK-NGKVLDRFSEF---VNPQTIIPKKIVEL 455 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 TGI + + + V T ++ +N +FD Sbjct: 456 TGINDNMVKDSDIIDKVMPRFLEF---VKGTTLVAHN-AKFDVGFI----------SKKC 501 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 + + + +D + L + F L+ LTK I+ N H A+ D Sbjct: 502 EDLNLETDFSYIDTLEWSKILVDDV----------KRFNLDTLTKRFNIKLENHHRAVDD 551 Query: 187 VYATIAMAKLVKTR-QPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSW 245 AT + K + + + L K + I + ++ V + G R Sbjct: 552 ANATAELFKKLLSLVSANGVEKLTDVSEKLEKKPKIADTENITIL-VKNLAGLKRLYELV 610 Query: 246 VAP-LAWHPENRNAVIMVDLAGDISPLL 272 L ++ E + ++ DL D L Sbjct: 611 SISHLKYYGEKKPRILKTDLEKDRENFL 638 >UniRef50_D1BUD4 DNA polymerase III, epsilon subunit n=1 Tax=Xylanimonas cellulosilytica DSM 15894 RepID=D1BUD4_XYLCX Length = 547 Score = 130 bits (326), Expect = 1e-28, Method: Composition-based stats. Identities = 47/187 (25%), Positives = 67/187 (35%), Gaps = 28/187 (14%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F D ET G P DR + A +R D+ + E + GA I GIT Sbjct: 49 FAVVDVETTGLSPRYDRVIEVAILRLDTNGRTVDEWST---RLNPQRTV--GATWIHGIT 103 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 + A + A AA++ T +G+N RFD R +D Sbjct: 104 DADV-AHAPSFADVAAQVAQRLT--GAVFVGHN-ARFDAGFVLAELTRAGWD------AP 153 Query: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190 + + W A + P+ S RL + A GI ++AH A+ D AT Sbjct: 154 EPTIWC---TQAASHHWLPDA----------SSRRLVDVAAAAGISLTHAHSALGDARAT 200 Query: 191 IAMAKLV 197 AM Sbjct: 201 AAMLTRY 207 >UniRef50_UPI000185C525 DNA polymerase III, epsilon subunit n=1 Tax=Corynebacterium amycolatum SK46 RepID=UPI000185C525 Length = 529 Score = 130 bits (326), Expect = 2e-28, Method: Composition-based stats. Identities = 48/256 (18%), Positives = 75/256 (29%), Gaps = 34/256 (13%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 62 +D +TF+ D ET G D + AI+T IG F Sbjct: 15 DDSLFNTTFVVVDLETTGLKAKNDHIIEIGAIKTR-GGKTIGTFSSF---IDPGMEIPDH 70 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 +TGIT + + + F + + +N +FD R D Sbjct: 71 ITSLTGITTADVETAPQLGTVITQFL--EFAR-GSVWVAHN-AKFDIGFLRQACTDLGLD 126 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHD 182 S D L + R + + SF+L L + G + AH Sbjct: 127 ------WPSPSVVDTLTLARRV-----------LDRSQVGSFKLSQLARYVGSPNRPAHR 169 Query: 183 AMADVYATIAMAKLVKTRQP--------RLFDYLFTHRNKHKLMALI-DVPQMKPLVHVS 233 A+ D AT+ + + R L Y T + + + D P V+V Sbjct: 170 ALDDAIATVDVLHYLMERLAVYEVQTASELVHYSPTVAPEVRAKRHLADGAPHTPGVYVF 229 Query: 234 GMFGAWRGNTSWVAPL 249 L Sbjct: 230 RSRNDDPLYIGTALDL 245 >UniRef50_C8WA42 DNA polymerase III, epsilon subunit n=1 Tax=Atopobium parvulum DSM 20469 RepID=C8WA42_ATOPD Length = 342 Score = 129 bits (325), Expect = 2e-28, Method: Composition-based stats. Identities = 37/197 (18%), Positives = 68/197 (34%), Gaps = 32/197 (16%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 K +++ D ET G + AA++ + + E GA Sbjct: 72 SKYPESYVVVDLETTGLDVHYCEIIEIAALKV-VDGKITEEFSSL---IHPPREIPSGAT 127 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFY-RNFYDP 123 I IT + + F V ++G+N++R+D V F+ R+F Sbjct: 128 AINHITNHMVKNAPTLDKVIPQ--FDTF-VKGFPLIGHNSLRYDAIVLEENFFRRDFLCD 184 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE-HSNAHD 182 Y W D + + P ++L ++ K ++ H AH Sbjct: 185 YVWY-----------DTYKLARQIL------------EPPYKLINIAKRLNVKQHGKAHR 221 Query: 183 AMADVYATIAMAKLVKT 199 A+AD Y T + + ++ Sbjct: 222 ALADCYMTYGIYEKMRE 238 >UniRef50_C1PF24 DnaQ family exonuclease/DinG family helicase n=1 Tax=Bacillus coagulans 36D1 RepID=C1PF24_BACCO Length = 930 Score = 129 bits (324), Expect = 2e-28, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 60/193 (31%), Gaps = 28/193 (14%) Query: 9 STFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 ++ D ET G DR QF+A+ + I + P P +T Sbjct: 2 QRYVVVDLETTGNSAKKGDRIIQFSAVVVE--GREIKTQFTSFVNPEKPV--PPFISELT 57 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 GI + A RI + + + +N + FD + + P+ Sbjct: 58 GIDNGMLEEAPVF-SEIAPRIMEILE--DSIFVAHNVL-FDLPFLQQELKAAGFPPF--- 110 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 R LD + P L S++L L + + H H A +D Sbjct: 111 ------RGPSLDTVEFSRIAFPT----------LNSYKLGDLADSLSLYHERPHRADSDA 154 Query: 188 YATIAMAKLVKTR 200 + T + + Sbjct: 155 FVTAKLLLACMEK 167 >UniRef50_UPI0001BCC2A4 DNA polymerase III PolC n=1 Tax=Enterococcus faecium DO RepID=UPI0001BCC2A4 Length = 663 Score = 129 bits (324), Expect = 3e-28, Method: Composition-based stats. Identities = 43/231 (18%), Positives = 78/231 (33%), Gaps = 28/231 (12%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 62 ++ ++T++ D ET G D + AA++ + NVI + F + Sbjct: 419 HEALSEATYVVFDVETTGLSAVYDTIIELAAVKM-YKGNVIESFDEF---IDPGHPLSRT 474 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 V +TGIT R ++E T ++ +N FD + R Sbjct: 475 TVDLTGITDGMVRGS-KSEEEVLRMFLEF--SKDTILVAHNAA-FDMGFLNTSYARYGIP 530 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHD 182 A ++D + L P+ F L L+K G+ H Sbjct: 531 EAANP---------VIDTLELARYLYPQ----------FKRFGLGVLSKKFGVSLEQHHR 571 Query: 183 AMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVS 233 A+ D AT +A + + L+ + + + +P HV+ Sbjct: 572 AIYDAEATGHLAWIFVKEAMDNHNMLYHDQLNEHIGEGDSYKRARPF-HVT 621 >UniRef50_Q83YZ1 DNA polymerase III alpha subunit n=1 Tax=Peanut witches'-broom phytoplasma RepID=Q83YZ1_PEWBP Length = 1492 Score = 129 bits (323), Expect = 4e-28, Method: Composition-based stats. Identities = 39/239 (16%), Positives = 77/239 (32%), Gaps = 30/239 (12%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 + ++ D ET G DR AA++ + I E P D + Sbjct: 401 KNHNYVVLDIETTGFSKTRDRIISIAAVKIQNG--KIIEYFDELINPGKDIKISNLIQRL 458 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 T I+ + K + + + + P ++ +N FD E + F Sbjct: 459 TNISDEILLNKPHIKEILSKFLDFIRDCPNCVLVAHN-ASFDIEFLQETFKNIGLY---- 513 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGI---EHSNAHDA 183 ++D + + + + F LE + K+ I H+A Sbjct: 514 -----WPLLPVIDTLTLAQKYFNKILKY---------FSLEKIVKSFKIKLDSEGQYHNA 559 Query: 184 MADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGN 242 + D AT + + + + F + L +D+ +P HV+ + +G Sbjct: 560 LFDARATALIFLEMLEQLEAQKIFNF-----YDLQGSLDIKFERPY-HVNIIVKNKKGY 612 >UniRef50_UPI0001698261 Exodeoxyribonuclease I n=1 Tax=Endoriftia persephone 'Hot96_1+Hot96_2' RepID=UPI0001698261 Length = 142 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 45/132 (34%), Positives = 67/132 (50%), Gaps = 8/132 (6%) Query: 343 VREKVVAIFAEAEPFTPSDNVDAQLYNG-FFSDADRAAMKIVLETEPRNLPALDITFVDK 401 ++ K+ + + + F P + D LY+G FFS+ DR M+ + ET L L F D Sbjct: 1 MQAKISRVH-QMKQFEPQTDPDLSLYSGPFFSEDDRRRMQQIRETPVDQLAGLHFAFDDA 59 Query: 402 RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVF------TPEFLQGYADELQMLVQQYA 455 R+ ++LF YRARN+P TL+ E+QRW E+R+ L Y +L +L Sbjct: 60 RLPEMLFRYRARNWPETLNETERQRWDEYRQTRLFDADGGGAIQLDEYLAQLDLLAADEG 119 Query: 456 DDKEKVALLKAL 467 E+ ALL L Sbjct: 120 LSAERRALLPKL 131 >UniRef50_B0VES4 Putative DNA polymerase III, epsilon subunit:DnaQ exonuclease (DnaQ-like) (DinG-like helicase) n=1 Tax=Candidatus Cloacamonas acidaminovorans RepID=B0VES4_9BACT Length = 960 Score = 128 bits (322), Expect = 4e-28, Method: Composition-based stats. Identities = 44/210 (20%), Positives = 66/210 (31%), Gaps = 27/210 (12%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 62 N +Q F+ D ET G + D Q A +R + V KP Sbjct: 16 NLPLEQLEFVAIDIETTGLNSEWDEIIQIAGMRFK--GEEVVNQFVSLVKPKGKV--PKF 71 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 +T I+PQE + + ++G+N + FD N Sbjct: 72 IEHLTHISPQEL-KTAPPIKEVLKDFCNFI--GDSILVGHN-IGFDFNFLNQFIVDNGGF 127 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHD 182 P + N WD ++ R + +L L GIE NAH Sbjct: 128 PIS------NMHWDTAEIGRIYLPFTTD-------------HKLSTLVSFFGIELMNAHQ 168 Query: 183 AMADVYATIAMAKLVKTRQPRLFDYLFTHR 212 A AD AT + + + Y+ R Sbjct: 169 ADADALATGKLFNALTNYILNHYGYMLNAR 198 >UniRef50_C0EF57 Putative uncharacterized protein n=1 Tax=Clostridium methylpentosum DSM 5476 RepID=C0EF57_9CLOT Length = 319 Score = 128 bits (321), Expect = 5e-28, Method: Composition-based stats. Identities = 32/206 (15%), Positives = 62/206 (30%), Gaps = 27/206 (13%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 + ++ D ET G P D + A+R + E KP D + +T Sbjct: 19 PTDYVVIDLETTGYDPHRDEIIELGALRIHEG--EVVESFSSLTKPQRDLDDY--IIQLT 74 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 GI+ + + + I+ +NV FD + + + Sbjct: 75 GISNEMLA----SAPELSDVFPRYLDFIGDSIVVGHNVHFDVNFIYDTCIKESLKLFTN- 129 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 DL+D++ L P+ L S +L ++ I H ++ D Sbjct: 130 --------DLVDLLWLSRKLLPD----------LTSHKLCRVSSHFNICVEGMHRSLFDC 171 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRN 213 T + + + + Sbjct: 172 KTTFECFEKCRILAKERYGQVDNLSQ 197 >UniRef50_Q2B3X2 ATP-dependent DNA helicase n=3 Tax=Bacillus RepID=Q2B3X2_9BACI Length = 934 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 35/209 (16%), Positives = 62/209 (29%), Gaps = 28/209 (13%) Query: 7 QQSTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 + ++ D ET G D+ QFAA+ +I + Sbjct: 1 MSNKYVVVDLETTGNSAKKGDKIIQFAAVVM-EGGKIIDQYSSL---LNPGKEIPAFIEE 56 Query: 66 ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA 125 +TG+ A A ++ L + +N + FD + + + Sbjct: 57 LTGLNDSMVSDAPVF-AEIAPKVMELLE--DAYFVAHNVL-FDLSFLQEELLDAGFPGF- 111 Query: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMA 185 ++D + + P S++L L+ GI H H A + Sbjct: 112 --------YGPVIDTVELARTVLP----------CSDSYKLSDLSAKEGIMHDRPHQADS 153 Query: 186 DVYATIAMAKLVKTRQPRLFDYLFTHRNK 214 D YAT + + R L K Sbjct: 154 DAYATAKLLHIFLERLEELPLTTIKQLLK 182 >UniRef50_C7RJN1 DNA polymerase III, epsilon subunit n=1 Tax=Candidatus Accumulibacter phosphatis clade IIA str. UW-1 RepID=C7RJN1_9PROT Length = 735 Score = 127 bits (320), Expect = 7e-28, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 66/212 (31%), Gaps = 27/212 (12%) Query: 2 MNDGKQQSTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 ++ T+ D ET G PA D Q A+R + + E + + Sbjct: 536 LDRPLSDLTYTVFDTETTGMEPAAGDEIIQIGAVRIVNGRLLRNENFDQLV--DPERFIR 593 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 P + I GI+ R + E +H T ++ +N FD + R Sbjct: 594 PEGIRIHGISDDMVRGQPNIE-VVLPALHDFCN--DTVLVAHNAA-FDMRFLQLKEERTG 649 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 +LD + L P S +L+ + + GI + Sbjct: 650 VAFSQ----------PVLDTLLLSGVLHPN----------QESHQLDSIAERLGIGIEDR 689 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDYLFTHR 212 H+A+ D AT + + ++ Sbjct: 690 HNALGDACATAEVFLKMLPLLAQMGITTLRQA 721 >UniRef50_B7CAB9 Putative uncharacterized protein n=1 Tax=Eubacterium biforme DSM 3989 RepID=B7CAB9_9FIRM Length = 525 Score = 127 bits (320), Expect = 8e-28, Method: Composition-based stats. Identities = 34/209 (16%), Positives = 58/209 (27%), Gaps = 27/209 (12%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 ++ D ET G DR + AI ++ V E P + A I Sbjct: 50 KRYVAFDVETTGLDSKKDRIIEVGAILFENGHTV--ETYSSLVNP--EVKISKEATTINH 105 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVP--KTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 IT K E + + + +N FD R YD Sbjct: 106 ITNGMV-KKAPTEDIVCKELVKFLGDALHEQTPICAHNADFDMSFLSQALMRQGYDAQIL 164 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 LD + + P GL +++ + K I++ H A++D Sbjct: 165 C----------LDTLSLSRKIIP----------GLSNYKQTTVAKHFNIKNKQEHRAISD 204 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKH 215 + + + + K Sbjct: 205 AEVCGEILWKLLSIKKDEEVKKLEILVKS 233 >UniRef50_B7GHT3 DNA polymerase III, epsilon subunit and Rad3-related DNA helicase n=1 Tax=Anoxybacillus flavithermus WK1 RepID=B7GHT3_ANOFW Length = 880 Score = 127 bits (319), Expect = 8e-28, Method: Composition-based stats. Identities = 46/228 (20%), Positives = 70/228 (30%), Gaps = 34/228 (14%) Query: 7 QQSTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 F+ D ET G P DR Q + + + + + + +P D Sbjct: 1 MNDRFVVVDIETTGNAPKKEDRIIQIGFVVIEGD--KVKKRFSTFVQPERDIPL--FIQQ 56 Query: 66 ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA 125 +TGI + A + + +N V+FD + F R+ P Sbjct: 57 LTGIDHAMVHDAPPFQHIAAMLVEQW---EGAYFVAHN-VQFDWAFLQEEFIRSGIQPPT 112 Query: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMA 185 LLD + L P S++L HL +A H H A Sbjct: 113 CR---------LLDTVELARFLMPT----------QSSYKLNHLAEALSFAHDRPHQADY 153 Query: 186 DVYATIAMAKLVKTRQPRLFDYLFTHRN------KHKLMALIDVPQMK 227 D AT + + + RL K L AL+D K Sbjct: 154 DAEATAQLLLFLLHKLSRLPLVTLKQLRRHSQPLKSDLTALLDQFIAK 201 >UniRef50_A8UAR2 DNA polymerase III, epsilon subunit/ATP-dependent helicase DinG n=1 Tax=Carnobacterium sp. AT7 RepID=A8UAR2_9LACT Length = 939 Score = 127 bits (319), Expect = 9e-28, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 65/200 (32%), Gaps = 28/200 (14%) Query: 5 GKQQSTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 63 + T+ D ET G + A DR QF + + + V+ Sbjct: 1 MNHKDTYAVVDIETTGGNVASGDRMIQFGCVLLEGD-QVVHRFAT---NINPLTSIPKQI 56 Query: 64 VLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 +TG++ + E AA I++L I+ +N ++FD R Sbjct: 57 EHLTGLSNKTVAQAPYFE-DIAATIYNLL--DGCIIIAHN-IQFDYTFLSAELQRCGMPA 112 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDA 183 +D + L P S+RL L IEH+N H A Sbjct: 113 LQNKG---------IDTVELAQVLLPTE----------SSYRLNDLVSKFNIEHTNPHQA 153 Query: 184 MADVYATIAMAKLVKTRQPR 203 +D T + ++K + Sbjct: 154 DSDAAVTAELFLVLKQKLKE 173 >UniRef50_C9KN36 Helicase, UvrD/REP/exonuclease family protein n=1 Tax=Mitsuokella multacida DSM 20544 RepID=C9KN36_9FIRM Length = 874 Score = 127 bits (319), Expect = 1e-27, Method: Composition-based stats. Identities = 43/215 (20%), Positives = 74/215 (34%), Gaps = 26/215 (12%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 ++ + + + D E G P D Q A +R + E + + Sbjct: 503 VLLEAFEAENIVVFDVEATGVDPTRDEIIQIAGLRLGRDGKAKAEFK----RLLRARRSV 558 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 + + I+ + +GE E R F I+G+N V +D + + R Sbjct: 559 GDSYRVHKISDAILQQEGE-EPEAVLREFCAFAE-GAVIVGHN-VTYDLSILGSELARLG 615 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 P ++ +D LD+ R Y LP+ +LE+L + + H + Sbjct: 616 LPPLSYQ-----RYYDTLDIFRRFYP-------------NLPNHKLEYLGEFCKVSHRST 657 Query: 181 HDAMADVYATIAMAKLVKTRQPR-LFDYLFTHRNK 214 HDAM DV AT + + R K Sbjct: 658 HDAMDDVCATAEILTYAIEKNIRPHVGERREFMAK 692 >UniRef50_Q6KIN3 DNA polymerase III alpha subunit n=1 Tax=Mycoplasma mobile RepID=Q6KIN3_MYCMO Length = 1433 Score = 127 bits (318), Expect = 1e-27, Method: Composition-based stats. Identities = 39/213 (18%), Positives = 71/213 (33%), Gaps = 33/213 (15%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 + T++ D ET G P D +F A + + + + F+ KP + LI Sbjct: 396 KNETYVVFDLETTGLSPIFDDIIEFGAQKILNG--KVIDTLQFFVKPNKE--ISEKITLI 451 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 TGI Q+ +E +I ++ +N FD + Sbjct: 452 TGIKNQDVEN-AISEKEALKKILEFM--GDHTVVAHN-ATFDMNFINEKIEK-------- 499 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGI--EHSNAHDAM 184 + S ++D + + PE F LE+L +GI + AH A Sbjct: 500 -YNFQESNLQIIDTLVVSKIIEPEA----------KKFSLENLASRSGIIYNSTEAHRAD 548 Query: 185 ADVYATIA----MAKLVKTRQPRLFDYLFTHRN 213 D + + + FD ++ ++ Sbjct: 549 YDADVLAKVWNLYIQKLSDMNVKYFDDIYNFKS 581 >UniRef50_B3R8V7 DNA polymerase III, epsilon subunit + GIY-YIG endonuclease (Modular protein) n=2 Tax=Burkholderiales RepID=B3R8V7_CUPTR Length = 532 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 37/193 (19%), Positives = 57/193 (29%), Gaps = 29/193 (15%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 +F D ET G DR + + + I E E P Sbjct: 27 AALSRPIVFVDLETTGADAQRDRITEIGVVEVGPDG--IVEWETL---LDPGMSIPPFIQ 81 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 +TGI+ R + E+ + L + +N RFD +N F R Sbjct: 82 RMTGISDDMVRGQPTFESLAESLAERL---QGRLFVAHN-ARFDYGFLKNAFRRAGVT-- 135 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 R D+L +R +L P L+ L G+ H A+ Sbjct: 136 --------FRADVLCTVRLSRSLFPSVER----------HGLDALIARFGLTPKGRHRAL 177 Query: 185 ADVYATIAMAKLV 197 AD + + Sbjct: 178 ADAELLWQFWQKI 190 >UniRef50_B0S1A9 DNA polymerase III alpha subunit n=3 Tax=Clostridiales Family XI. Incertae Sedis RepID=B0S1A9_FINM2 Length = 1421 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 37/242 (15%), Positives = 71/242 (29%), Gaps = 29/242 (11%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 D F+ D ET G A ++ + A++ + ++ E + Sbjct: 393 PYDSMNLREFVVFDIETTGLSNATEKITEIGAVKI-VDNKIVDEFNQL---INPEIPIPE 448 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 +T IT + + + +A + C L +N FD + Sbjct: 449 KITELTSITNEMVKDMPKIDAV----LPEFLKFVGDCTLIAHNADFDMGFIKKNCIDLGI 504 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 +P +D + AL P L + +L+ LTK + N H Sbjct: 505 NPVRT----------YIDTLAFARALEP----------HLKNHKLDTLTKKYNVNLFNHH 544 Query: 182 DAMADVYATIAMAKLV-KTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR 240 A D AT + + + R F + ++ ++ + G Sbjct: 545 RACDDARATGEVFICMVNNLEQRGFKFDININQMDSDWSISKRESHTATIYAKNLIGLKN 604 Query: 241 GN 242 Sbjct: 605 LY 606 >UniRef50_A8RD59 Putative uncharacterized protein n=2 Tax=unclassified Erysipelotrichaceae RepID=A8RD59_9FIRM Length = 1447 Score = 126 bits (317), Expect = 2e-27, Method: Composition-based stats. Identities = 36/195 (18%), Positives = 62/195 (31%), Gaps = 30/195 (15%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 ++ T+ D ET G D +F + + + KP V + Sbjct: 395 EEGTYCVFDLETTGLSSRFDHIIEFGGQIVKDRTCI--KSLQLFIKPP--VPIPAHIVEL 450 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 TGI+ + R ++ A A +I + ++ +N FD + R P Sbjct: 451 TGISEEHVRN-AKSFAECADQILDFI--GDSILVAHN-ADFDYNFLNSELVRIGRKPL-- 504 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSN--AHDAM 184 DN D LD+ R + +RL + ++ GI + AH A Sbjct: 505 ----DNPVIDTLDLAR--------------SMQDRKGYRLGQIARSYGIRYDEDVAHRAD 546 Query: 185 ADVYATIAMAKLVKT 199 D + Sbjct: 547 YDAEVLANTYMNMLN 561 >UniRef50_Q67M39 DNA polymerase III-like protein n=1 Tax=Symbiobacterium thermophilum RepID=Q67M39_SYMTH Length = 390 Score = 126 bits (316), Expect = 2e-27, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 70/208 (33%), Gaps = 25/208 (12%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 + D ET G R Q + I + + D + A+ + + Sbjct: 23 NLVVIDTETTGLEYDQHRIIQIGVVAIKE--QRIVKTWESKLRLIDGEV-SAYAMQVNRL 79 Query: 70 TPQEARAKGENEA-AFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 P + R++ A ++ F P +LG +N+ FD + F R+ + ++ Sbjct: 80 DPSDMRSEKYPHPKAVLRKLQEEFLRPG-VLLGAHNLSFDLGFLQAEFARHGLPQWQGNF 138 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 +D M AL P+ S LE L + +E + HDA+AD Sbjct: 139 ---------VDSMALGRALLPDL-----------SASLESLARHFRVELTQHHDALADAV 178 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHK 216 AT + + + + + Sbjct: 179 ATAHVLLHLLDLAQQRGLDPLNLLIERQ 206 >UniRef50_A5KMD9 Putative uncharacterized protein n=5 Tax=Clostridiales RepID=A5KMD9_9FIRM Length = 279 Score = 125 bits (315), Expect = 2e-27, Method: Composition-based stats. Identities = 46/277 (16%), Positives = 86/277 (31%), Gaps = 36/277 (12%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 +++ D ET G P + + A++ + E + + KP + L P +TG Sbjct: 37 KSYIAFDLETTGLDPMNNEIIEIGALKVRDG--KVSERFMEFIKPQE--LISPAITGLTG 92 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 I+ + + I + ++G+N + FD T+ R Sbjct: 93 ISNDMVASARPARSVITDFIDF---CEEDILIGHNII-FDYSFTKCTAAREGLPFEKMG- 147 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 +D ++ + PE L S L L + IE+ AH A D Sbjct: 148 ---------IDTLKIAKKVHPE----------LESKSLSALCEHYKIENKAAHRAYFDAL 188 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 AT + + + F + K L + + + + Sbjct: 189 ATAKLYQTLSHYFEPDNPKTFKPSQLTYKIRKPQPATPKQLALLERLTKNKKTFS----- 243 Query: 249 LAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYT 285 H + L+ + L D+ L +RL Sbjct: 244 ---HNTEAFSCNAEALSYNPETLSRSDASRLIDRLLK 277 >UniRef50_C7LWI5 DNA polymerase III, epsilon subunit n=2 Tax=Deltaproteobacteria RepID=C7LWI5_DESBD Length = 244 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 39/193 (20%), Positives = 61/193 (31%), Gaps = 16/193 (8%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 + D E G + A+R V GE +P+ + LI IT Sbjct: 46 YTVLDTELTGLSARREEIVSIGAVRVRGLAIVPGESFSVLVRPS--IPLPKTSTLIHRIT 103 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 P+ A A+ A + T I+G++ V D +N P A Sbjct: 104 PE-AIAQAPPLAEVLPELIEF--CKGTLIVGHH-VGLDMSFLNRACRKNHGQPLANPC-- 157 Query: 131 DNSRWDLLDVMRACYALRPEGIN-WPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 LD MR R + E + S+ L L + AH+A+ D Sbjct: 158 -------LDTMRMAMLWREKRTPSHYEQFNLSISYVLTDLAHEFDLPRFTAHEALGDALQ 210 Query: 190 TIAMAKLVKTRQP 202 T + + + Sbjct: 211 TAYLFIYLAKKIA 223 >UniRef50_C2ES78 DNA-directed DNA polymerase III epsilon subunit n=3 Tax=Lactobacillus RepID=C2ES78_9LACO Length = 960 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 46/224 (20%), Positives = 74/224 (33%), Gaps = 32/224 (14%) Query: 9 STFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 + D ET GT DR Q + + +I E K +T Sbjct: 23 PIYSVVDLETTGTSVNHGDRIIQVGCVLV-QDGEIINHFET---KINPRVAVPRHITQLT 78 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 GI + R E A ++SL + T + +N V FD R Y + Sbjct: 79 GIKNNDVRNAPLFE-DIAGTLYSLLS--GTIFVAHN-VNFDFPFLNAELERAGYPSLS-- 132 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 +D + L P S+RL LT + IEH + H A++D Sbjct: 133 -------IKAIDTVTLSQILMPTV----------KSYRLRDLTSSLSIEHDHPHSAVSDA 175 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVH 231 AT + + + L + + +++PQ +V Sbjct: 176 EATAHLLVDLMKQLRELPTLTL----EKLVELKLNLPQQTTMVL 215 >UniRef50_A5VK04 DnaQ family exonuclease/DinG family helicase, putative n=11 Tax=Lactobacillales RepID=A5VK04_LACRD Length = 954 Score = 125 bits (315), Expect = 3e-27, Method: Composition-based stats. Identities = 51/227 (22%), Positives = 76/227 (33%), Gaps = 32/227 (14%) Query: 6 KQQSTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 K+ + D ET GT+ DR Q + + +I E K V Sbjct: 14 KKAPIYSVVDLETTGTNVNHGDRIIQIGCVLV-QDGEIINHFET---KINPREKIPRSIV 69 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 +TGI ++ R E A I+SL T + +N V FD R Y Sbjct: 70 QLTGIEDKDVRKAPLFE-DIAGTIYSLLAE--TTFVAHN-VNFDFPFLNAELERAGYPSL 125 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 + +D + L P SFRL LT + IEH + H A+ Sbjct: 126 S---------IPAIDTVTLSQILLPTA----------KSFRLRDLTSSLHIEHDHPHSAV 166 Query: 185 ADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVH 231 +D AT + + R L + +++PQ V Sbjct: 167 SDAEATADLLNDLLKRVQELPTLTL----EKITQLKLNLPQQTAGVF 209 >UniRef50_D1R5I0 Putative uncharacterized protein n=1 Tax=Parachlamydia acanthamoebae str. Hall's coccus RepID=D1R5I0_9CHLA Length = 231 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 42/203 (20%), Positives = 63/203 (31%), Gaps = 28/203 (13%) Query: 12 LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITP 71 L++D ET G D + A D N E P A I IT Sbjct: 4 LYYDTETTGIKADRDYVIELA--VYDPVGNRTFERL-----INPGVPIPPEATAIHHITD 56 Query: 72 QEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHD 131 + + F ++ +NN +FD RN F R+ + Sbjct: 57 EMVAN-APSFGEIIEEF-KEFCSGDVVLIAHNNDQFDIHFLRNEFKRS---------NQE 105 Query: 132 NSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATI 191 W LD ++ R + LP L+ L GI +NAH A+ DV Sbjct: 106 LPPWKFLDTLKWARRYRND----------LPRHTLQFLRGIYGIAENNAHRALDDVIVLH 155 Query: 192 AMAKLVKTRQPRLFDYLFTHRNK 214 + + Y ++ K Sbjct: 156 QVFSAMLDDLSIAEAYALMNQPK 178 >UniRef50_C7TCP7 DNA helicase n=8 Tax=Lactobacillus RepID=C7TCP7_LACRG Length = 933 Score = 125 bits (314), Expect = 3e-27, Method: Composition-based stats. Identities = 48/199 (24%), Positives = 65/199 (32%), Gaps = 28/199 (14%) Query: 5 GKQQSTFLFHDYETFGTHPA-LDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 63 +TF D ET GT DR QF I + P D Sbjct: 1 MNADTTFAVVDLETTGTSVKDGDRMIQFGCALVRHG--KIIQTISQMINP--DRSVPQTI 56 Query: 64 VLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 +TGI+P+ A + A +H + T T + +N V FD F R Sbjct: 57 QRLTGISPERLVAAPYFD-EVAPALHQVLTK--TVFVAHN-VNFDYPFLNAEFERIGLPK 112 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDA 183 +D + L PE SFRL LT I+H N H A Sbjct: 113 LQLE---------AIDTVELAQVLLPEI----------SSFRLSDLTTHFAIQHDNPHQA 153 Query: 184 MADVYATIAMAKLVKTRQP 202 +D +T + +K R Sbjct: 154 DSDATSTAKLLLQLKARFQ 172 >UniRef50_Q049V0 DNA polymerase III, alpha subunit (Gram-positive type) n=3 Tax=Lactobacillus delbrueckii RepID=Q049V0_LACDB Length = 1411 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 36/207 (17%), Positives = 63/207 (30%), Gaps = 28/207 (13%) Query: 2 MNDGK-QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 K + F+ D ET G D + A++ VI + F + Sbjct: 382 PASMKYEDQEFVIFDVETTGLSSVYDTIIEIGAVKMK-NGEVIDRFDKF---INPHHPLS 437 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 + +T IT + +A +EA + + C G+N V+FD R Sbjct: 438 ETTINLTSITDEMVQAAD-DEAVVIKQFMDFYGNDPLC--GHN-VQFDVGFVDAALKRCG 493 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Y + ++D + L PE L+ L + + + Sbjct: 494 YPEISQP---------VVDTLEVSRLLHPE----------QSRHTLDSLCRKYNVALEHH 534 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFDY 207 H A D AT + + + Sbjct: 535 HRANQDAEATGYLMFKLLDAFNDKYHE 561 >UniRef50_A0QF17 DNA polymerase III, epsilon subunit n=7 Tax=Actinomycetales RepID=A0QF17_MYCA1 Length = 643 Score = 125 bits (314), Expect = 4e-27, Method: Composition-based stats. Identities = 36/211 (17%), Positives = 65/211 (30%), Gaps = 28/211 (13%) Query: 5 GKQQSTFLFHDYETFG---THPAL---DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 58 + +TF+ D ET G T D + A++ + V+GE Sbjct: 34 ALRDTTFVVVDLETTGGRSTSTGETAPDAITEIGAVKVR-DGVVLGEFATL---VDPQRS 89 Query: 59 PQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYR 118 P + +TGIT +A + ++ +N FD R + Sbjct: 90 IPPQIMRLTGITTAMVSDAPAIDAVLPMFLEFAGLDRGAVLVAHN-AGFDVGFLRAAAQQ 148 Query: 119 NFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHS 178 R +L +R + + + PS RL L + + Sbjct: 149 -------CDIAWPRPR--VLCTVRLARRV--------LSREEAPSVRLASLARLFAVTTQ 191 Query: 179 NAHDAMADVYATIAMAKLVKTRQPRLFDYLF 209 H A+ D AT+ + + R + + Sbjct: 192 PTHRALDDARATVDVLHALIERVGNQGVHTY 222 >UniRef50_B9XHY8 DNA-directed DNA polymerase n=1 Tax=bacterium Ellin514 RepID=B9XHY8_9BACT Length = 199 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 38/226 (16%), Positives = 63/226 (27%), Gaps = 35/226 (15%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 ++ D ET G D Q AA+R + V+ + F+ Sbjct: 1 MHQDYVIFDLETTGLSSYQDEIIQIAAVRMSNG--VVCSSDSFFSYVNPGRSISSFITSY 58 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 TGIT Q+ K ++ +N RFD + RN Sbjct: 59 TGITNQDVGDAPRV-GTVLKDFSRY--AGKATLIAHNGHRFDMKFLHAGCSRNALP---- 111 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHS--NAHDAM 184 + D + + R + P G L+ + I + HDA Sbjct: 112 --TRAVNYHDSIYLSRLVWGKCPGG------------HGLDSVLNRLQISNHGVRRHDAR 157 Query: 185 ADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLV 230 DV + + R + +L L + P + Sbjct: 158 GDVELLAEAVEKMWHL----------LRERAELKPLALHQGVLPCL 193 >UniRef50_D0MI24 DNA polymerase III, epsilon subunit n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MI24_RHOM4 Length = 565 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 39/196 (19%), Positives = 62/196 (31%), Gaps = 28/196 (14%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 +F+ D ET G+ PA DR + AA+R ++ P +TGI Sbjct: 7 SFVVVDTETTGSGPA-DRIIELAAVRV-QGGRIVERFATL---INPGRSVPPFITRLTGI 61 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 T + + ++ +N + FD ++ R Sbjct: 62 TTAMLVGR-PSADEVLPDFLDFL--GDGVLVAHN-LAFDRKMLEAELQRIGL------AW 111 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 N L R L P GLP+ L+ L + I N H A+ D A Sbjct: 112 PGNPALCTL---RLARRLLP----------GLPAKGLDGLIRFYQIPVENRHRALGDAEA 158 Query: 190 TIAMAKLVKTRQPRLF 205 T + + R + Sbjct: 159 TAHVLLRLLEEARRQY 174 >UniRef50_B1YHQ6 DnaQ family exonuclease/DinG family helicase n=2 Tax=Exiguobacterium RepID=B1YHQ6_EXIS2 Length = 937 Score = 125 bits (313), Expect = 4e-27, Method: Composition-based stats. Identities = 50/241 (20%), Positives = 80/241 (33%), Gaps = 34/241 (14%) Query: 7 QQSTFLFHDYETFGTH-PALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 + F+ D ET G + D + + I E + +P P Sbjct: 1 MEKKFVVVDLETTGHSIKSGDEMIEIGVAVIEDG--QITERLSAFVRPQKP--IPPFISQ 56 Query: 66 ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA 125 +TGIT ++ A+ E+ A A R+ L + +N V+FD Y PY Sbjct: 57 LTGITDEDV-AQAESFATIAPRVLQLL--DGGVFVAHN-VQFDLTFLNEALEEEGYLPYT 112 Query: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMA 185 ++D + L P S L HLT+A + H AH A + Sbjct: 113 GP---------VIDTVELARILLPTA----------ESHSLSHLTEALQLTHHEAHRAGS 153 Query: 186 DVYATIAMAKLVKTRQPRLFDYLFTHRNK------HKLMALIDVPQMKPLVHVSGMFGAW 239 D AT + + TR L H + + +D + F ++ Sbjct: 154 DAEATAELLLHLLTRLQDLPLDTLRHLRRLAGKLFSAIEQEVDQAIQTVGLEPDDRFDSF 213 Query: 240 R 240 R Sbjct: 214 R 214 >UniRef50_UPI0000510268 hypothetical protein BlinB_15797 n=1 Tax=Brevibacterium linens BL2 RepID=UPI0000510268 Length = 581 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 40/195 (20%), Positives = 69/195 (35%), Gaps = 24/195 (12%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 + TF+ D ET GT + A++T V+GE + KP ++ + P + Sbjct: 27 HEVTFVIVDLETTGTTAGKSEITEIGAVKTR-GGEVLGEFQSL-VKP-EESVISPFVARL 83 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 TGIT + + + ++ +N FD R+ + Y W Sbjct: 84 TGITHAMVDDAPSIRSVLPSFLEF---CVGAVLVAHN-APFDIGFIRSACEKL---DYHW 136 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 +LD + + + D + + +L L G E S H A++D Sbjct: 137 PQPT------VLDTVTLSRRV--------VSRDEVRNHKLSTLAAHFGTEVSPDHRALSD 182 Query: 187 VYATIAMAKLVKTRQ 201 AT + V R Sbjct: 183 AKATGEVLHRVLERF 197 >UniRef50_C3RL58 DNA-directed DNA polymerase n=4 Tax=Bacteria RepID=C3RL58_9MOLU Length = 1440 Score = 125 bits (313), Expect = 5e-27, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 70/223 (31%), Gaps = 37/223 (16%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 + +T++ D ET G D +F A++ VI ++F Sbjct: 397 SIEHATYVSFDLETTGLSVIHDGITEFGAVKIK-NGEVIDRLQMF---VNPGKSISSRIT 452 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 +T IT R + +A RI F ++ +N FD RN Sbjct: 453 NLTSITNDMVRNEPTIDA-LLPRIIEFF--DDCILVAHN-ANFDIGFLNENLRRNNMPEI 508 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKAN--GIEHSNAHD 182 N D L + RA + S+RL ++ ++ + AH Sbjct: 509 T------NPIIDSLALARAI-------------LKPMKSYRLGNVCRSYRVNYDDEVAHR 549 Query: 183 AMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQ 225 A D + ++ + K+ L+ L ++ Sbjct: 550 ADYDAEVLGDVFNMMLHQ--------IMQSGKYNLLDLCELTG 584 >UniRef50_A3XHM4 DNA polymerase III, epsilon subunit n=1 Tax=Leeuwenhoekiella blandensis MED217 RepID=A3XHM4_9FLAO Length = 221 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 35/192 (18%), Positives = 59/192 (30%), Gaps = 19/192 (9%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 +++ F+ D ET GT+ DR A+ + Y K + AV I Sbjct: 32 EEARFVVFDTETTGTNAREDRMLSIGALELKGNKISLSSSFELYVKQE---VFNEEAVAI 88 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 GI + + K +E ++G++ V FD + R Sbjct: 89 HGILRENRKYKKVSEEEAVKAFLEFI--GDAILVGHH-VGFDIGIINYALKRLGAPKLKN 145 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 + L ++ D + L+ L + I ++ H AM D Sbjct: 146 KFTDTG-------------VLYKRTVHLVNITDPNKVYTLDDLCEELNIAKTDRHKAMGD 192 Query: 187 VYATIAMAKLVK 198 Y T V Sbjct: 193 AYITALAFLKVM 204 >UniRef50_Q63DJ0 ATP-dependent DNA helicase n=74 Tax=Bacillus RepID=Q63DJ0_BACCZ Length = 934 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 39/233 (16%), Positives = 70/233 (30%), Gaps = 35/233 (15%) Query: 7 QQSTFLFHDYETFGTHPA--LDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 ++ D ET G D+ Q AA+ + I E + P + P Sbjct: 1 MSKRYVVVDLETTGNSWKDGKDKITQIAAVVVEDG--EILEIFSSFINPKRE--IPPFIT 56 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 +TGI + + A + L + +N V FD + Y Sbjct: 57 ELTGIDESMVKQAPLFQ-DVAPMVVELLQ--GAAFVAHN-VHFDWNFLTEELRQAGYTEI 112 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 +D + L P S++L L K + +EH H A Sbjct: 113 HCPK---------VDTVELAQILLPTA----------DSYKLRDLAKQHELEHDQPHRAD 153 Query: 185 ADVYATIAMAKLVKTRQPR------LFDYLFTHRNKHKLMALIDVPQMKPLVH 231 +D AT + + Y + + + ++ +K ++H Sbjct: 154 SDALATAELFLQFLNEIEKLPLVTLQSLYELSDVFQSDIADVLSENILKKMMH 206 >UniRef50_C9RIR1 DNA polymerase III, epsilon subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RIR1_FIBSS Length = 215 Score = 124 bits (312), Expect = 5e-27, Method: Composition-based stats. Identities = 32/208 (15%), Positives = 62/208 (29%), Gaps = 22/208 (10%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFN------VIGEPEVFYCKPADDYLPQP 61 F+ D ET G D + A++ E + KP L Sbjct: 5 PPKFVAFDLETTGLVNRKDEIIEIGAVKFTVEVKNGRVVPKLISEFDTLVKPN--MLIPA 62 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 A + IT + + + F P + +L +N FD R + +N Sbjct: 63 EATNVNHITDKMVEN-APPVGEALKQFTA-FCGPGSILLAHN-ANFDASFLRTAYEQN-- 117 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 + N D L + + PE N + ++ I+ H Sbjct: 118 ----PQFTPGNPVVDSLAISKTI---MPELANHKLGFMANMFMKRGEISMT--IDEEKMH 168 Query: 182 DAMADVYATIAMAKLVKTRQPRLFDYLF 209 ++ D + + + R+ + ++ Sbjct: 169 RSVYDCEMLMEVFVALLRRRLKEKEWEM 196 >UniRef50_Q38X67 Putative ATP-dependent helicase, DinG family n=1 Tax=Lactobacillus sakei subsp. sakei 23K RepID=Q38X67_LACSS Length = 944 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 42/211 (19%), Positives = 69/211 (32%), Gaps = 28/211 (13%) Query: 5 GKQQSTFLFHDYETFGTH-PALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 63 +++ + D ET GT+ DR QF + I + P D Sbjct: 1 MNRETIYAVVDLETTGTNIKDGDRIIQFGCALVQNG--KIIQTISQDVNPLRDV--PTKI 56 Query: 64 VLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 +T IT + E A + + + T + +N + FD R P Sbjct: 57 QHLTHITADQLELAPIFE-DLAPTLVEILS--GTVFVAHN-INFDLPFLNGELTRVGLQP 112 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDA 183 + +D + + PE PS+RL+ LT+ IEH N H A Sbjct: 113 LDLAG---------IDTVELAQIILPEA----------PSYRLQDLTQLLEIEHDNPHQA 153 Query: 184 MADVYATIAMAKLVKTRQPRLFDYLFTHRNK 214 +D T + + R L ++ Sbjct: 154 DSDALVTAKLFLKLSARLQALPSVTLNRLSE 184 >UniRef50_C6CUG6 DnaQ family exonuclease/DinG family helicase n=4 Tax=Paenibacillus RepID=C6CUG6_PAESJ Length = 953 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 38/204 (18%), Positives = 64/204 (31%), Gaps = 27/204 (13%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 F D ET G + D Q D ++ E + +P +TGI Sbjct: 2 KFAVLDLETTGHSVS-DDILQVGLAVLDDNLEIV-ETYSSFVRPT--IEIPAFITQLTGI 57 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 E + I L ++ +N V FD R Y P+ Sbjct: 58 DADMVADAPELDEVLMQLIPYL---EDAVLVAHN-VNFDAGFLNQALDRCGYHPFI---- 109 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 R D ++++R Y + +++L +T+ GI H H A +D A Sbjct: 110 --GRRLDTIELLRILYP-------------SITTYQLGAVTELFGIAHDQHHRADSDAIA 154 Query: 190 TIAMAKLVKTRQPRLFDYLFTHRN 213 T + + +L + Sbjct: 155 TAELFAQSVQKLRQLPLLTLQRLS 178 >UniRef50_Q8EUK5 DNA polymerase III subunit alpha n=1 Tax=Mycoplasma penetrans RepID=Q8EUK5_MYCPE Length = 1458 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 28/231 (12%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 +T++ D ET G P D+ +F AI+ V E + P + I Sbjct: 417 SDATYVIFDIETTGLSPYYDKIIEFGAIKYHKGVQV--ESIQMFINPEEK--ISDKIFAI 472 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 T I+ ++ + + +I + ++ +N ++FD N D Sbjct: 473 TKISNEDVKDALKI-KEALVKIKDFI--GDSVLIAHNGIKFDLPFLNCKLEENKMD---- 525 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGI--EHSNAHDAM 184 N D L + RA + + L + + I + + AH A Sbjct: 526 --IIKNPLIDTLQISRAIN-------------EQIHGHSLGVIARKYKIDYDETQAHRAD 570 Query: 185 ADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGM 235 D + + K + Q N + + L+ V Sbjct: 571 KDAEYLLNIWKRMLENQKLQDIKTLNEINSNLQNDFLRERNRGSLITVYCK 621 >UniRef50_A5IXK4 DNA polymerase III alpha subunit n=1 Tax=Mycoplasma agalactiae PG2 RepID=A5IXK4_MYCAP Length = 1459 Score = 124 bits (312), Expect = 6e-27, Method: Composition-based stats. Identities = 37/212 (17%), Positives = 68/212 (32%), Gaps = 27/212 (12%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 + N + +++ D ET G P +F A+ + + +GE F+ KP Sbjct: 415 VPNGNFKDYSYVSFDIETTGLSPKFHEIIEFGAVDINQDLK-VGEVTQFFIKP--QAKIG 471 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 +TGIT Q ++G + RI+ + +N +FD + F N Sbjct: 472 AFTTELTGITQQMLDSEGLSIKDGLQRIYDCL--DGKVAIAHN-AKFDFNFLKEQFRLNN 528 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSN- 179 ++D + A P +LE +T G+ + Sbjct: 529 VPF---------PNVTVIDTLIASRIGFPN----------YKRHKLEDVTSRLGVVYDPN 569 Query: 180 -AHDAMADVYATIAMAKLVKTRQPRLFDYLFT 210 AH D + + + + F Sbjct: 570 VAHRGDYDAKVLANVWVNIISELNSKNIFTFE 601 >UniRef50_C4KA24 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4KA24_THASP Length = 769 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 33/220 (15%), Positives = 63/220 (28%), Gaps = 27/220 (12%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLP 59 + + + ++ D ET G +P+ D Q A R + + E + Sbjct: 569 LDDRLLSELSYTVFDTETTGLNPSQGDEIIQVGATRILNGKLLRAESFEQLV--DPERPL 626 Query: 60 QPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRN 119 P + I GIT + R + + A H+ T ++ +N FD + Sbjct: 627 APESAKIHGITSEMLRGQPTIDKVLPA-FHAFAA--DTVLIAHNAA-FDMRFLQ------ 676 Query: 120 FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSN 179 ++D + + P S RLE + + G+ Sbjct: 677 ----LKEEQTGLRFDHPVIDTLLLSAVVHPN----------QESHRLEAIAERLGLTIVG 722 Query: 180 AHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMA 219 H A+ D T + + + Sbjct: 723 RHTALGDAIVTAEVFLKLIPLLAEKGIRTLRDAREAAEKT 762 >UniRef50_B9KXM0 DNA polymerase III, epsilon subunit n=2 Tax=Thermomicrobia (class) RepID=B9KXM0_THERP Length = 693 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 66/197 (33%), Gaps = 27/197 (13%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 +F+ D ET G PA R + A+R + V E P V +T Sbjct: 83 PRSFVALDVETTGLRPARHRIIEIGAVRYEDGCCV--ERFSVLVNPHRRLPVY--IVRLT 138 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 GI ++ + AA + ++GYN V FD + R P Sbjct: 139 GIRDEDLL-TAPSFVDVAAAFRVFLGE--STVIGYN-VGFDLDFLNAELRRIGQGPL--- 191 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 N D+L + RA + L+ + ++ G+ H A+ D Sbjct: 192 ---PNPALDVLPLARA-------------LLTANGRYDLDAICRSIGLARGTRHRALPDA 235 Query: 188 YATIAMAKLVKTRQPRL 204 AT + + R ++ Sbjct: 236 EATAVLYLHLVERAEQV 252 >UniRef50_A8EU91 DNA polymerase III, epsilon subunit n=5 Tax=Epsilonproteobacteria RepID=A8EU91_ARCB4 Length = 247 Score = 124 bits (311), Expect = 7e-27, Method: Composition-based stats. Identities = 52/268 (19%), Positives = 96/268 (35%), Gaps = 34/268 (12%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 ++ D ET G DR QF A+ D++ V + P L A+ + IT Sbjct: 4 YVLFDTETTGA-AQEDRVIQFGAMIVDNKGKVEA-FDELCSAPIPIKL---EAMEVHNIT 58 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 P K + + + ++ +N + FD ++ + + N Sbjct: 59 PDLLENKPKAVETNFYKRLEELNSDENYLIAHN-INFDLDMIKKEGFEN----------- 106 Query: 131 DNSRWDLLDVMRACYALRPE----GINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 + L+D +R L + + + L F E+ GI AHDA+ D Sbjct: 107 ---SYKLIDTLRCAKHLFSDLPYHRLQYLRYALDLYKFE-ENEASKYGITI-KAHDAIGD 161 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRG-NTSW 245 V + + ++ L + + L+++ P+ + FG ++G N Sbjct: 162 VLVMKLFLSKLVGKCREVYPSL------NPMEKLVELTT-TPVFINTFKFGKYKGQNIEE 214 Query: 246 VAPLAWHPENRNAVIMVDLAGDISPLLE 273 VA + + N M DL D+ L+ Sbjct: 215 VAKIDANYLNWMRTSMNDLDEDMKFTLD 242 >UniRef50_Q0A6Z2 Putative PAS/PAC sensor protein n=1 Tax=Alkalilimnicola ehrlichii MLHE-1 RepID=Q0A6Z2_ALHEH Length = 714 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 40/232 (17%), Positives = 69/232 (29%), Gaps = 36/232 (15%) Query: 10 TFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 +F+ D E G +P D A +R + + GE P PG+V G Sbjct: 508 SFVVFDCEMTGLNPEGGDEIISIAGVRVVNGRVLTGETFDRIINP--GRPIPPGSVRFHG 565 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 IT + + K E + + +L +N FD + Sbjct: 566 ITDDDVQDKPPIEVV----LPQFKSFVGDAVLVAHNAAFDMKFISMKEREAG-------- 613 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 +R + + D L+ L GI + H A+ D Sbjct: 614 ------------VRFDNPVLDTLLLSALLDGDEEDHSLDALCDRYGIAITGRHTALGDTL 661 Query: 189 ATIAMAKLVKTR-QPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAW 239 AT + + R + + + ++ A + H S +F A Sbjct: 662 ATAELLVRIIERLEAQGYQTFGEVMKASRMAAELR--------HRSAVFSAQ 705 >UniRef50_B8FZZ1 DnaQ family exonuclease/DinG family helicase n=2 Tax=Desulfitobacterium hafniense RepID=B8FZZ1_DESHD Length = 929 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 43/192 (22%), Positives = 71/192 (36%), Gaps = 32/192 (16%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 + D ET G D +FAA+ + E P + +TGI Sbjct: 5 KIVVIDIETTGFDIYNDEIIEFAALCIEEG--EEAEAFSVLISPRRQV--PERILRLTGI 60 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 +P+E + G +A + +I LF I+G+N V FD + Sbjct: 61 SPEELKQAGSLQA-YRDKILDLFQ--DAIIVGHN-VEFDLGFLEQAL----------TIH 106 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGI-EHSNAHDAMADVY 188 +N+ WD L++ R Y +P ++L LTK+ G+ AH A+ D Sbjct: 107 FENTLWDTLEIARILYP-------------NMPKYKLGDLTKSLGLTPLEKAHRALFDAR 153 Query: 189 ATIAMAKLVKTR 200 A + + + Sbjct: 154 AAWELLQACWEK 165 >UniRef50_A6DVI9 Putative exonuclease n=2 Tax=Roseovarius RepID=A6DVI9_9RHOB Length = 688 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 64/230 (27%), Gaps = 30/230 (13%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPA-LDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLP 59 + N +F+ D ET G P D Q A +R + + GE P Sbjct: 484 LANRPLSDLSFVVFDTETTGLSPRGGDEIVQIAGLRIVNGRILRGESFDMLVNP--GRPI 541 Query: 60 QPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRN 119 P + + I+ + + R H ++ +N FD R Sbjct: 542 PPASTRVHHISDDMVQD-APDIIEAGRRFHDF--CQGAVLVAHN-APFDLAFLR------ 591 Query: 120 FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANG--IEH 177 + DN + D L+ L + G I Sbjct: 592 -LKEKVIGRRFDNPVLCT-------------VLMSAGLFDHSGQHTLDALCERFGITIPP 637 Query: 178 SNAHDAMADVYATIAMA-KLVKTRQPRLFDYLFTHRNKHKLMALIDVPQM 226 H AM D AT + +++ Q + L + M I Q Sbjct: 638 EARHTAMGDTVATAEVFVRMLGLLQAKGVTTLGGAIAEEGRMTKIRKAQN 687 >UniRef50_B0B7H7 DNA polymerase III, epsilon chain n=13 Tax=Chlamydiaceae RepID=B0B7H7_CHLT2 Length = 232 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 45/240 (18%), Positives = 75/240 (31%), Gaps = 41/240 (17%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 +F+D ET GT DR + AA + + A I G Sbjct: 2 PALIFYDTETTGTQIDKDRIVELAAY----NGTTSESFQTL---VNPEIPIPAEATKIHG 54 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 IT E A+ I F ++ +NN FD + R+ Sbjct: 55 ITTAEVADAPRFPEAYQKFI--EFCGTDNILVAHNNNAFDYPLLVRECRRHGLSE----- 107 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 + +D ++ R + LP L++L + G E + AH A+ DV Sbjct: 108 ----PQLRTIDSLKWAKKYRTD----------LPQHSLQYLRQVYGFEENQAHRALDDVI 153 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 R+F L + ++ L++ + FG ++G P Sbjct: 154 TLY-----------RVFSALVGDLSPDQIYDLLNETCHPRIFK--MPFGKYKGKPLSEVP 200 >UniRef50_A5Z7T3 Putative uncharacterized protein n=1 Tax=Eubacterium ventriosum ATCC 27560 RepID=A5Z7T3_9FIRM Length = 237 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 40/230 (17%), Positives = 68/230 (29%), Gaps = 33/230 (14%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 ++ D ET G D+ + A++ + + P + Sbjct: 1 MVKDYVCVDIETSGIRVKWDKIIEIGAVKVR-DGKAVDTFSEL---INPGLKLSPYITEL 56 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 TGIT + + K E I I+G+N + FD + Sbjct: 57 TGITDEMLKDKPFIEEVLPRFIEFA---GDDVIMGHNIM-FDYSFLKQNAINQKL----- 107 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 + D D L + R + GL S LE+L GI N H A D Sbjct: 108 --KFDKMGIDTLKIAR-------------KTLKGLESRGLEYLCNYYGIADENHHRAFND 152 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMF 236 T + ++ + LF + +M+P+ + Sbjct: 153 AEVTSKLYNVLMEKFGTESPGLFEPY-----QLVFKAKKMQPITDRQKKY 197 >UniRef50_A5TTA5 DNA-directed DNA polymerase III alpha subunit n=17 Tax=Fusobacterium RepID=A5TTA5_FUSNP Length = 1454 Score = 124 bits (311), Expect = 8e-27, Method: Composition-based stats. Identities = 42/293 (14%), Positives = 81/293 (27%), Gaps = 56/293 (19%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 + F+ D ET G + + + A++ + ++ IT Sbjct: 424 EEEFVVFDIETTGLNSHTNEIIEIGAVKIKAG-RIVDRYSQL---INPGRPIPYHITEIT 479 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 IT ++ + + + I +L +N FD + + S Sbjct: 480 SITDEQVANEPKIDEV----IGKFIDFVGDAVLVAHNAPFDMGFIKRDVKKYLNIDLQSS 535 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 ++D ++ L P+ L + L L K G+ H A+ D Sbjct: 536 ---------VIDTLQMARDLFPD----------LKKYGLGDLNKTLGLALEKHHRAVDDS 576 Query: 188 YATIAMAKLVKTRQPRLFDYLFT--------HRNKHKLMALIDVPQMKP-----LVHVSG 234 AT M + + + K L ++ + + + VS Sbjct: 577 QATANMFIIFLDKYKEKGLEYIKDINVGFEVNVKKQSLKNIMVLVKTQDGLKNMYKLVSE 636 Query: 235 ----MFGAWRGNTSWVA------------PLAWHPENRNAVIMVDLAGDISPL 271 FG + L H N + + L D+ L Sbjct: 637 SHIKYFGNKKARIPKSVLVENREGLIIGSSLTAHFMNTGELADLYLRHDLEKL 689 >UniRef50_C9PT90 Putative uncharacterized protein n=1 Tax=Prevotella sp. oral taxon 472 str. F0295 RepID=C9PT90_9BACT Length = 900 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 39/223 (17%), Positives = 74/223 (33%), Gaps = 19/223 (8%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 + D ET G + D Q AA++ + V G + K +P Sbjct: 511 SFDTEEIVVFDTETTGLNVFEDDIVQIAAVKMRASCVVEGSAFNVFIKTERP-IPAMLGD 569 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 + I + R A + +L +N FD + R R Y P Sbjct: 570 IPNPIVAELQRNTCLPAAQALQDFMQYV--GDSVLLAHN-ADFDYNILRFNLQR--YCPS 624 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 + +D L ++R GL ++L+ L + +E +N+H A Sbjct: 625 IDLHATHPTYFDSLKIIRLLQP-------------GLKQYKLKALLEVLHLEGTNSHLAD 671 Query: 185 ADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMK 227 DV AT+++ + + + + ++ V + + Sbjct: 672 EDVQATVSLVGYCRQKAAEMIPAQQQFLARQRVQHCAAVFRQR 714 >UniRef50_Q04F80 DNA polymerase III, alpha subunit (Gram-positive type) n=5 Tax=Leuconostocaceae RepID=Q04F80_OENOB Length = 1437 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 33/218 (15%), Positives = 68/218 (31%), Gaps = 26/218 (11%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 + D ET G D+ Q +A++ V+ + F + + +TGIT Sbjct: 410 YTIFDIETTGLSAVNDKIIQLSAVKMK-NGVVLDTFDQF---INPGFPLSEQTINLTGIT 465 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 + + EA + T + G+N ++FD + + Sbjct: 466 DDLVKNS-KPEAEVLKMFQQFYAR--TILAGHNVIKFDYGFVNHALAVHKLPKINTL--- 519 Query: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190 ++D + L P + L+ L+K + + H A+ D AT Sbjct: 520 ------VIDTLNLARWLYPN----------FGRYTLDFLSKKFSVNLEHHHRAIDDSTAT 563 Query: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKP 228 + + + ++ + Q +P Sbjct: 564 GMLLHIFLKEAEENYGVVYDEQLNEHTDDHESWRQTRP 601 >UniRef50_A1K872 DNA polymerase III epsilon chain-like protein n=3 Tax=Betaproteobacteria RepID=A1K872_AZOSB Length = 734 Score = 123 bits (310), Expect = 1e-26, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 58/210 (27%), Gaps = 27/210 (12%) Query: 8 QSTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 + T+ D ET G +P+ D Q A+R + + E + + Sbjct: 541 ELTYTVFDTETTGLNPSQGDEIIQIGAVRVLNGKPLRSEAFEQLI--DPCRPLPEESARV 598 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 GIT + EA H+ T ++ +N FD + Sbjct: 599 HGITADMLAGQPVIEA-VLPSFHAFAA--DTVLVAHNAA-FDMRFLQ----------LKE 644 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 +LD + + P S RLE + + GI H A+ D Sbjct: 645 DLTGLRFDQPVLDTLLLSAVIHPN----------QDSHRLEAIAERLGITVVGRHTALGD 694 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKHK 216 T + + + Sbjct: 695 AMVTAEVFLKLVPLLAEKGIRTLREAREAA 724 >UniRef50_B5ZV55 DNA polymerase III, epsilon subunit n=23 Tax=Alphaproteobacteria RepID=B5ZV55_RHILW Length = 245 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 40/200 (20%), Positives = 62/200 (31%), Gaps = 27/200 (13%) Query: 12 LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITP 71 + D ET G DR + I + F G Y P D + P A+ + GIT Sbjct: 4 IIFDTETTGLDNRADRIIEIGGIELFNHF-PTGNVIHIYINPGDQKV-HPDALAVHGITD 61 Query: 72 QEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHD 131 + + K + A A I + F + +N FD R P Sbjct: 62 EFLKDK-KPFAEVAEEILTFF--GDAKWIAHN-ATFDMGFINAELARIGLPPILPE---- 113 Query: 132 NSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE--HSNAHDAMADVYA 189 D L + R + + P L+ L + GI+ H H A+ D Sbjct: 114 -RVLDTLSMARRKHPMGPN--------------SLDALCRRYGIDNSHRTKHGALLDSEL 158 Query: 190 TIAMAKLVKTRQPRLFDYLF 209 + + + F Sbjct: 159 LAEVYIEMIGGRQAAFGLSM 178 >UniRef50_Q041D1 DNA polymerase III, alpha subunit (Gram-positive type) n=20 Tax=Lactobacillus RepID=Q041D1_LACGA Length = 320 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 47/267 (17%), Positives = 77/267 (28%), Gaps = 41/267 (15%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 + D ET G P DR + ++ V+ P + +P + Sbjct: 30 PENYTLIDVETTGLSPYRDRITEMGGLKVRHG-EVVATFSELVKFPDSNKVPT-FITKLN 87 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 GI KG + I+GYN V FD + + Y + Sbjct: 88 GIDEAAIEEKGLPVQEAIKKYREFIGSDP--IVGYN-VNFDLNFVY-----DLAEKYHLT 139 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 ++ D +DV R + P+ RL I + H + D Sbjct: 140 VLNN----DYVDVYRLARSFYPQE----------RHNRLLDCMHRMNIAENQEHRGLDDC 185 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVA 247 T K V +LF R + + L + +V + F + Sbjct: 186 LDT----KKVFDEFHKLFKQEHMLRAQEAVKTLDLTSEWPDIVKQTQAFHSPF------- 234 Query: 248 PLAWHPENRNAVIMVDLAGDISPLLEL 274 ++ VI DL D L + Sbjct: 235 ------IHKKVVIAGDLDLDEYELTNV 255 >UniRef50_C0WAB0 DNA polymerase III n=1 Tax=Acidaminococcus sp. D21 RepID=C0WAB0_9FIRM Length = 225 Score = 123 bits (309), Expect = 1e-26, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 60/193 (31%), Gaps = 26/193 (13%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 + +++ D ET G A + A+ + + + P P + Sbjct: 53 RPLSYVVIDIETTGLDVARSAIIEIGAVHVRNGA--VSGRFQTFLTPEPYQSLSPFITNL 110 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 TGIT + R+ ++G+N V FD + YR + Sbjct: 111 TGITDSDLVG-APTFREILPRLRDFL--GGYTLVGHN-VNFDINFLYDRIYRETGEHLNN 166 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 + LD + + P GL + LE L K GI N H A+ D Sbjct: 167 PY---------LDTKKLAKTVVP----------GLSHYSLEALCKHFGIA-GNHHRAVDD 206 Query: 187 VYATIAMAKLVKT 199 T + + Sbjct: 207 CELTEKVLDALWR 219 >UniRef50_A1ZKT0 Exonuclease n=1 Tax=Microscilla marina ATCC 23134 RepID=A1ZKT0_9SPHI Length = 245 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 63/191 (32%), Gaps = 27/191 (14%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 + + +F D ET GT DR Q A I+ ++ + + + P Sbjct: 1 MQIKKPIVFFDLETTGTDTLNDRIVQIAIIKLAADGTKVEKERLI----NPTIPIPPEVT 56 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 + G++ + + A + + GYN++ FD + F R Sbjct: 57 KVHGVSDEMVKDAPTFH-QVAKSLFEFIR--GCDLAGYNHLNFDMPLLIEEFARAGV--- 110 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 +DVM+ Y P ++ E NAH+AM Sbjct: 111 ----VFPEPDVQYIDVMKVYYHFHPRTLSAAYQLYCHK-------------ELENAHNAM 153 Query: 185 ADVYATIAMAK 195 AD AT+ + + Sbjct: 154 ADTQATLEIFE 164 >UniRef50_A9BIM3 DNA polymerase III, alpha subunit n=1 Tax=Petrotoga mobilis SJ95 RepID=A9BIM3_PETMO Length = 1388 Score = 123 bits (308), Expect = 2e-26, Method: Composition-based stats. Identities = 36/222 (16%), Positives = 71/222 (31%), Gaps = 30/222 (13%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 ++ F+ D ET G PA++ + A++ + I KP Sbjct: 378 SETEFVVFDLETTGLEPAMNEIIEIGAVKIKN--MKIVSKFHRLVKPRKPV--SNFTSNF 433 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 TGIT Q + E + + ++ +N + FD R R + + + Sbjct: 434 TGITNQMLEVEKPIEEVLPQFLSFI---EGAVLVAHNAI-FDYRFIREWVRRVYNEHFEQ 489 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 ++ +D + +L L S+ L + + + H A D Sbjct: 490 TY---------IDTVALSKSLLT-----------LKSYGLAKVVEELKLGSFEHHRAHED 529 Query: 187 VYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKP 228 T + + + + K L ID +++P Sbjct: 530 ANITALVFLKLIEMAKSQNVEMLSDLEK--LKKFIDFKRIQP 569 >UniRef50_A3X8N6 Exonuclease, DNA polymerase III, epsilon subunit family protein n=11 Tax=Rhodobacteraceae RepID=A3X8N6_9RHOB Length = 484 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 40/222 (18%), Positives = 66/222 (29%), Gaps = 29/222 (13%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 62 + Q F D ET G P D Q A+R + + GE Sbjct: 269 DQPLNQLCFAVFDTETTGLLPHKDDIVQIGAVRVLNGRLIEGEELNTLV--DPGRPIPEA 326 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 + + G++ + + A AA H I+ +N FD R + Sbjct: 327 STRVHGVSTAMVQG-APDIAEAAAEFHLF--ATDAVIVAHN-APFDMAFLRRHAKASGLA 382 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA-- 180 +LD + L L+ L + I A Sbjct: 383 ----------WDHPILDTVLLSAVL----------FGASVPHTLDALCERLDITIPPALR 422 Query: 181 HDAMADVYAT-IAMAKLVKTRQPRLFDYLFTHRNKHKLMALI 221 H A+ D AT A+ +++ Q R F+ L + + + Sbjct: 423 HTALGDAQATACALVQMIPMLQARGFNSLLQVIEQTQRHGRL 464 >UniRef50_A6P0N2 Putative uncharacterized protein n=1 Tax=Bacteroides capillosus ATCC 29799 RepID=A6P0N2_9BACE Length = 1390 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 32/202 (15%), Positives = 52/202 (25%), Gaps = 28/202 (13%) Query: 12 LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITP 71 + D ET G D + A+ + I E + + V +T IT Sbjct: 370 VCFDIETTGLDNRRDVIIEIGAVILRNG--EIAETFDTFV--SPGRPLSREIVELTSITD 425 Query: 72 QEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHD 131 + E I + L +N FD R S Sbjct: 426 KMLEGAPSQE----EAIRAFLEFAGDRPLAAHNAEFDMGFIAEGCRRYGIPFEKTS---- 477 Query: 132 NSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATI 191 +D + L P+ L ++L+ + + + H A AD Sbjct: 478 ------IDTLILAQNLLPD----------LGKYKLDIVAEHLRLPPFKHHRADADAGMVA 521 Query: 192 AMAKLVKTRQPRLFDYLFTHRN 213 M L + N Sbjct: 522 YMLVPFFKMLEDLGIHTLQSIN 543 >UniRef50_Q03S23 Rad3-related DNA helicase n=4 Tax=Lactobacillus RepID=Q03S23_LACBA Length = 948 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 52/258 (20%), Positives = 80/258 (31%), Gaps = 36/258 (13%) Query: 5 GKQQSTFLFHDYETFGTHP-ALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 63 + + + D ET GT DR Q + + F Sbjct: 1 MDKDTVYAVVDIETTGTSVTDGDRIIQIGCVFVQHNQVI----NHFETDVNPLKEIPAAI 56 Query: 64 VLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 +TGIT + R + A ++SL T T + +N V FD R Y Sbjct: 57 SRLTGITNKRVRHAPLFD-DVAGTLYSLLT--NTVFVAHN-VNFDLPFINAELERVGYPA 112 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDA 183 + +D + L P SFRL L++ IEH N H A Sbjct: 113 LPIA---------AVDTVSLSQILLPTA----------TSFRLRDLSRLFNIEHDNPHSA 153 Query: 184 MADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNT 243 +D AT + + R L +ID+ PL + A + N Sbjct: 154 DSDASATAELFIFLFRR--------LRALPMVTLQRMIDLQADLPLQTTTLFRVAQQLNE 205 Query: 244 SWVAPLAWHPENRNAVIM 261 L + +N + + Sbjct: 206 QSPRKLPDYLYIKNGLAL 223 >UniRef50_C8NZK8 DNA polymerase III (Alpha subunit) n=2 Tax=Erysipelotrichaceae RepID=C8NZK8_ERYRH Length = 1433 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 42/223 (18%), Positives = 73/223 (32%), Gaps = 33/223 (14%) Query: 4 DGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 63 + Q +++ D ET G D +F + V+ + + F P +P Sbjct: 378 ESLQTGSYVSFDLETTGLSNYYDHIIEFGGVLI-ENGRVVKKMQTFIKAPVP---VRPFI 433 Query: 64 VLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 +T IT + E I ++ +N +FD + + R +P Sbjct: 434 QELTNITDADLVNAPSIE-EAMDEILEFL--GDHVLVAHN-AQFDIDFIQETLRRIGKEP 489 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTK--ANGIEHSNAH 181 N+ D LD+ RA D S+RL + + G + AH Sbjct: 490 IQ------NAVIDTLDLSRA-------------LFDNRRSYRLGSIARFMRIGYDEGVAH 530 Query: 182 DAMADVYAT----IAMAKLVKTRQPRLFDYLFTHRNKHKLMAL 220 A D + M +L + + D L + N+ L Sbjct: 531 RADYDAEVLSLVFLEMLRLEQLSTMQTIDDLQSLNNESSFKKL 573 >UniRef50_B3T077 Putative exonuclease n=1 Tax=uncultured marine microorganism HF4000_001N02 RepID=B3T077_9ZZZZ Length = 299 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 61/206 (29%), Gaps = 28/206 (13%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 M+ L D ET G DR Q+A I +D + G Sbjct: 29 MVGGMLSGYRVLGFDLETTGLDARKDRIVQYALIGSDVD----GSHINLASLVDPRRGIP 84 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 A I GI+ ++ R G E I L I+G+N FD R Sbjct: 85 TAASRIHGISEEDVRGVGSFE-THVGAISELIE--DAVIVGHNISNFDWRFLELECMRAG 141 Query: 121 YD-PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSN 179 + P + ++D LR G L L I Sbjct: 142 VETPIPRA---------IVDTYSLARKLRIPGR-----------RTLGVLCARYDISIGR 181 Query: 180 AHDAMADVYATIAMAKLVKTRQPRLF 205 AH A AD A++ + + P F Sbjct: 182 AHSADADAGASLLLLWSMMHSHPAEF 207 >UniRef50_B8DC27 DnaQ family exonuclease/DinG family helicase, putative n=19 Tax=Listeria RepID=B8DC27_LISMH Length = 928 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 39/186 (20%), Positives = 64/186 (34%), Gaps = 28/186 (15%) Query: 7 QQSTFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 +Q ++ D ET G + DR QFAA +S + E + + Sbjct: 2 KQKRYIVVDLETTGNQASREDRIIQFAACFVESGKRL--ETYTTF--LNPEKPIPAFIQE 57 Query: 66 ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA 125 +TGI+P++ + E A I L T + +N V FD R Sbjct: 58 LTGISPKDVKNAPLFE-DVAPIIAGLLE--DTIFVAHN-VSFDWTFLEREMTRAGI---- 109 Query: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMA 185 + LD + + P G+ S++L+ L+ + H H A + Sbjct: 110 -----SLGKMKKLDTVELARIMYP----------GIDSYKLQDLSDEFNLGHDKPHRADS 154 Query: 186 DVYATI 191 D T Sbjct: 155 DAEVTA 160 >UniRef50_B4S124 DNA polymerase III, epsilon subunit n=3 Tax=Proteobacteria RepID=B4S124_ALTMD Length = 715 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 36/197 (18%), Positives = 61/197 (30%), Gaps = 28/197 (14%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 ++ D ET G + + +R + ++ + + +TG Sbjct: 541 QPYVVVDIETTGGNNSYNRITEIGMVKL-VGGKEVDRFQTL---LNPQRRIPSSITRLTG 596 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 I+ A A I S + +N V FD + F R Sbjct: 597 ISDDMVADAPLF-AEVADHIASF--TEDAVFVAHN-VNFDYGFIKQEFAR---------- 642 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 + R + +R P GL S+ L +LTK I+ H A++D Sbjct: 643 LEQSFRRPKMCTVREMRRTHP----------GLSSYSLANLTKHFHIDMEQHHRALSDAK 692 Query: 189 ATIAMAKLVKTRQPRLF 205 A + KL + F Sbjct: 693 AAAELLKLAFEKDDEGF 709 >UniRef50_C9RRP7 DNA polymerase III, epsilon subunit n=1 Tax=Fibrobacter succinogenes subsp. succinogenes S85 RepID=C9RRP7_FIBSS Length = 905 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 43/221 (19%), Positives = 75/221 (33%), Gaps = 30/221 (13%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 + F+ D ET G D + A +R ++ E F KP+ +P Sbjct: 1 MVKIPAFVALDLETTGLDFEKDEIIEVALVRFENG--EPKENLDFLVKPS-AVELRPFIE 57 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 +TGI+ + + + FA + + + +N FD + + F + Sbjct: 58 TLTGISKADLE----SASDFATIAGQICSFVGDLPIVAHNAVFDSKFLKQTFTKVGISYD 113 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 + + WD L + R + P RL+ L + IE S AH A+ Sbjct: 114 SHVF------WDSLTLSRIAFQDVPN-------------HRLDTLVQELNIERSRAHRAL 154 Query: 185 ADVYAT----IAMAKLVKTRQPRLFDYLFTHRNKHKLMALI 221 D A + + + T P ++D L L Sbjct: 155 PDADACGRLFVKALEKISTMDPWIYDALSQVAKGSGYETLF 195 >UniRef50_Q10384 Uncharacterized protein Rv2191/MT2247 n=25 Tax=Actinomycetales RepID=Y2191_MYCTU Length = 645 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 45/261 (17%), Positives = 81/261 (31%), Gaps = 46/261 (17%) Query: 5 GKQQSTFLFHDYETFGTHPAL------DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYL 58 +++TF+ D ET G D + A++ V+GE + Sbjct: 37 SLRETTFVVVDLETTGGRTTGNDATPPDAITEIGAVKV-CGGAVLGEFATL---VNPQHS 92 Query: 59 PQPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYR 118 P V +TGIT +A + F +L +N FD R R Sbjct: 93 IPPQIVRLTGITTAMVGNAPTIDAV----LPMFFEFAGDSVLVAHNAGFDIGFLRAAARR 148 Query: 119 NFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHS 178 +L MR + + D PS RL L + + + Sbjct: 149 CDITWPQPQ---------VLCTMRLARRV--------LSRDEAPSVRLAALARLFAVASN 191 Query: 179 NAHDAMADVYATIAMAKLVKTRQPRLFDYLF--------THRNKHKLMALI-DVPQMKPL 229 H A+ D AT+ + + R + + + ++ + +P Sbjct: 192 PTHRALDDARATVDVLHALIERVGNQGVHTYAELRSYLPNVTQAQRCKRVLAETLPHRPG 251 Query: 230 VHVSGMFGAWRGNTSWVAPLA 250 V++ +RG + V + Sbjct: 252 VYL------FRGPSGEVLYVG 266 >UniRef50_C5CGL7 DNA polymerase III, alpha subunit n=2 Tax=Thermotogaceae RepID=C5CGL7_KOSOT Length = 1430 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 39/231 (16%), Positives = 77/231 (33%), Gaps = 31/231 (13%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 62 N S ++ D ET G P+ D + A++ VIGE F + Sbjct: 411 NLELMNSIYVVFDLETTGLDPSADEIIEIGAVKLKGT-EVIGEFSSF---VKPERNLSEK 466 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 ITGI+ +E + + + + ++ +N FD RN + Sbjct: 467 VTRITGISDRELED-APSLSEVLPKFLEF--CKDSVLVAHN-ATFDYRFVRNAVKQL--- 519 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHD 182 Y W+ + + ++ S+ L+++ K + H Sbjct: 520 -YNEDWKLP----------------YIDTLALSKSLLKSKSYSLDNVVKRLKLGDFEHHR 562 Query: 183 AMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVS 233 A D T + K + + + + L I++ ++P +HV+ Sbjct: 563 ASEDARITAEVFKKLLSMAKK--RGIKKIAELENLRKHINISSLRP-LHVT 610 >UniRef50_C7MCE6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Brachybacterium faecium DSM 4810 RepID=C7MCE6_BRAFD Length = 551 Score = 122 bits (307), Expect = 2e-26, Method: Composition-based stats. Identities = 38/193 (19%), Positives = 63/193 (32%), Gaps = 25/193 (12%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 ++T + D ET GT PA D + A++ V+GE F + +T Sbjct: 18 EATLVVVDLETTGTDPAADAITEIGAVKVR-GGEVLGEFRTF---VDPERPIPAYIASLT 73 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 GIT A+ + ++ +N RFD A Sbjct: 74 GITDAAV-AEAPSIRTVLPMFLDF--AGDAALVAHN-ARFDIGFLSAQAA-------ACE 122 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 R +LD + + D + RL L + G + H A++D Sbjct: 123 ITWPRPR--VLDTLALARTVF--------RRDEVRDHRLSTLARHVGAGITPDHRALSDA 172 Query: 188 YATIAMAKLVKTR 200 AT+ + + R Sbjct: 173 RATVDVLHAIIER 185 >UniRef50_A9HX18 Putative exonuclease n=1 Tax=Bordetella petrii DSM 12804 RepID=A9HX18_BORPD Length = 177 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 65/193 (33%), Gaps = 27/193 (13%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 F D ET G A +FAA+ + + E +P P +TGI Sbjct: 7 PFAVADLETTGLSTASCEILEFAAVHVGPDGAIEREFSQVV--RTRGTVP-PFITRLTGI 63 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 T E G A + + + ++N FD + Sbjct: 64 TQAEVDGHGIPVAEAFSAFLAFLA---DAPVFFHNASFDCRFLQAAAEHTGLP------- 113 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 N+ L + R WPE LPS +L+ L + G H A+ADV + Sbjct: 114 FANATHCTLQLARQA---------WPE----LPSHKLQVLARHVG-AADPTHRALADVRS 159 Query: 190 TIAMAKLVKTRQP 202 T+A+A + + Sbjct: 160 TVAVALAARRKLA 172 >UniRef50_C7H6D8 DNA polymerase III, alpha subunit n=4 Tax=Clostridiales RepID=C7H6D8_9FIRM Length = 244 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 44/206 (21%), Positives = 80/206 (38%), Gaps = 19/206 (9%) Query: 6 KQQSTFLFHDYETFGTHPALDRPAQFAAIR---TDSEFNVIGEPEVFYCKPADDYLPQPG 62 + +F D ET G + + AAIR T+ + + + K + Sbjct: 9 TKYKAVVFFDTETTGLEAESCQIIELAAIRVEKTERGTLRMADSADVFVKLPEGERIPQK 68 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 V +TGIT ++ +G EA AAR L + + ++ +N +FD T + R+ Sbjct: 69 IVELTGITDEQLENEGITEAEAAARFTELISGGRVLLVAHN-AQFDLLFTAEMLRRHG-- 125 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHD 182 D L V + A P + + + +++LE + N+H Sbjct: 126 NGGPEALKAADYLDSLTVYKDRRA-YPHKL-----ANAILTYKLEG-------KVQNSHR 172 Query: 183 AMADVYATIAMAKLVKTRQPRLFDYL 208 A+ DV A + K + + L +Y+ Sbjct: 173 AIDDVAALFEVCKAMDAERSDLLNYV 198 >UniRef50_Q03C57 3'-5' exonuclease and CRISPR-associated protein cas2 n=3 Tax=Lactobacillus RepID=Q03C57_LACC3 Length = 301 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 36/191 (18%), Positives = 65/191 (34%), Gaps = 26/191 (13%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 F+ D ET G D A++ E P LP A +TG+ Sbjct: 129 PFVALDIETTGLDAERDAIIAIGAVK--GPSVNETEKFTTLVNPRRP-LPSTVA-KLTGL 184 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 + +E A G + + + ++GYN +RFD + Sbjct: 185 SAEELVANGISLSEAVQALRDF--TGSLPLVGYN-LRFDMGFLSAAGRETGLTSF----- 236 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 N +DLL +++ ++L + I++ H A++D A Sbjct: 237 -GNQTFDLLPLVKKSSRFLDN-------------YKLSTVLAHYQIDNEQPHHALSDATA 282 Query: 190 TIAMAKLVKTR 200 T+A+A + + Sbjct: 283 TMALADKLIKK 293 >UniRef50_A4BWD8 DNA polymerase III, epsilon subunit n=3 Tax=Flavobacteriales RepID=A4BWD8_9FLAO Length = 462 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 58/360 (16%), Positives = 108/360 (30%), Gaps = 53/360 (14%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 + D ET G P + + +A+ D + ++ E + +TGIT Sbjct: 3 YAVVDIETTGNGPKGQKITEISALIFDGK-KIVDEFTSL---VNPEQNIPAFITSLTGIT 58 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 R A ++ + T + +N V FD + + F +D Sbjct: 59 NAMVRNAPRF-FEIAKKVAEI--TENTIFVAHN-VNFDYNIIQAEFKSLGFDFKRKK--- 111 Query: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190 L +R + P GLPS+ L ++ I + H A D AT Sbjct: 112 -------LCTIRLTRKIIP----------GLPSYSLGNICTGENIPINGRHRAKGDAEAT 154 Query: 191 IAMAKLVKTRQPRLFDYLFTHRNKHK--LMALIDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 + + + R F + + L LID + L G++ ++ + Sbjct: 155 AELLRRLIERDENFTINSFLNPKSRQATLPPLIDKIVIDNLPETFGVYY-FKNLAKEIIY 213 Query: 249 LAWHPENRNAVI--MVDLAGDISPLLELDSDTLRERL-------------------YTAK 287 + + VI D + +D + + Sbjct: 214 VGKANNIKQRVISHFYDKKKKEQTMCLETADVSFTKTGSELLALLLESSEIKHIYPKFNR 273 Query: 288 TDLGDNAAVPVKLVHINKCPVLAQANTLRPEDADRLG-INRQHCLDNLKILRENPQVREK 346 AV + K + N L+ L + C ++L+ L E ++ K Sbjct: 274 AQRKSAEAVGLFSYEDQKGILHLAYNRLKLAPNALLKYYSISECRNHLETLCETFELCPK 333 >UniRef50_A9DMS8 DNA polymerase III, epsilon subunit n=1 Tax=Kordia algicida OT-1 RepID=A9DMS8_9FLAO Length = 457 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 53/250 (21%), Positives = 83/250 (33%), Gaps = 42/250 (16%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 + T+ D ET G ++ + + + D E ++ E + L Sbjct: 1 MAKNPTYTIIDVETTGRS---NKITEISIFKFDGE-TIVDEFTSL---VNPNVLIPTHIT 53 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 +TGI A A A + S+ + + +N V FD V RN F D Sbjct: 54 ALTGIDNAMV-ADAPTFAEIAKEVLSI--TKDSIFVAHN-VNFDYNVIRNEFKAIDLD-- 107 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 R L +R AL P G S+ L L K+ I S+ H A Sbjct: 108 --------FRRKKLCTVRLSRALIP----------GFKSYSLGKLCKSLNIHISDRHRAR 149 Query: 185 ADVYATIAMAKLV--KTRQPRLFDYLFTHRNKHKL------MALIDVPQMKPLVHVSGMF 236 D AT+ + +L+ K F +K + D KP ++ F Sbjct: 150 GDAAATVILFQLLLTKDAAAETFQKFLKRESKEATLPPHLPSKIFDDLPAKPGIY---YF 206 Query: 237 GAWRGNTSWV 246 +G +V Sbjct: 207 KDKKGKIIYV 216 >UniRef50_B3R0M5 DNA polymerase III alpha subunit n=1 Tax=Candidatus Phytoplasma mali AT RepID=B3R0M5_PHYMT Length = 1449 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 44/232 (18%), Positives = 82/232 (35%), Gaps = 34/232 (14%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 +T++ D+ET G D+ + AAI+ + +I E + P +T Sbjct: 407 ATYVIFDFETTGLSKINDQIIEIAAIKIQNN-QIIDEFQTL---INPQQELTPFIENLTN 462 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 I+ Q+ + + A + + ++ +N + FD N ++ + Sbjct: 463 ISNQDLKNQPLI-ATILPKFLKF--CENSILIAHN-ISFDMGFLVNQTKKHL------NL 512 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 + + D L++ R C D L F L+ L K I N H AM+DV Sbjct: 513 KLNLPFIDTLNLARYC------------LDSNLRYFNLKSLAKYFKISFENHHRAMSDVL 560 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPL---VHVSGMFG 237 T + + + + +L + V +KP + V G Sbjct: 561 ITKTIFQQLLNYLLTKNIQFY-----QQLKLTLPVKFIKPFRITLLVKNQIG 607 >UniRef50_B8FYI4 DNA polymerase III, alpha subunit n=10 Tax=Clostridiales RepID=B8FYI4_DESHD Length = 1447 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 35/228 (15%), Positives = 71/228 (31%), Gaps = 28/228 (12%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 +T+ D ET G A ++ + ++ + + F C + Sbjct: 415 PKGQSIDTTYCVLDLETTGFSAATEKITEIGIMKIQGGKII----DQFGCFVNPEKPIPA 470 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 V +T IT R + F ++ + + ++ +N FD ++ Y Sbjct: 471 RVVEVTNITDDMVRDAETIDQVFPKILNFI---EGSVLVAHN-ADFDMGFLKHNAKVLGY 526 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 D + LD + L P+ +++L + K GI+ AH Sbjct: 527 D----------FDYTYLDTLSLAKELFPD----------YKTYKLGRIAKNLGIKVEVAH 566 Query: 182 DAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPL 229 A+ DV T+ + ++ + + K L Sbjct: 567 RALDDVGTTVKVFNIMVDMLKERGVETLEDIDLKAADEAARKDEYKKL 614 >UniRef50_C7H779 DNA polymerase III, alpha subunit n=5 Tax=Clostridiales RepID=C7H779_9FIRM Length = 1417 Score = 122 bits (306), Expect = 3e-26, Method: Composition-based stats. Identities = 33/188 (17%), Positives = 55/188 (29%), Gaps = 27/188 (14%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 62 D F D ET G P ++ + A+ + + E + KP P Sbjct: 389 KDQPLDGEFCVFDTETTGLDPGVEYLTEIGAVIVRNG--EVVEEFDTFVKP--GKPITPK 444 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 +TGIT + A E ++ +N FD + R+ Sbjct: 445 ITELTGITNEMV-ADAPGEKEALEAFLRF--ADGRILVAHNAHAFDIRFLKAAAKRSGIS 501 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHD 182 +D + A+ P GL +++ + K + AH Sbjct: 502 FEPT----------YIDTLTMAQAMYP----------GLHNYKQGTINKHLELPSYEAHR 541 Query: 183 AMADVYAT 190 A D A Sbjct: 542 ACEDSAAL 549 >UniRef50_C0W351 DNA polymerase III epsilon subunit n=1 Tax=Actinomyces urogenitalis DSM 15434 RepID=C0W351_9ACTO Length = 547 Score = 122 bits (305), Expect = 3e-26, Method: Composition-based stats. Identities = 39/200 (19%), Positives = 59/200 (29%), Gaps = 25/200 (12%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 M Q++TF+ D ET G P + A+R V E Sbjct: 22 MGTPLQETTFVVVDLETTGAGPGSHTITEIGAVRVR-GGQVEDELSTL---VNPGRAIPA 77 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVP--KTCILGYNNVRFDDEVTRNIFYRN 119 ++TGIT R + +T ++ +N RFD R Sbjct: 78 QITVLTGITNAMVAG-APPVPEALERFLQWARLWEEETVLVAHN-ARFDVGHLRGAARAL 135 Query: 120 FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSN 179 D H+ D L + R + +P+ RL L G Sbjct: 136 ELD------WHEPRVLDTLALARRAWT-----------RSEVPNHRLATLASFVGSPTRP 178 Query: 180 AHDAMADVYATIAMAKLVKT 199 H A+ D AT+ + Sbjct: 179 THRALDDARATVDVLHAALE 198 >UniRef50_D2MQ64 DNA polymerase III, alpha subunit, Gram-positive type n=1 Tax=Bulleidia extructa W1219 RepID=D2MQ64_9FIRM Length = 1442 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 37/206 (17%), Positives = 64/206 (31%), Gaps = 29/206 (14%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 62 + ++T++ D ET G D +F A++ + + + + + KP Sbjct: 385 DQKIDEATYVVFDLETTGLSAKYDYMIEFGAVKIKNGLRL--DSKQLFIKPP--ISIPAF 440 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 T I+ + R +F+ + L +L +N FD R Sbjct: 441 IEKKTNISNEMVRNA----KSFSEVVDELLAYIGDAVLVAHNASFDFPFLNEELRRLSRK 496 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKAN--GIEHSNA 180 P N D LD+ RA F LE+++ S+A Sbjct: 497 PLT------NPVIDTLDMARAI-------------LSDRSRFALEYVSNHYKLNYSRSDA 537 Query: 181 HDAMADVYATIAMAKLVKTRQPRLFD 206 H A D + + R F Sbjct: 538 HRADYDANILADAFEHLLVDAKRQFQ 563 >UniRef50_C0A8I6 DNA-directed DNA polymerase n=1 Tax=Opitutaceae bacterium TAV2 RepID=C0A8I6_9BACT Length = 197 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 58/190 (30%), Gaps = 18/190 (9%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 + D ET G P + Q AA+R + + E Y P +TGI Sbjct: 2 NLVIFDLETTGFSPRWNDIIQIAAVRL-VDGRISDETFSTYVSPRRPVPDH--ITELTGI 58 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 T + E A A + V T ++ +N RFD + Sbjct: 59 TDADVADAPETSDALRAFARFVGDVGPTTLVAHNGHRFDMRFIAESCTLHGLP------- 111 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 + +R ++ WP +E L GI HDA ADV+ Sbjct: 112 --------MRPIRFIDSIWLSKKLWPAESLHNLDVIVERLGIETGITGHRRHDARADVHL 163 Query: 190 TIAMAKLVKT 199 + + Sbjct: 164 LANAVRRMIQ 173 >UniRef50_A7BDG4 Putative uncharacterized protein n=1 Tax=Actinomyces odontolyticus ATCC 17982 RepID=A7BDG4_9ACTO Length = 550 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 38/219 (17%), Positives = 61/219 (27%), Gaps = 33/219 (15%) Query: 12 LFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITP 71 + D ET G D + A+R + V+ E KP+ P +TGITP Sbjct: 30 VVVDLETTGLGAGAD-ITEIGAVRIR-DGAVVDEFSSL-VKPSRP--IPPFITSLTGITP 84 Query: 72 QEARAKGENEAAFAARIHSL--FTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 A+ + +L +N FD A + Sbjct: 85 AMVADAAPI-ASVLEHFLEWSGLGASDSPVLVAHNASFDVGFL---------RRAARACA 134 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 R ++D + P + + +L + G H A+ D A Sbjct: 135 RPWPRVRIVDTLALARLALPRPLV--------RNHKLGTVASYFGTATVPEHRALGDARA 186 Query: 190 TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKP 228 T + F L + LI + P Sbjct: 187 TAEILL--------GFIDLLAAAGATDVEDLIVLTDQAP 217 >UniRef50_C4RQP7 DNA polymerase III, epsilon subunit n=1 Tax=Micromonospora sp. ATCC 39149 RepID=C4RQP7_9ACTO Length = 286 Score = 122 bits (305), Expect = 4e-26, Method: Composition-based stats. Identities = 37/185 (20%), Positives = 56/185 (30%), Gaps = 30/185 (16%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 F+ D ET G DR + A +R V+ E P P + I Sbjct: 36 PFVVVDVETTGLSSTSDRIVEIALVRI-EGGRVVDEWATL---VDPGRDPDP--TFVHHI 89 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 T + FA + + ++ +N RF++ F R Sbjct: 90 TAEMLSGAP----TFADVAGEILSRLDGAVVVAHNARFEEGFIAQEFARVGIS------T 139 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 L + R A P+F+L GIE +AH A+ D A Sbjct: 140 APLPAVCTLRLARQVLA--------------APNFQLVSCCTVYGIELHDAHTALGDTRA 185 Query: 190 TIAMA 194 T + Sbjct: 186 TAQLL 190 >UniRef50_B0P1Y1 Putative uncharacterized protein n=2 Tax=Clostridiales RepID=B0P1Y1_9CLOT Length = 235 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 40/194 (20%), Positives = 67/194 (34%), Gaps = 28/194 (14%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 ++ D ET G P D+ + A++ + + G+ + C + + +TG Sbjct: 2 KDYVAFDLETTGLSPDSDQIIEIGAVKIR-DGKISGK---YNCIIHPEIEVSDFIINLTG 57 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 I+ R G ILG+N V FD + + +F P+ + Sbjct: 58 ISRDMLRK-GIPLKEGVEEFLEF--SGDLPILGHN-VMFDYKFMKMAAA-SFKYPFEKTG 112 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 D L V R + GL + +LE L + AH A D Sbjct: 113 ------VDTLKVAR-------------KLLTGLENKKLETLCAHYHYVNQAAHRAYDDAL 153 Query: 189 ATIAMAKLVKTRQP 202 AT + + +K P Sbjct: 154 ATAVVFEQMKKEFP 167 >UniRef50_A9KMW9 DNA polymerase III, alpha subunit n=28 Tax=Bacteria RepID=A9KMW9_CLOPH Length = 1527 Score = 121 bits (304), Expect = 5e-26, Method: Composition-based stats. Identities = 35/224 (15%), Positives = 64/224 (28%), Gaps = 29/224 (12%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 + T + D ET G D+ + A++ ++ F + +T Sbjct: 494 EDTCVVFDIETTGFSSVKDKIIEIGAVKIQHG-TIVDRFSTF---INPEVPIPYHIQKLT 549 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 IT + E + + + C L +N FD Sbjct: 550 SITDEMVIGSRTIE----EILPEFLSFCEGCYLVAHNASFDIGFITK----------KAE 595 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 + + +D + L + L +F+L+ + KA I N H A+ D Sbjct: 596 FLNIPLTVTSVDTVGLARVLL----------NHLNNFKLDTVAKALSISLENHHRAVDDA 645 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVH 231 T + N+ + DV + P H Sbjct: 646 GCTAEIYLKFLEMLRERGIETLAQINRAE-EVTPDVIKKMPTYH 688 >UniRef50_C4K987 DNA polymerase III, epsilon subunit n=1 Tax=Thauera sp. MZ1T RepID=C4K987_THASP Length = 482 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 42/193 (21%), Positives = 65/193 (33%), Gaps = 28/193 (14%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 S F D E+ G HP DR + A +R + V+ E A P Sbjct: 1 MSLPSRLAFIDVESTGAHPVRDRITEIAILRV-EDGEVVARWESL---VAPGQPIPPLIE 56 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 +TGI+ E A + +L + + + RFD RN F R + Sbjct: 57 EVTGISDAMVAEAPAFE-VLADTVAALLE--GCVFVAH-SARFDYGFIRNAFTRIGREFE 112 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 A +L ++ AL PE L+ L + +G+ + H AM Sbjct: 113 A----------PVLCTVKLSRALYPE----------HHRHGLDALIERHGLVCAARHRAM 152 Query: 185 ADVYATIAMAKLV 197 DV + + Sbjct: 153 GDVEVLWQFVRGL 165 >UniRef50_Q3B5G9 Exonuclease n=3 Tax=Chlorobium/Pelodictyon group RepID=Q3B5G9_PELLD Length = 197 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 43/200 (21%), Positives = 72/200 (36%), Gaps = 23/200 (11%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 L+ D ET G P QFA + V+ E +P + + + A+ ++G Sbjct: 2 KKVLWFDLETTGIDPDRHGIIQFAGLAEIEG--VVAESFEIKMQPHEGAMIEDEALAVSG 59 Query: 69 ITPQEARAKGENEAAFAARIHSLFTV--------PKTCILGYNNVRFDDEVTRNIFYRNF 120 + ++ + A I K GYN VRFD + +F R Sbjct: 60 FSREQIASF-TPHAEAYKAIDGFLARHVSRFERNDKFYPAGYN-VRFDLDFLSRMFRR-- 115 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 Y W LD + LP+ +L+ + + G+ NA Sbjct: 116 ---YDQYGLGSFINWRSLDPQPILNIME------YMGRLSLPNHKLQTVCEHLGVRLENA 166 Query: 181 HDAMADVYATIAMAKLVKTR 200 HDA++D+ AT + +L+ Sbjct: 167 HDALSDIKATRELMELLMEH 186 >UniRef50_Q1LGD6 DNA polymerase III, epsilon subunit n=5 Tax=cellular organisms RepID=Q1LGD6_RALME Length = 530 Score = 120 bits (302), Expect = 8e-26, Method: Composition-based stats. Identities = 37/191 (19%), Positives = 57/191 (29%), Gaps = 29/191 (15%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 +F D ET G DR + + + I E + P +TG Sbjct: 33 RPIVFVDLETTGADAQRDRITEIGVVEVGPDG--IQEWDTL---VDPLTSIPPFVQGLTG 87 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 IT + R + A A + + +N RFD +N F R Sbjct: 88 ITDEMVRGQ-PTFALIAEALAEKLQ--GRLFVAHN-ARFDYGFLKNEFRRAGVT------ 137 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 R D+L +R +L P L+ L G+ H A+AD Sbjct: 138 ----FRADVLCTLRLSRSLFPSVER----------HGLDALIARFGLTPKGRHRALADAE 183 Query: 189 ATIAMAKLVKT 199 + + Sbjct: 184 LLWQFWQKIHE 194 >UniRef50_C2CW51 DNA polymerase III n=2 Tax=Bacteria RepID=C2CW51_GARVA Length = 307 Score = 120 bits (302), Expect = 9e-26, Method: Composition-based stats. Identities = 51/235 (21%), Positives = 77/235 (32%), Gaps = 37/235 (15%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 + D ET G D + +R + N I + KP+ + +TG Sbjct: 20 DDYCVLDTETTGLSAYYDEIIEIGILRVRN--NEIVDRYDQLIKPSIEV--DGFITALTG 75 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 IT + + + + ILG+N FD F + Y Sbjct: 76 ITNDMLEDMPSISSVKNDVLSFI---SEDIILGHNT-SFDMRFLNEGFKEQLSNQY---- 127 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 +D M+ L PE L RL LT G+ H+N H A+AD Sbjct: 128 ---------MDTMQFARKLYPE----------LKHHRLSDLTDYLGL-HNNEHRALADCI 167 Query: 189 ATIAMAKLVKTRQPRLFDYLFTH--RNKHKLMALIDVPQMKP---LVHVSGMFGA 238 AT + VK+R + + ID+ +KP +V G F Sbjct: 168 ATKELYDAVKSRMVEKNLAIEDLWITGESHGGKGIDIKAIKPDEVVVDKDGFFYN 222 >UniRef50_A9NEU3 DNA polymerase III alpha subunit n=1 Tax=Acholeplasma laidlawii PG-8A RepID=A9NEU3_ACHLI Length = 1504 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 62/210 (29%), Gaps = 21/210 (10%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 +++ + D ET G D+ + AA + F I E P + I Sbjct: 408 KEAVYTVFDIETTGFSFTRDKIIEIAAYKVRGGF--IAERFEVLINPEEQ--LSETTKRI 463 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 T IT + + E T ++ +N FD Sbjct: 464 TNITDEMVENEKTIE-EVLPTFLEFI--KGTVLVAHN-ASFDIGFIYEKSRLLGLQH--- 516 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPEND-------DGLPSFRLEHLTKANGIEHSN 179 + D L++ R Y + N L F L+ LTK + Sbjct: 517 ---EPFAVIDTLNIARYFYNNTNKEKNHARFYVNDAGNIPDLKRFNLKALTKFFKVNLEA 573 Query: 180 AHDAMADVYATIAMAKLVKTRQPRLFDYLF 209 H A+ D YAT + + + Y + Sbjct: 574 HHRAIYDAYATAEVFLNMLQDFYKEEIYSY 603 >UniRef50_Q73L66 DNA polymerase III domain protein n=2 Tax=Treponema RepID=Q73L66_TREDE Length = 217 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 36/204 (17%), Positives = 61/204 (29%), Gaps = 27/204 (13%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F D ET GT +R + ++ D + + + P A + IT Sbjct: 16 FTAFDTETTGTEAKAERVVEIGCVKFDIRGVI----ARYNVLIDPEKPMPPEAGKVNQIT 71 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 + + + A T ++ +N FD R Sbjct: 72 DEMLAGQPKF-AEVLPDFLDFIR--NTVLVAHN-ASFDINFINCELERCGKTKLT----- 122 Query: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190 N +D L R E GL S+ L++L G++ NAH A D Sbjct: 123 -NKVFDTLTFAR-------------ETLPGLQSYALQNLATQFGVQAVNAHRAEDDARVC 168 Query: 191 IAMAKLVKTRQPRLFDYLFTHRNK 214 + K+ + + + K Sbjct: 169 MEFFKIAVSHFFEKNKDMLDYYKK 192 >UniRef50_A4U2R7 DNA polymerase III, epsilon subunit n=1 Tax=Magnetospirillum gryphiswaldense RepID=A4U2R7_9PROT Length = 459 Score = 120 bits (301), Expect = 1e-25, Method: Composition-based stats. Identities = 37/208 (17%), Positives = 59/208 (28%), Gaps = 26/208 (12%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 Q + D ET G A D A+R I + A I Sbjct: 253 SQLPVVVLDTETTGLDAARDAIVSVGAVRCHGS--RIYRAAMLDLLVNPGRRIPARATAI 310 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 GI K AA + + + ++ + + FD + R+ R D Sbjct: 311 HGIDESMVAGKP----DLAASLPEIAAIMDKAVVVGHQIGFDLALLRHGTERLGLD---- 362 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 W LD++ AL P+ ++ G+ S H A+ D Sbjct: 363 -WTPPPR----LDILLLSAALAPDE----------SGHEIDDQAARMGVNISGRHTALGD 407 Query: 187 VYATIA-MAKLVKTRQPRLFDYLFTHRN 213 T +L+ + L R Sbjct: 408 ALVTAELWVRLIPQLERAGVLTLGQARA 435 >UniRef50_Q1DB51 Exonuclease n=3 Tax=Cystobacterineae RepID=Q1DB51_MYXXD Length = 219 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 41/199 (20%), Positives = 63/199 (31%), Gaps = 21/199 (10%) Query: 6 KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 T F D ET G + + A +R D+ + KP P A+ Sbjct: 26 PHLRTLCFVDLETTGLDASRHEVLEVAVLRVDARSLKVLAEYEARVKPTRLADAHPEALA 85 Query: 66 ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA 125 + G + +E A + L T + G+N FD + R+ Sbjct: 86 VCGYSDEE-WRDALPLQEVLATVTPLLA--GTLVAGHNT-SFDWGFLVESYRRSEL---- 137 Query: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLP-SFRLEHLTKANGIEHSNAHDAM 184 L + + L + WP G S L L K G+ H AM Sbjct: 138 -----------ALPSVD-YHRLDTASLAWPLLATGEVESLSLNALAKRFGLHRPTPHRAM 185 Query: 185 ADVYATIAMAKLVKTRQPR 203 AD + +A+ + R R Sbjct: 186 ADARCALEVARCLAVRMAR 204 >UniRef50_A9AEP6 DNA polymerase III, epsilon subunit n=55 Tax=Burkholderia RepID=A9AEP6_BURM1 Length = 398 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 57/201 (28%), Gaps = 29/201 (14%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 D + +F D ET G PA R + + P P Sbjct: 29 PPDPASEQPLVFVDLETTGGTPAEHRITEIGVVEIGPLG---VSTWTTLVNP--GQPIPP 83 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 +TGI+ R + A A + + +N FD R F R + Sbjct: 84 FIQQLTGISDAMVRD-APSFAELAPALFERL--DGKLFVAHN-ASFDRGFLRAEFERAGF 139 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 D+L +R AL P L+ L +G+ + H Sbjct: 140 AFNP----------DVLCTVRLSRALFPRE----------SRHGLDALIARHGLVPAARH 179 Query: 182 DAMADVYATIAMAKLVKTRQP 202 A+AD + + P Sbjct: 180 RALADADLLWQFWRHLHGIVP 200 >UniRef50_A9F4T5 DNA polymerase III, epsilon subunit n=1 Tax=Sorangium cellulosum 'So ce 56' RepID=A9F4T5_SORC5 Length = 258 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 40/205 (19%), Positives = 53/205 (25%), Gaps = 21/205 (10%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 F D ET G PA DR + I ++ + I Sbjct: 42 DQPIAFVDVETTGRDPAGDRIIELG-IVIGRSGEILTRYNWL---IHPGRPIPAESTAIH 97 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 GI + K + A A I F YN FD R P Sbjct: 98 GIKDADVEGK-PSFAEVAEEILGCF--KGAIPAAYN-ATFDRSFLLAELERVGMRPREPP 153 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 D +D + L S L + GI AH A D Sbjct: 154 PAM-RREVDWVDPLTFARELYKNE----------ESRALGDMAARLGISLEKAHRATDDA 202 Query: 188 YATIAMAKLVKT--RQPRLFDYLFT 210 A + + + R PR + L Sbjct: 203 EAALQVLYALAKDPRVPRAYGGLIQ 227 >UniRef50_C5B5Z3 Protein with DNA-directed DNA polymerase-like domain n=1 Tax=Methylobacterium extorquens AM1 RepID=C5B5Z3_METEA Length = 754 Score = 120 bits (300), Expect = 1e-25, Method: Composition-based stats. Identities = 38/199 (19%), Positives = 65/199 (32%), Gaps = 36/199 (18%) Query: 9 STFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 F+ D+ET G P DR + A+ + + + + IT Sbjct: 542 ERFVVIDFETTGLSPNNGDRVIEVGAVEI-VDGRIGRRFQSLA---NPGFPVSARITAIT 597 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 GI+ A + + ++ +N FD + R Sbjct: 598 GISNAMLVD-APPLAEVIREVSAFIE--GATLVAHN-AGFDRRFLQAEMERLGL------ 647 Query: 128 WQHDNSRWD---LLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA-HDA 183 WD +L MR P GL S++L L + G+ +A H A Sbjct: 648 -------WDDREMLCTMRLGKRAYP----------GLGSYKLAFLAEHAGVALPDAMHRA 690 Query: 184 MADVYATIAMAKLVKTRQP 202 +AD AT + +++ R+ Sbjct: 691 LADAMATAELFLVMREREA 709 >UniRef50_B3PN84 DNA polymerase III subunit alpha n=2 Tax=Mycoplasma RepID=B3PN84_MYCA5 Length = 1438 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 70/200 (35%), Gaps = 29/200 (14%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 T++ D ET G P + +F A ++ +I E F+ KP P I Sbjct: 401 SSQTYVVFDLETTGLSPRFNEIIEFGASIIENG--IIKESHQFFIKPTKPIPPS--ITEI 456 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 T IT G ++ +I+ + + +N +FD V + F + D Sbjct: 457 TKITDNTVAN-GYSQEEGVRKIYDIL--KNRICVAHN-AKFDINVCKENFLKYGLD---- 508 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGI--EHSNAHDAM 184 NS+ +D + L E S+RLE + K + + AH A Sbjct: 509 -----NSKIIGIDSLAIARFLIDEA----------KSYRLEIVAKKFNVYYARNEAHRAD 553 Query: 185 ADVYATIAMAKLVKTRQPRL 204 D + L+ + R Sbjct: 554 YDANVLANVWILMILKLARE 573 >UniRef50_Q5P3L6 Nuclease subunit Cho of the excinuclease complex (UvrC homolog protein) n=2 Tax=Rhodocyclaceae RepID=Q5P3L6_AZOSE Length = 469 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 45/258 (17%), Positives = 77/258 (29%), Gaps = 31/258 (12%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 + + D ET G +P DR + A +R + ++G E + Sbjct: 1 MSLPDSLVLIDVETTGANPVSDRVTEIAVLRIERG-EIVGRWESL---VNPERPIPALIQ 56 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 + GIT + A A + + +N RFD RN F R Sbjct: 57 RLVGITDEMVAG-APTFAELADSVRGHL--DGAVFVAHN-ARFDYGFIRNEFSRLGQQFE 112 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 A +L ++ AL PE L+ L + +G H AM Sbjct: 113 AS----------VLCTVKLSRALYPE----------HHRHGLDALIERHGFTCGARHRAM 152 Query: 185 ADVYATIAMAKLVKTRQPR--LFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGN 242 D A+LV L + ++ + G++ ++ G Sbjct: 153 GDTDVLWQFARLVSGSFSADVLALACARAMKLPARPPGLPEGALEGVPDAPGVY-SFFGE 211 Query: 243 TSWVAPLAWHPENRNAVI 260 + + R V+ Sbjct: 212 NDRLLYIGRSASLRARVM 229 >UniRef50_A7A526 Putative uncharacterized protein n=1 Tax=Bifidobacterium adolescentis L2-32 RepID=A7A526_BIFAD Length = 256 Score = 120 bits (300), Expect = 2e-25, Method: Composition-based stats. Identities = 35/193 (18%), Positives = 55/193 (28%), Gaps = 26/193 (13%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 + D ET G P+ DR + AIR + + Sbjct: 82 MVDNYTSIDLETTGFSPSDDRIVEIGAIRVR-NGRPVKRYSQL---INPQRPLPEEITRL 137 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 G+T + R + + I + ++G+N FD R Sbjct: 138 NGLTDADLRNQPTVDQVLPDFIRFI---GNDTLIGHNINEFDAAFLLANTTRLGM----- 189 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 N D L + RA Y P RL + + GI + +H A D Sbjct: 190 -RHIGNKTIDTLPLDRALYPEEP-------------KHRLVDIIRRFGIAQTESHRAADD 235 Query: 187 VYATIAMAKLVKT 199 T + +K Sbjct: 236 ALQTAQCYETMKA 248 >UniRef50_B8GAH5 DNA polymerase III, epsilon subunit n=1 Tax=Chloroflexus aggregans DSM 9485 RepID=B8GAH5_CHLAD Length = 233 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 33/187 (17%), Positives = 57/187 (30%), Gaps = 16/187 (8%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 + D ET G P D A+ ++ ++ + +P P ++ + + Sbjct: 37 PYTVIDVETTGLDPRHDALIAIGAVNVENGRVLLKQTWHSLIRPPPGREPSVESIRVHHL 96 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 TP+E R A A + L ++ + D Sbjct: 97 TPEELRDAPPP-AEVLAELLRLIA--GRVLVVH-VAEIDVRFINAALK----------PF 142 Query: 130 HDNSRWDLLDVMRACYALRPEG--INWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 R +LD R L + D P+ L LT A G+ H+A+ D Sbjct: 143 GGRLRRPILDTARLAMTLHLNAQWLGELPRDMPAPAVELRGLTGALGLPIYAQHNALNDA 202 Query: 188 YATIAMA 194 T + Sbjct: 203 VTTAQLF 209 >UniRef50_C2BET5 3'-5' exonuclease and CRISPR-associated Cas2 family protein n=1 Tax=Anaerococcus lactolyticus ATCC 51172 RepID=C2BET5_9FIRM Length = 295 Score = 119 bits (299), Expect = 2e-25, Method: Composition-based stats. Identities = 37/201 (18%), Positives = 65/201 (32%), Gaps = 29/201 (14%) Query: 3 NDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPG 62 + ++ D ET G P DR + AI+ E K Sbjct: 121 KSQEHTKAYIIIDLETTGLDPINDRIIEIGAIKIGKENKEYSSIIWQDIKL------SEK 174 Query: 63 AVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD 122 ITGI+ ++ KG++E ++GYN + FD + R Sbjct: 175 ISNITGISDEDI-KKGKDEKNAINEFIDFIGED--TLVGYN-INFDIKFINESLKRQEKP 230 Query: 123 PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHD 182 + N +D++ ++ L +++LE + K GI + H Sbjct: 231 ------KIKNMTYDVMQYVKNDKLF-------------LKNYKLETVIKEYGINKNVPHR 271 Query: 183 AMADVYATIAMAKLVKTRQPR 203 A+ DV + + R Sbjct: 272 ALEDVKIIQKLIAKLNKLVKR 292 >UniRef50_D0WQL3 Putative DNA polymerase III, epsilon subunit n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQL3_9ACTO Length = 589 Score = 119 bits (298), Expect = 2e-25, Method: Composition-based stats. Identities = 39/194 (20%), Positives = 63/194 (32%), Gaps = 22/194 (11%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 ++ TF+ D ET G P + + A++ +GE + Sbjct: 40 EEVTFVVVDLETTGAKPGPESITEIGAVKVR-GGETVGEFSTL---VNPGQPIPAFITSL 95 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 TGIT A + I L P T + +N RFD + F Sbjct: 96 TGITTAMTARAPRIAAVIPSLIEFLCAGPSTVVAAHN-ARFDVGHLKAAFA--------- 145 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 +LD + + D +P+F+L L A G + H A+ D Sbjct: 146 GADFTWPSVRVLDTVALARR--------AFSSDEVPNFKLSTLAGACGATTAPNHRALDD 197 Query: 187 VYATIAMAKLVKTR 200 AT+ + + R Sbjct: 198 ARATVDVLHAMLGR 211 >UniRef50_B1MY77 Rad3-related DNA helicase n=3 Tax=Leuconostoc RepID=B1MY77_LEUCK Length = 801 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 47/210 (22%), Positives = 70/210 (33%), Gaps = 28/210 (13%) Query: 5 GKQQSTFLFHDYETFGTHPALD-RPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGA 63 TF+ D ET G A R Q + +I E F Sbjct: 1 MNANKTFVVVDLETTGQSVAKGGRIIQIG-MTFIKNRRIIDHFESF---VNPAQPIDRNI 56 Query: 64 VLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDP 123 +T I+ +E + E A I +L T T I+ +N V FD + F R + Sbjct: 57 QQLTHISQKEVKNAPYFE-EIAPVIQNLLT--DTVIIAHN-VNFDYPYLNDEFARTGFPE 112 Query: 124 YAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDA 183 + +D ++ L P P +RL LT I +NAH A Sbjct: 113 LTNA---------AIDTVQLAQILLPTA----------PGYRLLDLTTYLNITLNNAHRA 153 Query: 184 MADVYATIAMAKLVKTRQPRLFDYLFTHRN 213 AD +AT + + R +L + Sbjct: 154 NADAHATALLFLSLWQRAEQLPTLVLQQLQ 183 >UniRef50_Q315G7 DNA polymerase III, epsilon subunit n=1 Tax=Desulfovibrio desulfuricans subsp. desulfuricans str. G20 RepID=Q315G7_DESDG Length = 239 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 36/201 (17%), Positives = 57/201 (28%), Gaps = 16/201 (7%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F D E G P D A+R + G+ Y +P A LI IT Sbjct: 41 FAVTDMEMTGLDPEHDEIVAIGAVRIRGLSIITGDVFHTYVRPQRSMARP--ATLIHRIT 98 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 P + + A + ++ ++V D R+ Sbjct: 99 PAQLQHSPA----LAGLLPGFVDWCGQALITGHHVGLDMGFLTRACRRHL---------G 145 Query: 131 DNSRWDLLDVMRACYALRPEGINWPEN-DDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 +D MR A E + S+ L L+ G+ AHDA+ D Sbjct: 146 GAPATPCVDTMRLAQAWERERWERSFDPFQPTVSYTLADLSARYGLPQFRAHDALEDALQ 205 Query: 190 TIAMAKLVKTRQPRLFDYLFT 210 T + + + Sbjct: 206 TAYLFLYLVRKLKGGGITTLR 226 >UniRef50_A1SLE5 DNA polymerase III, epsilon subunit n=5 Tax=Actinomycetales RepID=A1SLE5_NOCSJ Length = 601 Score = 118 bits (297), Expect = 3e-25, Method: Composition-based stats. Identities = 36/192 (18%), Positives = 64/192 (33%), Gaps = 26/192 (13%) Query: 10 TFLFHDYETFGTHPALDR-PAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 TF D ET G + A++ V+GE + ++TG Sbjct: 29 TFCVVDLETTGGSAEGGAMITEIGAVKVR-GGEVLGEFQTL---VNPRTEIPAFIAVLTG 84 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 I+ EAA A + + ++ +N FD R + Sbjct: 85 ISNSMVADAPPVEAALPAFLEFA---AGSVLVAHN-APFDVGFLRYFAEQQGRP------ 134 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 ++++D R + + D P+ +L L KA G + H A++D Sbjct: 135 ---WPGFEVVDTARLARRV--------VSRDDAPNCKLSSLAKAFGSTTTPNHRALSDAR 183 Query: 189 ATIAMAKLVKTR 200 AT+ + + R Sbjct: 184 ATVDVLHGLMER 195 >UniRef50_B1Y7R5 DNA polymerase III, epsilon subunit n=6 Tax=Proteobacteria RepID=B1Y7R5_LEPCP Length = 731 Score = 118 bits (296), Expect = 4e-25, Method: Composition-based stats. Identities = 35/207 (16%), Positives = 55/207 (26%), Gaps = 27/207 (13%) Query: 11 FLFHDYETFGTHP-ALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 + D ET G +P D Q A R + E F P + I GI Sbjct: 541 YTVFDTETTGLNPSDGDEIIQIGATRISGG--KLRRQESFEQLVDPQRPIPPAGIPIHGI 598 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 P + + A F T ++ +N FD + R Sbjct: 599 KPDMVAGQPTIDHVLPA--FHAFAQ-DTVLVAHNAA-FDMRFLQLKQDRTGLVFDQ---- 650 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 +LD + + P S RLE + + I H A+ D Sbjct: 651 ------PVLDTLLLSAVVHPN----------QESHRLEAIAERFSITVVGRHTALGDAMV 694 Query: 190 TIAMAKLVKTRQPRLFDYLFTHRNKHK 216 T + + + + Sbjct: 695 TAEVFVRLIPLLHAMGIETLGQAREAA 721 >UniRef50_O67074 DNA polymerase III subunit epsilon n=3 Tax=Aquificaceae RepID=DPO3E_AQUAE Length = 202 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 35/199 (17%), Positives = 58/199 (29%), Gaps = 27/199 (13%) Query: 2 MNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQP 61 M D TF+ D E G AA+R + +I E P Y Sbjct: 10 MRDNLLDGTFVVIDLEATGFDVEKSEVIDLAAVRVEGG--IITEKFSTLVYP--GYFIPE 65 Query: 62 GAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 +TGIT + E + I+ + V D + Sbjct: 66 RIKKLTGITNAMLVGQPTIEEV----LPEFLEFVGDNIVVGHFVEQDIKFINK------- 114 Query: 122 DPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAH 181 Y ++ R L ++ + P GL + L+ + + G E + H Sbjct: 115 --YTKQYRGKKFRNPSLCTLKLARKVFP----------GLKKYSLKEIAENFGFETNGVH 162 Query: 182 DAMADVYATIAMAKLVKTR 200 A+ D T + + Sbjct: 163 RALKDATLTAEIFIKILEE 181 >UniRef50_Q11UG6 DNA polymerase III, epsilon subunit n=1 Tax=Cytophaga hutchinsonii ATCC 33406 RepID=Q11UG6_CYTH3 Length = 449 Score = 118 bits (296), Expect = 5e-25, Method: Composition-based stats. Identities = 49/252 (19%), Positives = 79/252 (31%), Gaps = 31/252 (12%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 + D ET G H + +R + A + D I + P + +TGI Sbjct: 3 YSIIDIETTGGHASGNRIIEIAIYKFD--GEKITDTYQTLINP--ERRIPVFITSLTGID 58 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 + A A I + + +N V FD + + PY Sbjct: 59 TEMVADAPVF-ADVAREITDFTR--DSVFVAHN-VNFDYTFVKKEL-QALNMPYNLPK-- 111 Query: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190 L +R + P GLPS+ L +L + GI+ N H A D AT Sbjct: 112 -------LCTVRLSRKIFP----------GLPSYSLGNLCGSLGIDVQNRHRAAGDAEAT 154 Query: 191 IAMA-KLVKTRQPRLFDYLFTHRNKHKLMAL-IDVPQMKPLVHVSGMFGAWRGNTSWVAP 248 + + KL+ +K L+ + Q L G++ V Sbjct: 155 VRLLNKLLLNDTEGFIPKSLKKNSKETLLPANLPREQFDALPETFGVYYFHDHK-GKVIY 213 Query: 249 LAWHPENRNAVI 260 + + VI Sbjct: 214 VGKANNIKKRVI 225 >UniRef50_UPI0000D537B4 Exodeoxyribonuclease I n=1 Tax=Psychroflexus torquis ATCC 700755 RepID=UPI0000D537B4 Length = 212 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 41/202 (20%), Positives = 78/202 (38%), Gaps = 34/202 (16%) Query: 288 TDLGDNAAVPVKLVHINKCPVLAQANTLRPEDADRLGINRQHCLDNLKILRENPQVREKV 347 + +++ ++ V NK VL ++ + I + +KIL NPQ E + Sbjct: 7 SKALESSPKIIRTVKCNKSLVLLNSDYA-MKTQKYSEIGLEEIHRRVKILDNNPQFIELI 65 Query: 348 VAIFAEAEPFTPSDNVDAQL------YNGFFSDADRAAMKIVLETEPRNLPALDITFVDK 401 +I ++ S + L Y GF + D+A MK E + + L F ++ Sbjct: 66 GSILSDKAQQKMSMDQTELLFEETIYYGGFAKEKDKAVMKKFHEVDWKEKVNLIDKFSEE 125 Query: 402 R----------------IEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYAD 445 R + K +FN R+F L +++W + + Sbjct: 126 RFQYFAKCLIYEESPESLPKSIFNEINRSFAQRLLSKNKEKWE----------TIPSFYS 175 Query: 446 ELQMLVQ-QYADDKEKVALLKA 466 E+ L + +Y DD+E + L++ Sbjct: 176 EVDTLRELKYQDDEEMLELIEQ 197 >UniRef50_UPI00019768DE DNA polymerase III alpha subunit n=1 Tax=Bifidobacterium bifidum NCIMB 41171 RepID=UPI00019768DE Length = 180 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 36/203 (17%), Positives = 61/203 (30%), Gaps = 26/203 (12%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQ 60 M+ DG ++ D ET G D +F A++ + + + Sbjct: 1 MLPDGTLPDDYVVLDLETTGVSWYRDTIIEFGAVKV-VDRKPVDTYQQL---VNPMRNLN 56 Query: 61 PGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNF 120 P +TGITP ++G+N ++FD + R Sbjct: 57 PFITQLTGITPDMLE-PAPTLDTVLPDFLRW--CGDDAMIGHNIMQFDIKFIDLAAQRIL 113 Query: 121 YDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNA 180 + N D L + R+ Y RL L + I Sbjct: 114 H------HAVPNRIIDTLQMSRSMYPQYNR-------------HRLVDLIQRFDIADVEE 154 Query: 181 HDAMADVYATIAMAKLVKTRQPR 203 H A++D T + ++ Q R Sbjct: 155 HRALSDAEQTQMCFEYMRDEQRR 177 >UniRef50_C6D2T0 DNA polymerase III, alpha subunit n=2 Tax=Paenibacillus RepID=C6D2T0_PAESJ Length = 1437 Score = 118 bits (295), Expect = 5e-25, Method: Composition-based stats. Identities = 30/219 (13%), Positives = 60/219 (27%), Gaps = 30/219 (13%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 ++ D ET G ++ + A ++ + F +T I Sbjct: 421 YIVFDIETTGLSIINNKIIELAGVKMREG-KEVDRFSTF---INPHEKIPYHIQQLTNIN 476 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 + + E E I + + ++ +N RFD + Sbjct: 477 DEMVKDAPELEPKLREFIDFI---GDSILVAHN-ARFDIGFIQANLKSIGMPDVTNP--- 529 Query: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190 +LD + L P + + RL L+ + N H A+ D A Sbjct: 530 ------VLDTLELARFLHPT----------MKNHRLNTLSAKYKVSLDNHHRAVDDSVAL 573 Query: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPL 229 + + N + +D+ +P Sbjct: 574 GGVLFGLINDAAERNITGLHQLNDY---VGLDISNSRPF 609 >UniRef50_UPI0001B9EC75 DnaQ family exonuclease/DinG family helicase n=1 Tax=Geobacillus sp. Y412MC10 RepID=UPI0001B9EC75 Length = 958 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 39/191 (20%), Positives = 64/191 (33%), Gaps = 27/191 (14%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 F D+ET G + + D Q + + ++ V+ P +TGI Sbjct: 2 KFAVLDFETTG-NQSADEIIQVGLAIIEEDRSI---SRVYGTYVNPGIPIPPFITGLTGI 57 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 + + E + L ++G+N V FD +N R Y P++ Sbjct: 58 SDSDVADAPSLEEMMMELVPML---DDVVLVGHN-VAFDFNFLQNALDRCGYLPFSGR-- 111 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 +LD M P LPS++L ++ G+EH H A +D A Sbjct: 112 -------ILDTMHFLKICFPS----------LPSYQLGMVSSHFGLEHDRPHQADSDALA 154 Query: 190 TIAMAKLVKTR 200 T Sbjct: 155 TAYALLKCLEE 165 >UniRef50_B7A7U0 Putative PAS/PAC sensor protein n=1 Tax=Thermus aquaticus Y51MC23 RepID=B7A7U0_THEAQ Length = 627 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 57/187 (30%), Gaps = 31/187 (16%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 + D ET G P D A+ + EV+ + + G+T Sbjct: 443 YTAFDLETTGLDPREDAIIALGAVHLLGS--RVLRHEVYEALVDPGRPIPKASTEVHGLT 500 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 + + K + E + + ++ +N FD R + Sbjct: 501 WEMLKDKPKLE-EVLPAFRAFLE--GSVLVAHNGA-FDMAFLR---------------KV 541 Query: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190 + L+D + + L P+ L RLE L + G+ H A+ D T Sbjct: 542 GIDQPPLVDTLLLAHLLFPD----------LKDHRLERLAERFGVPVLGRHTALGDALMT 591 Query: 191 IAMAKLV 197 + + Sbjct: 592 AEVYARM 598 >UniRef50_A4YW65 Putative uncharacterized protein n=2 Tax=Bradyrhizobium RepID=A4YW65_BRASO Length = 737 Score = 118 bits (295), Expect = 6e-25, Method: Composition-based stats. Identities = 37/196 (18%), Positives = 61/196 (31%), Gaps = 34/196 (17%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 + ++ D ET G+ + DR + A++ ++ + V +T Sbjct: 560 EQDYVVVDIETTGSWSSGDRITEIGAVKVR-NHQLVEQWHSL---INPQRPIPAKIVELT 615 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRN---FYDPY 124 GIT Q R A + + +N V FD + F R F P Sbjct: 616 GITNQMVRDAPVFH-EIADSFMAFM--GDGIFVAHN-VNFDYGFLSSEFERLERRFRFPK 671 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 + R+ G S+ L L GIE + H A+ Sbjct: 672 LCTCVGMRRRYP-----------------------GHTSYGLGKLCAIYGIELDDHHRAL 708 Query: 185 ADVYATIAMAKLVKTR 200 D A + L+ T+ Sbjct: 709 CDARAAAHLLNLINTK 724 >UniRef50_B4S7Q3 Exonuclease RNase T and DNA polymerase III n=1 Tax=Prosthecochloris aestuarii DSM 271 RepID=B4S7Q3_PROA2 Length = 189 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 52/201 (25%), Positives = 76/201 (37%), Gaps = 23/201 (11%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIR-TDSEFNVIGEPEVFYCKPADDYLPQPGA 63 Q L+ D ET GT+PA Q AI D V+ E C P + P A Sbjct: 1 MNQHKKVLYCDVETTGTNPAKHGIIQIGAIIEVDG---VVVEECNLKCAPHEGAEISPDA 57 Query: 64 VLITGITPQEARAKGENEAA-------FAARIHSLFTVPKTCILGYNNVRFDDEVTRNIF 116 + I+G E ++ + A + I K GYN + FD + F Sbjct: 58 LAISGTERSELESRMTSHEAYTQFRHFLSRHIEQYDREDKCYPAGYN-IHFDLNFIQAWF 116 Query: 117 YRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE 176 R+ D Y + D L ++ I LP +RLE + + GI Sbjct: 117 -RHHGDKYGIGSFINWRMLDPLPLL---------FIKDFTRQITLPDYRLETVCRHFGIA 166 Query: 177 HSNAHDAMADVYATIAMAKLV 197 +AHDAM+D+ AT + + Sbjct: 167 L-HAHDAMSDIRATRELLLKL 186 >UniRef50_C9ZG17 Putative DNA polymerase III, epsilon chain (EC 2.7.7.7) n=1 Tax=Streptomyces scabiei 87.22 RepID=C9ZG17_STRSW Length = 613 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 59/325 (18%), Positives = 97/325 (29%), Gaps = 47/325 (14%) Query: 14 HDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQE 73 D ET G P DR + + D++ N GE D P P V + G+T Sbjct: 22 VDVETSGLRPGRDRVLSLSILTLDAQGNQTGEFSTL---LNPDCDPGP--VHVHGLTADR 76 Query: 74 ARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNS 133 E A ++ +L + ++ +N +FD + + F + SW + Sbjct: 77 LAGAPAFE-EIAPQVGALLSSR--VLVAHN-AQFDYDFLAHEFAQ------VRSWAPVSR 126 Query: 134 RWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAM 193 R L + R P+ +L L G+ AHDA DV + Sbjct: 127 RLCTLALNRLVGPATPD-------------LKLGTLAAHYGVRQEKAHDAQDDVRVLSGI 173 Query: 194 AKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWRGNTSWVAPLAWHP 253 + P + + G + PL Sbjct: 174 LRG-SLSAAEQLGLALPVLGCPPRQDYRPYVPKTPCAYRN------PGRMAPGGPLVQGM 226 Query: 254 ENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQAN 313 + I D + + L R A ++ + + +V N P A Sbjct: 227 K---VAITGD--------TRVSREELVARSVAAGLNMMTSVSGQTSVVVTN-APGTGSAK 274 Query: 314 TLRPEDADRLGINRQHCLDNLKILR 338 R D ++ L LKIL+ Sbjct: 275 LKRAADEGVPLVDEPTYLRLLKILQ 299 >UniRef50_Q67NP5 ATP-dependent DNA helicase n=1 Tax=Symbiobacterium thermophilum RepID=Q67NP5_SYMTH Length = 958 Score = 117 bits (294), Expect = 7e-25, Method: Composition-based stats. Identities = 41/203 (20%), Positives = 61/203 (30%), Gaps = 28/203 (13%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 +F+ D ET GT P DR + AA+R + IG +TG Sbjct: 4 RSFVAIDVETTGTSPEHDRLIEVAAVRF-EDGREIGCFSRL---IDPGCPVPQRIQHLTG 59 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 I P K E + L + L +N FD + F R Sbjct: 60 IHPAMLAGKPRIEEV----VPDLASFLGDLPLVAHNAPFDVAFLQAAFARAGR------- 108 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 N +D ++ R L + RL L + G+ + H A D Sbjct: 109 SLPNWSYDTAELARVALPLA-------------RNHRLATLAELLGLPLEHHHRAEDDAR 155 Query: 189 ATIAMAKLVKTRQPRLFDYLFTH 211 A + + R + L Sbjct: 156 ACGRLFLRLLERLASMDMGLLQF 178 >UniRef50_D0WFC5 DNA polymerase III, alpha chain n=1 Tax=Slackia exigua ATCC 700122 RepID=D0WFC5_9ACTN Length = 291 Score = 117 bits (293), Expect = 8e-25, Method: Composition-based stats. Identities = 35/183 (19%), Positives = 58/183 (31%), Gaps = 26/183 (14%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 S ++ D ET G +P D + AAIR E + F C +T Sbjct: 125 PSEYVVVDIETTGLNPNKDEIIELAAIRVRGGR----ETDAFQCLVRCGGELSDAIAKLT 180 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 G++ A+G + I+ +N FD ++ +D + Sbjct: 181 GLSHSRLMAEGLILENALMNFLEFVS--DDLIVAHN-AEFDIGFIQSACEELDWDDFDN- 236 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 D LD + P+ RL L + +E+ H A++D Sbjct: 237 --------DYLDTLALARKKLPQI----------SDHRLSSLAERLHLENRQPHRALSDC 278 Query: 188 YAT 190 T Sbjct: 279 RLT 281 >UniRef50_C2E9B0 DNA-directed DNA polymerase III epsilon subunit n=1 Tax=Lactobacillus ruminis ATCC 25644 RepID=C2E9B0_9LACO Length = 968 Score = 117 bits (293), Expect = 9e-25, Method: Composition-based stats. Identities = 38/208 (18%), Positives = 71/208 (34%), Gaps = 28/208 (13%) Query: 1 MMNDGKQQSTFLFHDYETFGTHPA-LDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLP 59 ++ T+ D E GT+P +R QF+ + T+ N I P Sbjct: 30 LVKKMSNLQTYAVVDLEMTGTNPNGSERLIQFSCVFTE--GNKIVNTFSTLINPLRK--I 85 Query: 60 QPGAVLITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRN 119 +T IT ++ A I++L + T + +N + D + F R Sbjct: 86 PEDVQNLTNITDKDV-KSAPTFDEVAGTIYALLS--DTVFVAHN-IELDYRFLNSEFERI 141 Query: 120 FYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSN 179 + +D ++ P L S+RL L G +H + Sbjct: 142 GFPKLDLEG---------IDTVQLAQIAFPT----------LASYRLGDLAHFLGFKHKH 182 Query: 180 AHDAMADVYATIAMAKLVKTRQPRLFDY 207 H A +D + T + L++ + + + Sbjct: 183 PHHADSDAFVTAELFILLQKKLASMPEA 210 >UniRef50_B3QSB2 DNA polymerase III, epsilon subunit n=1 Tax=Chloroherpeton thalassium ATCC 35110 RepID=B3QSB2_CHLT3 Length = 578 Score = 117 bits (293), Expect = 1e-24, Method: Composition-based stats. Identities = 40/197 (20%), Positives = 55/197 (27%), Gaps = 27/197 (13%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 +TF D ET G +R + AI+ + V + + T Sbjct: 21 DATFAVVDLETTGGLKPENRIIEICAIKCRNGQEV----GMLESLVNPEQQISYFISQYT 76 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 GIT + + ++ F T + +N V FD RN Y Sbjct: 77 GITNSMVDNAPVIQ-SLLTKVSEFFQE--TIFVAHN-VPFDMGFINMELERNGYAKLTNR 132 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 W L R L P L L K GI N H A D Sbjct: 133 W---------LCTFRLARRLLPTQQK----------KNLGDLAKYFGIIVENRHRARGDC 173 Query: 188 YATIAMAKLVKTRQPRL 204 ATI + + Sbjct: 174 EATIKLLAELIILAQEQ 190 >UniRef50_D1W6A9 UvrD/REP helicase n=3 Tax=Prevotella RepID=D1W6A9_9BACT Length = 904 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 49/218 (22%), Positives = 79/218 (36%), Gaps = 23/218 (10%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 +Q + D ET G + D Q AA+R V G V + + D +PQ + Sbjct: 518 EQQDIVVFDTETTGLNVFEDDIVQIAAVRMRQGKVVPGSSFVVFMETDRD-IPQQLGEIE 576 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 + + R + A + +LG+N +D + R A Sbjct: 577 NPLIAEMQRHVLHSHAEGLQMFMDYV--GDSMLLGHN-ADYDYHILDFNLQRYLP---AI 630 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 S + R+ LD ++ L P L ++L+HL +E NAH A AD Sbjct: 631 SLKEQCPRY--LDSLKLVRLLEPN----------LREYKLKHLLSVLHLEGENAHLADAD 678 Query: 187 VYATIAMAKLV----KTRQPRLFDYLFTHRNKHKLMAL 220 V AT + + K P +++ R K + L Sbjct: 679 VDATCNVVRHCYGKAKLMVPSQLEWIRHPRFKKRAEVL 716 >UniRef50_B7GKX3 Exonuclease n=2 Tax=Bacillaceae RepID=B7GKX3_ANOFW Length = 222 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 38/210 (18%), Positives = 64/210 (30%), Gaps = 27/210 (12%) Query: 11 FLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 F D ET G H A DR + A++ + E Y P D P V +T I Sbjct: 29 FTVFDTETTGFHVATVDRLIEIGAVQVKGTAVIEDETFHTYVNPNRDLPPV--IVELTNI 86 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 T ++ + ++ + + FD V ++ R ++ Sbjct: 87 TEEKV-KHAPTAIEALQQFFQFVEQKQSVCFVGHYISFDLFVLKHELRREKMKFRKPTFI 145 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYA 189 DL+ + Y +R LE +A G H A+ D Sbjct: 146 ---DTLDLIGFIAPSYDMRD----------------LERYAQAFGTRMYERHSAIGDALT 186 Query: 190 TI----AMAKLVKTRQPRLFDYLFTHRNKH 215 T + + + R R + L + Sbjct: 187 TAYLFVELLQQFRLRGYRTWGELLRATDSQ 216 >UniRef50_C5WML0 Putative uncharacterized protein Sb01g037840 n=1 Tax=Sorghum bicolor RepID=C5WML0_SORBI Length = 583 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 39/221 (17%), Positives = 61/221 (27%), Gaps = 34/221 (15%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 +T L D ET G DR +FA N P + + Sbjct: 380 PATILVFDIETTGFSRREDRIIEFAVRDLMGGKN---STFQTLINPEKEVRNAY----VH 432 Query: 68 GITPQEARAKGENEA-AFAARIHS-----LFTVPKTCILGYNNVRFDDEVTRNIFYRNFY 121 GI+ + + +N FD F R Sbjct: 433 GISNSMLCRPDVPRFGELVPILLQYVWSRQMDGKPVLWVAHNGRSFDVPFLIFEFRRCKL 492 Query: 122 D-PYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIE-HSN 179 + P W + D L + R + L S L++L + I + Sbjct: 493 EMPGDWLF------VDTLPIARQL---------VDSDGSKLSSVSLKNLRERYNIPLTGS 537 Query: 180 AHDAMADVYATIAMAKL----VKTRQPRLFDYLFTHRNKHK 216 AH AM DV + + +K P+L + F + Sbjct: 538 AHRAMQDVTTLCYVLQKLTFELKLTVPQLLEKSFQASDLPA 578 >UniRef50_Q2Z0D2 Rad3-related DNA helicases n=1 Tax=uncultured candidate division WS3 bacterium RepID=Q2Z0D2_9BACT Length = 965 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 39/227 (17%), Positives = 70/227 (30%), Gaps = 31/227 (13%) Query: 5 GKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAV 64 TF+ D ET G +DR + A+R + V E F V Sbjct: 22 NAYPRTFVGLDLETTGVDSRVDRIIEVGAVRV-VDGRVADTFESF---VNPGCPIPSDIV 77 Query: 65 LITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPY 124 +TGI+ + + I + + I+ ++ FD P Sbjct: 78 HLTGISDADVAGAPTIDEVLPRIIEFI---GGSPIVAHH-APFDTGFLDEA---AGGRPG 130 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 + + D + AL P LP+ RL + I +H A Sbjct: 131 LLVGRGG-----VFDTLPLTRALLPR----------LPNHRLATAARFFDIPTGRSHRAT 175 Query: 185 ADVYA----TIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMK 227 D A +A+ ++ + D ++ + LI+ + + Sbjct: 176 DDARAVSDLFLALLGVLDQIGATVLDRMYRLAD-TATRTLIEAARER 221 >UniRef50_A8LH88 Exonuclease RNase T and DNA polymerase III n=2 Tax=Actinomycetales RepID=A8LH88_FRASN Length = 389 Score = 117 bits (292), Expect = 1e-24, Method: Composition-based stats. Identities = 42/200 (21%), Positives = 58/200 (29%), Gaps = 28/200 (14%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 + D ET G P DR A + T ++ V P P V I G Sbjct: 75 RPYAVVDVETTGLSPTRDRVLSVAVVLTAADGTVEHRWSTL---LDPGCDPGP--VHIHG 129 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 +T Q AA A + L ++ +N FD + R + Sbjct: 130 LTRQRLAGS-PTFAAVADEVAGLLA--GRVLVAHNAA-FDWRMLAGEAMRIG------TT 179 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 R L + LPS RL L G+ AHDA D Sbjct: 180 IPVEWRLCTLTLA-------------SRLGLELPSLRLASLAAYWGVVQRRAHDAQDDAE 226 Query: 189 ATIAMAKLVKTRQPRLFDYL 208 A+ + R + L Sbjct: 227 VLAALLPRILQRAADQYLEL 246 >UniRef50_D1BFZ9 Exonuclease, DNA polymerase III, epsilon subunit family n=14 Tax=Actinomycetales RepID=D1BFZ9_SANKS Length = 616 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 34/196 (17%), Positives = 59/196 (30%), Gaps = 25/196 (12%) Query: 7 QQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLI 66 + TF+ D ET G + A++ VIGE + + + Sbjct: 58 SEVTFVVVDLETTGGSSKDAGITEIGAVKVR-GGEVIGEFQSL---VNPGHPVPAFIARL 113 Query: 67 TGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAW 126 TGIT + E + + F T ++ +N FD + Sbjct: 114 TGITTLMVSSAPSIELVLPSFL--EFAR-GTVLVAHN-APFDISFLKAAAR------SMD 163 Query: 127 SWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMAD 186 N D + + R D P+ +L L + H A++D Sbjct: 164 LAWPGNQVLDTVPLARRV-----------VTRDEAPNHKLGTLAALFRATITPDHRALSD 212 Query: 187 VYATIAMAKLVKTRQP 202 AT+ + + R Sbjct: 213 ARATVDVMHALFDRMA 228 >UniRef50_D0WQJ6 Exonuclease, DNA polymerase III, epsilon subunit family n=1 Tax=Actinomyces sp. oral taxon 848 str. F0332 RepID=D0WQJ6_9ACTO Length = 206 Score = 116 bits (291), Expect = 1e-24, Method: Composition-based stats. Identities = 37/205 (18%), Positives = 61/205 (29%), Gaps = 27/205 (13%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 + D ET G P DR + + D GE + P GAV + G+T Sbjct: 3 YAVVDVETTGLSPVRDRIVEIGVVLLDESGEPEGEWQSL-VNPLRGM----GAVFVHGLT 57 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 + A A +I LF+ ++ +N FD F R + Sbjct: 58 DADV-ADAPTLADLLPQIRGLFS--GRALVAHN-ATFDVGFLNASFARAG-------YGM 106 Query: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190 R + M P G L + G+ + H A+AD + Sbjct: 107 HVPREATVCTMELSKIYLPPGR-----------HGLAAAAERAGVATAKRHRALADAHTA 155 Query: 191 IAMAKLVKTRQPRLFDYLFTHRNKH 215 + + + Y ++ Sbjct: 156 AGLLRHYLNAEADGVRYAERAFSRS 180 >UniRef50_UPI0001AEDE41 DNA polymerase III n=2 Tax=Streptomyces RepID=UPI0001AEDE41 Length = 641 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 42/221 (19%), Positives = 66/221 (29%), Gaps = 29/221 (13%) Query: 14 HDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQE 73 D ET G DR A I + GE P P V + G+T + Sbjct: 23 VDVETSGLVARRDRVLSVAVITIGPDGEQTGEFSTL---LDPGCDPGP--VEVHGLTAER 77 Query: 74 ARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQHDNS 133 R A RI ++ ++ +N +FD + + F R A W + Sbjct: 78 LRG-APTFDQVAGRIGAMLQ--DRVLVAHN-AQFDYDFLAHEFAR------ARMWLPVSQ 127 Query: 134 RWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYATIAM 193 R L + R + D +L L + AHDA+ D + Sbjct: 128 RLCTLALNR-------------QVDPPTDDMKLGTLATHYDVPQQRAHDALDDTRVLAGI 174 Query: 194 AKLVKTRQPRLFDYLFTHRNKHKLMALI-DVPQMKPLVHVS 233 + RL L + + P P + + Sbjct: 175 LRASLREAARLDLPLPLVTCPPRAESQFTPKPPKTPCAYRN 215 >UniRef50_O68045 DNA polymerase III subunit epsilon-like protein n=6 Tax=Rhodobacteraceae RepID=DPO3E_RHOCA Length = 704 Score = 116 bits (291), Expect = 2e-24, Method: Composition-based stats. Identities = 40/191 (20%), Positives = 52/191 (27%), Gaps = 29/191 (15%) Query: 10 TFLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 TF+ D ET G P D Q AA+R + V GE P + + G Sbjct: 509 TFVVFDTETTGLFPTGGDEIVQIAAVRIVNGRRVAGEVFDTLVNP--GRPIPAASTAVHG 566 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 IT A R H ++ +N FD E R Sbjct: 567 ITEAMVATAPAI-AEVGRRFHKF--AEGAVLVAHN-APFDLEFLRR-------KELLIGK 615 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANG--IEHSNAHDAMAD 186 DN D + L+ LT G I H A+ D Sbjct: 616 NFDNPVLDT-------------VLLSAVVFGAAEGHSLDALTHRLGITIPEEARHTALGD 662 Query: 187 VYATIAMAKLV 197 AT + Sbjct: 663 TVATAEAFLRL 673 >UniRef50_Q1MZX4 Putative uncharacterized protein n=1 Tax=Bermanella marisrubri RepID=Q1MZX4_9GAMM Length = 738 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 34/195 (17%), Positives = 63/195 (32%), Gaps = 28/195 (14%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 + ++ D ET G R + ++ ++ E + P +T Sbjct: 570 EQPYVIVDVETTGGRKEQHRVTEVGMVKV-LNGEIVDEWQSL-INPMRHIPQS--ITRLT 625 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 GI+ + + A I + + +N V FD R+ F R +A Sbjct: 626 GISNEMVSNAPVFD-DVADEIAEFCA--GSVFVAHN-VNFDYGFFRSEFERLGRRFHAPK 681 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 L ++ P G S+ L L A I+ N H A+ D Sbjct: 682 ----------LCTVQMSRKYLP----------GHSSYSLGKLCAALDIDLENHHRALDDA 721 Query: 188 YATIAMAKLVKTRQP 202 A + +L++ ++ Sbjct: 722 KAAAHVFRLIQEKRQ 736 >UniRef50_Q5WGA7 ATP-dependent DNA helicase DinG n=3 Tax=Bacillus RepID=Q5WGA7_BACSK Length = 942 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 33/206 (16%), Positives = 60/206 (29%), Gaps = 30/206 (14%) Query: 7 QQSTFLFHDYETFGTHPALD-RPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 +F+ D ET G P + Q A++ + F P Sbjct: 1 MSQSFVVIDLETTGNSPDQGAKMIQIGAVKV-EGCTITDRFSTF---VDPGCSIPPFITE 56 Query: 66 ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYD-PY 124 +TGIT ++ A + + + ++ +N V FD P Sbjct: 57 LTGITDKDVEGAPVF-REIATDLLAFME--GSSLVAHN-VPFDKGFLEAQLETEGLRLPK 112 Query: 125 AWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAM 184 + D + L P S++L L+ + ++H H A Sbjct: 113 CCQF----------DTVELSRVLLPT----------QESYKLSELSSSLDMDHDRPHRAD 152 Query: 185 ADVYATIAMAKLVKTRQPRLFDYLFT 210 +D T + + + RL Sbjct: 153 SDAEITAELFIKLLHKLERLPLVTLQ 178 >UniRef50_C1DBV5 Probable DNA-directed DNA polymerase III n=1 Tax=Laribacter hongkongensis HLHK9 RepID=C1DBV5_LARHH Length = 493 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 34/190 (17%), Positives = 55/190 (28%), Gaps = 31/190 (16%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 ++ D ET G H DR + + V P +T Sbjct: 3 DRPYVIVDLETTGGHITRDRITEIGLVEVSHG--VTTRWSQL---VNPGQPIPPFIEEMT 57 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 GI+ A+ A A + + ++ +N RFD +N F R Sbjct: 58 GISDAMV-AEAPPFAELAPALLARLN--GKLLIAHN-ARFDYGFLKNEFRRLGLTFTT-- 111 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSN--AHDAMA 185 D L ++ L P+ L+ L +GI+ H A+ Sbjct: 112 --------DPLCTVKLSRRLYPQ----------HAKHSLDSLIARHGIDVPPGMRHRALG 153 Query: 186 DVYATIAMAK 195 D A + Sbjct: 154 DAEAVYVFLQ 163 >UniRef50_C6A933 DNA polymerase III alpha subunit n=4 Tax=Bifidobacterium animalis subsp. lactis RepID=C6A933_BIFLB Length = 188 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 34/188 (18%), Positives = 57/188 (30%), Gaps = 26/188 (13%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 ++ D ET G DR + A++ + ++ +T Sbjct: 8 PMNYISLDLETTGFSAQNDRITEIGAVKVR-DGKIVDRFTQL---VNPGRRVSARITELT 63 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 GI+ + + E IH ++G+N +FD R F D +S Sbjct: 64 GISNEMLEDQPVIEDILGDFIH---WTENDRLVGHNT-KFDLSFLIANAERVFSDSTRFS 119 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 + +D M L P RL L + GI H A++D Sbjct: 120 VRP-------IDTMHIDRLLFPSER-----------HRLVDLIQRYGIGDVEEHRALSDA 161 Query: 188 YATIAMAK 195 T + Sbjct: 162 TQTYQCLE 169 >UniRef50_D1PV56 DNA-directed DNA polymerase III epsilon subunit n=9 Tax=Prevotella RepID=D1PV56_9BACT Length = 287 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 38/190 (20%), Positives = 58/190 (30%), Gaps = 24/190 (12%) Query: 6 KQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVL 65 + D ET G A DR Q + I+ D + N E + + P + P Sbjct: 4 NLTKPLIIFDLETTGLDLATDRIIQISYIKVDPQGNE--ERKSLFVNP--EKPIPPFVQE 59 Query: 66 ITGITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYA 125 +T IT + A + F G+N+ RFD + F R D Sbjct: 60 LTHITDDMVKD-APTFKQIAKSLQETFA--GCDFAGFNSNRFDVPMLAEEFLRAGVD--- 113 Query: 126 WSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMA 185 D R L+D + + P + + AH A Sbjct: 114 ----FDFQRCRLIDAQNIFHKMEPRNLAAAYRFYTGNKME----------DDFQAHRADE 159 Query: 186 DVYATIAMAK 195 D AT + + Sbjct: 160 DTEATYRVLQ 169 >UniRef50_A0PN08 DNA polymerase n=1 Tax=Mycobacterium ulcerans Agy99 RepID=A0PN08_MYCUA Length = 500 Score = 116 bits (290), Expect = 2e-24, Method: Composition-based stats. Identities = 42/190 (22%), Positives = 61/190 (32%), Gaps = 27/190 (14%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 F D+ET G DR + + +E ++ E P D GA GI Sbjct: 98 FAVLDFETTGFAAEYDRVVEVGLVLLSAEGDIEDEWSTL-INPHRDV----GATERHGIR 152 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 ++ EA + L + +N V FD R P W Sbjct: 153 ARDVLGAPAFEAIIPRLLRDL---RGRVFVAHN-VNFDQRFLLAELRRAGV-PLDNPWLT 207 Query: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190 L MR L P S +L A G+ ++AH A+AD AT Sbjct: 208 G------LCTMRWAGRLLPAA-----------SRKLPDCCDAAGVFLTDAHRALADARAT 250 Query: 191 IAMAKLVKTR 200 ++ K + Sbjct: 251 ASLLKYLIDH 260 >UniRef50_B1C737 Putative uncharacterized protein n=1 Tax=Anaerofustis stercorihominis DSM 17244 RepID=B1C737_9FIRM Length = 204 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 39/192 (20%), Positives = 66/192 (34%), Gaps = 26/192 (13%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 + D ET G +P + + A++ + ++ E F P D + P +T Sbjct: 21 PEDYTVIDIETTGLNPDENEIIEVGAVKVR-DRKIVDEFSSF-VSPKKD-IISPEIRKLT 77 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 GI + E R + +LG+N V FD + + R Sbjct: 78 GIDEAMIEGADQIE-DVIPRFNEFI--DGEILLGHN-VNFDINFLYDNYERY------SD 127 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 + N DLL + R L PE + +LE + K GI+ H A++D Sbjct: 128 FYLSNDYVDLLKISR---KLSPE----------FENHKLETVLKKLGIKVDQQHRAVSDC 174 Query: 188 YATIAMAKLVKT 199 + + Sbjct: 175 IDAHHCFEKYRE 186 >UniRef50_D0MIT4 Putative sensor with HAMP domain n=1 Tax=Rhodothermus marinus DSM 4252 RepID=D0MIT4_RHOM4 Length = 616 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 42/208 (20%), Positives = 65/208 (31%), Gaps = 31/208 (14%) Query: 11 FLFHDYETFGTHPAL-DRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 + D ET G HP D A+R E P +V + GI Sbjct: 422 YTVFDTETTGLHPEQGDEIIAIGAVRIVGGRIRPEETFDQLVNPRRP--ISLDSVRVHGI 479 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 P + K E R + T ++G+N V FD + R + Sbjct: 480 QPVLLQDKPPIE-EVLPRFYRFAR--DTVLVGHN-VAFDLKFIRQ------------KEK 523 Query: 130 HDNSRWD--LLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 R+D +LD M + PE + + L+ L A GIE H A+ D Sbjct: 524 ALGLRFDQPVLDTMLLAAVVDPERQH----------YGLDELAAAFGIEPVGRHSALGDA 573 Query: 188 YATIAMAKLVKTRQPRLFDYLFTHRNKH 215 T + + + + + Sbjct: 574 LITAELLLRLLPLLEQRGIHTLRQAREA 601 >UniRef50_Q5SK39 DNA polymerase III epsilon chain-like protein n=2 Tax=Thermus thermophilus RepID=Q5SK39_THET8 Length = 624 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 45/219 (20%), Positives = 66/219 (30%), Gaps = 39/219 (17%) Query: 11 FLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGIT 70 + D ET G P D A + + EVF P A + G+T Sbjct: 440 YTAFDLETTGLDPEQDAVVALAGVHVL--GRRVLRQEVFEALVNPGRPISPAATAVHGLT 497 Query: 71 PQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQH 130 + R K EA A F T ++ +N FD R R D Sbjct: 498 AEMLRDKPPLEAVLPA--FRAFVQ-DTVLVAHNGA-FDLAFLR----RAGLDQPPLLDT- 548 Query: 131 DNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVYAT 190 + L +RLE L G+ + H A+ D T Sbjct: 549 --------------------LLLAQLLFPDLKDYRLEALAHRFGVPATGRHTALGDALMT 588 Query: 191 IAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPL 229 + QP LF+ R +L +++ + PL Sbjct: 589 AEV---FVRMQPLLFE-----RGLKRLWDVVEACRRLPL 619 >UniRef50_Q16B76 Exonuclease, putative n=3 Tax=Roseobacter RepID=Q16B76_ROSDO Length = 465 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 40/215 (18%), Positives = 61/215 (28%), Gaps = 29/215 (13%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 TF+ D ET G P D Q A+R + + GE P PG+ + I Sbjct: 272 TFVVFDSETTGLDPHTDEVVQLGAVRVVNGKIIEGEVFDTLVNP--GRTIPPGSTAVHQI 329 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 + + H I+ +N FD R + Sbjct: 330 SDAMVADAPGFD-VACRAFHQF--AEHAVIVAHN-APFDMAFLRRQCR-------DQDYA 378 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANG--IEHSNAHDAMADV 187 DN +LD + + G L+ L I H + D Sbjct: 379 FDNP---ILDTVHLSAVV----------FGGSAEHTLDALCDRLNVHIPDDVRHTGLGDA 425 Query: 188 YATIAMA-KLVKTRQPRLFDYLFTHRNKHKLMALI 221 AT L+ + R F R + + + I Sbjct: 426 LATAKALVALIPVLEARGFTTFEQVRAEIQKHSRI 460 >UniRef50_C7G8J4 Putative DNA polymerase III, alpha chain n=1 Tax=Roseburia intestinalis L1-82 RepID=C7G8J4_9FIRM Length = 235 Score = 115 bits (289), Expect = 3e-24, Method: Composition-based stats. Identities = 35/204 (17%), Positives = 62/204 (30%), Gaps = 28/204 (13%) Query: 9 STFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITG 68 ++ D E G + D + A+R + + C+ + +TG Sbjct: 2 QDYVVIDLEMTGLNAKTDHILEVGAVRVR-NHQAVDKFGAILCQ---NVKIPEKVTELTG 57 Query: 69 ITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSW 128 IT + G + + I+G N + FD + N P S Sbjct: 58 ITEAMVQG-GMEKEEAMRQFFEFIGED--IIVGQNVI-FDYGFLKQWAV-NHNMPLERS- 111 Query: 129 QHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADVY 188 +D ++ P+ LE L G++ NAH A D Y Sbjct: 112 --------AVDTLKLARKFLPKEQKKD----------LESLCAYFGVKRENAHRAFDDAY 153 Query: 189 ATIAMAKLVKTRQPRLFDYLFTHR 212 T + + ++ R F + Sbjct: 154 ETWQIYEALRERYEEESAGDFMPK 177 >UniRef50_Q600A7 DNA polymerase III, alpha chain n=4 Tax=Mycoplasma RepID=Q600A7_MYCH2 Length = 1469 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 43/270 (15%), Positives = 82/270 (30%), Gaps = 34/270 (12%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 F+ D ET G + +F A+ + + E F+ KP P ITGI Sbjct: 410 KFVIFDLETTGLSAFYNEIVEFGAVVLQNGIEI--EKHQFFIKPTGK--IPPAITKITGI 465 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 + + + +I + + ++ +N FD F + Sbjct: 466 SQKMIDETAISWEIALEKITKII--KDSVLVAHNAA-FDFSFLEQFFRQKAKKSLKNP-- 520 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSN--AHDAMADV 187 ++D + L P S L+++ K IE+ AH A D Sbjct: 521 -------IIDTLEVSRFLNPNE----------KSHSLKNVAKRYEIEYDEEIAHRADYDA 563 Query: 188 Y-ATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKP---LVHVSGMFGAWRGNT 243 T + + + + L + + + ++ P + G + Sbjct: 564 KILTTIWKNFLAELKSQNINDLTSLSEIKNSIFELRPEKVFPKQLTIIAKNQIGIKKLYK 623 Query: 244 SWVAPLAWHPENRNAVIMVD-LAGDISPLL 272 + +R +I D L D L+ Sbjct: 624 LVSLANTENLISRP-LIFYDHLQKDPDLLI 652 >UniRef50_D2L4P4 DNA polymerase III, epsilon subunit n=1 Tax=Desulfovibrio sp. FW1012B RepID=D2L4P4_9DELT Length = 249 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 41/196 (20%), Positives = 62/196 (31%), Gaps = 20/196 (10%) Query: 10 TFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGI 69 F+ D E G P A+R + GE +P +P+ A LI + Sbjct: 48 DFVAVDTELTGFDPRRHALVSIGAVRLRGLSILPGEAFYTLVRP-PAAVPR-DATLIHRL 105 Query: 70 TPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWSWQ 129 T A A A A ++G++ V D R+ A Sbjct: 106 TGA-ALADAPPVAEALAAFLDFL--GPAVVVGHH-VDLDMGFLNAAARRHMGGELAAPC- 160 Query: 130 HDNSRWDLLDVMRACYALRPEGINWPENDDG-----LPSFRLEHLTKANGIEHSNAHDAM 184 +D +R AL + + G +RL L + G+ AHDA Sbjct: 161 --------IDTLRLAMALEEKRLAVAGGAGGPDGFERVDYRLPALCRRYGLPGFAAHDAR 212 Query: 185 ADVYATIAMAKLVKTR 200 AD AT + + Sbjct: 213 ADALATAYLFLYLARH 228 >UniRef50_Q0JYK3 Putative exonuclease n=1 Tax=Ralstonia eutropha H16 RepID=Q0JYK3_RALEH Length = 220 Score = 115 bits (288), Expect = 3e-24, Method: Composition-based stats. Identities = 35/181 (19%), Positives = 58/181 (32%), Gaps = 26/181 (14%) Query: 8 QSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLIT 67 F+ D ET G + AIR + N + KP+ +T Sbjct: 49 PERFVVFDIETTGLDSERHEILEIGAIRVNRNSNN-HDTFQVLVKPSRKV--PKKITELT 105 Query: 68 GITPQEARAKGENEAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNIFYRNFYDPYAWS 127 GITP+ A+G + + ++ +N FD ++ S Sbjct: 106 GITPEMIEAEGVSLESAVQDFAKF--AGNLRLVSFN-AEFDMAFISKAAGKS-------S 155 Query: 128 WQHDNSRWDLLDVMRACYALRPEGINWPENDDGLPSFRLEHLTKANGIEHSNAHDAMADV 187 N L + R WP+ S+RL + K ++ S+ H A+ D Sbjct: 156 ITFANPVSCALKMSRRA---------WPD----RKSYRLAEIAKDGNLDTSDMHRALGDC 202 Query: 188 Y 188 Sbjct: 203 Q 203 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.310 0.136 0.370 Lambda K H 0.267 0.0416 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 2,709,401,080 Number of Sequences: 3077464 Number of extensions: 113277141 Number of successful extensions: 304015 Number of sequences better than 1.0e-01: 250 Number of HSP's better than 0.1 without gapping: 749 Number of HSP's successfully gapped in prelim test: 1049 Number of HSP's that attempted gapping in prelim test: 299665 Number of HSP's gapped (non-prelim): 1956 length of query: 467 length of database: 1,040,396,356 effective HSP length: 132 effective length of query: 335 effective length of database: 634,171,108 effective search space: 212447321180 effective search space used: 212447321180 T: 11 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.2 bits) S2: 95 (41.2 bits)