BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= batch____ (120 letters) Database: uniref50.fasta 3,077,464 sequences; 1,040,396,356 total letters Searching..................................................done Results from round 1 Score E Sequences producing significant alignments: (bits) Value UniRef50_P0ADL0 Uncharacterized protein yibL n=137 Tax=Enterobac... 239 2e-62 UniRef50_C9Y4N2 Uncharacterized protein yibL n=14 Tax=Enterobact... 200 1e-50 UniRef50_Q5DYC2 Conserved protein n=7 Tax=Gammaproteobacteria Re... 99 3e-20 UniRef50_B7VTI8 ATPase involved in DNA repair n=22 Tax=Gammaprot... 99 3e-20 UniRef50_A6XR61 ATPase involved in DNA repair n=53 Tax=Gammaprot... 82 4e-15 UniRef50_Q5LBI5 Putative exported protein n=4 Tax=Bacteroides Re... 38 0.090 >UniRef50_P0ADL0 Uncharacterized protein yibL n=137 Tax=Enterobacteriaceae RepID=YIBL_ECO57 Length = 120 Score = 239 bits (611), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 120/120 (100%), Positives = 120/120 (100%) Query: 1 MKEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKL 60 MKEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKL Sbjct: 1 MKEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKL 60 Query: 61 SKEAQKLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTALGREMGLQEMTGFSKTAF 120 SKEAQKLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTALGREMGLQEMTGFSKTAF Sbjct: 61 SKEAQKLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTALGREMGLQEMTGFSKTAF 120 >UniRef50_C9Y4N2 Uncharacterized protein yibL n=14 Tax=Enterobacteriaceae RepID=C9Y4N2_CROTZ Length = 120 Score = 200 bits (508), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 99/120 (82%), Positives = 110/120 (91%) Query: 1 MKEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKL 60 MKE+EK EIKRLSDRLDA+RHQQA +SL EAADKYAELE+E ATLEAEIARL++V + KL Sbjct: 1 MKEIEKAEIKRLSDRLDAVRHQQAAVSLTEAADKYAELEQEIATLEAEIARLKDVRTDKL 60 Query: 61 SKEAQKLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTALGREMGLQEMTGFSKTAF 120 SKEAQKLM MPF+R ITKKEQADMGKLKKSVRGLVVVHPMT LGREMGL+EMTGF+K+ F Sbjct: 61 SKEAQKLMAMPFKRPITKKEQADMGKLKKSVRGLVVVHPMTELGREMGLKEMTGFAKSEF 120 >UniRef50_Q5DYC2 Conserved protein n=7 Tax=Gammaproteobacteria RepID=Q5DYC2_VIBF1 Length = 118 Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 52/115 (45%), Positives = 75/115 (65%) Query: 6 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQ 65 K E++++ +RLD +H+ A + + E TLE ++ +L+ + + Sbjct: 4 KEELQKIHNRLDRCKHRLAAAQKRDDQPVVKQFLHEIQTLEKKLTKLKGKQQFETGNKGT 63 Query: 66 KLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTALGREMGLQEMTGFSKTAF 120 ++ + F RAITK EQADMGKLKKSVRGLVVVHPMTALG+E+GL+EMTG++ AF Sbjct: 64 EVRNLAFNRAITKAEQADMGKLKKSVRGLVVVHPMTALGKELGLKEMTGYAPQAF 118 >UniRef50_B7VTI8 ATPase involved in DNA repair n=22 Tax=Gammaproteobacteria RepID=B7VTI8_VIBSL Length = 118 Score = 99.4 bits (246), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 50/115 (43%), Positives = 77/115 (66%) Query: 6 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQ 65 KNE++++++RLD R++ A + E E L +IA+L+ S +++E + Sbjct: 4 KNELQQINNRLDKCRNKLAAAKTRNDRPVVRQFEDEIKKLTKKIAQLKHKESYDVNQERK 63 Query: 66 KLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTALGREMGLQEMTGFSKTAF 120 L+ MPF+R ITK EQADMGKLKKSV+GLV+VHPMT +G+E+ ++ MTG++ F Sbjct: 64 SLVDMPFKREITKAEQADMGKLKKSVKGLVIVHPMTKIGKELRIEVMTGYAPKKF 118 >UniRef50_A6XR61 ATPase involved in DNA repair n=53 Tax=Gammaproteobacteria RepID=A6XR61_VIBCH Length = 118 Score = 82.4 bits (202), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 49/121 (40%), Positives = 74/121 (61%), Gaps = 12/121 (9%) Query: 6 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELE---KEKATLEAEIARLREVHSQK--- 59 K +I++L++R+D R + ++AA A+ E K LEA RL V ++ Sbjct: 4 KTDIQQLNNRIDTCRRK------LDAAKSRADSEMVSKFTDELEALTKRLNSVKGKQDYD 57 Query: 60 LSKEAQKLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTALGREMGLQEMTGFSKTA 119 L+K + + MPF R +TK EQAD+GKLKKSV+GLV+VHP T +G+ + ++ MTGF+ Sbjct: 58 LNKMRKTIADMPFSRELTKLEQADLGKLKKSVKGLVIVHPTTKIGKALRVEVMTGFAPKP 117 Query: 120 F 120 F Sbjct: 118 F 118 >UniRef50_Q5LBI5 Putative exported protein n=4 Tax=Bacteroides RepID=Q5LBI5_BACFN Length = 533 Score = 38.1 bits (87), Expect = 0.090, Method: Composition-based stats. Identities = 29/115 (25%), Positives = 58/115 (50%), Gaps = 7/115 (6%) Query: 2 KEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEK-EKATLEAEIARLREVHSQKL 60 KE + I+R+S +++ I +QQ D+S + A+ +K + +AE+AR R + +Q Sbjct: 50 KEKKSVLIQRVSQQMEEIAYQQKDISEKRRQEAVAQTQKANRMQQQAELARERALAAQLE 109 Query: 61 SKEAQKLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTALGREMGLQEMTGF 115 +++A ++ A+ ++ QA+ K + ALGR +G +T + Sbjct: 110 AEKAYRMADEQKNLAMERQLQAEQSKRVADTLAFL------ALGRSLGTLSVTQY 158 Searching..................................................done Results from round 2 Score E Sequences producing significant alignments: (bits) Value Sequences used in model and found again: UniRef50_Q5DYC2 Conserved protein n=7 Tax=Gammaproteobacteria Re... 139 3e-32 UniRef50_B7VTI8 ATPase involved in DNA repair n=22 Tax=Gammaprot... 136 3e-31 UniRef50_C9Y4N2 Uncharacterized protein yibL n=14 Tax=Enterobact... 135 4e-31 UniRef50_P0ADL0 Uncharacterized protein yibL n=137 Tax=Enterobac... 133 1e-30 UniRef50_A6XR61 ATPase involved in DNA repair n=53 Tax=Gammaprot... 128 7e-29 Sequences not found previously or not previously below threshold: CONVERGED! >UniRef50_Q5DYC2 Conserved protein n=7 Tax=Gammaproteobacteria RepID=Q5DYC2_VIBF1 Length = 118 Score = 139 bits (349), Expect = 3e-32, Method: Composition-based stats. Identities = 52/115 (45%), Positives = 75/115 (65%) Query: 6 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQ 65 K E++++ +RLD +H+ A + + E TLE ++ +L+ + + Sbjct: 4 KEELQKIHNRLDRCKHRLAAAQKRDDQPVVKQFLHEIQTLEKKLTKLKGKQQFETGNKGT 63 Query: 66 KLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTALGREMGLQEMTGFSKTAF 120 ++ + F RAITK EQADMGKLKKSVRGLVVVHPMTALG+E+GL+EMTG++ AF Sbjct: 64 EVRNLAFNRAITKAEQADMGKLKKSVRGLVVVHPMTALGKELGLKEMTGYAPQAF 118 >UniRef50_B7VTI8 ATPase involved in DNA repair n=22 Tax=Gammaproteobacteria RepID=B7VTI8_VIBSL Length = 118 Score = 136 bits (341), Expect = 3e-31, Method: Composition-based stats. Identities = 50/115 (43%), Positives = 77/115 (66%) Query: 6 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQ 65 KNE++++++RLD R++ A + E E L +IA+L+ S +++E + Sbjct: 4 KNELQQINNRLDKCRNKLAAAKTRNDRPVVRQFEDEIKKLTKKIAQLKHKESYDVNQERK 63 Query: 66 KLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTALGREMGLQEMTGFSKTAF 120 L+ MPF+R ITK EQADMGKLKKSV+GLV+VHPMT +G+E+ ++ MTG++ F Sbjct: 64 SLVDMPFKREITKAEQADMGKLKKSVKGLVIVHPMTKIGKELRIEVMTGYAPKKF 118 >UniRef50_C9Y4N2 Uncharacterized protein yibL n=14 Tax=Enterobacteriaceae RepID=C9Y4N2_CROTZ Length = 120 Score = 135 bits (340), Expect = 4e-31, Method: Composition-based stats. Identities = 99/120 (82%), Positives = 110/120 (91%) Query: 1 MKEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKL 60 MKE+EK EIKRLSDRLDA+RHQQA +SL EAADKYAELE+E ATLEAEIARL++V + KL Sbjct: 1 MKEIEKAEIKRLSDRLDAVRHQQAAVSLTEAADKYAELEQEIATLEAEIARLKDVRTDKL 60 Query: 61 SKEAQKLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTALGREMGLQEMTGFSKTAF 120 SKEAQKLM MPF+R ITKKEQADMGKLKKSVRGLVVVHPMT LGREMGL+EMTGF+K+ F Sbjct: 61 SKEAQKLMAMPFKRPITKKEQADMGKLKKSVRGLVVVHPMTELGREMGLKEMTGFAKSEF 120 >UniRef50_P0ADL0 Uncharacterized protein yibL n=137 Tax=Enterobacteriaceae RepID=YIBL_ECO57 Length = 120 Score = 133 bits (335), Expect = 1e-30, Method: Composition-based stats. Identities = 120/120 (100%), Positives = 120/120 (100%) Query: 1 MKEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKL 60 MKEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKL Sbjct: 1 MKEVEKNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKL 60 Query: 61 SKEAQKLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTALGREMGLQEMTGFSKTAF 120 SKEAQKLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTALGREMGLQEMTGFSKTAF Sbjct: 61 SKEAQKLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTALGREMGLQEMTGFSKTAF 120 >UniRef50_A6XR61 ATPase involved in DNA repair n=53 Tax=Gammaproteobacteria RepID=A6XR61_VIBCH Length = 118 Score = 128 bits (321), Expect = 7e-29, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 67/115 (58%) Query: 6 KNEIKRLSDRLDAIRHQQADLSLVEAADKYAELEKEKATLEAEIARLREVHSQKLSKEAQ 65 K +I++L++R+D R + ++ ++ E L + ++ L+K + Sbjct: 4 KTDIQQLNNRIDTCRRKLDAAKSRADSEMVSKFTDELEALTKRLNSVKGKQDYDLNKMRK 63 Query: 66 KLMKMPFQRAITKKEQADMGKLKKSVRGLVVVHPMTALGREMGLQEMTGFSKTAF 120 + MPF R +TK EQAD+GKLKKSV+GLV+VHP T +G+ + ++ MTGF+ F Sbjct: 64 TIADMPFSRELTKLEQADLGKLKKSVKGLVIVHPTTKIGKALRVEVMTGFAPKPF 118 Database: uniref50.fasta Posted date: Mar 8, 2010 10:38 AM Number of letters in database: 1,040,396,356 Number of sequences in database: 3,077,464 Lambda K H 0.309 0.129 0.319 Lambda K H 0.267 0.0384 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 320,004,462 Number of Sequences: 3077464 Number of extensions: 9030266 Number of successful extensions: 58815 Number of sequences better than 1.0e-01: 9 Number of HSP's better than 0.1 without gapping: 11 Number of HSP's successfully gapped in prelim test: 21 Number of HSP's that attempted gapping in prelim test: 58771 Number of HSP's gapped (non-prelim): 61 length of query: 120 length of database: 1,040,396,356 effective HSP length: 87 effective length of query: 33 effective length of database: 772,656,988 effective search space: 25497680604 effective search space used: 25497680604 T: 11 A: 40 X1: 16 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.7 bits) S2: 87 (38.2 bits)