218 d2hoxa1 Probab=99.80   E-value=2.8e-16  Score=116.68  Aligned_columns=296  Identities=11%

Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHCCCC--CCCEEEEECCHHHHHHHHHHHHHHCCCC-----CEEEEEECCCCCCHHHH
Q ss_conf             0855467768989999999999976988--7878999789799999999999946899-----73999817655534888
Q batch____        73 LSHTCFQVLAYEPYLELCEIMNQKVPGD--FAKKTLLVTTGSEAVENAVKIARAATKR-----SGTIAFSGAYHGRTHYT  145 (426)
Q Consensus        73 ~~~~~~~~~~~~~~~~~ae~l~~~~~~~--~~~~v~~~~sGseA~~~Ai~~a~~~~~r-----~~ii~~~~~~hg~~~~~  145 (426)
                      +.+...+...++...+.-.++.+..+..  ....++|+++.+++...++.........     ...+++...++......
T Consensus        92 y~~~~~~~~~~~~L~~~i~~l~~~~g~~~~~~~~iv~t~G~~~~l~~a~~aL~~pGd~v~~~~p~~v~~~~p~y~~~~~~  171 (425)
T d2hoxa1          92 YFFNPVSNFISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPESKVVAHAPFYPVFREQ  171 (425)
T ss_dssp             SSCSSCCTTCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCCEEEEECSSCCHHHHHH
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHH
T ss_conf             54566434452899999999988508867887769994688999999999864888612356774357300237789999


Q ss_pred             HHHCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCEECCHHHHHHH
Q ss_conf             76438845333566665787412003367567787236999999997516878779999816543589650898999999
Q batch____       146 LALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRL  225 (426)
Q Consensus       146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~iive~~~~~~G~~~~~~~~l~~l  225 (426)
                      +...+........                        |.+.++....     +++.++++...+|.+|.+.+        
T Consensus       172 ~~~~~~~~~~~~~------------------------d~~~~~~~~~-----~~~~~~~i~~P~NPtG~v~~--------  214 (425)
T d2hoxa1         172 TKYFDKKGYVWAG------------------------NAANYVNVSN-----PEQYIEMVTSPNNPEGLLRH--------  214 (425)
T ss_dssp             HHHSCCTTEEEEE------------------------EGGGGTTCSC-----GGGEEEEEESSCTTTCCCCC--------
T ss_pred             HHHCCCCCCCCCC------------------------CHHHHHHHCC-----CCCEEEEECCCCCCCCEEEE--------
T ss_conf             9855997444247------------------------9889997248-----88579998178888560654--------


Q ss_pred             HHHHHHCCCEEEEECCCCCCCCCCCCCHHHHCCCCCCEEEECCCCC-CCCEEEE-EEECHHHHHHHHHHCCCCCCCCCHH
Q ss_conf             9999880988999877223443588723776489863786246454-7540699-9846999965321002332258878
Q batch____       226 RALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIA-GGFPLAG-VTGRAEVMDAVAPGGLGGTYAGNPI  303 (426)
Q Consensus       226 ~~l~~~~g~~li~DEv~~g~~~~g~~~~~~~~g~~~di~t~~K~~~-~~~~~g~-~~~~~~~~~~~~~~~~~~t~~~~~~  303 (426)
                         |.+||+++|.||+|..+...+..   ...+.+..+.++||.++ .|.++|+ ++.++++.+.+.......++..+..
T Consensus       215 ---a~~~~~~~i~De~y~~~~~~~~~---~~~~~~i~~~S~SK~~g~~GlRiG~~i~~~~~i~~~l~~~~~~~~~~~s~~  288 (425)
T d2hoxa1         215 ---AVIKGCKSIYDMVYYWPHYTPIK---YKADEDILLFTMSKFTGHSGSRFGWALIKDESVYNNLLNYMTKNTEGTPRE  288 (425)
T ss_dssp             ---CSSTTCEEEEECTTCSTTTSCCC---SCBCCSEEEEEHHHHTSCGGGCCEEEEECCHHHHHHHHHHHHHHTSSCCHH
T ss_pred             ---EEECCCEEEEECCCCCCCCCCCC---CCCCCEEEEEECCCCCCCCCCCEEEEEECCHHHHHHHHHHHHCCCCCCCHH
T ss_conf             ---23239689971432343323333---456854999815510123323101899689899999998641057773689


Q ss_pred             HHHHHHHHHHHH---------CCHHHHHHHHHHHHHHHHHHHHHHHHCC---------------CCEECCCCCEEEEEEE
Q ss_conf             899999999862---------6866899876799999999999998579---------------9500234430789994
Q batch____       304 ACVAALEVLKVF---------EQENLLQKANDLGQKLKDGLLAIAEKHP---------------EIGDVRGLGAMIAIEL  359 (426)
Q Consensus       304 ~~a~~~a~~~~~---------~~~~~~~~~~~~~~~~~~~~~~l~~~~~---------------~~~~vrg~G~~~~~~~  359 (426)
                      .+.++...+...         ....+.+..+...+..++.+...+.+.+               ........+.+.|+++
T Consensus       289 ~Q~aA~~~L~~~~~~~~~~~~~~~~~~~~~r~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~~~~~~~~~~~~f~w~~~  368 (425)
T d2hoxa1         289 TQLRSLKVLKEVVAMVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKC  368 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEE
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC
T ss_conf             99999999602013456555548999999999999999999999863576300345655432210013778761699867


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHCCEEEEEE---CCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             1665323788899999999999789499851---68887799940888899999999999999999
Q batch____       360 FEDGDHNKPDAKLTAEIVARARDKGLILLSC---GPYYNVLRILVPLTIEDAQIRQGLEIISQCFD  422 (426)
Q Consensus       360 ~~~~~~~~~~~~~~~~l~~~l~~~Gi~v~~~---~~~~~~iR~~~~~~~t~e~id~~~~~l~~~l~  422 (426)
                      .......         +...|.++||++.|+   +...+.+|++  +..++|++|+++++|++.++
T Consensus       369 ~~~~~~~---------~~~lL~e~GI~v~pGs~FG~~~~~vRiS--l~~~~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         369 EWEEDKD---------CYQTFQNGRINTQNGVGFEASSRYVRLS--LIKTQDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             CSGGGCS---------HHHHHHHTTEECEEGGGGTSCTTEEEEE--CSSCHHHHHHHHHHHHHHHT
T ss_pred             CCCCHHH---------HHHHHHHCCEEEECCCCCCCCCCEEEEE--ECCCHHHHHHHHHHHHHHHH
T ss_conf             8980899---------9999996694997170238988659999--13998999999999999872